Citrus Sinensis ID: 008063
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 579 | 2.2.26 [Sep-21-2011] | |||||||
| O34355 | 529 | Putative amidohydrolase Y | yes | no | 0.872 | 0.954 | 0.310 | 9e-60 | |
| Q68AP4 | 542 | N-substituted formamide d | N/A | no | 0.882 | 0.942 | 0.272 | 4e-36 | |
| Q06555 | 465 | Exoenzymes regulatory pro | N/A | no | 0.604 | 0.752 | 0.25 | 7e-21 | |
| A0AJJ5 | 579 | Adenine deaminase OS=List | no | no | 0.100 | 0.100 | 0.394 | 8e-06 | |
| P39761 | 577 | Adenine deaminase OS=Baci | no | no | 0.105 | 0.105 | 0.362 | 3e-05 | |
| Q1MCV9 | 570 | Urease subunit alpha OS=R | no | no | 0.113 | 0.115 | 0.364 | 3e-05 | |
| B5ZMP0 | 570 | Urease subunit alpha OS=R | no | no | 0.113 | 0.115 | 0.364 | 5e-05 | |
| B3PXB3 | 570 | Urease subunit alpha OS=R | no | no | 0.113 | 0.115 | 0.364 | 5e-05 | |
| Q2K517 | 570 | Urease subunit alpha OS=R | yes | no | 0.113 | 0.115 | 0.364 | 5e-05 | |
| B2V525 | 581 | Adenine deaminase OS=Clos | no | no | 0.101 | 0.101 | 0.410 | 6e-05 |
| >sp|O34355|YTCJ_BACSU Putative amidohydrolase YtcJ OS=Bacillus subtilis (strain 168) GN=ytcJ PE=4 SV=1 | Back alignment and function desciption |
|---|
Score = 231 bits (590), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 168/541 (31%), Positives = 268/541 (49%), Gaps = 36/541 (6%)
Query: 52 GVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQ-LAADGTNVLNLQGKVVVPGFIDSHV 110
G I+T + +++ +++G I G+Y +++ + T ++L G V+ PGF+DSH+
Sbjct: 8 GFIYTMLEEGDRTEAVYVEDGVIKGTGSYERLKEKYGSPETEEISLNGAVMFPGFVDSHL 67
Query: 111 HFIPGGLQMARVKLRGVSHKDEFVRRVKEAVKNSKKGSWILGGGWN-NDLWGGDLPMASW 169
H I G + ++ L ++ KD ++ KE + K W++G GWN N D
Sbjct: 68 HLIGHGEKQLQLDLSALTSKDSILQAAKERERQLPKNDWLIGEGWNENQFETPDYLTKHD 127
Query: 170 IDDITPHNPVWLSRMDGHMGLANSVALQLVGITNLSEDPNGGTIMKTSSGEPTGLLIDAA 229
+D + P PV L R+ H NS ALQ GI+ + DP+GG I+K ++GEPTGLL D A
Sbjct: 128 LDRLFPDRPVLLKRICRHAIAVNSAALQAAGISRNTPDPDGGVIVKDANGEPTGLLFDKA 187
Query: 230 MKLILPWIPEVSVDERREALLRASNLALSRGVTTVVDFGRYYPGESVQLSWEDFADV--- 286
LIL +P VS EAL A ++G+T G S LS+ + DV
Sbjct: 188 QDLILKAVPPVSQHYVDEALTAAIKDCWTKGLTG---------GHSEDLSY--YGDVSVP 236
Query: 287 ---YQWASYSEKMKIRVCLFFPLET---WSSLADLINKTGHVLSDWVYLGGVKAFADGSL 340
Y+ A+ K R L E W L L +V G +K FADG+L
Sbjct: 237 MKAYEKAAAGGKYPFRCHLLVHHEAVDRWEQLEKLSGP-------YVEFGAMKIFADGAL 289
Query: 341 GSNSALFHEPYADEPHNYGLQVMELESLLSMTMASDKSGLQVAIHAIGDRANDLVLDMYK 400
G +AL EPY D+P G+QV + E+L + + + G++VA+HAIGD A + VL+ +
Sbjct: 290 GGRTALLKEPYQDDPSTNGVQVHDDETLGRLIRKAREKGMEVAVHAIGDLAFEKVLNAIE 349
Query: 401 SVVVTTGKRDQRFRIEHAQHLASGTAARFGDQGIVASMQPQHLLDDADSARKKLGVDRAE 460
G+ D R+ HAQ L + R I +QP + D +LG DR
Sbjct: 350 KHPPKNGRHD---RLIHAQVLDNELIERAARMPIALDLQPHFVASDFPWVIDRLGKDRM- 405
Query: 461 RESYLFQSLLANNALLALGSDWPVADINPLCAIRTAMKRIPPGWDN--AWIPSERISLTD 518
+ ++ +++L++ L A GSD P+ ++PL I++A+ R N ++ SE + + +
Sbjct: 406 KTAFAWKTLISKGILCAGGSDAPIEPVDPLLGIQSAVLRKSSHEQNGPSYNESECLPVYE 465
Query: 519 ALIAHTLSAARACFLENDVGSLSPGKIADFVILSTSSWEDFAAEVS-ASIEATYVSGVQA 577
A+ +T +A + E G ++ G ADF +LS + A++ I+ T ++G
Sbjct: 466 AIKLYTEGSAGIIYKEKSRGKIAEGYDADFTVLSGDPFAIDPAQLHLLEIKKTVINGQIV 525
Query: 578 Y 578
Y
Sbjct: 526 Y 526
|
Bacillus subtilis (strain 168) (taxid: 224308) EC: 3EC: .EC: 5EC: .EC: -EC: .EC: - |
| >sp|Q68AP4|NFDA_ARTPS N-substituted formamide deformylase OS=Arthrobacter pascens GN=nfdA PE=1 SV=1 | Back alignment and function description |
|---|
Score = 153 bits (386), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 151/554 (27%), Positives = 245/554 (44%), Gaps = 43/554 (7%)
Query: 46 DLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGF 105
DL++ N + T D A ++ + GRI VG + V+ AA VL++ GK VVPGF
Sbjct: 6 DLMIINANVRTVDARNSCAQAVLVSGGRIAIVGTETEVRGAAAPDAEVLDVSGKTVVPGF 65
Query: 106 IDSHVH-----FIPGGLQMARVKLRGVSHKDEFVRRVKEAVKNSKKGSWILGGGWN-NDL 159
ID+H H F P + + L + DE + ++ +N G W+ G ++ + +
Sbjct: 66 IDAHNHLSVAAFAPDSVDCSTPPLATL---DEVLEVIERHCRNIPPGQWVRGINFHASHI 122
Query: 160 WGGDLPMASWIDDITPHNPVWLSRMDGHMGLANSVALQLVGITNLSEDPNGGTIMKTSSG 219
P +D++ P+NP +L H G ANS AL LVGI + +P GG I + SG
Sbjct: 123 REQRNPTRYELDEVAPNNPFFLIDASCHAGFANSAALDLVGIGAHTPEPWGGEIERDLSG 182
Query: 220 EPTGLLIDAAMKLI--LPW--IPEVSVDERREALLRASNLALSRGVTTVVDFGRYYPGES 275
+PTG L++AA L+ W E D E L N L+ G+T V D
Sbjct: 183 KPTGTLLEAAANLLHSASWNDYAERDWDRAVELLHSKMNDYLAVGLTGVGD--------- 233
Query: 276 VQLSWEDFADVYQWASYSEKMKIRVCLFFPLETWSSLADL--INKTGHVLSDWVYL---G 330
+ A++Y+ A + KM + + + S+ DL + ++ YL G
Sbjct: 234 -AMVTAKSAELYRRADAAGKMPFTLQQLHGGDHFFSMQDLGRSDTVDRIMEPESYLLRGG 292
Query: 331 GVKAFADGSLGSNSALFHEPYADEPHN-----YGLQVMELESLLSMTMASDKSGLQVAIH 385
+K F D + S P D+ H+ G + + + + K G+ +AIH
Sbjct: 293 AMKIFVDRAYPS-------PAIDQIHDGCKTHVGANFYSKSEVHDLAVRASKLGINLAIH 345
Query: 386 AIGDRANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLASGTAARFGDQGIVASMQPQHLLD 445
+G+ A D+VLD Y++V + D R+EHA +G R D GI P
Sbjct: 346 GMGNCAIDIVLDAYEAVRRQSNA-DTVLRLEHAFIAETGQGQRMADLGIDLVANPGLAFG 404
Query: 446 DADSARKKLGVDRAERESYLFQSLLANNALLALGSDWPVADINPLCAIRTAMKRIPPGWD 505
+ G ++ + + +S+L ++L SD P +P + TA+ R
Sbjct: 405 WGEVFNMWRGENQEHLKLFPVRSMLDAGVRVSLASDHPCGTYSPAEIMWTAVARETMA-G 463
Query: 506 NAWIPSERISLTDALIAHTLSAARACFLENDVGSLSPGKIADFVILSTSSWEDFAAEVSA 565
P E ++ +AL +T++ A A ++ GS+ GK A+ ++L + E+
Sbjct: 464 APLEPDEAVTADEALRMYTINPAHASGRGSEEGSIEAGKRANLLVLDRDPVDCATGELRE 523
Query: 566 -SIEATYVSGVQAY 578
+ TYV GV Y
Sbjct: 524 LQVLRTYVDGVLRY 537
|
Hydrolyzes N-substituted formamides, but not amides. N-benzylformamide is the preferred substrate, while N-butylformamide is hydrolyzed at a much lower rate. Has very low activity towards allylformamide, N-(2-cyclohex-1-enylethyl)formamide and N-(alpha-methylbenzyl)formamide. Arthrobacter pascens (taxid: 1677) EC: 3 EC: . EC: 5 EC: . EC: 1 EC: . EC: 9 EC: 1 |
| >sp|Q06555|AEPA_PECCC Exoenzymes regulatory protein AepA OS=Pectobacterium carotovorum subsp. carotovorum GN=aepA PE=4 SV=1 | Back alignment and function description |
|---|
Score = 102 bits (255), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 98/392 (25%), Positives = 173/392 (44%), Gaps = 42/392 (10%)
Query: 29 LKLTPATTTTTTTNLEADLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAA 88
+K+ T T++ A V N I+T +D A + + G+IV VG + A
Sbjct: 5 VKMLSVTLGLFTSHAFAHTVYENARIYTVNDRQPTASVLVVDQGKIVYVGGNDGAKPFKA 64
Query: 89 DGTNVLNLQGKVVVPGFIDSHVHFIPGGLQMAR----VKLRGVSHKDEFVRRVKEAVKNS 144
T +++L+GK V+PGFI+SH H P + + V + G + + ++K +
Sbjct: 65 TATELVDLEGKTVLPGFIESHAH--PATVAVMEAGDFVYVDGARTLSQILSQLKAYLVAH 122
Query: 145 KKGSWILGGGWNNDLWG---GDLPMASWIDDITPHNPVWLSRMDGHMGLANSVALQLVGI 201
K +++L G+N G G LP A+ +D ++ P+ + H G ANS AL + +
Sbjct: 123 PKANYLLAQGFNVASLGLPQGALPTAADLDTVSESVPIVVYDSGMHAGWANSAALNVAHV 182
Query: 202 TNLSEDPNGGT--IMKTSSGEPTGLLIDAAMKLILPWIPEVSVDERREALLRASNLALSR 259
+ DP G + + G PTG + ++AM ++ +V+ E L S
Sbjct: 183 DANTPDPIPGKHYFERDNKGNPTGFMHESAMHNVVDAQQFNAVENVAEKLQPILKTYHSL 242
Query: 260 GVTTVVDFGRYYPGESVQLSWEDFADVYQWASYSEKMKIRVCL---FFPLETWSSLADLI 316
G T + D G + V A +E+ K++V +F S+ ++
Sbjct: 243 GFTAITDVGDTFS-----------TTVAAIARLNEQGKLKVYYQRGYFYDAAKSTEQNIA 291
Query: 317 NKTGHVLSDWVYLGGV-----KAFADGSLGSNSALFHEPYAD----EPHNYGLQVMELES 367
+ G L + + G + K F DG++ +S ++PY + EP + +
Sbjct: 292 SLKG--LREKYHQGNLSINLYKLFMDGTIEMDSGAMYQPYPNGNVVEP------FLSQKQ 343
Query: 368 LLSMTMASDKSGLQVAIHAIGDRANDLVLDMY 399
+ A+ K+G V +HAIGD+A +LD +
Sbjct: 344 INDNVAAALKAGFSVHVHAIGDKAQQSILDAF 375
|
Involved in the control of extracellular enzymes production. Stimulates PEL, PEH, CEL, and PRT production. Pectobacterium carotovorum subsp. carotovorum (taxid: 555) |
| >sp|A0AJJ5|ADEC_LISW6 Adenine deaminase OS=Listeria welshimeri serovar 6b (strain ATCC 35897 / DSM 20650 / SLCC5334) GN=ade PE=3 SV=1 | Back alignment and function description |
|---|
Score = 52.8 bits (125), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 44/71 (61%), Gaps = 13/71 (18%)
Query: 44 EADLVVTNGVI---FTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKV 100
+ADLV+ NG I F+G+ + +AIKNG I +G++S +Q +++ G+
Sbjct: 19 KADLVIKNGRIVNVFSGE---IMEGDIAIKNGYIAGIGDFSEAEQ-------IMDAAGEF 68
Query: 101 VVPGFIDSHVH 111
+VPGFID+HVH
Sbjct: 69 IVPGFIDAHVH 79
|
Listeria welshimeri serovar 6b (strain ATCC 35897 / DSM 20650 / SLCC5334) (taxid: 386043) EC: 3 EC: . EC: 5 EC: . EC: 4 EC: . EC: 2 |
| >sp|P39761|ADEC_BACSU Adenine deaminase OS=Bacillus subtilis (strain 168) GN=adeC PE=1 SV=2 | Back alignment and function description |
|---|
Score = 50.8 bits (120), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 41/69 (59%), Gaps = 8/69 (11%)
Query: 44 EADLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVP 103
+AD+V+ NG I + + +AI +G IV +G Y +G N+++ +G+++VP
Sbjct: 18 KADIVIKNGKIMDVYNQEWIYEDIAITDGVIVGLGEY--------EGENIIDAEGQMIVP 69
Query: 104 GFIDSHVHF 112
GFID HVH
Sbjct: 70 GFIDGHVHI 78
|
Bacillus subtilis (strain 168) (taxid: 224308) EC: 3 EC: . EC: 5 EC: . EC: 4 EC: . EC: 2 |
| >sp|Q1MCV9|URE1_RHIL3 Urease subunit alpha OS=Rhizobium leguminosarum bv. viciae (strain 3841) GN=ureC PE=3 SV=1 | Back alignment and function description |
|---|
Score = 50.4 bits (119), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 41/74 (55%), Gaps = 8/74 (10%)
Query: 46 DLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGN------YSAVQQLAADGTNVLNLQGK 99
D V+TN VI D S ++ + +K+GRIV++G V + GT + +GK
Sbjct: 69 DTVITNAVIV--DHSGIYKADIGLKDGRIVAIGKAGNPDMQPGVNIIVGPGTEAIAAEGK 126
Query: 100 VVVPGFIDSHVHFI 113
+V G +DSH+HFI
Sbjct: 127 IVTAGGMDSHIHFI 140
|
Rhizobium leguminosarum bv. viciae (strain 3841) (taxid: 216596) EC: 3 EC: . EC: 5 EC: . EC: 1 EC: . EC: 5 |
| >sp|B5ZMP0|URE1_RHILW Urease subunit alpha OS=Rhizobium leguminosarum bv. trifolii (strain WSM2304) GN=ureC PE=3 SV=1 | Back alignment and function description |
|---|
Score = 50.1 bits (118), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 41/74 (55%), Gaps = 8/74 (10%)
Query: 46 DLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGN------YSAVQQLAADGTNVLNLQGK 99
D V+TN VI D S ++ + +K+GRIV++G V + GT + +GK
Sbjct: 69 DTVITNAVIV--DHSGVYKADIGLKDGRIVAIGKAGNPDMQPGVNIIVGPGTEAIAAEGK 126
Query: 100 VVVPGFIDSHVHFI 113
+V G +DSH+HFI
Sbjct: 127 IVTAGGMDSHIHFI 140
|
Rhizobium leguminosarum bv. trifolii (strain WSM2304) (taxid: 395492) EC: 3 EC: . EC: 5 EC: . EC: 1 EC: . EC: 5 |
| >sp|B3PXB3|URE1_RHIE6 Urease subunit alpha OS=Rhizobium etli (strain CIAT 652) GN=ureC PE=3 SV=1 | Back alignment and function description |
|---|
Score = 50.1 bits (118), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 40/74 (54%), Gaps = 8/74 (10%)
Query: 46 DLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGN------YSAVQQLAADGTNVLNLQGK 99
D V+TN VI D S ++ + +KNGRI ++G V + GT + +GK
Sbjct: 69 DTVITNAVIV--DHSGIYKADIGLKNGRIAAIGKAGNPDMQPGVNIIVGPGTEAIAGEGK 126
Query: 100 VVVPGFIDSHVHFI 113
+V G +DSH+HFI
Sbjct: 127 IVTAGGMDSHIHFI 140
|
Rhizobium etli (strain CIAT 652) (taxid: 491916) EC: 3 EC: . EC: 5 EC: . EC: 1 EC: . EC: 5 |
| >sp|Q2K517|URE1_RHIEC Urease subunit alpha OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=ureC PE=3 SV=1 | Back alignment and function description |
|---|
Score = 50.1 bits (118), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 40/74 (54%), Gaps = 8/74 (10%)
Query: 46 DLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGN------YSAVQQLAADGTNVLNLQGK 99
D V+TN VI D S ++ + +KNGRI ++G V + GT + +GK
Sbjct: 69 DTVITNAVIV--DHSGIYKADIGLKNGRIAAIGKAGNPDMQPGVNIIVGPGTEAIAGEGK 126
Query: 100 VVVPGFIDSHVHFI 113
+V G +DSH+HFI
Sbjct: 127 IVTAGGMDSHIHFI 140
|
Rhizobium etli (strain CFN 42 / ATCC 51251) (taxid: 347834) EC: 3 EC: . EC: 5 EC: . EC: 1 EC: . EC: 5 |
| >sp|B2V525|ADEC_CLOBA Adenine deaminase OS=Clostridium botulinum (strain Alaska E43 / Type E3) GN=ade PE=3 SV=1 | Back alignment and function description |
|---|
Score = 49.7 bits (117), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 41/73 (56%), Gaps = 14/73 (19%)
Query: 43 LEADLVVTNGVI---FTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGK 99
++AD VV NG I FTGD + +AI +G I +G Y DG +++ Q K
Sbjct: 19 VKADTVVKNGKILNVFTGD---ITRGDIAIVDGFIAGIGKY--------DGEQIIDAQDK 67
Query: 100 VVVPGFIDSHVHF 112
V+VPGFID H+H
Sbjct: 68 VIVPGFIDGHMHI 80
|
Clostridium botulinum (strain Alaska E43 / Type E3) (taxid: 508767) EC: 3 EC: . EC: 5 EC: . EC: 4 EC: . EC: 2 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 579 | ||||||
| 255543987 | 574 | Exoenzymes regulatory protein aepA precu | 0.984 | 0.993 | 0.737 | 0.0 | |
| 359495042 | 578 | PREDICTED: putative amidohydrolase ytcJ- | 0.924 | 0.925 | 0.766 | 0.0 | |
| 356546356 | 578 | PREDICTED: putative amidohydrolase ytcJ- | 0.987 | 0.989 | 0.682 | 0.0 | |
| 224075862 | 517 | predicted protein [Populus trichocarpa] | 0.892 | 1.0 | 0.732 | 0.0 | |
| 186511115 | 576 | amidohydrolase family protein [Arabidops | 0.994 | 1.0 | 0.675 | 0.0 | |
| 31616517 | 576 | LAF3 isoform 2 [Arabidopsis thaliana] | 0.994 | 1.0 | 0.675 | 0.0 | |
| 297820330 | 576 | LAF3/LAF3 ISF1/LAF3 ISF2 [Arabidopsis ly | 0.994 | 1.0 | 0.670 | 0.0 | |
| 31616515 | 583 | LAF3 isoform 1 [Arabidopsis thaliana] | 0.984 | 0.977 | 0.677 | 0.0 | |
| 186511117 | 583 | amidohydrolase family protein [Arabidops | 0.984 | 0.977 | 0.677 | 0.0 | |
| 449449292 | 545 | PREDICTED: putative amidohydrolase YtcJ- | 0.924 | 0.981 | 0.702 | 0.0 |
| >gi|255543987|ref|XP_002513056.1| Exoenzymes regulatory protein aepA precursor, putative [Ricinus communis] gi|223548067|gb|EEF49559.1| Exoenzymes regulatory protein aepA precursor, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 890 bits (2301), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 430/583 (73%), Positives = 500/583 (85%), Gaps = 13/583 (2%)
Query: 1 MNIYVAISATIALALSIFSFPLLNNFYLLKLTPATTTTTT----TNLEADLVVTNGVIFT 56
MN ISAT+ LALSIF LL+ + TTT+ L ADL+V NGVIFT
Sbjct: 1 MNFSTIISATVVLALSIF---------LLQWSKFGITTTSFSSSRELTADLIVKNGVIFT 51
Query: 57 GDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHFIPGG 116
DDSL FADS A++NGRI+ VGNYS++Q LA +GT V+NL+GK+VVPGFIDSHVH I GG
Sbjct: 52 SDDSLPFADSFAVQNGRILRVGNYSSLQDLAGNGTKVVNLEGKLVVPGFIDSHVHLIFGG 111
Query: 117 LQMARVKLRGVSHKDEFVRRVKEAVKNSKKGSWILGGGWNNDLWGGDLPMASWIDDITPH 176
LQM RV+LRGV+ KDEFVRRV++AV+N K+GSW+LGGGWNNDLWGG+LP ASWIDDI P
Sbjct: 112 LQMIRVELRGVNQKDEFVRRVRDAVRNLKEGSWVLGGGWNNDLWGGELPAASWIDDIAPK 171
Query: 177 NPVWLSRMDGHMGLANSVALQLVGITNLSEDPNGGTIMKTSSGEPTGLLIDAAMKLILPW 236
NPVWL+RMDGHMGLANSVAL+L GI NL EDPNGGTIM++++GEPTGL+IDAAMKLIL +
Sbjct: 172 NPVWLTRMDGHMGLANSVALKLAGINNLLEDPNGGTIMRSANGEPTGLIIDAAMKLILSY 231
Query: 237 IPEVSVDERREALLRASNLALSRGVTTVVDFGRYYPGESVQLSWEDFADVYQWASYSEKM 296
IPEVSVDE+REALL A NLAL RGVTTVVDFGRY+PG SV+ SWED +DVYQWA KM
Sbjct: 232 IPEVSVDEKREALLIAGNLALMRGVTTVVDFGRYFPGASVEHSWEDLSDVYQWADSLGKM 291
Query: 297 KIRVCLFFPLETWSSLADLINKTGHVLSDWVYLGGVKAFADGSLGSNSALFHEPYADEPH 356
+IRVCLFFP+ETWS L+DLI K G LSDW+YLGGVKAFADGSLGSNSALF+EPY EPH
Sbjct: 292 RIRVCLFFPMETWSRLSDLITKVGRALSDWIYLGGVKAFADGSLGSNSALFYEPYIGEPH 351
Query: 357 NYGLQVMELESLLSMTMASDKSGLQVAIHAIGDRANDLVLDMYKSVVVTTGKRDQRFRIE 416
NYGLQV ++E+L +MT+ASDK GLQVAIHAIGDRAND+VLDMY+SVV T GKRD+RFRIE
Sbjct: 352 NYGLQVTDVENLFNMTVASDKVGLQVAIHAIGDRANDMVLDMYESVVSTNGKRDRRFRIE 411
Query: 417 HAQHLASGTAARFGDQGIVASMQPQHLLDDADSARKKLGVDRAERESYLFQSLLANNALL 476
HAQHLASGTAARFG+QGI+AS+QP HLLDDADSA KKLG+DRA+ SY F+SLL++NA L
Sbjct: 412 HAQHLASGTAARFGEQGIIASVQPDHLLDDADSAIKKLGMDRAQNGSYQFRSLLSSNAQL 471
Query: 477 ALGSDWPVADINPLCAIRTAMKRIPPGWDNAWIPSERISLTDALIAHTLSAARACFLEND 536
ALGSDWPVA+INPL I+TA+KRIPPGW+NAWIPSE +SL DA+IAHT+SAARACFL+ D
Sbjct: 472 ALGSDWPVANINPLGGIKTAVKRIPPGWENAWIPSECLSLKDAIIAHTISAARACFLDCD 531
Query: 537 VGSLSPGKIADFVILSTSSWEDFAAEVSASIEATYVSGVQAYP 579
+GSLSPGK+ADFVILST+SW+DF E SA++EATYV+G QAYP
Sbjct: 532 LGSLSPGKLADFVILSTNSWDDFETEASAAVEATYVAGAQAYP 574
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359495042|ref|XP_002265500.2| PREDICTED: putative amidohydrolase ytcJ-like [Vitis vinifera] gi|296090331|emb|CBI40150.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 859 bits (2220), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 411/536 (76%), Positives = 475/536 (88%), Gaps = 1/536 (0%)
Query: 45 ADLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAV-QQLAADGTNVLNLQGKVVVP 103
ADLVV N +I+T D SL FADSMA+ NGRI+ VGNYS+V Q L GT LNL+GK+VVP
Sbjct: 43 ADLVVRNALIYTSDASLPFADSMAVSNGRILRVGNYSSVVQDLPGYGTKELNLEGKIVVP 102
Query: 104 GFIDSHVHFIPGGLQMARVKLRGVSHKDEFVRRVKEAVKNSKKGSWILGGGWNNDLWGGD 163
GFIDSHVHFI GGLQMA+V+LRG++++DEFVRRV+EAVKN K+GSW+LGGGWNNDLWGG+
Sbjct: 103 GFIDSHVHFINGGLQMAQVELRGINNRDEFVRRVQEAVKNKKQGSWVLGGGWNNDLWGGE 162
Query: 164 LPMASWIDDITPHNPVWLSRMDGHMGLANSVALQLVGITNLSEDPNGGTIMKTSSGEPTG 223
LP+ASWIDDITP+NPVWLSR DGHMGLANS+AL+L GIT +EDP GGTIMKT+SGEP G
Sbjct: 163 LPVASWIDDITPYNPVWLSRTDGHMGLANSMALKLAGITKYTEDPIGGTIMKTTSGEPNG 222
Query: 224 LLIDAAMKLILPWIPEVSVDERREALLRASNLALSRGVTTVVDFGRYYPGESVQLSWEDF 283
LLID+AMKL+LPWIPEVSVDERREAL+RASNLAL RGVTTVVDFGRY PG SVQLSW+DF
Sbjct: 223 LLIDSAMKLLLPWIPEVSVDERREALVRASNLALMRGVTTVVDFGRYVPGTSVQLSWDDF 282
Query: 284 ADVYQWASYSEKMKIRVCLFFPLETWSSLADLINKTGHVLSDWVYLGGVKAFADGSLGSN 343
+DVY W S KM IRVCLFFP+ETWS L DLI+KTG V+S W+YLGGVK FADGSLGSN
Sbjct: 283 SDVYHWTDTSGKMMIRVCLFFPMETWSHLLDLISKTGRVVSQWIYLGGVKGFADGSLGSN 342
Query: 344 SALFHEPYADEPHNYGLQVMELESLLSMTMASDKSGLQVAIHAIGDRANDLVLDMYKSVV 403
SALF+EPY D+PHNYGL V ELESL +MTMASDKSGLQVAIHAIGD+ANDL+LD+Y+SV
Sbjct: 343 SALFYEPYVDDPHNYGLLVTELESLFNMTMASDKSGLQVAIHAIGDKANDLILDVYESVG 402
Query: 404 VTTGKRDQRFRIEHAQHLASGTAARFGDQGIVASMQPQHLLDDADSARKKLGVDRAERES 463
T G RD+RFRIEHAQHL G+ ARFG+QGIVAS+QP HLLDDADSA KKLGV+RA++ES
Sbjct: 403 STNGMRDRRFRIEHAQHLVPGSTARFGEQGIVASVQPDHLLDDADSAIKKLGVERAQKES 462
Query: 464 YLFQSLLANNALLALGSDWPVADINPLCAIRTAMKRIPPGWDNAWIPSERISLTDALIAH 523
YLF+SLLA+NA LA GSDWPVADINPL +I+ AMKRIPPGW++AWI SE ++L DAL A+
Sbjct: 463 YLFRSLLASNAQLAFGSDWPVADINPLGSIKAAMKRIPPGWESAWISSECLTLHDALNAY 522
Query: 524 TLSAARACFLENDVGSLSPGKIADFVILSTSSWEDFAAEVSASIEATYVSGVQAYP 579
T+SAARA FL+ND+GSLSPGK+ADFV+LST SW+DFAAE SAS+EAT+V G+QAYP
Sbjct: 523 TISAARASFLDNDLGSLSPGKMADFVVLSTDSWDDFAAEGSASVEATFVGGLQAYP 578
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356546356|ref|XP_003541592.1| PREDICTED: putative amidohydrolase ytcJ-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 821 bits (2121), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 394/577 (68%), Positives = 470/577 (81%), Gaps = 5/577 (0%)
Query: 3 IYVAISATIALALSIFSFPLLNNFYLLKLTPATTTTTTTNLEADLVVTNGVIFTGDDSLL 62
+++ + A I ++ S PL + Y L + ADLV+ NGVI+T DDSL
Sbjct: 7 LHIFVFAPILFCITFLSLPLPSPTYFLAWKSQLSQPV-----ADLVLRNGVIYTSDDSLP 61
Query: 63 FADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHFIPGGLQMARV 122
FADSMA+ NGR++ VGN S VQ+ GT VL+L GKVVVPGFIDSHVHFI GGLQM +V
Sbjct: 62 FADSMAVANGRVLCVGNRSFVQEFEGYGTQVLDLGGKVVVPGFIDSHVHFIDGGLQMMQV 121
Query: 123 KLRGVSHKDEFVRRVKEAVKNSKKGSWILGGGWNNDLWGGDLPMASWIDDITPHNPVWLS 182
KLRGV+ K+EF+RR+K+A +++K+GSWILGGGWNNDLWGGDLP ASWI+D+TP+NPVWLS
Sbjct: 122 KLRGVNKKEEFIRRIKDAAQSTKQGSWILGGGWNNDLWGGDLPAASWINDVTPNNPVWLS 181
Query: 183 RMDGHMGLANSVALQLVGITNLSEDPNGGTIMKTSSGEPTGLLIDAAMKLILPWIPEVSV 242
R+DGHMGLANSVAL L GITNL++DP GGTI++T++GEPTG+LID+A L+ IPE SV
Sbjct: 182 RVDGHMGLANSVALTLAGITNLTDDPRGGTILRTANGEPTGVLIDSARTLVTSQIPEDSV 241
Query: 243 DERREALLRASNLALSRGVTTVVDFGRYYPGESVQLSWEDFADVYQWASYSEKMKIRVCL 302
D+RREAL RASNLAL+RGVTTVVD GRYYPG S +LSW+DF+DVYQWA+ KMKIRVCL
Sbjct: 242 DDRREALHRASNLALTRGVTTVVDMGRYYPGFSTELSWDDFSDVYQWANSMSKMKIRVCL 301
Query: 303 FFPLETWSSLADLINKTGHVLSDWVYLGGVKAFADGSLGSNSALFHEPYADEPHNYGLQV 362
FF +ETWS L +IN+ GH LS+W+Y+GGVKAFADGSLGSNSAL +EPY D+P NYGLQV
Sbjct: 302 FFSMETWSRLVGVINRVGHALSEWIYIGGVKAFADGSLGSNSALLYEPYVDDPDNYGLQV 361
Query: 363 MELESLLSMTMASDKSGLQVAIHAIGDRANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLA 422
ELE+LL+MT SD +GLQVAIHAIGD+ANDL+LDMY V T G RD+RFRIEHAQ LA
Sbjct: 362 TELEALLNMTTESDLNGLQVAIHAIGDKANDLILDMYGLVASTNGMRDRRFRIEHAQQLA 421
Query: 423 SGTAARFGDQGIVASMQPQHLLDDADSARKKLGVDRAERESYLFQSLLANNALLALGSDW 482
+GT RFG Q +VASMQP LLDDADS KKLG DRAE+ESYLF+SLL NNAL+A GSDW
Sbjct: 422 AGTPGRFGKQRVVASMQPDQLLDDADSTSKKLGKDRAEKESYLFRSLLNNNALVAFGSDW 481
Query: 483 PVADINPLCAIRTAMKRIPPGWDNAWIPSERISLTDALIAHTLSAARACFLENDVGSLSP 542
PV DINPL I+TAMKR PP W +AWIPSE ISL DA+ A+T+SAARA FL+ D+GSLSP
Sbjct: 482 PVVDINPLSGIKTAMKRRPPNWQSAWIPSECISLDDAIKAYTISAARASFLDKDLGSLSP 541
Query: 543 GKIADFVILSTSSWEDFAAEVSASIEATYVSGVQAYP 579
GK+ADFVILST SW+DFA + SA++E TYVSGV+AYP
Sbjct: 542 GKLADFVILSTDSWKDFAEDASANVEETYVSGVRAYP 578
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224075862|ref|XP_002304801.1| predicted protein [Populus trichocarpa] gi|222842233|gb|EEE79780.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 806 bits (2081), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 392/535 (73%), Positives = 452/535 (84%), Gaps = 18/535 (3%)
Query: 45 ADLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPG 104
ADL+V N VIFT D SL ADSMAI+NGRI+ LN++GKV+VPG
Sbjct: 1 ADLIVKNAVIFTSDASLPVADSMAIQNGRILR-----------------LNVEGKVLVPG 43
Query: 105 FIDSHVHFIPGGLQMARVKLRGVSHKDEFVRRVKEAVKNSKKGSWILGGGWNNDLWGGDL 164
FIDSHVH IPGGLQM RV+LRGV+ K+EFVRRVKEA N K+GSW+LGGGWNNDLWGG+L
Sbjct: 44 FIDSHVHLIPGGLQMGRVELRGVNQKEEFVRRVKEAAGNVKQGSWVLGGGWNNDLWGGEL 103
Query: 165 PMASWIDDITPHNPVWLSRMDGHMGLANSVALQLVGITNLSEDPNGGTIMKTSSGEPTGL 224
PMASW+DD T NPVWL+RMDGHMGLANS+AL+L GI N S DP+GGTI K++ GEPTGL
Sbjct: 104 PMASWLDDFTADNPVWLTRMDGHMGLANSLALKLAGINNSSIDPSGGTIAKSTHGEPTGL 163
Query: 225 LIDAAMKLILPWIPEVSVDERREALLRASNLALSRGVTTVVDFGRYYPGESVQLSWEDFA 284
LIDAAMKL+LP IPEVSVDERREA LRASNLAL+RGVTTVVDFGRY+PG SV+ SWED +
Sbjct: 164 LIDAAMKLVLPSIPEVSVDERREAFLRASNLALTRGVTTVVDFGRYFPGASVEHSWEDLS 223
Query: 285 DVYQWASYSEKMKIRVCLFFPLETWSSLADLINKTGHVLSDWVYLGGVKAFADGSLGSNS 344
DVYQWA S KM IRVCLFFP+ETWS L +LI KTG LSDW+YLGGVKAFADGSLGSNS
Sbjct: 224 DVYQWADSSGKMIIRVCLFFPMETWSRLLELIKKTGRALSDWIYLGGVKAFADGSLGSNS 283
Query: 345 ALFHEPYADEPHNYGLQVMELESLLSMTMASDKSGLQVAIHAIGDRANDLVLDMYKSVVV 404
A F EPYADEPHNYGLQV + ESL +MT ASDK GLQVAIHAIGDRAN++VL+MY+SV +
Sbjct: 284 AFFFEPYADEPHNYGLQVTDPESLFNMTAASDKLGLQVAIHAIGDRANEMVLEMYRSVAL 343
Query: 405 TTGKRDQRFRIEHAQHLASGTAARFGDQGIVASMQPQHLLDDADSARKKLGVDRAERESY 464
T G RD+RFRIEHAQHLA G AARFG+QG+VAS+QP HL DDADSA KKLGVDRA++ SY
Sbjct: 344 TNGMRDRRFRIEHAQHLAPGMAARFGEQGVVASVQPDHLHDDADSAAKKLGVDRAQQGSY 403
Query: 465 LFQSLLANNALLALGSDWPVADINPLCAIRTAMKRIPPGWDNAWIPSERISLTDALIAHT 524
LF SLLA+NA LALGSDWPVA+INP+ +I+TA++RIP GW NAW+ SE +SL DALIAHT
Sbjct: 404 LFHSLLASNARLALGSDWPVANINPVGSIKTAIQRIPHGWKNAWMSSECLSLNDALIAHT 463
Query: 525 LSAARACFLENDVGSLSPGKIADFVILSTSSWEDFAAEVSASIEATYVSGVQAYP 579
+SAA ACFL++++GSLSPGK+ADFVILSTS+ +D AE S ++EATYV+GVQAYP
Sbjct: 464 ISAAYACFLDSELGSLSPGKLADFVILSTSTLDDL-AEGSVTVEATYVAGVQAYP 517
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|186511115|ref|NP_567027.2| amidohydrolase family protein [Arabidopsis thaliana] gi|332645927|gb|AEE79448.1| amidohydrolase family protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 796 bits (2055), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 391/579 (67%), Positives = 472/579 (81%), Gaps = 3/579 (0%)
Query: 1 MNIYVAISATIALALSIFSFPLLNNFYLLKLTPATTTTTTTNLEADLVVTNGVIFTGDDS 60
MN++V +SA + L +S+ PLLN+ Y L + T + ADL+VTNG IFT D S
Sbjct: 1 MNLFVIVSAAVFLLISVAYLPLLNDLYWSTLK---SLTPPAGIVADLLVTNGTIFTSDSS 57
Query: 61 LLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHFIPGGLQMA 120
L FADSMAI+NGRI+ VG+++ ++ DGT +NL+GK+VVPG IDSHVH I GGLQMA
Sbjct: 58 LPFADSMAIRNGRILKVGSFATLKGFIGDGTMEVNLEGKIVVPGLIDSHVHLISGGLQMA 117
Query: 121 RVKLRGVSHKDEFVRRVKEAVKNSKKGSWILGGGWNNDLWGGDLPMASWIDDITPHNPVW 180
+V LRGVS KDEF + VK+AV+N+K+GSWILGGGWNND WGG+LP ASWID+I+P NPVW
Sbjct: 118 QVGLRGVSQKDEFCKMVKDAVQNAKEGSWILGGGWNNDFWGGELPSASWIDEISPRNPVW 177
Query: 181 LSRMDGHMGLANSVALQLVGITNLSEDPNGGTIMKTSSGEPTGLLIDAAMKLILPWIPEV 240
L RMDGHM LANS+AL++ G+ +L+EDP GGTIM+ SGEPTGLLIDAAM+L+ PW+ E+
Sbjct: 178 LIRMDGHMALANSLALKIAGVISLTEDPVGGTIMRMPSGEPTGLLIDAAMELVTPWVKEI 237
Query: 241 SVDERREALLRASNLALSRGVTTVVDFGRYYPGESVQLSWEDFADVYQWASYSEKMKIRV 300
SVDERREAL RAS AL+RGVTTV+D GRY+PG + +LSW+DF DVY +A S+KM IR
Sbjct: 238 SVDERREALFRASKYALTRGVTTVIDLGRYFPGTTDELSWKDFQDVYLYADSSKKMMIRT 297
Query: 301 CLFFPLETWSSLADLINKTGHVLSDWVYLGGVKAFADGSLGSNSALFHEPYADEPHNYGL 360
CLFFP+ TWS L DL + G VLS+W+YLGGVKAF DGSLGSNSALF+E Y D P+NYGL
Sbjct: 298 CLFFPITTWSRLLDLKLQKGSVLSEWLYLGGVKAFIDGSLGSNSALFYEEYIDTPNNYGL 357
Query: 361 QVMELESLLSMTMASDKSGLQVAIHAIGDRANDLVLDMYKSVVVTTGKRDQRFRIEHAQH 420
+VM+ E L + TMA+DKSGLQVAIHAIGD+AND++LDMY+SV G RD+RFRIEHAQH
Sbjct: 358 EVMDPEKLSNFTMAADKSGLQVAIHAIGDKANDMILDMYESVAAANGDRDRRFRIEHAQH 417
Query: 421 LASGTAARFGDQGIVASMQPQHLLDDADSARKKLGVDRAERESYLFQSLLANNALLALGS 480
LA G+A RFG IVAS+QP HLLDDADS KKLG +RA +ESYLFQSLL NALLALGS
Sbjct: 418 LAPGSANRFGQLHIVASVQPDHLLDDADSVAKKLGSERAVKESYLFQSLLNGNALLALGS 477
Query: 481 DWPVADINPLCAIRTAMKRIPPGWDNAWIPSERISLTDALIAHTLSAARACFLENDVGSL 540
DWPVADINPL +IRTA+KRIPP WD+AWIPSERIS TDALIA T+SAARA FL++ +GSL
Sbjct: 478 DWPVADINPLHSIRTAVKRIPPKWDHAWIPSERISFTDALIAQTISAARAAFLDHHLGSL 537
Query: 541 SPGKIADFVILSTSSWEDFAAEVSASIEATYVSGVQAYP 579
SPGK+ADFVILST+SW++F+ +VSAS+ ATYV G Q YP
Sbjct: 538 SPGKLADFVILSTNSWDEFSKDVSASVLATYVGGKQLYP 576
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|31616517|gb|AAP55750.1| LAF3 isoform 2 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 795 bits (2053), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 391/579 (67%), Positives = 472/579 (81%), Gaps = 3/579 (0%)
Query: 1 MNIYVAISATIALALSIFSFPLLNNFYLLKLTPATTTTTTTNLEADLVVTNGVIFTGDDS 60
MN++V +SA + L +S+ PLLN+ Y L + T + ADL+VTNG IFT D S
Sbjct: 1 MNLFVIVSAAVFLLISVAYLPLLNDLYWSTLK---SPTPPAGIVADLLVTNGTIFTSDSS 57
Query: 61 LLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHFIPGGLQMA 120
L FADSMAI+NGRI+ VG+++ ++ DGT +NL+GK+VVPG IDSHVH I GGLQMA
Sbjct: 58 LPFADSMAIRNGRILKVGSFATLKGFIGDGTMEVNLEGKIVVPGLIDSHVHLISGGLQMA 117
Query: 121 RVKLRGVSHKDEFVRRVKEAVKNSKKGSWILGGGWNNDLWGGDLPMASWIDDITPHNPVW 180
+V LRGVS KDEF + VK+AV+N+K+GSWILGGGWNND WGG+LP ASWID+I+P NPVW
Sbjct: 118 QVGLRGVSQKDEFCKMVKDAVQNAKEGSWILGGGWNNDFWGGELPSASWIDEISPRNPVW 177
Query: 181 LSRMDGHMGLANSVALQLVGITNLSEDPNGGTIMKTSSGEPTGLLIDAAMKLILPWIPEV 240
L RMDGHM LANS+AL++ G+ +L+EDP GGTIM+ SGEPTGLLIDAAM+L+ PW+ E+
Sbjct: 178 LIRMDGHMALANSLALKIAGVISLTEDPVGGTIMRMPSGEPTGLLIDAAMELVTPWVKEI 237
Query: 241 SVDERREALLRASNLALSRGVTTVVDFGRYYPGESVQLSWEDFADVYQWASYSEKMKIRV 300
SVDERREAL RAS AL+RGVTTV+D GRY+PG + +LSW+DF DVY +A S+KM IR
Sbjct: 238 SVDERREALFRASKYALTRGVTTVIDLGRYFPGTTDELSWKDFQDVYLYADSSKKMMIRT 297
Query: 301 CLFFPLETWSSLADLINKTGHVLSDWVYLGGVKAFADGSLGSNSALFHEPYADEPHNYGL 360
CLFFP+ TWS L DL + G VLS+W+YLGGVKAF DGSLGSNSALF+E Y D P+NYGL
Sbjct: 298 CLFFPITTWSRLLDLKLQKGSVLSEWLYLGGVKAFIDGSLGSNSALFYEEYIDTPNNYGL 357
Query: 361 QVMELESLLSMTMASDKSGLQVAIHAIGDRANDLVLDMYKSVVVTTGKRDQRFRIEHAQH 420
+VM+ E L + TMA+DKSGLQVAIHAIGD+AND++LDMY+SV G RD+RFRIEHAQH
Sbjct: 358 EVMDPEKLSNFTMAADKSGLQVAIHAIGDKANDMILDMYESVAAANGDRDRRFRIEHAQH 417
Query: 421 LASGTAARFGDQGIVASMQPQHLLDDADSARKKLGVDRAERESYLFQSLLANNALLALGS 480
LA G+A RFG IVAS+QP HLLDDADS KKLG +RA +ESYLFQSLL NALLALGS
Sbjct: 418 LAPGSANRFGQLHIVASVQPDHLLDDADSVAKKLGSERAVKESYLFQSLLNGNALLALGS 477
Query: 481 DWPVADINPLCAIRTAMKRIPPGWDNAWIPSERISLTDALIAHTLSAARACFLENDVGSL 540
DWPVADINPL +IRTA+KRIPP WD+AWIPSERIS TDALIA T+SAARA FL++ +GSL
Sbjct: 478 DWPVADINPLHSIRTAVKRIPPKWDHAWIPSERISFTDALIAQTISAARAAFLDHHLGSL 537
Query: 541 SPGKIADFVILSTSSWEDFAAEVSASIEATYVSGVQAYP 579
SPGK+ADFVILST+SW++F+ +VSAS+ ATYV G Q YP
Sbjct: 538 SPGKLADFVILSTNSWDEFSKDVSASVLATYVGGKQLYP 576
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297820330|ref|XP_002878048.1| LAF3/LAF3 ISF1/LAF3 ISF2 [Arabidopsis lyrata subsp. lyrata] gi|297323886|gb|EFH54307.1| LAF3/LAF3 ISF1/LAF3 ISF2 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 795 bits (2053), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 388/579 (67%), Positives = 474/579 (81%), Gaps = 3/579 (0%)
Query: 1 MNIYVAISATIALALSIFSFPLLNNFYLLKLTPATTTTTTTNLEADLVVTNGVIFTGDDS 60
MN+++ +SA + L +S+ PLLN+ Y L + T + ADL+V NG IFT D S
Sbjct: 1 MNLFIVVSAAVFLLISVAYLPLLNDLYWSTLK---SLTPPVGIVADLLVRNGTIFTSDSS 57
Query: 61 LLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHFIPGGLQMA 120
L FADSMAI+NGRI+ VG+++ ++ DGT +NL+GK+VVPG IDSHVH I GGLQMA
Sbjct: 58 LPFADSMAIRNGRILKVGSFATLKGFIGDGTMEVNLEGKIVVPGLIDSHVHLISGGLQMA 117
Query: 121 RVKLRGVSHKDEFVRRVKEAVKNSKKGSWILGGGWNNDLWGGDLPMASWIDDITPHNPVW 180
+V LRGVS KDEF + VK+AV+ +K+GSWILGGGWNND WGG+LP ASWID+I+PHNPVW
Sbjct: 118 QVGLRGVSQKDEFCKMVKDAVQIAKEGSWILGGGWNNDFWGGELPSASWIDEISPHNPVW 177
Query: 181 LSRMDGHMGLANSVALQLVGITNLSEDPNGGTIMKTSSGEPTGLLIDAAMKLILPWIPEV 240
L RMDGHM LANS+AL++ G+T+L+EDP GGTIM+ SGEPTGLLIDAAM+L+ PW+ E+
Sbjct: 178 LIRMDGHMALANSLALRIAGVTSLTEDPVGGTIMRMPSGEPTGLLIDAAMELVTPWVKEI 237
Query: 241 SVDERREALLRASNLALSRGVTTVVDFGRYYPGESVQLSWEDFADVYQWASYSEKMKIRV 300
SVDERREAL RAS AL+RGVTTV+D GRY+PG + +LSW+DF DVY +A S+KM IR
Sbjct: 238 SVDERREALFRASKYALTRGVTTVIDLGRYFPGTTDELSWKDFQDVYLYADSSKKMMIRT 297
Query: 301 CLFFPLETWSSLADLINKTGHVLSDWVYLGGVKAFADGSLGSNSALFHEPYADEPHNYGL 360
CLFFP+ TWS L+DL + G VLS+W+YLGGVKAF DGSLGS+SALF+E Y D P+NYGL
Sbjct: 298 CLFFPITTWSRLSDLKLQKGSVLSEWLYLGGVKAFIDGSLGSSSALFYEEYIDTPNNYGL 357
Query: 361 QVMELESLLSMTMASDKSGLQVAIHAIGDRANDLVLDMYKSVVVTTGKRDQRFRIEHAQH 420
+VM+ E L + TMA+DKSGLQVAIHAIGD+AND++LDMY+SV V G RD+RFRIEHAQH
Sbjct: 358 EVMDPEKLSNFTMAADKSGLQVAIHAIGDKANDIILDMYESVAVANGYRDRRFRIEHAQH 417
Query: 421 LASGTAARFGDQGIVASMQPQHLLDDADSARKKLGVDRAERESYLFQSLLANNALLALGS 480
LA G+A RFG IVAS+QP HLLDDADS +K+G +RAE+ESYLFQSLL NALLALGS
Sbjct: 418 LAPGSANRFGQLHIVASVQPDHLLDDADSVARKIGSERAEKESYLFQSLLNGNALLALGS 477
Query: 481 DWPVADINPLCAIRTAMKRIPPGWDNAWIPSERISLTDALIAHTLSAARACFLENDVGSL 540
DWPVADINPL +IRTA+KRIPP WD+AWIPSERIS TDALIA T+SAAR FL++ +GSL
Sbjct: 478 DWPVADINPLHSIRTAVKRIPPKWDHAWIPSERISFTDALIAQTISAARGAFLDHHLGSL 537
Query: 541 SPGKIADFVILSTSSWEDFAAEVSASIEATYVSGVQAYP 579
SPGK+ADFVILST+SW++F+ +VSAS+ ATYV G Q YP
Sbjct: 538 SPGKLADFVILSTNSWDEFSKDVSASVLATYVGGKQLYP 576
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|31616515|gb|AAP55749.1| LAF3 isoform 1 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 788 bits (2034), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 388/573 (67%), Positives = 467/573 (81%), Gaps = 3/573 (0%)
Query: 7 ISATIALALSIFSFPLLNNFYLLKLTPATTTTTTTNLEADLVVTNGVIFTGDDSLLFADS 66
+SA + L +S+ PLLN+ Y L + T + ADL+VTNG IFT D SL FADS
Sbjct: 14 VSAAVFLLISVAYLPLLNDLYWSTLK---SPTPPAGIVADLLVTNGTIFTSDSSLPFADS 70
Query: 67 MAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHFIPGGLQMARVKLRG 126
MAI+NGRI+ VG+++ ++ DGT +NL+GK+VVPG IDSHVH I GGLQMA+V LRG
Sbjct: 71 MAIRNGRILKVGSFATLKGFIGDGTMEVNLEGKIVVPGLIDSHVHLISGGLQMAQVGLRG 130
Query: 127 VSHKDEFVRRVKEAVKNSKKGSWILGGGWNNDLWGGDLPMASWIDDITPHNPVWLSRMDG 186
VS KDEF + VK+AV+N+K+GSWILGGGWNND WGG+LP ASWID+I+P NPVWL RMDG
Sbjct: 131 VSQKDEFCKMVKDAVQNAKEGSWILGGGWNNDFWGGELPSASWIDEISPRNPVWLIRMDG 190
Query: 187 HMGLANSVALQLVGITNLSEDPNGGTIMKTSSGEPTGLLIDAAMKLILPWIPEVSVDERR 246
HM LANS+AL++ G+ +L+EDP GGTIM+ SGEPTGLLIDAAM+L+ PW+ E+SVDERR
Sbjct: 191 HMALANSLALKIAGVISLTEDPVGGTIMRMPSGEPTGLLIDAAMELVTPWVKEISVDERR 250
Query: 247 EALLRASNLALSRGVTTVVDFGRYYPGESVQLSWEDFADVYQWASYSEKMKIRVCLFFPL 306
EAL RAS AL+RGVTTV+D GRY+PG + +LSW+DF DVY +A S+KM IR CLFFP+
Sbjct: 251 EALFRASKYALTRGVTTVIDLGRYFPGTTDELSWKDFQDVYLYADSSKKMMIRTCLFFPI 310
Query: 307 ETWSSLADLINKTGHVLSDWVYLGGVKAFADGSLGSNSALFHEPYADEPHNYGLQVMELE 366
TWS L DL + G VLS+W+YLGGVKAF DGSLGSNSALF+E Y D P+NYGL+VM+ E
Sbjct: 311 TTWSRLLDLKLQKGSVLSEWLYLGGVKAFIDGSLGSNSALFYEEYIDTPNNYGLEVMDPE 370
Query: 367 SLLSMTMASDKSGLQVAIHAIGDRANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLASGTA 426
L + TMA+DKSGLQVAIHAIGD+AND++LDMY+SV G RD+RFRIEHAQHLA G+A
Sbjct: 371 KLSNFTMAADKSGLQVAIHAIGDKANDMILDMYESVAAANGDRDRRFRIEHAQHLAPGSA 430
Query: 427 ARFGDQGIVASMQPQHLLDDADSARKKLGVDRAERESYLFQSLLANNALLALGSDWPVAD 486
RFG IVAS+QP HLLDDADS KKLG +RA +ESYLFQSLL NALLALGSDWPVAD
Sbjct: 431 NRFGQLHIVASVQPDHLLDDADSVAKKLGSERAVKESYLFQSLLNGNALLALGSDWPVAD 490
Query: 487 INPLCAIRTAMKRIPPGWDNAWIPSERISLTDALIAHTLSAARACFLENDVGSLSPGKIA 546
INPL +IRTA+KRIPP WD+AWIPSERIS TDALIA T+SAARA FL++ +GSLSPGK+A
Sbjct: 491 INPLHSIRTAVKRIPPKWDHAWIPSERISFTDALIAQTISAARAAFLDHHLGSLSPGKLA 550
Query: 547 DFVILSTSSWEDFAAEVSASIEATYVSGVQAYP 579
DFVILST+SW++F+ +VSAS+ ATYV G Q YP
Sbjct: 551 DFVILSTNSWDEFSKDVSASVLATYVGGKQLYP 583
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|186511117|ref|NP_974445.2| amidohydrolase family protein [Arabidopsis thaliana] gi|332645928|gb|AEE79449.1| amidohydrolase family protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 788 bits (2034), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 388/573 (67%), Positives = 467/573 (81%), Gaps = 3/573 (0%)
Query: 7 ISATIALALSIFSFPLLNNFYLLKLTPATTTTTTTNLEADLVVTNGVIFTGDDSLLFADS 66
+SA + L +S+ PLLN+ Y L + T + ADL+VTNG IFT D SL FADS
Sbjct: 14 VSAAVFLLISVAYLPLLNDLYWSTLK---SLTPPAGIVADLLVTNGTIFTSDSSLPFADS 70
Query: 67 MAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHFIPGGLQMARVKLRG 126
MAI+NGRI+ VG+++ ++ DGT +NL+GK+VVPG IDSHVH I GGLQMA+V LRG
Sbjct: 71 MAIRNGRILKVGSFATLKGFIGDGTMEVNLEGKIVVPGLIDSHVHLISGGLQMAQVGLRG 130
Query: 127 VSHKDEFVRRVKEAVKNSKKGSWILGGGWNNDLWGGDLPMASWIDDITPHNPVWLSRMDG 186
VS KDEF + VK+AV+N+K+GSWILGGGWNND WGG+LP ASWID+I+P NPVWL RMDG
Sbjct: 131 VSQKDEFCKMVKDAVQNAKEGSWILGGGWNNDFWGGELPSASWIDEISPRNPVWLIRMDG 190
Query: 187 HMGLANSVALQLVGITNLSEDPNGGTIMKTSSGEPTGLLIDAAMKLILPWIPEVSVDERR 246
HM LANS+AL++ G+ +L+EDP GGTIM+ SGEPTGLLIDAAM+L+ PW+ E+SVDERR
Sbjct: 191 HMALANSLALKIAGVISLTEDPVGGTIMRMPSGEPTGLLIDAAMELVTPWVKEISVDERR 250
Query: 247 EALLRASNLALSRGVTTVVDFGRYYPGESVQLSWEDFADVYQWASYSEKMKIRVCLFFPL 306
EAL RAS AL+RGVTTV+D GRY+PG + +LSW+DF DVY +A S+KM IR CLFFP+
Sbjct: 251 EALFRASKYALTRGVTTVIDLGRYFPGTTDELSWKDFQDVYLYADSSKKMMIRTCLFFPI 310
Query: 307 ETWSSLADLINKTGHVLSDWVYLGGVKAFADGSLGSNSALFHEPYADEPHNYGLQVMELE 366
TWS L DL + G VLS+W+YLGGVKAF DGSLGSNSALF+E Y D P+NYGL+VM+ E
Sbjct: 311 TTWSRLLDLKLQKGSVLSEWLYLGGVKAFIDGSLGSNSALFYEEYIDTPNNYGLEVMDPE 370
Query: 367 SLLSMTMASDKSGLQVAIHAIGDRANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLASGTA 426
L + TMA+DKSGLQVAIHAIGD+AND++LDMY+SV G RD+RFRIEHAQHLA G+A
Sbjct: 371 KLSNFTMAADKSGLQVAIHAIGDKANDMILDMYESVAAANGDRDRRFRIEHAQHLAPGSA 430
Query: 427 ARFGDQGIVASMQPQHLLDDADSARKKLGVDRAERESYLFQSLLANNALLALGSDWPVAD 486
RFG IVAS+QP HLLDDADS KKLG +RA +ESYLFQSLL NALLALGSDWPVAD
Sbjct: 431 NRFGQLHIVASVQPDHLLDDADSVAKKLGSERAVKESYLFQSLLNGNALLALGSDWPVAD 490
Query: 487 INPLCAIRTAMKRIPPGWDNAWIPSERISLTDALIAHTLSAARACFLENDVGSLSPGKIA 546
INPL +IRTA+KRIPP WD+AWIPSERIS TDALIA T+SAARA FL++ +GSLSPGK+A
Sbjct: 491 INPLHSIRTAVKRIPPKWDHAWIPSERISFTDALIAQTISAARAAFLDHHLGSLSPGKLA 550
Query: 547 DFVILSTSSWEDFAAEVSASIEATYVSGVQAYP 579
DFVILST+SW++F+ +VSAS+ ATYV G Q YP
Sbjct: 551 DFVILSTNSWDEFSKDVSASVLATYVGGKQLYP 583
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449449292|ref|XP_004142399.1| PREDICTED: putative amidohydrolase YtcJ-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 773 bits (1997), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 376/535 (70%), Positives = 445/535 (83%)
Query: 45 ADLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPG 104
ADLV+ N +IFT DDSL FADSMAI N RI+ VG YSAVQ L T LNL GKVVVPG
Sbjct: 11 ADLVLKNALIFTCDDSLPFADSMAILNTRILRVGTYSAVQDLVGPRTKELNLGGKVVVPG 70
Query: 105 FIDSHVHFIPGGLQMARVKLRGVSHKDEFVRRVKEAVKNSKKGSWILGGGWNNDLWGGDL 164
FID+H H I GLQM V L GV+HK EFV R+ EA KN+KKG+W+LGGGWNNDLWGG+L
Sbjct: 71 FIDAHGHLIYQGLQMKEVNLHGVNHKHEFVTRIAEAAKNTKKGTWVLGGGWNNDLWGGEL 130
Query: 165 PMASWIDDITPHNPVWLSRMDGHMGLANSVALQLVGITNLSEDPNGGTIMKTSSGEPTGL 224
PMASWIDD+TP NPV LSR+DGHM LAN+V L+L GI+NL+EDP GGTI KT+ G+PTGL
Sbjct: 131 PMASWIDDVTPSNPVLLSRIDGHMSLANNVTLKLAGISNLTEDPEGGTIGKTTGGDPTGL 190
Query: 225 LIDAAMKLILPWIPEVSVDERREALLRASNLALSRGVTTVVDFGRYYPGESVQLSWEDFA 284
LID+A KL+LP+IP+V+V+ERREAL+RAS+LAL+RGVTT+VDFGRYYPGESV+LSWEDF+
Sbjct: 191 LIDSARKLVLPFIPKVAVEERREALVRASSLALARGVTTIVDFGRYYPGESVELSWEDFS 250
Query: 285 DVYQWASYSEKMKIRVCLFFPLETWSSLADLINKTGHVLSDWVYLGGVKAFADGSLGSNS 344
DVYQWA S KM IRVCLFFP+ETWSSL DLI+K G V+S W+YLGGVK FADGSLGS++
Sbjct: 251 DVYQWADSSGKMMIRVCLFFPMETWSSLHDLIHKMGQVVSPWMYLGGVKGFADGSLGSHT 310
Query: 345 ALFHEPYADEPHNYGLQVMELESLLSMTMASDKSGLQVAIHAIGDRANDLVLDMYKSVVV 404
ALFHEPY DEP N G+Q+ E E L ++TM SD S LQVAIHAIGD+AND+VLD+Y+SV+
Sbjct: 311 ALFHEPYVDEPGNCGMQITEREKLFNLTMESDISKLQVAIHAIGDKANDMVLDIYESVIS 370
Query: 405 TTGKRDQRFRIEHAQHLASGTAARFGDQGIVASMQPQHLLDDADSARKKLGVDRAERESY 464
T G RD+RFR+EHAQHLA RFG GI+AS QP+HLLDDA+SA KLG RAE+ES+
Sbjct: 371 TNGPRDRRFRVEHAQHLAPEAPQRFGKLGIIASAQPEHLLDDAESATNKLGAQRAEKESF 430
Query: 465 LFQSLLANNALLALGSDWPVADINPLCAIRTAMKRIPPGWDNAWIPSERISLTDALIAHT 524
LF+SLL A LA GSD PVA+INPL IRTAM+RIPP WD+AW+PSE ++L +A+ A+T
Sbjct: 431 LFRSLLTCKACLAFGSDCPVANINPLGGIRTAMRRIPPSWDHAWMPSECLTLDEAIKAYT 490
Query: 525 LSAARACFLENDVGSLSPGKIADFVILSTSSWEDFAAEVSASIEATYVSGVQAYP 579
+SAA A FL+ D+GSLSPGK+ADFVILST SW++FAAE SASIEATY G+QAYP
Sbjct: 491 ISAAYASFLDKDLGSLSPGKLADFVILSTDSWDEFAAEGSASIEATYTGGIQAYP 545
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 579 | ||||||
| TAIR|locus:2081998 | 583 | LAF3 "LAF3 ISOFORM 2" [Arabido | 0.955 | 0.948 | 0.629 | 3.8e-188 | |
| TIGR_CMR|CPS_2795 | 557 | CPS_2795 "amidohydrolase famil | 0.879 | 0.913 | 0.312 | 4.2e-56 | |
| UNIPROTKB|Q0BWH5 | 551 | HNE_3497 "Putative lipoprotein | 0.412 | 0.433 | 0.353 | 3.8e-48 | |
| UNIPROTKB|Q5LQG1 | 554 | SPO2529 "Uncharacterized prote | 0.404 | 0.422 | 0.366 | 7.9e-45 | |
| TIGR_CMR|SPO_2529 | 554 | SPO_2529 "conserved hypothetic | 0.404 | 0.422 | 0.366 | 7.9e-45 | |
| UNIPROTKB|Q5LKR5 | 551 | Q5LKR5 "Amidohydrolase domain | 0.891 | 0.936 | 0.283 | 8.4e-42 | |
| TIGR_CMR|SPO_A0316 | 551 | SPO_A0316 "amidohydrolase doma | 0.891 | 0.936 | 0.283 | 8.4e-42 | |
| UNIPROTKB|Q81KU4 | 522 | BAS4541 "Uncharacterized prote | 0.430 | 0.477 | 0.291 | 2.8e-39 | |
| TIGR_CMR|BA_4894 | 522 | BA_4894 "conserved hypothetica | 0.430 | 0.477 | 0.291 | 2.8e-39 | |
| ASPGD|ASPL0000004201 | 549 | AN10795 [Emericella nidulans ( | 0.860 | 0.907 | 0.264 | 2.4e-37 |
| TAIR|locus:2081998 LAF3 "LAF3 ISOFORM 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1824 (647.1 bits), Expect = 3.8e-188, P = 3.8e-188
Identities = 354/562 (62%), Positives = 426/562 (75%)
Query: 21 PLLNNFY---LLKLTPAXXXXXXXNLEADLVVTNGVIFTGDDSLLFADSMAIKNGRIVSV 77
PLLN+ Y L LTP + ADL+VTNG IFT D SL FADSMAI+NGRI+ V
Sbjct: 28 PLLNDLYWSTLKSLTPPA------GIVADLLVTNGTIFTSDSSLPFADSMAIRNGRILKV 81
Query: 78 GNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHFIPGGLQMARVKLRGVSHKDEFVRRV 137
G+++ ++ DGT +NL+GK+VVPG IDSHVH I GGLQMA+V LRGVS KDEF + V
Sbjct: 82 GSFATLKGFIGDGTMEVNLEGKIVVPGLIDSHVHLISGGLQMAQVGLRGVSQKDEFCKMV 141
Query: 138 KEAVKNSKKGSWIXXXXXXXXXXXXXXPMASWIDDITPHNPVWLSRMDGHMGLANSVALQ 197
K+AV+N+K+GSWI P ASWID+I+P NPVWL RMDGHM LANS+AL+
Sbjct: 142 KDAVQNAKEGSWILGGGWNNDFWGGELPSASWIDEISPRNPVWLIRMDGHMALANSLALK 201
Query: 198 LVGITNLSEDPNGGTIMKTSSGEPTGLLIDAAMKLILPWIPEVSVDXXXXXXXXXXXXXX 257
+ G+ +L+EDP GGTIM+ SGEPTGLLIDAAM+L+ PW+ E+SVD
Sbjct: 202 IAGVISLTEDPVGGTIMRMPSGEPTGLLIDAAMELVTPWVKEISVDERREALFRASKYAL 261
Query: 258 XXGVTTVVDFGRYYPGESVQLSWEDFADVYQWASYSEKMKIRVCLFFPLETWSSLADLIN 317
GVTTV+D GRY+PG + +LSW+DF DVY +A S+KM IR CLFFP+ TWS L DL
Sbjct: 262 TRGVTTVIDLGRYFPGTTDELSWKDFQDVYLYADSSKKMMIRTCLFFPITTWSRLLDLKL 321
Query: 318 KTGHVLSDWVYLGGVKAFADGSLGSNSALFHEPYADEPHNYGLQVMELESLLSMTMASDK 377
+ G VLS+W+YLGGVKAF DGSLGSNSALF+E Y D P+NYGL+VM+ E L + TMA+DK
Sbjct: 322 QKGSVLSEWLYLGGVKAFIDGSLGSNSALFYEEYIDTPNNYGLEVMDPEKLSNFTMAADK 381
Query: 378 SGLQVAIHAIGDRANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLASGTAARFGDQGIVAS 437
SGLQVAIHAIGD+AND++LDMY+SV G RD+RFRIEHAQHLA G+A RFG IVAS
Sbjct: 382 SGLQVAIHAIGDKANDMILDMYESVAAANGDRDRRFRIEHAQHLAPGSANRFGQLHIVAS 441
Query: 438 MQPQHLLDDADSARKKLGVDRAERESYLFQSXXXXXXXXXXGSDWPVADINPLCAIRTAM 497
+QP HLLDDADS KKLG +RA +ESYLFQS GSDWPVADINPL +IRTA+
Sbjct: 442 VQPDHLLDDADSVAKKLGSERAVKESYLFQSLLNGNALLALGSDWPVADINPLHSIRTAV 501
Query: 498 KRIPPGWDNAWIPSERISLTDALIAHTLSAARACFLENDVGSLSPGKIADFVILSTSSWE 557
KRIPP WD+AWIPSERIS TDALIA T+SAARA FL++ +GSLSPGK+ADFVILST+SW+
Sbjct: 502 KRIPPKWDHAWIPSERISFTDALIAQTISAARAAFLDHHLGSLSPGKLADFVILSTNSWD 561
Query: 558 DFAAEVSASIEATYVSGVQAYP 579
+F+ +VSAS+ ATYV G Q YP
Sbjct: 562 EFSKDVSASVLATYVGGKQLYP 583
|
|
| TIGR_CMR|CPS_2795 CPS_2795 "amidohydrolase family protein" [Colwellia psychrerythraea 34H (taxid:167879)] | Back alignment and assigned GO terms |
|---|
Score = 578 (208.5 bits), Expect = 4.2e-56, P = 4.2e-56
Identities = 168/538 (31%), Positives = 257/538 (47%)
Query: 51 NGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHV 110
NG FT D+SL +++ + I V AV A+ G V++ QG+ ++PG ID+H
Sbjct: 30 NGYTFT-DNSLTQFSAISFTDDIINKVYPIGAVLP-ASKGVIVIDGQGQTMLPGLIDAHG 87
Query: 111 HFIPGGLQMARVKLRGVSHKDEFVRRVKEAVKNSKKGSWIXXXXXXXXX-XXXXXPMASW 169
H I G + RV L + + + V R K++ SWI P A
Sbjct: 88 HVIGYGHSLLRVDLVNATSELDAVNRTISYAKDNPSMSWILGRGWNQVQWSNNSYPNAKS 147
Query: 170 IDDITPHNPVWLSRMDGHMGLANSVALQLVGITNLSEDPNGGTIMKTSSGEPTGLLIDAA 229
+D+ P+ PVWL R+DGH G ANS A+ L GIT+ S+ P GG I+K +G PTG+ ID A
Sbjct: 148 LDEAFPNKPVWLRRVDGHAGWANSKAMALAGITSASKAPVGGDIIKDKNGLPTGIFIDNA 207
Query: 230 MKLILPWIPEVSVDXXXXXXXXXXXXXXXXGVTTVVDFGRYYPGESVQLSWEDFADVYQW 289
M LI I S G+T+V D G + +D A +Y+
Sbjct: 208 MTLITASITPPSPMEDKIALKRAMHSLASLGLTSVHDAG---------IEQKDIA-LYKT 257
Query: 290 ASYSEKMKIRV--CLFFPLETWSSLADLINKTGHVLSDWVY-LGGVKAFADGSLGSNSAL 346
+ M IR+ L+ P W + + + D ++ + VK ADG+LGS A
Sbjct: 258 LASEGNMTIRINGMLYLPSTNWQQQ---LEQGPYRTEDEMFAVNSVKIQADGALGSRGAS 314
Query: 347 FHEPYADEPHNYGLQVMELESLLSMTMASDKSGLQVAIHAIGDRANDLVLDMYKSVVVTT 406
Y+D + GL + + +SL + +G QV HAIGD AN L+LD+Y+ + +
Sbjct: 315 LINDYSDHSGHKGLLLHDKKSLQHYIDFAMNAGFQVNTHAIGDNANKLILDLYQQAIQKS 374
Query: 407 GKRDQRFRIEHAQHLASGTAARFGDQGIVASMQPQHLLDDADSARKKLGVDRAERESYLF 466
+ R RIEHAQ L +RF ++ASMQ H D + A +LG R +Y +
Sbjct: 375 QTKALRHRIEHAQVLRLEDISRFSSLNVIASMQATHATSDKNMAVTRLGGKRI-LGAYAW 433
Query: 467 QSXXXXXXXXXXGSDWPVADINPLCAIRTAMKR-----IPPGWDNAWIPSERISLTDALI 521
+ GSD+PV NP + ++ R +P G W ++++ T+AL
Sbjct: 434 RKLLDSNTIIAAGSDFPVESPNPFFGLHASITRQDHKDLPIG---GWYADQKMTRTEALR 490
Query: 522 AHTLSAARACFLENDVGSLSPGKIADFVILSTSSWEDFAAEV-SASIEATYVSGVQAY 578
+ T+ AA A E +GSL GK ADF++L+ + + + + T+V+G + +
Sbjct: 491 SFTIDAAYAGHQEKLIGSLEAGKKADFILLADDLLTMPESTIWQSQVSQTWVAGKKVF 548
|
|
| UNIPROTKB|Q0BWH5 HNE_3497 "Putative lipoprotein" [Hyphomonas neptunium ATCC 15444 (taxid:228405)] | Back alignment and assigned GO terms |
|---|
Score = 347 (127.2 bits), Expect = 3.8e-48, Sum P(2) = 3.8e-48
Identities = 87/246 (35%), Positives = 126/246 (51%)
Query: 332 VKAFADGSLGSNSALFHEPYADEPHNYGLQVMELESLLSMTMASDKSGLQVAIHAIGDRA 391
VK + DG+LGS AL EPY+D P GL+++++ L + M + ++ +Q++IHAIGD A
Sbjct: 303 VKLYIDGALGSRGALLIEPYSDRPETSGLEILDIYGLHNEMMDAQENDVQLSIHAIGDLA 362
Query: 392 NDLVLDMYKSVVVTTGKRDQRFRIEHAQHLASGTAARFGDQGIVASMQPQHLLDDADSAR 451
N +LD ++ + D R+RIEHAQ L R G++ SMQP H + D A
Sbjct: 363 NRNILDKFEELGYGA---DLRWRIEHAQMLHPDDIDRLATSGLIPSMQPSHAIGDLHFAP 419
Query: 452 KKLGVDRAERESYLFQSXXXXXXXXXXGSDWPVADINPLCAIRTAMKRIP-PGWDN-AWI 509
++G+DR R +Y + S GSD PV +P A+ R G+ W
Sbjct: 420 ARVGIDRL-RGAYAWASLLKAGAVIAGGSDAPVEVGSPTIEFYAAVARKDLKGFSGEGWH 478
Query: 510 PSERISLTDALIAHTLSAARACFLENDVGSLSPGKIADFVILSTSSWEDFAAEV-SASIE 568
P E ++ AL T A A F END+G++ GKIADF + AE+ A
Sbjct: 479 PEEAVTRQQALKLFTTGPAFASFQENDLGTIETGKIADFTVFDRDLMTIPEAEILEAKPV 538
Query: 569 ATYVSG 574
T V+G
Sbjct: 539 MTVVAG 544
|
|
| UNIPROTKB|Q5LQG1 SPO2529 "Uncharacterized protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)] | Back alignment and assigned GO terms |
|---|
Score = 346 (126.9 bits), Expect = 7.9e-45, Sum P(2) = 7.9e-45
Identities = 89/243 (36%), Positives = 128/243 (52%)
Query: 324 SDWVYLGGVKAFADGSLGSNSALFHEPYADEPHNYGLQVMELESLLSMTMASDKSGLQVA 383
SD + G +K F DG + S +A YAD G + E+ + + +D+ GLQ++
Sbjct: 297 SDRLRSGRIKMFMDGVIDSGTAFLVGDYADRTGWCGEALHSAEAFTAAAVEADRRGLQIS 356
Query: 384 IHAIGDRANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLASGTAARFGDQGIVASMQPQH- 442
+HAIGD A VLD Y++ G RD R RIEH + L A R + G+VASMQP H
Sbjct: 357 VHAIGDAAVRRVLDGYEAARRANGARDSRHRIEHIELLHPDDAHRLRELGVVASMQPPHP 416
Query: 443 --LLD-DADSARKKLGVDRAERESYLFQSXXXXXXXXXXGSDWPVADINPLCAIRTAMKR 499
+D + R K G R +++ ++ SDWPV+DINP+ +R AM R
Sbjct: 417 PGAMDFPLEPWRTKAGQGRWP-QAFPVRALLSDGVPLAFSSDWPVSDINPMRGVRAAMTR 475
Query: 500 IPPGWDNAWIPSERISLTDALIAHTLSAARACFLENDVGSLSPGKIADFVILSTSSWEDF 559
P WD+ P R+SLT+AL +T A A F E+ +G ++PG AD V++ E
Sbjct: 476 --PRWDDD-CPDNRLSLTEALHGYTAGGAYAGFDEHRLGRIAPGMQADIVVMDRDL-EAL 531
Query: 560 AAE 562
A+E
Sbjct: 532 ASE 534
|
|
| TIGR_CMR|SPO_2529 SPO_2529 "conserved hypothetical protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)] | Back alignment and assigned GO terms |
|---|
Score = 346 (126.9 bits), Expect = 7.9e-45, Sum P(2) = 7.9e-45
Identities = 89/243 (36%), Positives = 128/243 (52%)
Query: 324 SDWVYLGGVKAFADGSLGSNSALFHEPYADEPHNYGLQVMELESLLSMTMASDKSGLQVA 383
SD + G +K F DG + S +A YAD G + E+ + + +D+ GLQ++
Sbjct: 297 SDRLRSGRIKMFMDGVIDSGTAFLVGDYADRTGWCGEALHSAEAFTAAAVEADRRGLQIS 356
Query: 384 IHAIGDRANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLASGTAARFGDQGIVASMQPQH- 442
+HAIGD A VLD Y++ G RD R RIEH + L A R + G+VASMQP H
Sbjct: 357 VHAIGDAAVRRVLDGYEAARRANGARDSRHRIEHIELLHPDDAHRLRELGVVASMQPPHP 416
Query: 443 --LLD-DADSARKKLGVDRAERESYLFQSXXXXXXXXXXGSDWPVADINPLCAIRTAMKR 499
+D + R K G R +++ ++ SDWPV+DINP+ +R AM R
Sbjct: 417 PGAMDFPLEPWRTKAGQGRWP-QAFPVRALLSDGVPLAFSSDWPVSDINPMRGVRAAMTR 475
Query: 500 IPPGWDNAWIPSERISLTDALIAHTLSAARACFLENDVGSLSPGKIADFVILSTSSWEDF 559
P WD+ P R+SLT+AL +T A A F E+ +G ++PG AD V++ E
Sbjct: 476 --PRWDDD-CPDNRLSLTEALHGYTAGGAYAGFDEHRLGRIAPGMQADIVVMDRDL-EAL 531
Query: 560 AAE 562
A+E
Sbjct: 532 ASE 534
|
|
| UNIPROTKB|Q5LKR5 Q5LKR5 "Amidohydrolase domain protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)] | Back alignment and assigned GO terms |
|---|
Score = 443 (161.0 bits), Expect = 8.4e-42, P = 8.4e-42
Identities = 154/544 (28%), Positives = 245/544 (45%)
Query: 50 TNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSH 109
TN + T D A ++AI+ RI++VG+ + V+ A D V++L+GK V+PGFID+H
Sbjct: 19 TNANVLTVDAEFSTAQAIAIRGNRILAVGSDAEVRAAAGDDATVVDLEGKTVLPGFIDAH 78
Query: 110 VHFIPGGLQMARVKLRGVSH---KDEFVRRVKEAVKNSKKGSWIXXXXXXXXXXXXXXPM 166
H + G + A + G++ DE + + + G W+ +
Sbjct: 79 AHAVSGSVVDAIMDYVGMARFTTVDEVLNHIATRAAKTPAGDWLVFRNFDPAVQEGADAL 138
Query: 167 A-SWIDDITPHNPVWLSRMDGHMGLANSVALQLVGITNLSEDPNGGTIMKTSSGEPTGLL 225
+ +D I+ +P+++ GH+ ANS A ++ G+TN +P GG ++ + G TG +
Sbjct: 139 TFAELDPISTDHPIFILNASGHLAYANSRAFEVSGLTNDVPNPPGGEFVRDADGNLTGTI 198
Query: 226 ID-AAMKLILPWIPEVSVDXXXXXXXXXXXXXXXXGVTTVVDFGRYYPGESVQLSWEDFA 284
+ A I P + G+TTV + G Q S D
Sbjct: 199 KNNVAFLQIAENYPAMKQVNPVEGLLGLLGKWSQQGLTTVSELSL---GALAQ-SPAD-V 253
Query: 285 DVYQWASYSEKM--KIRVCLFFPL--ETWSSLADLINKTGHVLSDWVYLGGVKAFADGSL 340
V A+ S +M ++R F+ L ETW + A + G+ L+ + G K ADGS
Sbjct: 254 QVMAAAAQSGRMTARLRAYPFYTLGTETWDN-AGVKQGDGNALAR---VAGYKLVADGSN 309
Query: 341 GSNSALFHEPYADEPHNYGLQVMELESLLSMTMASDKSGLQVAIHAIGDRANDLVLDMYK 400
+ L EPY + + GL ME + L + + G +AIH GD A D +LD +
Sbjct: 310 QGFTGLQREPYLNR-EDRGLAYMEPDELTTTALERAGKGWHLAIHGNGDAAIDNILDTCQ 368
Query: 401 SVV-VTTGKRDQRFRIEHAQHLASGTAARFGDQGIVASMQPQHLLDDADSARKKL-GVDR 458
++ R RIEH L AR G+ AS H+ + R ++ G+++
Sbjct: 369 ALADAGIDMARVRPRIEHCSILHDEQIARMKALGVSASFLIGHVHYWGVAMRDQVFGLEK 428
Query: 459 AERESYLFQSXXXXXXXXXXGSDWPVADINPLCAIRTAMKRIPPGW---DNAWIPSERIS 515
A+ +S SD+ V D NPL I A+ R W D P ERIS
Sbjct: 429 AQLLDRC-KSVEEAGVGFTLHSDFMVTDPNPLHMIEMAVTRRT--WKEPDYVLAPQERIS 485
Query: 516 LTDALIAHTLSAARACFLENDVGSLSPGKIADFVILSTSSWEDFAAEVSA-SIEATYVSG 574
+ A+ A T AA F ++++GSL PGK+AD VIL + E+ A + T++ G
Sbjct: 486 VDSAIRAMTSEAAWQLFSDHEIGSLEPGKLADMVILDQDPRKVAPDEIKAIKVLETWMDG 545
Query: 575 VQAY 578
+ +
Sbjct: 546 QRVF 549
|
|
| TIGR_CMR|SPO_A0316 SPO_A0316 "amidohydrolase domain protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)] | Back alignment and assigned GO terms |
|---|
Score = 443 (161.0 bits), Expect = 8.4e-42, P = 8.4e-42
Identities = 154/544 (28%), Positives = 245/544 (45%)
Query: 50 TNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSH 109
TN + T D A ++AI+ RI++VG+ + V+ A D V++L+GK V+PGFID+H
Sbjct: 19 TNANVLTVDAEFSTAQAIAIRGNRILAVGSDAEVRAAAGDDATVVDLEGKTVLPGFIDAH 78
Query: 110 VHFIPGGLQMARVKLRGVSH---KDEFVRRVKEAVKNSKKGSWIXXXXXXXXXXXXXXPM 166
H + G + A + G++ DE + + + G W+ +
Sbjct: 79 AHAVSGSVVDAIMDYVGMARFTTVDEVLNHIATRAAKTPAGDWLVFRNFDPAVQEGADAL 138
Query: 167 A-SWIDDITPHNPVWLSRMDGHMGLANSVALQLVGITNLSEDPNGGTIMKTSSGEPTGLL 225
+ +D I+ +P+++ GH+ ANS A ++ G+TN +P GG ++ + G TG +
Sbjct: 139 TFAELDPISTDHPIFILNASGHLAYANSRAFEVSGLTNDVPNPPGGEFVRDADGNLTGTI 198
Query: 226 ID-AAMKLILPWIPEVSVDXXXXXXXXXXXXXXXXGVTTVVDFGRYYPGESVQLSWEDFA 284
+ A I P + G+TTV + G Q S D
Sbjct: 199 KNNVAFLQIAENYPAMKQVNPVEGLLGLLGKWSQQGLTTVSELSL---GALAQ-SPAD-V 253
Query: 285 DVYQWASYSEKM--KIRVCLFFPL--ETWSSLADLINKTGHVLSDWVYLGGVKAFADGSL 340
V A+ S +M ++R F+ L ETW + A + G+ L+ + G K ADGS
Sbjct: 254 QVMAAAAQSGRMTARLRAYPFYTLGTETWDN-AGVKQGDGNALAR---VAGYKLVADGSN 309
Query: 341 GSNSALFHEPYADEPHNYGLQVMELESLLSMTMASDKSGLQVAIHAIGDRANDLVLDMYK 400
+ L EPY + + GL ME + L + + G +AIH GD A D +LD +
Sbjct: 310 QGFTGLQREPYLNR-EDRGLAYMEPDELTTTALERAGKGWHLAIHGNGDAAIDNILDTCQ 368
Query: 401 SVV-VTTGKRDQRFRIEHAQHLASGTAARFGDQGIVASMQPQHLLDDADSARKKL-GVDR 458
++ R RIEH L AR G+ AS H+ + R ++ G+++
Sbjct: 369 ALADAGIDMARVRPRIEHCSILHDEQIARMKALGVSASFLIGHVHYWGVAMRDQVFGLEK 428
Query: 459 AERESYLFQSXXXXXXXXXXGSDWPVADINPLCAIRTAMKRIPPGW---DNAWIPSERIS 515
A+ +S SD+ V D NPL I A+ R W D P ERIS
Sbjct: 429 AQLLDRC-KSVEEAGVGFTLHSDFMVTDPNPLHMIEMAVTRRT--WKEPDYVLAPQERIS 485
Query: 516 LTDALIAHTLSAARACFLENDVGSLSPGKIADFVILSTSSWEDFAAEVSA-SIEATYVSG 574
+ A+ A T AA F ++++GSL PGK+AD VIL + E+ A + T++ G
Sbjct: 486 VDSAIRAMTSEAAWQLFSDHEIGSLEPGKLADMVILDQDPRKVAPDEIKAIKVLETWMDG 545
Query: 575 VQAY 578
+ +
Sbjct: 546 QRVF 549
|
|
| UNIPROTKB|Q81KU4 BAS4541 "Uncharacterized protein" [Bacillus anthracis (taxid:1392)] | Back alignment and assigned GO terms |
|---|
Score = 265 (98.3 bits), Expect = 2.8e-39, Sum P(2) = 2.8e-39
Identities = 74/254 (29%), Positives = 115/254 (45%)
Query: 326 WVYLGGVKAFADGSLGSNSALFHEPYADEPHNYGLQVMELESLLSMTMASDKSGLQVAIH 385
++ G +K F+DGS G +AL EPY D G+ + E L + + + VAIH
Sbjct: 269 YIEFGAMKIFSDGSFGGRTALLSEPYEDAKETNGVAIFSREELAELVKKARDLHMPVAIH 328
Query: 386 AIGDRANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLASGTAARFGDQGIVASMQPQHLLD 445
IGD + + V+D+ + G RD RI H Q R + + +QP +
Sbjct: 329 TIGDLSLEYVIDVLELYPPAEGLRD---RIIHCQLAREELIERMKNLQAIIDIQPVFVSS 385
Query: 446 DADSARKKLGVDRAERESYLFQSXXXXXXXXXXGSDWPVADINPLCAIRTAMKRIPPGWD 505
D S +KLG R R +Y +++ GSD P+ +NP I +A+ R
Sbjct: 386 DFPSVIEKLGEQRL-RYAYAWKTLLEAGLHCNGGSDAPIEQVNPFLGIYSAVTRRSFIDG 444
Query: 506 NAWIPSERISLTDALIAHTLSAARACFLENDVGSLSPGKIADFVILSTSSWEDFAAEVS- 564
++P ER+++ +A+ T +A A E G ++ G ADF IL +E A E+
Sbjct: 445 LCYMPEERLTVYEAVSLFTTGSAYAIGKEAKRGQITKGYEADFTILDRDIFEIEAEEIKE 504
Query: 565 ASIEATYVSGVQAY 578
E T + G Y
Sbjct: 505 VQAEMTVIDGQVVY 518
|
|
| TIGR_CMR|BA_4894 BA_4894 "conserved hypothetical protein" [Bacillus anthracis str. Ames (taxid:198094)] | Back alignment and assigned GO terms |
|---|
Score = 265 (98.3 bits), Expect = 2.8e-39, Sum P(2) = 2.8e-39
Identities = 74/254 (29%), Positives = 115/254 (45%)
Query: 326 WVYLGGVKAFADGSLGSNSALFHEPYADEPHNYGLQVMELESLLSMTMASDKSGLQVAIH 385
++ G +K F+DGS G +AL EPY D G+ + E L + + + VAIH
Sbjct: 269 YIEFGAMKIFSDGSFGGRTALLSEPYEDAKETNGVAIFSREELAELVKKARDLHMPVAIH 328
Query: 386 AIGDRANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLASGTAARFGDQGIVASMQPQHLLD 445
IGD + + V+D+ + G RD RI H Q R + + +QP +
Sbjct: 329 TIGDLSLEYVIDVLELYPPAEGLRD---RIIHCQLAREELIERMKNLQAIIDIQPVFVSS 385
Query: 446 DADSARKKLGVDRAERESYLFQSXXXXXXXXXXGSDWPVADINPLCAIRTAMKRIPPGWD 505
D S +KLG R R +Y +++ GSD P+ +NP I +A+ R
Sbjct: 386 DFPSVIEKLGEQRL-RYAYAWKTLLEAGLHCNGGSDAPIEQVNPFLGIYSAVTRRSFIDG 444
Query: 506 NAWIPSERISLTDALIAHTLSAARACFLENDVGSLSPGKIADFVILSTSSWEDFAAEVS- 564
++P ER+++ +A+ T +A A E G ++ G ADF IL +E A E+
Sbjct: 445 LCYMPEERLTVYEAVSLFTTGSAYAIGKEAKRGQITKGYEADFTILDRDIFEIEAEEIKE 504
Query: 565 ASIEATYVSGVQAY 578
E T + G Y
Sbjct: 505 VQAEMTVIDGQVVY 518
|
|
| ASPGD|ASPL0000004201 AN10795 [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
Score = 401 (146.2 bits), Expect = 2.4e-37, P = 2.4e-37
Identities = 141/533 (26%), Positives = 238/533 (44%)
Query: 64 ADS-MAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHFIPGGLQMARV 122
AD+ + +++ I+ VG+ +Q A +NL G+ V+PGFID H+H + G ++++
Sbjct: 21 ADTCLLVEDESIIYVGS----EQDAPASDKQVNLAGRRVLPGFIDGHMHLLLFGSSLSKI 76
Query: 123 KLRGVSHKDEFVRRVKEAVKNSKKGSWIXXXXXX-XXXXXXXXPMASWIDDITPHN-PVW 180
L G + E +++A + ++ +AS +DD+ PH P++
Sbjct: 77 SLAGCTSLSEIQSTIRDAATSRSPTTYPRLFCSGWMHSMTDGQALASDLDDLDPHGRPIF 136
Query: 181 LSRMDGHMGLANSVALQLVGITNLSEDPNGGTIMKTSSGEPTGLLID-AAMKLILPWIPE 239
+ D H N+ AL +GI + P GG I + + G PTGLL + AA+ ++ P +
Sbjct: 137 IDAKDLHSAWCNTAALTDLGIDKSTPTPAGGDIARDNDGNPTGLLSESAAVTIVWPHVAR 196
Query: 240 VSV-DXXXXXXXXXXXXXXXXGVTTVVDFGRYYPGESVQLSWEDFADVYQWASYSEKMKI 298
V+ + G T +V+ E++ + + + S+S ++ +
Sbjct: 197 VATTNEKKEYVKDAIRAYNAAGYTGMVEMAT---DENIFETARQLRE-QEPESFSIRLAM 252
Query: 299 RVCLFFPLETWSS-LA------DLINKTGHVLSDWVYLGGVKAFADGSLGSNSALFHEPY 351
L P + LA +L K S + G+K DG + + +A EPY
Sbjct: 253 H-WLITPAASEEEVLAQVDRAIELHEKYNKETSSDFRIAGIKVICDGVVDACTAALLEPY 311
Query: 352 ADEPHNYGLQVMEL----ESLL-SMTMASDKSGLQVAIHAIGDRANDLVLDMYKSVVVTT 406
N E +L + +D + LQVA+HAIGD A L ++ ++V
Sbjct: 312 TAGLSNTASTASPAPLWEEGILRKVVQRADGARLQVALHAIGDAAVALAINTLETVEPRP 371
Query: 407 GKRDQRFRIEHAQHLASGTAARFGDQGIVASMQPQHLLDDA--DSARKKLGVDRAERESY 464
G + +R RIEH + + A+R GI AS+QP H D A + + LG +R R ++
Sbjct: 372 GSQSRRHRIEHLELTSPSDASRLASLGITASIQPVHA-DPAILRAWPRLLGPERVRR-AF 429
Query: 465 LFQSXXXXXXXXXXGSDWPVADINPLCAIRTAMKRIP---PGWDNAWIPSERISLTDALI 521
++ G+D P A + L + TA R P ++SL A+
Sbjct: 430 AYREFAEAGANVAIGTDAPTAPHSALRNLYTATTRRSAREPECQETVNEGFKLSLVQAIS 489
Query: 522 AHTLSAARACFLENDVGSLSPGKIADFVILSTSSWEDFAAEVSASIEATYVSG 574
A T +AA +CF ++ G+L GK ADFV+L W + + A + TY G
Sbjct: 490 AATRNAAYSCFADDVTGALEVGKKADFVVLDMQ-WNENKL-LEARVVKTYFQG 540
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| O34355 | YTCJ_BACSU | 3, ., 5, ., -, ., - | 0.3105 | 0.8721 | 0.9546 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 579 | |||
| cd01300 | 479 | cd01300, YtcJ_like, YtcJ_like metal dependent amid | 1e-178 | |
| COG1574 | 535 | COG1574, COG1574, Predicted metal-dependent hydrol | 1e-139 | |
| pfam07969 | 392 | pfam07969, Amidohydro_3, Amidohydrolase family | 4e-53 | |
| cd01292 | 275 | cd01292, metallo-dependent_hydrolases, Superfamily | 8e-18 | |
| cd01297 | 415 | cd01297, D-aminoacylase, D-aminoacylases (N-acyl-D | 1e-10 | |
| PRK09228 | 433 | PRK09228, PRK09228, guanine deaminase; Provisional | 3e-10 | |
| PRK09356 | 406 | PRK09356, PRK09356, imidazolonepropionase; Validat | 8e-10 | |
| pfam13594 | 66 | pfam13594, Amidohydro_5, Amidohydrolase | 1e-09 | |
| cd01296 | 371 | cd01296, Imidazolone-5PH, Imidazolonepropionase/im | 4e-09 | |
| cd01314 | 447 | cd01314, D-HYD, D-hydantoinases (D-HYD) also calle | 4e-09 | |
| cd01315 | 447 | cd01315, L-HYD_ALN, L-Hydantoinases (L-HYDs) and A | 7e-09 | |
| PRK08323 | 459 | PRK08323, PRK08323, phenylhydantoinase; Validated | 8e-09 | |
| cd01309 | 359 | cd01309, Met_dep_hydrolase_C, Metallo-dependent hy | 1e-08 | |
| TIGR02967 | 401 | TIGR02967, guan_deamin, guanine deaminase | 1e-08 | |
| COG1001 | 584 | COG1001, AdeC, Adenine deaminase [Nucleotide trans | 1e-07 | |
| cd01298 | 411 | cd01298, ATZ_TRZ_like, TRZ/ATZ family contains enz | 2e-07 | |
| pfam01979 | 307 | pfam01979, Amidohydro_1, Amidohydrolase family | 2e-07 | |
| COG0402 | 421 | COG0402, SsnA, Cytosine deaminase and related meta | 2e-07 | |
| PRK10657 | 388 | PRK10657, PRK10657, isoaspartyl dipeptidase; Provi | 6e-07 | |
| PRK13404 | 477 | PRK13404, PRK13404, dihydropyrimidinase; Provision | 6e-07 | |
| TIGR01178 | 552 | TIGR01178, ade, adenine deaminase | 7e-07 | |
| COG3653 | 579 | COG3653, COG3653, N-acyl-D-aspartate/D-glutamate d | 8e-07 | |
| PRK09237 | 380 | PRK09237, PRK09237, dihydroorotase; Provisional | 9e-07 | |
| COG1228 | 406 | COG1228, HutI, Imidazolonepropionase and related a | 1e-06 | |
| cd01296 | 371 | cd01296, Imidazolone-5PH, Imidazolonepropionase/im | 2e-06 | |
| COG1228 | 406 | COG1228, HutI, Imidazolonepropionase and related a | 2e-06 | |
| TIGR03178 | 443 | TIGR03178, allantoinase, allantoinase | 2e-06 | |
| PRK12394 | 379 | PRK12394, PRK12394, putative metallo-dependent hyd | 2e-06 | |
| PRK13207 | 568 | PRK13207, ureC, urease subunit alpha; Reviewed | 2e-06 | |
| COG0804 | 568 | COG0804, UreC, Urea amidohydrolase (urease) alpha | 4e-06 | |
| COG0044 | 430 | COG0044, PyrC, Dihydroorotase and related cyclic a | 5e-06 | |
| PRK06038 | 430 | PRK06038, PRK06038, N-ethylammeline chlorohydrolas | 7e-06 | |
| PRK09228 | 433 | PRK09228, PRK09228, guanine deaminase; Provisional | 8e-06 | |
| PRK06189 | 451 | PRK06189, PRK06189, allantoinase; Provisional | 1e-05 | |
| TIGR01224 | 377 | TIGR01224, hutI, imidazolonepropionase | 1e-05 | |
| cd00854 | 374 | cd00854, NagA, N-acetylglucosamine-6-phosphate dea | 2e-05 | |
| TIGR01792 | 567 | TIGR01792, urease_alph, urease, alpha subunit | 2e-05 | |
| PRK09357 | 423 | PRK09357, pyrC, dihydroorotase; Validated | 2e-05 | |
| cd00375 | 567 | cd00375, Urease_alpha, Urease alpha-subunit; Ureas | 2e-05 | |
| COG3964 | 386 | COG3964, COG3964, Predicted amidohydrolase [Genera | 3e-05 | |
| PRK09060 | 444 | PRK09060, PRK09060, dihydroorotase; Validated | 3e-05 | |
| COG1820 | 380 | COG1820, NagA, N-acetylglucosamine-6-phosphate dea | 4e-05 | |
| TIGR01975 | 389 | TIGR01975, isoAsp_dipep, isoaspartyl dipeptidase I | 4e-05 | |
| cd01303 | 429 | cd01303, GDEase, Guanine deaminase (GDEase) | 5e-05 | |
| PRK07203 | 442 | PRK07203, PRK07203, putative chlorohydrolase/amino | 5e-05 | |
| cd01308 | 387 | cd01308, Isoaspartyl-dipeptidase, Isoaspartyl dipe | 6e-05 | |
| PRK09356 | 406 | PRK09356, PRK09356, imidazolonepropionase; Validat | 7e-05 | |
| cd00854 | 374 | cd00854, NagA, N-acetylglucosamine-6-phosphate dea | 8e-05 | |
| PRK08204 | 449 | PRK08204, PRK08204, hypothetical protein; Provisio | 8e-05 | |
| PRK08044 | 449 | PRK08044, PRK08044, allantoinase; Provisional | 2e-04 | |
| PRK05985 | 391 | PRK05985, PRK05985, cytosine deaminase; Provisiona | 2e-04 | |
| PRK02382 | 443 | PRK02382, PRK02382, dihydroorotase; Provisional | 3e-04 | |
| PRK07228 | 445 | PRK07228, PRK07228, N-ethylammeline chlorohydrolas | 3e-04 | |
| TIGR01224 | 377 | TIGR01224, hutI, imidazolonepropionase | 4e-04 | |
| PRK13985 | 568 | PRK13985, ureB, urease subunit beta; Provisional | 4e-04 | |
| TIGR02033 | 454 | TIGR02033, D-hydantoinase, D-hydantoinase | 4e-04 | |
| cd01293 | 398 | cd01293, Bact_CD, Bacterial cytosine deaminase and | 4e-04 | |
| PRK09061 | 509 | PRK09061, PRK09061, D-glutamate deacylase; Validat | 5e-04 | |
| cd01295 | 422 | cd01295, AdeC, Adenine deaminase (AdeC) directly d | 5e-04 | |
| PRK13308 | 569 | PRK13308, ureC, urease subunit alpha; Reviewed | 5e-04 | |
| PRK08203 | 451 | PRK08203, PRK08203, hydroxydechloroatrazine ethyla | 6e-04 | |
| PRK07572 | 426 | PRK07572, PRK07572, cytosine deaminase; Validated | 6e-04 | |
| TIGR00857 | 411 | TIGR00857, pyrC_multi, dihydroorotase, multifuncti | 7e-04 | |
| PRK09059 | 429 | PRK09059, PRK09059, dihydroorotase; Validated | 7e-04 | |
| PRK09045 | 443 | PRK09045, PRK09045, N-ethylammeline chlorohydrolas | 8e-04 | |
| TIGR03583 | 365 | TIGR03583, EF_0837, probable amidohydrolase EF_083 | 8e-04 | |
| COG1820 | 380 | COG1820, NagA, N-acetylglucosamine-6-phosphate dea | 0.001 | |
| cd01307 | 338 | cd01307, Met_dep_hydrolase_B, Metallo-dependent hy | 0.001 | |
| PRK08393 | 424 | PRK08393, PRK08393, N-ethylammeline chlorohydrolas | 0.001 | |
| cd01299 | 342 | cd01299, Met_dep_hydrolase_A, Metallo-dependent hy | 0.001 | |
| PRK11170 | 382 | PRK11170, nagA, N-acetylglucosamine-6-phosphate de | 0.002 | |
| PRK04250 | 398 | PRK04250, PRK04250, dihydroorotase; Provisional | 0.002 | |
| TIGR02967 | 401 | TIGR02967, guan_deamin, guanine deaminase | 0.003 | |
| PRK08204 | 449 | PRK08204, PRK08204, hypothetical protein; Provisio | 0.003 | |
| PLN02303 | 837 | PLN02303, PLN02303, urease | 0.003 | |
| PRK09236 | 444 | PRK09236, PRK09236, dihydroorotase; Reviewed | 0.003 | |
| TIGR03314 | 441 | TIGR03314, Se_ssnA, putative selenium metabolism p | 0.003 | |
| PRK10027 | 588 | PRK10027, PRK10027, cryptic adenine deaminase; Pro | 0.003 | |
| PLN02795 | 505 | PLN02795, PLN02795, allantoinase | 0.004 |
| >gnl|CDD|238625 cd01300, YtcJ_like, YtcJ_like metal dependent amidohydrolases | Back alignment and domain information |
|---|
Score = 511 bits (1318), Expect = e-178
Identities = 209/487 (42%), Positives = 290/487 (59%), Gaps = 12/487 (2%)
Query: 67 MAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHFIPGGLQMARVKLRG 126
+A+++GRIV+VG+ + + L T V++L+GK V+PGFIDSH H + GGL + + L G
Sbjct: 2 VAVRDGRIVAVGSDAEAKALKGPATEVIDLKGKTVLPGFIDSHSHLLLGGLSLLWLDLSG 61
Query: 127 VSHKDEFVRRVKEAVKNSKKGSWILGGGWNNDLWGGD-LPMASWIDDITPHNPVWLSRMD 185
V+ K+E + R++E + G WILG GW+ L G P + +D ++P PV L R D
Sbjct: 62 VTSKEEALARIREDAAAAPPGEWILGFGWDESLLGEGRYPTRAELDAVSPDRPVLLLRRD 121
Query: 186 GHMGLANSVALQLVGITNLSEDPNGGTIMKTSSGEPTGLLIDAAMKLILPWIPEVSVDER 245
GH NS AL+L GIT + DP GG I++ + GEPTG+L++AA L+L +P + +ER
Sbjct: 122 GHSAWVNSAALRLAGITRDTPDPPGGEIVRDADGEPTGVLVEAAAALVLEAVPPPTPEER 181
Query: 246 REALLRASNLALSRGVTTVVDFGRYYPGESVQLSWEDFADVYQWASYSE-KMKIRVCLFF 304
R AL A+ S GVTTV D G D + A+ E +++RV L+
Sbjct: 182 RAALRAAARELASLGVTTVHDAGGGAAD--------DIEAYRRLAAAGELTLRVRVALYV 233
Query: 305 PLETWSSLADLINKTGHVLSDWVYLGGVKAFADGSLGSNSALFHEPYADEPHNYGLQVME 364
L +L + D + LGGVK FADGSLGS +A EPY D P GL ++
Sbjct: 234 SPLAEDLLEELGARKNGAGDDRLRLGGVKLFADGSLGSRTAALSEPYLDSPGTGGLLLIS 293
Query: 365 LESLLSMTMASDKSGLQVAIHAIGDRANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLASG 424
E L + A+D++GLQVAIHAIGDRA D VLD ++ + + D R RIEHAQ ++
Sbjct: 294 PEELEELVRAADEAGLQVAIHAIGDRAVDTVLDALEAALKDNPRADHRHRIEHAQLVSPD 353
Query: 425 TAARFGDQGIVASMQPQHLLDDADSA-RKKLGVDRAERESYLFQSLLANNALLALGSDWP 483
RF G++AS+QP HL D D+A ++LG +RA+R SY F+SLL +ALGSD P
Sbjct: 354 DIPRFAKLGVIASVQPNHLYSDGDAAEDRRLGEERAKR-SYPFRSLLDAGVPVALGSDAP 412
Query: 484 VADINPLCAIRTAMKRIPPGWDNAWIPSERISLTDALIAHTLSAARACFLENDVGSLSPG 543
VA +PL I A+ R PG P ER+SL +AL A+T+ AA A E++ GSL PG
Sbjct: 413 VAPPDPLLGIWAAVTRKTPGGGVLGNPEERLSLEEALRAYTIGAAYAIGEEDEKGSLEPG 472
Query: 544 KIADFVI 550
K+ADFV+
Sbjct: 473 KLADFVV 479
|
YtcJ is a Bacillus subtilis ORF of unknown function. The Arabidopsis homolog LAF3 has been identified as a factor required for photochrome A signalling. Length = 479 |
| >gnl|CDD|224490 COG1574, COG1574, Predicted metal-dependent hydrolase with the TIM-barrel fold [General function prediction only] | Back alignment and domain information |
|---|
Score = 413 bits (1063), Expect = e-139
Identities = 204/539 (37%), Positives = 294/539 (54%), Gaps = 16/539 (2%)
Query: 45 ADLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPG 104
ADL++ NG I+T D++ A+++AIK+GRIV+VG+ + ++ LA T V++L+GK V+PG
Sbjct: 5 ADLILHNGRIYTMDEARPTAEAVAIKDGRIVAVGSDAELKALAGPATEVIDLKGKFVLPG 64
Query: 105 FIDSHVHFIPGGLQMARVKLRGVSHKDEFVRRVKEAVKNSKKGSWI--LGGGWNNDLWGG 162
F+D+H+H I GGL + + L GV D+ + ++ + G W+ +G GW+ W
Sbjct: 65 FVDAHLHLISGGLSLLELNLDGVRSLDDLLAALRRQAARTPPGQWVVVVGWGWDEQFWEE 124
Query: 163 DLPMASWIDDITPHNPVWLSRMDGHMGLANSVALQLVGITNLSEDPNGGTIMKTSSGEPT 222
LP + +D P +PV L R+DGH+ +ANS AL+L GIT + DP GG I + + GEPT
Sbjct: 125 RLPTLAELDAAAPDHPVLLIRLDGHVAVANSAALRLAGITRDTPDPPGGIIGRDADGEPT 184
Query: 223 GLLIDAAMKLILPWIPEVSVDERREAL-LRASNLALSRGVTTVVDFGRYYPGESVQLSWE 281
GLL++ A L+ P S E EA RA+ S G+T V D Y Q +
Sbjct: 185 GLLLENAQALVARLAPPPSPAEELEAAAARAARELNSLGITGVHDMAGY------QGYYA 238
Query: 282 DFADVYQWASYSEKMKIRV-CLFFPLETWSSLADLINKTGHVLSDWVYLGGVKAFADGSL 340
D+ Y+ + ++ +RV L F + DL+ +TG + GGVK FADGSL
Sbjct: 239 DYE-AYRALAAGGELPVRVALLLFTEDLKEERLDLLRQTG--AKGLLQGGGVKLFADGSL 295
Query: 341 GSNSALFHEPYADEPHNYGLQVMELESLLSMTMASDKSGLQVAIHAIGDRANDLVLDMYK 400
G +AL PYAD P G ++ E L + A+D+ GL VA+HAIGD A D LD ++
Sbjct: 296 GERTALLAAPYADGPGPSGELLLTEEELEELVRAADERGLPVAVHAIGDGAVDAALDAFE 355
Query: 401 SVVVTTGKRDQRFRIEHAQHLASGTAARFGDQGIVASMQPQHLLDDADSARKKLGVDRAE 460
G + R RIEHA+ ++ RF G++AS+QP L D + +LG +RA
Sbjct: 356 KARKKNGLKGLRHRIEHAELVSPDQIERFAKLGVIASVQPNFLFSDGEWYVDRLGEERAS 415
Query: 461 RESYLFQSLLANNALLALGSDWPVADINPLCAIRTAMKRIPPGWDNAWIPSERISLTDAL 520
R SY F+SLL LA GSD PV +P I A+ R PG P ER++ +AL
Sbjct: 416 R-SYPFRSLLKAGVPLAGGSDAPVEPYDPWLGIYAAVTRKTPG-GRVLGPEERLTREEAL 473
Query: 521 IAHTLSAARACFLENDVGSLSPGKIADFVILSTSSWEDFAAEVS-ASIEATYVSGVQAY 578
A+T A A E + GSL PGK+ADF +L + + + T V+G Y
Sbjct: 474 RAYTEGGAYASGAEGEKGSLEPGKLADFAVLDRDPFTVDPDSIKDTKVVLTIVAGKVVY 532
|
Length = 535 |
| >gnl|CDD|219672 pfam07969, Amidohydro_3, Amidohydrolase family | Back alignment and domain information |
|---|
Score = 185 bits (471), Expect = 4e-53
Identities = 135/466 (28%), Positives = 188/466 (40%), Gaps = 89/466 (19%)
Query: 100 VVVPGFIDSHVHFIPGGLQMAR-VKLRGVSHKDEFVRRVKEAVKNSKKGSWILGGGWNND 158
+V+PGF+D H H GL + R + L G + +++A +G GW+
Sbjct: 1 LVLPGFVDPHTHLDGTGLNLGRELDLSGTGSVAGGLALLRDAA---------VGHGWDEA 51
Query: 159 LWGGDLPMAS----WIDDITPHNPVWLSRMDGHMGLANSVALQLVGITNLSEDPNGGTIM 214
W + D +P NPV L R GH+ L NS AL L
Sbjct: 52 QWAERRYPETGADLVWDAASPDNPVLLHRECGHLALLNSAALDL---------------- 95
Query: 215 KTSSGEPTGLL---IDAAMKLILPWIPEVSVDERREALLRASNLALSRGVTTVVDFGRYY 271
++G PTG L + L + E L A + G+TT D +
Sbjct: 96 --AAGNPTGALRENAFVDLGLGALPATLADIAEMARILRAAIVELNALGITTGHDGAGFE 153
Query: 272 PGESVQLSWEDFADVYQWASYSEKMKIRVCLFFPLETWSSLADLINKTGHVLSDWVYLGG 331
G P E ++L L + GG
Sbjct: 154 AG-------------------------------PAELLAALRALAAEGK---------GG 173
Query: 332 VKAFADGSLGSNSALFHEP-YADEP----HNYGLQVMELESLLSMTMASDKSGLQVAIHA 386
VK F DG+ G +AL P YAD+P G + + E L + A+ +GLQV +HA
Sbjct: 174 VKIFVDGAPGGRTALLELPDYADKPGAPIDISGDPIDDAEELEELVAAAHAAGLQVRVHA 233
Query: 387 IGDRANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLASGTAARFGDQGIVASMQPQHLLDD 446
GD A D VL+ Y++V+ R+ HA + T R + G+ A QP L D
Sbjct: 234 SGDAAIDAVLNAYEAVLA------DLGRLIHAGVATTDTIDRAAELGLRADTQPHFLAYD 287
Query: 447 ADSARKKLGVDRAERESYLFQSLLANNALLALGSDWPVADINPLCAIRTAMKRIPPGW-- 504
R +LG +RA R S + LL +ALGSD PVA +P I A+ R
Sbjct: 288 GYWDRSRLGPERA-RGSLPIKLLLNAGVKVALGSDAPVATYDPWSGIGAAVMRRTAEMLE 346
Query: 505 DNAWIPSERISLTDALIAHTLSAARACFLENDVGSLSPGKIADFVI 550
P ER+SL +AL +T A A LE+ G+L+ GK AD VI
Sbjct: 347 GRVLKPDERLSLEEALALYTRGPAYALGLEDRKGTLAVGKDADLVI 392
|
Length = 392 |
| >gnl|CDD|238617 cd01292, metallo-dependent_hydrolases, Superfamily of metallo-dependent hydrolases (also called amidohydrolase superfamily) is a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site | Back alignment and domain information |
|---|
Score = 83.5 bits (206), Expect = 8e-18
Identities = 67/303 (22%), Positives = 98/303 (32%), Gaps = 49/303 (16%)
Query: 231 KLILPWIPEVSVDERREALLRASNLALSRGVTTVVDFGRYYPGESVQLSWEDFADVYQWA 290
L L E+S ++ E LRA L+ GVTTVVD G P + + V + A
Sbjct: 19 NLELKEAEELSPEDLYEDTLRALEALLAGGVTTVVDMGSTPPPTT---TKAAIEAVAEAA 75
Query: 291 SYSEKMKIRVCLFFPLETWSSLADLINKTGHVLSDWVYLGGVKAFADGSLGSNSALFHEP 350
S +++ + L P V D L LG+ P
Sbjct: 76 RASAGIRVVLGLGIP-----------GVPAAVDEDAEALLLELLRRGLELGAVGLKLAGP 124
Query: 351 YADEPHNYGLQVMELESLLSMTMASDKSGLQVAIHAI-GDRANDLVLDMYKSVVVTTGKR 409
Y + ESL + + K GL V IHA + D+ +
Sbjct: 125 YTATGLS-------DESLRRVLEEARKLGLPVVIHAGELPDPTRALEDLVA-----LLRL 172
Query: 410 DQRFRIEHAQHLASGTAARFGDQGIVASMQPQHLLDDADSARKKLGVDRAERESYLFQSL 469
R I H HL + G+ + P + R L
Sbjct: 173 GGRVVIGHVSHLDPELLELLKEAGVSLEVCPLSNYLLGRDGEGAEALRR----------L 222
Query: 470 LANNALLALGSDWPVA--DINPLCAIRTAMKRIPPGWDNAWIPSERISLTDALIAHTLSA 527
L + LG+D P + L +R +K + G SL +AL T++
Sbjct: 223 LELGIRVTLGTDGPPHPLGTDLLALLRLLLKVLRLGL----------SLEEALRLATINP 272
Query: 528 ARA 530
ARA
Sbjct: 273 ARA 275
|
The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The family includes urease alpha, adenosine deaminase, phosphotriesterase dihydroorotases, allantoinases, hydantoinases, AMP-, adenine and cytosine deaminases, imidazolonepropionase, aryldialkylphosphatase, chlorohydrolases, formylmethanofuran dehydrogenases and others. Length = 275 |
| >gnl|CDD|238622 cd01297, D-aminoacylase, D-aminoacylases (N-acyl-D-Amino acid amidohydrolases) catalyze the hydrolysis of N-acyl-D-amino acids to produce the corresponding D-amino acids, which are used as intermediates in the synthesis of pesticides, bioactive peptides, and antibiotics | Back alignment and domain information |
|---|
Score = 63.5 bits (155), Expect = 1e-10
Identities = 24/66 (36%), Positives = 35/66 (53%), Gaps = 5/66 (7%)
Query: 46 DLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGF 105
DLV+ NG + G + F + I++GRI ++G L+ V++ G VV PGF
Sbjct: 1 DLVIRNGTVVDGTGAPPFTADVGIRDGRIAAIGP-----ILSTSAREVIDAAGLVVAPGF 55
Query: 106 IDSHVH 111
ID H H
Sbjct: 56 IDVHTH 61
|
Length = 415 |
| >gnl|CDD|236419 PRK09228, PRK09228, guanine deaminase; Provisional | Back alignment and domain information |
|---|
Score = 62.1 bits (152), Expect = 3e-10
Identities = 16/46 (34%), Positives = 32/46 (69%)
Query: 67 MAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHF 112
+ +++GRIV+ G Y+ ++ V + +GK+++PGFID+H+H+
Sbjct: 34 LLVEDGRIVAAGPYAELRAQLPADAEVTDYRGKLILPGFIDTHIHY 79
|
Length = 433 |
| >gnl|CDD|236478 PRK09356, PRK09356, imidazolonepropionase; Validated | Back alignment and domain information |
|---|
Score = 60.6 bits (148), Expect = 8e-10
Identities = 33/95 (34%), Positives = 51/95 (53%), Gaps = 16/95 (16%)
Query: 45 ADLVVTNGVIFTGDDS-----LLFAD-SMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQG 98
ADL+ TN + T D + D ++AI++G+IV VG + + AA V++ G
Sbjct: 3 ADLLWTNAQLATMDGGGMGELGIIEDGAIAIEDGKIVWVGPEADL--PAAYAAEVIDAGG 60
Query: 99 KVVVPGFIDSHVHFIPGG-----LQMARVKLRGVS 128
K+V PG ID H H + GG ++ +L+GVS
Sbjct: 61 KLVTPGLIDCHTHLVFGGNRANEFEL---RLQGVS 92
|
Length = 406 |
| >gnl|CDD|222250 pfam13594, Amidohydro_5, Amidohydrolase | Back alignment and domain information |
|---|
Score = 54.2 bits (131), Expect = 1e-09
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 4/45 (8%)
Query: 68 AIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHF 112
I++G+I ++G L V++ +GK V+PG ID HVH
Sbjct: 2 LIEDGKIAAIGG----DDLPDAEAEVIDAEGKYVLPGLIDMHVHL 42
|
This family of enzymes are a part of a large metal dependent hydrolase superfamily. The family includes Adenine deaminase EC:3.5.4.2 that hydrolyses adenine to form hypoxanthine and ammonia. Adenine deaminases reaction is important for adenine utilisation as a purine and also as a nitrogen source. This family also includes dihydroorotase and N-acetylglucosamine-6-phosphate deacetylases, EC:3.5.1.25 These enzymes catalyze the reaction N-acetyl-D-glucosamine 6-phosphate + H2O <=> D-glucosamine 6-phosphate + acetate. This family includes the catalytic domain of urease alpha subunit. Dihydroorotases (EC:3.5.2.3) are also included. Length = 66 |
| >gnl|CDD|238621 cd01296, Imidazolone-5PH, Imidazolonepropionase/imidazolone-5-propionate hydrolase (Imidazolone-5PH) catalyzes the third step in the histidine degradation pathway, the hydrolysis of (S)-3-(5-oxo-4,5-dihydro-3H-imidazol-4-yl)propanoate to N-formimidoyl-L-glutamate | Back alignment and domain information |
|---|
Score = 58.4 bits (142), Expect = 4e-09
Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 8/69 (11%)
Query: 68 AIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHFIPGGLQMARV----- 122
AI++GRI +VG +++ ++ G+ V PG +D H H + G RV
Sbjct: 2 AIRDGRIAAVGPAASLPAPGPAAAEEIDAGGRAVTPGLVDCHTHLVFAG---DRVDEFAA 58
Query: 123 KLRGVSHKD 131
+L G S+++
Sbjct: 59 RLAGASYEE 67
|
In bacteria, the enzyme is part of histidine utilization (hut) operon. Length = 371 |
| >gnl|CDD|238639 cd01314, D-HYD, D-hydantoinases (D-HYD) also called dihydropyrimidases (DHPase) and related proteins; DHPases are a family of enzymes that catalyze the reversible hydrolytic ring opening of the amide bond in five- or six-membered cyclic diamides, like dihydropyrimidine or hydantoin | Back alignment and domain information |
|---|
Score = 58.4 bits (142), Expect = 4e-09
Identities = 24/66 (36%), Positives = 35/66 (53%), Gaps = 6/66 (9%)
Query: 47 LVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFI 106
L++ NG I T D S F + I++G+IV++G G V++ GK V+PG I
Sbjct: 1 LIIKNGTIVTADGS--FKADILIEDGKIVAIGPNLEAP----GGVEVIDATGKYVLPGGI 54
Query: 107 DSHVHF 112
D H H
Sbjct: 55 DPHTHL 60
|
The hydrolysis of dihydropyrimidines is the second step of reductive catabolism of pyrimidines in human. The hydrolysis of 5-substituted hydantoins in microorganisms leads to enantiomerically pure N-carbamyl amino acids, which are used for the production of antibiotics, peptide hormones, pyrethroids, and pesticides. HYDs are classified depending on their stereoselectivity. This family also includes collapsin response regulators (CRMPs), cytosolic proteins involved in neuronal differentiation and axonal guidance which have strong homology to DHPases, but lack most of the active site residues. Length = 447 |
| >gnl|CDD|238640 cd01315, L-HYD_ALN, L-Hydantoinases (L-HYDs) and Allantoinase (ALN); L-Hydantoinases are a member of the dihydropyrimidinase family, which catalyzes the reversible hydrolytic ring opening of dihydropyrimidines and hydantoins (five-membered cyclic diamides used in biotechnology) | Back alignment and domain information |
|---|
Score = 58.1 bits (141), Expect = 7e-09
Identities = 26/71 (36%), Positives = 39/71 (54%), Gaps = 7/71 (9%)
Query: 46 DLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGF 105
DLV+ NG + T D + +A+K G+I ++G A + V++ G VV+PG
Sbjct: 1 DLVIKNGRVVTPD--GVREADIAVKGGKIAAIGPDIAN----TEAEEVIDAGGLVVMPGL 54
Query: 106 IDSHVHFI-PG 115
ID+HVH PG
Sbjct: 55 IDTHVHINEPG 65
|
But L-HYDs differ by having an L-enantio specificity and by lacking activity on possible natural substrates such as dihydropyrimidines. Allantoinase catalyzes the hydrolytic cleavage of the five-member ring of allantoin (5-ureidohydantoin) to form allantoic acid. Length = 447 |
| >gnl|CDD|236240 PRK08323, PRK08323, phenylhydantoinase; Validated | Back alignment and domain information |
|---|
Score = 57.5 bits (140), Expect = 8e-09
Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 12/77 (15%)
Query: 46 DLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGF 105
++ NG + T DD+ AD + I++G+I ++G A G V++ GK V+PG
Sbjct: 2 STLIKNGTVVTADDTYK-AD-VLIEDGKIAAIG--------ANLGDEVIDATGKYVMPGG 51
Query: 106 IDSHVHF-IP-GGLQMA 120
ID H H +P GG +
Sbjct: 52 IDPHTHMEMPFGGTVSS 68
|
Length = 459 |
| >gnl|CDD|238634 cd01309, Met_dep_hydrolase_C, Metallo-dependent hydrolases, subgroup C is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site | Back alignment and domain information |
|---|
Score = 56.9 bits (138), Expect = 1e-08
Identities = 60/240 (25%), Positives = 95/240 (39%), Gaps = 54/240 (22%)
Query: 348 HEPYADEPHNYGLQVMELESLLSMTMASDKSGLQVAIHAIGDRANDL--VLDMYKSVVVT 405
++ + + + ++LE+LL + K + V IHA RA+D+ + + K
Sbjct: 165 YDLGKNAKKDPPERDLKLEALLPVL----KGEIPVRIHA--HRADDILTAIRIAK----- 213
Query: 406 TGKRDQRFRIEH---AQHLASGTAARFGDQGIVASMQPQHLLDDADSARKKLG--VDRAE 460
+ + IEH LA A GI P + KK+ D +
Sbjct: 214 --EFGIKITIEHGAEGYKLADELAKH----GIPVIYGPT------LTLPKKVEEVNDAID 261
Query: 461 RESYLFQSLLANNALLALGSDWPVADIN--PLCAIRTAMKRIPPGWDNAWIPSERISLTD 518
+YL + A+ SD PV +I L A A+K +S +
Sbjct: 262 TNAYLLK---KGGVAFAISSDHPVLNIRNLNLEA-AKAVK-------------YGLSYEE 304
Query: 519 ALIAHTLSAARACFLENDVGSLSPGKIADFVILSTSSWEDFAAEVSASIEATYVSGVQAY 578
AL A T++ A+ +E+ VGSL PGK AD V+ W E ++ E Y+ G Y
Sbjct: 305 ALKAITINPAKILGIEDRVGSLEPGKDADLVV-----WNGDPLEPTSKPEQVYIDGRLVY 359
|
The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown. Length = 359 |
| >gnl|CDD|132012 TIGR02967, guan_deamin, guanine deaminase | Back alignment and domain information |
|---|
Score = 56.9 bits (138), Expect = 1e-08
Identities = 20/54 (37%), Positives = 37/54 (68%), Gaps = 5/54 (9%)
Query: 59 DSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHF 112
D LL ++NGRIV+VG+Y+ +++ G + + +G +++PGFID+H+H+
Sbjct: 6 DGLLV-----VENGRIVAVGDYAELKETLPAGVEIDDYRGHLIMPGFIDTHIHY 54
|
This model describes guanine deaminase, which hydrolyzes guanine to xanthine and ammonia. Xanthine can then be converted to urate by xanthine dehydrogenase, and urate subsequently degraded. In some bacteria, the guanine deaminase gene is found near the xdhABC genes for xanthine dehydrogenase. Non-homologous forms of guanine deaminase also exist, as well as distantly related forms outside the scope of this model [Purines, pyrimidines, nucleosides, and nucleotides, Other]. Length = 401 |
| >gnl|CDD|223933 COG1001, AdeC, Adenine deaminase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Score = 54.2 bits (131), Expect = 1e-07
Identities = 28/71 (39%), Positives = 43/71 (60%), Gaps = 11/71 (15%)
Query: 44 EADLVVTNGVI---FTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKV 100
+ADLV+ NG I TG+ ++ +AI GRIV V + + A+ T V++ G+
Sbjct: 23 KADLVLKNGRIVDVVTGE---IYKGDIAIAGGRIVGV-----IGEYRAEATEVIDAAGRY 74
Query: 101 VVPGFIDSHVH 111
+VPGFID+H+H
Sbjct: 75 IVPGFIDAHLH 85
|
Length = 584 |
| >gnl|CDD|238623 cd01298, ATZ_TRZ_like, TRZ/ATZ family contains enzymes from the atrazine degradation pathway and related hydrolases | Back alignment and domain information |
|---|
Score = 53.4 bits (129), Expect = 2e-07
Identities = 23/67 (34%), Positives = 40/67 (59%), Gaps = 3/67 (4%)
Query: 47 LVVTNGVIFTGDDSLLFAD-SMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGF 105
+++ NG I T D + D + +++GRIV+VG A+ A V++ +GKVV+PG
Sbjct: 1 ILIRNGTIVTTDPRRVLEDGDVLVEDGRIVAVG--PALPLPAYPADEVIDAKGKVVMPGL 58
Query: 106 IDSHVHF 112
+++H H
Sbjct: 59 VNTHTHL 65
|
Atrazine, a chlorinated herbizide, can be catabolized by a variety of different bacteria. The first three steps of the atrazine dehalogenation pathway are catalyzed by atrazine chlorohydrolase (AtzA), hydroxyatrazine ethylaminohydrolase (AtzB), and N-isopropylammelide N-isopropylaminohydrolase (AtzC). All three enzymes belong to the superfamily of metal dependent hydrolases. AtzA and AtzB, beside other related enzymes are represented in this CD. Length = 411 |
| >gnl|CDD|216825 pfam01979, Amidohydro_1, Amidohydrolase family | Back alignment and domain information |
|---|
Score = 52.6 bits (126), Expect = 2e-07
Identities = 53/328 (16%), Positives = 98/328 (29%), Gaps = 49/328 (14%)
Query: 238 PEVSVDERREALLRASNLALSRGVTTVVDFGRYYPGESVQLSWEDFADVYQWASYSEKMK 297
P + ++ EA+L + L G TTV+D S ++ + + + K++
Sbjct: 16 PLLRGEDSYEAILTGAKAMLRSGTTTVLDTPTSANT-----SIPLRKEIMEGLAAAPKLE 70
Query: 298 IRVCLFFPLETWSSLADLINKTGHVLSDWVYLG--GVKAFADGSLGSNSALFHEPYADEP 355
V L A+L + G +K DG + + P
Sbjct: 71 PNVELLLKGSV-GGRAELGEVVIDGAGEEAKAGADLIKVIEDGGKTAKAIDGVLPALAPH 129
Query: 356 HNYGLQVMELES---LLSMTMASDKSGLQVAIHAIGDRANDLVLDMYKSVVVTTGKRDQR 412
+ L++ L T ++K GL V IHA +
Sbjct: 130 DPPTVSHEGLKNEVELAEETEEAEKLGLLVHIHAAEASGEVNAIL------------GGV 177
Query: 413 FRIEHAQHLASGTAARFGDQG------IVASMQPQHLLDDADSARKKL-GVDRAERESY- 464
+ H HL + G +++ H G+
Sbjct: 178 DLLAHCLHLDDEAIELLKEAGSGIAHCPLSNESILHRGGRFSLMSGDAQGIGELGSGGAR 237
Query: 465 LFQSLLANNALLALGSDWPVADINPLCAIRTAMKRIPPGWDNAWIPSERISLTDALIAHT 524
L + + + + + +S +AL T
Sbjct: 238 LARLADKGGVVGLGTDGAGLNGKDFYL------------------DPDGLSPIEALRMAT 279
Query: 525 LSAARACFLENDVGSLSPGKIADFVILS 552
++ A+A L++ VGS+ GK AD V++
Sbjct: 280 INPAKALGLDDRVGSIEVGKDADLVVVD 307
|
This family of enzymes are a a large metal dependent hydrolase superfamily. The family includes Adenine deaminase EC:3.5.4.2 that hydrolyses adenine to form hypoxanthine and ammonia. Adenine deaminases reaction is important for adenine utilisation as a purine and also as a nitrogen source. This family also includes dihydroorotase and N-acetylglucosamine-6-phosphate deacetylases, EC:3.5.1.25 These enzymes catalyze the reaction N-acetyl-D-glucosamine 6-phosphate + H2O <=> D-glucosamine 6-phosphate + acetate. This family includes the catalytic domain of urease alpha subunit. Dihydroorotases (EC:3.5.2.3) are also included. Length = 307 |
| >gnl|CDD|223479 COG0402, SsnA, Cytosine deaminase and related metal-dependent hydrolases [Nucleotide transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Score = 52.8 bits (127), Expect = 2e-07
Identities = 18/68 (26%), Positives = 37/68 (54%), Gaps = 5/68 (7%)
Query: 46 DLVVTNGVIFTGDDSLLFADS-MAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPG 104
L++ ++ T D D + I++G+IV++G + V++ +GK+V+PG
Sbjct: 3 MLLIRGDLLLTNDPEGRIEDGDLVIEDGKIVAIGANAE----GPPDEEVIDAKGKLVLPG 58
Query: 105 FIDSHVHF 112
F+++H H
Sbjct: 59 FVNAHTHL 66
|
Length = 421 |
| >gnl|CDD|182623 PRK10657, PRK10657, isoaspartyl dipeptidase; Provisional | Back alignment and domain information |
|---|
Score = 51.7 bits (125), Expect = 6e-07
Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 69 IKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHFIPGG 116
I G+I+++ + + V++ GK++VPGFID HVH I GG
Sbjct: 23 IAGGKIIAIADNINIPD-IVPDIEVIDASGKILVPGFIDQHVHIIGGG 69
|
Length = 388 |
| >gnl|CDD|184033 PRK13404, PRK13404, dihydropyrimidinase; Provisional | Back alignment and domain information |
|---|
Score = 52.0 bits (125), Expect = 6e-07
Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 11/78 (14%)
Query: 46 DLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGF 105
DLV+ G + T D+ F + I+ GRI ++G + L G ++ G++V+PG
Sbjct: 5 DLVIRGGTVVTATDT--FQADIGIRGGRIAALG-----EGLGP-GAREIDATGRLVLPGG 56
Query: 106 IDSHVHF---IPGGLQMA 120
+DSH H G+ MA
Sbjct: 57 VDSHCHIDQPSGDGIMMA 74
|
Length = 477 |
| >gnl|CDD|130246 TIGR01178, ade, adenine deaminase | Back alignment and domain information |
|---|
Score = 51.7 bits (124), Expect = 7e-07
Identities = 24/69 (34%), Positives = 36/69 (52%), Gaps = 14/69 (20%)
Query: 46 DLVVTNGVI---FTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVV 102
D+V+ N I + G+ + +AI NG I VG Y+ V+ + A G+ V
Sbjct: 1 DIVIKNAKIIDVYNGE---IIPGDIAIANGHIAGVGKYNGVKVIDA--------LGEYAV 49
Query: 103 PGFIDSHVH 111
PGFID+H+H
Sbjct: 50 PGFIDAHIH 58
|
The family described by this model includes an experimentally characterized adenine deaminase of Bacillus subtilis. It also include a member from Methanobacterium thermoautotrophicum, in which adenine deaminase activity has been detected [Purines, pyrimidines, nucleosides, and nucleotides, Salvage of nucleosides and nucleotides]. Length = 552 |
| >gnl|CDD|226179 COG3653, COG3653, N-acyl-D-aspartate/D-glutamate deacylase [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 51.5 bits (123), Expect = 8e-07
Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
Query: 44 EADLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVP 103
D+V+ +G+IF G + F + I++G I +V ++ G++V P
Sbjct: 5 TYDVVIRDGLIFDGTGNPPFTTDVGIRDGVIAAVA---KGALDGTGCPEEVDAAGRIVAP 61
Query: 104 GFIDSHVHF 112
GFID H H+
Sbjct: 62 GFIDVHTHY 70
|
Length = 579 |
| >gnl|CDD|236423 PRK09237, PRK09237, dihydroorotase; Provisional | Back alignment and domain information |
|---|
Score = 51.0 bits (123), Expect = 9e-07
Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
Query: 68 AIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHFIPGG 116
AI++G+I +V + V++L G V PG+ID HVH PG
Sbjct: 22 AIEDGKIAAVAG----DIDGSQAKKVIDLSGLYVSPGWIDLHVHVYPGS 66
|
Length = 380 |
| >gnl|CDD|224149 COG1228, HutI, Imidazolonepropionase and related amidohydrolases [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 50.4 bits (121), Expect = 1e-06
Identities = 21/75 (28%), Positives = 33/75 (44%), Gaps = 3/75 (4%)
Query: 68 AIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHFIPGGLQMARVKLRGV 127
I++G+IV+VG G V++ +GK V PG ID+H H GG + +LR
Sbjct: 32 LIEDGKIVAVGPEEID---IPAGAEVIDAKGKTVTPGLIDAHTHLGFGGSRGGEFELREA 88
Query: 128 SHKDEFVRRVKEAVK 142
+ +
Sbjct: 89 GASYTEILAAGGGIL 103
|
Length = 406 |
| >gnl|CDD|238621 cd01296, Imidazolone-5PH, Imidazolonepropionase/imidazolone-5-propionate hydrolase (Imidazolone-5PH) catalyzes the third step in the histidine degradation pathway, the hydrolysis of (S)-3-(5-oxo-4,5-dihydro-3H-imidazol-4-yl)propanoate to N-formimidoyl-L-glutamate | Back alignment and domain information |
|---|
Score = 50.3 bits (121), Expect = 2e-06
Identities = 23/48 (47%), Positives = 29/48 (60%)
Query: 513 RISLTDALIAHTLSAARACFLENDVGSLSPGKIADFVILSTSSWEDFA 560
R++ +AL A T++AA A L VGSL GK AD VIL S+E A
Sbjct: 309 RMTPEEALTAATINAAAALGLGETVGSLEVGKQADLVILDAPSYEHLA 356
|
In bacteria, the enzyme is part of histidine utilization (hut) operon. Length = 371 |
| >gnl|CDD|224149 COG1228, HutI, Imidazolonepropionase and related amidohydrolases [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 2e-06
Identities = 45/206 (21%), Positives = 74/206 (35%), Gaps = 41/206 (19%)
Query: 379 GLQVAIHAIGDRANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLASGTAARFGDQGI---V 435
G+ V HA G L + + + EH L TAA ++G V
Sbjct: 233 GIPVKAHAHGADGIKLAIRLG---AKS---------AEHGTLLDHETAALLAEKGAGTPV 280
Query: 436 ASMQPQHLLDDADSARKKLGVDRAERESYLFQSLLANNALLALGSDWPVADINPLCAIRT 495
+ P+ + + K A + L+ +A+G+D ++
Sbjct: 281 PVLLPRTKFELRELDYK-----PARK-------LIDAGVKVAIGTDHNPG--TSHGSLAL 326
Query: 496 AMKRIPPGWDNAWIPSER-ISLTDALIAHTLSAARACFLENDVGSLSPGKIADFVILSTS 554
M + ++ +AL A T++AA+A L + VGSL PGK AD V+
Sbjct: 327 EM----------ALAVRLGMTPEEALKAATINAAKALGLADKVGSLEPGKDADLVVWDGD 376
Query: 555 SWEDFAAEVSAS-IEATYVSGVQAYP 579
D + + +EA G Y
Sbjct: 377 PLADIPYFLGLNKVEAVIKDGKVVYE 402
|
Length = 406 |
| >gnl|CDD|163175 TIGR03178, allantoinase, allantoinase | Back alignment and domain information |
|---|
Score = 50.1 bits (120), Expect = 2e-06
Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 7/67 (10%)
Query: 46 DLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGF 105
DL++ G + + AD + +K G+I ++G +++ G VV PG
Sbjct: 1 DLIIRGGRVIL-PNGEREAD-VGVKGGKIAAIGPDIL-----GPAAKIIDAGGLVVFPGV 53
Query: 106 IDSHVHF 112
+D+HVH
Sbjct: 54 VDTHVHI 60
|
This enzyme carries out the first step in the degradation of allantoin, a ring-opening hydrolysis. The seed members of this model are all in the vicinity of other genes involved in the processes of xanthine/urate/allantoin catabolism. Although not included in the seed, many eukaryotic homologs of this family are included above the trusted cutoff. Below the noise cutoff are related hydantoinases. Length = 443 |
| >gnl|CDD|183497 PRK12394, PRK12394, putative metallo-dependent hydrolase; Provisional | Back alignment and domain information |
|---|
Score = 49.8 bits (119), Expect = 2e-06
Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 5/71 (7%)
Query: 46 DLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGF 105
D+++TNG I ++ +++ I N IV Y + T +++ G +V PG
Sbjct: 4 DILITNGHIIDPARNINEINNLRIINDIIVDADKYPVASE-----TRIIHADGCIVTPGL 58
Query: 106 IDSHVHFIPGG 116
ID H H G
Sbjct: 59 IDYHAHVFYDG 69
|
Length = 379 |
| >gnl|CDD|237305 PRK13207, ureC, urease subunit alpha; Reviewed | Back alignment and domain information |
|---|
Score = 50.2 bits (121), Expect = 2e-06
Identities = 28/77 (36%), Positives = 42/77 (54%), Gaps = 12/77 (15%)
Query: 45 ADLVVTNGVIF--TGDDSLLFADSMAIKNGRIVSVGN------YSAVQQLAADGTNVLNL 96
D V+TN +I G ++ AD + IK+GRIV++G V + GT V+
Sbjct: 67 VDTVITNALILDHWG---IVKAD-IGIKDGRIVAIGKAGNPDIQDGVDIIIGPGTEVIAG 122
Query: 97 QGKVVVPGFIDSHVHFI 113
+G +V G ID+H+HFI
Sbjct: 123 EGLIVTAGGIDTHIHFI 139
|
Length = 568 |
| >gnl|CDD|223875 COG0804, UreC, Urea amidohydrolase (urease) alpha subunit [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 49.3 bits (118), Expect = 4e-06
Identities = 28/84 (33%), Positives = 43/84 (51%), Gaps = 12/84 (14%)
Query: 38 TTTTNLEADLVVTNGVI--FTGDDSLLFADSMAIKNGRIVSVGN------YSAVQQLAAD 89
T DLV+TN +I + G ++ AD + IK+GRI +G V +
Sbjct: 60 RLTRAGALDLVITNALIIDYWG---IVKAD-IGIKDGRIAGIGKAGNPDIMDGVTIIIGP 115
Query: 90 GTNVLNLQGKVVVPGFIDSHVHFI 113
T ++ +GK+V G ID+H+HFI
Sbjct: 116 STEIIAGEGKIVTAGGIDTHIHFI 139
|
Length = 568 |
| >gnl|CDD|223122 COG0044, PyrC, Dihydroorotase and related cyclic amidohydrolases [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Score = 48.9 bits (117), Expect = 5e-06
Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 7/73 (9%)
Query: 45 ADLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPG 104
DL++ N + AD + IK+G+I ++G G +++ +G +V+PG
Sbjct: 1 MDLLIKNARVVDPG-EDEVAD-ILIKDGKIAAIGKNLEPT----SGAEIIDAKGLLVLPG 54
Query: 105 FIDSHVHF-IPGG 116
+D HVHF PG
Sbjct: 55 LVDLHVHFREPGF 67
|
Length = 430 |
| >gnl|CDD|180363 PRK06038, PRK06038, N-ethylammeline chlorohydrolase; Provisional | Back alignment and domain information |
|---|
Score = 48.2 bits (115), Expect = 7e-06
Identities = 20/67 (29%), Positives = 35/67 (52%), Gaps = 5/67 (7%)
Query: 45 ADLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPG 104
AD+++ N + T D L S+ I++G I V + D V++ +G VV+PG
Sbjct: 2 ADIIIKNAYVLTMDAGDLKKGSVVIEDGTITEVSESTP-----GDADTVIDAKGSVVMPG 56
Query: 105 FIDSHVH 111
+++H H
Sbjct: 57 LVNTHTH 63
|
Length = 430 |
| >gnl|CDD|236419 PRK09228, PRK09228, guanine deaminase; Provisional | Back alignment and domain information |
|---|
Score = 48.3 bits (116), Expect = 8e-06
Identities = 28/85 (32%), Positives = 39/85 (45%), Gaps = 18/85 (21%)
Query: 512 ERISLTDALIAHTLSAARACFLENDVGSLSPGKIADFVIL--------------STSSWE 557
R+S A TL ARA L++ +G+L+PGK ADFV+L + S E
Sbjct: 346 YRLSPFQAFYLATLGGARALGLDDRIGNLAPGKEADFVVLDPAATPLLALRTARAESLEE 405
Query: 558 D-FAAEV---SASIEATYVSGVQAY 578
FA ++ TYV+G Y
Sbjct: 406 LLFALMTLGDDRAVAETYVAGRPVY 430
|
Length = 433 |
| >gnl|CDD|235732 PRK06189, PRK06189, allantoinase; Provisional | Back alignment and domain information |
|---|
Score = 47.8 bits (114), Expect = 1e-05
Identities = 21/67 (31%), Positives = 36/67 (53%), Gaps = 7/67 (10%)
Query: 46 DLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGF 105
DL++ G + T + + AD + IKNG+I + ++++ +++ G V PG
Sbjct: 4 DLIIRGGKVVT-PEGVYRAD-IGIKNGKIAEIA-----PEISSPAREIIDADGLYVFPGM 56
Query: 106 IDSHVHF 112
ID HVHF
Sbjct: 57 IDVHVHF 63
|
Length = 451 |
| >gnl|CDD|233321 TIGR01224, hutI, imidazolonepropionase | Back alignment and domain information |
|---|
Score = 47.4 bits (113), Expect = 1e-05
Identities = 19/68 (27%), Positives = 36/68 (52%), Gaps = 4/68 (5%)
Query: 66 SMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHFIPGG--LQMARVK 123
+ I G+IV +G +A+ + T +++ G +V PG +D H H + G + +K
Sbjct: 5 VILIHGGKIVWIGQLAALP--GEEATEIIDCGGGLVTPGLVDPHTHLVFAGDRVNEFEMK 62
Query: 124 LRGVSHKD 131
L+G S+ +
Sbjct: 63 LQGASYLE 70
|
This enzyme catalyzes the third step in histidine degradation [Energy metabolism, Amino acids and amines]. Length = 377 |
| >gnl|CDD|238434 cd00854, NagA, N-acetylglucosamine-6-phosphate deacetylase, NagA, catalyzes the hydrolysis of the N-acetyl group of N-acetyl-glucosamine-6-phosphate (GlcNAc-6-P) to glucosamine 6-phosphate and acetate | Back alignment and domain information |
|---|
Score = 46.8 bits (112), Expect = 2e-05
Identities = 19/61 (31%), Positives = 34/61 (55%), Gaps = 10/61 (16%)
Query: 514 ISLTDALIAHTLSAARACFLENDVGSLSPGKIADFVILSTSSWEDFAAEVSASIEATYVS 573
L +A+ +L+ A+ L++ GSL PGK AD V+L +D +++AT+++
Sbjct: 324 CPLEEAVRMASLNPAKLLGLDDRKGSLKPGKDADLVVLD----DDL------NVKATWIN 373
Query: 574 G 574
G
Sbjct: 374 G 374
|
This is the first committed step in the biosynthetic pathway to amino-sugar-nucleotides, which is needed for cell wall peptidoglycan and teichoic acid biosynthesis. Deacetylation of N-acetylglucosamine is also important in lipopolysaccharide synthesis and cell wall recycling. Length = 374 |
| >gnl|CDD|130852 TIGR01792, urease_alph, urease, alpha subunit | Back alignment and domain information |
|---|
Score = 47.1 bits (112), Expect = 2e-05
Identities = 27/75 (36%), Positives = 41/75 (54%), Gaps = 8/75 (10%)
Query: 45 ADLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGN------YSAVQQLAADGTNVLNLQG 98
DLV+TN +I D + ++ + IKNGRIV +G V + T ++ +G
Sbjct: 66 LDLVITNALIL--DWTGIYKADIGIKNGRIVGIGKAGNPDTMDGVDMIVGASTEAISGEG 123
Query: 99 KVVVPGFIDSHVHFI 113
K+V G ID+HVH+I
Sbjct: 124 KIVTAGGIDTHVHYI 138
|
This model describes the urease alpha subunit UreC (designated beta or B chain, UreB in Helicobacter species). Accessory proteins for incorporation of the nickel cofactor are usually found in addition to the urease alpha, beta, and gamma subunits. The trusted cutoff is set above the scores of many reported fragments and of a putative second urease alpha chain in Streptomyces coelicolor [Central intermediary metabolism, Nitrogen metabolism]. Length = 567 |
| >gnl|CDD|236479 PRK09357, pyrC, dihydroorotase; Validated | Back alignment and domain information |
|---|
Score = 47.1 bits (113), Expect = 2e-05
Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 6/49 (12%)
Query: 69 IKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHF-IPGG 116
I +G+I ++G + + A+G V++ G VV PG +D HVH PG
Sbjct: 24 IDDGKIAAIG-----ENIEAEGAEVIDATGLVVAPGLVDLHVHLREPGQ 67
|
Length = 423 |
| >gnl|CDD|238221 cd00375, Urease_alpha, Urease alpha-subunit; Urease is a nickel-dependent metalloenzyme that catalyzes the hydrolysis of urea to form ammonia and carbon dioxide | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 2e-05
Identities = 28/78 (35%), Positives = 42/78 (53%), Gaps = 14/78 (17%)
Query: 46 DLVVTNGVI--FTGDDSLLFADSMAIKNGRIVSVGNYS--------AVQQLAADGTNVLN 95
DLV+TN +I +TG ++ + IK+GRIV++G + T V+
Sbjct: 66 DLVITNALIIDYTG----IYKADIGIKDGRIVAIGKAGNPDIMDGVTPNMIVGPSTEVIA 121
Query: 96 LQGKVVVPGFIDSHVHFI 113
+GK+V G ID+HVHFI
Sbjct: 122 GEGKIVTAGGIDTHVHFI 139
|
Nickel-dependent ureases are found in bacteria, fungi and plants. Their primary role is to allow the use of external and internally generated urea as a nitrogen source. The enzyme consists of 3 subunits, alpha, beta and gamma, which can be fused and present on a single protein chain and which in turn forms multimers, mainly trimers. The large alpha subunit is the catalytic domain containing an active site with a bi-nickel center complexed by a carbamylated lysine. The beta and gamma subunits play a role in subunit association to form the higher order trimers. Length = 567 |
| >gnl|CDD|226473 COG3964, COG3964, Predicted amidohydrolase [General function prediction only] | Back alignment and domain information |
|---|
Score = 46.3 bits (110), Expect = 3e-05
Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 11/77 (14%)
Query: 43 LEADLVVTNGVIF---TGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGK 99
++ D+++T G + G D + ++AI NG+I + +Y A + T +++ G
Sbjct: 2 MQFDILLTGGRLIDPARGIDEI---TNIAIINGKIAAADDYPAPAE-----TQIIDADGC 53
Query: 100 VVVPGFIDSHVHFIPGG 116
+V PG ID HVH GG
Sbjct: 54 IVSPGLIDLHVHVYYGG 70
|
Length = 386 |
| >gnl|CDD|181632 PRK09060, PRK09060, dihydroorotase; Validated | Back alignment and domain information |
|---|
Score = 46.1 bits (110), Expect = 3e-05
Identities = 24/67 (35%), Positives = 37/67 (55%), Gaps = 7/67 (10%)
Query: 46 DLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGF 105
DL++ G + D AD + I++GRI ++G+ S A V++ +G V+PG
Sbjct: 6 DLILKGGTVVN-PDGEGRAD-IGIRDGRIAAIGDLSG-----ASAGEVIDCRGLHVLPGV 58
Query: 106 IDSHVHF 112
IDS VHF
Sbjct: 59 IDSQVHF 65
|
Length = 444 |
| >gnl|CDD|224733 COG1820, NagA, N-acetylglucosamine-6-phosphate deacetylase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 45.7 bits (109), Expect = 4e-05
Identities = 22/64 (34%), Positives = 37/64 (57%), Gaps = 6/64 (9%)
Query: 48 VVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFID 107
+ NG IFTG +L ++ I++G+I +V V +++L+G ++VPGFID
Sbjct: 3 ALKNGRIFTGHG-VLDGGAVVIEDGKIEAV-----VPAELPADAEIIDLKGALLVPGFID 56
Query: 108 SHVH 111
H+H
Sbjct: 57 LHIH 60
|
Length = 380 |
| >gnl|CDD|131030 TIGR01975, isoAsp_dipep, isoaspartyl dipeptidase IadA | Back alignment and domain information |
|---|
Score = 45.5 bits (108), Expect = 4e-05
Identities = 18/50 (36%), Positives = 28/50 (56%)
Query: 67 MAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHFIPGG 116
+ I N +I+++ + + V+ L+G + VPGFID HVH I GG
Sbjct: 20 ILIANDKIIAIADEIPSTKDFVPNCVVVGLEGMIAVPGFIDQHVHIIGGG 69
|
The L-isoaspartyl derivative of Asp arises non-enzymatically over time as a form of protein damage. In this isomerization, the connectivity of the polypeptide changes to pass through the beta-carboxyl of the side chain. Much but not all of this damage can be repaired by protein-L-isoaspartate (D-aspartate) O-methyltransferase. This model describes the isoaspartyl dipeptidase IadA, apparently one of two such enzymes in E. coli, an enzyme that degrades isoaspartyl dipeptides and may unblock degradation of proteins that cannot be repaired. This model also describes closely related proteins from other species (e.g. Clostridium perfringens, Thermoanaerobacter tengcongensis) that we assume to be equivalent in function. This family shows homology to dihydroorotases [Protein fate, Degradation of proteins, peptides, and glycopeptides]. Length = 389 |
| >gnl|CDD|238628 cd01303, GDEase, Guanine deaminase (GDEase) | Back alignment and domain information |
|---|
Score = 45.7 bits (109), Expect = 5e-05
Identities = 13/46 (28%), Positives = 28/46 (60%)
Query: 67 MAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHF 112
+ + +G I++ G +++ A G V++ + ++PGFID+H+H
Sbjct: 29 IVVVDGNIIAAGAAETLKRAAKPGARVIDSPNQFILPGFIDTHIHA 74
|
Guanine deaminase is an aminohydrolase responsible for the conversion of guanine to xanthine and ammonia, the first step to utilize guanine as a nitrogen source. This reaction also removes the guanine base from the pool and therefore can play a role in the regulation of cellular GTP and the guanylate nucleotide pool. Length = 429 |
| >gnl|CDD|235963 PRK07203, PRK07203, putative chlorohydrolase/aminohydrolase; Validated | Back alignment and domain information |
|---|
Score = 45.3 bits (108), Expect = 5e-05
Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Query: 47 LVVTNGVIFTGDDSLLFADSM--AIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPG 104
L++ NG T D + + AI+ IV +G ++ D ++ +GK+++PG
Sbjct: 2 LLIGNGTAITRDPAKPVIEDGAIAIEGNVIVEIGTTDELKAKYPDAE-FIDAKGKLIMPG 60
Query: 105 FIDSHVHF 112
I+SH H
Sbjct: 61 LINSHNHI 68
|
Length = 442 |
| >gnl|CDD|238633 cd01308, Isoaspartyl-dipeptidase, Isoaspartyl dipeptidase hydrolyzes the beta-L-isoaspartyl linkages in dipeptides, as part of the degradative pathway to eliminate proteins with beta-L-isoaspartyl peptide bonds, bonds whereby the beta-group of an aspartate forms the peptide link with the amino group of the following amino acid | Back alignment and domain information |
|---|
Score = 45.5 bits (108), Expect = 6e-05
Identities = 19/50 (38%), Positives = 30/50 (60%), Gaps = 2/50 (4%)
Query: 67 MAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHFIPGG 116
+ I G+I+++ + + V++L GK++VPGFID HVH I GG
Sbjct: 20 ILIAGGKILAI--EDQLNLPGYENVTVVDLHGKILVPGFIDQHVHIIGGG 67
|
Formation of this bond is a spontaneous nonenzymatic reaction in nature and can profoundly effect the function of the protein. Isoaspartyl dipeptidase is an octameric enzyme that contains a binuclear zinc center in the active site of each subunit and shows a strong preference of hydrolyzing Asp-Leu dipeptides. Length = 387 |
| >gnl|CDD|236478 PRK09356, PRK09356, imidazolonepropionase; Validated | Back alignment and domain information |
|---|
Score = 45.2 bits (108), Expect = 7e-05
Identities = 19/48 (39%), Positives = 27/48 (56%)
Query: 513 RISLTDALIAHTLSAARACFLENDVGSLSPGKIADFVILSTSSWEDFA 560
R++ +AL A T++AARA ++ GSL GK AD VI S +
Sbjct: 339 RLTPEEALAAVTINAARALGRQDTHGSLEVGKKADLVIWDAPSPAELP 386
|
Length = 406 |
| >gnl|CDD|238434 cd00854, NagA, N-acetylglucosamine-6-phosphate deacetylase, NagA, catalyzes the hydrolysis of the N-acetyl group of N-acetyl-glucosamine-6-phosphate (GlcNAc-6-P) to glucosamine 6-phosphate and acetate | Back alignment and domain information |
|---|
Score = 44.9 bits (107), Expect = 8e-05
Identities = 19/65 (29%), Positives = 38/65 (58%), Gaps = 6/65 (9%)
Query: 47 LVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFI 106
L++ N I T L ++ +++G+IV++G + + +++L+G+ +VPGFI
Sbjct: 1 LIIKNARILTPG--GLEDGAVLVEDGKIVAIGP----EDELEEADEIIDLKGQYLVPGFI 54
Query: 107 DSHVH 111
D H+H
Sbjct: 55 DIHIH 59
|
This is the first committed step in the biosynthetic pathway to amino-sugar-nucleotides, which is needed for cell wall peptidoglycan and teichoic acid biosynthesis. Deacetylation of N-acetylglucosamine is also important in lipopolysaccharide synthesis and cell wall recycling. Length = 374 |
| >gnl|CDD|181288 PRK08204, PRK08204, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 45.0 bits (107), Expect = 8e-05
Identities = 32/101 (31%), Positives = 47/101 (46%), Gaps = 14/101 (13%)
Query: 466 FQSLLANNALLALGSDW-PVADINPLCAIRTA--MKRIPPGWDNA------WIPSERISL 516
LLA+ +LG D + +R A +R DNA +P R++L
Sbjct: 286 TGRLLAHGVRPSLGVDVVTSTGGDMFTQMRFALQAER---ARDNAVHLREGGMPPPRLTL 342
Query: 517 T--DALIAHTLSAARACFLENDVGSLSPGKIADFVILSTSS 555
T L T+ ARA LE+ +GSL+PGK AD V++ +
Sbjct: 343 TARQVLEWATIEGARALGLEDRIGSLTPGKQADLVLIDATD 383
|
Length = 449 |
| >gnl|CDD|169193 PRK08044, PRK08044, allantoinase; Provisional | Back alignment and domain information |
|---|
Score = 43.7 bits (103), Expect = 2e-04
Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 9/75 (12%)
Query: 43 LEADLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVV 102
+ DL++ NG + +++ +A+K G+I ++G Q D V++ G VV
Sbjct: 1 MSFDLIIKNGTVILENEA--RVVDIAVKGGKIAAIG------QDLGDAKEVMDASGLVVS 52
Query: 103 PGFIDSHVHFI-PGG 116
PG +D+H H PG
Sbjct: 53 PGMVDAHTHISEPGR 67
|
Length = 449 |
| >gnl|CDD|180337 PRK05985, PRK05985, cytosine deaminase; Provisional | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 2e-04
Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 9/67 (13%)
Query: 46 DLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGF 105
DL+ N G A + I++GRI ++G A A G V + G + +PG
Sbjct: 3 DLLFRNVRPAGGA-----AVDILIRDGRIAAIGPALA----APPGAEVEDGGGALALPGL 53
Query: 106 IDSHVHF 112
+D H+H
Sbjct: 54 VDGHIHL 60
|
Length = 391 |
| >gnl|CDD|179417 PRK02382, PRK02382, dihydroorotase; Provisional | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 3e-04
Identities = 18/67 (26%), Positives = 34/67 (50%), Gaps = 6/67 (8%)
Query: 46 DLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGF 105
D ++ +G ++ + L + I G+I +VG + V++ +G +++PG
Sbjct: 3 DALLKDGRVYYNNS--LQPRDVRIDGGKITAVGKDLD----GSSSEEVIDARGMLLLPGG 56
Query: 106 IDSHVHF 112
ID HVHF
Sbjct: 57 IDVHVHF 63
|
Length = 443 |
| >gnl|CDD|180895 PRK07228, PRK07228, N-ethylammeline chlorohydrolase; Provisional | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 3e-04
Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 14/76 (18%)
Query: 38 TTTTNLEADLVVTNG--VIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLN 95
T A +V N I GD + I++ RI +VG+ ++ D + ++
Sbjct: 1 MTILIKNAGIVTMNAKREIVDGD--------VLIEDDRIAAVGDRLDLE----DYDDHID 48
Query: 96 LQGKVVVPGFIDSHVH 111
GKVV+PG I H+H
Sbjct: 49 ATGKVVIPGLIQGHIH 64
|
Length = 445 |
| >gnl|CDD|233321 TIGR01224, hutI, imidazolonepropionase | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 4e-04
Identities = 28/109 (25%), Positives = 51/109 (46%), Gaps = 10/109 (9%)
Query: 467 QSLLANNALLALGSDWPVADINPLCAIRTAMKRIPPGWDNAWIPSERISLTDALIAHTLS 526
+ L+ +AL +D +NP + +M+ I + +++ +AL A T++
Sbjct: 276 RQLIDYGVPVALATD-----LNPGSSPTLSMQLIM----SLACRLMKMTPEEALHAATVN 326
Query: 527 AARACFLENDVGSLSPGKIADFVILSTSSWEDFAAEVSAS-IEATYVSG 574
AA A L + G+L G+ AD VILS S+ + + + A +G
Sbjct: 327 AAYALGLGEERGTLEAGRDADLVILSAPSYAEIPYHYGVNHVHAVIKNG 375
|
This enzyme catalyzes the third step in histidine degradation [Energy metabolism, Amino acids and amines]. Length = 377 |
| >gnl|CDD|184438 PRK13985, ureB, urease subunit beta; Provisional | Back alignment and domain information |
|---|
Score = 43.0 bits (101), Expect = 4e-04
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 14/80 (17%)
Query: 44 EADLVVTNGVI--FTGDDSLLFADSMAIKNGRIVSVGNYS--------AVQQLAADGTNV 93
E DL++TN +I +TG ++ + IK+G+I +G T
Sbjct: 64 ELDLIITNALIIDYTG----IYKADIGIKDGKIAGIGKGGNKDMQDGVKNNLSVGPATEA 119
Query: 94 LNLQGKVVVPGFIDSHVHFI 113
L +G +V G ID+H+HFI
Sbjct: 120 LAGEGLIVTAGGIDTHIHFI 139
|
Length = 568 |
| >gnl|CDD|233694 TIGR02033, D-hydantoinase, D-hydantoinase | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 4e-04
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 6/66 (9%)
Query: 47 LVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFI 106
++ G + DD F + I+ G+IV+VG+ D V++ GK V+PG I
Sbjct: 1 KLIRGGTVVNADDV--FQADVLIEGGKIVAVGSNLQPP----DAVEVIDATGKYVLPGGI 54
Query: 107 DSHVHF 112
D H H
Sbjct: 55 DVHTHL 60
|
This model represents the D-hydantoinase (dihydropyrimidinase) which primarily converts 5,6-dihydrouracil to 3-ureidopropanoate but also acts on dihydrothymine and hydantoin. The enzyme is a metalloenzyme. Length = 454 |
| >gnl|CDD|238618 cd01293, Bact_CD, Bacterial cytosine deaminase and related metal-dependent hydrolases | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 4e-04
Identities = 16/63 (25%), Positives = 33/63 (52%), Gaps = 7/63 (11%)
Query: 49 VTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDS 108
+ N + G +L+ +AI++GRI ++G ++ +G++V+P F+D
Sbjct: 2 LRNARLADGGTALV---DIAIEDGRIAAIG----PALAVPPDAEEVDAKGRLVLPAFVDP 54
Query: 109 HVH 111
H+H
Sbjct: 55 HIH 57
|
Cytosine deaminases (CDs) catalyze the deamination of cytosine, producing uracil and ammonia. They play an important role in pyrimidine salvage. CDs are present in prokaryotes and fungi, but not mammalian cells. The bacterial enzymes, but not the fungal enzymes, are related to the adenosine deaminases (ADA). The bacterial enzymes are iron dependent and hexameric. Length = 398 |
| >gnl|CDD|236369 PRK09061, PRK09061, D-glutamate deacylase; Validated | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 5e-04
Identities = 27/69 (39%), Positives = 37/69 (53%), Gaps = 12/69 (17%)
Query: 46 DLVVTNGVIF---TGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVV 102
DLV+ NG + TG D++ D + IK G+I +VG A +G ++ G VV
Sbjct: 20 DLVIRNGRVVDPETGLDAV--RD-VGIKGGKIAAVGTA------AIEGDRTIDATGLVVA 70
Query: 103 PGFIDSHVH 111
PGFID H H
Sbjct: 71 PGFIDLHAH 79
|
Length = 509 |
| >gnl|CDD|238620 cd01295, AdeC, Adenine deaminase (AdeC) directly deaminates adenine to form hypoxanthine | Back alignment and domain information |
|---|
Score = 42.2 bits (100), Expect = 5e-04
Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 9/62 (14%)
Query: 514 ISLTDALIAHTLSAARACFLENDVGSLSPGKIADFVILSTSSWEDFAAEVSASIEATYVS 573
I DA+ T++ A C+ +D+G+++PG+IAD VIL E+F +I
Sbjct: 235 IPPEDAIQMATINPAE-CYGLHDLGAIAPGRIADIVIL--DDLENF------NITTVLAK 285
Query: 574 GV 575
G+
Sbjct: 286 GI 287
|
This reaction is part of one of the adenine salvage pathways, as well as the degradation pathway. It is important for adenine utilization as a purine, as well as a nitrogen source in bacteria and archea. Length = 422 |
| >gnl|CDD|183965 PRK13308, ureC, urease subunit alpha; Reviewed | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 5e-04
Identities = 25/82 (30%), Positives = 36/82 (43%), Gaps = 13/82 (15%)
Query: 46 DLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADG----------TNVLN 95
D V+ N + ++ D + I++GRIV +G A DG T+V
Sbjct: 69 DFVLCNVTVIDPVLGIVKGD-IGIRDGRIVGIG--KAGNPDIMDGVDPRLVVGPGTDVRP 125
Query: 96 LQGKVVVPGFIDSHVHFIPGGL 117
+G + PG ID HVHF L
Sbjct: 126 AEGLIATPGAIDVHVHFDSAQL 147
|
Length = 569 |
| >gnl|CDD|236184 PRK08203, PRK08203, hydroxydechloroatrazine ethylaminohydrolase; Reviewed | Back alignment and domain information |
|---|
Score = 42.1 bits (100), Expect = 6e-04
Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 5/68 (7%)
Query: 47 LVVTNGVIFTGDDS-LLFAD-SMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPG 104
+ I T D + AD + ++ GRIV VG L V + +G VV PG
Sbjct: 4 WIKNPLAIVTMDAARREIADGGLVVEGGRIVEVG---PGGALPQPADEVFDARGHVVTPG 60
Query: 105 FIDSHVHF 112
+++H HF
Sbjct: 61 LVNTHHHF 68
|
Length = 451 |
| >gnl|CDD|181039 PRK07572, PRK07572, cytosine deaminase; Validated | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 6e-04
Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 9/66 (13%)
Query: 46 DLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGF 105
DL+V N + G + + I GRI +V L A+ ++ G++V P F
Sbjct: 3 DLIVRNANLPDGRTGI----DIGIAGGRIAAVE-----PGLQAEAAEEIDAAGRLVSPPF 53
Query: 106 IDSHVH 111
+D H H
Sbjct: 54 VDPHFH 59
|
Length = 426 |
| >gnl|CDD|233153 TIGR00857, pyrC_multi, dihydroorotase, multifunctional complex type | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 7e-04
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 5/48 (10%)
Query: 65 DSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHF 112
+ ++ GRI +G V++ +G +V+PGFID HVH
Sbjct: 6 VDILVEGGRIKKIGKLRIP-----PDAEVIDAKGLLVLPGFIDLHVHL 48
|
In contrast to the homodimeric type of dihydroorotase found in E. coli, this class tends to appear in a large, multifunctional complex with aspartate transcarbamoylase. Homologous domains appear in multifunctional proteins of higher eukaryotes. In some species, including Pseudomonas putida and P. aeruginosa, this protein is inactive but is required as a non-catalytic subunit of aspartate transcarbamoylase (ATCase). In these species, a second, active dihydroorotase is also present. The seed for this model does not include any example of the dihydroorotase domain of eukaryotic multidomain pyrimidine synthesis proteins. All proteins described by This model should represent active and inactive dihydroorotase per se and functionally equivalent domains of multifunctional proteins from higher eukaryotes, but exclude related proteins such as allantoinase [Purines, pyrimidines, nucleosides, and nucleotides, Pyrimidine ribonucleotide biosynthesis]. Length = 411 |
| >gnl|CDD|181631 PRK09059, PRK09059, dihydroorotase; Validated | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 7e-04
Identities = 19/50 (38%), Positives = 29/50 (58%), Gaps = 4/50 (8%)
Query: 69 IKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHFI--PGG 116
I++G IV+ G A Q A +G +++ GK V PG +D+ V F+ PG
Sbjct: 27 IEDGVIVAAGK-GAGNQGAPEGAEIVDCAGKAVAPGLVDARV-FVGEPGA 74
|
Length = 429 |
| >gnl|CDD|236366 PRK09045, PRK09045, N-ethylammeline chlorohydrolase; Provisional | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 8e-04
Identities = 21/46 (45%), Positives = 27/46 (58%), Gaps = 6/46 (13%)
Query: 518 DALIAH------TLSAARACFLENDVGSLSPGKIADFVILSTSSWE 557
AL AH TL+ ARA L++++GSL PGK AD V + S E
Sbjct: 338 TALPAHTALRMATLNGARALGLDDEIGSLEPGKQADLVAVDLSGLE 383
|
Length = 443 |
| >gnl|CDD|132622 TIGR03583, EF_0837, probable amidohydrolase EF_0837/AHA_3915 | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 8e-04
Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 11/70 (15%)
Query: 46 DLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVV-PG 104
DL++ NG T + + + +AI++G+I +VG ++L+G+ V G
Sbjct: 2 DLLIKNGR--TVNGTPV---DIAIEDGKIAAVGTTITGS-----AKQTIDLEGETYVSAG 51
Query: 105 FIDSHVHFIP 114
+ID H H P
Sbjct: 52 WIDDHTHCFP 61
|
Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. These proteins resemble aminohydrolases (see pfam01979), including dihydroorotases. The function is unknown [Hypothetical proteins, Conserved]. Length = 365 |
| >gnl|CDD|224733 COG1820, NagA, N-acetylglucosamine-6-phosphate deacetylase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 0.001
Identities = 21/65 (32%), Positives = 39/65 (60%), Gaps = 10/65 (15%)
Query: 514 ISLTDALIAHTLSAARACFLENDVGSLSPGKIADFVILSTSSWEDFAAEVSASIEATYVS 573
ISL +A+ +L+ A+A L++ +GS+ PGK AD V+L +D ++AT+++
Sbjct: 325 ISLAEAVRMASLNPAKALGLDDRLGSIKPGKDADLVVLD----DDLN------VKATWIN 374
Query: 574 GVQAY 578
G + +
Sbjct: 375 GEKVF 379
|
Length = 380 |
| >gnl|CDD|238632 cd01307, Met_dep_hydrolase_B, Metallo-dependent hydrolases, subgroup B is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 0.001
Identities = 21/49 (42%), Positives = 28/49 (57%), Gaps = 4/49 (8%)
Query: 68 AIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHFIPGG 116
AI+NG+I +VG A A T +++ G V PG+ID HVH GG
Sbjct: 3 AIENGKIAAVGAALA----APAATQIVDAGGCYVSPGWIDLHVHVYQGG 47
|
The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown. Length = 338 |
| >gnl|CDD|181411 PRK08393, PRK08393, N-ethylammeline chlorohydrolase; Provisional | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 0.001
Identities = 17/65 (26%), Positives = 33/65 (50%), Gaps = 5/65 (7%)
Query: 47 LVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFI 106
+++ NG + G++ + + I+ +IV V + + V++ G VV PGFI
Sbjct: 3 ILIKNGYVIYGENLKVIRADVLIEGNKIVEVK-----RNINKPADTVIDASGSVVSPGFI 57
Query: 107 DSHVH 111
++H H
Sbjct: 58 NAHTH 62
|
Length = 424 |
| >gnl|CDD|238624 cd01299, Met_dep_hydrolase_A, Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 0.001
Identities = 42/188 (22%), Positives = 66/188 (35%), Gaps = 44/188 (23%)
Query: 379 GLQVAIHAIGDRANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLASGTAARFGDQGIVASM 438
GL VA HA G A + ++ V T IEH + T ++GI
Sbjct: 173 GLYVAAHAYGAEA---IRRAIRAGVDT---------IEHGFLIDDETIELMKEKGIFLVP 220
Query: 439 QPQHLLD-DADSARKKLGVDRAERESYLFQSLLANNALL-------ALGSDWPVADINPL 490
A+ A L D AE+ + + ++ A G+D
Sbjct: 221 TLATYEALAAEGAAPGLPADSAEKVALVLEAGRDALRRAHKAGVKIAFGTD--------- 271
Query: 491 CAIRTAMKRIPPGWDNAWIPSE-----RISLT--DALIAHTLSAARACFLENDVGSLSPG 543
P GW E + T +AL A T +AA L +++G + G
Sbjct: 272 ----AGFPVPPHGW----NARELELLVKAGGTPAEALRAATANAAELLGLSDELGVIEAG 323
Query: 544 KIADFVIL 551
K+AD +++
Sbjct: 324 KLADLLVV 331
|
The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown. Length = 342 |
| >gnl|CDD|183010 PRK11170, nagA, N-acetylglucosamine-6-phosphate deacetylase; Provisional | Back alignment and domain information |
|---|
Score = 40.3 bits (95), Expect = 0.002
Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 5/58 (8%)
Query: 50 TNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFID 107
TNG I+TG + +L ++ I +G I +V V +L G +L G ++ PGFID
Sbjct: 5 TNGRIYTGHE-VLDDHAVVIADGLIEAV---CPVAELPP-GIEQRDLNGAILSPGFID 57
|
Length = 382 |
| >gnl|CDD|235265 PRK04250, PRK04250, dihydroorotase; Provisional | Back alignment and domain information |
|---|
Score = 40.1 bits (94), Expect = 0.002
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 6/47 (12%)
Query: 66 SMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHF 112
+ I+NGRI + G V+ ++G +++PG ID HVH
Sbjct: 16 GIGIENGRISKISLRDL------KGKEVIKVKGGIILPGLIDVHVHL 56
|
Length = 398 |
| >gnl|CDD|132012 TIGR02967, guan_deamin, guanine deaminase | Back alignment and domain information |
|---|
Score = 39.9 bits (94), Expect = 0.003
Identities = 25/81 (30%), Positives = 36/81 (44%), Gaps = 18/81 (22%)
Query: 512 ERISLTDALIAHTLSAARACFLENDVGSLSPGKIADFVIL-------------STSSWED 558
R+S +A TL ARA L++ +G+ PGK ADFV+L + ED
Sbjct: 321 ARLSPFEAFYLATLGGARALDLDDRIGNFEPGKEADFVVLDPAATPLLALRFEGADTLED 380
Query: 559 --FAAEV---SASIEATYVSG 574
F ++ TYV+G
Sbjct: 381 KLFKLMYLGDDRNVAETYVAG 401
|
This model describes guanine deaminase, which hydrolyzes guanine to xanthine and ammonia. Xanthine can then be converted to urate by xanthine dehydrogenase, and urate subsequently degraded. In some bacteria, the guanine deaminase gene is found near the xdhABC genes for xanthine dehydrogenase. Non-homologous forms of guanine deaminase also exist, as well as distantly related forms outside the scope of this model [Purines, pyrimidines, nucleosides, and nucleotides, Other]. Length = 401 |
| >gnl|CDD|181288 PRK08204, PRK08204, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 40.0 bits (94), Expect = 0.003
Identities = 16/66 (24%), Positives = 32/66 (48%), Gaps = 7/66 (10%)
Query: 48 VVTNGVIFTGDDSLLFADS--MAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGF 105
++ G + T D ++ + I+ RI +V + A V++ +G +V+PG
Sbjct: 5 LIRGGTVLTMDPAIGDLPRGDILIEGDRIAAVA-----PSIEAPDAEVVDARGMIVMPGL 59
Query: 106 IDSHVH 111
+D+H H
Sbjct: 60 VDTHRH 65
|
Length = 449 |
| >gnl|CDD|215172 PLN02303, PLN02303, urease | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 0.003
Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 10/76 (13%)
Query: 46 DLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVG---NYSAVQQLAAD-----GTNVLNLQ 97
D V+TN VI D + ++ + IK+G IV +G N + + ++ T V+ +
Sbjct: 335 DTVITNAVII--DYTGIYKADIGIKDGLIVGIGKAGNPDVMDGVTSNMIVGVNTEVIAGE 392
Query: 98 GKVVVPGFIDSHVHFI 113
G +V G ID HVHFI
Sbjct: 393 GMIVTAGGIDCHVHFI 408
|
Length = 837 |
| >gnl|CDD|181716 PRK09236, PRK09236, dihydroorotase; Reviewed | Back alignment and domain information |
|---|
Score = 39.9 bits (94), Expect = 0.003
Identities = 24/65 (36%), Positives = 36/65 (55%), Gaps = 12/65 (18%)
Query: 48 VVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFID 107
+V G IF GD +L I+NGRI + S++ +AD V++ G+ ++PG ID
Sbjct: 11 IVNEGKIFEGD--VL------IENGRIAKIA--SSISAKSAD--TVIDAAGRYLLPGMID 58
Query: 108 SHVHF 112
VHF
Sbjct: 59 DQVHF 63
|
Length = 444 |
| >gnl|CDD|132357 TIGR03314, Se_ssnA, putative selenium metabolism protein SsnA | Back alignment and domain information |
|---|
Score = 39.8 bits (93), Expect = 0.003
Identities = 20/71 (28%), Positives = 37/71 (52%), Gaps = 3/71 (4%)
Query: 47 LVVTNGVIFTGDDSLLFADS--MAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPG 104
L++ NG D + + +AI I +VG ++Q + T ++ +GK+++PG
Sbjct: 1 LLIGNGTAVQLDPTRPIQEGGDIAIDGDVIKAVGPTEELKQKYPEAT-FIDAKGKLIMPG 59
Query: 105 FIDSHVHFIPG 115
FI++H HF
Sbjct: 60 FINTHNHFYST 70
|
Members of this protein family are found exclusively in genomes that contain putative set of labile selenium-dependent enzyme accessory proteins as well as homologs of a labile selenium-dependent purine hydroxylase. A mutant in this gene in Escherichia coli had improved stationary phase viability. The function is unknown. Length = 441 |
| >gnl|CDD|182201 PRK10027, PRK10027, cryptic adenine deaminase; Provisional | Back alignment and domain information |
|---|
Score = 40.2 bits (94), Expect = 0.003
Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 4/67 (5%)
Query: 45 ADLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPG 104
AD ++ N I + + + IK I VG + A ++ +G VPG
Sbjct: 30 ADYIIDNVSILDLINGGEISGPIVIKGRYIAGVG--AEYADAPA--LQRIDARGATAVPG 85
Query: 105 FIDSHVH 111
FID+H+H
Sbjct: 86 FIDAHLH 92
|
Length = 588 |
| >gnl|CDD|178392 PLN02795, PLN02795, allantoinase | Back alignment and domain information |
|---|
Score = 39.8 bits (93), Expect = 0.004
Identities = 29/104 (27%), Positives = 41/104 (39%), Gaps = 15/104 (14%)
Query: 12 ALALSIFSFPLLNNFYLLKLTPATTTT---TTTNLEADLVVT-NGVIFTGDDSLLFADSM 67
AL ++ F L L + L + VVT GVI ++
Sbjct: 15 ALLATLVFFFLFAPA-LPLQGRDRCSLLPWPHFVLYSKRVVTPAGVI---------PGAV 64
Query: 68 AIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVH 111
++ GRIVSV + +VL+ VV+PG ID HVH
Sbjct: 65 EVEGGRIVSVTKEEEAP-KSQKKPHVLDYGNAVVMPGLIDVHVH 107
|
Length = 505 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 579 | |||
| COG1574 | 535 | Predicted metal-dependent hydrolase with the TIM-b | 100.0 | |
| cd01300 | 479 | YtcJ_like YtcJ_like metal dependent amidohydrolase | 100.0 | |
| PF07969 | 404 | Amidohydro_3: Amidohydrolase family; InterPro: IPR | 100.0 | |
| PRK06687 | 419 | chlorohydrolase; Validated | 100.0 | |
| PRK09045 | 443 | N-ethylammeline chlorohydrolase; Provisional | 100.0 | |
| PRK15493 | 435 | 5-methylthioadenosine/S-adenosylhomocysteine deami | 100.0 | |
| PRK07228 | 445 | N-ethylammeline chlorohydrolase; Provisional | 100.0 | |
| PRK08204 | 449 | hypothetical protein; Provisional | 100.0 | |
| cd01298 | 411 | ATZ_TRZ_like TRZ/ATZ family contains enzymes from | 100.0 | |
| PRK06380 | 418 | metal-dependent hydrolase; Provisional | 100.0 | |
| PRK06038 | 430 | N-ethylammeline chlorohydrolase; Provisional | 100.0 | |
| PRK08203 | 451 | hydroxydechloroatrazine ethylaminohydrolase; Revie | 100.0 | |
| PRK07203 | 442 | putative chlorohydrolase/aminohydrolase; Validated | 100.0 | |
| PRK06151 | 488 | N-ethylammeline chlorohydrolase; Provisional | 100.0 | |
| PRK12393 | 457 | amidohydrolase; Provisional | 100.0 | |
| PRK09228 | 433 | guanine deaminase; Provisional | 100.0 | |
| PRK09356 | 406 | imidazolonepropionase; Validated | 100.0 | |
| TIGR03314 | 441 | Se_ssnA putative selenium metabolism protein SsnA. | 100.0 | |
| PRK08393 | 424 | N-ethylammeline chlorohydrolase; Provisional | 100.0 | |
| cd01303 | 429 | GDEase Guanine deaminase (GDEase). Guanine deamina | 100.0 | |
| PRK08418 | 408 | chlorohydrolase; Provisional | 100.0 | |
| PRK07213 | 375 | chlorohydrolase; Provisional | 100.0 | |
| cd01293 | 398 | Bact_CD Bacterial cytosine deaminase and related m | 100.0 | |
| TIGR02967 | 401 | guan_deamin guanine deaminase. This model describe | 100.0 | |
| PRK09229 | 456 | N-formimino-L-glutamate deiminase; Validated | 100.0 | |
| COG1228 | 406 | HutI Imidazolonepropionase and related amidohydrol | 100.0 | |
| cd01313 | 418 | Met_dep_hydrolase_E Metallo-dependent hydrolases, | 100.0 | |
| PRK07572 | 426 | cytosine deaminase; Validated | 100.0 | |
| PRK09230 | 426 | cytosine deaminase; Provisional | 100.0 | |
| PRK05985 | 391 | cytosine deaminase; Provisional | 100.0 | |
| TIGR02022 | 455 | hutF formiminoglutamate deiminase. In some species | 100.0 | |
| TIGR01224 | 377 | hutI imidazolonepropionase. This enzyme catalyzes | 100.0 | |
| cd01312 | 381 | Met_dep_hydrolase_D Metallo-dependent hydrolases, | 100.0 | |
| PRK14085 | 382 | imidazolonepropionase; Provisional | 100.0 | |
| PLN02942 | 486 | dihydropyrimidinase | 100.0 | |
| PRK13309 | 572 | ureC urease subunit alpha; Reviewed | 100.0 | |
| PRK07583 | 438 | cytosine deaminase-like protein; Validated | 100.0 | |
| cd01296 | 371 | Imidazolone-5PH Imidazolonepropionase/imidazolone- | 99.98 | |
| COG0402 | 421 | SsnA Cytosine deaminase and related metal-dependen | 99.98 | |
| PRK07627 | 425 | dihydroorotase; Provisional | 99.98 | |
| TIGR02033 | 454 | D-hydantoinase D-hydantoinase. This model represen | 99.98 | |
| cd01314 | 447 | D-HYD D-hydantoinases (D-HYD) also called dihydrop | 99.98 | |
| PRK13206 | 573 | ureC urease subunit alpha; Reviewed | 99.97 | |
| PRK13207 | 568 | ureC urease subunit alpha; Reviewed | 99.97 | |
| PRK09357 | 423 | pyrC dihydroorotase; Validated | 99.97 | |
| KOG3968 | 439 | consensus Atrazine chlorohydrolase/guanine deamina | 99.97 | |
| PRK08323 | 459 | phenylhydantoinase; Validated | 99.97 | |
| cd01299 | 342 | Met_dep_hydrolase_A Metallo-dependent hydrolases, | 99.97 | |
| PRK06189 | 451 | allantoinase; Provisional | 99.97 | |
| PRK12394 | 379 | putative metallo-dependent hydrolase; Provisional | 99.97 | |
| PRK13985 | 568 | ureB urease subunit beta; Provisional | 99.97 | |
| PRK15446 | 383 | phosphonate metabolism protein PhnM; Provisional | 99.97 | |
| TIGR03178 | 443 | allantoinase allantoinase. This enzyme carries out | 99.97 | |
| TIGR01792 | 567 | urease_alph urease, alpha subunit. This model desc | 99.97 | |
| cd01315 | 447 | L-HYD_ALN L-Hydantoinases (L-HYDs) and Allantoinas | 99.97 | |
| PRK13404 | 477 | dihydropyrimidinase; Provisional | 99.97 | |
| cd01297 | 415 | D-aminoacylase D-aminoacylases (N-acyl-D-Amino aci | 99.97 | |
| COG0044 | 430 | PyrC Dihydroorotase and related cyclic amidohydrol | 99.97 | |
| PLN02795 | 505 | allantoinase | 99.97 | |
| cd00375 | 567 | Urease_alpha Urease alpha-subunit; Urease is a nic | 99.96 | |
| PRK13308 | 569 | ureC urease subunit alpha; Reviewed | 99.96 | |
| PRK09059 | 429 | dihydroorotase; Validated | 99.96 | |
| PRK09236 | 444 | dihydroorotase; Reviewed | 99.96 | |
| PRK06846 | 410 | putative deaminase; Validated | 99.96 | |
| TIGR02318 | 376 | phosphono_phnM phosphonate metabolism protein PhnM | 99.96 | |
| PLN02303 | 837 | urease | 99.96 | |
| PRK08044 | 449 | allantoinase; Provisional | 99.96 | |
| PRK07575 | 438 | dihydroorotase; Provisional | 99.96 | |
| PRK09060 | 444 | dihydroorotase; Validated | 99.96 | |
| TIGR01975 | 389 | isoAsp_dipep isoaspartyl dipeptidase IadA. The L-i | 99.96 | |
| PRK02382 | 443 | dihydroorotase; Provisional | 99.96 | |
| PRK07369 | 418 | dihydroorotase; Provisional | 99.95 | |
| cd01309 | 359 | Met_dep_hydrolase_C Metallo-dependent hydrolases, | 99.95 | |
| PRK08417 | 386 | dihydroorotase; Provisional | 99.95 | |
| PRK10657 | 388 | isoaspartyl dipeptidase; Provisional | 99.95 | |
| PRK09237 | 380 | dihydroorotase; Provisional | 99.95 | |
| PRK09061 | 509 | D-glutamate deacylase; Validated | 99.95 | |
| COG1001 | 584 | AdeC Adenine deaminase [Nucleotide transport and m | 99.94 | |
| TIGR01178 | 552 | ade adenine deaminase. The family described by thi | 99.94 | |
| TIGR00857 | 411 | pyrC_multi dihydroorotase, multifunctional complex | 99.94 | |
| PRK01211 | 409 | dihydroorotase; Provisional | 99.93 | |
| PRK10027 | 588 | cryptic adenine deaminase; Provisional | 99.93 | |
| cd01304 | 541 | FMDH_A Formylmethanofuran dehydrogenase (FMDH) sub | 99.92 | |
| PRK04250 | 398 | dihydroorotase; Provisional | 99.92 | |
| KOG2584 | 522 | consensus Dihydroorotase and related enzymes [Nucl | 99.92 | |
| TIGR03121 | 556 | one_C_dehyd_A formylmethanofuran dehydrogenase sub | 99.92 | |
| PRK00369 | 392 | pyrC dihydroorotase; Provisional | 99.92 | |
| COG1820 | 380 | NagA N-acetylglucosamine-6-phosphate deacetylase [ | 99.92 | |
| COG3964 | 386 | Predicted amidohydrolase [General function predict | 99.91 | |
| cd01308 | 387 | Isoaspartyl-dipeptidase Isoaspartyl dipeptidase hy | 99.91 | |
| cd00854 | 374 | NagA N-acetylglucosamine-6-phosphate deacetylase, | 99.9 | |
| PRK11170 | 382 | nagA N-acetylglucosamine-6-phosphate deacetylase; | 99.9 | |
| TIGR00221 | 380 | nagA N-acetylglucosamine-6-phosphate deacetylase. | 99.89 | |
| COG3454 | 377 | Metal-dependent hydrolase involved in phosphonate | 99.89 | |
| TIGR03583 | 365 | EF_0837 probable amidohydrolase EF_0837/AHA_3915. | 99.89 | |
| COG0804 | 568 | UreC Urea amidohydrolase (urease) alpha subunit [A | 99.88 | |
| cd01307 | 338 | Met_dep_hydrolase_B Metallo-dependent hydrolases, | 99.88 | |
| cd01295 | 422 | AdeC Adenine deaminase (AdeC) directly deaminates | 99.87 | |
| cd01318 | 361 | DHOase_IIb Dihydroorotase (DHOase), subgroup IIb; | 99.87 | |
| cd01317 | 374 | DHOase_IIa Dihydroorotase (DHOase), subgroup IIa; | 99.85 | |
| cd01302 | 337 | Cyclic_amidohydrolases Cyclic amidohydrolases, inc | 99.82 | |
| PF01979 | 333 | Amidohydro_1: Amidohydrolase family; InterPro: IPR | 99.81 | |
| cd01305 | 263 | archeal_chlorohydrolases Predicted chlorohydrolase | 99.8 | |
| PRK06886 | 329 | hypothetical protein; Validated | 99.78 | |
| cd01306 | 325 | PhnM PhnM is believed to be a subunit of the membr | 99.78 | |
| COG1229 | 575 | FwdA Formylmethanofuran dehydrogenase subunit A [E | 99.77 | |
| COG3653 | 579 | N-acyl-D-aspartate/D-glutamate deacylase [Secondar | 99.74 | |
| PF13147 | 304 | Amidohydro_4: Amidohydrolase; PDB: 3SFW_B 2FTW_A 2 | 99.64 | |
| cd01316 | 344 | CAD_DHOase The eukaryotic CAD protein is a trifunc | 99.64 | |
| KOG3892 | 407 | consensus N-acetyl-glucosamine-6-phosphate deacety | 99.54 | |
| cd01292 | 275 | metallo-dependent_hydrolases Superfamily of metall | 99.52 | |
| cd01294 | 335 | DHOase Dihydroorotase (DHOase) catalyzes the rever | 99.52 | |
| PF13594 | 68 | Amidohydro_5: Amidohydrolase; PDB: 4F0R_A 4F0S_A 1 | 99.29 | |
| cd01320 | 325 | ADA Adenosine deaminase (ADA) is a monomeric zinc | 99.28 | |
| TIGR01430 | 324 | aden_deam adenosine deaminase. This family include | 99.19 | |
| PRK05451 | 345 | dihydroorotase; Provisional | 99.18 | |
| TIGR00856 | 341 | pyrC_dimer dihydroorotase, homodimeric type. This | 99.15 | |
| PRK09358 | 340 | adenosine deaminase; Provisional | 99.1 | |
| PLN02599 | 364 | dihydroorotase | 99.04 | |
| cd00443 | 305 | ADA_AMPD Adenosine/AMP deaminase. Adenosine deamin | 98.6 | |
| TIGR00010 | 252 | hydrolase, TatD family. Several genomes have multi | 98.51 | |
| cd01310 | 251 | TatD_DNAse TatD like proteins; E.coli TatD is a cy | 98.5 | |
| PTZ00124 | 362 | adenosine deaminase; Provisional | 98.48 | |
| PRK10812 | 265 | putative DNAse; Provisional | 98.33 | |
| cd01321 | 345 | ADGF Adenosine deaminase-related growth factors (A | 98.27 | |
| cd00530 | 293 | PTE Phosphotriesterase (PTE) catalyzes the hydroly | 98.16 | |
| PRK11449 | 258 | putative deoxyribonuclease YjjV; Provisional | 98.1 | |
| PF00962 | 331 | A_deaminase: Adenosine/AMP deaminase immunodeficie | 98.02 | |
| COG1816 | 345 | Add Adenosine deaminase [Nucleotide transport and | 98.0 | |
| PRK10425 | 258 | DNase TatD; Provisional | 97.98 | |
| COG0084 | 256 | TatD Mg-dependent DNase [DNA replication, recombin | 97.88 | |
| PRK09875 | 292 | putative hydrolase; Provisional | 97.76 | |
| TIGR01431 | 479 | adm_rel adenosine deaminase-related growth factor. | 97.65 | |
| COG1099 | 254 | Predicted metal-dependent hydrolases with the TIM- | 97.62 | |
| PF01026 | 255 | TatD_DNase: TatD related DNase The Pfam entry find | 97.54 | |
| KOG1097 | 399 | consensus Adenine deaminase/adenosine deaminase [N | 97.22 | |
| COG0418 | 344 | PyrC Dihydroorotase [Nucleotide transport and meta | 97.07 | |
| cd01311 | 263 | PDC_hydrolase 2-pyrone-4,6-dicarboxylic acid (PDC) | 96.99 | |
| PF02126 | 308 | PTE: Phosphotriesterase family; InterPro: IPR00155 | 96.97 | |
| COG1735 | 316 | Php Predicted metal-dependent hydrolase with the T | 95.86 | |
| TIGR01429 | 611 | AMP_deaminase AMP deaminase. This model describes | 94.93 | |
| PF00449 | 121 | Urease_alpha: Urease alpha-subunit, N-terminal dom | 94.58 | |
| cd01319 | 496 | AMPD AMP deaminase (AMPD) catalyzes the hydrolytic | 94.22 | |
| PLN03055 | 602 | AMP deaminase; Provisional | 94.08 | |
| COG3618 | 279 | Predicted metal-dependent hydrolase of the TIM-bar | 93.9 | |
| PRK06361 | 212 | hypothetical protein; Provisional | 93.19 | |
| PLN02768 | 835 | AMP deaminase | 92.75 | |
| PRK08392 | 215 | hypothetical protein; Provisional | 91.98 | |
| PTZ00310 | 1453 | AMP deaminase; Provisional | 91.9 | |
| PF12890 | 142 | DHOase: Dihydro-orotase-like; InterPro: IPR024403 | 91.41 | |
| KOG2902 | 344 | consensus Dihydroorotase [Nucleotide transport and | 91.33 | |
| PTZ00310 | 1453 | AMP deaminase; Provisional | 90.74 | |
| COG2159 | 293 | Predicted metal-dependent hydrolase of the TIM-bar | 90.19 | |
| PF04909 | 273 | Amidohydro_2: Amidohydrolase; InterPro: IPR006992 | 86.6 | |
| PRK06740 | 331 | histidinol-phosphatase; Validated | 85.44 | |
| PRK00912 | 237 | ribonuclease P protein component 3; Provisional | 81.36 | |
| KOG3020 | 296 | consensus TatD-related DNase [Replication, recombi | 80.85 |
| >COG1574 Predicted metal-dependent hydrolase with the TIM-barrel fold [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-72 Score=583.20 Aligned_cols=526 Identities=37% Similarity=0.584 Sum_probs=473.2
Q ss_pred CccEEEEcCeEEeCCCCCCeeeEEEEECCEEEEecChHHHHhhccCCCeEEeCCCCeeecccccccccccccCccccccc
Q 008063 44 EADLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHFIPGGLQMARVK 123 (579)
Q Consensus 44 ~~~~likn~~v~~~~~~~~~~~~v~I~~GkI~~Ig~~~~~~~~~~~~~~viD~~g~~V~PG~ID~H~H~~~~~~~~~~~~ 123 (579)
.++++++||+|++++...+....|.|+||||++||..++.....+++.++||++|++|+|||||+|.|+..++.......
T Consensus 4 ~adlil~nG~i~T~~~~~p~aeAvaI~dGrI~avG~~~~~~~~~~~~t~viDL~Gk~v~PGfvDaH~Hl~~~G~~~~~~~ 83 (535)
T COG1574 4 AADLILHNGRIYTMDEARPTAEAVAIKDGRIVAVGSDAELKALAGPATEVIDLKGKFVLPGFVDAHLHLISGGLSLLELN 83 (535)
T ss_pred ccceeEECCEEEeccCCCcceeEEEEcCCEEEEEcChHHHHhhcCCCceEEeCCCCEeccccchhhHHHHHhhhhhhccc
Confidence 46799999999999887778889999999999999999988877788999999999999999999999999998776778
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCCCCeEEE--eCCCCCCCCCCCCChHHhhhhCCCCeEEEEeCCCchhhhcHHHHHHcCC
Q 008063 124 LRGVSHKDEFVRRVKEAVKNSKKGSWILG--GGWNNDLWGGDLPMASWIDDITPHNPVWLSRMDGHMGLANSVALQLVGI 201 (579)
Q Consensus 124 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~g--~~~~~~~~~~~~p~~~~ld~~~~~~p~~~~~~~~~~~~~n~~~~~~~g~ 201 (579)
+.++.+.+++.+.++...+..+.++|+.+ ++|..+.|.+..|+..++|++.+++|+++.+.++|..++|+++|+.+||
T Consensus 84 ~~~~~~~~~~~~~i~~~a~~~~~~~w~~~vG~g~~~~~~~~~~~t~~~lD~~~~~~Pv~l~r~~~H~a~~Ns~aL~~~Gi 163 (535)
T COG1574 84 LDGVRSLDDLLAALRRQAARTPPGQWVVVVGWGWDEQFWEERLPTLAELDAAAPDHPVLLIRLDGHVAVANSAALRLAGI 163 (535)
T ss_pred ccccCCHHHHHHHHHHHHHhCCCCCceEEEEcChhhhccccCCCcHHHhhccCCCCCEEEEeccChHHHHhHHHHHHcCC
Confidence 88999999999999999988888876665 5556666778899999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCeEEeCCCCCcCEEEhHhHHHHhcccCCCCCHHHHHHHHHH-HHHHHHhcCccEEEeCCcCCCCCccccch
Q 008063 202 TNLSEDPNGGTIMKTSSGEPTGLLIDAAMKLILPWIPEVSVDERREALLR-ASNLALSRGVTTVVDFGRYYPGESVQLSW 280 (579)
Q Consensus 202 ~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Git~v~~~~~~~~~~~~~~~~ 280 (579)
+..+++|.||.+.++.+|.++|++.|.+...+...+|..++++..+.... +++.+.+.|+|++.+++. + ...
T Consensus 164 ~~~t~~p~gg~~~~d~~g~ptG~L~e~a~~~~~~~~~~~~~~~~~~~~~~~a~~~l~s~GiT~v~d~~~-~------~~~ 236 (535)
T COG1574 164 TRDTPDPPGGIIGRDADGEPTGLLLENAQALVARLAPPPSPAEELEAAAARAARELNSLGITGVHDMAG-Y------QGY 236 (535)
T ss_pred CCCCCCCCCCcccccCCCCCCeeehHhhHHHHHHhcCCCCchHHHHHHHHHHHHHHHhcCCeEEEcccc-c------ccc
Confidence 99999999998889999999999999999999999998877777777766 899999999999999874 1 233
Q ss_pred HHHHHHHHHHhhcCCCeeEEEEccCccchhhHHHHHHhcCCCCCCceEEceEEEEEcCccCCCcccccCCCCCCCCCCcc
Q 008063 281 EDFADVYQWASYSEKMKIRVCLFFPLETWSSLADLINKTGHVLSDWVYLGGVKAFADGSLGSNSALFHEPYADEPHNYGL 360 (579)
Q Consensus 281 ~~~~~~~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~k~~~dg~~~~~~~~~~~~~~~~~~~~~~ 360 (579)
......++.+...+.+++++........... .............+++.+++|++.||+++++++.+.+||.+.++..|.
T Consensus 237 ~~~~~~~r~~~~~~~l~~rv~~~l~~~~~~~-~~~~~~~~~~~~~~~~~g~~K~f~Dgslg~rtA~l~~~y~d~~~~~G~ 315 (535)
T COG1574 237 YADYEAYRALAAGGELPVRVALLLFTEDLKE-ERLDLLRQTGAKGLLQGGGVKLFADGSLGERTALLAAPYADGPGPSGE 315 (535)
T ss_pred hhHHHHHHHHHhcCcceEEEEeeccccchhh-HHHhhcccCCccceeecCceEEEEeCCCCcchhhccCcccCCCCCCCC
Confidence 4666888899999999999998776655443 111112223356678888999999999999999999999999987789
Q ss_pred cCCCHHHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhcCCCCCCceEeeccCCChhhHHHHhhCCcEEEecc
Q 008063 361 QVMELESLLSMTMASDKSGLQVAIHAIGDRANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLASGTAARFGDQGIVASMQP 440 (579)
Q Consensus 361 ~~~~~~~l~~~~~~a~~~g~~i~iH~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~H~~~~~~~~~~~~~~~~i~~~~~p 440 (579)
+.++++.+.++++.+.++|+++.+|+.||.+++.+++++++....++..+.++.++|++++++++++++++.|+.++++|
T Consensus 316 ~l~~~e~l~~~v~~a~~~gl~v~vHAiGD~Av~~~LdafE~~~~~~~~~~~r~rieH~~~v~~~~i~R~~~Lgv~~svQP 395 (535)
T COG1574 316 LLLTEEELEELVRAADERGLPVAVHAIGDGAVDAALDAFEKARKKNGLKGLRHRIEHAELVSPDQIERFAKLGVIASVQP 395 (535)
T ss_pred cccCHHHHHHHHHHHHHCCCcEEEEEechHHHHHHHHHHHHHhhhcCCccCCceeeeeeecCHhHHHHHHhcCceEeecc
Confidence 99999999999999999999999999999999999999999999998889999999999999999999999999999999
Q ss_pred cccccchhHHHHhhChhhhhhhhhhHHHHHHCCCeeeecCCCCCCCCCHHHHHHHHHcccCCCCCCCCCCCCCCCHHHHH
Q 008063 441 QHLLDDADSARKKLGVDRAERESYLFQSLLANNALLALGSDWPVADINPLCAIRTAMKRIPPGWDNAWIPSERISLTDAL 520 (579)
Q Consensus 441 ~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al 520 (579)
.+..++.+++.+++|.+|. +..+|++.|+++|+++++|||+|..+.+||..++.++.|....+.... .+..||.+|||
T Consensus 396 ~f~~~~~~~~~~rlG~~r~-~~~~p~~~ll~~G~~la~gSD~Pv~~~dP~~~i~~AVtr~~~~g~~~~-~~~~L~~~eAL 473 (535)
T COG1574 396 NFLFSDGEWYVDRLGEERA-SRSYPFRSLLKAGVPLAGGSDAPVEPYDPWLGIYAAVTRKTPGGRVLG-PEERLTREEAL 473 (535)
T ss_pred ccccccchHHHHhhhhhhh-hccCcHHHHHHCCCeEeccCCCCCCCCChHHHHHHHHcCCCCCCCCCc-cccccCHHHHH
Confidence 9999888999999999999 999999999999999999999999999999999999998876542221 22279999999
Q ss_pred HHHcHHHHHhcccCCccccccCCCcccEEEeCCCCCC-ChhhccCCeEEEEEECCEEeCC
Q 008063 521 IAHTLSAARACFLENDVGSLSPGKIADFVILSTSSWE-DFAAEVSASIEATYVSGVQAYP 579 (579)
Q Consensus 521 ~~~T~npA~~lgl~~~~G~I~~G~~ADlvvld~~~~~-~~~~~~~~~v~~v~v~G~~v~~ 579 (579)
+++|.++|.+.|.++++|+|++||.|||+|+|.|+|+ ++..++..+|+.||++||+||.
T Consensus 474 ~~yT~~~A~a~~~e~~~G~Le~G~~AD~~Vld~d~f~~~~~~i~~~~v~~T~~~Gk~VY~ 533 (535)
T COG1574 474 RAYTEGGAYASGAEGEKGSLEPGKLADFAVLDRDPFTVDPDSIKDTKVVLTIVAGKVVYR 533 (535)
T ss_pred HHHhhhhHHhhhccccccccccCceeeEEEecCCcccCChHHhccceEEEEEEcCeEeec
Confidence 9999999999999999999999999999999999999 8888999999999999999985
|
|
| >cd01300 YtcJ_like YtcJ_like metal dependent amidohydrolases | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-60 Score=511.86 Aligned_cols=475 Identities=44% Similarity=0.680 Sum_probs=413.1
Q ss_pred EEEEECCEEEEecChHHHHhhccCCCeEEeCCCCeeecccccccccccccCccccccccCCCCCHHHHHHHHHHHHHcCC
Q 008063 66 SMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHFIPGGLQMARVKLRGVSHKDEFVRRVKEAVKNSK 145 (579)
Q Consensus 66 ~v~I~~GkI~~Ig~~~~~~~~~~~~~~viD~~g~~V~PG~ID~H~H~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 145 (579)
.|.|+||||++||+..+.....+++.+++|++|++|+|||||+|+|+..++.....+++.++.+.+++...+++..+..+
T Consensus 1 a~~v~~g~i~~vg~~~~~~~~~~~~~~~~d~~~~~~~PGfiD~H~H~~~~~~~~~~~~l~~~~s~~e~~~~l~~~~~~~~ 80 (479)
T cd01300 1 AVAVRDGRIVAVGSDAEAKALKGPATEVIDLKGKTVLPGFIDSHSHLLLGGLSLLWLDLSGVTSKEEALARIREDAAAAP 80 (479)
T ss_pred CeEEECCEEEEECCHHHHHhhcCCCcEEEECCCCEEccCcccccccchhhcccceeecCCCCCCHHHHHHHHHHHHHhCC
Confidence 37899999999998777655445678999999999999999999999988887778889999999999999999888888
Q ss_pred CCCeEEEeCCCCCCCC-CCCCChHHhhhhCCCCeEEEEeCCCchhhhcHHHHHHcCCCCCCCCCCCCeEEeCCCCCcCEE
Q 008063 146 KGSWILGGGWNNDLWG-GDLPMASWIDDITPHNPVWLSRMDGHMGLANSVALQLVGITNLSEDPNGGTIMKTSSGEPTGL 224 (579)
Q Consensus 146 ~~~~~~g~~~~~~~~~-~~~p~~~~ld~~~~~~p~~~~~~~~~~~~~n~~~~~~~g~~~~~~~~~g~~~~~~~~~~~~g~ 224 (579)
.++||+|.||.+..|. +..|+++.||++++++|+++.+.++|..++|+++|+.+||+..++.|.|+.+.++++|+++|+
T Consensus 81 ~~~wi~~~g~~~~~~~~~~~p~~~~LD~~~~d~Pv~l~~~~~H~~~~Ns~al~~~gi~~~~~~~~~g~~~~~~~g~~tG~ 160 (479)
T cd01300 81 PGEWILGFGWDESLLGEGRYPTRAELDAVSPDRPVLLLRRDGHSAWVNSAALRLAGITRDTPDPPGGEIVRDADGEPTGV 160 (479)
T ss_pred CCCeEEECCcCHHHcCCCCCCCHHHHhcccCCCcEEEEccCchHHHHHHHHHHHcCCCCCCCCCCCCEEeeCCCCCccEE
Confidence 8999999999999995 689999999999999999999999999999999999999999999999999999999999999
Q ss_pred EhHhHHHHhcccCCCCCHHHHHHHHHHHHHHHHhcCccEEEeCCcCCCCCccccchHHHHHHHHHHhhcCCCeeEEEEcc
Q 008063 225 LIDAAMKLILPWIPEVSVDERREALLRASNLALSRGVTTVVDFGRYYPGESVQLSWEDFADVYQWASYSEKMKIRVCLFF 304 (579)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Git~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~ 304 (579)
+.|.+...+...++..+.++..+.++...+.+++.|+|++.+.+.. .......++.+.+++.+++|+....
T Consensus 161 l~e~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GiT~v~d~~~~---------~~~~~~~~~~l~~~~~l~~rv~~~~ 231 (479)
T cd01300 161 LVEAAAALVLEAVPPPTPEERRAALRAAARELASLGVTTVHDAGGG---------AADDIEAYRRLAAAGELTLRVRVAL 231 (479)
T ss_pred EeHhHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCCcEEEcCCCC---------hhhHHHHHHHHHHCCCCeEEEEEEe
Confidence 9999888888888888999999999999999999999999997532 1123567888888887888876543
Q ss_pred Cccchh--hHHHHHHhcCCCCCCceEEceEEEEEcCccCCCcccccCCCCCCCCCCcccCCCHHHHHHHHHHHHHCCCeE
Q 008063 305 PLETWS--SLADLINKTGHVLSDWVYLGGVKAFADGSLGSNSALFHEPYADEPHNYGLQVMELESLLSMTMASDKSGLQV 382 (579)
Q Consensus 305 ~~~~~~--~~~~~~~~~~~~~~~~~~~~g~k~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~i 382 (579)
...... ...+..........++++.+++|++.||+++++++++.+||.+.++..|...++++.+.++++.|++.|+++
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vKl~~DG~~~~~ta~l~~pY~~~~~~~g~~~~~~e~l~~~~~~a~~~g~~v 311 (479)
T cd01300 232 YVSPLAEDLLEELGARKNGAGDDRLRLGGVKLFADGSLGSRTAALSEPYLDSPGTGGLLLISPEELEELVRAADEAGLQV 311 (479)
T ss_pred ccccchhhhhhHHhhhccCCCCCcEEEeeEEEEEcCCCCcccccccCCcCCCCCCCCCccCCHHHHHHHHHHHHHCCCCE
Confidence 322211 111111112233567899999999999999999999999999988888888999999999999999999999
Q ss_pred EEEecchHHHHHHHHHHHHHHHhcCCCCCCceEeeccCCChhhHHHHhhCCcEEEecccccccchhHHHHh-hChhhhhh
Q 008063 383 AIHAIGDRANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLASGTAARFGDQGIVASMQPQHLLDDADSARKK-LGVDRAER 461 (579)
Q Consensus 383 ~iH~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~H~~~~~~~~~~~~~~~~i~~~~~p~~~~~~~~~~~~~-l~~~~~~~ 461 (579)
.+|+.|+.+++..++.+++.....|..+.++.+.|+..+++++++++++.|+.+++||.+...+.+..... +++.+. +
T Consensus 312 ~~Ha~gd~~i~~~l~~~~~~~~~~g~~~~r~~i~H~~~~~~~~~~~l~~~gv~~~~~P~~~~~~~~~~~~~~lg~~~~-~ 390 (479)
T cd01300 312 AIHAIGDRAVDTVLDALEAALKDNPRADHRHRIEHAQLVSPDDIPRFAKLGVIASVQPNHLYSDGDAAEDRRLGEERA-K 390 (479)
T ss_pred EEEEecHHHHHHHHHHHHHHHHhcCCCCCCceeeecccCCHHHHHHHHHcCCceEeCcccccCchHHHHHhcccHHHH-h
Confidence 99999999999999999998888887788999999999999999999999999999999987776655544 777777 8
Q ss_pred hhhhHHHHHHCCCeeeecCCCCCCCCCHHHHHHHHHcccCCCCCCCCCCCCCCCHHHHHHHHcHHHHHhcccCCcccccc
Q 008063 462 ESYLFQSLLANNALLALGSDWPVADINPLCAIRTAMKRIPPGWDNAWIPSERISLTDALIAHTLSAARACFLENDVGSLS 541 (579)
Q Consensus 462 ~~~~l~~l~~~Gi~v~~gsD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~npA~~lgl~~~~G~I~ 541 (579)
..+|++.+++.|+++++|||++..+.+++..++.++.+........+..+.+++++++|+++|.|||+.+|+++++|+|+
T Consensus 391 ~~~p~~~~~~~Gv~v~lGSD~~~~~~~p~~~~~~av~~~~~~~~~~~~~~~~ls~~~al~~~T~~~A~~lg~e~~~GsLe 470 (479)
T cd01300 391 RSYPFRSLLDAGVPVALGSDAPVAPPDPLLGIWAAVTRKTPGGGVLGNPEERLSLEEALRAYTIGAAYAIGEEDEKGSLE 470 (479)
T ss_pred cCchHHHHHHCCCeeeccCCCCCCCCCHHHHHHHHheeeCCCCCCCCCccccCCHHHHHHHHHHHHHHHhcccccccccc
Confidence 88999999999999999999988889999999999987654332222356789999999999999999999999899999
Q ss_pred CCCcccEEE
Q 008063 542 PGKIADFVI 550 (579)
Q Consensus 542 ~G~~ADlvv 550 (579)
+||.|||||
T Consensus 471 ~Gk~ADlvv 479 (479)
T cd01300 471 PGKLADFVV 479 (479)
T ss_pred CCcccceeC
Confidence 999999986
|
YtcJ is a Bacillus subtilis ORF of unknown function. The Arabidopsis homolog LAF3 has been identified as a factor required for photochrome A signalling. |
| >PF07969 Amidohydro_3: Amidohydrolase family; InterPro: IPR013108 Amidohydrolases are a diverse superfamily of enzymes which catalyse the hydrolysis of amide or amine bonds in a large number of different substrates including urea, cytosine, AMP, formylmethanofuran, etc [, ] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-41 Score=354.15 Aligned_cols=389 Identities=42% Similarity=0.612 Sum_probs=318.4
Q ss_pred eeecccccccccccccCccc-cccccCCCCCHHHHHHHHHHHHHcCCCCCeEEEeCCCCCCCC-CCCC-ChHHh--hhhC
Q 008063 100 VVVPGFIDSHVHFIPGGLQM-ARVKLRGVSHKDEFVRRVKEAVKNSKKGSWILGGGWNNDLWG-GDLP-MASWI--DDIT 174 (579)
Q Consensus 100 ~V~PG~ID~H~H~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~-~~~p-~~~~l--d~~~ 174 (579)
+|+|||||+|+|+...+... ..++..+..+..++.+.++.+..+ .|.||....|. +++| +++.| |.+.
T Consensus 1 ~v~PGfiD~H~H~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~~-------~~~g~~~~~~~~~~~~~~~~~L~~D~~~ 73 (404)
T PF07969_consen 1 TVMPGFIDSHTHLDSAGLWDPRSVDLSGQGSIDEILCGIRAAAAK-------VGFGWDESLFPEGRLPPTREELPWDEAS 73 (404)
T ss_dssp EEEE-EEEEEEEHTTHHHHHTCSECHCTTTCCCCHHCCHHT-SSS-------EEEEEHHHHHCCSSTCTCHHHHHCTTSS
T ss_pred CCccChhHHhhChHHHHHHHhccCCCCCCCCHHHHHHHHHHHHHh-------ccCCCCHHHhhcccccCCHHHhhhhhHh
Confidence 68999999999998766554 567778888888888888877553 88999988884 6777 99999 9999
Q ss_pred CCCeEEEEeCCCchhhhcHHHHHHcCCCCCCCCCCCCeEEeCCCCCcCEEEhHhHHHHhcccCCC--CCHHHHHHHHHHH
Q 008063 175 PHNPVWLSRMDGHMGLANSVALQLVGITNLSEDPNGGTIMKTSSGEPTGLLIDAAMKLILPWIPE--VSVDERREALLRA 252 (579)
Q Consensus 175 ~~~p~~~~~~~~~~~~~n~~~~~~~g~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 252 (579)
+++|+++.+.++|..++|+++++. .+|.++|++.+.+.......++. .+.++.++.++..
T Consensus 74 ~~~Pv~~~~~~~h~~~~Ns~al~~------------------~~g~~~G~l~e~a~~~~~~~~~~~~~~~~~~~~~l~~~ 135 (404)
T PF07969_consen 74 PDRPVFIRRFDGHSAWLNSAALEL------------------ADGEPTGILREAAMVLGWRAIPATAAELEEMREALREA 135 (404)
T ss_dssp SSSHEEEEECCCSEEEECHHHHHH------------------TEETTCCEEEHHHHHHCCHHHHHTHHHHHHHHHHHHHH
T ss_pred cceEEEEEeCcChHHHHhHHHhhc------------------cccCCceeeehhhhhhHHhhCccccCCHHHHHHHHHHH
Confidence 999999999999999999999998 56789999999988666666666 5678888888888
Q ss_pred HHHHHhcCccEEEeCCcCCCCCccccchHHHHHHHHHHhhcCCCeeEEEEccCccchhhHHHHHHhcCCCCCCceEEceE
Q 008063 253 SNLALSRGVTTVVDFGRYYPGESVQLSWEDFADVYQWASYSEKMKIRVCLFFPLETWSSLADLINKTGHVLSDWVYLGGV 332 (579)
Q Consensus 253 ~~~~~~~Git~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 332 (579)
...+.+.|+|++.++... ....+.....++.+.....+++++..+. +.+++
T Consensus 136 ~~~~~a~GiTt~~d~~~~------~~~~~~~~~~~~~l~~~~~l~~rv~~~~-----------------------~~~~v 186 (404)
T PF07969_consen 136 AMAAGAYGITTVLDYGGG------FASDPEDLEALRELAAEGGLPLRVHLYP-----------------------RIGGV 186 (404)
T ss_dssp HHHHCHTCEEEETTCECC------CGEHHHHHHHHHHHHHCTC--SEEEEEE-----------------------EEEEE
T ss_pred HHHhcCCCeEEecCCccc------cCCCHHHHHHHHHHhhhcCCCeeeeeec-----------------------ccCce
Confidence 999999999999998621 1245677888888999999999988653 56889
Q ss_pred EEEEcCccCCCcccccCC-CCCCC----CCCcccCCCHHHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhcC
Q 008063 333 KAFADGSLGSNSALFHEP-YADEP----HNYGLQVMELESLLSMTMASDKSGLQVAIHAIGDRANDLVLDMYKSVVVTTG 407 (579)
Q Consensus 333 k~~~dg~~~~~~~~~~~~-~~~~~----~~~~~~~~~~~~l~~~~~~a~~~g~~i~iH~~g~~~~~~~~~~~~~~~~~~~ 407 (579)
|.+.||......+.+..| +.+.. ++.+....+++.+.++++.+.+.|+++.+|+.|+.+++.+++++++....
T Consensus 187 k~~~dg~~~~~~a~~~~~~~~~~~g~~~~~~g~~~~~~~~l~~~v~~a~~~g~~v~vHa~gd~a~~~~l~a~~~~~~~-- 264 (404)
T PF07969_consen 187 KIFADGSPGGRTALLEEPYYADEPGAPVHISGLPSFDPEELEELVRAAREAGLQVAVHAIGDRAIDEALDAIEAARAR-- 264 (404)
T ss_dssp EEESSSSTTHHHHHHHHHHHHHHHTSEEEETC--SSSHHHHHHHHHHHHHCT-EEEEEEESHHHHHHHHHHHHHHTCC--
T ss_pred eeccccccccchhhhccccccCcccccccccccccccchhHHHHHHHHHhcCCeeEEEEcCCchHHhHHHHHHhhccc--
Confidence 999999988777777776 44433 34566778888899999999999999999999999999999999887443
Q ss_pred CCCCCceEeeccCCChhhHHHHhhCCcEEEecccccccch-hHHHHhhChhhhhhhhhhHHHHHHCCCeeeecCCCCCCC
Q 008063 408 KRDQRFRIEHAQHLASGTAARFGDQGIVASMQPQHLLDDA-DSARKKLGVDRAERESYLFQSLLANNALLALGSDWPVAD 486 (579)
Q Consensus 408 ~~~~~~~i~H~~~~~~~~~~~~~~~~i~~~~~p~~~~~~~-~~~~~~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD~~~~~ 486 (579)
..+.|+...++++++++++.++..+++|.+...+. ......+++++. +...+++.+.++|+++++|||++..+
T Consensus 265 -----~~i~h~~~~~~~~~~~~~~l~~~~~~~p~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~Gv~v~~gsD~p~~~ 338 (404)
T PF07969_consen 265 -----GRIEHAELIDPDDIERMAELGVTASVQPHFLFSWGGEWYEERLGPERA-RRIYPIRSLLDAGVRVALGSDAPVSP 338 (404)
T ss_dssp -----HEEEEHCBCCHHHHHHHHHHTTEEEECCTHHHHETEETHHHHHHHHCG-GGBTHHHHHHHCTTEEEE--TTTTSS
T ss_pred -----ceeeccccCCHHHHHHHHHhCCccccChhHhhhccchhhhhhhhhHHH-HHHhHHHHHHhccCceecCcCCcccc
Confidence 28999999999999999999999999997666555 667778888887 88899999999999999999999989
Q ss_pred CCHHHHHHHHHcccCCCCC--CCCCCCCCCCHHHHHHHHcHHHHHhcccCCccccccCCCcccEEE
Q 008063 487 INPLCAIRTAMKRIPPGWD--NAWIPSERISLTDALIAHTLSAARACFLENDVGSLSPGKIADFVI 550 (579)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~ls~~~al~~~T~npA~~lgl~~~~G~I~~G~~ADlvv 550 (579)
.+++..++.++.+...... ..+.....+|++|||+++|+|||+.+|+++++|+|+|||.|||||
T Consensus 339 ~~P~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~eAl~~~T~~~A~~~g~~~~~Gsl~~Gk~AD~vV 404 (404)
T PF07969_consen 339 PNPFRGIWAAVTRQMAGERSGPVLGPEQRLSLEEALRAYTSNPARALGLEDRKGSLEPGKLADFVV 404 (404)
T ss_dssp CCHHHHHHHHHHHHHCHHTHHHCCGGTGSSHHHHHHHHTTHHHHHHTT-TTTSSSSSTTSBS-EEE
T ss_pred cCcchhhhhhhccccccccccccccccccCCHHHHHHHHhHHHHHHcCCCCCcceECCCCCcCeEC
Confidence 9999999988876543210 112223779999999999999999999999889999999999997
|
Also included in this superfamily are the phopshotriesterase enzymes, which hydrolyse P-O bonds. Members participate in a large number of processes including nucleotide metabolism, detoxification and neuronal development. They use a variety of divalent metal cofactors for catalysis: for example adenosine deaminase binds a single zinc ion, phopsphotriesterase binds two, while urease binds nickel. It has been postulated that since some of these proteins, such as those some of those involved in neuronal devlopment, appear to have lost their metal-binding centres, their function may simply be to bind, but not hydrolyse, their target molecules. This entry represents a subset of amidohydrolase domains that participate in different functions including cytosine degradation, atrazine degradation and other metabolic processes. The structure of the domain from Escherichia coli has been studied, and like other amidohydrolases it forms a classical alpha-beta TIM-barrel fold []. The active site is located in the mouth of the enzyme barrel and contains a bound iron ion that coordinates a hydroxyl nucleophile. Substrate binding involves a significant conformational change that sequesters the reaction complex from solvent.; PDB: 4F0R_A 4F0S_A 1V4Y_A 1M7J_A 1RK5_A 1RJP_A 1RJR_A 1RJQ_A 1RK6_A 1V51_A .... |
| >PRK06687 chlorohydrolase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-37 Score=327.75 Aligned_cols=379 Identities=21% Similarity=0.286 Sum_probs=255.1
Q ss_pred EEEEcCeEEeCCCCC--CeeeEEEEECCEEEEecChHHHHhhccCCCeEEeCCCCeeecccccccccccccCcccccccc
Q 008063 47 LVVTNGVIFTGDDSL--LFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHFIPGGLQMARVKL 124 (579)
Q Consensus 47 ~likn~~v~~~~~~~--~~~~~v~I~~GkI~~Ig~~~~~~~~~~~~~~viD~~g~~V~PG~ID~H~H~~~~~~~~~~~~~ 124 (579)
++|+|++|+++++.. ..+++|+|+||||++|++..+... ++..++||+.|++|+|||||+|+|+++....
T Consensus 2 ~~~~n~~vvt~d~~~~~~~~g~VlV~~g~I~aVg~~~~~~~--~~~~~viD~~g~~v~PGlIn~H~H~~~~~~r------ 73 (419)
T PRK06687 2 KVFQHVNIVTCDQDFHVYLDGILAVKDSQIVYVGQDKPAFL--EQAEQIIDYQGAWIMPGLVNCHTHSAMTGLR------ 73 (419)
T ss_pred cceEeeEEEEeCCCceEecCcEEEEECCEEEEecCcccccc--cccCeEEeCCCCEEccceeeeccCCCccccc------
Confidence 578999999987643 367899999999999998654321 2356899999999999999999999775431
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCCCeEEEeCCCCCCCCCCCCChHHhhhhCCCCeEEEEeCCCchhhhcHHHHHHcCCCCC
Q 008063 125 RGVSHKDEFVRRVKEAVKNSKKGSWILGGGWNNDLWGGDLPMASWIDDITPHNPVWLSRMDGHMGLANSVALQLVGITNL 204 (579)
Q Consensus 125 ~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~p~~~~ld~~~~~~p~~~~~~~~~~~~~n~~~~~~~g~~~~ 204 (579)
|... ..+...|+....- |
T Consensus 74 -g~~~---------------------------------~~~~~~wl~~~~~--~-------------------------- 91 (419)
T PRK06687 74 -GIRD---------------------------------DSNLHEWLNDYIW--P-------------------------- 91 (419)
T ss_pred -cccC---------------------------------CCCHHHHHHhhhc--c--------------------------
Confidence 1110 1112233332100 0
Q ss_pred CCCCCCCeEEeCCCCCcCEEEhHhHHHHhcccCCCCCHHHHHHHHHHHHHHHHhcCccEEEeCCcCCCCCccccchHHHH
Q 008063 205 SEDPNGGTIMKTSSGEPTGLLIDAAMKLILPWIPEVSVDERREALLRASNLALSRGVTTVVDFGRYYPGESVQLSWEDFA 284 (579)
Q Consensus 205 ~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Git~v~~~~~~~~~~~~~~~~~~~~ 284 (579)
.....++++.+...+.++.+++++|+|++.++.+..+ . . ..
T Consensus 92 -------------------------------~~~~~~~~~~~~~~~~a~~e~l~~GvTTv~d~~~~~~-~----~---~~ 132 (419)
T PRK06687 92 -------------------------------AESEFTPDMTTNAVKEALTEMLQSGTTTFNDMYNPNG-V----D---IQ 132 (419)
T ss_pred -------------------------------ccccCCHHHHHHHHHHHHHHHHhcCcceeehhhcccc-c----c---HH
Confidence 0012344667778888999999999999999753111 0 1 12
Q ss_pred HHHHHHhhcCCCeeEEEEccCc-----cc----hhhHHHHHHhcCCCCCCceEEceEEEEEcCccCCCcccccCCCCCCC
Q 008063 285 DVYQWASYSEKMKIRVCLFFPL-----ET----WSSLADLINKTGHVLSDWVYLGGVKAFADGSLGSNSALFHEPYADEP 355 (579)
Q Consensus 285 ~~~~~~~~~~~~~i~v~~~~~~-----~~----~~~~~~~~~~~~~~~~~~~~~~g~k~~~dg~~~~~~~~~~~~~~~~~ 355 (579)
..++.+.+ .++|..+.... .. ..+..++++......... ++... ..+.+
T Consensus 133 ~~~~a~~~---~Gir~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-----i~~~~---------~~~~~----- 190 (419)
T PRK06687 133 QIYQVVKT---SKMRCYFSPTLFSSETETTAETISRTRSIIDEILKYKNPN-----FKVMV---------APHSP----- 190 (419)
T ss_pred HHHHHHHH---hCCceEeccccccCCcccHHHHHHHHHHHHHHHhccCCCc-----eEEEE---------eCCCC-----
Confidence 33333332 24444432211 10 111222222110000111 22211 12222
Q ss_pred CCCcccCCCHHHHHHHHHHHHHCCCeEEEEecchH-HHHHHHHHHHH----HHHhcCCCCCCceEeeccCCChhhHHHHh
Q 008063 356 HNYGLQVMELESLLSMTMASDKSGLQVAIHAIGDR-ANDLVLDMYKS----VVVTTGKRDQRFRIEHAQHLASGTAARFG 430 (579)
Q Consensus 356 ~~~~~~~~~~~~l~~~~~~a~~~g~~i~iH~~g~~-~~~~~~~~~~~----~~~~~~~~~~~~~i~H~~~~~~~~~~~~~ 430 (579)
..++++.++++++.|+++|+++++|+.+.. +....++.+.. .....+..+.+..+.||.+++++++++++
T Consensus 191 -----~~~s~e~l~~~~~~A~~~g~~i~~H~~e~~~e~~~~~~~~g~~~~~~l~~~g~l~~~~~~~H~~~~~~~~~~~la 265 (419)
T PRK06687 191 -----YSCSRDLLEASLEMAKELNIPLHVHVAETKEESGIILKRYGKRPLAFLEELGYLDHPSVFAHGVELNEREIERLA 265 (419)
T ss_pred -----CCCCHHHHHHHHHHHHHcCCcEEEEeCCCHHHHHHHHHHHCcCHHHHHHHcCCCCCCeEEEEEecCCHHHHHHHH
Confidence 237899999999999999999999998764 44555544332 34556778889999999999999999999
Q ss_pred hCCcEEEecccccccchhHHHHhhChhhhhhhhhhHHHHHHCCCeeeecCCCCCC--CCCHHHHHHHHHcccCCCCCCCC
Q 008063 431 DQGIVASMQPQHLLDDADSARKKLGVDRAERESYLFQSLLANNALLALGSDWPVA--DINPLCAIRTAMKRIPPGWDNAW 508 (579)
Q Consensus 431 ~~~i~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 508 (579)
+.|+.+++||.++. .++ ...+|++.++++|+++++|||+..+ +.+++.+++.+...... ..
T Consensus 266 ~~g~~v~~~P~sn~--------~l~-----~g~~p~~~~~~~Gv~v~lGtD~~~~~~~~~~~~~~~~~~~~~~~----~~ 328 (419)
T PRK06687 266 SSQVAIAHNPISNL--------KLA-----SGIAPIIQLQKAGVAVGIATDSVASNNNLDMFEEGRTAALLQKM----KS 328 (419)
T ss_pred HcCCeEEECcHHhh--------hhc-----cCCCcHHHHHHCCCeEEEeCCCCCCCCChhHHHHHHHHHHHhcc----cc
Confidence 99999999999875 233 4566899999999999999997533 46888888876432110 01
Q ss_pred CCCCCCCHHHHHHHHcHHHHHhcccCCccccccCCCcccEEEeCCCC-CC--C----hhhc----cCCeEEEEEECCEEe
Q 008063 509 IPSERISLTDALIAHTLSAARACFLENDVGSLSPGKIADFVILSTSS-WE--D----FAAE----VSASIEATYVSGVQA 577 (579)
Q Consensus 509 ~~~~~ls~~~al~~~T~npA~~lgl~~~~G~I~~G~~ADlvvld~~~-~~--~----~~~~----~~~~v~~v~v~G~~v 577 (579)
.....++++++++|+|.+||+.+|+++++|+|++||.|||+++|.+. +. + +..+ ...+|..|||+||+|
T Consensus 329 ~~~~~~~~~~~l~~aT~~gA~~lg~~~~~G~l~~G~~ADlv~~d~~~~~~~~p~~~~~~~lv~~~~~~~v~~v~v~G~~v 408 (419)
T PRK06687 329 GDASQFPIETALKVLTIEGAKALGMENQIGSLEVGKQADFLVIQPQGKIHLQPQENMLSHLVYAVKSSDVDDVYIAGEQV 408 (419)
T ss_pred CCCccCCHHHHHHHHhHHHHHHcCCCCCCcccCCCccCCEEEECCCCCCCcCCccCHHHHhheeCCCCCccEEEECCEEE
Confidence 12345899999999999999999999889999999999999999752 21 2 1222 256899999999998
Q ss_pred C
Q 008063 578 Y 578 (579)
Q Consensus 578 ~ 578 (579)
+
T Consensus 409 ~ 409 (419)
T PRK06687 409 V 409 (419)
T ss_pred E
Confidence 6
|
|
| >PRK09045 N-ethylammeline chlorohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-37 Score=329.04 Aligned_cols=387 Identities=23% Similarity=0.277 Sum_probs=254.3
Q ss_pred CCccEEEEcCeEEeCCC--CCCeeeEEEEECCEEEEecChHHHHhhccCCCeEEeCCCCeeecccccccccccccCcccc
Q 008063 43 LEADLVVTNGVIFTGDD--SLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHFIPGGLQMA 120 (579)
Q Consensus 43 ~~~~~likn~~v~~~~~--~~~~~~~v~I~~GkI~~Ig~~~~~~~~~~~~~~viD~~g~~V~PG~ID~H~H~~~~~~~~~ 120 (579)
.+++++|+|+.|++++. ....+++|+|+||||++|++..+.... +++.++||++|++|+|||||+|+|+++...
T Consensus 5 ~~~~~li~~~~v~~~~~~~~~~~~~~v~i~~g~I~~Vg~~~~~~~~-~~~~~~iD~~g~~v~PG~id~H~Hl~~~~~--- 80 (443)
T PRK09045 5 EPVDLLIEARWIVPVEPAGVVLEDHAVAIRDGRIVAILPRAEARAR-YAAAETVELPDHVLIPGLINAHTHAAMSLL--- 80 (443)
T ss_pred ccccEEEEccEEEEeCCCceEeeccEEEEECCEEEEecCccccccc-CCcceEEeCCCCEEecCEeccccChhhHhh---
Confidence 34689999999999863 234677999999999999986543211 245789999999999999999999865421
Q ss_pred ccccCCCCCHHHHHHHHHHHHHcCCCCCeEEEeCCCCCCCCCCCCChHHhhhhCCCCeEEEEeCCCchhhhcHHHHHHcC
Q 008063 121 RVKLRGVSHKDEFVRRVKEAVKNSKKGSWILGGGWNNDLWGGDLPMASWIDDITPHNPVWLSRMDGHMGLANSVALQLVG 200 (579)
Q Consensus 121 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~p~~~~ld~~~~~~p~~~~~~~~~~~~~n~~~~~~~g 200 (579)
++... ..+...|+....
T Consensus 81 ----~g~~~---------------------------------~~~~~~w~~~~~-------------------------- 97 (443)
T PRK09045 81 ----RGLAD---------------------------------DLPLMTWLQDHI-------------------------- 97 (443)
T ss_pred ----hhccC---------------------------------CCCHHHHHHhhh--------------------------
Confidence 01000 011112221100
Q ss_pred CCCCCCCCCCCeEEeCCCCCcCEEEhHhHHHHhcccCCCCCHHHHHHHHHHHHHHHHhcCccEEEeCCcCCCCCccccch
Q 008063 201 ITNLSEDPNGGTIMKTSSGEPTGLLIDAAMKLILPWIPEVSVDERREALLRASNLALSRGVTTVVDFGRYYPGESVQLSW 280 (579)
Q Consensus 201 ~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Git~v~~~~~~~~~~~~~~~~ 280 (579)
........++++.+.........++++|+|++.++..+
T Consensus 98 --------------------------------~~~~~~~~~~~~~~~~~~~~~~e~l~~G~Ttv~d~~~~---------- 135 (443)
T PRK09045 98 --------------------------------WPAEGAWVSEEFVRDGTLLAIAEMLRGGTTCFNDMYFF---------- 135 (443)
T ss_pred --------------------------------hhhhhccCCHHHHHHHHHHHHHHHHhcCCcEEEecccc----------
Confidence 00000123557778888889999999999999997421
Q ss_pred HHHHHHHHHHhhcCCCeeEEEEccCccc-----hhhHHHHHHhcCCCCCCceEEceEEEEEcCccCCCcccccCCCCCCC
Q 008063 281 EDFADVYQWASYSEKMKIRVCLFFPLET-----WSSLADLINKTGHVLSDWVYLGGVKAFADGSLGSNSALFHEPYADEP 355 (579)
Q Consensus 281 ~~~~~~~~~~~~~~~~~i~v~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~g~k~~~dg~~~~~~~~~~~~~~~~~ 355 (579)
.+ ...+... +.++|......... .....+...........+.....+++.. ....+
T Consensus 136 ~~--~~~~~~~---~~G~R~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~~~~---------~~~~~----- 196 (443)
T PRK09045 136 PE--AAAEAAH---QAGMRAQIGMPVLDFPTAWASDADEYLAKGLELHDQWRHHPLISTAF---------APHAP----- 196 (443)
T ss_pred HH--HHHHHHH---HcCCeEEEecccccCCCccccCHHHHHHHHHHHHHHhcCCCcEEEEE---------eCCCC-----
Confidence 11 1122222 23345543221111 0111111110000000000001122211 11122
Q ss_pred CCCcccCCCHHHHHHHHHHHHHCCCeEEEEecch-HHHHHHHHHH----HHHHHhcCCCCCCceEeeccCCChhhHHHHh
Q 008063 356 HNYGLQVMELESLLSMTMASDKSGLQVAIHAIGD-RANDLVLDMY----KSVVVTTGKRDQRFRIEHAQHLASGTAARFG 430 (579)
Q Consensus 356 ~~~~~~~~~~~~l~~~~~~a~~~g~~i~iH~~g~-~~~~~~~~~~----~~~~~~~~~~~~~~~i~H~~~~~~~~~~~~~ 430 (579)
..++++.++++++.|+++|+++.+|+... .+....++.+ -+.....+..+.+..+.|+.+++++++++++
T Consensus 197 -----~~~~~~~l~~~~~~A~~~g~~v~~H~~e~~~~~~~~~~~~g~~~~~~l~~~g~l~~r~~~~H~~~l~~~~~~~la 271 (443)
T PRK09045 197 -----YTVSDENLERIRTLAEQLDLPIHIHLHETAQEIADSLKQHGQRPLARLARLGLLGPRLIAVHMTQLTDAEIALLA 271 (443)
T ss_pred -----CCCCHHHHHHHHHHHHHcCCCEEEeecCcHHHHHHHHHHhCCCHHHHHHHcCCCCCCeEEEEecCCCHHHHHHHH
Confidence 23789999999999999999999999743 3344444432 1234556777889999999999999999999
Q ss_pred hCCcEEEecccccccchhHHHHhhChhhhhhhhhhHHHHHHCCCeeeecCCCCCC--CCCHHHHHHHHHcccCCCCCCCC
Q 008063 431 DQGIVASMQPQHLLDDADSARKKLGVDRAERESYLFQSLLANNALLALGSDWPVA--DINPLCAIRTAMKRIPPGWDNAW 508 (579)
Q Consensus 431 ~~~i~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 508 (579)
+.|+.+++||.++. .++ ....+++.+.+.|+++++|||++.+ ..+++.+++.+...... ..
T Consensus 272 ~~g~~i~~~P~~~~--------~~~-----~~~~~~~~l~~~Gv~v~lGtD~~~~~~~~~~~~~~~~a~~~~~~----~~ 334 (443)
T PRK09045 272 ETGCSVVHCPESNL--------KLA-----SGFCPVAKLLQAGVNVALGTDGAASNNDLDLFGEMRTAALLAKA----VA 334 (443)
T ss_pred HcCCeEEECHHHHh--------hhc-----cCCCcHHHHHHCCCeEEEecCCCCCCCCccHHHHHHHHHHHHhh----cc
Confidence 99999999998754 122 4456899999999999999998753 36888888876421110 01
Q ss_pred CCCCCCCHHHHHHHHcHHHHHhcccCCccccccCCCcccEEEeCCCCCC-Ch-----hhc----cCCeEEEEEECCEEeC
Q 008063 509 IPSERISLTDALIAHTLSAARACFLENDVGSLSPGKIADFVILSTSSWE-DF-----AAE----VSASIEATYVSGVQAY 578 (579)
Q Consensus 509 ~~~~~ls~~~al~~~T~npA~~lgl~~~~G~I~~G~~ADlvvld~~~~~-~~-----~~~----~~~~v~~v~v~G~~v~ 578 (579)
....+++++++|+++|.|||+.+|+++++|+|++||.|||||+|.++++ .+ .++ ...+|..||++|++||
T Consensus 335 ~~~~~~~~~~al~~~T~~~A~~lg~~~~~G~i~~G~~ADlvv~d~~~~~~~p~~~~~~~lv~~~~~~~v~~v~v~G~~v~ 414 (443)
T PRK09045 335 GDATALPAHTALRMATLNGARALGLDDEIGSLEPGKQADLVAVDLSGLETQPVYDPVSQLVYAAGREQVSHVWVAGKQLL 414 (443)
T ss_pred CCCCcCCHHHHHHHHhHHHHHHcCCCCCCcccCCCCcCCEEEEeCCCCCcCCccChHhHhhEeCCCCCccEEEECCEEEE
Confidence 1235699999999999999999999988999999999999999999764 11 222 2568999999999997
Q ss_pred C
Q 008063 579 P 579 (579)
Q Consensus 579 ~ 579 (579)
.
T Consensus 415 ~ 415 (443)
T PRK09045 415 D 415 (443)
T ss_pred E
Confidence 3
|
|
| >PRK15493 5-methylthioadenosine/S-adenosylhomocysteine deaminase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-37 Score=323.25 Aligned_cols=378 Identities=18% Similarity=0.239 Sum_probs=254.9
Q ss_pred ccEEEEcCeEEeCCCC--CCeeeEEEEECCEEEEecChHHHHhhccCCCeEEeCCCCeeecccccccccccccCcccccc
Q 008063 45 ADLVVTNGVIFTGDDS--LLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHFIPGGLQMARV 122 (579)
Q Consensus 45 ~~~likn~~v~~~~~~--~~~~~~v~I~~GkI~~Ig~~~~~~~~~~~~~~viD~~g~~V~PG~ID~H~H~~~~~~~~~~~ 122 (579)
|+++|+|++|++++.. ...+++|+|+||+|++|++...... +++.++||++|++|+|||||+|+|+++....
T Consensus 1 ~~~li~~~~v~t~~~~~~~~~~g~V~i~~g~I~~vg~~~~~~~--~~~~~viD~~g~~i~PGlVn~H~H~~~~~~r---- 74 (435)
T PRK15493 1 MKTTYVNATIVTMNEQNEVIENGYIIVENDQIIDVNSGEFASD--FEVDEVIDMKGKWVLPGLVNTHTHVVMSLLR---- 74 (435)
T ss_pred CeEEEEccEEEEeCCCCcEecCcEEEEECCEEEEEcCcccccc--CCCCeEEeCCCCEEccceeecccCccchhhh----
Confidence 5689999999997643 3467899999999999998532211 2457899999999999999999998765321
Q ss_pred ccCCCCCHHHHHHHHHHHHHcCCCCCeEEEeCCCCCCCCCCCCChHHhhh-hCCCCeEEEEeCCCchhhhcHHHHHHcCC
Q 008063 123 KLRGVSHKDEFVRRVKEAVKNSKKGSWILGGGWNNDLWGGDLPMASWIDD-ITPHNPVWLSRMDGHMGLANSVALQLVGI 201 (579)
Q Consensus 123 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~p~~~~ld~-~~~~~p~~~~~~~~~~~~~n~~~~~~~g~ 201 (579)
|.. ++.+...|+.. +.|
T Consensus 75 ---g~~---------------------------------~~~~l~~wl~~~~~~-------------------------- 92 (435)
T PRK15493 75 ---GIG---------------------------------DDMLLQPWLETRIWP-------------------------- 92 (435)
T ss_pred ---ccC---------------------------------CCCCHHHHHHhchhh--------------------------
Confidence 110 01222333322 100
Q ss_pred CCCCCCCCCCeEEeCCCCCcCEEEhHhHHHHhcccCCCCCHHHHHHHHHHHHHHHHhcCccEEEeCCcCCCCCccccchH
Q 008063 202 TNLSEDPNGGTIMKTSSGEPTGLLIDAAMKLILPWIPEVSVDERREALLRASNLALSRGVTTVVDFGRYYPGESVQLSWE 281 (579)
Q Consensus 202 ~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Git~v~~~~~~~~~~~~~~~~~ 281 (579)
.....++++.+...+.+..+++++|+|++.|+....+ .
T Consensus 93 ----------------------------------~~~~~~~e~~~~~a~~~~~e~l~~G~Ttv~d~~~~~~-~------- 130 (435)
T PRK15493 93 ----------------------------------LESQFTPELAVASTELGLLEMVKSGTTSFSDMFNPIG-V------- 130 (435)
T ss_pred ----------------------------------chhcCCHHHHHHHHHHHHHHHHhCCccEEEccccccc-c-------
Confidence 0012456788888899999999999999999742110 0
Q ss_pred HHHHHHHHHhhcCCCeeEEEEccCccc------hh----hHHHHHHhcCCCCCCceEEceEEEEEcCccCCCcccccCCC
Q 008063 282 DFADVYQWASYSEKMKIRVCLFFPLET------WS----SLADLINKTGHVLSDWVYLGGVKAFADGSLGSNSALFHEPY 351 (579)
Q Consensus 282 ~~~~~~~~~~~~~~~~i~v~~~~~~~~------~~----~~~~~~~~~~~~~~~~~~~~g~k~~~dg~~~~~~~~~~~~~ 351 (579)
....+.+.+. +.++|.+....... .. +...++..... ..+. ++.. ...+.|+
T Consensus 131 ~~~~~~~a~~---~~GiR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-----i~~~---------~~~~~~~ 192 (435)
T PRK15493 131 DQDAIMETVS---RSGMRAAVSRTLFSFGTKEDEKKAIEEAEKYVKRYYN-ESGM-----LTTM---------VAPHSPY 192 (435)
T ss_pred CHHHHHHHHH---HcCCcEEEeeeecCCCCCccHHHHHHHHHHHHHHhcC-CCCC-----eEEE---------EeCCCCC
Confidence 0112222222 24566544221111 11 11111111000 0011 1111 1123333
Q ss_pred CCCCCCCcccCCCHHHHHHHHHHHHHCCCeEEEEecch-HHHHHHHHHH----HHHHHhcCCCCCCceEeeccCCChhhH
Q 008063 352 ADEPHNYGLQVMELESLLSMTMASDKSGLQVAIHAIGD-RANDLVLDMY----KSVVVTTGKRDQRFRIEHAQHLASGTA 426 (579)
Q Consensus 352 ~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~i~iH~~g~-~~~~~~~~~~----~~~~~~~~~~~~~~~i~H~~~~~~~~~ 426 (579)
.++++.++++.+.|+++|+++++|+.+. .+.+...+.+ .+.....|..+.+..+.||.+++++++
T Consensus 193 ----------t~s~e~l~~~~~~A~~~g~~v~~H~~e~~~e~~~~~~~~g~~~~~~l~~~Gll~~~~~~~H~~~l~~~d~ 262 (435)
T PRK15493 193 ----------TCSTELLEECARIAVENQTMVHIHLSETEREVRDIEAQYGKRPVEYAASCGLFKRPTVIAHGVVLNDNER 262 (435)
T ss_pred ----------cCCHHHHHHHHHHHHHcCCcEEEEeCCCHHHHHHHHHHhCCCHHHHHHHcCCCCCCcEEEEeecCCHHHH
Confidence 3789999999999999999999999865 3333333332 234455678888999999999999999
Q ss_pred HHHhhCCcEEEecccccccchhHHHHhhChhhhhhhhhhHHHHHHCCCeeeecCCCCCC--CCCHHHHHHHHHcccCCCC
Q 008063 427 ARFGDQGIVASMQPQHLLDDADSARKKLGVDRAERESYLFQSLLANNALLALGSDWPVA--DINPLCAIRTAMKRIPPGW 504 (579)
Q Consensus 427 ~~~~~~~i~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD~~~~--~~~~~~~~~~~~~~~~~~~ 504 (579)
+++++.|+.+++||.++. .++ ...+|++.+.++|+++++|||+..+ +.+++.+|+.++.....
T Consensus 263 ~~la~~g~~v~~~P~sn~--------~l~-----~g~~p~~~~~~~Gv~v~lGtD~~~~~~~~d~~~~~~~a~~~~~~-- 327 (435)
T PRK15493 263 AFLAEHDVRVAHNPNSNL--------KLG-----SGIANVKAMLEAGIKVGIATDSVASNNNLDMFEEMRIATLLQKG-- 327 (435)
T ss_pred HHHHHcCCeEEEChHHHH--------HHh-----cCcccHHHHHHCCCeEEEccCccccCCCcCHHHHHHHHHHHHhh--
Confidence 999999999999999875 233 5566999999999999999997543 47899999876543210
Q ss_pred CCCCCCCCCCCHHHHHHHHcHHHHHhcccCCccccccCCCcccEEEeCCC-CC-----C-Chhhcc----CCeEEEEEEC
Q 008063 505 DNAWIPSERISLTDALIAHTLSAARACFLENDVGSLSPGKIADFVILSTS-SW-----E-DFAAEV----SASIEATYVS 573 (579)
Q Consensus 505 ~~~~~~~~~ls~~~al~~~T~npA~~lgl~~~~G~I~~G~~ADlvvld~~-~~-----~-~~~~~~----~~~v~~v~v~ 573 (579)
.......++++++++++|.+||+.+|+++ +|+|++||.||||++|.+ .. . .+.++. ...|.+|||+
T Consensus 328 --~~~~~~~~~~~~~l~~aT~~gA~~lg~~~-~G~l~~G~~ADlvv~d~~~~~~~~p~~d~~~~lv~~~~~~~V~~v~V~ 404 (435)
T PRK15493 328 --IHQDATALPVETALTLATKGAAEVIGMKQ-TGSLEVGKCADFITIDPSNKPHLQPADEVLSHLVYAASGKDISDVIIN 404 (435)
T ss_pred --ccCCCCcCCHHHHHHHHhHHHHHHcCCCC-CCccCCCCcCCEEEEcCCCCCCcCCccChHHhEEEeCCCCCccEEEEC
Confidence 01123469999999999999999999975 899999999999999963 21 1 122222 4579999999
Q ss_pred CEEeC
Q 008063 574 GVQAY 578 (579)
Q Consensus 574 G~~v~ 578 (579)
||+|+
T Consensus 405 G~~v~ 409 (435)
T PRK15493 405 GKRVV 409 (435)
T ss_pred CEEEE
Confidence 99886
|
|
| >PRK07228 N-ethylammeline chlorohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=323.93 Aligned_cols=377 Identities=22% Similarity=0.299 Sum_probs=249.4
Q ss_pred ccEEEEcCeEEeCCCC-CCeeeEEEEECCEEEEecChHHHHhhccCCCeEEeCCCCeeecccccccccccccCccccccc
Q 008063 45 ADLVVTNGVIFTGDDS-LLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHFIPGGLQMARVK 123 (579)
Q Consensus 45 ~~~likn~~v~~~~~~-~~~~~~v~I~~GkI~~Ig~~~~~~~~~~~~~~viD~~g~~V~PG~ID~H~H~~~~~~~~~~~~ 123 (579)
|+++|+|++|+++++. ...+++|+|+||+|++|++..+.. .+.++||+.|++|+|||||+|+|+.+....
T Consensus 1 ~~~~i~~~~vi~~~~~~~~~~g~V~I~dg~I~~vg~~~~~~----~~~~vID~~G~~vlPGlId~H~H~~~~~~~----- 71 (445)
T PRK07228 1 MTILIKNAGIVTMNAKREIVDGDVLIEDDRIAAVGDRLDLE----DYDDHIDATGKVVIPGLIQGHIHLCQTLFR----- 71 (445)
T ss_pred CeEEEEccEEEecCCCcEecccEEEEECCEEEEecCCcccC----cCCeEEeCCCCEEecCEEecccCCccccce-----
Confidence 5699999999998653 347889999999999999864321 357899999999999999999998654210
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCCCCeEEEeCCCCCCCCCCCCChHHhhhhCCCCeEEEEeCCCchhhhcHHHHHHcCCCC
Q 008063 124 LRGVSHKDEFVRRVKEAVKNSKKGSWILGGGWNNDLWGGDLPMASWIDDITPHNPVWLSRMDGHMGLANSVALQLVGITN 203 (579)
Q Consensus 124 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~p~~~~ld~~~~~~p~~~~~~~~~~~~~n~~~~~~~g~~~ 203 (579)
+... ..+...|+...
T Consensus 72 --g~~~---------------------------------~~~~~~~~~~~------------------------------ 86 (445)
T PRK07228 72 --GIAD---------------------------------DLELLDWLKDR------------------------------ 86 (445)
T ss_pred --eccC---------------------------------CCCHHHHHHhh------------------------------
Confidence 0000 00111121110
Q ss_pred CCCCCCCCeEEeCCCCCcCEEEhHhHHHHhcccCCCCCHHHHHHHHHHHHHHHHhcCccEEEeCCcCCCCCccccchHHH
Q 008063 204 LSEDPNGGTIMKTSSGEPTGLLIDAAMKLILPWIPEVSVDERREALLRASNLALSRGVTTVVDFGRYYPGESVQLSWEDF 283 (579)
Q Consensus 204 ~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Git~v~~~~~~~~~~~~~~~~~~~ 283 (579)
........++++.....+....+++.+|+|++.++++... .
T Consensus 87 -----------------------------~~~~~~~~~~~~~~~~a~~~~~e~L~~GvTtv~d~~~~~~----------~ 127 (445)
T PRK07228 87 -----------------------------IWPLEAAHDAESMYYSALLGIGELIESGTTTIVDMESVHH----------T 127 (445)
T ss_pred -----------------------------hhhhhhhCCHHHHHHHHHHHHHHHHhcCceEEEccccccC----------h
Confidence 0001123455777888888999999999999999863210 0
Q ss_pred HHHHHHHhhcCCCeeEEEEccCccc----------------hhhHHHHHHhcCCCCCCceEEceEEEEEcCccCCCcccc
Q 008063 284 ADVYQWASYSEKMKIRVCLFFPLET----------------WSSLADLINKTGHVLSDWVYLGGVKAFADGSLGSNSALF 347 (579)
Q Consensus 284 ~~~~~~~~~~~~~~i~v~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~g~k~~~dg~~~~~~~~~ 347 (579)
....+.+.+. ++|......... ..+..+.++....... +.+.. .+
T Consensus 128 ~~~~~a~~~~---g~r~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~i~~~~g~~~-----~~~~~-----------~~ 188 (445)
T PRK07228 128 DSAFEAAGES---GIRAVLGKVMMDYGDDVPEGLQEDTEASLAESVRLLEKWHGADN-----GRIRY-----------AF 188 (445)
T ss_pred HHHHHHHHHc---CCeEEEecceecCCcCCCccccccHHHHHHHHHHHHHHhcCCCC-----CceEE-----------EE
Confidence 1223333332 334333111000 0111111111000000 00000 00
Q ss_pred cCCCCCCCCCCcccCCCHHHHHHHHHHHHHCCCeEEEEecchHH-HHHHHHHHH----HHHHhcCCCCCCceEeeccCCC
Q 008063 348 HEPYADEPHNYGLQVMELESLLSMTMASDKSGLQVAIHAIGDRA-NDLVLDMYK----SVVVTTGKRDQRFRIEHAQHLA 422 (579)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~i~iH~~g~~~-~~~~~~~~~----~~~~~~~~~~~~~~i~H~~~~~ 422 (579)
.|. ....++++.++++++.|+++|+++++|+.++.. .+.+.+... +.....+..+.+..+.|+.+++
T Consensus 189 -~~~-------~~~~~~~~~l~~~~~~a~~~g~~v~~H~~e~~~~~~~~~~~~g~~~~~~l~~~g~~~~~~~l~H~~~~~ 260 (445)
T PRK07228 189 -TPR-------FAVSCTEELLRGVRDLADEYGVRIHTHASENRGEIETVEEETGMRNIHYLDEVGLTGEDLILAHCVWLD 260 (445)
T ss_pred -eCC-------CCCCCCHHHHHHHHHHHHHcCCcEEEEeCCCHHHHHHHHHHhCCCHHHHHHHCCCCCCCcEEEEEecCC
Confidence 010 112367899999999999999999999986543 222222211 2234456778899999999999
Q ss_pred hhhHHHHhhCCcEEEecccccccchhHHHHhhChhhhhhhhhhHHHHHHCCCeeeecCCCCCC--CCCHHHHHHHHHccc
Q 008063 423 SGTAARFGDQGIVASMQPQHLLDDADSARKKLGVDRAERESYLFQSLLANNALLALGSDWPVA--DINPLCAIRTAMKRI 500 (579)
Q Consensus 423 ~~~~~~~~~~~i~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD~~~~--~~~~~~~~~~~~~~~ 500 (579)
+++++++++.|+.+++||.++.. ++ ....|++.+++.|+++++|||++.. ..++|..++.++...
T Consensus 261 ~~~~~~~~~~g~~v~~~P~~~~~--------~~-----~~~~p~~~~~~~Gv~v~lGtD~~~~~~~~~~~~~~~~~~~~~ 327 (445)
T PRK07228 261 EEEREILAETGTHVTHCPSSNLK--------LA-----SGIAPVPDLLERGINVALGADGAPCNNTLDPFTEMRQAALIQ 327 (445)
T ss_pred HHHHHHHHHcCCeEEEChHHhhh--------cc-----cccCcHHHHHHCCCeEEEcCCCCccCCCccHHHHHHHHHHHh
Confidence 99999999999999999987642 22 4566999999999999999997643 367888887765422
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHcHHHHHhcccCCccccccCCCcccEEEeCCCCCC-Ch-h------h----ccCCeEE
Q 008063 501 PPGWDNAWIPSERISLTDALIAHTLSAARACFLENDVGSLSPGKIADFVILSTSSWE-DF-A------A----EVSASIE 568 (579)
Q Consensus 501 ~~~~~~~~~~~~~ls~~~al~~~T~npA~~lgl~~~~G~I~~G~~ADlvvld~~~~~-~~-~------~----~~~~~v~ 568 (579)
... ......++++++|+++|.|||+.+|+++.+|+|++||.|||||+|.+++. .+ . . ....+|.
T Consensus 328 ~~~----~~~~~~~s~~~al~~~T~~~A~~lg~~~~~G~l~~G~~ADlvvld~~~~~~~p~~~~~~~~~~~~~~~~~~v~ 403 (445)
T PRK07228 328 KVD----RLGPTAMPARTVFEMATLGGAKAAGFEDEIGSLEEGKKADLAILDLDGLHATPSHGVDVLSHLVYAAHGSDVE 403 (445)
T ss_pred hhc----cCCCcccCHHHHHHHHHHHHHHHhCCCCCccccCCCCccCEEEEcCCCcccCCCcccCHHHHhheeCCCCCee
Confidence 100 01124689999999999999999999888999999999999999998653 11 1 1 2256899
Q ss_pred EEEECCEEeC
Q 008063 569 ATYVSGVQAY 578 (579)
Q Consensus 569 ~v~v~G~~v~ 578 (579)
.||++|++||
T Consensus 404 ~v~v~G~~v~ 413 (445)
T PRK07228 404 TTMVDGKIVM 413 (445)
T ss_pred EEEECCEEEE
Confidence 9999999986
|
|
| >PRK08204 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-37 Score=325.63 Aligned_cols=380 Identities=20% Similarity=0.243 Sum_probs=249.5
Q ss_pred ccEEEEcCeEEeCCC--CCCeeeEEEEECCEEEEecChHHHHhhccCCCeEEeCCCCeeecccccccccccccCcccccc
Q 008063 45 ADLVVTNGVIFTGDD--SLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHFIPGGLQMARV 122 (579)
Q Consensus 45 ~~~likn~~v~~~~~--~~~~~~~v~I~~GkI~~Ig~~~~~~~~~~~~~~viD~~g~~V~PG~ID~H~H~~~~~~~~~~~ 122 (579)
.+++|+|++|+++++ ....+++|+|+||||++|++..+ .++.++||++|++|+|||||+|+|+.+....
T Consensus 2 ~~~li~~~~v~~~~~~~~~~~~~~v~V~~g~I~~Vg~~~~-----~~~~~viD~~g~~v~PGlId~H~H~~~~~~~---- 72 (449)
T PRK08204 2 KRTLIRGGTVLTMDPAIGDLPRGDILIEGDRIAAVAPSIE-----APDAEVVDARGMIVMPGLVDTHRHTWQSVLR---- 72 (449)
T ss_pred CcEEEECcEEEecCCCCCccccceEEEECCEEEEecCCCC-----CCCCeEEeCCCCEEecCEEeeeeccchhhhc----
Confidence 458899999998765 33467899999999999998643 1356899999999999999999998554221
Q ss_pred ccCCCCCHHHHHHHHHHHHHcCCCCCeEEEeCCCCCCCCCCCCChHHhhhhCCCCeEEEEeCCCchhhhcHHHHHHcCCC
Q 008063 123 KLRGVSHKDEFVRRVKEAVKNSKKGSWILGGGWNNDLWGGDLPMASWIDDITPHNPVWLSRMDGHMGLANSVALQLVGIT 202 (579)
Q Consensus 123 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~p~~~~ld~~~~~~p~~~~~~~~~~~~~n~~~~~~~g~~ 202 (579)
+.. .+.+..+|+....
T Consensus 73 ---~~~---------------------------------~~~~~~~~~~~~~---------------------------- 88 (449)
T PRK08204 73 ---GIG---------------------------------ADWTLQTYFREIH---------------------------- 88 (449)
T ss_pred ---ccc---------------------------------CCCcHHHHHHhhc----------------------------
Confidence 000 0011112221100
Q ss_pred CCCCCCCCCeEEeCCCCCcCEEEhHhHHHHhcccCCCCCHHHHHHHHHHHHHHHHhcCccEEEeCCcCCCCCccccchHH
Q 008063 203 NLSEDPNGGTIMKTSSGEPTGLLIDAAMKLILPWIPEVSVDERREALLRASNLALSRGVTTVVDFGRYYPGESVQLSWED 282 (579)
Q Consensus 203 ~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Git~v~~~~~~~~~~~~~~~~~~ 282 (579)
....+..++++...........++++|+|++.+++....+. ..
T Consensus 89 -------------------------------~~~~~~~~~~~~~~~a~~~~~~~L~~GvTtv~d~~~~~~~~------~~ 131 (449)
T PRK08204 89 -------------------------------GNLGPMFRPEDVYIANLLGALEALDAGVTTLLDWSHINNSP------EH 131 (449)
T ss_pred -------------------------------ccccccCCHHHHHHHHHHHHHHHHhcCCeEEeecccccCCh------hH
Confidence 00112345566777777788899999999999976432110 11
Q ss_pred HHHHHHHHhhcCCCeeEEEEccCccc-------------hhhHHHHHHhcCCCCCCceEEceEEEEEcCccCCCcccccC
Q 008063 283 FADVYQWASYSEKMKIRVCLFFPLET-------------WSSLADLINKTGHVLSDWVYLGGVKAFADGSLGSNSALFHE 349 (579)
Q Consensus 283 ~~~~~~~~~~~~~~~i~v~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~g~k~~~dg~~~~~~~~~~~ 349 (579)
.....+.+. ..++|......... ........+.........+. . .....
T Consensus 132 ~~~~~~~~~---~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~---------~~~~~- 193 (449)
T PRK08204 132 ADAAIRGLA---EAGIRAVFAHGSPGPSPYWPFDSVPHPREDIRRVKKRYFSSDDGLLT-----L---------GLAIR- 193 (449)
T ss_pred HHHHHHHHH---HcCCeEEEEccccCCCCCCCcchhhhhHHHHHHHHHhhccCCCCceE-----E---------EEecC-
Confidence 122333332 33445443211110 01111111110000000000 0 00011
Q ss_pred CCCCCCCCCcccCCCHHHHHHHHHHHHHCCCeEEEEecchHH--HHHHHHHHHHHHHhcCCCCCCceEeeccCCChhhHH
Q 008063 350 PYADEPHNYGLQVMELESLLSMTMASDKSGLQVAIHAIGDRA--NDLVLDMYKSVVVTTGKRDQRFRIEHAQHLASGTAA 427 (579)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~i~iH~~g~~~--~~~~~~~~~~~~~~~~~~~~~~~i~H~~~~~~~~~~ 427 (579)
+....+++.++++++.|++.|+++.+|+.+... ....++. ....+..+.++.+.|+.++++++++
T Consensus 194 ---------~~~~~~~e~l~~~~~~A~~~g~~v~~H~~e~~~~~~~~~~~~----l~~~g~~~~~~~i~H~~~~~~~~~~ 260 (449)
T PRK08204 194 ---------GPEFSSWEVARADFRLARELGLPISMHQGFGPWGATPRGVEQ----LHDAGLLGPDLNLVHGNDLSDDELK 260 (449)
T ss_pred ---------CcccCCHHHHHHHHHHHHHcCCcEEEEEcCCCcccCCCHHHH----HHHCCCCCCCeEEEecCCCCHHHHH
Confidence 112257899999999999999999999964421 1112222 2335667789999999999999999
Q ss_pred HHhhCCcEEEecccccccchhHHHHhhChhhhhhhhhhHHHHHHCCCeeeecCCCCC-CCCCHHHHHHHHHcccCC--CC
Q 008063 428 RFGDQGIVASMQPQHLLDDADSARKKLGVDRAERESYLFQSLLANNALLALGSDWPV-ADINPLCAIRTAMKRIPP--GW 504 (579)
Q Consensus 428 ~~~~~~i~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD~~~-~~~~~~~~~~~~~~~~~~--~~ 504 (579)
++++.|+.+++||.++. .++ ...+|++.+.++|+++++|||.+. .+.+++.+++.++..... ..
T Consensus 261 ~la~~g~~v~~~P~~~~--------~~g-----~~~~~~~~~~~~Gv~v~lGtD~~~~~~~~~~~~~~~a~~~~~~~~~~ 327 (449)
T PRK08204 261 LLADSGGSFSVTPEIEM--------MMG-----HGYPVTGRLLAHGVRPSLGVDVVTSTGGDMFTQMRFALQAERARDNA 327 (449)
T ss_pred HHHHcCCCEEEChHHHh--------hhc-----CCCCcHHHHHhcCCceeeccccCCCCCcCHHHHHHHHHHHHHhhccc
Confidence 99999999999998753 223 446689999999999999999753 458999999887753211 00
Q ss_pred -----CCCCCCCCCCCHHHHHHHHcHHHHHhcccCCccccccCCCcccEEEeCCCCCC-----C-hhhc----cCCeEEE
Q 008063 505 -----DNAWIPSERISLTDALIAHTLSAARACFLENDVGSLSPGKIADFVILSTSSWE-----D-FAAE----VSASIEA 569 (579)
Q Consensus 505 -----~~~~~~~~~ls~~~al~~~T~npA~~lgl~~~~G~I~~G~~ADlvvld~~~~~-----~-~~~~----~~~~v~~ 569 (579)
...+..+.+++++++|+++|.|+|+.+|+++.+|+|++||.|||||+|.++++ + ..++ ...+|..
T Consensus 328 ~~~~~~~~~~~~~~~~~~~al~~~T~~gA~~lg~~~~~G~le~Gk~ADlvvld~~~~~~~p~~dp~~~lv~~~~~~~v~~ 407 (449)
T PRK08204 328 VHLREGGMPPPRLTLTARQVLEWATIEGARALGLEDRIGSLTPGKQADLVLIDATDLNLAPVHDPVGAVVQSAHPGNVDS 407 (449)
T ss_pred ccccccccCCCcCCCCHHHHHHHHhHHHHHHcCCCCCCcccCCCCcCCEEEEcCCCccccCCcChhhhheeccCCCCceE
Confidence 00123456899999999999999999999988999999999999999998543 1 2222 2469999
Q ss_pred EEECCEEeC
Q 008063 570 TYVSGVQAY 578 (579)
Q Consensus 570 v~v~G~~v~ 578 (579)
||++|++|+
T Consensus 408 v~v~G~~v~ 416 (449)
T PRK08204 408 VMVAGRAVK 416 (449)
T ss_pred EEECCEEEE
Confidence 999999986
|
|
| >cd01298 ATZ_TRZ_like TRZ/ATZ family contains enzymes from the atrazine degradation pathway and related hydrolases | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-36 Score=315.36 Aligned_cols=375 Identities=21% Similarity=0.287 Sum_probs=246.3
Q ss_pred EEEEcCeEEeCCCC-CCeeeEEEEECCEEEEecChHHHHhhccCCCeEEeCCCCeeecccccccccccccCccccccccC
Q 008063 47 LVVTNGVIFTGDDS-LLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHFIPGGLQMARVKLR 125 (579)
Q Consensus 47 ~likn~~v~~~~~~-~~~~~~v~I~~GkI~~Ig~~~~~~~~~~~~~~viD~~g~~V~PG~ID~H~H~~~~~~~~~~~~~~ 125 (579)
++|+|++|+++++. ...+++|+|+||||++|++..+.+. +++.++||++|++|+|||||+|+|+........ .
T Consensus 1 ~~i~~~~v~~~~~~~~~~~~~v~i~~g~I~~ig~~~~~~~--~~~~~viD~~g~~i~PGlid~H~Hl~~~~~~~~----~ 74 (411)
T cd01298 1 ILIRNGTIVTTDPRRVLEDGDVLVEDGRIVAVGPALPLPA--YPADEVIDAKGKVVMPGLVNTHTHLAMTLLRGL----A 74 (411)
T ss_pred CeEEeeEEEEeCCcceeecceEEEECCEEEEecCcccccc--CCcCeEEeCCCCEEccCccccccchhhHHhhcc----c
Confidence 47999999998543 3467799999999999998644221 246789999999999999999999865321000 0
Q ss_pred CCCCHHHHHHHHHHHHHcCCCCCeEEEeCCCCCCCCCCCCChHHhhhhCCCCeEEEEeCCCchhhhcHHHHHHcCCCCCC
Q 008063 126 GVSHKDEFVRRVKEAVKNSKKGSWILGGGWNNDLWGGDLPMASWIDDITPHNPVWLSRMDGHMGLANSVALQLVGITNLS 205 (579)
Q Consensus 126 ~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~p~~~~ld~~~~~~p~~~~~~~~~~~~~n~~~~~~~g~~~~~ 205 (579)
...+ +. +|+...
T Consensus 75 ~~~~---~~---------------------------------~~l~~~-------------------------------- 86 (411)
T cd01298 75 DDLP---LM---------------------------------EWLKDL-------------------------------- 86 (411)
T ss_pred CCCC---HH---------------------------------HHHHhh--------------------------------
Confidence 0000 11 111110
Q ss_pred CCCCCCeEEeCCCCCcCEEEhHhHHHHhcccCCCCCHHHHHHHHHHHHHHHHhcCccEEEeCCcCCCCCccccchHHHHH
Q 008063 206 EDPNGGTIMKTSSGEPTGLLIDAAMKLILPWIPEVSVDERREALLRASNLALSRGVTTVVDFGRYYPGESVQLSWEDFAD 285 (579)
Q Consensus 206 ~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Git~v~~~~~~~~~~~~~~~~~~~~~ 285 (579)
....-...+.++.......+...++++|+|++.+++...+ ..
T Consensus 87 ---------------------------~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~d~~~~~~-----------~~ 128 (411)
T cd01298 87 ---------------------------IWPLERLLTEEDVYLGALLALAEMIRSGTTTFADMYFFYP-----------DA 128 (411)
T ss_pred ---------------------------hhhhhhcCCHHHHHHHHHHHHHHHHhcCccEEECccccch-----------HH
Confidence 0000012345677777888899999999999999863210 12
Q ss_pred HHHHHhhcCCCeeEEEEccCccch------------hhHHHHHHhcCCCCCCceEEceEEEEEcCccCCCcccccCCCCC
Q 008063 286 VYQWASYSEKMKIRVCLFFPLETW------------SSLADLINKTGHVLSDWVYLGGVKAFADGSLGSNSALFHEPYAD 353 (579)
Q Consensus 286 ~~~~~~~~~~~~i~v~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~g~k~~~dg~~~~~~~~~~~~~~~ 353 (579)
..+...+ .++++......... ++..+......... ...+|+... ...+
T Consensus 129 ~~~~~~~---~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~k~~~~---------~~~~--- 188 (411)
T cd01298 129 VAEAAEE---LGIRAVLGRGIMDLGTEDVEETEEALAEAERLIREWHGAA-----DGRIRVALA---------PHAP--- 188 (411)
T ss_pred HHHHHHH---hCCeEEEEcceecCCCcccccHHHHHHHHHHHHHHhcCCC-----CCceEEEEe---------CCCC---
Confidence 2222222 23444332211111 11111111100000 112333221 1111
Q ss_pred CCCCCcccCCCHHHHHHHHHHHHHCCCeEEEEecchH-HHHHHHHHHH----HHHHhcCCCCCCceEeeccCCChhhHHH
Q 008063 354 EPHNYGLQVMELESLLSMTMASDKSGLQVAIHAIGDR-ANDLVLDMYK----SVVVTTGKRDQRFRIEHAQHLASGTAAR 428 (579)
Q Consensus 354 ~~~~~~~~~~~~~~l~~~~~~a~~~g~~i~iH~~g~~-~~~~~~~~~~----~~~~~~~~~~~~~~i~H~~~~~~~~~~~ 428 (579)
..++++.+.++++.|+++|+++.+|+.++. ..+...+.+. +.....+..+.++.+.|+.+++++++++
T Consensus 189 -------~~~~~~~l~~~~~~A~~~g~~v~~H~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~H~~~l~~~~~~~ 261 (411)
T cd01298 189 -------YTCSDELLREVAELAREYGVPLHIHLAETEDEVEESLEKYGKRPVEYLEELGLLGPDVVLAHCVWLTDEEIEL 261 (411)
T ss_pred -------ccCCHHHHHHHHHHHHHcCCcEEEEecCCHHHHHHHHHHhCCCHHHHHHHcCCCCCCeEEEEecCCCHHHHHH
Confidence 126789999999999999999999997663 3333333221 1123455566788999999999999999
Q ss_pred HhhCCcEEEecccccccchhHHHHhhChhhhhhhhhhHHHHHHCCCeeeecCCCCCC--CCCHHHHHHHHHcccCCCCCC
Q 008063 429 FGDQGIVASMQPQHLLDDADSARKKLGVDRAERESYLFQSLLANNALLALGSDWPVA--DINPLCAIRTAMKRIPPGWDN 506 (579)
Q Consensus 429 ~~~~~i~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD~~~~--~~~~~~~~~~~~~~~~~~~~~ 506 (579)
+++.|+.+++||.++.. ++ ...++++.++++|+++++|||++.. ..+++.+++.++.....
T Consensus 262 l~~~gi~~~~~p~~~~~--------~~-----~~~~~~~~~~~~Gv~~~~GsD~~~~~~~~~~~~~~~~~~~~~~~---- 324 (411)
T cd01298 262 LAETGTGVAHNPASNMK--------LA-----SGIAPVPEMLEAGVNVGLGTDGAASNNNLDMFEEMRLAALLQKL---- 324 (411)
T ss_pred HHHcCCeEEEChHHhhh--------hh-----hCCCCHHHHHHCCCcEEEeCCCCccCCCcCHHHHHHHHHHHhcc----
Confidence 99999999999987541 22 3456899999999999999998754 46888888776533211
Q ss_pred CCCCCCCCCHHHHHHHHcHHHHHhcccCCccccccCCCcccEEEeCCCCCC--Chhhc--------cCCeEEEEEECCEE
Q 008063 507 AWIPSERISLTDALIAHTLSAARACFLENDVGSLSPGKIADFVILSTSSWE--DFAAE--------VSASIEATYVSGVQ 576 (579)
Q Consensus 507 ~~~~~~~ls~~~al~~~T~npA~~lgl~~~~G~I~~G~~ADlvvld~~~~~--~~~~~--------~~~~v~~v~v~G~~ 576 (579)
......+++++++|+++|.|||+.+|++ .+|+|++|+.|||||+|.+.+. +.+++ ...++..||++|++
T Consensus 325 ~~~~~~~~~~~~al~~~T~~~A~~lg~~-~~G~i~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~G~~ 403 (411)
T cd01298 325 AHGDPTALPAEEALEMATIGGAKALGLD-EIGSLEVGKKADLILIDLDGPHLLPVHDPISHLVYSANGGDVDTVIVNGRV 403 (411)
T ss_pred ccCCCCcCCHHHHHHHHHhhHHHHhCCc-cCCCcCCCccCCEEEEeCCCCccCCccchhhHheEecCCCCeeEEEECCEE
Confidence 0112346999999999999999999998 6899999999999999998543 21222 25699999999999
Q ss_pred eC
Q 008063 577 AY 578 (579)
Q Consensus 577 v~ 578 (579)
||
T Consensus 404 v~ 405 (411)
T cd01298 404 VM 405 (411)
T ss_pred EE
Confidence 86
|
Atrazine, a chlorinated herbizide, can be catabolized by a variety of different bacteria. The first three steps of the atrazine dehalogenation pathway are catalyzed by atrazine chlorohydrolase (AtzA), hydroxyatrazine ethylaminohydrolase (AtzB), and N-isopropylammelide N-isopropylaminohydrolase (AtzC). All three enzymes belong to the superfamily of metal dependent hydrolases. AtzA and AtzB, beside other related enzymes are represented in this CD. |
| >PRK06380 metal-dependent hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-35 Score=310.21 Aligned_cols=369 Identities=19% Similarity=0.248 Sum_probs=247.9
Q ss_pred ccEEEEcCeEEeCCCC-CCeeeEEEEECCEEEEecChHHHHhhccCCCeEEeCCCCeeecccccccccccccCccccccc
Q 008063 45 ADLVVTNGVIFTGDDS-LLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHFIPGGLQMARVK 123 (579)
Q Consensus 45 ~~~likn~~v~~~~~~-~~~~~~v~I~~GkI~~Ig~~~~~~~~~~~~~~viD~~g~~V~PG~ID~H~H~~~~~~~~~~~~ 123 (579)
|+++|+|++|+++++. ...+++|+|+||||++|++..+ ...++||++|++|+|||||+|+|+++...+
T Consensus 1 m~~li~~~~v~~~~~~~~~~~~~v~i~~g~I~~ig~~~~------~~~~viD~~g~~v~PG~Vd~H~Hl~~~~~r----- 69 (418)
T PRK06380 1 MSILIKNAWIVTQNEKREILQGNVYIEGNKIVYVGDVNE------EADYIIDATGKVVMPGLINTHAHVGMTASK----- 69 (418)
T ss_pred CeEEEEeeEEEECCCCceeeeeeEEEECCEEEEecCCCC------CCCEEEECCCCEEccCEEeeccCCCccccC-----
Confidence 5689999999998643 3467899999999999998532 345899999999999999999998765321
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCCCCeEEEeCCCCCCCCCCCCChHHhhhhCCCCeEEEEeCCCchhhhcHHHHHHcCCCC
Q 008063 124 LRGVSHKDEFVRRVKEAVKNSKKGSWILGGGWNNDLWGGDLPMASWIDDITPHNPVWLSRMDGHMGLANSVALQLVGITN 203 (579)
Q Consensus 124 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~p~~~~ld~~~~~~p~~~~~~~~~~~~~n~~~~~~~g~~~ 203 (579)
+.. +..+...|+....+
T Consensus 70 --g~~---------------------------------~~~~l~~~~~~~~~---------------------------- 86 (418)
T PRK06380 70 --GLF---------------------------------DDVDLEEFLMKTFK---------------------------- 86 (418)
T ss_pred --Ccc---------------------------------cCCCHHHHHHHHHh----------------------------
Confidence 110 01112233322110
Q ss_pred CCCCCCCCeEEeCCCCCcCEEEhHhHHHHhcccCCCCCHHHHHHHHHHHHHHHHhcCccEEEeCCcCCCCCccccchHHH
Q 008063 204 LSEDPNGGTIMKTSSGEPTGLLIDAAMKLILPWIPEVSVDERREALLRASNLALSRGVTTVVDFGRYYPGESVQLSWEDF 283 (579)
Q Consensus 204 ~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Git~v~~~~~~~~~~~~~~~~~~~ 283 (579)
.....++++++...+.++..++++|+|++.|+... .
T Consensus 87 --------------------------------~~~~~~~e~~~~~~~~~~~e~l~~G~Tt~~d~~~~---------~--- 122 (418)
T PRK06380 87 --------------------------------YDSKRTREGIYNSAKLGMYEMINSGITAFVDLYYS---------E--- 122 (418)
T ss_pred --------------------------------hhhcCCHHHHHHHHHHHHHHHHhcCCeEEEccccC---------h---
Confidence 01235668888888899999999999999987421 1
Q ss_pred HHHHHHHhhcCCCeeEEEEccCccc--h--------hhHHHHHHhcCCCCCCceEEceEEEEEcCccCCCcccccCCCCC
Q 008063 284 ADVYQWASYSEKMKIRVCLFFPLET--W--------SSLADLINKTGHVLSDWVYLGGVKAFADGSLGSNSALFHEPYAD 353 (579)
Q Consensus 284 ~~~~~~~~~~~~~~i~v~~~~~~~~--~--------~~~~~~~~~~~~~~~~~~~~~g~k~~~dg~~~~~~~~~~~~~~~ 353 (579)
....+.+ .+.++|.+......+ . ....++.+... .... ++...
T Consensus 123 ~~~~~a~---~~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-----v~~~~----------------- 175 (418)
T PRK06380 123 DIIAKAA---EELGIRAFLSWAVLDEEITTQKGDPLNNAENFIREHR--NEEL-----VTPSI----------------- 175 (418)
T ss_pred HHHHHHH---HHhCCeEEEecccccCCcccccchHHHHHHHHHHHhc--CCCC-----eEEEE-----------------
Confidence 1222222 334566655321111 0 01111111100 0011 11100
Q ss_pred CCCCCcccCCCHHHHHHHHHHHHHCCCeEEEEecchH-HHHHHHHHH----HHHHHhcCCCCCCceEeeccCCChhhHHH
Q 008063 354 EPHNYGLQVMELESLLSMTMASDKSGLQVAIHAIGDR-ANDLVLDMY----KSVVVTTGKRDQRFRIEHAQHLASGTAAR 428 (579)
Q Consensus 354 ~~~~~~~~~~~~~~l~~~~~~a~~~g~~i~iH~~g~~-~~~~~~~~~----~~~~~~~~~~~~~~~i~H~~~~~~~~~~~ 428 (579)
++.+...++++.++++++.|+++|+++++|+.+.. ++....... -+.....+..+.+..+.|+.+++++++++
T Consensus 176 --~~~~~~~~s~e~l~~~~~~A~~~g~~v~~H~~e~~~~~~~~~~~~g~~~ie~~~~~g~l~~~~~~~H~~~l~~~d~~~ 253 (418)
T PRK06380 176 --GVQGIYVANDETYLKAKEIAEKYDTIMHMHLSETRKEVYDHVKRTGERPVEHLEKIGFLNSKLIAAHCVWATYHEIKL 253 (418)
T ss_pred --ECCCCccCCHHHHHHHHHHHHHcCCCEEEEeCCcHHHHHHHHHHhCCCHHHHHHHCCCCCCCeEEEEeecCCHHHHHH
Confidence 01123347899999999999999999999998653 332222211 12334456677899999999999999999
Q ss_pred HhhCCcEEEecccccccchhHHHHhhChhhhhhhhhhHHHHHHCCCeeeecCCCCCC--CCCHHHHHHHHHcccCCCCCC
Q 008063 429 FGDQGIVASMQPQHLLDDADSARKKLGVDRAERESYLFQSLLANNALLALGSDWPVA--DINPLCAIRTAMKRIPPGWDN 506 (579)
Q Consensus 429 ~~~~~i~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD~~~~--~~~~~~~~~~~~~~~~~~~~~ 506 (579)
+++.|+.+++||.++. .++. ...+|++.+++.|+++++|||+..+ ..+++.+++.++..... .
T Consensus 254 la~~g~~v~~~P~sn~--------~l~~----~g~~p~~~~~~~Gv~v~lGTD~~~~~~~~d~~~~~~~~~~~~~~---~ 318 (418)
T PRK06380 254 LSKNGVKVSWNSVSNF--------KLGT----GGSPPIPEMLDNGINVTIGTDSNGSNNSLDMFEAMKFSALSVKN---E 318 (418)
T ss_pred HHHcCCEEEECHHHHH--------hhcc----CCCCcHHHHHHCCCeEEEcCCCCcCCCCcCHHHHHHHHHHHhhh---c
Confidence 9999999999999864 2221 2466899999999999999997543 47888898876532110 0
Q ss_pred CCCCCCCCCHHHHHHHHcHHHHHhcccCCccccccCCCcccEEEeCCCCC-C-C------hhhcc----CCeEEEEEECC
Q 008063 507 AWIPSERISLTDALIAHTLSAARACFLENDVGSLSPGKIADFVILSTSSW-E-D------FAAEV----SASIEATYVSG 574 (579)
Q Consensus 507 ~~~~~~~ls~~~al~~~T~npA~~lgl~~~~G~I~~G~~ADlvvld~~~~-~-~------~~~~~----~~~v~~v~v~G 574 (579)
.+ ....++++++|+++|.|+|+.||++ .|+|++||.||||++|.+.. . + +.++. ..+|..||++|
T Consensus 319 ~~-~~~~~~~~~~l~~aT~~gA~~lg~~--~G~l~~G~~ADlvv~d~~~~~~~p~~~~~~~~~lv~~~~~~~v~~v~v~G 395 (418)
T PRK06380 319 RW-DASIIKAQEILDFATINAAKALELN--AGSIEVGKLADLVILDARAPNMIPTRKNNIVSNIVYSLNPLNVDHVIVNG 395 (418)
T ss_pred cC-CCCcCCHHHHHHHHHHHHHHHhCCC--CCccCCCccCCEEEEeCCCCccCCCCccChHHheeecCCCCceeEEEECC
Confidence 01 1124899999999999999999994 79999999999999998721 1 1 23322 45899999999
Q ss_pred EEeC
Q 008063 575 VQAY 578 (579)
Q Consensus 575 ~~v~ 578 (579)
++|+
T Consensus 396 ~~v~ 399 (418)
T PRK06380 396 KILK 399 (418)
T ss_pred EEEE
Confidence 9986
|
|
| >PRK06038 N-ethylammeline chlorohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-35 Score=310.62 Aligned_cols=372 Identities=21% Similarity=0.307 Sum_probs=250.3
Q ss_pred ccEEEEcCeEEeCCCCCCeeeEEEEECCEEEEecChHHHHhhccCCCeEEeCCCCeeecccccccccccccCcccccccc
Q 008063 45 ADLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHFIPGGLQMARVKL 124 (579)
Q Consensus 45 ~~~likn~~v~~~~~~~~~~~~v~I~~GkI~~Ig~~~~~~~~~~~~~~viD~~g~~V~PG~ID~H~H~~~~~~~~~~~~~ 124 (579)
++++|+|++|+++++....+++|+|+||+|++|++... ++..++||+.|++|+|||||+|+|+.+...
T Consensus 2 ~~~~~~~~~i~~~~~~~~~~~~v~v~~g~I~~i~~~~~-----~~~~~~id~~g~~v~PG~vd~H~H~~~~~~------- 69 (430)
T PRK06038 2 ADIIIKNAYVLTMDAGDLKKGSVVIEDGTITEVSESTP-----GDADTVIDAKGSVVMPGLVNTHTHAAMTLF------- 69 (430)
T ss_pred CCEEEEccEEEECCCCeeeccEEEEECCEEEEecCCCC-----CCCCEEEeCCCCEEecCeeecccCcchhhh-------
Confidence 35899999999886554466799999999999998522 234579999999999999999999865421
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCCCeEEEeCCCCCCCCCCCCChHHhhhhCCCCeEEEEeCCCchhhhcHHHHHHcCCCCC
Q 008063 125 RGVSHKDEFVRRVKEAVKNSKKGSWILGGGWNNDLWGGDLPMASWIDDITPHNPVWLSRMDGHMGLANSVALQLVGITNL 204 (579)
Q Consensus 125 ~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~p~~~~ld~~~~~~p~~~~~~~~~~~~~n~~~~~~~g~~~~ 204 (579)
++... ..+...|+....
T Consensus 70 ~g~~~---------------------------------~~~~~~~~~~~~------------------------------ 86 (430)
T PRK06038 70 RGYAD---------------------------------DLPLAEWLNDHI------------------------------ 86 (430)
T ss_pred hhccC---------------------------------CCCHHHHHHhhh------------------------------
Confidence 01000 112223332210
Q ss_pred CCCCCCCeEEeCCCCCcCEEEhHhHHHHhcccCCCCCHHHHHHHHHHHHHHHHhcCccEEEeCCcCCCCCccccchHHHH
Q 008063 205 SEDPNGGTIMKTSSGEPTGLLIDAAMKLILPWIPEVSVDERREALLRASNLALSRGVTTVVDFGRYYPGESVQLSWEDFA 284 (579)
Q Consensus 205 ~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Git~v~~~~~~~~~~~~~~~~~~~~ 284 (579)
.......++++.+...+....+++++|+|++.|.... ..
T Consensus 87 -----------------------------~~~~~~~~~~~~~~~a~~~~~e~l~~G~Ttv~D~~~~---------~~--- 125 (430)
T PRK06038 87 -----------------------------WPAEAKLTAEDVYAGSLLACLEMIKSGTTSFADMYFY---------MD--- 125 (430)
T ss_pred -----------------------------hhchhcCCHHHHHHHHHHHHHHHHhcCceeEEccccC---------HH---
Confidence 0001234557777777888999999999999997521 01
Q ss_pred HHHHHHhhcCCCeeEEEEccCccc------hh----hHHHHHHhcCCCCCCceEEceEEEEEcCccCCCcccccCCCCCC
Q 008063 285 DVYQWASYSEKMKIRVCLFFPLET------WS----SLADLINKTGHVLSDWVYLGGVKAFADGSLGSNSALFHEPYADE 354 (579)
Q Consensus 285 ~~~~~~~~~~~~~i~v~~~~~~~~------~~----~~~~~~~~~~~~~~~~~~~~g~k~~~dg~~~~~~~~~~~~~~~~ 354 (579)
...+... ..++|.+......+ .. ...++++....... ++++... .|
T Consensus 126 ~~~~a~~---~~GiR~~~~~~~~d~~~~~~~~~~l~~~~~~i~~~~~~~~-----g~v~~~~------------~~---- 181 (430)
T PRK06038 126 EVAKAVE---ESGLRAALSYGMIDLGDDEKGEAELKEGKRFVKEWHGAAD-----GRIKVMY------------GP---- 181 (430)
T ss_pred HHHHHHH---HhCCeEEEEchhccCCCccchHHHHHHHHHHHHHhcCCCC-----CceEEEE------------eC----
Confidence 1222222 23455543221101 11 11112111000000 0111100 01
Q ss_pred CCCCcccCCCHHHHHHHHHHHHHCCCeEEEEecchHHHHHHHHH-H----HHHHHhcCCCCCCceEeeccCCChhhHHHH
Q 008063 355 PHNYGLQVMELESLLSMTMASDKSGLQVAIHAIGDRANDLVLDM-Y----KSVVVTTGKRDQRFRIEHAQHLASGTAARF 429 (579)
Q Consensus 355 ~~~~~~~~~~~~~l~~~~~~a~~~g~~i~iH~~g~~~~~~~~~~-~----~~~~~~~~~~~~~~~i~H~~~~~~~~~~~~ 429 (579)
.....++++.++++++.|+++|+++++|+.++......+.. + .+.....+..+.+..+.|+.++++++++++
T Consensus 182 ---~~~~~~s~e~l~~~~~~A~~~g~~v~~H~~e~~~~~~~~~~~~G~~~i~~l~~~g~l~~r~~~~H~~~l~~~~~~~l 258 (430)
T PRK06038 182 ---HAPYTCSEEFLSKVKKLANKDGVGIHIHVLETEAELNQMKEQYGMCSVNYLDDIGFLGPDVLAAHCVWLSDGDIEIL 258 (430)
T ss_pred ---CcCccCCHHHHHHHHHHHHHcCCcEEEEcCCCHHHHHHHHHHhCCCHHHHHHHcCCCCCCeEEEEEecCCHHHHHHH
Confidence 11233789999999999999999999999977543332222 1 123456677888999999999999999999
Q ss_pred hhCCcEEEecccccccchhHHHHhhChhhhhhhhhhHHHHHHCCCeeeecCCCCCC--CCCHHHHHHHHHcccCCCCCCC
Q 008063 430 GDQGIVASMQPQHLLDDADSARKKLGVDRAERESYLFQSLLANNALLALGSDWPVA--DINPLCAIRTAMKRIPPGWDNA 507 (579)
Q Consensus 430 ~~~~i~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD~~~~--~~~~~~~~~~~~~~~~~~~~~~ 507 (579)
++.|+.+++||.++.. ++ ...+|++.+.++|+++++|||++.. ..+++.+|+.++.+....
T Consensus 259 a~~g~~v~~~P~~n~~--------~~-----~~~~p~~~~~~~Gv~v~lGtD~~~~~~~~d~~~~~~~a~~~~~~~---- 321 (430)
T PRK06038 259 RERGVNVSHNPVSNMK--------LA-----SGIAPVPKLLERGVNVSLGTDGCASNNNLDMFEEMKTAALLHKVN---- 321 (430)
T ss_pred HhcCCEEEEChHHhhh--------hc-----cCCCCHHHHHHCCCeEEEeCCCCccCCCcCHHHHHHHHHHHhhhc----
Confidence 9999999999998752 22 4566899999999999999997543 478999998876433210
Q ss_pred CCCCCCCCHHHHHHHHcHHHHHhcccCCccccccCCCcccEEEeCCCC-----CCC-hhhc----cCCeEEEEEECCEEe
Q 008063 508 WIPSERISLTDALIAHTLSAARACFLENDVGSLSPGKIADFVILSTSS-----WED-FAAE----VSASIEATYVSGVQA 577 (579)
Q Consensus 508 ~~~~~~ls~~~al~~~T~npA~~lgl~~~~G~I~~G~~ADlvvld~~~-----~~~-~~~~----~~~~v~~v~v~G~~v 577 (579)
.....+++++++|+|+|.|||+.+|++ .|+|++||.||||++|.+. +.+ ...+ ...+|..||++|+++
T Consensus 322 ~~~~~~~~~~~al~~aT~~gA~~lg~~--~G~l~~G~~ADlvvld~~~~~~~p~~~~~~~~v~~~~~~~v~~v~v~G~~v 399 (430)
T PRK06038 322 TMDPTALPARQVLEMATVNGAKALGIN--TGMLKEGYLADIIIVDMNKPHLTPVRDVPSHLVYSASGSDVDTTIVDGRIL 399 (430)
T ss_pred cCCCCcCCHHHHHHHHhHHHHHHhCCC--CCccCCCcccCEEEEeCCCCccCCCCChHHheeEeCCCCceeEEEECCEEE
Confidence 112356899999999999999999996 5999999999999999883 332 2233 245899999999998
Q ss_pred C
Q 008063 578 Y 578 (579)
Q Consensus 578 ~ 578 (579)
|
T Consensus 400 ~ 400 (430)
T PRK06038 400 M 400 (430)
T ss_pred E
Confidence 6
|
|
| >PRK08203 hydroxydechloroatrazine ethylaminohydrolase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-35 Score=313.29 Aligned_cols=381 Identities=20% Similarity=0.254 Sum_probs=251.1
Q ss_pred EEEEcCeEEeCCCCC--CeeeEEEEECCEEEEecChHHHHhhccCCCeEEeCCCCeeecccccccccccccCcccccccc
Q 008063 47 LVVTNGVIFTGDDSL--LFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHFIPGGLQMARVKL 124 (579)
Q Consensus 47 ~likn~~v~~~~~~~--~~~~~v~I~~GkI~~Ig~~~~~~~~~~~~~~viD~~g~~V~PG~ID~H~H~~~~~~~~~~~~~ 124 (579)
+++.|+.|+++++.. ..+++|+|+||||++|++..+.+ .++.++||++|++|+|||||+|+|+++....
T Consensus 4 ~i~~~~~v~~~~~~~~~~~~~~v~I~~g~I~~Vg~~~~~~---~~~~~vID~~g~~v~PGlVn~H~H~~~~~~~------ 74 (451)
T PRK08203 4 WIKNPLAIVTMDAARREIADGGLVVEGGRIVEVGPGGALP---QPADEVFDARGHVVTPGLVNTHHHFYQTLTR------ 74 (451)
T ss_pred EEEeccEEEEeCCCceEeeccEEEEECCEEEEEeCCccCC---CCCCeEEeCCCCEEecceEeccccccchhcc------
Confidence 455567999998753 46789999999999999975432 1456899999999999999999999764221
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCCCeEEEeCCCCCCCCCCCCChHHhhhhCCCCeEEEEeCCCchhhhcHHHHHHcCCCCC
Q 008063 125 RGVSHKDEFVRRVKEAVKNSKKGSWILGGGWNNDLWGGDLPMASWIDDITPHNPVWLSRMDGHMGLANSVALQLVGITNL 204 (579)
Q Consensus 125 ~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~p~~~~ld~~~~~~p~~~~~~~~~~~~~n~~~~~~~g~~~~ 204 (579)
+... ....+...|+...
T Consensus 75 -g~~~-------------------------------~~~~~~~~~~~~~------------------------------- 91 (451)
T PRK08203 75 -ALPA-------------------------------AQDAELFPWLTTL------------------------------- 91 (451)
T ss_pred -cccc-------------------------------cCCCcHHHHHHHH-------------------------------
Confidence 0000 0000111121110
Q ss_pred CCCCCCCeEEeCCCCCcCEEEhHhHHHHhcccCCCCCHHHHHHHHHHHHHHHHhcCccEEEeCCcCCCCCccccchHHHH
Q 008063 205 SEDPNGGTIMKTSSGEPTGLLIDAAMKLILPWIPEVSVDERREALLRASNLALSRGVTTVVDFGRYYPGESVQLSWEDFA 284 (579)
Q Consensus 205 ~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Git~v~~~~~~~~~~~~~~~~~~~~ 284 (579)
.......++++.+...+.+...++++|+|++.+++..++.. ......
T Consensus 92 -----------------------------~~~~~~~~~e~~~~~a~~~~~e~l~~G~Ttv~d~~~~~~~~----~~~~~~ 138 (451)
T PRK08203 92 -----------------------------YPVWARLTPEMVRVATQTALAELLLSGCTTSSDHHYLFPNG----LRDALD 138 (451)
T ss_pred -----------------------------hHHHHhCCHHHHHHHHHHHHHHHHhcCcCEEEcceeecccc----ccchHH
Confidence 00011345688888889999999999999999975322211 001111
Q ss_pred HHHHHHhhcCCCeeEEEEccCcc----------------chhhH----HHHHHhcCCCC-CCceEEceEEEEEcCccCCC
Q 008063 285 DVYQWASYSEKMKIRVCLFFPLE----------------TWSSL----ADLINKTGHVL-SDWVYLGGVKAFADGSLGSN 343 (579)
Q Consensus 285 ~~~~~~~~~~~~~i~v~~~~~~~----------------~~~~~----~~~~~~~~~~~-~~~~~~~g~k~~~dg~~~~~ 343 (579)
... +.....++|+....... ...+. .+.++...... .+. ++...
T Consensus 139 ~~~---~a~~~~G~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~-----i~~~~------- 203 (451)
T PRK08203 139 DQI---EAAREIGMRFHATRGSMSLGESDGGLPPDSVVEDEDAILADSQRLIDRYHDPGPGAM-----LRIAL------- 203 (451)
T ss_pred HHH---HHHHHcCCeEEEecceeecCCccCCCCccccccCHHHHHHHHHHHHHHhcCCCCCCe-----EEEEE-------
Confidence 222 22233455555422110 01111 11111100000 011 11100
Q ss_pred cccccCCCCCCCCCCcccCCCHHHHHHHHHHHHHCCCeEEEEecch-HHHHHHHHHH----HHHHHhcCCCCCCceEeec
Q 008063 344 SALFHEPYADEPHNYGLQVMELESLLSMTMASDKSGLQVAIHAIGD-RANDLVLDMY----KSVVVTTGKRDQRFRIEHA 418 (579)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~i~iH~~g~-~~~~~~~~~~----~~~~~~~~~~~~~~~i~H~ 418 (579)
.... ...++++.++++++.|+++|+++++|+.+. .+....++.+ .+.....+..+.++.+.|+
T Consensus 204 --~~~~----------~~~~~~e~l~~~~~~A~~~g~~v~~H~~e~~~~~~~~~~~~g~~~~~~l~~~g~l~~~~~~~H~ 271 (451)
T PRK08203 204 --APCS----------PFSVSRELMRESAALARRLGVRLHTHLAETLDEEAFCLERFGMRPVDYLEDLGWLGPDVWLAHC 271 (451)
T ss_pred --ecCC----------CCcCCHHHHHHHHHHHHHcCCcEEEEeCCCHHHHHHHHHHhCCCHHHHHHHcCCCCCCeEEEEE
Confidence 0111 223789999999999999999999998643 3334444322 1234556777889999999
Q ss_pred cCCChhhHHHHhhCCcEEEecccccccchhHHHHhhChhhhhhhhhhHHHHHHCCCeeeecCCCCCC--CCCHHHHHHHH
Q 008063 419 QHLASGTAARFGDQGIVASMQPQHLLDDADSARKKLGVDRAERESYLFQSLLANNALLALGSDWPVA--DINPLCAIRTA 496 (579)
Q Consensus 419 ~~~~~~~~~~~~~~~i~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD~~~~--~~~~~~~~~~~ 496 (579)
.++++++++++++.|+.+++||.++. .++ ...++++.+++.|+++++|||++.+ ..+++.+++.+
T Consensus 272 ~~l~~~~~~~la~~g~~v~~~P~~~~--------~l~-----~~~~~~~~~~~~Gv~v~lGtD~~~~~~~~~~~~~~~~~ 338 (451)
T PRK08203 272 VHLDDAEIARLARTGTGVAHCPCSNM--------RLA-----SGIAPVRELRAAGVPVGLGVDGSASNDGSNLIGEARQA 338 (451)
T ss_pred eCCCHHHHHHHHhcCCeEEECcHHhh--------hhc-----cCCCCHHHHHHCCCeEEEecCCCccCCCcCHHHHHHHH
Confidence 99999999999999999999998764 233 4566899999999999999998654 37899888877
Q ss_pred HcccCCCCCCCCCCCCCCCHHHHHHHHcHHHHHhcccCCccccccCCCcccEEEeCCCCCC------Chhhcc---CCeE
Q 008063 497 MKRIPPGWDNAWIPSERISLTDALIAHTLSAARACFLENDVGSLSPGKIADFVILSTSSWE------DFAAEV---SASI 567 (579)
Q Consensus 497 ~~~~~~~~~~~~~~~~~ls~~~al~~~T~npA~~lgl~~~~G~I~~G~~ADlvvld~~~~~------~~~~~~---~~~v 567 (579)
+...... .....++++++|+++|.|||+.+|++ .+|+|++||.|||||+|.++.. ++..+. ..+|
T Consensus 339 ~~~~~~~-----~~~~~i~~~~~l~~~T~~~A~~lg~~-~~G~l~~G~~ADlvv~d~~~~~~~~~~~p~~~l~~~~~~~v 412 (451)
T PRK08203 339 LLLQRLR-----YGPDAMTAREALEWATLGGARVLGRD-DIGSLAPGKLADLALFDLDELRFAGAHDPVAALVLCGPPRA 412 (451)
T ss_pred HHHhhcc-----cCCCCCCHHHHHHHHHHHHHHHhCCC-CCCCcCCCCccCEEEEcCCccccCCccChHHHHHccCCCCc
Confidence 5432211 01345999999999999999999998 5899999999999999987642 222221 3589
Q ss_pred EEEEECCEEeC
Q 008063 568 EATYVSGVQAY 578 (579)
Q Consensus 568 ~~v~v~G~~v~ 578 (579)
..||++|++||
T Consensus 413 ~~v~v~G~~v~ 423 (451)
T PRK08203 413 DRVMVGGRWVV 423 (451)
T ss_pred cEEEECCEEEE
Confidence 99999999987
|
|
| >PRK07203 putative chlorohydrolase/aminohydrolase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-34 Score=304.19 Aligned_cols=388 Identities=16% Similarity=0.165 Sum_probs=249.3
Q ss_pred EEEEcCeEEeCCCC--CCeeeEEEEECCEEEEecChHHHHhhccCCCeEEeCCCCeeecccccccccccccCcccccccc
Q 008063 47 LVVTNGVIFTGDDS--LLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHFIPGGLQMARVKL 124 (579)
Q Consensus 47 ~likn~~v~~~~~~--~~~~~~v~I~~GkI~~Ig~~~~~~~~~~~~~~viD~~g~~V~PG~ID~H~H~~~~~~~~~~~~~ 124 (579)
++|+|++|+++++. ...+++|+|+||+|++|++..+.... .++.++||++|++|+|||||+|+|+++........+
T Consensus 2 ~li~~~~i~~~~~~~~~~~~~~v~I~~g~I~~Vg~~~~~~~~-~~~~~viD~~g~lv~PGfID~H~H~~~~~~rg~~~~- 79 (442)
T PRK07203 2 LLIGNGTAITRDPAKPVIEDGAIAIEGNVIVEIGTTDELKAK-YPDAEFIDAKGKLIMPGLINSHNHIYSGLARGMMAN- 79 (442)
T ss_pred EEEECCEEEeCCCCCceeeccEEEEECCEEEEEeCchhhccc-cCCCeEEeCCCCEEecceeeccccchhhhhcccccc-
Confidence 68999999986442 23567999999999999975433211 145689999999999999999999865422100000
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCCCeEEEeCCCCCCCCCCCCChHHhhhhCCCCeEEEEeCCCchhhhcHHHHHHcCCCCC
Q 008063 125 RGVSHKDEFVRRVKEAVKNSKKGSWILGGGWNNDLWGGDLPMASWIDDITPHNPVWLSRMDGHMGLANSVALQLVGITNL 204 (579)
Q Consensus 125 ~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~p~~~~ld~~~~~~p~~~~~~~~~~~~~n~~~~~~~g~~~~ 204 (579)
.....++ .+|+...
T Consensus 80 --~~~~~~l---------------------------------~~~l~~~------------------------------- 93 (442)
T PRK07203 80 --IPPPPDF---------------------------------ISILKNL------------------------------- 93 (442)
T ss_pred --cCCCCCH---------------------------------HHHHHhh-------------------------------
Confidence 0000001 1111110
Q ss_pred CCCCCCCeEEeCCCCCcCEEEhHhHHHHhcccCCCCCHHHHHHHHHHHHHHHHhcCccEEEeCCcCCCCCccccchHHHH
Q 008063 205 SEDPNGGTIMKTSSGEPTGLLIDAAMKLILPWIPEVSVDERREALLRASNLALSRGVTTVVDFGRYYPGESVQLSWEDFA 284 (579)
Q Consensus 205 ~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Git~v~~~~~~~~~~~~~~~~~~~~ 284 (579)
.....+.+++++.+...+.+...++++|+|++.++....... +...
T Consensus 94 ----------------------------~~~~~~~~t~e~~~~~a~~~~~e~l~~GtTt~~d~~~~~~~~------~~~~ 139 (442)
T PRK07203 94 ----------------------------WWRLDRALTLEDVYYSALICSLEAIKNGVTTVFDHHASPNYI------GGSL 139 (442)
T ss_pred ----------------------------eehhhhcCCHHHHHHHHHHHHHHHHHcCceEEEccccccccc------cchH
Confidence 000112456688888888888999999999999974221110 1111
Q ss_pred -HHHHHHhhcCCCeeEEEEccCccc---hhhHHHHHHhcCCCCCCceE-Ec-eEEEEEcCccCCCcccccCCCCCCCCCC
Q 008063 285 -DVYQWASYSEKMKIRVCLFFPLET---WSSLADLINKTGHVLSDWVY-LG-GVKAFADGSLGSNSALFHEPYADEPHNY 358 (579)
Q Consensus 285 -~~~~~~~~~~~~~i~v~~~~~~~~---~~~~~~~~~~~~~~~~~~~~-~~-g~k~~~dg~~~~~~~~~~~~~~~~~~~~ 358 (579)
.+.+. ..+.++|.+......+ .+...+...........+.. .. .+.. ....+.
T Consensus 140 ~~~~~a---~~~~GiR~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~---------~~~p~~--------- 198 (442)
T PRK07203 140 FTIADA---AKKVGLRAMLCYETSDRDGEKELQEGVEENIRFIKHIDEAKDDMVEA---------MFGLHA--------- 198 (442)
T ss_pred HHHHHH---HHHhCCeEEEecccccCCcchhHHHHHHHHHHHHHHhcCCCCCceEE---------EEccCC---------
Confidence 22222 2345566654322111 11111111110000000000 00 0000 001122
Q ss_pred cccCCCHHHHHHHHHHHHHCCCeEEEEecch-HHHHHHHHH----HHHHHHhcCCCCCCceEeeccCCChhhHHHHhhCC
Q 008063 359 GLQVMELESLLSMTMASDKSGLQVAIHAIGD-RANDLVLDM----YKSVVVTTGKRDQRFRIEHAQHLASGTAARFGDQG 433 (579)
Q Consensus 359 ~~~~~~~~~l~~~~~~a~~~g~~i~iH~~g~-~~~~~~~~~----~~~~~~~~~~~~~~~~i~H~~~~~~~~~~~~~~~~ 433 (579)
...++++.++++.+.|+++|+++++|+.+. .+.....+. ..+.....|..+.+..+.||.++++++++++++.|
T Consensus 199 -~~~~s~~~l~~~~~lA~~~g~~i~~H~~E~~~e~~~~~~~~g~~~v~~l~~~Gll~~~~~~~H~~~~~~~d~~~la~~g 277 (442)
T PRK07203 199 -SFTLSDATLEKCREAVKETGRGYHIHVAEGIYDVSDSHKKYGKDIVERLADFGLLGEKTLAAHCIYLSDEEIDLLKETD 277 (442)
T ss_pred -CcCcCHHHHHHHHHHHHHcCCcEEEEecCChHHHHHHHHHcCCCHHHHHHhCCCCCCCcEEEEeecCCHHHHHHHHhcC
Confidence 234788999999999999999999999854 444444442 22345667888899999999999999999999999
Q ss_pred cEEEecccccccchhHHHHhhChhhhhhhhhhHHHHHHCCCeeeecCCCCCCCCCHHHHHHHHHcccCCCCCCCCCCCCC
Q 008063 434 IVASMQPQHLLDDADSARKKLGVDRAERESYLFQSLLANNALLALGSDWPVADINPLCAIRTAMKRIPPGWDNAWIPSER 513 (579)
Q Consensus 434 i~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 513 (579)
+.+++||.++. .++ ...+|+.+++++|+++++|||+. ..+++.+|+.+....... .....
T Consensus 278 ~~v~~~P~sn~--------~l~-----~g~~p~~~~~~~Gv~v~lGtD~~--~~d~~~~~~~a~~~~~~~-----~~~~~ 337 (442)
T PRK07203 278 TFVVHNPESNM--------GNA-----VGYNPVLEMIKNGILLGLGTDGY--TSDMFESYKVANFKHKHA-----GGDPN 337 (442)
T ss_pred CeEEECchhhh--------hcc-----cCCCCHHHHHHCCCeEEEcCCCC--CccHHHHHHHHHHHhccc-----cCCCC
Confidence 99999999885 233 45669999999999999999974 358899888874321110 01122
Q ss_pred CCHHHHHHHHcHHHHHhcc--cCCccccccCCCcccEEEeCCCCCC--C----hhhc----cCCeEEEEEECCEEeC
Q 008063 514 ISLTDALIAHTLSAARACF--LENDVGSLSPGKIADFVILSTSSWE--D----FAAE----VSASIEATYVSGVQAY 578 (579)
Q Consensus 514 ls~~~al~~~T~npA~~lg--l~~~~G~I~~G~~ADlvvld~~~~~--~----~~~~----~~~~v~~v~v~G~~v~ 578 (579)
.+.+++++|+|.+||+.+| +++++|+|++||.||||++|.+... + ..++ ....|..||++|++|+
T Consensus 338 ~~~~~~~~~aT~~gA~~lg~~~~~~~G~l~~G~~ADlvv~d~~~~~~~~~~~~~~~~v~~~~~~~v~~v~v~G~~v~ 414 (442)
T PRK07203 338 VGWPESPAMLFENNNKIAERYFGAKFGILEEGAKADLIIVDYNPPTPLNEDNINGHILFGMNGGSVDTTIVNGKVVM 414 (442)
T ss_pred CCHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCccCEEEEcCCCCeecCccccccceEeecCCCceEEEEECCEEEE
Confidence 4578999999999999999 4566899999999999999976422 1 1122 1568999999999986
|
|
| >PRK06151 N-ethylammeline chlorohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-35 Score=314.95 Aligned_cols=387 Identities=19% Similarity=0.221 Sum_probs=250.2
Q ss_pred ccEEEEcCeEEeCCCC---CCeeeEEEEECCEEEEecChHHHHhhccCCCeEEeCCCCeeecccccccccccccCccccc
Q 008063 45 ADLVVTNGVIFTGDDS---LLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHFIPGGLQMAR 121 (579)
Q Consensus 45 ~~~likn~~v~~~~~~---~~~~~~v~I~~GkI~~Ig~~~~~~~~~~~~~~viD~~g~~V~PG~ID~H~H~~~~~~~~~~ 121 (579)
|.++|+|++|++.++. ...+++|+|+||+|++|++... .++.++||+.|++|+|||||+|+|+.......
T Consensus 1 ~~~li~~~~v~~~d~~~~~~~~~~~VlVe~g~I~~Vg~~~~-----~~~~~viD~~g~~vlPGlVdaH~Hl~~~~~~~-- 73 (488)
T PRK06151 1 MRTLIKARWVLGFDDGDHRLLRDGEVVFEGDRILFVGHRFD-----GEVDRVIDAGNALVGPGFIDLDALSDLDTTIL-- 73 (488)
T ss_pred CeEEEEccEEEEEcCCCCeEEeCcEEEEECCEEEEecCCCC-----CCCCeEEeCCCCEEecCEEeeecccchhhhhc--
Confidence 4689999999876542 3467899999999999998532 13457999999999999999999974311000
Q ss_pred cccCCCCCHHHHHHHHHHHHHcCCCCCeEEEeCCCCCCCCCCCCChHHhhh-hCCCCeEEEEeCCCchhhhcHHHHHHcC
Q 008063 122 VKLRGVSHKDEFVRRVKEAVKNSKKGSWILGGGWNNDLWGGDLPMASWIDD-ITPHNPVWLSRMDGHMGLANSVALQLVG 200 (579)
Q Consensus 122 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~p~~~~ld~-~~~~~p~~~~~~~~~~~~~n~~~~~~~g 200 (579)
... ..+ .|+.. .++.
T Consensus 74 ----~~~----------------------------------~~~--~~~~~~~~~~------------------------ 89 (488)
T PRK06151 74 ----GLD----------------------------------NGP--GWAKGRVWSR------------------------ 89 (488)
T ss_pred ----ccc----------------------------------cch--hHHhcccCch------------------------
Confidence 000 000 01000 0000
Q ss_pred CCCCCCCCCCCeEEeCCCCCcCEEEhHhHHHHhcccCCCCCHHHHHHHHHHHHHHHHhcCccEEEeCCcCCCCCccccch
Q 008063 201 ITNLSEDPNGGTIMKTSSGEPTGLLIDAAMKLILPWIPEVSVDERREALLRASNLALSRGVTTVVDFGRYYPGESVQLSW 280 (579)
Q Consensus 201 ~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Git~v~~~~~~~~~~~~~~~~ 280 (579)
. ..........++++.+......+.+++++|+|++.|++..++. .+....
T Consensus 90 ----------------------------~-~~~~~~~~~~t~e~~~~~a~~~~~e~L~~GvTt~~d~~~~~~~-~~~~~~ 139 (488)
T PRK06151 90 ----------------------------D-YVEAGRREMYTPEELAFQKRYAFAQLLRNGITTAMPIASLFYR-QWAETY 139 (488)
T ss_pred ----------------------------h-hhhcchhhcCCHHHHHHHHHHHHHHHHhcCeeEEehhhhhhcc-cccccc
Confidence 0 0000001245678888899999999999999999987532211 000111
Q ss_pred HHHHHHHHHHhhcCCCeeEEEEccCccc--------------------h---hhHHHHHHhcCCCCCCceEEceEEEEEc
Q 008063 281 EDFADVYQWASYSEKMKIRVCLFFPLET--------------------W---SSLADLINKTGHVLSDWVYLGGVKAFAD 337 (579)
Q Consensus 281 ~~~~~~~~~~~~~~~~~i~v~~~~~~~~--------------------~---~~~~~~~~~~~~~~~~~~~~~g~k~~~d 337 (579)
.......+.. ...++|.+....... . .+..++++.......+. ++..
T Consensus 140 ~~~~~~~~a~---~~~GiR~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~-----i~~~-- 209 (488)
T PRK06151 140 AEFAAAAEAA---GRLGLRVYLGPAYRSGGSVLEADGSLEVVFDEARGLAGLEEAIAFIKRVDGAHNGL-----VRGM-- 209 (488)
T ss_pred chHHHHHHHH---HHcCCeEEecchhccCccccccCCCCCccccchhHHHHHHHHHHHHHHhhcccCCc-----eEEE--
Confidence 1122222222 234555544321100 0 01111111110001111 1111
Q ss_pred CccCCCcccccCCCCCCCCCCcccCCCHHHHHHHHHHHHHCCCeEEEEec-chHHHHHHHHHHH----HHHHhcCCCCCC
Q 008063 338 GSLGSNSALFHEPYADEPHNYGLQVMELESLLSMTMASDKSGLQVAIHAI-GDRANDLVLDMYK----SVVVTTGKRDQR 412 (579)
Q Consensus 338 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~i~iH~~-g~~~~~~~~~~~~----~~~~~~~~~~~~ 412 (579)
..|. ....++++.++++++.|+++|+++++|+. +..+.+.+.+.+. +...+.+..+.+
T Consensus 210 ----------~~p~-------~~~~~s~e~l~~~~~~A~~~g~~v~~H~~e~~~~~~~~~~~~g~~~~~~~~~~g~l~~r 272 (488)
T PRK06151 210 ----------LAPD-------RIETCTVDLLRRTAAAARELGCPVRLHCAQGVLEVETVRRLHGTTPLEWLADVGLLGPR 272 (488)
T ss_pred ----------EcCC-------CCCCCCHHHHHHHHHHHHHCCCcEEEEECCchHHHHHHHHHcCCCHHHHHHHcCCCCCC
Confidence 0111 12237899999999999999999999996 5555555544322 234556777889
Q ss_pred ceEeeccCCCh---------hhHHHHhhCCcEEEecccccccchhHHHHhhChhhhhhhhhhHHHHHHCCCeeeecCCCC
Q 008063 413 FRIEHAQHLAS---------GTAARFGDQGIVASMQPQHLLDDADSARKKLGVDRAERESYLFQSLLANNALLALGSDWP 483 (579)
Q Consensus 413 ~~i~H~~~~~~---------~~~~~~~~~~i~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD~~ 483 (579)
+.+.||.++++ ++++++++.|+.+++||.++. .++ ....+++.+.+.|+++++|||+
T Consensus 273 ~~l~H~~~l~~~~~~~~~~~~~~~~la~~g~~v~~~P~~~~--------~~g-----~~~~p~~~l~~~Gv~v~lGtD~- 338 (488)
T PRK06151 273 LLIPHATYISGSPRLNYSGGDDLALLAEHGVSIVHCPLVSA--------RHG-----SALNSFDRYREAGINLALGTDT- 338 (488)
T ss_pred cEEEEEEEcCCccccccCCHHHHHHHHhcCCEEEECchhhh--------hhc-----cccccHHHHHHCCCcEEEECCC-
Confidence 99999999999 999999999999999997653 233 4566899999999999999997
Q ss_pred CCCCCHHHHHHHHHcccCCCCCCCCCCCCCCCHHHHHHHHcHHHHHhcccCCccccccCCCcccEEEeCCCCCC------
Q 008063 484 VADINPLCAIRTAMKRIPPGWDNAWIPSERISLTDALIAHTLSAARACFLENDVGSLSPGKIADFVILSTSSWE------ 557 (579)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~npA~~lgl~~~~G~I~~G~~ADlvvld~~~~~------ 557 (579)
.+.+++..++.++..... .......++++++|+++|.|||+.+|+++ +|+|++||.|||||+|.+.++
T Consensus 339 -~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~al~~aT~~~A~~lg~~~-~G~I~~G~~ADlvvld~~~~~~~~~~d 412 (488)
T PRK06151 339 -FPPDMVMNMRVGLILGRV----VEGDLDAASAADLFDAATLGGARALGRDD-LGRLAPGAKADIVVFDLDGLHMGPVFD 412 (488)
T ss_pred -CCccHHHHHHHHHHHHHH----hcCCCCCCCHHHHHHHHHHHHHHHhCCCC-CcccCCCCcCCEEEEeCCccccCCccC
Confidence 346888888776532110 00112348999999999999999999987 799999999999999988653
Q ss_pred Chhhc----cCCeEEEEEECCEEeCC
Q 008063 558 DFAAE----VSASIEATYVSGVQAYP 579 (579)
Q Consensus 558 ~~~~~----~~~~v~~v~v~G~~v~~ 579 (579)
+..++ ...+|..||++|++||.
T Consensus 413 ~~~~lv~~~~~~~v~~v~v~G~~v~~ 438 (488)
T PRK06151 413 PIRTLVTGGSGRDVRAVFVDGRVVME 438 (488)
T ss_pred HHHHHHhhCCCCCccEEEECCEEEEE
Confidence 12221 13589999999999873
|
|
| >PRK12393 amidohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-34 Score=304.83 Aligned_cols=388 Identities=21% Similarity=0.254 Sum_probs=250.9
Q ss_pred ccEEEEcCe-EEeCCCC--CCeee-EEEEECCEEEEecChHHHHhhccCCCeEEeCCCCeeecccccccccccccCcccc
Q 008063 45 ADLVVTNGV-IFTGDDS--LLFAD-SMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHFIPGGLQMA 120 (579)
Q Consensus 45 ~~~likn~~-v~~~~~~--~~~~~-~v~I~~GkI~~Ig~~~~~~~~~~~~~~viD~~g~~V~PG~ID~H~H~~~~~~~~~ 120 (579)
.+++|+|++ |++.... ....+ +|+|+||+|++|++. . . .++.++||++|++|+|||||+|+|+++....
T Consensus 2 ~~~li~~~~~v~~~~~~~~~~~~~~~v~I~~g~I~~Vg~~-~--~--~~~~~viD~~g~~v~PG~VnaH~Hl~~~~~r-- 74 (457)
T PRK12393 2 PSLLIRNAAAIMTGLPGDAARLGGPDIRIRDGRIAAIGAL-T--P--LPGERVIDATDCVVYPGWVNTHHHLFQSLLK-- 74 (457)
T ss_pred CcEEEECCeEEEecCCCccccccCceEEEECCEEEEEecc-C--C--CCCCeEEeCCCCEEecCEeecccCccccccc--
Confidence 468999996 7876543 23444 899999999999982 1 1 2567899999999999999999999765321
Q ss_pred ccccCCCCCHHHHHHHHHHHHHcCCCCCeEEEeCCCCCCCCCCCCChHHhhhhCCCCeEEEEeCCCchhhhcHHHHHHcC
Q 008063 121 RVKLRGVSHKDEFVRRVKEAVKNSKKGSWILGGGWNNDLWGGDLPMASWIDDITPHNPVWLSRMDGHMGLANSVALQLVG 200 (579)
Q Consensus 121 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~p~~~~ld~~~~~~p~~~~~~~~~~~~~n~~~~~~~g 200 (579)
|... . ...+..+|+....
T Consensus 75 -----g~~~--------------------------~-----~~~~~~~wl~~~~-------------------------- 92 (457)
T PRK12393 75 -----GVPA--------------------------G-----INQSLTAWLAAVP-------------------------- 92 (457)
T ss_pred -----cccc--------------------------c-----cCCchHHHhhhCc--------------------------
Confidence 1100 0 0011112221100
Q ss_pred CCCCCCCCCCCeEEeCCCCCcCEEEhHhHHHHhcccCCCCCHHHHHHHHHHHHHHHHhcCccEEEeCCcC-CCCCccccc
Q 008063 201 ITNLSEDPNGGTIMKTSSGEPTGLLIDAAMKLILPWIPEVSVDERREALLRASNLALSRGVTTVVDFGRY-YPGESVQLS 279 (579)
Q Consensus 201 ~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Git~v~~~~~~-~~~~~~~~~ 279 (579)
.......++++.+...+.+..+++++|+|++.|+... .+.. .
T Consensus 93 ---------------------------------~~~~~~~~~~~~~~~a~~~~~e~l~~G~Ttv~d~~~~~~~~~----~ 135 (457)
T PRK12393 93 ---------------------------------YRFRARFDEDLFRLAARIGLVELLRSGCTTVADHHYLYHPGM----P 135 (457)
T ss_pred ---------------------------------chhhhhCCHHHHHHHHHHHHHHHHhCCccEeecchhhccccc----c
Confidence 0001234668888899999999999999999997421 1111 1
Q ss_pred hHHHHHHHHHHhhcCCCeeEEEEccCccc--------------hhhHHHHHHhcCCCCCCceE--Ece-EEEEEcCccCC
Q 008063 280 WEDFADVYQWASYSEKMKIRVCLFFPLET--------------WSSLADLINKTGHVLSDWVY--LGG-VKAFADGSLGS 342 (579)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~i~v~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~--~~g-~k~~~dg~~~~ 342 (579)
.+....+.+ ...+.++|..+...... .....+...........+.. ..+ +.+
T Consensus 136 ~~~~~~~~~---a~~~~G~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-------- 204 (457)
T PRK12393 136 FDTGDILFD---EAEALGMRFVLCRGGATQTRGDHPGLPTALRPETLDQMLADVERLVSRYHDASPDSLRRV-------- 204 (457)
T ss_pred cchHHHHHH---HHHHcCCeEEEEccccccccccCCCCCCcccccCHHHHHHHHHHHHHHhcCCCcCCceEE--------
Confidence 111112222 22345566654221100 00001111000000000000 000 000
Q ss_pred CcccccCCCCCCCCCCcccCCCHHHHHHHHHHHHHCCCeEEEEecch-HHHHHHHHHHH----HHHHhcCCCCCCceEee
Q 008063 343 NSALFHEPYADEPHNYGLQVMELESLLSMTMASDKSGLQVAIHAIGD-RANDLVLDMYK----SVVVTTGKRDQRFRIEH 417 (579)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~i~iH~~g~-~~~~~~~~~~~----~~~~~~~~~~~~~~i~H 417 (579)
......| ...++++.++++.+.|+++|+++++|+.+. .++....+.+. +.....+..+.++.+.|
T Consensus 205 -~~~~~~~---------~~~~~~e~l~~~~~~a~~~g~~~~~H~~e~~~~~~~~~~~~g~~~~~~l~~~g~l~~~~~~~H 274 (457)
T PRK12393 205 -VVAPTTP---------TFSLPPELLREVARAARGMGLRLHSHLSETVDYVDFCREKYGMTPVQFVAEHDWLGPDVWFAH 274 (457)
T ss_pred -EEcCCCC---------CCCcCHHHHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHHhCCCHHHHHHHcCCCCCCeEEEE
Confidence 0001111 124788999999999999999999999743 33444443322 23345666778899999
Q ss_pred ccCCChhhHHHHhhCCcEEEecccccccchhHHHHhhChhhhhhhhhhHHHHHHCCCeeeecCCCCC--CCCCHHHHHHH
Q 008063 418 AQHLASGTAARFGDQGIVASMQPQHLLDDADSARKKLGVDRAERESYLFQSLLANNALLALGSDWPV--ADINPLCAIRT 495 (579)
Q Consensus 418 ~~~~~~~~~~~~~~~~i~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD~~~--~~~~~~~~~~~ 495 (579)
|.++++++++++++.|+.+++||.++. .++ ...++++.+.+.|+++++|||++. ...+++.+|+.
T Consensus 275 ~~~l~~~d~~~la~~g~~v~~~P~sn~--------~lg-----~g~~~~~~~~~~Gv~v~lGtD~~~~~~~~d~~~~~~~ 341 (457)
T PRK12393 275 LVKLDAEEIALLAQTGTGIAHCPQSNG--------RLG-----SGIAPALAMEAAGVPVSLGVDGAASNESADMLSEAHA 341 (457)
T ss_pred EecCCHHHHHHHHHcCCeEEECchhhh--------hhc-----ccCCCHHHHHHCCCeEEEecCCcccCCCccHHHHHHH
Confidence 999999999999999999999998764 344 446699999999999999999754 35899999987
Q ss_pred HHcccCCCCCCCCCCCCCCCHHHHHHHHcHHHHHhcccCCccccccCCCcccEEEeCCCCCC-----C-----hhhccCC
Q 008063 496 AMKRIPPGWDNAWIPSERISLTDALIAHTLSAARACFLENDVGSLSPGKIADFVILSTSSWE-----D-----FAAEVSA 565 (579)
Q Consensus 496 ~~~~~~~~~~~~~~~~~~ls~~~al~~~T~npA~~lgl~~~~G~I~~G~~ADlvvld~~~~~-----~-----~~~~~~~ 565 (579)
++.+.... .....++++++++++|.+||+.+|+++ +|+|++|+.|||+|+|.++.. + .......
T Consensus 342 a~~~~~~~-----~~~~~~~~~~~l~~~T~~~A~~l~~~~-~G~l~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~ 415 (457)
T PRK12393 342 AWLLHRAE-----GGADATTVEDVVHWGTAGGARVLGLDA-IGTLAVGQAADLAIYDLDDPRFFGLHDPAIAPVACGGPA 415 (457)
T ss_pred HHHHhhhc-----CCCCCCCHHHHHHHHhHHHHHHhCCCC-CCCcCCCCcCCEEEEeCCCcccCCCCCchhhhhccCCCC
Confidence 76543210 122359999999999999999999986 899999999999999987422 1 1111256
Q ss_pred eEEEEEECCEEeC
Q 008063 566 SIEATYVSGVQAY 578 (579)
Q Consensus 566 ~v~~v~v~G~~v~ 578 (579)
+|..||++|++||
T Consensus 416 ~v~~v~v~G~~v~ 428 (457)
T PRK12393 416 PVKALLVNGRPVV 428 (457)
T ss_pred CeeEEEECCEEEE
Confidence 8999999999986
|
|
| >PRK09228 guanine deaminase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-34 Score=304.81 Aligned_cols=198 Identities=24% Similarity=0.300 Sum_probs=159.2
Q ss_pred CCCHHHHHHHHHHHHHC-CCeEEEEecch-HHHHHHHHHH------HHHHHhcCCCCCCceEeeccCCChhhHHHHhhCC
Q 008063 362 VMELESLLSMTMASDKS-GLQVAIHAIGD-RANDLVLDMY------KSVVVTTGKRDQRFRIEHAQHLASGTAARFGDQG 433 (579)
Q Consensus 362 ~~~~~~l~~~~~~a~~~-g~~i~iH~~g~-~~~~~~~~~~------~~~~~~~~~~~~~~~i~H~~~~~~~~~~~~~~~~ 433 (579)
.++++.++++.+.|+++ ++++++|+.+. .+.....+.+ .+.....|..+.+..+.|+.++++++++++++.|
T Consensus 207 t~s~~~l~~~~~lA~~~~~~~i~~Hl~E~~~e~~~~~~~~g~~~~~~~~l~~~G~l~~~~~~~H~~~l~~~~~~~la~~g 286 (433)
T PRK09228 207 TSTPEQLEAAGALAREHPDVWIQTHLSENLDEIAWVKELFPEARDYLDVYERYGLLGPRAVFAHCIHLEDRERRRLAETG 286 (433)
T ss_pred cCCHHHHHHHHHHHHHCCCCceEEeecCChhHHHHHHHHcCCCCCHHHHHHHcCCCCCCeEEEeccCCCHHHHHHHHHcC
Confidence 37889999999999998 99999999844 4444444432 3345667778889999999999999999999999
Q ss_pred cEEEecccccccchhHHHHhhChhhhhhhhhhHHHHHHCCCeeeecCCCCC-CCCCHHHHHHHHHcccCCCCCCCCCCCC
Q 008063 434 IVASMQPQHLLDDADSARKKLGVDRAERESYLFQSLLANNALLALGSDWPV-ADINPLCAIRTAMKRIPPGWDNAWIPSE 512 (579)
Q Consensus 434 i~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 512 (579)
+.+++||.++. .++ ...++++.+.++|+++++|||.+. .+.+++..|+.+...... ...
T Consensus 287 ~~v~~~P~sn~--------~lg-----~g~~~~~~~~~~Gv~v~lGtD~~~~~~~d~~~~~~~~~~~~~~-------~~~ 346 (433)
T PRK09228 287 AAIAFCPTSNL--------FLG-----SGLFDLKRADAAGVRVGLGTDVGGGTSFSMLQTMNEAYKVQQL-------QGY 346 (433)
T ss_pred CeEEECCccHH--------hhc-----CCCcCHHHHHHCCCeEEEecCCCCCCCCCHHHHHHHHHHHhhc-------ccC
Confidence 99999999875 233 456689999999999999999865 357899998887643211 234
Q ss_pred CCCHHHHHHHHcHHHHHhcccCCccccccCCCcccEEEeCCCCC-C-C------------hhhcc----CCeEEEEEECC
Q 008063 513 RISLTDALIAHTLSAARACFLENDVGSLSPGKIADFVILSTSSW-E-D------------FAAEV----SASIEATYVSG 574 (579)
Q Consensus 513 ~ls~~~al~~~T~npA~~lgl~~~~G~I~~G~~ADlvvld~~~~-~-~------------~~~~~----~~~v~~v~v~G 574 (579)
+++++++|+++|.+||+.+|+++.+|+|++||.||||++|.++. . . +..+. ..+|..|||+|
T Consensus 347 ~~~~~~~l~~aT~~~A~~lg~~~~~G~l~~Gk~ADlvv~d~~~~~~~~~~~~~~~~~~d~~~~lv~~~~~~~V~~v~VdG 426 (433)
T PRK09228 347 RLSPFQAFYLATLGGARALGLDDRIGNLAPGKEADFVVLDPAATPLLALRTARAESLEELLFALMTLGDDRAVAETYVAG 426 (433)
T ss_pred CCCHHHHHHHHhHHHHHHhCCCCCCcccCCCCCCCEEEEcCCCCccccchhcccCCHHHHHHHHhhcCCccceeEEEECC
Confidence 58999999999999999999998799999999999999998752 1 1 11121 56999999999
Q ss_pred EEeCC
Q 008063 575 VQAYP 579 (579)
Q Consensus 575 ~~v~~ 579 (579)
++|+.
T Consensus 427 ~~v~~ 431 (433)
T PRK09228 427 RPVYR 431 (433)
T ss_pred EEecc
Confidence 99874
|
|
| >PRK09356 imidazolonepropionase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=305.27 Aligned_cols=386 Identities=24% Similarity=0.259 Sum_probs=239.8
Q ss_pred CccEEEEcCeEEeCCCC------CCeeeEEEEECCEEEEecChHHHHhhccCCCeEEeCCCCeeecccccccccccccCc
Q 008063 44 EADLVVTNGVIFTGDDS------LLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHFIPGGL 117 (579)
Q Consensus 44 ~~~~likn~~v~~~~~~------~~~~~~v~I~~GkI~~Ig~~~~~~~~~~~~~~viD~~g~~V~PG~ID~H~H~~~~~~ 117 (579)
+++++|+|++|+++++. ...+++|+|+||||++|++..+.+. .++.++||++|++|+|||||+|+|+.....
T Consensus 2 ~~~~li~~~~v~~~~~~~~~~~~~~~~~~v~i~~g~I~~vg~~~~~~~--~~~~~~iD~~g~~v~PG~id~H~Hl~~~~~ 79 (406)
T PRK09356 2 MADLLWTNAQLATMDGGGMGELGIIEDGAIAIEDGKIVWVGPEADLPA--AYAAEVIDAGGKLVTPGLIDCHTHLVFGGN 79 (406)
T ss_pred CceEEEECCEEEecCCCCccccccccCcEEEEECCEEEEEeCcccccc--ccCceEEECCCCEEeeceEecCCCcccCCC
Confidence 46799999999998653 3467899999999999998654321 133689999999999999999999865321
Q ss_pred cccccccCCCCCHHHHHHHHHHHHHcCCCCCeEEEeCCCCCCCCCCCCChHHhhhhCCCCeEEEEeCCCchhhhcHHHHH
Q 008063 118 QMARVKLRGVSHKDEFVRRVKEAVKNSKKGSWILGGGWNNDLWGGDLPMASWIDDITPHNPVWLSRMDGHMGLANSVALQ 197 (579)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~p~~~~ld~~~~~~p~~~~~~~~~~~~~n~~~~~ 197 (579)
.. .++..... ..+..+++..
T Consensus 80 ~~-----------~~~~~~~~------------------------~~~~~~~~~~------------------------- 99 (406)
T PRK09356 80 RA-----------NEFELRLQ------------------------GVSYEEIAAQ------------------------- 99 (406)
T ss_pred cH-----------HHHHHHHC------------------------CCcHHHHHHh-------------------------
Confidence 10 00000000 0000000000
Q ss_pred HcCCCCCCCCCCCCeEEeCCCCCcCEEEhHhHHHHhcccCCCCCHHHHHHHHHHHHHHHHhcCccEEEeCCcCCCCCccc
Q 008063 198 LVGITNLSEDPNGGTIMKTSSGEPTGLLIDAAMKLILPWIPEVSVDERREALLRASNLALSRGVTTVVDFGRYYPGESVQ 277 (579)
Q Consensus 198 ~~g~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Git~v~~~~~~~~~~~~~ 277 (579)
.|+. ...+ ......++++.....+..+..++++|+|++.+.+.+ +.+.
T Consensus 100 -----------~~~~-----------------~~~~-~~~~~~~~e~~~~~a~~~~~~~l~~GvTtv~~~~~~--~~~~- 147 (406)
T PRK09356 100 -----------GGGI-----------------LSTV-RATRAASEEELFAQALPRLDALLAEGVTTVEIKSGY--GLDL- 147 (406)
T ss_pred -----------cCCh-----------------HHHH-HHHHhCCHHHHHHHHHHHHHHHHhcCceEEEeeccC--CCCH-
Confidence 0000 0000 011234567788888999999999999999986422 1111
Q ss_pred cchHHHHHHHHHHhhcCCCeeEEEEcc--Cccc-h----hhHHH-----HHHhcCCCCCCceEEceEEEEEcCccCCCcc
Q 008063 278 LSWEDFADVYQWASYSEKMKIRVCLFF--PLET-W----SSLAD-----LINKTGHVLSDWVYLGGVKAFADGSLGSNSA 345 (579)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~i~v~~~~--~~~~-~----~~~~~-----~~~~~~~~~~~~~~~~g~k~~~dg~~~~~~~ 345 (579)
.......+..+.+.....+.+...... ..+. . +...+ ....... ... ...++.+..
T Consensus 148 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~--~~~i~~~~~-------- 215 (406)
T PRK09356 148 ETELKMLRVARRLGEEHPVDVVTTFLGAHAVPPEYKGRPDAYIDLVCEEMLPAVAE--EGL--ADAVDVFCE-------- 215 (406)
T ss_pred HHHHHHHHHHHHHhhhCCCceEeeeeecccCCccccCCHHHHHHHHHHHHhHHHHh--cCC--cceEEEEec--------
Confidence 011112233333332222222211110 0010 0 00000 1110000 000 111111110
Q ss_pred cccCCCCCCCCCCcccCCCHHHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhcCCCCCCceEeeccCCChhh
Q 008063 346 LFHEPYADEPHNYGLQVMELESLLSMTMASDKSGLQVAIHAIGDRANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLASGT 425 (579)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~i~iH~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~H~~~~~~~~ 425 (579)
...++++.++++++.|++.|+++.+|+.+...... ++ .. ...+ ...+.|+.++++++
T Consensus 216 --------------~~~~~~~~l~~~~~~A~~~g~~v~~H~~~~~~~~~-~~---~~-~~~~----~~~~~H~~~~~~~~ 272 (406)
T PRK09356 216 --------------TGAFSVEQSERVLEAAKALGLPVKIHAEQLSNLGG-AE---LA-AEYG----ALSADHLEYLDEAG 272 (406)
T ss_pred --------------CCCCCHHHHHHHHHHHHHCCCCEEEEEecccCCCH-HH---HH-HHcC----CcEehHhhcCCHHH
Confidence 11257899999999999999999999974221111 11 11 1122 55789999999999
Q ss_pred HHHHhhCCcEEEecccccccchhHHHHhhChhhhhhhhhhHHHHHHCCCeeeecCCCCCCCCCHHHHHHHHHcccCCCCC
Q 008063 426 AARFGDQGIVASMQPQHLLDDADSARKKLGVDRAERESYLFQSLLANNALLALGSDWPVADINPLCAIRTAMKRIPPGWD 505 (579)
Q Consensus 426 ~~~~~~~~i~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD~~~~~~~~~~~~~~~~~~~~~~~~ 505 (579)
++++++.|+.+++||.++... +. ....+++.+.++|+++++|||+.. ..+++..++..+....
T Consensus 273 ~~~la~~g~~~~~~P~~~~~l--------~~----~~~~~~~~l~~~Gi~v~lgtD~~~-~~~~~~~~~~~~~~~~---- 335 (406)
T PRK09356 273 IAAMAEAGTVAVLLPGAFYFL--------RE----TQYPPARLLRDAGVPVALATDFNP-GSSPTESLLLAMNMAC---- 335 (406)
T ss_pred HHHHHHhCCEEEECccchhhc--------Cc----ccCchHHHHHHCCCeEEEeCCCCC-CCChhHHHHHHHHHHh----
Confidence 999999999999999987521 11 235688999999999999999742 1345556655543211
Q ss_pred CCCCCCCCCCHHHHHHHHcHHHHHhcccCCccccccCCCcccEEEeCCCCCC-ChhhccCCeEEEEEECCEEeCC
Q 008063 506 NAWIPSERISLTDALIAHTLSAARACFLENDVGSLSPGKIADFVILSTSSWE-DFAAEVSASIEATYVSGVQAYP 579 (579)
Q Consensus 506 ~~~~~~~~ls~~~al~~~T~npA~~lgl~~~~G~I~~G~~ADlvvld~~~~~-~~~~~~~~~v~~v~v~G~~v~~ 579 (579)
...+++++++++++|.|||+.+|+++++|+|++||.|||||+|.++++ ....+...+|..||++|++||.
T Consensus 336 ----~~~~l~~~~~l~~~T~~~A~~~g~~~~~G~i~~G~~AD~vvld~~~~~~~~~~~~~~~v~~v~v~G~~vy~ 406 (406)
T PRK09356 336 ----TLFRLTPEEALAAVTINAARALGRQDTHGSLEVGKKADLVIWDAPSPAELPYHFGVNPVETVVKNGEVVVD 406 (406)
T ss_pred ----hhcCCCHHHHHHHHHHHHHHHhCCCCCceeeCCCCcCCEEEECCCchhhhhhhhCCCCccEEEECCEEeeC
Confidence 234699999999999999999999888999999999999999999876 3333446699999999999983
|
|
| >TIGR03314 Se_ssnA putative selenium metabolism protein SsnA | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-34 Score=302.22 Aligned_cols=384 Identities=17% Similarity=0.174 Sum_probs=249.7
Q ss_pred EEEEcCeEEeCCCC--CCeeeEEEEECCEEEEecChHHHHhhccCCCeEEeCCCCeeecccccccccccccCcccccccc
Q 008063 47 LVVTNGVIFTGDDS--LLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHFIPGGLQMARVKL 124 (579)
Q Consensus 47 ~likn~~v~~~~~~--~~~~~~v~I~~GkI~~Ig~~~~~~~~~~~~~~viD~~g~~V~PG~ID~H~H~~~~~~~~~~~~~ 124 (579)
++|+|++|+++++. ...+++|+|+||+|++|++..+.... .++.++||++|++|+|||||+|+|+.+...+....+.
T Consensus 1 ~li~~~~i~t~~~~~~~~~~~~v~i~~g~I~~vg~~~~~~~~-~~~~~~id~~g~~v~PG~vd~H~H~~~~~~rg~~~d~ 79 (441)
T TIGR03314 1 LLIGNGTAVQLDPTRPIQEGGDIAIDGDVIKAVGPTEELKQK-YPEATFIDAKGKLIMPGFINTHNHFYSTFARGMMADI 79 (441)
T ss_pred CEEECCEEEecCCCCceEeccEEEEECCEEEEEcCchhhccc-CCCCeEEeCCCCEEecCeeecccchhhhhhccccccC
Confidence 47899999987543 33677999999999999986543321 2356899999999999999999998654321100000
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCCCeEEEeCCCCCCCCCCCCChHHhhhhCCCCeEEEEeCCCchhhhcHHHHHHcCCCCC
Q 008063 125 RGVSHKDEFVRRVKEAVKNSKKGSWILGGGWNNDLWGGDLPMASWIDDITPHNPVWLSRMDGHMGLANSVALQLVGITNL 204 (579)
Q Consensus 125 ~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~p~~~~ld~~~~~~p~~~~~~~~~~~~~n~~~~~~~g~~~~ 204 (579)
....+. .+|+...
T Consensus 80 ~~~~~~------------------------------------~~~l~~~------------------------------- 92 (441)
T TIGR03314 80 PPPPDF------------------------------------ISILKNL------------------------------- 92 (441)
T ss_pred CCCCCH------------------------------------HHHHHHH-------------------------------
Confidence 000111 1111110
Q ss_pred CCCCCCCeEEeCCCCCcCEEEhHhHHHHhcccCCCCCHHHHHHHHHHHHHHHHhcCccEEEeCCcCCCCCccccchHHHH
Q 008063 205 SEDPNGGTIMKTSSGEPTGLLIDAAMKLILPWIPEVSVDERREALLRASNLALSRGVTTVVDFGRYYPGESVQLSWEDFA 284 (579)
Q Consensus 205 ~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Git~v~~~~~~~~~~~~~~~~~~~~ 284 (579)
.......+++++++...+.+..+++++|+|++.|+........ ....
T Consensus 93 ----------------------------~~~~~~~~~~e~~~~~a~~~~~e~l~~GtTt~~d~~~~~~~~~-----~~~~ 139 (441)
T TIGR03314 93 ----------------------------WWRLDRALTLEDVYYSGLICSLDAIKSGCTTVIDHHASPNAIT-----GSLS 139 (441)
T ss_pred ----------------------------HHHhhhhCCHHHHHHHHHHHHHHHHHcCCeEEEeccccccccc-----chHH
Confidence 0001123556788888888888999999999999742111100 0112
Q ss_pred HHHHHHhhcCCCeeEEEEccCccc------hhh----HHHHHHhcCCCCCCceEEceEEEEEcCccCCCcccccCCCCCC
Q 008063 285 DVYQWASYSEKMKIRVCLFFPLET------WSS----LADLINKTGHVLSDWVYLGGVKAFADGSLGSNSALFHEPYADE 354 (579)
Q Consensus 285 ~~~~~~~~~~~~~i~v~~~~~~~~------~~~----~~~~~~~~~~~~~~~~~~~g~k~~~dg~~~~~~~~~~~~~~~~ 354 (579)
.+.+.+ .+.++|.+......+ ..+ ..++........... ++.. ...+.+
T Consensus 140 ~~~~a~---~~~GiR~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-----i~~~---------~~p~~~---- 198 (441)
T TIGR03314 140 TIRKAA---DEAGLRTMLCYETSDRDGGKEMQEGVEENIAFIKKSSGKEPYL-----VEAH---------IGAHAP---- 198 (441)
T ss_pred HHHHHH---HHhCCeEEEeeeeecCCCcccHHHHHHHHHHHHHHhccCCCCc-----eEEE---------EecCCC----
Confidence 223333 234566554321111 111 111111100000001 1110 111222
Q ss_pred CCCCcccCCCHHHHHHHHHHHHHCCCeEEEEecch-HHHHHHHHHH----HHHHHhcCCCCCCceEeeccCCChhhHHHH
Q 008063 355 PHNYGLQVMELESLLSMTMASDKSGLQVAIHAIGD-RANDLVLDMY----KSVVVTTGKRDQRFRIEHAQHLASGTAARF 429 (579)
Q Consensus 355 ~~~~~~~~~~~~~l~~~~~~a~~~g~~i~iH~~g~-~~~~~~~~~~----~~~~~~~~~~~~~~~i~H~~~~~~~~~~~~ 429 (579)
..++++.++++.+.|+++++++++|+.+. .+.....+.+ -+.....|..+.+..+.||.++++++++++
T Consensus 199 ------~t~s~~~l~~~~~lA~~~~~~i~~H~~E~~~e~~~~~~~~g~~~~~~l~~~G~l~~~~~~~H~~~~~~~d~~~l 272 (441)
T TIGR03314 199 ------FTVSDAGLEMCREAVQATGRGFHIHVAEDIYDVEDSHHKYGKDIVERLADFGLLGSKTLAAHCIYLSDREIELL 272 (441)
T ss_pred ------CCCCHHHHHHHHHHHHHcCCCEEEEcCCCHHHHHHHHHHcCCCHHHHHHHCCCCCCCeEEEEEecCCHHHHHHH
Confidence 33789999999999999999999999854 4444444433 234556788899999999999999999999
Q ss_pred hhCCcEEEecccccccchhHHHHhhChhhhhhhhhhHHHHHHCCCeeeecCCCCCCCCCHHHHHHHHHcccCCCCCCCCC
Q 008063 430 GDQGIVASMQPQHLLDDADSARKKLGVDRAERESYLFQSLLANNALLALGSDWPVADINPLCAIRTAMKRIPPGWDNAWI 509 (579)
Q Consensus 430 ~~~~i~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 509 (579)
++.|+.+++||.+|. .++ ...+|+..++++|+++++|||+. +.+++.+|+.+....... .
T Consensus 273 a~~g~~v~~cP~sn~--------~l~-----~G~~p~~~~~~~Gv~v~LGtD~~--~~d~~~em~~a~~~~~~~-----~ 332 (441)
T TIGR03314 273 NETDTFVVHNPESNM--------GNA-----VGYNPVLRMFKNGILLGLGTDGY--TSDMFESLKFANFKHKDA-----G 332 (441)
T ss_pred HHcCCcEEECHHHHh--------hhc-----cCCCCHHHHHHCCCEEEEcCCCC--CcCHHHHHHHHHHHhccc-----c
Confidence 999999999999986 333 45679999999999999999974 459999999886432110 0
Q ss_pred CCCCCCHHHHHHHHcHHHHHhcc--cCCccccccCCCcccEEEeCCCCCC--Chh----hc----cCCeEEEEEECCEEe
Q 008063 510 PSERISLTDALIAHTLSAARACF--LENDVGSLSPGKIADFVILSTSSWE--DFA----AE----VSASIEATYVSGVQA 577 (579)
Q Consensus 510 ~~~~ls~~~al~~~T~npA~~lg--l~~~~G~I~~G~~ADlvvld~~~~~--~~~----~~----~~~~v~~v~v~G~~v 577 (579)
........++++|+|.++|+.+| +..++|+|++||.|||+++|.+... +.. .+ ...+|..||++|++|
T Consensus 333 ~~~~~~~~~~~~~aT~~ga~al~~~l~~~~G~Le~G~~ADlvv~d~~~~~~~~~~~~~~~lv~~~~~~~V~~v~V~G~~v 412 (441)
T TIGR03314 333 GDLNAAWPESPAMLFENNNEIAERNFGAKFGRLEPGAKADLIIVDYNAPTPLTADNINGHILFGMNGGSVDSTMVNGKVV 412 (441)
T ss_pred CCCCccHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCcccEEEEcCCCCeeechhhccccceecCCCCeeEEEEECCEEE
Confidence 11123457899999999999997 4556899999999999999976421 111 11 256999999999998
Q ss_pred C
Q 008063 578 Y 578 (579)
Q Consensus 578 ~ 578 (579)
|
T Consensus 413 ~ 413 (441)
T TIGR03314 413 M 413 (441)
T ss_pred E
Confidence 6
|
Members of this protein family are found exclusively in genomes that contain putative set of labile selenium-dependent enzyme accessory proteins as well as homologs of a labile selenium-dependent purine hydroxylase. A mutant in this gene in Escherichia coli had improved stationary phase viability. The function is unknown. |
| >PRK08393 N-ethylammeline chlorohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-34 Score=300.76 Aligned_cols=379 Identities=18% Similarity=0.244 Sum_probs=246.0
Q ss_pred ccEEEEcCeEEeCCCCCCeeeEEEEECCEEEEecChHHHHhhccCCCeEEeCCCCeeecccccccccccccCcccccccc
Q 008063 45 ADLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHFIPGGLQMARVKL 124 (579)
Q Consensus 45 ~~~likn~~v~~~~~~~~~~~~v~I~~GkI~~Ig~~~~~~~~~~~~~~viD~~g~~V~PG~ID~H~H~~~~~~~~~~~~~ 124 (579)
|+++|+|++|+++.+.....++|+|+||+|++|++... .+..++||+.|++|+|||||+|+|+++....
T Consensus 1 ~~~~i~~~~i~~~~~~~~~~~~i~i~~g~I~~v~~~~~-----~~~~~~id~~~~~v~Pg~vd~H~H~~~~~~r------ 69 (424)
T PRK08393 1 MSILIKNGYVIYGENLKVIRADVLIEGNKIVEVKRNIN-----KPADTVIDASGSVVSPGFINAHTHSPMVLLR------ 69 (424)
T ss_pred CeEEEECcEEEeCCCCceecceEEEECCEEEEecCCCC-----CCCCeEEeCCCCEEccCeeeeccCcchHhhh------
Confidence 46899999999987654456789999999999987532 1345799999999999999999998654210
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCCCeEEEeCCCCCCCCCCCCChHHhhhhCCCCeEEEEeCCCchhhhcHHHHHHcCCCCC
Q 008063 125 RGVSHKDEFVRRVKEAVKNSKKGSWILGGGWNNDLWGGDLPMASWIDDITPHNPVWLSRMDGHMGLANSVALQLVGITNL 204 (579)
Q Consensus 125 ~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~p~~~~ld~~~~~~p~~~~~~~~~~~~~n~~~~~~~g~~~~ 204 (579)
+.. +..+..+|+....
T Consensus 70 -g~~---------------------------------~~~~l~~~l~~~~------------------------------ 85 (424)
T PRK08393 70 -GLA---------------------------------DDVPLMEWLQNYI------------------------------ 85 (424)
T ss_pred -hcc---------------------------------CCCCHHHHHHhhh------------------------------
Confidence 000 0112222322100
Q ss_pred CCCCCCCeEEeCCCCCcCEEEhHhHHHHhcccCCCCCHHHHHHHHHHHHHHHHhcCccEEEeCCcCCCCCccccchHHHH
Q 008063 205 SEDPNGGTIMKTSSGEPTGLLIDAAMKLILPWIPEVSVDERREALLRASNLALSRGVTTVVDFGRYYPGESVQLSWEDFA 284 (579)
Q Consensus 205 ~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Git~v~~~~~~~~~~~~~~~~~~~~ 284 (579)
.......++++++.....+...++++|+|++.++... . .
T Consensus 86 -----------------------------~~~~~~~~~~~~~~~a~~~~~e~l~~GvTtv~d~~~~---------~---~ 124 (424)
T PRK08393 86 -----------------------------WPRERKLKRKDIYWGAYLGLLEMIKSGTTTFVDMYFH---------M---E 124 (424)
T ss_pred -----------------------------ccccccCCHHHHHHHHHHHHHHHHhcCceEEeccccC---------H---H
Confidence 0001234567888888999999999999999997421 1 1
Q ss_pred HHHHHHhhcCCCeeEEEEccCc---cchhhHHHHHHhcCCCCCCceEEceEEEEEcCccCCCcccccCCCCCCCCCCccc
Q 008063 285 DVYQWASYSEKMKIRVCLFFPL---ETWSSLADLINKTGHVLSDWVYLGGVKAFADGSLGSNSALFHEPYADEPHNYGLQ 361 (579)
Q Consensus 285 ~~~~~~~~~~~~~i~v~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~g~k~~~dg~~~~~~~~~~~~~~~~~~~~~~~ 361 (579)
...+... ..++|....... .......+......... +++. ....+.+ ........+ .
T Consensus 125 ~~~~a~~---~~G~r~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~-----~~~~~~v-~~~~~p~~~----------~ 184 (424)
T PRK08393 125 EVAKATL---EVGLRGYLSYGMVDLGDEEKREKEIKETEKLM-EFIE-----KLNSPRV-HFVFGPHAP----------Y 184 (424)
T ss_pred HHHHHHH---HhCCeEEEeceEecCCCccchHHHHHHHHHHH-HHHh-----cCCCCce-EEEEeCCcC----------C
Confidence 2222222 223444332111 11000011110000000 0000 0000000 000011112 2
Q ss_pred CCCHHHHHHHHHHHHHCCCeEEEEecch-HHHHHHHHHH----HHHHHhcCCCCCCceEeeccCCChhhHHHHhhCCcEE
Q 008063 362 VMELESLLSMTMASDKSGLQVAIHAIGD-RANDLVLDMY----KSVVVTTGKRDQRFRIEHAQHLASGTAARFGDQGIVA 436 (579)
Q Consensus 362 ~~~~~~l~~~~~~a~~~g~~i~iH~~g~-~~~~~~~~~~----~~~~~~~~~~~~~~~i~H~~~~~~~~~~~~~~~~i~~ 436 (579)
.++++.++++++.|+++|+++++|+.+. .++....+.+ .......+..+.+..+.|+.++++++++++++.|+.+
T Consensus 185 ~~s~~~l~~~~~~A~~~g~~v~~H~~e~~~~~~~~~~~~g~~~~~~l~~~G~l~~~~~~~H~~~l~~~~l~~la~~g~~v 264 (424)
T PRK08393 185 TCSLALLKWVREKAREWNKLITIHLSETMDEIKQIREKYGKSPVVLLDEIGFLNEDVIAAHGVWLSSRDIRILASAGVTV 264 (424)
T ss_pred cCCHHHHHHHHHHHHHcCCcEEEEeCCCHHHHHHHHHHhCcCHHHHHHHcCCCCCCcEEEEeecCCHHHHHHHHhcCCEE
Confidence 3689999999999999999999999744 3334333322 2234556777889999999999999999999999999
Q ss_pred EecccccccchhHHHHhhChhhhhhhhhhHHHHHHCCCeeeecCCCCCC--CCCHHHHHHHHHcccCCCCCCCCCCCCCC
Q 008063 437 SMQPQHLLDDADSARKKLGVDRAERESYLFQSLLANNALLALGSDWPVA--DINPLCAIRTAMKRIPPGWDNAWIPSERI 514 (579)
Q Consensus 437 ~~~p~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 514 (579)
++||.++. .++ ...++++.+.++|+++++|||++.+ ..+++.+++.+....... . .....+
T Consensus 265 ~~~P~sn~--------~lg-----~g~~~~~~~~~~Gv~v~lGtD~~~~~~~~d~~~~~~~a~~~~~~~---~-~~~~~~ 327 (424)
T PRK08393 265 AHNPASNM--------KLG-----SGVMPLRKLLNAGVNVALGTDGAASNNNLDMLREMKLAALLHKVH---N-LDPTIA 327 (424)
T ss_pred EECHHHHH--------hhc-----cCCCCHHHHHHCCCcEEEecCCCccCCchhHHHHHHHHHHHHhhc---c-CCCCcC
Confidence 99998754 233 4466899999999999999998653 368998988764221100 0 011236
Q ss_pred CHHHHHHHHcHHHHHhcccCCccccccCCCcccEEEeCCCCC-----CCh-hhc----cCCeEEEEEECCEEeC
Q 008063 515 SLTDALIAHTLSAARACFLENDVGSLSPGKIADFVILSTSSW-----EDF-AAE----VSASIEATYVSGVQAY 578 (579)
Q Consensus 515 s~~~al~~~T~npA~~lgl~~~~G~I~~G~~ADlvvld~~~~-----~~~-~~~----~~~~v~~v~v~G~~v~ 578 (579)
+++++++++|.|||+.+|++ .|+|++||.||||++|.+.. .++ ..+ ...+|..|||+|++||
T Consensus 328 ~~~~al~~aT~~~A~~lg~~--~G~l~~G~~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~ 399 (424)
T PRK08393 328 DAETVFRMATQNGAKALGLK--AGVIKEGYLADIAVIDFNRPHLRPINNPISHLVYSANGNDVETTIVDGKIVM 399 (424)
T ss_pred CHHHHHHHHHHHHHHHhCCC--CCccCCCCccCEEEEeCCCCCcCCCCChHHHeeeeCCCCCeeEEEECCEEEE
Confidence 89999999999999999997 49999999999999998732 221 221 1458999999999986
|
|
| >cd01303 GDEase Guanine deaminase (GDEase) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=305.42 Aligned_cols=198 Identities=21% Similarity=0.226 Sum_probs=156.0
Q ss_pred CCHHHHHHHHHHHHHCC-CeEEEEecch-HHHHHHHHHH------HHHHHhcCCCCCCceEeeccCCChhhHHHHhhCCc
Q 008063 363 MELESLLSMTMASDKSG-LQVAIHAIGD-RANDLVLDMY------KSVVVTTGKRDQRFRIEHAQHLASGTAARFGDQGI 434 (579)
Q Consensus 363 ~~~~~l~~~~~~a~~~g-~~i~iH~~g~-~~~~~~~~~~------~~~~~~~~~~~~~~~i~H~~~~~~~~~~~~~~~~i 434 (579)
++++.++++.+.|+++| +++++|+.+. .++....+.+ .+.....|..+.+..+.||.++++++++++++.|+
T Consensus 205 ~s~e~l~~~~~~A~~~g~~~v~~H~~e~~~e~~~~~~~~g~~~~p~~~l~~~G~l~~~~~l~H~~~l~~~~~~~l~~~g~ 284 (429)
T cd01303 205 CSEELLAALGKLAKEHPDLHIQTHISENLDEIAWVKELFPGARDYLDVYDKYGLLTEKTVLAHCVHLSEEEFNLLKERGA 284 (429)
T ss_pred CCHHHHHHHHHHHHHCCCCeEEEeeCCCHHHHHHHHHHcCCCCCHHHHHHHCCCCCCCcEEEeCCCCCHHHHHHHHHcCC
Confidence 68899999999999999 9999999754 3344443332 23455667778899999999999999999999999
Q ss_pred EEEecccccccchhHHHHhhChhhhhhhhhhHHHHHHCCCeeeecCCCCCC-CCCHHHHHHHHHcccCCCCCCCCCCCCC
Q 008063 435 VASMQPQHLLDDADSARKKLGVDRAERESYLFQSLLANNALLALGSDWPVA-DINPLCAIRTAMKRIPPGWDNAWIPSER 513 (579)
Q Consensus 435 ~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 513 (579)
.+++||.++.. ++ ....+++.+.+.|+++++|||+..+ +.+++.+++.++....... .......+
T Consensus 285 ~v~~~P~sn~~--------l~-----~g~~~~~~~~~~Gv~v~lGtD~~~~~~~d~~~~~~~~~~~~~~~~-~~~~~~~~ 350 (429)
T cd01303 285 SVAHCPTSNLF--------LG-----SGLFDVRKLLDAGIKVGLGTDVGGGTSFSMLDTLRQAYKVSRLLG-YELGGHAK 350 (429)
T ss_pred EEEECccchhh--------hc-----cCCCCHHHHHHCCCeEEEeccCCCCCCccHHHHHHHHHHHHHhhc-cccCCcCC
Confidence 99999998752 23 4556899999999999999998653 5789999888765321100 01123457
Q ss_pred CCHHHHHHHHcHHHHHhcccCCccccccCCCcccEEEeCCCCCC-C-------------hhhcc----CCeEEEEEECC
Q 008063 514 ISLTDALIAHTLSAARACFLENDVGSLSPGKIADFVILSTSSWE-D-------------FAAEV----SASIEATYVSG 574 (579)
Q Consensus 514 ls~~~al~~~T~npA~~lgl~~~~G~I~~G~~ADlvvld~~~~~-~-------------~~~~~----~~~v~~v~v~G 574 (579)
++++++|+|+|.|||+.+|+++++|+|++||.|||||+|.++.. . +.++. ...|..|||+|
T Consensus 351 ~~~~~al~~aT~~gA~~lg~~~~~Gsle~Gk~ADlvvld~~~~~~~~p~~~~~~~~~d~~~~lV~~~~~~~V~~v~V~G 429 (429)
T cd01303 351 LSPAEAFYLATLGGAEALGLDDKIGNFEVGKEFDAVVIDPSATPLLADRMFRVESLEEALFKFLYLGDDRNIREVYVAG 429 (429)
T ss_pred CCHHHHHHHHhhHHHHHcCCCCCCcCcCCCCccCEEEEcCCCccccccccccccchhhHHHHHeeeCCCCCeeEEEeCC
Confidence 89999999999999999999988999999999999999988642 1 11221 56899999998
|
Guanine deaminase is an aminohydrolase responsible for the conversion of guanine to xanthine and ammonia, the first step to utilize guanine as a nitrogen source. This reaction also removes the guanine base from the pool and therefore can play a role in the regulation of cellular GTP and the guanylate nucleotide pool. |
| >PRK08418 chlorohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-34 Score=297.34 Aligned_cols=368 Identities=14% Similarity=0.175 Sum_probs=238.0
Q ss_pred EEEEcCeEEeCCCC--CCeeeEEEEECCEEEEecChHHHHhhccCCCeEEeCCCCeeecccccccccccccCcccccccc
Q 008063 47 LVVTNGVIFTGDDS--LLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHFIPGGLQMARVKL 124 (579)
Q Consensus 47 ~likn~~v~~~~~~--~~~~~~v~I~~GkI~~Ig~~~~~~~~~~~~~~viD~~g~~V~PG~ID~H~H~~~~~~~~~~~~~ 124 (579)
.+|+|++|+++++. ...+++|+|+ |+|++|++..+.... .++.++||+.|++|+|||||+|+|+.+....
T Consensus 2 ~~i~~~~v~t~~~~~~~~~~~~v~v~-~~I~~ig~~~~~~~~-~~~~~vid~~g~~v~PG~Vn~H~H~~~~~~r------ 73 (408)
T PRK08418 2 KIIGASYIFTCDENFEILEDGAVVFD-DKILEIGDYENLKKK-YPNAKIQFFKNSVLLPAFINPHTHLEFSANK------ 73 (408)
T ss_pred EEEEccEEEecCCCCceeeccEEEEC-CEEEEecCHHHHHhh-CCCCcEEecCCcEEccCccccccchhhhhhc------
Confidence 57899999988642 3467799999 999999986554321 2345699999999999999999998654321
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCCCeEEEeCCCCCCCCCCCCChHHhhhhCCCCeEEEEeCCCchhhhcHHHHHHcCCCCC
Q 008063 125 RGVSHKDEFVRRVKEAVKNSKKGSWILGGGWNNDLWGGDLPMASWIDDITPHNPVWLSRMDGHMGLANSVALQLVGITNL 204 (579)
Q Consensus 125 ~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~p~~~~ld~~~~~~p~~~~~~~~~~~~~n~~~~~~~g~~~~ 204 (579)
+... ..+...|+......
T Consensus 74 -g~~~---------------------------------~~~~~~wl~~~~~~---------------------------- 91 (408)
T PRK08418 74 -TTLD---------------------------------YGDFIPWLGSVINH---------------------------- 91 (408)
T ss_pred -cccC---------------------------------CCchHHHHHHHhhh----------------------------
Confidence 1000 01111233221100
Q ss_pred CCCCCCCeEEeCCCCCcCEEEhHhHHHHhcccCCCCCHHHHHHHHHHHHHHHHhcCccEEEeCCcCCCCCccccchHHHH
Q 008063 205 SEDPNGGTIMKTSSGEPTGLLIDAAMKLILPWIPEVSVDERREALLRASNLALSRGVTTVVDFGRYYPGESVQLSWEDFA 284 (579)
Q Consensus 205 ~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Git~v~~~~~~~~~~~~~~~~~~~~ 284 (579)
...+.+++.+...+.+..+++++|+|++.++..+ ..
T Consensus 92 --------------------------------~~~l~~~~~~~~~~~~~~E~l~~GtTtv~d~~~~----------~~-- 127 (408)
T PRK08418 92 --------------------------------REDLLEKCKGALIQQAINEMLKSGVGTIGAISSF----------GI-- 127 (408)
T ss_pred --------------------------------hhhcCHHHHHHHHHHHHHHHHhcCceEEEEeecc----------hh--
Confidence 0012335556667788889999999999987421 01
Q ss_pred HHHHHHhhcCCCeeEEEEccCccc-----hhh-HHHHHHhcCCCCCCceEEceEEEEEcCccCCCcccccCCCCCCCCCC
Q 008063 285 DVYQWASYSEKMKIRVCLFFPLET-----WSS-LADLINKTGHVLSDWVYLGGVKAFADGSLGSNSALFHEPYADEPHNY 358 (579)
Q Consensus 285 ~~~~~~~~~~~~~i~v~~~~~~~~-----~~~-~~~~~~~~~~~~~~~~~~~g~k~~~dg~~~~~~~~~~~~~~~~~~~~ 358 (579)
..+. ..+.++|......... ... ..+....... . .......++. ....+.|
T Consensus 128 -~~~a---~~~~GiR~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~---------~~aph~~-------- 184 (408)
T PRK08418 128 -DLEI---CAKSPLRVVFFNEILGSNASAVDELYQDFLARFEE-S-KKFKSKKFIP---------AIAIHSP-------- 184 (408)
T ss_pred -hHHH---HHhcCCeEEEEeeeeCCCccchhhhHHHHHHHHHh-h-hcccCCceeE---------EEeCCCC--------
Confidence 1111 2245566654221110 000 1111111000 0 0000000100 1112233
Q ss_pred cccCCCHHHHHHHHHHHHHCCCeEEEEecchH-HHHHHHHHHH--------------------HHHHhcCCCCCCceEee
Q 008063 359 GLQVMELESLLSMTMASDKSGLQVAIHAIGDR-ANDLVLDMYK--------------------SVVVTTGKRDQRFRIEH 417 (579)
Q Consensus 359 ~~~~~~~~~l~~~~~~a~~~g~~i~iH~~g~~-~~~~~~~~~~--------------------~~~~~~~~~~~~~~i~H 417 (579)
..++++.++++.+.|+++|+++++|+.+.. +.....+... +.....+ +.+..+.|
T Consensus 185 --~t~s~e~l~~~~~~A~~~~~~i~~H~~E~~~E~~~~~~~~G~~~~~~~~~~~~~~~~~~pv~~l~~~g--~~~~~~~H 260 (408)
T PRK08418 185 --YSVHPILAKKALQLAKKENLLVSTHFLESKAEREWLEESKGWFKKFFEKFLKEPKPLYTPKEFLELFK--GLRTLFTH 260 (408)
T ss_pred --CCCCHHHHHHHHHHHHHcCCeEEEEecCCHHHHHHHHhccCchhhhhhhhcccccccCCHHHHHHHhC--CCCeEEEe
Confidence 337899999999999999999999998543 3333332211 1111222 45889999
Q ss_pred ccCCChhhHHHHhhCCcEEEecccccccchhHHHHhhChhhhhhhhhhHHHHHHCCCeeeecCCCCCC--CCCHHHHHHH
Q 008063 418 AQHLASGTAARFGDQGIVASMQPQHLLDDADSARKKLGVDRAERESYLFQSLLANNALLALGSDWPVA--DINPLCAIRT 495 (579)
Q Consensus 418 ~~~~~~~~~~~~~~~~i~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD~~~~--~~~~~~~~~~ 495 (579)
|.++++++++++++.|+.+++||.++. +++ ...+|++.+++.|+++++|||+..+ ..+++.+|+.
T Consensus 261 ~~~~~~~di~~la~~g~~v~~cP~sn~--------~lg-----~g~~p~~~~~~~Gi~v~lGtD~~~~~~~~~~~~em~~ 327 (408)
T PRK08418 261 CVYASEEELEKIKSKNASITHCPFSNR--------LLS-----NKALDLEKAKKAGINYSIATDGLSSNISLSLLDELRA 327 (408)
T ss_pred cccCCHHHHHHHHHcCCcEEECHhHHH--------Hhc-----CCCccHHHHHhCCCeEEEeCCCCCCCCCcCHHHHHHH
Confidence 999999999999999999999999875 444 4456999999999999999997543 4789999998
Q ss_pred HHcccCCCCCCCCCCCCCCCHHHHHHHHcHHHHHhcccCCccccccCCCcccEEEeCCCC-CCCh----hh--ccCCeEE
Q 008063 496 AMKRIPPGWDNAWIPSERISLTDALIAHTLSAARACFLENDVGSLSPGKIADFVILSTSS-WEDF----AA--EVSASIE 568 (579)
Q Consensus 496 ~~~~~~~~~~~~~~~~~~ls~~~al~~~T~npA~~lgl~~~~G~I~~G~~ADlvvld~~~-~~~~----~~--~~~~~v~ 568 (579)
++..... .....+++++|+|+|.|+|+.||++ .|+|++||.||||++|.+. ..++ -. +....|.
T Consensus 328 ~~~~~~~-------~~~~~~~~~~l~~aT~~gA~alg~~--~G~l~~G~~ADlv~~d~~~~~~~~~~~~~~~~~~~~~v~ 398 (408)
T PRK08418 328 ALLTHAN-------MPLLELAKILLLSATRYGAKALGLN--NGEIKEGKDADLSVFELPEECTKKEQLPLQFILHAKEVK 398 (408)
T ss_pred HHHHhcc-------CCccccHHHHHHHHHHHHHHHhCCC--CccccCCCccCEEEEeCCCCCCChhHhHHHHHhccCccc
Confidence 7643211 0111357999999999999999996 6999999999999999862 2121 11 1355899
Q ss_pred EEEECCEEe
Q 008063 569 ATYVSGVQA 577 (579)
Q Consensus 569 ~v~v~G~~v 577 (579)
.|||+|++|
T Consensus 399 ~v~v~G~~v 407 (408)
T PRK08418 399 KLFIGGKEV 407 (408)
T ss_pred eEEECCEEc
Confidence 999999987
|
|
| >PRK07213 chlorohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-33 Score=289.83 Aligned_cols=358 Identities=21% Similarity=0.269 Sum_probs=236.7
Q ss_pred EEEEcCeEEeCCCCCCeeeEEEEECCEEEEecChHHHHhhccCCCeEEeCCCCeeecccccccccccccCccccccccCC
Q 008063 47 LVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHFIPGGLQMARVKLRG 126 (579)
Q Consensus 47 ~likn~~v~~~~~~~~~~~~v~I~~GkI~~Ig~~~~~~~~~~~~~~viD~~g~~V~PG~ID~H~H~~~~~~~~~~~~~~~ 126 (579)
++|+|++|+++.+....+++|+|++|+|.+|++.. ++.++||++|++| |||||+|+|+......
T Consensus 2 ~li~~~~v~~~~~~~~~~~~v~i~~g~I~~i~~~~-------~~~~~id~~g~~v-PGlvd~H~H~~~~~~r-------- 65 (375)
T PRK07213 2 LVYLNGNFLYGEDFEPKKGNLVIEDGIIKGFTNEV-------HEGNVIDAKGLVI-PPLINAHTHIGDSSIK-------- 65 (375)
T ss_pred EEEEeeEEEeCCCCceeeeEEEEECCEEEEeccCC-------CCCeEEeCCCCEe-cceeeeccccCchhhh--------
Confidence 68999999997654446778999999999998741 3457999999999 9999999998653210
Q ss_pred CCCHHHHHHHHHHHHHcCCCCCeEEEeCCCCCCCCCCCCChHHhhhhCCCCeEEEEeCCCchhhhcHHHHHHcCCCCCCC
Q 008063 127 VSHKDEFVRRVKEAVKNSKKGSWILGGGWNNDLWGGDLPMASWIDDITPHNPVWLSRMDGHMGLANSVALQLVGITNLSE 206 (579)
Q Consensus 127 ~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~p~~~~ld~~~~~~p~~~~~~~~~~~~~n~~~~~~~g~~~~~~ 206 (579)
|.++ ..+..+|+..
T Consensus 66 -------------------------g~~~-------~~~l~~~~~~---------------------------------- 79 (375)
T PRK07213 66 -------------------------DIGI-------GKSLDELVKP---------------------------------- 79 (375)
T ss_pred -------------------------cCCC-------CCCHHHHccC----------------------------------
Confidence 0000 0011111100
Q ss_pred CCCCCeEEeCCCCCcCEEEhHhHHHHhcccCCCCCHHHHHHHHHHHHHHHHhcCccEEEeCCcCCCCCccccchHHHHHH
Q 008063 207 DPNGGTIMKTSSGEPTGLLIDAAMKLILPWIPEVSVDERREALLRASNLALSRGVTTVVDFGRYYPGESVQLSWEDFADV 286 (579)
Q Consensus 207 ~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Git~v~~~~~~~~~~~~~~~~~~~~~~ 286 (579)
|.| +. .......++++.+...+.....++++|+|++.|+... + .... ..
T Consensus 80 -~~~-------------~~--------~~~~~~~~~~~~~~~a~~~~~e~l~~G~Ttv~D~~~~--~------~~~~-~~ 128 (375)
T PRK07213 80 -PNG-------------LK--------HKFLNSCSDKELVEGMKEGLYDMYNNGIKAFCDFREG--G------IKGI-NL 128 (375)
T ss_pred -CCc-------------ch--------HHHHhcCCHHHHHHHHHHHHHHHHHcCCeEEEEhhhc--C------hhHH-HH
Confidence 000 00 0011245678888999999999999999999996321 1 1111 12
Q ss_pred HHHHhhcCCCeeEEEEccCccc--hhhHHHHHHhcCCCCCCceEEceEEEEEcCccCCCcccccCCCCCCCCCCcccCCC
Q 008063 287 YQWASYSEKMKIRVCLFFPLET--WSSLADLINKTGHVLSDWVYLGGVKAFADGSLGSNSALFHEPYADEPHNYGLQVME 364 (579)
Q Consensus 287 ~~~~~~~~~~~i~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~g~k~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (579)
..++. ..++++......... .+...+.... +++ . .+| ... .+...++
T Consensus 129 ~~~a~--~~~~~r~~~~~~~~~~~~~~~~~~~~~-------~~~-----~-~~g------~~~----------~~~~~~s 177 (375)
T PRK07213 129 LKKAS--SDLPIKPIILGRPTEADENELKKEIRE-------ILK-----N-SDG------IGL----------SGANEYS 177 (375)
T ss_pred HHHHH--HcCCCceEEecCCCcccchhhHHHHHH-------HHH-----h-ccc------ccc----------cccccCC
Confidence 22221 345555543221110 1111111110 000 0 000 001 1122368
Q ss_pred HHHHHHHHHHHHHCCCeEEEEecchH-HHHHHHHHH----HHHHHhcCCCCCCceEeeccCCChhhHHHHhhCCcEEEec
Q 008063 365 LESLLSMTMASDKSGLQVAIHAIGDR-ANDLVLDMY----KSVVVTTGKRDQRFRIEHAQHLASGTAARFGDQGIVASMQ 439 (579)
Q Consensus 365 ~~~l~~~~~~a~~~g~~i~iH~~g~~-~~~~~~~~~----~~~~~~~~~~~~~~~i~H~~~~~~~~~~~~~~~~i~~~~~ 439 (579)
++.++++++.|+++|+++++|+.+.. +.....+.+ -+...+.|.. .+ .+.|+.++++++++++++.|+.+++|
T Consensus 178 ~~~l~~~~~~A~~~g~~v~~H~~e~~~e~~~~~~~~G~~~v~~~~~~G~~-~~-~i~H~~~~~~~~i~~la~~g~~v~~~ 255 (375)
T PRK07213 178 DEELKFICKECKREKKIFSIHAAEHKGSVEYSLEKYGMTEIERLINLGFK-PD-FIVHATHPSNDDLELLKENNIPVVVC 255 (375)
T ss_pred HHHHHHHHHHHHHcCCEEEEeeCCchhHHHHHHHHcCCChHHHHHhcCCC-CC-EEEECCCCCHHHHHHHHHcCCcEEEC
Confidence 89999999999999999999997543 333333322 1223334543 33 68999999999999999999999999
Q ss_pred ccccccchhHHHHhhChhhhhhhhhhHHHHHHCCCeeeecCCCCCC-CCCHHHHHHHHHcccCCCCCCCCCCCCCCCHHH
Q 008063 440 PQHLLDDADSARKKLGVDRAERESYLFQSLLANNALLALGSDWPVA-DINPLCAIRTAMKRIPPGWDNAWIPSERISLTD 518 (579)
Q Consensus 440 p~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~ 518 (579)
|.++.. ++ ...+|++.++++|+++++|||+... ..+++.+++.+... .++++++
T Consensus 256 P~sn~~--------l~-----~g~~~v~~l~~~Gv~v~lGTD~~~~~~~~~~~e~~~~~~~------------~~~~~~~ 310 (375)
T PRK07213 256 PRANAS--------FN-----VGLPPLNEMLEKGILLGIGTDNFMANSPSIFREMEFIYKL------------YHIEPKE 310 (375)
T ss_pred Ccchhh--------hc-----cCCccHHHHHHCCCEEEEeeCCCCCchHhHHHHHHHHHHH------------hCcCHHH
Confidence 998862 23 4566899999999999999997533 36788888877532 2489999
Q ss_pred HHHHHcHHHHHhcccCCccccccCCCcccEEEeCCCC---CC-Chhhcc----CCeEEEEEECCEE
Q 008063 519 ALIAHTLSAARACFLENDVGSLSPGKIADFVILSTSS---WE-DFAAEV----SASIEATYVSGVQ 576 (579)
Q Consensus 519 al~~~T~npA~~lgl~~~~G~I~~G~~ADlvvld~~~---~~-~~~~~~----~~~v~~v~v~G~~ 576 (579)
+++++|.|+|+.||+++ +|+|+|||.||||++|.+. .. +...+. ...|..|||+||+
T Consensus 311 ~l~~aT~~gA~~lg~~~-~G~l~~G~~ADlvv~d~~~~~p~~dp~~~lV~~~~~~~v~~v~v~G~~ 375 (375)
T PRK07213 311 ILKMATINGAKILGLIN-VGLIEEGFKADFTFIKPTNIKFSKNPYASIITRCESGDIVNKILKGKL 375 (375)
T ss_pred HHHHHHHHHHHHhCCCC-cCCcCCCCcccEEEEcCccccccCCchHHHhhhccCCCceEEEECCcC
Confidence 99999999999999986 8999999999999998652 22 233332 5589999999984
|
|
| >cd01293 Bact_CD Bacterial cytosine deaminase and related metal-dependent hydrolases | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-33 Score=297.73 Aligned_cols=378 Identities=20% Similarity=0.199 Sum_probs=232.7
Q ss_pred EEEcCeEEeCCCCCCeeeEEEEECCEEEEecChHHHHhhccCCCeEEeCCCCeeecccccccccccccCccccccccCCC
Q 008063 48 VVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHFIPGGLQMARVKLRGV 127 (579)
Q Consensus 48 likn~~v~~~~~~~~~~~~v~I~~GkI~~Ig~~~~~~~~~~~~~~viD~~g~~V~PG~ID~H~H~~~~~~~~~~~~~~~~ 127 (579)
+|+|++|+|+. ....+|+|+||+|++|++..+. +++.++||++|++|+|||||+|+|++..............
T Consensus 1 ~~~~~~~~~~~---~~~~~v~I~~g~I~~Vg~~~~~----~~~~~vID~~g~~v~PGlId~H~H~~~~~~~~~~~~~~~~ 73 (398)
T cd01293 1 LLRNARLADGG---TALVDIAIEDGRIAAIGPALAV----PPDAEEVDAKGRLVLPAFVDPHIHLDKTFTGGRWPNNSGG 73 (398)
T ss_pred CeeeeEEeCCC---ceEEEEEEECCEEEEEecCCCC----CCCCceEeCCCCEEccCEeeeeeccCcccccCCCCCCCcc
Confidence 47899999973 3677999999999999986442 2567899999999999999999998542110000000000
Q ss_pred CCHHHHHHHHHHHHHcCCCCCeEEEeCCCCCCCCCCCCChHHhhhhCCCCeEEEEeCCCchhhhcHHHHHHcCCCCCCCC
Q 008063 128 SHKDEFVRRVKEAVKNSKKGSWILGGGWNNDLWGGDLPMASWIDDITPHNPVWLSRMDGHMGLANSVALQLVGITNLSED 207 (579)
Q Consensus 128 ~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~p~~~~ld~~~~~~p~~~~~~~~~~~~~n~~~~~~~g~~~~~~~ 207 (579)
.++.
T Consensus 74 ----------------------------------------~~~~------------------------------------ 77 (398)
T cd01293 74 ----------------------------------------TLLE------------------------------------ 77 (398)
T ss_pred ----------------------------------------ccHH------------------------------------
Confidence 0000
Q ss_pred CCCCeEEeCCCCCcCEEEhHhHHHHhcccCCCCCHHHHHHHHHHHHHHHHhcCccEEEeCCcCCCCCccccchHHHHHHH
Q 008063 208 PNGGTIMKTSSGEPTGLLIDAAMKLILPWIPEVSVDERREALLRASNLALSRGVTTVVDFGRYYPGESVQLSWEDFADVY 287 (579)
Q Consensus 208 ~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Git~v~~~~~~~~~~~~~~~~~~~~~~~ 287 (579)
..... .......++++........+..++++|+|++.+++...+. .....++...+..
T Consensus 78 --------------------~~~~~-~~~~~~~t~~~~~~~~~~~~~~~l~~GvTtv~~~~~~~~~-~~~~~~~~~~~~~ 135 (398)
T cd01293 78 --------------------AIIAW-EERKLLLTAEDVKERAERALELAIAHGTTAIRTHVDVDPA-AGLKALEALLELR 135 (398)
T ss_pred --------------------HHHHH-HHHHhccChHHHHHHHHHHHHHHHHcChhheeeeeccccc-ccchHHHHHHHHH
Confidence 00000 0011234567888888889999999999999876532111 0111122222222
Q ss_pred HHHhhcCCCeeEEEEccCccch--hhHHHHHHhcCCCCCCceEEceEEEEEcCccCCCcccccCCCCCCCCCCcccCCCH
Q 008063 288 QWASYSEKMKIRVCLFFPLETW--SSLADLINKTGHVLSDWVYLGGVKAFADGSLGSNSALFHEPYADEPHNYGLQVMEL 365 (579)
Q Consensus 288 ~~~~~~~~~~i~v~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~k~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (579)
+... ..+......+.....+ ++..+..+.......+. . + + . +.. ....+++
T Consensus 136 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~--------~--~---~----~--~~~------~~~~~s~ 188 (398)
T cd01293 136 EEWA--DLIDLQIVAFPQHGLLSTPGGEELMREALKMGADV--------V--G---G----I--PPA------EIDEDGE 188 (398)
T ss_pred HHhh--ccceEEEEeccCccccCCCCHHHHHHHHHHhCCCE--------E--e---C----C--CCC------cCCccHH
Confidence 2221 1121221111111000 11112211110000000 0 0 0 0 000 0122678
Q ss_pred HHHHHHHHHHHHCCCeEEEEecchH-----HHHHHHHHHHHHHHhcCCCCCCceEeeccCCCh-------hhHHHHhhCC
Q 008063 366 ESLLSMTMASDKSGLQVAIHAIGDR-----ANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLAS-------GTAARFGDQG 433 (579)
Q Consensus 366 ~~l~~~~~~a~~~g~~i~iH~~g~~-----~~~~~~~~~~~~~~~~~~~~~~~~i~H~~~~~~-------~~~~~~~~~~ 433 (579)
+.++++++.|+++|+++.+|+.+.. .+...++. ....+.. .+..+.|+.++++ +.++++++.|
T Consensus 189 e~l~~~~~~A~~~g~~v~~H~~e~~~~~~~~~~~~~~~----~~~~g~~-~~~~i~H~~~~~~~~~~~~~~~~~~l~~~g 263 (398)
T cd01293 189 ESLDTLFELAQEHGLDIDLHLDETDDPGSRTLEELAEE----AERRGMQ-GRVTCSHATALGSLPEAEVSRLADLLAEAG 263 (398)
T ss_pred HHHHHHHHHHHHhCCCCEEEeCCCCCcchhHHHHHHHH----HHHhCCC-CCEEeeecchhhcCCHHHHHHHHHHHHHcC
Confidence 9999999999999999999997331 22222222 2234443 5789999998763 4589999999
Q ss_pred cEEEecccccccchhHHHHhhChhhhhhhhhhHHHHHHCCCeeeecCCCCC------CCCCHHHHHHHHHcccCCCCCCC
Q 008063 434 IVASMQPQHLLDDADSARKKLGVDRAERESYLFQSLLANNALLALGSDWPV------ADINPLCAIRTAMKRIPPGWDNA 507 (579)
Q Consensus 434 i~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD~~~------~~~~~~~~~~~~~~~~~~~~~~~ 507 (579)
+.+++||.++...... ...++ +. ...++++.++++|+++++|||.+. ...++++.++.+..+...
T Consensus 264 ~~v~~~p~s~~~l~~~-~~~~~--~~-~~~~~~~~~~~~Gv~v~lGTD~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 334 (398)
T cd01293 264 ISVVSLPPINLYLQGR-EDTTP--KR-RGVTPVKELRAAGVNVALGSDNVRDPWYPFGSGDMLEVANLAAHIAQL----- 334 (398)
T ss_pred CeEEeCCCcchhhccc-ccCCC--CC-CCCCcHHHHHHCCCeEEECCCCCCCCCcCCCCCCHHHHHHHHHHHHcC-----
Confidence 9999999987532111 00111 11 456789999999999999999742 235788888876543211
Q ss_pred CCCCCCCCHHHHHHHHcHHHHHhcccCCccccccCCCcccEEEeCCCCCCChhhccCCeEEEEEECCEEe
Q 008063 508 WIPSERISLTDALIAHTLSAARACFLENDVGSLSPGKIADFVILSTSSWEDFAAEVSASIEATYVSGVQA 577 (579)
Q Consensus 508 ~~~~~~ls~~~al~~~T~npA~~lgl~~~~G~I~~G~~ADlvvld~~~~~~~~~~~~~~v~~v~v~G~~v 577 (579)
....+.+++|+++|.|+|+++|+ ..|+|+|||.||||++|.|++.++... ..++..||++|++|
T Consensus 335 ---~~~~~~~~al~~aT~~~A~~lg~--~~G~l~~Gk~ADlv~~d~~~~~~~~~~-~~~~~~v~~~G~~~ 398 (398)
T cd01293 335 ---GTPEDLALALDLITGNAARALGL--EDYGIKVGCPADLVLLDAEDVAEAVAR-QPPRRVVIRKGRVV 398 (398)
T ss_pred ---CChhhHHHHHHhcChhhhhhcCC--cCcccccCCcceEEEECCCCHHHHHhc-CCCccEEEECCEEC
Confidence 01135689999999999999999 379999999999999999998754333 34899999999975
|
Cytosine deaminases (CDs) catalyze the deamination of cytosine, producing uracil and ammonia. They play an important role in pyrimidine salvage. CDs are present in prokaryotes and fungi, but not mammalian cells. The bacterial enzymes, but not the fungal enzymes, are related to the adenosine deaminases (ADA). The bacterial enzymes are iron dependent and hexameric. |
| >TIGR02967 guan_deamin guanine deaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-33 Score=291.86 Aligned_cols=193 Identities=24% Similarity=0.328 Sum_probs=154.2
Q ss_pred CCCHHHHHHHHHHHHHC-CCeEEEEecch-HHHHHHHHHH------HHHHHhcCCCCCCceEeeccCCChhhHHHHhhCC
Q 008063 362 VMELESLLSMTMASDKS-GLQVAIHAIGD-RANDLVLDMY------KSVVVTTGKRDQRFRIEHAQHLASGTAARFGDQG 433 (579)
Q Consensus 362 ~~~~~~l~~~~~~a~~~-g~~i~iH~~g~-~~~~~~~~~~------~~~~~~~~~~~~~~~i~H~~~~~~~~~~~~~~~~ 433 (579)
.++++.++++++.|+++ |+++++|+.+. .+.+...+.+ .+...+.|..+.+..+.||.++++++++++++.|
T Consensus 182 ~~s~e~l~~~~~~A~~~~g~~v~~H~~e~~~~~~~~~~~~~~~~~~~~~l~~~g~lg~~~~~~H~~~~~~~~~~~l~~~g 261 (401)
T TIGR02967 182 TSSPEQLAAAGELAKEYPDVYVQTHLSENKDEIAWVKELFPEAKDYLDVYDHYGLLGRRSVFAHCIHLSDEECQRLAETG 261 (401)
T ss_pred cCcHHHHHHHHHHHHhCCCCeeEEEECCCchHHHHHHHHcCCCCcHHHHHHHCCCCCCCeEEEecccCCHHHHHHHHHcC
Confidence 37889999999999999 99999999744 4455555432 2345567778889999999999999999999999
Q ss_pred cEEEecccccccchhHHHHhhChhhhhhhhhhHHHHHHCCCeeeecCCCCCC-CCCHHHHHHHHHcccCCCCCCCCCCCC
Q 008063 434 IVASMQPQHLLDDADSARKKLGVDRAERESYLFQSLLANNALLALGSDWPVA-DINPLCAIRTAMKRIPPGWDNAWIPSE 512 (579)
Q Consensus 434 i~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 512 (579)
+.+++||.++. .++ ...++++.+.++|+++++|||+... ..+++..++.++..... ...
T Consensus 262 ~~v~~~P~~~~--------~~~-----~g~~~~~~~~~~Gv~v~lGtD~~~~~~~~~~~~~~~~~~~~~~-------~~~ 321 (401)
T TIGR02967 262 AAIAHCPTSNL--------FLG-----SGLFNLKKALEHGVRVGLGTDVGGGTSFSMLQTLREAYKVSQL-------QGA 321 (401)
T ss_pred CeEEEChHHHH--------Hhc-----cCCCCHHHHHHCCCeEEEecCCCCCCCcCHHHHHHHHHHHhhh-------cCC
Confidence 99999999864 223 4456899999999999999997643 46889888877653211 124
Q ss_pred CCCHHHHHHHHcHHHHHhcccCCccccccCCCcccEEEeCCCCCC--------------Chhhcc----CCeEEEEEECC
Q 008063 513 RISLTDALIAHTLSAARACFLENDVGSLSPGKIADFVILSTSSWE--------------DFAAEV----SASIEATYVSG 574 (579)
Q Consensus 513 ~ls~~~al~~~T~npA~~lgl~~~~G~I~~G~~ADlvvld~~~~~--------------~~~~~~----~~~v~~v~v~G 574 (579)
+++++++|+|+|.|||+.||+++++|+|++||.||||++|.+... ++.++. ..+|..|||+|
T Consensus 322 ~~~~~~~l~~aT~~~A~~lg~~~~~G~i~~G~~ADlvi~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~v~v~G 401 (401)
T TIGR02967 322 RLSPFEAFYLATLGGARALDLDDRIGNFEPGKEADFVVLDPAATPLLALRFEGADTLEDKLFKLMYLGDDRNVAETYVAG 401 (401)
T ss_pred CCCHHHHHHHHHHHHHHHhCCcCCccccCCCCccCEEEEcCCCCcccccccccccchhhHHHHheeecCccceeEEEeCC
Confidence 689999999999999999999988999999999999999976322 122222 55899999998
|
This model describes guanine deaminase, which hydrolyzes guanine to xanthine and ammonia. Xanthine can then be converted to urate by xanthine dehydrogenase, and urate subsequently degraded. In some bacteria, the guanine deaminase gene is found near the xdhABC genes for xanthine dehydrogenase. Non-homologous forms of guanine deaminase also exist, as well as distantly related forms outside the scope of this model. |
| >PRK09229 N-formimino-L-glutamate deiminase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-33 Score=295.32 Aligned_cols=200 Identities=22% Similarity=0.212 Sum_probs=154.8
Q ss_pred CCCHHHHHHHHHHHHHCCCeEEEEecch-HHHHHHHHHHH----HHHHhcCCCCCCceEeeccCCChhhHHHHhhCCcEE
Q 008063 362 VMELESLLSMTMASDKSGLQVAIHAIGD-RANDLVLDMYK----SVVVTTGKRDQRFRIEHAQHLASGTAARFGDQGIVA 436 (579)
Q Consensus 362 ~~~~~~l~~~~~~a~~~g~~i~iH~~g~-~~~~~~~~~~~----~~~~~~~~~~~~~~i~H~~~~~~~~~~~~~~~~i~~ 436 (579)
.++++.++++++.| ++|+++++|+.+. .++....+.+. +...+.+..+.++.+.||.++++++++++++.|+.+
T Consensus 212 ~~s~e~l~~~~~~A-~~g~~i~~H~~e~~~e~~~~~~~~g~~~~~~l~~~g~l~~~~~l~H~~~l~~~d~~~la~~g~~v 290 (456)
T PRK09229 212 AVTPDQLAAVLALA-APDGPVHIHIAEQTKEVDDCLAWSGARPVEWLLDHAPVDARWCLVHATHLTDAETARLARSGAVA 290 (456)
T ss_pred CCCHHHHHHHHHHh-cCCCceEEEeCCCHHHHHHHHHHcCCCHHHHHHHcCCCCCCeEEEeeccCCHHHHHHHHHcCCeE
Confidence 37899999999999 9999999999743 44444444332 234456778889999999999999999999999999
Q ss_pred EecccccccchhHHHHhhChhhhhhhhhhHHHHHHCCCeeeecCCCCCCCCCHHHHHHHHHccc--CCCCCCCC-CCCCC
Q 008063 437 SMQPQHLLDDADSARKKLGVDRAERESYLFQSLLANNALLALGSDWPVADINPLCAIRTAMKRI--PPGWDNAW-IPSER 513 (579)
Q Consensus 437 ~~~p~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~ 513 (579)
++||.++. .++ ...+|++.++++|+++++|||+.. ..+++..++.+.... .......+ ..+..
T Consensus 291 ~~~P~sn~--------~lg-----~g~~p~~~l~~~Gv~v~lGtD~~~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (456)
T PRK09229 291 GLCPTTEA--------NLG-----DGIFPAVDYLAAGGRFGIGSDSHV-SIDLVEELRLLEYGQRLRDRRRNVLAAAAQP 356 (456)
T ss_pred EECchhhh--------hhc-----CCCCCHHHHHHCCCeEEEecCCCC-CCCHHHHHHHHHHHHHHhhcCCccccccccc
Confidence 99999764 334 556699999999999999999743 468888887765321 10001111 12257
Q ss_pred CCHHHHHHHHcHHHHHhcccCCccccccCCCcccEEEeCCCCCC--C--hhhc--------cCCeEEEEEECCEEeC
Q 008063 514 ISLTDALIAHTLSAARACFLENDVGSLSPGKIADFVILSTSSWE--D--FAAE--------VSASIEATYVSGVQAY 578 (579)
Q Consensus 514 ls~~~al~~~T~npA~~lgl~~~~G~I~~G~~ADlvvld~~~~~--~--~~~~--------~~~~v~~v~v~G~~v~ 578 (579)
++.+++|+|+|.|+|+++|+ + +|+|++||.|||||+|.+.+. + ..++ ...+|..|||+|++||
T Consensus 357 ~~~~~~l~~aT~~gA~alg~-~-~GsLe~Gk~ADlvvld~~~~~~~~~~~~~~~~~lv~~~~~~~V~~v~V~G~~v~ 431 (456)
T PRK09229 357 SVGRRLFDAALAGGAQALGR-A-IGGLAVGARADLVVLDLDHPALAGREGDALLDRWVFAGGDAAVRDVWVAGRWVV 431 (456)
T ss_pred chHHHHHHHHHHHHHHHhCC-C-cCCcCCCCccCEEEEeCCCccccCCChhhHHHHHhhcCCCCCeeEEEECCEEEE
Confidence 89999999999999999999 3 899999999999999987632 1 1121 2468999999999987
|
|
| >COG1228 HutI Imidazolonepropionase and related amidohydrolases [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-35 Score=300.01 Aligned_cols=182 Identities=25% Similarity=0.292 Sum_probs=142.1
Q ss_pred cCCCHHHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhcCCCCCCceEeeccCCChhhHHHHhh--CCcE-EE
Q 008063 361 QVMELESLLSMTMASDKSGLQVAIHAIGDRANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLASGTAARFGD--QGIV-AS 437 (579)
Q Consensus 361 ~~~~~~~l~~~~~~a~~~g~~i~iH~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~H~~~~~~~~~~~~~~--~~i~-~~ 437 (579)
..++++++++++..|.+.|+++.+|+++...+...++.. ...+.|+.+++++....+++ .|+. ..
T Consensus 215 ~~fs~~e~~~~l~~a~~~g~~v~~HA~~~~g~~~A~~~g------------~~s~~H~~~ld~~~~~~~a~~~~g~~~~~ 282 (406)
T COG1228 215 GQFSPEEIRAVLAAALKAGIPVKAHAHGADGIKLAIRLG------------AKSAEHGTLLDHETAALLAEKGAGTPVPV 282 (406)
T ss_pred cccCHHHHHHHHHHHHHCCCceEEEecccchHHHHHHhC------------cceehhhhhcCHhHHHHHhhccCCCcccc
Confidence 347899999999999999999999998766555444432 45899999999999999999 6663 34
Q ss_pred ecccccccchhHHHHhhChhhhhhhhhhHHHHHHCCCeeeecCCCCCCC--CCHHHHHHHHHcccCCCCCCCCCCCCCCC
Q 008063 438 MQPQHLLDDADSARKKLGVDRAERESYLFQSLLANNALLALGSDWPVAD--INPLCAIRTAMKRIPPGWDNAWIPSERIS 515 (579)
Q Consensus 438 ~~p~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ls 515 (579)
+.|.... .+.. ....+++.+.+.|++++++||.+..+ .+....|..++. .++|
T Consensus 283 l~p~~~~--------~l~e----~~~~~~~~l~~~GV~vai~TD~~~~~~~~~l~~~m~l~~~-------------~gmt 337 (406)
T COG1228 283 LLPRTKF--------ELRE----LDYKPARKLIDAGVKVAIGTDHNPGTSHGSLALEMALAVR-------------LGMT 337 (406)
T ss_pred ccchhhh--------hhhc----ccchhHHHHHHCCCEEEEEcCCCCCchhhHHHHHHHHHHH-------------cCCC
Confidence 4444332 1111 33456899999999999999987666 344445544443 3499
Q ss_pred HHHHHHHHcHHHHHhcccCCccccccCCCcccEEEeCCCCCCChh-hccCCeEEEEEECCEEeCC
Q 008063 516 LTDALIAHTLSAARACFLENDVGSLSPGKIADFVILSTSSWEDFA-AEVSASIEATYVSGVQAYP 579 (579)
Q Consensus 516 ~~~al~~~T~npA~~lgl~~~~G~I~~G~~ADlvvld~~~~~~~~-~~~~~~v~~v~v~G~~v~~ 579 (579)
++|||+++|.|||+.||+++++|+||+||.|||||||+||+.++. ...-.++..||++|+++++
T Consensus 338 p~EaL~a~T~naA~alG~~~~~Gsle~Gk~ADlvv~~~dp~~~i~y~~~~~~v~~v~k~G~~~~~ 402 (406)
T COG1228 338 PEEALKAATINAAKALGLADKVGSLEPGKDADLVVWDGDPLADIPYFLGLNKVEAVIKDGKVVYE 402 (406)
T ss_pred HHHHHHHHHHHHHHHcCCccccccccCCCccCEEEEcCCChhhccccccCCceEEEEECCEEeec
Confidence 999999999999999999999999999999999999999987531 1124599999999999974
|
|
| >cd01313 Met_dep_hydrolase_E Metallo-dependent hydrolases, subgroup D is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-32 Score=286.23 Aligned_cols=196 Identities=23% Similarity=0.272 Sum_probs=149.4
Q ss_pred CCHHHHHHHHHHHHHCCCeEEEEecch-HHHHHHHHHH----HHHHHhcCCCCCCceEeeccCCChhhHHHHhhCCcEEE
Q 008063 363 MELESLLSMTMASDKSGLQVAIHAIGD-RANDLVLDMY----KSVVVTTGKRDQRFRIEHAQHLASGTAARFGDQGIVAS 437 (579)
Q Consensus 363 ~~~~~l~~~~~~a~~~g~~i~iH~~g~-~~~~~~~~~~----~~~~~~~~~~~~~~~i~H~~~~~~~~~~~~~~~~i~~~ 437 (579)
++++.+++.++.|++ |+++++|+.+. .+.....+.+ .+.....+..+.+..+.||.++++++++++++.|+.++
T Consensus 204 ~s~e~l~~~~~~a~~-g~~i~~H~~e~~~e~~~~~~~~g~~~i~~l~~~g~l~~~~~~~H~~~l~~~~~~~la~~g~~v~ 282 (418)
T cd01313 204 VPAEQLAALAALASE-KAPVHIHLAEQPKEVDDCLAAHGRRPVELLLDHGHLDARWCLVHATHLTDNETLLLGRSGAVVG 282 (418)
T ss_pred CCHHHHHHHHHHHhc-CCceEEEeCCCHHHHHHHHHHcCCCHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHHcCCEEE
Confidence 789999999999999 99999999643 3333333221 12344467778899999999999999999999999999
Q ss_pred ecccccccchhHHHHhhChhhhhhhhhhHHHHHHCCCeeeecCCCCCCCCCHHHHHHHHHcc--cCCCCCCCCCCCCCCC
Q 008063 438 MQPQHLLDDADSARKKLGVDRAERESYLFQSLLANNALLALGSDWPVADINPLCAIRTAMKR--IPPGWDNAWIPSERIS 515 (579)
Q Consensus 438 ~~p~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ls 515 (579)
+||.++. +++ ...+|++.+.++|+++++|||+.. ..+++..++.+... ........+.....++
T Consensus 283 ~~P~sn~--------~lg-----~g~~p~~~l~~~Gv~v~lGtD~~~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (418)
T cd01313 283 LCPTTEA--------NLG-----DGIFPAAALLAAGGRIGIGSDSNA-RIDLLEELRQLEYSQRLRDRARNVLATAGGSS 348 (418)
T ss_pred ECCCchh--------hcc-----CCCCCHHHHHHCCCcEEEecCCCC-CcCHHHHHHHHHHHHHHHhcccccccccCCCC
Confidence 9999876 233 456689999999999999999643 36788777766431 1100001122345799
Q ss_pred HHHHHHHHcHHHHHhcccCCccccccCCCcccEEEeCCCCCC--C------hhhcc----CCeEEEEEECCE
Q 008063 516 LTDALIAHTLSAARACFLENDVGSLSPGKIADFVILSTSSWE--D------FAAEV----SASIEATYVSGV 575 (579)
Q Consensus 516 ~~~al~~~T~npA~~lgl~~~~G~I~~G~~ADlvvld~~~~~--~------~~~~~----~~~v~~v~v~G~ 575 (579)
++++|+++|.|+|++||++ +|+|++||.|||||+|.+... + +..+. ...|..|||+|+
T Consensus 349 ~~~~l~~~T~~gA~alg~~--~Gsle~Gk~ADlvvld~~~~~~~p~~~~~~~~~lv~~~~~~~V~~v~V~G~ 418 (418)
T cd01313 349 ARALLDAALAGGAQALGLA--TGALEAGARADLLSLDLDHPSLAGALPDTLLDAWVFAAGDREVRDVVVGGR 418 (418)
T ss_pred HHHHHHHHHHHHHHHhCCC--CCeECCCCccCEEEEcCCCccccCCCchhHHHHHeecCCCCceeEEEeCCC
Confidence 9999999999999999997 899999999999999977422 1 22222 458999999996
|
The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown. |
| >PRK07572 cytosine deaminase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-32 Score=288.94 Aligned_cols=384 Identities=21% Similarity=0.244 Sum_probs=240.0
Q ss_pred ccEEEEcCeEEeCCCCCCeeeEEEEECCEEEEecChHHHHhhccCCCeEEeCCCCeeecccccccccccccCcccccccc
Q 008063 45 ADLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHFIPGGLQMARVKL 124 (579)
Q Consensus 45 ~~~likn~~v~~~~~~~~~~~~v~I~~GkI~~Ig~~~~~~~~~~~~~~viD~~g~~V~PG~ID~H~H~~~~~~~~~~~~~ 124 (579)
|+++|+|++|+++.. ..+|+|+||+|++|++..+ ....++||++|++|+|||||+|+|+......
T Consensus 2 ~~~~i~~~~i~~~~~----~~~i~i~~g~I~~v~~~~~-----~~~~~~id~~g~~~~PG~id~h~h~~~~~~~------ 66 (426)
T PRK07572 2 FDLIVRNANLPDGRT----GIDIGIAGGRIAAVEPGLQ-----AEAAEEIDAAGRLVSPPFVDPHFHMDATLSY------ 66 (426)
T ss_pred CcEEEECeEECCCCe----eEEEEEECCEEEEecCCCC-----CCcCceEeCCCCEEcccceehhhCcchhhcc------
Confidence 568899999998542 4589999999999997532 1245799999999999999999998532100
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCCCeEEEeCCCCCCCCCCCCChHHhhhhCCCCeEEEEeCCCchhhhcHHHHHHcCCCCC
Q 008063 125 RGVSHKDEFVRRVKEAVKNSKKGSWILGGGWNNDLWGGDLPMASWIDDITPHNPVWLSRMDGHMGLANSVALQLVGITNL 204 (579)
Q Consensus 125 ~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~p~~~~ld~~~~~~p~~~~~~~~~~~~~n~~~~~~~g~~~~ 204 (579)
| .+.
T Consensus 67 ---------------------------~-----------~~~-------------------------------------- 70 (426)
T PRK07572 67 ---------------------------G-----------LPR-------------------------------------- 70 (426)
T ss_pred ---------------------------C-----------CCC--------------------------------------
Confidence 0 000
Q ss_pred CCCCCCCeEEeCCCCCcCEEEhHhHHHHhcccCCCCCHHHHHHHHHHHHHHHHhcCccEEEeCCcCCCCCccccchHHHH
Q 008063 205 SEDPNGGTIMKTSSGEPTGLLIDAAMKLILPWIPEVSVDERREALLRASNLALSRGVTTVVDFGRYYPGESVQLSWEDFA 284 (579)
Q Consensus 205 ~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Git~v~~~~~~~~~~~~~~~~~~~~ 284 (579)
-...|.+.+.. .......+..++++.+.......+.++++|+|++.++.... .. ....+....
T Consensus 71 --------------~~~~g~l~e~l-~~~~~~~~~~t~edl~~~a~~~~~e~l~~G~Ttvrd~~d~~-~~-~~~~~~a~~ 133 (426)
T PRK07572 71 --------------VNASGTLLEGI-ALWGELKPLLTQEALVERALRYCDWAVARGLLAIRSHVDVC-DP-RLLAVEALL 133 (426)
T ss_pred --------------CCCCCCHHHHH-HHHHHHHhcCCHHHHHHHHHHHHHHHHHcCcccEeeccccC-CC-cccHHHHHH
Confidence 00112222211 22223334567899999999999999999999999963210 11 011222222
Q ss_pred HHHHHHhhcCCCeeEEEEccCccch--hhHHHHHHhcCCCCCCceEEceEEEEEcCccCCCcccccCCCCCCCCCCcccC
Q 008063 285 DVYQWASYSEKMKIRVCLFFPLETW--SSLADLINKTGHVLSDWVYLGGVKAFADGSLGSNSALFHEPYADEPHNYGLQV 362 (579)
Q Consensus 285 ~~~~~~~~~~~~~i~v~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~k~~~dg~~~~~~~~~~~~~~~~~~~~~~~~ 362 (579)
+..... ...+.+....+.....+ +...+..+..-.. |..++ | + .|+.... ..
T Consensus 134 ~~~~~~--~~~~~~~~~a~~~~g~~~~~~~~~~~~~~l~~--------g~d~i--G---g------~p~~~~~-----~~ 187 (426)
T PRK07572 134 EVRERV--APYLDLQLVAFPQDGVLRSPGAVDNLERALDM--------GVDVV--G---G------IPHFERT-----MA 187 (426)
T ss_pred HHHHHh--hccceEEEEeccChhhccCccHHHHHHHHHHc--------CCCEE--e---C------CCCCccc-----cc
Confidence 211111 12222222222111000 1111111110000 11111 0 0 0111000 00
Q ss_pred CCHHHHHHHHHHHHHCCCeEEEEec-chHHHHHHHHHHHHHHHhcCCCCCCceEeeccCCCh-------hhHHHHhhCCc
Q 008063 363 MELESLLSMTMASDKSGLQVAIHAI-GDRANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLAS-------GTAARFGDQGI 434 (579)
Q Consensus 363 ~~~~~l~~~~~~a~~~g~~i~iH~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~i~H~~~~~~-------~~~~~~~~~~i 434 (579)
.+.+.++.+++.|+++|+++.+|+. +..+....++.+.+...+.|..+ +..+.||..+++ ++++++++.|+
T Consensus 188 ~~~e~l~~~~~~A~~~g~~v~~H~~e~~~~~~~~~~~~~~~~~~~G~~~-~v~~~H~~~l~~~~~~~~~~~~~~la~~g~ 266 (426)
T PRK07572 188 DGAESVRLLCEIAAERGLRVDMHCDESDDPLSRHIETLAAETQRLGLQG-RVAGSHLTSMHSMDNYYVSKLIPLMAEAGV 266 (426)
T ss_pred hHHHHHHHHHHHHHHcCCCeEEEECCCCChhHHHHHHHHHHHHHhCCCC-CEEEEccchhhcCCHHHHHHHHHHHHHcCC
Confidence 2348999999999999999999995 44555555565555556677766 888999987765 56999999999
Q ss_pred EEEecccccccchhHHHHhhChhhhhhhhhhHHHHHHCCCeeeecCCCCC------CCCCHHHHHHHHHcccCCCCCCCC
Q 008063 435 VASMQPQHLLDDADSARKKLGVDRAERESYLFQSLLANNALLALGSDWPV------ADINPLCAIRTAMKRIPPGWDNAW 508 (579)
Q Consensus 435 ~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD~~~------~~~~~~~~~~~~~~~~~~~~~~~~ 508 (579)
.+++||.++........ ..+ .. ....+++.++++|+++++|||... ...++++.++.+......
T Consensus 267 ~vv~~P~~n~~l~~~~~-~~~--~~-~g~~~v~~l~~~GV~v~lGtD~~~~~~~~~~~~~~~e~~~~~~~~~~~------ 336 (426)
T PRK07572 267 NAIANPLINITLQGRHD-TYP--KR-RGMTRVPELMAAGINVAFGHDCVMDPWYSLGSGDMLEVAHMGLHVAQM------ 336 (426)
T ss_pred eEEECchhhhhhcCCCC-CCC--CC-CCCcCHHHHHHCCCcEEEecCCCCCCCCCCCCCCHHHHHHHHHHHHcC------
Confidence 99999987642110000 000 11 346689999999999999999742 235777777765432110
Q ss_pred CCCCCCCHHHHHHHHcHHHHHhcccCCccccccCCCcccEEEeC-CCCCCChhhccCCeEEEEEECCEEeCC
Q 008063 509 IPSERISLTDALIAHTLSAARACFLENDVGSLSPGKIADFVILS-TSSWEDFAAEVSASIEATYVSGVQAYP 579 (579)
Q Consensus 509 ~~~~~ls~~~al~~~T~npA~~lgl~~~~G~I~~G~~ADlvvld-~~~~~~~~~~~~~~v~~v~v~G~~v~~ 579 (579)
.....++++|+++|.|||++||+++ .| |++||.||||++| .+|++.+... .++..||++|++|+.
T Consensus 337 --~~~~~l~~~l~~aT~~~A~~lgl~~-~g-i~~G~~ADlvl~d~~~p~e~i~~~--~~~~~V~~~G~~v~~ 402 (426)
T PRK07572 337 --TGQDAMRACFDAVTVNPARIMGLEG-YG-LEPGCNADLVLLQARDPIEAIRLR--AARLAVIRRGKVIAR 402 (426)
T ss_pred --CCHHHHHHHHHHhhcchHHhhCCCC-cC-CCCCCcCCEEEEeCCCHHHHHHhc--CCceEEEECCEEEec
Confidence 0012356778899999999999987 67 9999999999999 5887755433 378999999999863
|
|
| >PRK09230 cytosine deaminase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-32 Score=282.29 Aligned_cols=387 Identities=15% Similarity=0.183 Sum_probs=241.9
Q ss_pred ccEEEEcCeEEeCCCCCCeeeEEEEECCEEEEecChHHHHhhccCCCeEEeCCCCeeecccccccccccccCcccccccc
Q 008063 45 ADLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHFIPGGLQMARVKL 124 (579)
Q Consensus 45 ~~~likn~~v~~~~~~~~~~~~v~I~~GkI~~Ig~~~~~~~~~~~~~~viD~~g~~V~PG~ID~H~H~~~~~~~~~~~~~ 124 (579)
..++|+|++|+++.. ..+|+|+||+|++|++..+.. .++.++||++|++|+|||||+|+|+......
T Consensus 4 ~~~li~~~~~~~~~~----~~~i~i~~g~I~~i~~~~~~~---~~~~~~id~~g~~v~PGlid~H~H~~~~~~~------ 70 (426)
T PRK09230 4 ALMTIKNARLPGKEG----LWQITIEDGKISAIEPQSEAS---LEAGEVLDAEGGLAIPPFIEPHIHLDTTQTA------ 70 (426)
T ss_pred ceEEEECcEEcCCCe----eEEEEEECCEEEEecCCCCCC---CCCCceEeCCCCEeccceeEEEEccccceec------
Confidence 468999999987532 258999999999999863211 1356799999999999999999998543110
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCCCeEEEeCCCCCCCCCCCCChHHhhhhCCCCeEEEEeCCCchhhhcHHHHHHcCCCCC
Q 008063 125 RGVSHKDEFVRRVKEAVKNSKKGSWILGGGWNNDLWGGDLPMASWIDDITPHNPVWLSRMDGHMGLANSVALQLVGITNL 204 (579)
Q Consensus 125 ~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~p~~~~ld~~~~~~p~~~~~~~~~~~~~n~~~~~~~g~~~~ 204 (579)
+.. .|. ...+...|+..
T Consensus 71 -~~~-------------------------~~~-----~~~~l~~~i~~-------------------------------- 87 (426)
T PRK09230 71 -GEP-------------------------NWN-----QSGTLFEGIER-------------------------------- 87 (426)
T ss_pred -CCC-------------------------ccC-----CCCCHHHHHHH--------------------------------
Confidence 000 000 00000111111
Q ss_pred CCCCCCCeEEeCCCCCcCEEEhHhHHHHhcccCCCCCHHHHHHHHHHHHHHHHhcCccEEEeCCcCCCCCccccchHHHH
Q 008063 205 SEDPNGGTIMKTSSGEPTGLLIDAAMKLILPWIPEVSVDERREALLRASNLALSRGVTTVVDFGRYYPGESVQLSWEDFA 284 (579)
Q Consensus 205 ~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Git~v~~~~~~~~~~~~~~~~~~~~ 284 (579)
. .......++++.+......+..++++|+|++.++-.. .. .....++...
T Consensus 88 ---------------------------~-~~~~~~~t~ed~~~~a~~~~~e~l~~GvTtvr~~~d~-~~-~~~~~~~a~~ 137 (426)
T PRK09230 88 ---------------------------W-AERKALLTHEDVKQRAWQTLKWQIANGIQHVRTHVDV-SD-PTLTALKAML 137 (426)
T ss_pred ---------------------------H-HHHHhcCCHHHHHHHHHHHHHHHHHcCcccEEecccc-CC-cchhHHHHHH
Confidence 0 0011235668889999999999999999999987421 11 1112233344
Q ss_pred HHHHHHhhcCCCeeEEEEccCccchhhHHHHHHhcCCCCCCceEEceEEEEEcCccCCCcccccCCCCCCCCCCcccCCC
Q 008063 285 DVYQWASYSEKMKIRVCLFFPLETWSSLADLINKTGHVLSDWVYLGGVKAFADGSLGSNSALFHEPYADEPHNYGLQVME 364 (579)
Q Consensus 285 ~~~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~k~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (579)
+..+..+....++++........+.+...+..........+ ++ + ...+.++. ...+
T Consensus 138 ~~~~~~~~~~~~~i~a~~~~~~~~~~~~~~~l~~a~~~~~~--------~v-----g---~~p~~~~~--------~~~~ 193 (426)
T PRK09230 138 EVKEEVAPWVDLQIVAFPQEGILSYPNGEALLEEALRLGAD--------VV-----G---AIPHFEFT--------REYG 193 (426)
T ss_pred HHHHHhhCcceEEEEeccCccccCCccHHHHHHHHHHcCCC--------EE-----e---CCCCcccc--------chhH
Confidence 44444544455555544322111111112222211111101 00 0 01111111 0135
Q ss_pred HHHHHHHHHHHHHCCCeEEEEecchHH-HHHHHHHHHHHHHhcCCCCCCceEeeccCC-------ChhhHHHHhhCCcEE
Q 008063 365 LESLLSMTMASDKSGLQVAIHAIGDRA-NDLVLDMYKSVVVTTGKRDQRFRIEHAQHL-------ASGTAARFGDQGIVA 436 (579)
Q Consensus 365 ~~~l~~~~~~a~~~g~~i~iH~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~i~H~~~~-------~~~~~~~~~~~~i~~ 436 (579)
++.+..++++|+++|+++++|+.+... .........+.....+ .+.+..+.||.++ ++++++++++.|+.+
T Consensus 194 ~e~l~~~~~~A~~~g~~~~~H~~E~~~~~~~~~~~~~~~~~~~g-l~~~v~~~H~~~l~~~~~~~~~~~~~~La~~gv~v 272 (426)
T PRK09230 194 VESLHKAFALAQKYDRLIDVHCDEIDDEQSRFVETVAALAHREG-MGARVTASHTTAMHSYNGAYTSRLFRLLKMSGINF 272 (426)
T ss_pred HHHHHHHHHHHHHhCCCcEEEECCCCCcchHHHHHHHHHHHHhC-CCCCEEEEecCchhcCCHHHHHHHHHHHHHcCCeE
Confidence 788999999999999999999984322 2222233344444556 4678999999999 578999999999999
Q ss_pred EecccccccchhHHHHhhChhhhhhhhhhHHHHHHCCCeeeecCCCCCCC------CCHHHHHHHHHcccCCCCCCCCCC
Q 008063 437 SMQPQHLLDDADSARKKLGVDRAERESYLFQSLLANNALLALGSDWPVAD------INPLCAIRTAMKRIPPGWDNAWIP 510 (579)
Q Consensus 437 ~~~p~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~ 510 (579)
++||.++...+.... ...+. ....|++.|.++|+++++|||+..++ .++++.++.+......
T Consensus 273 v~cP~sn~~l~~~~~---~~p~~-~g~~pi~~l~~aGv~V~lGTD~~~d~~~~~~~~d~~~~~~~~~~~~~~-------- 340 (426)
T PRK09230 273 VANPLVNIHLQGRFD---TYPKR-RGITRVKEMLEAGINVCFGHDDVFDPWYPLGTANMLQVLHMGLHVCQL-------- 340 (426)
T ss_pred EECcchhhhhcCCCC---CCCCC-CCCcCHHHHHHCCCeEEEecCCCCCCCcCCCCCCHHHHHHHHHHHHhh--------
Confidence 999999863221000 00111 44668999999999999999976443 4666666654321110
Q ss_pred CCCC-CHHHHHHHHcHHHHHhcccCCccccccCCCcccEEEeCCC-CCCChhhccCCeEEEEEECCEEeCC
Q 008063 511 SERI-SLTDALIAHTLSAARACFLENDVGSLSPGKIADFVILSTS-SWEDFAAEVSASIEATYVSGVQAYP 579 (579)
Q Consensus 511 ~~~l-s~~~al~~~T~npA~~lgl~~~~G~I~~G~~ADlvvld~~-~~~~~~~~~~~~v~~v~v~G~~v~~ 579 (579)
... +++++|+|+|.|||+.||+++ .| |++||.||||+++.+ +.+.+. ....+..|+++|++|+.
T Consensus 341 -~~~~~~~~~l~maT~~gA~alg~~~-~g-le~G~~ADlv~~~~~~~~~~~~--~~~~~~~v~~~G~~v~~ 406 (426)
T PRK09230 341 -MGYGQINDGLNLITTHSARTLNLQD-YG-IEVGNPANLIILPAENGFDAVR--RQVPVRYSIRHGKVIAE 406 (426)
T ss_pred -CChhhHHHHHHHHhcchhHHhCCCC-cC-CCCCCcCCEEEEeCCCHHHHHh--ccCCceEEEECCEEEec
Confidence 001 468999999999999999987 78 999999999999964 322211 13478999999999974
|
|
| >PRK05985 cytosine deaminase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-31 Score=279.70 Aligned_cols=371 Identities=19% Similarity=0.151 Sum_probs=230.5
Q ss_pred ccEEEEcCeEEeCCCCCCeeeEEEEECCEEEEecChHHHHhhccCCCeEEeCCCCeeecccccccccccccCcccccccc
Q 008063 45 ADLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHFIPGGLQMARVKL 124 (579)
Q Consensus 45 ~~~likn~~v~~~~~~~~~~~~v~I~~GkI~~Ig~~~~~~~~~~~~~~viD~~g~~V~PG~ID~H~H~~~~~~~~~~~~~ 124 (579)
++++|+|++|+++. ..+|+|+||+|++|++..+. +++.++||++|++|+|||||+|+|+............
T Consensus 2 ~~~~i~~~~i~~~~-----~~~v~i~~g~i~~i~~~~~~----~~~~~~id~~g~~v~Pg~iD~h~h~~~~~~~~~~~~~ 72 (391)
T PRK05985 2 TDLLFRNVRPAGGA-----AVDILIRDGRIAAIGPALAA----PPGAEVEDGGGALALPGLVDGHIHLDKTFWGDPWYPN 72 (391)
T ss_pred CCEEEECcEECCCC-----eeEEEEECCEEEEecCCCCC----CCCCcEEECCCCEEecceEeeEEccCccccCCccccC
Confidence 46899999999864 34899999999999986432 1356799999999999999999998543210000000
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCCCeEEEeCCCCCCCCCCCCChHHhhhhCCCCeEEEEeCCCchhhhcHHHHHHcCCCCC
Q 008063 125 RGVSHKDEFVRRVKEAVKNSKKGSWILGGGWNNDLWGGDLPMASWIDDITPHNPVWLSRMDGHMGLANSVALQLVGITNL 204 (579)
Q Consensus 125 ~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~p~~~~ld~~~~~~p~~~~~~~~~~~~~n~~~~~~~g~~~~ 204 (579)
....
T Consensus 73 ~~~~---------------------------------------------------------------------------- 76 (391)
T PRK05985 73 EPGP---------------------------------------------------------------------------- 76 (391)
T ss_pred CCCC----------------------------------------------------------------------------
Confidence 0000
Q ss_pred CCCCCCCeEEeCCCCCcCEEEhHhHHHHhcccCCCCCHHHHHHHHHHHHHHHHhcCccEEEeCCcCCCCCccccchHHHH
Q 008063 205 SEDPNGGTIMKTSSGEPTGLLIDAAMKLILPWIPEVSVDERREALLRASNLALSRGVTTVVDFGRYYPGESVQLSWEDFA 284 (579)
Q Consensus 205 ~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Git~v~~~~~~~~~~~~~~~~~~~~ 284 (579)
.+.+... ... .....+..+........++.++++|+|++.++....++.. ...++...
T Consensus 77 -------------------~~~~~i~-~~~-~~~~~~~~~~~~~a~~~~~~~l~~G~t~vr~~~~~~~~~~-~~~~~~~~ 134 (391)
T PRK05985 77 -------------------SLRERIA-NER-RRRAASGHPAAERALALARAAAAAGTTAMRSHVDVDPDAG-LRHLEAVL 134 (391)
T ss_pred -------------------CHHHHHH-HHH-HhhccchhHHHHHHHHHHHHHHhcCcceEEeeEccCCCcc-cchHHHHH
Confidence 0011000 000 0112344677788888999999999999988753322221 12344444
Q ss_pred HHHHHHhhcCCCeeEEEEccCccchh--hHHHHHHhcCCCCCCceEEceEEEEEcCccCCCcccccCCCCCCCCCCcccC
Q 008063 285 DVYQWASYSEKMKIRVCLFFPLETWS--SLADLINKTGHVLSDWVYLGGVKAFADGSLGSNSALFHEPYADEPHNYGLQV 362 (579)
Q Consensus 285 ~~~~~~~~~~~~~i~v~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~k~~~dg~~~~~~~~~~~~~~~~~~~~~~~~ 362 (579)
+..+.. ...+.+.+..+....... ...+..........+ + .++ + .|+ ....
T Consensus 135 ~~~~~~--~~~~~~~~v~~~~~g~~~~~~~~~ll~~~l~~g~~------~-------~gg----~-~p~-------~~~~ 187 (391)
T PRK05985 135 AARETL--RGLIDIQIVAFPQSGVLSRPGTAELLDAALRAGAD------V-------VGG----L-DPA-------GIDG 187 (391)
T ss_pred HHHHHh--hCcccEEEEeccCccccCCcCHHHHHHHHHHcCCC------E-------EeC----C-CCC-------CcCC
Confidence 443332 234555555443322211 112222211111100 0 000 0 111 1122
Q ss_pred CCHHHHHHHHHHHHHCCCeEEEEecc--hHHHHHHHHHHHHHHHhcCCCCCCceEeeccCCC---h----hhHHHHhhCC
Q 008063 363 MELESLLSMTMASDKSGLQVAIHAIG--DRANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLA---S----GTAARFGDQG 433 (579)
Q Consensus 363 ~~~~~l~~~~~~a~~~g~~i~iH~~g--~~~~~~~~~~~~~~~~~~~~~~~~~~i~H~~~~~---~----~~~~~~~~~~ 433 (579)
.+++.+.++++.|+++|+++++|+.. +.......+.++... ..+.. .+..+.|+..+. + +.++++++.+
T Consensus 188 ~~~~~l~~~~~~A~~~g~~i~~Hv~e~~d~~~~~~~~~~e~~~-~~g~~-~~~~i~H~~~l~~~~~~~~~~~i~~lae~g 265 (391)
T PRK05985 188 DPEGQLDIVFGLAERHGVGIDIHLHEPGELGAFQLERIAARTR-ALGMQ-GRVAVSHAFCLGDLPEREVDRLAERLAEAG 265 (391)
T ss_pred CHHHHHHHHHHHHHHhCCCcEEeeCCCCCccHHHHHHHHHHHH-HhCCC-CCEehhhhhhhhcCCHHHHHHHHHHHHHcC
Confidence 56789999999999999999999873 333333333443332 33433 378999998653 3 5578999999
Q ss_pred cEEEecccccccchhHHHHhhChhhhhhhhhhHHHHHHCCCeeeecCCCCCC------CCCHHHHHHHHHcccCCCCCCC
Q 008063 434 IVASMQPQHLLDDADSARKKLGVDRAERESYLFQSLLANNALLALGSDWPVA------DINPLCAIRTAMKRIPPGWDNA 507 (579)
Q Consensus 434 i~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD~~~~------~~~~~~~~~~~~~~~~~~~~~~ 507 (579)
+.+++++... ...++++.+.+.|+++++|||++.+ ..+++..+..+......
T Consensus 266 ~~v~~~~~~~-----------------~~~~~~~~l~~~Gv~v~lGtD~~~~~~~p~~~~~~~~~~~~~~~~~~~----- 323 (391)
T PRK05985 266 VAIMTNAPGS-----------------VPVPPVAALRAAGVTVFGGNDGIRDTWWPYGNGDMLERAMLIGYRSGF----- 323 (391)
T ss_pred CeEEEeCCCC-----------------CCCCCHHHHHHCCCeEEEecCCCCCCCcCCCCCcHHHHHHHHHHHHcc-----
Confidence 9998885431 4566899999999999999997543 35667665544321110
Q ss_pred CCCCCCCCHHHHHHHHcHHHHHhcccCCccccccCCCcccEEEeCCCCCCChhhccCCeEEEEEECCEEeCC
Q 008063 508 WIPSERISLTDALIAHTLSAARACFLENDVGSLSPGKIADFVILSTSSWEDFAAEVSASIEATYVSGVQAYP 579 (579)
Q Consensus 508 ~~~~~~ls~~~al~~~T~npA~~lgl~~~~G~I~~G~~ADlvvld~~~~~~~~~~~~~~v~~v~v~G~~v~~ 579 (579)
...-+++++|+++|.|||+.+|+++ ++|++||.||||++|.+++.+... ....+..||++|++||.
T Consensus 324 ---~~~~~~~~al~~~T~~~A~~lg~~~--~~l~~G~~ADlvvld~~~~~~~~~-~~~~~~~v~~~G~~v~~ 389 (391)
T PRK05985 324 ---RTDDELAAALDCVTHGGARALGLED--YGLAVGARADFVLVDAETVAEAVV-AVPVRRLVVRGGRIVAR 389 (391)
T ss_pred ---CChHHHHHHHHHHcchhHHHhCCcc--cCCCCCCcCCEEEECCCCHHHHHh-hCCcceEEEECCEEEec
Confidence 0112468999999999999999986 469999999999999998652111 13356779999999984
|
|
| >TIGR02022 hutF formiminoglutamate deiminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-32 Score=286.56 Aligned_cols=200 Identities=22% Similarity=0.220 Sum_probs=152.3
Q ss_pred CCCHHHHHHHHHHHHHCCCeEEEEecch-HHHHHHHHHHH----HHHHhcCCCCCCceEeeccCCChhhHHHHhhCCcEE
Q 008063 362 VMELESLLSMTMASDKSGLQVAIHAIGD-RANDLVLDMYK----SVVVTTGKRDQRFRIEHAQHLASGTAARFGDQGIVA 436 (579)
Q Consensus 362 ~~~~~~l~~~~~~a~~~g~~i~iH~~g~-~~~~~~~~~~~----~~~~~~~~~~~~~~i~H~~~~~~~~~~~~~~~~i~~ 436 (579)
.++++.++++.+ ++++|+++++|+.+. .+.....+.+. +.....+..+.+..+.||.++++++++++++.|+.+
T Consensus 212 ~~s~e~l~~~~~-a~~~g~~v~~H~~e~~~e~~~~~~~~G~~~v~~l~~~g~l~~~~~~~H~~~l~~~d~~~la~~g~~v 290 (455)
T TIGR02022 212 AVTPEQLAAVLQ-ASDRQAPVHIHVAEQQKEVDDCLAWSGRRPVEWLLDHGPVDARWCLVHATHLTDEETALLARSGAVA 290 (455)
T ss_pred cCCHHHHHHHHH-HHhCCCceEEEECCChHHHHHHHHHhCCCHHHHHHHcCCCCCCEEEEEeecCCHHHHHHHHHcCCeE
Confidence 378999999999 889999999999743 44444433221 345566778889999999999999999999999999
Q ss_pred EecccccccchhHHHHhhChhhhhhhhhhHHHHHHCCCeeeecCCCCCCCCCHHHHHHHHHcccC--CCCCCCC-CCCCC
Q 008063 437 SMQPQHLLDDADSARKKLGVDRAERESYLFQSLLANNALLALGSDWPVADINPLCAIRTAMKRIP--PGWDNAW-IPSER 513 (579)
Q Consensus 437 ~~~p~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~ 513 (579)
++||.++. .++ ...+|++.|+++|+++++|||+. ...+++..|+.+..... ......+ .....
T Consensus 291 ~~~P~sn~--------~lg-----~g~~pi~~l~~~Gv~v~lGTD~~-~~~d~~~~m~~a~~~~~~~~~~~~~~~~~~~~ 356 (455)
T TIGR02022 291 GLCPTTEA--------NLG-----DGIFPAVDFVAAGGRFGIGSDSH-VVIDVAEELRQLEYGQRLRDRARNVLAAGPGP 356 (455)
T ss_pred EEChhhhc--------ccc-----CCCCCHHHHHHCCCeEEEECCCC-CCCCHHHHHHHHHHHHHHHhcccccccCCccc
Confidence 99999875 333 45669999999999999999963 35688888887743211 0000111 12235
Q ss_pred CCHHHHHHHHcHHHHHhcccCCccccccCCCcccEEEeCCC-CCC-C------hhhc----cCCeEEEEEECCEEeC
Q 008063 514 ISLTDALIAHTLSAARACFLENDVGSLSPGKIADFVILSTS-SWE-D------FAAE----VSASIEATYVSGVQAY 578 (579)
Q Consensus 514 ls~~~al~~~T~npA~~lgl~~~~G~I~~G~~ADlvvld~~-~~~-~------~~~~----~~~~v~~v~v~G~~v~ 578 (579)
++.+++|+|+|.|+|++||++ +|+|++||.|||||+|.+ |.. + ...+ ...+|..|||+|++|+
T Consensus 357 ~~~~~~l~~aT~~gAralg~~--~GsLe~Gk~ADlvvld~~~~~~~~~~~~~~~~~lv~~~~~~~V~~v~V~G~~v~ 431 (455)
T TIGR02022 357 SVGRALYDAALLGGAQALGLA--TGGLRAGARADFLTLDGDHPYLAGALGDSLLDRWLFAGGGAAVRDVWVGGRWVV 431 (455)
T ss_pred chHHHHHHHHHHHHHHHhCCC--CCccCCCCCcCEEEEeCCCcccCCCCchhHHHHHhhcCCCCCccEEEECCEEEE
Confidence 788999999999999999994 899999999999999977 321 1 1111 1468999999999986
|
In some species, histidine utilization goes via urocanate to glutamate in four step, the last being removal of formamide. This model describes an alternate fourth step, formiminoglutamate hydrolase, which leads to N-formyl-L-glutamate. This product may be acted on by formylglutamate amidohydrolase (TIGR02017) and bypass glutamate as a product during its degradation. Alternatively, removal of formate (by EC 3.5.1.68) would yield glutamate. |
| >TIGR01224 hutI imidazolonepropionase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-32 Score=284.04 Aligned_cols=183 Identities=22% Similarity=0.227 Sum_probs=141.1
Q ss_pred CCHHHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhcCCCCCCceEeeccCCChhhHHHHhhCCcEEEecccc
Q 008063 363 MELESLLSMTMASDKSGLQVAIHAIGDRANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLASGTAARFGDQGIVASMQPQH 442 (579)
Q Consensus 363 ~~~~~l~~~~~~a~~~g~~i~iH~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~H~~~~~~~~~~~~~~~~i~~~~~p~~ 442 (579)
.+.+.++++++.|++.|+++.+|+.+...... .+.+. ..+ +..+.|+.++++++++++++.|+.+++||.+
T Consensus 194 ~~~~~~~~~~~~A~~~g~~v~~H~~e~~~~~~----~~~~~-~~g----~~~~~H~~~~~~~~l~~la~~g~~~~~~P~~ 264 (377)
T TIGR01224 194 FSVEQSRRILQAAQEAGLPVKLHAEELSNLGG----AELAA-KLG----AVSADHLEHASDAGIKALAEAGTVAVLLPGT 264 (377)
T ss_pred cCHHHHHHHHHHHHHCCCCEEEEecCCCCCCH----HHHHH-HcC----CCccHHHhcCCHHHHHHHHhcCCEEEECchH
Confidence 46789999999999999999999975421111 11111 122 4568899999999999999999999999998
Q ss_pred cccchhHHHHhhChhhhhhhhhhHHHHHHCCCeeeecCCCCCCCCCHHHHHHHHHcccCCCCCCCCCCCCCCCHHHHHHH
Q 008063 443 LLDDADSARKKLGVDRAERESYLFQSLLANNALLALGSDWPVADINPLCAIRTAMKRIPPGWDNAWIPSERISLTDALIA 522 (579)
Q Consensus 443 ~~~~~~~~~~~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~ 522 (579)
+.. ++ ...+|++.+.++|+++++|||... ..+++..+...+.... ...++++++++++
T Consensus 265 ~~~--------l~-----~~~~p~~~l~~~Gv~v~lgTD~~~-~~~~~~~~~~~~~~~~--------~~~~ls~~eal~~ 322 (377)
T TIGR01224 265 TFY--------LR-----ETYPPARQLIDYGVPVALATDLNP-GSSPTLSMQLIMSLAC--------RLMKMTPEEALHA 322 (377)
T ss_pred HHh--------cC-----CcCccHHHHHHCCCCEEEECCCCC-CCChhHHHHHHHHHHH--------HhcCCCHHHHHHH
Confidence 752 22 345689999999999999999632 1455555554443211 2346999999999
Q ss_pred HcHHHHHhcccCCccccccCCCcccEEEeCCCCCC-ChhhccCCeEEEEEECCEE
Q 008063 523 HTLSAARACFLENDVGSLSPGKIADFVILSTSSWE-DFAAEVSASIEATYVSGVQ 576 (579)
Q Consensus 523 ~T~npA~~lgl~~~~G~I~~G~~ADlvvld~~~~~-~~~~~~~~~v~~v~v~G~~ 576 (579)
+|.|||+.+|+++.+|+|++||.|||||+|.+++. .+......+|..||++||+
T Consensus 323 ~T~~~A~~lg~~~~~G~l~~G~~ADlvv~d~~~~~~~~~~~~~~~v~~v~v~G~~ 377 (377)
T TIGR01224 323 ATVNAAYALGLGEERGTLEAGRDADLVILSAPSYAEIPYHYGVNHVHAVIKNGNI 377 (377)
T ss_pred HHHHHHHHhCCCCCceeeCCCCcCCEEEEcCCChHHhhhhcCCCCceEEEECCCC
Confidence 99999999999988999999999999999999876 3333335689999999984
|
This enzyme catalyzes the third step in histidine degradation. |
| >cd01312 Met_dep_hydrolase_D Metallo-dependent hydrolases, subgroup D is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-31 Score=276.05 Aligned_cols=191 Identities=17% Similarity=0.180 Sum_probs=149.7
Q ss_pred CCHHHHHHHHHHHHHCCCeEEEEecchH-HHHHHHHHH----------------------HHHHHhcCCCCCCceEeecc
Q 008063 363 MELESLLSMTMASDKSGLQVAIHAIGDR-ANDLVLDMY----------------------KSVVVTTGKRDQRFRIEHAQ 419 (579)
Q Consensus 363 ~~~~~l~~~~~~a~~~g~~i~iH~~g~~-~~~~~~~~~----------------------~~~~~~~~~~~~~~~i~H~~ 419 (579)
++++.++++.+.|+++++++++|+.+.. +.....+.. -+.....|..+.+..+.||.
T Consensus 160 ~s~e~l~~~~~lA~~~g~~i~~Hl~E~~~e~~~~~~~~g~~~~~~~~~~~~~~~~~g~~pv~~l~~~g~L~~~~~~~H~~ 239 (381)
T cd01312 160 VHPELAQDLIDLAKKLNLPLSTHFLESKEEREWLEESKGWFKHFWESFLKLPKPKKLATAIDFLDMLGGLGTRVSFVHCV 239 (381)
T ss_pred cCHHHHHHHHHHHHHcCCeEEEEecCcHHHHHHHHHhccchhhHhhhhcccccccCCCCHHHHHHHcCCCCCCcEEEECC
Confidence 7889999999999999999999998553 333222110 12345567788899999999
Q ss_pred CCChhhHHHHhhCCcEEEecccccccchhHHHHhhChhhhhhhhhhHHHHHHCCCeeeecCCCCCC--CCCHHHHHHHHH
Q 008063 420 HLASGTAARFGDQGIVASMQPQHLLDDADSARKKLGVDRAERESYLFQSLLANNALLALGSDWPVA--DINPLCAIRTAM 497 (579)
Q Consensus 420 ~~~~~~~~~~~~~~i~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD~~~~--~~~~~~~~~~~~ 497 (579)
++++++++++++.|+.+++||.++. +++ ...+|++.++++|+++++|||+..+ ..+++.+|+.+.
T Consensus 240 ~l~~~~~~~l~~~g~~v~~~P~sn~--------~lg-----~g~~p~~~~~~~Gv~v~lGtD~~~~~~~~d~~~~~~~~~ 306 (381)
T cd01312 240 YANLEEAEILASRGASIALCPRSNR--------LLN-----GGKLDVSELKKAGIPVSLGTDGLSSNISLSLLDELRALL 306 (381)
T ss_pred cCCHHHHHHHHHcCCeEEECcchhh--------hhc-----CCCcCHHHHHHCCCcEEEeCCCCccCCCCCHHHHHHHHH
Confidence 9999999999999999999998864 333 3456899999999999999997643 368999998876
Q ss_pred cccCCCCCCCCCCCCCCCHHHHHHHHcHHHHHhcccCCccccccCCCcccEEEeCCCCCC----Chhhc--cCCeEEEEE
Q 008063 498 KRIPPGWDNAWIPSERISLTDALIAHTLSAARACFLENDVGSLSPGKIADFVILSTSSWE----DFAAE--VSASIEATY 571 (579)
Q Consensus 498 ~~~~~~~~~~~~~~~~ls~~~al~~~T~npA~~lgl~~~~G~I~~G~~ADlvvld~~~~~----~~~~~--~~~~v~~v~ 571 (579)
..... ....++++++|+|+|.|+|+.||++ +|+|++||.||||++|.+... ++..+ ....|.+||
T Consensus 307 ~~~~~-------~~~~~~~~~~l~~aT~~gA~alg~~--~Gsle~Gk~ADlvv~d~~~~~~~~~~~~~~~~~~~~v~~v~ 377 (381)
T cd01312 307 DLHPE-------EDLLELASELLLMATLGGARALGLN--NGEIEAGKRADFAVFELPGPGIKEQAPLQFILHAKEVRHLF 377 (381)
T ss_pred Hhccc-------ccccCCHHHHHHHHHHHHHHHhCCC--CCccCCCCcccEEEEeCCCcCCCCccHHHHHHccCCCCEEE
Confidence 53211 1113689999999999999999997 899999999999999976421 11111 256899999
Q ss_pred ECCE
Q 008063 572 VSGV 575 (579)
Q Consensus 572 v~G~ 575 (579)
|+||
T Consensus 378 v~G~ 381 (381)
T cd01312 378 ISGK 381 (381)
T ss_pred ecCC
Confidence 9996
|
The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown. |
| >PRK14085 imidazolonepropionase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-32 Score=280.27 Aligned_cols=350 Identities=22% Similarity=0.283 Sum_probs=217.1
Q ss_pred ccEEEEc-CeEEeCCCC-------CCeeeEEEEECCEEEEecChHHHHhhccCCCeEEeCCCCeeecccccccccccccC
Q 008063 45 ADLVVTN-GVIFTGDDS-------LLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHFIPGG 116 (579)
Q Consensus 45 ~~~likn-~~v~~~~~~-------~~~~~~v~I~~GkI~~Ig~~~~~~~~~~~~~~viD~~g~~V~PG~ID~H~H~~~~~ 116 (579)
|+++|+| +.|++++.. ..++++|+|+||||++|++..+. +.+.++||++|++|+|||||+|+|+....
T Consensus 1 ~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~v~i~~g~I~~Vg~~~~~----~~~~~~iD~~g~~v~PGlId~H~Hl~~~~ 76 (382)
T PRK14085 1 MSTLITNIGELVTNDPELGEGPLGVLRDAAVVVEGGRVAWVGPAADA----PAADERVDAGGRAVLPGFVDSHSHLVFAG 76 (382)
T ss_pred CcEEEEcccEEEcCCCcccCCCcccccCcEEEEECCEEEEEcCCccC----CCCCeEEeCCCCEEecCeEecCcCccccC
Confidence 5789999 599998643 34778999999999999986432 24568999999999999999999985432
Q ss_pred ccccccccCCCCCHHHHHHHHHHHHHcCCCCCeEEEeCCCCCCCCCCCCChHHhhhhCCCCeEEEEeCCCchhhhcHHHH
Q 008063 117 LQMARVKLRGVSHKDEFVRRVKEAVKNSKKGSWILGGGWNNDLWGGDLPMASWIDDITPHNPVWLSRMDGHMGLANSVAL 196 (579)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~p~~~~ld~~~~~~p~~~~~~~~~~~~~n~~~~ 196 (579)
.+. .++..++ .+..|
T Consensus 77 ~r~-----------~~~~~~~-------------~~~~~----------------------------------------- 91 (382)
T PRK14085 77 DRS-----------AEFAARM-------------AGEPY----------------------------------------- 91 (382)
T ss_pred Chh-----------HHHHhhh-------------cCCCc-----------------------------------------
Confidence 110 0000000 00000
Q ss_pred HHcCCCCCCCCCCCCeEEeCCCCCcCEEEhHhHHHHhcccCCCCCHHHHHHHHHHHHHHHHhcCccEEEeCCcCCCCCcc
Q 008063 197 QLVGITNLSEDPNGGTIMKTSSGEPTGLLIDAAMKLILPWIPEVSVDERREALLRASNLALSRGVTTVVDFGRYYPGESV 276 (579)
Q Consensus 197 ~~~g~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Git~v~~~~~~~~~~~~ 276 (579)
+.+ .... .......++++++.......+..++++|+|++.+.+.+ +..
T Consensus 92 -----------~~~-----------------~i~~-~~~~~~~~t~e~~~~~a~~~~~~~l~~G~Ttv~~~~~~--~~~- 139 (382)
T PRK14085 92 -----------SAG-----------------GIRT-TVAATRAASDEELRANVRRLVAEALRQGTTTVETKTGY--GLT- 139 (382)
T ss_pred -----------cCC-----------------ChHH-HHHHHHhCCHHHHHHHHHHHHHHHHhCCceEEEcCCcC--CCC-
Confidence 000 0000 01112345678899999999999999999999997532 211
Q ss_pred ccchHHHHHHHHHHhhcC-CC-eeEEEEccCc--cchhhHHHHHHhc-CCCCCCceEEceEEEEEcCccCCCcccccCCC
Q 008063 277 QLSWEDFADVYQWASYSE-KM-KIRVCLFFPL--ETWSSLADLINKT-GHVLSDWVYLGGVKAFADGSLGSNSALFHEPY 351 (579)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~-~~-~i~v~~~~~~--~~~~~~~~~~~~~-~~~~~~~~~~~g~k~~~dg~~~~~~~~~~~~~ 351 (579)
.....+..+...... .. ........+. .+.....+..... ......+ ...+|++.++.
T Consensus 140 ---~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~idi~~~~~------------ 202 (382)
T PRK14085 140 ---VEDEARSARIAAEFTDEVTFLGAHVVPPEYAGDADEYVDLVCGPMLDAVAPH--ARWIDVFCERG------------ 202 (382)
T ss_pred ---HHHHHHHHHHHHHhhhcceeeccccCCcccCCCHHHHHHHHHHHHHHHHHHh--CCeEEEEecCC------------
Confidence 122222222111110 00 0111111111 0011111111000 0000000 11233333321
Q ss_pred CCCCCCCcccCCCHHHHHHHHHHHHHCCCeEEEEecchH---HHHHHHHHHHHHHHhcCCCCCCceEeeccCCChhhHHH
Q 008063 352 ADEPHNYGLQVMELESLLSMTMASDKSGLQVAIHAIGDR---ANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLASGTAAR 428 (579)
Q Consensus 352 ~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~i~iH~~g~~---~~~~~~~~~~~~~~~~~~~~~~~~i~H~~~~~~~~~~~ 428 (579)
..+++.++++++.|++.|+++.+|+.+.. .++..++ .| ...+.|+.+++++++++
T Consensus 203 ----------~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~v~~~~~--------~g----~~~i~H~~~l~~~~~~~ 260 (382)
T PRK14085 203 ----------AFDEDQSRRVLTAGRAAGLGLRVHGNQLGPGPGVRLAVE--------LG----AASVDHCTYLTDADVDA 260 (382)
T ss_pred ----------CCCHHHHHHHHHHHHHcCCCeEEEeCcccCChHHHHHHH--------cC----CCcHHHhCCCCHHHHHH
Confidence 15789999999999999999999997532 2332221 23 45689999999999999
Q ss_pred HhhCCcEEEecccccccchhHHHHhhChhhhhhhhhhHHHHHHCCCeeeecCCCCCCCCCHHHHHHHHHcccCCCCCCCC
Q 008063 429 FGDQGIVASMQPQHLLDDADSARKKLGVDRAERESYLFQSLLANNALLALGSDWPVADINPLCAIRTAMKRIPPGWDNAW 508 (579)
Q Consensus 429 ~~~~~i~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD~~~~~~~~~~~~~~~~~~~~~~~~~~~ 508 (579)
+++.|+.+++||.++.. .+ ...++++.+.+.|+++++|||++... .....+...+....
T Consensus 261 la~~gv~~~~~P~~~~~--------~~-----~~~~~~~~l~~aGv~v~lgsD~~~~~-~~~~~~~~~~~~~~------- 319 (382)
T PRK14085 261 LAGSGTVATLLPGAEFS--------TR-----QPYPDARRLLDAGVTVALASDCNPGS-SYTSSMPFCVALAV------- 319 (382)
T ss_pred HHHcCCEEEECcHHHHh--------cC-----CCCchHHHHHHCCCcEEEEeCCCCCC-ChHHHHHHHHHHHH-------
Confidence 99999999999997642 11 33568999999999999999974221 11122222221110
Q ss_pred CCCCCCCHHHHHHHHcHHHHHhcccCCccccccCCCcccEEEeCCCCCC
Q 008063 509 IPSERISLTDALIAHTLSAARACFLENDVGSLSPGKIADFVILSTSSWE 557 (579)
Q Consensus 509 ~~~~~ls~~~al~~~T~npA~~lgl~~~~G~I~~G~~ADlvvld~~~~~ 557 (579)
...+++++++++++|.|||+.||+++ +|+|++||.|||||+|.+...
T Consensus 320 -~~~~l~~~~al~~aT~~~A~~lg~~~-~G~l~~G~~ADlvv~d~~~~~ 366 (382)
T PRK14085 320 -RQMGMTPAEAVWAATAGGARALRRDD-VGVLAVGARADLHVLDAPSHL 366 (382)
T ss_pred -HhcCCCHHHHHHHHHHHHHHHcCCCC-CCCcCCCCCCCEEEEcCCCCc
Confidence 23468999999999999999999985 899999999999999988744
|
|
| >PLN02942 dihydropyrimidinase | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-31 Score=280.47 Aligned_cols=363 Identities=18% Similarity=0.204 Sum_probs=227.1
Q ss_pred CccEEEEcCeEEeCCCCCCeeeEEEEECCEEEEecChHHHHhhccCCCeEEeCCCCeeecccccccccccccCccccccc
Q 008063 44 EADLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHFIPGGLQMARVK 123 (579)
Q Consensus 44 ~~~~likn~~v~~~~~~~~~~~~v~I~~GkI~~Ig~~~~~~~~~~~~~~viD~~g~~V~PG~ID~H~H~~~~~~~~~~~~ 123 (579)
+.+++|+|++|+++.+. ..++|+|+||||++|++..+. +.+.++||++|++|+|||||+|+|+..+...
T Consensus 4 ~~~lli~~~~v~~~~~~--~~~~i~I~~g~I~~i~~~~~~----~~~~~~iD~~g~~v~PG~ID~H~H~~~~~~~----- 72 (486)
T PLN02942 4 STKILIKGGTVVNAHHQ--ELADVYVEDGIIVAVAPNLKV----PDDVRVIDATGKFVMPGGIDPHTHLAMPFMG----- 72 (486)
T ss_pred CCcEEEECcEEEcCCCC--eEeEEEEECCEEEEEcCCCCC----CCCCeEEECCCCEEecCEeeeeeccCcccCC-----
Confidence 45689999999986543 567999999999999875321 1356899999999999999999998543100
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCCCCeEEEeCCCCCCCCCCCCChHHhhhhCCCCeEEEEeCCCchhhhcHHHHHHcCCCC
Q 008063 124 LRGVSHKDEFVRRVKEAVKNSKKGSWILGGGWNNDLWGGDLPMASWIDDITPHNPVWLSRMDGHMGLANSVALQLVGITN 203 (579)
Q Consensus 124 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~p~~~~ld~~~~~~p~~~~~~~~~~~~~n~~~~~~~g~~~ 203 (579)
.
T Consensus 73 ----------------------------------------~--------------------------------------- 73 (486)
T PLN02942 73 ----------------------------------------T--------------------------------------- 73 (486)
T ss_pred ----------------------------------------C---------------------------------------
Confidence 0
Q ss_pred CCCCCCCCeEEeCCCCCcCEEEhHhHHHHhcccCCCCCHHHHHHHHHHHHHHHHhcCccEEEeCCcCCCCCccccchHHH
Q 008063 204 LSEDPNGGTIMKTSSGEPTGLLIDAAMKLILPWIPEVSVDERREALLRASNLALSRGVTTVVDFGRYYPGESVQLSWEDF 283 (579)
Q Consensus 204 ~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Git~v~~~~~~~~~~~~~~~~~~~ 283 (579)
...+.+..+.+.+++.|+|++.|+.. +. .......
T Consensus 74 ----------------------------------------~~~ed~~s~s~aAl~gGvTTv~D~~~--~~---~~~~~~~ 108 (486)
T PLN02942 74 ----------------------------------------ETIDDFFSGQAAALAGGTTMHIDFVI--PV---NGNLLAG 108 (486)
T ss_pred ----------------------------------------cccchHHHHHHHHHcCCCeEEEeCCC--CC---CCCHHHH
Confidence 00123344667789999999999732 11 1122233
Q ss_pred HHHHHHHhhcCCCeeEEEEccCccch-----hhHHHHHHhcCCCCCCceEEceEEEEEcCccCCCcccccCCCCCCCCCC
Q 008063 284 ADVYQWASYSEKMKIRVCLFFPLETW-----SSLADLINKTGHVLSDWVYLGGVKAFADGSLGSNSALFHEPYADEPHNY 358 (579)
Q Consensus 284 ~~~~~~~~~~~~~~i~v~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~g~k~~~dg~~~~~~~~~~~~~~~~~~~~ 358 (579)
.+.+........ +++......... .+..++.... ...+++++..- ..+
T Consensus 109 ~~~~~~~~~~~~--~d~~~~~~~~~~~~~~~~e~~~l~~~~--------gv~~~k~~~~~---------~~~-------- 161 (486)
T PLN02942 109 YEAYEKKAEKSC--MDYGFHMAITKWDDTVSRDMETLVKEK--------GINSFKFFMAY---------KGS-------- 161 (486)
T ss_pred HHHHHHHHhhcC--CCEEEEEEecCCcHhHHHHHHHHHHhC--------CCceEEEEEec---------CCC--------
Confidence 333332222222 333332221111 1111221110 11235554310 001
Q ss_pred cccCCCHHHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHH------------------------HHHHHhcCCCCCCce
Q 008063 359 GLQVMELESLLSMTMASDKSGLQVAIHAIGDRANDLVLDMY------------------------KSVVVTTGKRDQRFR 414 (579)
Q Consensus 359 ~~~~~~~~~l~~~~~~a~~~g~~i~iH~~g~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~ 414 (579)
...+++.+.+.++.+++.|.++++|+......+...+.+ +......+..+.+.+
T Consensus 162 --~~~~~~~l~~~~~~a~~~~~~v~~HaE~~~~~~~~~~~~~~~G~~~~~~~~~~rP~~~E~~av~~~~~la~~~g~~~~ 239 (486)
T PLN02942 162 --LMVTDELLLEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATARAIRLAKFVNTPLY 239 (486)
T ss_pred --CCCCHHHHHHHHHHHHhcCCeEEEEcCCHHHHHHHHHHHHHcCCCChhhhhccCCchHHHHHHHHHHHHHHHhCCCEE
Confidence 125788999999999999999999975433222222111 111111233467899
Q ss_pred EeeccCCCh-hhHHHHhhCCc--EEEecccccccchhHHHH----------hhChhhhhhhhhhHHHHHHCCCeeeecCC
Q 008063 415 IEHAQHLAS-GTAARFGDQGI--VASMQPQHLLDDADSARK----------KLGVDRAERESYLFQSLLANNALLALGSD 481 (579)
Q Consensus 415 i~H~~~~~~-~~~~~~~~~~i--~~~~~p~~~~~~~~~~~~----------~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD 481 (579)
+.|+..... ++++.+++.|+ +...+|++...+.+.+.+ ..+|.|.+.....+..++++|+++++|||
T Consensus 240 i~H~s~~~~~e~i~~~k~~G~~Vt~e~~ph~L~l~~~~~~~~~~~~~~~~k~~PPlr~~~~~~~L~~~l~~G~i~~igTD 319 (486)
T PLN02942 240 VVHVMSIDAMEEIARARKSGQRVIGEPVVSGLVLDDSKLWDPDFTIASKYVMSPPIRPAGHGKALQAALSSGILQLVGTD 319 (486)
T ss_pred EEECCCHHHHHHHHHHHHCCCcEEEEECchhheeCHHHhcCcccccCcceEECCCCCCHHHHHHHHHHhcCCceEEEECC
Confidence 999999888 89999998885 445666666544443321 22444444555567899999999999999
Q ss_pred CCCCCCC-------HHH-----------HHHHHHcccCCCCCCCCCCCCCCCHHHHHHHHcHHHHHhcccCCccccccCC
Q 008063 482 WPVADIN-------PLC-----------AIRTAMKRIPPGWDNAWIPSERISLTDALIAHTLSAARACFLENDVGSLSPG 543 (579)
Q Consensus 482 ~~~~~~~-------~~~-----------~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~npA~~lgl~~~~G~I~~G 543 (579)
.+..+.+ .|. .+..++.+. .....++++++++++|.|||+++|+++++|+|++|
T Consensus 320 h~p~~~~~k~~~~~~~~~~~~G~~g~e~~l~~~~~~~--------~~~~~i~~~~~l~~~t~~pA~~lgl~~~~G~l~~G 391 (486)
T PLN02942 320 HCPFNSTQKAFGKDDFRKIPNGVNGIEERMHLVWDTM--------VESGQISPTDYVRVTSTECAKIFNIYPRKGAILAG 391 (486)
T ss_pred CCCCChHHhhcccCCHhhCCCCcccHHHHHHHHHHHH--------HHcCCCCHHHHHHHHHHHHHHHhCCCCCCCCcCCC
Confidence 7644311 111 111111110 02335999999999999999999997778999999
Q ss_pred CcccEEEeCCCCCC--Chhhc-----------c--CCeEEEEEECCEEeC
Q 008063 544 KIADFVILSTSSWE--DFAAE-----------V--SASIEATYVSGVQAY 578 (579)
Q Consensus 544 ~~ADlvvld~~~~~--~~~~~-----------~--~~~v~~v~v~G~~v~ 578 (579)
+.||||++|.++.. +...+ . ..+|..||++|++||
T Consensus 392 ~~ADlv~vd~~~~~~v~~~~~~s~~~~~py~g~~l~g~v~~tiv~G~~v~ 441 (486)
T PLN02942 392 SDADIIILNPNSTFTISAKTHHSRIDTNVYEGRRGKGKVEVTISQGRVVW 441 (486)
T ss_pred CcCCEEEEcCCccEEEcHHHccccCCCCCccCcEeeeeEEEEEECCEEEE
Confidence 99999999987643 11111 0 568999999999987
|
|
| >PRK13309 ureC urease subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-31 Score=274.77 Aligned_cols=197 Identities=16% Similarity=0.134 Sum_probs=137.2
Q ss_pred CCHHHHHHHHHHHHHCCCeEEEEecch---HHHHHHHHHHHHHHHhcCCCCCCceEeeccC---CChhhHHHHhh-CCcE
Q 008063 363 MELESLLSMTMASDKSGLQVAIHAIGD---RANDLVLDMYKSVVVTTGKRDQRFRIEHAQH---LASGTAARFGD-QGIV 435 (579)
Q Consensus 363 ~~~~~l~~~~~~a~~~g~~i~iH~~g~---~~~~~~~~~~~~~~~~~~~~~~~~~i~H~~~---~~~~~~~~~~~-~~i~ 435 (579)
.+++.+.+.++.|+++++++.+|+..- ..++.+++.+ .+...+..|... .+..++-++.. .++-
T Consensus 229 ~t~~~L~~aLe~A~~~gv~VaiH~d~lnE~g~vE~~~aa~---------~grpih~~H~~Gaggghapd~~~~~~~~~~~ 299 (572)
T PRK13309 229 ATAAALRHALRVADEVDIQVAVHTDSLNECGYVEDTIDAF---------EGRTIHTFHTEGAGGGHAPDIIKVASQTNVL 299 (572)
T ss_pred cCHHHHHHHHHHHHhcCCEEEEeCCccccchhHHHHHHHh---------CCCceeeeeccCcccCCchhHHHhcCCCCcc
Confidence 478899999999999999999997522 3333332222 223445555432 22233333332 2332
Q ss_pred EE-e-----------------------cccccccchhHHHHhhChhhhhhhhhhHHHHHHCCCeeeecCCCCC---CCCC
Q 008063 436 AS-M-----------------------QPQHLLDDADSARKKLGVDRAERESYLFQSLLANNALLALGSDWPV---ADIN 488 (579)
Q Consensus 436 ~~-~-----------------------~p~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD~~~---~~~~ 488 (579)
.+ + ......++..+..++++++ ..++++.|++.|+++++|||++. .+.+
T Consensus 300 ~~st~pt~p~~~~~~~e~~~m~m~~h~l~~~~~~D~~~a~srig~e----~~~a~~~l~daGa~~~~gSD~pv~gr~~~~ 375 (572)
T PRK13309 300 PSSTNPTLPYGVNSQAELFDMIMVCHNLNPNVPADVAFAESRVRPE----TIAAENVLHDMGVISMFSSDSQAMGRVGEN 375 (572)
T ss_pred cCCCCCCCCCcccchHhhhchhhhhccCCCCCCCChhHHHHhhCch----hhcchhHHHhCCCEEEEcCCCCcccCCccc
Confidence 22 1 1111224455556667764 45789999999999999999987 4688
Q ss_pred HHHHHHHHHcccCCCCC--CCCCCCCCCCHHHHHHHHcHHHHHhcccCCccccccCCCcccEEEeCCCCCCChhhccCCe
Q 008063 489 PLCAIRTAMKRIPPGWD--NAWIPSERISLTDALIAHTLSAARACFLENDVGSLSPGKIADFVILSTSSWEDFAAEVSAS 566 (579)
Q Consensus 489 ~~~~~~~~~~~~~~~~~--~~~~~~~~ls~~~al~~~T~npA~~lgl~~~~G~I~~G~~ADlvvld~~~~~~~~~~~~~~ 566 (579)
++..++.++.|....+. ........++..++|+++|.|||+++|+++.+|+|++||.|||||||.++|. .+
T Consensus 376 p~~~iq~Av~rk~~~g~l~~~~~~~~~~~v~~aL~~yT~n~A~a~g~e~~~GsLe~Gk~ADlvvld~d~f~-------~~ 448 (572)
T PRK13309 376 WLRAIQTADAMKAARGKLPEDAAGNDNFRVLRYVAKITINPAITQGVSHVIGSVEVGKMADLVLWEPRFFG-------AK 448 (572)
T ss_pred HHHHHHHHHHHHhccCCCCccCCCcccccHHHHHHHHhHHHHHHcCcccCccccCCCCcCCEEEEchhhcC-------CC
Confidence 99999999876432111 1112245689999999999999999999999999999999999999998875 25
Q ss_pred EEEEEECCEEeCC
Q 008063 567 IEATYVSGVQAYP 579 (579)
Q Consensus 567 v~~v~v~G~~v~~ 579 (579)
+..||++|++||.
T Consensus 449 ~~~vi~~G~iv~~ 461 (572)
T PRK13309 449 PKMVIKGGMINWA 461 (572)
T ss_pred ccEEEECCEEEEe
Confidence 7899999999983
|
|
| >PRK07583 cytosine deaminase-like protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-30 Score=275.89 Aligned_cols=387 Identities=19% Similarity=0.218 Sum_probs=238.7
Q ss_pred CCccEEEEcCeEEeCCC----------CCCeeeEEEEECCEEEEecChHHHHhhccCCCeEEeCCCCeeecccccccccc
Q 008063 43 LEADLVVTNGVIFTGDD----------SLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHF 112 (579)
Q Consensus 43 ~~~~~likn~~v~~~~~----------~~~~~~~v~I~~GkI~~Ig~~~~~~~~~~~~~~viD~~g~~V~PG~ID~H~H~ 112 (579)
.++.++|+|+++-+... ......+|.|+||||++|++..+. +.+.++||++|++|+|||||+|+|+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~dg~i~~i~~~~~~----~~~~~~id~~g~~v~Pg~id~H~Hl 84 (438)
T PRK07583 9 ESGRYWLKNARVPAALLEGGVPPGDTLEGLVLVDIEIADGKIAAILPAGGA----PDELPAVDLKGRMVWPCFVDMHTHL 84 (438)
T ss_pred CCCcEEEeccccccccccCccCCCcCCCCcEEEEEEEECCEEEEEecCCCC----CCCCceecCCCCcccCCcccceecc
Confidence 45679999999755421 112456999999999999986431 1357899999999999999999998
Q ss_pred cccCccccccccCCCCCHHHHHHHHHHHHHcCCCCCeEEEeCCCCCCCCCCCCChHHhhhhCCCCeEEEEeCCCchhhhc
Q 008063 113 IPGGLQMARVKLRGVSHKDEFVRRVKEAVKNSKKGSWILGGGWNNDLWGGDLPMASWIDDITPHNPVWLSRMDGHMGLAN 192 (579)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~p~~~~ld~~~~~~p~~~~~~~~~~~~~n 192 (579)
........ .. ....+..+..+.+.
T Consensus 85 d~~~~~~~-~~-~~~~~~~~~~~~~~------------------------------------------------------ 108 (438)
T PRK07583 85 DKGHIWPR-SP-NPDGTFPGALDAVT------------------------------------------------------ 108 (438)
T ss_pred ccceecCC-CC-CCCCCHHHHHHHHH------------------------------------------------------
Confidence 44311000 00 00000111100000
Q ss_pred HHHHHHcCCCCCCCCCCCCeEEeCCCCCcCEEEhHhHHHHhcccCCCCCHHHHHHHHHHHHHHHHhcCccEEEeCCcCCC
Q 008063 193 SVALQLVGITNLSEDPNGGTIMKTSSGEPTGLLIDAAMKLILPWIPEVSVDERREALLRASNLALSRGVTTVVDFGRYYP 272 (579)
Q Consensus 193 ~~~~~~~g~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Git~v~~~~~~~~ 272 (579)
.......+.+++.+.+..+.+.+...|+|++..+-..++
T Consensus 109 -----------------------------------------~~~~~~~~~~~~~~r~~~~~~~a~~~Gtt~vRt~vd~~~ 147 (438)
T PRK07583 109 -----------------------------------------ADREAHWSAEDLYRRMEFGLRCAYAHGTSAIRTHLDSFA 147 (438)
T ss_pred -----------------------------------------HHhhccCCHHHHHHHHHHHHHHHHHhChhhEEeeeccCC
Confidence 011123345777888999999999999997766432111
Q ss_pred CCccccchHHHHHHHHHHhhcCCCeeEEEEccCccc--hhhHHHHHHhcCCCCCCceEEceEEEEEcCccCCCcccccCC
Q 008063 273 GESVQLSWEDFADVYQWASYSEKMKIRVCLFFPLET--WSSLADLINKTGHVLSDWVYLGGVKAFADGSLGSNSALFHEP 350 (579)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~g~k~~~dg~~~~~~~~~~~~ 350 (579)
... ...++...+..+.. ...+...++...+... .+...+..+.... .+|+. ++ . +
T Consensus 148 ~~~-~~~~~~i~~~~~~~--~~~~~~~~v~~~p~~~~~~~~~~eL~~~v~~-------~~gv~-------g~---~---~ 204 (438)
T PRK07583 148 PQA-AISWEVFAELREAW--AGRIALQAVSLVPLDAYLTDAGERLADLVAE-------AGGLL-------GG---V---T 204 (438)
T ss_pred CCc-ccHHHHHHHHHHHh--hccCeEEEEEecChhhccCchHHHHHHHHHH-------cCCEE-------eC---C---C
Confidence 111 11222222333322 2233444443222111 0111111111000 00110 00 0 0
Q ss_pred CCCCCCCCcccCCCHHHHHHHHHHHHHCCCeEEEEecch-HHHHHHHHHHHHHHHhcCCCCCCceEeeccCCC-------
Q 008063 351 YADEPHNYGLQVMELESLLSMTMASDKSGLQVAIHAIGD-RANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLA------- 422 (579)
Q Consensus 351 ~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~i~iH~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~i~H~~~~~------- 422 (579)
+.. . -..+.+.++++.|+++|+++.+|+.+. ......++.+.+.....+. ..+..+.|+..+.
T Consensus 205 ~~~-~-------~~d~~l~~i~~lA~~~G~~v~vH~~E~~~~~~~~l~~~~~~~~~~G~-~~~v~i~H~~~l~~~~~~~~ 275 (438)
T PRK07583 205 YMN-P-------DLDAQLDRLFRLARERGLDLDLHVDETGDPASRTLKAVAEAALRNGF-EGKVTCGHCCSLAVQPEEQA 275 (438)
T ss_pred CCC-C-------CHHHHHHHHHHHHHHhCCCcEEeECCCCCchHHHHHHHHHHHHHhCC-CCCEEEEeccchhcCCHHHH
Confidence 100 0 145789999999999999999999633 2223334444444444554 3479999999876
Q ss_pred hhhHHHHhhCCcEEEecccccccchhHHHHhhChhhhhhhhhhHHHHHHCCCeeeecCCCCCC------CCCHHHHHHHH
Q 008063 423 SGTAARFGDQGIVASMQPQHLLDDADSARKKLGVDRAERESYLFQSLLANNALLALGSDWPVA------DINPLCAIRTA 496 (579)
Q Consensus 423 ~~~~~~~~~~~i~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD~~~~------~~~~~~~~~~~ 496 (579)
+++++++++.|+.+++||.++.......... ..+. +...+++.+.++|+++++|||+..+ ..++++.+..+
T Consensus 276 ~~~i~~la~~gv~vv~~P~~~~~l~~~~~~~--~p~~-~~~~~v~~l~~aGV~valGtD~~~d~~~p~g~~~~~~~~~~a 352 (438)
T PRK07583 276 QATIALVAEAGIAIVSLPMCNLYLQDRQPGR--TPRW-RGVTLVHELKAAGIPVAVASDNCRDPFYAYGDHDMLEVFREA 352 (438)
T ss_pred HHHHHHHHHcCCeEEECcchhhhhcCCCcCC--CCCC-CCcchHHHHHHCCCeEEEEeCCCCCCCCCCCCcCHHHHHHHH
Confidence 4789999999999999999875322111000 1122 4567899999999999999997432 25677777766
Q ss_pred HcccCCCCCCCCCCCCCCCHHHHHHHHcHHHHHhcccCCccccccCCCcccEEEeCCCCCCCh-hhccCCeEEEEEECCE
Q 008063 497 MKRIPPGWDNAWIPSERISLTDALIAHTLSAARACFLENDVGSLSPGKIADFVILSTSSWEDF-AAEVSASIEATYVSGV 575 (579)
Q Consensus 497 ~~~~~~~~~~~~~~~~~ls~~~al~~~T~npA~~lgl~~~~G~I~~G~~ADlvvld~~~~~~~-~~~~~~~v~~v~v~G~ 575 (579)
+... ..+.+++++|+++|.|||+.+|+++ +|+|++|+.|||||+|.+++.+. .. ...+..||++|+
T Consensus 353 ~~~~----------~~~~~~~~al~~~T~~~A~~lg~~~-~G~i~~G~~ADlvv~d~~~~~~~~~~--~~~~~~V~~~G~ 419 (438)
T PRK07583 353 VRIL----------HLDHPYDDWPAAVTTTPADIMGLPD-LGRIAVGAPADLVLFKARSFSELLSR--PQSDRIVLRAGK 419 (438)
T ss_pred HHHH----------hcCCcHHHHHHHHhHHHHHHcCCCC-CCCcCCCCCCCEEEEcCCCHHHHHhc--CCCccEEEECCE
Confidence 5321 1246899999999999999999987 89999999999999999997643 22 236778999999
Q ss_pred EeC
Q 008063 576 QAY 578 (579)
Q Consensus 576 ~v~ 578 (579)
+|.
T Consensus 420 ~v~ 422 (438)
T PRK07583 420 PID 422 (438)
T ss_pred Eec
Confidence 885
|
|
| >cd01296 Imidazolone-5PH Imidazolonepropionase/imidazolone-5-propionate hydrolase (Imidazolone-5PH) catalyzes the third step in the histidine degradation pathway, the hydrolysis of (S)-3-(5-oxo-4,5-dihydro-3H-imidazol-4-yl)propanoate to N-formimidoyl-L-glutamate | Back alignment and domain information |
|---|
Probab=99.98 E-value=1e-30 Score=272.09 Aligned_cols=273 Identities=23% Similarity=0.264 Sum_probs=179.1
Q ss_pred CCCHHHHHHHHHHHHHHHHhcCccEEEeCCcCCCCCccccchHHHHHHHHHHhhcCCCeeEEEEc--cCccc-h---hh-
Q 008063 239 EVSVDERREALLRASNLALSRGVTTVVDFGRYYPGESVQLSWEDFADVYQWASYSEKMKIRVCLF--FPLET-W---SS- 311 (579)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~Git~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~--~~~~~-~---~~- 311 (579)
.+++++++......+..++++|+|++.+...+ +..+. ......+..+++.....+.+..+.. ...+. . +.
T Consensus 84 ~~~~~d~~~~a~~~~~~~~~~Gvt~~~~~~~~--~~~~~-~~~~~~~a~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~~ 160 (371)
T cd01296 84 AASEDELFASALRRLARMLRHGTTTVEVKSGY--GLDLE-TELKMLRVIRRLKEEGPVDLVSTFLGAHAVPPEYKGREEY 160 (371)
T ss_pred hCCHHHHHHHHHHHHHHHHHCCceEEEecccC--CCCHH-HHHHHHHHHHHHHhhCCCceEeeeeecccCCcccCChHHH
Confidence 45678899999999999999999999884211 11111 1122334444444433444444332 11111 0 11
Q ss_pred ----HHHHHHhcCCCCCCceEEceEEEEEcCccCCCcccccCCCCCCCCCCcccCCCHHHHHHHHHHHHHCCCeEEEEec
Q 008063 312 ----LADLINKTGHVLSDWVYLGGVKAFADGSLGSNSALFHEPYADEPHNYGLQVMELESLLSMTMASDKSGLQVAIHAI 387 (579)
Q Consensus 312 ----~~~~~~~~~~~~~~~~~~~g~k~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~i~iH~~ 387 (579)
..+....... .. ...+++++..+ ...+.+.++++++.|+++|+++.+|+.
T Consensus 161 ~~~~~~~~~~~~~~--~~--~~~~~~~~~~~----------------------~~~~~~~~~~~~~~A~~~g~~v~~H~~ 214 (371)
T cd01296 161 IDLVIEEVLPAVAE--EN--LADFCDVFCEK----------------------GAFSLEQSRRILEAAKEAGLPVKIHAD 214 (371)
T ss_pred HHHHHHHHHHHHHH--hC--CCCEEEEeecC----------------------CccCHHHHHHHHHHHHHCCCeEEEEEc
Confidence 0111111000 00 01223332111 114578999999999999999999997
Q ss_pred chHHHHHHHHHHHHHHHhcCCCCCCceEeeccCCChhhHHHHhhCCcEEEecccccccchhHHHHhhChhhhhhhhhhHH
Q 008063 388 GDRANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLASGTAARFGDQGIVASMQPQHLLDDADSARKKLGVDRAERESYLFQ 467 (579)
Q Consensus 388 g~~~~~~~~~~~~~~~~~~~~~~~~~~i~H~~~~~~~~~~~~~~~~i~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~l~ 467 (579)
+....... +.. ...+ ...+.|+..+++++++++++.|+.+++||.++.. ++ ...++++
T Consensus 215 e~~~~~~~----~~~-~~~g----~~~i~H~~~~~~~~i~~la~~g~~v~~~P~~~~~--------l~-----~~~~~~~ 272 (371)
T cd01296 215 ELSNIGGA----ELA-AELG----ALSADHLEHTSDEGIAALAEAGTVAVLLPGTAFS--------LR-----ETYPPAR 272 (371)
T ss_pred CcCCCCHH----HHH-HHcC----CCeeHHhcCCCHHHHHHHHHcCCeEEEChHHHHH--------hC-----CCCCCHH
Confidence 54211111 111 1122 4578999999999999999999999999998652 22 2256889
Q ss_pred HHHHCCCeeeecCCC-CCCCC--CHHHHHHHHHcccCCCCCCCCCCCCCCCHHHHHHHHcHHHHHhcccCCccccccCCC
Q 008063 468 SLLANNALLALGSDW-PVADI--NPLCAIRTAMKRIPPGWDNAWIPSERISLTDALIAHTLSAARACFLENDVGSLSPGK 544 (579)
Q Consensus 468 ~l~~~Gi~v~~gsD~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~npA~~lgl~~~~G~I~~G~ 544 (579)
.++++|+++++|||+ +.... +++..++.++. ..+++++++++++|.|||+.+|+++++|+|++||
T Consensus 273 ~l~~~Gv~v~lgsD~~p~~~~~~~l~~~~~~~~~------------~~~l~~~~al~~aT~~~A~~lg~~~~~G~i~~G~ 340 (371)
T cd01296 273 KLIDAGVPVALGTDFNPGSSPTSSMPLVMHLACR------------LMRMTPEEALTAATINAAAALGLGETVGSLEVGK 340 (371)
T ss_pred HHHHCCCcEEEecCCCCCCChHHHHHHHHHHHHH------------hcCCCHHHHHHHHHHHHHHHhCCCCCceeeCCCC
Confidence 999999999999996 33221 24445554442 2358999999999999999999998899999999
Q ss_pred cccEEEeCCCCCCC-hhhccCCeEEEEEECC
Q 008063 545 IADFVILSTSSWED-FAAEVSASIEATYVSG 574 (579)
Q Consensus 545 ~ADlvvld~~~~~~-~~~~~~~~v~~v~v~G 574 (579)
.|||||+|.+++.. +.......|..||++|
T Consensus 341 ~ADlvv~d~~~~~~~~~~~~~~~v~~v~~~G 371 (371)
T cd01296 341 QADLVILDAPSYEHLAYRFGVNLVEYVIKNG 371 (371)
T ss_pred CcCEEEECCCchHhhhhhcCCCCceEEEeCc
Confidence 99999999999773 3333455899999998
|
In bacteria, the enzyme is part of histidine utilization (hut) operon. |
| >COG0402 SsnA Cytosine deaminase and related metal-dependent hydrolases [Nucleotide transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=99.98 E-value=5.7e-31 Score=277.09 Aligned_cols=375 Identities=24% Similarity=0.306 Sum_probs=248.9
Q ss_pred ccEEEEcCeEEeCCCCC-CeeeEEEEECCEEEEecChHHHHhhccCCCeEEeCCCCeeecccccccccccccCccccccc
Q 008063 45 ADLVVTNGVIFTGDDSL-LFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHFIPGGLQMARVK 123 (579)
Q Consensus 45 ~~~likn~~v~~~~~~~-~~~~~v~I~~GkI~~Ig~~~~~~~~~~~~~~viD~~g~~V~PG~ID~H~H~~~~~~~~~~~~ 123 (579)
+.++++|..++..++.. ...+++.|+||||+.|++..+.. ++.++||++|++|+|||||+|+|+.+...
T Consensus 2 ~~~~i~~~~~~~~d~~~~~~~~~~~i~~g~I~~ig~~~~~~----~~~~~iD~~~~lv~Pgfvn~H~H~~~t~~------ 71 (421)
T COG0402 2 TMLLIRGDLLLTNDPEGRIEDGDLVIEDGKIVAIGANAEGP----PDEEVIDAKGKLVLPGFVNAHTHLDQTLL------ 71 (421)
T ss_pred cceeeeCcEEeecCcccceeeeeEEEcCCEEEEeCCcCCCC----CCceeecCCCCEeccCccccccchHHHHH------
Confidence 35788999888863332 35689999999999999875432 46789999999999999999999755432
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCCCCeEEEeCCCCCCCCCCCCChHHhhh-hCCCCeEEEEeCCCchhhhcHHHHHHcCCC
Q 008063 124 LRGVSHKDEFVRRVKEAVKNSKKGSWILGGGWNNDLWGGDLPMASWIDD-ITPHNPVWLSRMDGHMGLANSVALQLVGIT 202 (579)
Q Consensus 124 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~p~~~~ld~-~~~~~p~~~~~~~~~~~~~n~~~~~~~g~~ 202 (579)
.+... ..+...|+.. +++..
T Consensus 72 -~g~~~---------------------------------~~~l~~wl~~~~~~~~------------------------- 92 (421)
T COG0402 72 -RGLAD---------------------------------DLPLLEWLERYVWPRE------------------------- 92 (421)
T ss_pred -hhhhc---------------------------------ccchHHHHHHHHhHHH-------------------------
Confidence 11110 1112233333 11100
Q ss_pred CCCCCCCCCeEEeCCCCCcCEEEhHhHHHHhcccCCCCCHHHHHHHHHHHHHHHHhcCccEEEeCCcCCCCCccccchHH
Q 008063 203 NLSEDPNGGTIMKTSSGEPTGLLIDAAMKLILPWIPEVSVDERREALLRASNLALSRGVTTVVDFGRYYPGESVQLSWED 282 (579)
Q Consensus 203 ~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Git~v~~~~~~~~~~~~~~~~~~ 282 (579)
....++++.+.....++..++++|+|++..+... .+.
T Consensus 93 ----------------------------------~~~~~~e~~~~~a~~~~~e~l~~G~t~~~~~~~~---------~~~ 129 (421)
T COG0402 93 ----------------------------------ARLLTEEDLYARALLALLEMLRNGTTTARTHVDV---------VAE 129 (421)
T ss_pred ----------------------------------hhcCCHHHHHHHHHHHHHHHHhcCccccccccch---------hhh
Confidence 0124568899999999999999999996665421 111
Q ss_pred H-HHHHHHHhhcCCCeeEEEEccCccc--h-------hh----HHHHHHhcCCCCCCceEEceEEEEEcCccCCCccccc
Q 008063 283 F-ADVYQWASYSEKMKIRVCLFFPLET--W-------SS----LADLINKTGHVLSDWVYLGGVKAFADGSLGSNSALFH 348 (579)
Q Consensus 283 ~-~~~~~~~~~~~~~~i~v~~~~~~~~--~-------~~----~~~~~~~~~~~~~~~~~~~g~k~~~dg~~~~~~~~~~ 348 (579)
. ...++.+. +.++++........ + .+ ..+.+.. +.+.+...+. ...+
T Consensus 130 ~~~~~~~a~~---~~g~r~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~---------~~p~ 190 (421)
T COG0402 130 SADAAFEAAL---EVGLRAVLGPVLQDVAFPDPGAETDEELEETEELLRE-------AHGLGRDVVG---------LAPH 190 (421)
T ss_pred hHHHHHHHHH---HhCCeeEeeeccccCCCCcccccchHHHHHHHHHHHH-------HhcCCCeeEE---------EecC
Confidence 1 11222222 23344433221111 0 11 1122221 1111111110 0112
Q ss_pred CCCCCCCCCCcccCCCHHHHHHHHHHHHHCCCeEEEEecch-HHHHHHHH----HHHHHHHhcCCCCCCceEeeccCCCh
Q 008063 349 EPYADEPHNYGLQVMELESLLSMTMASDKSGLQVAIHAIGD-RANDLVLD----MYKSVVVTTGKRDQRFRIEHAQHLAS 423 (579)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~i~iH~~g~-~~~~~~~~----~~~~~~~~~~~~~~~~~i~H~~~~~~ 423 (579)
.+ ..++++.++.+.+.++++|+++++|+.+. .++....+ .........|..+.+..+.||.++++
T Consensus 191 ~~----------~~~~~~~~~~~~~l~~~~~~~v~iH~~E~~~e~~~~~~~~g~~~~~~~~~~g~l~~~~~~~H~~~~~~ 260 (421)
T COG0402 191 FP----------YTVSPELLESLDELARKYGLPVHIHLAETLDEVERVLEPYGARPVERLDLLGLLGSHTLLAHCVHLSE 260 (421)
T ss_pred CC----------CCCCHHHHHHHHHHHhcCCCceEEEecCcHHHHHHHHhhcCCCHHHHHHHcCCCCCCeEEEEeccCCH
Confidence 22 23789999999999999999999999855 45555555 22223455677778999999999999
Q ss_pred hhHHHHhhCCcEEEecccccccchhHHHHhhChhhhhhhhhhHHHHHHCCCeeeecCCCCCCC--CCHHHHHHHHHcccC
Q 008063 424 GTAARFGDQGIVASMQPQHLLDDADSARKKLGVDRAERESYLFQSLLANNALLALGSDWPVAD--INPLCAIRTAMKRIP 501 (579)
Q Consensus 424 ~~~~~~~~~~i~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD~~~~~--~~~~~~~~~~~~~~~ 501 (579)
++++++++.|+.+++||.+|. +++ ....|++++.+.|+++++|||+..+. .++|.++..+.....
T Consensus 261 ~e~~~l~~~g~~v~~cP~sN~--------~L~-----sG~~p~~~~~~~gv~v~~gTD~~~~~~~~d~l~~~~~a~~l~~ 327 (421)
T COG0402 261 EELELLAESGASVVHCPRSNL--------KLG-----SGIAPVRRLLERGVNVALGTDGAASNNVLDMLREMRTADLLQK 327 (421)
T ss_pred HHHHHHhhCCCeEEECcchhc--------ccc-----CCCCCHHHHHHcCCCEEEecCCccccChHHHHHHHHHHHHHHH
Confidence 999999999999999999997 444 44668999999999999999986554 789999888854221
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHcHHHHHhcccCCccccccCCCcccEEEeCCCCCC--Chh---hc----cCCeEEEEEE
Q 008063 502 PGWDNAWIPSERISLTDALIAHTLSAARACFLENDVGSLSPGKIADFVILSTSSWE--DFA---AE----VSASIEATYV 572 (579)
Q Consensus 502 ~~~~~~~~~~~~ls~~~al~~~T~npA~~lgl~~~~G~I~~G~~ADlvvld~~~~~--~~~---~~----~~~~v~~v~v 572 (579)
... ......... ++++++|.|+|++||+ +++|+|++||.|||||+|.+... ... .+ ....|..||+
T Consensus 328 ~~~---~~~~~~~~~-~~l~~aT~~gA~alg~-~~~G~le~G~~ADlvvld~~~~~~~~~~~~~~~v~~~~~~~v~~v~~ 402 (421)
T COG0402 328 LAG---GLLAAQLPG-EALDMATLGGAKALGL-DDIGSLEVGKKADLVVLDASAPHLAPLRPVSRLVFAAGGKDVDRVLV 402 (421)
T ss_pred hhc---CCCcccchH-HHHHHHHhhHHHHcCC-cccCCcccccccCEEEEcCCCCccccccHHHHHHHhcCCCceeEEEE
Confidence 110 001111222 4999999999999999 45999999999999999987632 111 11 1448999999
Q ss_pred CCEEeC
Q 008063 573 SGVQAY 578 (579)
Q Consensus 573 ~G~~v~ 578 (579)
+|+.++
T Consensus 403 ~g~~v~ 408 (421)
T COG0402 403 DGRLVM 408 (421)
T ss_pred CCEEEE
Confidence 999875
|
|
| >PRK07627 dihydroorotase; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=8.3e-31 Score=274.44 Aligned_cols=366 Identities=17% Similarity=0.241 Sum_probs=227.3
Q ss_pred ccEEEEcCeEEeCCCCCCeeeEEEEECCEEEEecChHHHHhhccCCCeEEeCCCCeeecccccccccccccCcccccccc
Q 008063 45 ADLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHFIPGGLQMARVKL 124 (579)
Q Consensus 45 ~~~likn~~v~~~~~~~~~~~~v~I~~GkI~~Ig~~~~~~~~~~~~~~viD~~g~~V~PG~ID~H~H~~~~~~~~~~~~~ 124 (579)
|+++|+|++|+++.+.....++|+|+||||++|++.... ..+.++||++|++|+|||||+|+|+..++..
T Consensus 1 m~~~i~~~~v~~~~~~~~~~~~I~I~~g~I~~i~~~~~~----~~~~~~iDa~g~~vlPG~iD~H~H~~~~g~~------ 70 (425)
T PRK07627 1 MKIHIKGGRLIDPAAGTDRQADLYVAAGKIAAIGQAPAG----FNADKTIDASGLIVCPGLVDLSARLREPGYE------ 70 (425)
T ss_pred CeEEEEeeEEECCCCCccceeEEEEECCEEEEecCCCcC----CCCCeEEECCCCEEeccEEeccccccCCCcc------
Confidence 468999999999866544667999999999999874211 1456899999999999999999998543210
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCCCeEEEeCCCCCCCCCCCCChHHhhhhCCCCeEEEEeCCCchhhhcHHHHHHcCCCCC
Q 008063 125 RGVSHKDEFVRRVKEAVKNSKKGSWILGGGWNNDLWGGDLPMASWIDDITPHNPVWLSRMDGHMGLANSVALQLVGITNL 204 (579)
Q Consensus 125 ~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~p~~~~ld~~~~~~p~~~~~~~~~~~~~n~~~~~~~g~~~~ 204 (579)
T Consensus 71 -------------------------------------------------------------------------------- 70 (425)
T PRK07627 71 -------------------------------------------------------------------------------- 70 (425)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCeEEeCCCCCcCEEEhHhHHHHhcccCCCCCHHHHHHHHHHHHHHHHhcCccEEEeCCcCCCCCccccchHHHH
Q 008063 205 SEDPNGGTIMKTSSGEPTGLLIDAAMKLILPWIPEVSVDERREALLRASNLALSRGVTTVVDFGRYYPGESVQLSWEDFA 284 (579)
Q Consensus 205 ~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Git~v~~~~~~~~~~~~~~~~~~~~ 284 (579)
.++.+....+.++..|+|++.++....+ .....+..
T Consensus 71 ----------------------------------------~~e~~~t~s~aa~~gGvTtv~~~p~~~p----~~~~~~~~ 106 (425)
T PRK07627 71 ----------------------------------------YKATLESEMAAAVAGGVTSLVCPPDTDP----VLDEPGLV 106 (425)
T ss_pred ----------------------------------------ccCcHHHHHHHHHhCCeeEEEeCCCCCC----CCCCHHHH
Confidence 0112344677899999999999853222 22233333
Q ss_pred HHHHHHhhcCCCeeEEEEccCcc------chhhHHHHHHhcCCCCCCceEEceEEEEEcCccCCCcccccCCCCCCCCCC
Q 008063 285 DVYQWASYSEKMKIRVCLFFPLE------TWSSLADLINKTGHVLSDWVYLGGVKAFADGSLGSNSALFHEPYADEPHNY 358 (579)
Q Consensus 285 ~~~~~~~~~~~~~i~v~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~g~k~~~dg~~~~~~~~~~~~~~~~~~~~ 358 (579)
+.+..... .....+++.+.... +..+..+... .|+..+.+.
T Consensus 107 ~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~i~~l~~------------~G~~~fk~~-------------------- 153 (425)
T PRK07627 107 EMLKFRAR-NLNQAHVYPLGALTVGLKGEVLTEMVELTE------------AGCVGFSQA-------------------- 153 (425)
T ss_pred HHHHHHhh-ccCceeEEEeCeEEcCCCccCHHHHHHHHh------------CCEEEEEcC--------------------
Confidence 33333222 22244444333211 1222222211 122222110
Q ss_pred cccCCCHHHHHHHHHHHHHCCCeEEEEecchHHHH---------------------HHHHHHHHHHHhcCCCCCCceEee
Q 008063 359 GLQVMELESLLSMTMASDKSGLQVAIHAIGDRAND---------------------LVLDMYKSVVVTTGKRDQRFRIEH 417 (579)
Q Consensus 359 ~~~~~~~~~l~~~~~~a~~~g~~i~iH~~g~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~i~H 417 (579)
+....+...+.+.++.+++.|.++.+|+....-.+ ....+..+...-.-..+.+.++.|
T Consensus 154 ~~~~~~~~~l~~~~~~~~~~~~~v~~H~E~~~~~~~~~~~~g~~~~~~~~~~~P~~aE~~av~r~~~la~~~~~~~hi~H 233 (425)
T PRK07627 154 NVPVVDTQVLLRALQYASTFGFTVWLRPLDAFLGRGGVAASGAVASRLGLSGVPVAAETIALHTIFELMRVTGARVHLAR 233 (425)
T ss_pred CcccCCHHHHHHHHHHHHhcCCEEEEecCChhhhhCCCcCCCHhHHHcCCCCCCHHHHHHHHHHHHHHHHHHCCcEEEEe
Confidence 01124677899999999999999999996321100 001111111111112345888999
Q ss_pred ccCCCh-hhHHHHhhCC--cEEEecccccccchhHHH------HhhChhhhhhhhhhHHHHHHCCCeeeecCCCCCCC--
Q 008063 418 AQHLAS-GTAARFGDQG--IVASMQPQHLLDDADSAR------KKLGVDRAERESYLFQSLLANNALLALGSDWPVAD-- 486 (579)
Q Consensus 418 ~~~~~~-~~~~~~~~~~--i~~~~~p~~~~~~~~~~~------~~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD~~~~~-- 486 (579)
...... +.+...++.| +++.+||++...+.+.+. +..+|.|..+....+...+++|...+++||++...
T Consensus 234 vSs~~~~~~i~~ak~~g~~vt~Ev~ph~L~l~~~~~~~~~~~~k~~PPLR~~~d~~~L~~~l~~G~id~i~SDHaP~~~~ 313 (425)
T PRK07627 234 LSSAAGVALVRAAKAEGLPVTCDVGVNHVHLIDVDIGYFDSQFRLDPPLRSQRDREAIRAALADGTIDAICSDHTPVDDD 313 (425)
T ss_pred CCCHHHHHHHHHHHHCCCCeEEEeccchheEeHhHHhccCCceEEeCCCCCHHHHHHHHHHHhcCCCcEEEcCCCCCCHH
Confidence 876332 3444455555 788999999886655443 24566776677888999999999999999984322
Q ss_pred --CCHHHHHHHHHcccCCCCC--CCCCCCCCCCHHHHHHHHcHHHHHhcccCCccccccCCCcccEEEeCCCC-CC-Chh
Q 008063 487 --INPLCAIRTAMKRIPPGWD--NAWIPSERISLTDALIAHTLSAARACFLENDVGSLSPGKIADFVILSTSS-WE-DFA 560 (579)
Q Consensus 487 --~~~~~~~~~~~~~~~~~~~--~~~~~~~~ls~~~al~~~T~npA~~lgl~~~~G~I~~G~~ADlvvld~~~-~~-~~~ 560 (579)
..++.....++.+...... ..+..+.+++++++++++|.|||+.+|+. .|+|++|+.||||++|.+. +. +.+
T Consensus 314 ~k~~~~~~~~~G~~g~e~~~pl~~~~~~~~~i~~~~~l~~~t~~pA~~lg~~--~G~l~~G~~ADlvv~d~~~~~~v~~~ 391 (425)
T PRK07627 314 EKLLPFAEATPGATGLELLLPLTLKWADEAKVPLARALARITSAPARVLGLP--AGRLAEGAPADLCVFDPDAHWRVEPR 391 (425)
T ss_pred HccCCHhhCCCCceeHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhCCC--CCcccCCCcCCEEEECCCCcEEEChh
Confidence 1122222221111110000 00113456999999999999999999993 6999999999999999883 43 322
Q ss_pred hcc-------------CCeEEEEEECCEEeCC
Q 008063 561 AEV-------------SASIEATYVSGVQAYP 579 (579)
Q Consensus 561 ~~~-------------~~~v~~v~v~G~~v~~ 579 (579)
++. ..+|..||++|++||.
T Consensus 392 ~~~s~~~~sp~~g~~~~g~v~~t~v~G~~v~~ 423 (425)
T PRK07627 392 ALKSQGKNTPFLGYELPGRVRATLVAGQVAFE 423 (425)
T ss_pred hccccCCCCCCcCCEeeeEEEEEEECCEEEee
Confidence 222 2589999999999873
|
|
| >TIGR02033 D-hydantoinase D-hydantoinase | Back alignment and domain information |
|---|
Probab=99.98 E-value=6.3e-30 Score=273.26 Aligned_cols=210 Identities=18% Similarity=0.178 Sum_probs=139.9
Q ss_pred CCHHHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHH------------------------HHHHHhcCCCCCCceEeec
Q 008063 363 MELESLLSMTMASDKSGLQVAIHAIGDRANDLVLDMY------------------------KSVVVTTGKRDQRFRIEHA 418 (579)
Q Consensus 363 ~~~~~l~~~~~~a~~~g~~i~iH~~g~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~i~H~ 418 (579)
++++.+.+.++.|++++.++++|+..........+.+ +.........+.+.++.|+
T Consensus 160 ~~~~~l~~~~~~a~~~~~~v~~H~E~~~~~~~~~~~~~~~G~~~~~~~~~~~p~~~e~~~v~~~~~~~~~~~~~~~i~H~ 239 (454)
T TIGR02033 160 VDDEELFEILKRAKELGALLQVHAENGDVIAELQARLLAQGKTGPEYHALSRPPESEAEAVARAIALAALANAPLYVVHV 239 (454)
T ss_pred CCHHHHHHHHHHHHhCCCeEEEEcCCHHHHHHHHHHHHHcCCCChhHhhhcCCHHHHHHHHHHHHHHHHHhCCCEEEEEC
Confidence 6889999999999999999999985433332222211 1111111234567889998
Q ss_pred cCC-ChhhHHHHhhCC--cEEEecccccccchhHHHH---hh------ChhhhhhhhhhHHHHHHCCCeeeecCCCCCCC
Q 008063 419 QHL-ASGTAARFGDQG--IVASMQPQHLLDDADSARK---KL------GVDRAERESYLFQSLLANNALLALGSDWPVAD 486 (579)
Q Consensus 419 ~~~-~~~~~~~~~~~~--i~~~~~p~~~~~~~~~~~~---~l------~~~~~~~~~~~l~~l~~~Gi~v~~gsD~~~~~ 486 (579)
... +.++++.+++.| +++.+||+++..+.+.+.. .. +|.|.......+..+++.|+.+++|||+....
T Consensus 240 s~~~~~~~i~~~~~~g~~vt~e~~p~~l~~~~~~~~~~~~~~~~~~~~pPlr~~~~~~~l~~~l~~G~i~~igtDh~p~~ 319 (454)
T TIGR02033 240 STASAVDEIAEAREKGQPVYGETCPQYLLLDDTIYDKPGFEGAKYVCSPPLREKEDQDALWSALSSGALQTVGSDHCPFN 319 (454)
T ss_pred CCHHHHHHHHHHHHCCCeEEEEcCchheeecHHHhcCcccccceeEECCCCCChhhHHHHHHHhhcCCeEEEECCCCCCC
Confidence 773 356777788888 6688999998766555431 11 23333334444779999999999999975443
Q ss_pred CC--------HHH---------HHHHHHcccCCCCCCCCCCCCCCCHHHHHHHHcHHHHHhcccCCccccccCCCcccEE
Q 008063 487 IN--------PLC---------AIRTAMKRIPPGWDNAWIPSERISLTDALIAHTLSAARACFLENDVGSLSPGKIADFV 549 (579)
Q Consensus 487 ~~--------~~~---------~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~npA~~lgl~~~~G~I~~G~~ADlv 549 (579)
.. .+. ++.....-. ....+..++++++++++|.|||++||+++++|+|++|+.||||
T Consensus 320 ~~~k~~~~~~~~~~~~~G~~g~e~~l~~l~~------~~v~~~~~~~~~~~~~~t~~pa~~~gl~~~~G~l~~G~~AD~~ 393 (454)
T TIGR02033 320 FAQKKAIGKDDFTKIPNGGPGVEERMTLLFD------EGVATGRITLEKFVELTSTNPAKIFNMYPRKGTIAVGSDADIV 393 (454)
T ss_pred HHHhhhcccCCHhhCCCCCchHHhHHHHHHH------HHHHcCCCCHHHHHHHHhhHHHHHcCCCCCCCccccCCcCCEE
Confidence 11 111 111110000 0002345899999999999999999997668999999999999
Q ss_pred EeCCCCCC--C------------hhhc-cCCeEEEEEECCEEeC
Q 008063 550 ILSTSSWE--D------------FAAE-VSASIEATYVSGVQAY 578 (579)
Q Consensus 550 vld~~~~~--~------------~~~~-~~~~v~~v~v~G~~v~ 578 (579)
|+|.+... + +... ...+|..||++|++||
T Consensus 394 i~d~~~~~~~~~~~~~~~~~~~p~~g~~~~g~v~~t~v~G~~v~ 437 (454)
T TIGR02033 394 IWDPNRTTVISAETHHDNADYNPFEGFKVQGAVVSVLSRGRVVV 437 (454)
T ss_pred EEcCCcCeeechHHhhccCCCCcccCeEEeeeEEEEEECCEEEE
Confidence 99976421 1 1111 1458999999999987
|
This model represents the D-hydantoinase (dihydropyrimidinase) which primarily converts 5,6-dihydrouracil to 3-ureidopropanoate but also acts on dihydrothymine and hydantoin. The enzyme is a metalloenzyme. |
| >cd01314 D-HYD D-hydantoinases (D-HYD) also called dihydropyrimidases (DHPase) and related proteins; DHPases are a family of enzymes that catalyze the reversible hydrolytic ring opening of the amide bond in five- or six-membered cyclic diamides, like dihydropyrimidine or hydantoin | Back alignment and domain information |
|---|
Probab=99.98 E-value=9e-30 Score=271.15 Aligned_cols=208 Identities=18% Similarity=0.142 Sum_probs=140.6
Q ss_pred CCHHHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHH------------------------HHHHHhcCCCCCCceEeec
Q 008063 363 MELESLLSMTMASDKSGLQVAIHAIGDRANDLVLDMY------------------------KSVVVTTGKRDQRFRIEHA 418 (579)
Q Consensus 363 ~~~~~l~~~~~~a~~~g~~i~iH~~g~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~i~H~ 418 (579)
++++.++++++.+++.|+++++|+.....++...+.+ ..........+.+.++.|+
T Consensus 159 ~s~~~l~~~~~~a~~~g~~v~~H~E~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~e~~~v~~~~~la~~~~~~~~~~H~ 238 (447)
T cd01314 159 VDDEELLDVLKRAKELGALVMVHAENGDVIAELQKKLLAQGKTGPEYHALSRPPEVEAEATARAIRLAELAGAPLYIVHV 238 (447)
T ss_pred CCHHHHHHHHHHHHhcCCeEEEEcCCHHHHHHHHHHHHHcCCCChHHhhhcCCHHHHHHHHHHHHHHHHHhCCCEEEEeC
Confidence 6899999999999999999999985444333332211 0111112234668889998
Q ss_pred cCCCh-hhHHHHhhCCc--EEEecccccccchhHHH---------HhhChhhhhhhhhhHHHHHHCCCeeeecCCCCCCC
Q 008063 419 QHLAS-GTAARFGDQGI--VASMQPQHLLDDADSAR---------KKLGVDRAERESYLFQSLLANNALLALGSDWPVAD 486 (579)
Q Consensus 419 ~~~~~-~~~~~~~~~~i--~~~~~p~~~~~~~~~~~---------~~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD~~~~~ 486 (579)
..... +.++.+++.|+ .+.+||+++....+.+. +..++.|......++..++++|+++.+|||++...
T Consensus 239 s~~~~~~~i~~~k~~g~~v~~~~~ph~l~~~~~~~~~~~~~g~~~~~~pplr~~~~~~~l~~~l~~G~i~~igsDh~~~~ 318 (447)
T cd01314 239 SSKEAADEIARARKKGLPVYGETCPQYLLLDDSDYWKDWFEGAKYVCSPPLRPKEDQEALWDGLSSGTLQTVGSDHCPFN 318 (447)
T ss_pred CCHHHHHHHHHHHHCCCeEEEecCchhheeCHHHhccccccccceEECCCCCChHHHHHHHHHHhCCCeeEEECCCCCCC
Confidence 86443 35777777775 55799999775555441 11244444355667889999999999999986543
Q ss_pred C--CHH-----H---------HHHHH--HcccCCCCCCCCCCCCCCCHHHHHHHHcHHHHHhcccCCccccccCCCcccE
Q 008063 487 I--NPL-----C---------AIRTA--MKRIPPGWDNAWIPSERISLTDALIAHTLSAARACFLENDVGSLSPGKIADF 548 (579)
Q Consensus 487 ~--~~~-----~---------~~~~~--~~~~~~~~~~~~~~~~~ls~~~al~~~T~npA~~lgl~~~~G~I~~G~~ADl 548 (579)
. +.+ . +++.. +.+. .....++++++++++|.|||++||+.+++|+|++|+.|||
T Consensus 319 ~~~k~~~~~~~~~~~~G~~g~e~~l~~l~~~~--------~~~~~~~~~~~~~~~t~~pA~~~gl~~~~G~l~~G~~AD~ 390 (447)
T cd01314 319 FAQKARGKDDFTKIPNGVPGVETRMPLLWSEG--------VAKGRITLEKFVELTSTNPAKIFGLYPRKGTIAVGSDADL 390 (447)
T ss_pred HHHhhcccCCHhhCCCCCchHhhhHHHHHHHH--------HHcCCCCHHHHHHHHhhHHHHHhCCCCCCCccCCCCcCCE
Confidence 1 111 0 11111 1110 0234599999999999999999999777899999999999
Q ss_pred EEeCCCC-CC-------------Chhhcc-CCeEEEEEECCEEeC
Q 008063 549 VILSTSS-WE-------------DFAAEV-SASIEATYVSGVQAY 578 (579)
Q Consensus 549 vvld~~~-~~-------------~~~~~~-~~~v~~v~v~G~~v~ 578 (579)
||+|.+. +. ++.... ..+|..||++|++||
T Consensus 391 vi~d~~~~~~~~~~~~~~~~~~~~~~g~~~~g~v~~t~v~G~~v~ 435 (447)
T cd01314 391 VIWDPNAEKTISADTHHHNVDYNIFEGMKVKGWPVVTISRGKVVV 435 (447)
T ss_pred EEEeCCcCEEecHHHhhccCCCCcccCeEEeeeEEEEEECCEEEE
Confidence 9999763 21 122211 458999999999987
|
The hydrolysis of dihydropyrimidines is the second step of reductive catabolism of pyrimidines in human. The hydrolysis of 5-substituted hydantoins in microorganisms leads to enantiomerically pure N-carbamyl amino acids, which are used for the production of antibiotics, peptide hormones, pyrethroids, and pesticides. HYDs are classified depending on their stereoselectivity. This family also includes collapsin response regulators (CRMPs), cytosolic proteins involved in neuronal differentiation and axonal guidance which have strong homology to DHPases, but lack most of the active site residues. |
| >PRK13206 ureC urease subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.4e-30 Score=268.04 Aligned_cols=346 Identities=19% Similarity=0.197 Sum_probs=223.0
Q ss_pred CCccEEEEcCeEEeCCCCCCeeeEEEEECCEEEEecChHHHHh--------hccCCCeEEeCCCCeeecccccccccccc
Q 008063 43 LEADLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQ--------LAADGTNVLNLQGKVVVPGFIDSHVHFIP 114 (579)
Q Consensus 43 ~~~~~likn~~v~~~~~~~~~~~~v~I~~GkI~~Ig~~~~~~~--------~~~~~~~viD~~g~~V~PG~ID~H~H~~~ 114 (579)
...+++|+|++|+|+.+. ...+|.|+||||++|++...... ..+.+.++||++|++|+|||||+|+|+..
T Consensus 69 ~~~DlVI~Na~IiD~~gi--~~adI~IkDGrIvaIG~~~~p~~~~gv~~~~~ig~~tevIDaeG~iV~PG~ID~HVH~~~ 146 (573)
T PRK13206 69 GAPDTVITGAVILDHWGI--VKADVGIRDGRIVAIGKAGNPDIMDGVHPDLVIGPSTEIIAGNGRILTAGAIDCHVHFIC 146 (573)
T ss_pred CCCCEEEECeEEECCCCe--EEEEEEEECCEEEEEeCCCCccccccccccccCCCCCEEEECCCCEEEeCEEeeeeccCC
Confidence 457899999999987653 56799999999999997431100 00235689999999999999999999743
Q ss_pred cCccccccccCCCCCHHHHHHHHHHHHHcCCCCCeEEEeCCCCCCCCCCCCChHHhhhhCCCCeEEEEeCCCchhhhcHH
Q 008063 115 GGLQMARVKLRGVSHKDEFVRRVKEAVKNSKKGSWILGGGWNNDLWGGDLPMASWIDDITPHNPVWLSRMDGHMGLANSV 194 (579)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~p~~~~ld~~~~~~p~~~~~~~~~~~~~n~~ 194 (579)
++
T Consensus 147 Pg------------------------------------------------------------------------------ 148 (573)
T PRK13206 147 PQ------------------------------------------------------------------------------ 148 (573)
T ss_pred ch------------------------------------------------------------------------------
Confidence 21
Q ss_pred HHHHcCCCCCCCCCCCCeEEeCCCCCcCEEEhHhHHHHhcccCCCCCHHHHHHHHHHHHHHHHhcCccEEEeCCcCCCCC
Q 008063 195 ALQLVGITNLSEDPNGGTIMKTSSGEPTGLLIDAAMKLILPWIPEVSVDERREALLRASNLALSRGVTTVVDFGRYYPGE 274 (579)
Q Consensus 195 ~~~~~g~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Git~v~~~~~~~~~~ 274 (579)
..+.++..|+||+.+++.+....
T Consensus 149 ---------------------------------------------------------~~~aALagGVTTvi~~G~gP~~~ 171 (573)
T PRK13206 149 ---------------------------------------------------------IVDEALAAGITTLIGGGTGPAEG 171 (573)
T ss_pred ---------------------------------------------------------HHHHHHcCCeEEEEcCCCCcccc
Confidence 12568999999999975432111
Q ss_pred cccc-chHHHHHHHHHHhhcCCCeeEEEEccCccch--hhHHHHHHhcCCCCCCceEEceEEEEEcCccCCCcccccCCC
Q 008063 275 SVQL-SWEDFADVYQWASYSEKMKIRVCLFFPLETW--SSLADLINKTGHVLSDWVYLGGVKAFADGSLGSNSALFHEPY 351 (579)
Q Consensus 275 ~~~~-~~~~~~~~~~~~~~~~~~~i~v~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~k~~~dg~~~~~~~~~~~~~ 351 (579)
.... ..+......+.++......+++.++...... .+..+..+. ...|+|.. +.+
T Consensus 172 t~~~t~t~g~~~l~~~~~aa~~~pvn~g~~g~g~~~~~~~L~el~~a---------GA~GfKi~-------------~d~ 229 (573)
T PRK13206 172 SKATTVTPGAWHLARMLEALDGWPVNVALLGKGNTVSAEALWEQLRG---------GAGGFKLH-------------EDW 229 (573)
T ss_pred CcccccccchhHHHHHHHHhhcCceeEEEecCcCcCCHHHHHHHHHC---------CCcEEeec-------------Ccc
Confidence 1111 1111111111122223466777765543222 222222211 11233332 111
Q ss_pred CCCCCCCcccCCCHHHHHHHHHHHHHCCCeEEEEecchHHH---HHHHHHHHHHHHhcCCCCCCceEeeccCC---Chhh
Q 008063 352 ADEPHNYGLQVMELESLLSMTMASDKSGLQVAIHAIGDRAN---DLVLDMYKSVVVTTGKRDQRFRIEHAQHL---ASGT 425 (579)
Q Consensus 352 ~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~i~iH~~g~~~~---~~~~~~~~~~~~~~~~~~~~~~i~H~~~~---~~~~ 425 (579)
..+++.+.+.++.|+++|+++.+|+..-.+. +..+++ ..+...++.|.... +..+
T Consensus 230 ----------g~t~~~i~~aL~~A~~~gv~V~iHadtlne~g~~E~t~aa---------~~gr~iH~~H~egaggghapd 290 (573)
T PRK13206 230 ----------GSTPAAIDACLRVADAAGVQVALHSDTLNEAGFVEDTLAA---------IAGRSIHAYHTEGAGGGHAPD 290 (573)
T ss_pred ----------CCCHHHHHHHHHHHHHhCCEEEEECCCccccchhhHHHHH---------hcCCeEEEEeccCCCcCcccH
Confidence 1678999999999999999999999733211 111211 23456677777643 2334
Q ss_pred HHHHh-hCCcEEEecccccc------------------------cchhHHHHhhChhhhhhhhhhHHHHHHCCCeeeecC
Q 008063 426 AARFG-DQGIVASMQPQHLL------------------------DDADSARKKLGVDRAERESYLFQSLLANNALLALGS 480 (579)
Q Consensus 426 ~~~~~-~~~i~~~~~p~~~~------------------------~~~~~~~~~l~~~~~~~~~~~l~~l~~~Gi~v~~gs 480 (579)
+-++. ..++-.+.+..... ++....++++. . +....-..|++.|+.+++||
T Consensus 291 ~~~~~~~~n~lp~stnpt~p~~~nt~~e~~~m~m~~h~l~~~~~~d~~fa~srir---~-~ti~ae~~l~d~G~~~~~~S 366 (573)
T PRK13206 291 IITVASHPNVLPSSTNPTRPHTVNTLDEHLDMLMVCHHLNPAVPEDLAFAESRIR---P-STIAAEDVLHDMGAISMIGS 366 (573)
T ss_pred HHHhcCCCCCcCCCCCCCCCCcccchhhhhCeEEeeccCCCCCcchhhhhhhhcc---c-eeeccCchHhhCCcEEeccC
Confidence 44433 33433322211111 12222222222 2 44556678999999999999
Q ss_pred CCCC------CCCCHHHHHHHHHcccCCCCCCCCCCCCCCCHHHHHHHHcHHHHHhcccCCccccccCCCcccEEEeCCC
Q 008063 481 DWPV------ADINPLCAIRTAMKRIPPGWDNAWIPSERISLTDALIAHTLSAARACFLENDVGSLSPGKIADFVILSTS 554 (579)
Q Consensus 481 D~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~npA~~lgl~~~~G~I~~G~~ADlvvld~~ 554 (579)
|++. ...++|+.++.+..|.... ..+.....++.+++|+++|.|||+++|+++.+|+|++||.|||||||.+
T Consensus 367 Ds~~~~~~~e~~~~~~q~a~~~~~rr~~l--~g~~~~~~~~v~~al~~yT~nPA~alG~~~~~GsLe~Gk~ADlVvld~d 444 (573)
T PRK13206 367 DSQAMGRIGEVVLRTWQTAHVMKRRRGAL--PGDGRADNNRARRYVAKYTICPAVAHGIDHEIGSVEVGKLADLVLWEPA 444 (573)
T ss_pred CccccccccchhhhHHHHHHHHHhccCCC--CCCCcccchhHHHHHHHHHHHHHHHhCCCcCCcccCCCCcCCEEEECcc
Confidence 9997 4589999999998765421 1123467799999999999999999999988999999999999999988
Q ss_pred CCCChhhccCCeEEEEEECCEEeCC
Q 008063 555 SWEDFAAEVSASIEATYVSGVQAYP 579 (579)
Q Consensus 555 ~~~~~~~~~~~~v~~v~v~G~~v~~ 579 (579)
+|. .++..||++|+++|.
T Consensus 445 ~f~-------~~~~~ti~~G~iv~~ 462 (573)
T PRK13206 445 FFG-------VRPHAVLKGGAIAWA 462 (573)
T ss_pred ccC-------CCccEEEECCEEEEe
Confidence 764 267899999999873
|
|
| >PRK13207 ureC urease subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=5e-30 Score=268.46 Aligned_cols=346 Identities=20% Similarity=0.198 Sum_probs=220.2
Q ss_pred CCCccEEEEcCeEEeCCCCCCeeeEEEEECCEEEEecChHHHHh------hccCCCeEEeCCCCeeeccccccccccccc
Q 008063 42 NLEADLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQ------LAADGTNVLNLQGKVVVPGFIDSHVHFIPG 115 (579)
Q Consensus 42 ~~~~~~likn~~v~~~~~~~~~~~~v~I~~GkI~~Ig~~~~~~~------~~~~~~~viD~~g~~V~PG~ID~H~H~~~~ 115 (579)
...++++|+|++|+++.+ ....+|.|+||||++|++...... ..+.+.++||++|++|+|||||+|+|+..+
T Consensus 64 ~~~mDlVI~Na~Vvd~~g--i~~adI~I~dGrI~~IG~~~~p~~~~~v~~~~~~~~eVIDa~G~iV~PG~ID~HvH~~~P 141 (568)
T PRK13207 64 DGAVDTVITNALILDHWG--IVKADIGIKDGRIVAIGKAGNPDIQDGVDIIIGPGTEVIAGEGLIVTAGGIDTHIHFICP 141 (568)
T ss_pred cccCCEEEECeEEECCCC--eEEEEEEEECCEEEEEeCCCCccccccccccCCCCCeEEECCCCEEEeCeEECccCCccc
Confidence 346789999999999744 367899999999999997422110 012357899999999999999999997422
Q ss_pred CccccccccCCCCCHHHHHHHHHHHHHcCCCCCeEEEeCCCCCCCCCCCCChHHhhhhCCCCeEEEEeCCCchhhhcHHH
Q 008063 116 GLQMARVKLRGVSHKDEFVRRVKEAVKNSKKGSWILGGGWNNDLWGGDLPMASWIDDITPHNPVWLSRMDGHMGLANSVA 195 (579)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~p~~~~ld~~~~~~p~~~~~~~~~~~~~n~~~ 195 (579)
+
T Consensus 142 ~------------------------------------------------------------------------------- 142 (568)
T PRK13207 142 Q------------------------------------------------------------------------------- 142 (568)
T ss_pred c-------------------------------------------------------------------------------
Confidence 1
Q ss_pred HHHcCCCCCCCCCCCCeEEeCCCCCcCEEEhHhHHHHhcccCCCCCHHHHHHHHHHHHHHHHhcCccEEEeCCcCCC-CC
Q 008063 196 LQLVGITNLSEDPNGGTIMKTSSGEPTGLLIDAAMKLILPWIPEVSVDERREALLRASNLALSRGVTTVVDFGRYYP-GE 274 (579)
Q Consensus 196 ~~~~g~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Git~v~~~~~~~~-~~ 274 (579)
..+.++..|+||+.+++.+.. +.
T Consensus 143 --------------------------------------------------------~~~aALagGVTTVi~mg~gP~~gt 166 (568)
T PRK13207 143 --------------------------------------------------------QIEEALASGVTTMIGGGTGPATGT 166 (568)
T ss_pred --------------------------------------------------------HHHHHHcCCCCEEEcCCcCCccCC
Confidence 124578999999999754321 11
Q ss_pred ccccchHHHHHHHHHHhhcCCCeeEEEEccCcc--chhhHHHHHHhcCCCCCCceEEceEEEEEcCccCCCcccccCCCC
Q 008063 275 SVQLSWEDFADVYQWASYSEKMKIRVCLFFPLE--TWSSLADLINKTGHVLSDWVYLGGVKAFADGSLGSNSALFHEPYA 352 (579)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~k~~~dg~~~~~~~~~~~~~~ 352 (579)
.+....+......+.++.....++++.++.... ...+..+..+. ...++|++.| +
T Consensus 167 ~~~t~tpG~~~l~~~l~~a~~~pin~g~~g~g~~~~~~~L~e~i~a---------GA~gfKi~~d-------------~- 223 (568)
T PRK13207 167 NATTCTPGPWHIHRMLQAADAFPMNIGFLGKGNASLPEALEEQIEA---------GAIGLKLHED-------------W- 223 (568)
T ss_pred cccccccchHHHHHHHHHhhcCCceEEEEcCCCcccHHHHHHHHHc---------CCCEEeecCC-------------C-
Confidence 111111111111111222223445555443221 12222222111 1123443311 1
Q ss_pred CCCCCCcccCCCHHHHHHHHHHHHHCCCeEEEEecchHHH---HHHHHHHHHHHHhcCCCCCCceEeecc----CCChhh
Q 008063 353 DEPHNYGLQVMELESLLSMTMASDKSGLQVAIHAIGDRAN---DLVLDMYKSVVVTTGKRDQRFRIEHAQ----HLASGT 425 (579)
Q Consensus 353 ~~~~~~~~~~~~~~~l~~~~~~a~~~g~~i~iH~~g~~~~---~~~~~~~~~~~~~~~~~~~~~~i~H~~----~~~~~~ 425 (579)
..+++.+.++++.|+++|+++.+|+....+. +..+++ ..+...++.|.. -..++.
T Consensus 224 ---------g~t~~~l~~aL~~A~~~gv~V~iHa~tlne~G~~e~t~~a---------~~g~~iH~~H~egaggghapdi 285 (568)
T PRK13207 224 ---------GATPAAIDNCLSVADEYDVQVAIHTDTLNESGFVEDTIAA---------FKGRTIHTFHTEGAGGGHAPDI 285 (568)
T ss_pred ---------CCCHHHHHHHHHHHHHhCCEEEEeCCCcccchHHHHHHHh---------cCCCEEEEEeecCCCcCCchHH
Confidence 1468899999999999999999999632221 222222 223345566654 245777
Q ss_pred HHHHhhCCcEEEecccccccc------------------------hhHHHHhhChhhhhhhhhhHHHHHHCCCeeeecCC
Q 008063 426 AARFGDQGIVASMQPQHLLDD------------------------ADSARKKLGVDRAERESYLFQSLLANNALLALGSD 481 (579)
Q Consensus 426 ~~~~~~~~i~~~~~p~~~~~~------------------------~~~~~~~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD 481 (579)
++.+...++..+.+.....+. ....++++. . +....-..|++.|+.++++||
T Consensus 286 i~~~~~~~v~p~st~pt~p~~~~~~~e~~~m~m~~h~l~~~~~~d~~~a~srir---~-~t~~ae~~l~d~Ga~~~~~SD 361 (568)
T PRK13207 286 IKVAGEPNVLPSSTNPTRPYTVNTIDEHLDMLMVCHHLDPSIPEDVAFAESRIR---R-ETIAAEDILHDLGAISMISSD 361 (568)
T ss_pred HHHhhcCCCccCCCCCCCCCccCchhhhcCeEEeecCCCCCCcchhhhhhhhcc---c-eeecccchhhhCCCEEEecCC
Confidence 788888776554333222221 122222222 2 445556678999999999999
Q ss_pred CCCCC---CCHHHHHHHHHcccCCCCCC----CCCCCCCCCHHHHHHHHcHHHHHhcccCCccccccCCCcccEEEeCCC
Q 008063 482 WPVAD---INPLCAIRTAMKRIPPGWDN----AWIPSERISLTDALIAHTLSAARACFLENDVGSLSPGKIADFVILSTS 554 (579)
Q Consensus 482 ~~~~~---~~~~~~~~~~~~~~~~~~~~----~~~~~~~ls~~~al~~~T~npA~~lgl~~~~G~I~~G~~ADlvvld~~ 554 (579)
++... .+++..++.++.|....+.. .+..+..++.+ |+++|+|||+++|+++.+|+|++||.||||||+.+
T Consensus 362 ~p~~~~~~~~~~r~~q~A~~r~~~~G~~~~d~~~~~n~ri~~~--l~~~T~npA~alG~~~~vGsIe~Gk~ADlVvld~d 439 (568)
T PRK13207 362 SQAMGRVGEVIIRTWQTAHKMKVQRGPLPGDSGRNDNFRVKRY--IAKYTINPAIAHGISHEVGSVEVGKLADLVLWKPA 439 (568)
T ss_pred cccccccccchhHHHHHHHHHHHccCCCCcccccCccchHHHH--HHHHhHHHHHHcCCCcCccccCCCCcCCEEEECch
Confidence 99773 67888888888775432211 13344555665 99999999999999999999999999999999988
Q ss_pred CCCChhhccCCeEEEEEECCEEeC
Q 008063 555 SWEDFAAEVSASIEATYVSGVQAY 578 (579)
Q Consensus 555 ~~~~~~~~~~~~v~~v~v~G~~v~ 578 (579)
++. .++..||++|+++|
T Consensus 440 ~f~-------~~~~~ti~~G~iv~ 456 (568)
T PRK13207 440 FFG-------VKPELVLKGGMIAW 456 (568)
T ss_pred hcC-------CCceEEEECCEEEE
Confidence 865 25779999999987
|
|
| >PRK09357 pyrC dihydroorotase; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.9e-30 Score=268.74 Aligned_cols=211 Identities=19% Similarity=0.178 Sum_probs=140.3
Q ss_pred CCHHHHHHHHHHHHHCCCeEEEEecchHHHHH---------------------HHHHHHHHHHhcCCCCCCceEeeccCC
Q 008063 363 MELESLLSMTMASDKSGLQVAIHAIGDRANDL---------------------VLDMYKSVVVTTGKRDQRFRIEHAQHL 421 (579)
Q Consensus 363 ~~~~~l~~~~~~a~~~g~~i~iH~~g~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~i~H~~~~ 421 (579)
.+++.+++.++.+++.|+++++|+....-... ......+.....-..+.++++.|+...
T Consensus 156 ~~~~~l~~~~~~a~~~g~~v~iH~ee~~~~~~~~~~~g~~~~~~~~~~~p~~~E~~~i~~~~~la~~~g~~~hi~H~s~~ 235 (423)
T PRK09357 156 QDARLMRRALEYAKALDLLIAQHCEDPSLTEGGVMNEGEVSARLGLPGIPAVAEEVMIARDVLLAEATGARVHICHVSTA 235 (423)
T ss_pred CCHHHHHHHHHHHHhcCCEEEEeCCCHHHhhcccccCChhhHHhCCCCCCHHHHHHHHHHHHHHHHHHCCcEEEEeCCCH
Confidence 57789999999999999999999974321110 000111111111112468899999886
Q ss_pred ChhhHHHH-hhC--CcEEEecccccccchhHHH------HhhChhhhhhhhhhHHHHHHCCCeeeecCCCCCCCCCH---
Q 008063 422 ASGTAARF-GDQ--GIVASMQPQHLLDDADSAR------KKLGVDRAERESYLFQSLLANNALLALGSDWPVADINP--- 489 (579)
Q Consensus 422 ~~~~~~~~-~~~--~i~~~~~p~~~~~~~~~~~------~~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD~~~~~~~~--- 489 (579)
...++.+. ++. ++++.+||++...+.+.+. +..++.|..+...++..++++|+.+++|||++....+.
T Consensus 236 ~~~~~i~~a~~~g~~v~~e~~ph~L~~~~~~~~~~~~~~k~~Pplr~~~~~~~l~~~l~~G~~~~i~sDh~p~~~~~k~~ 315 (423)
T PRK09357 236 GSVELIRWAKALGIKVTAEVTPHHLLLTDEDLLTYDPNYKVNPPLRTEEDREALIEGLKDGTIDAIATDHAPHAREEKEC 315 (423)
T ss_pred HHHHHHHHHHHcCCCEEEEechHHheEcHHHHhCcCCceEECCCCCCHHHHHHHHHHHHcCCCeEEecCCCCCChHHccC
Confidence 65444443 333 4777899999876555432 23566776567889999999999999999986543220
Q ss_pred -H-------HHHHHHHcccCCCCCCCCCCCCCCCHHHHHHHHcHHHHHhcccCCccccccCCCcccEEEeCCCCC-C-Ch
Q 008063 490 -L-------CAIRTAMKRIPPGWDNAWIPSERISLTDALIAHTLSAARACFLENDVGSLSPGKIADFVILSTSSW-E-DF 559 (579)
Q Consensus 490 -~-------~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~npA~~lgl~~~~G~I~~G~~ADlvvld~~~~-~-~~ 559 (579)
+ ..+...+..... .+..+.+++++++++++|.|||+.+|+++ |+|++|+.|||+|+|.+.. . +.
T Consensus 316 ~~~~~~~G~~g~e~~~~~~~~----~~~~~~~~~~~~~~~~~t~~~A~~~g~~~--G~i~~G~~AD~~i~d~~~~~~v~~ 389 (423)
T PRK09357 316 EFEAAPFGITGLETALSLLYT----TLVKTGLLDLEQLLEKMTINPARILGLPA--GPLAEGEPADLVIFDPEAEWTVDG 389 (423)
T ss_pred CHhhCCCCceEHHHHHHHHHH----HHHHcCCCCHHHHHHHHhHHHHHHhCCCC--CccCCCCcCCEEEEcCCCCEEEch
Confidence 1 011111111000 01134469999999999999999999975 9999999999999997743 2 22
Q ss_pred hhcc-------------CCeEEEEEECCEEeCC
Q 008063 560 AAEV-------------SASIEATYVSGVQAYP 579 (579)
Q Consensus 560 ~~~~-------------~~~v~~v~v~G~~v~~ 579 (579)
..+. ..+|..||++|++||.
T Consensus 390 ~~~~~~~~~~p~~g~~~~g~v~~t~v~G~~v~~ 422 (423)
T PRK09357 390 EDFASKGKNTPFIGMKLKGKVVYTIVDGKIVYQ 422 (423)
T ss_pred hhcccCCCCCCCcCCEEeeEEEEEEECCEEEec
Confidence 2211 5589999999999974
|
|
| >KOG3968 consensus Atrazine chlorohydrolase/guanine deaminase [Nucleotide transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.1e-31 Score=255.97 Aligned_cols=200 Identities=21% Similarity=0.239 Sum_probs=156.4
Q ss_pred CCHHHHHHHHHHHHHCCCeEEEEecch-HHHHHHHHHHHH------HHHhcCCCCCCceEeeccCCChhhHHHHhhCCcE
Q 008063 363 MELESLLSMTMASDKSGLQVAIHAIGD-RANDLVLDMYKS------VVVTTGKRDQRFRIEHAQHLASGTAARFGDQGIV 435 (579)
Q Consensus 363 ~~~~~l~~~~~~a~~~g~~i~iH~~g~-~~~~~~~~~~~~------~~~~~~~~~~~~~i~H~~~~~~~~~~~~~~~~i~ 435 (579)
++.+.+.++.+.|+.+++++++|.... .++....+.+.+ +...++..+....++|+.++++++++.++++|..
T Consensus 217 c~k~v~~~l~~lak~~~l~~q~hIsen~~EI~~~~~ff~~~~~y~~~yd~~~lL~~ktvlaH~~hl~d~ei~~l~k~g~s 296 (439)
T KOG3968|consen 217 CSKGVFEELSKLAKYHNLHIQIHISENGKEIEAVKNFFPEKLSYTDVYDKGGLLTEKTVLAHLEHLSDEEIELLAKRGCS 296 (439)
T ss_pred CcchhHHHHHHHHHhhhhhhhhhhhhcHHHHHHHHHhhhhcccchHHHHHhcccchHhHhhhheecCchhHHHHHhcCCc
Confidence 567788888899999999999998755 455555555444 4455667777899999999999999999999999
Q ss_pred EEecccccccchhHHHHhhChhhhhhhhhhHHHHHHCCCeeeecCCCCCCCCCHHHHHHHHHcccCCCCCCCCCCCCCCC
Q 008063 436 ASMQPQHLLDDADSARKKLGVDRAERESYLFQSLLANNALLALGSDWPVADINPLCAIRTAMKRIPPGWDNAWIPSERIS 515 (579)
Q Consensus 436 ~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls 515 (579)
+++||.++. .|+ ...++++.+++.|+.+++|||.+. .+...++++++..... ..... ...+|+
T Consensus 297 vshCP~Sn~--------~L~-----sG~~~vr~lL~~~v~VgLGtDv~~--~s~l~a~r~A~~~s~h-L~~~~-~~~~Ls 359 (439)
T KOG3968|consen 297 VSHCPTSNS--------ILG-----SGIPRVRELLDIGVIVGLGTDVSG--CSILNALRQAMPMSMH-LACVL-DVMKLS 359 (439)
T ss_pred eEECCcchh--------hhc-----cCCccHHHHHhcCceEeecCCccc--cccHHHHHHHHHHHHH-HHhcc-CcccCC
Confidence 999999986 555 556689999999999999999753 4445555555432110 00011 446799
Q ss_pred HHHHHHHHcHHHHHhcccCCccccccCCCcccEEEeCCCCCC-Chhhcc--------------CCeEEEEEECCEEeCC
Q 008063 516 LTDALIAHTLSAARACFLENDVGSLSPGKIADFVILSTSSWE-DFAAEV--------------SASIEATYVSGVQAYP 579 (579)
Q Consensus 516 ~~~al~~~T~npA~~lgl~~~~G~I~~G~~ADlvvld~~~~~-~~~~~~--------------~~~v~~v~v~G~~v~~ 579 (579)
++|+|.+||.|+|++||+++..|++|+||.+|++++|.+.++ .+..+. +.++..|||+|+.|++
T Consensus 360 ~~e~L~lATi~GA~aLg~d~~~Gs~eVGK~fDai~id~s~~~~~l~~~~~~~~lI~~~v~~g~drni~~V~V~Gk~v~~ 438 (439)
T KOG3968|consen 360 MEEALYLATIGGAKALGRDDTHGSLEVGKYFDAIIIDLSAPESPLYRFSGHHDLISKVVYNGDDRNIAEVFVAGKLVKQ 438 (439)
T ss_pred HHHHHHHHhccchhhccCCCcccceecccccceEEEeCCCCcchhhhccchHHHHHHHHhcCCCCceEEEEEccEEecc
Confidence 999999999999999999999999999999999999988764 221111 4599999999999863
|
|
| >PRK08323 phenylhydantoinase; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.2e-29 Score=267.08 Aligned_cols=210 Identities=16% Similarity=0.098 Sum_probs=139.5
Q ss_pred CCHHHHHHHHHHHHHCCCeEEEEecchHHHHHHHH------------------------HHHHHHHhcCCCCCCceEeec
Q 008063 363 MELESLLSMTMASDKSGLQVAIHAIGDRANDLVLD------------------------MYKSVVVTTGKRDQRFRIEHA 418 (579)
Q Consensus 363 ~~~~~l~~~~~~a~~~g~~i~iH~~g~~~~~~~~~------------------------~~~~~~~~~~~~~~~~~i~H~ 418 (579)
.+.+.+.++++.++++|.++.+|+.....++...+ ..++........+.+.++.|+
T Consensus 157 ~s~~~l~~~~~~a~~~g~~v~~H~e~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~e~~~v~~~~~~a~~~~~~~~i~H~ 236 (459)
T PRK08323 157 LDDDELLRALQRAAELGALPMVHAENGDAIAYLQAKLLAEGKTGPEYHALSRPPEVEGEATNRAIMLAELAGAPLYIVHV 236 (459)
T ss_pred CCHHHHHHHHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcCCCChhhhhccCCHHHHHHHHHHHHHHHHHhCCCEEEEeC
Confidence 68899999999999999999999864443332221 111222222334568889998
Q ss_pred cCC-ChhhHHHHhhCCc--EEEecccccccchhHHHH----------hhChhhhhhhhhhHHHHHHCCCeeeecCCCCCC
Q 008063 419 QHL-ASGTAARFGDQGI--VASMQPQHLLDDADSARK----------KLGVDRAERESYLFQSLLANNALLALGSDWPVA 485 (579)
Q Consensus 419 ~~~-~~~~~~~~~~~~i--~~~~~p~~~~~~~~~~~~----------~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD~~~~ 485 (579)
... +.+.++.+++.|+ ++.+||.+...+.+.... ..+|.|.+....++..++++|+.++++||+...
T Consensus 237 s~~~~~~~i~~ak~~g~~vt~e~~p~~l~l~~~~~~~~~~~~g~~~k~~pPlr~~~~~~~l~~~l~~G~i~~i~sDh~p~ 316 (459)
T PRK08323 237 SCKEALEAIRRARARGQRVFGETCPQYLLLDESEYDGPDWFEGAKYVMSPPLRDKEHQDALWRGLQDGDLQVVATDHCPF 316 (459)
T ss_pred CCHHHHHHHHHHHHCCCeEEEEcCccceeecHHHhcCCccccccceEECCCCCChHHHHHHHHHhhcCCeeEEECCCCCC
Confidence 764 3356667777774 467999976644443321 124444445566788999999999999998654
Q ss_pred CCC--H------H---------HHHHHHHcccCCCCCCCCCCCCCCCHHHHHHHHcHHHHHhcccCCccccccCCCcccE
Q 008063 486 DIN--P------L---------CAIRTAMKRIPPGWDNAWIPSERISLTDALIAHTLSAARACFLENDVGSLSPGKIADF 548 (579)
Q Consensus 486 ~~~--~------~---------~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~npA~~lgl~~~~G~I~~G~~ADl 548 (579)
..+ . + .++...+.-. .......++++++++++|.|||++||+.+.+|+|++|+.|||
T Consensus 317 ~~~~~~~~~~~~~~~~p~G~~~~e~~~~~l~~------~~~~~~~~~~~~~~~~~t~~pA~~lgl~~~~G~l~~G~~ADl 390 (459)
T PRK08323 317 CFEQKKQLGRGDFTKIPNGTPGVEDRMPLLFS------EGVMTGRITLNRFVELTSTNPAKIFGLYPRKGTIAVGADADI 390 (459)
T ss_pred ChHHhcccccCCHhhCCCCcchHhhhHHHHHH------HHHHcCCCCHHHHHHHHhhHHHHHhCCCCCCcccCCCCcCCE
Confidence 311 1 1 1111110000 001234599999999999999999999666899999999999
Q ss_pred EEeCCCC-C-------------CChhhcc-CCeEEEEEECCEEeC
Q 008063 549 VILSTSS-W-------------EDFAAEV-SASIEATYVSGVQAY 578 (579)
Q Consensus 549 vvld~~~-~-------------~~~~~~~-~~~v~~v~v~G~~v~ 578 (579)
||+|.+. + ++..... ..+|..||++|++||
T Consensus 391 vi~d~~~~~~v~~~~~~s~~~~s~~~g~~~~g~v~~viv~G~~v~ 435 (459)
T PRK08323 391 VIWDPNATKTISASTLHSNVDYNPYEGFEVTGWPVTTLSRGEVVV 435 (459)
T ss_pred EEEcCCcccccCHHHHhhcCCCCcccCcEEeeeEEEEEECCEEEE
Confidence 9999762 1 1111111 458999999999986
|
|
| >cd01299 Met_dep_hydrolase_A Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.9e-29 Score=259.66 Aligned_cols=195 Identities=21% Similarity=0.203 Sum_probs=145.7
Q ss_pred ceEEEEEcCccCCCcccccCCCCCCCCCCcccCCCHHHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhcCCC
Q 008063 330 GGVKAFADGSLGSNSALFHEPYADEPHNYGLQVMELESLLSMTMASDKSGLQVAIHAIGDRANDLVLDMYKSVVVTTGKR 409 (579)
Q Consensus 330 ~g~k~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~i~iH~~g~~~~~~~~~~~~~~~~~~~~~ 409 (579)
..+|++.+|....... ..+...++++.++++++.|++.|+++.+|+.++..++..++. |
T Consensus 135 ~~iK~~~~g~~~~~~~-----------~~~~~~~~~e~l~~~~~~A~~~g~~v~~H~~~~~~i~~~l~~--------G-- 193 (342)
T cd01299 135 DQIKIMATGGVLSPGD-----------PPPDTQFSEEELRAIVDEAHKAGLYVAAHAYGAEAIRRAIRA--------G-- 193 (342)
T ss_pred CEEEEeccCCcCCCCC-----------CCcccCcCHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHc--------C--
Confidence 4578888765322110 012334789999999999999999999999987666655532 2
Q ss_pred CCCceEeeccCCChhhHHHHhhCCcEEEecccccccc---------hhHHHHhhChhhhhhhhhhHHHHHHCCCeeeecC
Q 008063 410 DQRFRIEHAQHLASGTAARFGDQGIVASMQPQHLLDD---------ADSARKKLGVDRAERESYLFQSLLANNALLALGS 480 (579)
Q Consensus 410 ~~~~~i~H~~~~~~~~~~~~~~~~i~~~~~p~~~~~~---------~~~~~~~l~~~~~~~~~~~l~~l~~~Gi~v~~gs 480 (579)
...++|+..+++++++++++.|+.++.||.++... .++........+. ....+++.++++|+++++||
T Consensus 194 --~~~i~H~~~~~~~~~~~l~~~g~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~Gv~v~~GT 270 (342)
T cd01299 194 --VDTIEHGFLIDDETIELMKEKGIFLVPTLATYEALAAEGAAPGLPADSAEKVALVLE-AGRDALRRAHKAGVKIAFGT 270 (342)
T ss_pred --CCEEeecCCCCHHHHHHHHHCCcEEeCcHHHHHHHHhhccccCCCHHHHHHHHHHHH-HHHHHHHHHHHcCCeEEEec
Confidence 45899999999999999999999999998865321 1111111111122 55678999999999999999
Q ss_pred CCCCC---CCCHHHHHHHHHcccCCCCCCCCCCCCCCCHHHHHHHHcHHHHHhcccCCccccccCCCcccEEEeCCCCCC
Q 008063 481 DWPVA---DINPLCAIRTAMKRIPPGWDNAWIPSERISLTDALIAHTLSAARACFLENDVGSLSPGKIADFVILSTSSWE 557 (579)
Q Consensus 481 D~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~npA~~lgl~~~~G~I~~G~~ADlvvld~~~~~ 557 (579)
|.+.. ..+.+.++..+. +.+++++++|+++|.|||+++|+++.+|+|++||.|||||+|.||++
T Consensus 271 D~~~~~~~~~~~~~e~~~~~-------------~~~~~~~~al~~~T~~~a~~~g~~~~~G~i~~G~~ADlvvl~~~pl~ 337 (342)
T cd01299 271 DAGFPVPPHGWNARELELLV-------------KAGGTPAEALRAATANAAELLGLSDELGVIEAGKLADLLVVDGDPLE 337 (342)
T ss_pred CCCCCCCchhHHHHHHHHHH-------------HhCCCHHHHHHHHHHHHHHHhCccCCcceECCCCcCCEEEECCChhh
Confidence 98741 134455554433 23589999999999999999999888999999999999999999998
Q ss_pred Chhh
Q 008063 558 DFAA 561 (579)
Q Consensus 558 ~~~~ 561 (579)
++.+
T Consensus 338 di~~ 341 (342)
T cd01299 338 DIAV 341 (342)
T ss_pred hhhh
Confidence 7654
|
The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown. |
| >PRK06189 allantoinase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-28 Score=260.58 Aligned_cols=364 Identities=19% Similarity=0.236 Sum_probs=223.9
Q ss_pred CccEEEEcCeEEeCCCCCCeeeEEEEECCEEEEecChHHHHhhccCCCeEEeCCCCeeecccccccccccccCccccccc
Q 008063 44 EADLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHFIPGGLQMARVK 123 (579)
Q Consensus 44 ~~~~likn~~v~~~~~~~~~~~~v~I~~GkI~~Ig~~~~~~~~~~~~~~viD~~g~~V~PG~ID~H~H~~~~~~~~~~~~ 123 (579)
+++++|+|++|+++++. ..++|+|+||||++|++..+ .++.++||++|++|+|||||+|+|+..++.
T Consensus 2 ~~~~~i~~~~v~~~~~~--~~~~v~i~~G~I~~i~~~~~-----~~~~~~iD~~g~~vlPG~ID~H~H~~~~~~------ 68 (451)
T PRK06189 2 MYDLIIRGGKVVTPEGV--YRADIGIKNGKIAEIAPEIS-----SPAREIIDADGLYVFPGMIDVHVHFNEPGR------ 68 (451)
T ss_pred CccEEEECCEEEcCCCc--EEEEEEEECCEEEEecCCCC-----CCCCeEEECCCCEEecCEEEeeeccCCCCC------
Confidence 35789999999987653 56899999999999986432 245689999999999999999999754211
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCCCCeEEEeCCCCCCCCCCCCChHHhhhhCCCCeEEEEeCCCchhhhcHHHHHHcCCCC
Q 008063 124 LRGVSHKDEFVRRVKEAVKNSKKGSWILGGGWNNDLWGGDLPMASWIDDITPHNPVWLSRMDGHMGLANSVALQLVGITN 203 (579)
Q Consensus 124 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~p~~~~ld~~~~~~p~~~~~~~~~~~~~n~~~~~~~g~~~ 203 (579)
T Consensus 69 -------------------------------------------------------------------------------- 68 (451)
T PRK06189 69 -------------------------------------------------------------------------------- 68 (451)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCeEEeCCCCCcCEEEhHhHHHHhcccCCCCCHHHHHHHHHHHHHHHHhcCccEEEeCCcCCCCCccccchHHH
Q 008063 204 LSEDPNGGTIMKTSSGEPTGLLIDAAMKLILPWIPEVSVDERREALLRASNLALSRGVTTVVDFGRYYPGESVQLSWEDF 283 (579)
Q Consensus 204 ~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Git~v~~~~~~~~~~~~~~~~~~~ 283 (579)
...+.+....+.+.+.|+|++.++... ...+....+.+
T Consensus 69 ----------------------------------------~~~~~~~~~~~aa~~gGvTt~~~~p~~--t~p~~~~~~~~ 106 (451)
T PRK06189 69 ----------------------------------------THWEGFATGSAALAAGGCTTYFDMPLN--SIPPTVTREAL 106 (451)
T ss_pred ----------------------------------------CCcccHHHHHHHHHhCCEEEEEECCCC--CCCCCCcHHHH
Confidence 001133445677899999999998411 11222233333
Q ss_pred HHHHHHHhhcCCCeeEEEEc--cCccchhhHHHHHHhcCCCCCCceEEceEEEEEcCccCCCcccccCCCCCCCCCCccc
Q 008063 284 ADVYQWASYSEKMKIRVCLF--FPLETWSSLADLINKTGHVLSDWVYLGGVKAFADGSLGSNSALFHEPYADEPHNYGLQ 361 (579)
Q Consensus 284 ~~~~~~~~~~~~~~i~v~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~g~k~~~dg~~~~~~~~~~~~~~~~~~~~~~~ 361 (579)
....+.++. ...+++.++ ....+.++..++... ...++|++.+.. +. .+..
T Consensus 107 ~~~~~~~~~--~~~~d~~~~~~~~~~~~~~l~~l~~~---------Gv~~~k~f~~~~----------~~------~~~~ 159 (451)
T PRK06189 107 DAKAELARQ--KSAVDFALWGGLVPGNLEHLRELAEA---------GVIGFKAFMSNS----------GT------DEFR 159 (451)
T ss_pred HHHHHHhCc--CceEeEEEEecccccCHHHHHHHHHc---------CCcEEEEEcccc----------CC------CCcC
Confidence 333333322 223444432 222223333222211 122445543210 00 0112
Q ss_pred CCCHHHHHHHHHHHHHCCCeEEEEecchHHHHHH------------------------HHHHHHHHHhcCCCCCCceEee
Q 008063 362 VMELESLLSMTMASDKSGLQVAIHAIGDRANDLV------------------------LDMYKSVVVTTGKRDQRFRIEH 417 (579)
Q Consensus 362 ~~~~~~l~~~~~~a~~~g~~i~iH~~g~~~~~~~------------------------~~~~~~~~~~~~~~~~~~~i~H 417 (579)
..+...+.+.++.+++.+..+.+|+..+.-.+.. .....+.....-..+.+.++.|
T Consensus 160 ~~~~~~l~~~~~~~~~~~~~~~~H~e~~~~~~~~~~~~~~~g~~~~~~~~~~~P~~~E~~~v~~~l~la~~~g~~~hi~H 239 (451)
T PRK06189 160 SSDDLTLYEGMKEIAALGKILALHAESDALTRHLTTQARQQGKTDVRDYLESRPVVAELEAVQRALLYAQETGCPLHFVH 239 (451)
T ss_pred cCCHHHHHHHHHHHHhcCCeEEEECCChHHHHHHHHHHHhcCCCChhHccccCCHHHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 2567788999999999999999999643211110 0011111111111245778888
Q ss_pred ccCCCh-hhHHHHhhCC--cEEEecccccccchhHHHH------hhChhhhhhhhhhHHHHHHCCCeeeecCCCCCCCCC
Q 008063 418 AQHLAS-GTAARFGDQG--IVASMQPQHLLDDADSARK------KLGVDRAERESYLFQSLLANNALLALGSDWPVADIN 488 (579)
Q Consensus 418 ~~~~~~-~~~~~~~~~~--i~~~~~p~~~~~~~~~~~~------~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD~~~~~~~ 488 (579)
...... +.+..+++.| +++.+||++...+.+.+.. ..++.|......++..++++|++++++||+......
T Consensus 240 iSt~~~~~~i~~~k~~g~~vt~ev~ph~L~l~~~~~~~~~~~~~~~Pplr~~~~~~~L~~~l~~G~i~~i~sDh~p~~~~ 319 (451)
T PRK06189 240 ISSGKAVALIAEAKKRGVDVSVETCPHYLLFTEEDFERIGAVAKCAPPLRSRSQKEELWRGLLAGEIDMISSDHSPCPPE 319 (451)
T ss_pred CCCHHHHHHHHHHHHCCCcEEEEeCHHHhhcCHhHhhCcCCceEEeCCCCChhhHHHHHHHHhCCCceEEECCCCCCCHH
Confidence 875332 3444445554 7888999998766555432 345566556677889999999999999997544221
Q ss_pred ------HH----------HHHHHHHcccCCCCCCCCCCCCCCCHHHHHHHHcHHHHHhcccCCccccccCCCcccEEEeC
Q 008063 489 ------PL----------CAIRTAMKRIPPGWDNAWIPSERISLTDALIAHTLSAARACFLENDVGSLSPGKIADFVILS 552 (579)
Q Consensus 489 ------~~----------~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~npA~~lgl~~~~G~I~~G~~ADlvvld 552 (579)
.+ ..+...+... ..+.+++++++++++|.|||+.||++ .+|+|++|+.|||+|+|
T Consensus 320 ~K~~~~~~~~~~G~~g~e~~l~~~~~~~--------~~~~~l~~~~~~~~~t~npA~~lgl~-~~G~l~~G~~ADlvi~d 390 (451)
T PRK06189 320 LKEGDDFFLVWGGISGGQSTLLVMLTEG--------YIERGIPLETIARLLATNPAKRFGLP-QKGRLEVGADADFVLVD 390 (451)
T ss_pred HcCcCCcccCCCCceeHHHHHHHHHHHH--------HhcCCCCHHHHHHHHhhhHHHHhCCC-CCCcccCCCcCCEEEEc
Confidence 11 0111111100 13446999999999999999999995 47999999999999999
Q ss_pred CC-CCC-------------Chhhc-cCCeEEEEEECCEEeC
Q 008063 553 TS-SWE-------------DFAAE-VSASIEATYVSGVQAY 578 (579)
Q Consensus 553 ~~-~~~-------------~~~~~-~~~~v~~v~v~G~~v~ 578 (579)
.+ ++. ++... ...+|..|+++|++||
T Consensus 391 ~~~~~~~~~~~~~~~~~~~p~~g~~~~g~v~~tiv~G~~v~ 431 (451)
T PRK06189 391 LDETYTLTKEDLFYRHKQSPYEGRTFPGRVVATYLRGQCVY 431 (451)
T ss_pred CCCCEEECHHHhhhcCCCCCcCCcEEEeEEEEEEECCEEEE
Confidence 86 332 11111 1457999999999987
|
|
| >PRK12394 putative metallo-dependent hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.4e-29 Score=258.08 Aligned_cols=181 Identities=18% Similarity=0.202 Sum_probs=125.7
Q ss_pred CCHHHHHHHHHHHHHCCCeEEEEecchH-HHHHHHHHHHHHHHhcCCCCCCceEeeccCCC-----------hhhHHHHh
Q 008063 363 MELESLLSMTMASDKSGLQVAIHAIGDR-ANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLA-----------SGTAARFG 430 (579)
Q Consensus 363 ~~~~~l~~~~~~a~~~g~~i~iH~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~i~H~~~~~-----------~~~~~~~~ 430 (579)
.+++.+++.++.|++.|+++++|+.... ...+.++ .......+.||.... .+++.+++
T Consensus 170 ~~~~~l~~~~~~A~~~g~~v~iH~~e~~~~~~~~~~----------~l~~g~~~~H~~~~~~~~~~~~~~~~~~~~~~~~ 239 (379)
T PRK12394 170 YGLKPLTETLRIANDLRCPVAVHSTHPVLPMKELVS----------LLRRGDIIAHAFHGKGSTILTEEGAVLAEVRQAR 239 (379)
T ss_pred cchHHHHHHHHHHHHcCCCEEEEeCCCCccHHHHHH----------hcCCCCEEEecCCCCCCCcCCCCCCChHHHHHHH
Confidence 5688999999999999999999996432 2111111 122344688887622 34667788
Q ss_pred hCCcEE-EecccccccchhHHHHhhChhhhhhhhhhHHHHHHCCC-eeeecCCCCCCC--CCHHHHHHHHHcccCCCCCC
Q 008063 431 DQGIVA-SMQPQHLLDDADSARKKLGVDRAERESYLFQSLLANNA-LLALGSDWPVAD--INPLCAIRTAMKRIPPGWDN 506 (579)
Q Consensus 431 ~~~i~~-~~~p~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~~Gi-~v~~gsD~~~~~--~~~~~~~~~~~~~~~~~~~~ 506 (579)
+.|+.+ ..++.++. +...+..++++|+ ++++|||...+. .+++..|...+.+.
T Consensus 240 ~~G~~~~~~~g~s~~-----------------~~~~~~~~l~~G~~~~~lgTD~~~~~~~~~~~~~l~~~~~~~------ 296 (379)
T PRK12394 240 ERGVIFDAANGRSHF-----------------DMNVARRAIANGFLPDIISSDLSTITKLAWPVYSLPWVLSKY------ 296 (379)
T ss_pred hCCeEEEecCCcccc-----------------chHHHHHHHHCCCCceEEECCCCCCCcccCccchHHHHHHHH------
Confidence 889876 44544321 1123468889995 899999987653 23334444444322
Q ss_pred CCCCCCCCCHHHHHHHHcHHHHHhcccCCccccccCCCcccEEEeCCCCCC-Chhhcc--------CCeEEEEEECCEEe
Q 008063 507 AWIPSERISLTDALIAHTLSAARACFLENDVGSLSPGKIADFVILSTSSWE-DFAAEV--------SASIEATYVSGVQA 577 (579)
Q Consensus 507 ~~~~~~~ls~~~al~~~T~npA~~lgl~~~~G~I~~G~~ADlvvld~~~~~-~~~~~~--------~~~v~~v~v~G~~v 577 (579)
.+.+++++++++++|.|||+.+|+++.+|+|++|+.|||+++|.+... ...+.. ...|..||++|++|
T Consensus 297 ---~~~~~~~~~~~~~at~~~a~~~g~~~~~G~i~~G~~ADl~~~~~~~~~~~~~d~~g~~~~~~~~~~v~~t~v~G~~v 373 (379)
T PRK12394 297 ---LALGMALEDVINACTHTPAVLMGMAAEIGTLAPGAFADIAIFKLKNRHVEFADIHGETLTGTHVLVPQMTIKSGEIL 373 (379)
T ss_pred ---HHcCCCHHHHHHHHHHHHHHHhCCCCCCCccCCCCccCEEEEecCcCcceeccCCCCEEEeeeecceEEEEECCEEE
Confidence 135699999999999999999999755899999999999999977533 222221 23789999999998
Q ss_pred CC
Q 008063 578 YP 579 (579)
Q Consensus 578 ~~ 579 (579)
|.
T Consensus 374 ~~ 375 (379)
T PRK12394 374 YR 375 (379)
T ss_pred Ee
Confidence 73
|
|
| >PRK13985 ureB urease subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.7e-29 Score=256.35 Aligned_cols=349 Identities=20% Similarity=0.200 Sum_probs=217.0
Q ss_pred CCccEEEEcCeEEeCCCCCCeeeEEEEECCEEEEecChHHHHh--------hccCCCeEEeCCCCeeecccccccccccc
Q 008063 43 LEADLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQ--------LAADGTNVLNLQGKVVVPGFIDSHVHFIP 114 (579)
Q Consensus 43 ~~~~~likn~~v~~~~~~~~~~~~v~I~~GkI~~Ig~~~~~~~--------~~~~~~~viD~~g~~V~PG~ID~H~H~~~ 114 (579)
...+++|+|++|++..+ ...++|.|+||||++|++...... ..+.+.++||++|++|+|||||+|+|+..
T Consensus 63 ~~~DlVI~Na~IiD~~g--i~kaDI~IkdGrIaaIG~~gn~~~~~~v~~~~~ig~~tevIDa~G~iV~PG~ID~HvH~~~ 140 (568)
T PRK13985 63 EELDLIITNALIIDYTG--IYKADIGIKDGKIAGIGKGGNKDMQDGVKNNLSVGPATEALAGEGLIVTAGGIDTHIHFIS 140 (568)
T ss_pred CcCCEEEECeEEECCCC--cEEEEEEEECCEEEEeecCCCccccccccccccCCCCceEEECCCCEEEeCEEEeeCCCCC
Confidence 36789999999999655 356799999999999997532110 01246789999999999999999999732
Q ss_pred cCccccccccCCCCCHHHHHHHHHHHHHcCCCCCeEEEeCCCCCCCCCCCCChHHhhhhCCCCeEEEEeCCCchhhhcHH
Q 008063 115 GGLQMARVKLRGVSHKDEFVRRVKEAVKNSKKGSWILGGGWNNDLWGGDLPMASWIDDITPHNPVWLSRMDGHMGLANSV 194 (579)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~p~~~~ld~~~~~~p~~~~~~~~~~~~~n~~ 194 (579)
++
T Consensus 141 P~------------------------------------------------------------------------------ 142 (568)
T PRK13985 141 PQ------------------------------------------------------------------------------ 142 (568)
T ss_pred cc------------------------------------------------------------------------------
Confidence 21
Q ss_pred HHHHcCCCCCCCCCCCCeEEeCCCCCcCEEEhHhHHHHhcccCCCCCHHHHHHHHHHHHHHHHhcCccEEEeCCcCC-CC
Q 008063 195 ALQLVGITNLSEDPNGGTIMKTSSGEPTGLLIDAAMKLILPWIPEVSVDERREALLRASNLALSRGVTTVVDFGRYY-PG 273 (579)
Q Consensus 195 ~~~~~g~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Git~v~~~~~~~-~~ 273 (579)
..+.+++.|+||+.+++.+. ++
T Consensus 143 ---------------------------------------------------------~~~~AlagGVTTvI~~G~gP~~~ 165 (568)
T PRK13985 143 ---------------------------------------------------------QIPTAFASGVTTMIGGGTGPADG 165 (568)
T ss_pred ---------------------------------------------------------HHHHHhcCceEEEEccCcCCCCC
Confidence 11348999999999865432 12
Q ss_pred CccccchHHHHHHHHHHhhcCCCeeEEEEccCcc--chhhHHHHHHhcCCCCCCceEEceEEEEEcCccCCCcccccCCC
Q 008063 274 ESVQLSWEDFADVYQWASYSEKMKIRVCLFFPLE--TWSSLADLINKTGHVLSDWVYLGGVKAFADGSLGSNSALFHEPY 351 (579)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~k~~~dg~~~~~~~~~~~~~ 351 (579)
..+....+....+.+.++.....++++.++.... +..+..+..+. + ..|+|.. +.+
T Consensus 166 T~p~~~tpg~~~i~~ml~~a~~~pvn~gf~gkG~~~~l~eL~el~~a-G--------A~GfK~~-------------ed~ 223 (568)
T PRK13985 166 TNATTITPGRRNLKWMLRAAEEYSMNLGFLGKGNSSNDASLADQIEA-G--------AIGFKIH-------------EDW 223 (568)
T ss_pred CCCcCCCCcHHHHHHHHHHhhccCccEEEecCCccCCHHHHHHHHHc-C--------CEEEEEC-------------Ccc
Confidence 2221112222211122222233456666553221 12222222111 0 1123321 111
Q ss_pred CCCCCCCcccCCCHHHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhcCCCCCCceEeeccCC---ChhhHHH
Q 008063 352 ADEPHNYGLQVMELESLLSMTMASDKSGLQVAIHAIGDRANDLVLDMYKSVVVTTGKRDQRFRIEHAQHL---ASGTAAR 428 (579)
Q Consensus 352 ~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~i~iH~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~H~~~~---~~~~~~~ 428 (579)
..++..+.+.++.++++++++.+|+....+....-..++. ..+...++.|.... +..++-+
T Consensus 224 ----------g~t~~~I~~aL~vA~~~dv~V~iHtdtlne~g~~E~t~aa------~~gr~iH~~H~egaggghapdi~~ 287 (568)
T PRK13985 224 ----------GTTPSAINHALDVADKYDVQVAIHTDTLNEAGCVEDTMAA------IAGRTMHTFHTEGAGGGHAPDIIK 287 (568)
T ss_pred ----------CCCHHHHHHHHHHHHHcCCEEEEeCCCCCCchhhHHHHHH------hcCCeEEEEeccCCCccchhhHHH
Confidence 1578899999999999999999999743222111111111 23446677777643 3334444
Q ss_pred Hhh-CCcEEEecccccc------------------------cchhHHHHhhChhhhhhhhhhHHHHHHCCCeeeecCCCC
Q 008063 429 FGD-QGIVASMQPQHLL------------------------DDADSARKKLGVDRAERESYLFQSLLANNALLALGSDWP 483 (579)
Q Consensus 429 ~~~-~~i~~~~~p~~~~------------------------~~~~~~~~~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD~~ 483 (579)
+.. .++-.+.+..... ++....++++. . +....-..|++.|+...++||+.
T Consensus 288 ~~~~~nvlp~stnpt~p~t~nt~~e~~dm~m~~h~l~~~~~ed~afa~srir---~-~tiaaed~l~d~G~~s~~~SDs~ 363 (568)
T PRK13985 288 VAGEHNILPASTNPTIPFTVNTEAEHMDMLMVCHHLDKSIKEDVQFADSRIR---P-QTIAAEDTLHDMGIFSITSSDSQ 363 (568)
T ss_pred HcCCCCcccCCCCCCCCCccCchhhhcCeEEeecCCCCCCcchhhhhhhhcc---c-cccccCchhhhCCcEEEEeccch
Confidence 433 3433322211111 22222222322 2 44555667899999999999987
Q ss_pred CCC------CCHHHHHHHHHc-ccCCCCCCCCCCCCCCCHHHHHHHHcHHHHHhcccCCccccccCCCcccEEEeCCCCC
Q 008063 484 VAD------INPLCAIRTAMK-RIPPGWDNAWIPSERISLTDALIAHTLSAARACFLENDVGSLSPGKIADFVILSTSSW 556 (579)
Q Consensus 484 ~~~------~~~~~~~~~~~~-~~~~~~~~~~~~~~~ls~~~al~~~T~npA~~lgl~~~~G~I~~G~~ADlvvld~~~~ 556 (579)
... ...|+....+.. +...... -...-.++.+++|+++|.|||+++|+++.+|+|++||.|||||||.+++
T Consensus 364 ~mgr~ge~~~r~~q~a~k~~~~~g~l~~~--~~~~dnl~v~eAL~~yTin~A~A~G~e~~vGSLe~GK~ADlVv~d~d~f 441 (568)
T PRK13985 364 AMGRVGEVITRTWQTADKNKKEFGRLKEE--KGDNDNFRIKRYLSKYTINPAIAHGISEYVGSVEVGKVADLVLWSPAFF 441 (568)
T ss_pred hhCcccceeeehHHHHHHHHHhcCCCCCc--cccccccCHHHHHHHHhHHHHHHcCcccCceeECCCCccCEEEEcCccC
Confidence 443 678888888876 3322111 1123468999999999999999999999999999999999999999987
Q ss_pred CChhhccCCeEEEEEECCEEeCC
Q 008063 557 EDFAAEVSASIEATYVSGVQAYP 579 (579)
Q Consensus 557 ~~~~~~~~~~v~~v~v~G~~v~~ 579 (579)
.. ++..||++|+++|.
T Consensus 442 ~~-------~pe~vi~~G~iv~~ 457 (568)
T PRK13985 442 GV-------KPNMIIKGGFIALS 457 (568)
T ss_pred CC-------ChheEEECCEEEEc
Confidence 52 57799999999984
|
|
| >PRK15446 phosphonate metabolism protein PhnM; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.5e-29 Score=257.45 Aligned_cols=356 Identities=18% Similarity=0.167 Sum_probs=215.4
Q ss_pred CccEEEEcCeEEeCCCCCCeeeEEEEECCEEEEecChHHHHhhccCCCeEEeCCCCeeecccccccccccccCccccccc
Q 008063 44 EADLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHFIPGGLQMARVK 123 (579)
Q Consensus 44 ~~~~likn~~v~~~~~~~~~~~~v~I~~GkI~~Ig~~~~~~~~~~~~~~viD~~g~~V~PG~ID~H~H~~~~~~~~~~~~ 123 (579)
+++++|+|++|+++++. ..++|+|+||||++|++..+ +..++||++|++|+|||||+|+|......
T Consensus 1 ~~~~~i~~~~v~~~~~~--~~~~i~i~~g~I~~i~~~~~------~~~~~iDa~g~~v~PG~ID~H~h~~~~~~------ 66 (383)
T PRK15446 1 MMEMILSNARLVLPDEV--VDGSLLIEDGRIAAIDPGAS------ALPGAIDAEGDYLLPGLVDLHTDNLEKHL------ 66 (383)
T ss_pred CccEEEECcEEEcCCCc--eeeeEEEECCEEEEecCCCC------CCCceEeCCCCEEEeCeEEcccCCccccc------
Confidence 36799999999987653 37799999999999997432 23478999999999999999997532100
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCCCCeEEEeCCCCCCCCCCCCChHHhhhhCCCCeEEEEeCCCchhhhcHHHHHHcCCCC
Q 008063 124 LRGVSHKDEFVRRVKEAVKNSKKGSWILGGGWNNDLWGGDLPMASWIDDITPHNPVWLSRMDGHMGLANSVALQLVGITN 203 (579)
Q Consensus 124 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~p~~~~ld~~~~~~p~~~~~~~~~~~~~n~~~~~~~g~~~ 203 (579)
.|
T Consensus 67 ----------------------------------------~p-------------------------------------- 68 (383)
T PRK15446 67 ----------------------------------------AP-------------------------------------- 68 (383)
T ss_pred ----------------------------------------CC--------------------------------------
Confidence 00
Q ss_pred CCCCCCCCeEEeCCCCCcCEEEhHhHHHHhcccCCCCCHHHHHHHHHHHHHHHHhcCccEEEeCCcCC--C--CCccccc
Q 008063 204 LSEDPNGGTIMKTSSGEPTGLLIDAAMKLILPWIPEVSVDERREALLRASNLALSRGVTTVVDFGRYY--P--GESVQLS 279 (579)
Q Consensus 204 ~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Git~v~~~~~~~--~--~~~~~~~ 279 (579)
.++.. -...+.+....+.+.+.|+||+.|+.... + +......
T Consensus 69 -----~~~~~-----------------------------~~~~~~~~~~~~~a~~gG~Tt~~d~~~~~~~~~~~~~~~~~ 114 (383)
T PRK15446 69 -----RPGVD-----------------------------WPADAALAAHDAQLAAAGITTVFDALSVGDEEDGGLRSRDL 114 (383)
T ss_pred -----CCCCc-----------------------------cchHHHHHHHHHHHHhCCccEeeeeeEeccCCCCCcccHHH
Confidence 00000 00113455567889999999999963211 1 1111111
Q ss_pred hHHHHHHHHHHhhcCCCeeEEEEccCcc--chhhHHHHHHhcCCCCCCceEEceEEEEEcCccCCCcc--------cccC
Q 008063 280 WEDFADVYQWASYSEKMKIRVCLFFPLE--TWSSLADLINKTGHVLSDWVYLGGVKAFADGSLGSNSA--------LFHE 349 (579)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~i~v~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~k~~~dg~~~~~~~--------~~~~ 349 (579)
...+.+.+......+..-+++.++.... +.+...+...... ....++|.+.|...+.... ....
T Consensus 115 ~~~~~~~~~~~~~~~~~~vD~~~h~~~~~~~~~~~~~l~~~~~------~g~~~~k~fm~~~p~~~~~~~~~~~~~~~~~ 188 (383)
T PRK15446 115 ARKLIDAIEEARARGLLRADHRLHLRCELTNPDALELFEALLA------HPRVDLVSLMDHTPGQRQFRDLEKYREYYAG 188 (383)
T ss_pred HHHHHHHHHHhhhcCchhccceeEEEEEecCcchHHHHHHHhc------CCCcCEEEEeCCCCccccccCHHHHHHHHHh
Confidence 1122233332122344444444433332 2122222222111 1223567777765321100 0000
Q ss_pred CCCCCCC----------CCcccCCCHHHHHHHHHHHHHCCCeEEEEec-chHHHHHHHHHHHHHHHhcCCCCCCceEeec
Q 008063 350 PYADEPH----------NYGLQVMELESLLSMTMASDKSGLQVAIHAI-GDRANDLVLDMYKSVVVTTGKRDQRFRIEHA 418 (579)
Q Consensus 350 ~~~~~~~----------~~~~~~~~~~~l~~~~~~a~~~g~~i~iH~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~i~H~ 418 (579)
.+. ..+ ......++.+.++++++.|+++|+++..|+. +...+....+ .| ...+.|
T Consensus 189 ~~g-~~~~e~~~~~~~~~~~~~~~~~e~i~~~v~~A~~~g~~v~sH~~~~~~~i~~a~~--------~G----v~~~e~- 254 (383)
T PRK15446 189 KYG-LSDEEFDAFVEERIALSARYAPPNRRAIAALARARGIPLASHDDDTPEHVAEAHA--------LG----VAIAEF- 254 (383)
T ss_pred hcC-CCHHHHHHHHHHHHHhHhhcCHHHHHHHHHHHHHCCCceeecCCCCHHHHHHHHH--------cC----CceeeC-
Confidence 000 000 0011235789999999999999999999994 4433332221 12 223333
Q ss_pred cCCChhhHHHHhhCCcEEEecccccccchhHHHHhhChhhhhhhhhhHHHHHHCCCeeeecCCCCCCCCCHHHHHHHHHc
Q 008063 419 QHLASGTAARFGDQGIVASMQPQHLLDDADSARKKLGVDRAERESYLFQSLLANNALLALGSDWPVADINPLCAIRTAMK 498 (579)
Q Consensus 419 ~~~~~~~~~~~~~~~i~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD~~~~~~~~~~~~~~~~~ 498 (579)
..+.+..+.+++.|+.+..++...... +. .....+++.+++.|+++++|||.. +.+++..+....
T Consensus 255 -~~~~e~~~~~~~~g~~v~~~~p~~~r~--------~~---~~~~~~~~~~~~~Gv~~~lgSD~~--p~~~~~~~~~~~- 319 (383)
T PRK15446 255 -PTTLEAARAARALGMSVLMGAPNVVRG--------GS---HSGNVSALDLAAAGLLDILSSDYY--PASLLDAAFRLA- 319 (383)
T ss_pred -CCcHHHHHHHHHCCCEEEeCCcccccC--------Cc---ccchHhHHHHHHCCCcEEEEcCCC--hhhHHHHHHHHH-
Confidence 456777888888898877664321100 00 023446788999999999999973 334444433322
Q ss_pred ccCCCCCCCCCCCCCCCHHHHHHHHcHHHHHhcccCCccccccCCCcccEEEeCCCCCCChhhccCCeEEEEEECCEEeC
Q 008063 499 RIPPGWDNAWIPSERISLTDALIAHTLSAARACFLENDVGSLSPGKIADFVILSTSSWEDFAAEVSASIEATYVSGVQAY 578 (579)
Q Consensus 499 ~~~~~~~~~~~~~~~ls~~~al~~~T~npA~~lgl~~~~G~I~~G~~ADlvvld~~~~~~~~~~~~~~v~~v~v~G~~v~ 578 (579)
...+++++++++++|.|||+.+|++++ |+|++|+.|||+|+|.++. ...+..||++|++||
T Consensus 320 -----------~~~gls~~~al~~~T~npA~~lgl~~~-G~I~~G~~ADlvv~d~~~~-------~~~v~~v~~~G~~v~ 380 (383)
T PRK15446 320 -----------DDGGLDLPQAVALVTANPARAAGLDDR-GEIAPGKRADLVRVRRAGG-------LPVVRAVWRGGRRVF 380 (383)
T ss_pred -----------HhcCCCHHHHHHHHhHHHHHHcCCCCC-cCcCCCCcCCEEEEcCCCC-------CcchheEEECCEEEE
Confidence 234699999999999999999999764 9999999999999998831 137889999999987
Q ss_pred C
Q 008063 579 P 579 (579)
Q Consensus 579 ~ 579 (579)
.
T Consensus 381 ~ 381 (383)
T PRK15446 381 L 381 (383)
T ss_pred e
Confidence 4
|
|
| >TIGR03178 allantoinase allantoinase | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.7e-28 Score=257.65 Aligned_cols=361 Identities=19% Similarity=0.242 Sum_probs=219.4
Q ss_pred cEEEEcCeEEeCCCCCCeeeEEEEECCEEEEecChHHHHhhccCCCeEEeCCCCeeecccccccccccccCccccccccC
Q 008063 46 DLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHFIPGGLQMARVKLR 125 (579)
Q Consensus 46 ~~likn~~v~~~~~~~~~~~~v~I~~GkI~~Ig~~~~~~~~~~~~~~viD~~g~~V~PG~ID~H~H~~~~~~~~~~~~~~ 125 (579)
+++|+|++|+++++. ..++|+|+||||++|++... +++.++||++|++|+|||||+|+|+...+..
T Consensus 1 dl~i~~~~v~~~~~~--~~~~v~i~dg~I~~i~~~~~-----~~~~~~id~~g~~v~PG~ID~H~H~~~~~~~------- 66 (443)
T TIGR03178 1 DLIIRGGRVILPNGE--READVGVKGGKIAAIGPDIL-----GPAAKIIDAGGLVVFPGVVDTHVHINEPGRT------- 66 (443)
T ss_pred CEEEECcEEECCCCc--eEEEEEEECCEEEEeeCCCC-----CCCCeEEECCCCEEeccEeccccccCCCCcc-------
Confidence 478999999998654 56899999999999987521 2456899999999999999999998542110
Q ss_pred CCCCHHHHHHHHHHHHHcCCCCCeEEEeCCCCCCCCCCCCChHHhhhhCCCCeEEEEeCCCchhhhcHHHHHHcCCCCCC
Q 008063 126 GVSHKDEFVRRVKEAVKNSKKGSWILGGGWNNDLWGGDLPMASWIDDITPHNPVWLSRMDGHMGLANSVALQLVGITNLS 205 (579)
Q Consensus 126 ~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~p~~~~ld~~~~~~p~~~~~~~~~~~~~n~~~~~~~g~~~~~ 205 (579)
T Consensus 67 -------------------------------------------------------------------------------- 66 (443)
T TIGR03178 67 -------------------------------------------------------------------------------- 66 (443)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCeEEeCCCCCcCEEEhHhHHHHhcccCCCCCHHHHHHHHHHHHHHHHhcCccEEEeCCc-CCCCCccccchHHHH
Q 008063 206 EDPNGGTIMKTSSGEPTGLLIDAAMKLILPWIPEVSVDERREALLRASNLALSRGVTTVVDFGR-YYPGESVQLSWEDFA 284 (579)
Q Consensus 206 ~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Git~v~~~~~-~~~~~~~~~~~~~~~ 284 (579)
..+.+....+.+++.|+|++.++.. ..+ +..+.+.+.
T Consensus 67 ---------------------------------------~~~~~~~~~~~~~~gGvTtv~dmp~~~~p---~~~~~~~~~ 104 (443)
T TIGR03178 67 ---------------------------------------EWEGFETGTRAAAAGGITTYIDMPLNSIP---ATTTRASLE 104 (443)
T ss_pred ---------------------------------------ccchHHHHHHHHHcCCeEEEEECCCCCCC---CCCcHHHHH
Confidence 0012334566789999999999852 212 222222222
Q ss_pred HHHHHHhhcCCCeeEEEEcc--CccchhhHHHHHHhcCCCCCCceEEceEEEEEcCccCCCcccccCCCCCCCCCCcccC
Q 008063 285 DVYQWASYSEKMKIRVCLFF--PLETWSSLADLINKTGHVLSDWVYLGGVKAFADGSLGSNSALFHEPYADEPHNYGLQV 362 (579)
Q Consensus 285 ~~~~~~~~~~~~~i~v~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~g~k~~~dg~~~~~~~~~~~~~~~~~~~~~~~~ 362 (579)
...+.... ...+++..+. ...+..+..++... ...++|++.+.. .+ .....
T Consensus 105 ~~~~~~~~--~~~~d~~~~~~~~~~~~~~i~~~~~~---------G~~~ik~~~~~~---------~~-------~~~~~ 157 (443)
T TIGR03178 105 AKFEAAKG--KLAVDVGFWGGLVPYNLDDLRELDEA---------GVVGFKAFLSPS---------GD-------DEFPH 157 (443)
T ss_pred HHHHHhcc--CCceeEEEEeccCCCCHHHHHHHHHC---------CCcEEEEEeccc---------CC-------CCccc
Confidence 33333322 2233443322 22222222222110 122455553210 00 01123
Q ss_pred CCHHHHHHHHHHHHHCCCeEEEEecchHHHHHH------------------------HHHHHHHHHhcCCCCCCceEeec
Q 008063 363 MELESLLSMTMASDKSGLQVAIHAIGDRANDLV------------------------LDMYKSVVVTTGKRDQRFRIEHA 418 (579)
Q Consensus 363 ~~~~~l~~~~~~a~~~g~~i~iH~~g~~~~~~~------------------------~~~~~~~~~~~~~~~~~~~i~H~ 418 (579)
.+.+.+.++++.+++.|+++.+|+......+.. .....+.....-..+.+.++.|.
T Consensus 158 ~~~~~l~~~~~~a~~~g~~v~~H~E~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~ae~~~~~~~~~la~~~g~~vhi~Hi 237 (443)
T TIGR03178 158 VDDWQLYKGMRELARLGQLLLVHAENPAITSALGEEAPPQGGVGADAYLASRPVFAEVEAIRRTLALAKVTGCRVHVVHL 237 (443)
T ss_pred CCHHHHHHHHHHHHhcCCeEEEeccChHHHHHHHHHHHhcCCCChhHhcCcCCHHHHHHHHHHHHHHHHHhCCCEEEEeC
Confidence 678899999999999999999997643222211 11111111111112457788888
Q ss_pred cCCC-hhhHHHHhhCC--cEEEecccccccchhHHHH------hhChhhhhhhhhhHHHHHHCCCeeeecCCCCCCCC--
Q 008063 419 QHLA-SGTAARFGDQG--IVASMQPQHLLDDADSARK------KLGVDRAERESYLFQSLLANNALLALGSDWPVADI-- 487 (579)
Q Consensus 419 ~~~~-~~~~~~~~~~~--i~~~~~p~~~~~~~~~~~~------~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD~~~~~~-- 487 (579)
.... -+.++.+++.| +++.+||++.....+.+.. ..++.|.......+.+.++.|...+++||......
T Consensus 238 ss~~~~~~i~~~~~~g~~it~e~~ph~l~l~~~~~~~~~~~~~~~Pplr~~~~~~~l~~~l~~G~i~~i~SDh~p~~~~~ 317 (443)
T TIGR03178 238 SSAEAVELITEAKQEGLDVTVETCPHYLTLTAEEVPDGGTLAKCAPPIRDLANQEGLWEALLNGLIDCVVSDHSPCTPDL 317 (443)
T ss_pred CCHHHHHHHHHHHHCCCcEEEEECccceEecHHHhhCcCcceEEcCCCCChHHHHHHHHHHHcCCccEEeCCCCCCChHH
Confidence 7633 34455556665 5667799997655544322 23344443445567777889999999999853321
Q ss_pred ----CHH----------HHHHHHHcccCCCCCCCCCCCCCCCHHHHHHHHcHHHHHhcccCCccccccCCCcccEEEeCC
Q 008063 488 ----NPL----------CAIRTAMKRIPPGWDNAWIPSERISLTDALIAHTLSAARACFLENDVGSLSPGKIADFVILST 553 (579)
Q Consensus 488 ----~~~----------~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~npA~~lgl~~~~G~I~~G~~ADlvvld~ 553 (579)
+.+ ..+..++.. ...+.+++++++++++|.|||+.+|++ .+|+|++|+.|||||+|.
T Consensus 318 K~~~~~~~~~~G~~g~e~~l~~~~~~--------~~~~~~l~~~~~~~~~t~~pA~~~g~~-~~G~l~~G~~Ad~vi~d~ 388 (443)
T TIGR03178 318 KRAGDFFKAWGGIAGLQSTLDVMFDE--------AVQKRGLPLEDIARLMATNPAKRFGLA-QKGRIAPGKDADFVFVDP 388 (443)
T ss_pred cCcCChhhCCCCeeEHHHhHHHHHHH--------HHHhcCCCHHHHHHHHhHHHHHHcCCC-CCCccCCCCcCCEEEEcC
Confidence 111 001111110 012456999999999999999999995 479999999999999998
Q ss_pred C-CCC-Chhhc-------------cCCeEEEEEECCEEeC
Q 008063 554 S-SWE-DFAAE-------------VSASIEATYVSGVQAY 578 (579)
Q Consensus 554 ~-~~~-~~~~~-------------~~~~v~~v~v~G~~v~ 578 (579)
+ ++. +...+ ...+|..||++|++||
T Consensus 389 ~~~~~~~~~~~~~~~~~~p~~g~~~~g~v~~t~v~G~~v~ 428 (443)
T TIGR03178 389 DESYTLTPDDLYYRHKVSPYVGRTIGGRVRATYLRGQCIY 428 (443)
T ss_pred CCcEEEcHHHhhhcCCCCCcCCcEEeeEEEEEEECCEEEE
Confidence 5 543 22111 1457999999999987
|
This enzyme carries out the first step in the degradation of allantoin, a ring-opening hydrolysis. The seed members of this model are all in the vicinity of other genes involved in the processes of xanthine/urate/allantoin catabolism. Although not included in the seed, many eukaryotic homologs of this family are included above the trusted cutoff. Below the noise cutoff are related hydantoinases. |
| >TIGR01792 urease_alph urease, alpha subunit | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.9e-29 Score=259.56 Aligned_cols=347 Identities=20% Similarity=0.236 Sum_probs=209.6
Q ss_pred cCCCccEEEEcCeEEeCCCCCCeeeEEEEECCEEEEecChHHHHh------hccCCCeEEeCCCCeeecccccccccccc
Q 008063 41 TNLEADLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQ------LAADGTNVLNLQGKVVVPGFIDSHVHFIP 114 (579)
Q Consensus 41 ~~~~~~~likn~~v~~~~~~~~~~~~v~I~~GkI~~Ig~~~~~~~------~~~~~~~viD~~g~~V~PG~ID~H~H~~~ 114 (579)
....|+++|+|++|+|..+ ...++|.|+||||++|++..+... ..+.+.++||++|++|+|||||+|+|+..
T Consensus 62 ~~~~MDlVIkNg~VID~~g--i~kaDI~IkDGrIaaIG~~~~p~~~~~v~~~~~~~tEVIDa~GkIV~PGlIDtHvH~~~ 139 (567)
T TIGR01792 62 NAGVLDLVITNALILDWTG--IYKADIGIKNGRIVGIGKAGNPDTMDGVDMIVGASTEAISGEGKIVTAGGIDTHVHYIS 139 (567)
T ss_pred ccccCcEEEECeEEECCCC--eEEEEEEEECCEEEEEcCCCcccccccccccCCCCCeEEECCCCEEEECeEEeecCCCC
Confidence 3456889999999999644 467899999999999997532210 00135689999999999999999999732
Q ss_pred cCccccccccCCCCCHHHHHHHHHHHHHcCCCCCeEEEeCCCCCCCCCCCCChHHhhhhCCCCeEEEEeCCCchhhhcHH
Q 008063 115 GGLQMARVKLRGVSHKDEFVRRVKEAVKNSKKGSWILGGGWNNDLWGGDLPMASWIDDITPHNPVWLSRMDGHMGLANSV 194 (579)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~p~~~~ld~~~~~~p~~~~~~~~~~~~~n~~ 194 (579)
+.
T Consensus 140 P~------------------------------------------------------------------------------ 141 (567)
T TIGR01792 140 PQ------------------------------------------------------------------------------ 141 (567)
T ss_pred cc------------------------------------------------------------------------------
Confidence 10
Q ss_pred HHHHcCCCCCCCCCCCCeEEeCCCCCcCEEEhHhHHHHhcccCCCCCHHHHHHHHHHHHHHHHhcCccEEEeCCcCC-CC
Q 008063 195 ALQLVGITNLSEDPNGGTIMKTSSGEPTGLLIDAAMKLILPWIPEVSVDERREALLRASNLALSRGVTTVVDFGRYY-PG 273 (579)
Q Consensus 195 ~~~~~g~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Git~v~~~~~~~-~~ 273 (579)
..+.++..|+|++.+.|.+. ++
T Consensus 142 ---------------------------------------------------------~~~aAl~gGVTTmI~~Gtgp~~~ 164 (567)
T TIGR01792 142 ---------------------------------------------------------QVQAALDNGITTLIGGGTGPADG 164 (567)
T ss_pred ---------------------------------------------------------HHHHHHhCceEEEecCCCccccC
Confidence 24568899999999965421 11
Q ss_pred CccccchHHHHHHHHHHhhcCCCeeEEEEccCcc--chhhHHHHHHhcCCCCCCceEEceEEEEEcCccCCCcccccCCC
Q 008063 274 ESVQLSWEDFADVYQWASYSEKMKIRVCLFFPLE--TWSSLADLINKTGHVLSDWVYLGGVKAFADGSLGSNSALFHEPY 351 (579)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~k~~~dg~~~~~~~~~~~~~ 351 (579)
..+....+......+.++.....++++.++.... ......+..+. . ..++| .+.+|
T Consensus 165 t~pTt~t~~~~~~~~~l~aa~~~~in~g~~g~g~~~~~~~L~e~i~a----G-----a~gfK-------------~h~~y 222 (567)
T TIGR01792 165 TNATTCTPGPWYLHRMLQAADGLPINFGFTGKGSGSGPAALIEQIEA----G-----ACGLK-------------VHEDW 222 (567)
T ss_pred CCCcccccchhhHHHHHHHhccCCccEEEEeCCccchHHHHHHHHHc----C-----CcEEE-------------eCCCC
Confidence 1111112222222222223344566655442211 11111121110 0 01222 12222
Q ss_pred CCCCCCCcccCCCHHHHHHHHHHHHHCCCeEEEEecchHH---HHHHHHHHHHHHHhcCCCCCCceEeecc---CCChhh
Q 008063 352 ADEPHNYGLQVMELESLLSMTMASDKSGLQVAIHAIGDRA---NDLVLDMYKSVVVTTGKRDQRFRIEHAQ---HLASGT 425 (579)
Q Consensus 352 ~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~i~iH~~g~~~---~~~~~~~~~~~~~~~~~~~~~~~i~H~~---~~~~~~ 425 (579)
. .+++.+.+.++.|+++|+++++|+....+ ++..++.+.. ......|.. ..+..+
T Consensus 223 ~----------~s~e~L~~al~~A~e~gv~V~iH~ET~~E~g~ve~t~~a~g~---------rpIh~~H~~G~g~ghapd 283 (567)
T TIGR01792 223 G----------ATPAAIDNALSVADEYDVQVAVHTDTLNESGFVEDTIAAFKG---------RTIHTYHTEGAGGGHAPD 283 (567)
T ss_pred C----------CCHHHHHHHHHHHHHcCCEEEEeCCCcccchHHHHHHHHHCC---------CcchhHhhcCCCCCcHHH
Confidence 2 78999999999999999999999964454 4444444422 122222222 222223
Q ss_pred HHHH-hhCCcEEEec-cc-----------------------ccccchhHHHHhhChhhhhhhhhhHHHHHHCCCeeeecC
Q 008063 426 AARF-GDQGIVASMQ-PQ-----------------------HLLDDADSARKKLGVDRAERESYLFQSLLANNALLALGS 480 (579)
Q Consensus 426 ~~~~-~~~~i~~~~~-p~-----------------------~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~~Gi~v~~gs 480 (579)
+-++ ...++-.+.+ |. ...++....++++.+ +....-..|++.|+..+++|
T Consensus 284 i~~~~~~~~~~~~st~pt~p~~~~~~~e~~~m~~~~h~l~~~~~~d~~~a~~r~r~----~t~~ae~~l~d~G~~~~~~s 359 (567)
T TIGR01792 284 IIVVVGYNNILPSSTNPTLPYTVNTIDEHLDMLMVCHHLNPKIPEDVAFAESRIRK----ETIAAEDVLQDMGAISMISS 359 (567)
T ss_pred HHHHcCCCCcccCCCCCCCCCccCchhhhcCeEEEeccCCCCCcccchhhhhhccc----eeccccchhhhCCcEEEecC
Confidence 3333 2233322211 11 111223333333332 44555677899999999999
Q ss_pred CCCCC------CCCHHHHHHHHHccc-CCCCCCCCCCCCCCCHHHHHHHHcHHHHHhcccCCccccccCCCcccEEEeCC
Q 008063 481 DWPVA------DINPLCAIRTAMKRI-PPGWDNAWIPSERISLTDALIAHTLSAARACFLENDVGSLSPGKIADFVILST 553 (579)
Q Consensus 481 D~~~~------~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ls~~~al~~~T~npA~~lgl~~~~G~I~~G~~ADlvvld~ 553 (579)
|+... ....|+....+.... .......+..++.++.+ |+++|.|||+++|+++.+|+|++||.||||||+.
T Consensus 360 Ds~~mgr~~~~~~r~~q~a~k~~~~~g~~~~~~~~~~~~rl~r~--L~~yT~n~A~a~g~~~~~GsLe~Gk~ADlVv~~~ 437 (567)
T TIGR01792 360 DSQAMGRIGEVVTRCWQTADKMKKQRGPLPGDSPGNDNNRVKRY--VAKYTINPAITHGISDYIGSIEVGKLADLVLWEP 437 (567)
T ss_pred CchhhCcccceeechHHHHHHHHHhcCCCcccccCChhhhHHHH--HHHHhHHHHHHcCcccCceeeCCCCccCEEEEcC
Confidence 98633 256777766664321 11111112234455555 9999999999999999999999999999999999
Q ss_pred CCCCChhhccCCeEEEEEECCEEeC
Q 008063 554 SSWEDFAAEVSASIEATYVSGVQAY 578 (579)
Q Consensus 554 ~~~~~~~~~~~~~v~~v~v~G~~v~ 578 (579)
++|.. ++..||++|+++|
T Consensus 438 d~f~~-------~p~~v~~~G~i~~ 455 (567)
T TIGR01792 438 AFFGV-------KPDMVLKGGLIAW 455 (567)
T ss_pred cccCC-------ChheEEECCEEEE
Confidence 98762 4678999999886
|
This model describes the urease alpha subunit UreC (designated beta or B chain, UreB in Helicobacter species). Accessory proteins for incorporation of the nickel cofactor are usually found in addition to the urease alpha, beta, and gamma subunits. The trusted cutoff is set above the scores of many reported fragments and of a putative second urease alpha chain in Streptomyces coelicolor. |
| >cd01315 L-HYD_ALN L-Hydantoinases (L-HYDs) and Allantoinase (ALN); L-Hydantoinases are a member of the dihydropyrimidinase family, which catalyzes the reversible hydrolytic ring opening of dihydropyrimidines and hydantoins (five-membered cyclic diamides used in biotechnology) | Back alignment and domain information |
|---|
Probab=99.97 E-value=4e-28 Score=258.53 Aligned_cols=363 Identities=21% Similarity=0.263 Sum_probs=218.3
Q ss_pred cEEEEcCeEEeCCCCCCeeeEEEEECCEEEEecChHHHHhhccCCCeEEeCCCCeeecccccccccccccCccccccccC
Q 008063 46 DLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHFIPGGLQMARVKLR 125 (579)
Q Consensus 46 ~~likn~~v~~~~~~~~~~~~v~I~~GkI~~Ig~~~~~~~~~~~~~~viD~~g~~V~PG~ID~H~H~~~~~~~~~~~~~~ 125 (579)
+++|+|++|+++.+ ...++|+|+||||++|++.... +++.++||++|++|+|||||+|+|+...+..
T Consensus 1 dl~i~~~~v~~~~~--~~~~~v~I~~g~I~~i~~~~~~----~~~~~~iDa~G~~v~PG~ID~H~H~~~~~~~------- 67 (447)
T cd01315 1 DLVIKNGRVVTPDG--VREADIAVKGGKIAAIGPDIAN----TEAEEVIDAGGLVVMPGLIDTHVHINEPGRT------- 67 (447)
T ss_pred CEEEECCEEECCCC--ceEeEEEEECCEEEEEeCCCCC----CCCCeEEECCCCEEeccEeeceeccCCCCcc-------
Confidence 47899999999844 3567999999999999875321 2467899999999999999999998532110
Q ss_pred CCCCHHHHHHHHHHHHHcCCCCCeEEEeCCCCCCCCCCCCChHHhhhhCCCCeEEEEeCCCchhhhcHHHHHHcCCCCCC
Q 008063 126 GVSHKDEFVRRVKEAVKNSKKGSWILGGGWNNDLWGGDLPMASWIDDITPHNPVWLSRMDGHMGLANSVALQLVGITNLS 205 (579)
Q Consensus 126 ~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~p~~~~ld~~~~~~p~~~~~~~~~~~~~n~~~~~~~g~~~~~ 205 (579)
T Consensus 68 -------------------------------------------------------------------------------- 67 (447)
T cd01315 68 -------------------------------------------------------------------------------- 67 (447)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCeEEeCCCCCcCEEEhHhHHHHhcccCCCCCHHHHHHHHHHHHHHHHhcCccEEEeCCc-CCCCCccccchHHHH
Q 008063 206 EDPNGGTIMKTSSGEPTGLLIDAAMKLILPWIPEVSVDERREALLRASNLALSRGVTTVVDFGR-YYPGESVQLSWEDFA 284 (579)
Q Consensus 206 ~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Git~v~~~~~-~~~~~~~~~~~~~~~ 284 (579)
..+.+....+.+++.|+|++.++.. ..+.. ...+.+.
T Consensus 68 ---------------------------------------~~e~~~~~s~aal~gGvTtv~d~p~~~~p~~---~~~~~~~ 105 (447)
T cd01315 68 ---------------------------------------EWEGFETGTKAAAAGGITTIIDMPLNSIPPT---TTVENLE 105 (447)
T ss_pred ---------------------------------------ccccHHHHHHHHHhCCceEEEeCCCCCCCCc---CCHHHHH
Confidence 0012233566689999999999862 11211 1222222
Q ss_pred HHHHHHhhcCCCeeEEEEcc--CccchhhHHHHHHhcCCCCCCceEEceEEEEEcCccCCCcccccCCCCCCCCCCcccC
Q 008063 285 DVYQWASYSEKMKIRVCLFF--PLETWSSLADLINKTGHVLSDWVYLGGVKAFADGSLGSNSALFHEPYADEPHNYGLQV 362 (579)
Q Consensus 285 ~~~~~~~~~~~~~i~v~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~g~k~~~dg~~~~~~~~~~~~~~~~~~~~~~~~ 362 (579)
...+... ....+++..+. ......+..++... ...++|++...... .+...
T Consensus 106 ~~~~~~~--~~~~~d~~~~~~~~~~~~~ei~~l~~~---------G~~giKv~~~~~~~----------------~~~~~ 158 (447)
T cd01315 106 AKLEAAQ--GKLHVDVGFWGGLVPGNLDQLRPLDEA---------GVVGFKCFLCPSGV----------------DEFPA 158 (447)
T ss_pred HHHHHhc--cCceeeEEEEEeecCCCHHHHHHHHHc---------CCcEEEEEecccCC----------------CCccc
Confidence 2222222 12234443322 11122222222111 12356655321100 01122
Q ss_pred CCHHHHHHHHHHHHHCCCeEEEEecchHHHHH------------------------HHHHHHHHHHhcCCCCCCceEeec
Q 008063 363 MELESLLSMTMASDKSGLQVAIHAIGDRANDL------------------------VLDMYKSVVVTTGKRDQRFRIEHA 418 (579)
Q Consensus 363 ~~~~~l~~~~~~a~~~g~~i~iH~~g~~~~~~------------------------~~~~~~~~~~~~~~~~~~~~i~H~ 418 (579)
.+.+.+.++++.+++.|+++.+|+....-... ......+.....-..+.+.++.|.
T Consensus 159 ~~~~~l~~~~~~a~~~g~~v~vH~e~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~e~~~~~~~~~la~~~g~~ihi~h~ 238 (447)
T cd01315 159 VDDEQLEEAMKELAKTGSVLAVHAENPEITEALQEQAKAKGKRDYRDYLASRPVFTEVEAIQRILLLAKETGCRLHIVHL 238 (447)
T ss_pred CCHHHHHHHHHHHHhcCCeEEEEcCCHHHHHHHHHhHhhcCCCChHHhhccCCHHHHHHHHHHHHHHHHHhCCCEEEEeC
Confidence 57889999999999999999999864321110 011111111111112467888897
Q ss_pred cCCC-hhhHHHHhhCC--cEEEecccccccchhHHHH------hhChhhhhhhhhhHHHHHHCCCeeeecCCCCCCCC--
Q 008063 419 QHLA-SGTAARFGDQG--IVASMQPQHLLDDADSARK------KLGVDRAERESYLFQSLLANNALLALGSDWPVADI-- 487 (579)
Q Consensus 419 ~~~~-~~~~~~~~~~~--i~~~~~p~~~~~~~~~~~~------~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD~~~~~~-- 487 (579)
.... -+.++.++..| +++.++|++.....+.+.. ..++.|.......+...++.|.+.+++||....+.
T Consensus 239 s~~~~~~~i~~~~~~g~~i~~e~~~h~l~~~~~~~~~~~~~~~~~Pplr~~~~~~~l~~~l~~g~i~~i~SDh~p~~~~~ 318 (447)
T cd01315 239 SSAEAVPLIREARAEGVDVTVETCPHYLTFTAEDVPDGGTEFKCAPPIRDAANQEQLWEALENGDIDMVVSDHSPCTPEL 318 (447)
T ss_pred CCHHHHHHHHHHHHCCCceEEEeccccEEEcHHHccCCCCceEECCCCCChHHHHHHHHHHhCCceeEEeCCCCCCCHHH
Confidence 6422 23333444444 6777889887655544322 22344443455667778899999999999653321
Q ss_pred ------CHH----------HHHHHHHcccCCCCCCCCCCCCCCCHHHHHHHHcHHHHHhcccCCccccccCCCcccEEEe
Q 008063 488 ------NPL----------CAIRTAMKRIPPGWDNAWIPSERISLTDALIAHTLSAARACFLENDVGSLSPGKIADFVIL 551 (579)
Q Consensus 488 ------~~~----------~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~npA~~lgl~~~~G~I~~G~~ADlvvl 551 (579)
+.+ ..+...+.. +..+.+++++++++++|.|||+++|+++++|+|++|+.|||||+
T Consensus 319 k~~~~~~~~~~~~g~~g~~~~~~~~~~~--------~~~~~~~~~~~~~~~~t~~pa~~~g~~~~~G~l~~g~~Ad~~v~ 390 (447)
T cd01315 319 KLLGKGDFFKAWGGISGLQLGLPVMLTE--------AVNKRGLSLEDIARLMCENPAKLFGLSHQKGRIAVGYDADFVVW 390 (447)
T ss_pred hccCCCChhhCCCCeeEHHHhHHHHHHH--------HHHcCCCCHHHHHHHHhHHHHHHhCCCCCCccccCCCCCCEEEE
Confidence 110 001111110 01245699999999999999999999877899999999999999
Q ss_pred CCCC-CC-Chhhc-------------cCCeEEEEEECCEEeC
Q 008063 552 STSS-WE-DFAAE-------------VSASIEATYVSGVQAY 578 (579)
Q Consensus 552 d~~~-~~-~~~~~-------------~~~~v~~v~v~G~~v~ 578 (579)
|.+. +. ..+.+ ...+|..||++|++||
T Consensus 391 d~~~~~~~~~~~~~~~~~~~~~~g~~~~g~v~~ti~~G~~v~ 432 (447)
T cd01315 391 DPEEEFTVDAEDLYYKNKISPYVGRTLKGRVHATILRGTVVY 432 (447)
T ss_pred cCCCCEEEcHHHccccCCCCCccCeEEeeeEEEEEECCEEEE
Confidence 9764 21 11111 1457999999999987
|
But L-HYDs differ by having an L-enantio specificity and by lacking activity on possible natural substrates such as dihydropyrimidines. Allantoinase catalyzes the hydrolytic cleavage of the five-member ring of allantoin (5-ureidohydantoin) to form allantoic acid. |
| >PRK13404 dihydropyrimidinase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.6e-29 Score=263.35 Aligned_cols=373 Identities=19% Similarity=0.212 Sum_probs=227.3
Q ss_pred ccEEEEcCeEEeCCCCCCeeeEEEEECCEEEEecChHHHHhhccCCCeEEeCCCCeeecccccccccccccCcccccccc
Q 008063 45 ADLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHFIPGGLQMARVKL 124 (579)
Q Consensus 45 ~~~likn~~v~~~~~~~~~~~~v~I~~GkI~~Ig~~~~~~~~~~~~~~viD~~g~~V~PG~ID~H~H~~~~~~~~~~~~~ 124 (579)
++++|+|++|+++.+. ..++|+|+||||++|++.. +.+.++||++|++|+|||||+|+|+...+..
T Consensus 4 ~d~~i~~~~v~~~~~~--~~~~i~I~dg~I~~i~~~~------~~~~~~iD~~G~~v~PG~ID~H~H~~~~~~~------ 69 (477)
T PRK13404 4 FDLVIRGGTVVTATDT--FQADIGIRGGRIAALGEGL------GPGAREIDATGRLVLPGGVDSHCHIDQPSGD------ 69 (477)
T ss_pred CcEEEECCEEEcCCCc--eEEEEEEECCEEEEecCCC------CCCCeEEECCCCEEecCEEEeEEcCCccccC------
Confidence 5689999999997653 4679999999999998642 2456899999999999999999998543100
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCCCeEEEeCCCCCCCCCCCCChHHhhhhCCCCeEEEEeCCCchhhhcHHHHHHcCCCCC
Q 008063 125 RGVSHKDEFVRRVKEAVKNSKKGSWILGGGWNNDLWGGDLPMASWIDDITPHNPVWLSRMDGHMGLANSVALQLVGITNL 204 (579)
Q Consensus 125 ~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~p~~~~ld~~~~~~p~~~~~~~~~~~~~n~~~~~~~g~~~~ 204 (579)
+.
T Consensus 70 --------------------------------------~~---------------------------------------- 71 (477)
T PRK13404 70 --------------------------------------GI---------------------------------------- 71 (477)
T ss_pred --------------------------------------Cc----------------------------------------
Confidence 00
Q ss_pred CCCCCCCeEEeCCCCCcCEEEhHhHHHHhcccCCCCCHHHHHHHHHHHHHHHHhcCccEEEeCCcCCCCCccccchHHHH
Q 008063 205 SEDPNGGTIMKTSSGEPTGLLIDAAMKLILPWIPEVSVDERREALLRASNLALSRGVTTVVDFGRYYPGESVQLSWEDFA 284 (579)
Q Consensus 205 ~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Git~v~~~~~~~~~~~~~~~~~~~~ 284 (579)
...+.+....+.+...|+|++.++... .+.....+..
T Consensus 72 ---------------------------------------~~~e~~~~~s~aa~~gGvTtv~~~~~~----~~~~~~~~~l 108 (477)
T PRK13404 72 ---------------------------------------MMADDFYTGTVSAAFGGTTTVIPFAAQ----HRGQSLREAV 108 (477)
T ss_pred ---------------------------------------cccchHHHHHHHHHcCCccEEEEccCC----CCCCCHHHHH
Confidence 001234556677889999999998642 1222333333
Q ss_pred HHHHHHhhcCCCeeEEEEccCccc--hhhHHHHHHhcCCCCCCceEEceEEEEEcCccCCCcccccCCCCCCCCCCcccC
Q 008063 285 DVYQWASYSEKMKIRVCLFFPLET--WSSLADLINKTGHVLSDWVYLGGVKAFADGSLGSNSALFHEPYADEPHNYGLQV 362 (579)
Q Consensus 285 ~~~~~~~~~~~~~i~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~g~k~~~dg~~~~~~~~~~~~~~~~~~~~~~~~ 362 (579)
+..+.... ....+.+..+..... .....+....... ....++|++.+.. ...
T Consensus 109 ~~~~~~~~-~~~~vd~~~~~~~~~~~~~~~~~~v~~l~~-----~G~~~iKi~~~~~--------------------~~~ 162 (477)
T PRK13404 109 EDYHRRAA-GKAVIDYAFHLIVADPTEEVLTEELPALIA-----QGYTSFKVFMTYD--------------------DLK 162 (477)
T ss_pred HHHHHHhc-cCcEEEEEEEEEecCCChhhHHHHHHHHHH-----cCCCEEEEEecCC--------------------CCC
Confidence 33332222 222334433321111 1111111111111 1123567664210 012
Q ss_pred CCHHHHHHHHHHHHHCCCeEEEEecchHHHHHHHHH------------------------HHHHHHhcCCCCCCceEeec
Q 008063 363 MELESLLSMTMASDKSGLQVAIHAIGDRANDLVLDM------------------------YKSVVVTTGKRDQRFRIEHA 418 (579)
Q Consensus 363 ~~~~~l~~~~~~a~~~g~~i~iH~~g~~~~~~~~~~------------------------~~~~~~~~~~~~~~~~i~H~ 418 (579)
++++.+.++++.++++|.++.+|+.....++...+. ..+...-.-..+.+.++.|.
T Consensus 163 ~~~~~l~~~~~~a~~~g~~V~~Hae~~~~i~~~~~~~~~~G~~~~~~~~~~rp~~~E~~~v~~~~~la~~~g~~~hi~Hv 242 (477)
T PRK13404 163 LDDRQILDVLAVARRHGAMVMVHAENHDMIAWLTKRLLAAGLTAPKYHAISRPMLAEREATHRAIALAELVDVPILIVHV 242 (477)
T ss_pred CCHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHCCCcchhhccccCCHHHHHHHHHHHHHHHHHhCCCEEEEEC
Confidence 577899999999999999999999755433211100 01110001113567889998
Q ss_pred cCCCh-hhHHHHhhCC--cEEEecccccccchhHHHH---------hhChhhhhhhhhhHHHHHHCCCeeeecCCCCCCC
Q 008063 419 QHLAS-GTAARFGDQG--IVASMQPQHLLDDADSARK---------KLGVDRAERESYLFQSLLANNALLALGSDWPVAD 486 (579)
Q Consensus 419 ~~~~~-~~~~~~~~~~--i~~~~~p~~~~~~~~~~~~---------~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD~~~~~ 486 (579)
..-.. +.+..+++.| +++.+||++...+.+.+.. ..++.|..+....+...++.|...+++||....+
T Consensus 243 s~~~~~~~i~~~k~~g~~vt~e~~ph~L~l~~~~~~~~~~~g~~~k~~Pplr~~~d~~aL~~~l~~G~id~i~sDHap~~ 322 (477)
T PRK13404 243 SGREAAEQIRRARGRGLKIFAETCPQYLFLTAEDLDRPGMEGAKYICSPPPRDKANQEAIWNGLADGTFEVFSSDHAPFR 322 (477)
T ss_pred CCHHHHHHHHHHHHCCCeEEEEEChhhhccCHHHhcCccccCCceEECCCCCChHHHHHHHHHHhCCCceEEecCCCCCC
Confidence 75332 4444455555 7788999998876665432 3455665567788899999999999999976543
Q ss_pred CC------------HHHHHHHHHcccCCCCCCCC---CCCCCCCHHHHHHHHcHHHHHhcccCCccccccCCCcccEEEe
Q 008063 487 IN------------PLCAIRTAMKRIPPGWDNAW---IPSERISLTDALIAHTLSAARACFLENDVGSLSPGKIADFVIL 551 (579)
Q Consensus 487 ~~------------~~~~~~~~~~~~~~~~~~~~---~~~~~ls~~~al~~~T~npA~~lgl~~~~G~I~~G~~ADlvvl 551 (579)
.. .+.....++..........+ ....+++++++++++|.|||+.||+.+.+|+|++|+.||||++
T Consensus 323 ~~eK~~~~~~~~~~~~~~~~~G~~gie~~l~~ll~~~v~~~~ls~~~~~~~~t~~pA~~lgl~~~~G~i~~G~~ADlviv 402 (477)
T PRK13404 323 FDDTDGKLAAGANPSFKAIANGIPGIETRLPLLFSEGVVKGRISLNRFVALTSTNPAKLYGLYPRKGAIAIGADADIAIW 402 (477)
T ss_pred cccchhhhhccCCCCHhhCCCCcccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhCCCCCCceecCCCcCCEEEE
Confidence 21 11110000000000000000 1234699999999999999999999656899999999999999
Q ss_pred CCCC-CC-------------Chhhc-cCCeEEEEEECCEEeC
Q 008063 552 STSS-WE-------------DFAAE-VSASIEATYVSGVQAY 578 (579)
Q Consensus 552 d~~~-~~-------------~~~~~-~~~~v~~v~v~G~~v~ 578 (579)
|.+. +. ++... ...+|..||++|++||
T Consensus 403 d~~~~~~v~~~~~~~~~~~sp~~g~~~~g~v~~tiv~G~vv~ 444 (477)
T PRK13404 403 DPDREVTITNADLHHAADYTPYEGMRVTGWPVTVLSRGRVVV 444 (477)
T ss_pred cCCccEEEchHHhcccCCCCcccceEEeeeEEEEEECCEEEE
Confidence 9763 21 11111 1457889999999986
|
|
| >cd01297 D-aminoacylase D-aminoacylases (N-acyl-D-Amino acid amidohydrolases) catalyze the hydrolysis of N-acyl-D-amino acids to produce the corresponding D-amino acids, which are used as intermediates in the synthesis of pesticides, bioactive peptides, and antibiotics | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-28 Score=257.96 Aligned_cols=188 Identities=18% Similarity=0.203 Sum_probs=127.5
Q ss_pred CCHHHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhcCCCCCCceEeeccCCCh----------hhHHHHhhC
Q 008063 363 MELESLLSMTMASDKSGLQVAIHAIGDRANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLAS----------GTAARFGDQ 432 (579)
Q Consensus 363 ~~~~~l~~~~~~a~~~g~~i~iH~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~H~~~~~~----------~~~~~~~~~ 432 (579)
.+.+++.++++.++++|.++.+|+..+. .....++++........+.+.++.|+..... +.+++.++.
T Consensus 196 ~~~~~l~~~~~~a~~~g~~v~~H~e~~~--~~e~~av~~~~~~a~~~g~r~~i~H~ss~~~~~~~~~~~~l~~i~~a~~~ 273 (415)
T cd01297 196 AGTAELVALARVAARYGGVYQTHVRYEG--DSILEALDELLRLGRETGRPVHISHLKSAGAPNWGKIDRLLALIEAARAE 273 (415)
T ss_pred CCHHHHHHHHHHHHHcCCEEEEEECccc--ccHHHHHHHHHHHHHHhCCCEEEEEEecCCCcccchHHHHHHHHHHHHHh
Confidence 6789999999999999999999998542 1111222222222222356899999987765 555566664
Q ss_pred --CcEEEecccccccchhHHHHhhChhhhhhhhhhHHHHHHCCCeeeecCCCCCCC---CCHHHHHHHHHcccCCCCCCC
Q 008063 433 --GIVASMQPQHLLDDADSARKKLGVDRAERESYLFQSLLANNALLALGSDWPVAD---INPLCAIRTAMKRIPPGWDNA 507 (579)
Q Consensus 433 --~i~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD~~~~~---~~~~~~~~~~~~~~~~~~~~~ 507 (579)
++++.++|.+... ..+++.+.+. .+++++||.+..+ +..+..+...+....
T Consensus 274 G~~v~~e~~p~~~~~-----------------~~~~~~l~~~-~~~~i~SDh~~~~~~~~~~~~~~~~~l~~~~------ 329 (415)
T cd01297 274 GLQVTADVYPYGAGS-----------------EDDVRRIMAH-PVVMGGSDGGALGKPHPRSYGDFTRVLGHYV------ 329 (415)
T ss_pred CCcEEEEeCCCCCCc-----------------HHHHHHHHcC-CCceeeeCCCcCCCCCcchhCCHHHHHHHHh------
Confidence 4666788865432 1246677777 8999999986532 111111111111100
Q ss_pred CCCCCCCCHHHHHHHHcHHHHHhcccCCccccccCCCcccEEEeCCCCCCChh-----hccCCeEEEEEECCEEeC
Q 008063 508 WIPSERISLTDALIAHTLSAARACFLENDVGSLSPGKIADFVILSTSSWEDFA-----AEVSASIEATYVSGVQAY 578 (579)
Q Consensus 508 ~~~~~~ls~~~al~~~T~npA~~lgl~~~~G~I~~G~~ADlvvld~~~~~~~~-----~~~~~~v~~v~v~G~~v~ 578 (579)
.....++++++++++|.|||+.+|+++ +|+|++|+.|||||+|.+.+.... ......|..||++|++||
T Consensus 330 -~~~~~~~~~~~~~~~t~~pA~~~gl~~-~G~l~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~v~~viv~G~~v~ 403 (415)
T cd01297 330 -RERKLLSLEEAVRKMTGLPARVFGLAD-RGRIAPGYRADIVVFDPDTLADRATFTRPNQPAEGIEAVLVNGVPVV 403 (415)
T ss_pred -cccCCCCHHHHHHHHHHHHHHHhCCCC-CceeCCCCCCCEEEEcccccccccchhhhccCCCCceEEEECCEEEE
Confidence 012349999999999999999999984 699999999999999988754211 122447999999999986
|
|
| >COG0044 PyrC Dihydroorotase and related cyclic amidohydrolases [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-28 Score=254.61 Aligned_cols=368 Identities=21% Similarity=0.273 Sum_probs=236.0
Q ss_pred ccEEEEcCeEEeCCCCCCeeeEEEEECCEEEEecChHHHHhhccCCCeEEeCCCCeeecccccccccccccCcccccccc
Q 008063 45 ADLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHFIPGGLQMARVKL 124 (579)
Q Consensus 45 ~~~likn~~v~~~~~~~~~~~~v~I~~GkI~~Ig~~~~~~~~~~~~~~viD~~g~~V~PG~ID~H~H~~~~~~~~~~~~~ 124 (579)
++++|+|++++++ + ....++|+|+||+|++|++..+.. .+.++||++|++|+||+||.|+|+..++.
T Consensus 1 ~~~lIk~~~iv~~-~-~~~~~di~i~~g~I~~Ig~~l~~~----~~~~iiD~~g~~v~PG~ID~HVH~repg~------- 67 (430)
T COG0044 1 MDLLIKNARVVDP-G-EDEVADILIKDGKIAAIGKNLEPT----SGAEIIDAKGLLVLPGLVDLHVHFREPGF------- 67 (430)
T ss_pred CcEEEeccEEEcC-C-CceEecEEEECCEEEEeccCCCCC----CCCcEEECCCCEEccCeeEEEEecCCCCc-------
Confidence 4689999999998 3 337789999999999999763321 46789999999999999999999976643
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCCCeEEEeCCCCCCCCCCCCChHHhhhhCCCCeEEEEeCCCchhhhcHHHHHHcCCCCC
Q 008063 125 RGVSHKDEFVRRVKEAVKNSKKGSWILGGGWNNDLWGGDLPMASWIDDITPHNPVWLSRMDGHMGLANSVALQLVGITNL 204 (579)
Q Consensus 125 ~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~p~~~~ld~~~~~~p~~~~~~~~~~~~~n~~~~~~~g~~~~ 204 (579)
T Consensus 68 -------------------------------------------------------------------------------- 67 (430)
T COG0044 68 -------------------------------------------------------------------------------- 67 (430)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCeEEeCCCCCcCEEEhHhHHHHhcccCCCCCHHHHHHHHHHHHHHHHhcCccEEEeCCcCCCCCccccchHHHH
Q 008063 205 SEDPNGGTIMKTSSGEPTGLLIDAAMKLILPWIPEVSVDERREALLRASNLALSRGVTTVVDFGRYYPGESVQLSWEDFA 284 (579)
Q Consensus 205 ~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Git~v~~~~~~~~~~~~~~~~~~~~ 284 (579)
+.++.+..+.+.+.+.|+|+|.++....| +..+.+.+.
T Consensus 68 ---------------------------------------~~ke~~~tgs~AAa~GG~Ttv~dmPnt~P---~~~~~~~~~ 105 (430)
T COG0044 68 ---------------------------------------EHKETFETGSRAAAAGGVTTVVDMPNTKP---PIDTAEALE 105 (430)
T ss_pred ---------------------------------------chhhhHHHHHHHHHcCCceEEEECCCCCC---CCCCHHHHH
Confidence 22445677888899999999999964322 222333333
Q ss_pred HHHHHHhhcCCCeeEEEEccCccchhhH-HHHHHhcCCCCCCceEEceEEEEEcCccCCCcccccCCCCCCCCCCcccCC
Q 008063 285 DVYQWASYSEKMKIRVCLFFPLETWSSL-ADLINKTGHVLSDWVYLGGVKAFADGSLGSNSALFHEPYADEPHNYGLQVM 363 (579)
Q Consensus 285 ~~~~~~~~~~~~~i~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~k~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (579)
..++..+. ...+++..+......... .+.... ....|++.|.+.+. ...
T Consensus 106 ~~~~~a~~--~~~vd~~~~~~it~~~~~~~~~~~~--------~~~~g~~~F~~~~~--------------------~~~ 155 (430)
T COG0044 106 DKLERAKG--KSVVDYAFYGGLTKGNLGKLELTER--------GVEAGFKGFMDDST--------------------GAL 155 (430)
T ss_pred HHHHHhhc--cceeEEEEEEEEeccccchhhhhhh--------hhccceEEEecCCc--------------------CcC
Confidence 33333332 334555554433331111 111100 00345666665432 115
Q ss_pred CHHHHHHHHHHHHHCCCeEEEEecchHHHHHHHH---------------------HHHHHHHhcCCCCCCceEeeccCCC
Q 008063 364 ELESLLSMTMASDKSGLQVAIHAIGDRANDLVLD---------------------MYKSVVVTTGKRDQRFRIEHAQHLA 422 (579)
Q Consensus 364 ~~~~l~~~~~~a~~~g~~i~iH~~g~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~i~H~~~~~ 422 (579)
..+.+++.++.+++.|..+.+|+..+.-...... ..+....-....+.+.++.|.....
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~H~Ed~~~~~~~~~~~g~~~~~~~~~~~p~~aE~~~iar~~~la~~~g~~vhi~HiSt~~ 235 (430)
T COG0044 156 DDDVLEEALEYAAELGALILVHAEDDDLIAEGVMNEGLRAPELGLAGRPPIAEASAIARDLELARATGARVHICHISTKE 235 (430)
T ss_pred CHHHHHHHHHHHHhcCCeEEEecCChhHhhhHHHhcCccchhhccCCCChHHHHHHHHHHHHHHHHhCCcEEEEEcCCHH
Confidence 6889999999999999999999974421111000 0111111111124688888876543
Q ss_pred h-hhHHHHhhC--CcEEEecccccccchhHHHH------hhChhhhhhhhhhHHHHHHCCCeeeecCCCCCCCCCH----
Q 008063 423 S-GTAARFGDQ--GIVASMQPQHLLDDADSARK------KLGVDRAERESYLFQSLLANNALLALGSDWPVADINP---- 489 (579)
Q Consensus 423 ~-~~~~~~~~~--~i~~~~~p~~~~~~~~~~~~------~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD~~~~~~~~---- 489 (579)
. +.++..+.. .+++.++|+|...+.+.+.. ..+|.|.......+.+.++.|....+.||...-..+.
T Consensus 236 sv~li~~ak~~g~~vt~EvtphHL~l~~~~~~~~~~~~k~nPPLR~~~dr~aL~~~l~~G~ID~iasDHaPht~eeK~~~ 315 (430)
T COG0044 236 SVELIRAAKAEGIRVTAEVTPHHLLLDEEDIEDLGTLAKVNPPLRDEEDREALWEALKDGVIDVIASDHAPHTLEEKRLP 315 (430)
T ss_pred HHHHHHHHhhcCCceEEeecchheEccHhHhhccCcceEECCCCCCHHHHHHHHHHHhCCCCcEEEcCCCCCCHHHhccc
Confidence 3 334444444 46789999998766544433 4567776667777889999999999999975433111
Q ss_pred HHHHHHHHcccCCCCC--CCCCCCCCCCHHHHHHHHcHHHHHhcccCCccccccCCCcccEEEeCCCC-CC---------
Q 008063 490 LCAIRTAMKRIPPGWD--NAWIPSERISLTDALIAHTLSAARACFLENDVGSLSPGKIADFVILSTSS-WE--------- 557 (579)
Q Consensus 490 ~~~~~~~~~~~~~~~~--~~~~~~~~ls~~~al~~~T~npA~~lgl~~~~G~I~~G~~ADlvvld~~~-~~--------- 557 (579)
+.....++...+.... ..+..+..+|+++.+++.|.|||+++|++. .|.|++|+.|||+|+|.+- +.
T Consensus 316 f~~ap~G~~glE~~lpl~l~lv~~g~lsl~~~v~~~S~nPA~ifgl~~-~g~i~~G~~ADl~lvD~~~~~~i~~~~~~sk 394 (430)
T COG0044 316 FEEAPSGIPGLETALPLLLTLVKKGRLSLERLVELLSTNPARIFGLPP-KGAIEEGADADLVLVDPDEEWTIRAEELYSK 394 (430)
T ss_pred hhhCCCCCccHHHHHHHHHHHHHcCCcCHHHHHHHHhhCHHHHhCCCC-CCcccCCCccCEEEEcCCCCeEEchhhhccc
Confidence 1110000000000000 002245679999999999999999999987 7889999999999999872 21
Q ss_pred ----Chhhc-cCCeEEEEEECCEEeC
Q 008063 558 ----DFAAE-VSASIEATYVSGVQAY 578 (579)
Q Consensus 558 ----~~~~~-~~~~v~~v~v~G~~v~ 578 (579)
+++.. ....|.+|+++|++||
T Consensus 395 ~~~sPf~G~~~~g~v~~Ti~rG~~v~ 420 (430)
T COG0044 395 AKNSPFEGFELKGRVVATILRGKVVY 420 (430)
T ss_pred cCCCCcCCCEEeeeEEEEEECCEEEE
Confidence 12211 1669999999999987
|
|
| >PLN02795 allantoinase | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.4e-27 Score=253.29 Aligned_cols=375 Identities=19% Similarity=0.193 Sum_probs=227.0
Q ss_pred CccEEEEcCeEEeCCCCCCeeeEEEEECCEEEEecChHHHHhhccCCCeEEeCCCCeeecccccccccccccCccccccc
Q 008063 44 EADLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHFIPGGLQMARVK 123 (579)
Q Consensus 44 ~~~~likn~~v~~~~~~~~~~~~v~I~~GkI~~Ig~~~~~~~~~~~~~~viD~~g~~V~PG~ID~H~H~~~~~~~~~~~~ 123 (579)
+.+++|+|++|+++.+. ..++|+|+||||++|++..+.+.. .++.++||++|++|+|||||+|+|+...+.
T Consensus 43 ~~~~vi~~~~vv~~~~~--~~~~v~i~dG~I~~I~~~~~~~~~-~~~~~~ida~G~~v~PG~ID~H~H~~~~~~------ 113 (505)
T PLN02795 43 WPHFVLYSKRVVTPAGV--IPGAVEVEGGRIVSVTKEEEAPKS-QKKPHVLDYGNAVVMPGLIDVHVHLNEPGR------ 113 (505)
T ss_pred ccceEEECCEEEECCCe--EEEEEEEECCEEEEecCccccccc-cCCCEEEECCCCEEecCEEecccCcCCCCc------
Confidence 45899999999997553 468999999999999975321110 135689999999999999999999843211
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCCCCeEEEeCCCCCCCCCCCCChHHhhhhCCCCeEEEEeCCCchhhhcHHHHHHcCCCC
Q 008063 124 LRGVSHKDEFVRRVKEAVKNSKKGSWILGGGWNNDLWGGDLPMASWIDDITPHNPVWLSRMDGHMGLANSVALQLVGITN 203 (579)
Q Consensus 124 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~p~~~~ld~~~~~~p~~~~~~~~~~~~~n~~~~~~~g~~~ 203 (579)
T Consensus 114 -------------------------------------------------------------------------------- 113 (505)
T PLN02795 114 -------------------------------------------------------------------------------- 113 (505)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCeEEeCCCCCcCEEEhHhHHHHhcccCCCCCHHHHHHHHHHHHHHHHhcCccEEEeCCcCCCCCccccchHHH
Q 008063 204 LSEDPNGGTIMKTSSGEPTGLLIDAAMKLILPWIPEVSVDERREALLRASNLALSRGVTTVVDFGRYYPGESVQLSWEDF 283 (579)
Q Consensus 204 ~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Git~v~~~~~~~~~~~~~~~~~~~ 283 (579)
...+.+....+.+...|+|++.++... ..|.......
T Consensus 114 ----------------------------------------~~~e~~~~~~~aa~~gGvTtv~dmp~~---~~P~~~~~~~ 150 (505)
T PLN02795 114 ----------------------------------------TEWEGFPTGTKAAAAGGITTLVDMPLN---SFPSTTSVET 150 (505)
T ss_pred ----------------------------------------cchhHHHHHHHHHHcCCcEEEECCCCC---CCCCCChHHH
Confidence 001234556677888999999998521 1122223333
Q ss_pred HHHHHHHhhcCCCeeEEEEccCccc-hhhHHHHHHhcCCCCCCceEEceEEEEEcCccCCCcccccCCCCCCCCCCcccC
Q 008063 284 ADVYQWASYSEKMKIRVCLFFPLET-WSSLADLINKTGHVLSDWVYLGGVKAFADGSLGSNSALFHEPYADEPHNYGLQV 362 (579)
Q Consensus 284 ~~~~~~~~~~~~~~i~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~k~~~dg~~~~~~~~~~~~~~~~~~~~~~~~ 362 (579)
.+....... ....+.+..+..... .....+.+..... ....++|++.. +.. ..+...
T Consensus 151 ~~~~~~~~~-~~~~vd~~~~~~~~~~~~~~~~~l~~~~~-----~G~~g~k~f~~------------~~~----~~~~~~ 208 (505)
T PLN02795 151 LELKIEAAK-GKLYVDVGFWGGLVPENAHNASVLEELLD-----AGALGLKSFMC------------PSG----INDFPM 208 (505)
T ss_pred HHHHHHHhc-cCceeeeeceecccCcchhHHHHHHHHHH-----CCCcEEEEEec------------ccC----CCCccc
Confidence 332222211 222333322221111 1111111111000 01123454421 000 001123
Q ss_pred CCHHHHHHHHHHHHHCCCeEEEEecchHHHH-------------------------HHHHHHHHHHHhcCC----CCCCc
Q 008063 363 MELESLLSMTMASDKSGLQVAIHAIGDRAND-------------------------LVLDMYKSVVVTTGK----RDQRF 413 (579)
Q Consensus 363 ~~~~~l~~~~~~a~~~g~~i~iH~~g~~~~~-------------------------~~~~~~~~~~~~~~~----~~~~~ 413 (579)
.+.+.+.++++.++++|.++.+|+....-.. ..++..-.+....+. .+.+.
T Consensus 209 ~~~~~l~~~~~~a~~~g~~v~iH~E~~~l~~~~~~~~~~~~~~~~~~~~rP~~aE~~ai~~~~~la~~~~~~~~~~g~~l 288 (505)
T PLN02795 209 TTATHIKAALPVLAKYGRPLLVHAEVVSPVESDSRLDADPRSYSTYLKSRPPSWEQEAIRQLLEVAKDTRPGGVAEGAHV 288 (505)
T ss_pred CCHHHHHHHHHHHHHhCCEEEEecCChhHhhhhhhhhcCCcChhHhcccCCHHHHHHHHHHHHHHHHHhhhcccCCCCCE
Confidence 5788999999999999999999997432111 011111112222211 15688
Q ss_pred eEeeccCC-C-hhhHHHHhhCC--cEEEecccccccchhHHH------HhhChhhhhhhhhhHHHHHHCCCeeeecCCCC
Q 008063 414 RIEHAQHL-A-SGTAARFGDQG--IVASMQPQHLLDDADSAR------KKLGVDRAERESYLFQSLLANNALLALGSDWP 483 (579)
Q Consensus 414 ~i~H~~~~-~-~~~~~~~~~~~--i~~~~~p~~~~~~~~~~~------~~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD~~ 483 (579)
++.|.... . -+.++..++.| +++.+||++...+.+.+. +..+|.|..+....+...+..|.+.+++||++
T Consensus 289 hi~HiSt~~~~~e~i~~ak~~G~~Vt~Ev~ph~L~l~~~~~~~~~~~~k~~PPLR~~~d~~aL~~al~~G~Id~i~sDHa 368 (505)
T PLN02795 289 HIVHLSDAESSLELIKEAKAKGDSVTVETCPHYLAFSAEEIPDGDTRYKCAPPIRDAANRELLWKALLDGDIDMLSSDHS 368 (505)
T ss_pred EEEECCChHHHHHHHHHHHHCCCcEEEEeChhhhcccHHHccCCCCceEEcCCCCChHHHHHHHHHHhCCCceEEecCCC
Confidence 99998764 2 24455556666 888999999876555432 24556666567778889999999999999976
Q ss_pred CCCCC-------HHHH-------HHHHHcccCCCCCCCCCCCCCCCHHHHHHHHcHHHHHhcccCCccccccCCCcccEE
Q 008063 484 VADIN-------PLCA-------IRTAMKRIPPGWDNAWIPSERISLTDALIAHTLSAARACFLENDVGSLSPGKIADFV 549 (579)
Q Consensus 484 ~~~~~-------~~~~-------~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~npA~~lgl~~~~G~I~~G~~ADlv 549 (579)
..... .+.. +...+.... ....+.+++++++++++|.|||+++|++ .+|+|++|+.||||
T Consensus 369 p~~~~~K~~~~~~~~~a~~G~~gle~~l~~~~-----~~~~~~~l~l~~~v~~~s~~pA~~~gl~-~~G~l~~G~~ADlv 442 (505)
T PLN02795 369 PSPPDLKLLEEGNFLRAWGGISSLQFVLPATW-----TAGRAYGLTLEQLARWWSERPAKLAGLD-SKGAIAPGKDADIV 442 (505)
T ss_pred CCChHHhccCcCCHhhCCCCceeHHHHHHHHH-----HHHHHcCCCHHHHHHHHHHHHHHHhCCC-CCCccCCCCccCEE
Confidence 54311 0110 111111000 0013556999999999999999999994 47999999999999
Q ss_pred EeCCCC-CC---C------------hhh-ccCCeEEEEEECCEEeC
Q 008063 550 ILSTSS-WE---D------------FAA-EVSASIEATYVSGVQAY 578 (579)
Q Consensus 550 vld~~~-~~---~------------~~~-~~~~~v~~v~v~G~~v~ 578 (579)
|+|.+- |. . +.. ....+|..|+++|++||
T Consensus 443 i~d~~~~~~v~~~~~~~s~~~~~sp~~G~~l~g~v~~tiv~G~~v~ 488 (505)
T PLN02795 443 VWDPEAEFVLDESYPIYHKHKSLSPYLGTKLSGKVIATFVRGNLVF 488 (505)
T ss_pred EEcCCcceEECcchhhhhcCCCcCCCCCeEEEeEEEEEEECCEEEE
Confidence 998653 11 1 100 11458999999999987
|
|
| >cd00375 Urease_alpha Urease alpha-subunit; Urease is a nickel-dependent metalloenzyme that catalyzes the hydrolysis of urea to form ammonia and carbon dioxide | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-27 Score=248.49 Aligned_cols=341 Identities=21% Similarity=0.231 Sum_probs=213.4
Q ss_pred CCCccEEEEcCeEEeCCCCCCeeeEEEEECCEEEEecChHHHH--------hhccCCCeEEeCCCCeeeccccccccccc
Q 008063 42 NLEADLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQ--------QLAADGTNVLNLQGKVVVPGFIDSHVHFI 113 (579)
Q Consensus 42 ~~~~~~likn~~v~~~~~~~~~~~~v~I~~GkI~~Ig~~~~~~--------~~~~~~~~viD~~g~~V~PG~ID~H~H~~ 113 (579)
...++++|+|++|++..+ ....+|.|+||||++|++..+.. ...+.+.++||++|++|+|||||+|+|+.
T Consensus 62 ~~~~DlVI~Na~IiD~~g--i~~adI~IkdGrIvaIG~agnp~~~~~v~~~~~~g~~teVIDaeG~iV~PG~ID~HvH~~ 139 (567)
T cd00375 62 EDVLDLVITNALIIDYTG--IYKADIGIKDGRIVAIGKAGNPDIMDGVTPNMIVGPSTEVIAGEGKIVTAGGIDTHVHFI 139 (567)
T ss_pred cccCCEEEECeEEECCCC--cEEEEEEEECCEEEEEecCCCccccccccccccCCCCCeEEECCCCEEeeceEECccCCC
Confidence 346789999999998764 35679999999999998753210 00124578999999999999999999973
Q ss_pred ccCccccccccCCCCCHHHHHHHHHHHHHcCCCCCeEEEeCCCCCCCCCCCCChHHhhhhCCCCeEEEEeCCCchhhhcH
Q 008063 114 PGGLQMARVKLRGVSHKDEFVRRVKEAVKNSKKGSWILGGGWNNDLWGGDLPMASWIDDITPHNPVWLSRMDGHMGLANS 193 (579)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~p~~~~ld~~~~~~p~~~~~~~~~~~~~n~ 193 (579)
.++
T Consensus 140 ~P~----------------------------------------------------------------------------- 142 (567)
T cd00375 140 CPQ----------------------------------------------------------------------------- 142 (567)
T ss_pred Ccc-----------------------------------------------------------------------------
Confidence 221
Q ss_pred HHHHHcCCCCCCCCCCCCeEEeCCCCCcCEEEhHhHHHHhcccCCCCCHHHHHHHHHHHHHHHHhcCccEEEeCCcCC--
Q 008063 194 VALQLVGITNLSEDPNGGTIMKTSSGEPTGLLIDAAMKLILPWIPEVSVDERREALLRASNLALSRGVTTVVDFGRYY-- 271 (579)
Q Consensus 194 ~~~~~~g~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Git~v~~~~~~~-- 271 (579)
..+.++..|+||+.+++.+.
T Consensus 143 ----------------------------------------------------------~~~aAlagGVTTvI~~G~gP~~ 164 (567)
T cd00375 143 ----------------------------------------------------------QIEEALASGITTMIGGGTGPAA 164 (567)
T ss_pred ----------------------------------------------------------HHHHHHcCCCcEEEcCCcCccc
Confidence 13458899999999974332
Q ss_pred -CCCccccc-hHHHHHHHHHHhhcCCCeeEEEEccCc--cchhhHHHHHHhcCCCCCCceEEceEEEEEcCccCCCcccc
Q 008063 272 -PGESVQLS-WEDFADVYQWASYSEKMKIRVCLFFPL--ETWSSLADLINKTGHVLSDWVYLGGVKAFADGSLGSNSALF 347 (579)
Q Consensus 272 -~~~~~~~~-~~~~~~~~~~~~~~~~~~i~v~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~k~~~dg~~~~~~~~~ 347 (579)
.+..+... ...+...++.+ ....+++.++... ....+..+..+. ...++|...
T Consensus 165 gtnatp~t~g~~~l~~ml~aa---~~~pin~g~~gkg~~~~l~eL~e~~~a---------GA~GfK~~e----------- 221 (567)
T cd00375 165 GTKATTCTPGPWNIKRMLQAA---DGLPVNIGFLGKGNGSSPDALAEQIEA---------GACGLKLHE----------- 221 (567)
T ss_pred ccCCCCCCCCHHHHHHHHHHh---hcCCceEEEEecCccccHHHHHHHHHc---------CCEEEEecC-----------
Confidence 11112211 12222233222 2345666655322 112222222211 011333221
Q ss_pred cCCCCCCCCCCcccCCCHHHHHHHHHHHHHCCCeEEEEecchH---HHHHHHHHHHHHHHhcCCCCCCceEeeccCC---
Q 008063 348 HEPYADEPHNYGLQVMELESLLSMTMASDKSGLQVAIHAIGDR---ANDLVLDMYKSVVVTTGKRDQRFRIEHAQHL--- 421 (579)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~i~iH~~g~~---~~~~~~~~~~~~~~~~~~~~~~~~i~H~~~~--- 421 (579)
.+ ..++..+.+.++.++++++++.+|+..-. -++..+++ ..+...++.|....
T Consensus 222 --D~----------g~t~~~i~~aL~~A~~~dv~VaiHadtlne~g~~E~t~aa---------~~gr~iH~~H~egaggg 280 (567)
T cd00375 222 --DW----------GATPAAIDTCLSVADEYDVQVAIHTDTLNESGFVEDTIAA---------IKGRTIHTYHTEGAGGG 280 (567)
T ss_pred --CC----------CCCHHHHHHHHHHHHhhCCEEEEECCCCCcchHHHHHHHH---------hcCCeEEEEecCCCCcc
Confidence 11 14788999999999999999999997422 22222222 23446677776543
Q ss_pred C-hhhHHHHhhCCcEEEecccccc------------------------cchhHHHHhhChhhhhhhhhhHHHHHHCCCee
Q 008063 422 A-SGTAARFGDQGIVASMQPQHLL------------------------DDADSARKKLGVDRAERESYLFQSLLANNALL 476 (579)
Q Consensus 422 ~-~~~~~~~~~~~i~~~~~p~~~~------------------------~~~~~~~~~l~~~~~~~~~~~l~~l~~~Gi~v 476 (579)
+ ++.++.....++-.+.+..... ++....++++. . +....-..|++.|+..
T Consensus 281 hapdi~~~~~~~nvlp~stnpt~p~t~nt~~e~~dm~m~~h~l~~~~~~d~~fa~srir---~-~ti~ae~~l~d~G~~s 356 (567)
T cd00375 281 HAPDIIKVAGHPNVLPSSTNPTRPFTVNTLDEHLDMLMVCHHLDPNIPEDVAFAESRIR---A-ETIAAEDVLHDLGAIS 356 (567)
T ss_pred cchHHHHhcCCCCcccCCCCCCCCCccCchhhhcCeEEeecCCCCCCcchhhhhhhhcc---c-hhhccchhhhccCcEE
Confidence 2 3333333333433322211111 22222232332 2 4455567788999999
Q ss_pred eecCCCCCCC------CCHHHHHHHHHc-ccCCCCCCCCCCCCCCCHHHH---HHHHcHHHHHhcccCCccccccCCCcc
Q 008063 477 ALGSDWPVAD------INPLCAIRTAMK-RIPPGWDNAWIPSERISLTDA---LIAHTLSAARACFLENDVGSLSPGKIA 546 (579)
Q Consensus 477 ~~gsD~~~~~------~~~~~~~~~~~~-~~~~~~~~~~~~~~~ls~~~a---l~~~T~npA~~lgl~~~~G~I~~G~~A 546 (579)
+++||+.... ...|+....+.. +....+ ...+.+..++ |+++|.|||+++|+++.+|+|++||.|
T Consensus 357 ~~~sDs~~mgr~ge~~~r~~q~a~k~~~~~g~~~~-----~~~~~~n~r~~~~L~~~Tin~A~alG~~~~vGSLe~GK~A 431 (567)
T cd00375 357 IMSSDSQAMGRVGEVILRTWQTAHKMKAQRGPLPE-----DSGDADNFRVKRYIAKYTINPAIAHGISHEVGSVEVGKLA 431 (567)
T ss_pred EEccchhhcCccceeeechHHHHHHHHHhcCCCCc-----ccccCchHHHHHHHHHhhHHHHHHcCcccCceeeCCCCcc
Confidence 9999986332 678888777776 221111 1223566555 999999999999999999999999999
Q ss_pred cEEEeCCCCCCChhhccCCeEEEEEECCEEeCC
Q 008063 547 DFVILSTSSWEDFAAEVSASIEATYVSGVQAYP 579 (579)
Q Consensus 547 Dlvvld~~~~~~~~~~~~~~v~~v~v~G~~v~~ 579 (579)
|||||+.+++. .++..||++|+++|.
T Consensus 432 DlVv~d~~~f~-------~~p~~vi~~G~iv~~ 457 (567)
T cd00375 432 DLVLWEPAFFG-------VKPEMVLKGGFIAYA 457 (567)
T ss_pred CEEEEcCcccC-------CCeeEEEECCEEEEe
Confidence 99999998864 367899999999973
|
Nickel-dependent ureases are found in bacteria, fungi and plants. Their primary role is to allow the use of external and internally generated urea as a nitrogen source. The enzyme consists of 3 subunits, alpha, beta and gamma, which can be fused and present on a single protein chain and which in turn forms multimers, mainly trimers. The large alpha subunit is the catalytic domain containing an active site with a bi-nickel center complexed by a carbamylated lysine. The beta and gamma subunits play a role in subunit association to form the higher order trimers. |
| >PRK13308 ureC urease subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.6e-28 Score=249.72 Aligned_cols=333 Identities=19% Similarity=0.204 Sum_probs=205.1
Q ss_pred CCccEEEEcCeEEeCCCCCCeeeEEEEECCEEEEecChHHHHh--------hccCCCeEEeCCCCeeecccccccccccc
Q 008063 43 LEADLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQ--------LAADGTNVLNLQGKVVVPGFIDSHVHFIP 114 (579)
Q Consensus 43 ~~~~~likn~~v~~~~~~~~~~~~v~I~~GkI~~Ig~~~~~~~--------~~~~~~~viD~~g~~V~PG~ID~H~H~~~ 114 (579)
...+++|+|++|+|+... ....+|.|+||||++|++..+... ..+.+.++||++|++|+|||||+|+|+..
T Consensus 66 ~~~DlVItNa~IIDp~~G-i~kaDIgIkDGrIaaIG~~~npd~~~gv~p~~~~g~~teVIDaeG~IVtPG~ID~HVH~~~ 144 (569)
T PRK13308 66 GALDFVLCNVTVIDPVLG-IVKGDIGIRDGRIVGIGKAGNPDIMDGVDPRLVVGPGTDVRPAEGLIATPGAIDVHVHFDS 144 (569)
T ss_pred CcCCEEEECeEEEcCCCC-eEEeEEEEECCEEEEecCCCCccccccccccccCCCCCeEEECCCCEEEeCEEEeeeCCCC
Confidence 467899999999997443 367799999999999997532110 01245689999999999999999999843
Q ss_pred cCccccccccCCCCCHHHHHHHHHHHHHcCCCCCeEEEeCCCCCCCCCCCCChHHhhhhCCCCeEEEEeCCCchhhhcHH
Q 008063 115 GGLQMARVKLRGVSHKDEFVRRVKEAVKNSKKGSWILGGGWNNDLWGGDLPMASWIDDITPHNPVWLSRMDGHMGLANSV 194 (579)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~p~~~~ld~~~~~~p~~~~~~~~~~~~~n~~ 194 (579)
++
T Consensus 145 Pg------------------------------------------------------------------------------ 146 (569)
T PRK13308 145 AQ------------------------------------------------------------------------------ 146 (569)
T ss_pred cc------------------------------------------------------------------------------
Confidence 21
Q ss_pred HHHHcCCCCCCCCCCCCeEEeCCCCCcCEEEhHhHHHHhcccCCCCCHHHHHHHHHHHHHHHHhcCccEEEeCCcCCCCC
Q 008063 195 ALQLVGITNLSEDPNGGTIMKTSSGEPTGLLIDAAMKLILPWIPEVSVDERREALLRASNLALSRGVTTVVDFGRYYPGE 274 (579)
Q Consensus 195 ~~~~~g~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Git~v~~~~~~~~~~ 274 (579)
..+.++..|+||+.+++.+. ..
T Consensus 147 ---------------------------------------------------------~~~aALagGVTTVi~gg~gP-t~ 168 (569)
T PRK13308 147 ---------------------------------------------------------LVDHALASGITTMLGGGLGP-TV 168 (569)
T ss_pred ---------------------------------------------------------HHHHHHcCCCcEEecCCcCC-CC
Confidence 12568999999999874332 11
Q ss_pred cc-ccchHHHHHHHHHHhhcCCCeeEEEEccCccc--hhhHHHHHHhcCCCCCCceEEceEEEEEcCccCCCcccccCCC
Q 008063 275 SV-QLSWEDFADVYQWASYSEKMKIRVCLFFPLET--WSSLADLINKTGHVLSDWVYLGGVKAFADGSLGSNSALFHEPY 351 (579)
Q Consensus 275 ~~-~~~~~~~~~~~~~~~~~~~~~i~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~g~k~~~dg~~~~~~~~~~~~~ 351 (579)
.+ ......+...++... ..++++.++..... ..+..+..+. ...++|.. +.+
T Consensus 169 p~~t~g~~~i~~~l~aa~---~~pvN~g~~gkG~~s~~aeL~eli~a---------GA~GfKi~-------------ed~ 223 (569)
T PRK13308 169 GIDSGGPFNTGRMLQAAE---AWPVNFGFLGRGNSSKPAALIEQVEA---------GACGLKIH-------------EDW 223 (569)
T ss_pred CCCCCCHHHHHHHHHHHh---cCCccEEEEcCCcccCHHHHHHHHHC---------CCCEEeec-------------CCC
Confidence 11 112222333333332 23566665532211 2222222111 01123322 111
Q ss_pred CCCCCCCcccCCCHHHHHHHHHHHHHCCCeEEEEecchH---HHHHHHHHHHHHHHhcCCCCCCceEeeccCCC----hh
Q 008063 352 ADEPHNYGLQVMELESLLSMTMASDKSGLQVAIHAIGDR---ANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLA----SG 424 (579)
Q Consensus 352 ~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~i~iH~~g~~---~~~~~~~~~~~~~~~~~~~~~~~~i~H~~~~~----~~ 424 (579)
..+++.+.+.++.|+++++++.+|+..-. -.+..+++ ..+...++.|..... ++
T Consensus 224 ----------g~t~~~i~~aL~~A~~~dv~VaiHadtlne~g~~E~t~~a---------~~gr~iH~~H~egaggghapd 284 (569)
T PRK13308 224 ----------GAMPAAIDTCLEVADEYDFQVQLHTDTLNESGFVEDTLAA---------IGGRTIHMYHTEGAGGGHAPD 284 (569)
T ss_pred ----------CCCHHHHHHHHHHHHhcCCEEEEeCCCcCcchHHHHHHHH---------hcCCeEEEEeccCCccCchhH
Confidence 14678999999999999999999997422 22222222 234567778876432 34
Q ss_pred hHHHHhhCCcEEEecccccc------------------------cchhHHHHhhChhhhhhhhhhHHHHHHCCCeeeecC
Q 008063 425 TAARFGDQGIVASMQPQHLL------------------------DDADSARKKLGVDRAERESYLFQSLLANNALLALGS 480 (579)
Q Consensus 425 ~~~~~~~~~i~~~~~p~~~~------------------------~~~~~~~~~l~~~~~~~~~~~l~~l~~~Gi~v~~gs 480 (579)
.++.....++-.+.+..... ++....++++. . +....-..|++.|+..+++|
T Consensus 285 ~l~~~~~~n~lp~stnpt~p~t~nt~~e~~dm~m~~h~l~~~~~~d~afa~srir---~-~ti~ae~~l~d~g~~s~~~s 360 (569)
T PRK13308 285 IIRVVGEPHCLPSSTNPTNPYTVNTFDEHLDMTMVCHHLNPDVPEDVAFAESRIR---A-QTIAAEDVLHDIGAISMLGS 360 (569)
T ss_pred HHHHhCCCCccCCCCCCCCCCccCchhhhcCeEEEecCCCCCCcchhhhhhhhcc---c-eeeccCchhhcCCcEEEEec
Confidence 44444444443332211111 12222222222 2 44455567889999999999
Q ss_pred CCCCCC------CCHHHHHHHHHcccCCCCCCCCCCCCCCCHHH-----------HHHHHcHHHHHhcccCCccccccCC
Q 008063 481 DWPVAD------INPLCAIRTAMKRIPPGWDNAWIPSERISLTD-----------ALIAHTLSAARACFLENDVGSLSPG 543 (579)
Q Consensus 481 D~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~-----------al~~~T~npA~~lgl~~~~G~I~~G 543 (579)
|+.... ...|+....+.. +...|+.++ .|+++|.|||+++|+++.+|+|++|
T Consensus 361 ds~~mgr~~e~i~r~~q~a~~~~~-----------~~g~l~~~~~~~~dn~rv~r~L~~~T~npA~alGi~~~vGsLe~G 429 (569)
T PRK13308 361 DSQGMGRIAEVIARTWQLASKMKD-----------QRGPLPEDRGTFADNARIKRYIAKYTINPAITFGIDDHIGSLEPG 429 (569)
T ss_pred chHHHhHHHHHHHHHHHHHHHHhh-----------cCCCCCcccccCCchhhhhHHHHHHhHHHHHHcCCCCCceeeCCC
Confidence 985443 123333333322 112244433 5999999999999999999999999
Q ss_pred CcccEEEeCCCCCCChhhccCCeEEEEEECCEEeC
Q 008063 544 KIADFVILSTSSWEDFAAEVSASIEATYVSGVQAY 578 (579)
Q Consensus 544 ~~ADlvvld~~~~~~~~~~~~~~v~~v~v~G~~v~ 578 (579)
|.||||+|+.++|. .++..||++|+++|
T Consensus 430 k~ADLVv~d~d~fg-------v~p~~ti~~G~iv~ 457 (569)
T PRK13308 430 KLADIVLWRPAFFG-------IKPELVIKGGFPAW 457 (569)
T ss_pred CcCCEEEECCcccC-------CCeeEEEECCEEEE
Confidence 99999999988764 26889999999987
|
|
| >PRK09059 dihydroorotase; Validated | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.6e-27 Score=248.36 Aligned_cols=367 Identities=19% Similarity=0.218 Sum_probs=221.5
Q ss_pred ccEEEEcCeEEeCCCCCCeeeEEEEECCEEEEecChHHHHhhccCCCeEEeCCCCeeecccccccccccccCcccccccc
Q 008063 45 ADLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHFIPGGLQMARVKL 124 (579)
Q Consensus 45 ~~~likn~~v~~~~~~~~~~~~v~I~~GkI~~Ig~~~~~~~~~~~~~~viD~~g~~V~PG~ID~H~H~~~~~~~~~~~~~ 124 (579)
.+++|+|++|+++.+.....++|+|+||||++|++..+... .+.+.++||++|++|+|||||+|+|++..+.
T Consensus 3 ~~~~i~n~~v~~~~~~~~~~~~v~I~~G~I~~i~~~~~~~~-~~~~~~viDa~G~~v~PG~ID~HvH~~~~~~------- 74 (429)
T PRK09059 3 RPILLANARIIDPSRGLDEIGTVLIEDGVIVAAGKGAGNQG-APEGAEIVDCAGKAVAPGLVDARVFVGEPGA------- 74 (429)
T ss_pred cCEEEEeeEEECCCCCcccceEEEEECCEEEEecCcccccc-CCCCCeEEECCCCEEeccEEecccccCCCCc-------
Confidence 46899999999987764456899999999999986432100 0235689999999999999999999843210
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCCCeEEEeCCCCCCCCCCCCChHHhhhhCCCCeEEEEeCCCchhhhcHHHHHHcCCCCC
Q 008063 125 RGVSHKDEFVRRVKEAVKNSKKGSWILGGGWNNDLWGGDLPMASWIDDITPHNPVWLSRMDGHMGLANSVALQLVGITNL 204 (579)
Q Consensus 125 ~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~p~~~~ld~~~~~~p~~~~~~~~~~~~~n~~~~~~~g~~~~ 204 (579)
T Consensus 75 -------------------------------------------------------------------------------- 74 (429)
T PRK09059 75 -------------------------------------------------------------------------------- 74 (429)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCeEEeCCCCCcCEEEhHhHHHHhcccCCCCCHHHHHHHHHHHHHHHHhcCccEEEeCCcCCCCCccccchHHHH
Q 008063 205 SEDPNGGTIMKTSSGEPTGLLIDAAMKLILPWIPEVSVDERREALLRASNLALSRGVTTVVDFGRYYPGESVQLSWEDFA 284 (579)
Q Consensus 205 ~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Git~v~~~~~~~~~~~~~~~~~~~~ 284 (579)
+..+.+....+.+.+.|+|++.++....+ +..+.+.+.
T Consensus 75 ---------------------------------------~~~e~~~~~s~aa~~gGvTtv~~~p~~~p---~~~~~~~~~ 112 (429)
T PRK09059 75 ---------------------------------------EHRETIASASRAAAAGGVTSIIMMPDTDP---VIDDVALVE 112 (429)
T ss_pred ---------------------------------------hhhhhHHHHHHHHHhCCcEEEEeccCCCC---CCCCHHHHH
Confidence 01223445667789999999999864322 222222233
Q ss_pred HHHHHHhhcCCCeeEEEEccCcc---chhhHHHHHHhcCCCCCCceEEceEEEEEcCccCCCcccccCCCCCCCCCCccc
Q 008063 285 DVYQWASYSEKMKIRVCLFFPLE---TWSSLADLINKTGHVLSDWVYLGGVKAFADGSLGSNSALFHEPYADEPHNYGLQ 361 (579)
Q Consensus 285 ~~~~~~~~~~~~~i~v~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~k~~~dg~~~~~~~~~~~~~~~~~~~~~~~ 361 (579)
...+.+... ..+++..+.... ......+.... ...|++.+.++. ..
T Consensus 113 ~~~~~~~~~--~~vd~~~~~~~~~~~~~~~l~e~~~l---------~~~Gv~~f~~~~--------------------~~ 161 (429)
T PRK09059 113 FVKRTARDT--AIVNIHPAAAITKGLAGEEMTEFGLL---------RAAGAVAFTDGR--------------------RS 161 (429)
T ss_pred HHHHHhccc--CcccEEEEeEEecCCCCcchHHHHHH---------HhcCcEEEecCC--------------------cc
Confidence 333232222 234444332221 11111111110 011333332210 11
Q ss_pred CCCHHHHHHHHHHHHHCCCeEEEEecchHHHH---------------------HHHHHHHHHHHhcCCCCCCceEeeccC
Q 008063 362 VMELESLLSMTMASDKSGLQVAIHAIGDRAND---------------------LVLDMYKSVVVTTGKRDQRFRIEHAQH 420 (579)
Q Consensus 362 ~~~~~~l~~~~~~a~~~g~~i~iH~~g~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~i~H~~~ 420 (579)
..+...+.+.++.+++.|.++.+||....-.+ ....+..+...-.-..+.+.++.|...
T Consensus 162 ~~~~~~l~~~~~~~~~~~~~v~~H~E~~~l~~~~~~~~~~~~~~~~~~~rP~~aE~~av~r~~~la~~~~~~~hi~hvs~ 241 (429)
T PRK09059 162 VANTQVMRRALTYARDFDAVIVHETRDPDLGGNGVMNEGLFASWLGLSGIPREAEVIPLERDLRLAALTRGRYHAAQISC 241 (429)
T ss_pred cCCHHHHHHHHHHHHhcCCEEEEecCChhhhcCCCcCCcHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHCCcEEEEecCC
Confidence 13556788999999999999999986332100 001111111111112345788888876
Q ss_pred CCh-hhHHHHhhCC--cEEEecccccccchhHH------HHhhChhhhhhhhhhHHHHHHCCCeeeecCCCCCCCC-C--
Q 008063 421 LAS-GTAARFGDQG--IVASMQPQHLLDDADSA------RKKLGVDRAERESYLFQSLLANNALLALGSDWPVADI-N-- 488 (579)
Q Consensus 421 ~~~-~~~~~~~~~~--i~~~~~p~~~~~~~~~~------~~~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD~~~~~~-~-- 488 (579)
... +.+++.++.| +++.+||++...+.+.+ .+..+|.|..+....+.+.+..|....++||...... .
T Consensus 242 ~~~~~~i~~ak~~g~~vt~ev~phhL~l~~~~~~~~~~~~kvnPPLR~~~d~~~L~~~l~~g~id~i~sDh~p~~~~~K~ 321 (429)
T PRK09059 242 AESAEALRRAKDRGLKVTAGVSINHLSLNENDIGEYRTFFKLSPPLRTEDDRVAMVEAVASGTIDIIVSSHDPQDVDTKR 321 (429)
T ss_pred HHHHHHHHHHHHCCCCEEEeecHHHHhccHHHHhccCCccEEcCCCCCHHHHHHHHHHHHcCCCcEEEeCCCCCCHHHCc
Confidence 433 3444445555 78899999987665543 2344555655666677788888998899999754320 0
Q ss_pred -HHH-------HHHHHHcccCCCCCCCCCCCCCCCHHHHHHHHcHHHHHhcccCCccccccCCCcccEEEeCCCC-----
Q 008063 489 -PLC-------AIRTAMKRIPPGWDNAWIPSERISLTDALIAHTLSAARACFLENDVGSLSPGKIADFVILSTSS----- 555 (579)
Q Consensus 489 -~~~-------~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~npA~~lgl~~~~G~I~~G~~ADlvvld~~~----- 555 (579)
++. .+..++.... .+..+.+++++++++++|.|||+++|++ .|+|++|+.||||++|.+-
T Consensus 322 ~~~~~~~~G~~gle~~l~~~~-----~~v~~~~l~l~~~~~~~s~nPA~~~gl~--~G~l~~G~~ADlvl~d~~~~~~v~ 394 (429)
T PRK09059 322 LPFSEAAAGAIGLETLLAAAL-----RLYHNGEVPLLRLIEALSTRPAEIFGLP--AGTLKPGAPADIIVIDLDEPWVVD 394 (429)
T ss_pred CChhhCCCCcccHHHHHHHHH-----HHHHcCCCCHHHHHHHHhHHHHHHhCCC--cCcccCCCcCCEEEECCCCCEEEC
Confidence 111 1111111000 0012446899999999999999999995 4999999999999999753
Q ss_pred ---------CCChhhc-cCCeEEEEEECCEEeCC
Q 008063 556 ---------WEDFAAE-VSASIEATYVSGVQAYP 579 (579)
Q Consensus 556 ---------~~~~~~~-~~~~v~~v~v~G~~v~~ 579 (579)
+++++.. ...+|..||++|++||.
T Consensus 395 ~~~~~s~~~~sPf~G~~l~G~v~~ti~~G~~v~~ 428 (429)
T PRK09059 395 PEDLKSRSKNTPFEEARFQGRVVRTIVAGKTVYE 428 (429)
T ss_pred cccCccCCCCCCCCCCEEeeEEEEEEECCEEEee
Confidence 1122221 16699999999999974
|
|
| >PRK09236 dihydroorotase; Reviewed | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.5e-27 Score=249.94 Aligned_cols=157 Identities=15% Similarity=0.221 Sum_probs=100.7
Q ss_pred CCCceEeeccCCChhhHHHHh---h--CCcEEEecccccccchhHHHH------hhChhhhhhhhhhHHHHHHCCCeeee
Q 008063 410 DQRFRIEHAQHLASGTAARFG---D--QGIVASMQPQHLLDDADSARK------KLGVDRAERESYLFQSLLANNALLAL 478 (579)
Q Consensus 410 ~~~~~i~H~~~~~~~~~~~~~---~--~~i~~~~~p~~~~~~~~~~~~------~l~~~~~~~~~~~l~~l~~~Gi~v~~ 478 (579)
+.+.++.|... .+.++.++ . .++++.+||++...+.+.+.. ..++.|..+...++.+++++|+++++
T Consensus 229 ~~~~hi~h~st--~~~~~~i~~~~~~g~~vt~e~~~H~l~l~~~~~~~~~~~~~~~Pplr~~~~~~~l~~~l~~G~i~~i 306 (444)
T PRK09236 229 GTRLHVLHIST--AKELSLFENGPLAEKRITAEVCVHHLWFDDSDYARLGNLIKCNPAIKTASDREALRQALADDRIDVI 306 (444)
T ss_pred CCCEEEEeCCC--HHHHHHHHHHHHCCCCEEEEEchhhhhcCHHHHhccCceEEECCCCCCHHHHHHHHHHHhCCCCcEE
Confidence 34556666653 33333222 2 245667777776655544322 12233333566789999999999999
Q ss_pred cCCCCCCCCC--------------HHHHH-HHHHcccCCCCCCCCCCCCCCCHHHHHHHHcHHHHHhcccCCccccccCC
Q 008063 479 GSDWPVADIN--------------PLCAI-RTAMKRIPPGWDNAWIPSERISLTDALIAHTLSAARACFLENDVGSLSPG 543 (579)
Q Consensus 479 gsD~~~~~~~--------------~~~~~-~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~npA~~lgl~~~~G~I~~G 543 (579)
|||++..... .++.+ ...+.. ..+.+++++++++++|.|||++||+++ +|+|++|
T Consensus 307 gtDh~p~~~~~k~~~~~~~~~G~~~~e~~l~~l~~~---------v~~~~~~~~~~~~~~t~~pA~~lgl~~-~G~l~~G 376 (444)
T PRK09236 307 ATDHAPHTWEEKQGPYFQAPSGLPLVQHALPALLEL---------VHEGKLSLEKVVEKTSHAPAILFDIKE-RGFIREG 376 (444)
T ss_pred ECCCCCCCHHHhcCCcccCCCCcccHHHHHHHHHHH---------HHhcCCCHHHHHHHHHHhHHHhcCCCC-CCccccC
Confidence 9998644211 11111 111110 023469999999999999999999964 7999999
Q ss_pred CcccEEEeCCC-CCC-Chhhc-------------cCCeEEEEEECCEEeC
Q 008063 544 KIADFVILSTS-SWE-DFAAE-------------VSASIEATYVSGVQAY 578 (579)
Q Consensus 544 ~~ADlvvld~~-~~~-~~~~~-------------~~~~v~~v~v~G~~v~ 578 (579)
+.|||||+|.+ ++. +..++ ...+|..||++|++||
T Consensus 377 ~~ADlvi~d~~~~~~~~~~~~~s~~~~sp~~g~~~~g~v~~t~v~G~~v~ 426 (444)
T PRK09236 377 YWADLVLVDLNSPWTVTKENILYKCGWSPFEGRTFRSRVATTFVNGQLVY 426 (444)
T ss_pred CcCCEEEEcCCCCEEEchHHhcccCCCCCCCCCEEeeeEEEEEECCEEEE
Confidence 99999999965 322 21111 1458999999999987
|
|
| >PRK06846 putative deaminase; Validated | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.3e-27 Score=247.84 Aligned_cols=187 Identities=18% Similarity=0.087 Sum_probs=136.2
Q ss_pred CCHHHHHHHHHHHHHCCCeEEEEecchH-HHHHHHHHHHHHHHhcCCCCCCceEeeccCC---ChhhHH----HHhhCCc
Q 008063 363 MELESLLSMTMASDKSGLQVAIHAIGDR-ANDLVLDMYKSVVVTTGKRDQRFRIEHAQHL---ASGTAA----RFGDQGI 434 (579)
Q Consensus 363 ~~~~~l~~~~~~a~~~g~~i~iH~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~i~H~~~~---~~~~~~----~~~~~~i 434 (579)
.+++.+.++++.|+++|+++++|+.... +....++...+...+.+..+ +..+.|+..+ ++++++ ++++.|+
T Consensus 203 ~~~~~l~~~~~lA~~~g~~v~~Hv~e~~~~~~~~~~~~~~~~~~~gl~~-~v~~~H~~~l~~~~~~e~~~li~~la~~g~ 281 (410)
T PRK06846 203 AIEKSLDTMFQIAVDFNKGVDIHLHDTGPLGVATIKYLVETTEEAQWKG-KVTISHAFALGDLNEEEVEELAERLAAQGI 281 (410)
T ss_pred CHHHHHHHHHHHHHHhCCCcEEEECCCCChhHHHHHHHHHHHHHhCCCC-CEEEEecchhhcCCHHHHHHHHHHHHHcCC
Confidence 5678999999999999999999987432 22333333344444556555 8999999864 566644 6899999
Q ss_pred EEEecccccccchhHHHHhhChhhhhhhhhhHHHHHHCCCeeeecCCCCCC------CCCHHHHHHHHHcccCCCCCCCC
Q 008063 435 VASMQPQHLLDDADSARKKLGVDRAERESYLFQSLLANNALLALGSDWPVA------DINPLCAIRTAMKRIPPGWDNAW 508 (579)
Q Consensus 435 ~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD~~~~------~~~~~~~~~~~~~~~~~~~~~~~ 508 (579)
.+++++.. + ...+|++.|.++|+++++|||++.. ..+++.+++.+......
T Consensus 282 ~v~~~~~~------------~-----~g~~p~~~l~~~Gv~v~lGtD~~~~~~~p~~~~d~~~~~~~~~~~~~~------ 338 (410)
T PRK06846 282 SITSTVPI------------G-----RLHMPIPLLHDKGVKVSLGTDSVIDHWSPFGTGDMLEKANLLAELYRW------ 338 (410)
T ss_pred eEEEeCCC------------C-----CCCCCHHHHHhCCCeEEEecCCCCCCCcCCCCCCHHHHHHHHHHHhcC------
Confidence 88765331 1 4466899999999999999997632 24688888766543211
Q ss_pred CCCCCCCHHHHHHHHcHHHHHhcccCCccccccCCCcccEEEeCCCCCC-ChhhccCCeEEEEEECCEEeC
Q 008063 509 IPSERISLTDALIAHTLSAARACFLENDVGSLSPGKIADFVILSTSSWE-DFAAEVSASIEATYVSGVQAY 578 (579)
Q Consensus 509 ~~~~~ls~~~al~~~T~npA~~lgl~~~~G~I~~G~~ADlvvld~~~~~-~~~~~~~~~v~~v~v~G~~v~ 578 (579)
... -...++++++|.+ |+.++.++.+|+|+|||.|||||+|.++.. .+. ...++..||++|++||
T Consensus 339 ~~~--~~~~~~l~~~T~~-a~~l~~~~~~G~l~~G~~ADlvlld~~~~~~~~~--~~~~v~~v~~~G~~v~ 404 (410)
T PRK06846 339 SDE--RSLSRSLALATGG-VLPLNDEGERVWPKVGDEASFVLVDASCSAEAVA--RQSPRTAVFHKGQLVA 404 (410)
T ss_pred CCH--HHHHHHHHHHcCC-ccccccCCCccCCCCCCcccEEEEeCCChHHHHH--hcCCceEEEECCEEEe
Confidence 111 2456899999988 566888777899999999999999987632 221 2358999999999997
|
|
| >TIGR02318 phosphono_phnM phosphonate metabolism protein PhnM | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.8e-27 Score=245.36 Aligned_cols=168 Identities=23% Similarity=0.216 Sum_probs=119.7
Q ss_pred CHHHHHHHHHHHHHCCCeEEEEec-chHHHHHHHHHHHHHHHhcCCCCCCceEeeccCCChhhHHHHhhCCcEEEeccc-
Q 008063 364 ELESLLSMTMASDKSGLQVAIHAI-GDRANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLASGTAARFGDQGIVASMQPQ- 441 (579)
Q Consensus 364 ~~~~l~~~~~~a~~~g~~i~iH~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~i~H~~~~~~~~~~~~~~~~i~~~~~p~- 441 (579)
..+.++++++.|++.|+++..|.. +...+.+..+ .| ...+.| .++.+..+.+.+.|+.+..+..
T Consensus 207 ~~e~i~~~v~~A~~~G~~v~sH~~~~~e~i~~a~~--------~G----v~~~E~--~~t~e~a~~~~~~G~~v~~~~p~ 272 (376)
T TIGR02318 207 GLANRSEIAALARARGIPLASHDDDTPEHVAEAHD--------LG----VTISEF--PTTLEAAKEARSLGMQILMGAPN 272 (376)
T ss_pred cHHHHHHHHHHHHHCCCeEEEecCCCHHHHHHHHH--------CC----CChhcc--CCCHHHHHHHHHcCCeEEECCcc
Confidence 578899999999999999999994 3333332221 12 122333 3688889999999999877632
Q ss_pred ccccchhHHHHhhChhhhhhhhhhHHHHHHCCCeeeecCCCCCCCCCHHHHHHHHHcccCCCCCCCCCCCCCCCHHHHHH
Q 008063 442 HLLDDADSARKKLGVDRAERESYLFQSLLANNALLALGSDWPVADINPLCAIRTAMKRIPPGWDNAWIPSERISLTDALI 521 (579)
Q Consensus 442 ~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~ 521 (579)
.... +.. ....++..+++.|+.++++||.. +.+.+..+..... ...++++.++++
T Consensus 273 ~~r~---------~~~---~~~~~l~~~~~~G~~~~l~SD~~--p~~~l~~~~~~~~-----------~~~gl~~~~al~ 327 (376)
T TIGR02318 273 IVRG---------GSH---SGNLSARELAHEGLLDVLASDYV--PASLLLAAFQLAD-----------DVEGIPLPQAVK 327 (376)
T ss_pred cccc---------ccc---cchHHHHHHHHCCCcEEEEcCCC--cHHHHHHHHHHHH-----------hhcCCCHHHHHH
Confidence 2110 000 12346789999999999999983 2333333322211 123589999999
Q ss_pred HHcHHHHHhcccCCccccccCCCcccEEEeCCCCCCChhhccCCeEEEEEECCEEeC
Q 008063 522 AHTLSAARACFLENDVGSLSPGKIADFVILSTSSWEDFAAEVSASIEATYVSGVQAY 578 (579)
Q Consensus 522 ~~T~npA~~lgl~~~~G~I~~G~~ADlvvld~~~~~~~~~~~~~~v~~v~v~G~~v~ 578 (579)
++|.|||+.+|+++ +|+|++|+.|||+++|... . ...+..||++|++||
T Consensus 328 ~~T~npA~~lgl~~-~G~I~~G~~ADlvvvd~~~--~-----~~~v~~v~~~G~~v~ 376 (376)
T TIGR02318 328 MVTKNPARAVGLSD-RGSIAPGKRADLVRVHRVD--G-----VPRIRAVWRAGRRVY 376 (376)
T ss_pred HHhHHHHHHcCCCC-CCcCCCCCcccEEEEcCCC--C-----CccceEEEECCEEeC
Confidence 99999999999974 7999999999999999742 1 237899999999987
|
This family consists of proteins from in the PhnM family. PhnM is a a protein associated with phosphonate utilization in a number of bacterial species. In Pseudomonas stutzeri WM88, a protein that is part of a system for the oxidation of phosphites (another form of reduced phosphorous compound) scores between trusted and noise cutoffs. |
| >PLN02303 urease | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.5e-27 Score=252.59 Aligned_cols=196 Identities=16% Similarity=0.161 Sum_probs=125.9
Q ss_pred CCHHHHHHHHHHHHHCCCeEEEEecchHH---HHHHHHHHHH----HHHhcCCCCCCceEeeccCCChhhHHHHhhCCcE
Q 008063 363 MELESLLSMTMASDKSGLQVAIHAIGDRA---NDLVLDMYKS----VVVTTGKRDQRFRIEHAQHLASGTAARFGDQGIV 435 (579)
Q Consensus 363 ~~~~~l~~~~~~a~~~g~~i~iH~~g~~~---~~~~~~~~~~----~~~~~~~~~~~~~i~H~~~~~~~~~~~~~~~~i~ 435 (579)
.+++.+.+.++.|+++|+++++|+....+ .+..++.+.. .....|..+. | .++.++.....++-
T Consensus 494 vTpelL~raLe~AkelGVpVaIHAEdLnE~G~vE~t~~a~G~RpIh~~h~~Ga~gg-----h----apdi~~~~~~~nvl 564 (837)
T PLN02303 494 TTPAAIDNCLDVAEEYDIQVTIHTDTLNESGCVEHSIAAFKGRTIHTYHSEGAGGG-----H----APDIIKVCGVKNVL 564 (837)
T ss_pred CCHHHHHHHHHHHHHcCCEEEEecCcccccchHHHHHHHHCCChHHHHHhcCCCCC-----C----CcHHHHhcCCCCcc
Confidence 57889999999999999999999764322 4444444432 1222222211 1 12222222222221
Q ss_pred EE---------------------eccc---ccccchhHHHHhhChhhhhhhhhhHHHHHHCCCeeeecCCCCCCC-----
Q 008063 436 AS---------------------MQPQ---HLLDDADSARKKLGVDRAERESYLFQSLLANNALLALGSDWPVAD----- 486 (579)
Q Consensus 436 ~~---------------------~~p~---~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD~~~~~----- 486 (579)
.+ +|.+ ...++....++++.+ +....-..|++.|+..+++||+....
T Consensus 565 psstnpt~p~t~nt~~e~~dm~m~~h~l~~~~~edvafa~srir~----~tiaaed~l~d~G~~s~~~SDs~amgr~ge~ 640 (837)
T PLN02303 565 PSSTNPTRPYTKNTIDEHLDMLMVCHHLDKNIPEDVAFAESRIRA----ETIAAEDILHDMGAISIISSDSQAMGRIGEV 640 (837)
T ss_pred CCCCCCCCCCccCchhhhcCeEEeecCCCCCCcchhhhhhhhccc----hhhccchhhhccCCEEEEeccchhhCcccce
Confidence 11 1111 112233333333332 44556677899999999999987443
Q ss_pred -CCHHHHHHHHHcccCCCCCCCCCCCCCCCHHHHHHHHcHHHHHhcccCCccccccCCCcccEEEeCCCCCCChhhccCC
Q 008063 487 -INPLCAIRTAMKRIPPGWDNAWIPSERISLTDALIAHTLSAARACFLENDVGSLSPGKIADFVILSTSSWEDFAAEVSA 565 (579)
Q Consensus 487 -~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~npA~~lgl~~~~G~I~~G~~ADlvvld~~~~~~~~~~~~~ 565 (579)
...|+....+..... .........-..+.+++|+++|.|||+++|+++.+|+|++||.||||||+.++|. .
T Consensus 641 i~r~~q~A~k~~~~~g-~l~~~~~~~dn~rv~~aL~~~TiN~A~AlG~~~~vGSLe~GK~ADlVvw~~~~fg-------~ 712 (837)
T PLN02303 641 ITRTWQTAHKMKSQRG-ALEPRGADNDNFRIKRYIAKYTINPAIAHGMSHFVGSVEVGKLADLVLWKPAFFG-------A 712 (837)
T ss_pred eeehHHHHHHHHHhcC-CCCCccccccccCHHHHHHHHhHHHHHHCCcccCceeeCCCcccCEEEecccccC-------C
Confidence 678888777743211 1100111234578899999999999999999999999999999999999988764 3
Q ss_pred eEEEEEECCEEeCC
Q 008063 566 SIEATYVSGVQAYP 579 (579)
Q Consensus 566 ~v~~v~v~G~~v~~ 579 (579)
++..||++|++||.
T Consensus 713 ~~~~vi~~G~ivy~ 726 (837)
T PLN02303 713 KPEMVIKGGQIAWA 726 (837)
T ss_pred CeeEEEECCEEEEc
Confidence 78999999999984
|
|
| >PRK08044 allantoinase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.9e-26 Score=243.79 Aligned_cols=365 Identities=20% Similarity=0.225 Sum_probs=225.2
Q ss_pred ccEEEEcCeEEeCCCCCCeeeEEEEECCEEEEecChHHHHhhccCCCeEEeCCCCeeecccccccccccccCcccccccc
Q 008063 45 ADLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHFIPGGLQMARVKL 124 (579)
Q Consensus 45 ~~~likn~~v~~~~~~~~~~~~v~I~~GkI~~Ig~~~~~~~~~~~~~~viD~~g~~V~PG~ID~H~H~~~~~~~~~~~~~ 124 (579)
++++|+|++|++.++. ..++|+|+||+|++|++..+ .+.++||++|++|+|||||+|+|+..++.
T Consensus 3 ~~~~i~n~~vi~~~~~--~~~~i~I~dg~I~~i~~~~~------~~~~~iD~~G~~v~Pg~iD~h~h~~~~~~------- 67 (449)
T PRK08044 3 FDLIIKNGTVILENEA--RVVDIAVKGGKIAAIGQDLG------DAKEVMDASGLVVSPGMVDAHTHISEPGR------- 67 (449)
T ss_pred ceEEEECcEEEcCCCC--EEEEEEEECCEEEEecCCCC------CCCeEEECCCCEEcCCeeccccccCCCCc-------
Confidence 4789999999986543 45799999999999986421 35689999999999999999999854321
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCCCeEEEeCCCCCCCCCCCCChHHhhhhCCCCeEEEEeCCCchhhhcHHHHHHcCCCCC
Q 008063 125 RGVSHKDEFVRRVKEAVKNSKKGSWILGGGWNNDLWGGDLPMASWIDDITPHNPVWLSRMDGHMGLANSVALQLVGITNL 204 (579)
Q Consensus 125 ~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~p~~~~ld~~~~~~p~~~~~~~~~~~~~n~~~~~~~g~~~~ 204 (579)
T Consensus 68 -------------------------------------------------------------------------------- 67 (449)
T PRK08044 68 -------------------------------------------------------------------------------- 67 (449)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCeEEeCCCCCcCEEEhHhHHHHhcccCCCCCHHHHHHHHHHHHHHHHhcCccEEEeCCcCCCCCccccchHHHH
Q 008063 205 SEDPNGGTIMKTSSGEPTGLLIDAAMKLILPWIPEVSVDERREALLRASNLALSRGVTTVVDFGRYYPGESVQLSWEDFA 284 (579)
Q Consensus 205 ~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Git~v~~~~~~~~~~~~~~~~~~~~ 284 (579)
...+.+....+.+.+.|+|++.+++.. ..|.....+.+
T Consensus 68 ---------------------------------------~~~e~~~~~~~aa~~gGvTtv~d~~~~---~~p~~~~~~~~ 105 (449)
T PRK08044 68 ---------------------------------------SHWEGYETGTRAAAKGGITTMIEMPLN---QLPATVDRASI 105 (449)
T ss_pred ---------------------------------------cccccHHHHHHHHHhCCceEEECCccC---CCCCCCcHHHH
Confidence 002244567788999999999998621 11222222333
Q ss_pred H-HHHHHhhcCCCeeEEEEccCc--cchhhHHHHHHhcCCCCCCceEEceEEEEEcCccCCCcccccCCCCCCCCCCccc
Q 008063 285 D-VYQWASYSEKMKIRVCLFFPL--ETWSSLADLINKTGHVLSDWVYLGGVKAFADGSLGSNSALFHEPYADEPHNYGLQ 361 (579)
Q Consensus 285 ~-~~~~~~~~~~~~i~v~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~k~~~dg~~~~~~~~~~~~~~~~~~~~~~~ 361 (579)
+ ..+..+ ....+++..+... .+..+..+... ....++|++.... .+ .....+..
T Consensus 106 ~~~~~~~~--~~s~vd~~~~~~~~~~~~~ei~~l~~---------~gv~~fk~~~~~~---------~~---~~~~~~~~ 162 (449)
T PRK08044 106 ELKFDAAK--GKLTIDAAQLGGLVSYNLDRLHELDE---------VGVVGFKCFVATC---------GD---RGIDNDFR 162 (449)
T ss_pred HHHHHHhc--cCCeeeEEEEeeeCCCCHHHHHHHHH---------cCceEEEEEeccc---------Cc---ccccCCcc
Confidence 3 333222 2333444433222 12223323221 1133566553100 00 00000112
Q ss_pred CCCHHHHHHHHHHHHHCCCeEEEEecchHHHHHHH----H--------------------HHHHHHHhcCCCCCCceEee
Q 008063 362 VMELESLLSMTMASDKSGLQVAIHAIGDRANDLVL----D--------------------MYKSVVVTTGKRDQRFRIEH 417 (579)
Q Consensus 362 ~~~~~~l~~~~~~a~~~g~~i~iH~~g~~~~~~~~----~--------------------~~~~~~~~~~~~~~~~~i~H 417 (579)
..+...+.+.++.+++.|.++.+|+....-.+... + ...+.....-..+.+.++.|
T Consensus 163 ~~~~~~l~~~~~~~~~~~~~v~~H~E~~~l~~~~~~~~~~~G~~~~~~~~~~~P~~~E~~~v~r~~~lA~~~g~~vhi~H 242 (449)
T PRK08044 163 DVNDWQFYKGAQKLGELGQPVLVHCENALICDELGEEAKREGRVTAHDYVASRPVFTEVEAIRRVLYLAKVAGCRLHVCH 242 (449)
T ss_pred CcCHHHHHHHHHHHHhcCCEEEEecCCHHHHHHHHHHHHhcCCCChhhccccCCHHHHHHHHHHHHHHHHHhCCCEEEEe
Confidence 24567888899999999999999996432211110 0 01111111111245778888
Q ss_pred ccCCC-hhhHHHHhhCC--cEEEecccccccchhHHHH------hhChhhhhhhhhhHHHHHHCCCeeeecCCCCCCCC-
Q 008063 418 AQHLA-SGTAARFGDQG--IVASMQPQHLLDDADSARK------KLGVDRAERESYLFQSLLANNALLALGSDWPVADI- 487 (579)
Q Consensus 418 ~~~~~-~~~~~~~~~~~--i~~~~~p~~~~~~~~~~~~------~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD~~~~~~- 487 (579)
+.... -+.+.+.++.| +++.+||++...+.+.+.. ..+|.|..+....+.+.+..|.+.+++||....+.
T Consensus 243 iSt~~~~~~i~~ak~~G~~it~e~~~h~L~l~~~~~~~~~~~~k~~PPlr~~~d~~aL~~~l~~G~id~i~sDH~P~~~~ 322 (449)
T PRK08044 243 ISSPEGVEEVTRARQEGQDVTCESCPHYFVLDTDQFEEIGTLAKCSPPIRDLENQKGMWEKLFNGEIDCLVSDHSPCPPE 322 (449)
T ss_pred CCCHHHHHHHHHHHHCCCCEEEEcChhhhcccHHHhhCCCCcEEEcCCCCChHHHHHHHHHHhCCCceEEEcCCCCCChH
Confidence 87422 24444455554 7888999998866665432 33556655667778888899999999999765431
Q ss_pred ----CHHH----------HHHHHHcccCCCCCCCCCCCCCCCHHHHHHHHcHHHHHhcccCCccccccCCCcccEEEeCC
Q 008063 488 ----NPLC----------AIRTAMKRIPPGWDNAWIPSERISLTDALIAHTLSAARACFLENDVGSLSPGKIADFVILST 553 (579)
Q Consensus 488 ----~~~~----------~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~npA~~lgl~~~~G~I~~G~~ADlvvld~ 553 (579)
+.+. .+..++.. +..+.+++++++++++|.|||++||+++ +|+|++|+.|||+|+|.
T Consensus 323 ~K~~~~~~~~~g~~g~e~~l~~~~~~--------~v~~~~l~~~~~v~~~s~npA~~lgl~~-~G~i~~G~~ADlvi~d~ 393 (449)
T PRK08044 323 MKAGNIMEAWGGIAGLQNCMDVMFDE--------AVQKRGMSLPMFGKLMATNAADIFGLQQ-KGRIAPGKDADFVFIQP 393 (449)
T ss_pred HccCChhhCCCCceEHHHHHHHHHHH--------HHHcCCCCHHHHHHHHHHhHHHHhCCCC-CCcCCCCCccCEEEECC
Confidence 1110 11111110 1134569999999999999999999965 69999999999999997
Q ss_pred CC-CC-Chhhc-------------cCCeEEEEEECCEEeC
Q 008063 554 SS-WE-DFAAE-------------VSASIEATYVSGVQAY 578 (579)
Q Consensus 554 ~~-~~-~~~~~-------------~~~~v~~v~v~G~~v~ 578 (579)
+- |. ..+.+ ...+|..||++|++||
T Consensus 394 ~~~~~v~~~~~~s~~~~sp~~G~~l~G~v~~t~~~G~~v~ 433 (449)
T PRK08044 394 NSSYVLKNEDLEYRHKVSPYVGRTIGARITKTILRGDVIY 433 (449)
T ss_pred CCcEEECHHHccccCCCCCCCCCEEeeeEEEEEECCEEEE
Confidence 63 22 11111 1568999999999987
|
|
| >PRK07575 dihydroorotase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=8e-27 Score=246.30 Aligned_cols=358 Identities=21% Similarity=0.278 Sum_probs=212.6
Q ss_pred CccEEEEcCeEEeCCCCCCeeeEEEEECCEEEEecChHHHHhhccCCCeEEeCCCCeeecccccccccccccCccccccc
Q 008063 44 EADLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHFIPGGLQMARVK 123 (579)
Q Consensus 44 ~~~~likn~~v~~~~~~~~~~~~v~I~~GkI~~Ig~~~~~~~~~~~~~~viD~~g~~V~PG~ID~H~H~~~~~~~~~~~~ 123 (579)
+|+++|+|++|+++.+. ...++|+|+||||++|++..+. +.+.++||++|++|+|||||+|+|+...+.
T Consensus 2 ~~~~~i~~~~i~~~~~~-~~~~~I~I~dg~I~~ig~~~~~----~~~~~vid~~g~~v~PG~ID~H~H~~~~~~------ 70 (438)
T PRK07575 2 MMSLLIRNARILLPSGE-LLLGDVLVEDGKIVAIAPEISA----TAVDTVIDAEGLTLLPGVIDPQVHFREPGL------ 70 (438)
T ss_pred cceEEEECCEEECCCCC-EEeeeEEEECCEEEEecCCCCC----CCCCeEEECCCCEEcccEEEeeeccCCCCC------
Confidence 35689999999987553 3567999999999999874321 123589999999999999999999743211
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCCCCeEEEeCCCCCCCCCCCCChHHhhhhCCCCeEEEEeCCCchhhhcHHHHHHcCCCC
Q 008063 124 LRGVSHKDEFVRRVKEAVKNSKKGSWILGGGWNNDLWGGDLPMASWIDDITPHNPVWLSRMDGHMGLANSVALQLVGITN 203 (579)
Q Consensus 124 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~p~~~~ld~~~~~~p~~~~~~~~~~~~~n~~~~~~~g~~~ 203 (579)
T Consensus 71 -------------------------------------------------------------------------------- 70 (438)
T PRK07575 71 -------------------------------------------------------------------------------- 70 (438)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCeEEeCCCCCcCEEEhHhHHHHhcccCCCCCHHHHHHHHHHHHHHHHhcCccEEEeCCcCCCCCccccchHHH
Q 008063 204 LSEDPNGGTIMKTSSGEPTGLLIDAAMKLILPWIPEVSVDERREALLRASNLALSRGVTTVVDFGRYYPGESVQLSWEDF 283 (579)
Q Consensus 204 ~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Git~v~~~~~~~~~~~~~~~~~~~ 283 (579)
...+.+....+.+.+.|+|++.++.... .+..+.+.+
T Consensus 71 ----------------------------------------~~~e~~~~~~~aa~~gGvTt~~dmp~~~---p~~~~~~~~ 107 (438)
T PRK07575 71 ----------------------------------------EHKEDLFTASRACAKGGVTSFLEMPNTK---PLTTTQAAL 107 (438)
T ss_pred ----------------------------------------cCcchHHHHHHHHHhCCEEEEEECCCCC---CCCCcHHHH
Confidence 0012334456678999999999986322 222333333
Q ss_pred HHHHHHHhhcCCCeeEEEEccCccchhhHHHHHHhcCCCCCCceEEceEEEEEcCccCCCcccccCCCCCCCCCCcccCC
Q 008063 284 ADVYQWASYSEKMKIRVCLFFPLETWSSLADLINKTGHVLSDWVYLGGVKAFADGSLGSNSALFHEPYADEPHNYGLQVM 363 (579)
Q Consensus 284 ~~~~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~k~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (579)
....+.+. ....+++.++..... ....+.... ....|++.+...... + ....
T Consensus 108 ~~~~~~a~--~~~~v~~~~~~~~~~-~~l~~l~~~--------~~~~g~~~f~~~~~~--------~---------~~~~ 159 (438)
T PRK07575 108 DDKLARAA--EKCVVNYGFFIGATP-DNLPELLTA--------NPTCGIKIFMGSSHG--------P---------LLVD 159 (438)
T ss_pred HHHHHHhc--cCcEEEEEEEccccc-cCHHHHHHh--------hCCeEEEEEEeeCCC--------C---------cccC
Confidence 33333332 234566555433221 112222111 112245554210000 0 0001
Q ss_pred CHHHHHHHHHHHHHCCCeEEEEecchHHHH--H--------------------HHHHHHHHHHhcCCCCCCceEeeccCC
Q 008063 364 ELESLLSMTMASDKSGLQVAIHAIGDRAND--L--------------------VLDMYKSVVVTTGKRDQRFRIEHAQHL 421 (579)
Q Consensus 364 ~~~~l~~~~~~a~~~g~~i~iH~~g~~~~~--~--------------------~~~~~~~~~~~~~~~~~~~~i~H~~~~ 421 (579)
+...+.+++ .+.+.++.+|+....-+. . ...++.+...-.-..+.++++.|..
T Consensus 160 ~~~~~~~~~---~~~~~~v~~h~e~~~l~~~~~~~~~g~~~~~~~~~~~p~~aE~~av~~~~~la~~~g~~lhi~HiS-- 234 (438)
T PRK07575 160 EEAALERIF---AEGTRLIAVHAEDQARIRARRAEFAGISDPADHSQIQDEEAALLATRLALKLSKKYQRRLHILHLS-- 234 (438)
T ss_pred cHHHHHHHH---HhCCCEEEEeCcChHHHHhhhHhhccCcCcccccccCcHHHHHHHHHHHHHHHHHHCCCEEEEECC--
Confidence 223334332 356788888875322000 0 0011111111111124578888887
Q ss_pred ChhhHHHHhh---CCcEEEecccccccchhHHHH------hhChhhhhhhhhhHHHHHHCCCeeeecCCCCCCCC-----
Q 008063 422 ASGTAARFGD---QGIVASMQPQHLLDDADSARK------KLGVDRAERESYLFQSLLANNALLALGSDWPVADI----- 487 (579)
Q Consensus 422 ~~~~~~~~~~---~~i~~~~~p~~~~~~~~~~~~------~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD~~~~~~----- 487 (579)
+.+.++.+++ ..+++.+||+|...+.+.+.. ..++.|..+...++.+++++|++++++||+.....
T Consensus 235 t~~~v~~i~~~k~~~vt~ev~phhL~l~~~~~~~~~~~~k~~PPLR~~~d~~~L~~~l~~G~id~i~sDh~p~~~~~k~~ 314 (438)
T PRK07575 235 TAIEAELLRQDKPSWVTAEVTPQHLLLNTDAYERIGTLAQMNPPLRSPEDNEALWQALRDGVIDFIATDHAPHTLEEKAQ 314 (438)
T ss_pred CHHHHHHHHHhcCCCEEEEEchhhheeCHHHHhCCCceEEEeCCCCCHHHHHHHHHHHhCCCCCEEecCCCCCCHHHccC
Confidence 4544544433 247888999997765555432 23556655677889999999999999999765431
Q ss_pred ------CH--HHHHH--HHHcccCCCCCCCCCCCCCCCHHHHHHHHcHHHHHhcccCCccccccCCCcccEEEeCCCC-C
Q 008063 488 ------NP--LCAIR--TAMKRIPPGWDNAWIPSERISLTDALIAHTLSAARACFLENDVGSLSPGKIADFVILSTSS-W 556 (579)
Q Consensus 488 ------~~--~~~~~--~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~npA~~lgl~~~~G~I~~G~~ADlvvld~~~-~ 556 (579)
.. ..++. ..+.. ..+.+++++++++++|.|||++||+++ +|+|++|+.|||||+|.+. +
T Consensus 315 ~~~~~~~G~~g~e~~l~~l~~~---------~~~~~lsl~~~~~~~s~npAk~lgl~~-~G~L~~G~~ADlvi~D~~~~~ 384 (438)
T PRK07575 315 PYPNSPSGMPGVETSLPLMLTA---------AMRGKCTVAQVVRWMSTAVARAYGIPN-KGRIAPGYDADLVLVDLNTYR 384 (438)
T ss_pred CcccCCCCcccHHHHHHHHHHH---------HhcCCCCHHHHHHHHhhhHHHHcCCCC-CCccCCCCcCCEEEEcCCCCE
Confidence 10 11111 11111 123469999999999999999999954 5999999999999999764 3
Q ss_pred C-Chhhc-------------cCCeEEEEEECCEEeC
Q 008063 557 E-DFAAE-------------VSASIEATYVSGVQAY 578 (579)
Q Consensus 557 ~-~~~~~-------------~~~~v~~v~v~G~~v~ 578 (579)
. ....+ ...++..||++|++||
T Consensus 385 ~v~~~~~~s~~~~sp~~g~~~~G~v~~tiv~G~~v~ 420 (438)
T PRK07575 385 PVRREELLTKCGWSPFEGWNLTGWPVTTIVGGQIVF 420 (438)
T ss_pred EEchHHccccCCCCCCCCCEEeeEEEEEEECCEEEE
Confidence 2 21111 1346899999999986
|
|
| >PRK09060 dihydroorotase; Validated | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.5e-26 Score=244.53 Aligned_cols=361 Identities=24% Similarity=0.293 Sum_probs=214.9
Q ss_pred CccEEEEcCeEEeCCCCCCeeeEEEEECCEEEEecChHHHHhhccCCCeEEeCCCCeeecccccccccccccCccccccc
Q 008063 44 EADLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHFIPGGLQMARVK 123 (579)
Q Consensus 44 ~~~~likn~~v~~~~~~~~~~~~v~I~~GkI~~Ig~~~~~~~~~~~~~~viD~~g~~V~PG~ID~H~H~~~~~~~~~~~~ 123 (579)
.++++|+|++|+++.+. ..++|+|+||||++|++..+ .++.++||++|++|+|||||+|+|+..++.
T Consensus 4 ~~d~~i~~~~v~~~~~~--~~~~i~i~~g~I~~i~~~~~-----~~~~~~iD~~G~~v~PG~ID~HvH~~~~~~------ 70 (444)
T PRK09060 4 TFDLILKGGTVVNPDGE--GRADIGIRDGRIAAIGDLSG-----ASAGEVIDCRGLHVLPGVIDSQVHFREPGL------ 70 (444)
T ss_pred cCcEEEECCEEECCCCC--eeeEEEEECCEEEEecCCCC-----CCCceEEECCCCEEccCEEeccccccCCCC------
Confidence 36789999999997653 45799999999999986432 134689999999999999999999753211
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCCCCeEEEeCCCCCCCCCCCCChHHhhhhCCCCeEEEEeCCCchhhhcHHHHHHcCCCC
Q 008063 124 LRGVSHKDEFVRRVKEAVKNSKKGSWILGGGWNNDLWGGDLPMASWIDDITPHNPVWLSRMDGHMGLANSVALQLVGITN 203 (579)
Q Consensus 124 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~p~~~~ld~~~~~~p~~~~~~~~~~~~~n~~~~~~~g~~~ 203 (579)
T Consensus 71 -------------------------------------------------------------------------------- 70 (444)
T PRK09060 71 -------------------------------------------------------------------------------- 70 (444)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCeEEeCCCCCcCEEEhHhHHHHhcccCCCCCHHHHHHHHHHHHHHHHhcCccEEEeCCcCCCCCccccchHHH
Q 008063 204 LSEDPNGGTIMKTSSGEPTGLLIDAAMKLILPWIPEVSVDERREALLRASNLALSRGVTTVVDFGRYYPGESVQLSWEDF 283 (579)
Q Consensus 204 ~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Git~v~~~~~~~~~~~~~~~~~~~ 283 (579)
...+.+....+.+.+.|+|++.++....+. ..+.+.+
T Consensus 71 ----------------------------------------~~~e~~~t~~~aa~~gGvTtv~~~p~~~p~---~~~~~~~ 107 (444)
T PRK09060 71 ----------------------------------------EHKEDLETGSRAAVLGGVTAVFEMPNTNPL---TTTAEAL 107 (444)
T ss_pred ----------------------------------------CccchHHHHHHHHHhCCcEEEEECCCCCCC---CChHHHH
Confidence 001234556777899999999998643322 2223333
Q ss_pred HHHHHHHhhcCCCeeEEEEccCcc--chhhHHHHHHhcCCCCCCceEEceEEEEEcCccCCCcccccCCCCCCCCCCccc
Q 008063 284 ADVYQWASYSEKMKIRVCLFFPLE--TWSSLADLINKTGHVLSDWVYLGGVKAFADGSLGSNSALFHEPYADEPHNYGLQ 361 (579)
Q Consensus 284 ~~~~~~~~~~~~~~i~v~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~k~~~dg~~~~~~~~~~~~~~~~~~~~~~~ 361 (579)
....+... ....+++..+.... +..+..+.... ....+++.+.+.... ...
T Consensus 108 ~~~~~~a~--~~~~~d~~~~~~~~~~~~~~l~el~~~--------~gv~g~k~fm~~~~~-----------------~~~ 160 (444)
T PRK09060 108 ADKLARAR--HRMHCDFAFYVGGTRDNADELAELERL--------PGCAGIKVFMGSSTG-----------------DLL 160 (444)
T ss_pred HHHHHHhc--ccceeeEEEEeccCCCCHHHHHHHHhh--------cCceEEEEEeccCCC-----------------Ccc
Confidence 33333322 22455555443222 22222222211 123455655421100 001
Q ss_pred CCCHHHHHHHHHHHHHCCCeEEEEecchHHHHH---------------------HHHHHHHHHHhcCCCCCCceEeeccC
Q 008063 362 VMELESLLSMTMASDKSGLQVAIHAIGDRANDL---------------------VLDMYKSVVVTTGKRDQRFRIEHAQH 420 (579)
Q Consensus 362 ~~~~~~l~~~~~~a~~~g~~i~iH~~g~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~i~H~~~ 420 (579)
..+...+.++++. .+..+.+|+....-++. ......+.....-..+.+.++.|...
T Consensus 161 ~~d~~~l~~~~~~---~~~~v~~H~E~~~l~~~~~~~~~~g~~~~~~~~~p~~aE~~av~~~~~la~~~~~~lhi~h~st 237 (444)
T PRK09060 161 VEDDEGLRRILRN---GRRRAAFHSEDEYRLRERKGLRVEGDPSSHPVWRDEEAALLATRRLVRLARETGRRIHVLHVST 237 (444)
T ss_pred cCCHHHHHHHHHh---CCCeEEEECCCHHHHHHHHHHHhcCCcccccccCCHHHHHHHHHHHHHHHHHHCCCEEEEeCCC
Confidence 1244556665544 58889999853321110 00111111111112345788889876
Q ss_pred CChhhHHHHhh--CCcEEEecccccccchhH-HH------HhhChhhhhhhhhhHHHHHHCCCeeeecCCCCCCCCC---
Q 008063 421 LASGTAARFGD--QGIVASMQPQHLLDDADS-AR------KKLGVDRAERESYLFQSLLANNALLALGSDWPVADIN--- 488 (579)
Q Consensus 421 ~~~~~~~~~~~--~~i~~~~~p~~~~~~~~~-~~------~~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD~~~~~~~--- 488 (579)
.+.++.++. ..+++.+||++.....+. +. +..+|.|..+....+.+.+++|+...++||.......
T Consensus 238 --~~~v~~i~~~~~~vt~ev~ph~l~l~~~~~~~~~~~~~k~~PPlr~~~~~~~l~~al~~G~id~i~sDh~p~~~~~k~ 315 (444)
T PRK09060 238 --AEEIDFLADHKDVATVEVTPHHLTLAAPECYERLGTLAQMNPPIRDARHRDGLWRGVRQGVVDVLGSDHAPHTLEEKA 315 (444)
T ss_pred --HHHHHHHHHhCCCeEEEeChHHhccCchhhcccCCceEEEeCCCCCHHHHHHHHHHHhCCCccEEecCCCCCCHHHhc
Confidence 444444433 348889999887654443 21 2344555546666788899999999999997543211
Q ss_pred -HH-------HHHHHHHcccCCCCCCCCCCCCCCCHHHHHHHHcHHHHHhcccCCccccccCCCcccEEEeCCCC-C---
Q 008063 489 -PL-------CAIRTAMKRIPPGWDNAWIPSERISLTDALIAHTLSAARACFLENDVGSLSPGKIADFVILSTSS-W--- 556 (579)
Q Consensus 489 -~~-------~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~npA~~lgl~~~~G~I~~G~~ADlvvld~~~-~--- 556 (579)
++ ..+..++.... ....+.+++++++++++|.|||+.+|+++ +|+|++|+.|||||+|.+. +
T Consensus 316 ~~~~~~~~G~~g~e~~~~l~~-----~~v~~g~l~~~~~~~~~s~~pa~~~gl~~-~G~l~~G~~ADlvl~d~~~~~~v~ 389 (444)
T PRK09060 316 KPYPASPSGMTGVQTLVPIML-----DHVNAGRLSLERFVDLTSAGPARIFGIAG-KGRIAVGYDADFTIVDLKRRETIT 389 (444)
T ss_pred CCcccCCCCcccHHHHHHHHH-----HHHHcCCCCHHHHHHHHhHhHHHHhCCCC-CCcccCCCcCCEEEEcCCCCEEEC
Confidence 00 00111000000 00123459999999999999999999954 7999999999999999663 2
Q ss_pred ----------CChhhc-cCCeEEEEEECCEEeC
Q 008063 557 ----------EDFAAE-VSASIEATYVSGVQAY 578 (579)
Q Consensus 557 ----------~~~~~~-~~~~v~~v~v~G~~v~ 578 (579)
+++... ...++..||++|++||
T Consensus 390 ~~~~~s~~~~sp~~g~~l~g~~~~tiv~G~~v~ 422 (444)
T PRK09060 390 NEWIASRCGWTPYDGKEVTGWPVGTIVRGQRVM 422 (444)
T ss_pred hHHhcccCCCCCCCCCEEeeeEEEEEECCEEEE
Confidence 122221 1457899999999986
|
|
| >TIGR01975 isoAsp_dipep isoaspartyl dipeptidase IadA | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.2e-27 Score=240.78 Aligned_cols=177 Identities=18% Similarity=0.166 Sum_probs=113.3
Q ss_pred CCHHHHHHHHHHHHHCC----Ce--EEEEec-chHHHHHHHHHHHHHHHhcCCCCCCceEeeccCCC------hhhHHHH
Q 008063 363 MELESLLSMTMASDKSG----LQ--VAIHAI-GDRANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLA------SGTAARF 429 (579)
Q Consensus 363 ~~~~~l~~~~~~a~~~g----~~--i~iH~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~i~H~~~~~------~~~~~~~ 429 (579)
.+.++++++...++..| .+ +++|.- +....+.+++.+++. . ...+..|..+++ ++.++.+
T Consensus 168 ~~~~~l~~~~~~~~~~g~~~~~~g~~~vH~g~~~~~l~~l~~~~~~~----d---i~~~~f~pth~~r~~~l~~~~i~~~ 240 (389)
T TIGR01975 168 PTVEHLTNMAAEARVGGLLGGKPGIVNFHVGDSKRALQPIYELVENT----D---VPITQFLPTHINRNVPLFEAGLEFA 240 (389)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCchhhHHHHHHHHHhc----C---CChhheecCccCCCHHHHHHHHHHH
Confidence 57899999999999999 88 888874 445556666655442 1 111222222222 3344444
Q ss_pred hhCCcEEEecccccccchhHHHHhhChhhhhhhhhhHHHHHHCCCe---eeecCCCCCCC--C---------------CH
Q 008063 430 GDQGIVASMQPQHLLDDADSARKKLGVDRAERESYLFQSLLANNAL---LALGSDWPVAD--I---------------NP 489 (579)
Q Consensus 430 ~~~~i~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~~Gi~---v~~gsD~~~~~--~---------------~~ 489 (579)
++ +..+++.-..... .+..... .....++.++++|++ ++++||...+. . +.
T Consensus 241 ~~-gg~iDv~~~~~~~-------~l~~~~~-~~~~~~~~~~~~Gv~~~~i~isSD~~gs~p~~~~~g~~~~~g~g~~~sl 311 (389)
T TIGR01975 241 KK-GGTIDLTSSIDPQ-------FRKEGEV-APAEGIKKALEAGVPLEKVTFSSDGNGSQPFFDENGELTGLGVGSFETL 311 (389)
T ss_pred Hh-CCcEEEeCCCCcc-------chhcccc-ChHHHHHHHHHcCCCcceEEEEeCCCCCCCccccccccccCCcCcHHHH
Confidence 44 5555554222211 0110000 222246899999996 59999975322 1 12
Q ss_pred HHHHHHHHcccCCCCCCCCCCCCCCCHHHHHHHHcHHHHHhcccCCccccccCCCcccEEEeCCCCCCChhhccCCeEEE
Q 008063 490 LCAIRTAMKRIPPGWDNAWIPSERISLTDALIAHTLSAARACFLENDVGSLSPGKIADFVILSTSSWEDFAAEVSASIEA 569 (579)
Q Consensus 490 ~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~npA~~lgl~~~~G~I~~G~~ADlvvld~~~~~~~~~~~~~~v~~ 569 (579)
+..++.++. ..++++++||+++|.|||+.||++ .+|+|++|+.|||+|||.+. ++..
T Consensus 312 ~~~~~~lv~------------~g~ls~~eal~~~T~npA~~Lgl~-~~G~I~~G~~ADlvild~~~----------~i~~ 368 (389)
T TIGR01975 312 FEEVREAVK------------DGDVPLEKALRVITSNVAGVLNLT-GKGEISPGNDADLVVLDPDL----------RIHS 368 (389)
T ss_pred HHHHHHHHH------------hCCCCHHHHHHHHHHHHHHHhCCC-CCCeECCCCcCCEEEEcCCC----------CEEE
Confidence 445554443 234999999999999999999998 58999999999999999772 5677
Q ss_pred EEECCEEeC
Q 008063 570 TYVSGVQAY 578 (579)
Q Consensus 570 v~v~G~~v~ 578 (579)
||.+|++++
T Consensus 369 v~~~G~~v~ 377 (389)
T TIGR01975 369 VIARGKLMV 377 (389)
T ss_pred EEECCEEEE
Confidence 777777654
|
The L-isoaspartyl derivative of Asp arises non-enzymatically over time as a form of protein damage. In this isomerization, the connectivity of the polypeptide changes to pass through the beta-carboxyl of the side chain. Much but not all of this damage can be repaired by protein-L-isoaspartate (D-aspartate) O-methyltransferase. This model describes the isoaspartyl dipeptidase IadA, apparently one of two such enzymes in E. coli, an enzyme that degrades isoaspartyl dipeptides and may unblock degradation of proteins that cannot be repaired. This model also describes closely related proteins from other species (e.g. Clostridium perfringens, Thermoanaerobacter tengcongensis) that we assume to be equivalent in function. This family shows homology to dihydroorotases. |
| >PRK02382 dihydroorotase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.6e-26 Score=240.12 Aligned_cols=356 Identities=21% Similarity=0.284 Sum_probs=217.1
Q ss_pred ccEEEEcCeEEeCCCCCCeeeEEEEECCEEEEecChHHHHhhccCCCeEEeCCCCeeecccccccccccccCcccccccc
Q 008063 45 ADLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHFIPGGLQMARVKL 124 (579)
Q Consensus 45 ~~~likn~~v~~~~~~~~~~~~v~I~~GkI~~Ig~~~~~~~~~~~~~~viD~~g~~V~PG~ID~H~H~~~~~~~~~~~~~ 124 (579)
.+++|+|++|++..+ ...++|+|+||||++|++..+. +++.++||++|++|+|||||+|+|+..++.
T Consensus 2 ~dl~i~n~~v~~~~~--~~~~~v~I~dg~I~~i~~~~~~----~~~~~~id~~g~~v~PG~ID~H~H~~~~g~------- 68 (443)
T PRK02382 2 RDALLKDGRVYYNNS--LQPRDVRIDGGKITAVGKDLDG----SSSEEVIDARGMLLLPGGIDVHVHFREPGY------- 68 (443)
T ss_pred ceEEEECCEEEeCCC--ceEEEEEEECCEEEEecCCCCC----CCCCeEEECCCCEEcCCEeeeeeeccCCCC-------
Confidence 468999999998543 3567999999999999764221 134689999999999999999999754321
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCCCeEEEeCCCCCCCCCCCCChHHhhhhCCCCeEEEEeCCCchhhhcHHHHHHcCCCCC
Q 008063 125 RGVSHKDEFVRRVKEAVKNSKKGSWILGGGWNNDLWGGDLPMASWIDDITPHNPVWLSRMDGHMGLANSVALQLVGITNL 204 (579)
Q Consensus 125 ~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~p~~~~ld~~~~~~p~~~~~~~~~~~~~n~~~~~~~g~~~~ 204 (579)
.
T Consensus 69 ----------------------------------------~--------------------------------------- 69 (443)
T PRK02382 69 ----------------------------------------T--------------------------------------- 69 (443)
T ss_pred ----------------------------------------C---------------------------------------
Confidence 0
Q ss_pred CCCCCCCeEEeCCCCCcCEEEhHhHHHHhcccCCCCCHHHHHHHHHHHHHHHHhcCccEEEeCCcCCCCCccccchHHHH
Q 008063 205 SEDPNGGTIMKTSSGEPTGLLIDAAMKLILPWIPEVSVDERREALLRASNLALSRGVTTVVDFGRYYPGESVQLSWEDFA 284 (579)
Q Consensus 205 ~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Git~v~~~~~~~~~~~~~~~~~~~~ 284 (579)
..+.+....+.+.+.|+|++.++....+.. ...+.+.
T Consensus 70 ----------------------------------------~~e~~~~~~~aa~~gGvTtv~~~~~t~p~~---~~~~~~~ 106 (443)
T PRK02382 70 ----------------------------------------HKETWYTGSRSAAAGGVTTVVDQPNTDPPT---VDGESFD 106 (443)
T ss_pred ----------------------------------------chhhHHHHHHHHHhCCcEEEEECCCCCCCC---ChHHHHH
Confidence 012334567789999999999986432221 1222222
Q ss_pred HHHHHHhhcCCCeeEEEEccCcc-chhhHHHHHHhcCCCCCCceEEceE-EEEEcCccCCCcccccCCCCCCCCCCcccC
Q 008063 285 DVYQWASYSEKMKIRVCLFFPLE-TWSSLADLINKTGHVLSDWVYLGGV-KAFADGSLGSNSALFHEPYADEPHNYGLQV 362 (579)
Q Consensus 285 ~~~~~~~~~~~~~i~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~-k~~~dg~~~~~~~~~~~~~~~~~~~~~~~~ 362 (579)
...+.... ...+.+....... +..+..++... + ..++ |++.... . +...
T Consensus 107 ~~~~~a~~--~s~v~~~~~~~~~~~~~~l~~l~~~-g--------v~~~gkv~~~~~------------~------~~~~ 157 (443)
T PRK02382 107 EKAELAAR--KSIVDFGINGGVTGNWDPLESLWER-G--------VFALGEIFMADS------------T------GGMG 157 (443)
T ss_pred HHHHHhCc--CceEEEEEEeeeccchhhHHHHHhc-C--------ccceeEEEEEec------------C------CCcc
Confidence 22222222 1233333222111 12222222211 0 0111 2221000 0 0011
Q ss_pred CCHHHHHHHHHHHHHCCCeEEEEecchHHHHHHHHH----------------------HHHHHHhcCCCCCCceEeeccC
Q 008063 363 MELESLLSMTMASDKSGLQVAIHAIGDRANDLVLDM----------------------YKSVVVTTGKRDQRFRIEHAQH 420 (579)
Q Consensus 363 ~~~~~l~~~~~~a~~~g~~i~iH~~g~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~i~H~~~ 420 (579)
.+++.+.++++.+++.|.++.+|+....-.+..... ..+.....-..+.+.++.|...
T Consensus 158 ~~~~~l~~~~~~a~~~g~~v~~H~e~~~~~~~~~~~~~g~~~~~~~~~~~p~~~E~~av~~~~~la~~~g~~~hi~h~ss 237 (443)
T PRK02382 158 IDEELFEEALAEAARLGVLATVHAEDEDLFDELAKLLKGDADADAWSAYRPAAAEAAAVERALEVASETGARIHIAHIST 237 (443)
T ss_pred cCHHHHHHHHHHHHhcCCeEEEecCCHHHHHHhhHhhcCCCCHhhCCCcCCHHHHHHHHHHHHHHHHHhCCCEEEEECCC
Confidence 467889999999999999999998643211111000 0011000011245777888754
Q ss_pred CChhhHHHHhhCCcEEEecccccccchhHHHH------hhChhhhhhhhhhHHHHHHCCCeeeecCCCCCCCCC------
Q 008063 421 LASGTAARFGDQGIVASMQPQHLLDDADSARK------KLGVDRAERESYLFQSLLANNALLALGSDWPVADIN------ 488 (579)
Q Consensus 421 ~~~~~~~~~~~~~i~~~~~p~~~~~~~~~~~~------~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD~~~~~~~------ 488 (579)
.+.++.+++..+++.+||++...+.+.+.. ..+|.|..+....+.+.++.|...+++||....+..
T Consensus 238 --~~~~~~i~~~~vt~ev~ph~L~l~~~~~~~~~~~~k~~PPlr~~~d~~aL~~~l~~g~i~~i~sDh~P~~~~~K~~~~ 315 (443)
T PRK02382 238 --PEGVDAARREGITCEVTPHHLFLSRRDWERLGTFGKMNPPLRSEKRREALWERLNDGTIDVVASDHAPHTREEKDADI 315 (443)
T ss_pred --HHHHHHHHHCCcEEEEchhhhhcCHHHHhccCceEEEcCCCCChHHHHHHHHHHhCCCCCEEEcCCCCCCHHHhcCCh
Confidence 455566666668999999988766554422 345555545566677788899999999997644210
Q ss_pred ------------HHHHHHHHHcccCCCCCCCCCCCCCCCHHHHHHHHcHHHHHhcccCCccccccCCCcccEEEeCCCCC
Q 008063 489 ------------PLCAIRTAMKRIPPGWDNAWIPSERISLTDALIAHTLSAARACFLENDVGSLSPGKIADFVILSTSSW 556 (579)
Q Consensus 489 ------------~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~npA~~lgl~~~~G~I~~G~~ADlvvld~~~~ 556 (579)
.+..+..++ .+.+++++++++++|.|||+.+|++ .+|+|++|+.|||+|+|.+..
T Consensus 316 ~~~~~G~~g~e~~~~~~~~~~------------~~~~~~l~~~~~~~t~~pA~~~g~~-~~G~l~~G~~AD~vi~d~~~~ 382 (443)
T PRK02382 316 WDAPSGVPGVETMLPLLLAAV------------RKNRLPLERVRDVTAANPARIFGLD-GKGRIAEGYDADLVLVDPDAA 382 (443)
T ss_pred hhCCCCcccHHHHHHHHHHHH------------HcCCCCHHHHHHHHhHHHHHHcCCC-CCCccCCCCcCCEEEEcCCCc
Confidence 111111111 3456999999999999999999996 479999999999999997532
Q ss_pred -C-Chhhc------------cCCeEEEEEECCEEeCC
Q 008063 557 -E-DFAAE------------VSASIEATYVSGVQAYP 579 (579)
Q Consensus 557 -~-~~~~~------------~~~~v~~v~v~G~~v~~ 579 (579)
. ..+.+ ....+..||++|++||.
T Consensus 383 ~~~~~~~~~s~~~~sp~~g~~~~~v~~tiv~G~~v~~ 419 (443)
T PRK02382 383 REIRGDDLHSKAGWTPFEGMEGVFPELTMVRGTVVWD 419 (443)
T ss_pred EEEcHHHhcccCCCCCcCCCEeceEEEEEECCEEEEE
Confidence 2 11111 12377899999999873
|
|
| >PRK07369 dihydroorotase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.2e-26 Score=240.30 Aligned_cols=333 Identities=17% Similarity=0.151 Sum_probs=208.9
Q ss_pred ccEEEEcCeEEeCCCCCCeeeEEEEECCEEEEecChHHHHhhccCCCeEEeCCCCeeecccccccccccccCcccccccc
Q 008063 45 ADLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHFIPGGLQMARVKL 124 (579)
Q Consensus 45 ~~~likn~~v~~~~~~~~~~~~v~I~~GkI~~Ig~~~~~~~~~~~~~~viD~~g~~V~PG~ID~H~H~~~~~~~~~~~~~ 124 (579)
.+++|+|++|+++.+.....++|+|+||||++|++..... +.+.++||++|++|+|||||+|+|+..++.
T Consensus 2 ~~~~i~n~~v~d~~~~~~~~~~v~I~dg~I~~i~~~~~~~---~~~~~~iDa~G~~vlPG~ID~H~H~~~~~~------- 71 (418)
T PRK07369 2 SNELLQQVRVLDPVSNTDRIADVLIEDGKIQAIEPHIDPI---PPDTQIIDASGLILGPGLVDLYSHSGEPGF------- 71 (418)
T ss_pred CCEEEeCeEEECCCCCcccceeEEEECCEEEEecCCcccC---CCCCEEEECCCCEEecCEEecccccCCCCc-------
Confidence 4689999999987655446789999999999998643211 245789999999999999999999754321
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCCCeEEEeCCCCCCCCCCCCChHHhhhhCCCCeEEEEeCCCchhhhcHHHHHHcCCCCC
Q 008063 125 RGVSHKDEFVRRVKEAVKNSKKGSWILGGGWNNDLWGGDLPMASWIDDITPHNPVWLSRMDGHMGLANSVALQLVGITNL 204 (579)
Q Consensus 125 ~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~p~~~~ld~~~~~~p~~~~~~~~~~~~~n~~~~~~~g~~~~ 204 (579)
T Consensus 72 -------------------------------------------------------------------------------- 71 (418)
T PRK07369 72 -------------------------------------------------------------------------------- 71 (418)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCeEEeCCCCCcCEEEhHhHHHHhcccCCCCCHHHHHHHHHHHHHHHHhcCccEEEeCCcCCCCCccccchHHHH
Q 008063 205 SEDPNGGTIMKTSSGEPTGLLIDAAMKLILPWIPEVSVDERREALLRASNLALSRGVTTVVDFGRYYPGESVQLSWEDFA 284 (579)
Q Consensus 205 ~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Git~v~~~~~~~~~~~~~~~~~~~~ 284 (579)
..++.+....+.+++.|+|++.++... .|.....+..
T Consensus 72 ---------------------------------------~~~e~~~s~~~aa~~GGvTtv~~~pn~----~P~~~~~~~~ 108 (418)
T PRK07369 72 ---------------------------------------EERETLASLAAAAAAGGFTRVAILPDT----FPPLDNPATL 108 (418)
T ss_pred ---------------------------------------CCCccHHHHHHHHHhCCceEEEECCCC----CCCCCCHHHH
Confidence 001133446778999999999998643 2222333333
Q ss_pred HHHHHHhhcCCCeeEEEEccCccc------hhhHHHHHHhcCCCCCCceEEceEEEEEcCccCCCcccccCCCCCCCCCC
Q 008063 285 DVYQWASYSEKMKIRVCLFFPLET------WSSLADLINKTGHVLSDWVYLGGVKAFADGSLGSNSALFHEPYADEPHNY 358 (579)
Q Consensus 285 ~~~~~~~~~~~~~i~v~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~g~k~~~dg~~~~~~~~~~~~~~~~~~~~ 358 (579)
..++...... ..+++..+..... ..+..+..+ .|+..+.++
T Consensus 109 ~~~~~~~~~~-~~vd~~~~~~~~~~~~~~~~~ei~~l~~------------~Gv~~f~~~-------------------- 155 (418)
T PRK07369 109 ARLQQQAQQI-PPVQLHFWGALTLGGQGKQLTELAELAA------------AGVVGFTDG-------------------- 155 (418)
T ss_pred HHHHHHhccc-CceeEEEEEEEeeCCCCccHhhHHHHHH------------CCCEEEECC--------------------
Confidence 3333322222 2344444333211 222222211 122222110
Q ss_pred cccCCCHHHHHHHHHHHHHCCCeEEEEecchHHHH---------------------HHHHHHHHHHHhcCCCCCCceEee
Q 008063 359 GLQVMELESLLSMTMASDKSGLQVAIHAIGDRAND---------------------LVLDMYKSVVVTTGKRDQRFRIEH 417 (579)
Q Consensus 359 ~~~~~~~~~l~~~~~~a~~~g~~i~iH~~g~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~i~H 417 (579)
....+.+.+.+.++.+++.|.++.+|+....-+. .......+...-.-..+.+.++.|
T Consensus 156 -~~~~~~~~l~~~~~~~~~~~~~v~~H~Ed~~l~~~~~~~~g~~~~~~~~~~~p~~aE~~av~r~~~la~~~~~~~hi~H 234 (418)
T PRK07369 156 -QPLENLALLRRLLEYLKPLGKPVALWPCDRSLAGNGVMREGLLALRLGLPGDPASAETTALAALLELVAAIGTPVHLMR 234 (418)
T ss_pred -CcCCCHHHHHHHHHHHHhcCCeEEEecCChhhhhcCcccCChhHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCcEEEEe
Confidence 1113566888999999999999999996322100 000011111111112256888999
Q ss_pred ccCCCh-hhHHHHhhC--CcEEEecccccccchhHHH------HhhChhhhhhhhhhHHHHHHCCCeeeecCCCCCCCCC
Q 008063 418 AQHLAS-GTAARFGDQ--GIVASMQPQHLLDDADSAR------KKLGVDRAERESYLFQSLLANNALLALGSDWPVADIN 488 (579)
Q Consensus 418 ~~~~~~-~~~~~~~~~--~i~~~~~p~~~~~~~~~~~------~~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD~~~~~~~ 488 (579)
...-.. +.++..++. .+++.+||++...+.+.+. +..+|.|..+....+...++.|....++||.+.....
T Consensus 235 vSs~~~~~~i~~ak~~g~~vt~Ev~phhL~l~~~~~~~~~~~~kv~PPLR~~~d~~aL~~~l~~G~Id~i~SDHaP~~~~ 314 (418)
T PRK07369 235 ISTARSVELIAQAKARGLPITASTTWMHLLLDTEALASYDPNLRLDPPLGNPSDRQALIEGVRTGVIDAIAIDHAPYTYE 314 (418)
T ss_pred CCCHHHHHHHHHHHHcCCCeEEEecHHHHhccHHHHhccCCCcEECCCCCCHHHHHHHHHHHhcCCCCEEEcCCCCCCHH
Confidence 876332 344444544 4788999999886665543 3346677667777888999999999999997644310
Q ss_pred ----HHHH-----------HHHHHcccCCCCCCCCCCCCCCCHHHHHHHHcHHHHHhcccCCccccccCCCcccEEEeCC
Q 008063 489 ----PLCA-----------IRTAMKRIPPGWDNAWIPSERISLTDALIAHTLSAARACFLENDVGSLSPGKIADFVILST 553 (579)
Q Consensus 489 ----~~~~-----------~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~npA~~lgl~~~~G~I~~G~~ADlvvld~ 553 (579)
.|.. +..++.. +....+++++++++++|.|||+.||++ .|+|++|++|||+++|.
T Consensus 315 ~K~~~~~~~~~G~~G~e~~l~~~~~~--------~v~~~~i~l~~~v~~~s~nPA~~lgl~--~G~i~~G~~ADlvi~d~ 384 (418)
T PRK07369 315 EKTVAFAEAPPGAIGLELALPLLWQN--------LVETGELSALQLWQALSTNPARCLGQE--PPSLAPGQPAELILFDP 384 (418)
T ss_pred HccCCHhHCCCCceeHHHHHHHHHHH--------HHHcCCCCHHHHHHHHHHhHHHHhCCC--cCcccCCCcCCEEEEcC
Confidence 1111 1111110 113456999999999999999999996 49999999999999997
Q ss_pred C
Q 008063 554 S 554 (579)
Q Consensus 554 ~ 554 (579)
+
T Consensus 385 ~ 385 (418)
T PRK07369 385 Q 385 (418)
T ss_pred C
Confidence 6
|
|
| >cd01309 Met_dep_hydrolase_C Metallo-dependent hydrolases, subgroup C is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.8e-27 Score=240.16 Aligned_cols=177 Identities=26% Similarity=0.291 Sum_probs=136.1
Q ss_pred HHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhcCCCCCCceEeeccCCChhhHHHHhhCCcEEEecccccccc
Q 008063 367 SLLSMTMASDKSGLQVAIHAIGDRANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLASGTAARFGDQGIVASMQPQHLLDD 446 (579)
Q Consensus 367 ~l~~~~~~a~~~g~~i~iH~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~H~~~~~~~~~~~~~~~~i~~~~~p~~~~~~ 446 (579)
.++.++...+. .+++.+|+.+...+..+++..++. +.+..+.|+... .+.++++++.++.++++|.++...
T Consensus 181 ~l~~l~~~~~~-~~~v~vHa~~~~~i~~~l~~~~e~-------g~~~~i~H~~~~-~~~~~~la~~gv~v~~~P~~~~~~ 251 (359)
T cd01309 181 KLEALLPVLKG-EIPVRIHAHRADDILTAIRIAKEF-------GIKITIEHGAEG-YKLADELAKHGIPVIYGPTLTLPK 251 (359)
T ss_pred cHHHHHHHHcC-CeeEEEEeCCHHHHHHHHHHHHHc-------CCCEEEECchhH-HHHHHHHHHcCCCEEECccccccc
Confidence 34555555443 389999999888777777766553 235789999887 778899999999999999876532
Q ss_pred hhHHHHhhChhhhhhhhhhHHHHHHCC-CeeeecCCCCCCCC-CHHHHHHHHHcccCCCCCCCCCCCCCCCHHHHHHHHc
Q 008063 447 ADSARKKLGVDRAERESYLFQSLLANN-ALLALGSDWPVADI-NPLCAIRTAMKRIPPGWDNAWIPSERISLTDALIAHT 524 (579)
Q Consensus 447 ~~~~~~~l~~~~~~~~~~~l~~l~~~G-i~v~~gsD~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T 524 (579)
.. ..+. ....+++.+.++| +++++|||++..+. ..+..+..++ ..+++++++|+++|
T Consensus 252 ~~-------~~~~-~~~~~~~~l~~aGGv~valgsD~~~~~~~~l~~~~~~a~-------------~~gl~~~~al~~~T 310 (359)
T cd01309 252 KV-------EEVN-DAIDTNAYLLKKGGVAFAISSDHPVLNIRNLNLEAAKAV-------------KYGLSYEEALKAIT 310 (359)
T ss_pred cH-------HHhh-cchhhHHHHHHcCCceEEEECCCCCccchhHHHHHHHHH-------------HcCCCHHHHHHHHH
Confidence 21 0111 4456788999998 99999999875432 2333333222 24589999999999
Q ss_pred HHHHHhcccCCccccccCCCcccEEEeCCCCCCChhhccCCeEEEEEECCEEeC
Q 008063 525 LSAARACFLENDVGSLSPGKIADFVILSTSSWEDFAAEVSASIEATYVSGVQAY 578 (579)
Q Consensus 525 ~npA~~lgl~~~~G~I~~G~~ADlvvld~~~~~~~~~~~~~~v~~v~v~G~~v~ 578 (579)
.|||++||+++++|+|++||.|||||||++|++. ..++..||++|++||
T Consensus 311 ~n~A~~lg~~~~~G~l~~G~~ADlvv~d~dpl~~-----~~~v~~v~i~G~~v~ 359 (359)
T cd01309 311 INPAKILGIEDRVGSLEPGKDADLVVWNGDPLEP-----TSKPEQVYIDGRLVY 359 (359)
T ss_pred HHHHHHhCCCCCcccCCCCCccCEEEECCCcccc-----cCcccEEEECCEEeC
Confidence 9999999999989999999999999999999874 348999999999987
|
The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown. |
| >PRK08417 dihydroorotase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.9e-27 Score=243.23 Aligned_cols=211 Identities=13% Similarity=0.122 Sum_probs=139.0
Q ss_pred CCHHHHHHHHHHHHHCCCeEEEEecchHHHHHH---------------------HHHHHHHHHhcCCCCCCceEeeccCC
Q 008063 363 MELESLLSMTMASDKSGLQVAIHAIGDRANDLV---------------------LDMYKSVVVTTGKRDQRFRIEHAQHL 421 (579)
Q Consensus 363 ~~~~~l~~~~~~a~~~g~~i~iH~~g~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~i~H~~~~ 421 (579)
.+.+.+.++++.+++.|.++.+|+....-.+.. ..+..+...-....+.+.++.|...-
T Consensus 127 ~~~~~l~~~~~~a~~~g~~V~~HaEd~~~~~~~~~~~g~~~~~~~~~~rp~~aE~~~v~~~~~la~~~~~~lhi~hvS~~ 206 (386)
T PRK08417 127 LDANLLKVIAQYAKMLDVPIFCRCEDSSFDDSGVMNDGELSFELGLPGIPSIAETKEVAKMKELAKFYKNKVLFDTLALP 206 (386)
T ss_pred CCHHHHHHHHHHHHHcCCEEEEeCCCHHHhhHHHHhcChhhHHhCCCCCCHHHHHHHHHHHHHHHHHhCCCEEEEeCCCH
Confidence 567889999999999999999999643211100 00111111111123558888888663
Q ss_pred Ch-hhHHHHhhCC--cEEEecccccccchhHHH------HhhChhhhhhhhhhHHHHHHCCCeeeecCCCCCCCCC----
Q 008063 422 AS-GTAARFGDQG--IVASMQPQHLLDDADSAR------KKLGVDRAERESYLFQSLLANNALLALGSDWPVADIN---- 488 (579)
Q Consensus 422 ~~-~~~~~~~~~~--i~~~~~p~~~~~~~~~~~------~~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD~~~~~~~---- 488 (579)
.. +.++..++.| +++.+||++...+.+.+. +..+|.|.++....+.+.+..|....++||....+..
T Consensus 207 ~~~~~i~~ak~~g~~vt~ev~ph~L~l~~~~~~~~~~~~k~~PPlR~~~d~~~L~~~l~~g~Id~i~SDHaP~~~~~K~~ 286 (386)
T PRK08417 207 RSLELLDKFKSEGEKLLKEVSIHHLILDDSACENFNTAAKLNPPLRSKEDRLALLEALKEGKIDFLTSLHSAKSNSKKDL 286 (386)
T ss_pred HHHHHHHHHHHCCCCEEEEechHHHeeCHHHhcCcCcccEECCCCCCHHHHHHHHHHHhcCCceEEEcCCCCCCHHHccC
Confidence 32 3344445454 788999999887665442 3456677667777888889999999999997644210
Q ss_pred HHH-------HHHHHHcccCCCCCCCCCCCCCCCHHHHHHHHcHHHHHhcccCCccccccCCCcccEEEeCCCC------
Q 008063 489 PLC-------AIRTAMKRIPPGWDNAWIPSERISLTDALIAHTLSAARACFLENDVGSLSPGKIADFVILSTSS------ 555 (579)
Q Consensus 489 ~~~-------~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~npA~~lgl~~~~G~I~~G~~ADlvvld~~~------ 555 (579)
.+. .+..++.-.. ..+..+.+++++++++++|.|||+.||+++ |+|++|+.|||+++|.+.
T Consensus 287 ~~~~a~~G~~g~e~~~~~~~----~~~v~~~~~~~~~~~~~~t~~pA~~lgl~~--G~l~~G~~ADlvi~d~~~~~~~~~ 360 (386)
T PRK08417 287 AFDEAAFGIDSICEYFSLCY----TYLVKEGIITWSELSRFTSYNPAQFLGLNS--GEIEVGKEADLVLFDPNESTIIDD 360 (386)
T ss_pred CHhHCCCCchHHHHHHHHHH----HHHHhcCCCCHHHHHHHHHHHHHHHhCCCC--CccCCCCcCCEEEEcCCCCeEeCC
Confidence 111 1111111000 001134569999999999999999999964 999999999999999763
Q ss_pred -CCChhhc-cCCeEEEEEECCEEeCC
Q 008063 556 -WEDFAAE-VSASIEATYVSGVQAYP 579 (579)
Q Consensus 556 -~~~~~~~-~~~~v~~v~v~G~~v~~ 579 (579)
+.++... ...+|..||++|++||.
T Consensus 361 ~~~p~~g~~~~g~v~~tiv~G~~v~~ 386 (386)
T PRK08417 361 NFSLYSGDELYGKIEAVIIKGKLYLE 386 (386)
T ss_pred CCCCccCCEEeccEEEEEECCEEEeC
Confidence 2232221 24589999999999974
|
|
| >PRK10657 isoaspartyl dipeptidase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.1e-26 Score=236.50 Aligned_cols=179 Identities=22% Similarity=0.210 Sum_probs=116.1
Q ss_pred CCHHHHHHHHHHHHHCCC------eEEEEecchHHHHHHHHHHHHHHHhcCCCCCCceEeeccC---CChhhHHHHhhCC
Q 008063 363 MELESLLSMTMASDKSGL------QVAIHAIGDRANDLVLDMYKSVVVTTGKRDQRFRIEHAQH---LASGTAARFGDQG 433 (579)
Q Consensus 363 ~~~~~l~~~~~~a~~~g~------~i~iH~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~H~~~---~~~~~~~~~~~~~ 433 (579)
.+.+.+.++.+.++..+. ++++|+.... ..++...+.....|....++...|+.. ..++.++.++ .|
T Consensus 168 ~~~~~l~~~~~~a~~~~~~~g~~~~i~vH~~~~~---~~l~~v~~~l~~~Gv~~~~~~~~H~~~~~~~~~~~~~~~~-~G 243 (388)
T PRK10657 168 PTVEELARLAAEARVGGLLSGKAGIVHVHMGDGK---KGLQPLFELLENTDIPISQFLPTHVNRNEPLFEQALEFAK-KG 243 (388)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCch---HHHHHHHHHHHhcCCCcceeeCcccCCCHHHHHHHHHHHH-cC
Confidence 467788887777765444 7999987322 222222223334565555666777665 3334444444 56
Q ss_pred cEEEec-ccccccchhHHHHhhChhhhhhhhhhHHHHHHCCC---eeeecCCCCCCC-----------------CCHHHH
Q 008063 434 IVASMQ-PQHLLDDADSARKKLGVDRAERESYLFQSLLANNA---LLALGSDWPVAD-----------------INPLCA 492 (579)
Q Consensus 434 i~~~~~-p~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~~Gi---~v~~gsD~~~~~-----------------~~~~~~ 492 (579)
..+.+. +..... .+... .....+..+++.|+ +++++||..... ...+..
T Consensus 244 ~~~~v~~~~~~~~---------~~~~~-~~~~~l~~~~~~G~~~d~v~l~tD~~~~~~~~~~~g~~~~~g~~~~~~l~~~ 313 (388)
T PRK10657 244 GVIDLTTSDPDFL---------GEGEV-APAEALKRALEAGVPLSRVTLSSDGNGSLPKFDEDGNLVGLGVGSVESLLEE 313 (388)
T ss_pred CeEEEecCCCccc---------ccCcc-CHHHHHHHHHHcCCChhheEEECCCCCCCceeccCCCEeccCcCchhhHHHH
Confidence 555333 222110 00000 22346789999998 789999953211 114445
Q ss_pred HHHHHcccCCCCCCCCCCCCCCCHHHHHHHHcHHHHHhcccCCccccccCCCcccEEEeCCCCCCChhhccCCeEEEEEE
Q 008063 493 IRTAMKRIPPGWDNAWIPSERISLTDALIAHTLSAARACFLENDVGSLSPGKIADFVILSTSSWEDFAAEVSASIEATYV 572 (579)
Q Consensus 493 ~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~npA~~lgl~~~~G~I~~G~~ADlvvld~~~~~~~~~~~~~~v~~v~v 572 (579)
+..++. ..+++++++++++|.|||+.+|+++ +|+|++|+.|||+++|.+. ++..||+
T Consensus 314 ~~~~~~------------~~gis~~~~l~~aT~npA~~lg~~~-~G~l~~G~~AD~vv~~~~~----------~~~~~~~ 370 (388)
T PRK10657 314 VRELVK------------DEGLPLEDALKPLTSNVARFLKLNG-KGEILPGKDADLLVLDDDL----------RIEQVIA 370 (388)
T ss_pred HHHHHH------------hcCCCHHHHHHHHHHHHHHHhCCCC-CCccCCCCccCEEEECCCC----------CEEEEEE
Confidence 554442 3469999999999999999999987 8999999999999999322 6999999
Q ss_pred CCEEeC
Q 008063 573 SGVQAY 578 (579)
Q Consensus 573 ~G~~v~ 578 (579)
+|++|+
T Consensus 371 ~G~~v~ 376 (388)
T PRK10657 371 KGKLMV 376 (388)
T ss_pred CCEEEE
Confidence 999886
|
|
| >PRK09237 dihydroorotase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.3e-26 Score=238.36 Aligned_cols=175 Identities=15% Similarity=0.135 Sum_probs=113.1
Q ss_pred HHHHHHHHHCCCeEEEEecchH-HHHHHHHHHHHHHHhcCCCCCCceEeeccCCCh-----------hhHHHHhhCCcEE
Q 008063 369 LSMTMASDKSGLQVAIHAIGDR-ANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLAS-----------GTAARFGDQGIVA 436 (579)
Q Consensus 369 ~~~~~~a~~~g~~i~iH~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~i~H~~~~~~-----------~~~~~~~~~~i~~ 436 (579)
+.....+++.|.++.+|+.... ...++.+.+ .....+.||...++ +......+.|..+
T Consensus 171 ~~~~~~a~~~g~~v~~H~~~~~~~~~~l~~~l----------~~g~~~~H~~~~~~~~~~~~~~~~~~~a~~~l~~G~~~ 240 (380)
T PRK09237 171 ELAKAIAAEANLPLMVHIGNPPPSLEEILELL----------RPGDILTHCFNGKPNRILDEDGELRPSVLEALERGVRL 240 (380)
T ss_pred HHHHHHHHhcCCCEEEEcCCCCCCHHHHHhhc----------cCCCEEEecCCCCCCCccCCCCcchHHHHHHHHCCEEE
Confidence 3344445589999999995332 223322211 11236899987776 5667777788888
Q ss_pred EecccccccchhHHHHhhChhhhhhhhhhHHHHHHCCC-eeeecCCCCCCC--CCHHHHHHHHHcccCCCCCCCCCCCCC
Q 008063 437 SMQPQHLLDDADSARKKLGVDRAERESYLFQSLLANNA-LLALGSDWPVAD--INPLCAIRTAMKRIPPGWDNAWIPSER 513 (579)
Q Consensus 437 ~~~p~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~~Gi-~v~~gsD~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 513 (579)
.+...+.. ........+.+.|+ +.+++||..... ..+...+...+.+. .+.+
T Consensus 241 ~ig~g~~~----------------~~~~~~~~l~~~g~~~~~l~tD~~~~~~~~~~~~~l~~~~~~~---------~~~g 295 (380)
T PRK09237 241 DVGHGTAS----------------FSFKVAEAAIAAGILPDTISTDIYCRNRINGPVYSLATVMSKF---------LALG 295 (380)
T ss_pred EecCCCCc----------------ccHHHHHHHHHCCCCceEEECCCCCCCcccchHhHHHHHHHHH---------HHhC
Confidence 76533211 11123456778886 569999964432 12222233333221 1246
Q ss_pred CCHHHHHHHHcHHHHHhcccCCccccccCCCcccEEEeCCCCCC----Chhh-----ccCCeEEEEEECCEEeCC
Q 008063 514 ISLTDALIAHTLSAARACFLENDVGSLSPGKIADFVILSTSSWE----DFAA-----EVSASIEATYVSGVQAYP 579 (579)
Q Consensus 514 ls~~~al~~~T~npA~~lgl~~~~G~I~~G~~ADlvvld~~~~~----~~~~-----~~~~~v~~v~v~G~~v~~ 579 (579)
++++++++++|.|||+++|++ .+|+|++|+.|||++++.+... ++.. .....|..||++||+||.
T Consensus 296 ~~~~~al~~aT~n~A~~lgl~-~~G~l~~G~~ADlvv~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~v~G~~~~~ 369 (380)
T PRK09237 296 MPLEEVIAAVTKNAADALRLP-ELGRLQVGSDADLTLFTLKDGPFTLTDSEGDSLIGERLLTPLATVRGGKVVLT 369 (380)
T ss_pred CCHHHHHHHHHHHHHHHcCCC-CCCcCCCCCcCCEEEEeCCCCCccccCCCCCEEEecCCCcceEEEECCEEEEc
Confidence 999999999999999999995 4899999999999999854322 2221 124699999999999974
|
|
| >PRK09061 D-glutamate deacylase; Validated | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.7e-25 Score=236.67 Aligned_cols=214 Identities=16% Similarity=0.162 Sum_probs=124.2
Q ss_pred CCHHHHHHHHHHHHHCCCeEEEEecchHH--HHHHHHHHHHHHHhcCCCCCCceEeeccCCCh-------hhHHHHhhCC
Q 008063 363 MELESLLSMTMASDKSGLQVAIHAIGDRA--NDLVLDMYKSVVVTTGKRDQRFRIEHAQHLAS-------GTAARFGDQG 433 (579)
Q Consensus 363 ~~~~~l~~~~~~a~~~g~~i~iH~~g~~~--~~~~~~~~~~~~~~~~~~~~~~~i~H~~~~~~-------~~~~~~~~~~ 433 (579)
.+.+++.++++.++++|.++.+|+..... .......+++........+.+.++.|+..... +.++++++.|
T Consensus 196 ~~~~eL~~l~~~A~~~g~~v~~H~e~~~~~~~~~e~~av~~~i~lA~~~G~rv~IsHlss~g~~~~~~~le~I~~Ar~~G 275 (509)
T PRK09061 196 TGHKEYLELARLAARAGVPTYTHVRYLSNVDPRSSVDAYQELIAAAAETGAHMHICHVNSTSLRDIDRCLALVEKAQAQG 275 (509)
T ss_pred CCHHHHHHHHHHHHHcCCEEEEEecCcccCCchhHHHHHHHHHHHHHHhCCCEEEEeeccCCcccHHHHHHHHHHHHHcC
Confidence 57889999999999999999999974321 01112222222222222345789999987432 3455566666
Q ss_pred --cEEEecccc--------cccchhHHHHh--------h---Chhh-h-------------------------hhhhhhH
Q 008063 434 --IVASMQPQH--------LLDDADSARKK--------L---GVDR-A-------------------------ERESYLF 466 (579)
Q Consensus 434 --i~~~~~p~~--------~~~~~~~~~~~--------l---~~~~-~-------------------------~~~~~~l 466 (579)
+++.++|.+ .....++.... + ++.. . ......+
T Consensus 276 i~Vt~e~~P~~~~~t~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 355 (509)
T PRK09061 276 LDVTTEAYPYGAGSTVVGAAFFDPGWLERMGLGYGSLQWVETGERLLTREELAKLRANDPGGLVLIHFLDEDNPRDRALL 355 (509)
T ss_pred CcEEEEecCcchhhhhhcccccCHHHHHHhCCCHHHheehhcccccCCHHHHHHHhccCCCCeEEEEeccCCCCccchhH
Confidence 466788888 22222222110 1 1100 0 0112234
Q ss_pred HHHHHCCCeeeecCCCCCCCCC----HHHHHHHHHcccC------CCCCCC---C-CCCCCCCHHHHHHHHcHHHHHhcc
Q 008063 467 QSLLANNALLALGSDWPVADIN----PLCAIRTAMKRIP------PGWDNA---W-IPSERISLTDALIAHTLSAARACF 532 (579)
Q Consensus 467 ~~l~~~Gi~v~~gsD~~~~~~~----~~~~~~~~~~~~~------~~~~~~---~-~~~~~ls~~~al~~~T~npA~~lg 532 (579)
....+.+.. +++||+....+. .+........... ..+... + .....+|++++++++|.+||++||
T Consensus 356 ~~~l~~p~~-~i~sD~~p~~~~~~~~~~~~~~~~~~~~~~h~r~~~~~~~~l~~~v~~~~~isl~~ai~~~T~~pA~~lg 434 (509)
T PRK09061 356 DRSVLFPGA-AIASDAMPWTWSDGTVYEGDAWPLPEDAVSHPRSAGTFARFLREYVRERKALSLLEAIRKCTLMPAQILE 434 (509)
T ss_pred HHHhCCCCc-eEecCCccccccccccccccccccccCCCCCchhhcchHHHHHHHHhhcccCCHHHHHHHHHHHHHHHhc
Confidence 555666655 999996321100 0000000000000 000000 0 122359999999999999999999
Q ss_pred -----cCCccccccCCCcccEEEeCCCCCCChhhcc-----CCeEEEEEECCEEeC
Q 008063 533 -----LENDVGSLSPGKIADFVILSTSSWEDFAAEV-----SASIEATYVSGVQAY 578 (579)
Q Consensus 533 -----l~~~~G~I~~G~~ADlvvld~~~~~~~~~~~-----~~~v~~v~v~G~~v~ 578 (579)
+++ .|+|++|+.|||||||.+.+.+.+.+. ...|..||++|++||
T Consensus 435 ~~~~~l~~-~G~i~~G~~ADlvv~D~~~~~~~~~~~~~~~~~~gi~~v~v~G~~v~ 489 (509)
T PRK09061 435 DSVPAMRR-KGRLQAGADADIVVFDPETITDRATFEDPNRPSEGVRHVLVNGVPVV 489 (509)
T ss_pred cccccccC-CEeeCCCCCcCEEEEchhhccccccccccCCCCCCceEEEECCEEEE
Confidence 865 699999999999999988654332221 235889999999986
|
|
| >COG1001 AdeC Adenine deaminase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.1e-25 Score=231.07 Aligned_cols=322 Identities=23% Similarity=0.318 Sum_probs=209.2
Q ss_pred CCCccEEEEcCeEEeCCCCCCeeeEEEEECCEEEE-ecChHHHHhhccCCCeEEeCCCCeeecccccccccccccCcccc
Q 008063 42 NLEADLVVTNGVIFTGDDSLLFADSMAIKNGRIVS-VGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHFIPGGLQMA 120 (579)
Q Consensus 42 ~~~~~~likn~~v~~~~~~~~~~~~v~I~~GkI~~-Ig~~~~~~~~~~~~~~viD~~g~~V~PG~ID~H~H~~~~~~~~~ 120 (579)
...+++++||++++|.-......++|.|.+|||+. +++.. +++.++||+.|+||+|||||.|+|.-.+..
T Consensus 21 ~~~adlv~~ng~ivdv~~gei~~~dIaI~~grI~~v~~~~~------~e~~~~iDa~g~yivPGfID~H~HIESSm~--- 91 (584)
T COG1001 21 RAKADLVLKNGRIVDVVTGEIYKGDIAIAGGRIVGVIGEYR------AEATEVIDAAGRYIVPGFIDAHLHIESSML--- 91 (584)
T ss_pred CCCCCEEEECCEEEEeeeccEEeeeEEEECCEEEEeecCcC------cccceeecCCCCEeccceeecceecccccc---
Confidence 56788999999999985545578899999999999 54432 267899999999999999999999743211
Q ss_pred ccccCCCCCHHHHHHHHHHHHHcCCCCCeEEEeCCCCCCCCCCCCChHHhhhhCCCCeEEEEeCCCchhhhcHHHHHHcC
Q 008063 121 RVKLRGVSHKDEFVRRVKEAVKNSKKGSWILGGGWNNDLWGGDLPMASWIDDITPHNPVWLSRMDGHMGLANSVALQLVG 200 (579)
Q Consensus 121 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~p~~~~ld~~~~~~p~~~~~~~~~~~~~n~~~~~~~g 200 (579)
+
T Consensus 92 ---------------------------------------------t---------------------------------- 92 (584)
T COG1001 92 ---------------------------------------------T---------------------------------- 92 (584)
T ss_pred ---------------------------------------------C----------------------------------
Confidence 1
Q ss_pred CCCCCCCCCCCeEEeCCCCCcCEEEhHhHHHHhcccCCCCCHHHHHHHHHHHHHHHHhcCccEEEeCCcCCCCCccccch
Q 008063 201 ITNLSEDPNGGTIMKTSSGEPTGLLIDAAMKLILPWIPEVSVDERREALLRASNLALSRGVTTVVDFGRYYPGESVQLSW 280 (579)
Q Consensus 201 ~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Git~v~~~~~~~~~~~~~~~~ 280 (579)
...+.+..+.+|+||+.. +...+.++
T Consensus 93 ------------------------------------------------P~~FA~~Vlp~GtTtvV~------DPHEIaNV 118 (584)
T COG1001 93 ------------------------------------------------PSEFARAVLPHGTTTVVS------DPHEIANV 118 (584)
T ss_pred ------------------------------------------------HHHHHHHhhccCceEEee------CcHHHHhh
Confidence 123667789999999876 33344455
Q ss_pred HHHHHHHHHHhhcCCCeeEEEEccCccchh-------------hHHHHHHhcCCCCCCceEEceEEEEEcCccCCCcccc
Q 008063 281 EDFADVYQWASYSEKMKIRVCLFFPLETWS-------------SLADLINKTGHVLSDWVYLGGVKAFADGSLGSNSALF 347 (579)
Q Consensus 281 ~~~~~~~~~~~~~~~~~i~v~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~g~k~~~dg~~~~~~~~~ 347 (579)
.....+.-.+.+....+++++.+.++-... ...++..+ -... +..-.|
T Consensus 119 ~G~~Gi~~ml~~a~~~pl~~~~~~pScVPat~~Et~Ga~l~a~~i~e~~~~--------p~Vi-----------gl~E~M 179 (584)
T COG1001 119 LGEDGIRFMLDEAKETPLKVYVMLPSCVPATPFETSGAELTAEDIKELLEH--------PEVI-----------GLGEMM 179 (584)
T ss_pred ccHHHHHHHHHHHhhCCeEEEEecccCccCCccccCCceecHHHHHHHhhC--------CCcc-----------chhhhc
Confidence 555566666667777899999876542211 11111111 0000 001111
Q ss_pred cCCCCCCCCCCcccCCCHHHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhcCCCCCCceEeeccCCChhhHH
Q 008063 348 HEPYADEPHNYGLQVMELESLLSMTMASDKSGLQVAIHAIGDRANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLASGTAA 427 (579)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~i~iH~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~H~~~~~~~~~~ 427 (579)
.-| +.. --++.+-.-++.+++.|.++..|+.|-.. ..+..|..+ -....|-...-+|.++
T Consensus 180 n~p--------gVi-~~D~~~l~kl~a~~~~~k~VdGHapgl~g--~~Ln~Y~aa---------Gi~tDHE~~t~EEa~~ 239 (584)
T COG1001 180 NFP--------GVI-EGDPDMLAKLEAARKAGKPVDGHAPGLSG--KELNAYIAA---------GISTDHESTTAEEALE 239 (584)
T ss_pred CCc--------hhc-cCCHHHHHHHHHHHHcCCeecccCCCCCh--HHHHHHHhc---------CCCcCcccCCHHHHHH
Confidence 111 111 12344555578899999999999986652 223333322 2244555554445455
Q ss_pred HHhhCCcEEEecccccccchhHHHHhhChhhhhhhhhhHHHHHHCCC-eeeecCCCCCCC-CCHHHHHHHHHcccCCCCC
Q 008063 428 RFGDQGIVASMQPQHLLDDADSARKKLGVDRAERESYLFQSLLANNA-LLALGSDWPVAD-INPLCAIRTAMKRIPPGWD 505 (579)
Q Consensus 428 ~~~~~~i~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~~Gi-~v~~gsD~~~~~-~~~~~~~~~~~~~~~~~~~ 505 (579)
++ +.|..+.+--.+...+.. ..++.+.+.|. +++++||..... .-.-..+...+++.
T Consensus 240 kl-r~Gm~i~iReGS~a~dl~---------------~l~~~i~e~~~~~~~lcTDD~~p~dl~~eGhld~~vR~A----- 298 (584)
T COG1001 240 KL-RLGMKIMIREGSAAKDLA---------------ALLPAITELGSRRVMLCTDDRHPDDLLEEGHLDRLVRRA----- 298 (584)
T ss_pred HH-hCCcEEEEEcCchhhhHH---------------HHHHHHhhcCCceEEEECCCCChhHhhhcCCHHHHHHHH-----
Confidence 54 568888777665542111 12345566775 799999964332 11111122233322
Q ss_pred CCCCCCCCCCHHHHHHHHcHHHHHhcccCCccccccCCCcccEEEeCCCCCCChhhccCCeEEEEEECCEEeC
Q 008063 506 NAWIPSERISLTDALIAHTLSAARACFLENDVGSLSPGKIADFVILSTSSWEDFAAEVSASIEATYVSGVQAY 578 (579)
Q Consensus 506 ~~~~~~~~ls~~~al~~~T~npA~~lgl~~~~G~I~~G~~ADlvvld~~~~~~~~~~~~~~v~~v~v~G~~v~ 578 (579)
-+.|++|.+|++|+|.|||+++|+++ +|.|+||+.||||+++ + +++.++..|+++|++|.
T Consensus 299 ----i~~Gv~p~~a~qmAtiN~A~~~gl~~-~G~iAPG~~ADlvi~~-----D---L~~~~v~~V~~~G~~v~ 358 (584)
T COG1001 299 ----IEEGVDPLDAYQMATINPAEHYGLDD-LGLIAPGRRADLVILE-----D---LRNFKVTSVLIKGRVVA 358 (584)
T ss_pred ----HHcCCCHHHHHHHHhcCHHHHcCCcc-cccccCCccccEEEEc-----c---cccCceeEEEECCEEEe
Confidence 34679999999999999999999998 9999999999999999 2 23558999999999985
|
|
| >TIGR01178 ade adenine deaminase | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.1e-24 Score=233.30 Aligned_cols=312 Identities=24% Similarity=0.300 Sum_probs=191.8
Q ss_pred cEEEEcCeEEeCCCCCCeeeEEEEECCEEEEecChHHHHhhccCCCeEEeCCCCeeecccccccccccccCccccccccC
Q 008063 46 DLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHFIPGGLQMARVKLR 125 (579)
Q Consensus 46 ~~likn~~v~~~~~~~~~~~~v~I~~GkI~~Ig~~~~~~~~~~~~~~viD~~g~~V~PG~ID~H~H~~~~~~~~~~~~~~ 125 (579)
+++|+|++|+++.+.....++|+|+||||++|++. .+.++||++|++|+|||||+|+|+..+..
T Consensus 1 dlli~n~~ivd~~~~~~~~~dI~I~~g~I~~ig~~--------~~~~viDa~G~~v~PG~ID~H~Hi~~~~~-------- 64 (552)
T TIGR01178 1 DIVIKNAKIIDVYNGEIIPGDIAIANGHIAGVGKY--------NGVKVIDALGEYAVPGFIDAHIHIESSML-------- 64 (552)
T ss_pred CEEEEeeEEEeCCCCcEEeeeEEEECCEEEEecCC--------CCCeEEECCCCEEEeCeEecccccCCCCC--------
Confidence 47899999999766555667999999999999863 23589999999999999999999843211
Q ss_pred CCCCHHHHHHHHHHHHHcCCCCCeEEEeCCCCCCCCCCCCChHHhhhhCCCCeEEEEeCCCchhhhcHHHHHHcCCCCCC
Q 008063 126 GVSHKDEFVRRVKEAVKNSKKGSWILGGGWNNDLWGGDLPMASWIDDITPHNPVWLSRMDGHMGLANSVALQLVGITNLS 205 (579)
Q Consensus 126 ~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~p~~~~ld~~~~~~p~~~~~~~~~~~~~n~~~~~~~g~~~~~ 205 (579)
T Consensus 65 -------------------------------------------------------------------------------- 64 (552)
T TIGR01178 65 -------------------------------------------------------------------------------- 64 (552)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCeEEeCCCCCcCEEEhHhHHHHhcccCCCCCHHHHHHHHHHHHHHHHhcCccEEEeCCcCCCCCccccchHHHHH
Q 008063 206 EDPNGGTIMKTSSGEPTGLLIDAAMKLILPWIPEVSVDERREALLRASNLALSRGVTTVVDFGRYYPGESVQLSWEDFAD 285 (579)
Q Consensus 206 ~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Git~v~~~~~~~~~~~~~~~~~~~~~ 285 (579)
+++ .+.+.++..|+|++.+.....++. ...+.+..
T Consensus 65 -----------------------------------~~~-------~~~~~al~~GvTtvv~~P~~~~~v---~g~~~~~~ 99 (552)
T TIGR01178 65 -----------------------------------TPS-------EFAKLVLPHGVTTVVSDPHEIANV---NGEDGINF 99 (552)
T ss_pred -----------------------------------Chh-------HHHHHHHCCCEEEEEcCCCCCCCC---CCHHHHHH
Confidence 000 023457999999999864322221 12223322
Q ss_pred HHHHHhhcCCCeeEEEEccCcc-------------chhhHHHHHHhcCCCCCCceEEceEEEEEcCccCCCcccccCCCC
Q 008063 286 VYQWASYSEKMKIRVCLFFPLE-------------TWSSLADLINKTGHVLSDWVYLGGVKAFADGSLGSNSALFHEPYA 352 (579)
Q Consensus 286 ~~~~~~~~~~~~i~v~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~g~k~~~dg~~~~~~~~~~~~~~ 352 (579)
..+ .....+++++...+.- +.++..++..+ -...|+|.+.+- |
T Consensus 100 ~~~---~a~~~~~d~~~~~~s~vp~~~~e~~g~~~~~~~i~~~~~~--------~~V~glke~m~~-----------~-- 155 (552)
T TIGR01178 100 MLN---NAKKTPLNFYFMLPSCVPALQFETSGAVLTAEDIDELMEL--------DEVLGLAEVMDY-----------P-- 155 (552)
T ss_pred HHH---HhhcCCcEEEEECCCCCCCCcccCCCCccCHHHHHHHHcC--------CCccEEEEEecc-----------h--
Confidence 332 2234577776655531 11122222111 123345544311 0
Q ss_pred CCCCCCcccCCCHHHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhcCCCCCCceEeeccCCChhhHHHHhhC
Q 008063 353 DEPHNYGLQVMELESLLSMTMASDKSGLQVAIHAIGDRANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLASGTAARFGDQ 432 (579)
Q Consensus 353 ~~~~~~~~~~~~~~~l~~~~~~a~~~g~~i~iH~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~H~~~~~~~~~~~~~~~ 432 (579)
+. ...++.+.+.++.+++.|..+..|+.+-. ...+..+.. . .....|+....++ ...-...
T Consensus 156 ------~v-~~~d~~~l~~i~~a~~~g~~I~gHap~l~--~~eL~~~~~----a-----Gi~~dHe~~s~~e-a~e~~~~ 216 (552)
T TIGR01178 156 ------GV-INADIEMLNKINSARKRNKVIDGHCPGLS--GKLLNKYIS----A-----GISNDHESTSIEE-AREKLRL 216 (552)
T ss_pred ------hh-cCCCHHHHHHHHHHHhCCCEEEecCCCCC--HHHHHHHHH----c-----CCCCCcCcCCHHH-HHHHHHC
Confidence 00 01233444445888999999999986332 222222221 1 2356676554444 4444456
Q ss_pred CcEEEecccccccchhHHHHhhChhhhhhhhhhHHHHHHCCCeeeecCCCCCCCCCHH------HHHHHHHcccCCCCCC
Q 008063 433 GIVASMQPQHLLDDADSARKKLGVDRAERESYLFQSLLANNALLALGSDWPVADINPL------CAIRTAMKRIPPGWDN 506 (579)
Q Consensus 433 ~i~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD~~~~~~~~~------~~~~~~~~~~~~~~~~ 506 (579)
|..+.+.-.+...+.+ ...++... +.+.+++++||. ..+.+++ ..++.++.
T Consensus 217 Gm~~~ir~gs~~~n~~-------------~~~~~~~~-~~~~~~~l~TD~-~~~~~~~~~g~l~~~v~~ai~-------- 273 (552)
T TIGR01178 217 GMKLMIREGSAAKNLE-------------ALHPLINE-KNCRSLMLCTDD-RHVNDILNEGHINHIVRRAIE-------- 273 (552)
T ss_pred CCEEEEeCCccccCHH-------------HHHHHHhh-cCCceEEEEeCC-CChhHHHhcCCHHHHHHHHHH--------
Confidence 7777765554432211 11111111 366899999994 2233333 34444432
Q ss_pred CCCCCCCCCHHHHHHHHcHHHHHhcccCCccccccCCCcccEEEeCCCCCCChhhccCCeEEEEEECCEEeC
Q 008063 507 AWIPSERISLTDALIAHTLSAARACFLENDVGSLSPGKIADFVILSTSSWEDFAAEVSASIEATYVSGVQAY 578 (579)
Q Consensus 507 ~~~~~~~ls~~~al~~~T~npA~~lgl~~~~G~I~~G~~ADlvvld~~~~~~~~~~~~~~v~~v~v~G~~v~ 578 (579)
.++++++|++|+|.|||+++|+++ .|+|+||+.||||+++.. ...++..||++|++|.
T Consensus 274 -----~g~~~~~Al~maT~npA~~lgl~~-~G~I~pG~~ADlvvl~~l--------~~~~v~~v~~~G~~v~ 331 (552)
T TIGR01178 274 -----HGVDPFDALQMASINPAEHFGIDV-GGLIAPGDPADFVILKDL--------RNFKVNKTYVKGKLLD 331 (552)
T ss_pred -----cCCCHHHHHHHHHHHHHHHcCCCC-CcccCCCCcCCEEEECCC--------CCceEEEEEECCEEEc
Confidence 359999999999999999999986 799999999999999931 1347999999999875
|
The family described by this model includes an experimentally characterized adenine deaminase of Bacillus subtilis. It also include a member from Methanobacterium thermoautotrophicum, in which adenine deaminase activity has been detected. |
| >TIGR00857 pyrC_multi dihydroorotase, multifunctional complex type | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.3e-24 Score=227.96 Aligned_cols=216 Identities=17% Similarity=0.157 Sum_probs=136.0
Q ss_pred CCHHHHHHHHHHHHHCCCeEEEEecchHHHHH---------------------HHHHHHHHHHhcCCCCCCceEeeccCC
Q 008063 363 MELESLLSMTMASDKSGLQVAIHAIGDRANDL---------------------VLDMYKSVVVTTGKRDQRFRIEHAQHL 421 (579)
Q Consensus 363 ~~~~~l~~~~~~a~~~g~~i~iH~~g~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~i~H~~~~ 421 (579)
.+++.+.++++.++++|+++.+|+....-... ...+..+.....-..+.+.++.|....
T Consensus 144 ~~~~~l~~~~~~a~~~g~~v~iH~E~~~l~~~~~~~~g~~~~~~~~~~~p~~aE~~ai~~~~~la~~~~~~~~i~Hvs~~ 223 (411)
T TIGR00857 144 QDILSMRRALEYAAIAGVPIALHAEDPDLIYGGVMHEGPSAAQLGLPARPPEAEEVAVARLLELAKHAGCPVHICHISTK 223 (411)
T ss_pred CCHHHHHHHHHHHHHcCCEEEEecCCHHHHhhhhhcCCcccHhhCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEeCCCH
Confidence 46789999999999999999999863321110 001111111111112457888898763
Q ss_pred Ch-hhHHHHhhCC--cEEEecccccccchhHHHH------hhChhhhhhhhhhHHHHHHCCCeeeecCCCCCCCC-CH--
Q 008063 422 AS-GTAARFGDQG--IVASMQPQHLLDDADSARK------KLGVDRAERESYLFQSLLANNALLALGSDWPVADI-NP-- 489 (579)
Q Consensus 422 ~~-~~~~~~~~~~--i~~~~~p~~~~~~~~~~~~------~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD~~~~~~-~~-- 489 (579)
.. +.+...++.| +++.+||++...+.+.+.. ..+|.|.++....+...+++|...+++||...... ..
T Consensus 224 ~~l~~i~~a~~~g~~v~~ev~ph~L~~~~~~~~~~~~~~k~~Pplr~~~~~~~L~~~l~~g~i~~i~sDh~p~~~~~k~~ 303 (411)
T TIGR00857 224 ESLELIVKAKSQGIKITAEVTPHHLLLSEEDVARLDGNGKVNPPLREKEDRLALIEGLKDGIIDIIATDHAPHTLEEKTK 303 (411)
T ss_pred HHHHHHHHHHHcCCcEEEeechhhheecHHHHhCCCccEEEcCCCCCHHHHHHHHHHHhcCCCcEEEcCCCCCChHHccC
Confidence 32 3344445554 7889999998766655432 34555655667778899999999999999653321 00
Q ss_pred -HHHHHHHHcccCCCCCCC--CCCCCCCCHHHHHHHHcHHHHHhcccCCccccccCCCcccEEEeCCCCC-C-Chhhcc-
Q 008063 490 -LCAIRTAMKRIPPGWDNA--WIPSERISLTDALIAHTLSAARACFLENDVGSLSPGKIADFVILSTSSW-E-DFAAEV- 563 (579)
Q Consensus 490 -~~~~~~~~~~~~~~~~~~--~~~~~~ls~~~al~~~T~npA~~lgl~~~~G~I~~G~~ADlvvld~~~~-~-~~~~~~- 563 (579)
+.....++.......... +..+.+++++++++++|.|||+.+|++++ |+|++|+.|||+++|.+.. . +.+++.
T Consensus 304 ~~~~~~~G~~g~e~~~~~~~~~~~~~~~~~~~~~~~~t~~pa~~~g~~~~-G~l~~G~~ADlvi~d~~~~~~~~~~~~~~ 382 (411)
T TIGR00857 304 EFAAAPPGIPGLETALPLLLQLLVKGLISLKDLIRMLSINPARIFGLPDK-GTLEEGNPADITVFDLKKEWTINAETFYS 382 (411)
T ss_pred CHhhCCCCceeHHHHHHHHHHHHHhCCCCHHHHHHHHhHHHHHHhCCCCC-CccCCCCcCCEEEEcCCCCEEEchHHCcc
Confidence 100000000000000000 01233699999999999999999999764 9999999999999997752 1 111111
Q ss_pred ------------CCeEEEEEECCEEeCC
Q 008063 564 ------------SASIEATYVSGVQAYP 579 (579)
Q Consensus 564 ------------~~~v~~v~v~G~~v~~ 579 (579)
..+|..|+++|++||.
T Consensus 383 ~~~~sp~~g~~~~g~v~~tiv~G~~v~~ 410 (411)
T TIGR00857 383 KAKNTPFEGMSLKGKPIATILRGKVVYE 410 (411)
T ss_pred CCCCCCcCCCEEEeEEEEEEECCEEEec
Confidence 2379999999999973
|
All proteins described by this model should represent active and inactive dihydroorotase per se and functionally equivalent domains of multifunctional proteins from higher eukaryotes, but exclude related proteins such as allantoinase. |
| >PRK01211 dihydroorotase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.9e-24 Score=224.16 Aligned_cols=158 Identities=15% Similarity=0.061 Sum_probs=103.4
Q ss_pred CceEeeccCCChhhHHHHhhCCcEEEecccccccchhH----HHHhhChhhhhhhhhhHHHHHHCCCeeeecCCCCCCCC
Q 008063 412 RFRIEHAQHLASGTAARFGDQGIVASMQPQHLLDDADS----ARKKLGVDRAERESYLFQSLLANNALLALGSDWPVADI 487 (579)
Q Consensus 412 ~~~i~H~~~~~~~~~~~~~~~~i~~~~~p~~~~~~~~~----~~~~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD~~~~~~ 487 (579)
+.++.|...-. .+ ..+++.+||++...+.+. ..+..+|.|..+....+.+.+..|....++||.+....
T Consensus 209 ~~hi~HvSt~~--~~-----~~vt~Ev~phhL~l~~~~~~~~~~kvnPPLRs~~d~~aL~~~l~dG~ID~i~SDHaP~~~ 281 (409)
T PRK01211 209 TKIIAHVSSID--VI-----GRFLREVTPHHLLLNDDMPLGSYGKVNPPLRDRWTQERLLEEYISGRFDILSSDHAPHTE 281 (409)
T ss_pred CcEEEEecChh--hc-----CceEEEecHHHHccccccccCCceeEcCCCCCHHHHHHHHHHHhCCCCCEEeCCCCCCCh
Confidence 56777776522 12 378999999998765432 22345666766777788899999999999999764321
Q ss_pred CHHHHHHHHHccc---CCCCCCC--CCCCCCCCHHHHHHHHcHHHHHhcccCCccccccCCCcccEEEeCCCCC-C----
Q 008063 488 NPLCAIRTAMKRI---PPGWDNA--WIPSERISLTDALIAHTLSAARACFLENDVGSLSPGKIADFVILSTSSW-E---- 557 (579)
Q Consensus 488 ~~~~~~~~~~~~~---~~~~~~~--~~~~~~ls~~~al~~~T~npA~~lgl~~~~G~I~~G~~ADlvvld~~~~-~---- 557 (579)
.....++.+..+. ....... +..+.++|++++++++|.|||+.+|++ +|+|++|+.|||||+|.+.. .
T Consensus 282 ~eK~~~~~a~~G~~gle~~lpl~~~~v~~~~isl~~~v~~~s~nPAki~gl~--kG~l~~G~~ADlvi~D~~~~~~v~~~ 359 (409)
T PRK01211 282 EDKQEFEYAKSGIIGVETRVPLFLALVKKKILPLDVLYKTAIERPASLFGIK--KGKIEEGYDADFMAFDFTNIKKINDK 359 (409)
T ss_pred hHhCCHhhCCCCCCcHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhCCC--CCcccCCCcCCEEEEcCCCeEEEChH
Confidence 1100000000000 0000000 113556999999999999999999994 59999999999999997632 1
Q ss_pred ---------ChhhccCCeEEEEEECCEEeC
Q 008063 558 ---------DFAAEVSASIEATYVSGVQAY 578 (579)
Q Consensus 558 ---------~~~~~~~~~v~~v~v~G~~v~ 578 (579)
++....-.++..|+++|++||
T Consensus 360 ~~~s~~~~spf~G~~~~~v~~tiv~G~~v~ 389 (409)
T PRK01211 360 RLHSKCPVSPFNGFDAIFPSHVIMRGEVVI 389 (409)
T ss_pred HhhccCCCCCCCCCEeccEEEEEECCEEEE
Confidence 111111117999999999986
|
|
| >PRK10027 cryptic adenine deaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=2e-23 Score=223.33 Aligned_cols=164 Identities=21% Similarity=0.197 Sum_probs=107.9
Q ss_pred CCHHHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhcCCCCCCceEeeccCCChhhHHHHhhCCcEEEecccc
Q 008063 363 MELESLLSMTMASDKSGLQVAIHAIGDRANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLASGTAARFGDQGIVASMQPQH 442 (579)
Q Consensus 363 ~~~~~l~~~~~~a~~~g~~i~iH~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~H~~~~~~~~~~~~~~~~i~~~~~p~~ 442 (579)
-+++.+.++. .+ .+..+..|+.+-.. ..+.+|..+ | ....|.....++.++++ +.|..+.+.-.+
T Consensus 195 ~d~~~~~ki~-~~--~~~~idGH~p~l~g--~~L~ay~aa----G-----i~sDHE~~t~eea~ekl-r~Gm~v~iRegS 259 (588)
T PRK10027 195 GQNALLDKLD-AF--RHLTLDGHCPGLGG--KELNAYIAA----G-----IENCHESYQLEEGRRKL-QLGMSLMIREGS 259 (588)
T ss_pred CCHHHHHHHH-Hh--CCCceECCCCCCCh--HHHHHHHHc----C-----CCCCcccCCHHHHHHHH-HCCCEEEEeCCc
Confidence 3566666666 33 88899999975542 333444322 2 24456555445555555 458888888776
Q ss_pred cccchhHHHHhhChhhhhhhhhhHHHHH-HCC-CeeeecCCCCCCC-----CCHHHHHHHHHcccCCCCCCCCCCCCCCC
Q 008063 443 LLDDADSARKKLGVDRAERESYLFQSLL-ANN-ALLALGSDWPVAD-----INPLCAIRTAMKRIPPGWDNAWIPSERIS 515 (579)
Q Consensus 443 ~~~~~~~~~~~l~~~~~~~~~~~l~~l~-~~G-i~v~~gsD~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~ls 515 (579)
...+.+ .+..+. +.+ -+++++||..... -.....++.++. ..|++
T Consensus 260 ~~~nl~----------------~l~~~~~~~~~~~~~l~TDd~~~~~l~~~Ghi~~~vr~av~------------~~Gi~ 311 (588)
T PRK10027 260 AARNLN----------------ALAPLINEFNSPQCMLCTDDRNPWEIAHEGHIDALIRRLIE------------QHNVP 311 (588)
T ss_pred cccCHH----------------HHHHHhhccCCCeEEEEcCCCChHHHHhccCHHHHHHHHHH------------HcCCC
Confidence 553322 222222 222 3689999974321 112234444442 35799
Q ss_pred HHHHHHHHcHHHHHhcccCCccccccCCCcccEEEeCCCCCCChhhccCCeEEEEEECCEEeC
Q 008063 516 LTDALIAHTLSAARACFLENDVGSLSPGKIADFVILSTSSWEDFAAEVSASIEATYVSGVQAY 578 (579)
Q Consensus 516 ~~~al~~~T~npA~~lgl~~~~G~I~~G~~ADlvvld~~~~~~~~~~~~~~v~~v~v~G~~v~ 578 (579)
+++|++|+|.|||+++|+++ +|+|+||+.|||+++|... ..++..||++|++|+
T Consensus 312 ~~~Ai~mAT~nPA~~lgl~d-~G~IapG~~ADlvvld~l~--------~~~v~~v~~~G~~v~ 365 (588)
T PRK10027 312 LHVAYRVASWSTARHFGLNH-LGLLAPGKQADIVLLSDAR--------KVTVQQVLVKGEPID 365 (588)
T ss_pred HHHHHHHHHHHHHHHcCCCC-CcccCCCCcCCEEEEccCC--------CceEEEEEECCEEee
Confidence 99999999999999999986 7999999999999999531 237999999999886
|
|
| >cd01304 FMDH_A Formylmethanofuran dehydrogenase (FMDH) subunit A; Methanogenic bacteria and archea derive the energy for autotrophic growth from methanogenesis, the reduction of CO2 with molecular hydrogen as the electron donor | Back alignment and domain information |
|---|
Probab=99.92 E-value=6.2e-23 Score=213.31 Aligned_cols=110 Identities=17% Similarity=0.049 Sum_probs=77.6
Q ss_pred HHHHCCCeeeecCCCCCCC--CCHHHHHHHHHcccCCC------------CCCCCCCCCCCCHHHHHHHHcHHHHHhccc
Q 008063 468 SLLANNALLALGSDWPVAD--INPLCAIRTAMKRIPPG------------WDNAWIPSERISLTDALIAHTLSAARACFL 533 (579)
Q Consensus 468 ~l~~~Gi~v~~gsD~~~~~--~~~~~~~~~~~~~~~~~------------~~~~~~~~~~ls~~~al~~~T~npA~~lgl 533 (579)
.+.+.--++.++||.|... .....-++..|.+..+. ....-.-+..+|++++++++|.|||+.||+
T Consensus 367 ll~~dp~~~~~tTDhPn~gpf~~YP~~i~~lm~~~~r~~~~~~~~~~~~~~~~l~~~~reLSLeei~~mtT~nPAKiLGL 446 (541)
T cd01304 367 LLIDDPWKVILTTDHPNGGPFTRYPRIIAWLMSKKFRAEEIATLHKWAQDRSALPGIDREYSLYEIAIMTRAGPAKLLGL 446 (541)
T ss_pred HHhCCcceEEeecCCCCCCCcccHHHHHHHHhCHHHHHHHHHhcCHHHHhhccccCCCCCCCHHHHHHHHHHHHHHHhCC
Confidence 3444555899999998776 34444555555332110 001112345689999999999999999999
Q ss_pred CCccccccCCCcccEEEeCCCCCC-Chhhcc-----CCeEEEEEECCEEeC
Q 008063 534 ENDVGSLSPGKIADFVILSTSSWE-DFAAEV-----SASIEATYVSGVQAY 578 (579)
Q Consensus 534 ~~~~G~I~~G~~ADlvvld~~~~~-~~~~~~-----~~~v~~v~v~G~~v~ 578 (579)
++ +|+|++|+.|||+|+|.++.. +.+++. ..+|..||++|++|+
T Consensus 447 ~~-kG~L~~G~~ADLvIfD~n~~~v~~~dl~s~~~~~gkV~~Tiv~GkvVv 496 (541)
T cd01304 447 SD-KGHLGVGADADIAIYDDDPDQVDPSDYEKVEKAFSRAAYVLKDGEIVV 496 (541)
T ss_pred CC-CCccCCCCcCCEEEEeCCcCccCchhhcCceeecCcEEEEEECCEEEE
Confidence 74 699999999999999988653 222221 348999999999986
|
FMDH catalyzes the first step in methanogenesis, the formyl-methanofuran synthesis. In this step, CO2 is bound to methanofuran and subsequently reduced to the formyl state with electrons derived from hydrogen. |
| >PRK04250 dihydroorotase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.6e-23 Score=217.50 Aligned_cols=158 Identities=16% Similarity=0.201 Sum_probs=100.9
Q ss_pred CCCceEeeccCCChhhHHHHhhCC---cEEEecccccccchhHHH-----HhhChhhhhhhhhhHHHHHHCCCeeeecCC
Q 008063 410 DQRFRIEHAQHLASGTAARFGDQG---IVASMQPQHLLDDADSAR-----KKLGVDRAERESYLFQSLLANNALLALGSD 481 (579)
Q Consensus 410 ~~~~~i~H~~~~~~~~~~~~~~~~---i~~~~~p~~~~~~~~~~~-----~~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD 481 (579)
+.+.++.|... .+.++.+++.| +++.+||++...+.+.+. +..+|.|..+....+...+.. ...++||
T Consensus 197 ~~~lhi~HvSt--~~~~~~i~~~g~~~vt~Ev~ph~L~l~~~~~~~~~~~k~~PPLR~~~d~~aL~~~l~~--Id~i~sD 272 (398)
T PRK04250 197 KKPLHICHIST--KDGLKLILKSNLPWVSFEVTPHHLFLTRKDYERNPLLKVYPPLRSEEDRKALWENFSK--IPIIASD 272 (398)
T ss_pred CCCEEEEeCCC--HHHHHHHHHcCCCcEEEEeCHHHhccCHHHHCCCCceEEcCCCCCHHHHHHHHHhhcc--CCEEEcC
Confidence 45788888765 44445555443 788999999987666541 233445544444445555543 7889999
Q ss_pred CCCCC-------CCHHHHHHHHHcccCCCCCCCCCCCCCCCHHHHHHHHcHHHHHhcccCCccccccCCCcccEEEeCCC
Q 008063 482 WPVAD-------INPLCAIRTAMKRIPPGWDNAWIPSERISLTDALIAHTLSAARACFLENDVGSLSPGKIADFVILSTS 554 (579)
Q Consensus 482 ~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~npA~~lgl~~~~G~I~~G~~ADlvvld~~ 554 (579)
.+... +..+..+...+.-.. .+..+.+++++++++++|.|||+.||+++ .| |++|+.|||+|+|.+
T Consensus 273 HaP~~~~~k~~~~~G~~g~e~~lpl~~-----~~v~~~~lsl~~~v~~~t~npAk~lgl~~-~G-L~~G~~ADlvi~D~~ 345 (398)
T PRK04250 273 HAPHTLEDKEAGAAGIPGLETEVPLLL-----DAANKGMISLFDIVEKMHDNPARIFGIKN-YG-IEEGNYANFAVFDMK 345 (398)
T ss_pred CcccCHHHhhcCCCCcchHHHHHHHHH-----HHHHhcCCCHHHHHHHHHHHHHHHhCCCC-cC-ccCCCcCCEEEEcCC
Confidence 75432 111111111111000 01134469999999999999999999965 69 999999999999976
Q ss_pred C-C-------------CChhhc-cCCeEEEEEECCEEeC
Q 008063 555 S-W-------------EDFAAE-VSASIEATYVSGVQAY 578 (579)
Q Consensus 555 ~-~-------------~~~~~~-~~~~v~~v~v~G~~v~ 578 (579)
. + .++... ...+|..||++|++||
T Consensus 346 ~~~~v~~~~~~s~~~~sp~~g~~l~g~v~~tiv~G~~v~ 384 (398)
T PRK04250 346 KEWTIKAEELYTKAGWTPYEGFKLKGKVIMTILRGEVVM 384 (398)
T ss_pred CcEEEChhhccccCCCCCCCCCEEeeEEEEEEECCEEEE
Confidence 3 1 111111 1458999999999987
|
|
| >KOG2584 consensus Dihydroorotase and related enzymes [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.7e-25 Score=218.03 Aligned_cols=413 Identities=18% Similarity=0.217 Sum_probs=240.7
Q ss_pred ccEEEEcCeEEeCCCCCCeeeEEEEECCEEEEecChHHHHhhccCCCeEEeCCCCeeecccccccccccccCcccccccc
Q 008063 45 ADLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHFIPGGLQMARVKL 124 (579)
Q Consensus 45 ~~~likn~~v~~~~~~~~~~~~v~I~~GkI~~Ig~~~~~~~~~~~~~~viD~~g~~V~PG~ID~H~H~~~~~~~~~~~~~ 124 (579)
..++|||++|++-+.. ...||+++||.|.+|+++..+ +.+.++||++|++|+||.||.|+|+- ..+
T Consensus 14 ~rllikgg~vvN~d~~--~~aDV~vedGiI~~vg~~l~i----pgg~~~ida~g~~ViPGgID~Hthlq--------~p~ 79 (522)
T KOG2584|consen 14 NRLLIKGGRVVNDDQS--FKADVYVEDGIIKEVGENLII----PGGVKVIDATGKMVIPGGIDPHTHLQ--------MPF 79 (522)
T ss_pred cceeeeCCEEEccCCc--eeeeEEeccCEEEEecccEEc----CCCceEEecCCcEEecCccCccceec--------ccc
Confidence 4599999999987654 567999999999999998554 47899999999999999999999973 356
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCCCeEEEeCCCCCCCCCCCCChHHhhhhCCCCeEE-EEeCCCchhhhcHHHHHHcCCCC
Q 008063 125 RGVSHKDEFVRRVKEAVKNSKKGSWILGGGWNNDLWGGDLPMASWIDDITPHNPVW-LSRMDGHMGLANSVALQLVGITN 203 (579)
Q Consensus 125 ~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~p~~~~ld~~~~~~p~~-~~~~~~~~~~~n~~~~~~~g~~~ 203 (579)
.|.++.+++.++.+++.+. .. --.+|...|+.+.- +..+.-...++..+.-+..|++.
T Consensus 80 ~G~ts~DdF~~GTkAAlaG----Gt-----------------TmiID~vlp~~~~slv~afe~wr~~Ad~k~cCDyglhv 138 (522)
T KOG2584|consen 80 MGMTSVDDFFQGTKAALAG----GT-----------------TMIIDFVLPDKGTSLVEAFEKWREWADPKVCCDYGLHV 138 (522)
T ss_pred CCccchhhhhcccHHHhcC----Cc-----------------eEEEEEecCCCCchHHHHHHHHHhhcCCceeeeeeeeE
Confidence 7889999999999999761 00 01123333332211 11111122222222222222221
Q ss_pred CCCCCCCCeEEeCCCCCcCEEEhHhHHHHhcccCCCCCHHHHHHHHHHHHHHHHhcCccEEEeCCcCCCCCccccchHHH
Q 008063 204 LSEDPNGGTIMKTSSGEPTGLLIDAAMKLILPWIPEVSVDERREALLRASNLALSRGVTTVVDFGRYYPGESVQLSWEDF 283 (579)
Q Consensus 204 ~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Git~v~~~~~~~~~~~~~~~~~~~ 283 (579)
+.. .+. ..+.+.+..-. ...|+-+|.-+..| -.-+.-.-+++
T Consensus 139 ~It-----------------------------~W~----~~v~eem~~l~---~ekGvnsF~~fmay--k~~~~v~d~~l 180 (522)
T KOG2584|consen 139 GIT-----------------------------WWS----PSVKEEMEILV---KEKGVNSFKFFMAY--KDLYMVRDSEL 180 (522)
T ss_pred eee-----------------------------ecC----cchHHHHHHHh---hhcCcceEEeeeee--ccccccCHHHH
Confidence 110 111 11122221111 45688777665432 22223334455
Q ss_pred HHHHHHHhhcCCCeeEEEEccCccchhhHHHHHHhcCCCCCCceEEceEEEEEcCccCCCcccccCCCCCCCCCCcccCC
Q 008063 284 ADVYQWASYSEKMKIRVCLFFPLETWSSLADLINKTGHVLSDWVYLGGVKAFADGSLGSNSALFHEPYADEPHNYGLQVM 363 (579)
Q Consensus 284 ~~~~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~k~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (579)
.+.+..+++.+.+ .+++. ++-+-..+..+ +++..|..+..+..+..|.. +
T Consensus 181 ye~l~~~~~lgal-a~vHA----Engd~iae~q~---------------~~l~~gitgPEgh~lSRPee----------~ 230 (522)
T KOG2584|consen 181 YEALKVCAELGAL-AMVHA----ENGDAIAEGQQ---------------RLLELGITGPEGHELSRPEE----------L 230 (522)
T ss_pred HHHHHHHhhcchh-heehh----hcchhhhhhhh---------------HHHHcCCcCcccccccCchh----------h
Confidence 5666665554443 22221 11111111110 11112222222333333333 5
Q ss_pred CHHHHHHHHHHHHHCCCeE-EEEecchHHHHHHHHHHHHHHHhcCCCCCCceEeeccCCChhhHHHHhhCCcEEEecccc
Q 008063 364 ELESLLSMTMASDKSGLQV-AIHAIGDRANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLASGTAARFGDQGIVASMQPQH 442 (579)
Q Consensus 364 ~~~~l~~~~~~a~~~g~~i-~iH~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~H~~~~~~~~~~~~~~~~i~~~~~p~~ 442 (579)
+.|...+.+..|++.+.|+ .+|.....+.+.+..+-++.....+............+...+++... ...+++|..
T Consensus 231 EaEA~~rai~ia~~~ncPlyvvhVmsksaa~~Ia~aRk~g~~v~gepita~l~~dg~hy~~~~w~~A----a~~v~sPPl 306 (522)
T KOG2584|consen 231 EAEATNRAITIARQANCPLYVVHVMSKSAADAIALARKKGRVVFGEPITASLGTDGSHYWSKDWDHA----AAFVTSPPL 306 (522)
T ss_pred hHHHHHHHHHHHHhcCCCcceEEEeehhHHHHHHHHHhcCceeecccchhhhcccchhhccCChhhc----ceeeeCCCC
Confidence 6788899999999999997 67877665555544443332222221111111111122222333222 334555554
Q ss_pred cccchhHHHHhhChhhhhhhhhhHHHHHHCCCeeeecCCCCCCC-------CCHHHHHHHHHcccCCCCCCCCC---CCC
Q 008063 443 LLDDADSARKKLGVDRAERESYLFQSLLANNALLALGSDWPVAD-------INPLCAIRTAMKRIPPGWDNAWI---PSE 512 (579)
Q Consensus 443 ~~~~~~~~~~~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~---~~~ 512 (579)
... + .+...+..++..|..=..|||.+... -+-|..+..+++....+.+..|. ...
T Consensus 307 r~d---------~-----~t~~~L~~lLa~g~L~~tgSdhctf~~~qKalgKddFt~ip~GvnGvedrMsviwekgv~~G 372 (522)
T KOG2584|consen 307 RPD---------P-----TTPDGLMDLLAEGDLQLTGSDHCTFTTEQKALGKDDFTKIPNGVNGVEDRMSVIWEKGVHSG 372 (522)
T ss_pred CCC---------C-----CCHHHHHHHHhcCccceeecCCCCCCHHHHhhccCccccCCCccccccccceeeeehhcccC
Confidence 321 0 12334678899999989999976442 34455556666666555555554 355
Q ss_pred CCCHHHHHHHHcHHHHHhcccCCccccccCCCcccEEEeCCCCCCCh--------------hhcc-CCeEEEEEECCEEe
Q 008063 513 RISLTDALIAHTLSAARACFLENDVGSLSPGKIADFVILSTSSWEDF--------------AAEV-SASIEATYVSGVQA 577 (579)
Q Consensus 513 ~ls~~~al~~~T~npA~~lgl~~~~G~I~~G~~ADlvvld~~~~~~~--------------~~~~-~~~v~~v~v~G~~v 577 (579)
.+++.+.+...++|.|+++++..++|+|++|++||+||||.+....+ +... ...++-|+..||+|
T Consensus 373 ~md~~~fVavtstnaAkifnlYprKGrIavGsDADiVIwdp~at~tIS~~th~~~~d~NifEGm~~~G~plvtIsrGriv 452 (522)
T KOG2584|consen 373 KMDENRFVAVTSTNAAKIFNLYPRKGRIAVGSDADIVIWDPNATKTISAKTHHSANDFNIFEGMTVHGVPLVTISRGRVV 452 (522)
T ss_pred ccCcccEEEEecccchhheeccCcCceecccCCCcEEEECCCcceEeccccccccccceeecCcEecceeEEEEeCCeEE
Confidence 68899999999999999999999999999999999999998863311 1111 56889999999999
Q ss_pred C
Q 008063 578 Y 578 (579)
Q Consensus 578 ~ 578 (579)
|
T Consensus 453 ~ 453 (522)
T KOG2584|consen 453 Y 453 (522)
T ss_pred E
Confidence 7
|
|
| >TIGR03121 one_C_dehyd_A formylmethanofuran dehydrogenase subunit A | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.3e-22 Score=212.00 Aligned_cols=109 Identities=18% Similarity=0.121 Sum_probs=74.2
Q ss_pred HHHCCCeeeecCCCCCCC--CCHHHHHHHHHcccCC------------CCCCCCCCCCCCCHHHHHHHHcHHHHHhcccC
Q 008063 469 LLANNALLALGSDWPVAD--INPLCAIRTAMKRIPP------------GWDNAWIPSERISLTDALIAHTLSAARACFLE 534 (579)
Q Consensus 469 l~~~Gi~v~~gsD~~~~~--~~~~~~~~~~~~~~~~------------~~~~~~~~~~~ls~~~al~~~T~npA~~lgl~ 534 (579)
+.+.--++.+.||.|... ....+-++..|.+..+ .....-.-+..++++|+++|+|.+||++||++
T Consensus 371 l~~dp~~~~~ttDhPnggpf~~YP~ii~~lm~~~~r~~~~~~~~~~~~~~~~l~~~~Re~sL~EI~~mtTanPAkaLGL~ 450 (556)
T TIGR03121 371 LIKDPWRVFLTTDHPNGGPFTRYPRIIALLMSRKYREDMLSTVHPWAAARSTLGGIDREYSLYEIAIMTRAGPAKLLGLT 450 (556)
T ss_pred hcCCcceeEEeccCCCCCcccchHHHHHHHcCHHHHHHHHHhcCHHHHhhcccccccCCCCHHHHHHHHHHHHHHHhCCC
Confidence 344556899999998765 2333333333322111 00111124567999999999999999999998
Q ss_pred CccccccCCCcccEEEeCCCCCC---Chhhc--cCCeEEEEEECCEEeC
Q 008063 535 NDVGSLSPGKIADFVILSTSSWE---DFAAE--VSASIEATYVSGVQAY 578 (579)
Q Consensus 535 ~~~G~I~~G~~ADlvvld~~~~~---~~~~~--~~~~v~~v~v~G~~v~ 578 (579)
+ +|+|++|+.|||+|+|.++.. +...+ ....+..||++|++|+
T Consensus 451 d-kG~L~pGa~ADIaI~D~~~~~~~~~~~~v~~~~~~v~~Tik~G~vV~ 498 (556)
T TIGR03121 451 D-RGHLGVGADADIAVYDINPDDVDTDYADVEKAFSTALYVFKDGEIVV 498 (556)
T ss_pred C-CCCcCCCCcCCEEEEeCcccccCCchHHHhhccCCccEEEECCEEEE
Confidence 6 699999999999999876432 11111 1347899999999986
|
Members of this largely archaeal protein family are subunit A of the formylmethanofuran dehydrogenase. Nomenclature in some bacteria may reflect inclusion of the formyltransferase described by TIGR03119 as part of the complex, and therefore call this protein formyltransferase/hydrolase complex Fhc subunit A. Note that this model does not distinguish tungsten (FwdA) from molybdenum-containing (FmdA) forms of this enzyme; a single gene from this family is expressed constitutively in Methanobacterium thermoautotrophicum, which has both tungsten and molybdenum forms and may work interchangeably. |
| >PRK00369 pyrC dihydroorotase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.9e-23 Score=213.21 Aligned_cols=272 Identities=19% Similarity=0.156 Sum_probs=158.3
Q ss_pred HHHHHHHHHHhcCccEEEeCCcCCCCCccccchHHHHHHHHHHhhcCCCeeEEEEccCccchhhHHHHHHhcCCCCCCce
Q 008063 248 ALLRASNLALSRGVTTVVDFGRYYPGESVQLSWEDFADVYQWASYSEKMKIRVCLFFPLETWSSLADLINKTGHVLSDWV 327 (579)
Q Consensus 248 ~~~~~~~~~~~~Git~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (579)
.+..+.+.+++.|+|++.++... .|.....+..+......+. ...+++.++..... +..+.. . +
T Consensus 66 d~~sgs~AAa~GGvTtv~~mPnt----~P~~~~~~~l~~~~~~a~~-~~~vd~~~~~~~~~--~~~el~-~--------~ 129 (392)
T PRK00369 66 DVASGTSEAAYGGVTLVADMPNT----IPPLNTPEAITEKLAELEY-YSRVDYFVYSGVTK--DPEKVD-K--------L 129 (392)
T ss_pred cHHHHHHHHHhCCcEEEEECCCC----CCCCChHHHHHHHHHHhCc-CCeEEEEEEeeccC--CHHHHH-H--------h
Confidence 45667888999999999998643 2222333333333222222 22455554433222 111111 1 1
Q ss_pred EEceEEEEEcCccCCCcccccCCCCCCCCCCcccCCCHHHHHHHHHHHHHCCCeEEEEecchHHHHH----------HHH
Q 008063 328 YLGGVKAFADGSLGSNSALFHEPYADEPHNYGLQVMELESLLSMTMASDKSGLQVAIHAIGDRANDL----------VLD 397 (579)
Q Consensus 328 ~~~g~k~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~i~iH~~g~~~~~~----------~~~ 397 (579)
...|+|.+.++. ...+ +++.+.+.+.++.+||....-++. ...
T Consensus 130 ~~~g~k~f~~~~-----------------------~~~~----~~~~~~~~~~~v~~HaE~~~l~~~~~~~~rp~~aE~~ 182 (392)
T PRK00369 130 PIAGYKIFPEDL-----------------------EREE----TFRVLLKSRKLKILHPEVPLALKSNRKLRRNCWYEIA 182 (392)
T ss_pred hCceEEEECCCC-----------------------chHH----HHHHHHHhCCEEEEeCCCHHHhhcchhcccCHHHHHH
Confidence 233566552110 1122 344445556889999964321110 000
Q ss_pred HHHHHHHhcCCCCCCceEeeccCCChhhHHHHhhCCcEEEecccccccchhH--HHHhhChhhhhhhhhhHHHHHHCCCe
Q 008063 398 MYKSVVVTTGKRDQRFRIEHAQHLASGTAARFGDQGIVASMQPQHLLDDADS--ARKKLGVDRAERESYLFQSLLANNAL 475 (579)
Q Consensus 398 ~~~~~~~~~~~~~~~~~i~H~~~~~~~~~~~~~~~~i~~~~~p~~~~~~~~~--~~~~l~~~~~~~~~~~l~~l~~~Gi~ 475 (579)
+...+.. . .+.++.|.... +.++..++.|+++.+||++...+.+. ..+..+|.|.++....+.+.+++ .
T Consensus 183 ai~~~~~-~----~~lhi~HvSt~--~~v~~ak~~gvt~Ev~pHhL~l~~~~~~~~k~~PPLR~~~dr~aL~~~l~~--i 253 (392)
T PRK00369 183 ALYYVKD-Y----QNVHITHASNP--RTVRLAKELGFTVDITPHHLLVNGEKDCLTKVNPPIRDINERLWLLQALSE--V 253 (392)
T ss_pred HHHHHHH-h----CCEEEEECCCH--HHHHHHHHCCCeEEechhHheeccCCCCceEEeCCCCCHHHHHHHHHHHHh--C
Confidence 1111111 1 47788887653 45677778899999999998754432 23456677765666667777766 6
Q ss_pred eeecCCCCCCCCC----HHHH-------HHHHHcccCCCCCCCCCCCCCCCHHHHHHHHcHHHHHhcccCCccccccCCC
Q 008063 476 LALGSDWPVADIN----PLCA-------IRTAMKRIPPGWDNAWIPSERISLTDALIAHTLSAARACFLENDVGSLSPGK 544 (579)
Q Consensus 476 v~~gsD~~~~~~~----~~~~-------~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~npA~~lgl~~~~G~I~~G~ 544 (579)
..++||.+..... .+.. +...+.-. ..+..+.+++++++++++|.|||+++|+++ |.|++|+
T Consensus 254 d~i~SDHaP~~~~~K~~~f~~~~~Gi~GlE~~lpll-----~~~v~~~~lsl~~~v~~~s~nPA~ilgl~~--g~i~~G~ 326 (392)
T PRK00369 254 DAIASDHAPHSSFEKLQPYEVCPPGIAALSFTPPFI-----YTLVSKGILSIDRAVELISTNPARILGIPY--GEIKEGY 326 (392)
T ss_pred CEEEeCCCCCCHHHccCCHhhCCCCCeeHHHHHHHH-----HHHHHcCCCCHHHHHHHHHHHHHHHhCCCC--CccCCCC
Confidence 7999997544211 1110 00100000 001134569999999999999999999963 8899999
Q ss_pred cccEEEeCCCCCC-----------Chhhc-cCCeEEEEEECCEEeC
Q 008063 545 IADFVILSTSSWE-----------DFAAE-VSASIEATYVSGVQAY 578 (579)
Q Consensus 545 ~ADlvvld~~~~~-----------~~~~~-~~~~v~~v~v~G~~v~ 578 (579)
.|||+++|.+.+. ++... ...+|..||++|++||
T Consensus 327 ~ADlvi~d~~~~~~~~~~sk~~~sp~~G~~l~G~v~~ti~~G~~v~ 372 (392)
T PRK00369 327 RANFTVIQFEDWRYSTKYSKVIETPLDGFELKASVYATIVQGKLAY 372 (392)
T ss_pred ccCEEEEeCCceeEccccccCCCCCCCCCEeeeEEEEEEECCEEEE
Confidence 9999999987543 12111 1569999999999987
|
|
| >COG1820 NagA N-acetylglucosamine-6-phosphate deacetylase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.9e-24 Score=211.22 Aligned_cols=71 Identities=31% Similarity=0.503 Sum_probs=63.4
Q ss_pred CCHHHHHHHHHcccCCCCCCCCCCCCCCCHHHHHHHHcHHHHHhcccCCccccccCCCcccEEEeCCCCCCChhhccCCe
Q 008063 487 INPLCAIRTAMKRIPPGWDNAWIPSERISLTDALIAHTLSAARACFLENDVGSLSPGKIADFVILSTSSWEDFAAEVSAS 566 (579)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~npA~~lgl~~~~G~I~~G~~ADlvvld~~~~~~~~~~~~~~ 566 (579)
..+.+++++++.. .+++++||++|+|.+||+.||+++++|+|++||.||||+||.|. +
T Consensus 310 Ltm~~avrn~v~~------------~~~~~~eAv~maS~~PA~~lgl~~~~G~i~~G~~Adlvvld~d~----------~ 367 (380)
T COG1820 310 LTMDEAVRNLVEW------------GGISLAEAVRMASLNPAKALGLDDRLGSIKPGKDADLVVLDDDL----------N 367 (380)
T ss_pred eeHHHHHHHHHHH------------hCCCHHHHHHHhhhhHHHHhCCcCcccccCCCcccCEEEECCCC----------c
Confidence 5777888877753 45899999999999999999999999999999999999999665 8
Q ss_pred EEEEEECCEEeCC
Q 008063 567 IEATYVSGVQAYP 579 (579)
Q Consensus 567 v~~v~v~G~~v~~ 579 (579)
|..||++|+++|.
T Consensus 368 v~~T~i~G~~~~~ 380 (380)
T COG1820 368 VKATWINGEKVFN 380 (380)
T ss_pred EEEEEECCEEeeC
Confidence 9999999999874
|
|
| >COG3964 Predicted amidohydrolase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=2e-23 Score=194.81 Aligned_cols=307 Identities=22% Similarity=0.276 Sum_probs=198.4
Q ss_pred ccEEEEcCeEEeCCCCCCeeeEEEEECCEEEEecChHHHHhhccCCCeEEeCCCCeeecccccccccccccCcccccccc
Q 008063 45 ADLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHFIPGGLQMARVKL 124 (579)
Q Consensus 45 ~~~likn~~v~~~~~~~~~~~~v~I~~GkI~~Ig~~~~~~~~~~~~~~viD~~g~~V~PG~ID~H~H~~~~~~~~~~~~~ 124 (579)
.+++++|++++++........+|.|-||||++++. .+. +.+.++||++|.+|.|||||.|+|.+.++.-
T Consensus 4 fdiLLt~~rlidpa~g~d~~tniai~ngkIaa~~d-~~a----pa~tq~Ida~Gc~VspG~iDlHvHvy~ggt~------ 72 (386)
T COG3964 4 FDILLTGGRLIDPARGIDEITNIAIINGKIAAADD-YPA----PAETQIIDADGCIVSPGLIDLHVHVYYGGTE------ 72 (386)
T ss_pred cceeeeCCeecccccccCccceeeeecCeEEeccC-cCC----ChhheEEccCccEeccCeeeeeeEEecCCCc------
Confidence 46999999999986554467799999999999993 222 3568999999999999999999998765430
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCCCeEEEeCCCCCCCCCCCCChHHhhhhCCCCeEEEEeCCCchhhhcHHHHHHcCCCCC
Q 008063 125 RGVSHKDEFVRRVKEAVKNSKKGSWILGGGWNNDLWGGDLPMASWIDDITPHNPVWLSRMDGHMGLANSVALQLVGITNL 204 (579)
Q Consensus 125 ~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~p~~~~ld~~~~~~p~~~~~~~~~~~~~n~~~~~~~g~~~~ 204 (579)
T Consensus 73 -------------------------------------------------------------------------------- 72 (386)
T COG3964 73 -------------------------------------------------------------------------------- 72 (386)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCeEEeCCCCCcCEEEhHhHHHHhcccCCCCCHHHHHHHHHHHHHHHHhcCccEEEeCCcCCCCCccccchHHHH
Q 008063 205 SEDPNGGTIMKTSSGEPTGLLIDAAMKLILPWIPEVSVDERREALLRASNLALSRGVTTVVDFGRYYPGESVQLSWEDFA 284 (579)
Q Consensus 205 ~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Git~v~~~~~~~~~~~~~~~~~~~~ 284 (579)
++. ..-+...+.|+||+.|.|+- ...++.
T Consensus 73 -----~~v--------------------------------------~pd~~ga~~GvTTvVDAGSa--------Gaanf~ 101 (386)
T COG3964 73 -----GGV--------------------------------------RPDMYGAPNGVTTVVDAGSA--------GAANFD 101 (386)
T ss_pred -----cCc--------------------------------------CHHHccccCCceEEEecCCc--------Cccchh
Confidence 000 01223678899999999763 223455
Q ss_pred HHHHHHhhcCCCeeEEEEccCccch--------------hhHHHHHHhcCCCCCCceEEceEEEEEcCccCCCcccccCC
Q 008063 285 DVYQWASYSEKMKIRVCLFFPLETW--------------SSLADLINKTGHVLSDWVYLGGVKAFADGSLGSNSALFHEP 350 (579)
Q Consensus 285 ~~~~~~~~~~~~~i~v~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~g~k~~~dg~~~~~~~~~~~~ 350 (579)
..++...+.....++.++....... .+..+..+ +..+ ...|+|+-......+
T Consensus 102 gF~r~vie~Sr~RI~Aflnvs~~Gl~a~nE~~d~~nid~d~i~aa~r----eh~d--~ivGlKvR~s~~~~g-------- 167 (386)
T COG3964 102 GFYRTVIEASRVRIKAFLNVSPPGLTASNELYDPDNIDEDKIHAAFR----EHRD--VIVGLKVRVSTEDIG-------- 167 (386)
T ss_pred hHHHHhhcchhheeeeeeeccCcceeeehhhCChhhCCHHHHHHHHH----hCcC--cEEEEEEEeeecccc--------
Confidence 6666666666555555543322211 11111111 1122 245677654332211
Q ss_pred CCCCCCCCcccCCCHHHHHHHHHHHHHCCCeEEEEecchHH-HHHHHHHHHHHHHhcCCCCCCceEeeccCCC-------
Q 008063 351 YADEPHNYGLQVMELESLLSMTMASDKSGLQVAIHAIGDRA-NDLVLDMYKSVVVTTGKRDQRFRIEHAQHLA------- 422 (579)
Q Consensus 351 ~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~i~iH~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~i~H~~~~~------- 422 (579)
-..+ ..+.+..+.|+..++|+++|.-.... .+++++.+ ..-..+.||+..-
T Consensus 168 ---------~~Gi--tPl~la~~ia~~~klPlmvHigePp~~~dEvlerL----------~~GDIitHcfngkpn~~l~~ 226 (386)
T COG3964 168 ---------EYGI--TPLTLALRIANDLKLPLMVHIGEPPVLMDEVLERL----------RRGDIITHCFNGKPNTILTD 226 (386)
T ss_pred ---------ccCC--chHHHHHHHHhhcCCceEEecCCCCccHHHHHHhc----------cCCceeeeeccCCCCCcccc
Confidence 0012 23667778888999999999865432 24443322 2355899997532
Q ss_pred h----hhHHHHhhCCcEEEecccccccchhHHHHhhChhhhhhhhhhHHHHHHCCC-eeeecCCCCCCC--CCHHHHHHH
Q 008063 423 S----GTAARFGDQGIVASMQPQHLLDDADSARKKLGVDRAERESYLFQSLLANNA-LLALGSDWPVAD--INPLCAIRT 495 (579)
Q Consensus 423 ~----~~~~~~~~~~i~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~~Gi-~v~~gsD~~~~~--~~~~~~~~~ 495 (579)
+ ...++.++.|+.+..-....-.+. .-.+++...|+ +..++||-.... .-|.+.+-+
T Consensus 227 dg~vr~~vrra~erGV~fD~ghG~asfsf----------------~vAr~aia~GllP~~ISSDlh~~~~~n~Pv~dla~ 290 (386)
T COG3964 227 DGVVRAEVRRARERGVIFDAGHGRASFSF----------------NVARRAIANGLLPDIISSDLHTITKLNGPVYDLAW 290 (386)
T ss_pred chhHHHHHHHHHhcceEEEccCCcceeeH----------------HHHHHHHhcCCCcceeeccceeeeecCchHHHHHH
Confidence 1 456677888988876544322111 12467888888 899999943222 123333333
Q ss_pred HHcccCCCCCCCCCCCCCCCHHHHHHHHcHHHHHhcccCCccccccCCCcccEEEeCCC
Q 008063 496 AMKRIPPGWDNAWIPSERISLTDALIAHTLSAARACFLENDVGSLSPGKIADFVILSTS 554 (579)
Q Consensus 496 ~~~~~~~~~~~~~~~~~~ls~~~al~~~T~npA~~lgl~~~~G~I~~G~~ADlvvld~~ 554 (579)
.|..+ -..|+++.++++++|.|||..++++. +|+|+||..|||+||+..
T Consensus 291 ~mSKl---------lalgmpl~~Vi~avT~npA~~i~l~~-~gtLa~G~~aD~tvf~lk 339 (386)
T COG3964 291 IMSKL---------LALGMPLTDVINAVTHNPAVLIGLAE-IGTLAPGAFADITVFKLK 339 (386)
T ss_pred HHHHH---------HHcCCcHHHHHHHHhcCHHHHhCccc-cCccCCCcccceEEEEec
Confidence 33322 23469999999999999999999994 999999999999999744
|
|
| >cd01308 Isoaspartyl-dipeptidase Isoaspartyl dipeptidase hydrolyzes the beta-L-isoaspartyl linkages in dipeptides, as part of the degradative pathway to eliminate proteins with beta-L-isoaspartyl peptide bonds, bonds whereby the beta-group of an aspartate forms the peptide link with the amino group of the following amino acid | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.8e-22 Score=207.28 Aligned_cols=64 Identities=28% Similarity=0.573 Sum_probs=52.4
Q ss_pred EEEEcCeEEeCCCCCCeeeEEEEECCEEEEecChHHHHhhccCCCeEEeCCCCeeecccccccccccc
Q 008063 47 LVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHFIP 114 (579)
Q Consensus 47 ~likn~~v~~~~~~~~~~~~v~I~~GkI~~Ig~~~~~~~~~~~~~~viD~~g~~V~PG~ID~H~H~~~ 114 (579)
++|+|++|++++.. ..++|+|+||+|++|++..+... ..+.++||++|++|+|||||+|+|+..
T Consensus 2 ~~i~~~~v~~~~~~--~~~~v~i~~g~I~~v~~~~~~~~--~~~~~~id~~g~~v~PG~id~H~H~~~ 65 (387)
T cd01308 2 TLIKNAEVYAPEYL--GKKDILIAGGKILAIEDQLNLPG--YENVTVVDLHGKILVPGFIDQHVHIIG 65 (387)
T ss_pred EEEECcEEeCCCCc--cceEEEEECCEEEEEeCCccccc--CCCCeEEECCCCEEccCeeehhhCccc
Confidence 57999999997542 56799999999999997653221 245789999999999999999999853
|
Formation of this bond is a spontaneous nonenzymatic reaction in nature and can profoundly effect the function of the protein. Isoaspartyl dipeptidase is an octameric enzyme that contains a binuclear zinc center in the active site of each subunit and shows a strong preference of hydrolyzing Asp-Leu dipeptides. |
| >cd00854 NagA N-acetylglucosamine-6-phosphate deacetylase, NagA, catalyzes the hydrolysis of the N-acetyl group of N-acetyl-glucosamine-6-phosphate (GlcNAc-6-P) to glucosamine 6-phosphate and acetate | Back alignment and domain information |
|---|
Probab=99.90 E-value=6.3e-23 Score=212.40 Aligned_cols=173 Identities=18% Similarity=0.184 Sum_probs=103.5
Q ss_pred HHHHHHHHHCCCeEE-EEecch-HHHHHHHHHHHHHHHh--cCCC---------------C--CCc-eEeeccCCChhhH
Q 008063 369 LSMTMASDKSGLQVA-IHAIGD-RANDLVLDMYKSVVVT--TGKR---------------D--QRF-RIEHAQHLASGTA 426 (579)
Q Consensus 369 ~~~~~~a~~~g~~i~-iH~~g~-~~~~~~~~~~~~~~~~--~~~~---------------~--~~~-~i~H~~~~~~~~~ 426 (579)
.++++.++++|+.+. .|...+ ......++........ +++. . ... .|.|+.+++++++
T Consensus 175 ~~~i~~~~~~gi~v~~GH~~a~~~~~~~a~~~G~~~~tH~~n~m~~~~~r~~~~~~a~l~~~~~~~~li~dg~Hv~~~~~ 254 (374)
T cd00854 175 LELIRYLVERGIIVSIGHSDATYEQAVAAFEAGATHVTHLFNAMSPLHHREPGVVGAALSDDDVYAELIADGIHVHPAAV 254 (374)
T ss_pred HHHHHHHHHCCeEEEeeCCcCCHHHHHHHHHcCCCeeeECCCCCCCcCCCCCcHHHHhhcCCCCeEEEEcCCCcCCHHHH
Confidence 788999999999994 887632 2333333321111110 0000 0 011 4667777788888
Q ss_pred HHHhhCC--cEEEecccccccchhHHHHhhChhhhhhhhhhHHHH--HHCCCeeeecCCCCC-CCCCHHHHHHHHHcccC
Q 008063 427 ARFGDQG--IVASMQPQHLLDDADSARKKLGVDRAERESYLFQSL--LANNALLALGSDWPV-ADINPLCAIRTAMKRIP 501 (579)
Q Consensus 427 ~~~~~~~--i~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~l~~l--~~~Gi~v~~gsD~~~-~~~~~~~~~~~~~~~~~ 501 (579)
+.+.+.. -.+..++.++...+- + ...+++... ...+..+.+.+|..+ +..++...++.++..
T Consensus 255 ~~~~r~~g~~~~~lvtD~~~~~G~------~-----~g~y~~~~~~~~~~~~~~~~~~g~laG~~~~l~~~~~~l~~~-- 321 (374)
T cd00854 255 RLAYRAKGADKIVLVTDAMAAAGL------P-----DGEYELGGQTVTVKDGVARLADGTLAGSTLTMDQAVRNMVKW-- 321 (374)
T ss_pred HHHHHhcCCCcEEEEeccccccCC------C-----CCeEEECCEEEEEECCEEEcCCCCeeehHhhHHHHHHHHHHh--
Confidence 8777763 345555555432110 0 001111110 001112233333222 235566677666542
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHcHHHHHhcccCCccccccCCCcccEEEeCCCCCCChhhccCCeEEEEEECC
Q 008063 502 PGWDNAWIPSERISLTDALIAHTLSAARACFLENDVGSLSPGKIADFVILSTSSWEDFAAEVSASIEATYVSG 574 (579)
Q Consensus 502 ~~~~~~~~~~~~ls~~~al~~~T~npA~~lgl~~~~G~I~~G~~ADlvvld~~~~~~~~~~~~~~v~~v~v~G 574 (579)
.+++++++++++|.|||+.+|+++..|+|++|+.|||+++|.+. .|..||++|
T Consensus 322 ----------~~l~~~~al~~aT~npA~~lg~~~~~G~i~~G~~ADlvv~d~~~----------~v~~~~~~G 374 (374)
T cd00854 322 ----------GGCPLEEAVRMASLNPAKLLGLDDRKGSLKPGKDADLVVLDDDL----------NVKATWING 374 (374)
T ss_pred ----------hCCCHHHHHHHHhHHHHHHcCCCCCcCCcCCCCcCCEEEECCCC----------cEEEEEeCc
Confidence 34899999999999999999999778999999999999999764 799999987
|
This is the first committed step in the biosynthetic pathway to amino-sugar-nucleotides, which is needed for cell wall peptidoglycan and teichoic acid biosynthesis. Deacetylation of N-acetylglucosamine is also important in lipopolysaccharide synthesis and cell wall recycling. |
| >PRK11170 nagA N-acetylglucosamine-6-phosphate deacetylase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2e-21 Score=200.02 Aligned_cols=58 Identities=31% Similarity=0.419 Sum_probs=53.4
Q ss_pred CCCCCHHHHHHHHcHHHHHhcccCCccccccCCCcccEEEeCCCCCCChhhccCCeEEEEEECCEEeC
Q 008063 511 SERISLTDALIAHTLSAARACFLENDVGSLSPGKIADFVILSTSSWEDFAAEVSASIEATYVSGVQAY 578 (579)
Q Consensus 511 ~~~ls~~~al~~~T~npA~~lgl~~~~G~I~~G~~ADlvvld~~~~~~~~~~~~~~v~~v~v~G~~v~ 578 (579)
..++++++|++++|.|||+.+|+++.+|+|++|+.|||+|||.+. ++..||++|++++
T Consensus 323 ~~~~~~~eal~~aT~npA~~lgl~~~~G~i~~G~~ADlvvld~~~----------~v~~v~~~G~~~~ 380 (382)
T PRK11170 323 HVGIALDEALRMATLYPARAIGVDKRLGSIEAGKVANLTAFTRDF----------KITKTIVNGNEVV 380 (382)
T ss_pred hcCCCHHHHHHHHHHHHHHHhCCCCCccccCCCCcCCEEEECCCC----------cEEEEEECCEEee
Confidence 357999999999999999999998778999999999999999654 7999999999886
|
|
| >TIGR00221 nagA N-acetylglucosamine-6-phosphate deacetylase | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.9e-22 Score=204.66 Aligned_cols=67 Identities=30% Similarity=0.395 Sum_probs=57.0
Q ss_pred CCHHHHHHHHHcccCCCCCCCCCCCCCCCHHHHHHHHcHHHHHhcccCCccccccCCCcccEEEeCCCCCCChhhccCCe
Q 008063 487 INPLCAIRTAMKRIPPGWDNAWIPSERISLTDALIAHTLSAARACFLENDVGSLSPGKIADFVILSTSSWEDFAAEVSAS 566 (579)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~npA~~lgl~~~~G~I~~G~~ADlvvld~~~~~~~~~~~~~~ 566 (579)
..+..+++.++. ..+++++++++++|.|||+.+|+++++|+|++|+.|||+|+|.+. +
T Consensus 314 ltl~~~v~~l~~------------~~~~~~~eal~~aT~npA~~lgl~~~~G~i~~G~~ADlvv~d~~~----------~ 371 (380)
T TIGR00221 314 LTMIEGARNLVE------------FTNISLTDAARMSSLNPARALGIDDRLGSVTVGKDANLVVFTPDF----------E 371 (380)
T ss_pred hhHHHHHHHHHH------------hhCCCHHHHHHHHhHHHHHHhCCCCCCcccCCCCcCCEEEECCCC----------C
Confidence 556666666553 235999999999999999999998778999999999999999664 7
Q ss_pred EEEEEECCE
Q 008063 567 IEATYVSGV 575 (579)
Q Consensus 567 v~~v~v~G~ 575 (579)
+..||++|+
T Consensus 372 v~~t~~~G~ 380 (380)
T TIGR00221 372 VILTIVNGN 380 (380)
T ss_pred EEEEEeCCC
Confidence 999999995
|
|
| >COG3454 Metal-dependent hydrolase involved in phosphonate metabolism [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.5e-22 Score=187.49 Aligned_cols=96 Identities=25% Similarity=0.241 Sum_probs=72.7
Q ss_pred hhhhHHHHHHCCCeeeecCCCCCCCCCHHHHHHHHHcccCCCCCCCCCCCCCCCHHHHHHHHcHHHHHhcccCCcccccc
Q 008063 462 ESYLFQSLLANNALLALGSDWPVADINPLCAIRTAMKRIPPGWDNAWIPSERISLTDALIAHTLSAARACFLENDVGSLS 541 (579)
Q Consensus 462 ~~~~l~~l~~~Gi~v~~gsD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~npA~~lgl~~~~G~I~ 541 (579)
.....+++.+.|+...++||. .+.+.+.+....-. ....+++.+|++|+|+|||+++|+.+ +|+|+
T Consensus 282 GNvsA~ela~~glLDiLsSDY--~P~SLl~A~F~La~-----------~~~~~~lpqAvalvt~nPA~algl~D-RG~Ia 347 (377)
T COG3454 282 GNVSARELAQHGLLDILSSDY--VPASLLHAAFRLAD-----------LGSNISLPQAVALVTKNPARALGLTD-RGRIA 347 (377)
T ss_pred cchhHHHHHhCCceeeecccC--CcHHHHHHHHHHhh-----------hhcccCHHHHHHHhccCHHHhcCCCc-ccccc
Confidence 344568999999999999996 33344443322111 11235899999999999999999996 89999
Q ss_pred CCCcccEEEeCCCCCCChhhccCCeEEEEEECCEEeC
Q 008063 542 PGKIADFVILSTSSWEDFAAEVSASIEATYVSGVQAY 578 (579)
Q Consensus 542 ~G~~ADlvvld~~~~~~~~~~~~~~v~~v~v~G~~v~ 578 (579)
||++||||....+- .-..|..||+.||.|+
T Consensus 348 ~GlrADlv~v~~~~-------~vp~ir~vwr~G~rv~ 377 (377)
T COG3454 348 PGLRADLVRVRRDG-------GVPVIRTVWRAGKRVA 377 (377)
T ss_pred cccccceEEEecCC-------CCceeeeeeecceecC
Confidence 99999999775432 1248999999999885
|
|
| >TIGR03583 EF_0837 probable amidohydrolase EF_0837/AHA_3915 | Back alignment and domain information |
|---|
Probab=99.89 E-value=1e-20 Score=196.03 Aligned_cols=172 Identities=13% Similarity=0.076 Sum_probs=104.2
Q ss_pred HHHHHHHHHHHHHCCCeEEEEecchH-HHHHHHHHHHHHHHhcCCCCCCceEeeccCCCh-----------hhHHHHhhC
Q 008063 365 LESLLSMTMASDKSGLQVAIHAIGDR-ANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLAS-----------GTAARFGDQ 432 (579)
Q Consensus 365 ~~~l~~~~~~a~~~g~~i~iH~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~i~H~~~~~~-----------~~~~~~~~~ 432 (579)
+..+.+.+..+ +.+.++.+|+.... ...++++.+ ..| ..+.||+.... +.+......
T Consensus 165 ~~~~~~~l~~~-~~~~pv~vH~~~a~~~~~~i~~~~-----~~g-----~~~~H~fng~~~~~~r~~g~~~~~~~~~l~~ 233 (365)
T TIGR03583 165 PLEIAKQIQQE-NLELPLMVHIGSAPPELDEILALM-----EKG-----DVLTHCFNGKPNGILRETGEVKPSVLEAYNR 233 (365)
T ss_pred HHHHHHHHHHh-cCCCcEEEEeCCCccCHHHHHHHh-----cCC-----CeeeeeecCCCCCCCCCcchHHHHHHHHHhC
Confidence 44455545444 68999999997432 233333322 111 26789886665 566666677
Q ss_pred CcEEEecccccccchhHHHHhhChhhhhhhhhhHHHHHHCCC-eeeecCCCCCC-----C-CCHHHHHHHHHcccCCCCC
Q 008063 433 GIVASMQPQHLLDDADSARKKLGVDRAERESYLFQSLLANNA-LLALGSDWPVA-----D-INPLCAIRTAMKRIPPGWD 505 (579)
Q Consensus 433 ~i~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~~Gi-~v~~gsD~~~~-----~-~~~~~~~~~~~~~~~~~~~ 505 (579)
|+.+...-.......+ ....+...++ .++.++|.... + ......++.++
T Consensus 234 G~i~d~~hg~~~~~~~----------------~~~~~~~~~~~~~td~~d~~~~~~~~gp~~~l~~~~~~~~-------- 289 (365)
T TIGR03583 234 GVILDVGHGTASFSFH----------------VAEKAKRAGIFPDTISTDIYIRNRINGPVYSLATVMSKFL-------- 289 (365)
T ss_pred eEEEEeCCCCCCchHH----------------HHHHHHhCCCCCcccccccccCCCccCccccHHHHHHHHH--------
Confidence 8877765222111000 1122333443 35566665321 1 12344444433
Q ss_pred CCCCCCCCCCHHHHHHHHcHHHHHhcccCCccccccCCCcccEEEeCCCCCC-Chhhc--------cCCeEEEEEECCEE
Q 008063 506 NAWIPSERISLTDALIAHTLSAARACFLENDVGSLSPGKIADFVILSTSSWE-DFAAE--------VSASIEATYVSGVQ 576 (579)
Q Consensus 506 ~~~~~~~~ls~~~al~~~T~npA~~lgl~~~~G~I~~G~~ADlvvld~~~~~-~~~~~--------~~~~v~~v~v~G~~ 576 (579)
..|++++++++++|.|||+++|+++ .|+|++|+.|||+|+|.+.-. .+... +...++.|+++|++
T Consensus 290 -----~~g~~~~ea~~~~t~npa~~~gl~~-~g~i~~g~~ad~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 363 (365)
T TIGR03583 290 -----ALGYSLEEVIEKVTKNAAEILKLTQ-KGRLQEGYDADLTIFTVKAEPKKLTDSEGDSRIAEEQIKPLAVIIGGEY 363 (365)
T ss_pred -----HcCCCHHHHHHHHHHHHHHHhCCCC-CCCcCCCCcccEEEEecCCCCceeecCCCCEEEeccccceEEEEECCEE
Confidence 1359999999999999999999976 799999999999999964322 11111 13456889999997
Q ss_pred e
Q 008063 577 A 577 (579)
Q Consensus 577 v 577 (579)
+
T Consensus 364 ~ 364 (365)
T TIGR03583 364 Y 364 (365)
T ss_pred e
Confidence 4
|
Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. These proteins resemble aminohydrolases (see pfam01979), including dihydroorotases. The function is unknown. |
| >COG0804 UreC Urea amidohydrolase (urease) alpha subunit [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.88 E-value=3e-21 Score=186.56 Aligned_cols=346 Identities=20% Similarity=0.222 Sum_probs=226.4
Q ss_pred CCCccEEEEcCeEEeCCCCCCeeeEEEEECCEEEEecChHHHHh------hccCCCeEEeCCCCeeeccccccccccccc
Q 008063 42 NLEADLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQ------LAADGTNVLNLQGKVVVPGFIDSHVHFIPG 115 (579)
Q Consensus 42 ~~~~~~likn~~v~~~~~~~~~~~~v~I~~GkI~~Ig~~~~~~~------~~~~~~~viD~~g~~V~PG~ID~H~H~~~~ 115 (579)
....+++|.|+.|+|-.|. .+.+|.|+||||..||+...+.. ..++..++|-+.|++|+.|=||+|+|+-.+
T Consensus 64 ~~~~D~VITNa~IiD~~Gi--~KADiGikdGrI~~IGKaGNPd~~dgV~iiiG~sTe~iagEg~I~TAGGiDtHiHfI~P 141 (568)
T COG0804 64 AGALDLVITNALIIDYWGI--VKADIGIKDGRIAGIGKAGNPDIMDGVTIIIGPSTEIIAGEGKIVTAGGIDTHIHFICP 141 (568)
T ss_pred cCcccEEEeeeEEEeccce--EEeecccccceEEEeecCCCCCccCCceEEeccccceecCCceEEeeccccceeEEecH
Confidence 4567899999999998664 77899999999999997543321 225677899999999999999999998432
Q ss_pred CccccccccCCCCCHHHHHHHHHHHHHcCCCCCeEEEeCCCCCCCCCCCCChHHhhhhCCCCeEEEEeCCCchhhhcHHH
Q 008063 116 GLQMARVKLRGVSHKDEFVRRVKEAVKNSKKGSWILGGGWNNDLWGGDLPMASWIDDITPHNPVWLSRMDGHMGLANSVA 195 (579)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~p~~~~ld~~~~~~p~~~~~~~~~~~~~n~~~ 195 (579)
.
T Consensus 142 q------------------------------------------------------------------------------- 142 (568)
T COG0804 142 Q------------------------------------------------------------------------------- 142 (568)
T ss_pred H-------------------------------------------------------------------------------
Confidence 1
Q ss_pred HHHcCCCCCCCCCCCCeEEeCCCCCcCEEEhHhHHHHhcccCCCCCHHHHHHHHHHHHHHHHhcCccEEEeCCcCCCCCc
Q 008063 196 LQLVGITNLSEDPNGGTIMKTSSGEPTGLLIDAAMKLILPWIPEVSVDERREALLRASNLALSRGVTTVVDFGRYYPGES 275 (579)
Q Consensus 196 ~~~~g~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Git~v~~~~~~~~~~~ 275 (579)
.++.++.+|+|++...|.+...++
T Consensus 143 --------------------------------------------------------qi~~Al~sGiTtmiGGGtGpa~Gt 166 (568)
T COG0804 143 --------------------------------------------------------QIEEALASGITTMIGGGTGPADGT 166 (568)
T ss_pred --------------------------------------------------------HHHHHHhcCcEEEecCccCCCCCc
Confidence 456789999999988776554444
Q ss_pred cccc-hHHHHHHHHHHhhcCCCeeEEEEccCccc-h-hhHHHHHHhcCCCCCCceEEceEEEEEcCccCCCcccccCCCC
Q 008063 276 VQLS-WEDFADVYQWASYSEKMKIRVCLFFPLET-W-SSLADLINKTGHVLSDWVYLGGVKAFADGSLGSNSALFHEPYA 352 (579)
Q Consensus 276 ~~~~-~~~~~~~~~~~~~~~~~~i~v~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~g~k~~~dg~~~~~~~~~~~~~~ 352 (579)
..++ .+.-+.+.+.++....+++++.+..-... . ..+.+.+.. ++....+++.|.
T Consensus 167 ~aTT~TpG~w~i~rMl~a~d~~p~N~g~lgKGn~s~~~~L~Eqi~a----------------------Ga~GlKlHEDWG 224 (568)
T COG0804 167 NATTCTPGPWHIARMLQAADGLPMNIGFLGKGNASNPAPLAEQIEA----------------------GAIGLKLHEDWG 224 (568)
T ss_pred ccccccCCHHHHHHHHHhhhcCceeeEEeecCCCCCchhHHHHHhh----------------------ccceeEeecccC
Confidence 4333 45667788888888999999988654322 1 122222221 122334455555
Q ss_pred CCCCCCcccCCCHHHHHHHHHHHHHCCCeEEEEecchHH---HHHHHHHHHHHHHhcCCCCCCceEeeccC---CC-hhh
Q 008063 353 DEPHNYGLQVMELESLLSMTMASDKSGLQVAIHAIGDRA---NDLVLDMYKSVVVTTGKRDQRFRIEHAQH---LA-SGT 425 (579)
Q Consensus 353 ~~~~~~~~~~~~~~~l~~~~~~a~~~g~~i~iH~~g~~~---~~~~~~~~~~~~~~~~~~~~~~~i~H~~~---~~-~~~ 425 (579)
.++..+...+..|.++++++.+|...-.+ ++..+++++ +...+..|..- .+ ++.
T Consensus 225 ----------~TpaaI~~~L~VAD~~DvqVaiHtDTLNEsGfvEdTi~A~~---------gRtIHtyHtEGAGGGHAPDi 285 (568)
T COG0804 225 ----------ATPAAIDTCLSVADEYDVQVAIHTDTLNESGFVEDTIAAIK---------GRTIHTYHTEGAGGGHAPDI 285 (568)
T ss_pred ----------CCHHHHHHHHhhhhhhceEEEEeecccccccchHhHHHHhc---------CceeEEeeccCCCCCCccHH
Confidence 68899999999999999999999864333 333333332 11222222221 12 333
Q ss_pred HHHHhhCCcEEEe-cccc-----------------------cccchhHHHHhhChhhhhhhhhhHHHHHHCCCeeeecCC
Q 008063 426 AARFGDQGIVASM-QPQH-----------------------LLDDADSARKKLGVDRAERESYLFQSLLANNALLALGSD 481 (579)
Q Consensus 426 ~~~~~~~~i~~~~-~p~~-----------------------~~~~~~~~~~~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD 481 (579)
++.....++-.+. .|.. ..++....++++. . +....-..|+|.|+.-.++||
T Consensus 286 ikv~~~~NvLPsSTNPT~PytvNT~~EhlDMlMVcHhL~p~ipeDvaFAeSRIR---~-eTIAAEdiLhDmGafSmisSD 361 (568)
T COG0804 286 IKVAGQPNVLPSSTNPTRPYTVNTIDEHLDMLMVCHHLDPRIPEDVAFAESRIR---P-ETIAAEDILHDMGAFSMISSD 361 (568)
T ss_pred HHHccCCCcCcCCCCCCCCcccccHHHhhhhhhhhccCCCCCcchhhhhhhccc---h-hhhhHHHHHhhccceEEeccc
Confidence 3333333432221 1211 1122222222332 2 455566778999999999999
Q ss_pred CCCCC------CCHHHHHHHHHc-ccCCCCCCCCCCCCCCCHHHHHHHHcHHHHHhcccCCccccccCCCcccEEEeCCC
Q 008063 482 WPVAD------INPLCAIRTAMK-RIPPGWDNAWIPSERISLTDALIAHTLSAARACFLENDVGSLSPGKIADFVILSTS 554 (579)
Q Consensus 482 ~~~~~------~~~~~~~~~~~~-~~~~~~~~~~~~~~~ls~~~al~~~T~npA~~lgl~~~~G~I~~G~~ADlvvld~~ 554 (579)
+.... ...|+....+-. |....+.....+ .+-...-+..+|+|||-..|+++.+||+|+||.||||+|+.-
T Consensus 362 SQAMGRvGEvi~RtwQtA~kmK~qrG~L~~d~~~nD--N~RvkRYiaKyTINPAIthGis~~vGSvEvGK~ADlVLW~Pa 439 (568)
T COG0804 362 SQAMGRVGEVITRTWQTADKMKKQRGALPEDAGGND--NFRVKRYIAKYTINPAITHGISHEVGSVEVGKLADLVLWDPA 439 (568)
T ss_pred hHhhhccchhhhhHHHHHHHHHHhcCCCCCCCCCCc--cHHHhhhhhheecCHHHhcccchhccceeccceeeeeeechh
Confidence 76543 456666555533 322222111122 234455678999999999999999999999999999999955
Q ss_pred CCCChhhccCCeEEEEEECCEEeC
Q 008063 555 SWEDFAAEVSASIEATYVSGVQAY 578 (579)
Q Consensus 555 ~~~~~~~~~~~~v~~v~v~G~~v~ 578 (579)
-| ..++..|+++|-+.|
T Consensus 440 FF-------GvKP~~vlkgG~ia~ 456 (568)
T COG0804 440 FF-------GVKPELVLKGGMIAW 456 (568)
T ss_pred hc-------CCCcceEEecceeee
Confidence 43 558888999998765
|
|
| >cd01307 Met_dep_hydrolase_B Metallo-dependent hydrolases, subgroup B is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site | Back alignment and domain information |
|---|
Probab=99.88 E-value=6.5e-21 Score=195.25 Aligned_cols=149 Identities=15% Similarity=0.139 Sum_probs=102.6
Q ss_pred HHHHHHHHHHHCCCeEEEEecch-HHHHHHHHHHHHHHHhcCCCCCCceEeeccCCCh-----------hhHHHHhhCCc
Q 008063 367 SLLSMTMASDKSGLQVAIHAIGD-RANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLAS-----------GTAARFGDQGI 434 (579)
Q Consensus 367 ~l~~~~~~a~~~g~~i~iH~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~i~H~~~~~~-----------~~~~~~~~~~i 434 (579)
.+++.++.+++.|+++.+|+... ....++++.+ .....+.|+...+. +.+..+.+.|+
T Consensus 150 ~l~~~~~~a~~~~~pi~vH~~~~~~~~~~~~~~l----------~~g~~~~H~~~g~~~~~~~~~~~~~~~~~~~~~~G~ 219 (338)
T cd01307 150 PLELAKKIAKEADLPLMVHIGSPPPILDEVVPLL----------RRGDVLTHCFNGKPNGIVDEEGEVLPLVRRARERGV 219 (338)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHh----------cCCCEEEeccCCCCCCCCCCCCcHHHHHHHHHhCCE
Confidence 37889999999999999998733 3333333321 11247888887654 56788888898
Q ss_pred EEEecccccccchhHHHHhhChhhhhhhhhhHHHHHHCCC-eeeecCCCCCCC------CCHHHHHHHHHcccCCCCCCC
Q 008063 435 VASMQPQHLLDDADSARKKLGVDRAERESYLFQSLLANNA-LLALGSDWPVAD------INPLCAIRTAMKRIPPGWDNA 507 (579)
Q Consensus 435 ~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~~Gi-~v~~gsD~~~~~------~~~~~~~~~~~~~~~~~~~~~ 507 (579)
.+++...... ....+.+.+.+.|+ +..++||.+... ......++...
T Consensus 220 ~~d~~~G~~~----------------~~~~~~~~l~~~G~~~~~lstD~~~~~~~~~p~~~l~~~l~~l~---------- 273 (338)
T cd01307 220 IFDVGHGTAS----------------FSFRVARAAIAAGLLPDTISSDIHGRNRTNGPVYALATTLSKLL---------- 273 (338)
T ss_pred EEEeCCCCCc----------------hhHHHHHHHHHCCCCCeeecCCccccCCCCCccccHHHHHHHHH----------
Confidence 8775532100 11123466778897 567999975421 11223333221
Q ss_pred CCCCCCCCHHHHHHHHcHHHHHhcccCCccccccCCCcccEEEeCCCC
Q 008063 508 WIPSERISLTDALIAHTLSAARACFLENDVGSLSPGKIADFVILSTSS 555 (579)
Q Consensus 508 ~~~~~~ls~~~al~~~T~npA~~lgl~~~~G~I~~G~~ADlvvld~~~ 555 (579)
..+++++++++++|.|||+++|++ .+|+|++|+.|||+|++.+-
T Consensus 274 ---~~gi~~ee~~~~~T~NpA~~lgl~-~~G~l~~G~~ad~~v~~~~~ 317 (338)
T cd01307 274 ---ALGMPLEEVIEAVTANPARMLGLA-EIGTLAVGYDADLTVFDLKD 317 (338)
T ss_pred ---HcCCCHHHHHHHHHHHHHHHcCCC-CCCccCCCCcCCEEEEeCCC
Confidence 236999999999999999999995 58999999999999998664
|
The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown. |
| >cd01295 AdeC Adenine deaminase (AdeC) directly deaminates adenine to form hypoxanthine | Back alignment and domain information |
|---|
Probab=99.87 E-value=7.8e-21 Score=200.00 Aligned_cols=169 Identities=21% Similarity=0.282 Sum_probs=115.1
Q ss_pred CHHHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhcCCCCCCceEeeccCCChhhHHHHhhCCcEEEeccccc
Q 008063 364 ELESLLSMTMASDKSGLQVAIHAIGDRANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLASGTAARFGDQGIVASMQPQHL 443 (579)
Q Consensus 364 ~~~~l~~~~~~a~~~g~~i~iH~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~H~~~~~~~~~~~~~~~~i~~~~~p~~~ 443 (579)
.++.+.+.++.+++.|.++.+|+.+... ..+..+.+ .+. ...|+....++.++++ +.|+.+.+++.+.
T Consensus 119 ~~~~l~~~i~~A~~~g~~v~~Ha~g~~~--~~L~a~l~----aGi-----~~dH~~~~~eea~e~l-~~G~~i~i~~g~~ 186 (422)
T cd01295 119 GDDEMLAKIQAAKKAGKPVDGHAPGLSG--EELNAYMA----AGI-----STDHEAMTGEEALEKL-RLGMYVMLREGSI 186 (422)
T ss_pred CcHHHHHHHHHHHhCCCEEEEeCCCCCH--HHHHHHHH----cCC-----CCCcCCCcHHHHHHHH-HCCCEEEEECccc
Confidence 4578899999999999999999987652 22222222 121 2248777666666666 6899999887764
Q ss_pred ccchhHHHHhhChhhhhhhhhhHHHHH-HCCCeeeecCCCCCCCCCHH--HHHHHHHcccCCCCCCCCCCCCCCCHHHHH
Q 008063 444 LDDADSARKKLGVDRAERESYLFQSLL-ANNALLALGSDWPVADINPL--CAIRTAMKRIPPGWDNAWIPSERISLTDAL 520 (579)
Q Consensus 444 ~~~~~~~~~~l~~~~~~~~~~~l~~l~-~~Gi~v~~gsD~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ls~~~al 520 (579)
..+.+... +.+. +.+.+++++||.+.. .++. ..+...+.+. ...++++++|+
T Consensus 187 ~~~~~~~~---------------~~l~~~~~~~i~l~TD~~~~-~~~~~~g~~~~v~r~a---------~~~g~s~~eal 241 (422)
T cd01295 187 AKNLEALL---------------PAITEKNFRRFMFCTDDVHP-DDLLSEGHLDYIVRRA---------IEAGIPPEDAI 241 (422)
T ss_pred HhhHHHHH---------------HhhhhccCCeEEEEcCCCCc-hhhhhcchHHHHHHHH---------HHcCCCHHHHH
Confidence 22111111 1111 257899999998522 1111 1111122111 23469999999
Q ss_pred HHHcHHHHHhcccCCccccccCCCcccEEEeCCCCCCChhhccCCeEEEEEECCEEeC
Q 008063 521 IAHTLSAARACFLENDVGSLSPGKIADFVILSTSSWEDFAAEVSASIEATYVSGVQAY 578 (579)
Q Consensus 521 ~~~T~npA~~lgl~~~~G~I~~G~~ADlvvld~~~~~~~~~~~~~~v~~v~v~G~~v~ 578 (579)
+++|.|||+++|+ +.+|+|+||+.|||++++.- ...++..||++|+.||
T Consensus 242 ~~aT~n~A~~~gl-~~~G~i~~G~~AD~vv~~~~--------~~~~v~~v~~~G~~v~ 290 (422)
T cd01295 242 QMATINPAECYGL-HDLGAIAPGRIADIVILDDL--------ENFNITTVLAKGIAVV 290 (422)
T ss_pred HHHhHHHHHHcCC-CCCcccCCCCcCCEEEECCC--------CCCceEEEEECCeEEE
Confidence 9999999999999 55899999999999999831 2347999999999886
|
This reaction is part of one of the adenine salvage pathways, as well as the degradation pathway. It is important for adenine utilization as a purine, as well as a nitrogen source in bacteria and archea. |
| >cd01318 DHOase_IIb Dihydroorotase (DHOase), subgroup IIb; DHOases catalyze the reversible interconversion of carbamoyl aspartate to dihydroorotate, a key reaction in pyrimidine biosynthesis | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.9e-21 Score=198.33 Aligned_cols=289 Identities=19% Similarity=0.182 Sum_probs=163.0
Q ss_pred HHHHHHHHHHhcCccEEEeCCcCCCCCccccchHHHHHHHHHHhhcCCCeeEEEEccCccchhhHHHHHHhcCCCCCCce
Q 008063 248 ALLRASNLALSRGVTTVVDFGRYYPGESVQLSWEDFADVYQWASYSEKMKIRVCLFFPLETWSSLADLINKTGHVLSDWV 327 (579)
Q Consensus 248 ~~~~~~~~~~~~Git~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (579)
.+..+.+.+...|+|++.++....| +..+.+.+....+.++. ...+++.++......++..+... .
T Consensus 25 d~~s~t~aA~~GGvTtv~~mPnt~P---~~~~~~~~~~~~~~a~~--~~~vd~~~~~~~~~~~~l~~~~~---------~ 90 (361)
T cd01318 25 DFVSGSRAAAAGGVTTVMDMPNTKP---PTTTAEALYEKLRLAAA--KSVVDYGLYFGVTGSEDLEELDK---------A 90 (361)
T ss_pred cHHHHHHHHHcCCCEEEEECCCCCC---CCCcHHHHHHHHHHhcc--CceeEEEEEEeecChhhHHHHHH---------h
Confidence 4566788899999999999864322 22233333333333322 22455554433322112333321 1
Q ss_pred EEceEEEEEcCccCCCcccccCCCCCCCCCCcccCCCHHHHHHHHHHHHHCCCeEEEEecchHHHHHHHH----------
Q 008063 328 YLGGVKAFADGSLGSNSALFHEPYADEPHNYGLQVMELESLLSMTMASDKSGLQVAIHAIGDRANDLVLD---------- 397 (579)
Q Consensus 328 ~~~g~k~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~i~iH~~g~~~~~~~~~---------- 397 (579)
...|+|.+...... . .. .+...+.+.++.+. .++.+|+....-......
T Consensus 91 ~~~g~k~f~~~~~~------------~-----~~-~~~~~l~~~~~~~~---~~v~~H~E~~~l~~~~~~~~~~~~~~~~ 149 (361)
T cd01318 91 PPAGYKIFMGDSTG------------D-----LL-DDEETLERIFAEGS---VLVTFHAEDEDRLRENRKELKGESAHPR 149 (361)
T ss_pred hCcEEEEEEecCCC------------C-----cC-CCHHHHHHHHHhcC---CeEEEeCCChHHHHHHHhhhhhccCCCC
Confidence 23456666421000 0 00 35677888777764 789999974321110000
Q ss_pred ---------HHHHHHHhcCCCCCCceEeeccCCChhhHHHHhhC--CcEEEecccccccchhHHHH------hhChhhhh
Q 008063 398 ---------MYKSVVVTTGKRDQRFRIEHAQHLASGTAARFGDQ--GIVASMQPQHLLDDADSARK------KLGVDRAE 460 (579)
Q Consensus 398 ---------~~~~~~~~~~~~~~~~~i~H~~~~~~~~~~~~~~~--~i~~~~~p~~~~~~~~~~~~------~l~~~~~~ 460 (579)
+..+...-.-..+.++++.|.... +.++++++. ++++.+||++...+.+.+.. ..+|.|..
T Consensus 150 ~~P~~aE~~av~r~~~la~~~~~~~hi~Hvs~~--~~~~~i~~~k~~vt~ev~ph~L~l~~~~~~~~~~~~k~~PPlr~~ 227 (361)
T cd01318 150 IRDAEAAAVATARALKLARRHGARLHICHVSTP--EELKLIKKAKPGVTVEVTPHHLFLDVEDYDRLGTLGKVNPPLRSR 227 (361)
T ss_pred cCCHHHHHHHHHHHHHHHHHHCCCEEEEeCCCH--HHHHHHHHhCCCeEEEeCHHHhhcCHHHHhcCCCeEEEeCCCCCH
Confidence 111111111113568889998764 356666655 89999999998766665542 12344444
Q ss_pred hhhhhHHHHHHCCCeeeecCCCC-CCCCCHHHHHHHHHcccCCC---CCC--CCCCCCCCCHHHHHHHHcHHHHHhcccC
Q 008063 461 RESYLFQSLLANNALLALGSDWP-VADINPLCAIRTAMKRIPPG---WDN--AWIPSERISLTDALIAHTLSAARACFLE 534 (579)
Q Consensus 461 ~~~~~l~~l~~~Gi~v~~gsD~~-~~~~~~~~~~~~~~~~~~~~---~~~--~~~~~~~ls~~~al~~~T~npA~~lgl~ 534 (579)
+....+...+++|.+.+++||.. ....+.+..++.+..+...- ... .+..+.+++++++++++|.|||+++|++
T Consensus 228 ~d~~aL~~~l~~G~id~i~SDh~P~~~~~k~~~~~~a~~G~~g~e~~l~~~~~~v~~~~l~l~~a~~~~t~nPA~~lgl~ 307 (361)
T cd01318 228 EDRKALLQALADGRIDVIASDHAPHTLEEKRKGYPAAPSGIPGVETALPLMLTLVNKGILSLSRVVRLTSHNPARIFGIK 307 (361)
T ss_pred HHHHHHHHHHhCCCCCEEeeCCCCCCHHHccCChhhCCCCCccHHHHHHHHHHHHHcCCCCHHHHHHHHhHHHHHHhCCC
Confidence 55666777899999999999953 32111110111111110000 000 0113456999999999999999999997
Q ss_pred CccccccCCCcccEEEeCCCCC-C-Chhhcc-------------CCeEEEEEECC
Q 008063 535 NDVGSLSPGKIADFVILSTSSW-E-DFAAEV-------------SASIEATYVSG 574 (579)
Q Consensus 535 ~~~G~I~~G~~ADlvvld~~~~-~-~~~~~~-------------~~~v~~v~v~G 574 (579)
+ +|+|++|+.|||+|+|.+.. . +.+.+. ..+|..||++|
T Consensus 308 ~-~G~i~~G~~ADlvv~d~~~~~~v~~~~~~s~~~~tp~~G~~l~G~v~~t~~~G 361 (361)
T cd01318 308 N-KGRIAEGYDADLTVVDLKEERTIRAEEFHSKAGWTPFEGFEVTGFPVMTIVRG 361 (361)
T ss_pred C-CCccCCCCcCCEEEEeCCCCEEECHHHccccCCCCCCCCCEEeeEEEEEEeCc
Confidence 6 79999999999999997642 2 222221 55777888776
|
This group contains the archeal members of the DHOase family. |
| >cd01317 DHOase_IIa Dihydroorotase (DHOase), subgroup IIa; DHOases catalyze the reversible interconversion of carbamoyl aspartate to dihydroorotate, a key reaction in pyrimidine biosynthesis | Back alignment and domain information |
|---|
Probab=99.85 E-value=8.4e-20 Score=189.48 Aligned_cols=180 Identities=19% Similarity=0.231 Sum_probs=118.4
Q ss_pred CCHHHHHHHHHHHHHCCCeEEEEecchHHHH------------------------HHHHHHHHHHHhcCCCCCCceEeec
Q 008063 363 MELESLLSMTMASDKSGLQVAIHAIGDRAND------------------------LVLDMYKSVVVTTGKRDQRFRIEHA 418 (579)
Q Consensus 363 ~~~~~l~~~~~~a~~~g~~i~iH~~g~~~~~------------------------~~~~~~~~~~~~~~~~~~~~~i~H~ 418 (579)
.+...+.++++.+++.|.++.+|+....-.+ ..+...-...+.+ +.+.++.|+
T Consensus 117 ~~~~~l~~~~~~~~~~g~~v~~H~E~~~~~~~~~~~~g~~~~~~~~~~~p~~~e~~~v~~~~~la~~~---~~~i~i~h~ 193 (374)
T cd01317 117 QDAELLRRALEYAAMLDLPIIVHPEDPSLAGGGVMNEGKVASRLGLPGIPPEAETIMVARDLELAEAT---GARVHFQHL 193 (374)
T ss_pred CCHHHHHHHHHHHHhcCCeEEEecCChhhhhccCccCChhhHHhCCCCCCHHHHHHHHHHHHHHHHHh---CCcEEEEeC
Confidence 5677899999999999999999995221110 0111111122222 357788888
Q ss_pred cCCCh-hhHHHHhhCC--cEEEecccccccchhHHHH------hhChhhhhhhhhhHHHHHHCCCeeeecCCCCCCCCC-
Q 008063 419 QHLAS-GTAARFGDQG--IVASMQPQHLLDDADSARK------KLGVDRAERESYLFQSLLANNALLALGSDWPVADIN- 488 (579)
Q Consensus 419 ~~~~~-~~~~~~~~~~--i~~~~~p~~~~~~~~~~~~------~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD~~~~~~~- 488 (579)
..-.. +.+...++.| +...++|++...+.+.+.. ..++.|..+...++..++++|+.+++|||.+.....
T Consensus 194 ss~~~l~~i~~~~~~G~~~~~e~~~h~L~ld~~~~~~~~~~~k~~Pplr~~~~~~~l~~~~~~G~i~~igsDh~p~~~~~ 273 (374)
T cd01317 194 STARSLELIRKAKAKGLPVTAEVTPHHLLLDDEALESYDTNAKVNPPLRSEEDREALIEALKDGTIDAIASDHAPHTDEE 273 (374)
T ss_pred CCHHHHHHHHHHHHCCCCEEEEecHHHHhcCHHHHhccCCceEEcCCCCCHHHHHHHHHHHhcCCceEEEcCCCCCCHHH
Confidence 74222 3444555555 6778888887655554422 223344434678899999999999999998654321
Q ss_pred ---HHH-----------HHHHHHcccCCCCCCCCCCCCCCCHHHHHHHHcHHHHHhcccCCccccccCCCcccEEEeCCC
Q 008063 489 ---PLC-----------AIRTAMKRIPPGWDNAWIPSERISLTDALIAHTLSAARACFLENDVGSLSPGKIADFVILSTS 554 (579)
Q Consensus 489 ---~~~-----------~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~npA~~lgl~~~~G~I~~G~~ADlvvld~~ 554 (579)
.+. .+..++... .....++++++++++|.|||+++|+++ |+|++|+.|||+++|.+
T Consensus 274 k~~~~~~~~~Gi~g~e~~l~~~~~~~--------~~~~~~~~~~~~~~~t~npA~~lgl~~--G~l~~G~~ADlvi~d~~ 343 (374)
T cd01317 274 KDLPFAEAPPGIIGLETALPLLWTLL--------VKGGLLTLPDLIRALSTNPAKILGLPP--GRLEVGAPADLVLFDPD 343 (374)
T ss_pred ccCCHhhCCCcHhHHHHHHHHHHHHH--------HHcCCCCHHHHHHHHHHHHHHHhCCCC--CcccCCCcCCEEEECCC
Confidence 111 111112111 123458999999999999999999973 99999999999999977
Q ss_pred C
Q 008063 555 S 555 (579)
Q Consensus 555 ~ 555 (579)
.
T Consensus 344 ~ 344 (374)
T cd01317 344 A 344 (374)
T ss_pred C
Confidence 4
|
This subgroup also contains proteins that lack the active site, like unc-33, a C.elegans protein involved in axon growth. |
| >cd01302 Cyclic_amidohydrolases Cyclic amidohydrolases, including hydantoinase, dihydropyrimidinase, allantoinase, and dihydroorotase, are involved in the metabolism of pyrimidines and purines, sharing the property of hydrolyzing the cyclic amide bond of each substrate to the corresponding N-carbamyl amino acids | Back alignment and domain information |
|---|
Probab=99.82 E-value=7.5e-19 Score=179.40 Aligned_cols=259 Identities=19% Similarity=0.180 Sum_probs=156.2
Q ss_pred HHHHHHHHHHHhcCccEEEeCCcCCCCCccccchHHHHHHHHHHhhcCCCeeEEEEccCcc---chhhHHHHHHhcCCCC
Q 008063 247 EALLRASNLALSRGVTTVVDFGRYYPGESVQLSWEDFADVYQWASYSEKMKIRVCLFFPLE---TWSSLADLINKTGHVL 323 (579)
Q Consensus 247 ~~~~~~~~~~~~~Git~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~~~---~~~~~~~~~~~~~~~~ 323 (579)
+.+..+.+.+...|+|++.++....| +..+.+.+....+.++... .+++.++.... +..+..+...
T Consensus 24 e~~~t~t~aA~~GG~Ttv~~mpn~~p---~~~~~~~~~~~~~~a~~~~--~~d~~~~~~~~~~~~~~el~~l~~------ 92 (337)
T cd01302 24 EDFESGSRAAAAGGVTTVIDMPNTGP---PPIDLPAIELKIKLAEESS--YVDFSFHAGIGPGDVTDELKKLFD------ 92 (337)
T ss_pred hHHHHHHHHHHhCCCcEEEECCCCCC---CCCcHHHHHHHHHHhCcCc--EeeEEEEEeccCccCHHHHHHHHH------
Confidence 35566788899999999999864322 2223333333444433322 34444332222 2222222211
Q ss_pred CCceEEceEEEEEcCccCCCcccccCCCCCCCCCCcccCCCHHHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHH
Q 008063 324 SDWVYLGGVKAFADGSLGSNSALFHEPYADEPHNYGLQVMELESLLSMTMASDKSGLQVAIHAIGDRANDLVLDMYKSVV 403 (579)
Q Consensus 324 ~~~~~~~g~k~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~i~iH~~g~~~~~~~~~~~~~~~ 403 (579)
....++|++...... . ....+.+.+.+.++.+.+.|.++.+|+. +.+...+
T Consensus 93 ---~Gv~g~K~f~~~~~~------------~-----~~~~~~~~l~~~~~~~~~~g~~v~~H~E------r~~~la~--- 143 (337)
T cd01302 93 ---AGINSLKVFMNYYFG------------E-----LFDVDDGTLMRTFLEIASRGGPVMVHAE------RAAQLAE--- 143 (337)
T ss_pred ---cCCcEEEEEEeccCC------------C-----ccccCHHHHHHHHHHHHhcCCeEEEeHH------HHHHHHH---
Confidence 123356665421000 0 0125678899999999999999999994 2222111
Q ss_pred HhcCCCCCCceEeeccCCCh-hhHHHHhhCC--cEEEecccccccchhHHHH------hhChhhhhhhhhhHHHHHHCCC
Q 008063 404 VTTGKRDQRFRIEHAQHLAS-GTAARFGDQG--IVASMQPQHLLDDADSARK------KLGVDRAERESYLFQSLLANNA 474 (579)
Q Consensus 404 ~~~~~~~~~~~i~H~~~~~~-~~~~~~~~~~--i~~~~~p~~~~~~~~~~~~------~l~~~~~~~~~~~l~~l~~~Gi 474 (579)
. .+.+.++.|...... +.++.+++.| +++.+||++...+.+.+.. ..++.|..+....+...+++|.
T Consensus 144 -~---~g~~l~i~Hiss~~~le~i~~ak~~g~~vt~ev~ph~L~l~~~~~~~~~~~~k~~Pplr~~~~~~~L~~~l~~G~ 219 (337)
T cd01302 144 -E---AGANVHIAHVSSGEALELIKFAKNKGVKVTCEVCPHHLFLDESMLRLNGAWGKVNPPLRSKEDREALWEGVKNGK 219 (337)
T ss_pred -H---hCCcEEEEeCCCHHHHHHHHHHHHCCCcEEEEcChhhheeCHHHhhCCCceEEEeCCCCCHHHHHHHHHHHhCCC
Confidence 1 245778999875332 4444455554 6778999998765544422 2344555456677888999999
Q ss_pred eeeecCCCCCCCCCH------HH-------HHHHHHcccCCCCCCCCCCCCCCCHHHHHHHHcHHHHHhcccCCcccccc
Q 008063 475 LLALGSDWPVADINP------LC-------AIRTAMKRIPPGWDNAWIPSERISLTDALIAHTLSAARACFLENDVGSLS 541 (579)
Q Consensus 475 ~v~~gsD~~~~~~~~------~~-------~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~npA~~lgl~~~~G~I~ 541 (579)
...++||........ +. .+...+... .....+.+++++++++++|.|||+++|+.+ .|+|+
T Consensus 220 id~i~sDh~p~~~~~k~~~~~~~~a~~G~~g~e~~l~~~-----~~~~~~~~i~~~~~~~~~s~~pA~~~gl~~-~g~i~ 293 (337)
T cd01302 220 IDTIASDHAPHSKEEKESGKDIWKAPPGFPGLETRLPIL-----LTEGVKRGLSLETLVEILSENPARIFGLYP-KGTIA 293 (337)
T ss_pred CCEEecCCCCCCHHHhccCCCcccCCCCcccHHHHHHHH-----HHHHHhcCCCHHHHHHHHHHHHHHHcCCCC-CCccc
Confidence 999999975432110 00 001100000 000123469999999999999999999976 69999
Q ss_pred CCCcccEEEeCCCC
Q 008063 542 PGKIADFVILSTSS 555 (579)
Q Consensus 542 ~G~~ADlvvld~~~ 555 (579)
+|+.|||+|+|.+.
T Consensus 294 ~G~~ADlvi~d~~~ 307 (337)
T cd01302 294 VGYDADLVIVDPKK 307 (337)
T ss_pred cCCcCCEEEEeCCC
Confidence 99999999999874
|
Allantoinases catalyze the degradation of purines, while dihydropyrimidinases and hydantoinases, a microbial counterpart of dihydropyrimidinase, are involved in pyrimidine degradation. Dihydroorotase participates in the de novo synthesis of pyrimidines. |
| >PF01979 Amidohydro_1: Amidohydrolase family; InterPro: IPR006680 This group of enzymes represents a large metal dependent hydrolase superfamily [] | Back alignment and domain information |
|---|
Probab=99.81 E-value=5.3e-19 Score=181.27 Aligned_cols=165 Identities=23% Similarity=0.236 Sum_probs=113.6
Q ss_pred CCHHHHHHHHHHHHH-----C-CCeEEEEecchHHH---------HHHHHHHHHHHHhcCCC-----CCCceEeeccCCC
Q 008063 363 MELESLLSMTMASDK-----S-GLQVAIHAIGDRAN---------DLVLDMYKSVVVTTGKR-----DQRFRIEHAQHLA 422 (579)
Q Consensus 363 ~~~~~l~~~~~~a~~-----~-g~~i~iH~~g~~~~---------~~~~~~~~~~~~~~~~~-----~~~~~i~H~~~~~ 422 (579)
++.+.+...++.+++ . +.++.+|+.+.... ...++.+ ...+.. +....+.|+.+++
T Consensus 141 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~h~~~~~ 216 (333)
T PF01979_consen 141 VSDEELREAVELAKEFLAAEKLGIPVHIHVAEGTGEVEAMTHLYGMSPIEAL----DHLGLLEEAIDDGVDLIAHGTHLS 216 (333)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHTHEEEEEESSSHHHHCCCHHHHSHHHHHHH----HHHHSCHHHHHHHCEEEEEHTTSE
T ss_pred chhhhhhhHHhhhhhHHHHHhhcccceeeeccCcccceeEeeeeeccchhhh----ccchhhhhhcccccceeeccccCC
Confidence 678889999999988 3 99999999865443 0011111 111111 3477899999999
Q ss_pred hhhHHHHhhCCcEEEecccccccchhHHHH---hhCh----hhhhhhhhhHHHHHHC-CCeeeecCCCCCCCCCHHHHHH
Q 008063 423 SGTAARFGDQGIVASMQPQHLLDDADSARK---KLGV----DRAERESYLFQSLLAN-NALLALGSDWPVADINPLCAIR 494 (579)
Q Consensus 423 ~~~~~~~~~~~i~~~~~p~~~~~~~~~~~~---~l~~----~~~~~~~~~l~~l~~~-Gi~v~~gsD~~~~~~~~~~~~~ 494 (579)
+++++++++.+..+..||..+........+ ..+. ........++..+.+. |+. +|||+.. ++++
T Consensus 217 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~--lgtDg~~------~~l~ 288 (333)
T PF01979_consen 217 DEEIELLKETGIGIIHCPISNDSAPHKPGKAIMMDGTAEGIYGLGSGGAPLFRMLDKMGVN--LGTDGVA------EELK 288 (333)
T ss_dssp HHHHHHHHHHTHEEEEEHHHHHHHHHHTTHHSETTBSBTSBSCTTHHHHHHHHHHHCTTHE--ETTCTTC------HHHH
T ss_pred HHHhhhhhccCCccccccchhhhhccccccccccchhccccccccccccchhhhhhhcccc--ccccccc------cccc
Confidence 999999999999999999876420000000 0000 0001333456666666 888 9999322 6666
Q ss_pred HHHcccCCCCCCCCCCCCCCCHHHHHHHHcHHHHHhcccCCccccccCCCcccEEEeC
Q 008063 495 TAMKRIPPGWDNAWIPSERISLTDALIAHTLSAARACFLENDVGSLSPGKIADFVILS 552 (579)
Q Consensus 495 ~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~npA~~lgl~~~~G~I~~G~~ADlvvld 552 (579)
.++.. +++++++|+|+|.|||+.||+++++|+|++||+|||||||
T Consensus 289 ~~~~~-------------~~~~~~~l~~aT~n~Ak~lg~~~~~G~i~~G~~ADlvv~D 333 (333)
T PF01979_consen 289 LFVRL-------------GISPEEALKMATINPAKILGLDDDKGSIEPGKDADLVVLD 333 (333)
T ss_dssp HHHHH-------------HSHHHHHHHHHTHHHHHHTTSTTTSSSSSTTSB--EEEEE
T ss_pred ccccc-------------cccccccccccchhHHHHcCCCCCEEEeCcCCCcCEEEeC
Confidence 66543 2899999999999999999998889999999999999997
|
The family includes adenine deaminase (3.5.4.2 from EC) that hydrolyses adenine to form hypoxanthine and ammonia. The adenine deaminase reaction is important for adenine utilization as a purine and also as a nitrogen source []. This family also includes dihydroorotase and N-acetylglucosamine-6-phosphate deacetylases (3.5.1.25 from EC). These enzymes catalyse the reaction: |
| >cd01305 archeal_chlorohydrolases Predicted chlorohydrolases | Back alignment and domain information |
|---|
Probab=99.80 E-value=8.8e-19 Score=173.13 Aligned_cols=136 Identities=18% Similarity=0.134 Sum_probs=103.6
Q ss_pred HHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhcCCCCCCceEeeccCCChhhHHHHhhCCcEEEecccccccch
Q 008063 368 LLSMTMASDKSGLQVAIHAIGDRANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLASGTAARFGDQGIVASMQPQHLLDDA 447 (579)
Q Consensus 368 l~~~~~~a~~~g~~i~iH~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~H~~~~~~~~~~~~~~~~i~~~~~p~~~~~~~ 447 (579)
++++++.|+++|+++++|+.+..... ....++.+.. .+ ...+.|+.++++++++++++.|+.+++||.++.
T Consensus 127 l~~~~~~A~~~g~~v~~H~~e~~~~~-g~~~i~~~~~-~~----~~~i~H~~~l~~~~~~~la~~g~~v~~~P~sn~--- 197 (263)
T cd01305 127 LEDILELLRRRGKLFAIHASETRESV-GMTDIERALD-LE----PDLLVHGTHLTDEDLELVRENGVPVVLCPRSNL--- 197 (263)
T ss_pred HHHHHHHHHHCCCeeEEecCCCCCCC-CchhHHHHHh-CC----CCEEEEcCCCCHHHHHHHHHcCCcEEEChhhHH---
Confidence 99999999999999999998653210 0001111111 11 345899999999999999999999999998765
Q ss_pred hHHHHhhChhhhhhhhhhHHHHHHCCCeeeecCCCCC-CCCCHHHHHHHHHcccCCCCCCCCCCCCCCCHHHHHHHHcHH
Q 008063 448 DSARKKLGVDRAERESYLFQSLLANNALLALGSDWPV-ADINPLCAIRTAMKRIPPGWDNAWIPSERISLTDALIAHTLS 526 (579)
Q Consensus 448 ~~~~~~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~n 526 (579)
.++ ...+|++.++++|+++++|||... .+.+++.+++.++.+... ...++++++|+++|.|
T Consensus 198 -----~l~-----~g~~p~~~l~~~Gv~v~lGtD~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~l~~aT~~ 259 (263)
T cd01305 198 -----YFG-----VGIPPVAELLKLGIKVLLGTDNVMVNEPDMWAEMEFLAKYSRL--------QGYLSPLEILRMATVN 259 (263)
T ss_pred -----HhC-----CCCCCHHHHHHCCCcEEEECCCCccCCCCHHHHHHHHHHHhcc--------cccCCHHHHHHHHhhc
Confidence 222 445689999999999999999753 457999999988764321 1157999999999999
Q ss_pred HHHh
Q 008063 527 AARA 530 (579)
Q Consensus 527 pA~~ 530 (579)
+|++
T Consensus 260 gA~~ 263 (263)
T cd01305 260 AAEF 263 (263)
T ss_pred cccC
Confidence 9974
|
These metallo-dependent hydrolases from archea are part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. They have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. Some members of this subgroup are predicted to be chlorohyrolases. |
| >PRK06886 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=99.78 E-value=4.9e-17 Score=163.03 Aligned_cols=267 Identities=13% Similarity=0.096 Sum_probs=172.5
Q ss_pred EEEhHhHHHHhcccCCCCCHHHHHHHHHHHHHHHHhcCccEEEeCCcCCCCCccccchHHHHHHHHHHhhcCCCeeEEEE
Q 008063 223 GLLIDAAMKLILPWIPEVSVDERREALLRASNLALSRGVTTVVDFGRYYPGESVQLSWEDFADVYQWASYSEKMKIRVCL 302 (579)
Q Consensus 223 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Git~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~ 302 (579)
|.+.|+. +...+.-+..+.+++++.....++.++.+|+|.+..+-... .......++...++.++.+ ..+.+.++.
T Consensus 46 g~l~e~i-~~~~~~k~~~t~~dv~~Ra~~~l~~~~~~Gtt~iRtHvdvd-~~~~l~~~~a~~~~r~~~~--~~idlq~va 121 (329)
T PRK06886 46 ANLQQKW-DLVDEVKRNSTVEDYYARFSQAIELMISQGVTAFGTFVDID-PICEDRAIIAAHKAREVYK--HDIILKFAN 121 (329)
T ss_pred CCHHHHH-HHHHHHhccCCHHHHHHHHHHHHHHHHHcCcccEeeeeccC-CCccccHHHHHHHHHHHhc--CcceEEEEe
Confidence 4455542 22333445678899999999999999999999998764221 1112344555555554443 445566654
Q ss_pred ccCccch--hhHHHHHHhcCCCCCCceEEceEEEEEcCccCCCcccccCCCCCCCCCCcccCCCHHHHHHHHHHHHHCCC
Q 008063 303 FFPLETW--SSLADLINKTGHVLSDWVYLGGVKAFADGSLGSNSALFHEPYADEPHNYGLQVMELESLLSMTMASDKSGL 380 (579)
Q Consensus 303 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~k~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~ 380 (579)
+ |...+ +...++....... .+ .+++. |+.+.. -...+.+.+..+++.|+++|+
T Consensus 122 f-Pq~g~~~~~~~~l~~~al~~-ad-------------vvGGi------P~~~~~----~~~~~~e~l~~~~~lA~~~g~ 176 (329)
T PRK06886 122 Q-TLKGVIEPTAKKWFDIGSEM-VD-------------MIGGL------PYRDEL----DYGRGLEAMDILLDTAKSLGK 176 (329)
T ss_pred c-ChhhccCccHHHHHHHHHHh-CC-------------EEeCc------cCCcCC----CCCCCHHHHHHHHHHHHHcCC
Confidence 3 21111 1112222111100 01 11111 222110 011567899999999999999
Q ss_pred eEEEEecch-HHHHHHHHHHHHHHHhcCCCCCCceEeeccCCChhh-------HHHHhhCCcEEEecccccccchhHHHH
Q 008063 381 QVAIHAIGD-RANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLASGT-------AARFGDQGIVASMQPQHLLDDADSARK 452 (579)
Q Consensus 381 ~i~iH~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~i~H~~~~~~~~-------~~~~~~~~i~~~~~p~~~~~~~~~~~~ 452 (579)
++++|+.+. ......++.+.+.....|..+ +..+.||..+++.+ ++++++.|+.+++||.++...+... .
T Consensus 177 ~Id~Hlde~~~~~~~~le~l~~~~~~~Gl~g-rV~~sH~~~L~~~~~~~~~~~i~~La~agi~Vv~~P~snl~l~~~~-~ 254 (329)
T PRK06886 177 MVHVHVDQFNTPKEKETEQLCDKTIEHGMQG-RVVAIHGISIGAHSKEYRYRLYQKMREADMMVIACPMAWIDSNRKE-D 254 (329)
T ss_pred CeEEeECCCCchhHHHHHHHHHHHHHcCCCC-CEEEEEeccccCcChhhHHHHHHHHHHcCCeEEECchhhhhhcccc-c
Confidence 999999843 223445555555555677765 89999999998765 9999999999999999865211000 0
Q ss_pred hhChhhhhhhhhhHHHHHHCCCeeeecCCCCCC------CCCHHHHHHHHHcccCCCCCCCCCCCCCCCHHHHHHHHcHH
Q 008063 453 KLGVDRAERESYLFQSLLANNALLALGSDWPVA------DINPLCAIRTAMKRIPPGWDNAWIPSERISLTDALIAHTLS 526 (579)
Q Consensus 453 ~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~n 526 (579)
..+ .. +..+|++.|.++||+|++|||+..+ ..++++.++.+...... .+++++++|+|.|
T Consensus 255 ~~p--~~-rGv~pv~eL~~aGV~V~lGtDnv~D~~~p~g~~Dmle~~~l~~~~~~~-----------~~~~~~l~maT~~ 320 (329)
T PRK06886 255 LMP--FH-NALTPADEMIPEGITVALGTDNICDYMVPLCEGDMWQELSLLAAGCRF-----------YDLDEMVNIASIN 320 (329)
T ss_pred cCc--CC-CCCCCHHHHHHCCCeEEEecCCCcccCCCCCCCCHHHHHHHHHHHcCC-----------CCHHHHHHHHhhh
Confidence 011 11 5678999999999999999998643 47888888887653321 3799999999999
Q ss_pred HHHhcccC
Q 008063 527 AARACFLE 534 (579)
Q Consensus 527 pA~~lgl~ 534 (579)
+|+.||++
T Consensus 321 gAraLgl~ 328 (329)
T PRK06886 321 GRKVLGLE 328 (329)
T ss_pred HHHHhCCC
Confidence 99999985
|
|
| >cd01306 PhnM PhnM is believed to be a subunit of the membrane associated C-P lyase complex | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.6e-17 Score=166.00 Aligned_cols=165 Identities=19% Similarity=0.201 Sum_probs=118.7
Q ss_pred CCHHHHHHHHHHHHHCCCeEEEEecch-HHHHHHHHHHHHHHHhcCCCCCCceEeeccCCChhhHHHHhhCCcEEEeccc
Q 008063 363 MELESLLSMTMASDKSGLQVAIHAIGD-RANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLASGTAARFGDQGIVASMQPQ 441 (579)
Q Consensus 363 ~~~~~l~~~~~~a~~~g~~i~iH~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~i~H~~~~~~~~~~~~~~~~i~~~~~p~ 441 (579)
++.+.++++++.|++.|+++.+|+... ..++...+ .| ...+.| ..+.+.+..+++.|+.+..++.
T Consensus 160 ~~~~~~~~iv~~A~~~gl~vasH~d~~~~~v~~a~~--------~G----v~~~E~--p~t~e~a~~a~~~G~~vv~gap 225 (325)
T cd01306 160 YAPANRSELAALARARGIPLASHDDDTPEHVAEAHE--------LG----VVISEF--PTTLEAAKAARELGLQTLMGAP 225 (325)
T ss_pred cCHHHHHHHHHHHHHCCCcEEEecCCChHHHHHHHH--------CC----CeeccC--CCCHHHHHHHHHCCCEEEecCc
Confidence 457889999999999999999999643 22222222 12 122333 3688899999999999987754
Q ss_pred ccccchhHHHHhhChhhhhhhhhhHHHHHHCCCeeeecCCCCCCCCCHHHHHHHHHcccCCCCCCCCCCCCCCCHHHHHH
Q 008063 442 HLLDDADSARKKLGVDRAERESYLFQSLLANNALLALGSDWPVADINPLCAIRTAMKRIPPGWDNAWIPSERISLTDALI 521 (579)
Q Consensus 442 ~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~ 521 (579)
..... +. .....+++.+++.|+.++++||.. +.+.+....... ...++++.++|+
T Consensus 226 n~lrg--------~s---~~g~~~~~~ll~~Gv~~al~SD~~--p~sll~~~~~la------------~~~gl~l~eAl~ 280 (325)
T cd01306 226 NVVRG--------GS---HSGNVSARELAAHGLLDILSSDYV--PASLLHAAFRLA------------DLGGWSLPEAVA 280 (325)
T ss_pred ccccC--------cc---ccccHhHHHHHHCCCeEEEEcCCC--cHhHHHHHHHHH------------HHcCCCHHHHHH
Confidence 32100 00 023456889999999999999984 223333332222 234699999999
Q ss_pred HHcHHHHHhcccCCccccccCCCcccEEEeCCCCCCChhhccCCeEEEEEECC
Q 008063 522 AHTLSAARACFLENDVGSLSPGKIADFVILSTSSWEDFAAEVSASIEATYVSG 574 (579)
Q Consensus 522 ~~T~npA~~lgl~~~~G~I~~G~~ADlvvld~~~~~~~~~~~~~~v~~v~v~G 574 (579)
++|.|||+.+|+++ +|+|++|+.||||+++.+. ....+..||++|
T Consensus 281 ~aT~nPA~~lGl~d-~G~I~~G~~ADlvvvd~~~-------~~p~v~~v~~~G 325 (325)
T cd01306 281 LVSANPARAVGLTD-RGSIAPGKRADLILVDDMD-------GVPVVRTVWRGG 325 (325)
T ss_pred HHhHHHHHHcCCCC-CCCcCCCCCCCEEEEeCCC-------CCCccceEEeCc
Confidence 99999999999985 7999999999999999763 133788999988
|
C-P lyase is thought to catalyze the direct cleavage of inactivated C-P bonds to yield inorganic phosphate and the corresponding hydrocarbons. It is responsible for cleavage of alkylphosphonates, which are utilized as sole phosphorus sources by many bacteria. |
| >COG1229 FwdA Formylmethanofuran dehydrogenase subunit A [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.77 E-value=3e-17 Score=159.36 Aligned_cols=107 Identities=16% Similarity=0.069 Sum_probs=71.8
Q ss_pred HCCCeeeecCCCCCCCC--CHHHHHHHHHcccCC------------CCCCCCCCCCCCCHHHHHHHHcHHHHHhcccCCc
Q 008063 471 ANNALLALGSDWPVADI--NPLCAIRTAMKRIPP------------GWDNAWIPSERISLTDALIAHTLSAARACFLEND 536 (579)
Q Consensus 471 ~~Gi~v~~gsD~~~~~~--~~~~~~~~~~~~~~~------------~~~~~~~~~~~ls~~~al~~~T~npA~~lgl~~~ 536 (579)
+.--.+.+.||+|...+ ...+.|-+.+....+ ..+..-.-+..++++|+..+.-.+|||.||++++
T Consensus 381 ~dp~kv~lTTD~PNgGpFt~YP~v~awlMS~k~R~~~i~~~hkwa~~rs~l~~idrE~t~~eia~~TRa~~ak~lgl~e~ 460 (575)
T COG1229 381 NDPWKVVLTTDSPNGGPFTRYPEVMAWLMSEKYREEWIEGVHKWAQDRSALAGIDRELTLYELAIMTRANPAKVLGLSER 460 (575)
T ss_pred cCCCeEEEeccCCCCCCccccHHHHHHHHhHHHHHHHHhhhhHhhhhhcccccccccccHHHHHHHHhcChhhhcccccc
Confidence 33456889999886642 222222222211100 1112223455689999999999999999999999
Q ss_pred cccccCCCcccEEEeCCCCCC-C----hhhccC--CeEEEEEECCEEe
Q 008063 537 VGSLSPGKIADFVILSTSSWE-D----FAAEVS--ASIEATYVSGVQA 577 (579)
Q Consensus 537 ~G~I~~G~~ADlvvld~~~~~-~----~~~~~~--~~v~~v~v~G~~v 577 (579)
+|.|-+|.+||+.|.|-||.+ | .+.+.+ .+...|+++|++|
T Consensus 461 kGhLg~GadadIaiYdlnP~~vDps~dye~v~kaf~~A~ytlK~GeIv 508 (575)
T COG1229 461 KGHLGVGADADIAIYDLNPEQVDPSNDYEKVEKAFRKAAYTLKGGEIV 508 (575)
T ss_pred cCccCcCccCceEEEecChhhcCCcccHHHHHHHHhheeEEecCceEE
Confidence 999999999999999999864 3 232221 2667788888776
|
|
| >COG3653 N-acyl-D-aspartate/D-glutamate deacylase [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.4e-15 Score=148.91 Aligned_cols=65 Identities=35% Similarity=0.710 Sum_probs=57.0
Q ss_pred CccEEEEcCeEEeCCCCCCeeeEEEEECCEEEEecChHHHHhhccCCC---eEEeCCCCeeecccccccccccc
Q 008063 44 EADLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGT---NVLNLQGKVVVPGFIDSHVHFIP 114 (579)
Q Consensus 44 ~~~~likn~~v~~~~~~~~~~~~v~I~~GkI~~Ig~~~~~~~~~~~~~---~viD~~g~~V~PG~ID~H~H~~~ 114 (579)
.-+++|+++.|+|++|..+...+|.|+||+|++|+.... .+. +.||+.|++|.|||||+|+|-..
T Consensus 5 ~YD~ViR~g~ifDGtGnp~f~tdvgIrDGvIaav~kg~~------dg~~~~eevDaagriVaPGFIDvHtHyD~ 72 (579)
T COG3653 5 TYDVVIRDGLIFDGTGNPPFTTDVGIRDGVIAAVAKGAL------DGTGCPEEVDAAGRIVAPGFIDVHTHYDA 72 (579)
T ss_pred eeeEEEeeceEEeCCCCCccccccccccceEEEEecccc------cccCCCeeecccCcEecccEEEeeecccc
Confidence 457999999999999988888899999999999997543 333 78999999999999999999743
|
|
| >PF13147 Amidohydro_4: Amidohydrolase; PDB: 3SFW_B 2FTW_A 2PUZ_B 2GOK_B 3HM7_E 3D6N_A 1XRT_A 1XRF_A 1YNY_B 1K1D_F | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.8e-15 Score=150.66 Aligned_cols=77 Identities=32% Similarity=0.360 Sum_probs=61.1
Q ss_pred hhhhhHHHHHHCCCeeeecCCCCC----CCCCHHHHHHHHHcccCCCCCCCCCCCCCCCHHHHHHHHcHHHHHhcccCCc
Q 008063 461 RESYLFQSLLANNALLALGSDWPV----ADINPLCAIRTAMKRIPPGWDNAWIPSERISLTDALIAHTLSAARACFLEND 536 (579)
Q Consensus 461 ~~~~~l~~l~~~Gi~v~~gsD~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~npA~~lgl~~~ 536 (579)
.....++.++++|++++++||... .+.+.+..+...+. ..|+++++|++++|.|||++||++++
T Consensus 224 ~~~~~~~~l~~~Gv~~~l~sD~~~~~~~~~~~~~~~~~~~~~------------~~gl~~~~al~~~T~~pA~~lgl~~~ 291 (304)
T PF13147_consen 224 EDRAALRELLEAGVPVALGSDHAPSSTEGSGDLLHEAMRLAV------------RAGLSPEEALRAATSNPARILGLDDD 291 (304)
T ss_dssp HHHHHHHHHHHTTSSEEEEE-BBTTTTTCTTTHHHHHHHHHH------------HTSSTHHHHHHHHTHHHHHHTTBTTT
T ss_pred hhhHHHHHHHhCCCeEEEEcCCcccccccccccchhhhhHHh------------hcCCCHHHHHHHHHHHHHHHhCCCCC
Confidence 556678899999999999999875 33445544444433 24699999999999999999999878
Q ss_pred cccccCCCcccEE
Q 008063 537 VGSLSPGKIADFV 549 (579)
Q Consensus 537 ~G~I~~G~~ADlv 549 (579)
+|+|++||.||||
T Consensus 292 ~G~i~~G~~ADlv 304 (304)
T PF13147_consen 292 KGSIAPGKDADLV 304 (304)
T ss_dssp SSSTSTTSB-EEE
T ss_pred CccCCCCCCCCcC
Confidence 9999999999997
|
... |
| >cd01316 CAD_DHOase The eukaryotic CAD protein is a trifunctional enzyme of carbamoylphosphate synthetase-aspartate transcarbamoylase-dihydroorotase, which catalyzes the first three steps of de novo pyrimidine nucleotide biosynthesis | Back alignment and domain information |
|---|
Probab=99.64 E-value=7.4e-14 Score=142.01 Aligned_cols=182 Identities=14% Similarity=0.184 Sum_probs=108.4
Q ss_pred HHHHCCCeEEEEecchHHHHHHHHHHHHHHHhcCCCCCCceEeeccCCCh-hhHHHHhhCC--cEEEecccccccchhHH
Q 008063 374 ASDKSGLQVAIHAIGDRANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLAS-GTAARFGDQG--IVASMQPQHLLDDADSA 450 (579)
Q Consensus 374 ~a~~~g~~i~iH~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~H~~~~~~-~~~~~~~~~~--i~~~~~p~~~~~~~~~~ 450 (579)
.+...+.++.+|+.. ..+...+...+. .+.+.++.|...... +.++..++.| +++.+||++...+.+.+
T Consensus 120 ~~~~~~~p~~~~~e~-~~~~~~l~la~~-------~g~~lhi~HiSt~~~~~~i~~ak~~g~~vt~ev~phhL~l~~~~~ 191 (344)
T cd01316 120 NAWPSTKPIVTHAKS-QTLAAVLLLASL-------HNRSIHICHVSSKEEINLIRLAKARGLKVTCEVSPHHLFLSQDDL 191 (344)
T ss_pred HhcccCCCeEEehhh-HHHHHHHHHHHH-------HCCCEEEEeCCCHHHHHHHHHHHHCCCcEEEEechHHeeccHHHh
Confidence 344457888888842 222222322221 245788999876332 3333344444 78899999998766654
Q ss_pred ----HHhhChhhhhhhhhhHHHHHHCCCeeeecCCCCCCCCC---------HHHHHHHHHcccCCCCCCCCCCCCCCCHH
Q 008063 451 ----RKKLGVDRAERESYLFQSLLANNALLALGSDWPVADIN---------PLCAIRTAMKRIPPGWDNAWIPSERISLT 517 (579)
Q Consensus 451 ----~~~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~ls~~ 517 (579)
.+..+|.|..+....+.+.+. ....++||.+..... ....+...+.-.. ....+.++++.
T Consensus 192 ~~~~~k~~PPLR~~~dr~aL~~~l~--~id~i~SDHaP~~~~~K~~~~a~~G~~g~e~~lpl~~-----~~v~~~~i~l~ 264 (344)
T cd01316 192 PRGQYEVRPFLPTREDQEALWENLD--YIDCFATDHAPHTLAEKTGNKPPPGFPGVETSLPLLL-----TAVHEGRLTIE 264 (344)
T ss_pred hcCCceeCCCCcCHHHHHHHHHHHh--cCCEEEcCCCCCCHHHhcCCCCCCCcccHHHHHHHHH-----HHHHcCCCCHH
Confidence 334455555455555555554 367999997543211 1111111111000 01134569999
Q ss_pred HHHHHHcHHHHHhcccCCccccccCCCcccEEEeCCC-CCC-------------Chhhc-cCCeEEEEEECCEEeC
Q 008063 518 DALIAHTLSAARACFLENDVGSLSPGKIADFVILSTS-SWE-------------DFAAE-VSASIEATYVSGVQAY 578 (579)
Q Consensus 518 ~al~~~T~npA~~lgl~~~~G~I~~G~~ADlvvld~~-~~~-------------~~~~~-~~~~v~~v~v~G~~v~ 578 (579)
+++++.+.|||+.+|+.. + .+||||+|.+ .|. +++.. ...+|..||++|++||
T Consensus 265 ~l~~~~s~nPAk~~gl~~-------~-~~~lvi~d~~~~~~v~~~~~~s~~~~sp~~G~~l~G~v~~ti~rG~~v~ 332 (344)
T cd01316 265 DIVDRLHTNPKRIFNLPP-------Q-SDTYVEVDLDEEWTIPKNPLQSKKGWTPFEGKKVKGKVQRVVLRGETAF 332 (344)
T ss_pred HHHHHHHHhHHHHhCCCC-------C-CCCEEEEeCCCcEEEChhhccccCCCCCCCCCEEeeEEEEEEECCEEEE
Confidence 999999999999999864 2 3479999954 222 12211 1669999999999987
|
Dihydroorotase (DHOase) catalyzes the third step, the reversible interconversion of carbamoyl aspartate to dihydroorotate. |
| >KOG3892 consensus N-acetyl-glucosamine-6-phosphate deacetylase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.3e-14 Score=132.35 Aligned_cols=60 Identities=38% Similarity=0.471 Sum_probs=55.3
Q ss_pred CCCCCCHHHHHHHHcHHHHHhcccCCccccccCCCcccEEEeCCCCCCChhhccCCeEEEEEECCEEeCC
Q 008063 510 PSERISLTDALIAHTLSAARACFLENDVGSLSPGKIADFVILSTSSWEDFAAEVSASIEATYVSGVQAYP 579 (579)
Q Consensus 510 ~~~~ls~~~al~~~T~npA~~lgl~~~~G~I~~G~~ADlvvld~~~~~~~~~~~~~~v~~v~v~G~~v~~ 579 (579)
+..+.+.+-||+++|..||+.||+++.+|++..|.+||||++|.+. .|..||+.|+.||.
T Consensus 345 kATgCs~e~AleaAtlhPAqlLg~ek~KGTLDfG~dADFVllDd~l----------~V~aT~isG~~V~~ 404 (407)
T KOG3892|consen 345 KATGCSMESALEAATLHPAQLLGLEKSKGTLDFGADADFVLLDDSL----------HVQATYISGELVWQ 404 (407)
T ss_pred HhcCCcHHHHHhhhccChHHhhccccccccccccccCceEEEccce----------EEEEEEEccEEEEe
Confidence 3456899999999999999999999999999999999999999654 89999999999984
|
|
| >cd01292 metallo-dependent_hydrolases Superfamily of metallo-dependent hydrolases (also called amidohydrolase superfamily) is a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.1e-12 Score=130.02 Aligned_cols=234 Identities=27% Similarity=0.282 Sum_probs=150.2
Q ss_pred CCCHHHHHHHHHHHHHHHHhcCccEEEeCCcCCCCCccccchHHHHHHHHHHhhcCCCeeEEEEccCccch---------
Q 008063 239 EVSVDERREALLRASNLALSRGVTTVVDFGRYYPGESVQLSWEDFADVYQWASYSEKMKIRVCLFFPLETW--------- 309 (579)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~Git~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~~~~~--------- 309 (579)
..++++.+.........+.+.|+|++.++....+... .........+.+.+.. ++++.........
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~Gvttv~~~~~~~~~~~---~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 101 (275)
T cd01292 27 ELSPEDLYEDTLRALEALLAGGVTTVVDMGSTPPPTT---TKAAIEAVAEAARASA--GIRVVLGLGIPGVPAAVDEDAE 101 (275)
T ss_pred ccCHHHHHHHHHHHHHHHHhcCceEEEeeEeecCccc---cchHHHHHHHHHHHhc--CeeeEEeccCCCCccccchhHH
Confidence 3456788888899999999999999999765332211 1122333333333322 3444432211111
Q ss_pred hhHHHHHHhcCCCCCCceEEceEEEEEcCccCCCcccccCCCCCCCCCCcccCCCHHHHHHHHHHHHHCCCeEEEEecch
Q 008063 310 SSLADLINKTGHVLSDWVYLGGVKAFADGSLGSNSALFHEPYADEPHNYGLQVMELESLLSMTMASDKSGLQVAIHAIGD 389 (579)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~g~k~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~i~iH~~g~ 389 (579)
+...+.+..... ....|++.. .++.. ...+.+.++++++.++++++++.+|+.+.
T Consensus 102 ~~~~~~i~~~~~-----~~~~gi~~~-------------~~~~~-------~~~~~~~~~~~~~~a~~~~~~i~~H~~~~ 156 (275)
T cd01292 102 ALLLELLRRGLE-----LGAVGLKLA-------------GPYTA-------TGLSDESLRRVLEEARKLGLPVVIHAGEL 156 (275)
T ss_pred HHHHHHHHHHHh-----cCCeeEeeC-------------CCCCC-------CCCCcHHHHHHHHHHHHcCCeEEEeeCCc
Confidence 111122211000 112223221 11110 00367899999999999999999999755
Q ss_pred HH----HHHHHHHHHHHHHhcCCCCCCceEeeccCCChhhHHHHhhCCcEEEecccccccchhHHHHhhChhhhhhhhhh
Q 008063 390 RA----NDLVLDMYKSVVVTTGKRDQRFRIEHAQHLASGTAARFGDQGIVASMQPQHLLDDADSARKKLGVDRAERESYL 465 (579)
Q Consensus 390 ~~----~~~~~~~~~~~~~~~~~~~~~~~i~H~~~~~~~~~~~~~~~~i~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~ 465 (579)
.. +...++... . +.+..+.|+...+++.++++++.|+.+++||.++.... .+. ....+
T Consensus 157 ~~~~~~~~~~~~~~~-------~-~~~~~~~H~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~---------~~~-~~~~~ 218 (275)
T cd01292 157 PDPTRALEDLVALLR-------L-GGRVVIGHVSHLDPELLELLKEAGVSLEVCPLSNYLLG---------RDG-EGAEA 218 (275)
T ss_pred ccCccCHHHHHHHHh-------c-CCCEEEECCccCCHHHHHHHHHcCCeEEECCccccccc---------CCc-CCccc
Confidence 42 333333221 1 45889999999999999999999999999999875321 011 44557
Q ss_pred HHHHHHCCCeeeecCCCCCC--CCCHHHHHHHHHcccCCCCCCCCCCCCCCCHHHHHHHHcHHHHHh
Q 008063 466 FQSLLANNALLALGSDWPVA--DINPLCAIRTAMKRIPPGWDNAWIPSERISLTDALIAHTLSAARA 530 (579)
Q Consensus 466 l~~l~~~Gi~v~~gsD~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~npA~~ 530 (579)
++.+++.|+++++|||++.. ..+++..++.++.... .+++.+++++++|.|||++
T Consensus 219 ~~~~~~~g~~~~lgTD~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~t~n~a~~ 275 (275)
T cd01292 219 LRRLLELGIRVTLGTDGPPHPLGTDLLALLRLLLKVLR----------LGLSLEEALRLATINPARA 275 (275)
T ss_pred HHHHHHCCCcEEEecCCCCCCCCCCHHHHHHHHHHHHh----------cCCCHHHHHHHHhccccCC
Confidence 89999999999999998764 4788888887765332 2389999999999999974
|
The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The family includes urease alpha, adenosine deaminase, phosphotriesterase dihydroorotases, allantoinases, hydantoinases, AMP-, adenine and cytosine deaminases, imidazolonepropionase, aryldialkylphosphatase, chlorohydrolases, formylmethanofuran dehydrogenases and others. |
| >cd01294 DHOase Dihydroorotase (DHOase) catalyzes the reversible interconversion of carbamoyl aspartate to dihydroorotate, a key reaction in the pyrimidine biosynthesis | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.7e-12 Score=131.36 Aligned_cols=171 Identities=14% Similarity=0.123 Sum_probs=108.7
Q ss_pred CHHHHHHHHHHHHHCCCeEEEEecchHH-H------HHHHHHHHHHHHhcCCCCCCceEeeccCCChhhHHHHhhC--Cc
Q 008063 364 ELESLLSMTMASDKSGLQVAIHAIGDRA-N------DLVLDMYKSVVVTTGKRDQRFRIEHAQHLASGTAARFGDQ--GI 434 (579)
Q Consensus 364 ~~~~l~~~~~~a~~~g~~i~iH~~g~~~-~------~~~~~~~~~~~~~~~~~~~~~~i~H~~~~~~~~~~~~~~~--~i 434 (579)
+.+.+.++++.+.+.|+++.+|+....- . .........+...+ .+.+.++.|.. +.+.++.+++. ++
T Consensus 111 d~~~l~~~~e~~~~~g~~V~vHaE~~~l~~~~~~~e~~~~~~~~~lA~~~--p~~~v~i~Hvs--t~~~~~~i~~ak~~v 186 (335)
T cd01294 111 DLEKIYPVLEAMQKLGMPLLVHGEVPDFKIDVLDREAKFIPVLEPLAQRF--PKLKIVLEHIT--TADAVEYVKSCNENV 186 (335)
T ss_pred CHHHHHHHHHHHHHcCCeEEEecCCCcccccchhhHHHHHHHHHHHHHHc--CCCeEEEeccc--HHHHHHHHHhCCCCc
Confidence 4578999999999999999999963321 0 01111122222222 25688899985 45555555443 69
Q ss_pred EEEecccccccchhHHH--------HhhChhhhhhhhhhHHHHHHCCCee-eecCCCCCCCCC---------HHHHHHHH
Q 008063 435 VASMQPQHLLDDADSAR--------KKLGVDRAERESYLFQSLLANNALL-ALGSDWPVADIN---------PLCAIRTA 496 (579)
Q Consensus 435 ~~~~~p~~~~~~~~~~~--------~~l~~~~~~~~~~~l~~l~~~Gi~v-~~gsD~~~~~~~---------~~~~~~~~ 496 (579)
++.+||++...+.+.+. +..+|.|.++....+.+.+..|... .++||.+..... ....+...
T Consensus 187 t~Et~ph~L~l~~~~~~~~~~g~~~k~~PPlR~~~d~~~L~~~l~~G~id~~i~SDHaP~~~~~K~~~~g~~Gi~~~~~~ 266 (335)
T cd01294 187 AATITPHHLLLTRDDLLGGGLNPHLYCKPVAKRPEDREALRKAATSGHPKFFLGSDSAPHPKSNKESSCGCAGIFSAPIA 266 (335)
T ss_pred EEEEchhHheeeHHHhcCCCCCCCeEEcCCCCCHHHHHHHHHHHHcCCCCeEEECCCCCCCCccccCCCCCccccCHHHH
Confidence 99999999887665542 2345556556677788888899988 599997543211 11111101
Q ss_pred HcccCCCCCCCCCCCCCCCHHHHHHHHcHHHHHhcccCCccccccCCC
Q 008063 497 MKRIPPGWDNAWIPSERISLTDALIAHTLSAARACFLENDVGSLSPGK 544 (579)
Q Consensus 497 ~~~~~~~~~~~~~~~~~ls~~~al~~~T~npA~~lgl~~~~G~I~~G~ 544 (579)
+.... .... .++++++++++.+.|||+.+|+..++|+|.+|+
T Consensus 267 l~~~~-----~~~~-~~l~l~~~v~~~s~nPA~i~gl~~~kg~i~~~~ 308 (335)
T cd01294 267 LPYLA-----EVFE-EHNALDKLEAFASDNGPNFYGLPPNKKTITLVK 308 (335)
T ss_pred HHHHH-----HHHh-ccCCHHHHHHHHHhHHHHHhCCCCCCCeEEEEe
Confidence 10000 0012 369999999999999999999976566666554
|
In contrast to the large polyfunctional CAD proteins of higher organisms, this group of DHOases is monofunctional and mainly dimeric. |
| >PF13594 Amidohydro_5: Amidohydrolase; PDB: 4F0R_A 4F0S_A 1NFG_C 2FVM_A 2FVK_A 2FTY_D 1YBQ_B 1POJ_B 1ONW_A 2AQO_B | Back alignment and domain information |
|---|
Probab=99.29 E-value=3.1e-12 Score=97.88 Aligned_cols=44 Identities=45% Similarity=0.797 Sum_probs=34.8
Q ss_pred EEEECCEEEEecChHHHHhhccCCCeEEeCCCCeeeccccccccccc
Q 008063 67 MAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHFI 113 (579)
Q Consensus 67 v~I~~GkI~~Ig~~~~~~~~~~~~~~viD~~g~~V~PG~ID~H~H~~ 113 (579)
|+|+||||++|++..+.+ .++.++||++|++|+|||||+|+|+.
T Consensus 1 V~I~~g~I~~v~~~~~~~---~~~~~viD~~g~~v~PG~ID~H~H~~ 44 (68)
T PF13594_consen 1 VLIEDGKIVAVGPDSELP---ADAAEVIDAKGKYVMPGFIDMHTHLG 44 (68)
T ss_dssp EEEETTEEEEEESSCCTT---STCCEEEEETTCEEEE-EEEEEE-TT
T ss_pred CEEECCEEEEeCCCCCCC---CCCCEEEECCCCEEeCCeEeeeeccc
Confidence 789999999996544433 25668999999999999999999975
|
... |
| >cd01320 ADA Adenosine deaminase (ADA) is a monomeric zinc dependent enzyme which catalyzes the irreversible hydrolytic deamination of both adenosine, as well as desoxyadenosine, to ammonia and inosine or desoxyinosine, respectively | Back alignment and domain information |
|---|
Probab=99.28 E-value=3.9e-10 Score=115.08 Aligned_cols=142 Identities=17% Similarity=0.190 Sum_probs=107.2
Q ss_pred CCHHHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhcCCCCCCceEeeccCC--ChhhHHHHhhCCcEEEecc
Q 008063 363 MELESLLSMTMASDKSGLQVAIHAIGDRANDLVLDMYKSVVVTTGKRDQRFRIEHAQHL--ASGTAARFGDQGIVASMQP 440 (579)
Q Consensus 363 ~~~~~l~~~~~~a~~~g~~i~iH~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~H~~~~--~~~~~~~~~~~~i~~~~~p 440 (579)
.+.+.++.+++.|++.|+++.+|+.+........++++.. + ...+.|+.++ ++++++++++.|+.+++||
T Consensus 170 ~~~~~~~~~~~~A~~~g~~v~~H~~E~~~~~~~~~a~~~~----g----~~~i~H~~~l~~~~~~~~~l~~~gi~v~~~P 241 (325)
T cd01320 170 FPPEKFVRAFQRAREAGLRLTAHAGEAGGPESVRDALDLL----G----AERIGHGIRAIEDPELVKRLAERNIPLEVCP 241 (325)
T ss_pred CCHHHHHHHHHHHHHCCCceEEeCCCCCCHHHHHHHHHHc----C----CcccchhhccCccHHHHHHHHHcCCeEEECC
Confidence 3678999999999999999999998654444444433322 2 2368999999 4668999999999999999
Q ss_pred cccccchhHHHHhhChhhhhhhhhhHHHHHHCCCeeeecCCCCCCC-CCHHHHHHHHHcccCCCCCCCCCCCCCCCHHHH
Q 008063 441 QHLLDDADSARKKLGVDRAERESYLFQSLLANNALLALGSDWPVAD-INPLCAIRTAMKRIPPGWDNAWIPSERISLTDA 519 (579)
Q Consensus 441 ~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~a 519 (579)
.++... +.... ....|++.++++|+++++|||.+... .+++.+++.++.. .++++++
T Consensus 242 ~sn~~l--------~~~~~-~~~~p~~~l~~~Gv~v~lgTD~~~~~~~~~~~e~~~~~~~------------~~l~~~e- 299 (325)
T cd01320 242 TSNVQT--------GAVKS-LAEHPLRELLDAGVKVTINTDDPTVFGTYLTDEYELLAEA------------FGLTEEE- 299 (325)
T ss_pred Cccccc--------cccCC-cccChHHHHHHCCCEEEECCCCCcccCCCHHHHHHHHHHH------------cCCCHHH-
Confidence 988632 21111 23568999999999999999986543 5677777777653 3589999
Q ss_pred HHHHcHHHHHhcccC
Q 008063 520 LIAHTLSAARACFLE 534 (579)
Q Consensus 520 l~~~T~npA~~lgl~ 534 (579)
|..+|.|++++..+.
T Consensus 300 l~~~~~na~~~~f~~ 314 (325)
T cd01320 300 LKKLARNAVEASFLS 314 (325)
T ss_pred HHHHHHHHHHHhCCC
Confidence 555789999988765
|
ADA plays an important role in the purine pathway. Low, as well as high levels of ADA activity have been linked to several diseases. |
| >TIGR01430 aden_deam adenosine deaminase | Back alignment and domain information |
|---|
Probab=99.19 E-value=2.3e-09 Score=109.28 Aligned_cols=143 Identities=16% Similarity=0.139 Sum_probs=107.8
Q ss_pred CCHHHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhcCCCCCCceEeeccCC--ChhhHHHHhhCCcEEEecc
Q 008063 363 MELESLLSMTMASDKSGLQVAIHAIGDRANDLVLDMYKSVVVTTGKRDQRFRIEHAQHL--ASGTAARFGDQGIVASMQP 440 (579)
Q Consensus 363 ~~~~~l~~~~~~a~~~g~~i~iH~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~H~~~~--~~~~~~~~~~~~i~~~~~p 440 (579)
.+.+.+.++++.|++.|+++++|+.+.........+.. ..| ...+.|+.++ ++++++++++.|+.+++||
T Consensus 169 ~~~~~~~~~~~~A~~~g~~i~~Ha~E~~~~~~~~~~~~----~~g----~~ri~Hg~~l~~~~~~i~~l~~~gi~v~~cP 240 (324)
T TIGR01430 169 GPPPDFVRAFAIARELGLHLTVHAGELGGPESVREALD----DLG----ATRIGHGVRALEDPELLKRLAQENITLEVCP 240 (324)
T ss_pred CCHHHHHHHHHHHHHCCCCeEEecCCCCChHHHHHHHH----HcC----chhcchhhhhccCHHHHHHHHHcCceEEECC
Confidence 45788999999999999999999985422222222221 223 2468999998 6679999999999999999
Q ss_pred cccccchhHHHHhhChhhhhhhhhhHHHHHHCCCeeeecCCCCCCC-CCHHHHHHHHHcccCCCCCCCCCCCCCCCHHHH
Q 008063 441 QHLLDDADSARKKLGVDRAERESYLFQSLLANNALLALGSDWPVAD-INPLCAIRTAMKRIPPGWDNAWIPSERISLTDA 519 (579)
Q Consensus 441 ~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~a 519 (579)
.++...+. . .. ....|++.++++|+++++|||.+... .++..+++.++.. .++++++
T Consensus 241 ~Sn~~l~~-----~-~~---~~~~pi~~l~~~Gv~v~igTD~~~~~~~~l~~e~~~a~~~------------~~l~~~e- 298 (324)
T TIGR01430 241 TSNVALGV-----V-KS---LAEHPLRRFLEAGVKVTLNSDDPAYFGSYLTEEYEIAAKH------------AGLTEEE- 298 (324)
T ss_pred cccccccc-----c-CC---cccChHHHHHHCCCEEEECCCCCcccCCCHHHHHHHHHHH------------cCCCHHH-
Confidence 99873220 0 00 23568999999999999999976443 4788888888753 3599999
Q ss_pred HHHHcHHHHHhcccCC
Q 008063 520 LIAHTLSAARACFLEN 535 (579)
Q Consensus 520 l~~~T~npA~~lgl~~ 535 (579)
|..+|.|+++...+++
T Consensus 299 l~~~~~na~~~~f~~~ 314 (324)
T TIGR01430 299 LKQLARNALEGSFLSD 314 (324)
T ss_pred HHHHHHHHHHHhCCCH
Confidence 8899999999988753
|
This family includes the experimentally verified adenosine deaminases of mammals and E. coli. Other members of this family are predicted also to be adenosine deaminase, an enzyme of nucleotide degradation. This family is distantly related to AMP deaminase. |
| >PRK05451 dihydroorotase; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=4.2e-09 Score=107.85 Aligned_cols=170 Identities=12% Similarity=0.150 Sum_probs=111.8
Q ss_pred CHHHHHHHHHHHHHCCCeEEEEecchHH--------HHHHHHHHHHHHHhcCCCCCCceEeeccCCChhhHHHHh--hCC
Q 008063 364 ELESLLSMTMASDKSGLQVAIHAIGDRA--------NDLVLDMYKSVVVTTGKRDQRFRIEHAQHLASGTAARFG--DQG 433 (579)
Q Consensus 364 ~~~~l~~~~~~a~~~g~~i~iH~~g~~~--------~~~~~~~~~~~~~~~~~~~~~~~i~H~~~~~~~~~~~~~--~~~ 433 (579)
+++.+.++++.+.+.|+++.+|+..... .....+.+..+.... .+.+.++.|+.. .+.++.++ ..+
T Consensus 116 dd~~l~~~~e~~~~~g~~V~vHaE~~~~~~~~~~~e~~~~~~~l~~lA~~~--pg~~lhI~Hlst--~~~~e~i~~a~~~ 191 (345)
T PRK05451 116 DIEKIYPVLEAMQKLGMPLLVHGEVTDPDIDIFDREAVFIDRVLEPLRRRF--PKLKIVFEHITT--KDAVDYVREANDN 191 (345)
T ss_pred CHHHHHHHHHHHHHcCCEEEEecCCCCcccccccchHHHHHHHHHHHHHhc--CCCcEEEEecCc--HHHHHHHHhcCCC
Confidence 5778999999999999999999863111 111111122222232 256889999853 44444443 347
Q ss_pred cEEEecccccccchhHHH--------HhhChhhhhhhhhhHHHHHHCCCee-eecCCCCCCC---------CCHHHHHHH
Q 008063 434 IVASMQPQHLLDDADSAR--------KKLGVDRAERESYLFQSLLANNALL-ALGSDWPVAD---------INPLCAIRT 495 (579)
Q Consensus 434 i~~~~~p~~~~~~~~~~~--------~~l~~~~~~~~~~~l~~l~~~Gi~v-~~gsD~~~~~---------~~~~~~~~~ 495 (579)
+++.+||++...+.+.+. +..+|.|.++....+.+.+..|... .++||.+... ...++....
T Consensus 192 it~Et~ph~L~l~~~~~~~~~~~~~~k~~PPLR~~~d~~aLw~~l~~G~Id~~i~SDHaP~~~~~K~~~~G~~gi~~~~~ 271 (345)
T PRK05451 192 LAATITPHHLLINRNDMLVGGIRPHLYCLPILKRETHRQALREAATSGNPKFFLGTDSAPHARHAKESACGCAGIFSAPA 271 (345)
T ss_pred EEEEecHHHHhcCHHHHhCCCcCCCeEEeCCCCCHHHHHHHHHHHHcCCCCEEEeCCCCCCChHHhCCCCCCCchhhHHH
Confidence 889999999887665542 2345677667778888999999999 7999976442 111222111
Q ss_pred HHcccCCCCCCCCCCCCCCCHHHHHHHHcHHHHHhcccCCccccccCC
Q 008063 496 AMKRIPPGWDNAWIPSERISLTDALIAHTLSAARACFLENDVGSLSPG 543 (579)
Q Consensus 496 ~~~~~~~~~~~~~~~~~~ls~~~al~~~T~npA~~lgl~~~~G~I~~G 543 (579)
++.... ..+ ... .++++++++.+.|||+.+|+..++|+|.+|
T Consensus 272 g~~~~~----~~~-~~~-~~l~~~v~~~s~nPAkifGl~~~KG~i~~~ 313 (345)
T PRK05451 272 ALELYA----EVF-EEA-GALDKLEAFASLNGPDFYGLPRNTDTITLV 313 (345)
T ss_pred HHHHHH----HHH-HcC-CCHHHHHHHHhHHHHHHhCCCCCCCeEEEE
Confidence 111000 001 122 399999999999999999998889999888
|
|
| >TIGR00856 pyrC_dimer dihydroorotase, homodimeric type | Back alignment and domain information |
|---|
Probab=99.15 E-value=4.9e-09 Score=106.79 Aligned_cols=175 Identities=13% Similarity=0.133 Sum_probs=110.7
Q ss_pred CHHHHHHHHHHHHHCCCeEEEEecch-HHH-------HHHHHHHHHHHHhcCCCCCCceEeeccCCChhhHHHHh--hCC
Q 008063 364 ELESLLSMTMASDKSGLQVAIHAIGD-RAN-------DLVLDMYKSVVVTTGKRDQRFRIEHAQHLASGTAARFG--DQG 433 (579)
Q Consensus 364 ~~~~l~~~~~~a~~~g~~i~iH~~g~-~~~-------~~~~~~~~~~~~~~~~~~~~~~i~H~~~~~~~~~~~~~--~~~ 433 (579)
+.+.+.++++.+++.|+++.+|+... ..+ ......+..+.... .+.+.++.|... .+.++.++ +..
T Consensus 113 dd~~l~~~~e~~~e~g~~v~vHaEd~~~~i~~~~~e~~a~~~~i~~lA~~~--~~~~~~i~H~st--~~~~~~i~~a~~~ 188 (341)
T TIGR00856 113 DIDAIMPVLEAMEKIGLPLLLHGEVTHGDIDIFDREARFIESVLEPLRQRF--PALKVVLEHITT--KDAIDYVEDGNNR 188 (341)
T ss_pred CHHHHHHHHHHHHHcCCeEEEeecCCCCCcccccchhhhhHHHHHHHHHHc--cCCeEEEEecCc--HHHHHHHHHcCCC
Confidence 45789999999999999999999643 111 11111222211222 245788888755 33333333 234
Q ss_pred cEEEecccccccchhHHHH--------hhChhhhhhhhhhHHHHHHCCCee-eecCCCCCCCC---------CHHHHHHH
Q 008063 434 IVASMQPQHLLDDADSARK--------KLGVDRAERESYLFQSLLANNALL-ALGSDWPVADI---------NPLCAIRT 495 (579)
Q Consensus 434 i~~~~~p~~~~~~~~~~~~--------~l~~~~~~~~~~~l~~l~~~Gi~v-~~gsD~~~~~~---------~~~~~~~~ 495 (579)
+++.+||++...+.+.+.. ..+|.|..+....+.+.+..|... .++||.+..+. .....+..
T Consensus 189 vt~E~~ph~L~l~~~~~~~~~~~~~~k~~PPlR~~~d~~aL~~~l~~G~id~~i~SDHaP~~~~~K~~~~~~~G~~g~e~ 268 (341)
T TIGR00856 189 LAATITPQHLMFTRNDLLGGGVNPHLYCLPILKRNIHQQALLELAASGFPKFFLGTDSAPHARHRKESSCGCAGCFSAPT 268 (341)
T ss_pred EEEEEcHHHHhccHHHHhccCCCCceEEeCCCCCHHHHHHHHHHHHcCCCCEEEeCCCCCCChhHcCCCCCCCCcccHHH
Confidence 8899999998876665432 345666656677788889999998 69999764421 11111111
Q ss_pred HHcccCCCCCCCCCCCCCCCHHHHHHHHcHHHHHhcccCCccccccCCCcccEEEeCCCCCC
Q 008063 496 AMKRIPPGWDNAWIPSERISLTDALIAHTLSAARACFLENDVGSLSPGKIADFVILSTSSWE 557 (579)
Q Consensus 496 ~~~~~~~~~~~~~~~~~~ls~~~al~~~T~npA~~lgl~~~~G~I~~G~~ADlvvld~~~~~ 557 (579)
.+.... ..+ . .++++++++++.+.|||+.+|+.. | .|||+|++ ..|.
T Consensus 269 ~l~~~~----~~~-~-~~~~l~~~v~~~s~nPAk~~gl~~--~------dAdi~~~~-~~~~ 315 (341)
T TIGR00856 269 ALPSYA----EVF-E-EMNALENLEAFCSDNGPQFYGLPV--N------STKIELVK-KEQQ 315 (341)
T ss_pred HHHHHH----HHH-h-cCCCHHHHHHHHhHhHHHHhCCCC--C------CceEEEEe-ccEE
Confidence 111100 011 2 268999999999999999999942 4 89999995 4443
|
This homodimeric form of dihydroorotase is less common in microbial genomes than a related dihydroorotase that appears in a complex with aspartyltranscarbamoylase or as a homologous domain in multifunctional proteins of pyrimidine biosynthesis in higher eukaryotes. |
| >PRK09358 adenosine deaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=3.7e-09 Score=108.48 Aligned_cols=142 Identities=16% Similarity=0.171 Sum_probs=104.0
Q ss_pred CCHHHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhcCCCCCCceEeeccCCC--hhhHHHHhhCCcEEEecc
Q 008063 363 MELESLLSMTMASDKSGLQVAIHAIGDRANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLA--SGTAARFGDQGIVASMQP 440 (579)
Q Consensus 363 ~~~~~l~~~~~~a~~~g~~i~iH~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~H~~~~~--~~~~~~~~~~~i~~~~~p 440 (579)
.+++.++++++.|++.|+++++|+.+........++++. .| ...+.|+..+. +++++++++.|+.+++||
T Consensus 179 ~~~~~~~~~~~~A~~~g~~~~~H~~E~~~~~~~~~al~~----lg----~~ri~Hg~~l~~~~~~~~~l~~~gi~v~~cP 250 (340)
T PRK09358 179 FPPSKFARAFDRARDAGLRLTAHAGEAGGPESIWEALDE----LG----AERIGHGVRAIEDPALMARLADRRIPLEVCP 250 (340)
T ss_pred CCHHHHHHHHHHHHHCCCCeEEcCCCCCchhHHHHHHHH----cC----CcccchhhhhccCHHHHHHHHHcCCeEEECC
Confidence 467889999999999999999999743222222222221 22 23689999985 567999999999999999
Q ss_pred cccccchhHHHHhhChhhhhhhhhhHHHHHHCCCeeeecCCCCCC-CCCHHHHHHHHHcccCCCCCCCCCCCCCCCHHHH
Q 008063 441 QHLLDDADSARKKLGVDRAERESYLFQSLLANNALLALGSDWPVA-DINPLCAIRTAMKRIPPGWDNAWIPSERISLTDA 519 (579)
Q Consensus 441 ~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~a 519 (579)
.++...+ .... -...|++.++++|+++++|||.+.. ..+++.+++.+... .+++++++
T Consensus 251 ~Sn~~l~--------~~~~-~~~~pi~~l~~~Gv~v~lgTD~~~~~~~~l~~e~~~~~~~------------~~l~~~el 309 (340)
T PRK09358 251 TSNVQTG--------AVPS-LAEHPLKTLLDAGVRVTINTDDPLVFGTTLTEEYEALAEA------------FGLSDEDL 309 (340)
T ss_pred Ccccccc--------ccCC-cccChHHHHHHCCCEEEECCCCCcccCCCHHHHHHHHHHH------------hCCCHHHH
Confidence 9986322 1000 1346899999999999999998743 46888888877653 35999995
Q ss_pred HHHHcHHHHHhcccC
Q 008063 520 LIAHTLSAARACFLE 534 (579)
Q Consensus 520 l~~~T~npA~~lgl~ 534 (579)
..++.|+.++-.++
T Consensus 310 -~~l~~nai~~sf~~ 323 (340)
T PRK09358 310 -AQLARNALEAAFLS 323 (340)
T ss_pred -HHHHHHHHHHHCCC
Confidence 55568988876664
|
|
| >PLN02599 dihydroorotase | Back alignment and domain information |
|---|
Probab=99.04 E-value=3.7e-08 Score=100.65 Aligned_cols=169 Identities=14% Similarity=0.168 Sum_probs=103.9
Q ss_pred CHHHHHHHHHHHHHCCCeEEEEecchH--------HHHHHHHHHHHHHHhcCCCCCCceEeeccCCCh-hhHHHHhhCCc
Q 008063 364 ELESLLSMTMASDKSGLQVAIHAIGDR--------ANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLAS-GTAARFGDQGI 434 (579)
Q Consensus 364 ~~~~l~~~~~~a~~~g~~i~iH~~g~~--------~~~~~~~~~~~~~~~~~~~~~~~~i~H~~~~~~-~~~~~~~~~~i 434 (579)
+.+.+.++++.+.+.|+++.+|+.... +...+.+.+...... ..+.+.++.|...-.. +.+++.++.++
T Consensus 134 d~~~l~~~le~~~e~G~~L~vH~E~~~~~~~~~~~E~~~i~r~l~~~la~--~~g~kI~i~HiSt~~~ve~v~~ak~~~v 211 (364)
T PLN02599 134 DLGKCLPVLEEMAEQGMPLLVHGEVTDPSVDIFDREKVFIDTILAPLVQK--LPQLKIVMEHITTMDAVEFVESCGDGNV 211 (364)
T ss_pred CHHHHHHHHHHHHhcCCEEEEecCCCcccccccccHHHHHHHHHHHHHHh--ccCCeEEEEecChHHHHHHHHhccCCCE
Confidence 467899999999999999999997421 111111222212222 2466888999855332 22222232268
Q ss_pred EEEecccccccchhHHH--------HhhChhhhhhhhhhHHHHHHCCCe-eeecCCCCCCCCCH---------HHHHHHH
Q 008063 435 VASMQPQHLLDDADSAR--------KKLGVDRAERESYLFQSLLANNAL-LALGSDWPVADINP---------LCAIRTA 496 (579)
Q Consensus 435 ~~~~~p~~~~~~~~~~~--------~~l~~~~~~~~~~~l~~l~~~Gi~-v~~gsD~~~~~~~~---------~~~~~~~ 496 (579)
.+.+||++...+.+.+. ...++.|..+....+.+.+..|.. ..+|||.+...... .+....+
T Consensus 212 tae~tpHhL~l~~~~~~~~~~~~~~k~~PPlR~~~dr~aL~~al~~G~i~~~i~SDHaPh~~~~K~~~~g~~Gi~~~~~~ 291 (364)
T PLN02599 212 AATVTPQHLLLNRNALFQGGLQPHNYCLPVLKREIHREALVKAATSGSKKFFLGTDSAPHPKRAKEASCGCAGIYSAPVA 291 (364)
T ss_pred EEEecHHHHhcCHHHHhccCCCCCeEEECCCCCHHHHHHHHHHHHcCCCCEEEecCCCCCChHHhcCCCCCCCcccHHHH
Confidence 99999999887665542 234566665777788888999995 89999976432111 1111111
Q ss_pred HcccCCCCCCCCCCCCCCCHHHHHHHHcHHHHHhcccCCccccc
Q 008063 497 MKRIPPGWDNAWIPSERISLTDALIAHTLSAARACFLENDVGSL 540 (579)
Q Consensus 497 ~~~~~~~~~~~~~~~~~ls~~~al~~~T~npA~~lgl~~~~G~I 540 (579)
+.... ....+.+ ++++++++++.|||+++|++.++|+|
T Consensus 292 l~~l~-----~~~~~~g-~l~~l~~~~S~npA~~~gL~~~kg~i 329 (364)
T PLN02599 292 LSLYA-----KAFEEAG-ALDKLEAFTSFNGPDFYGLPRNTSTI 329 (364)
T ss_pred HHHHH-----HHHHhcC-CHHHHHHHHhHHHHHHhCCCCCCCeE
Confidence 11000 0001234 89999999999999999996456663
|
|
| >cd00443 ADA_AMPD Adenosine/AMP deaminase | Back alignment and domain information |
|---|
Probab=98.60 E-value=5.5e-06 Score=83.42 Aligned_cols=140 Identities=15% Similarity=0.096 Sum_probs=102.6
Q ss_pred CHHHHHHHHHHHHHCC-CeEEEEecchHHHHHHHHHHHHHHHhcCCCCCCceEeeccCCCh--hhHHHHhhCCcEEEecc
Q 008063 364 ELESLLSMTMASDKSG-LQVAIHAIGDRANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLAS--GTAARFGDQGIVASMQP 440 (579)
Q Consensus 364 ~~~~l~~~~~~a~~~g-~~i~iH~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~H~~~~~~--~~~~~~~~~~i~~~~~p 440 (579)
+...+...++.|++.| +++.+|+.+......+.+++... ...+.|+..+.+ +.++++++.++.+.+||
T Consensus 151 ~~~~f~~~~~~ar~~g~l~~t~HaGE~~~~~~v~~~~~~~---------~~RIgHg~~~~~~p~~~~~l~~~~i~ie~CP 221 (305)
T cd00443 151 PLRDFYSYYEYARRLGLLGLTLHCGETGNREELLQALLLL---------PDRIGHGIFLLKHPELIYLVKLRNIPIEVCP 221 (305)
T ss_pred CHHHHHHHHHHHHHcCCcceEEeecCCCChHHHHHHHHhc---------cceeeceEecCCCHHHHHHHHHcCCEEEECc
Confidence 4677889999999999 99999997543333333333211 558999998877 99999999999999999
Q ss_pred cccccchhHHHHhhChhhhhhhhhhHHHHHHCCCeeeecCCCCCC-CCCHHHHHHHHHcccCCCCCCCCCCCCCCCHHHH
Q 008063 441 QHLLDDADSARKKLGVDRAERESYLFQSLLANNALLALGSDWPVA-DINPLCAIRTAMKRIPPGWDNAWIPSERISLTDA 519 (579)
Q Consensus 441 ~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~a 519 (579)
.+|...+ .... -...|++.++++|++++++||.+.. ..+...+++.+... .+++.++.
T Consensus 222 ~SN~~~~--------~~~~-~~~hP~~~~~~~G~~v~i~TDd~~~~~~~l~~E~~~~~~~------------~~l~~~~l 280 (305)
T cd00443 222 TSNVVLG--------TVQS-YEKHPFMRFFKAGLPVSLSTDDPGIFGTSLSEEYSLAAKT------------FGLTFEDL 280 (305)
T ss_pred chhhhhc--------CCCC-hhhChHHHHHHCCCeEEEeCCCCcccCCChHHHHHHHHHH------------cCcCHHHH
Confidence 9986322 1111 2245799999999999999998754 35777777766542 34899997
Q ss_pred HHHHcHHHHHhcccC
Q 008063 520 LIAHTLSAARACFLE 534 (579)
Q Consensus 520 l~~~T~npA~~lgl~ 534 (579)
.+++ .|+-++-.++
T Consensus 281 ~~l~-~nsi~~sf~~ 294 (305)
T cd00443 281 CELN-RNSVLSSFAK 294 (305)
T ss_pred HHHH-HHHHHHhcCC
Confidence 7766 5776665553
|
Adenosine deaminases (ADAs) are present in pro- and eukaryotic organisms and catalyze the zinc dependent irreversible deamination of adenosine nucleosides to inosine nucleosides and ammonia. The eukaryotic AMP deaminase catalyzes a similar reaction leading to the hydrolytic removal of an amino group at the 6 position of the adenine nucleotide ring, a branch point in the adenylate catabolic pathway. |
| >TIGR00010 hydrolase, TatD family | Back alignment and domain information |
|---|
Probab=98.51 E-value=1.2e-05 Score=78.91 Aligned_cols=134 Identities=18% Similarity=0.125 Sum_probs=86.7
Q ss_pred HHHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhcCCCCCCceEeeccCCChhhHHHHhhCCcEEEecccccc
Q 008063 365 LESLLSMTMASDKSGLQVAIHAIGDRANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLASGTAARFGDQGIVASMQPQHLL 444 (579)
Q Consensus 365 ~~~l~~~~~~a~~~g~~i~iH~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~H~~~~~~~~~~~~~~~~i~~~~~p~~~~ 444 (579)
.+.+.+.++.|++.|+++.+|+.+.. ...++.+++ .+ .....+.|+...+.+.+..+.+.|+.+++......
T Consensus 107 ~~~~~~~~~~a~~~~~pv~iH~~~~~--~~~~~~l~~----~~--~~~~~i~H~~~~~~~~~~~~~~~g~~~~~~~~~~~ 178 (252)
T TIGR00010 107 EEVFRAQLQLAEELNLPVIIHARDAE--EDVLDILRE----EK--PKVGGVLHCFTGDAELAKKLLDLGFYISISGIVTF 178 (252)
T ss_pred HHHHHHHHHHHHHhCCCeEEEecCcc--HHHHHHHHh----cC--CCCCEEEEccCCCHHHHHHHHHCCCeEeeceeEec
Confidence 36788889999999999999996432 333444433 22 23567789887777888888888999988865432
Q ss_pred cchhHHHHhhChhhhhhhhhhHHHHHHCC--CeeeecCCCCCCCC-------C---HHHHHHHHHcccCCCCCCCCCCCC
Q 008063 445 DDADSARKKLGVDRAERESYLFQSLLANN--ALLALGSDWPVADI-------N---PLCAIRTAMKRIPPGWDNAWIPSE 512 (579)
Q Consensus 445 ~~~~~~~~~l~~~~~~~~~~~l~~l~~~G--i~v~~gsD~~~~~~-------~---~~~~~~~~~~~~~~~~~~~~~~~~ 512 (579)
... ..++.+.+.. =++.++||.+...+ + ....+...+. ...
T Consensus 179 ~~~----------------~~~~~~i~~~~~dril~~TD~p~~~~~~~~~~~~~p~~i~~~~~~~a-----------~~~ 231 (252)
T TIGR00010 179 KNA----------------KSLREVVRKIPLERLLVETDSPYLAPVPYRGKRNEPAFVRYTVEAIA-----------EIK 231 (252)
T ss_pred CCc----------------HHHHHHHHhCCHHHeEecccCCCCCCCCCCCCCCCChhHHHHHHHHH-----------HHh
Confidence 111 1233444433 26999999875321 1 1111111111 123
Q ss_pred CCCHHHHHHHHcHHHHHhccc
Q 008063 513 RISLTDALIAHTLSAARACFL 533 (579)
Q Consensus 513 ~ls~~~al~~~T~npA~~lgl 533 (579)
|++++++.++++.||++++++
T Consensus 232 g~~~~~~~~~~~~N~~~~~~~ 252 (252)
T TIGR00010 232 GMDVEELAQITTKNAKRLFGL 252 (252)
T ss_pred CcCHHHHHHHHHHHHHHHhCc
Confidence 699999999999999999975
|
Several genomes have multiple paralogs related to this family. However, a set of 17 proteins can be found, one each from 17 of the first 20 genomes, such that each member forms a bidirectional best hit across genomes with all other members of the set. This core set (and one other near-perfect member), but not the other paralogs, form the seed for this model. Additionally, members of the seed alignment and all trusted hits, but not all paralogs, have a conserved motif DxHxH near the amino end. The member from E. coli was recently shown to have DNase activity. |
| >cd01310 TatD_DNAse TatD like proteins; E | Back alignment and domain information |
|---|
Probab=98.50 E-value=2e-05 Score=77.16 Aligned_cols=133 Identities=19% Similarity=0.168 Sum_probs=86.4
Q ss_pred HHHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhcCCCCCCceEeeccCCChhhHHHHhhCCcEEEecccccc
Q 008063 365 LESLLSMTMASDKSGLQVAIHAIGDRANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLASGTAARFGDQGIVASMQPQHLL 444 (579)
Q Consensus 365 ~~~l~~~~~~a~~~g~~i~iH~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~H~~~~~~~~~~~~~~~~i~~~~~p~~~~ 444 (579)
.+.++..++.|.+.++++.+|+... ...+++.++ .++ .....+.|+...+.+.++++.+.|+.+++.+....
T Consensus 107 ~~~~~~~~~~a~e~~~pv~iH~~~~--~~~~~~l~~----~~~--~~~~~i~H~~~~~~~~~~~~~~~g~~~~~~~~~~~ 178 (251)
T cd01310 107 KEVFRAQLELAKELNLPVVIHSRDA--HEDVLEILK----EYG--PPKRGVFHCFSGSAEEAKELLDLGFYISISGIVTF 178 (251)
T ss_pred HHHHHHHHHHHHHhCCCeEEEeeCc--hHHHHHHHH----hcC--CCCCEEEEccCCCHHHHHHHHHcCCEEEeeeeecc
Confidence 4568999999999999999998643 233333333 333 23567778876667788888889999988876432
Q ss_pred cchhHHHHhhChhhhhhhhhhHHHHHHCC--CeeeecCCCCCCCCCH----------HHHHHHHHcccCCCCCCCCCCCC
Q 008063 445 DDADSARKKLGVDRAERESYLFQSLLANN--ALLALGSDWPVADINP----------LCAIRTAMKRIPPGWDNAWIPSE 512 (579)
Q Consensus 445 ~~~~~~~~~l~~~~~~~~~~~l~~l~~~G--i~v~~gsD~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~ 512 (579)
... ..++.+.+.+ -++.++||.|...... +..+...+. ...
T Consensus 179 ~~~----------------~~~~~~~~~~~~dril~~TD~p~~~~~~~~~~~~~~~~~~~~~~~la-----------~~~ 231 (251)
T cd01310 179 KNA----------------NELREVVKEIPLERLLLETDSPYLAPVPFRGKRNEPAYVKHVAEKIA-----------ELK 231 (251)
T ss_pred CCC----------------HHHHHHHHhCChHHEEEcccCCCCCCCCCCCCCCCChhHHHHHHHHH-----------HHH
Confidence 110 0123333333 2699999987653211 111222221 124
Q ss_pred CCCHHHHHHHHcHHHHHhcc
Q 008063 513 RISLTDALIAHTLSAARACF 532 (579)
Q Consensus 513 ~ls~~~al~~~T~npA~~lg 532 (579)
+++.+++.+..+.||+++||
T Consensus 232 gl~~e~~~~~~~~N~~~ll~ 251 (251)
T cd01310 232 GISVEEVAEVTTENAKRLFG 251 (251)
T ss_pred CcCHHHHHHHHHHHHHHHhC
Confidence 69999999999999999986
|
coli TatD is a cytoplasmic protein, shown to have magnesium dependent DNase activity. |
| >PTZ00124 adenosine deaminase; Provisional | Back alignment and domain information |
|---|
Probab=98.48 E-value=1.1e-05 Score=82.59 Aligned_cols=138 Identities=14% Similarity=0.126 Sum_probs=97.5
Q ss_pred HHHHHHHHHHHCCCeEEEEecch---HHHHHHHHHHHHHHHhcCCCCCCceEeeccCC--ChhhHHHHhhCCcEEEeccc
Q 008063 367 SLLSMTMASDKSGLQVAIHAIGD---RANDLVLDMYKSVVVTTGKRDQRFRIEHAQHL--ASGTAARFGDQGIVASMQPQ 441 (579)
Q Consensus 367 ~l~~~~~~a~~~g~~i~iH~~g~---~~~~~~~~~~~~~~~~~~~~~~~~~i~H~~~~--~~~~~~~~~~~~i~~~~~p~ 441 (579)
....+++.|++.|+++.+|+-+. .......+++... + ...|.|+..+ +++.++++++.++.+.+||.
T Consensus 207 ~f~~~f~~Ar~~Gl~~t~HaGE~~~~~~~~~v~~ai~~l----~----~~RIGHG~~~~~d~~l~~~l~~~~I~lEvCPt 278 (362)
T PTZ00124 207 PFKDIFDYVREAGVNLTVHAGEDVTLPNLNTLYSAIQVL----K----VKRIGHGIRVAESQELIDMVKEKDILLEVCPI 278 (362)
T ss_pred HHHHHHHHHHHCCCCEEEEeCCCCCCCcchhHHHHHHHh----C----CCccccccccCCCHHHHHHHHHcCCeEEECCc
Confidence 46788999999999999999742 2222333333222 2 5589999887 57899999999999999999
Q ss_pred ccccchhHHHHhhChhhhhhhhhhHHHHHHCCCeeeecCCCCCC-CCCHHHHHHHHHcccCCCCCCCCCCCCCCCHHHHH
Q 008063 442 HLLDDADSARKKLGVDRAERESYLFQSLLANNALLALGSDWPVA-DINPLCAIRTAMKRIPPGWDNAWIPSERISLTDAL 520 (579)
Q Consensus 442 ~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al 520 (579)
+|..... -.. -...|++.++++|++++++||.+.. ..++..++..+.. ..|++.++..
T Consensus 279 SN~~~~~--------v~~-~~~HPi~~l~~~Gv~v~InTDDp~~~~t~l~~Ey~~~~~------------~~gls~~~l~ 337 (362)
T PTZ00124 279 SNVLLNN--------AKS-MDTHPIRKLYDAGVKVSVNSDDPGMFLTNINDDYEELYT------------HLNFTLADFM 337 (362)
T ss_pred chhhhhc--------CCc-hhhHHHHHHHHCCCcEEEeCCCccccCCChhHHHHHHHH------------HcCCCHHHHH
Confidence 9973221 111 2346899999999999999997744 3455566554443 3469999988
Q ss_pred HHHcHHHHHhcccC
Q 008063 521 IAHTLSAARACFLE 534 (579)
Q Consensus 521 ~~~T~npA~~lgl~ 534 (579)
+++ .|+.+.-.++
T Consensus 338 ~l~-~nai~asF~~ 350 (362)
T PTZ00124 338 KMN-EWALEKSFLD 350 (362)
T ss_pred HHH-HHHHHHhcCC
Confidence 775 5776665544
|
|
| >PRK10812 putative DNAse; Provisional | Back alignment and domain information |
|---|
Probab=98.33 E-value=4.4e-05 Score=74.98 Aligned_cols=137 Identities=18% Similarity=0.121 Sum_probs=91.0
Q ss_pred HHHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhcCCCCCCceEeeccCCChhhHHHHhhCCcEEEecccccc
Q 008063 365 LESLLSMTMASDKSGLQVAIHAIGDRANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLASGTAARFGDQGIVASMQPQHLL 444 (579)
Q Consensus 365 ~~~l~~~~~~a~~~g~~i~iH~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~H~~~~~~~~~~~~~~~~i~~~~~p~~~~ 444 (579)
.+.+++.+++|++.++|+.+|+.... ...++.+++. +... .-.+.|+...+.+.++++.+.|..+++......
T Consensus 110 ~~vf~~ql~lA~e~~~Pv~iH~r~a~--~~~l~iL~~~----~~~~-~~~v~H~fsG~~~~a~~~~~~G~~is~~g~~t~ 182 (265)
T PRK10812 110 QESFRHHIQIGRELNKPVIVHTRDAR--ADTLAILREE----KVTD-CGGVLHCFTEDRETAGKLLDLGFYISFSGIVTF 182 (265)
T ss_pred HHHHHHHHHHHHHhCCCeEEEeeCch--HHHHHHHHhh----cCCC-CCEEEEeecCCHHHHHHHHHCCCEEEECeeeec
Confidence 35678889999999999999996432 3455544432 1111 235789999899999999999998888754322
Q ss_pred cchhHHHHhhChhhhhhhhhhHHHHHHCC--CeeeecCCCCCCCCCH-------HHHHH---HHHcccCCCCCCCCCCCC
Q 008063 445 DDADSARKKLGVDRAERESYLFQSLLANN--ALLALGSDWPVADINP-------LCAIR---TAMKRIPPGWDNAWIPSE 512 (579)
Q Consensus 445 ~~~~~~~~~l~~~~~~~~~~~l~~l~~~G--i~v~~gsD~~~~~~~~-------~~~~~---~~~~~~~~~~~~~~~~~~ 512 (579)
+....++.+.+.. =++.+.||+|...+.+ ...+. ..+. .-.
T Consensus 183 ----------------~~~~~~~~~~~~ipldrlLlETD~P~~~p~~~~g~~n~P~~i~~v~~~ia-----------~l~ 235 (265)
T PRK10812 183 ----------------RNAEQLRDAARYVPLDRLLVETDSPYLAPVPHRGKENQPAMVRDVAEYMA-----------VLK 235 (265)
T ss_pred ----------------CccHHHHHHHHhCChhhEEEecCCCCCCCcCCCCCCCCcHHHHHHHHHHH-----------HHh
Confidence 1111344555544 2689999988653211 11121 1222 124
Q ss_pred CCCHHHHHHHHcHHHHHhcccCC
Q 008063 513 RISLTDALIAHTLSAARACFLEN 535 (579)
Q Consensus 513 ~ls~~~al~~~T~npA~~lgl~~ 535 (579)
+++.+++.+..+.|+.++++++.
T Consensus 236 g~~~eei~~~~~~N~~~lf~~~~ 258 (265)
T PRK10812 236 GVSVEELAQVTTDNFARLFHIDA 258 (265)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCh
Confidence 69999999999999999999853
|
|
| >cd01321 ADGF Adenosine deaminase-related growth factors (ADGF), a novel family of secreted growth-factors with sequence similarty to adenosine deaminase | Back alignment and domain information |
|---|
Probab=98.27 E-value=0.00011 Score=74.91 Aligned_cols=143 Identities=15% Similarity=0.041 Sum_probs=99.0
Q ss_pred CHHHHHHHHHHHHHCC--CeEEEEecchH-----HHHHHHHHHHHHHHhcCCCCCCceEeeccCCC--hhhHHHHhhCCc
Q 008063 364 ELESLLSMTMASDKSG--LQVAIHAIGDR-----ANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLA--SGTAARFGDQGI 434 (579)
Q Consensus 364 ~~~~l~~~~~~a~~~g--~~i~iH~~g~~-----~~~~~~~~~~~~~~~~~~~~~~~~i~H~~~~~--~~~~~~~~~~~i 434 (579)
+.......++.|++.| +++++|+-+.. ....+.+++ . .+ ...|.|+..+. ++.++.+++.+|
T Consensus 177 ~~~~f~~~f~~ar~~g~~l~~t~HAGE~~~~~~~~~~~v~~al-~----lg----~~RIGHG~~~~~dp~ll~~l~~~~I 247 (345)
T cd01321 177 PLLDFLPQLLWFPKQCAEIPFFFHAGETNGDGTETDENLVDAL-L----LN----TKRIGHGFALPKHPLLMDLVKKKNI 247 (345)
T ss_pred CHHHHHHHHHHHHHhCCCCceEeecCCCcCCCCCChhHHHHHH-H----hC----CCcCccccccCcCHHHHHHHHHcCC
Confidence 4677888999999999 99999996432 122333333 1 12 55889998765 789999999999
Q ss_pred EEEecccccccchhHHHHhhChhhhhhhhhhHHHHHHCCCeeeecCCCCCCC-C-CHHHHHHHHHcccCCCCCCCCCCCC
Q 008063 435 VASMQPQHLLDDADSARKKLGVDRAERESYLFQSLLANNALLALGSDWPVAD-I-NPLCAIRTAMKRIPPGWDNAWIPSE 512 (579)
Q Consensus 435 ~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~ 512 (579)
.+.+||.+|...+- .+ . -...|++.++++|++++++||.+... . +.-.+.+.+.... ...
T Consensus 248 ~lEvCPtSN~~~~~-----v~---~-~~~HPl~~ll~~Gv~vtinTDDp~~f~t~~l~~Ey~~~~~~~---------g~~ 309 (345)
T cd01321 248 AIEVCPISNQVLGL-----VS---D-LRNHPAAALLARGVPVVISSDDPGFWGAKGLSHDFYQAFMGL---------APA 309 (345)
T ss_pred eEEECcchhhhhcc-----cc---c-hhhChHHHHHHCCCeEEEeCCCcchhCCCCchHHHHHHHHHh---------ccC
Confidence 99999999973221 11 1 23468999999999999999987442 4 5555555554311 111
Q ss_pred CCCHHHHHHHHcHHHHHhcccC
Q 008063 513 RISLTDALIAHTLSAARACFLE 534 (579)
Q Consensus 513 ~ls~~~al~~~T~npA~~lgl~ 534 (579)
+++.++..+++ .|+.++-.++
T Consensus 310 ~l~~~~l~~l~-~nsi~~sF~~ 330 (345)
T cd01321 310 DAGLRGLKQLA-ENSIRYSALS 330 (345)
T ss_pred CCCHHHHHHHH-HHHHHHHCCC
Confidence 38999966654 6887776654
|
|
| >cd00530 PTE Phosphotriesterase (PTE) catalyzes the hydrolysis of organophosphate nerve agents, including the chemical warfare agents VX, soman, and sarin as well as the insecticide paraoxon | Back alignment and domain information |
|---|
Probab=98.16 E-value=8.7e-05 Score=74.56 Aligned_cols=148 Identities=11% Similarity=0.038 Sum_probs=94.4
Q ss_pred CHHHHHHHHHHHHHCCCeEEEEecch-HHHHHHHHHHHHHHHhcCCCCCCceEeecc-CCChhhHHHHhhCCcEEEeccc
Q 008063 364 ELESLLSMTMASDKSGLQVAIHAIGD-RANDLVLDMYKSVVVTTGKRDQRFRIEHAQ-HLASGTAARFGDQGIVASMQPQ 441 (579)
Q Consensus 364 ~~~~l~~~~~~a~~~g~~i~iH~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~i~H~~-~~~~~~~~~~~~~~i~~~~~p~ 441 (579)
..+.+++.+++|++.|+|+.+|+... ......++.+.+ .+....+..+.||. ..+.+.++++.+.|..+.++..
T Consensus 134 q~~~f~~~~~lA~~~~~Pv~iH~~~~~~~~~~~l~~l~~----~g~~~~~~vi~H~~~~~~~~~~~~~~~~G~~i~~~~~ 209 (293)
T cd00530 134 EEKVLRAAARAQKETGVPISTHTQAGLTMGLEQLRILEE----EGVDPSKVVIGHLDRNDDPDYLLKIAALGAYLEFDGI 209 (293)
T ss_pred HHHHHHHHHHHHHHHCCeEEEcCCCCccccHHHHHHHHH----cCCChhheEEeCCCCCCCHHHHHHHHhCCCEEEeCCC
Confidence 34578899999999999999998642 233444444433 34333456899998 5677889999999988887744
Q ss_pred ccccchhHHHHhhChhhhhhhhhhHHHHHHCCC--eeeecCCCCCCCCC--------HHHHHHHHHcccCCCCCCCCCCC
Q 008063 442 HLLDDADSARKKLGVDRAERESYLFQSLLANNA--LLALGSDWPVADIN--------PLCAIRTAMKRIPPGWDNAWIPS 511 (579)
Q Consensus 442 ~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~~Gi--~v~~gsD~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~ 511 (579)
...... ...+.. +....++.+.+.|. ++.++||++...+. +..-+...... ...
T Consensus 210 ~~~~~~----~~~~~~---~~~~~l~~~~~~~~~d~ill~TD~p~~~~~~~~~~~~~~~~~~~~~~~~---------~~~ 273 (293)
T cd00530 210 GKDKIF----GYPSDE---TRADAVKALIDEGYGDRLLLSHDVFRKSYLEKRYGGHGYDYILTRFIPR---------LRE 273 (293)
T ss_pred Cccccc----CCCCHH---HHHHHHHHHHHCCCcCCEEEeCCcCchhhhhhccCCCChHHHHHHHHHH---------HHH
Confidence 321000 000000 22335678888886 78999998764321 11112222111 134
Q ss_pred CCCCHHHHHHHHcHHHHHhc
Q 008063 512 ERISLTDALIAHTLSAARAC 531 (579)
Q Consensus 512 ~~ls~~~al~~~T~npA~~l 531 (579)
.+++.+++.++.+.||++++
T Consensus 274 ~g~~~e~i~~~~~~N~~~lf 293 (293)
T cd00530 274 RGVTEEQLDTILVENPARFL 293 (293)
T ss_pred cCCCHHHHHHHHHHCHHHhC
Confidence 57999999999999999875
|
PTE exists as a homodimer with one active site per monomer. The active site is located next to a binuclear metal center, at the C-terminal end of a TIM alpha- beta barrel motif. The native enzyme contains two zinc ions at the active site however these can be replaced with other metals such as cobalt, cadmium, nickel or manganese and the enzyme remains active. |
| >PRK11449 putative deoxyribonuclease YjjV; Provisional | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.00032 Score=68.73 Aligned_cols=137 Identities=14% Similarity=0.024 Sum_probs=87.8
Q ss_pred HHHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhcCCCCCCceEeeccCCChhhHHHHhhCCcEEEecccccc
Q 008063 365 LESLLSMTMASDKSGLQVAIHAIGDRANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLASGTAARFGDQGIVASMQPQHLL 444 (579)
Q Consensus 365 ~~~l~~~~~~a~~~g~~i~iH~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~H~~~~~~~~~~~~~~~~i~~~~~p~~~~ 444 (579)
.+.+.+-++.|.+++.|+.+|+.+. .+.+++.+.+ ++. .+..+.|+...+.+.++++.+.|..++..+....
T Consensus 113 ~~vf~~ql~lA~~~~~Pv~iH~r~a--~~~~~~il~~----~~~--~~~~i~H~fsG~~~~a~~~l~~G~~iS~~g~it~ 184 (258)
T PRK11449 113 QWLLDEQLKLAKRYDLPVILHSRRT--HDKLAMHLKR----HDL--PRTGVVHGFSGSLQQAERFVQLGYKIGVGGTITY 184 (258)
T ss_pred HHHHHHHHHHHHHhCCCEEEEecCc--cHHHHHHHHh----cCC--CCCeEEEcCCCCHHHHHHHHHCCCEEEeCccccc
Confidence 3567889999999999999999742 2444444433 221 1246999999999999999999999888766543
Q ss_pred cchhHHHHhhChhhhhhhhhhHHHHHHC-CC-eeeecCCCCCCCCCH-------HHHHHHHHcccCCCCCCCCCCCCCCC
Q 008063 445 DDADSARKKLGVDRAERESYLFQSLLAN-NA-LLALGSDWPVADINP-------LCAIRTAMKRIPPGWDNAWIPSERIS 515 (579)
Q Consensus 445 ~~~~~~~~~l~~~~~~~~~~~l~~l~~~-Gi-~v~~gsD~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~ls 515 (579)
.... .++.+.+. .. ++.+.||+|..++.+ ...+...+... ..-.+++
T Consensus 185 ~~~~----------------~~~~~~~~ipldriL~ETD~P~l~p~~~~~~~n~p~~~~~~~~~i--------a~l~~~~ 240 (258)
T PRK11449 185 PRAS----------------KTRDVIAKLPLASLLLETDAPDMPLNGFQGQPNRPEQAARVFDVL--------CELRPEP 240 (258)
T ss_pred cCcH----------------HHHHHHHhCChhhEEEecCCCCCCCCCCCCCCCCChHHHHHHHHH--------HHHHCcC
Confidence 2111 12233321 22 589999998754321 11111111110 0123589
Q ss_pred HHHHHHHHcHHHHHhccc
Q 008063 516 LTDALIAHTLSAARACFL 533 (579)
Q Consensus 516 ~~~al~~~T~npA~~lgl 533 (579)
++++.+..+.|..+++|+
T Consensus 241 ~~el~~~~~~N~~~lf~~ 258 (258)
T PRK11449 241 ADEIAEVLLNNTYTLFNV 258 (258)
T ss_pred HHHHHHHHHHHHHHHhCc
Confidence 999999999999998874
|
|
| >PF00962 A_deaminase: Adenosine/AMP deaminase immunodeficiency disease (SCID); InterPro: IPR001365 Adenosine deaminase (3 | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.00011 Score=75.14 Aligned_cols=237 Identities=16% Similarity=0.078 Sum_probs=132.3
Q ss_pred CHHHHHHHHHHHHHHHHhcCccEEEeCCc----CCCC--CccccchHHHHHHHHHHhhcCCCeeEEEEccCcc-ch---h
Q 008063 241 SVDERREALLRASNLALSRGVTTVVDFGR----YYPG--ESVQLSWEDFADVYQWASYSEKMKIRVCLFFPLE-TW---S 310 (579)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~Git~v~~~~~----~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~~~-~~---~ 310 (579)
+++..+.......+.+.+.|+.-+--... ...+ .+.........+.++.....-.+.+++.....-. .. .
T Consensus 72 ~~e~~~~~~~~~l~~~~~dnV~YlElr~~P~~~~~~~~~~~~~~~~~~i~~~~~~a~~~~~i~~~li~~~~R~~~~~~~~ 151 (331)
T PF00962_consen 72 TPEDLRRYAYEVLEDFAEDNVVYLELRFSPQFHAQLGGNLSFDEVVEAIIEGIDRAEKEFGIKVRLIISVLRHFPDEWAE 151 (331)
T ss_dssp SHHHHHHHHHHHHHHHHHTTEEEEEEEESHHHHHTTTCSSTHHHHHHHHHHHHHHHHHHHTTEEEEEEEEETTSTHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHcCCeEEEEEeccccccccCCCCCHHHHHHHHHhhhhhccccccccccccccccccchHHHHH
Confidence 66888888888899999999877643211 0011 2222334444444555444444555555433222 11 1
Q ss_pred hHHHHHHhcCCCCCCceEEceEEEEEcCccCCCcccccCCCCCCCCCCcccCCCHHHHHHHHHHHHHCCCeEEEEecchH
Q 008063 311 SLADLINKTGHVLSDWVYLGGVKAFADGSLGSNSALFHEPYADEPHNYGLQVMELESLLSMTMASDKSGLQVAIHAIGDR 390 (579)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~g~k~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~i~iH~~g~~ 390 (579)
+..+...... .. ...|+.+.-+. .. ..+.....+++.+++.|+++.+|+-+..
T Consensus 152 ~~~~~~~~~~---~~--~vvG~dl~g~E------------~~----------~~~~~~~~~~~~a~~~gl~~t~HaGE~~ 204 (331)
T PF00962_consen 152 EIVELASKYP---DK--GVVGFDLAGDE------------DG----------GPPLKFAPAFRKAREAGLKLTVHAGETG 204 (331)
T ss_dssp HHHHHHHHTT---TT--TEEEEEEESST------------TS----------TTGGGHHHHHHHHHHTT-EEEEEESSSS
T ss_pred HHHHHHhhcc---cc--eEEEEEecCCc------------cc----------CchHHHHHHHhhhcccceeecceecccC
Confidence 2222222211 11 23344333111 01 1223377889999999999999997555
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCceEeeccCCC--hhhHHHHhhCCcEEEecccccccchhHHHHhhChhhhhhhhhhHHH
Q 008063 391 ANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLA--SGTAARFGDQGIVASMQPQHLLDDADSARKKLGVDRAERESYLFQS 468 (579)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~i~H~~~~~--~~~~~~~~~~~i~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~l~~ 468 (579)
......+++.. .+ ...|.|+..+. ++.++++++.+|.+.+||.+|... +.-.. -...|++.
T Consensus 205 ~~~~~~~ai~~----l~----~~RIgHG~~~~~~p~l~~~~~~~~I~iEvcptSN~~~--------~~~~~-~~~hP~~~ 267 (331)
T PF00962_consen 205 GPEHIRDAILL----LG----ADRIGHGVRLIKDPELLELLAERQIPIEVCPTSNVQL--------GAVPS-YEEHPLRK 267 (331)
T ss_dssp THHHHHHHHHT----ST-----SEEEE-GGGGGSHHHHHHHHHTT-EEEE-HHHHHHT--------TSSST-GGG-CHHH
T ss_pred Ccccccchhhh----cc----ceeecchhhhhhhhHHHHHHHHhCCCeeeCCCcCccc--------ceeee-cchhHHHH
Confidence 44444444432 12 45999998764 567889999999999999998632 21111 23568999
Q ss_pred HHHCCCeeeecCCCCCC-CCCHHHHHHHHHcccCCCCCCCCCCCCCCCHHHHHHHHcHHHHHhcccC
Q 008063 469 LLANNALLALGSDWPVA-DINPLCAIRTAMKRIPPGWDNAWIPSERISLTDALIAHTLSAARACFLE 534 (579)
Q Consensus 469 l~~~Gi~v~~gsD~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~npA~~lgl~ 534 (579)
++++|++|+++||.+.. ..+.-.+...+... .+++.++..+++ .|+.++-.++
T Consensus 268 ~~~~gv~v~i~TDd~~~~~~~l~~ey~~~~~~------------~~l~~~~l~~l~-~nsi~~sf~~ 321 (331)
T PF00962_consen 268 LLDAGVPVSINTDDPGVFGTTLSDEYYLAAEA------------FGLSLADLKQLA-RNSIEASFLS 321 (331)
T ss_dssp HHHTT-EEEE--BSHHHHT-SHHHHHHHHHHH------------HT--HHHHHHHH-HHHHHCSSS-
T ss_pred HHHcCCceeccCCCccccCCCcHHHHHHHHHH------------cCCCHHHHHHHH-HHHHHHHcCC
Confidence 99999999999997633 34555665555432 258998866665 6888776654
|
5.4.4 from EC) catalyzes the hydrolytic deamination of adenosine into inosine and AMP deaminase (3.5.4.6 from EC) catalyzes the hydrolytic deamination of AMP into IMP. It has been shown [] that these two enzymes share three regions of sequence similarities; these regions are centred on residues which are proposed to play an important role in the catalytic mechanism of these two enzymes.; GO: 0019239 deaminase activity, 0009168 purine ribonucleoside monophosphate biosynthetic process; PDB: 3LGG_B 3LGD_B 2AMX_B 3EWD_A 2QVN_A 2PGF_A 2PGR_A 3EWC_A 1W1I_G 1O5R_A .... |
| >COG1816 Add Adenosine deaminase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.00 E-value=7.7e-05 Score=74.84 Aligned_cols=142 Identities=18% Similarity=0.147 Sum_probs=100.4
Q ss_pred CCHHHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhcCCCCCCceEeeccCC--ChhhHHHHhhCCcEEEecc
Q 008063 363 MELESLLSMTMASDKSGLQVAIHAIGDRANDLVLDMYKSVVVTTGKRDQRFRIEHAQHL--ASGTAARFGDQGIVASMQP 440 (579)
Q Consensus 363 ~~~~~l~~~~~~a~~~g~~i~iH~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~H~~~~--~~~~~~~~~~~~i~~~~~p 440 (579)
..++....+++.+++.|+.+.+||.+....+.+.+++.... ...|.|+... +++...+++..+|.+.+||
T Consensus 182 ~p~~~f~~~f~~~r~~gl~lt~HaGE~~~~~~i~~al~~~~--------~~rI~HGi~~~~d~~L~~~l~~~qI~levCP 253 (345)
T COG1816 182 YPPELFVSLFKLARDNGLKLTIHAGEAGGPESIRDALDLLG--------AERIGHGIRAIEDPELLYRLAERQIPLEVCP 253 (345)
T ss_pred CCHHHHHHHHHHHHHcCceEEEeccccCCcHHHHHHHHHhc--------hhhhccccccccCHHHHHHHHHhCCeeEECC
Confidence 46788999999999999999999984444444444443322 1257777654 5678889999999999999
Q ss_pred cccccchhHHHHhhChhhhhhhhhhHHHHHHCCCeeeecCCCCCCCC-CHHHHHHHHHcccCCCCCCCCCCCCCCCHHHH
Q 008063 441 QHLLDDADSARKKLGVDRAERESYLFQSLLANNALLALGSDWPVADI-NPLCAIRTAMKRIPPGWDNAWIPSERISLTDA 519 (579)
Q Consensus 441 ~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~a 519 (579)
.+|.... .-.. -...|+++++++|++++++||.+.... ....+...+.. ..+++..|+
T Consensus 254 ~SNi~~~--------~v~~-~~~hPf~~~~d~Gv~VsLnTDdp~~f~~~l~~Ey~~aa~------------~~~l~~~dl 312 (345)
T COG1816 254 LSNIQLG--------VVPS-LAKHPFKKLFDAGVKVSLNTDDPLYFGTPLIEEYLVAAQ------------IYGLSREDL 312 (345)
T ss_pred cchhhcc--------cccc-hhhCcHHHHHHcCCceEEcCCChhhcCCchHHHHHHHHH------------HhCCCHHHH
Confidence 9996222 1111 334579999999999999999875543 55556555553 345888886
Q ss_pred HHHHcHHHHHhcccC
Q 008063 520 LIAHTLSAARACFLE 534 (579)
Q Consensus 520 l~~~T~npA~~lgl~ 534 (579)
.+++ .|.=+.-+++
T Consensus 313 ~~~a-rnav~~af~~ 326 (345)
T COG1816 313 CELA-RNAVEAAFIS 326 (345)
T ss_pred HHHH-HHHHHHccCC
Confidence 6554 6776666664
|
|
| >PRK10425 DNase TatD; Provisional | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.0011 Score=64.80 Aligned_cols=138 Identities=11% Similarity=0.029 Sum_probs=86.6
Q ss_pred HHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhcCCCCCCceEeeccCCChhhHHHHhhCCcEEEeccccccc
Q 008063 366 ESLLSMTMASDKSGLQVAIHAIGDRANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLASGTAARFGDQGIVASMQPQHLLD 445 (579)
Q Consensus 366 ~~l~~~~~~a~~~g~~i~iH~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~H~~~~~~~~~~~~~~~~i~~~~~p~~~~~ 445 (579)
+.+++-++.|+++++|+.+|+.+.. +.+++.+++.. ....-.+.|+...+.+.++++.+.|..+++.+.....
T Consensus 108 ~vF~~ql~lA~~~~~Pv~iH~r~a~--~~~l~iL~~~~-----~~~~~~i~H~fsG~~~~~~~~l~~G~~~si~g~i~~~ 180 (258)
T PRK10425 108 RAFVAQLAIAAELNMPVFMHCRDAH--ERFMALLEPWL-----DKLPGAVLHCFTGTREEMQACLARGLYIGITGWVCDE 180 (258)
T ss_pred HHHHHHHHHHHHhCCCeEEEEeCch--HHHHHHHHHhc-----cCCCCeEEEecCCCHHHHHHHHHCCCEEEECceeecc
Confidence 5578889999999999999997432 55555554421 1112367899999999999999999998887654321
Q ss_pred chhHHHHhhChhhhhhhhhhHHHHHH-CCC-eeeecCCCCCCCCCH-----------HHHHHHHHcccCCCCCCCCCCCC
Q 008063 446 DADSARKKLGVDRAERESYLFQSLLA-NNA-LLALGSDWPVADINP-----------LCAIRTAMKRIPPGWDNAWIPSE 512 (579)
Q Consensus 446 ~~~~~~~~l~~~~~~~~~~~l~~l~~-~Gi-~v~~gsD~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~ 512 (579)
. ....++.+.+ -.. ++.+-||+|...+.+ ...+...+... ..-.
T Consensus 181 ~---------------~~~~~~~~~~~ipldrlLlETDaP~l~P~~~~~~~~~~~n~P~~i~~v~~~i--------A~l~ 237 (258)
T PRK10425 181 R---------------RGLELRELLPLIPAERLLLETDAPYLLPRDLTPKPASRRNEPAFLPHILQRI--------AHWR 237 (258)
T ss_pred c---------------ccHHHHHHHHhCChHHEEEeccCCCCCCCCcCCCCCCCCCCcHHHHHHHHHH--------HHHH
Confidence 0 0001122222 111 478899988653211 11111111111 1234
Q ss_pred CCCHHHHHHHHcHHHHHhccc
Q 008063 513 RISLTDALIAHTLSAARACFL 533 (579)
Q Consensus 513 ~ls~~~al~~~T~npA~~lgl 533 (579)
+++.+++.+..+.|.-+++|+
T Consensus 238 ~~~~~~v~~~~~~N~~~lf~~ 258 (258)
T PRK10425 238 GEDAAWLAATTDANARTLFGL 258 (258)
T ss_pred CcCHHHHHHHHHHHHHHHhCc
Confidence 689999999999998888764
|
|
| >COG0084 TatD Mg-dependent DNase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00057 Score=66.16 Aligned_cols=136 Identities=18% Similarity=0.159 Sum_probs=89.9
Q ss_pred HHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhcCCCCCCceEeeccCCChhhHHHHhhCCcEEEeccccccc
Q 008063 366 ESLLSMTMASDKSGLQVAIHAIGDRANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLASGTAARFGDQGIVASMQPQHLLD 445 (579)
Q Consensus 366 ~~l~~~~~~a~~~g~~i~iH~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~H~~~~~~~~~~~~~~~~i~~~~~p~~~~~ 445 (579)
+.+++-+++|++.+.|+.+|+.+. -+.+++.+++... ..-.+.||...+.+.++++.+.|..+++.+.....
T Consensus 112 ~~F~~ql~lA~~~~lPviIH~R~A--~~d~~~iL~~~~~------~~~gi~HcFsGs~e~a~~~~d~G~yisisG~itfk 183 (256)
T COG0084 112 EVFEAQLELAKELNLPVIIHTRDA--HEDTLEILKEEGA------PVGGVLHCFSGSAEEARKLLDLGFYISISGIVTFK 183 (256)
T ss_pred HHHHHHHHHHHHcCCCEEEEcccc--HHHHHHHHHhcCC------CCCEEEEccCCCHHHHHHHHHcCeEEEECceeecC
Confidence 457888999999999999999642 2444444444321 35589999999999999999999988888776653
Q ss_pred chhHHHHhhChhhhhhhhhhHHHHHHC-CC-eeeecCCCCCCCCCHHHH-------HHHHHcccCCCCCCCCCCCCCCCH
Q 008063 446 DADSARKKLGVDRAERESYLFQSLLAN-NA-LLALGSDWPVADINPLCA-------IRTAMKRIPPGWDNAWIPSERISL 516 (579)
Q Consensus 446 ~~~~~~~~l~~~~~~~~~~~l~~l~~~-Gi-~v~~gsD~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~ls~ 516 (579)
.... ++++.+. -. ++.+=||+|...+.++.. +...+... ..-.++++
T Consensus 184 ~a~~----------------~~ev~~~iPldrLL~ETDsPyl~P~p~rGkrNeP~~v~~v~~~i--------Aelk~~~~ 239 (256)
T COG0084 184 NAEK----------------LREVARELPLDRLLLETDAPYLAPVPYRGKRNEPAYVRHVAEKL--------AELKGISA 239 (256)
T ss_pred CcHH----------------HHHHHHhCCHhHeEeccCCCCCCCcCCCCCCCCchHHHHHHHHH--------HHHhCCCH
Confidence 2211 1111111 11 377889998775433221 11111111 12346999
Q ss_pred HHHHHHHcHHHHHhccc
Q 008063 517 TDALIAHTLSAARACFL 533 (579)
Q Consensus 517 ~~al~~~T~npA~~lgl 533 (579)
+++.+..|.|.-+++++
T Consensus 240 eeva~~t~~N~~~lf~~ 256 (256)
T COG0084 240 EEVAEITTENAKRLFGL 256 (256)
T ss_pred HHHHHHHHHHHHHHhcC
Confidence 99999999999888764
|
|
| >PRK09875 putative hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.0011 Score=65.83 Aligned_cols=146 Identities=11% Similarity=0.077 Sum_probs=95.5
Q ss_pred CHHHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhcCCCCCCceEeeccC-CChhhHHHHhhCCcEEEecccc
Q 008063 364 ELESLLSMTMASDKSGLQVAIHAIGDRANDLVLDMYKSVVVTTGKRDQRFRIEHAQH-LASGTAARFGDQGIVASMQPQH 442 (579)
Q Consensus 364 ~~~~l~~~~~~a~~~g~~i~iH~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~H~~~-~~~~~~~~~~~~~i~~~~~p~~ 442 (579)
....+++..+++++.|.++.+|........+.++. ..+.|....+..+.|+.. .+.+...++.+.|+.+..+.-.
T Consensus 137 E~kvl~Aaa~a~~~TG~pi~~Ht~~~~~g~e~l~i----l~e~Gvd~~rvvi~H~d~~~d~~~~~~l~~~G~~l~fD~~g 212 (292)
T PRK09875 137 EEKVFIAAALAHNQTGRPISTHTSFSTMGLEQLAL----LQAHGVDLSRVTVGHCDLKDNLDNILKMIDLGAYVQFDTIG 212 (292)
T ss_pred HHHHHHHHHHHHHHHCCcEEEcCCCccchHHHHHH----HHHcCcCcceEEEeCCCCCCCHHHHHHHHHcCCEEEeccCC
Confidence 34567888888999999999997532222233443 344566677999999964 3557888899999999876221
Q ss_pred cccchhHHHHhhChhhhhhhhhhHHHHHHCC-C-eeeecCCCCCCCC-------CHHHHHHHHHcccCCCCCCCCCCCCC
Q 008063 443 LLDDADSARKKLGVDRAERESYLFQSLLANN-A-LLALGSDWPVADI-------NPLCAIRTAMKRIPPGWDNAWIPSER 513 (579)
Q Consensus 443 ~~~~~~~~~~~l~~~~~~~~~~~l~~l~~~G-i-~v~~gsD~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~ 513 (579)
... .++.+ +....++.+.+.| . ++.+++|....+. ..-..+...+.++ .+.|
T Consensus 213 ~~~-------~~pd~---~r~~~i~~L~~~Gy~drilLS~D~~~~~~~~~~gg~G~~~i~~~~ip~L---------~~~G 273 (292)
T PRK09875 213 KNS-------YYPDE---KRIAMLHALRDRGLLNRVMLSMDITRRSHLKANGGYGYDYLLTTFIPQL---------RQSG 273 (292)
T ss_pred Ccc-------cCCHH---HHHHHHHHHHhcCCCCeEEEeCCCCCcccccccCCCChhHHHHHHHHHH---------HHcC
Confidence 110 01111 3345688899998 3 7999999653321 1123333333332 3457
Q ss_pred CCHHHHHHHHcHHHHHhcc
Q 008063 514 ISLTDALIAHTLSAARACF 532 (579)
Q Consensus 514 ls~~~al~~~T~npA~~lg 532 (579)
++.+++=++.-.||+++|+
T Consensus 274 vse~~I~~m~~~NP~r~~~ 292 (292)
T PRK09875 274 FSQADVDVMLRENPSQFFQ 292 (292)
T ss_pred CCHHHHHHHHHHCHHHHhC
Confidence 9999999999999999874
|
|
| >TIGR01431 adm_rel adenosine deaminase-related growth factor | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.0078 Score=64.05 Aligned_cols=143 Identities=18% Similarity=0.147 Sum_probs=90.6
Q ss_pred HHHHHHHHH-HHHHCCCeEEEEecchH-----HHHHHHHHHHHHHHhcCCCCCCceEeeccCCC--hhhHHHHhhCCcEE
Q 008063 365 LESLLSMTM-ASDKSGLQVAIHAIGDR-----ANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLA--SGTAARFGDQGIVA 436 (579)
Q Consensus 365 ~~~l~~~~~-~a~~~g~~i~iH~~g~~-----~~~~~~~~~~~~~~~~~~~~~~~~i~H~~~~~--~~~~~~~~~~~i~~ 436 (579)
...+...+. .+++.|+++.+|+-+.. ....+.+++ . .+ .-.|.|+..+. ++.++.+++.+|.+
T Consensus 305 l~~f~~~~~~~~~~~gl~~t~HAGE~~~~g~~~d~nl~dAI-l----Lg----~~RIGHG~~l~~~P~l~~~vke~~I~l 375 (479)
T TIGR01431 305 LLDFIDALLGPSDKEKLPYFFHAGETNWQGTTVDENLIDAL-L----LN----TTRIGHGFALVKHPLVLQMLKERNIAV 375 (479)
T ss_pred HHHHHHHHHHHHHhCCCCEEEecCCcCCCCCCchhHHHHHH-H----cC----CccccCcccccCCHHHHHHHHHhCCeE
Confidence 444444444 55569999999996331 123344433 1 12 55889998765 78999999999999
Q ss_pred EecccccccchhHHHHhhChhhhhhhhhhHHHHHHCCCeeeecCCCCCCC--CCHHHHHHHHHcccCCCCCCCCCCCCCC
Q 008063 437 SMQPQHLLDDADSARKKLGVDRAERESYLFQSLLANNALLALGSDWPVAD--INPLCAIRTAMKRIPPGWDNAWIPSERI 514 (579)
Q Consensus 437 ~~~p~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l 514 (579)
.+||.+|.... .... -...|++.|+++|++++++||.|... ..+-.+.+.+..... ...+
T Consensus 376 EvCP~SN~~l~--------~v~~-~~~HPl~~lla~Gvpv~InSDDP~~~~~t~Ls~ef~~a~~~~~---------~~~~ 437 (479)
T TIGR01431 376 EVNPISNQVLQ--------LVAD-LRNHPCAYLFADNYPMVISSDDPAFWGATPLSHDFYIAFMGLA---------SAKA 437 (479)
T ss_pred EECccchhhhc--------ccCC-cccChHHHHHHCCCcEEEeCCCccccCCCCchHHHHHHHHHhc---------ccCC
Confidence 99999986322 1111 23468999999999999999987542 234445444443211 1114
Q ss_pred CHHHHHHHHcHHHHHhcccCC
Q 008063 515 SLTDALIAHTLSAARACFLEN 535 (579)
Q Consensus 515 s~~~al~~~T~npA~~lgl~~ 535 (579)
++.+ |.....|..++-.+++
T Consensus 438 ~l~~-L~~la~NSi~~Sfl~~ 457 (479)
T TIGR01431 438 DLRT-LKQLALNSIKYSALSE 457 (479)
T ss_pred CHHH-HHHHHHHHHHHHCCCH
Confidence 5655 4444467777666553
|
Members of this family have been described as secreted proteins with growth factor activity and regions of adenosine deaminase homology in insects, mollusks, and vertebrates. |
| >COG1099 Predicted metal-dependent hydrolases with the TIM-barrel fold [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.0065 Score=56.01 Aligned_cols=136 Identities=19% Similarity=0.188 Sum_probs=89.0
Q ss_pred HHHHHHHHHHHHHCCCeEEEEecch---HHHHHHHHHHHHHHHhcCCCCCCceEeeccCCChhhHHHHhhCC--cEEEec
Q 008063 365 LESLLSMTMASDKSGLQVAIHAIGD---RANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLASGTAARFGDQG--IVASMQ 439 (579)
Q Consensus 365 ~~~l~~~~~~a~~~g~~i~iH~~g~---~~~~~~~~~~~~~~~~~~~~~~~~~i~H~~~~~~~~~~~~~~~~--i~~~~~ 439 (579)
.+.+++-+++|++.++|+.+|.... .....+++... ..++......+.|+ +.+.++.+-+.+ +.+.++
T Consensus 113 ~evf~~QL~LA~e~dvPviVHTPr~nK~e~t~~ildi~~----~~~l~~~lvvIDH~---N~etv~~vld~e~~vGlTvq 185 (254)
T COG1099 113 KEVFREQLELARELDVPVIVHTPRRNKKEATSKILDILI----ESGLKPSLVVIDHV---NEETVDEVLDEEFYVGLTVQ 185 (254)
T ss_pred HHHHHHHHHHHHHcCCcEEEeCCCCcchhHHHHHHHHHH----HcCCChhheehhcc---cHHHHHHHHhccceEEEEec
Confidence 4457888999999999999998632 23344444333 34455556667775 566777665555 455667
Q ss_pred ccccccchhHHHHhhChhhhhhhhhhHHHHHHCC-CeeeecCCCCCCCCCHHHHHHHHHcccCCCCCCCCCCCCCCCHHH
Q 008063 440 PQHLLDDADSARKKLGVDRAERESYLFQSLLANN-ALLALGSDWPVADINPLCAIRTAMKRIPPGWDNAWIPSERISLTD 518 (579)
Q Consensus 440 p~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~~G-i~v~~gsD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~ 518 (579)
|.- +.+++ ......+.| -++.+.||..+...++..--+.++.. ...|+..++
T Consensus 186 PgK-----------lt~~e------AveIV~ey~~~r~ilnSD~~s~~sd~lavprtal~m----------~~~gv~~~~ 238 (254)
T COG1099 186 PGK-----------LTVEE------AVEIVREYGAERIILNSDAGSAASDPLAVPRTALEM----------EERGVGEEE 238 (254)
T ss_pred CCc-----------CCHHH------HHHHHHHhCcceEEEecccccccccchhhhHHHHHH----------HHhcCCHHH
Confidence 742 22222 245556667 57999999877766666555554432 335689999
Q ss_pred HHHHHcHHHHHhcccC
Q 008063 519 ALIAHTLSAARACFLE 534 (579)
Q Consensus 519 al~~~T~npA~~lgl~ 534 (579)
.-+.+-.|+-+++|++
T Consensus 239 i~kV~~~NA~~~~~l~ 254 (254)
T COG1099 239 IEKVVRENALSFYGLS 254 (254)
T ss_pred HHHHHHHHHHHHhCcC
Confidence 8888888888888763
|
|
| >PF01026 TatD_DNase: TatD related DNase The Pfam entry finds members not in the Prosite definition | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.01 Score=58.22 Aligned_cols=133 Identities=19% Similarity=0.129 Sum_probs=85.7
Q ss_pred HHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhcCCCCCCceEeeccCCChhhHHHHhhCCcEEEeccccccc
Q 008063 366 ESLLSMTMASDKSGLQVAIHAIGDRANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLASGTAARFGDQGIVASMQPQHLLD 445 (579)
Q Consensus 366 ~~l~~~~~~a~~~g~~i~iH~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~H~~~~~~~~~~~~~~~~i~~~~~p~~~~~ 445 (579)
+.+.+.+++|++++.|+.+|+.+ +...+++.+++.... ..-.+.|+...+.+.++.+.+.|..++..+.....
T Consensus 111 ~vF~~ql~lA~~~~~pv~iH~r~--a~~~~l~il~~~~~~-----~~~~i~H~f~g~~~~~~~~~~~g~~~S~~~~~~~~ 183 (255)
T PF01026_consen 111 EVFERQLELAKELNLPVSIHCRK--AHEELLEILKEYGPP-----NLRVIFHCFSGSPEEAKKFLDLGCYFSFSGAITFK 183 (255)
T ss_dssp HHHHHHHHHHHHHTCEEEEEEES--HHHHHHHHHHHTTGG-----TSEEEETT--S-HHHHHHHHHTTEEEEEEGGGGST
T ss_pred HHHHHHHHHHHHhCCcEEEecCC--cHHHHHHHHHhcccc-----ceeEEEecCCCCHHHHHHHHhcCceEEeccccccc
Confidence 45788899999999999999976 345666666554311 12579999999999999999999999998876542
Q ss_pred chhHHHHhhChhhhhhhhhhHHHHHH-CCC-eeeecCCCCCCCC----------CHHHHHHHHHcccCCCCCCCCCCCCC
Q 008063 446 DADSARKKLGVDRAERESYLFQSLLA-NNA-LLALGSDWPVADI----------NPLCAIRTAMKRIPPGWDNAWIPSER 513 (579)
Q Consensus 446 ~~~~~~~~l~~~~~~~~~~~l~~l~~-~Gi-~v~~gsD~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~ 513 (579)
..+ ..+.+.+ -.. ++.+-||+|...+ ......-..+.+ -.+
T Consensus 184 ~~~----------------~~~~~~~~ip~drillETD~P~~~~~~~~~~~~~p~~i~~~~~~la~-----------~~~ 236 (255)
T PF01026_consen 184 NSK----------------KVRELIKAIPLDRILLETDAPYLAPDPYRGKPNEPSNIPKVAQALAE-----------IKG 236 (255)
T ss_dssp TSH----------------HHHHHHHHS-GGGEEEE-BTTSSECTTSTTSE--GGGHHHHHHHHHH-----------HHT
T ss_pred ccH----------------HHHHHHhcCChhhEEEcCCCCcCCccccCCCCCChHHHHHHHHHHHH-----------HcC
Confidence 211 1122222 222 5899999875422 112222222221 124
Q ss_pred CCHHHHHHHHcHHHHHhcc
Q 008063 514 ISLTDALIAHTLSAARACF 532 (579)
Q Consensus 514 ls~~~al~~~T~npA~~lg 532 (579)
++++++.+....|..+++|
T Consensus 237 ~~~e~~~~~~~~N~~r~f~ 255 (255)
T PF01026_consen 237 ISLEELAQIIYENAKRLFG 255 (255)
T ss_dssp STHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHhC
Confidence 8999999999999998875
|
; InterPro: IPR001130 This family of proteins are related to a large superfamily of metalloenzymes []. TatD, a member of this family has been shown experimentally to be a DNase enzyme []. Allantoinase 3.5.2.5 from EC, N-isopropylammelide isopropyl amidohydrolase 3.5.1 from EC and the SCN1 protein from fission yeast belong to this family.; GO: 0016888 endodeoxyribonuclease activity, producing 5'-phosphomonoesters; PDB: 3E2V_B 1XWY_A 3GUW_D 3RCM_A 1ZZM_A 2XIO_A 1J6O_A 2GZX_A 3IPW_A 2Y1H_A .... |
| >KOG1097 consensus Adenine deaminase/adenosine deaminase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0036 Score=63.19 Aligned_cols=142 Identities=18% Similarity=0.145 Sum_probs=92.9
Q ss_pred HHHHHHHHHHHHHCCCeEEEEecchH-HHHHHHHHHHHHHHhcCCCCCCceEeeccCCChhh--HHHHhhCCcEEEeccc
Q 008063 365 LESLLSMTMASDKSGLQVAIHAIGDR-ANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLASGT--AARFGDQGIVASMQPQ 441 (579)
Q Consensus 365 ~~~l~~~~~~a~~~g~~i~iH~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~i~H~~~~~~~~--~~~~~~~~i~~~~~p~ 441 (579)
.......+..+.+.|+.+.+||-+.. .....-+.+. . . ...+|.|+..+.++. +.+++..++.+.+||.
T Consensus 226 ~~~f~~vl~~~~~~gi~~t~HaGE~~~~~~~v~~~LD-~---l----~~~RIGHG~~l~~dp~L~~~~k~~nI~lEiCP~ 297 (399)
T KOG1097|consen 226 LSLFLEVLAKAPAKGIHLTFHAGETNGGASVVKNALD-L---L----GTERIGHGYFLTKDPELINLLKSRNIALEICPI 297 (399)
T ss_pred hhhhHHHHHhhhhcCCcEEEEccccCCChHHHHHHHH-h---h----CCccccCceeccCCHHHHHHHHhcCceEEEccc
Confidence 34556666667779999999997442 2222222222 1 1 155899999887655 9999999999999999
Q ss_pred ccccchhHHHHhhChhhhhhhhhhHHHHHHCCCeeeecCCCCCCCCC--HHHHHHHHHcccCCCCCCCCCCCCCCCHHHH
Q 008063 442 HLLDDADSARKKLGVDRAERESYLFQSLLANNALLALGSDWPVADIN--PLCAIRTAMKRIPPGWDNAWIPSERISLTDA 519 (579)
Q Consensus 442 ~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~a 519 (579)
+|.-.+ .... -...|++++.+.|++++++||.|..-.. .-...+.++.... . +++.++.
T Consensus 298 SN~vl~--------~v~d-~rnhp~~~~~~~~vP~vI~sDDP~~f~~~~Lt~dfy~A~~~~~---------~-~~~~~~l 358 (399)
T KOG1097|consen 298 SNQVLG--------LVSD-LRNHPVARLLAAGVPVVINSDDPGFFGAAPLTLDFYLAFLGIA---------P-NLDLREL 358 (399)
T ss_pred hhhhee--------cccc-ccccHHHHHHhCCCCEEEeCCCcccccCccccHHHHHHHHhcc---------c-cCCHHHH
Confidence 986322 2111 3456899999999999999997754322 1233333333221 1 4788887
Q ss_pred HHHHcHHHHHhcccC
Q 008063 520 LIAHTLSAARACFLE 534 (579)
Q Consensus 520 l~~~T~npA~~lgl~ 534 (579)
.+++ .|..+.--++
T Consensus 359 ~~la-~nai~~S~l~ 372 (399)
T KOG1097|consen 359 KRLA-LNAIKYSFLS 372 (399)
T ss_pred HHHH-HHHhhhccCC
Confidence 6665 6877776554
|
|
| >COG0418 PyrC Dihydroorotase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.21 Score=48.56 Aligned_cols=192 Identities=13% Similarity=0.183 Sum_probs=106.2
Q ss_pred CHHHHHHHHHHHHHCCCeEEEEec-chHHHH------HHHH-HHHHHHHhcCCCCCCceEeeccCCChhhHHHHhhCCcE
Q 008063 364 ELESLLSMTMASDKSGLQVAIHAI-GDRAND------LVLD-MYKSVVVTTGKRDQRFRIEHAQHLASGTAARFGDQGIV 435 (579)
Q Consensus 364 ~~~~l~~~~~~a~~~g~~i~iH~~-g~~~~~------~~~~-~~~~~~~~~~~~~~~~~i~H~~~~~~~~~~~~~~~~i~ 435 (579)
+.+.+..+++...+.|+++.+|.. .+..++ ..++ .++....+. ...+..++|++.-+.-++-+-...++.
T Consensus 116 ~~~~~~pvle~Mq~~gmpLlvHGEvt~~~vDifdrE~~Fi~~vl~pl~~~f--P~LKIV~EHiTT~dav~~v~~~~~nla 193 (344)
T COG0418 116 DIEKIYPVLEAMQKIGMPLLVHGEVTDAEVDIFDREAAFIESVLEPLRQRF--PKLKIVLEHITTKDAVEYVKDANNNLA 193 (344)
T ss_pred cHHHHHHHHHHHHHcCCeEEEecccCCccccchhhHHHHHHHHHHHHHhhC--CcceEEEEEeccHHHHHHHHhcCccee
Confidence 467788899999999999999975 111111 2222 444444443 367889999876554444343344478
Q ss_pred EEecccccccchhHHH-Hh-------hCh-hhhhhhhhhHHHHHHCCC-eeeecCCCCCCCC-------------CHHHH
Q 008063 436 ASMQPQHLLDDADSAR-KK-------LGV-DRAERESYLFQSLLANNA-LLALGSDWPVADI-------------NPLCA 492 (579)
Q Consensus 436 ~~~~p~~~~~~~~~~~-~~-------l~~-~~~~~~~~~l~~l~~~Gi-~v~~gsD~~~~~~-------------~~~~~ 492 (579)
..++|+|...+..... .. ++- .|. +....+..+.-.|- ++.+|||+..-.. +-..+
T Consensus 194 ATIT~hHL~~nrnd~l~Ggi~Ph~fClPilKr~-~hr~AL~~aa~sg~~kfFlGtDSAPH~~~~Ke~~cgcAG~fsap~a 272 (344)
T COG0418 194 ATITPHHLLLNRNDMLVGGIRPHLFCLPILKRE-THREALREAATSGHPKFFLGTDSAPHARSRKESACGCAGIFSAPFA 272 (344)
T ss_pred eEeehhheeeehhhhhcCCCCcceeeeccccch-hhHHHHHHHHhcCCCcEEecCCCCCCcccccccccccccccccHhH
Confidence 8889998775544332 11 010 111 44445666665555 7999999653221 11111
Q ss_pred HHHHHcccCCCCCCCCCCCCCCCHHHHHHHHcHHHHHhcccCCccccccCCCcccEEEeCCCCCCChhhcc-CCeEEEEE
Q 008063 493 IRTAMKRIPPGWDNAWIPSERISLTDALIAHTLSAARACFLENDVGSLSPGKIADFVILSTSSWEDFAAEV-SASIEATY 571 (579)
Q Consensus 493 ~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~npA~~lgl~~~~G~I~~G~~ADlvvld~~~~~~~~~~~-~~~v~~v~ 571 (579)
+..... ++-+.+.+..-| .-++.|+.+++|++ ..-+.+.+...+|..++.+. .....-.+
T Consensus 273 l~~~Ae--------vFE~~naL~~Le--aF~S~nGp~fY~lp---------~n~~~itL~k~~~~vP~~i~~g~~~vvpf 333 (344)
T COG0418 273 LPLYAE--------VFEEENALDNLE--AFASDNGPKFYGLP---------RNDKTITLVKEEWQVPESIPFGDDIVVPF 333 (344)
T ss_pred HHHHHH--------HHHHhcHHHHHH--HHHhhcCcceeccc---------CCCceEEEEeccccccceeccCCCceEEe
Confidence 111110 011222233333 35677899999986 34455677777776444433 23445566
Q ss_pred ECCEEe
Q 008063 572 VSGVQA 577 (579)
Q Consensus 572 v~G~~v 577 (579)
..|+.+
T Consensus 334 ~aGe~L 339 (344)
T COG0418 334 RAGETL 339 (344)
T ss_pred cCCCee
Confidence 666543
|
|
| >cd01311 PDC_hydrolase 2-pyrone-4,6-dicarboxylic acid (PDC) hydrolase hydrolyzes PDC to yield 4-oxalomesaconic acid (OMA) or its tautomer, 4-carboxy-2-hydroxymuconic acid (CHM) | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.2 Score=49.28 Aligned_cols=107 Identities=11% Similarity=0.097 Sum_probs=59.0
Q ss_pred CHHHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhcCCCCCCceEeeccCCC----------hhhHHHHhhCC
Q 008063 364 ELESLLSMTMASDKSGLQVAIHAIGDRANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLA----------SGTAARFGDQG 433 (579)
Q Consensus 364 ~~~~l~~~~~~a~~~g~~i~iH~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~H~~~~~----------~~~~~~~~~~~ 433 (579)
+.+.+.++++.+.++|+++.+|+. .... ..+....... +.+..+.|+.... .+.++.++..+
T Consensus 108 ~~~~~~~~~~~~~~~gl~v~~~~~-~~~l----~~l~~l~~~~---~l~ivldH~G~p~~~~~~~~~~~~~~l~~l~~pN 179 (263)
T cd01311 108 NKDELDEIAKRAAELGWHVQVYFD-AVDL----PALLPFLQKL---PVAVVIDHFGRPDVTKGVDGAEFAALLKLIEEGN 179 (263)
T ss_pred CHHHHHHHHHHHHHcCCEEEEEeC-HhhH----HHHHHHHHHC---CCCEEEECCCCCCCCCCCCCHhHHHHHHHHhcCC
Confidence 456788999999999999999984 2222 2233333333 5688999987543 12233332235
Q ss_pred cEEEecccccccchhHHHHhhChhhhhhhhhhHHHHHHCCC-eeeecCCCCCCC
Q 008063 434 IVASMQPQHLLDDADSARKKLGVDRAERESYLFQSLLANNA-LLALGSDWPVAD 486 (579)
Q Consensus 434 i~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~~Gi-~v~~gsD~~~~~ 486 (579)
+.+.++-........ .... ....-++.+.+.|. ++++|||+|...
T Consensus 180 V~~k~Sg~~~~~~~~-----~~~~---~~~~~~~~~~~~g~dRlmfGSD~P~~~ 225 (263)
T cd01311 180 VWVKVSGPYRLSVKQ-----EAYA---DVIAFARQIVAAAPDRLVWGTDWPHPR 225 (263)
T ss_pred EEEEecchhhcCCCC-----CCHH---HHHHHHHHHHHhCCCcEEEeCCCCCCC
Confidence 555444321110000 0000 11223345555666 799999998753
|
This reaction is part of the protocatechuate (PCA) 4,5-cleavage pathway. PCA is one of the most important intermediate metabolites in the bacterial pathways for various phenolic compounds, including lignin, which is the most abundant aromatic material in nature. |
| >PF02126 PTE: Phosphotriesterase family; InterPro: IPR001559 Synonym(s): Paraoxonase, A-esterase, Aryltriphosphatase, Phosphotriesterase, Paraoxon hydrolase Bacteria such as Brevundimonas diminuta (Pseudomonas diminuta) harbour a plasmid that carries the gene for Aryldialkylphosphatase (3 | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.016 Score=57.98 Aligned_cols=247 Identities=17% Similarity=0.148 Sum_probs=129.1
Q ss_pred HHHHHHHHHHHHHhcCccEEEeCCcCCCCCccccchHHHHHHHHHHhhcCCCeeEEEEccCccc-h---------hhHHH
Q 008063 245 RREALLRASNLALSRGVTTVVDFGRYYPGESVQLSWEDFADVYQWASYSEKMKIRVCLFFPLET-W---------SSLAD 314 (579)
Q Consensus 245 ~~~~~~~~~~~~~~~Git~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~~~~-~---------~~~~~ 314 (579)
..+.....++.+.+.|..+++|.... ..+.++ ..++.+.++..+.+-....+.... + ++..+
T Consensus 36 ~~~~~~~El~~~k~~Gg~tiVd~T~~----g~GRd~----~~l~~is~~tGv~II~~TG~y~~~~~p~~~~~~s~e~la~ 107 (308)
T PF02126_consen 36 DVEAAVAELKEFKAAGGRTIVDATPI----GLGRDV----EALREISRRTGVNIIASTGFYKEPFYPEWVREASVEELAD 107 (308)
T ss_dssp HHHHHHHHHHHHHHTTEEEEEE--SG----GGTB-H----HHHHHHHHHHT-EEEEEEEE-SGGCSCHHHHTSHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCCEEEecCCc----ccCcCH----HHHHHHHHHhCCeEEEeCCCCccccCChhhhcCCHHHHHH
Confidence 45566667788899999999998643 222233 455555555555555544222111 1 12222
Q ss_pred HHH-hcCC-CCCCceEEceEEEEEcCccCCCcccccCCCCCCCCCCcccCCCHHHHHHHHHHHHHCCCeEEEEecchH-H
Q 008063 315 LIN-KTGH-VLSDWVYLGGVKAFADGSLGSNSALFHEPYADEPHNYGLQVMELESLLSMTMASDKSGLQVAIHAIGDR-A 391 (579)
Q Consensus 315 ~~~-~~~~-~~~~~~~~~g~k~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~i~iH~~g~~-~ 391 (579)
... +... ....-++.+-+|...+. .+ +...+...+++..+++++.|+++.+|+.... .
T Consensus 108 ~~i~Ei~~GidgT~ikaG~Ik~~~~~----------~~---------it~~E~k~lrAaa~A~~~TG~pI~~H~~~g~~~ 168 (308)
T PF02126_consen 108 LFIREIEEGIDGTGIKAGIIKEIGSS----------NP---------ITPLEEKVLRAAARAHKETGAPISTHTGRGTRM 168 (308)
T ss_dssp HHHHHHHT-STTSSB-ESEEEEEEBT----------TB---------CEHHHHHHHHHHHHHHHHHT-EEEEEESTTGTC
T ss_pred HHHHHHHhcCCCCccchhheeEeecc----------CC---------CCHHHHHHHHHHHHHHHHhCCeEEEcCCCCCcC
Confidence 221 1111 12234555555554322 01 1112345678888888999999999997443 3
Q ss_pred HHHHHHHHHHHHHhcCCCCCCceEeeccCCCh-hhHHHHhhCCcEEEecccccccchhHHHHhhChhhhhhhhhhHHHHH
Q 008063 392 NDLVLDMYKSVVVTTGKRDQRFRIEHAQHLAS-GTAARFGDQGIVASMQPQHLLDDADSARKKLGVDRAERESYLFQSLL 470 (579)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~i~H~~~~~~-~~~~~~~~~~i~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~ 470 (579)
..+.++.+++ .|....+..+.|+-...+ +....+.+.|+.+...---....+.......+....++....+..|.
T Consensus 169 ~~e~~~il~e----~Gv~~~rvvigH~D~~~D~~y~~~la~~G~~l~~D~~g~~~~g~~~~~~~~~~~d~~ri~~l~~L~ 244 (308)
T PF02126_consen 169 GLEQLDILEE----EGVDPSRVVIGHMDRNPDLDYHRELADRGVYLEFDTIGREFSGKDKNPRVGYPPDEERIELLKELI 244 (308)
T ss_dssp HHHHHHHHHH----TT--GGGEEETSGGGST-HHHHHHHHHTT-EEEETTTT-B-TTTTTCHSCTTS-HHHHHHHHHHHH
T ss_pred HHHHHHHHHH----cCCChhHeEEeCCCCCCCHHHHHHHHhcCCEEEecCCcccccCcccCccCCCCCHHHHHHHHHHHH
Confidence 4555555544 466666999999985443 56678888999887743310000000000000000114456788999
Q ss_pred HCCC--eeeecCCCCC---C-CCCHH-----HHHHHHHcccCCCCCCCCCCCCCCCHHHHHHHHcHHHHHhc
Q 008063 471 ANNA--LLALGSDWPV---A-DINPL-----CAIRTAMKRIPPGWDNAWIPSERISLTDALIAHTLSAARAC 531 (579)
Q Consensus 471 ~~Gi--~v~~gsD~~~---~-~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~npA~~l 531 (579)
+.|. .+.++.|... . ..... .-+...+.++ .+.|++.+++=++...||+++|
T Consensus 245 ~~Gy~~qIlLS~D~~~k~~~~~~gg~g~~~~~i~~~fiP~L---------~~~Gv~~~~i~~ilv~NP~r~l 307 (308)
T PF02126_consen 245 EEGYADQILLSHDIGRKSRLYRYGGGGYGYIYILTRFIPRL---------KERGVSEEDIDKILVENPARIL 307 (308)
T ss_dssp HTTTGGGEEE-HHHESEEGSSSCCHHHHTTTHHHHTHHHHH---------HHTTS-HHHHHHHHTHHHHHHH
T ss_pred HcCCcCcEEEeccccccccccccCCCCccHHHHHHHHHHHH---------HHcCCCHHHHHHHHHHCHHHHc
Confidence 9998 7999999543 1 11111 0111112211 2457999999999999999986
|
1.8.1 from EC) (PTE) (also known as parathion hydrolase). This enzyme has attracted interest because of its potential use in the detoxification of chemical waste and warfare agents and its ability to degrade agricultural pesticides such as parathion. It acts specifically on synthetic organophosphate triesters and phosphorofluoridates. It does not seem to have a natural occuring substrate and may thus have optimally evolved for utilizing paraoxon. Aryldialkylphosphatase belongs to a family [, ] of enzymes that possess a binuclear zinc metal centre at their active site. The two zinc ions are coordinated by six different residues, six of which being histidines. This family so far includes, in addition to the parathion hydrolase, the following proteins: Escherichia coli protein Php, the substrate of which is not yet known. Mycobacterium tuberculosis phosphotriesterase homology protein Rv0230C. Mammalian phosphotriesterase related protein (PTER) (RPR-1). ; GO: 0008270 zinc ion binding, 0016788 hydrolase activity, acting on ester bonds, 0009056 catabolic process; PDB: 3MSR_A 3OVG_D 3K2G_C 1BF6_B 3OQE_A 3C86_A 3SO7_A 2D2G_A 2R1P_A 2D2H_A .... |
| >COG1735 Php Predicted metal-dependent hydrolase with the TIM-barrel fold [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.86 E-value=0.74 Score=45.07 Aligned_cols=154 Identities=14% Similarity=0.087 Sum_probs=88.2
Q ss_pred CHHHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhcCCCCCCceEeecc-CCChhh-HHHHhhCCcEEEeccc
Q 008063 364 ELESLLSMTMASDKSGLQVAIHAIGDRANDLVLDMYKSVVVTTGKRDQRFRIEHAQ-HLASGT-AARFGDQGIVASMQPQ 441 (579)
Q Consensus 364 ~~~~l~~~~~~a~~~g~~i~iH~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~H~~-~~~~~~-~~~~~~~~i~~~~~p~ 441 (579)
+...+++..++.++.|.|+.+|..+..-..+.++.+ ...|....+..+.|+. ..++-. .+.++..|+.+...--
T Consensus 150 Eek~lrAaA~A~~~Tg~Pi~tHt~~gt~g~eq~~il----~~egvdl~~v~igH~d~n~dd~~y~~~l~~~Ga~l~fD~i 225 (316)
T COG1735 150 EEKSLRAAARAHKETGAPISTHTPAGTMGLEQLRIL----AEEGVDLRKVSIGHMDPNTDDVYYQKKLADRGAFLEFDRI 225 (316)
T ss_pred HHHHHHHHHHHhhhcCCCeEEeccchhhhHHHHHHH----HHcCCChhHeeEeccCCCCChHHHHHHHHhcCceEEeccc
Confidence 345678888888999999999997443223333333 3345666699999998 444433 3456666887765432
Q ss_pred ccccchhHHHHhhChhhhhhhhhhHHHHHHCCC--eeeecCCCCCCCCCHH-HHHHHHHcccCCCCCCCC------CCCC
Q 008063 442 HLLDDADSARKKLGVDRAERESYLFQSLLANNA--LLALGSDWPVADINPL-CAIRTAMKRIPPGWDNAW------IPSE 512 (579)
Q Consensus 442 ~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~~Gi--~v~~gsD~~~~~~~~~-~~~~~~~~~~~~~~~~~~------~~~~ 512 (579)
-.. .+++.+ ....++.++.+.|. .+.++-|.+....+.+ ..+..+..+. ++...+ ....
T Consensus 226 G~d-------~y~pd~---~r~~~~~~l~~~gy~d~i~ls~d~~~~~~~~~~~~~~~~~~~~--g~~~I~~~fIP~Lk~~ 293 (316)
T COG1735 226 GKD-------KYYPDE---DRIAPLLELVARGYADLILLSHDDICLSDDVFLKSMLKANGGW--GYGYILNDFIPRLKRH 293 (316)
T ss_pred Ccc-------ccCcHH---HhhhhHHHHHHhhHhhheecccchhhhhhhHHHHhhhhhcCCc--ccchhhHhhHHHHHHc
Confidence 211 111111 34557888888887 4666633322222222 2222211111 111111 2577
Q ss_pred CCCHHHHHHHHcHHHHHhccc
Q 008063 513 RISLTDALIAHTLSAARACFL 533 (579)
Q Consensus 513 ~ls~~~al~~~T~npA~~lgl 533 (579)
|++.+++=.+.--||++++.-
T Consensus 294 Gvde~~i~~mlvdNP~r~f~~ 314 (316)
T COG1735 294 GVDEETIDTMLVDNPARLFTA 314 (316)
T ss_pred CCCHHHHHHHHhhCHHHHhcc
Confidence 899777777777899998864
|
|
| >TIGR01429 AMP_deaminase AMP deaminase | Back alignment and domain information |
|---|
Probab=94.93 E-value=0.27 Score=53.36 Aligned_cols=136 Identities=14% Similarity=0.086 Sum_probs=88.8
Q ss_pred HHHHHHHHHHHHCCCe---EEEEecchHHHHHHHHHHHHHHHhcCCCCCCceEeeccCCC--hhhHHHHhhCCcEEEecc
Q 008063 366 ESLLSMTMASDKSGLQ---VAIHAIGDRANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLA--SGTAARFGDQGIVASMQP 440 (579)
Q Consensus 366 ~~l~~~~~~a~~~g~~---i~iH~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~H~~~~~--~~~~~~~~~~~i~~~~~p 440 (579)
.-+..+=..-++.|+. +..||.+.+..+.+.+++ + ....|.|+..+. +....++...+|.+.+||
T Consensus 422 aNl~~LN~~R~~rGLnt~~LrpHaGEag~~e~l~~A~--L--------~adRIgHGi~l~~dp~L~yl~~~~qI~LevCP 491 (611)
T TIGR01429 422 ANIMVLNNFRRERGLNTFLLRPHCGEAGSVDHLVSAF--L--------TSHGINHGILLRKVPVLQYLYYLTQIPIAMSP 491 (611)
T ss_pred HHHHHHHHHHHHcCCCccceeecCCCCCCHHHHHHHh--h--------cCcccccceecCCCHHHHHHHHHcCCeEEEcC
Confidence 3344443334456665 789997555555555544 1 144788988764 344455678999999999
Q ss_pred cccccchhHHHHhhChhhhhhhhhhHHHHHHCCCeeeecCCCCCCC-C---CHHHHHHHHHcccCCCCCCCCCCCCCCCH
Q 008063 441 QHLLDDADSARKKLGVDRAERESYLFQSLLANNALLALGSDWPVAD-I---NPLCAIRTAMKRIPPGWDNAWIPSERISL 516 (579)
Q Consensus 441 ~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~ls~ 516 (579)
.++.. . ... -...|+..+++.|++++++||.+..- . .+.++...+.. ..+++.
T Consensus 492 tSN~~---l---~~~-----y~~HP~~~~~~~Gl~VSLsTDDPl~f~~T~epL~EEY~~aa~------------~~~Ls~ 548 (611)
T TIGR01429 492 LSNNS---L---FLE-----YSKNPLPEYLHKGLNVSLSTDDPLQFHYTKEALMEEYAIAAQ------------VWKLST 548 (611)
T ss_pred Ccchh---h---ccC-----hhhChHHHHHHCCCeEEEcCCCchhhCCCCCcHHHHHHHHHH------------HhCCCH
Confidence 99851 1 111 23447999999999999999987442 1 24455444432 235899
Q ss_pred HHHHHHHcHHHHHhcccCC
Q 008063 517 TDALIAHTLSAARACFLEN 535 (579)
Q Consensus 517 ~~al~~~T~npA~~lgl~~ 535 (579)
.+..+++ .|+.+.-+.++
T Consensus 549 ~Dl~eLa-rNSV~~S~~~~ 566 (611)
T TIGR01429 549 CDMCELA-RNSVLQSGFEH 566 (611)
T ss_pred HHHHHHH-HHHHHHhCCCH
Confidence 8877765 78888887764
|
This model describes AMP deaminase, a large, well-conserved eukaryotic protein involved in energy metabolism. Most members of the family have an additional, poorly alignable region of 150 amino acids or more N-terminal to the region included in the model. |
| >PF00449 Urease_alpha: Urease alpha-subunit, N-terminal domain; InterPro: IPR011612 Urease (urea amidohydrolase, 3 | Back alignment and domain information |
|---|
Probab=94.58 E-value=0.062 Score=44.09 Aligned_cols=38 Identities=34% Similarity=0.518 Sum_probs=31.0
Q ss_pred CCccEEEEcCeEEeCCCCCCeeeEEEEECCEEEEecChHH
Q 008063 43 LEADLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSA 82 (579)
Q Consensus 43 ~~~~~likn~~v~~~~~~~~~~~~v~I~~GkI~~Ig~~~~ 82 (579)
...+++|+|+.|+|..|. .+.+|-|+||||+.||....
T Consensus 64 ~~lD~VItNa~IiD~~GI--~KADIGIkdG~I~gIGkAGN 101 (121)
T PF00449_consen 64 EALDLVITNALIIDYTGI--VKADIGIKDGRIVGIGKAGN 101 (121)
T ss_dssp CC-SEEEEEEEEEETTEE--EEEEEEEETTEEEEEE-EB-
T ss_pred ccccEEEeCcEEEecCCc--EEeeEEeeCCEEEEEeccCC
Confidence 378899999999999654 78899999999999997654
|
5.1.5 from EC) catalyses the hydrolysis of urea to form ammonia and carbamate. The subunit composition of urease from different sources varies [], but each holoenzyme consists of four structural domains []: three structural domains and a nickel-binding catalytic domain common to amidohydrolases []. Urease is unique among nickel metalloenzymes in that it catalyses a hydrolysis rather than a redox reaction. In Helicobacter pylori, the gamma and beta domains are fused and called the alpha subunit (IPR008223 from INTERPRO). The catalytic subunit (called beta or B) has the same organisation as the Klebsiella alpha subunit. Jack bean (Canavalia ensiformis) urease has a fused gamma-beta-alpha organisation (IPR008221 from INTERPRO). The N-terminal domain is a composite domain and plays a major trimer stabilising role by contacting the catalytic domain of the symmetry related alpha-subunit []. ; GO: 0009039 urease activity, 0016151 nickel ion binding, 0019627 urea metabolic process; PDB: 3LA4_A 2UBP_C 3UBP_C 1UBP_C 1S3T_C 1IE7_C 4UBP_C 1E9Y_B 1E9Z_B 3QGA_O .... |
| >cd01319 AMPD AMP deaminase (AMPD) catalyzes the hydrolytic deamination of adensosine monophosphate (AMP) at position 6 of the adenine nucleotide ring | Back alignment and domain information |
|---|
Probab=94.22 E-value=0.28 Score=52.14 Aligned_cols=121 Identities=15% Similarity=0.048 Sum_probs=81.1
Q ss_pred eEEEEecchHHHHHHHHHHHHHHHhcCCCCCCceEeeccCCCh--hhHHHHhhCCcEEEecccccccchhHHHHhhChhh
Q 008063 381 QVAIHAIGDRANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLAS--GTAARFGDQGIVASMQPQHLLDDADSARKKLGVDR 458 (579)
Q Consensus 381 ~i~iH~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~H~~~~~~--~~~~~~~~~~i~~~~~p~~~~~~~~~~~~~l~~~~ 458 (579)
.+..||.+.+..+.+.+++ + + ...|.|+..+.+ ....++...+|.+.+||.++... ...
T Consensus 328 ~~r~HaGE~g~~~~l~~al--L----~----adRIGHGv~l~~dp~L~~l~~~~qI~levCPlSN~~l------~~~--- 388 (496)
T cd01319 328 VLRPHCGEAGDIDHLASAF--L----L----AHGISHGINLRKVPVLQYLYYLTQIGIAMSPLSNNSL------FLS--- 388 (496)
T ss_pred ceeeecCCCCChHHHHHHh--h----c----CcccccccccCCCHHHHHHHHHcCCeEEEecCccHhh------hcC---
Confidence 5789997655555555544 1 1 457889987743 33444667899999999998511 111
Q ss_pred hhhhhhhHHHHHHCCCeeeecCCCCCCC-C---CHHHHHHHHHcccCCCCCCCCCCCCCCCHHHHHHHHcHHHHHhcccC
Q 008063 459 AERESYLFQSLLANNALLALGSDWPVAD-I---NPLCAIRTAMKRIPPGWDNAWIPSERISLTDALIAHTLSAARACFLE 534 (579)
Q Consensus 459 ~~~~~~~l~~l~~~Gi~v~~gsD~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~npA~~lgl~ 534 (579)
-...|+..+++.|++++++||.+..- . .+.++...+.. ..+++..+..+++ .|+.+.-+.+
T Consensus 389 --~~~HP~~~~l~~Gl~VsInTDDPl~f~~t~~~L~eEY~~a~~------------~~~Ls~~Dl~eLa-rNSV~~Sf~~ 453 (496)
T cd01319 389 --YEKNPFPEFFKRGLNVSLSTDDPLQFHFTKEPLMEEYSIAAQ------------VWKLSTCDMCELA-RNSVLQSGFE 453 (496)
T ss_pred --cccChHHHHHHCCCeEEEeCCCchhhCCCCCcHHHHHHHHHH------------HcCCCHHHHHHHH-HHHHHHhCCC
Confidence 22457999999999999999987442 2 24555544442 2358998876654 7888888775
Q ss_pred C
Q 008063 535 N 535 (579)
Q Consensus 535 ~ 535 (579)
+
T Consensus 454 ~ 454 (496)
T cd01319 454 H 454 (496)
T ss_pred H
Confidence 4
|
AMPD is a diverse and highly regulated eukaryotic key enzyme of the adenylate catabolic pathway. |
| >PLN03055 AMP deaminase; Provisional | Back alignment and domain information |
|---|
Probab=94.08 E-value=0.25 Score=53.45 Aligned_cols=127 Identities=17% Similarity=0.109 Sum_probs=84.7
Q ss_pred HHHCCC---eEEEEecchHHHHHHHHHHHHHHHhcCCCCCCceEeeccCC--ChhhHHHHhhCCcEEEecccccccchhH
Q 008063 375 SDKSGL---QVAIHAIGDRANDLVLDMYKSVVVTTGKRDQRFRIEHAQHL--ASGTAARFGDQGIVASMQPQHLLDDADS 449 (579)
Q Consensus 375 a~~~g~---~i~iH~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~H~~~~--~~~~~~~~~~~~i~~~~~p~~~~~~~~~ 449 (579)
-++.|+ .+..||-+.+..+.+.+++ . ....|.|+..+ ++....++...+|.+.+||.++...
T Consensus 409 R~~rglnT~~~rpHAGEag~~~~v~~al------L----~a~RIgHGi~l~~dP~L~yl~~~~qI~LevCPlSN~~l--- 475 (602)
T PLN03055 409 RESKGLNTIKFRPHAGEAGDIDHLAAAF------L----LAHNIAHGNNLRKSPGLQYLYYLAQIGLAMSPLSNNSL--- 475 (602)
T ss_pred HHHcCCCCCCccccCCCCCCHHHHHHHh------h----CCceecCccccCCCHHHHHHHHHcCCeEEEccCcchhh---
Confidence 344454 3578886444444444433 1 14578888865 4577778889999999999998621
Q ss_pred HHHhhChhhhhhhhhhHHHHHHCCCeeeecCCCCCCC-C---CHHHHHHHHHcccCCCCCCCCCCCCCCCHHHHHHHHcH
Q 008063 450 ARKKLGVDRAERESYLFQSLLANNALLALGSDWPVAD-I---NPLCAIRTAMKRIPPGWDNAWIPSERISLTDALIAHTL 525 (579)
Q Consensus 450 ~~~~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~ 525 (579)
... -...|+..+++.|++|+++||.|... . .+.++...+.. ..+++..+..+++ .
T Consensus 476 ---~~~-----y~~HP~~~~~~~Gl~VSInTDDPl~f~tT~epL~eEY~~aa~------------~~~LS~~DL~eLa-r 534 (602)
T PLN03055 476 ---FLD-----YHRNPFPMFFARGLNVSLSTDDPLQIHLTKEPLVEEYSIAAQ------------VWKLSSCDLCEIA-R 534 (602)
T ss_pred ---ccc-----hhhChHHHHHHCCCEEEEcCCCcchhcCCCCcHHHHHHHHHH------------HhCCCHHHHHHHH-H
Confidence 111 23458999999999999999987543 1 24555544443 2358999876654 7
Q ss_pred HHHHhcccCC
Q 008063 526 SAARACFLEN 535 (579)
Q Consensus 526 npA~~lgl~~ 535 (579)
|+.+.-+++.
T Consensus 535 NSV~~Sf~~~ 544 (602)
T PLN03055 535 NSVLQSGFPH 544 (602)
T ss_pred HHHHHhcCCH
Confidence 9888887754
|
|
| >COG3618 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.90 E-value=6.9 Score=38.24 Aligned_cols=141 Identities=15% Similarity=0.174 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhcCCCCCCceEeeccCCCh---------hhHHHHhh-CCc
Q 008063 365 LESLLSMTMASDKSGLQVAIHAIGDRANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLAS---------GTAARFGD-QGI 434 (579)
Q Consensus 365 ~~~l~~~~~~a~~~g~~i~iH~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~H~~~~~~---------~~~~~~~~-~~i 434 (579)
.+.+++.++...+.|+.+.++... .++.+.+..+.. ..+.+..+.||..... +.+.++++ -++
T Consensus 123 a~~~r~~~~rL~~~gl~fdl~~~~----~ql~~~i~l~~~---~Pd~~~VldH~G~p~~~~~~~~~w~~~m~~la~~pNv 195 (279)
T COG3618 123 APAWRANVERLAKLGLHFDLQVDP----HQLPDLIPLALK---APDVNFVLDHCGRPDIKINLEDPWKAALARLARRPNV 195 (279)
T ss_pred hHHHHHHHHHHHhcCCeEEEEeCh----hhhHHHHHHHhh---CCCCCEEeccCCCCCccccccCHHHHHHHHHHhCCCe
Confidence 367899999999999999988753 222222222221 2356788999876521 22223333 333
Q ss_pred EEEecc--cccccchhHHHHhhChhhhhhhhhhHHHHHH-CC-CeeeecCCCCCCCCC-HHHHHHHHHcccCCCCCCCCC
Q 008063 435 VASMQP--QHLLDDADSARKKLGVDRAERESYLFQSLLA-NN-ALLALGSDWPVADIN-PLCAIRTAMKRIPPGWDNAWI 509 (579)
Q Consensus 435 ~~~~~p--~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~-~G-i~v~~gsD~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 509 (579)
.+=+.= .+...+ +-.+ ...+-...+.+ .| -++.+|||+|..... -+.+...+....
T Consensus 196 ~~KlSG~~~~~~~~--w~~~--------~v~p~~e~~i~~fg~dR~vfGSdwPv~~l~~~~~~~~~~~~~~--------- 256 (279)
T COG3618 196 WAKLSGVYAYSDES--WTVE--------DVRPYVEELIELFGWDRFVFGSDWPVTSLESDFASWVAATREL--------- 256 (279)
T ss_pred EEEEeeecccccCC--CCHH--------HHHHHHHHHHHhcCccceEecCCCCcccccCChHHHHHHHHHH---------
Confidence 222111 011000 0000 11112233333 46 489999999987632 222222222211
Q ss_pred CCCCCCHHHHHHHHcHHHHHhccc
Q 008063 510 PSERISLTDALIAHTLSAARACFL 533 (579)
Q Consensus 510 ~~~~ls~~~al~~~T~npA~~lgl 533 (579)
..+ +..+=-+..-.||++++++
T Consensus 257 -v~~-~~~er~~i~~~NA~rly~~ 278 (279)
T COG3618 257 -VPG-DAAERARILVDNARRLYRL 278 (279)
T ss_pred -cCC-CHHHHHHHHhhCHHHHhCC
Confidence 011 4666667777788887654
|
|
| >PRK06361 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=93.19 E-value=0.43 Score=45.25 Aligned_cols=97 Identities=10% Similarity=-0.020 Sum_probs=65.3
Q ss_pred CceEeeccCCChhhHHHHhhCCcEEEecccccccchhHHHHhhChhhhhhhhhhHHHHHHCCCeeeecCCCCCCCCCHHH
Q 008063 412 RFRIEHAQHLASGTAARFGDQGIVASMQPQHLLDDADSARKKLGVDRAERESYLFQSLLANNALLALGSDWPVADINPLC 491 (579)
Q Consensus 412 ~~~i~H~~~~~~~~~~~~~~~~i~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD~~~~~~~~~~ 491 (579)
-..+.|...+..+.++.+++.++.+.++...... . ....-++...+.|++++++||.. .+.+..
T Consensus 114 ~dvlaHpd~~~~~~~~~~~~~~~~lEin~~~~~~---------~-----~~~~~l~~a~~~gi~vv~~SDaH-~~~d~~- 177 (212)
T PRK06361 114 VDILAHPGLITEEEAELAAENGVFLEITARKGHS---------L-----TNGHVARIAREAGAPLVINTDTH-APSDLI- 177 (212)
T ss_pred CcEecCcchhhHHHHHHHHHcCeEEEEECCCCcc---------c-----chHHHHHHHHHhCCcEEEECCCC-CHHHHH-
Confidence 4567777666777888899999999887532110 0 11123566677899999999975 332222
Q ss_pred HHHHHHcccCCCCCCCCCCCCCCCHHHHHHHHcHHHHHhccc
Q 008063 492 AIRTAMKRIPPGWDNAWIPSERISLTDALIAHTLSAARACFL 533 (579)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~npA~~lgl 533 (579)
.+..++.- ....|++.++++++.+.||+..|+.
T Consensus 178 ~~~~~~~i---------~~~~gl~~~~v~~~~~~~~~~~~~~ 210 (212)
T PRK06361 178 TYEFARKV---------ALGAGLTEKELEEALENNPKLLLKR 210 (212)
T ss_pred HHHHHHHH---------HcCCCCCHHHHHHHHHHhHHHHHHh
Confidence 33333221 1456799999999999999999874
|
|
| >PLN02768 AMP deaminase | Back alignment and domain information |
|---|
Probab=92.75 E-value=0.57 Score=52.00 Aligned_cols=121 Identities=13% Similarity=0.038 Sum_probs=81.6
Q ss_pred eEEEEecchHHHHHHHHHHHHHHHhcCCCCCCceEeeccCCC--hhhHHHHhhCCcEEEecccccccchhHHHHhhChhh
Q 008063 381 QVAIHAIGDRANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLA--SGTAARFGDQGIVASMQPQHLLDDADSARKKLGVDR 458 (579)
Q Consensus 381 ~i~iH~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~H~~~~~--~~~~~~~~~~~i~~~~~p~~~~~~~~~~~~~l~~~~ 458 (579)
.+..||-+.+..+.+.+++ + ....|.|+..+. +....++...+|.+.+||.++.. . ...
T Consensus 651 ~fRPHAGEag~~e~I~~Al--L--------~AdRIgHGv~l~kdP~LqyL~~l~qIgLevCPlSN~~---l---~~~--- 711 (835)
T PLN02768 651 KFRPHSGEAGDIDHLAATF--L--------TCHNIAHGINLRKSPVLQYLYYLAQIGLAMSPLSNNS---L---FLD--- 711 (835)
T ss_pred ccccccCCCCCHHHHHHHH--h--------cCCccCCccccCcCHHHHHHHHHcCCeEEECCCcchh---h---hcc---
Confidence 3678887555555555554 1 134678887663 44555777789999999999862 1 111
Q ss_pred hhhhhhhHHHHHHCCCeeeecCCCCCCC-C---CHHHHHHHHHcccCCCCCCCCCCCCCCCHHHHHHHHcHHHHHhcccC
Q 008063 459 AERESYLFQSLLANNALLALGSDWPVAD-I---NPLCAIRTAMKRIPPGWDNAWIPSERISLTDALIAHTLSAARACFLE 534 (579)
Q Consensus 459 ~~~~~~~l~~l~~~Gi~v~~gsD~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~npA~~lgl~ 534 (579)
-...|++.+++.|++|++.||.+... . .+.++...+.. ..+++..+..+++ .|....-+++
T Consensus 712 --y~~HPf~~f~~~GL~VSLNTDDPL~fhtT~epL~EEYsvAak------------~~~LS~~DL~ELa-rNSV~aSff~ 776 (835)
T PLN02768 712 --YHRNPFPMFFLRGLNVSLSTDDPLQIHLTKEPLVEEYSIAAS------------VWKLSSCDLCEIA-RNSVYQSGFS 776 (835)
T ss_pred --hhhChHHHHHHCCCEEEEcCCCccccCCCCCCHHHHHHHHHH------------HhCcCHHHHHHHH-HHHHHHhcCC
Confidence 23458999999999999999987553 2 25555544443 2358999877765 7888888776
Q ss_pred C
Q 008063 535 N 535 (579)
Q Consensus 535 ~ 535 (579)
.
T Consensus 777 ~ 777 (835)
T PLN02768 777 H 777 (835)
T ss_pred H
Confidence 4
|
|
| >PRK08392 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=91.98 E-value=3.9 Score=38.79 Aligned_cols=44 Identities=9% Similarity=0.027 Sum_probs=30.3
Q ss_pred hhHHHHhhCCcEEEecccccccchhHHHHhhChhhhhhhhhhHHHHHHCCCeeeecCCCC
Q 008063 424 GTAARFGDQGIVASMQPQHLLDDADSARKKLGVDRAERESYLFQSLLANNALLALGSDWP 483 (579)
Q Consensus 424 ~~~~~~~~~~i~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD~~ 483 (579)
+.++.+++.|+.+.++.... ++ ...-++.+.+.|+++++|||+-
T Consensus 141 ~i~~~~~~~g~~lEiNt~~~----------~p------~~~~l~~~~~~G~~~~igSDAH 184 (215)
T PRK08392 141 EILDLAEAYGKAFEISSRYR----------VP------DLEFIRECIKRGIKLTFASDAH 184 (215)
T ss_pred HHHHHHHHhCCEEEEeCCCC----------CC------CHHHHHHHHHcCCEEEEeCCCC
Confidence 34567788888888775321 11 1123678888999999999964
|
|
| >PTZ00310 AMP deaminase; Provisional | Back alignment and domain information |
|---|
Probab=91.90 E-value=0.78 Score=54.14 Aligned_cols=126 Identities=13% Similarity=0.043 Sum_probs=85.9
Q ss_pred HHCCC---eEEEEecchHHHHHHHHHHHHHHHhcCCCCCCceEeeccCCC--hhhHHHHhhCCcEEEecccccccchhHH
Q 008063 376 DKSGL---QVAIHAIGDRANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLA--SGTAARFGDQGIVASMQPQHLLDDADSA 450 (579)
Q Consensus 376 ~~~g~---~i~iH~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~H~~~~~--~~~~~~~~~~~i~~~~~p~~~~~~~~~~ 450 (579)
++.|+ .+..||-+.+..+.+.+++ + ....|.|+..+. +....++...+|.+.+||.++.. .
T Consensus 1103 ~~rglnTf~~rpHAGEag~~~hI~~Al--L--------~a~RIgHGi~l~~dp~L~yl~~l~qI~LevCPlSN~~---l- 1168 (1453)
T PTZ00310 1103 ASRGFSTFALRPHCGESGSMDHLYGAF--L--------CANSICHGINLRNDPPMQYLYYLAQIGLHVSPLSNNA---L- 1168 (1453)
T ss_pred HHCCCCCcCccccCCCCCCHHHHHHHH--h--------CCccccchhhhCcCHHHHHHHHHcCCeEEECCCchHh---h-
Confidence 44555 4678887555556655554 1 145789998764 45556788899999999999852 1
Q ss_pred HHhhChhhhhhhhhhHHHHHHCCCeeeecCCCCCCC-CC---HHHHHHHHHcccCCCCCCCCCCCCCCCHHHHHHHHcHH
Q 008063 451 RKKLGVDRAERESYLFQSLLANNALLALGSDWPVAD-IN---PLCAIRTAMKRIPPGWDNAWIPSERISLTDALIAHTLS 526 (579)
Q Consensus 451 ~~~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~n 526 (579)
... -...|+..+++.|++++++||.+... .. ..++...+.. ..+++..+..+++ .|
T Consensus 1169 --~~s-----y~~hP~~~f~~~Gl~VSLnTDDPl~f~tT~EpL~eEYsiaa~------------~~~LS~~Dl~ela-rN 1228 (1453)
T PTZ00310 1169 --FLA-----FLENPFPVFFHRGLNVSLSTDDPLMFHQTQEPLIEEYSIAAR------------VWGLSLNDLCEIA-RN 1228 (1453)
T ss_pred --hhc-----hhhCcHHHHHHCCCEEEECCCCccccCCCcccHHHHHHHHHH------------HhCCCHHHHHHHH-HH
Confidence 112 23458999999999999999987442 22 4445443332 3458999977765 79
Q ss_pred HHHhcccCC
Q 008063 527 AARACFLEN 535 (579)
Q Consensus 527 pA~~lgl~~ 535 (579)
+...-|.+.
T Consensus 1229 SV~~SGf~~ 1237 (1453)
T PTZ00310 1229 SVLQSGFDA 1237 (1453)
T ss_pred HHHHcCCCH
Confidence 988888763
|
|
| >PF12890 DHOase: Dihydro-orotase-like; InterPro: IPR024403 This entry represents a small family of dihydro-orotase-like proteins from bacteria | Back alignment and domain information |
|---|
Probab=91.41 E-value=0.064 Score=45.46 Aligned_cols=20 Identities=45% Similarity=1.016 Sum_probs=17.8
Q ss_pred CCeeecccccccccccccCc
Q 008063 98 GKVVVPGFIDSHVHFIPGGL 117 (579)
Q Consensus 98 g~~V~PG~ID~H~H~~~~~~ 117 (579)
|++++|||||.|+|+..++.
T Consensus 1 ~kli~~g~vd~hVhlrepg~ 20 (142)
T PF12890_consen 1 GKLILPGLVDVHVHLREPGF 20 (142)
T ss_pred Cceeehhhhhhhhhhhcccc
Confidence 68999999999999987764
|
|
| >KOG2902 consensus Dihydroorotase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=91.33 E-value=10 Score=35.93 Aligned_cols=82 Identities=12% Similarity=0.194 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHCCCeEEEEecch--------HHHHHHHHHHHHHHHhcCCCCCCceEeeccCCChhh-HHHHhhCCcEE
Q 008063 366 ESLLSMTMASDKSGLQVAIHAIGD--------RANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLASGT-AARFGDQGIVA 436 (579)
Q Consensus 366 ~~l~~~~~~a~~~g~~i~iH~~g~--------~~~~~~~~~~~~~~~~~~~~~~~~~i~H~~~~~~~~-~~~~~~~~i~~ 436 (579)
....-++++..+.|+++-+|-.-+ .+....+..+.++..+. ...+..++||+..+.-. ++-..+..+..
T Consensus 117 ~~fyPvf~aMqe~nm~LnvHGEvpps~D~~Vf~aE~~Flptll~Lhqrf--P~LKivlEHcTt~dAv~~ve~a~~~sVaa 194 (344)
T KOG2902|consen 117 GKFYPVFEAMQEQNMPLNVHGEVPPSIDGHVFDAEKIFLPTLLQLHQRF--PQLKIVLEHCTTMDAVNFVESAKEGSVAA 194 (344)
T ss_pred hhhhHHHHHHHHcCceEEecCCCCCccCCceecchhhhHHHHHHHHHhC--ccceeHHHhcccHHHHHHHHhhcCCceee
Confidence 345566777788999999986522 22334445555544443 35678889998877533 33355555666
Q ss_pred EecccccccchhH
Q 008063 437 SMQPQHLLDDADS 449 (579)
Q Consensus 437 ~~~p~~~~~~~~~ 449 (579)
.+++++.....+.
T Consensus 195 TvTahHL~Lt~~d 207 (344)
T KOG2902|consen 195 TVTAHHLLLTRND 207 (344)
T ss_pred EeehheeEEehhh
Confidence 7778877644433
|
|
| >PTZ00310 AMP deaminase; Provisional | Back alignment and domain information |
|---|
Probab=90.74 E-value=1.1 Score=52.85 Aligned_cols=135 Identities=14% Similarity=0.030 Sum_probs=86.0
Q ss_pred HHHHHHHHHHCCCeE---EEEecchHHHHHHHHHHHHHHHhcCCCCCCceEeeccCCC-hhhHHHH-hhCCcEEEecccc
Q 008063 368 LLSMTMASDKSGLQV---AIHAIGDRANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLA-SGTAARF-GDQGIVASMQPQH 442 (579)
Q Consensus 368 l~~~~~~a~~~g~~i---~iH~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~H~~~~~-~~~~~~~-~~~~i~~~~~p~~ 442 (579)
+..+=..-++.|+.. -.||...+.++..+..+-. ...|.|+..+. +..+..+ ...+|.+.+||.+
T Consensus 465 l~~LN~lR~~RGlNTf~LRPhcgeag~~dhLv~~fLl----------adRI~HGi~l~d~p~LqyL~~e~qI~LeVCPlS 534 (1453)
T PTZ00310 465 LAVLNSLRKRKGLNTLQLRPSGEKAPAYDQLISSYLL----------GDVITRATSIADYPVLQYLCGLHRVGLTVSPLR 534 (1453)
T ss_pred HHHHHHHHHhCCCCeEEecCCCCCCCCHHHHHHHHHh----------hccccchhccCchHHHHHHHHHcCCeEEECCCc
Confidence 333333334556543 3565545556655544322 33788887654 3444444 4899999999999
Q ss_pred cccchhHHHHhhChhhhhhhhhhHHHHHHCCCeeeecCCCCCCC-C---CHHHHHHHHHcccCCCCCCCCCCCCCCCHHH
Q 008063 443 LLDDADSARKKLGVDRAERESYLFQSLLANNALLALGSDWPVAD-I---NPLCAIRTAMKRIPPGWDNAWIPSERISLTD 518 (579)
Q Consensus 443 ~~~~~~~~~~~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~ 518 (579)
+....- .. -...|++.+++.|+++++.||.|... . .+.++...+.. ..+++..+
T Consensus 535 N~~l~v-----~s-----y~~HPi~~fl~~GL~VSLNTDDPl~F~tt~EpL~EEY~iaaq------------~~gLS~~D 592 (1453)
T PTZ00310 535 DHALSI-----TA-----YFDHPLPKFLHRCLRVSISTSDPLYFHHHSQPLIEEYATAMK------------LFSLSPLD 592 (1453)
T ss_pred ccccCC-----Cc-----hhhCcHHHHHHCCCEEEECCCCccccCCCCccHHHHHHHHHH------------HhCcCHHH
Confidence 974331 01 33458999999999999999988653 2 24555544442 34589988
Q ss_pred HHHHHcHHHHHhcccCC
Q 008063 519 ALIAHTLSAARACFLEN 535 (579)
Q Consensus 519 al~~~T~npA~~lgl~~ 535 (579)
..+++ .|+...-++++
T Consensus 593 L~eLa-rNSV~aSf~~~ 608 (1453)
T PTZ00310 593 TTELA-RNSVLNSSFPP 608 (1453)
T ss_pred HHHHH-HHHHHHhCCCH
Confidence 77765 78888877764
|
|
| >COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.19 E-value=4.1 Score=40.71 Aligned_cols=140 Identities=15% Similarity=0.046 Sum_probs=77.6
Q ss_pred CHHHHHHHHHHHHHCCCeEEEEecchHH---HHH---HHHHHHHHHHhcCCCCCCceEeecc--CCChhhHHHH--hhCC
Q 008063 364 ELESLLSMTMASDKSGLQVAIHAIGDRA---NDL---VLDMYKSVVVTTGKRDQRFRIEHAQ--HLASGTAARF--GDQG 433 (579)
Q Consensus 364 ~~~~l~~~~~~a~~~g~~i~iH~~g~~~---~~~---~~~~~~~~~~~~~~~~~~~~i~H~~--~~~~~~~~~~--~~~~ 433 (579)
+++.+..+.+.|.++|+++.+|.-.... ... .--.+..+..+. ...+..+.|+. +.-..+...+ ...+
T Consensus 142 ~~~~~~pi~~~a~~~gvpv~ihtG~~~~~~~~~~~~~~p~~~~~va~~f--P~l~IVl~H~G~~~p~~~~a~~~a~~~~n 219 (293)
T COG2159 142 DDPRLYPIYEAAEELGVPVVIHTGAGPGGAGLEKGHSDPLYLDDVARKF--PELKIVLGHMGEDYPWELEAIELAYAHPN 219 (293)
T ss_pred CChHHHHHHHHHHHcCCCEEEEeCCCCCCcccccCCCCchHHHHHHHHC--CCCcEEEEecCCCCchhHHHHHHHHhCCC
Confidence 3455899999999999999999752211 010 000122233333 35688899996 3332222222 2234
Q ss_pred cEEEecccccccchhHHHHhhChhhhhhhhhhHHHHHHCCC-eeeecCCCCCCCCCHHHHHHHHHcccCCCCCCCCCCCC
Q 008063 434 IVASMQPQHLLDDADSARKKLGVDRAERESYLFQSLLANNA-LLALGSDWPVADINPLCAIRTAMKRIPPGWDNAWIPSE 512 (579)
Q Consensus 434 i~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~~Gi-~v~~gsD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 512 (579)
+.+.+.-.... +.. + .-+..+.+.+- ++.+|||.|...+..+-... ...
T Consensus 220 vy~d~s~~~~~--------~~~-----~--~~~~~~~~~~~dkilFGSD~P~~~~~~~l~~~---------------~~l 269 (293)
T COG2159 220 VYLDTSGVRPK--------YFA-----P--PLLEFLKELGPDKILFGSDYPAIHPEVWLAEL---------------DEL 269 (293)
T ss_pred ceeeeeccccc--------cCC-----h--HHHHHHHhcccCeEEecCCCCCcCHHHHHHHH---------------Hhc
Confidence 44443322110 000 0 12345555232 79999998766554332222 223
Q ss_pred CCCHHHHHHHHcHHHHHhcccCC
Q 008063 513 RISLTDALIAHTLSAARACFLEN 535 (579)
Q Consensus 513 ~ls~~~al~~~T~npA~~lgl~~ 535 (579)
+++.+.--...-.|+++.+|++.
T Consensus 270 ~l~~e~k~kiL~~NA~rll~l~~ 292 (293)
T COG2159 270 GLSEEVKEKILGENAARLLGLDP 292 (293)
T ss_pred CCCHHHHHHHHHHhHHHHhCcCC
Confidence 47887778888889999999864
|
|
| >PF04909 Amidohydro_2: Amidohydrolase; InterPro: IPR006992 These proteins are related to the metal-dependent hydrolase superfamily [] | Back alignment and domain information |
|---|
Probab=86.60 E-value=1.6 Score=42.64 Aligned_cols=142 Identities=15% Similarity=0.021 Sum_probs=73.9
Q ss_pred HHHHHHHHHCCCeEEEEec--ch---HHHHHHHHHHHHHHHhcCCCCCCceEeeccCC--Ch-hhHHHHhhC-CcEEEec
Q 008063 369 LSMTMASDKSGLQVAIHAI--GD---RANDLVLDMYKSVVVTTGKRDQRFRIEHAQHL--AS-GTAARFGDQ-GIVASMQ 439 (579)
Q Consensus 369 ~~~~~~a~~~g~~i~iH~~--g~---~~~~~~~~~~~~~~~~~~~~~~~~~i~H~~~~--~~-~~~~~~~~~-~i~~~~~ 439 (579)
..+++.+.++|+++.+|+. +. .........+..+..+++ +.+..+.|+... .- +.+..+.+. ++.+.++
T Consensus 120 ~~~~~~~~~~~~pv~~H~g~~~~~~~~~~~~~~~~~~~~~~~~P--~l~ii~~H~G~~~~~~~~~~~l~~~~~nvy~d~s 197 (273)
T PF04909_consen 120 DPIFEAAEELGLPVLIHTGMTGFPDAPSDPADPEELEELLERFP--DLRIILAHLGGPFPWWEEALRLLDRFPNVYVDLS 197 (273)
T ss_dssp HHHHHHHHHHT-EEEEEESHTHHHHHHHHHHHHHHHTTHHHHST--TSEEEESGGGTTHHHHHHHHHHHHHHTTEEEECH
T ss_pred HHHHHHHHhhccceeeeccccchhhhhHHHHHHHHHHHHHHHhc--CCeEEEecCcccchhHHHHHHHHHhCCccccccc
Confidence 5899999999999999964 11 111122233344455554 578889999887 22 333333332 4555433
Q ss_pred ccccccchhHHHHhhChhhhhhhhhhHHHHHH-CCC-eeeecCCCCCCCCCHH-HHHHHHHcccCCCCCCCCCCCCCCCH
Q 008063 440 PQHLLDDADSARKKLGVDRAERESYLFQSLLA-NNA-LLALGSDWPVADINPL-CAIRTAMKRIPPGWDNAWIPSERISL 516 (579)
Q Consensus 440 p~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~-~Gi-~v~~gsD~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ls~ 516 (579)
-....... .... .....+..+.+ .|. ++++|||.|....... .......... .++.
T Consensus 198 ~~~~~~~~------~~~~---~~~~~l~~~~~~~g~drilfGSD~P~~~~~~~~~~~~~~~~~~------------~l~~ 256 (273)
T PF04909_consen 198 GIPPFWYF------WPPS---FDRPFLRRAVDEFGPDRILFGSDYPHPDGASPYEYIWEAYFLD------------DLSE 256 (273)
T ss_dssp SHHSSEEE------ETTH---HCHHHHHHHHHHHTGGGEEEE--TTSSTHHHHHHHHHHHHHHH------------HSSH
T ss_pred cccccccc------Cccc---ccHHHHHHHHHHhCCceEEecCCCCCCCccccHHHHHHhhhcc------------CCCH
Confidence 21000000 0000 11122334433 344 7999999987754222 2222111100 0588
Q ss_pred HHHHHHHcHHHHHhccc
Q 008063 517 TDALIAHTLSAARACFL 533 (579)
Q Consensus 517 ~~al~~~T~npA~~lgl 533 (579)
++.=+....|+++++|+
T Consensus 257 ~~~~~i~~~NA~rl~~l 273 (273)
T PF04909_consen 257 EEREKILYDNARRLYGL 273 (273)
T ss_dssp HHHHHHHTHHHHHHHTC
T ss_pred HHHHHHHhHhHHHHcCc
Confidence 99889999999999875
|
The family includes 2-amino-3-carboxymuconate-6-semialdehyde decarboxylase which converts alpha-amino-beta-carboxymuconate-epsilon- semialdehyde (ACMS) to alpha-aminomuconate semialdehyde (AMS). ACMS can be converted non-enzymatically to quinolate, a potent endogenous excitoxin of neuronal cells which is implicated in the pathogenesis of various neurodegenerative disorders. In the presence of AMCSD, ACMS is converted to AMS, a benign catabolite. |
| >PRK06740 histidinol-phosphatase; Validated | Back alignment and domain information |
|---|
Probab=85.44 E-value=35 Score=34.73 Aligned_cols=51 Identities=14% Similarity=0.119 Sum_probs=31.7
Q ss_pred hhHHHHhhCCcEEEecccccccchhHHHHhhChhhhhhhhhhHHHHHHCCCeeeecCCC
Q 008063 424 GTAARFGDQGIVASMQPQHLLDDADSARKKLGVDRAERESYLFQSLLANNALLALGSDW 482 (579)
Q Consensus 424 ~~~~~~~~~~i~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD~ 482 (579)
+.++.+++.|+.+.++..+...... ...++ ...-++.+.+.|+++++|||+
T Consensus 243 ~I~~a~~~~g~~lEINt~~~~r~~~--~e~yP------~~~il~~~~e~Gv~~tlgSDA 293 (331)
T PRK06740 243 EIARALVETNTATEINAGLYYRYPV--REMCP------SPLFLQVLAKHEVPITLSSDA 293 (331)
T ss_pred HHHHHHHHcCCEEEEECccccCCCC--CCCCc------CHHHHHHHHHCCCeEEEeeCC
Confidence 4456678889988888753221000 00111 112367888899999999997
|
|
| >PRK00912 ribonuclease P protein component 3; Provisional | Back alignment and domain information |
|---|
Probab=81.36 E-value=28 Score=33.48 Aligned_cols=116 Identities=10% Similarity=-0.017 Sum_probs=68.1
Q ss_pred CceEeeccC------CChhhHHHHhhCCcEEEecccccccch-hHHHHhhChhhhhhhhhhHHHHHHCCCeeeecCCCCC
Q 008063 412 RFRIEHAQH------LASGTAARFGDQGIVASMQPQHLLDDA-DSARKKLGVDRAERESYLFQSLLANNALLALGSDWPV 484 (579)
Q Consensus 412 ~~~i~H~~~------~~~~~~~~~~~~~i~~~~~p~~~~~~~-~~~~~~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD~~~ 484 (579)
...+.|... .....++..++.|+.+.++-....... ......+. .....++...+.|+++.++||...
T Consensus 104 vdIi~hp~~~~~~~~~~~~~~~~a~~~gv~lEIn~s~~~~~~~~~r~~~~~-----~~~~~~~~~~~~g~piiisSdAh~ 178 (237)
T PRK00912 104 VDILSHPYTKRKDSGINHVLAKEAARNNVAIEFNLRDILKSRGGRRARTLS-----NFRDNLALARKYDFPLVLTSGAMS 178 (237)
T ss_pred CcEEeCccccCCCCCcCHHHHHHHHHCCeEEEEEchHhhhhcccHHHHHHH-----HHHHHHHHHHhcCCCEEEeCCCCc
Confidence 456667643 345667788889998887755432100 00000000 111235666678999999999643
Q ss_pred CC-CCHHHHHHHHHcccCCCCCCCCCCCCCCCHHHHHHHHcHHHHHhcccC-CccccccCCC
Q 008063 485 AD-INPLCAIRTAMKRIPPGWDNAWIPSERISLTDALIAHTLSAARACFLE-NDVGSLSPGK 544 (579)
Q Consensus 485 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~npA~~lgl~-~~~G~I~~G~ 544 (579)
.. ...+....... ...|++.++++++.+.+|.+.+... .+.+.|..|.
T Consensus 179 ~~~l~~~~~~~~l~------------~~~Gl~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 228 (237)
T PRK00912 179 CYDLRSPREMIALA------------ELFGMEEDEALKALSYYPESIIKKNRNRKNYVIEGV 228 (237)
T ss_pred ccccCCHHHHHHHH------------HHcCCCHHHHHHHHHHhHHHHHHhhccCCCcccccE
Confidence 32 22222222222 2356999999999999999998764 2344555553
|
|
| >KOG3020 consensus TatD-related DNase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=80.85 E-value=36 Score=33.76 Aligned_cols=71 Identities=14% Similarity=0.148 Sum_probs=51.8
Q ss_pred HHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhcCCCCCCceEeeccCCChhhHHHHhhCCcEEEecccccc
Q 008063 368 LLSMTMASDKSGLQVAIHAIGDRANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLASGTAARFGDQGIVASMQPQHLL 444 (579)
Q Consensus 368 l~~~~~~a~~~g~~i~iH~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~H~~~~~~~~~~~~~~~~i~~~~~p~~~~ 444 (579)
+++-+++|.+...|+.+|+.. +.+..++..++..... .+-.+.|+...+.+++.++.+.++.+..++.+..
T Consensus 137 FekQl~LA~~~~~Pl~iH~r~--a~~d~~eIl~~~~~~~----~~~vvvHsFtGs~e~~~~~lk~~~yig~~g~~~k 207 (296)
T KOG3020|consen 137 FEKQLDLAKRLKLPLFIHCRS--AHEDLLEILKRFLPEC----HKKVVVHSFTGSAEEAQKLLKLGLYIGFTGCSLK 207 (296)
T ss_pred HHHHHHHHHHccCCeeeechh--hhHHHHHHHHHhcccc----CCceEEEeccCCHHHHHHHHHccEEecccceeee
Confidence 577799999999999999953 3344444444432221 1258999999999999999999977777666553
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 579 | ||||
| 3igh_X | 486 | Crystal Structure Of An Uncharacterized Metal-Depen | 4e-33 | ||
| 3icj_A | 534 | Crystal Structure Of An Uncharacterized Metal-Depen | 2e-29 | ||
| 2fty_A | 559 | Crystal Structure Of Dihydropyrimidinase From Sacch | 1e-04 | ||
| 3ggm_A | 81 | Crystal Structure Of Bt9727_2919 From Bacillus Thur | 4e-04 | ||
| 2aqo_A | 390 | Crystal Structure Of E. Coli Isoaspartyl Dipeptidas | 8e-04 |
| >pdb|3IGH|X Chain X, Crystal Structure Of An Uncharacterized Metal-Dependent Hydrolase From Pyrococcus Horikoshii Ot3 Length = 486 | Back alignment and structure |
|
| >pdb|3ICJ|A Chain A, Crystal Structure Of An Uncharacterized Metal-Dependent Hydrolase From Pyrococcus Furiosus Length = 534 | Back alignment and structure |
|
| >pdb|2FTY|A Chain A, Crystal Structure Of Dihydropyrimidinase From Saccharomyces Kluyveri Length = 559 | Back alignment and structure |
|
| >pdb|3GGM|A Chain A, Crystal Structure Of Bt9727_2919 From Bacillus Thuringiensis Subsp. Northeast Structural Genomics Target Bur228b Length = 81 | Back alignment and structure |
|
| >pdb|2AQO|A Chain A, Crystal Structure Of E. Coli Isoaspartyl Dipeptidase Mutant E77q Length = 390 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3icj_A Uncharacterized metal-dependent hydrolase; structural genomics, amidohydrolase, PSI-2, protein structur initiative; HET: KCX; 1.95A {Pyrococcus furiosus} PDB: 3etk_A* 3igh_X* Length = 534 | Back alignment and structure |
|---|
Score = 521 bits (1344), Expect = 0.0
Identities = 144/569 (25%), Positives = 241/569 (42%), Gaps = 54/569 (9%)
Query: 14 ALSIFSFPLLNNFYLLKLTPATTTTTTTNLEADLVVTNGVIFTGDDSLLFADSMAIKNGR 73
+L I +F N+ L + + NG I+T + + I N R
Sbjct: 5 SLPISNFFTFNHQSTLFTKVKNFMGVKHIGDCMKALINGTIYTSFSPVKKVSGLVISNER 64
Query: 74 IVSVGNYSAVQQLAA-DGTNVLNLQGKVVVPGFIDSHVHFIPGGLQMARVKLRGVSHKDE 132
++ G+ S ++A G +++L+GK V+P F DSH+H G+ + V LRGV +E
Sbjct: 65 VLYAGDSSTALRIAELAGGEIIDLKGKFVMPAFFDSHLHLDELGMSLEMVDLRGVKSMEE 124
Query: 133 FVRRVKEAVKNSKKGSWILGGGWNNDLWGGDLPMASWIDDITPHNPVWLSRMDGHMGLAN 192
V RVK+ +G I G GW+ D G P +D PV+L R H+ + N
Sbjct: 125 LVERVKKG-----RGRIIFGFGWDQDELGR-WPTREDLDV--IDRPVFLYRRCFHVAVMN 176
Query: 193 SVALQLVGITNLSEDPNGGTIMKTSSGEPTGLLIDAAMKLILPWIPE--VSVDERREALL 250
S + L+ + + E TG++ + A++ I E ++V + + +
Sbjct: 177 SKMIDLLNLKPSKDFD-----------ESTGIVRERALEESRKIINEKILTVKDYKHYIE 225
Query: 251 RASNLALSRGVTTVVDFGRYYPGESVQLSWEDFADVYQWASYSEKMKIRVCLFFPLETWS 310
A LS GV +V + + ++K+ V + E
Sbjct: 226 SAQEHLLSLGVHSVGFMS---------VGEKAL-KALFELEREGRLKMNVFAYLSPELLD 275
Query: 311 SLADLINKTGHVLSDWVYLGGVKAFADGSLGSNSALFHEPYADEPHNYGLQVMELESLLS 370
L +L G + + GVK F DGSLG+ +AL EPY D P G VM + ++
Sbjct: 276 KLEEL--NLGKFEGRRLRIWGVKLFVDGSLGARTALLSEPYTDNPTTSGELVMNKDEIVE 333
Query: 371 MTMASDKSGLQVAIHAIGDRANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLASGTAARFG 430
+ + GL VA+HAIGD+A D+ LD ++ + RIEHA + R
Sbjct: 334 VIERAKPLGLDVAVHAIGDKAVDVALDAFEEA-------EFSGRIEHASLVRDDQLERIK 386
Query: 431 DQGIVASMQPQHLLDDADSARKKLGVDRAERESYLFQSLLANNALLALGSDWPVADINPL 490
+ + S QP ++ D ++G +RA+ +Y ++ L++ L +D P+ +P
Sbjct: 387 ELKVRISAQPHFIVSDWW-IVNRVGEERAKW-AYRLKT-LSSITKLGFSTDSPIEPADPW 443
Query: 491 CAIRTAMKRIPPGWDNAWIPSERISLTDALIAHTLSAARACFLENDVGSLSPGKIADFVI 550
+I A+ R P ER+S +AL +T +A+ E D+G L G A+++I
Sbjct: 444 VSIDAAVNRYVVD------PGERVSREEALHLYTHGSAQVTLAE-DLGKLERGFRAEYII 496
Query: 551 LSTSSWEDFAAEVSASIEATYVSGVQAYP 579
L ++ T +
Sbjct: 497 LDRDPLKEMKG---IITITTDPNSSSVDK 522
|
| >3ggm_A Uncharacterized protein BT9727_2919; bacillus cereus group., structural genomics, PSI-2, protein structure initiative; 2.00A {Bacillus thuringiensis serovarkonkukian} Length = 81 | Back alignment and structure |
|---|
Score = 106 bits (268), Expect = 3e-28
Identities = 25/76 (32%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Query: 45 ADLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPG 104
D+++ NG I T D S ++AI +G I +VG + A + T ++L+ K +PG
Sbjct: 4 PDMILYNGKITTLDPSQPEVSAIAITDGLITAVGG-DELLNSATEKTKKIDLKRKRAIPG 62
Query: 105 FIDSHVHFIPGGLQMA 120
DSH+H I G
Sbjct: 63 LNDSHIHVIRGLEHHH 78
|
| >2vun_A Enamidase; nicotinate degradation, binuclear metal center, amidohydrolases, stereospecificity, hydrolase; 1.89A {Eubacterium barkeri} Length = 386 | Back alignment and structure |
|---|
Score = 73.1 bits (179), Expect = 4e-14
Identities = 21/76 (27%), Positives = 40/76 (52%), Gaps = 5/76 (6%)
Query: 45 ADLVVTN-GVIFTGD--DSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVV 101
+ ++ N G I +GD +L AD++ +++G I ++G ++ A +++ G V
Sbjct: 2 SKTIIKNIGKIVSGDIKSPVLQADTIVVEDGLIAAIGGEELMK--DAGDATIIDAAGSTV 59
Query: 102 VPGFIDSHVHFIPGGL 117
PG +D+HVH G
Sbjct: 60 TPGLLDTHVHVSGGDY 75
|
| >2vun_A Enamidase; nicotinate degradation, binuclear metal center, amidohydrolases, stereospecificity, hydrolase; 1.89A {Eubacterium barkeri} Length = 386 | Back alignment and structure |
|---|
Score = 43.4 bits (102), Expect = 1e-04
Identities = 29/228 (12%), Positives = 54/228 (23%), Gaps = 38/228 (16%)
Query: 362 VMELESLLSMTMASDKSGLQVAIHAIGDRANDLVLDMYKSVVVTTGKRDQRFRIEHAQHL 421
+ E M + K G +V +H G + S VT I+ +
Sbjct: 170 IKNPEDAAPMVEWAHKHGFKVQMHTGG-------TSIPGSSTVTADDV-----IKTKPDV 217
Query: 422 ASGTAARFGDQGIVASMQPQHLLDDADSARKKLGVDRAERESYLFQSLLANNALLALGSD 481
S I + + + + + G
Sbjct: 218 VSH---------INGGPTAISVQEVDRIMDETDFAMEIVQCGNPKIADYVARRAAEKGQL 268
Query: 482 WPVADINPLCAIRTAMKRIPPGWDNAWIPSERI----SLTDALIAHTLSAARACFLENDV 537
V + + P + A+ T ++ +
Sbjct: 269 GRVIF----GNDAPSGTGLIPLGILRNMCQIASMSDIDPEVAVCMATGNSTAV--YGLNT 322
Query: 538 GSLSPGKIADFVILS-------TSSWEDFAAEVSASIEATYVSGVQAY 578
G ++PGK AD +I+ + AA I + G
Sbjct: 323 GVIAPGKEADLIIMDTPLGSVAEDAMGAIAAGDIPGISVVLIDGEAVV 370
|
| >2puz_A Imidazolonepropionase; NYSGXRC, PSI-2, N-formimino-L- glutamate, product-bound, structural genomics, protein STRU initiative; HET: NIG; 1.83A {Agrobacterium tumefaciens str} SCOP: b.92.1.10 c.1.9.17 PDB: 2gok_A Length = 419 | Back alignment and structure |
|---|
Score = 73.0 bits (179), Expect = 5e-14
Identities = 27/132 (20%), Positives = 48/132 (36%), Gaps = 19/132 (14%)
Query: 31 LTPATTTTTTTNLEADLVVTNGVIFTGDDSL----LFAD-SMAIKNGRIVSVGNYSAVQQ 85
+ + T A + N + T + ++ + +A++NGRI G S +
Sbjct: 1 MPGNNSAKGTATGNATALWRNAQLATLNPAMDGIGAVENAVIAVRNGRIAFAGPESDLPD 60
Query: 86 LAADGTNVLNLQGKVVVPGFIDSHVHFIPGGLQMARVKLRGVSHKDEFVRRVKEAVKNSK 145
+ + G+ + P ID H H + GG R EF R+ A +
Sbjct: 61 DLSTADETTDCGGRWITPALIDCHTHLVFGG-------NRA----MEFEMRLNGA---TY 106
Query: 146 KGSWILGGGWNN 157
+ GGG +
Sbjct: 107 EEIAKAGGGIVS 118
|
| >2puz_A Imidazolonepropionase; NYSGXRC, PSI-2, N-formimino-L- glutamate, product-bound, structural genomics, protein STRU initiative; HET: NIG; 1.83A {Agrobacterium tumefaciens str} SCOP: b.92.1.10 c.1.9.17 PDB: 2gok_A Length = 419 | Back alignment and structure |
|---|
Score = 70.3 bits (172), Expect = 5e-13
Identities = 63/346 (18%), Positives = 109/346 (31%), Gaps = 56/346 (16%)
Query: 239 EVSVDERREALLRASNLALSRGVTTVVDFGRY---YPGESVQLSWEDFADVYQWASYSEK 295
+S + L + LS GV+T+ Y E L +
Sbjct: 125 ALSDEVLVAQALPRLDTLLSEGVSTIEIKSGYGLDIETELKML--RVARRLETLRPVRIV 182
Query: 296 MKIRVCLFFPLETWSSLADLINKTGHVLSDWVYLGGVKAFADGSLGSNSALFHEPYADEP 355
P + AD I V+ + + L F E A
Sbjct: 183 TSYLAAHATPADYKGRNADYIT---DVVLPGL-----EKAHAEGLADAVDGFCEGIA--- 231
Query: 356 HNYGLQVMELESLLSMTMASDKSGLQVAIHAIGDRANDLVLDMYKSVVVTTGKRDQRFRI 415
++ + + A+ + GL V +HA ++ ++L
Sbjct: 232 -------FSVKEIDRVFAAAQQRGLPVKLHA--EQLSNLGGAEL-------AASYNALSA 275
Query: 416 EHAQHLASGTAARFGDQGIVASMQPQHLLDDADSARKKLGVDRAERESYLFQSLLANNAL 475
+H ++L A G VA + P + + Q+L A
Sbjct: 276 DHLEYLDETGAKALAKAGTVAVLLPGAFYALREKQLPPV------------QALRDAGAE 323
Query: 476 LALGSDW-PVADINPLCAIRTAMKRIPPGWDNAWIPSERISLTDALIAHTLSAARACFLE 534
+AL +D P +PL ++ M N R+++ + L A T +AA+A L
Sbjct: 324 IALATDCNPGT--SPLTSLLLTM--------NMGATLFRMTVEECLTATTRNAAKALGLL 373
Query: 535 NDVGSLSPGKIADFVILSTSSWEDFAAEVSAS-IEATYVSGVQAYP 579
+ G+L GK ADF I + + + + A G + P
Sbjct: 374 AETGTLEAGKSADFAIWDIERPAELVYRIGFNPLHARIFKGQKVSP 419
|
| >3nqb_A Adenine deaminase 2; PSI-II, structural genomics, protein structure initiative, N SGX research center for structural genomics, nysgxrc; 2.21A {Agrobacterium tumefaciens} PDB: 3t81_A 3t8l_A Length = 608 | Back alignment and structure |
|---|
Score = 70.4 bits (172), Expect = 6e-13
Identities = 18/69 (26%), Positives = 29/69 (42%), Gaps = 4/69 (5%)
Query: 44 EADLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVP 103
D+++T G + L + I I SV ++ D V++ G V P
Sbjct: 34 RFDVLITGGTLVDVVTGELRPADIGIVGALIASVHEPAS----RRDAAQVIDAGGAYVSP 89
Query: 104 GFIDSHVHF 112
G ID+H+H
Sbjct: 90 GLIDTHMHI 98
|
| >2bb0_A Imidazolonepropionase; TIM barrel, hydrolase; 2.00A {Bacillus subtilis} SCOP: b.92.1.10 c.1.9.17 PDB: 2g3f_A Length = 421 | Back alignment and structure |
|---|
Score = 68.2 bits (167), Expect = 2e-12
Identities = 51/348 (14%), Positives = 103/348 (29%), Gaps = 63/348 (18%)
Query: 239 EVSVDERREALLRASNLALSRGVTTVVD---FGRYYPGESVQLSWEDFADVYQWASYSEK 295
S +E + LS G TT +G E QL V + S+
Sbjct: 121 AASEEELLQKAHFHLQRMLSYGTTTAEVKSGYGLEKETELKQLR------VAKKLHESQP 174
Query: 296 MKIRV----CLFFPLETWSSLADLINKTGHVLSDWVYLGGVKAFADGSLGSNSALFHEPY 351
+ + P E + D +++ +L + + L S + +F E
Sbjct: 175 VDLVSTFMGAHAIPPEYQNDPDDFLDQMLSLLPEI---------KEQELASFADIFTETG 225
Query: 352 ADEPHNYGLQVMELESLLSMTMASDKSGLQVAIHAIGDRANDLVLDMYKSVVVTTGKRDQ 411
+ + ++G + IHA D + + +
Sbjct: 226 V----------FTVSQSRRYLQKAAEAGFGLKIHA--DEIDP-------LGGAELAGKLK 266
Query: 412 RFRIEHAQHLASGTAARFGDQGIVASMQPQHLLDDADSARKKLGVDRAERESYLFQSLLA 471
+H + + + G +A + P S RA ++
Sbjct: 267 AVSADHLVGTSDEGIKKLAEAGTIAVLLPGTTFYLGKS-----TYARARA-------MID 314
Query: 472 NNALLALGSDWPVADINPLCAIRTAMKRIPPGWDNAWIPSERISLTDALIAHTLSAARAC 531
++L +D+ +P I+ M + +++ + A T++AA A
Sbjct: 315 EGVCVSLATDF-NPGSSPTENIQLIM--------SIAALHLKMTAEEIWHAVTVNAAYAI 365
Query: 532 FLENDVGSLSPGKIADFVILSTSSWEDFAAEVSAS-IEATYVSGVQAY 578
+ G L G+ AD VI ++ + + +G
Sbjct: 366 GKGEEAGQLKAGRSADLVIWQAPNYMYIPYHYGVNHVHQVMKNGTIVV 413
|
| >2bb0_A Imidazolonepropionase; TIM barrel, hydrolase; 2.00A {Bacillus subtilis} SCOP: b.92.1.10 c.1.9.17 PDB: 2g3f_A Length = 421 | Back alignment and structure |
|---|
Score = 59.0 bits (143), Expect = 2e-09
Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 10/71 (14%)
Query: 66 SMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHFIPGGLQMARV--- 122
+ I +IV G A AD +++ G++V PG +D H H + GG R
Sbjct: 39 VVGIHEQKIVFAGQKGAEAGYEAD--EIIDCSGRLVTPGLVDPHTHLVFGGS---REKEM 93
Query: 123 --KLRGVSHKD 131
KL+G+S+ D
Sbjct: 94 NLKLQGISYLD 104
|
| >2gwn_A Dihydroorotase; zinc-binding prote structural genomics, PSI, protein structure initiative, MID center for structural genomics, MCSG; HET: KCX GOL; 1.85A {Porphyromonas gingivalis} Length = 452 | Back alignment and structure |
|---|
Score = 66.8 bits (164), Expect = 6e-12
Identities = 13/67 (19%), Positives = 22/67 (32%), Gaps = 2/67 (2%)
Query: 46 DLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGF 105
+++ N +I + + I I + V+ G + PG
Sbjct: 5 KILLRNALITN-EGKTFPGS-VMIDGAFISRIIEGELPADDNLSADEVIECSGLRLFPGC 62
Query: 106 IDSHVHF 112
ID VHF
Sbjct: 63 IDDQVHF 69
|
| >2vr2_A Dihydropyrimidinase; hydantoinase, metal-binding, disease mutation, dihydropyrimi amidohydrolase, nucleotide metabolism, DPYS, dhpase, hydrolase; 2.80A {Homo sapiens} Length = 541 | Back alignment and structure |
|---|
Score = 67.0 bits (164), Expect = 7e-12
Identities = 23/91 (25%), Positives = 40/91 (43%), Gaps = 12/91 (13%)
Query: 44 EADLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVP 103
+ L++ G + D S + +++G + ++G+ A G VL+ GK+V+P
Sbjct: 26 PSRLLIRGGRVVNDDFS--EVADVLVEDGVVRALGHDLLPPGGAPAGLRVLDAAGKLVLP 83
Query: 104 GFIDSHVHF-IPGGLQMARVKLRGVSHKDEF 133
G ID+H H P G D+F
Sbjct: 84 GGIDTHTHMQFPFM---------GSRSIDDF 105
|
| >2q09_A Imidazolonepropionase; 9252H, NYSGXRC, 3-(2, 5-dioxo-imidazo 4YL)-propionic acid, PSI-2 community, structural genomics, structure initiative; HET: DI6; 1.97A {Unidentified} SCOP: b.92.1.10 c.1.9.17 PDB: 2oof_A* Length = 416 | Back alignment and structure |
|---|
Score = 66.4 bits (162), Expect = 9e-12
Identities = 52/347 (14%), Positives = 101/347 (29%), Gaps = 68/347 (19%)
Query: 239 EVSVDERREALLRASNLALSRGVTTVVDFGRYYPGESVQLSWEDFADVYQWASYSEKMKI 298
S D+ E L + GVTTV G +++ + +
Sbjct: 113 AASEDQLFELALPRVKSLIREGVTTVEIK--SGYGLTLEDELKMLRVARRLGEALPIRVK 170
Query: 299 RVCLF---FPLETWSSLADLINKTGHVLSDWVYLGGVKAFADGSLGSNSALFHEPYADEP 355
L P E + + G+ D +F E
Sbjct: 171 TTLLAAHAVPPEYRDDPDSWVETICQEIIPAAAEAGLADAVD--------VFCEHIG--- 219
Query: 356 HNYGLQVMELESLLSMTMASDKSGLQVAIHAIGDRANDLVLDMYKSVVVTTGKRDQRFRI 415
L + +A+D+ GL V H D+ ++L +
Sbjct: 220 -------FSLAQTEQVYLAADQYGLAVKGHM--DQLSNLGGSTL-------AANFGALSV 263
Query: 416 EHAQHLASGTAARFGDQGIVASMQPQHLLDDADS----ARKKLGVDRAERESYLFQSLLA 471
+H ++L +G+VA++ P ++ L
Sbjct: 264 DHLEYLDPEGIQALAHRGVVATLLPTAFYFLKETKLPPVVA----------------LRK 307
Query: 472 NNALLALGSDW---PVADINPLCAIRTAMKRIPPGWDNAWIPSERISLTDALIAHTLSAA 528
+A+ SD ++ A+ A ++ +A+ T AA
Sbjct: 308 AGVPMAVSSDINPGTAPIVSLRMAMNMACTL------------FGLTPVEAMAGVTRHAA 355
Query: 529 RACFLENDVGSLSPGKIADFVILSTSSWEDFAAEVSAS-IEATYVSG 574
RA + +G L G +ADF++ + + + + + + V+G
Sbjct: 356 RALGEQEQLGQLRVGMLADFLVWNCGHPAELSYLIGVDQLVSRVVNG 402
|
| >2q09_A Imidazolonepropionase; 9252H, NYSGXRC, 3-(2, 5-dioxo-imidazo 4YL)-propionic acid, PSI-2 community, structural genomics, structure initiative; HET: DI6; 1.97A {Unidentified} SCOP: b.92.1.10 c.1.9.17 PDB: 2oof_A* Length = 416 | Back alignment and structure |
|---|
Score = 64.1 bits (156), Expect = 4e-11
Identities = 28/117 (23%), Positives = 47/117 (40%), Gaps = 20/117 (17%)
Query: 42 NLEADLVVTNGVIFTGDDSL----LFAD-SMAIKNGRIVSVGNYSAVQQLAADGTNVLNL 96
+L + V N T L L ++ + GRI ++ ++ + ++
Sbjct: 2 SLNCERVWLNVTPATLRSDLADYGLLEPHALGVHEGRIHALVPMQDLKGPYPA--HWQDM 59
Query: 97 QGKVVVPGFIDSHVHFIPGGLQMARVKLRGVSHKDEFVRRVKEA--VKNSKKGSWIL 151
+GK+V PG ID H H I G S +EF R K + ++KG I+
Sbjct: 60 KGKLVTPGLIDCHTHLIFAG-----------SRAEEFELRQKGVPYAEIARKGGGII 105
|
| >1nfg_A D-hydantoinase; TIM barrel, hydrolase; HET: KCX; 2.70A {Ralstonia pickettii} SCOP: b.92.1.3 c.1.9.6 Length = 457 | Back alignment and structure |
|---|
Score = 65.6 bits (161), Expect = 1e-11
Identities = 21/89 (23%), Positives = 31/89 (34%), Gaps = 18/89 (20%)
Query: 46 DLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGF 105
D+++ NG I T D + IK+G+I +G ++ G+ V PG
Sbjct: 2 DIIIKNGTIVTADGI--SRADLGIKDGKITQIG------GALGPAERTIDAAGRYVFPGG 53
Query: 106 IDSHVHF-IPGGLQMARVKLRGVSHKDEF 133
ID H H D F
Sbjct: 54 IDVHTHVETVSF---------NTQSADTF 73
|
| >3hm7_A Allantoinase; metallo-dependent hydrolase, protein structure initiative, PSI-2, NEW YORK structural genomix research CON nysgxrc; 2.60A {Bacillus halodurans} Length = 448 | Back alignment and structure |
|---|
Score = 65.7 bits (161), Expect = 1e-11
Identities = 16/67 (23%), Positives = 33/67 (49%), Gaps = 5/67 (7%)
Query: 46 DLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGF 105
DL++ + + T + +AI+NG + ++ +++D ++ G + PG
Sbjct: 7 DLIIRSSTVVTETT--TYRADVAIRNGIVSAITEPG---SISSDDGPAIDGTGLHLFPGM 61
Query: 106 IDSHVHF 112
+D HVHF
Sbjct: 62 VDVHVHF 68
|
| >2fty_A Dihydropyrimidinase; alpha/beta barrel, beta-sandwich, hydrolase; HET: KCX; 2.40A {Lachancea kluyveri} SCOP: b.92.1.3 c.1.9.6 PDB: 2fvk_A* 2fvm_A* Length = 559 | Back alignment and structure |
|---|
Score = 66.0 bits (161), Expect = 2e-11
Identities = 24/89 (26%), Positives = 40/89 (44%), Gaps = 15/89 (16%)
Query: 46 DLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGF 105
DL++ NG+I T D A+ +A+ NG++ + + G+ V++ +G + PG
Sbjct: 4 DLIIKNGIICTASDIYA-AE-IAVNNGKVQLIAASID----PSLGSEVIDAEGAFITPGG 57
Query: 106 IDSHVHF-IPGGLQMARVKLRGVSHKDEF 133
ID+HVH P L D
Sbjct: 58 IDAHVHVDEPLKL--------LGDVVDTM 78
|
| >1gkr_A Hydantoinase, non-ATP dependent L-selective hydantoinase; hydrolase, dihydropyrimidinase, cyclic amidase; HET: KCX; 2.60A {Arthrobacter aurescens} SCOP: b.92.1.3 c.1.9.6 Length = 458 | Back alignment and structure |
|---|
Score = 65.7 bits (161), Expect = 2e-11
Identities = 18/72 (25%), Positives = 37/72 (51%), Gaps = 7/72 (9%)
Query: 46 DLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGF 105
D++V N + + D AD + +K+G++ ++ ++ + + ++ GK V+PG
Sbjct: 3 DVIVKNCRLVSSDGITE-AD-ILVKDGKVAAISADTS----DVEASRTIDAGGKFVMPGV 56
Query: 106 IDSHVHFI-PGG 116
+D HVH I
Sbjct: 57 VDEHVHIIDMDL 68
|
| >3sfw_A Dihydropyrimidinase; hydrolase, zinc binding; HET: KCX; 1.73A {Brevibacillus agri} PDB: 1yny_A 1k1d_A* Length = 461 | Back alignment and structure |
|---|
Score = 65.3 bits (160), Expect = 2e-11
Identities = 24/89 (26%), Positives = 37/89 (41%), Gaps = 17/89 (19%)
Query: 46 DLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGF 105
+ NG + T D+ AD + I ++V++G L A V++ G ++PG
Sbjct: 2 KKWIRNGTVVTASDTYQ-AD-VLIDGEKVVAIG-----SDLQATDAEVIDATGYYLLPGG 54
Query: 106 IDSHVHF-IPGGLQMARVKLRGVSHKDEF 133
ID H H +P G G D F
Sbjct: 55 IDPHTHLDMPFG---------GTVTSDNF 74
|
| >3dc8_A Dihydropyrimidinase; TIM-barrel, hydrolase; HET: KCX; 1.85A {Sinorhizobium meliloti} Length = 490 | Back alignment and structure |
|---|
Score = 65.3 bits (160), Expect = 2e-11
Identities = 23/88 (26%), Positives = 34/88 (38%), Gaps = 17/88 (19%)
Query: 46 DLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGF 105
V+ G I T D + + + ++ GRIV +G G L+ G V+PG
Sbjct: 2 STVIKGGTIVTADLT--YKADVKVEGGRIVEIGP-------NLSGAETLDATGCYVMPGG 52
Query: 106 IDSHVHFIPGGLQMARVKLRGVSHKDEF 133
ID H H + G D+F
Sbjct: 53 IDPHTHL--------EMPFMGTYSSDDF 72
|
| >3be7_A Zn-dependent arginine carboxypeptidase; unknown source, amidohydrolase, sargasso SEA, structural GEN protein structure initiative, PSI; HET: ARG; 2.30A {Unidentified} SCOP: b.92.1.9 c.1.9.18 PDB: 3dug_A* Length = 408 | Back alignment and structure |
|---|
Score = 64.3 bits (157), Expect = 3e-11
Identities = 14/68 (20%), Positives = 31/68 (45%), Gaps = 6/68 (8%)
Query: 45 ADLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPG 104
D ++ + + + I+NG+I +G ++ V+++ +++PG
Sbjct: 6 EDFLIKSKGYLDIQTGEIIKADLLIRNGKIAEIG------KINTKDATVISIPDLILIPG 59
Query: 105 FIDSHVHF 112
+DSHVH
Sbjct: 60 LMDSHVHI 67
|
| >3be7_A Zn-dependent arginine carboxypeptidase; unknown source, amidohydrolase, sargasso SEA, structural GEN protein structure initiative, PSI; HET: ARG; 2.30A {Unidentified} SCOP: b.92.1.9 c.1.9.18 PDB: 3dug_A* Length = 408 | Back alignment and structure |
|---|
Score = 46.9 bits (112), Expect = 1e-05
Identities = 44/239 (18%), Positives = 84/239 (35%), Gaps = 66/239 (27%)
Query: 332 VKAFADGSLGSNSALFHEPYADEPHNYGLQVMELESLLSMTMASDKSGLQVAIHAIGDRA 391
+K A G + S + + + LE + ++ + G++VA HA G
Sbjct: 183 IKFCATGGVMSR--------NTDVNA---KQFTLEEMKAIVDEAHNHGMKVAAHAHGLIG 231
Query: 392 NDLVLDMYKSVV--VTTGKRDQRFRIEHAQHLASGTAARFGDQGIVASMQP---QHLLDD 446
+ ++ V + +EHA + T V SM ++L +
Sbjct: 232 ------IKAAIKAGVDS--------VEHASFIDDETIDMAIKNNTVLSMDIFVSDYILGE 277
Query: 447 A-------DSARKKLGVDRAERESYLFQSLLANNALLALGSDWPVADINPLCAIRTAMKR 499
+S K+ V + +RE+ F + A++ G+D +
Sbjct: 278 GAKAGIREESLNKERLVGKKQREN--FMNAHRRGAIITFGTDAGI--------------- 320
Query: 500 IPPGWDNAWIPSE-----RISLT--DALIAHTLSAARACFLENDVGSLSPGKIADFVIL 551
DNA + +T +A+ A T+ A +E ++G + G AD V +
Sbjct: 321 -FDHGDNA---KQFAYMVEWGMTPLEAIQASTIKTATLFGIE-NIGQIKEGFDADIVGV 374
|
| >3gip_A N-acyl-D-glutamate deacylase; amidohydrolase family, hydrolase; 1.50A {Bordetella bronchiseptica} PDB: 3giq_A* Length = 480 | Back alignment and structure |
|---|
Score = 64.2 bits (156), Expect = 5e-11
Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 5/66 (7%)
Query: 46 DLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGF 105
D +T G I G + + +++GRI ++G A + + GK+V PGF
Sbjct: 8 DFKITGGWIIDGTGAPRRRADLGVRDGRIAAIGELGA-----HPARHAWDASGKIVAPGF 62
Query: 106 IDSHVH 111
ID H H
Sbjct: 63 IDVHGH 68
|
| >1gkp_A Hydantoinase; hydrolase, dihydropyrimidinase, cyclic amidase; HET: KCX EPE; 1.29A {Thermus SP} SCOP: b.92.1.3 c.1.9.6 PDB: 1gkq_A* Length = 458 | Back alignment and structure |
|---|
Score = 63.7 bits (156), Expect = 7e-11
Identities = 28/88 (31%), Positives = 36/88 (40%), Gaps = 16/88 (18%)
Query: 47 LVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFI 106
L++ NG I T D AD + + I +G A GT V++ GK V PGFI
Sbjct: 2 LLIKNGEIITADSRYK-AD-IYAEGETITRIGQNLE----APPGTEVIDATGKYVFPGFI 55
Query: 107 DSHVHF-IPGGLQMARVKLRGVSHKDEF 133
D HVH +P KD
Sbjct: 56 DPHVHIYLPFM---------ATFAKDTH 74
|
| >3e74_A Allantoinase; (beta/alpha)8-barrel domain, small beta-sheet domain, hydrolase, metal-binding, purine metabolism, zinc; HET: KCX; 2.10A {Escherichia coli} Length = 473 | Back alignment and structure |
|---|
Score = 63.4 bits (155), Expect = 7e-11
Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 8/67 (11%)
Query: 46 DLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGF 105
DL++ NG + ++ +A+K G+I ++G Q D V++ G VV PG
Sbjct: 24 DLIIKNGTVILENE--ARVVDIAVKGGKIAAIG------QDLGDAKEVMDASGLVVSPGM 75
Query: 106 IDSHVHF 112
+D+H H
Sbjct: 76 VDAHTHI 82
|
| >2qs8_A XAA-Pro dipeptidase; amidohydrolase, TIM barrel, protein structure initiative, PSI-2, NYSGXRC, structural genomics; 2.33A {Alteromonas macleodii} SCOP: b.92.1.9 c.1.9.18 Length = 418 | Back alignment and structure |
|---|
Score = 62.8 bits (153), Expect = 1e-10
Identities = 15/73 (20%), Positives = 33/73 (45%), Gaps = 4/73 (5%)
Query: 41 TNLEADLVVTNGVIFTGDDSLLFAD-SMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGK 99
++++ ++ G + G + + S+ I I + + D + ++L+
Sbjct: 3 LDVDSKTLIHAGKLIDGKSDQVQSRISIVIDGNIISDIKKGFIS---SNDFEDYIDLRDH 59
Query: 100 VVVPGFIDSHVHF 112
V+PG +D HVHF
Sbjct: 60 TVLPGLMDMHVHF 72
|
| >2qs8_A XAA-Pro dipeptidase; amidohydrolase, TIM barrel, protein structure initiative, PSI-2, NYSGXRC, structural genomics; 2.33A {Alteromonas macleodii} SCOP: b.92.1.9 c.1.9.18 Length = 418 | Back alignment and structure |
|---|
Score = 51.6 bits (124), Expect = 4e-07
Identities = 39/240 (16%), Positives = 69/240 (28%), Gaps = 66/240 (27%)
Query: 332 VKAFADGSLGSNSALFHEPYADEPHNYGLQVMELESLLSMTMASDKSGLQVAIHAIGDRA 391
+K G + S A N E + ++ A+ G+ VA+HA G
Sbjct: 193 IKITVTGGVLSV--------AKSGQN---PQFTQEEVDAVVSAAKDYGMWVAVHAHGAEG 241
Query: 392 NDLVLDMYKSVVVTTGKRDQRFRIEHAQHLASGTAARFGDQGI-----------VASMQP 440
+ V + IEH + + G VA
Sbjct: 242 MKRAIKAG----VDS--------IEHGTFMDLEAMDLMIENGTYYVPTISAGEFVAEKSK 289
Query: 441 QHLLDDADSARKKLGVDRAERESYLFQSLLANNALLALGSDWPVADINPLCAIRTAMKRI 500
K V ++ F+ +A G+D V
Sbjct: 290 IDNFFPEIVRPKAASVGPQISDT--FRKAYEKGVKIAFGTDAGV---------------- 331
Query: 501 PPGWDNA---------WIPSERISLTDALIAHTLSAARACFLENDVGSLSPGKIADFVIL 551
N +P+ A+ + T+ A+ +E+ +GS+ GK+AD + +
Sbjct: 332 QKHGTNWKEFVYMVENGMPAM-----KAIQSATMETAKLLRIEDKLGSIESGKLADLIAV 386
|
| >2ftw_A Dihydropyrimidine amidohydrolase; (beta-alpha)8-barrel, beta-sandwich; HET: KCX; 2.05A {Dictyostelium discoideum} SCOP: b.92.1.3 c.1.9.6 Length = 521 | Back alignment and structure |
|---|
Score = 63.1 bits (154), Expect = 1e-10
Identities = 20/88 (22%), Positives = 39/88 (44%), Gaps = 14/88 (15%)
Query: 46 DLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGF 105
+++ NG + D +D + ++NG I + +G V++ K+++PG
Sbjct: 9 TILIKNGTVVNDDRYFK-SD-VLVENGIIKEISKNIE----PKEGIKVVDATDKLLLPGG 62
Query: 106 IDSHVHFIPGGLQMARVKLRGVSHKDEF 133
ID+H HF ++ G D+F
Sbjct: 63 IDTHTHF--------QLPFMGTVSVDDF 82
|
| >4dyk_A Amidohydrolase; adenosine deaminase, nysgrc, structural GENO PSI-biology, NEW YORK structural genomics research consorti hydrolase; 2.00A {Pseudomonas aeruginosa} Length = 451 | Back alignment and structure |
|---|
Score = 62.2 bits (152), Expect = 2e-10
Identities = 15/76 (19%), Positives = 32/76 (42%), Gaps = 4/76 (5%)
Query: 39 TTTNLEADLVVTNGVIFTGDDS--LLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNL 96
DL++ I + + +L ++ I++G+I V + A + L
Sbjct: 2 PNVRNPFDLLLLPTWIVPVEPAGVVLRDHALGIRDGQIALVAPREQAMRHGAT--EIREL 59
Query: 97 QGKVVVPGFIDSHVHF 112
G ++ PG +++H H
Sbjct: 60 PGMLLAPGLVNAHGHS 75
|
| >2ogj_A Dihydroorotase; TIM barrel, binuclear zinc, imidazole complex, amido hydrola 9244B, structural genomics, PSI-2; HET: KCX; 2.62A {Agrobacterium tumefaciens} Length = 417 | Back alignment and structure |
|---|
Score = 62.0 bits (150), Expect = 2e-10
Identities = 21/88 (23%), Positives = 39/88 (44%), Gaps = 6/88 (6%)
Query: 31 LTPATTTTTTTNLEADLVVTNGVIFTGDDSLLF--ADSMAIKNGRIVSVGNYSAVQQLAA 88
++ + T L+A +++TN D + +G+I +VG+ A
Sbjct: 1 MSLTSGEQAKTPLQAPILLTNVKPVGFGKGASQSSTDILIGGDGKIAAVGSALQ----AP 56
Query: 89 DGTNVLNLQGKVVVPGFIDSHVHFIPGG 116
T ++ +G + PG++D HVH GG
Sbjct: 57 ADTQRIDAKGAFISPGWVDLHVHIWHGG 84
|
| >4dzh_A Amidohydrolase; adenosine deaminase, nysgrc, structural GENO YORK structural genomics research consortium; 1.55A {Xanthomonas campestris PV} Length = 472 | Back alignment and structure |
|---|
Score = 61.5 bits (150), Expect = 3e-10
Identities = 17/82 (20%), Positives = 35/82 (42%), Gaps = 5/82 (6%)
Query: 33 PATTTTTTTNLEADLVVTNGVIFTGDDS--LLFADSMAIKNGRIVSVGNYSAVQQLAADG 90
P T DL++ G + + +L ++A+ NG IV+V + + A
Sbjct: 4 PLMTNAPPEP--CDLLIEAGYVVPIEPHAVVLEDHAVAVSNGVIVAVLPTADARVRFAPA 61
Query: 91 TNVLNLQGKVVVPGFIDSHVHF 112
++ ++PG +++H H
Sbjct: 62 R-TVSRPDAALMPGLVNAHTHN 82
|
| >1rk6_A D-aminoacylase; TIM barrel, beta barrel, insertion, hydrolase; 1.43A {Alcaligenes faecalis} SCOP: b.92.1.6 b.92.1.6 c.1.9.11 PDB: 1rjp_A 1v51_A 1rjq_A 1rjr_A 1rk5_A 1v4y_A 1m7j_A Length = 496 | Back alignment and structure |
|---|
Score = 61.6 bits (149), Expect = 3e-10
Identities = 21/66 (31%), Positives = 36/66 (54%), Gaps = 5/66 (7%)
Query: 46 DLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGF 105
D +++ G + G ++ + ++ RI +VG+ SA + +++ GKVV PGF
Sbjct: 22 DYILSGGTVIDGTNAPGRLADVGVRGDRIAAVGDLSA-----SSARRRIDVAGKVVSPGF 76
Query: 106 IDSHVH 111
IDSH H
Sbjct: 77 IDSHTH 82
|
| >2r8c_A Putative amidohydrolase; unknown source, sargasso SEA, structural genomics, protein structure initiative, PSI; 2.31A {Unidentified} SCOP: b.92.1.9 c.1.9.18 PDB: 3mkv_A* Length = 426 | Back alignment and structure |
|---|
Score = 61.2 bits (149), Expect = 4e-10
Identities = 18/67 (26%), Positives = 34/67 (50%), Gaps = 5/67 (7%)
Query: 47 LVVTNGVIFTGDDSLLFAD-SMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGF 105
+ NG + D L + I++G I V + + + + +V++++GK ++PG
Sbjct: 6 FLFRNGALLDPDHPDLLQGFEILIEDGFIREVSD----KPIKSSNAHVIDVKGKTIMPGL 61
Query: 106 IDSHVHF 112
ID HVH
Sbjct: 62 IDLHVHV 68
|
| >2r8c_A Putative amidohydrolase; unknown source, sargasso SEA, structural genomics, protein structure initiative, PSI; 2.31A {Unidentified} SCOP: b.92.1.9 c.1.9.18 PDB: 3mkv_A* Length = 426 | Back alignment and structure |
|---|
Score = 55.4 bits (134), Expect = 3e-08
Identities = 37/245 (15%), Positives = 73/245 (29%), Gaps = 58/245 (23%)
Query: 332 VKAFADGSLGSNSALFHEPYADEPHNYGLQVMELESLLSMTMASDKSGLQVAIHAIGDRA 391
+K A G + S D + + ++ + G V HA A
Sbjct: 192 IKIMASGGVASP--------TDPVGV---FGYSEDEIRAIVAEAQGRGTYVLAHAYTPAA 240
Query: 392 NDLVLDMYKSVV--VTTGKRDQRFRIEHAQHLASGTAARFGDQGIVASMQP---QHLLDD 446
+ ++V V T IEH + TA + G L +
Sbjct: 241 ------IARAVRCGVRT--------IEHGNLIDDETARLVAEHGAYVVPTLVTYDALASE 286
Query: 447 AD-------SARKKLGVDRAERESYLFQSLLANNALLALGSDWPVADINPLCAIRTAMKR 499
+ S K V A S + + + G+D
Sbjct: 287 GEKYGLPPESIAKIADVHGAGLHS--IEIMKRAGVKMGFGTDLLG--------------- 329
Query: 500 IPPGWDNA---WIPSERISLTDALIAHTLSAARACFLENDVGSLSPGKIADFVILSTSSW 556
+ I +E +S + + + T+ +A +++ +G + PG AD +++ +
Sbjct: 330 -EAQRLQSDEFRILAEVLSPAEVIASATIVSAEVLGMQDKLGRIVPGAHADVLVVDGNPL 388
Query: 557 EDFAA 561
+
Sbjct: 389 KSVDC 393
|
| >3ooq_A Amidohydrolase; structural genomics, protein structure INI NEW YORK structural genomix research consortium, NYSGXRC, H PSI-2; 2.06A {Thermotoga maritima} Length = 396 | Back alignment and structure |
|---|
Score = 60.8 bits (147), Expect = 4e-10
Identities = 16/66 (24%), Positives = 31/66 (46%), Gaps = 6/66 (9%)
Query: 46 DLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGF 105
++ N +F D + + NG++ VG + + +++L GK + PGF
Sbjct: 6 KILFKNATVFPITSRPFKGDVL-VSNGKVEKVG-----ENIEDPDAEIVDLTGKFLFPGF 59
Query: 106 IDSHVH 111
+D+H H
Sbjct: 60 VDAHSH 65
|
| >3ooq_A Amidohydrolase; structural genomics, protein structure INI NEW YORK structural genomix research consortium, NYSGXRC, H PSI-2; 2.06A {Thermotoga maritima} Length = 396 | Back alignment and structure |
|---|
Score = 53.5 bits (128), Expect = 9e-08
Identities = 40/184 (21%), Positives = 70/184 (38%), Gaps = 30/184 (16%)
Query: 397 DMYKSVVVTTGKRDQRFRIEHAQHLASGTAARFGDQGIVASMQPQHLLDDADSARKKLGV 456
D + + + IEH A + ++ I + P + R K +
Sbjct: 231 DDILTAIRIAEEFGFNLVIEHGTE-AYKISKVLAEKKIPVVVGP------LLTFRTK--L 281
Query: 457 DRAERESYLFQSLLANNALLALGSDWPVADI--NPLCAIRTAMKRIPPGWDNAWIPSERI 514
+ + LL + L+AL D PV + + A TAM+
Sbjct: 282 ELKDLTMETIAKLLKDGVLIALMCDHPVIPLEFATVQA-ATAMRYG-------------A 327
Query: 515 SLTDALIAHTLSAARACFLENDVGSLSPGKIADFVILSTSSWEDFAAEVSASIEATYVSG 574
D L T++ A+ LE+ +GS+ PGK AD V+ W ++ + +E Y+ G
Sbjct: 328 KEEDLLKILTVNPAKILGLEDRIGSIEPGKDADLVV-----WSGHPFDMKSVVERVYIDG 382
Query: 575 VQAY 578
V+ +
Sbjct: 383 VEVF 386
|
| >1onw_A Isoaspartyl dipeptidase; amidohydrolase, hydrolase, metalloprotease; HET: KCX; 1.65A {Escherichia coli} SCOP: b.92.1.7 c.1.9.13 PDB: 1onx_A* 1po9_A* 1poj_A* 1pok_B* 2aqo_A* 1ybq_A* 2aqv_A* Length = 390 | Back alignment and structure |
|---|
Score = 60.5 bits (147), Expect = 5e-10
Identities = 19/72 (26%), Positives = 36/72 (50%), Gaps = 4/72 (5%)
Query: 48 VVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFID 107
++ ++ +D + + NG+I++V + V++L G+++ PGFID
Sbjct: 11 LLQGAHLYAPED--RGICDVLVANGKIIAVASNIPSD--IVPNCTVVDLSGQILCPGFID 66
Query: 108 SHVHFIPGGLQM 119
HVH I GG +
Sbjct: 67 QHVHLIGGGGEA 78
|
| >4f0r_A 5-methylthioadenosine/S-adenosylhomocysteine DEAM; structural genomics, PSI-biology; HET: MSE MTA; 1.80A {Chromobacterium violaceum} PDB: 4f0s_A* Length = 447 | Back alignment and structure |
|---|
Score = 61.0 bits (149), Expect = 5e-10
Identities = 19/70 (27%), Positives = 35/70 (50%), Gaps = 4/70 (5%)
Query: 45 ADLVVTNGVIFT--GDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVV 102
+ +++ I T D +L ++AI++G+I ++ + L AD L L V++
Sbjct: 6 YEKIISARWIITVETDGEVLENHAIAIRDGKIAAIIPAADAAGLEAD--ERLELPDHVLM 63
Query: 103 PGFIDSHVHF 112
PG I+ H H
Sbjct: 64 PGLINLHGHS 73
|
| >2vm8_A Dihydropyrimidinase-related protein 2; neurogenesis, phosphoprotein, differentiation, CRMP, cytoplasm, TIM barrel, polymorphism, axonal pathfinding; 1.9A {Homo sapiens} PDB: 2gse_A 1kcx_A Length = 501 | Back alignment and structure |
|---|
Score = 60.7 bits (148), Expect = 6e-10
Identities = 20/90 (22%), Positives = 37/90 (41%), Gaps = 14/90 (15%)
Query: 44 EADLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVP 103
L++ G I D S F + +++G I +G G + ++V+P
Sbjct: 25 SDRLLIKGGKIVNDDQS--FYADIYMEDGLIKQIGENLI----VPGGVKTIEAHSRMVIP 78
Query: 104 GFIDSHVHFIPGGLQMARVKLRGVSHKDEF 133
G ID H F ++ +G++ D+F
Sbjct: 79 GGIDVHTRF--------QMPDQGMTSADDF 100
|
| >3lnp_A Amidohydrolase family protein OLEI01672_1_465; TIM barrel, beta-fold, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Oleispira antarctica} Length = 468 | Back alignment and structure |
|---|
Score = 60.3 bits (147), Expect = 7e-10
Identities = 18/89 (20%), Positives = 40/89 (44%), Gaps = 11/89 (12%)
Query: 32 TPATTTTTTTNLEADLVVTNGVIFTGDDSLLFAD--------SMAIKNGRIVSVGNYSAV 83
+ + ADL + + I +++ + IK+G I+++ S+
Sbjct: 10 SNLAQRQSQPKAHADLRINSHWIIPIENTTDHNLVSNILIDHCLLIKDGIILAIEPQSSC 69
Query: 84 QQLAADGTNVLNLQGKVVVPGFIDSHVHF 112
Q A + L+L +V++PG++++H H
Sbjct: 70 QIPATE---TLDLGQQVLMPGWVNAHGHA 95
|
| >3lnp_A Amidohydrolase family protein OLEI01672_1_465; TIM barrel, beta-fold, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Oleispira antarctica} Length = 468 | Back alignment and structure |
|---|
Score = 41.5 bits (98), Expect = 7e-04
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 5/54 (9%)
Query: 504 WDNAWIPSERISLTDALIAHTLSAARACFLENDVGSLSPGKIADFVILSTSSWE 557
D + IP+ +AL TL ARA +++ GSL PGK AD + ++
Sbjct: 360 QDASAIPAI-----EALTMATLGGARALGIDDITGSLKPGKAADIQAIDLNTLS 408
|
| >3feq_A Putative amidohydrolase; unknown source, sargasso SEA, structural genomics, protein structure initiative, PSI; 2.63A {Unidentified} PDB: 3lwy_A* 3n2c_A* Length = 423 | Back alignment and structure |
|---|
Score = 60.1 bits (146), Expect = 8e-10
Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 5/66 (7%)
Query: 48 VVTNGVIFTGDDSLLFAD-SMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFI 106
V+ G + + +L + I RIV V + ++++GK V+PGFI
Sbjct: 7 VLQGGNVLDLERGVLLEHHHVVIDGERIVEVTDRPVD----LPNAQAIDVRGKTVMPGFI 62
Query: 107 DSHVHF 112
D HVH
Sbjct: 63 DCHVHV 68
|
| >3feq_A Putative amidohydrolase; unknown source, sargasso SEA, structural genomics, protein structure initiative, PSI; 2.63A {Unidentified} PDB: 3lwy_A* 3n2c_A* Length = 423 | Back alignment and structure |
|---|
Score = 53.1 bits (128), Expect = 1e-07
Identities = 45/245 (18%), Positives = 75/245 (30%), Gaps = 58/245 (23%)
Query: 332 VKAFADGSLGSNSALFHEPYADEPHNYGLQVMELESLLSMTMASDKSGLQVAIHAIGDRA 391
+K A G + S D N + + ++ ++ + V HA RA
Sbjct: 189 IKIMASGGVASP--------TDPIAN---TQYSEDEIRAIVDEAEAANTYVMAHAYTGRA 237
Query: 392 NDLVLDMYKSVV--VTTGKRDQRFRIEHAQHLASGTAARFGDQGIVASMQP---QHLLDD 446
+ ++V V T IEH + A + G L
Sbjct: 238 ------IARAVRCGVRT--------IEHGNLVDEAAAKLMHEHGAFVVPTLVTYDALAKH 283
Query: 447 A-------DSARKKLGVDRAERESYLFQSLLANNALLALGSDWPVADINPLCAIRTAMKR 499
+S K V + RES + + GSD
Sbjct: 284 GAEFGMPPESVAKVASVQQKGRES--LEIYANAGVKMGFGSDLLG--------------- 326
Query: 500 IPPGWDNA---WIPSERISLTDALIAHTLSAARACFLENDVGSLSPGKIADFVILSTSSW 556
+ I +E + +AL + T AA ++ +G ++ G IAD V+L +
Sbjct: 327 -EMHAFQSGEFRIRAEVLGNLEALRSATTVAAEIVNMQGQLGVIAVGAIADLVVLDGNPL 385
Query: 557 EDFAA 561
ED
Sbjct: 386 EDIGV 390
|
| >2ics_A Adenine deaminase; TIM barrel, binuclear zinc, adenine complex, amidohydrolase, structural genomics, PSI, protein structure initiative; HET: KCX ADE; 2.30A {Enterococcus faecalis} SCOP: b.92.1.8 c.1.9.14 Length = 379 | Back alignment and structure |
|---|
Score = 59.4 bits (143), Expect = 1e-09
Identities = 18/72 (25%), Positives = 29/72 (40%), Gaps = 9/72 (12%)
Query: 44 EADLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVP 103
+ DL++ NG G + +AIK +I +V + + + G V
Sbjct: 4 DYDLLIKNGQTVNGMP----VE-IAIKEKKIAAVAATIS----GSAKETIHLEPGTYVSA 54
Query: 104 GFIDSHVHFIPG 115
G+ID HVH
Sbjct: 55 GWIDDHVHCFEK 66
|
| >2ics_A Adenine deaminase; TIM barrel, binuclear zinc, adenine complex, amidohydrolase, structural genomics, PSI, protein structure initiative; HET: KCX ADE; 2.30A {Enterococcus faecalis} SCOP: b.92.1.8 c.1.9.14 Length = 379 | Back alignment and structure |
|---|
Score = 41.7 bits (97), Expect = 5e-04
Identities = 49/338 (14%), Positives = 101/338 (29%), Gaps = 44/338 (13%)
Query: 218 SGEPTGLLIDAAMKLILP-WI-PEVSVDERREAL-LRASNLALSRGVTTVVDFGRYYPGE 274
SG + + WI V E+ + + +GVTTV+D G
Sbjct: 37 SGSAKETIHLEPGTYVSAGWIDDHVHCFEKMALYYDYPDEIGVKKGVTTVID-----AGT 91
Query: 275 SVQLSWEDFADVYQWASYSEKMKIRVCLFFPLETWSSLADLINKTGHVLSDWVYLGGVKA 334
+ + +F D+ Q A + + + + + LADL ++ ++
Sbjct: 92 TGAENIHEFYDLAQQAKTNVFGLVNIS-KWGIVAQDELADLSKVQASLVKK-----AIQE 145
Query: 335 FADGSLGSNSALFHEPYADEPHNYGLQVMELESLLSMTMASDKSGLQVAIHAIGDRAN-D 393
D +G + + + G+ +EL + + + + +H + D
Sbjct: 146 LPDFVVGIKARMSR----TVIGDNGITPLELA----KQIQQENQEIPLMVHIGSAPPHLD 197
Query: 394 LVLDMYKSVVVTTGKRDQRFRIEHAQHLASGTAARFGDQGIVASMQPQHLLDDADSARKK 453
+L + + G + + D A + +
Sbjct: 198 EILALMEK-----GDVLTHCFNGKENGILDQATDKIKDFAWQAYNKGVVFDIGHGTDSFN 252
Query: 454 LGVDRAERESYLFQSLLANNALLALGSDWPVADINPLCAIRTAMKRIPPGWDNAWIPSER 513
V + + ++ + + + PV D+ T K G+
Sbjct: 253 FHVAETALREGMKAASISTDIYIRNRENGPVYDLA-----TTMEKLRVVGY--------- 298
Query: 514 ISLTDALIAHTLSAARACFLENDVGSLSPGKIADFVIL 551
+ + T + A L G+L GK AD I
Sbjct: 299 -DWPEIIEKVTKAPAENFHLT-QKGTLEIGKDADLTIF 334
|
| >2imr_A Hypothetical protein DR_0824; zinc, NYSGXRC, PSI2, structural genomics, protein structure initiative; 1.78A {Deinococcus radiodurans} SCOP: b.92.1.11 c.1.9.16 Length = 420 | Back alignment and structure |
|---|
Score = 59.0 bits (143), Expect = 2e-09
Identities = 12/84 (14%), Positives = 30/84 (35%), Gaps = 2/84 (2%)
Query: 28 LLKLTPATTTTTTTNLEADLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLA 87
+ T T + ++T V++TG + + + + G+ +++
Sbjct: 20 MTFSEATTPDALTPDAHTPRLLTCDVLYTGMGGAQSPGGVVVVGETVAAAGHPDELRRQY 79
Query: 88 ADGTNVLNLQGKVVVPGFIDSHVH 111
G V+ P +++H H
Sbjct: 80 PH--AAEERAGAVIAPPPVNAHTH 101
|
| >2p9b_A Possible prolidase; protein structure initiative II, PSI-2, amidohydrolase, structural genomics; 1.70A {Bifidobacterium longum NCC2705} SCOP: b.92.1.10 c.1.9.17 Length = 458 | Back alignment and structure |
|---|
Score = 59.0 bits (143), Expect = 2e-09
Identities = 19/81 (23%), Positives = 36/81 (44%), Gaps = 5/81 (6%)
Query: 35 TTTTTTTNLEADLVVTNGVIFTGDDSLLFADSMAI---KNGRIVSVGNYSAVQQLAADGT 91
+ + + + + I TGD + +M I +GRI V +++
Sbjct: 2 SLMLSHNPIVEPFALAHATIVTGDKAGTILRNMTIVVGADGRIEQVA--PSIETSIPAEY 59
Query: 92 NVLNLQGKVVVPGFIDSHVHF 112
+ L+ GK+V+PG I++H H
Sbjct: 60 HYLDGTGKIVMPGLINAHTHL 80
|
| >2p9b_A Possible prolidase; protein structure initiative II, PSI-2, amidohydrolase, structural genomics; 1.70A {Bifidobacterium longum NCC2705} SCOP: b.92.1.10 c.1.9.17 Length = 458 | Back alignment and structure |
|---|
Score = 50.2 bits (120), Expect = 1e-06
Identities = 41/247 (16%), Positives = 75/247 (30%), Gaps = 49/247 (19%)
Query: 332 VKAFADGSLGSNSALFHEPYADEPHNYGLQVMELESLLSMTMASDKSGLQVAIHAIGDRA 391
+K A G + E G M +E + ++ + + G+ V HA
Sbjct: 202 IKIAATGGVTDAQ---------EIGEAGSPQMSVEQMRAICDEAHQYGVIVGAHAQSPEG 252
Query: 392 NDLVLDMYKSVV--VTTGKRDQRFRIEHAQHLASGTAARFGDQGIVASMQP------QHL 443
+ +S++ V T IEH L F
Sbjct: 253 ------VRRSLLAGVDT--------IEHGSVLDDELIGMFRHNPNALRGYSALIPTLSAG 298
Query: 444 LDDADSARKKLGVDRAERESYL---------FQSLLANNALLALGSDWPVADINPLCAIR 494
L + G+ + E+ + ++ +G+D + + R
Sbjct: 299 LPLTLLGQDVTGITDIQLENSKNVVGGMVSGARQAHEAGLMIGVGTDTGMTFVPQYATWR 358
Query: 495 TAMKRIPPGWDNAWIPSERISLTDALIAHTLSAARACFLENDVGSLSPGKIADFVILSTS 554
+ A +AL A T A ++ + GSL GK AD ++L+ +
Sbjct: 359 ELELLV----AYAGFSPA-----EALHAATAVNASILGVDAETGSLEVGKSADLLVLNAN 409
Query: 555 SWEDFAA 561
+D A
Sbjct: 410 PLDDLRA 416
|
| >2qt3_A N-isopropylammelide isopropyl amidohydrolase; N-isopropylammelide isopropylaminohydrolase ATZC, structural genomics, NYSGXRC, target 9364B; 2.24A {Pseudomonas SP} Length = 403 | Back alignment and structure |
|---|
Score = 58.8 bits (142), Expect = 2e-09
Identities = 15/67 (22%), Positives = 30/67 (44%), Gaps = 9/67 (13%)
Query: 46 DLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGF 105
DL++ N + D + I RI+ + ++ + ++ +G +V PGF
Sbjct: 6 DLIIRNAYLSEKDSVY----DIGIVGDRIIKIEA-----KIEGTVKDEIDAKGNLVSPGF 56
Query: 106 IDSHVHF 112
+D+H H
Sbjct: 57 VDAHTHM 63
|
| >2qt3_A N-isopropylammelide isopropyl amidohydrolase; N-isopropylammelide isopropylaminohydrolase ATZC, structural genomics, NYSGXRC, target 9364B; 2.24A {Pseudomonas SP} Length = 403 | Back alignment and structure |
|---|
Score = 51.1 bits (122), Expect = 6e-07
Identities = 52/358 (14%), Positives = 105/358 (29%), Gaps = 60/358 (16%)
Query: 227 DAAMKLILPWIPEVSVDERREALLRASNLALSRGVTTVVDFGRYYPGESVQLSWEDFADV 286
DAA++ L + + +E + ++ +++ + G + + E +
Sbjct: 85 DAAIEDGLKYYKNATHEEIKRHVIEHAHMQVLHGTLYTRTHVDVDSV-AKTKAVEAVLEA 143
Query: 287 YQWASYSEKMKIRVCLFFPLETWSSL--ADLINKTGHVLSDWVYLGGVKAFADGSLGSNS 344
+ + + I+V F + L LI K+ + D V GG
Sbjct: 144 KE--ELKDLIDIQVVAFAQSGFFVDLESESLIRKSLDMGCDLV--GG------------- 186
Query: 345 ALFHEPYADEPHNYGLQVMELESLLSMTMASDKSGLQVAIHAIGDRANDLVLDMYKSVVV 404
+P E + SL + + + + H + + +
Sbjct: 187 ---VDPATRENN-------VEGSLDLCFKLAKEYDVDIDYHI--HDIGTVGVYSINRLAQ 234
Query: 405 TTGKRDQRFRI--EHAQHLASGTAARFGDQGIVASMQPQHLLDDADSARKKLGVDRAERE 462
T + + R+ HA A + + + + S + V +
Sbjct: 235 KTIENGYKGRVTTSHAWCFADAPSEWLDEAIPLYKDSGMKFVTCFSSTPPTMPVIK---- 290
Query: 463 SYLFQSLLANNALLALGSD------WPVADINPLCAIRTAMKRIPPGWDNAWIPSERISL 516
LL L SD P + + + +R L
Sbjct: 291 ------LLEAGINLGCASDNIRDFWVPFGNGDMVQGALIETQR---LELKTNRD-----L 336
Query: 517 TDALIAHTLSAARACFLENDVGSLSPGKIADFVILSTSSWEDFAAEVSASIEATYVSG 574
T AR +E + G + GK AD V+L++ S + + A +G
Sbjct: 337 GLIWKMITSEGARVLGIEKNYG-IEVGKKADLVVLNSLSPQWAIID-QAKRLCVIKNG 392
|
| >1p1m_A Hypothetical protein TM0936; putative metal dependent hydrolase, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: b.92.1.4 c.1.9.9 PDB: 2plm_A* 1j6p_A Length = 406 | Back alignment and structure |
|---|
Score = 58.3 bits (142), Expect = 3e-09
Identities = 17/66 (25%), Positives = 29/66 (43%), Gaps = 8/66 (12%)
Query: 47 LVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFI 106
+++ N +I S F ++ I+NG I V L+L GK+V+P
Sbjct: 1 MIIGNCLILKDFSSEPFWGAVEIENGTIKRVLQGEVKV--------DLDLSGKLVMPALF 52
Query: 107 DSHVHF 112
++H H
Sbjct: 53 NTHTHA 58
|
| >2paj_A Putative cytosine/guanine deaminase; NYSGXRC, PSI-II, amidohydrolase, sargasso SEA, enviro sample, structural genomics; 2.70A {Unidentified} SCOP: b.92.1.4 c.1.9.9 Length = 492 | Back alignment and structure |
|---|
Score = 58.5 bits (142), Expect = 3e-09
Identities = 16/81 (19%), Positives = 31/81 (38%), Gaps = 8/81 (9%)
Query: 35 TTTTTTTNL---EADLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGT 91
TT T + A ++T G D S + + I I ++G G
Sbjct: 4 TTYDTQPSTLIRNAAAIMTGGRGTADDPSRVPGPDIRIVGDTIDAIG-----ALAPRPGE 58
Query: 92 NVLNLQGKVVVPGFIDSHVHF 112
+++ V+ P ++++H H
Sbjct: 59 TIVDATDCVIYPAWVNTHHHL 79
|
| >3iv8_A N-acetylglucosamine-6-phosphate deacetylase; IDP01334, fruct phosphate, carbohydrate metabolism, hydrolase; HET: F6P; 2.53A {Vibrio cholerae} PDB: 3egj_A* Length = 381 | Back alignment and structure |
|---|
Score = 56.4 bits (137), Expect = 1e-08
Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 5/64 (7%)
Query: 48 VVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFID 107
+TN I+TG+D +L ++ I +I +V ++ NV++L G + PGFID
Sbjct: 6 ALTNCKIYTGND-VLVKHAVIINGDKIEAVCPIESLP----SEMNVVDLNGANLSPGFID 60
Query: 108 SHVH 111
++
Sbjct: 61 LQLN 64
|
| >3iv8_A N-acetylglucosamine-6-phosphate deacetylase; IDP01334, fruct phosphate, carbohydrate metabolism, hydrolase; HET: F6P; 2.53A {Vibrio cholerae} PDB: 3egj_A* Length = 381 | Back alignment and structure |
|---|
Score = 48.0 bits (115), Expect = 5e-06
Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 10/61 (16%)
Query: 514 ISLTDALIAHTLSAARACFLENDVGSLSPGKIADFVILSTSSWEDFAAEVSASIEATYVS 573
I+L +AL TL A+A ++ +G + G IA+ + DF +++AT V+
Sbjct: 326 IALDEALRMATLYPAKAIGVDEKLGRIKKGMIANLTVFD----RDF------NVKATVVN 375
Query: 574 G 574
G
Sbjct: 376 G 376
|
| >3mpg_A Dihydroorotase, dhoase; hydrolase; 2.60A {Bacillus anthracis} Length = 428 | Back alignment and structure |
|---|
Score = 56.0 bits (136), Expect = 2e-08
Identities = 17/66 (25%), Positives = 34/66 (51%), Gaps = 6/66 (9%)
Query: 47 LVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFI 106
+ NG + ++ D + +++G+I V + + AD V+++ GK++ PG +
Sbjct: 3 YLFKNGRYMNEEGKIVATD-LLVQDGKIAKVA-----ENITADNAEVIDVNGKLIAPGLV 56
Query: 107 DSHVHF 112
D HVH
Sbjct: 57 DVHVHL 62
|
| >2vhl_A N-acetylglucosamine-6-phosphate deacetylase; N- acetyleglucosamine-6-phosphate, carbohydrate metabolism, hydrolase; HET: GLP PGE; 2.05A {Bacillus subtilis} Length = 396 | Back alignment and structure |
|---|
Score = 55.3 bits (134), Expect = 2e-08
Identities = 14/65 (21%), Positives = 29/65 (44%), Gaps = 4/65 (6%)
Query: 47 LVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFI 106
L++ + I T ++ ++ + I +G+I +V + V++PG I
Sbjct: 5 LLIKDIAIVTENE-VIKNGYVGINDGKISTVSTERP---KEPYSKEIQAPADSVLLPGMI 60
Query: 107 DSHVH 111
D H+H
Sbjct: 61 DIHIH 65
|
| >2vhl_A N-acetylglucosamine-6-phosphate deacetylase; N- acetyleglucosamine-6-phosphate, carbohydrate metabolism, hydrolase; HET: GLP PGE; 2.05A {Bacillus subtilis} Length = 396 | Back alignment and structure |
|---|
Score = 50.7 bits (122), Expect = 7e-07
Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 10/65 (15%)
Query: 514 ISLTDALIAHTLSAARACFLENDVGSLSPGKIADFVILSTSSWEDFAAEVSASIEATYVS 573
S TD + +AA+ + + GS++ GK AD VI+S D + T
Sbjct: 334 CSWTDIANITSENAAKQLGIFDRKGSVTVGKDADLVIVS----SDC------EVILTICR 383
Query: 574 GVQAY 578
G A+
Sbjct: 384 GNIAF 388
|
| >1ejx_C Urease alpha subunit; alpha-beta barrel, nickel metalloenzyme, temperature depende structural changes, hydrolase; HET: KCX; 1.60A {Klebsiella aerogenes} SCOP: b.92.1.1 c.1.9.2 PDB: 1ejw_C* 1fwj_C* 1kra_C 2kau_C* 1ef2_A* 1ejv_C* 1ejt_C* 1eju_C* 1ejs_C* 1ejr_C* 1krc_C 1krb_C* 1fwi_C* 1fwa_C* 1fwb_C* 1fwc_C* 1fwd_C* 1fwe_C* 1fwg_C* 1a5k_C ... Length = 567 | Back alignment and structure |
|---|
Score = 55.5 bits (133), Expect = 3e-08
Identities = 23/81 (28%), Positives = 37/81 (45%), Gaps = 8/81 (9%)
Query: 39 TTTNLEADLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGN------YSAVQQLAADGTN 92
DLV+TN +I + + +K+GRI ++G V T
Sbjct: 60 MLAADCVDLVLTNALIVDHWG--IVKADIGVKDGRIFAIGKAGNPDIQPNVTIPIGAATE 117
Query: 93 VLNLQGKVVVPGFIDSHVHFI 113
V+ +GK+V G ID+H+H+I
Sbjct: 118 VIAAEGKIVTAGGIDTHIHWI 138
|
| >1yrr_A N-acetylglucosamine-6-phosphate deacetylase; (beta/alpha)8 barrel, beta sandwich, hydrolase; 2.00A {Escherichia coli} SCOP: b.92.1.5 c.1.9.10 PDB: 1ymy_A 2p50_A 2p53_A* Length = 382 | Back alignment and structure |
|---|
Score = 54.9 bits (133), Expect = 3e-08
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 5/64 (7%)
Query: 48 VVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFID 107
+T G IFTG + L ++ I +G I SV + + +L G ++ PGFID
Sbjct: 3 ALTQGRIFTGHE-FLDDHAVVIADGLIKSVCPVAELP----PEIEQRSLNGAILSPGFID 57
Query: 108 SHVH 111
++
Sbjct: 58 VQLN 61
|
| >1yrr_A N-acetylglucosamine-6-phosphate deacetylase; (beta/alpha)8 barrel, beta sandwich, hydrolase; 2.00A {Escherichia coli} SCOP: b.92.1.5 c.1.9.10 PDB: 1ymy_A 2p50_A 2p53_A* Length = 382 | Back alignment and structure |
|---|
Score = 50.6 bits (122), Expect = 8e-07
Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 10/65 (15%)
Query: 514 ISLTDALIAHTLSAARACFLENDVGSLSPGKIADFVILSTSSWEDFAAEVSASIEATYVS 573
I+L + L TL ARA +E +G+L+ GK+A+ + DF I T V+
Sbjct: 326 IALDEVLRMATLYPARAIGVEKRLGTLAAGKVANLTAFT----PDF------KITKTIVN 375
Query: 574 GVQAY 578
G +
Sbjct: 376 GNEVV 380
|
| >4ubp_C Protein (urease (chain C)); bacillus pasteurii, nickel, acetohydroxamic acid, metalloenzyme, hydrolase; HET: KCX; 1.55A {Sporosarcina pasteurii} SCOP: b.92.1.1 c.1.9.2 PDB: 1s3t_C* 2ubp_C* 3ubp_C* 1ubp_C* 1ie7_C* Length = 570 | Back alignment and structure |
|---|
Score = 55.4 bits (133), Expect = 3e-08
Identities = 30/93 (32%), Positives = 46/93 (49%), Gaps = 11/93 (11%)
Query: 37 TTTTTNLEADLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVG--------NYSAVQQLAA 88
T T T DL++TN +I + AD + +K+G IV +G + +
Sbjct: 59 TYTRTENVLDLLLTNALILDYTG-IYKAD-IGVKDGYIVGIGKGGNPDIMDGVTPNMIVG 116
Query: 89 DGTNVLNLQGKVVVPGFIDSHVHFI-PGGLQMA 120
T V+ +GK+V G ID+HVHFI P + +A
Sbjct: 117 TATEVIAAEGKIVTAGGIDTHVHFINPDQVDVA 149
|
| >1e9y_B Urease subunit beta; hydrolase, dodecamer; HET: KCX; 3.00A {Helicobacter pylori} SCOP: b.92.1.1 c.1.9.2 PDB: 1e9z_B* 3qga_C* 3qgk_C* Length = 569 | Back alignment and structure |
|---|
Score = 55.0 bits (132), Expect = 4e-08
Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 10/83 (12%)
Query: 39 TTTNLEADLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVG--------NYSAVQQLAADG 90
+ E DL++TN +I + AD + IK+G+I +G +
Sbjct: 60 NPSKEELDLIITNALIVDYTG-IYKAD-IGIKDGKIAGIGKGGNKDMQDGVKNNLSVGPA 117
Query: 91 TNVLNLQGKVVVPGFIDSHVHFI 113
T L +G +V G ID+H+HFI
Sbjct: 118 TEALAGEGLIVTAGGIDTHIHFI 140
|
| >2ood_A BLR3880 protein; PSI-II, PSI-2, guanine deaminase, guanine, structural genomics, protein structure initiative; HET: GUN; 2.62A {Bradyrhizobium japonicum} SCOP: b.92.1.4 c.1.9.9 Length = 475 | Back alignment and structure |
|---|
Score = 54.7 bits (132), Expect = 4e-08
Identities = 13/46 (28%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 67 MAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHF 112
M + +G I + G Y + + +++ +++VPGFID H+H
Sbjct: 38 MVVTDGVIKAFGPYEKIAAAHPG-VEITHIKDRIIVPGFIDGHIHL 82
|
| >2ood_A BLR3880 protein; PSI-II, PSI-2, guanine deaminase, guanine, structural genomics, protein structure initiative; HET: GUN; 2.62A {Bradyrhizobium japonicum} SCOP: b.92.1.4 c.1.9.9 Length = 475 | Back alignment and structure |
|---|
Score = 51.2 bits (123), Expect = 6e-07
Identities = 21/96 (21%), Positives = 37/96 (38%), Gaps = 17/96 (17%)
Query: 477 ALGSDWPVA---DINPLCAIRTAMK------------RIPPGWDNAWIPSERISLTDALI 521
+ G+D V + + + A K P D A ++S
Sbjct: 322 SFGTD--VGGGNRFSMISVLDDAYKVGMCNNTLLDGSIDPSRKDLAEAERNKLSPYRGFW 379
Query: 522 AHTLSAARACFLENDVGSLSPGKIADFVILSTSSWE 557
+ TL A ++++ +G+ PGK ADFV L + +
Sbjct: 380 SVTLGGAEGLYIDDKLGNFEPGKEADFVALDPNGGQ 415
|
| >1xrt_A Dihydroorotase, dhoase; amidohydrolase, metalloenzyme, pyrimidine; 1.61A {Aquifex aeolicus} SCOP: b.92.1.3 c.1.9.6 PDB: 1xrf_A 3d6n_A* Length = 467 | Back alignment and structure |
|---|
Score = 54.5 bits (132), Expect = 5e-08
Identities = 18/66 (27%), Positives = 33/66 (50%), Gaps = 5/66 (7%)
Query: 47 LVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFI 106
L+V NG + +L + ++NG+I + + + +++ +G +V PGFI
Sbjct: 49 LIVKNGYVIDPSQNLEGEFDILVENGKIKKID-----KNILVPEAEIIDAKGLIVCPGFI 103
Query: 107 DSHVHF 112
D HVH
Sbjct: 104 DIHVHL 109
|
| >3gri_A Dihydroorotase, dhoase; hydrolase, IDP00795, metal-binding, pyrimidine biosynthesis, structural genomics; 2.00A {Staphylococcus aureus subsp} Length = 424 | Back alignment and structure |
|---|
Score = 53.7 bits (130), Expect = 9e-08
Identities = 15/66 (22%), Positives = 29/66 (43%), Gaps = 6/66 (9%)
Query: 47 LVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFI 106
++ NG + + L + I I + ++G ++++ +G V PGF+
Sbjct: 2 KLIKNGKVL--QNGELQQADILIDGKVIKQIAPAIE----PSNGVDIIDAKGHFVSPGFV 55
Query: 107 DSHVHF 112
D HVH
Sbjct: 56 DVHVHL 61
|
| >2z00_A Dihydroorotase; zinc binding protein, hydrolase, metal-binding, pyrimidine biosynthesis, structural genomics, NPPSFA; 2.42A {Thermus thermophilus} Length = 426 | Back alignment and structure |
|---|
Score = 51.8 bits (125), Expect = 4e-07
Identities = 16/66 (24%), Positives = 28/66 (42%), Gaps = 9/66 (13%)
Query: 47 LVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFI 106
+++ N + AD + I GRI+S+ + V++ G + PGF+
Sbjct: 2 ILIRNVRLVDARGERGPAD-VLIGEGRILSLE--------GGEAKQVVDGTGCFLAPGFL 52
Query: 107 DSHVHF 112
D H H
Sbjct: 53 DLHAHL 58
|
| >2i9u_A Cytosine/guanine deaminase related protein; protein structure initiative II (PSI-II), amidohydrol guanine deaminase; HET: GUN; 2.05A {Clostridium acetobutylicum} SCOP: b.92.1.4 c.1.9.9 Length = 439 | Back alignment and structure |
|---|
Score = 51.5 bits (124), Expect = 4e-07
Identities = 21/125 (16%), Positives = 41/125 (32%), Gaps = 20/125 (16%)
Query: 469 LLANNALLALGSDWPVA---DINPLCAIRTAMKRIPPGWDNAWIPSERISLTDALIAHTL 525
L + LGSD ++ + I A++ W + +S ++A T
Sbjct: 308 YLNLGINVVLGSD--ISAGHTCSLFKVIAYAIQNSKIKWQESGKKDMFLSTSEAFYMATK 365
Query: 526 SAARACFLENDVGSLSPGKIADFVILSTSSWEDFAAEV------------SASIEATYVS 573
VGS G D ++++ S+ ++ +I YV
Sbjct: 366 KGGSFF---GKVGSFEEGYDFDALVINDSNLYPEDYDLTERLERFIYLGDDRNIMKRYVC 422
Query: 574 GVQAY 578
G + +
Sbjct: 423 GNEIF 427
|
| >2i9u_A Cytosine/guanine deaminase related protein; protein structure initiative II (PSI-II), amidohydrol guanine deaminase; HET: GUN; 2.05A {Clostridium acetobutylicum} SCOP: b.92.1.4 c.1.9.9 Length = 439 | Back alignment and structure |
|---|
Score = 49.5 bits (119), Expect = 2e-06
Identities = 12/73 (16%), Positives = 28/73 (38%), Gaps = 16/73 (21%)
Query: 40 TTNLEADLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGK 99
T + ++ + I + +G+I SV + + G +++ +
Sbjct: 20 TKTSDKFTIMKDSYI-------------VVIDGKIASVSSNLPDK---YKGNPIIDFRNN 63
Query: 100 VVVPGFIDSHVHF 112
+++PG D H H
Sbjct: 64 IIIPGMNDLHAHA 76
|
| >4aql_A Guanine deaminase; hydrolase, purine metabolism; HET: TXC; 1.99A {Homo sapiens} PDB: 2uz9_A* 3e0l_A Length = 476 | Back alignment and structure |
|---|
Score = 50.8 bits (122), Expect = 7e-07
Identities = 26/133 (19%), Positives = 50/133 (37%), Gaps = 23/133 (17%)
Query: 469 LLANNALLALGSDW-PVADINPLCAIRTAMKRIPPGWDNAWIPSERISLTDALIAHTLSA 527
+L + + LG+D + L AIR A+ N + + ++L + TL
Sbjct: 340 VLKHEVKIGLGTDVAGGYSYSMLDAIRRAVMVSNILLINK-VNEKSLTLKEVFRLATLGG 398
Query: 528 ARACFLENDVGSLSPGKIADFVILSTSSWEDFAAEV---------------------SAS 566
++A L+ ++G+ GK D ++++ + + +
Sbjct: 399 SQALGLDGEIGNFEVGKEFDAILINPKASDSPIDLFYGDFFGDISEAVIQKFLYLGDDRN 458
Query: 567 IEATYVSGVQAYP 579
IE YV G Q P
Sbjct: 459 IEEVYVGGKQVVP 471
|
| >1ra0_A Cytosine deaminase; alpha-beta barrel, hexamer, conformation change, D314G mutant, hydrolase; 1.12A {Escherichia coli} SCOP: b.92.1.2 c.1.9.5 PDB: 1r9x_A 1ra5_A 1r9y_A 1r9z_A 1rak_A 3r0d_A* 3o7u_A* 3rn6_A* 1k6w_A 1k70_A 3g77_A Length = 430 | Back alignment and structure |
|---|
Score = 50.4 bits (120), Expect = 9e-07
Identities = 47/357 (13%), Positives = 107/357 (29%), Gaps = 50/357 (14%)
Query: 221 PTGLLIDAAMKLILPWIPEVSVDERREALLRASNLALSRGVTTVVDFGRYYPGESVQLSW 280
+G L + ++ ++ D+ ++ + ++ G+ V ++ +
Sbjct: 81 QSGTLFEG-IERWAERKALLTHDDVKQRAWQTLKWQIANGIQHVRTH--VDVSDATLTAL 137
Query: 281 EDFADVYQWASYSEKMKIRVCLFFPLETWSSLADLINKTGHVLSDWVYLGGVKAFADGSL 340
+ +V Q + + +++ F S +L + + LG
Sbjct: 138 KAMLEVKQ--EVAPWIDLQIVAFPQEGILSY-----PNGEALLEEALRLGAD-------- 182
Query: 341 GSNSALFHEPYADEPHNYGLQVMELESLLSMTMASDKSGLQVAIHAIGDRANDLVLDMYK 400
+ P+ + YG+ ESL + K + +H D +D +
Sbjct: 183 ----VVGAIPHFEFTREYGV-----ESLHKTFALAQKYDRLIDVHC--DEIDDEQSRFVE 231
Query: 401 SVVVTTGKRDQRFRI--EHAQHLASGTAARFGDQGIVASMQPQHLLDDADSARKKLGVDR 458
+V R+ H + S A + M + + + G
Sbjct: 232 TVAALAHHEGMGARVTASHTTAMHSYNGAYTSRLFRLLKMSGINFVANPLVNIHLQGRFD 291
Query: 459 AE---RESYLFQSLLANNALLALGSD------WPVADINPLCAIRTAMKRIPPGWDNAWI 509
R + +L + + G D +P+ N L + + +
Sbjct: 292 TYPKRRGITRVKEMLESGINVCFGHDGVFDPWYPLGTANMLQVLHMGLHV-------CQL 344
Query: 510 PSERISLTDALIAHTLSAARACFLENDVGSLSPGKIADFVILSTSSWEDFAAEVSAS 566
+ D L T +AR L++ ++ G A+ +IL + D
Sbjct: 345 MGYG-QINDGLNLITHHSARTLNLQD--YGIAAGNSANLIILPAENGFDALRRQVPV 398
|
| >1ra0_A Cytosine deaminase; alpha-beta barrel, hexamer, conformation change, D314G mutant, hydrolase; 1.12A {Escherichia coli} SCOP: b.92.1.2 c.1.9.5 PDB: 1r9x_A 1ra5_A 1r9y_A 1r9z_A 1rak_A 3r0d_A* 3o7u_A* 3rn6_A* 1k6w_A 1k70_A 3g77_A Length = 430 | Back alignment and structure |
|---|
Score = 49.2 bits (117), Expect = 2e-06
Identities = 10/45 (22%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
Query: 68 AIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHF 112
+++G+I ++ A + N L+ + +V+P F++ H+H
Sbjct: 27 HLQDGKISAID---AQSGVMPITENSLDAEQGLVIPPFVEPHIHL 68
|
| >3ls9_A Triazine hydrolase; atrazine chlorohydrolase TRZN; 1.40A {Arthrobacter aurescens} PDB: 3lsc_A* 3lsb_A* Length = 456 | Back alignment and structure |
|---|
Score = 49.5 bits (119), Expect = 2e-06
Identities = 16/68 (23%), Positives = 29/68 (42%), Gaps = 8/68 (11%)
Query: 45 ADLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPG 104
V+T F + L + I +IV+VG + + ++ +G + +PG
Sbjct: 7 LTRVIT----FDDQERELEDADILIDGPKIVAVGKDLS----DRSVSRTIDGRGMIALPG 58
Query: 105 FIDSHVHF 112
I+SH H
Sbjct: 59 LINSHQHL 66
|
| >1o12_A N-acetylglucosamine-6-phosphate deacetylase; structural genomics, TM0814, JCSG, PSI, protein structure initiative; 2.50A {Thermotoga maritima} SCOP: b.92.1.5 c.1.9.10 Length = 376 | Back alignment and structure |
|---|
Score = 49.1 bits (118), Expect = 2e-06
Identities = 16/65 (24%), Positives = 27/65 (41%), Gaps = 14/65 (21%)
Query: 47 LVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFI 106
++V +I D D + I+ G+IV V + V++PGF+
Sbjct: 13 MIVEKVLIVDPIDGEFTGD-VEIEEGKIVKVEKRE-------------CIPRGVLMPGFV 58
Query: 107 DSHVH 111
D H+H
Sbjct: 59 DPHIH 63
|
| >1o12_A N-acetylglucosamine-6-phosphate deacetylase; structural genomics, TM0814, JCSG, PSI, protein structure initiative; 2.50A {Thermotoga maritima} SCOP: b.92.1.5 c.1.9.10 Length = 376 | Back alignment and structure |
|---|
Score = 48.4 bits (116), Expect = 3e-06
Identities = 14/65 (21%), Positives = 26/65 (40%), Gaps = 11/65 (16%)
Query: 514 ISLTDALIAHTLSAARACFLENDVGSLSPGKIADFVILSTSSWEDFAAEVSASIEATYVS 573
S+T+ + ++ L+ D G ++ G AD V+L ED ++ T
Sbjct: 320 CSITELAKVSSYNSCVELGLD-DRGRIAEGTRADLVLLD----EDL------NVVMTIKE 368
Query: 574 GVQAY 578
G +
Sbjct: 369 GEVVF 373
|
| >3la4_A Urease; JACK bean, hydrolase, ME binding, nickel; HET: CME KCX; 2.05A {Canavalia ensiformis} Length = 840 | Back alignment and structure |
|---|
Score = 48.7 bits (116), Expect = 4e-06
Identities = 26/79 (32%), Positives = 37/79 (46%), Gaps = 14/79 (17%)
Query: 45 ADLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADG----------TNVL 94
D V+TN VI D + + + IK+G I S+G A +G T V+
Sbjct: 337 LDTVITNAVII--DYTGIIKADIGIKDGLIASIGK--AGNPDIMNGVFSNMIIGANTEVI 392
Query: 95 NLQGKVVVPGFIDSHVHFI 113
+G +V G ID HVH+I
Sbjct: 393 AGEGLIVTAGAIDCHVHYI 411
|
| >3v7p_A Amidohydrolase family protein; iron binding site, enzyme functio initiative, EFI; HET: TLA; 1.35A {Nitratiruptor SP} Length = 427 | Back alignment and structure |
|---|
Score = 47.2 bits (113), Expect = 8e-06
Identities = 10/65 (15%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
Query: 48 VVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFID 107
++ I T +++ ++A + +I ++ + + + V + + +++PGF +
Sbjct: 3 IIKPFAILT-PQTIIQDKAVAF-DKKIEAIDTVENLIKKYPNAA-VEHDENSLLLPGFAN 59
Query: 108 SHVHF 112
H+H
Sbjct: 60 PHLHL 64
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 44.8 bits (105), Expect = 7e-05
Identities = 57/371 (15%), Positives = 103/371 (27%), Gaps = 91/371 (24%)
Query: 273 GESVQLSWEDFADVYQWASYSEKMKIRVCLFFPLETWSSL-ADLINKTGHVLSD-----W 326
GE Q ++D V++ ++ + + P S D I + +S W
Sbjct: 12 GE-HQYQYKDILSVFE-DAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFW 69
Query: 327 VYL----GGVKAFADGSLGSNSALFHEPYADEP-----------------HNYG-----L 360
L V+ F + L N P E +N
Sbjct: 70 TLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKY 129
Query: 361 QVMELESLLSMTMA--SDKSGLQVAIHAIGDRANDLVLDMY---KSVVVTTGKRDQRFRI 415
V L+ L + A + V I G + K+ V + +
Sbjct: 130 NVSRLQPYLKLRQALLELRPAKNVLID--G---------VLGSGKTWVALDVCLSYKVQC 178
Query: 416 EHAQH---LASGTAARFGDQGIVASMQ--------PQHLLDDADSARKKLGVDRAERESY 464
+ L + ++ +Q D S K
Sbjct: 179 KMDFKIFWLNLKNCNS--PETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRR 236
Query: 465 LFQSLLANNALLALGSD--WPVADINPL---CAI--RTAMKRIPPGWDNAWIPSERISLT 517
L +S N LL L N C I T K++ A + ISL
Sbjct: 237 LLKSKPYENCLLVL--LNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAA--TTTHISLD 292
Query: 518 DALIAHTLSAARACF---LENDVGSL-------SP---GKIADFVILSTSSWEDF----A 560
+ T ++ L+ L +P IA+ + ++W+++
Sbjct: 293 HHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNC 352
Query: 561 AEVSASIEATY 571
+++ IE++
Sbjct: 353 DKLTTIIESSL 363
|
| >4f0l_A Amidohydrolase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.05A {Brucella melitensis biovar abortus} Length = 458 | Back alignment and structure |
|---|
Score = 44.2 bits (105), Expect = 9e-05
Identities = 18/89 (20%), Positives = 24/89 (26%), Gaps = 5/89 (5%)
Query: 469 LLANNALLALGSDWPVADINPLCAIRTAM--KRIPPGWDNAWIPSERISLTDALIAHTLS 526
A +GSD I +R +R+ N +E + L
Sbjct: 317 FAAAGGKFGIGSDSN-VLIGIGDELRQLEYSQRLYHRARNVLAANEGSTGRALFDGAVLG 375
Query: 527 AARACFLENDVGSLSPGKIADFVILSTSS 555
A L G ADFV L
Sbjct: 376 GNIAMGR--PEDGLKKGASADFVSLDVER 402
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 579 | |||
| 3icj_A | 534 | Uncharacterized metal-dependent hydrolase; structu | 100.0 | |
| 3gnh_A | 403 | L-lysine, L-arginine carboxypeptidase CC2672; N-me | 100.0 | |
| 3feq_A | 423 | Putative amidohydrolase; unknown source, sargasso | 100.0 | |
| 2r8c_A | 426 | Putative amidohydrolase; unknown source, sargasso | 100.0 | |
| 3h4u_A | 479 | Amidohydrolase; signature of Zn ligands, structura | 100.0 | |
| 3ls9_A | 456 | Triazine hydrolase; atrazine chlorohydrolase TRZN; | 100.0 | |
| 4dzh_A | 472 | Amidohydrolase; adenosine deaminase, nysgrc, struc | 100.0 | |
| 3lnp_A | 468 | Amidohydrolase family protein OLEI01672_1_465; TIM | 100.0 | |
| 4dyk_A | 451 | Amidohydrolase; adenosine deaminase, nysgrc, struc | 100.0 | |
| 4f0r_A | 447 | 5-methylthioadenosine/S-adenosylhomocysteine DEAM; | 100.0 | |
| 4aql_A | 476 | Guanine deaminase; hydrolase, purine metabolism; H | 100.0 | |
| 2qs8_A | 418 | XAA-Pro dipeptidase; amidohydrolase, TIM barrel, p | 100.0 | |
| 2paj_A | 492 | Putative cytosine/guanine deaminase; NYSGXRC, PSI- | 100.0 | |
| 2p9b_A | 458 | Possible prolidase; protein structure initiative I | 100.0 | |
| 2puz_A | 419 | Imidazolonepropionase; NYSGXRC, PSI-2, N-formimino | 100.0 | |
| 3be7_A | 408 | Zn-dependent arginine carboxypeptidase; unknown so | 100.0 | |
| 2bb0_A | 421 | Imidazolonepropionase; TIM barrel, hydrolase; 2.00 | 100.0 | |
| 2q09_A | 416 | Imidazolonepropionase; 9252H, NYSGXRC, 3-(2, 5-dio | 100.0 | |
| 2qt3_A | 403 | N-isopropylammelide isopropyl amidohydrolase; N-is | 100.0 | |
| 2ood_A | 475 | BLR3880 protein; PSI-II, PSI-2, guanine deaminase, | 100.0 | |
| 2i9u_A | 439 | Cytosine/guanine deaminase related protein; protei | 100.0 | |
| 1ra0_A | 430 | Cytosine deaminase; alpha-beta barrel, hexamer, co | 100.0 | |
| 4f0l_A | 458 | Amidohydrolase; ssgcid, structural genomics, seatt | 100.0 | |
| 3hpa_A | 479 | Amidohydrolase; signature of Zn ligands, structura | 100.0 | |
| 3v7p_A | 427 | Amidohydrolase family protein; iron binding site, | 100.0 | |
| 3mdu_A | 453 | N-formimino-L-glutamate iminohydrolase; amonohydra | 100.0 | |
| 4ac7_C | 570 | Urease subunit alpha; hydrolase, bacillus pasteuri | 100.0 | |
| 4ubp_C | 570 | Protein (urease (chain C)); bacillus pasteurii, ni | 100.0 | |
| 1p1m_A | 406 | Hypothetical protein TM0936; putative metal depend | 100.0 | |
| 3ooq_A | 396 | Amidohydrolase; structural genomics, protein struc | 100.0 | |
| 3sfw_A | 461 | Dihydropyrimidinase; hydrolase, zinc binding; HET: | 100.0 | |
| 1gkr_A | 458 | Hydantoinase, non-ATP dependent L-selective hydant | 100.0 | |
| 1e9y_B | 569 | Urease subunit beta; hydrolase, dodecamer; HET: KC | 99.98 | |
| 3hm7_A | 448 | Allantoinase; metallo-dependent hydrolase, protein | 99.98 | |
| 1xrt_A | 467 | Dihydroorotase, dhoase; amidohydrolase, metalloenz | 99.98 | |
| 3mtw_A | 403 | L-arginine carboxypeptidase CC2672; hydrolase; HET | 99.98 | |
| 3e74_A | 473 | Allantoinase; (beta/alpha)8-barrel domain, small b | 99.98 | |
| 2imr_A | 420 | Hypothetical protein DR_0824; zinc, NYSGXRC, PSI2, | 99.98 | |
| 2z00_A | 426 | Dihydroorotase; zinc binding protein, hydrolase, m | 99.98 | |
| 2vun_A | 386 | Enamidase; nicotinate degradation, binuclear metal | 99.97 | |
| 3dc8_A | 490 | Dihydropyrimidinase; TIM-barrel, hydrolase; HET: K | 99.97 | |
| 2fty_A | 559 | Dihydropyrimidinase; alpha/beta barrel, beta-sandw | 99.97 | |
| 1gkp_A | 458 | Hydantoinase; hydrolase, dihydropyrimidinase, cycl | 99.97 | |
| 3gri_A | 424 | Dihydroorotase, dhoase; hydrolase, IDP00795, metal | 99.97 | |
| 1yrr_A | 382 | N-acetylglucosamine-6-phosphate deacetylase; (beta | 99.97 | |
| 3mpg_A | 428 | Dihydroorotase, dhoase; hydrolase; 2.60A {Bacillus | 99.97 | |
| 2gwn_A | 452 | Dihydroorotase; zinc-binding prote structural geno | 99.97 | |
| 2ogj_A | 417 | Dihydroorotase; TIM barrel, binuclear zinc, imidaz | 99.97 | |
| 1nfg_A | 457 | D-hydantoinase; TIM barrel, hydrolase; HET: KCX; 2 | 99.97 | |
| 2vm8_A | 501 | Dihydropyrimidinase-related protein 2; neurogenesi | 99.97 | |
| 3mkv_A | 426 | Putative amidohydrolase; sargasso SEA, structural | 99.96 | |
| 2ics_A | 379 | Adenine deaminase; TIM barrel, binuclear zinc, ade | 99.96 | |
| 3nqb_A | 608 | Adenine deaminase 2; PSI-II, structural genomics, | 99.95 | |
| 4gy7_A | 840 | Urease; JACK bean, hydrolase, ME binding, nickel; | 99.95 | |
| 1rk6_A | 496 | D-aminoacylase; TIM barrel, beta barrel, insertion | 99.95 | |
| 2ftw_A | 521 | Dihydropyrimidine amidohydrolase; (beta-alpha)8-ba | 99.95 | |
| 3gip_A | 480 | N-acyl-D-glutamate deacylase; amidohydrolase famil | 99.95 | |
| 2vr2_A | 541 | Dihydropyrimidinase; hydantoinase, metal-binding, | 99.95 | |
| 2vhl_A | 396 | N-acetylglucosamine-6-phosphate deacetylase; N- ac | 99.95 | |
| 3iv8_A | 381 | N-acetylglucosamine-6-phosphate deacetylase; IDP01 | 99.94 | |
| 4ep8_C | 566 | Urease subunit alpha; alpha-beta barrel, nickel me | 99.93 | |
| 1onw_A | 390 | Isoaspartyl dipeptidase; amidohydrolase, hydrolase | 99.93 | |
| 1o12_A | 376 | N-acetylglucosamine-6-phosphate deacetylase; struc | 99.87 | |
| 3pnu_A | 359 | Dihydroorotase; TIM barrel, zinc binding, hydrolas | 99.7 | |
| 3ggm_A | 81 | Uncharacterized protein BT9727_2919; bacillus cere | 99.57 | |
| 2z26_A | 347 | Dihydroorotase, dhoase; TIM barrel, hydrolase; HET | 99.51 | |
| 2pgf_A | 371 | Adenosine deaminase; metallo-dependent hydrolase, | 99.1 | |
| 3rys_A | 343 | Adenosine deaminase 1; SGX, hydrolase; HET: ADE; 2 | 98.94 | |
| 3iar_A | 367 | Adenosine deaminase; purine metabolism structural | 98.92 | |
| 3pao_A | 326 | Adenosine deaminase; structural genomics, PSI-2, p | 98.9 | |
| 2ob3_A | 330 | Parathion hydrolase; metalloenzyme, TIM barrel, ne | 98.6 | |
| 1zzm_A | 259 | Putative deoxyribonuclease YJJV; hydrolaze, zinc, | 98.52 | |
| 1yix_A | 265 | Deoxyribonuclease YCFH; TIM barrel, zinc ION, NEW | 98.42 | |
| 1xwy_A | 264 | DNAse TATD, deoxyribonuclease TATD; TIM barrael, z | 98.42 | |
| 2vc7_A | 314 | Aryldialkylphosphatase; phosphotriesterase, promis | 98.41 | |
| 1bf6_A | 291 | Phosphotriesterase homology protein; hypothetical | 98.37 | |
| 3rcm_A | 287 | TATD family hydrolase; HET: CIT; 2.05A {Pseudomona | 98.27 | |
| 2y1h_A | 272 | Putative deoxyribonuclease tatdn3; hydrolase; 2.50 | 98.27 | |
| 2gzx_A | 265 | Putative TATD related DNAse; deoxyribonuclease, NE | 98.13 | |
| 4gxw_A | 380 | Adenosine deaminase; amidohydrolase, COG1816, EFI, | 98.12 | |
| 3ovg_A | 363 | Amidohydrolase; structural genomics, PSI-2, protei | 98.1 | |
| 2a3l_A | 701 | AMP deaminase, AMPD; atampd, AT2G38280, adenosine | 98.04 | |
| 4i6k_A | 294 | Amidohydrolase family protein; enzyme function ini | 98.03 | |
| 1j6o_A | 268 | TATD-related deoxyribonuclease; structural genomic | 97.98 | |
| 2xio_A | 301 | Putative deoxyribonuclease tatdn1; hydrolase; 1.19 | 97.86 | |
| 3tn4_A | 360 | Phosphotriesterase; lactonase, hydrolase; HET: KCX | 97.81 | |
| 3pnz_A | 330 | Phosphotriesterase family protein; amidohydrolase | 97.8 | |
| 3k2g_A | 364 | Resiniferatoxin-binding, phosphotriesterase- relat | 97.78 | |
| 3lgd_A | 508 | Adenosine deaminase CECR1; TIM barrel, dimerizatio | 97.7 | |
| 3gtx_A | 339 | Organophosphorus hydrolase; mutant, amidohydrolase | 97.67 | |
| 3ipw_A | 325 | Hydrolase TATD family protein; niaid, ssgcid, seat | 97.49 | |
| 4d9a_A | 303 | 2-pyrone-4,6-dicarbaxylate hydrolase; structural g | 97.3 | |
| 3guw_A | 261 | Uncharacterized protein AF_1765; alpha-beta protei | 97.26 | |
| 2dvt_A | 327 | Thermophilic reversible gamma-resorcylate decarbo; | 97.25 | |
| 3rhg_A | 365 | Putative phophotriesterase; hydrolase, amidohydrol | 97.16 | |
| 3gg7_A | 254 | Uncharacterized metalloprotein; structural genomic | 96.18 | |
| 2ffi_A | 288 | 2-pyrone-4,6-dicarboxylic acid hydrolase, putativ; | 95.53 | |
| 3cjp_A | 272 | Predicted amidohydrolase, dihydroorotase family; s | 95.13 | |
| 2wje_A | 247 | CPS4B, tyrosine-protein phosphatase CPSB; capsule | 94.49 | |
| 3irs_A | 291 | Uncharacterized protein BB4693; structural genomic | 93.5 | |
| 3qy7_A | 262 | Tyrosine-protein phosphatase YWQE; TIM barrel, pol | 92.52 | |
| 2f6k_A | 307 | Metal-dependent hydrolase; metal dependent hydroly | 92.27 | |
| 4do7_A | 303 | Amidohydrolase 2; enzyme function initiative, EFI, | 90.37 | |
| 3ij6_A | 312 | Uncharacterized metal-dependent hydrolase; structu | 88.05 | |
| 1v77_A | 212 | PH1877P, hypothetical protein PH1877; RNAse P prot | 87.74 | |
| 3nur_A | 357 | Amidohydrolase; TIM barrel; 1.75A {Staphylococcus | 87.2 | |
| 3e2v_A | 401 | 3'-5'-exonuclease; structural genomics, hydrolase, | 85.4 | |
| 4inf_A | 373 | Metal-dependent hydrolase; amidohydrolase, metal b | 83.34 | |
| 2hbv_A | 334 | 2-amino-3-carboxymuconate 6-semialdehyde decarbox; | 81.75 |
| >3icj_A Uncharacterized metal-dependent hydrolase; structural genomics, amidohydrolase, PSI-2, protein structur initiative; HET: KCX; 1.95A {Pyrococcus furiosus} PDB: 3etk_A* 3igh_X* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-65 Score=550.43 Aligned_cols=467 Identities=30% Similarity=0.457 Sum_probs=413.1
Q ss_pred cEEEEcCeEEeCCCCCCeeeEEEEECCEEEEecChHHHHhhc-cCCCeEEeCCCCeeecccccccccccccCcccccccc
Q 008063 46 DLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLA-ADGTNVLNLQGKVVVPGFIDSHVHFIPGGLQMARVKL 124 (579)
Q Consensus 46 ~~likn~~v~~~~~~~~~~~~v~I~~GkI~~Ig~~~~~~~~~-~~~~~viD~~g~~V~PG~ID~H~H~~~~~~~~~~~~~ 124 (579)
.++|+|++|+++++......+|+|+||||++||+..+..... +++.++||++|++|+|||||+|+|+..++.....+++
T Consensus 37 ~~li~ng~I~t~~~~~~~~~~v~v~~g~I~~vg~~~~~~~~~~~~~~~viD~~G~~v~PGfiD~H~H~~~~g~~~~~~dl 116 (534)
T 3icj_A 37 MKALINGTIYTSFSPVKKVSGLVISNERVLYAGDSSTALRIAELAGGEIIDLKGKFVMPAFFDSHLHLDELGMSLEMVDL 116 (534)
T ss_dssp EEEEESSEEEEEETTEEEESEEEEETTEEEEEECHHHHHHHHHHHTCEEEECTTCEEEECEEEEEECHHHHHHHHHSEEC
T ss_pred CEEEECCEEECCCCCCceeeEEEEECCEEEEEcChHHHHhhccCCCCEEEECCCCEEecCEeehhhhhhhhhhhcCccCC
Confidence 489999999999776556779999999999999987764322 3567899999999999999999999998888888999
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCCCeEEEeCCCCCCCCCCCCChHHhhhhCCCCeEEEEeCCCchhhhcHHHHHHcCCCCC
Q 008063 125 RGVSHKDEFVRRVKEAVKNSKKGSWILGGGWNNDLWGGDLPMASWIDDITPHNPVWLSRMDGHMGLANSVALQLVGITNL 204 (579)
Q Consensus 125 ~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~p~~~~ld~~~~~~p~~~~~~~~~~~~~n~~~~~~~g~~~~ 204 (579)
.++.+.+++..+++++... ||+|.||.+..| ++.|++++||++ ++|+++.+.++|..++|+++|+.+|| ..
T Consensus 117 ~~~~s~~e~~~~l~~~~~~-----wi~g~G~~~~~~-~~~pt~~~LD~~--~~Pv~l~~~~~H~~~~Ns~AL~~~gi-~~ 187 (534)
T 3icj_A 117 RGVKSMEELVERVKKGRGR-----IIFGFGWDQDEL-GRWPTREDLDVI--DRPVFLYRRCFHVAVMNSKMIDLLNL-KP 187 (534)
T ss_dssp TTCCSHHHHHHHHHTCCSS-----SEEEEEECHHHH-SSCCCHHHHTTS--SSCEEEEETTSSEEEECHHHHHHHCC-CC
T ss_pred CCCCCHHHHHHHHHHHHhh-----CEEEcccCHHHh-cCCCCHHHHhhC--CCeEEEEecCCcHhHHhHHHHHHcCC-CC
Confidence 9999999999999987653 999999999999 899999999999 99999999999999999999999999 87
Q ss_pred CCCCCCCeEEeCCCCCcCEEEhHhHHHHhcccCCC-C-CHHHHHHHHHHHHHHHHhcCccEEEeCCcCCCCCccccchHH
Q 008063 205 SEDPNGGTIMKTSSGEPTGLLIDAAMKLILPWIPE-V-SVDERREALLRASNLALSRGVTTVVDFGRYYPGESVQLSWED 282 (579)
Q Consensus 205 ~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~Git~v~~~~~~~~~~~~~~~~~~ 282 (579)
+++|+ |. +|++.|.+...+...+|. . +.++.++.++.+.+.+.+.|+|++.+++. .+.
T Consensus 188 t~~p~---------G~-tG~l~e~A~~~v~~~~p~~~l~~~~~~~~l~~a~~~~~~~GiTsv~d~~~----------~~~ 247 (534)
T 3icj_A 188 SKDFD---------ES-TGIVRERALEESRKIINEKILTVKDYKHYIESAQEHLLSLGVHSVGFMSV----------GEK 247 (534)
T ss_dssp CTTEE---------TT-TTEEEHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTEEEEEEEEE----------CHH
T ss_pred CCCCC---------CC-CceeeHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHhCCCEEEEeCCC----------CHH
Confidence 77765 78 999999998888888887 6 89999999999999999999999999852 146
Q ss_pred HHHHHHHHhhcCCCeeEEEEccCccchhhHHHHHHhcCCCCCCceEEceEEEEEcCccCCCcccccCCCCCCCCCCcccC
Q 008063 283 FADVYQWASYSEKMKIRVCLFFPLETWSSLADLINKTGHVLSDWVYLGGVKAFADGSLGSNSALFHEPYADEPHNYGLQV 362 (579)
Q Consensus 283 ~~~~~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~k~~~dg~~~~~~~~~~~~~~~~~~~~~~~~ 362 (579)
..+.++.+.+++.+++|++.+......+...+... .....++++.+++|++.||++++.++++.+||.+.++..|...
T Consensus 248 ~~~~~~~l~~~g~l~~rv~~~~~~~~~~~~~~~~~--~~~~~~~~~~~gvK~~~DG~~~~~tA~l~~pY~d~~~~~g~~~ 325 (534)
T 3icj_A 248 ALKALFELEREGRLKMNVFAYLSPELLDKLEELNL--GKFEGRRLRIWGVKLFVDGSLGARTALLSEPYTDNPTTSGELV 325 (534)
T ss_dssp HHHHHHHHHHTTCCCSEEEEEECGGGHHHHHHHTC--CSEECSSEEEEEEEEESCCCTTTTCSCCSSCBTTBTTCCCCCS
T ss_pred HHHHHHHHHhCCCCcEEEEEecCHHHHHHHHHhcc--ccCCCCcEEEEeEEEEEeCCCCccchhhcCCccCCCCCCCccc
Confidence 67888899999999999997765543333332211 2345788999999999999999999999999999988889999
Q ss_pred CCHHHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhcCCCCCCceEeeccCCChhhHHHHhhCCcEEEecccc
Q 008063 363 MELESLLSMTMASDKSGLQVAIHAIGDRANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLASGTAARFGDQGIVASMQPQH 442 (579)
Q Consensus 363 ~~~~~l~~~~~~a~~~g~~i~iH~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~H~~~~~~~~~~~~~~~~i~~~~~p~~ 442 (579)
+++++++++++.|++.|+++.+|+.|+.+++..++++++.. .++.++|+.++++++++++++.|+.+++||.+
T Consensus 326 ~~~e~l~~~v~~A~~~G~~v~~Ha~gd~ai~~~l~a~~~~~-------~r~~ieH~~~~~~e~i~~la~~gv~~~~~P~~ 398 (534)
T 3icj_A 326 MNKDEIVEVIERAKPLGLDVAVHAIGDKAVDVALDAFEEAE-------FSGRIEHASLVRDDQLERIKELKVRISAQPHF 398 (534)
T ss_dssp SCHHHHHHHHHHHTTTTCEEEEEECSHHHHHHHHHHHHHHT-------CCCEEEECCBCCHHHHHHHHHHTCEEEECTTH
T ss_pred CCHHHHHHHHHHHHHCCCEEEEEEcChHHHHHHHHHHHhcc-------CCCEEEECCCCCHHHHHHHHHcCCeEEEcccc
Confidence 99999999999999999999999999999999999998764 58999999999999999999999999999998
Q ss_pred cccchhHHHHhhChhhhhhhhhhHHHHHHCCCeeeecCCCCCCCCCHHHHHHHHHcccCCCCCCCCCCCCCCCHHHHHHH
Q 008063 443 LLDDADSARKKLGVDRAERESYLFQSLLANNALLALGSDWPVADINPLCAIRTAMKRIPPGWDNAWIPSERISLTDALIA 522 (579)
Q Consensus 443 ~~~~~~~~~~~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~ 522 (579)
...+. ++..+++++|. +..+|++.++++ +++++|||++..+.+++..++.++.| ..+....++|+++||++
T Consensus 399 ~~~~~-~~~~~lg~~r~-~~~~p~~~l~~~-v~valGSD~p~~~~~p~~~~~~av~r------~~~~~~~~ls~~eaL~~ 469 (534)
T 3icj_A 399 IVSDW-WIVNRVGEERA-KWAYRLKTLSSI-TKLGFSTDSPIEPADPWVSIDAAVNR------YVVDPGERVSREEALHL 469 (534)
T ss_dssp HHHCT-THHHHHHHHHG-GGBTCHHHHHHH-SCEEECCTTTTSCCCHHHHHHHHHHC------CSSCGGGCCCHHHHHHH
T ss_pred ccchh-HHHHhhCHHHH-hccHHHHHHHHh-CCEEeecCCCCCCCCHHHHHHHHHhc------cccCcccCCCHHHHHHH
Confidence 87655 66677888888 888999999999 99999999998889999999999987 23456778999999999
Q ss_pred HcHHHHHhcccCCccccccCCCcccEEEeCCCCCCChh
Q 008063 523 HTLSAARACFLENDVGSLSPGKIADFVILSTSSWEDFA 560 (579)
Q Consensus 523 ~T~npA~~lgl~~~~G~I~~G~~ADlvvld~~~~~~~~ 560 (579)
+|.|+|+.+|++ ++|+|+|||.|||||+|.||++++.
T Consensus 470 ~T~~~A~~lg~e-~~GsLe~Gk~ADlvvld~dpl~~~~ 506 (534)
T 3icj_A 470 YTHGSAQVTLAE-DLGKLERGFRAEYIILDRDPLKEMK 506 (534)
T ss_dssp TTHHHHHHTTCT-TCSCCSTTSBCCEEEESSCTTC---
T ss_pred HHHHHHHHhCCC-CCeEECCCCCcCEEEECCChhhccc
Confidence 999999999999 8999999999999999999998654
|
| >3feq_A Putative amidohydrolase; unknown source, sargasso SEA, structural GEN protein structure initiative, PSI; 2.63A {Unidentified} PDB: 3lwy_A* 3n2c_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-39 Score=337.86 Aligned_cols=354 Identities=19% Similarity=0.192 Sum_probs=246.8
Q ss_pred CccEEEEcCeEEeCCCCC-CeeeEEEEECCEEEEecChHHHHhhccCCCeEEeCCCCeeecccccccccccccCcccccc
Q 008063 44 EADLVVTNGVIFTGDDSL-LFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHFIPGGLQMARV 122 (579)
Q Consensus 44 ~~~~likn~~v~~~~~~~-~~~~~v~I~~GkI~~Ig~~~~~~~~~~~~~~viD~~g~~V~PG~ID~H~H~~~~~~~~~~~ 122 (579)
+++++|+|++|+|+++.. ...++|+|+||||++|++.... +++.++||++|++|+|||||+|+|+......
T Consensus 3 ~~~~~i~n~~v~~~~~~~~~~~~~v~I~~g~I~~vg~~~~~----~~~~~viD~~G~~v~PGlID~H~H~~~~~~~---- 74 (423)
T 3feq_A 3 LTITVLQGGNVLDLERGVLLEHHHVVIDGERIVEVTDRPVD----LPNAQAIDVRGKTVMPGFIDCHVHVLASNAN---- 74 (423)
T ss_dssp -CEEEEEEEEEEETTTTEEEEEEEEEEETTEEEEEECSCCC----CSSCEEEECTTCEEEECEEEEEECTTCCSSC----
T ss_pred ceEEEEEccEEEeCCCCcccCCceEEEECCEEEEecCCCCC----CCCCeEEeCCCCEECCCeeeeEeeecccCCC----
Confidence 457899999999997653 3567999999999999985221 3678999999999999999999998654320
Q ss_pred ccCCCCCHHHHHHHHHHHHHcCCCCCeEEEeCCCCCCCCCCCCChHHhhhhCCCCeEEEEeCCCchhhhcHHHHHHcCCC
Q 008063 123 KLRGVSHKDEFVRRVKEAVKNSKKGSWILGGGWNNDLWGGDLPMASWIDDITPHNPVWLSRMDGHMGLANSVALQLVGIT 202 (579)
Q Consensus 123 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~p~~~~ld~~~~~~p~~~~~~~~~~~~~n~~~~~~~g~~ 202 (579)
....
T Consensus 75 --------------------------------------------~~~~-------------------------------- 78 (423)
T 3feq_A 75 --------------------------------------------LGVN-------------------------------- 78 (423)
T ss_dssp --------------------------------------------HHHH--------------------------------
T ss_pred --------------------------------------------hhhh--------------------------------
Confidence 0000
Q ss_pred CCCCCCCCCeEEeCCCCCcCEEEhHhHHHHhcccCCCCCHHHHHHHHHHHHHHHHhcCccEEEeCCcCCCCCccccchHH
Q 008063 203 NLSEDPNGGTIMKTSSGEPTGLLIDAAMKLILPWIPEVSVDERREALLRASNLALSRGVTTVVDFGRYYPGESVQLSWED 282 (579)
Q Consensus 203 ~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Git~v~~~~~~~~~~~~~~~~~~ 282 (579)
...+.++.........+.++++|+|++.+++.. ..
T Consensus 79 -----------------------------------~~~~~~~~~~~~~~~~~~~l~~GvTtv~d~~~~---------~~- 113 (423)
T 3feq_A 79 -----------------------------------ATQPNILAAIRSLPILDAMLSRGFTSVRDAGGA---------DW- 113 (423)
T ss_dssp -----------------------------------HHSCHHHHHHTHHHHHHHHHHTTEEEEEECSSC---------CH-
T ss_pred -----------------------------------hcCCHHHHHHHHHHHHHHHHhCCeEEEEeCCCc---------hH-
Confidence 011223444455667888999999999998631 11
Q ss_pred HHHHHHHHhhcCCCeeEEEEccCc---------------------------------cchhhHHHHHHhcCCCCCCceEE
Q 008063 283 FADVYQWASYSEKMKIRVCLFFPL---------------------------------ETWSSLADLINKTGHVLSDWVYL 329 (579)
Q Consensus 283 ~~~~~~~~~~~~~~~i~v~~~~~~---------------------------------~~~~~~~~~~~~~~~~~~~~~~~ 329 (579)
.+.+.+......+.+++...+. ...++..+......... .
T Consensus 114 --~l~~~~~~~~~~g~r~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g-----~ 186 (423)
T 3feq_A 114 --SLMQAVETGLVSGPRIFPSGKALSQTGGHGDFRPRGDLLEPCSCCFRTGAIARVVDGVEGVRLAVREEIQKG-----A 186 (423)
T ss_dssp --HHHHHHHTTSSCSCEEECCCSEEECTTSTTCCCCC---CCCCCSSCCTTCSEEECCSHHHHHHHHHHHHHTT-----C
T ss_pred --HHHHHHHcCCCCCCeEEecCcccccCCCCccccccccccccccccccccccceecCCHHHHHHHHHHHHHcC-----C
Confidence 2333344444445565542111 11122222222111111 2
Q ss_pred ceEEEEEcCccCCCcccccCCCCCCCCCCcccCCCHHHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhcCCC
Q 008063 330 GGVKAFADGSLGSNSALFHEPYADEPHNYGLQVMELESLLSMTMASDKSGLQVAIHAIGDRANDLVLDMYKSVVVTTGKR 409 (579)
Q Consensus 330 ~g~k~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~i~iH~~g~~~~~~~~~~~~~~~~~~~~~ 409 (579)
..+|++.+|.+.... ++.+...++++.++++++.|++.|+++.+|+.++.+++..++. +
T Consensus 187 ~~ik~~~~g~~~~~~-----------~p~~~~~~~~e~l~~~~~~A~~~g~~v~~H~~~~~~i~~~l~~--------g-- 245 (423)
T 3feq_A 187 TQIKIMASGGVASPT-----------DPIANTQYSEDEIRAIVDEAEAANTYVMAHAYTGRAIARAVRC--------G-- 245 (423)
T ss_dssp SSEEEECBCCSSSSS-----------CCTTSBCSCHHHHHHHHHHHHHTTCCEEEEEEEHHHHHHHHHH--------T--
T ss_pred CEEEEeccCCcCCCC-----------CCcccccCCHHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHc--------C--
Confidence 357888777654321 1123455899999999999999999999999987776666553 2
Q ss_pred CCCceEeeccCCChhhHHHHhhCCcEEEe-----------------cccccccchhHHHHhhChhhhhhhhhhHHHHHHC
Q 008063 410 DQRFRIEHAQHLASGTAARFGDQGIVASM-----------------QPQHLLDDADSARKKLGVDRAERESYLFQSLLAN 472 (579)
Q Consensus 410 ~~~~~i~H~~~~~~~~~~~~~~~~i~~~~-----------------~p~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~~ 472 (579)
...+.|+..+++++++++++.++.++. +|.++. .++..+. ....+++.++++
T Consensus 246 --~~~i~H~~~~~~~~~~~l~~~gv~~~pt~~~~~~~~~~~~~~~~~p~~~~--------~~~~~~~-~~~~~~~~l~~~ 314 (423)
T 3feq_A 246 --VRTIEHGNLVDEAAAKLMHEHGAFVVPTLVTYDALAKHGAEFGMPPESVA--------KVASVQQ-KGRESLEIYANA 314 (423)
T ss_dssp --CCEEEEEEECCHHHHHHHHHHTCEEECCTHHHHHHHHHTGGGTCCTTTSS--------THHHHHH-HHHHHHHHHHHH
T ss_pred --CCEEeccCcCCHHHHHHHHHCCCccccchHHHHHHHhcccccCCCHHHHH--------HHHHHHH-HHHHHHHHHHHC
Confidence 458999999999999999999998842 232222 1121222 456789999999
Q ss_pred CCeeeecCCCCCCC-CCHHHHHHHHHcccCCCCCCCCCCCCCCCHHHHHHHHcHHHHHhcccCCccccccCCCcccEEEe
Q 008063 473 NALLALGSDWPVAD-INPLCAIRTAMKRIPPGWDNAWIPSERISLTDALIAHTLSAARACFLENDVGSLSPGKIADFVIL 551 (579)
Q Consensus 473 Gi~v~~gsD~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~npA~~lgl~~~~G~I~~G~~ADlvvl 551 (579)
|+++++|||++..+ .+...+++... + .++++++|+++|.|||++||+++++|+|++||.|||||+
T Consensus 315 Gv~v~~gTD~~~~~~~~~~~e~~~~~-------------~-~ls~~eal~~aT~~~A~~lg~~~~~G~i~~G~~ADlvv~ 380 (423)
T 3feq_A 315 GVKMGFGSDLLGEMHAFQSGEFRIRA-------------E-VLGNLEALRSATTVAAEIVNMQGQLGVIAVGAIADLVVL 380 (423)
T ss_dssp TCCBCCCCCCCGGGGGGTTHHHHHHH-------------T-TSCHHHHHHTTTHHHHHHTTCBTTBSSCCTTSBCCEEEE
T ss_pred CCEEEECCCCCCCCCcchHHHHHHHH-------------h-hCCHHHHHHHHHHHHHHHhCCCCCceeECCCCcCCEEEE
Confidence 99999999986433 22334443322 1 289999999999999999999998999999999999999
Q ss_pred CCCCCCChhhccC--CeEEEEEECCEEeCC
Q 008063 552 STSSWEDFAAEVS--ASIEATYVSGVQAYP 579 (579)
Q Consensus 552 d~~~~~~~~~~~~--~~v~~v~v~G~~v~~ 579 (579)
|.||++++..+.. .+|..||++|++||+
T Consensus 381 d~~p~~~~~~~~~~~~~v~~v~~~G~~v~~ 410 (423)
T 3feq_A 381 DGNPLEDIGVVADEGARVEYVLQRGTLVKR 410 (423)
T ss_dssp SSCTTTCGGGTSSSTTSEEEEEETTEEEEE
T ss_pred CCChhhCHHHHhccCCCceEEEECCEEEeC
Confidence 9999987765532 589999999999873
|
| >2r8c_A Putative amidohydrolase; unknown source, sargasso SEA, structural genomics, protein structure initiative, PSI; 2.31A {Unidentified} PDB: 3mkv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-38 Score=336.33 Aligned_cols=362 Identities=17% Similarity=0.179 Sum_probs=249.3
Q ss_pred CccEEEEcCeEEeCCCC-CCeeeEEEEECCEEEEecChHHHHhhccCCCeEEeCCCCeeecccccccccccccCcccccc
Q 008063 44 EADLVVTNGVIFTGDDS-LLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHFIPGGLQMARV 122 (579)
Q Consensus 44 ~~~~likn~~v~~~~~~-~~~~~~v~I~~GkI~~Ig~~~~~~~~~~~~~~viD~~g~~V~PG~ID~H~H~~~~~~~~~~~ 122 (579)
+++++|+|++|+++.+. ....++|+|+||||++|++.... +++.++||++|++|+|||||+|+|+.......
T Consensus 3 m~~~~i~n~~i~~~~~~~~~~~~~i~i~~g~I~~i~~~~~~----~~~~~~iD~~g~~v~PGliD~H~H~~~~~~~~--- 75 (426)
T 2r8c_A 3 LTTFLFRNGALLDPDHPDLLQGFEILIEDGFIREVSDKPIK----SSNAHVIDVKGKTIMPGLIDLHVHVVAIEFNL--- 75 (426)
T ss_dssp -CEEEEEEEEECCTTSSSCEEEEEEEEESSBEEEEESSCCC----CSSCEEEECTTCEEEECEEEEEECTTCCSSCH---
T ss_pred cccEEEEeeEEEeCCCCcccCCceEEEECCEEEEEcCCCCC----CCCCeEEECCCCEEcCCeEeeeeccccccCCc---
Confidence 45799999999999754 34567999999999999974221 36789999999999999999999986543200
Q ss_pred ccCCCCCHHHHHHHHHHHHHcCCCCCeEEEeCCCCCCCCCCCCChHHhhhhCCCCeEEEEeCCCchhhhcHHHHHHcCCC
Q 008063 123 KLRGVSHKDEFVRRVKEAVKNSKKGSWILGGGWNNDLWGGDLPMASWIDDITPHNPVWLSRMDGHMGLANSVALQLVGIT 202 (579)
Q Consensus 123 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~p~~~~ld~~~~~~p~~~~~~~~~~~~~n~~~~~~~g~~ 202 (579)
...
T Consensus 76 ---------------------------------------------~~~-------------------------------- 78 (426)
T 2r8c_A 76 ---------------------------------------------PRV-------------------------------- 78 (426)
T ss_dssp ---------------------------------------------HHH--------------------------------
T ss_pred ---------------------------------------------hhh--------------------------------
Confidence 000
Q ss_pred CCCCCCCCCeEEeCCCCCcCEEEhHhHHHHhcccCCCCCHHHHHHHHHHHHHHHHhcCccEEEeCCcCCCCCccccchHH
Q 008063 203 NLSEDPNGGTIMKTSSGEPTGLLIDAAMKLILPWIPEVSVDERREALLRASNLALSRGVTTVVDFGRYYPGESVQLSWED 282 (579)
Q Consensus 203 ~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Git~v~~~~~~~~~~~~~~~~~~ 282 (579)
...+.++.........+.++++|+|++.+++.. ..
T Consensus 79 -----------------------------------~~~~~~~~~~~~~~~~~~~l~~GvTtv~d~~~~---------~~- 113 (426)
T 2r8c_A 79 -----------------------------------ATLPNVLVTLRAVPIMRAMLRRGFTTVRDAGGA---------GY- 113 (426)
T ss_dssp -----------------------------------HHSCHHHHHHHHHHHHHHHHHTTEEEEEECSSC---------CH-
T ss_pred -----------------------------------ccCCHHHHHHHHHHHHHHHHhCCeEEEEeCCCc---------hH-
Confidence 011224445556667888999999999998631 01
Q ss_pred HHHHHHHHhhcCCCeeEEEEccCc------------------------------------cchhhHHHHHHhcCCCCCCc
Q 008063 283 FADVYQWASYSEKMKIRVCLFFPL------------------------------------ETWSSLADLINKTGHVLSDW 326 (579)
Q Consensus 283 ~~~~~~~~~~~~~~~i~v~~~~~~------------------------------------~~~~~~~~~~~~~~~~~~~~ 326 (579)
.+.+.+......+.++....+. ...++..+.........
T Consensus 114 --~l~~~i~~~~~~gpri~~~g~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g--- 188 (426)
T 2r8c_A 114 --PFKQAVESGLVEGPRLFVSGRALSQTGGHADPRARSDYMPPDSPCGCCVRVGALGRVADGVDEVRRAVREELQMG--- 188 (426)
T ss_dssp --HHHHHHHTTSSCCCEEEECCSEEECTTSTTCCCCCSSBCCCSCSSSSBCCTTCCEEECCSHHHHHHHHHHHHHHT---
T ss_pred --HHHHHHHcCCCCCCeEEecCCcccCCCCCcccccccccccccccccccccccccccccCCHHHHHHHHHHHHHcC---
Confidence 2333344434445566543211 11112222222111111
Q ss_pred eEEceEEEEEcCccCCCcccccCCCCCCCCCCcccCCCHHHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhc
Q 008063 327 VYLGGVKAFADGSLGSNSALFHEPYADEPHNYGLQVMELESLLSMTMASDKSGLQVAIHAIGDRANDLVLDMYKSVVVTT 406 (579)
Q Consensus 327 ~~~~g~k~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~i~iH~~g~~~~~~~~~~~~~~~~~~ 406 (579)
...+|++.+|.+.... ++++...++++.++++++.|++.|+++.+|+.+..+++..++.
T Consensus 189 --~~~ik~~~~G~~~~~~-----------~p~~~~~~~~e~l~~~~~~A~~~g~~v~~H~~~~~~i~~al~~-------- 247 (426)
T 2r8c_A 189 --ADQIKIMASGGVASPT-----------DPVGVFGYSEDEIRAIVAEAQGRGTYVLAHAYTPAAIARAVRC-------- 247 (426)
T ss_dssp --CSSEEEECBCCSSSSS-----------CCSSCBCSCHHHHHHHHHHHHHTTCCEEEEECSHHHHHHHHHT--------
T ss_pred --CCEEEEEecCCCCCCC-----------CCcccccCCHHHHHHHHHHHHHcCCEEEEEeCChHHHHHHHHc--------
Confidence 2357888887654321 1123455899999999999999999999999987766655542
Q ss_pred CCCCCCceEeeccCCChhhHHHHhhCCcEEEec-----ccccc----cchhHHHHhhChhhhhhhhhhHHHHHHCCCeee
Q 008063 407 GKRDQRFRIEHAQHLASGTAARFGDQGIVASMQ-----PQHLL----DDADSARKKLGVDRAERESYLFQSLLANNALLA 477 (579)
Q Consensus 407 ~~~~~~~~i~H~~~~~~~~~~~~~~~~i~~~~~-----p~~~~----~~~~~~~~~l~~~~~~~~~~~l~~l~~~Gi~v~ 477 (579)
+ ...+.|+..+++++++++++.++.++.+ |.... .........++..+. ....+++.++++|++++
T Consensus 248 G----~~~i~H~~~~~~~~~~~~~~~gv~~~pt~~~~~~~~~~~~~~~~~p~~~~~~~~~~~-~~~~~~~~~~~~Gv~v~ 322 (426)
T 2r8c_A 248 G----VRTIEHGNLIDDETARLVAEHGAYVVPTLVTYDALASEGEKYGLPPESIAKIADVHG-AGLHSIEIMKRAGVKMG 322 (426)
T ss_dssp T----CSEEEECTTCCHHHHHHHHHTTCEEECCTHHHHHHHHHTTTTTCCHHHHTTSTTTGG-GHHHHHHHHHHTTCEEC
T ss_pred C----CCEEecCCcCCHHHHHHHHHcCCeEeechHHHHHHhhhccccCCCHHHHHHHHHHHH-HHHHHHHHHHHcCCeEE
Confidence 2 5689999999999999999999988432 11110 001122223333333 56778999999999999
Q ss_pred ecCCCCCCC-CCHHHHHHHHHcccCCCCCCCCCCCCCCCHHHHHHHHcHHHHHhcccCCccccccCCCcccEEEeCCCCC
Q 008063 478 LGSDWPVAD-INPLCAIRTAMKRIPPGWDNAWIPSERISLTDALIAHTLSAARACFLENDVGSLSPGKIADFVILSTSSW 556 (579)
Q Consensus 478 ~gsD~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~npA~~lgl~~~~G~I~~G~~ADlvvld~~~~ 556 (579)
+|||.+..+ .....+++.. .+ .++++++|+++|.|||+++|+++++|+|++||.|||||+|.||+
T Consensus 323 lgTD~~~~~~~~~~~e~~~~-------------~~-~l~~~eal~~aT~~~A~~lg~~~~~G~i~~G~~ADlvvld~~p~ 388 (426)
T 2r8c_A 323 FGTDLLGEAQRLQSDEFRIL-------------AE-VLSPAEVIASATIVSAEVLGMQDKLGRIVPGAHADVLVVDGNPL 388 (426)
T ss_dssp CCCCCCGGGGGGTTHHHHHH-------------TT-TSCHHHHHHHTTHHHHHHTTCTTTSSSCCTTSBCCEEEESSCTT
T ss_pred EecCCCCCCCcchHHHHHHH-------------Hh-cCCHHHHHHHHHHHHHHHhCCCCCCccCCCCCcCCEEEECCChH
Confidence 999986433 2223333322 12 28999999999999999999999899999999999999999999
Q ss_pred CChhhccC--CeEEEEEECCEEeCC
Q 008063 557 EDFAAEVS--ASIEATYVSGVQAYP 579 (579)
Q Consensus 557 ~~~~~~~~--~~v~~v~v~G~~v~~ 579 (579)
+++..+.. .+|..||++|++||+
T Consensus 389 ~~~~~~~~~~~~v~~v~~~G~~v~~ 413 (426)
T 2r8c_A 389 KSVDCLLGQGEHIPLVMKDGRLFVN 413 (426)
T ss_dssp TCGGGTCSSSTTCCEEEETTEEEEE
T ss_pred hCHHHHhCcCCcceEEEECCEEEec
Confidence 97765532 589999999999873
|
| >3ls9_A Triazine hydrolase; atrazine chlorohydrolase TRZN; 1.40A {Arthrobacter aurescens} PDB: 3lsc_A* 3lsb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-38 Score=336.65 Aligned_cols=390 Identities=17% Similarity=0.175 Sum_probs=259.3
Q ss_pred EEEEcC-eEEeCCC--CCCeeeEEEEECCEEEEecChHHHHhhccCCCeEEeCCCCeeecccccccccccccCccccccc
Q 008063 47 LVVTNG-VIFTGDD--SLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHFIPGGLQMARVK 123 (579)
Q Consensus 47 ~likn~-~v~~~~~--~~~~~~~v~I~~GkI~~Ig~~~~~~~~~~~~~~viD~~g~~V~PG~ID~H~H~~~~~~~~~~~~ 123 (579)
++|+|+ .|+++++ ....+++|+|+||||++|++..+ . +++.++||++|++|+|||||+|+|+......... .
T Consensus 2 ~li~n~~~v~t~d~~~~~~~~~~v~i~~g~I~~vg~~~~--~--~~~~~viD~~g~~v~PG~ID~H~H~~~~~~~g~~-~ 76 (456)
T 3ls9_A 2 ILIRGLTRVITFDDQERELEDADILIDGPKIVAVGKDLS--D--RSVSRTIDGRGMIALPGLINSHQHLYEGAMRAIP-Q 76 (456)
T ss_dssp EEEEEEEEEECCCTTCCEEEEEEEEEETTEEEEEESSCC--C--TTCSEEEECTTEEEEECEEEEEECGGGGGGBTCG-G
T ss_pred EEEEcCcEEEEcCCCCceeccceEEEECCEEEEeCCCCC--C--CCCCeEEeCCCCEEecCeeecccccchhhhcccc-c
Confidence 789999 7777764 33478899999999999998632 1 3568999999999999999999999765331000 0
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCCCCeEEEeCCCCCCCCCCCCChHHhhhhCCCCeEEEEeCCCchhhhcHHHHHHcCCCC
Q 008063 124 LRGVSHKDEFVRRVKEAVKNSKKGSWILGGGWNNDLWGGDLPMASWIDDITPHNPVWLSRMDGHMGLANSVALQLVGITN 203 (579)
Q Consensus 124 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~p~~~~ld~~~~~~p~~~~~~~~~~~~~n~~~~~~~g~~~ 203 (579)
....+.. +|+....
T Consensus 77 -~~~~~l~------------------------------------~~l~~~~----------------------------- 90 (456)
T 3ls9_A 77 -LERVTMA------------------------------------SWLEGVL----------------------------- 90 (456)
T ss_dssp -GSSCCHH------------------------------------HHHHHHH-----------------------------
T ss_pred -CCCCCHH------------------------------------HHHHHhc-----------------------------
Confidence 0011111 1211100
Q ss_pred CCCCCCCCeEEeCCCCCcCEEEhHhHHHHhcccCCCCCHHHHHHHHHHHHHHHHhcCccEEEeCCcCCCCCccccchHHH
Q 008063 204 LSEDPNGGTIMKTSSGEPTGLLIDAAMKLILPWIPEVSVDERREALLRASNLALSRGVTTVVDFGRYYPGESVQLSWEDF 283 (579)
Q Consensus 204 ~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Git~v~~~~~~~~~~~~~~~~~~~ 283 (579)
... ..+.. ....++++.+.....+...++++|+|++.+++...+..... ...
T Consensus 91 -----------------------~~~-~~~~~-~~~~~~e~~~~~~~~~~~~~l~~GvTtv~d~~~~~~~~~~~---~~~ 142 (456)
T 3ls9_A 91 -----------------------TRS-AGWWR-DGKFGPDVIREVARAVLLESLLGGITTVADQHLFFPGATAD---SYI 142 (456)
T ss_dssp -----------------------HHH-HHHHH-TTSSSHHHHHHHHHHHHHHHHHTTEEEEEEEECCCCSSSCC---THH
T ss_pred -----------------------ccc-ccccc-cccCCHHHHHHHHHHHHHHHHhCCeeEEEeccccccCcccc---hhH
Confidence 000 00000 01356788899999999999999999999984332222101 112
Q ss_pred HHHHHHHhhcCCCeeEEEEccCcc----------------chh----hHHHHHHhcCC-CCCCceEEceEEEEEcCccCC
Q 008063 284 ADVYQWASYSEKMKIRVCLFFPLE----------------TWS----SLADLINKTGH-VLSDWVYLGGVKAFADGSLGS 342 (579)
Q Consensus 284 ~~~~~~~~~~~~~~i~v~~~~~~~----------------~~~----~~~~~~~~~~~-~~~~~~~~~g~k~~~dg~~~~ 342 (579)
....+...+. +++........ ... ...++...... ..... +++..
T Consensus 143 ~~~~~a~~~~---g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-----~~~~~------ 208 (456)
T 3ls9_A 143 DATIEAATDL---GIRFHAARSSMTLGKSEGGFCDDLFVEPVDRVVQHCLGLIDQYHEPEPFGM-----VRIAL------ 208 (456)
T ss_dssp HHHHHHHHHH---TCEEEEEECCCCCCGGGTCSSCGGGCCCHHHHHHHHHHHHHHHCCCSTTCS-----EEEEE------
T ss_pred HHHHHHHHHc---CCEEEEEccccccccccccCCccccccCHHHHHHHHHHHHHHhhCcCCCCc-----eEEEE------
Confidence 2223333222 33333321111 111 11111111000 00111 11110
Q ss_pred CcccccCCCCCCCCCCcccCCCHHHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHH----HHHHhcCCCCCCceEeec
Q 008063 343 NSALFHEPYADEPHNYGLQVMELESLLSMTMASDKSGLQVAIHAIGDRANDLVLDMYK----SVVVTTGKRDQRFRIEHA 418 (579)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~i~iH~~g~~~~~~~~~~~~----~~~~~~~~~~~~~~i~H~ 418 (579)
.... ...++++.++++++.|+++|+++++|+.+.......++.+. +.....+..+.+..+.|+
T Consensus 209 ---~~~~----------~~~~~~~~l~~~~~~a~~~g~~v~~H~~e~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~i~H~ 275 (456)
T 3ls9_A 209 ---GPCG----------VPYDKPELFEAFAQMAADYDVRLHTHFYEPLDAGMSDHLYGMTPWRFLEKHGWASDRVWLAHA 275 (456)
T ss_dssp ---CCCC----------TTTSCHHHHHHHHHHHHHHTCEEEEEECCTTHHHHHHHHHSSCHHHHHHHTTCSSTTEEEEEC
T ss_pred ---ecCC----------CCCCCHHHHHHHHHHHHHCCCCEEEEeCCCchHHHHHHHhCCCHHHHHHHcCCCCCCcEEEec
Confidence 0111 22378999999999999999999999997755555555443 345567777889999999
Q ss_pred cCCChhhHHHHhhCCcEEEecccccccchhHHHHhhChhhhhhhhhhHHHHHHCCCeeeecCCCCCC--CCCHHHHHHHH
Q 008063 419 QHLASGTAARFGDQGIVASMQPQHLLDDADSARKKLGVDRAERESYLFQSLLANNALLALGSDWPVA--DINPLCAIRTA 496 (579)
Q Consensus 419 ~~~~~~~~~~~~~~~i~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD~~~~--~~~~~~~~~~~ 496 (579)
.++++++++++++.++.+++||.++. .++ ...++++.++++|+++++|||++.+ ..+++.+++.+
T Consensus 276 ~~~~~~~~~~l~~~g~~~~~~p~s~~--------~l~-----~~~~~~~~~~~~Gv~v~lgtD~~~~~~~~~~~~~~~~~ 342 (456)
T 3ls9_A 276 VVPPREEIPEFADAGVAIAHLIAPDL--------RMG-----WGLAPIREYLDAGITVGFGTTGSASNDGGNLLGDLRLA 342 (456)
T ss_dssp CSCCGGGHHHHHHHTCEEEECHHHHH--------HTT-----CCCCCHHHHHHTTCEEEECCCCTTSSCCCCHHHHHHHH
T ss_pred cCCCHHHHHHHHHcCCEEEEChhHHh--------hcC-----CCcchHHHHHHCCCcEEEECCCCccCCCCCHHHHHHHH
Confidence 99999999999999999999999765 233 4566899999999999999998765 46899999988
Q ss_pred HcccCCCCCCCCCCCCCCCHHHHHHHHcHHHHHhcccCCccccccCCCcccEEEeCCCCCCCh------hhc----cCCe
Q 008063 497 MKRIPPGWDNAWIPSERISLTDALIAHTLSAARACFLENDVGSLSPGKIADFVILSTSSWEDF------AAE----VSAS 566 (579)
Q Consensus 497 ~~~~~~~~~~~~~~~~~ls~~~al~~~T~npA~~lgl~~~~G~I~~G~~ADlvvld~~~~~~~------~~~----~~~~ 566 (579)
+....... ....+.+++++++|+++|.|||+++|+++ +|+|++||.|||||||.+++... ..+ ...+
T Consensus 343 ~~~~~~~~--~~~~~~~~~~~~al~~~T~~~A~~lg~~~-~G~l~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~ 419 (456)
T 3ls9_A 343 ALAHRPAD--PNEPEKWLSARELLRMATRGSAECLGRPD-LGVLEEGRAADIACWRLDGVDRVGVHDPAIGLIMTGLSDR 419 (456)
T ss_dssp HHHTGGGS--TTCGGGSCCHHHHHHHTTHHHHHHTTCTT-SSCCSTTSBCCEEEEESCSGGGTTBSSHHHHHHHCCSBCC
T ss_pred HHHhcccc--ccccccCCCHHHHHHHHHHHHHHHhCCCC-CCccCCCCccCEEEEeCCCCccCCCCChHHHhhccCCCCC
Confidence 75432110 01123379999999999999999999998 99999999999999999986521 111 1357
Q ss_pred EEEEEECCEEeC
Q 008063 567 IEATYVSGVQAY 578 (579)
Q Consensus 567 v~~v~v~G~~v~ 578 (579)
|..||++|++||
T Consensus 420 v~~v~v~G~~v~ 431 (456)
T 3ls9_A 420 ASLVVVNGQVLV 431 (456)
T ss_dssp CSEEEETTEEEE
T ss_pred eeEEEECCEEEE
Confidence 999999999987
|
| >4dzh_A Amidohydrolase; adenosine deaminase, nysgrc, structural GENO YORK structural genomics research consortium; 1.55A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-38 Score=337.72 Aligned_cols=381 Identities=19% Similarity=0.198 Sum_probs=259.1
Q ss_pred CCccEEEEcCeEEeCCC--CCCeeeEEEEECCEEEEecChHHHHhhccCCCeEEeCCCCeeecccccccccccccCcccc
Q 008063 43 LEADLVVTNGVIFTGDD--SLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHFIPGGLQMA 120 (579)
Q Consensus 43 ~~~~~likn~~v~~~~~--~~~~~~~v~I~~GkI~~Ig~~~~~~~~~~~~~~viD~~g~~V~PG~ID~H~H~~~~~~~~~ 120 (579)
.+++++|+|++|+++++ ....+++|+|+||||++|++..+.+.. .++.++||++|++|+|||||+|+|+......
T Consensus 12 ~~~d~li~~~~v~~~~~~~~~~~~~~v~I~~g~I~~vg~~~~~~~~-~~~~~viD~~g~~v~PGlID~H~Hl~~~~~~-- 88 (472)
T 4dzh_A 12 EPCDLLIEAGYVVPIEPHAVVLEDHAVAVSNGVIVAVLPTADARVR-FAPARTVSRPDAALMPGLVNAHTHNPMTLLR-- 88 (472)
T ss_dssp EEEEEEEEEEEECCSSSTTCCEEEEEEEEETTEEEEEEEHHHHHHH-EEEEEEEEEEEEEEEECEEEEEECGGGGGGT--
T ss_pred CcCcEEEECCEEEecCCCCcEecceEEEEECCEEEEEeCchhhhhc-CCCCeEEeCCCcEEEECccccccChhhHHhc--
Confidence 35779999999998753 345788999999999999987665422 2467899999999999999999999765321
Q ss_pred ccccCCCCCHHHHHHHHHHHHHcCCCCCeEEEeCCCCCCCCCCCCChHHhhhhCCCCeEEEEeCCCchhhhcHHHHHHcC
Q 008063 121 RVKLRGVSHKDEFVRRVKEAVKNSKKGSWILGGGWNNDLWGGDLPMASWIDDITPHNPVWLSRMDGHMGLANSVALQLVG 200 (579)
Q Consensus 121 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~p~~~~ld~~~~~~p~~~~~~~~~~~~~n~~~~~~~g 200 (579)
+... ..+..+|+....
T Consensus 89 -----g~~~---------------------------------~~~l~~~l~~~~-------------------------- 104 (472)
T 4dzh_A 89 -----GVAD---------------------------------DLPLMVWLQQHI-------------------------- 104 (472)
T ss_dssp -----TSSC---------------------------------SCCHHHHHHHTH--------------------------
T ss_pred -----cccC---------------------------------CCCHHHHHHHhh--------------------------
Confidence 1110 111122222100
Q ss_pred CCCCCCCCCCCeEEeCCCCCcCEEEhHhHHHHhcccCCCCCHHHHHHHHHHHHHHHHhcCccEEEeCCcCCCCCccccch
Q 008063 201 ITNLSEDPNGGTIMKTSSGEPTGLLIDAAMKLILPWIPEVSVDERREALLRASNLALSRGVTTVVDFGRYYPGESVQLSW 280 (579)
Q Consensus 201 ~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Git~v~~~~~~~~~~~~~~~~ 280 (579)
... .....++++.+.........++++|+|++.+++. ..
T Consensus 105 ------------------------------~~~--~~~~~~~e~~~~~~~~~~~~~l~~GvTtv~d~~~---------~~ 143 (472)
T 4dzh_A 105 ------------------------------WPV--EAAVIGPEFVADGTTLAIAEMLRGGTTCVNENYF---------FA 143 (472)
T ss_dssp ------------------------------HHH--HHHHCSHHHHHHHHHHHHHHHHHTTEEEEEEECS---------CH
T ss_pred ------------------------------hhh--hhccCCHHHHHHHHHHHHHHHHhCCcEEEEEccc---------CH
Confidence 000 0001345788888888999999999999998752 11
Q ss_pred HHHHHHHHHHhhcCCCeeEEEEc-cCcc-----chhhHHH----HHHhcCCCCCCceEEceEEEEEcCccCCCcccccCC
Q 008063 281 EDFADVYQWASYSEKMKIRVCLF-FPLE-----TWSSLAD----LINKTGHVLSDWVYLGGVKAFADGSLGSNSALFHEP 350 (579)
Q Consensus 281 ~~~~~~~~~~~~~~~~~i~v~~~-~~~~-----~~~~~~~----~~~~~~~~~~~~~~~~g~k~~~dg~~~~~~~~~~~~ 350 (579)
. ...+.+.+.+ +...+... ...+ ..++..+ ...... ....+ ++.. ....+
T Consensus 144 ~---~~~~a~~~~g-~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i-----~~~~---------~~~~~ 203 (472)
T 4dzh_A 144 D---VQAAVYKQHG-FRALVGAVIIDFPTAWASSDDEYFARAGELHDQWR--DDPLI-----STAF---------APHAP 203 (472)
T ss_dssp H---HHHHHHHHTT-CEEEEEEEECSSCCSSCSSHHHHHHHHHHHHHHHT--TCSSE-----EEEE---------EECCT
T ss_pred H---HHHHHHHHhC-CeEEEEecccCCCcccccCHHHHHHHHHHHHHHhC--CCCce-----EEEE---------ecCCC
Confidence 1 2233333322 22222211 1111 1111111 111100 01122 1110 11222
Q ss_pred CCCCCCCCcccCCCHHHHHHHHHHHHHCCCeEEEEecch-HHHHHHHHHHH----HHHHhcCCCCCCceEeeccCCChhh
Q 008063 351 YADEPHNYGLQVMELESLLSMTMASDKSGLQVAIHAIGD-RANDLVLDMYK----SVVVTTGKRDQRFRIEHAQHLASGT 425 (579)
Q Consensus 351 ~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~i~iH~~g~-~~~~~~~~~~~----~~~~~~~~~~~~~~i~H~~~~~~~~ 425 (579)
+ .++++.++++++.|+++|+++.+|+.+. .++...++.+. +.....+..+.+..+.|+.++++++
T Consensus 204 ~----------~~~~~~l~~~~~~A~~~g~~v~iH~~e~~~~~~~~~~~~g~~~i~~~~~~g~~~~~~~~~H~~~l~~~~ 273 (472)
T 4dzh_A 204 Y----------TVNDANFERVRMLADQLDMPVHLHTHETAQEVADSVAQYGQRPLARLDRLGLVNDRLIAVHMTQLTEAE 273 (472)
T ss_dssp T----------TSCHHHHHHHHHHHHHHTCCEEEEESCCHHHHHHHHHHHSSCHHHHHHHHTCCSTTEEEEECCSCCHHH
T ss_pred C----------CCCHHHHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhCCCHHHHHHHcCCCCCCeEEEeccCCCHHH
Confidence 2 2688999999999999999999999855 44444444332 2344567778899999999999999
Q ss_pred HHHHhhCCcEEEecccccccchhHHHHhhChhhhhhhhhhHHHHHHCCCeeeecCCCCCC--CCCHHHHHHHHHcccCCC
Q 008063 426 AARFGDQGIVASMQPQHLLDDADSARKKLGVDRAERESYLFQSLLANNALLALGSDWPVA--DINPLCAIRTAMKRIPPG 503 (579)
Q Consensus 426 ~~~~~~~~i~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD~~~~--~~~~~~~~~~~~~~~~~~ 503 (579)
++++++.|+.+++||.++. .++ ....+++.+.++|+++++|||++.+ ..+++.+++.+.....
T Consensus 274 i~~l~~~g~~v~~~p~s~~--------~~~-----~~~~~~~~~~~~Gv~v~lgtD~~~~~~~~~~~~~~~~a~~~~~-- 338 (472)
T 4dzh_A 274 IHLCAERGVSVVHCPESNL--------KLA-----SGFCPACALQRASVNLAIGTDGCASNNDLDMFSENRTAAILAK-- 338 (472)
T ss_dssp HHHHHHHTCEEEECHHHHH--------HTT-----CCCCCHHHHHHTTCEEEECCCCTTSSCCCCHHHHHHHHHHHHH--
T ss_pred HHHHHHcCCEEEEChHHHH--------hcC-----CCCccHHHHHHCCCCEEEECCCCcCCCCCCHHHHHHHHHHHhh--
Confidence 9999999999999998764 233 4566899999999999999998754 5789999887754210
Q ss_pred CCCCCCCCCCCCHHHHHHHHcHHHHHhcccCCccccccCCCcccEEEeCCCCCC------Chhhc----cCCeEEEEEEC
Q 008063 504 WDNAWIPSERISLTDALIAHTLSAARACFLENDVGSLSPGKIADFVILSTSSWE------DFAAE----VSASIEATYVS 573 (579)
Q Consensus 504 ~~~~~~~~~~ls~~~al~~~T~npA~~lgl~~~~G~I~~G~~ADlvvld~~~~~------~~~~~----~~~~v~~v~v~ 573 (579)
.......+++++++|+++|.|||+++|+++++|+|++||.|||||+|.+++. ++..+ ...+|..||++
T Consensus 339 --~~~~~~~~l~~~~al~~~T~~~A~~lgl~~~~G~l~~G~~ADlvv~d~~~~~~~~~~~~~~~l~~~~~~~~V~~v~v~ 416 (472)
T 4dzh_A 339 --AVANDATALDAATTLRAATLGGARALGFGDRIGSIEVGKQADLVCVDLSALETQPLHHVLSQLIYAAGRHQVTDVWIA 416 (472)
T ss_dssp --HHHTCTTSSCHHHHHHHHTHHHHHHTTCTTTSSSCCTTSBCCEEEEECCSGGGCSCSCHHHHHHHTCCGGGEEEEEET
T ss_pred --hhcCCCCcCCHHHHHHHHHHHHHHHcCCCCCCcccCCCCcCCEEEEcCCCCccCCccCHHHHHhhcCCCCCceEEEEC
Confidence 0011345799999999999999999999998999999999999999998764 22333 25689999999
Q ss_pred CEEeC
Q 008063 574 GVQAY 578 (579)
Q Consensus 574 G~~v~ 578 (579)
|++||
T Consensus 417 G~~v~ 421 (472)
T 4dzh_A 417 GKPKL 421 (472)
T ss_dssp TEEEE
T ss_pred CEEEE
Confidence 99987
|
| >3lnp_A Amidohydrolase family protein OLEI01672_1_465; TIM barrel, beta-fold, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Oleispira antarctica} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-37 Score=332.16 Aligned_cols=381 Identities=23% Similarity=0.274 Sum_probs=256.6
Q ss_pred cCCCccEEEEcCeEEeCCCCC--------CeeeEEEEECCEEEEecChHHHHhhccCCCeEEeCCCCeeecccccccccc
Q 008063 41 TNLEADLVVTNGVIFTGDDSL--------LFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHF 112 (579)
Q Consensus 41 ~~~~~~~likn~~v~~~~~~~--------~~~~~v~I~~GkI~~Ig~~~~~~~~~~~~~~viD~~g~~V~PG~ID~H~H~ 112 (579)
+..+++++|+|++|+++++.. ..+++|+|+||||++|++..+ .. +++.++||++|++|+|||||+|+|+
T Consensus 19 ~~~~~~~li~~~~v~~~~~~~~~~~~~~~~~~~~v~i~~g~I~~vg~~~~-~~--~~~~~viD~~g~~v~PGlID~H~H~ 95 (468)
T 3lnp_A 19 PKAHADLRINSHWIIPIENTTDHNLVSNILIDHCLLIKDGIILAIEPQSS-CQ--IPATETLDLGQQVLMPGWVNAHGHA 95 (468)
T ss_dssp --CCEEEEEEEEEECCSSCC-----CCSCEEEEEEEEETTEEEEEEETTT-CC--CCEEEEEECCSEEEEECEEECSCCG
T ss_pred CCccccEEEECCEEEeecCCcccccCccEecceEEEEECCEEEEEeCCcc-cc--CCCCeEEeCCCcEEEeCeechhhCh
Confidence 345678999999999986543 468899999999999998654 11 3567899999999999999999999
Q ss_pred cccCccccccccCCCCCHHHHHHHHHHHHHcCCCCCeEEEeCCCCCCCCCCCCChHHhhhhCCCCeEEEEeCCCchhhhc
Q 008063 113 IPGGLQMARVKLRGVSHKDEFVRRVKEAVKNSKKGSWILGGGWNNDLWGGDLPMASWIDDITPHNPVWLSRMDGHMGLAN 192 (579)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~p~~~~ld~~~~~~p~~~~~~~~~~~~~n 192 (579)
..... +|... ..+...|+....
T Consensus 96 ~~~~~-------~g~~~---------------------------------~~~l~~wl~~~~------------------ 117 (468)
T 3lnp_A 96 AMSLF-------RGLAD---------------------------------DLPLMTWLQEHV------------------ 117 (468)
T ss_dssp GGGGG-------TTSSC---------------------------------SCCHHHHHHHTH------------------
T ss_pred hhhhh-------ccCcC---------------------------------CCCHHHHHHHhh------------------
Confidence 65322 11110 111222222100
Q ss_pred HHHHHHcCCCCCCCCCCCCeEEeCCCCCcCEEEhHhHHHHhcccCCCCCHHHHHHHHHHHHHHHHhcCccEEEeCCcCCC
Q 008063 193 SVALQLVGITNLSEDPNGGTIMKTSSGEPTGLLIDAAMKLILPWIPEVSVDERREALLRASNLALSRGVTTVVDFGRYYP 272 (579)
Q Consensus 193 ~~~~~~~g~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Git~v~~~~~~~~ 272 (579)
... .....++++.+.........++++|+|++.++...
T Consensus 118 --------------------------------------~~~--~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~d~~~~-- 155 (468)
T 3lnp_A 118 --------------------------------------WPA--EAQHVDEHFVKQGTELAIAEMIQSGTTTFADMYFY-- 155 (468)
T ss_dssp --------------------------------------HHH--HHHHCSHHHHHHHHHHHHHHHHHTTEEEEEECCSC--
T ss_pred --------------------------------------hhh--hhccCCHHHHHHHHHHHHHHHHhCCcEEEEEcccC--
Confidence 000 00013457788888889999999999999997421
Q ss_pred CCccccchHHHHHHHHHHhhcCCCeeEEEEcc-----Ccc---chhh----HHHHHHhcCCC---CCCceEEceEEEEEc
Q 008063 273 GESVQLSWEDFADVYQWASYSEKMKIRVCLFF-----PLE---TWSS----LADLINKTGHV---LSDWVYLGGVKAFAD 337 (579)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~-----~~~---~~~~----~~~~~~~~~~~---~~~~~~~~g~k~~~d 337 (579)
.. ...+...+.+ ++..... +.. ..++ ..++....... ....+ ++..
T Consensus 156 -------~~---~~~~~~~~~g---~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i-----~~~~- 216 (468)
T 3lnp_A 156 -------PQ---QSGEAALAAG---IRAVCFAPVLDFPTNYAQNADEYIRKAIECNDRFNNHPMNEQGLV-----QIGF- 216 (468)
T ss_dssp -------HH---HHHHHHHHHT---CEEEEEEEECSSCCSSCSSHHHHHHHHHHHHHHHHSCGGGTTCCE-----EEEE-
T ss_pred -------HH---HHHHHHHHcC---CeEEEeccccCCCcccccCHHHHHHHHHHHHHHhhcCCcccCceE-----EEEE-
Confidence 11 2222222222 3333211 110 1111 11111110000 00111 1110
Q ss_pred CccCCCcccccCCCCCCCCCCcccCCCHHHHHHHHHHHHHCCCeEEEEecch-HHHHHHHHHHH----HHHHhcCCCCCC
Q 008063 338 GSLGSNSALFHEPYADEPHNYGLQVMELESLLSMTMASDKSGLQVAIHAIGD-RANDLVLDMYK----SVVVTTGKRDQR 412 (579)
Q Consensus 338 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~i~iH~~g~-~~~~~~~~~~~----~~~~~~~~~~~~ 412 (579)
....+ ..++++.++++++.|+++|+++++|+.+. .++...++.+. +.....+..+.+
T Consensus 217 --------~~~~~----------~~~~~~~l~~~~~~A~~~g~~v~~H~~e~~~~~~~~~~~~g~~~i~~~~~~g~l~~~ 278 (468)
T 3lnp_A 217 --------GPHAP----------YTVSDEPLKEITMLSDQLDMPVQIHLHETDFEVSESLETFNKRPTQRLADIGFLNER 278 (468)
T ss_dssp --------EECCT----------TTSCHHHHHHHHHHHHHHTCCEEEEESCSHHHHHHHHHHHSSCHHHHHHHTTCCSTT
T ss_pred --------EcCCC----------CCCCHHHHHHHHHHHHHcCCcEEEEeCCCHHHHHHHHHHhCCCHHHHHHHcCCCCCC
Confidence 01111 23688999999999999999999999866 45555554332 234556777889
Q ss_pred ceEeeccCCChhhHHHHhhCCcEEEecccccccchhHHHHhhChhhhhhhhhhHHHHHHCCCeeeecCCCCCC--CCCHH
Q 008063 413 FRIEHAQHLASGTAARFGDQGIVASMQPQHLLDDADSARKKLGVDRAERESYLFQSLLANNALLALGSDWPVA--DINPL 490 (579)
Q Consensus 413 ~~i~H~~~~~~~~~~~~~~~~i~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD~~~~--~~~~~ 490 (579)
..+.|+.++++++++++++.|+.+++||.++. .++ ...++++.+++.|+++++|||++.. ..+++
T Consensus 279 ~~~~H~~~~~~~~~~~l~~~g~~v~~~p~s~~--------~~~-----~~~~~~~~~~~~Gv~v~lgtD~~~~~~~~~~~ 345 (468)
T 3lnp_A 279 VSCVHMTQVDDGDIKILQKTGASIIHCPESNL--------KLA-----SGFCPIAKLSAANIPLAIGTDGAASNNDLDMF 345 (468)
T ss_dssp EEEEECCSCCHHHHHHHHHHCCEEEECHHHHH--------HTT-----CCCCCHHHHHHTTCCEEECCCCTTSSCCCCHH
T ss_pred eEEEeccCCCHHHHHHHHhcCCEEEEChhhhh--------hcC-----CCCCCHHHHHHCCCeEEEECCCCcCCCCCCHH
Confidence 99999999999999999999999999998764 223 4566899999999999999998765 47899
Q ss_pred HHHHHHHcccCCCCCCCCCCCCCCCHHHHHHHHcHHHHHhcccCCccccccCCCcccEEEeCCCCCC--C----hhhc--
Q 008063 491 CAIRTAMKRIPPGWDNAWIPSERISLTDALIAHTLSAARACFLENDVGSLSPGKIADFVILSTSSWE--D----FAAE-- 562 (579)
Q Consensus 491 ~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~npA~~lgl~~~~G~I~~G~~ADlvvld~~~~~--~----~~~~-- 562 (579)
.+++.++..... ......+++++++|+++|.|||+++|+++++|+|++||.|||||||.+++. + +..+
T Consensus 346 ~~~~~~~~~~~~----~~~~~~~l~~~~al~~~T~~~A~~lg~~~~~G~l~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~ 421 (468)
T 3lnp_A 346 SETKTAALLAKG----VSQDASAIPAIEALTMATLGGARALGIDDITGSLKPGKAADIQAIDLNTLSSQPVFDPVSHMVY 421 (468)
T ss_dssp HHHHHHHHHHHH----HHTCTTSSCHHHHHHHHTHHHHHHTTCTTTSSSCCTTSBCCEEEEECCSGGGCSCSCHHHHHHH
T ss_pred HHHHHHHHHhhh----ccCCCCcCCHHHHHHHHHHHHHHHhCCCCCccccCCCCcCCEEEEeCCCCccCCccCHHHHhhc
Confidence 998877531100 001245799999999999999999999998999999999999999999754 1 1121
Q ss_pred --cCCeEEEEEECCEEeC
Q 008063 563 --VSASIEATYVSGVQAY 578 (579)
Q Consensus 563 --~~~~v~~v~v~G~~v~ 578 (579)
...+|..||++|++||
T Consensus 422 ~~~~~~v~~v~v~G~~v~ 439 (468)
T 3lnp_A 422 CTKSTQVSHVWVNGRCLL 439 (468)
T ss_dssp SCCGGGEEEEEETTEEEE
T ss_pred cCCCCCceEEEECCEEEE
Confidence 2468999999999997
|
| >4dyk_A Amidohydrolase; adenosine deaminase, nysgrc, structural GENO PSI-biology, NEW YORK structural genomics research consorti hydrolase; 2.00A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-38 Score=333.28 Aligned_cols=378 Identities=20% Similarity=0.232 Sum_probs=257.5
Q ss_pred CCccEEEEcCeEEeCC--CCCCeeeEEEEECCEEEEecChHHHHhhccCCCeEEeCCCCeeecccccccccccccCcccc
Q 008063 43 LEADLVVTNGVIFTGD--DSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHFIPGGLQMA 120 (579)
Q Consensus 43 ~~~~~likn~~v~~~~--~~~~~~~~v~I~~GkI~~Ig~~~~~~~~~~~~~~viD~~g~~V~PG~ID~H~H~~~~~~~~~ 120 (579)
.+++++|+|++|++++ +....+++|+|+||||++|++..+... +++.++||++|++|+|||||+|+|+.....
T Consensus 6 ~~~~~li~~~~v~~~~~~~~~~~~~~v~i~~g~I~~ig~~~~~~~--~~~~~viD~~g~~v~PG~ID~H~H~~~~~~--- 80 (451)
T 4dyk_A 6 NPFDLLLLPTWIVPVEPAGVVLRDHALGIRDGQIALVAPREQAMR--HGATEIRELPGMLLAPGLVNAHGHSAMSLF--- 80 (451)
T ss_dssp CCEEEEEEEEEECCSSSTTCCEESEEEEEETTEEEEEEEHHHHTT--TCEEEEEEEEEEEEEECEEECCCCGGGGGG---
T ss_pred chhcEEEECCEEEeeCCCCcEEeccEEEEECCEEEEEeCcccccc--CCCCeEEeCCCCEEeecccchhhChhhHHh---
Confidence 4678999999999965 334467899999999999998766522 356789999999999999999999965422
Q ss_pred ccccCCCCCHHHHHHHHHHHHHcCCCCCeEEEeCCCCCCCCCCCCChHHhhhhCCCCeEEEEeCCCchhhhcHHHHHHcC
Q 008063 121 RVKLRGVSHKDEFVRRVKEAVKNSKKGSWILGGGWNNDLWGGDLPMASWIDDITPHNPVWLSRMDGHMGLANSVALQLVG 200 (579)
Q Consensus 121 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~p~~~~ld~~~~~~p~~~~~~~~~~~~~n~~~~~~~g 200 (579)
+|... ..|...|+....
T Consensus 81 ----~g~~~---------------------------------~~~l~~wl~~~~-------------------------- 97 (451)
T 4dyk_A 81 ----RGLAD---------------------------------DLPLMTWLQDHI-------------------------- 97 (451)
T ss_dssp ----TTSSC---------------------------------SSCHHHHHHHTH--------------------------
T ss_pred ----ccCCC---------------------------------CCCHHHHHHHhh--------------------------
Confidence 11111 112222222200
Q ss_pred CCCCCCCCCCCeEEeCCCCCcCEEEhHhHHHHhcccCCCCCHHHHHHHHHHHHHHHHhcCccEEEeCCcCCCCCccccch
Q 008063 201 ITNLSEDPNGGTIMKTSSGEPTGLLIDAAMKLILPWIPEVSVDERREALLRASNLALSRGVTTVVDFGRYYPGESVQLSW 280 (579)
Q Consensus 201 ~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Git~v~~~~~~~~~~~~~~~~ 280 (579)
... .....++++.+.....+...++++|+|++.++... .
T Consensus 98 ------------------------------~~~--~~~~~~~e~~~~~~~~~~~~~l~~GvTtv~d~~~~---------~ 136 (451)
T 4dyk_A 98 ------------------------------WPA--EGQWVSEDFIRDGTELAIAEQVKGGITCFSDMYFY---------P 136 (451)
T ss_dssp ------------------------------HHH--HHHHCSHHHHHHHHHHHHHHHHHTTEEEEEEECSC---------H
T ss_pred ------------------------------hhh--hhccCCHHHHHHHHHHHHHHHHhCCcEEEEEcccC---------H
Confidence 000 00013457778888889999999999999987421 1
Q ss_pred HHHHHHHHHHhhcCCCeeEEEEc---cCcc-----chhh----HHHHHHhcCCCCCCceEEceEEEEEcCccCCCccccc
Q 008063 281 EDFADVYQWASYSEKMKIRVCLF---FPLE-----TWSS----LADLINKTGHVLSDWVYLGGVKAFADGSLGSNSALFH 348 (579)
Q Consensus 281 ~~~~~~~~~~~~~~~~~i~v~~~---~~~~-----~~~~----~~~~~~~~~~~~~~~~~~~g~k~~~dg~~~~~~~~~~ 348 (579)
. ...+.+.+.+ ++.... ...+ ..++ ..++..... .... +++.. ...
T Consensus 137 ~---~~~~a~~~~g---~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-----v~~~~---------~~~ 194 (451)
T 4dyk_A 137 Q---AICGVVHDSG---VRAQVAIPVLDFPIPGARDSAEAIRQGMALFDDLK--HHPR-----IRIAF---------GPH 194 (451)
T ss_dssp H---HHHHHHHHHT---CEEEEEEEECSSCBTTBSSHHHHHHHHHHHHHHTT--TCSS-----EEEEE---------EEC
T ss_pred H---HHHHHHHHcC---CeEEEEchhhCCCCccccCHHHHHHHHHHHHHHhc--CCCc-----eEEEE---------ecC
Confidence 1 2222222222 332221 1111 1111 111111100 1111 11110 111
Q ss_pred CCCCCCCCCCcccCCCHHHHHHHHHHHHHCCCeEEEEecch-HHHHHHHHHHH----HHHHhcCCCCCCceEeeccCCCh
Q 008063 349 EPYADEPHNYGLQVMELESLLSMTMASDKSGLQVAIHAIGD-RANDLVLDMYK----SVVVTTGKRDQRFRIEHAQHLAS 423 (579)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~i~iH~~g~-~~~~~~~~~~~----~~~~~~~~~~~~~~i~H~~~~~~ 423 (579)
.+ ..++++.++++++.|+++|+++++|+.+. .++...++.+. +.....+..+.+..+.|+.++++
T Consensus 195 ~~----------~~~~~~~l~~~~~~A~~~g~~v~~H~~e~~~~~~~~~~~~g~~~i~~~~~~g~~~~~~~~~H~~~~~~ 264 (451)
T 4dyk_A 195 AP----------YTVSDDKLEQILVLTEELDASIQMHVHETAFEVEQAMERNGERPLARLHRLGLLGPRFQAVHMTQVDN 264 (451)
T ss_dssp CG----------GGSCHHHHHHHHHHHHHHTCCEEEEESCCHHHHHHHHHHHSSCHHHHHHHTTCCSTTEEEEECCCCCH
T ss_pred CC----------CccCHHHHHHHHHHHHHcCCcEEEEeCCCHHHHHHHHHHhCCCHHHHHHHCCCCCCCeEEEECCCCCH
Confidence 22 23688999999999999999999999866 34555554332 23455677788999999999999
Q ss_pred hhHHHHhhCCcEEEecccccccchhHHHHhhChhhhhhhhhhHHHHHHCCCeeeecCCCCCC--CCCHHHHHHHHHcccC
Q 008063 424 GTAARFGDQGIVASMQPQHLLDDADSARKKLGVDRAERESYLFQSLLANNALLALGSDWPVA--DINPLCAIRTAMKRIP 501 (579)
Q Consensus 424 ~~~~~~~~~~i~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD~~~~--~~~~~~~~~~~~~~~~ 501 (579)
++++++++.|+.+++||.++. .++ ...++++.++++|+++++|||++.. ..+++.+++.++....
T Consensus 265 ~~~~~l~~~g~~v~~~p~s~~--------~~~-----~~~~~~~~~~~~Gv~v~lgtD~~~~~~~~~~~~~~~~~~~~~~ 331 (451)
T 4dyk_A 265 DDLAMLVETNSSVIHCPESNL--------KLA-----SGFCPVEKLWQAGVNVAIGTDGAASNNDLDLLGETRTAALLAK 331 (451)
T ss_dssp HHHHHHHHHTCEEEECHHHHH--------HTT-----CCCCCHHHHHHHTCCEEECCCCGGGSSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCEEEEChhhhh--------hcc-----CCcccHHHHHhCCCeEEEECCCCccCCCCCHHHHHHHHHHHhh
Confidence 999999999999999998764 222 4566899999999999999998754 4689999987762110
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHcHHHHHhcccCCccccccCCCcccEEEeCCCCCC--C----hhhc----cCCeEEEEE
Q 008063 502 PGWDNAWIPSERISLTDALIAHTLSAARACFLENDVGSLSPGKIADFVILSTSSWE--D----FAAE----VSASIEATY 571 (579)
Q Consensus 502 ~~~~~~~~~~~~ls~~~al~~~T~npA~~lgl~~~~G~I~~G~~ADlvvld~~~~~--~----~~~~----~~~~v~~v~ 571 (579)
. ......+++++++|+++|.|||+++|+++++|+|++||.|||||+|.+++. + +..+ ...+|..||
T Consensus 332 ~----~~~~~~~~~~~~al~~~T~~~A~~lg~~~~~G~l~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~v~~v~ 407 (451)
T 4dyk_A 332 A----VYGQATALDAHRALRMATLNGARALGLERLIGSLEAGKAADLVAFDLSGLAQQPVYDPVSQLIYASGRDCVRHVW 407 (451)
T ss_dssp H----HHTCTTSSCHHHHHHHHTHHHHHHHTCTTTSSSCCTTSBCCEEEEECCSGGGCSCSCHHHHHHHHCCGGGEEEEE
T ss_pred h----hcCCCCCCCHHHHHHHHHHHHHHHcCCCCCCcCcCCCCcCCEEEEeCCCCccCCCCCHHHHhhccCCCCCccEEE
Confidence 0 001245799999999999999999999998999999999999999999764 1 1222 245899999
Q ss_pred ECCEEeC
Q 008063 572 VSGVQAY 578 (579)
Q Consensus 572 v~G~~v~ 578 (579)
++|++||
T Consensus 408 v~G~~v~ 414 (451)
T 4dyk_A 408 VGGRQLL 414 (451)
T ss_dssp ETTEEEE
T ss_pred ECCEEEE
Confidence 9999987
|
| >4f0r_A 5-methylthioadenosine/S-adenosylhomocysteine DEAM; structural genomics, PSI-biology; HET: MSE MTA; 1.80A {Chromobacterium violaceum} PDB: 4f0s_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-37 Score=330.72 Aligned_cols=380 Identities=18% Similarity=0.212 Sum_probs=256.9
Q ss_pred CCccEEEEcCeEEeCCC--CCCeeeEEEEECCEEEEecChHHHHhhccCCCeEEeCCCCeeecccccccccccccCcccc
Q 008063 43 LEADLVVTNGVIFTGDD--SLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHFIPGGLQMA 120 (579)
Q Consensus 43 ~~~~~likn~~v~~~~~--~~~~~~~v~I~~GkI~~Ig~~~~~~~~~~~~~~viD~~g~~V~PG~ID~H~H~~~~~~~~~ 120 (579)
.+++++|+|++|+++++ ....+++|+|+||||++|++..+.+. .++.++||++|++|+|||||+|+|+.....
T Consensus 4 ~~~~~li~~~~v~~~~~~~~~~~~~~v~i~~g~I~~vg~~~~~~~--~~~~~viD~~g~~v~PGlID~H~Hl~~~~~--- 78 (447)
T 4f0r_A 4 SRYEKIISARWIITVETDGEVLENHAIAIRDGKIAAIIPAADAAG--LEADERLELPDHVLMPGLINLHGHSAMSLL--- 78 (447)
T ss_dssp -CEEEEEEEEEEECCSSTTCEEEEEEEEEETTEEEEEEEHHHHTT--SCEEEEEEEEEEEEEECEEEEEECGGGGGG---
T ss_pred CcccEEEECCEEEeeCCCCcEeeceEEEEECCEEEEEeccccccc--CCCCeEEeCCCcEEeeCccchhhChhhHhh---
Confidence 35789999999998754 33468899999999999999776542 356789999999999999999999965322
Q ss_pred ccccCCCCCHHHHHHHHHHHHHcCCCCCeEEEeCCCCCCCCCCCCChHHhhhhCCCCeEEEEeCCCchhhhcHHHHHHcC
Q 008063 121 RVKLRGVSHKDEFVRRVKEAVKNSKKGSWILGGGWNNDLWGGDLPMASWIDDITPHNPVWLSRMDGHMGLANSVALQLVG 200 (579)
Q Consensus 121 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~p~~~~ld~~~~~~p~~~~~~~~~~~~~n~~~~~~~g 200 (579)
++... ..+..+|+....
T Consensus 79 ----~g~~~---------------------------------~~~~~~wl~~~~-------------------------- 95 (447)
T 4f0r_A 79 ----RGLAD---------------------------------DKALMDWLTNYI-------------------------- 95 (447)
T ss_dssp ----TTSSC---------------------------------SSCHHHHHHHTH--------------------------
T ss_pred ----ccCCC---------------------------------CCCHHHHHHHhh--------------------------
Confidence 11110 111122222100
Q ss_pred CCCCCCCCCCCeEEeCCCCCcCEEEhHhHHHHhcccCCCCCHHHHHHHHHHHHHHHHhcCccEEEeCCcCCCCCccccch
Q 008063 201 ITNLSEDPNGGTIMKTSSGEPTGLLIDAAMKLILPWIPEVSVDERREALLRASNLALSRGVTTVVDFGRYYPGESVQLSW 280 (579)
Q Consensus 201 ~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Git~v~~~~~~~~~~~~~~~~ 280 (579)
... ..+..++++...........++++|+|++.++... .
T Consensus 96 ------------------------------~~~--~~~~~~~e~~~~~~~~~~~~~l~~GvTtv~d~~~~---------~ 134 (447)
T 4f0r_A 96 ------------------------------WPT--EGKHVHDDFVFDGSLLAMGEMIRGGTTTINDMYFY---------N 134 (447)
T ss_dssp ------------------------------HHH--HHHHCSHHHHHHHHHHHHHHHHHTTEEEEEECBSC---------H
T ss_pred ------------------------------hhh--hhccCCHHHHHHHHHHHHHHHHhCCcEEEEEcccC---------H
Confidence 000 00123457777888888999999999999997421 1
Q ss_pred HHHHHHHHHHhhcCCCeeEEEEcc-----Ccc---chhhHHHHHHh-cCC-CCCCceEEceEEEEEcCccCCCcccccCC
Q 008063 281 EDFADVYQWASYSEKMKIRVCLFF-----PLE---TWSSLADLINK-TGH-VLSDWVYLGGVKAFADGSLGSNSALFHEP 350 (579)
Q Consensus 281 ~~~~~~~~~~~~~~~~~i~v~~~~-----~~~---~~~~~~~~~~~-~~~-~~~~~~~~~g~k~~~dg~~~~~~~~~~~~ 350 (579)
. ...+.+.+.+ ++..... +.. ..++..+.... ... ..... +++.. ....+
T Consensus 135 ~---~~~~~~~~~g---~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----i~~~~---------~~~~~ 194 (447)
T 4f0r_A 135 A---AVARAGLASG---MRTFVGCSILEFPTNYASNADDYIAKGMAERSQFLGEDL-----LTFTL---------APHAP 194 (447)
T ss_dssp H---HHHHHHHHHT---CEEEEEEEECSSCCSSCSSHHHHHHHHHHHHHTTTTCTT-----EEEEE---------EECCG
T ss_pred H---HHHHHHHHcC---CeEEEEchhcCCCcccccCHHHHHHHHHHHHHHhcCCCc-----eEEEE---------ecCCC
Confidence 1 2222222222 3333211 111 11111111111 000 01112 22211 01111
Q ss_pred CCCCCCCCcccCCCHHHHHHHHHHHHHCCCeEEEEecch-HHHHHHHHHH----HHHHHhcCCCCCCceEeeccCCChhh
Q 008063 351 YADEPHNYGLQVMELESLLSMTMASDKSGLQVAIHAIGD-RANDLVLDMY----KSVVVTTGKRDQRFRIEHAQHLASGT 425 (579)
Q Consensus 351 ~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~i~iH~~g~-~~~~~~~~~~----~~~~~~~~~~~~~~~i~H~~~~~~~~ 425 (579)
..++++.++++++.|++.|+++.+|+.+. .++...++.+ -+.....+..+.+..+.|+.++++++
T Consensus 195 ----------~~~~~~~l~~~~~~A~~~g~~v~iH~~~~~~~~~~~~~~~g~~~i~~~~~~g~~~~~~~~~H~~~~~~~~ 264 (447)
T 4f0r_A 195 ----------YTVSDDTFRKVVTLAEQEDMLIHCHIHETADEVNNSVKEHGQRPLARLQRLGLLSPRLVAAHMVHLNDAE 264 (447)
T ss_dssp ----------GGSCHHHHHHHHHHHHHHTCCEEEEESCCHHHHHHHHHHHSSCHHHHHHHHTCCSTTEEEEECCSCCHHH
T ss_pred ----------CCCCHHHHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHHcCCCHHHHHHHcCCCCCCcEEEeccCCCHHH
Confidence 23688999999999999999999999876 5555555433 12344567778899999999999999
Q ss_pred HHHHhhCCcEEEecccccccchhHHHHhhChhhhhhhhhhHHHHHHCCCeeeecCCCCCC--CCCHHHHHHHHHcccCCC
Q 008063 426 AARFGDQGIVASMQPQHLLDDADSARKKLGVDRAERESYLFQSLLANNALLALGSDWPVA--DINPLCAIRTAMKRIPPG 503 (579)
Q Consensus 426 ~~~~~~~~i~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD~~~~--~~~~~~~~~~~~~~~~~~ 503 (579)
++++++.|+.+++||.++. .++ ....+++.+.+.|+++++|||++.. ..+++.+++.+......
T Consensus 265 ~~~~~~~g~~~~~~p~~~~--------~~~-----~~~~~~~~~~~~Gv~v~lgTD~~~~~~~~~~~~~~~~~~~~~~~- 330 (447)
T 4f0r_A 265 VELAARHGLSTAHNPASNM--------KLA-----SGISPVSKLMDAGVAVGIGTDGAASNNKLDMLAETRLAALLAKV- 330 (447)
T ss_dssp HHHHHHHTCEEEECHHHHH--------HTT-----CCCCCHHHHHHTTCEEEECCCCGGGTCCCCHHHHHHHHHHHHHH-
T ss_pred HHHHHHcCCEEEECchhhh--------hcC-----CCCCcHHHHHHCCCcEEEeCCCCcCCCCCCHHHHHHHHHHHhhh-
Confidence 9999999999999998764 222 4566899999999999999998755 46889888876521100
Q ss_pred CCCCCCCCCCCCHHHHHHHHcHHHHHhcccCCccccccCCCcccEEEeCCCCCC--C----hhhc----cCCeEEEEEEC
Q 008063 504 WDNAWIPSERISLTDALIAHTLSAARACFLENDVGSLSPGKIADFVILSTSSWE--D----FAAE----VSASIEATYVS 573 (579)
Q Consensus 504 ~~~~~~~~~~ls~~~al~~~T~npA~~lgl~~~~G~I~~G~~ADlvvld~~~~~--~----~~~~----~~~~v~~v~v~ 573 (579)
......+++++++++++|.|||+++|+++++|+|++||.|||||||.+++. + +..+ ...+|..||++
T Consensus 331 ---~~~~~~~l~~~~al~~~T~n~A~~lg~~~~~G~l~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~ 407 (447)
T 4f0r_A 331 ---GTLDPTSVPAAAAIRMATLNGARALGIADKVGSVKVGKQADLIALDLAQLETAPAFDPISHVVYAAGREQVSHVWVK 407 (447)
T ss_dssp ---HHTCTTSSCHHHHHHHHTHHHHHHTTCTTTSSSCCTTSBCCEEEEECCSGGGCSCSCHHHHHHHTCCGGGEEEEEET
T ss_pred ---hccCCCCCCHHHHHHHHHHHHHHHhCCCCCccccCCCCcCCEEEEeCCCCCcCCCcChHHHheecCCCCCceEEEEC
Confidence 001245799999999999999999999998999999999999999999754 1 1111 24689999999
Q ss_pred CEEeC
Q 008063 574 GVQAY 578 (579)
Q Consensus 574 G~~v~ 578 (579)
|++||
T Consensus 408 G~~v~ 412 (447)
T 4f0r_A 408 GRALM 412 (447)
T ss_dssp TEEEE
T ss_pred CEEEE
Confidence 99987
|
| >4aql_A Guanine deaminase; hydrolase, purine metabolism; HET: TXC; 1.99A {Homo sapiens} PDB: 2uz9_A* 3e0l_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-35 Score=317.40 Aligned_cols=203 Identities=19% Similarity=0.210 Sum_probs=159.8
Q ss_pred CCHHHHHHHHHHHHHCCCeEEEEecch-HHHHHHHHHH------HHHHHhcCCCCCCceEeeccCCChhhHHHHhhCCcE
Q 008063 363 MELESLLSMTMASDKSGLQVAIHAIGD-RANDLVLDMY------KSVVVTTGKRDQRFRIEHAQHLASGTAARFGDQGIV 435 (579)
Q Consensus 363 ~~~~~l~~~~~~a~~~g~~i~iH~~g~-~~~~~~~~~~------~~~~~~~~~~~~~~~i~H~~~~~~~~~~~~~~~~i~ 435 (579)
++++.++++++.|+++|+++++|+.+. .++..+.+.+ .+.....+..+.+..+.|+.++++++++++++.++.
T Consensus 240 ~s~e~l~~~~~~A~~~g~~v~~H~~e~~~e~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~H~~~l~~~~~~~l~~~g~~ 319 (476)
T 4aql_A 240 CSETLMGELGNIAKTRDLHIQSHISENRDEVEAVKNLYPSYKNYTSVYDKNNLLTNKTVMAHGCYLSAEELNVFHERGAS 319 (476)
T ss_dssp SCHHHHHHHHHHHHHTTCCEEEEESCSHHHHHHHHHHCTTSSSHHHHHHTTTCCSTTEEEEECTTCCHHHHHHHHHHTCE
T ss_pred CCHHHHHHHHHHHHHcCCceEEEecCCHHHHHHHHHHhCCCCCHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHHcCCE
Confidence 789999999999999999999999865 3455555432 234556777788999999999999999999999999
Q ss_pred EEecccccccchhHHHHhhChhhhhhhhhhHHHHHHCCCeeeecCCCCC-CCCCHHHHHHHHHcccCCCCCCCCCCCCCC
Q 008063 436 ASMQPQHLLDDADSARKKLGVDRAERESYLFQSLLANNALLALGSDWPV-ADINPLCAIRTAMKRIPPGWDNAWIPSERI 514 (579)
Q Consensus 436 ~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 514 (579)
+++||.++. .++ ....+++.+++.|+++++|||.+. .+.+++.+++.++...... ........++
T Consensus 320 v~~~P~sn~--------~l~-----~g~~p~~~~~~~Gv~v~lGtD~~~~~~~~~~~~~~~a~~~~~~~-~~~~~~~~~l 385 (476)
T 4aql_A 320 IAHCPNSNL--------SLS-----SGFLNVLEVLKHEVKIGLGTDVAGGYSYSMLDAIRRAVMVSNIL-LINKVNEKSL 385 (476)
T ss_dssp EEECHHHHH--------HTT-----CCCCCHHHHHHTTCEEEECCCTTTSSCCCHHHHHHHHHHHHHHH-HHTTSSSSCC
T ss_pred EEECchhhh--------hhC-----cchHHHHHHHHCCCcEEEeCCCCCCCCCCHHHHHHHHHHHHhhh-hcccCCCCcC
Confidence 999999875 333 456689999999999999999763 3578999988776421000 0000134579
Q ss_pred CHHHHHHHHcHHHHHhcccCCccccccCCCcccEEEeCCC----CCCC-------------hhhc----cCCeEEEEEEC
Q 008063 515 SLTDALIAHTLSAARACFLENDVGSLSPGKIADFVILSTS----SWED-------------FAAE----VSASIEATYVS 573 (579)
Q Consensus 515 s~~~al~~~T~npA~~lgl~~~~G~I~~G~~ADlvvld~~----~~~~-------------~~~~----~~~~v~~v~v~ 573 (579)
+++++|+++|.|||++||+++++|+|++||.|||||+|.+ |+.. +..+ ...+|..||++
T Consensus 386 ~~~~al~~aT~~~A~~lgl~~~~G~l~~G~~ADlvv~d~~~~~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~V~~v~v~ 465 (476)
T 4aql_A 386 TLKEVFRLATLGGSQALGLDGEIGNFEVGKEFDAILINPKASDSPIDLFYGDFFGDISEAVIQKFLYLGDDRNIEEVYVG 465 (476)
T ss_dssp CHHHHHHHHTHHHHHHTTCTTTSSSCCTTSBCCEEEECTTCTTCSCCCCTHHHHSSSTTHHHHHHHHHCCGGGEEEEEET
T ss_pred CHHHHHHHHHHHHHHHhCCCCCcceeCCCCCCCEEEEcCCCCCCccccccccccCCchhcHHHHHhhcCCCCCccEEEEC
Confidence 9999999999999999999998999999999999999988 3321 1111 13479999999
Q ss_pred CEEeCC
Q 008063 574 GVQAYP 579 (579)
Q Consensus 574 G~~v~~ 579 (579)
||+||+
T Consensus 466 G~~v~~ 471 (476)
T 4aql_A 466 GKQVVP 471 (476)
T ss_dssp TEEEEC
T ss_pred CEEEec
Confidence 999974
|
| >2qs8_A XAA-Pro dipeptidase; amidohydrolase, TIM barrel, protein structure initiative, PSI-2, NYSGXRC, structural genomics; 2.33A {Alteromonas macleodii} SCOP: b.92.1.9 c.1.9.18 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-35 Score=312.85 Aligned_cols=362 Identities=18% Similarity=0.189 Sum_probs=242.9
Q ss_pred CCccEEEEcCeEEeCCCC-CCeeeEEEEECCEEEEecChHHHHhhccCCC--eEEeCCCCeeecccccccccccccCccc
Q 008063 43 LEADLVVTNGVIFTGDDS-LLFADSMAIKNGRIVSVGNYSAVQQLAADGT--NVLNLQGKVVVPGFIDSHVHFIPGGLQM 119 (579)
Q Consensus 43 ~~~~~likn~~v~~~~~~-~~~~~~v~I~~GkI~~Ig~~~~~~~~~~~~~--~viD~~g~~V~PG~ID~H~H~~~~~~~~ 119 (579)
+.++++|+|++|+++++. ...+++|+|+||||++|++.. . +++. ++||++|++|+|||||+|+|+......
T Consensus 5 ~~~~~li~n~~v~~~~~~~~~~~~~v~I~~g~I~~vg~~~--~---~~~~~~~viD~~g~~v~PGlID~H~H~~~~~~~- 78 (418)
T 2qs8_A 5 VDSKTLIHAGKLIDGKSDQVQSRISIVIDGNIISDIKKGF--I---SSNDFEDYIDLRDHTVLPGLMDMHVHFGQEYQS- 78 (418)
T ss_dssp --CCEEEEEEEECCSSCSSCEEEEEEEEETTEEEEEEESC--C---CCTTSSEEEEEEEEEEEECEEEEEECTTCCCCC-
T ss_pred CCccEEEEeeEEEeCCCCccccCcEEEEECCEEEEEeCCC--C---CCCCcceEEECCCCEECCCeeeeeeccccCCCC-
Confidence 456799999999998765 335679999999999998753 1 2456 899999999999999999998653210
Q ss_pred cccccCCCCCHHHHHHHHHHHHHcCCCCCeEEEeCCCCCCCCCCCCChHHhhhhCCCCeEEEEeCCCchhhhcHHHHHHc
Q 008063 120 ARVKLRGVSHKDEFVRRVKEAVKNSKKGSWILGGGWNNDLWGGDLPMASWIDDITPHNPVWLSRMDGHMGLANSVALQLV 199 (579)
Q Consensus 120 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~p~~~~ld~~~~~~p~~~~~~~~~~~~~n~~~~~~~ 199 (579)
..| +.
T Consensus 79 ---------------------------------~~~---------------~~--------------------------- 83 (418)
T 2qs8_A 79 ---------------------------------KAQ---------------AP--------------------------- 83 (418)
T ss_dssp ---------------------------------TTT---------------SC---------------------------
T ss_pred ---------------------------------Cch---------------hh---------------------------
Confidence 000 00
Q ss_pred CCCCCCCCCCCCeEEeCCCCCcCEEEhHhHHHHhcccCCCCCHHHHHHHHHHHHHHHHhcCccEEEeCCcCCCCCccccc
Q 008063 200 GITNLSEDPNGGTIMKTSSGEPTGLLIDAAMKLILPWIPEVSVDERREALLRASNLALSRGVTTVVDFGRYYPGESVQLS 279 (579)
Q Consensus 200 g~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Git~v~~~~~~~~~~~~~~~ 279 (579)
+ ..++++.........+.++++|+|++.+++... .
T Consensus 84 -------------------------------------~-~~~~~~~~~~~~~~~~~~l~~GvTtv~d~~~~~----~--- 118 (418)
T 2qs8_A 84 -------------------------------------I-KVEREMQAILATQHAYVTFKSGFTTVRQVGDSG----L--- 118 (418)
T ss_dssp -------------------------------------S-CCCHHHHHHHHHHHHHHHHHTTEEEEEECCCSS----S---
T ss_pred -------------------------------------h-cCCHHHHHHHHHHHHHHHHHcCCCEEEeCCCCc----c---
Confidence 0 012233344445578889999999999975311 0
Q ss_pred hHHHHHHHHHHhhcCC-CeeEEEEccCc-----------------------------cchhhHHHHHHhcCCCCCCceEE
Q 008063 280 WEDFADVYQWASYSEK-MKIRVCLFFPL-----------------------------ETWSSLADLINKTGHVLSDWVYL 329 (579)
Q Consensus 280 ~~~~~~~~~~~~~~~~-~~i~v~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~~ 329 (579)
. ...++...+.+. .+.++...... ...++..+......... .
T Consensus 119 ~---~~~~~~~~~~g~~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-----~ 190 (418)
T 2qs8_A 119 V---AISLRDAINSGKLAGPRIFAAGKTIATTGGHADPTNGKAVDDYDYPVPEQGVVNGPYEVYAAVRQRYKDG-----A 190 (418)
T ss_dssp H---HHHHHHHHHTTSSCCCEEEECCSCBEETTCTTCTTTTCCGGGCCCCCGGGTEECSHHHHHHHHHHHHHHT-----C
T ss_pred c---cHHHHHHHHCCCCCCCeEEecCccccccCCCccccccccccccccccccccccCCHHHHHHHHHHHHHcC-----C
Confidence 1 112333333332 23344331100 00111122211100001 1
Q ss_pred ceEEEEEcCccCCCcccccCCCCCCCCCCcccCCCHHHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhcCCC
Q 008063 330 GGVKAFADGSLGSNSALFHEPYADEPHNYGLQVMELESLLSMTMASDKSGLQVAIHAIGDRANDLVLDMYKSVVVTTGKR 409 (579)
Q Consensus 330 ~g~k~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~i~iH~~g~~~~~~~~~~~~~~~~~~~~~ 409 (579)
..+|++.+|.+...... .+...++++.++++++.|++.|+++.+|+.++.+++..++. +
T Consensus 191 ~~ik~~~~g~~~~~~~~-----------~g~~~~~~~~l~~~~~~A~~~g~~v~~H~~~~~~i~~~~~~--------g-- 249 (418)
T 2qs8_A 191 DGIKITVTGGVLSVAKS-----------GQNPQFTQEEVDAVVSAAKDYGMWVAVHAHGAEGMKRAIKA--------G-- 249 (418)
T ss_dssp SEEEEECBCCSSSSSSC-----------SSCBCSCHHHHHHHHHHHHHTTCEEEEEECSHHHHHHHHHH--------T--
T ss_pred CEEEEEecCCCCCCCCC-----------CCcccCCHHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHc--------C--
Confidence 35788888765332211 12344789999999999999999999999987766655532 2
Q ss_pred CCCceEeeccCCChhhHHHHhhCCcEEEecccccccchhHHH---HhhCh----hhh----hhhhhhHHHHHHCCCeeee
Q 008063 410 DQRFRIEHAQHLASGTAARFGDQGIVASMQPQHLLDDADSAR---KKLGV----DRA----ERESYLFQSLLANNALLAL 478 (579)
Q Consensus 410 ~~~~~i~H~~~~~~~~~~~~~~~~i~~~~~p~~~~~~~~~~~---~~l~~----~~~----~~~~~~l~~l~~~Gi~v~~ 478 (579)
...+.|+.++++++++++++.|+.+ +|........... ..+++ .+. .....+++.++++|+++++
T Consensus 250 --~~~i~H~~~~~~~~i~~l~~~gv~v--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gv~v~~ 325 (418)
T 2qs8_A 250 --VDSIEHGTFMDLEAMDLMIENGTYY--VPTISAGEFVAEKSKIDNFFPEIVRPKAASVGPQISDTFRKAYEKGVKIAF 325 (418)
T ss_dssp --CSEEEECTTCCHHHHHHHHHHTCEE--ECCHHHHHHHHHHTTSTTSSCTTTHHHHHHHHHHHHHHHHHHHHHTCCBCC
T ss_pred --CCEEEECCCCCHHHHHHHHHCCCEE--eeeechHHHhhhhccccCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEE
Confidence 4589999999999999999999864 5653211000000 01111 111 0235678999999999999
Q ss_pred cCCCCCCC-CCHHHHHHHHHcccCCCCCCCCCCCCCCCHHHHHHHHcHHHHHhcccCCccccccCCCcccEEEeCCCCCC
Q 008063 479 GSDWPVAD-INPLCAIRTAMKRIPPGWDNAWIPSERISLTDALIAHTLSAARACFLENDVGSLSPGKIADFVILSTSSWE 557 (579)
Q Consensus 479 gsD~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~npA~~lgl~~~~G~I~~G~~ADlvvld~~~~~ 557 (579)
|||.+..+ .+++.+++.++. .+++++++|+++|.|||+++|+++++|+|+|||.|||||+|.||++
T Consensus 326 gTD~~~~~~~~~~~e~~~~~~-------------~gls~~eal~~~T~n~A~~lg~~~~~G~l~~G~~ADlvvld~~~~~ 392 (418)
T 2qs8_A 326 GTDAGVQKHGTNWKEFVYMVE-------------NGMPAMKAIQSATMETAKLLRIEDKLGSIESGKLADLIAVKGNPIE 392 (418)
T ss_dssp CCCBTTBCTTCTTHHHHHHHH-------------TTCCHHHHHHHTTHHHHHHTTCTTTSSSCCTTSBCCEEEESSCTTT
T ss_pred eCCCCcCCcchHHHHHHHHHH-------------cCCCHHHHHHHHHHHHHHHhCCCCCCcccCCCCccCEEEECCChhh
Confidence 99986533 466777766543 2599999999999999999999988999999999999999999999
Q ss_pred ChhhccCCeEEEEEECCEEeC
Q 008063 558 DFAAEVSASIEATYVSGVQAY 578 (579)
Q Consensus 558 ~~~~~~~~~v~~v~v~G~~v~ 578 (579)
++.++. ++..||++|+++.
T Consensus 393 ~~~~~~--~i~~v~~~G~~~~ 411 (418)
T 2qs8_A 393 DISVLE--NVDVVIKDGLLYE 411 (418)
T ss_dssp CGGGGG--GEEEEEETTEEEE
T ss_pred CHHHhc--CccEEEECCEEEe
Confidence 887765 8999999999874
|
| >2paj_A Putative cytosine/guanine deaminase; NYSGXRC, PSI-II, amidohydrolase, sargasso SEA, enviro sample, structural genomics; 2.70A {Unidentified} SCOP: b.92.1.4 c.1.9.9 | Back alignment and structure |
|---|
Probab=100.00 E-value=9.4e-36 Score=320.57 Aligned_cols=391 Identities=15% Similarity=0.173 Sum_probs=239.4
Q ss_pred CCccEEEEcCe-EEeCCCC------CCeeeEEEEECCEEEEecChHHHHhhccCCCeEEeCCCCeeeccccccccccccc
Q 008063 43 LEADLVVTNGV-IFTGDDS------LLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHFIPG 115 (579)
Q Consensus 43 ~~~~~likn~~-v~~~~~~------~~~~~~v~I~~GkI~~Ig~~~~~~~~~~~~~~viD~~g~~V~PG~ID~H~H~~~~ 115 (579)
.+++++|+|++ |+++++. ....++|+|+||||++|++..+ +++.++||++|++|+|||||+|+|+..+
T Consensus 8 ~~~~~li~n~~~i~~~~~~~~~~~~~~~~~~v~I~~g~I~~vg~~~~-----~~~~~viD~~G~~v~PG~ID~H~H~~~~ 82 (492)
T 2paj_A 8 TQPSTLIRNAAAIMTGGRGTADDPSRVPGPDIRIVGDTIDAIGALAP-----RPGETIVDATDCVIYPAWVNTHHHLFQS 82 (492)
T ss_dssp --CEEEEECBSEEBCCCCSSSSSCSBCCCCCEEEETTEEEEESSCCC-----CTTCEEEECBTCEEEECEECCCCCGGGG
T ss_pred CCCCeEEECCEEEEecCCccccccceecccEEEEECCEEEEEcCCCC-----CCCCeEEECCCcEEeeCccccccChhhH
Confidence 34679999999 9998732 2367799999999999997542 1456899999999999999999999765
Q ss_pred CccccccccCCCCCHHHHHHHHHHHHHcCCCCCeEEEeCCCCCCCCCCCCChHHhhhhCCCCeEEEEeCCCchhhhcHHH
Q 008063 116 GLQMARVKLRGVSHKDEFVRRVKEAVKNSKKGSWILGGGWNNDLWGGDLPMASWIDDITPHNPVWLSRMDGHMGLANSVA 195 (579)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~p~~~~ld~~~~~~p~~~~~~~~~~~~~n~~~ 195 (579)
... +..... ..+...|+...
T Consensus 83 ~~~-------g~~~~~-------------------------------~~~~~~~l~~~---------------------- 102 (492)
T 2paj_A 83 LLK-------GEPAGL-------------------------------DATLTPWLAAT---------------------- 102 (492)
T ss_dssp GCC-------SCC-------------------------------------------------------------------
T ss_pred hhc-------CccCCC-------------------------------CCCHHHHHHhc----------------------
Confidence 321 000000 00000111100
Q ss_pred HHHcCCCCCCCCCCCCeEEeCCCCCcCEEEhHhHHHHhcccCCCCCHHHHHHHHHHHHHHHHhcCccEEEeCCcCCCCCc
Q 008063 196 LQLVGITNLSEDPNGGTIMKTSSGEPTGLLIDAAMKLILPWIPEVSVDERREALLRASNLALSRGVTTVVDFGRYYPGES 275 (579)
Q Consensus 196 ~~~~g~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Git~v~~~~~~~~~~~ 275 (579)
.....+..++++.........+.+++.|+|++.+++...+...
T Consensus 103 -------------------------------------~~~~~~~~~~e~~~~~~~~~~~~~l~~GvTtv~d~~~~~~~~~ 145 (492)
T 2paj_A 103 -------------------------------------PYRFRALFDERRFRLAARIGLIELARSGCATVADHNYVYYPGM 145 (492)
T ss_dssp ----------------------------------------CGGGCCHHHHHHHHHHHHHHHHTTTEEEEEECCCCCCTTC
T ss_pred -------------------------------------ccchhhcCCHHHHHHHHHHHHHHHHhcCcEEEEechhhccccc
Confidence 0001123466888888888999999999999999863222110
Q ss_pred cccchHHHHHHHHHHhhcCCCeeEEEEccCccc---------------------hhhHHHHHHhcCCCCCCceEEceEEE
Q 008063 276 VQLSWEDFADVYQWASYSEKMKIRVCLFFPLET---------------------WSSLADLINKTGHVLSDWVYLGGVKA 334 (579)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~g~k~ 334 (579)
. ...+....+...+ .++++........ ..+..++...... .... +.+++
T Consensus 146 ~---~~~~~~~~~~~~~---~g~r~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~~~~ 215 (492)
T 2paj_A 146 P---FDSSAILFEEAEK---LGLRFVLLRGGATQTRQLEADLPTALRPETLDAYVADIERLAARYHD-ASPR---AMRRV 215 (492)
T ss_dssp S---SCHHHHHHHHHHH---TTCEEEEEECCCSCCCSCSTTSCGGGCCCCHHHHHHHHHHHHHHTCC-CSTT---CSEEE
T ss_pred c---cchHHHHHHHHHH---cCCEEEEEchhhcccccccccCCccccccCHHHHHHHHHHHHHHhcc-CCCC---CceEE
Confidence 1 1122222222222 3455543221110 0011111111000 0000 00121
Q ss_pred EEcCccCCCcccccCCCCCCCCCCcc-cCCCHHHHHHHHHHHHHCCCeEEEEecch-HHHHHHHHHHH----HHHHhcCC
Q 008063 335 FADGSLGSNSALFHEPYADEPHNYGL-QVMELESLLSMTMASDKSGLQVAIHAIGD-RANDLVLDMYK----SVVVTTGK 408 (579)
Q Consensus 335 ~~dg~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~a~~~g~~i~iH~~g~-~~~~~~~~~~~----~~~~~~~~ 408 (579)
.. .+ .+. ..++++.++++++.|++.|+++.+|+.+. .+++..++.+. +.....+.
T Consensus 216 ~~------------~~-------~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~g~~~~~~~~~~g~ 276 (492)
T 2paj_A 216 VM------------AP-------TTVLYSISPREMRETAAVARRLGLRMHSHLSETVGYQDSAYSMYGKSPVAFCGEHDW 276 (492)
T ss_dssp EE------------CC-------TTTTTSSCHHHHHHHHHHHHHTTCEEEEECC-------------CCCHHHHHHHTTC
T ss_pred EE------------ec-------ccCCCCCCHHHHHHHHHHHHHcCCcEEEEeCCChHHHHHHHHHcCCCHHHHHHHCCC
Confidence 11 01 011 23688999999999999999999999864 44444443221 22234566
Q ss_pred CCCCceEeeccCCChhhHHHHhhCCcEEEecccccccchhHHHHhhChhhhhhhhhhHHHHHHCCCeeeecCCCCC--CC
Q 008063 409 RDQRFRIEHAQHLASGTAARFGDQGIVASMQPQHLLDDADSARKKLGVDRAERESYLFQSLLANNALLALGSDWPV--AD 486 (579)
Q Consensus 409 ~~~~~~i~H~~~~~~~~~~~~~~~~i~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD~~~--~~ 486 (579)
.+.+..+.|+.++++++++++++.|+.+++||.++. .++ ...+|++.++++|+++++|||++. ..
T Consensus 277 ~~~~~~i~H~~~~~~~~i~~l~~~gv~v~~~p~~~~--------~l~-----~~~~p~~~~~~~Gv~v~lgTD~~~~~~~ 343 (492)
T 2paj_A 277 LGSDVWYAHLVKVDADEIALLAQTGTGVAHCPQSNG--------RLG-----SGICPVREMADAGVPVSIGVDGAASNEA 343 (492)
T ss_dssp CSTTEEEESCCSCCHHHHHHHHHHTCEEEECHHHHH--------CC----------CCTTHHHHTCCEEECCCHHHHCSC
T ss_pred CCCCcEEEEEecCCHHHHHHHHHcCCEEEECchhhc--------ccC-----CCCCCHHHHHHCCCcEEEeCCCCCCCCC
Confidence 666788999999999999999999999999997653 122 334578889999999999999754 34
Q ss_pred CCHHHHHHHHHcccCCCC-----C-----CCCCCCCCCCHHHHHHHHcHHHHHhcccCCccccccCCCcccEEEeCCCCC
Q 008063 487 INPLCAIRTAMKRIPPGW-----D-----NAWIPSERISLTDALIAHTLSAARACFLENDVGSLSPGKIADFVILSTSSW 556 (579)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~-----~-----~~~~~~~~ls~~~al~~~T~npA~~lgl~~~~G~I~~G~~ADlvvld~~~~ 556 (579)
.+++.+++.++.+..... . ..+....+++++++|+++|.|||++||++ .+|+|+|||.|||||+|.|++
T Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~aT~~~A~~lgl~-~~Gsl~~Gk~ADlvvld~~~~ 422 (492)
T 2paj_A 344 ADMISEVHMTWLAQRARLGMLAQPAYRGGSFEGGAGAASIAEVIHWGTAGGARVMGLD-EVGKVAVGYAADIAVYRLDDP 422 (492)
T ss_dssp CSHHHHHHHHHHHHHHTC-------------------CCHHHHHHHHTHHHHHHHTCT-TSSCCSTTSBCCEEEEECCSG
T ss_pred CCHHHHHHHHHHHhhhhcccccccccccccccCCcCcCCHHHHHHHHHHHHHHHhCCC-CccccCCCCccCEEEEeCCCc
Confidence 688988887654221000 0 00113467999999999999999999999 689999999999999999964
Q ss_pred C------Chhhc----cCCeEEEEEECCEEeC
Q 008063 557 E------DFAAE----VSASIEATYVSGVQAY 578 (579)
Q Consensus 557 ~------~~~~~----~~~~v~~v~v~G~~v~ 578 (579)
. +.+.+ ...+|..||++|++||
T Consensus 423 ~~~~~~~p~~~i~~~~~~~~v~~v~v~G~~v~ 454 (492)
T 2paj_A 423 RYFGLHDPAIGPVASGGRPSVMALFSAGKRVV 454 (492)
T ss_dssp GGTTCSSGGGHHHHSCSCCEEEEEEETTEEEE
T ss_pred ccCCccCHHHHHHhcCCCCCceEEEECCEEEE
Confidence 2 22333 1347999999999987
|
| >2p9b_A Possible prolidase; protein structure initiative II, PSI-2, amidohydrolase, structural genomics; 1.70A {Bifidobacterium longum NCC2705} SCOP: b.92.1.10 c.1.9.17 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-35 Score=311.78 Aligned_cols=382 Identities=18% Similarity=0.169 Sum_probs=239.1
Q ss_pred CCccEEEEcCeEEeCCCCC-CeeeEEEE-ECCEEEEecChHHHHhhccCCCeEEeCCCCeeecccccccccccccCcccc
Q 008063 43 LEADLVVTNGVIFTGDDSL-LFADSMAI-KNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHFIPGGLQMA 120 (579)
Q Consensus 43 ~~~~~likn~~v~~~~~~~-~~~~~v~I-~~GkI~~Ig~~~~~~~~~~~~~~viD~~g~~V~PG~ID~H~H~~~~~~~~~ 120 (579)
...+++|+|++|+++++.. ..+++|+| +||||++|++..+... +.+.++||++|++|+|||||+|+|+..++...
T Consensus 11 ~~~~~li~n~~i~~~~~~~~~~~~~v~I~~~g~I~~Vg~~~~~~~--~~~~~viD~~G~~v~PG~ID~H~H~~~~~~~~- 87 (458)
T 2p9b_A 11 VEPFALAHATIVTGDKAGTILRNMTIVVGADGRIEQVAPSIETSI--PAEYHYLDGTGKIVMPGLINAHTHLFSQGKPL- 87 (458)
T ss_dssp CCCEEEEEEEEECCCTTCCEEEEEEEEECTTSBEEEEEEGGGCCC--CTTCEEEECTTCEEEECEEEEEECSCC------
T ss_pred CCCcEEEEeeEEEeCCCCccccCcEEEEecCCEEEEEeccccCCC--CCCCeEEECCCCEEccceeeeeeccccccccc-
Confidence 4567999999999987543 34579999 9999999997322111 24568999999999999999999997543210
Q ss_pred ccccCCCCCHHHHHHHHHHHHHcCCCCCeEEEeCCCCCCCCCCCCChHHhhhhCCCCeEEEEeCCCchhhhcHHHHHHcC
Q 008063 121 RVKLRGVSHKDEFVRRVKEAVKNSKKGSWILGGGWNNDLWGGDLPMASWIDDITPHNPVWLSRMDGHMGLANSVALQLVG 200 (579)
Q Consensus 121 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~p~~~~ld~~~~~~p~~~~~~~~~~~~~n~~~~~~~g 200 (579)
....+.+++..++... ..
T Consensus 88 ----~~~~~~~~~~~~~~~~---------------------------------~~------------------------- 105 (458)
T 2p9b_A 88 ----NPKLATPKGQRMVATF---------------------------------AH------------------------- 105 (458)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ----cccccchhhhhhhhhh---------------------------------hh-------------------------
Confidence 0000000000000000 00
Q ss_pred CCCCCCCCCCCeEEeCCCCCcCEEEhHhHHHHhcccCCCCCHHHHHHHHHHHHHHHHhcCccEEEeCCcCCCCCccccch
Q 008063 201 ITNLSEDPNGGTIMKTSSGEPTGLLIDAAMKLILPWIPEVSVDERREALLRASNLALSRGVTTVVDFGRYYPGESVQLSW 280 (579)
Q Consensus 201 ~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Git~v~~~~~~~~~~~~~~~~ 280 (579)
...+.++....+....+.++++|+|++.+++... + .
T Consensus 106 -------------------------------------~~~~~~~~~~~~~~~~~~~l~~GvTtv~d~~~~~----~---~ 141 (458)
T 2p9b_A 106 -------------------------------------SPLGKPYMAATVKHNATTLLESGVTTIRTLGDVG----Y---E 141 (458)
T ss_dssp -------------------------------------------CHHHHHHHHHHHHHHTTEEEEEESCCSS----S---H
T ss_pred -------------------------------------hcccccHHHHHHHHHHHHHHHcCCcEEEeCCCCc----c---c
Confidence 0001122344556688899999999999975311 1 1
Q ss_pred HHHHHHHHHHhhcCCC-eeEEEEccCc----------------cchhhHHHHHHhcCCCCCCceEEceEEEEEcCccCCC
Q 008063 281 EDFADVYQWASYSEKM-KIRVCLFFPL----------------ETWSSLADLINKTGHVLSDWVYLGGVKAFADGSLGSN 343 (579)
Q Consensus 281 ~~~~~~~~~~~~~~~~-~i~v~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~g~k~~~dg~~~~~ 343 (579)
...++.+.+.+.. +.+++...+. ....+..+......... ...+|++.+|.+...
T Consensus 142 ---~~~~~~~~~~g~~~g~r~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g-----~~~ik~~~~g~~~~~ 213 (458)
T 2p9b_A 142 ---VVTLRDQIDAGQILGPRILASGPLMAIPEGHGAPLIALTSGTPEEARTAVAQNLKAG-----VNAIKIAATGGVTDA 213 (458)
T ss_dssp ---HHHHHHHHHTTSSCCCEEECCCSCEECCCSSCCCCEECCSCCHHHHHHHHHHHHHTT-----CSCEEEECSCCTTSC
T ss_pred ---cHHHHHHHHcCCCCCCeEEecccccccCCCCCccccCccCCCHHHHHHHHHHHHHcC-----CCEEEEEecCCcCCC
Confidence 1223333333322 2354432110 11112222221111111 124788877654322
Q ss_pred cccccCCCCCCCCCCcccCCCHHHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhcCCCCCCceEeeccCCCh
Q 008063 344 SALFHEPYADEPHNYGLQVMELESLLSMTMASDKSGLQVAIHAIGDRANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLAS 423 (579)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~i~iH~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~H~~~~~~ 423 (579)
.+. . ..+...++++.+.++++.|++.|+++.+|+.++..++..++. | ...+.|+..+++
T Consensus 214 ~~~------~---~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~i~~~~~~--------G----~~~i~H~~~~~~ 272 (458)
T 2p9b_A 214 QEI------G---EAGSPQMSVEQMRAICDEAHQYGVIVGAHAQSPEGVRRSLLA--------G----VDTIEHGSVLDD 272 (458)
T ss_dssp CCC---------------CCCHHHHHHHHHHHHHTTCCEEEEECSHHHHHHHHHH--------T----CSEEEECCCCCH
T ss_pred Ccc------C---CCCCCcCCHHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHc--------C----CCEEEECCCCCH
Confidence 210 0 012334789999999999999999999999877665554332 2 458999999999
Q ss_pred hhHHHHh------hCCcEEEecccc--ccc----ch------hHHHHhhChhhhhhhhhhHHHHHHCCCeeeecCCCCC-
Q 008063 424 GTAARFG------DQGIVASMQPQH--LLD----DA------DSARKKLGVDRAERESYLFQSLLANNALLALGSDWPV- 484 (579)
Q Consensus 424 ~~~~~~~------~~~i~~~~~p~~--~~~----~~------~~~~~~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD~~~- 484 (579)
+++++++ +.|+.+ +|.. +.. .. ++.... ++.+......+++.++++|+++++|||.+.
T Consensus 273 ~~~~~~~~~~~~~~~g~~v--~p~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~Gv~~~~gtD~~~~ 349 (458)
T 2p9b_A 273 ELIGMFRHNPNALRGYSAL--IPTLSAGLPLTLLGQDVTGITDIQLEN-SKNVVGGMVSGARQAHEAGLMIGVGTDTGMT 349 (458)
T ss_dssp HHHHHHHCCTTSTTSCCEE--ECCHHHHHHHHHSCHHHHCCCHHHHHH-HHHHHHHHHHHHHHHHHTTCCBCCCCCTTST
T ss_pred HHHHHHhcccccccCCeEE--EeecchhhHHHhhhcccccCCHHHHHH-HHHHHHHHHHHHHHHHHCCCeEEEecCCCCC
Confidence 9999999 899865 4554 211 00 011111 122222445688999999999999999643
Q ss_pred -C-CCCHHHHHHHHHcccCCCCCCCCCCCCCCCHHHHHHHHcHHHHHhcccCCccccccCCCcccEEEeCCCCCCChhhc
Q 008063 485 -A-DINPLCAIRTAMKRIPPGWDNAWIPSERISLTDALIAHTLSAARACFLENDVGSLSPGKIADFVILSTSSWEDFAAE 562 (579)
Q Consensus 485 -~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~npA~~lgl~~~~G~I~~G~~ADlvvld~~~~~~~~~~ 562 (579)
. ..+++.+++.++.. .+++++++|+++|.|||+++|+++++|+|+|||.|||||+|.||++++..+
T Consensus 350 ~~~~~~~~~e~~~~~~~------------~~ls~~~al~~~T~~~A~~lgl~~~~Gsi~~Gk~ADlvvld~~p~~~~~~~ 417 (458)
T 2p9b_A 350 FVPQYATWRELELLVAY------------AGFSPAEALHAATAVNASILGVDAETGSLEVGKSADLLVLNANPLDDLRAL 417 (458)
T ss_dssp TSCTTCHHHHHHHHHHH------------HCCCHHHHHHHHTHHHHHHTTCTTTSSSCCTTSBCCEEEESSCTTTCGGGG
T ss_pred CCccccHHHHHHHHHHh------------cCCCHHHHHHHHHHHHHHHhCCcCCCCccCCCCcCCEEEECCCchhCHHHh
Confidence 1 13566666654431 258999999999999999999998899999999999999999999876655
Q ss_pred cCCeEEEEEECCEEeCC
Q 008063 563 VSASIEATYVSGVQAYP 579 (579)
Q Consensus 563 ~~~~v~~v~v~G~~v~~ 579 (579)
. +|..||++|++||.
T Consensus 418 ~--~v~~v~v~G~~v~~ 432 (458)
T 2p9b_A 418 E--HPALVIAAGHPVWR 432 (458)
T ss_dssp T--SCSEEEETTEECCS
T ss_pred c--cceEEEECCEEEec
Confidence 3 79999999999873
|
| >2puz_A Imidazolonepropionase; NYSGXRC, PSI-2, N-formimino-L- glutamate, product-bound, structural genomics, protein STRU initiative; HET: NIG; 1.83A {Agrobacterium tumefaciens str} SCOP: b.92.1.10 c.1.9.17 PDB: 2gok_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-35 Score=307.98 Aligned_cols=387 Identities=22% Similarity=0.228 Sum_probs=240.6
Q ss_pred CccEEEEcCeEEeCCCC----C-CeeeEEEEECCEEEEecChHHHHhhccCCCeEEeCCCCeeecccccccccccccCcc
Q 008063 44 EADLVVTNGVIFTGDDS----L-LFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHFIPGGLQ 118 (579)
Q Consensus 44 ~~~~likn~~v~~~~~~----~-~~~~~v~I~~GkI~~Ig~~~~~~~~~~~~~~viD~~g~~V~PG~ID~H~H~~~~~~~ 118 (579)
+++++|+|++++++++. . ...++|+|+||||++||+..+.+...+++.++||++|++|+|||||+|+|+...+..
T Consensus 14 ~~~~li~n~~i~t~~~~~~~~~~~~~~~v~I~~g~I~~vg~~~~~~~~~~~~~~viD~~G~~v~PG~ID~H~H~~~~~~~ 93 (419)
T 2puz_A 14 NATALWRNAQLATLNPAMDGIGAVENAVIAVRNGRIAFAGPESDLPDDLSTADETTDCGGRWITPALIDCHTHLVFGGNR 93 (419)
T ss_dssp -CEEEEEEEEEECCCTTSSTTCEEEEEEEEEETTEEEEEEETTSCCGGGSCCSEEEECTTCEEEECEEECCCCCCCSSCC
T ss_pred CCcEEEECCeEeccCcccccCCcccceEEEEECCEEEEEcChhhhhhhccCCCeEEeCCCCEeCcCceecccCccchhhh
Confidence 46799999999998652 2 357799999999999997543221112246899999999999999999998654321
Q ss_pred ccccccCCCCCHHHHHHHHHHHHHcCCCCCeEEEeCCCCCCCCCCCCChHHhhhhCCCCeEEEEeCCCchhhhcHHHHHH
Q 008063 119 MARVKLRGVSHKDEFVRRVKEAVKNSKKGSWILGGGWNNDLWGGDLPMASWIDDITPHNPVWLSRMDGHMGLANSVALQL 198 (579)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~p~~~~ld~~~~~~p~~~~~~~~~~~~~n~~~~~~ 198 (579)
..++..++.. .+| .....
T Consensus 94 -----------~~~~~~~~~~-------------~~~------------~~~~~-------------------------- 111 (419)
T 2puz_A 94 -----------AMEFEMRLNG-------------ATY------------EEIAK-------------------------- 111 (419)
T ss_dssp -----------HHHHHHHHTT-------------CCH------------HHHHH--------------------------
T ss_pred -----------HHHHHHHhcC-------------CCH------------HHHHh--------------------------
Confidence 1122111100 000 00000
Q ss_pred cCCCCCCCCCCCCeEEeCCCCCcCEEEhHhHHHHhcccCCCCCHHHHHHHHHHHHHHHHhcCccEEEeCCcCCCCCcccc
Q 008063 199 VGITNLSEDPNGGTIMKTSSGEPTGLLIDAAMKLILPWIPEVSVDERREALLRASNLALSRGVTTVVDFGRYYPGESVQL 278 (579)
Q Consensus 199 ~g~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Git~v~~~~~~~~~~~~~~ 278 (579)
.|+.+. . .....+..++++..+.....++.++++|+|++.+.+.+ +.. ..
T Consensus 112 ----------~~gg~~-----------~------~~~~~~~~~~~~~~~~~~~~~~~~~~~GvTt~~~~~~~--~~~-~~ 161 (419)
T 2puz_A 112 ----------AGGGIV-----------S------SVRDTRALSDEVLVAQALPRLDTLLSEGVSTIEIKSGY--GLD-IE 161 (419)
T ss_dssp ----------TTCSHH-----------H------HHHHHHHSCHHHHHHHHHHHHHHHHTTTEEEEEEECCS--CCS-HH
T ss_pred ----------cCCCee-----------c------chhhhccCCHHHHHHHHHHHHHHHHhcCCeEEEeCCCC--CCC-ch
Confidence 000000 0 00011123456777777788899999999999885321 110 00
Q ss_pred chHHHHHHHHHHhhcCCCeeEEEEcc----Ccc-chhh-HHHHHHhcCCCCCCceEEceEEEEEcCccCCCcccccCCCC
Q 008063 279 SWEDFADVYQWASYSEKMKIRVCLFF----PLE-TWSS-LADLINKTGHVLSDWVYLGGVKAFADGSLGSNSALFHEPYA 352 (579)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~i~v~~~~----~~~-~~~~-~~~~~~~~~~~~~~~~~~~g~k~~~dg~~~~~~~~~~~~~~ 352 (579)
......+.++.+.. ..++++.... ..+ .+.. ..++...... ..+. .....++.
T Consensus 162 ~~~~~~~~~~~~~~--~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~----------------~~~~~~~~ 220 (419)
T 2puz_A 162 TELKMLRVARRLET--LRPVRIVTSYLAAHATPADYKGRNADYITDVVL---PGLE----------------KAHAEGLA 220 (419)
T ss_dssp HHHHHHHHHHHHTT--TSSCEEEEEECCTTCCCGGGTTCHHHHHHHTHH---HHHH----------------HHHHTTCC
T ss_pred hHHHHHHHHHHHhh--hcCceEEEEecccccCchhhcccHHHHHHHHHh---hhhh----------------hhhhcccc
Confidence 11122233333322 3344443211 111 1100 0111110000 0000 00000000
Q ss_pred CC-CCCCcccCCCHHHHHHHHHHHHHCCCeEEEEecchH---HHHHHHHHHHHHHHhcCCCCCCceEeeccCCChhhHHH
Q 008063 353 DE-PHNYGLQVMELESLLSMTMASDKSGLQVAIHAIGDR---ANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLASGTAAR 428 (579)
Q Consensus 353 ~~-~~~~~~~~~~~~~l~~~~~~a~~~g~~i~iH~~g~~---~~~~~~~~~~~~~~~~~~~~~~~~i~H~~~~~~~~~~~ 428 (579)
+. ....+...++++.++++++.+++.|+++.+|+.+.. .++.. ...+ ...+.|+.+++++++++
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~--------~~~g----~~~~~H~~~~~~~~~~~ 288 (419)
T 2puz_A 221 DAVDGFCEGIAFSVKEIDRVFAAAQQRGLPVKLHAEQLSNLGGAELA--------ASYN----ALSADHLEYLDETGAKA 288 (419)
T ss_dssp SEECCEESTTSBCHHHHHHHHHHHHHTTCCBEEEESSSSCCSHHHHH--------HHTT----CSEEEECTTCCHHHHHH
T ss_pred cccccccCCCCcCHHHHHHHHHHHHHCCCcEEEEecccccCCHHHHH--------HhcC----CceehHhccCCHHHHHH
Confidence 00 000011225789999999999999999999997432 22211 1122 46789999999999999
Q ss_pred HhhCCcEEEecccccccchhHHHHhhChhhhhhhhhhHHHHHHCCCeeeecCCCCCC--C-CCHHHHHHHHHcccCCCCC
Q 008063 429 FGDQGIVASMQPQHLLDDADSARKKLGVDRAERESYLFQSLLANNALLALGSDWPVA--D-INPLCAIRTAMKRIPPGWD 505 (579)
Q Consensus 429 ~~~~~i~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD~~~~--~-~~~~~~~~~~~~~~~~~~~ 505 (579)
+++.|+.++++|.++.. + +. ...++++.++++|+++++|||++.. + .+++..++.++..
T Consensus 289 ~~~~g~~~~~~p~~~~~--------l---~~-~~~~~~~~~~~~Gv~~~lgsD~~~~~~~~~~l~~~~~~~~~~------ 350 (419)
T 2puz_A 289 LAKAGTVAVLLPGAFYA--------L---RE-KQLPPVQALRDAGAEIALATDCNPGTSPLTSLLLTMNMGATL------ 350 (419)
T ss_dssp HHHHTCEEEECHHHHHH--------H---TC-CCCCCHHHHHHHTCCEEECCCCCSSSCCBCCHHHHHHHHHHH------
T ss_pred HHHcCCcEEECCchhhh--------h---cc-cccccHHHHHHCCCeEEEECCCCCCCCccccHHHHHHHhccc------
Confidence 99999999999986531 1 11 3456889999999999999998642 2 5888888876642
Q ss_pred CCCCCCCCCCHHHHHHHHcHHHHHhcccCCccccccCCCcccEEEeCCCCCC-ChhhccCCeEEEEEECCEEeCC
Q 008063 506 NAWIPSERISLTDALIAHTLSAARACFLENDVGSLSPGKIADFVILSTSSWE-DFAAEVSASIEATYVSGVQAYP 579 (579)
Q Consensus 506 ~~~~~~~~ls~~~al~~~T~npA~~lgl~~~~G~I~~G~~ADlvvld~~~~~-~~~~~~~~~v~~v~v~G~~v~~ 579 (579)
.++|++++|+++|.|||+++|+++++|+|+|||.|||||||.|++. ....+...+|..||++|++|.+
T Consensus 351 ------~~ls~~~al~~~T~~~A~~lg~~~~~Gsi~~Gk~ADlvvld~~~~~~~~~~~~~~~v~~v~v~G~~v~~ 419 (419)
T 2puz_A 351 ------FRMTVEECLTATTRNAAKALGLLAETGTLEAGKSADFAIWDIERPAELVYRIGFNPLHARIFKGQKVSP 419 (419)
T ss_dssp ------HCCCHHHHHHHTTHHHHHHTTCTTTSSSCCTTSBCCEEEECCSSTTHHHHCBSCCCEEEEEETTEECC-
T ss_pred ------cCCCHHHHHHHHHHHHHHHcCCCCCccccCCCCcCCEEEECCCchhcchhhhcCCceEEEEECCEEcCC
Confidence 2489999999999999999999988999999999999999999887 3344446689999999999864
|
| >3be7_A Zn-dependent arginine carboxypeptidase; unknown source, amidohydrolase, sargasso SEA, structural GEN protein structure initiative, PSI; HET: ARG; 2.30A {Unidentified} SCOP: b.92.1.9 c.1.9.18 PDB: 3dug_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-34 Score=303.81 Aligned_cols=360 Identities=18% Similarity=0.188 Sum_probs=236.8
Q ss_pred CccEEEEcCeEEeCCCCCCeeeEEEEECCEEEEecChHHHHhhccCCCeEEeCCCCeeecccccccccccccCccccccc
Q 008063 44 EADLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHFIPGGLQMARVK 123 (579)
Q Consensus 44 ~~~~likn~~v~~~~~~~~~~~~v~I~~GkI~~Ig~~~~~~~~~~~~~~viD~~g~~V~PG~ID~H~H~~~~~~~~~~~~ 123 (579)
+.+++|+|++|+++++.....++|+|+||||++|++. . +.+.++||++|++|+|||||+|+|+. ....
T Consensus 5 ~~~~~i~n~~v~~~~~~~~~~~~v~I~~g~I~~ig~~-~-----~~~~~viD~~g~~v~PGlID~H~H~~-~~~~----- 72 (408)
T 3be7_A 5 SEDFLIKSKGYLDIQTGEIIKADLLIRNGKIAEIGKI-N-----TKDATVISIPDLILIPGLMDSHVHIV-GNDS----- 72 (408)
T ss_dssp CCCEEEEEEEEECTTTCCEECCEEEEETTEEEEEECC-C-----CSSSEEEEEEEEEEEECEEEEEECCS-SCCC-----
T ss_pred cceEEEEeeEEEeCCCCceeeeEEEEECCEEEEEeCC-C-----CCCCeEEECCCCEECcCceeeeEccc-CCCC-----
Confidence 3569999999999876433338999999999999975 1 24578999999999999999999985 2110
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCCCCeEEEeCCCCCCCCCCCCChHHhhhhCCCCeEEEEeCCCchhhhcHHHHHHcCCCC
Q 008063 124 LRGVSHKDEFVRRVKEAVKNSKKGSWILGGGWNNDLWGGDLPMASWIDDITPHNPVWLSRMDGHMGLANSVALQLVGITN 203 (579)
Q Consensus 124 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~p~~~~ld~~~~~~p~~~~~~~~~~~~~n~~~~~~~g~~~ 203 (579)
..| ...
T Consensus 73 -----------------------------~~~---------------~~~------------------------------ 78 (408)
T 3be7_A 73 -----------------------------KGE---------------ESI------------------------------ 78 (408)
T ss_dssp -----------------------------CSG---------------GGT------------------------------
T ss_pred -----------------------------cch---------------hhh------------------------------
Confidence 000 000
Q ss_pred CCCCCCCCeEEeCCCCCcCEEEhHhHHHHhcccCCCCCHHHHHHHHHHHHHHHHhcCccEEEeCCcCCCCCccccchHHH
Q 008063 204 LSEDPNGGTIMKTSSGEPTGLLIDAAMKLILPWIPEVSVDERREALLRASNLALSRGVTTVVDFGRYYPGESVQLSWEDF 283 (579)
Q Consensus 204 ~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Git~v~~~~~~~~~~~~~~~~~~~ 283 (579)
..++++.........+.++++|+|++.+++... + ..
T Consensus 79 -----------------------------------~~~~~~~~~~~~~~~~~~l~~GvTtv~d~~~~~----~---~~-- 114 (408)
T 3be7_A 79 -----------------------------------ADSSHMGTVWGVVNAEKTLMAGFTTVRNVGAAN----Y---AD-- 114 (408)
T ss_dssp -----------------------------------TCCTHHHHHHHHHHHHHHHTTTEEEEEECCCST----T---HH--
T ss_pred -----------------------------------cCCHHHHHHHHHHHHHHHHHcCCCEEEeCCCcc----c---cC--
Confidence 001133333445577889999999999985321 1 11
Q ss_pred HHHHHHHhhcCC-CeeEEEEccCc-------------------------cchhhHHHHHHhcCCCCCCceEEceEEEEEc
Q 008063 284 ADVYQWASYSEK-MKIRVCLFFPL-------------------------ETWSSLADLINKTGHVLSDWVYLGGVKAFAD 337 (579)
Q Consensus 284 ~~~~~~~~~~~~-~~i~v~~~~~~-------------------------~~~~~~~~~~~~~~~~~~~~~~~~g~k~~~d 337 (579)
..++...+.+. .+.++...... ....+..+......... ...+|++.+
T Consensus 115 -~~~~~~~~~~~~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-----~~~ik~~~~ 188 (408)
T 3be7_A 115 -VSVRDAIERGVINGPTMLVSGPALGITGGHCDHNLLPPEFNYSSEGVVDSPWEARKMVRKNRKYG-----ADLIKFCAT 188 (408)
T ss_dssp -HHHHHHHHTTSSCCCEEEECCSCBBCTTSTTSCCCSCTTTCCCCTTBCCSHHHHHHHHHHHHHTT-----CSEEEEECB
T ss_pred -HHHHHHHHCCCCCCCEEEEccceeeccCCCCccccccccccccCCcccCCHHHHHHHHHHHHhcC-----CCEEEEEec
Confidence 12333333222 12233321100 01112222222111111 124677777
Q ss_pred CccCCCcccccCCCCCCCCCCcccCCCHHHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhcCCCCCCceEee
Q 008063 338 GSLGSNSALFHEPYADEPHNYGLQVMELESLLSMTMASDKSGLQVAIHAIGDRANDLVLDMYKSVVVTTGKRDQRFRIEH 417 (579)
Q Consensus 338 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~i~iH~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~H 417 (579)
|.+..... ..+...++++.++++++.|++.|+++.+|+.+..+++..++. + ...+.|
T Consensus 189 g~~~~~~~-----------~~g~~~~~~~~l~~~~~~A~~~g~~v~~H~~~~~~i~~~~~~--------g----~~~i~H 245 (408)
T 3be7_A 189 GGVMSRNT-----------DVNAKQFTLEEMKAIVDEAHNHGMKVAAHAHGLIGIKAAIKA--------G----VDSVEH 245 (408)
T ss_dssp CCSSSSSC-----------CTTSBCSCHHHHHHHHHHHHHTTCEEEEEECSHHHHHHHHHH--------T----CSEEEE
T ss_pred CCcCCCCC-----------CCCCCCCCHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHc--------C----CCEEEE
Confidence 65432211 012344789999999999999999999999987765554431 2 358999
Q ss_pred ccCCChhhHHHHhhCCcEEEecccccccchhHH-HHhhChh---hh----hhhhhhHHHHHHCCCeeeecCCCCCCC-CC
Q 008063 418 AQHLASGTAARFGDQGIVASMQPQHLLDDADSA-RKKLGVD---RA----ERESYLFQSLLANNALLALGSDWPVAD-IN 488 (579)
Q Consensus 418 ~~~~~~~~~~~~~~~~i~~~~~p~~~~~~~~~~-~~~l~~~---~~----~~~~~~l~~l~~~Gi~v~~gsD~~~~~-~~ 488 (579)
+...+++.++++++.|+.+..++.......... ...+++. +. .....+++.+++.|+++++|||.+..+ .+
T Consensus 246 ~~~~~~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gv~~~~gTD~~~~p~~~ 325 (408)
T 3be7_A 246 ASFIDDETIDMAIKNNTVLSMDIFVSDYILGEGAKAGIREESLNKERLVGKKQRENFMNAHRRGAIITFGTDAGIFDHGD 325 (408)
T ss_dssp CTTCCHHHHHHHHHTTCEEECCCSTHHHHHTTTTTTTCCHHHHHHHHHHHHHHHHHHHHHHHHTCCEECCCCBTTBCTTC
T ss_pred CCCCCHHHHHHHHHCCCEEeeeecHHHHhhhhccccCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCch
Confidence 999999999999999987765543211000000 0011111 00 023467899999999999999986533 35
Q ss_pred HHHHHHHHHcccCCCCCCCCCCCCCCCHHHHHHHHcHHHHHhcccCCccccccCCCcccEEEeCCCCCCChhhccCCeEE
Q 008063 489 PLCAIRTAMKRIPPGWDNAWIPSERISLTDALIAHTLSAARACFLENDVGSLSPGKIADFVILSTSSWEDFAAEVSASIE 568 (579)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~npA~~lgl~~~~G~I~~G~~ADlvvld~~~~~~~~~~~~~~v~ 568 (579)
++.+++.++. .+++++++++++|.|||+++|++ .+|+|++||.|||||+|.||++++..+. +|.
T Consensus 326 ~~~~~~~~~~-------------~gls~~~al~~~T~n~A~~lgl~-~~G~i~~G~~ADlvvld~~p~~~~~~~~--~v~ 389 (408)
T 3be7_A 326 NAKQFAYMVE-------------WGMTPLEAIQASTIKTATLFGIE-NIGQIKEGFDADIVGVIENPLANIRTLE--EVA 389 (408)
T ss_dssp GGGHHHHHHH-------------TTCCHHHHHHTTTHHHHHHHTCS-SCSSCCTTSBCCEEEESSCTTTCGGGTT--SCC
T ss_pred HHHHHHHHHH-------------cCCCHHHHHHHHHHHHHHHhCCC-cccccCCCCccCEEEECCCchhhHHHhh--cee
Confidence 5666665442 25999999999999999999999 6899999999999999999998776654 799
Q ss_pred EEEECCEEeC
Q 008063 569 ATYVSGVQAY 578 (579)
Q Consensus 569 ~v~v~G~~v~ 578 (579)
.||++|++|+
T Consensus 390 ~v~~~G~~v~ 399 (408)
T 3be7_A 390 FVMKEGKVYK 399 (408)
T ss_dssp EEEETTEEEE
T ss_pred EEEECCEEEe
Confidence 9999999986
|
| >2bb0_A Imidazolonepropionase; TIM barrel, hydrolase; 2.00A {Bacillus subtilis} SCOP: b.92.1.10 c.1.9.17 PDB: 2g3f_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-35 Score=307.61 Aligned_cols=183 Identities=15% Similarity=0.146 Sum_probs=146.9
Q ss_pred CCHHHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhcCCCCCCceEeeccCCChhhHHHHhhCCcEEEecccc
Q 008063 363 MELESLLSMTMASDKSGLQVAIHAIGDRANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLASGTAARFGDQGIVASMQPQH 442 (579)
Q Consensus 363 ~~~~~l~~~~~~a~~~g~~i~iH~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~H~~~~~~~~~~~~~~~~i~~~~~p~~ 442 (579)
++++.++++++.|++.|+++.+|+.+..... .++ .. ...+ ...+.|+.++++++++++++.++.+++||.+
T Consensus 227 ~~~e~l~~~~~~a~~~g~~v~~H~~~~~~~~-~~~---~~-~~~g----~~~~~H~~~~~~~~i~~~~~~g~~~~~~p~~ 297 (421)
T 2bb0_A 227 FTVSQSRRYLQKAAEAGFGLKIHADEIDPLG-GAE---LA-GKLK----AVSADHLVGTSDEGIKKLAEAGTIAVLLPGT 297 (421)
T ss_dssp BCHHHHHHHHHHHHHTTCEEEEEECSSSCCS-HHH---HH-HHTT----CSEEEECTTCCHHHHHHHHHHTCEEEECHHH
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeccccccC-HHH---HH-HHcC----CcEEhhhhcCCHHHHHHHHHcCCeEEECCch
Confidence 5789999999999999999999986432100 011 11 1123 5679999999999999999999999999987
Q ss_pred cccchhHHHHhhChhhhhhhhhhHHHHHHCCCeeeecCCCCC-C--CCCHHHHHHHHHcccCCCCCCCCCCCCCCCHHHH
Q 008063 443 LLDDADSARKKLGVDRAERESYLFQSLLANNALLALGSDWPV-A--DINPLCAIRTAMKRIPPGWDNAWIPSERISLTDA 519 (579)
Q Consensus 443 ~~~~~~~~~~~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~a 519 (579)
+.. +. . ....+++.++++|+++++|||++. + ..+++..++.++.. .++|+++|
T Consensus 298 ~~~--------l~---~-~~~~~~~~~~~~Gv~v~lgtD~~~~~~~~~~~~~~~~~~~~~------------~~ls~~ea 353 (421)
T 2bb0_A 298 TFY--------LG---K-STYARARAMIDEGVCVSLATDFNPGSSPTENIQLIMSIAALH------------LKMTAEEI 353 (421)
T ss_dssp HHH--------TT---C-CCCCCHHHHHHTTCCEEECCCBBTTTBCCCCHHHHHHHHHHH------------SCCCHHHH
T ss_pred hhh--------hc---c-cccchHHHHHHCCCeEEEeCCCCCCCCcccCHHHHHHHHhcc------------cCCCHHHH
Confidence 641 11 1 345688999999999999999754 2 24888888877642 35999999
Q ss_pred HHHHcHHHHHhcccCCccccccCCCcccEEEeCCCCCC-ChhhccCCeEEEEEECCEEeC
Q 008063 520 LIAHTLSAARACFLENDVGSLSPGKIADFVILSTSSWE-DFAAEVSASIEATYVSGVQAY 578 (579)
Q Consensus 520 l~~~T~npA~~lgl~~~~G~I~~G~~ADlvvld~~~~~-~~~~~~~~~v~~v~v~G~~v~ 578 (579)
|+++|.|||+++|+++++|+|+|||.|||||+|.|++. .+..+...+|..||++|++||
T Consensus 354 l~~~T~~~A~~lg~~~~~Gsl~~Gk~ADlvvld~~~~~~~~~~~~~~~v~~t~v~G~~v~ 413 (421)
T 2bb0_A 354 WHAVTVNAAYAIGKGEEAGQLKAGRSADLVIWQAPNYMYIPYHYGVNHVHQVMKNGTIVV 413 (421)
T ss_dssp HHHTTHHHHHHTTCTTTSSCCSTTSBCCEEEESSSSTTHHHHSCSSCCEEEEEETTEEEE
T ss_pred HHHHHHHHHHHhCccCCccccCCCCcCCEEEECCcccccCHhHcCCCceEEEEECCEEEE
Confidence 99999999999999988999999999999999999876 334444568999999999987
|
| >2q09_A Imidazolonepropionase; 9252H, NYSGXRC, 3-(2, 5-dioxo-imidazo 4YL)-propionic acid, PSI-2 community, structural genomics, structure initiative; HET: DI6; 1.97A {Unidentified} SCOP: b.92.1.10 c.1.9.17 PDB: 2oof_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-34 Score=304.23 Aligned_cols=384 Identities=21% Similarity=0.206 Sum_probs=242.7
Q ss_pred ccEEEEcCeEEeCCCC-----CCeeeEEEEECCEEEEecChHHHHhhccCCCeEEeCCCCeeecccccccccccccCccc
Q 008063 45 ADLVVTNGVIFTGDDS-----LLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHFIPGGLQM 119 (579)
Q Consensus 45 ~~~likn~~v~~~~~~-----~~~~~~v~I~~GkI~~Ig~~~~~~~~~~~~~~viD~~g~~V~PG~ID~H~H~~~~~~~~ 119 (579)
|+++|+|++|+++++. ....++|+|+||||++|++..+.+.. .+.++||++|++|+|||||+|+|+..++..
T Consensus 5 ~~~li~n~~i~t~~~~~~~~~~~~~~~v~I~~g~I~~vg~~~~~~~~--~~~~viD~~G~~v~PG~ID~H~H~~~~~~~- 81 (416)
T 2q09_A 5 CERVWLNVTPATLRSDLADYGLLEPHALGVHEGRIHALVPMQDLKGP--YPAHWQDMKGKLVTPGLIDCHTHLIFAGSR- 81 (416)
T ss_dssp CSEEEEEEEEBCCCTTSSTTCBCSSEEEEEETTEEEEEEEGGGCC----CCTTSEECTTCEEEECEEEEEECCCCCSCC-
T ss_pred ccEEEEcCeEeccCcccccccccccceEEEECCEEEEEcChhhcccc--CCCeEEeCCCCEECCcccccccCcchhhhh-
Confidence 6799999999998762 23677999999999999976442210 145789999999999999999998765431
Q ss_pred cccccCCCCCHHHHHHHHHHHHHcCCCCCeEEEeCCCCCCCCCCCCChHHhhhhCCCCeEEEEeCCCchhhhcHHHHHHc
Q 008063 120 ARVKLRGVSHKDEFVRRVKEAVKNSKKGSWILGGGWNNDLWGGDLPMASWIDDITPHNPVWLSRMDGHMGLANSVALQLV 199 (579)
Q Consensus 120 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~p~~~~ld~~~~~~p~~~~~~~~~~~~~n~~~~~~~ 199 (579)
..++..++. |.+|. +..
T Consensus 82 ----------~~~~~~~~~-------------g~~~~-----------~~~----------------------------- 98 (416)
T 2q09_A 82 ----------AEEFELRQK-------------GVPYA-----------EIA----------------------------- 98 (416)
T ss_dssp ----------HHHHHHHHT-------------TCCHH-----------HHH-----------------------------
T ss_pred ----------HHHHHHHHh-------------cCCHH-----------Hhh-----------------------------
Confidence 111211110 00000 000
Q ss_pred CCCCCCCCCCCCeEEeCCCCCcCEEEhHhHHHHhcccCCCCCHHHHHHHHHHHHHHHHhcCccEEEeCCcCCCCCccccc
Q 008063 200 GITNLSEDPNGGTIMKTSSGEPTGLLIDAAMKLILPWIPEVSVDERREALLRASNLALSRGVTTVVDFGRYYPGESVQLS 279 (579)
Q Consensus 200 g~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Git~v~~~~~~~~~~~~~~~ 279 (579)
+.|+.+.+ .....+..++++.........+.++++|+|++.+++.+ +.. ...
T Consensus 99 --------~~~g~~~~-----------------~~~~~~~~~~e~~~~~~~~~~~~~l~~GvTtv~~~~~~--~~~-~~~ 150 (416)
T 2q09_A 99 --------RKGGGIIS-----------------TVRATRAASEDQLFELALPRVKSLIREGVTTVEIKSGY--GLT-LED 150 (416)
T ss_dssp --------HTTCTHHH-----------------HHHHHHHSCHHHHHHHHHHHHHHHHHHTEEEEEEECCS--CCS-HHH
T ss_pred --------hcCCcEee-----------------hhhhccCCCHHHHHHHHHHHHHHHHHcCCcEEEeccCc--ccC-hHh
Confidence 00000000 00011234567778888888999999999999996421 111 001
Q ss_pred hHHHHHHHHHHhhcCCCeeEEEE--c--cCcc-chhh-HHHHHHhcC-CCCCCceE---EceEEEEEcCccCCCcccccC
Q 008063 280 WEDFADVYQWASYSEKMKIRVCL--F--FPLE-TWSS-LADLINKTG-HVLSDWVY---LGGVKAFADGSLGSNSALFHE 349 (579)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~i~v~~--~--~~~~-~~~~-~~~~~~~~~-~~~~~~~~---~~g~k~~~dg~~~~~~~~~~~ 349 (579)
.....+.++.+... .++++.. . ...+ .... ..++..... .....+.. ...++..
T Consensus 151 ~~~~~~~~~~~~~~--~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------- 214 (416)
T 2q09_A 151 ELKMLRVARRLGEA--LPIRVKTTLLAAHAVPPEYRDDPDSWVETICQEIIPAAAEAGLADAVDVF-------------- 214 (416)
T ss_dssp HHHHHHHHHHHHHH--SSSEEEEEEEEETSCCGGGTTCHHHHHHHHHHTHHHHHHHTTCCSEEEEB--------------
T ss_pred HHHHHHHHHHHHhh--CCceEEEeeeccccCCccccCCHHHHHHHHHhhhhHHHHhcccccccccc--------------
Confidence 11222333333222 2344332 1 1111 1100 011111000 00000000 0000000
Q ss_pred CCCCCCCCCcccCCCHHHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhcCCCCCCceEeeccCCChhhHHHH
Q 008063 350 PYADEPHNYGLQVMELESLLSMTMASDKSGLQVAIHAIGDRANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLASGTAARF 429 (579)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~i~iH~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~H~~~~~~~~~~~~ 429 (579)
.+...++++.+.++++.|++.|+++.+|+.+...... + +.+ ...+ ...+.|+.++++++++++
T Consensus 215 --------~~~~~~~~~~~~~~~~~a~~~g~~v~~H~~~~~~~~~-~---~~~-~~~g----~~~~~H~~~~~~~~~~~~ 277 (416)
T 2q09_A 215 --------CEHIGFSLAQTEQVYLAADQYGLAVKGHMDQLSNLGG-S---TLA-ANFG----ALSVDHLEYLDPEGIQAL 277 (416)
T ss_dssp --------BSTTSBCHHHHHHHHHHHHHTTCEEEEEESSSCCCSH-H---HHH-HHTT----CSEEEECTTCCHHHHHHH
T ss_pred --------cCCCcCCHHHHHHHHHHHHHCCCcEEEEECCCCchHH-H---HHH-HHcC----CCEEeecccCCHHHHHHH
Confidence 0112257899999999999999999999975421111 1 111 1123 457999999999999999
Q ss_pred hhCCcEEEecccccccchhHHHHhhChhhhhhhhhhHHHHHHCCCeeeecCCCCCC---CCCHHHHHHHHHcccCCCCCC
Q 008063 430 GDQGIVASMQPQHLLDDADSARKKLGVDRAERESYLFQSLLANNALLALGSDWPVA---DINPLCAIRTAMKRIPPGWDN 506 (579)
Q Consensus 430 ~~~~i~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD~~~~---~~~~~~~~~~~~~~~~~~~~~ 506 (579)
++.++.+++||.++.. +. . ...++++.++++|+++++|||.+.. ..+++..++.++..
T Consensus 278 ~~~g~~~~~~p~~~~~--------~~---~-~~~~~~~~~~~~Gv~~~~gtD~~~~~~~~~~~~~~~~~~~~~------- 338 (416)
T 2q09_A 278 AHRGVVATLLPTAFYF--------LK---E-TKLPPVVALRKAGVPMAVSSDINPGTAPIVSLRMAMNMACTL------- 338 (416)
T ss_dssp HHHTCEEEECHHHHHH--------TT---C-CCCCCHHHHHHTTCCEEECCCCBTTTBCCCCHHHHHHHHHHH-------
T ss_pred HHcCCeEEEcCccHHh--------hc---c-ccccCHHHHHHCCCeEEEecCCCCccCCCCCHHHHHHHHHHH-------
Confidence 9999999999987541 11 1 3456889999999999999998642 35888888877642
Q ss_pred CCCCCCCCCHHHHHHHHcHHHHHhcccCCccccccCCCcccEEEeCCCCCC-ChhhccCCeEEEEEECCEEeCC
Q 008063 507 AWIPSERISLTDALIAHTLSAARACFLENDVGSLSPGKIADFVILSTSSWE-DFAAEVSASIEATYVSGVQAYP 579 (579)
Q Consensus 507 ~~~~~~~ls~~~al~~~T~npA~~lgl~~~~G~I~~G~~ADlvvld~~~~~-~~~~~~~~~v~~v~v~G~~v~~ 579 (579)
.+++++++|+++|.|||+++|+++++|+|+|||.|||||+|.|++. .+..+...+|..||++|++||.
T Consensus 339 -----~~l~~~~al~~~T~~~A~~lg~~~~~G~l~~G~~ADlvvld~~~~~~~~~~~~~~~v~~v~v~G~~v~~ 407 (416)
T 2q09_A 339 -----FGLTPVEAMAGVTRHAARALGEQEQLGQLRVGMLADFLVWNCGHPAELSYLIGVDQLVSRVVNGEETLH 407 (416)
T ss_dssp -----HCCCHHHHHHHTTHHHHHHTTCTTTSSSCCTTSBCCEEEESSSCTTHHHHSCSCCCEEEEEETTEECCC
T ss_pred -----cCCCHHHHHHHHHHHHHHHhCCCccceecCCCCCccEEEECCCchhhhhhhhccCcceEEEECCEEEEe
Confidence 3489999999999999999999988999999999999999999887 3333345689999999999974
|
| >2qt3_A N-isopropylammelide isopropyl amidohydrolase; N-isopropylammelide isopropylaminohydrolase ATZC, structural genomics, NYSGXRC, target 9364B; 2.24A {Pseudomonas SP} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-34 Score=302.19 Aligned_cols=372 Identities=16% Similarity=0.118 Sum_probs=234.5
Q ss_pred CccEEEEcCeEEeCCCCCCeeeEEEEECCEEEEecChHHHHhhccCCCeEEeCCCCeeecccccccccccccCccccccc
Q 008063 44 EADLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHFIPGGLQMARVK 123 (579)
Q Consensus 44 ~~~~likn~~v~~~~~~~~~~~~v~I~~GkI~~Ig~~~~~~~~~~~~~~viD~~g~~V~PG~ID~H~H~~~~~~~~~~~~ 123 (579)
+++++|+|++|+++.+. ++|+|+||||++|++..+ .++.++||++|++|+|||||+|+|+...........
T Consensus 4 ~~~~li~n~~v~~~~~~----~~v~I~~g~I~~vg~~~~-----~~~~~viD~~G~~v~PGlID~H~H~~~~~~~~~~~~ 74 (403)
T 2qt3_A 4 DFDLIIRNAYLSEKDSV----YDIGIVGDRIIKIEAKIE-----GTVKDEIDAKGNLVSPGFVDAHTHMDKSFTSTGERL 74 (403)
T ss_dssp CEEEEEEEEEETTTTEE----EEEEEETTEEEEEESSCC-----SCEEEEEECTTCBEEECEEEEEECGGGTTTTCSSSS
T ss_pred ccceEEEeeEecCCCee----EEEEEECCEEEEeecCCC-----CCccceEcCCCCEecccceeeeeccchhhccccccc
Confidence 45799999999986542 799999999999997532 123579999999999999999999965421000000
Q ss_pred c--CCC--CCHHHHHHHHHHHHHcCCCCCeEEEeCCCCCCCCCCCCChHHhhhhCCCCeEEEEeCCCchhhhcHHHHHHc
Q 008063 124 L--RGV--SHKDEFVRRVKEAVKNSKKGSWILGGGWNNDLWGGDLPMASWIDDITPHNPVWLSRMDGHMGLANSVALQLV 199 (579)
Q Consensus 124 ~--~~~--~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~p~~~~ld~~~~~~p~~~~~~~~~~~~~n~~~~~~~ 199 (579)
. .+. .....+..++..
T Consensus 75 ~~~~g~~~~~~~~l~~~~~~------------------------------------------------------------ 94 (403)
T 2qt3_A 75 PKFWSRPYTRDAAIEDGLKY------------------------------------------------------------ 94 (403)
T ss_dssp CTTCSSCCCHHHHHHHHHHH------------------------------------------------------------
T ss_pred ccccCCCcccCcCHHHHHHH------------------------------------------------------------
Confidence 0 000 000001111100
Q ss_pred CCCCCCCCCCCCeEEeCCCCCcCEEEhHhHHHHhcccCCCCCHHHHHHHHHHHHHHHHhcCccEEEeCCcCCCCCccccc
Q 008063 200 GITNLSEDPNGGTIMKTSSGEPTGLLIDAAMKLILPWIPEVSVDERREALLRASNLALSRGVTTVVDFGRYYPGESVQLS 279 (579)
Q Consensus 200 g~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Git~v~~~~~~~~~~~~~~~ 279 (579)
.. ..++++...........++++|+|++.++....+.. ....
T Consensus 95 ---------------------------------~~----~~~~~~~~~~~~~~~~~~l~~GvTtv~~~~~~~~~~-~~~~ 136 (403)
T 2qt3_A 95 ---------------------------------YK----NATHEEIKRHVIEHAHMQVLHGTLYTRTHVDVDSVA-KTKA 136 (403)
T ss_dssp ---------------------------------HH----HCCHHHHHHHHHHHHHHHHHTTEEEEEEEEECSTTT-TTHH
T ss_pred ---------------------------------hh----hcCHHHHHHHHHHHHHHHHHcCCcEEEEEEcccCcc-ccch
Confidence 00 114567777777888999999999997653221111 0011
Q ss_pred hHHHHHHHHHHhhcCCCeeEEEEccCc--cchhhHHHHHHhcCCCCCCceEEceEEEEEcCccCCCcccccCCCCCCCCC
Q 008063 280 WEDFADVYQWASYSEKMKIRVCLFFPL--ETWSSLADLINKTGHVLSDWVYLGGVKAFADGSLGSNSALFHEPYADEPHN 357 (579)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~i~v~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~k~~~dg~~~~~~~~~~~~~~~~~~~ 357 (579)
.....+..+.. .....+.+..+... ...++..+..+.......+.. + + + .|..
T Consensus 137 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-----~----~--------~-~p~~----- 191 (403)
T 2qt3_A 137 VEAVLEAKEEL--KDLIDIQVVAFAQSGFFVDLESESLIRKSLDMGCDLV-----G----G--------V-DPAT----- 191 (403)
T ss_dssp HHHHHHHHHHH--TTTCEEEEEEECTTCTTTSTTHHHHHHHHHHTTCSEE-----E----C--------B-CTTT-----
T ss_pred HHHHHHHHHHh--hcceeEEEEEcCCcccccCcchHHHHHHHHhcCCCeE-----E----E--------e-cCCC-----
Confidence 12222222222 22344444332211 111122222221111111110 0 0 0 0110
Q ss_pred CcccCCCHHHHHHHHHHHHHCCCeEEEEecchHH-HHHHHHHHHHHHHhcCCCCCCceEeeccCCCh-------hhHHHH
Q 008063 358 YGLQVMELESLLSMTMASDKSGLQVAIHAIGDRA-NDLVLDMYKSVVVTTGKRDQRFRIEHAQHLAS-------GTAARF 429 (579)
Q Consensus 358 ~~~~~~~~~~l~~~~~~a~~~g~~i~iH~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~i~H~~~~~~-------~~~~~~ 429 (579)
....+++.++++++.|+++|+++.+|+.+... ....++.+-+.....+. +.+..+.|+..+++ ++++++
T Consensus 192 --~~~~~~~~l~~~~~~A~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~i~H~~~~~~~~~~~~~~~~~~l 268 (403)
T 2qt3_A 192 --RENNVEGSLDLCFKLAKEYDVDIDYHIHDIGTVGVYSINRLAQKTIENGY-KGRVTTSHAWCFADAPSEWLDEAIPLY 268 (403)
T ss_dssp --TTSCHHHHHHHHHHHHHHTTCEEEEEECCCHHHHHHHHHHHHHHHHHTTC-TTSEEEEECTHHHHSCHHHHHHHHHHH
T ss_pred --CCCChHHHHHHHHHHHHHcCCCeEEEeCCcccchhHHHHHHHHHHHHcCC-CCCeEEEehhhhccCChhhHHHHHHHH
Confidence 11245689999999999999999999986533 22333322222334554 56889999998875 799999
Q ss_pred hhCCcEEEecccccccchhHHHHhhChhhhhhhhhhHHHHHHCCCeeeecCCCCCC------CCCHHHHHHHHHcccCCC
Q 008063 430 GDQGIVASMQPQHLLDDADSARKKLGVDRAERESYLFQSLLANNALLALGSDWPVA------DINPLCAIRTAMKRIPPG 503 (579)
Q Consensus 430 ~~~~i~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD~~~~------~~~~~~~~~~~~~~~~~~ 503 (579)
++.|+.+++||... ....+++.++++|+++++|||++.. ..+++..++.+.....
T Consensus 269 ~~~g~~v~~~p~~~-----------------~~~~~~~~~~~~Gv~v~lgtD~~~~~~~~~g~~~~~~~~~~~~~~~~-- 329 (403)
T 2qt3_A 269 KDSGMKFVTCFSST-----------------PPTMPVIKLLEAGINLGCASDNIRDFWVPFGNGDMVQGALIETQRLE-- 329 (403)
T ss_dssp HHHTCEEEEETTTC-----------------CTTCCHHHHHHTTCEEEEECCSCSSSSCSCCCCCHHHHHHHHHHHTT--
T ss_pred HHcCCEEEECCCCC-----------------CCCCCHHHHHHcCCcEEEeCCCCCCCCCCCCCCCHHHHHHHHHHHhC--
Confidence 99999999999632 3355789999999999999998632 2477877776653221
Q ss_pred CCCCCCCCCCCCHHHHHHHHcHHHHHhcccCCccccccCCCcccEEEeCCCC-CCChhhccCCeEEEEEECCEEeC
Q 008063 504 WDNAWIPSERISLTDALIAHTLSAARACFLENDVGSLSPGKIADFVILSTSS-WEDFAAEVSASIEATYVSGVQAY 578 (579)
Q Consensus 504 ~~~~~~~~~~ls~~~al~~~T~npA~~lgl~~~~G~I~~G~~ADlvvld~~~-~~~~~~~~~~~v~~v~v~G~~v~ 578 (579)
...+++++++|+++|.|||+++|+++ .|+|++||.|||||+|.++ ++.+.. ..+|..||++|++||
T Consensus 330 ------~~~~~~~~~al~~~T~~~A~~lg~~~-~g~i~~G~~ADlvv~d~~~~~~~~~~--~~~v~~v~v~G~~v~ 396 (403)
T 2qt3_A 330 ------LKTNRDLGLIWKMITSEGARVLGIEK-NYGIEVGKKADLVVLNSLSPQWAIID--QAKRLCVIKNGRIIV 396 (403)
T ss_dssp ------CCSHHHHHHHHHHTTHHHHHHHTCGG-GCSSSTTSBCCEEEESSSSHHHHHHH--CCCEEEEEETTEEEE
T ss_pred ------cCCccCHHHHHHHHHHHHHHhcCCCc-ccCCCCCCcCCEEEEcCCChHHHhhc--CCCccEEEECCEEEe
Confidence 01237999999999999999999987 4999999999999999986 543221 458999999999986
|
| >2ood_A BLR3880 protein; PSI-II, PSI-2, guanine deaminase, guanine, structural genomics, protein structure initiative; HET: GUN; 2.62A {Bradyrhizobium japonicum} SCOP: b.92.1.4 c.1.9.9 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-34 Score=309.70 Aligned_cols=204 Identities=19% Similarity=0.193 Sum_probs=156.7
Q ss_pred CCCHHHHHHHHHHHHHC-CCeEEEEecch-HHHHHHHHH------HHHHHHhcCCCCCCceEeeccCCChhhHHHHhhCC
Q 008063 362 VMELESLLSMTMASDKS-GLQVAIHAIGD-RANDLVLDM------YKSVVVTTGKRDQRFRIEHAQHLASGTAARFGDQG 433 (579)
Q Consensus 362 ~~~~~~l~~~~~~a~~~-g~~i~iH~~g~-~~~~~~~~~------~~~~~~~~~~~~~~~~i~H~~~~~~~~~~~~~~~~ 433 (579)
.++++.++++++.+++. |+++++|+.+. .++....+. ........+..+.+..+.|+.++++++++++++.|
T Consensus 210 ~~~~e~l~~~~~~a~~~~g~~v~~H~~e~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~i~H~~~~~~~~i~~~~~~g 289 (475)
T 2ood_A 210 GASPELLKACQRLKHEHPDCWVNTHISENPAECSGVLVEHPDCQDYLGVYEKFDLVGPKFSGGHGVYLSNNEFRRMSKKG 289 (475)
T ss_dssp GCCHHHHHHHHHHHHHCTTSEEEEECSCCHHHHHHHHHHCTTCSSHHHHHHTTTCCSTTEEEECCTTCCHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHhCCCCcEEEeeCCChHHHHHHHHHcCCCccHHHHHHHcCCCCCCcEEEEeecCCHHHHHHHHHcC
Confidence 36889999999999999 99999999865 334444432 12233444556677889999999999999999999
Q ss_pred cEEEecccccccchhHHHHhhChhhhhhhhhhHHHHHHCCCe--eeecCCCCC-CCCCHHHHHHHHHcccC-----CCCC
Q 008063 434 IVASMQPQHLLDDADSARKKLGVDRAERESYLFQSLLANNAL--LALGSDWPV-ADINPLCAIRTAMKRIP-----PGWD 505 (579)
Q Consensus 434 i~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~~Gi~--v~~gsD~~~-~~~~~~~~~~~~~~~~~-----~~~~ 505 (579)
+.+++||.++. .++ ...++++.+++.|++ +++|||.+. .+.+++.+++.++.+.. ..+.
T Consensus 290 ~~~~~~P~~~~--------~l~-----~~~~~~~~~~~~Gv~~~~~lgTD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (475)
T 2ood_A 290 AAVVFCPCSNL--------FLG-----SGLFRLGRATDPEHRVKMSFGTDVGGGNRFSMISVLDDAYKVGMCNNTLLDGS 356 (475)
T ss_dssp CEEEECHHHHH--------HTT-----CCCCCHHHHTCTTSCCEEEECCCBTTBSCCCHHHHHHHHHHHHHHHHHHSSSS
T ss_pred CEEEEChhhhh--------hcc-----cCcCCHHHHHhCCCCCcEEEEccCCCCCCcCHHHHHHHHHHHhcccchhccCC
Confidence 99999998753 233 456689999999999 999999865 45788988888754311 0000
Q ss_pred -----CCC--CCCCCCCHHHHHHHHcHHHHHhcccCCccccccCCCcccEEEeCCCCCCC--hhh---------------
Q 008063 506 -----NAW--IPSERISLTDALIAHTLSAARACFLENDVGSLSPGKIADFVILSTSSWED--FAA--------------- 561 (579)
Q Consensus 506 -----~~~--~~~~~ls~~~al~~~T~npA~~lgl~~~~G~I~~G~~ADlvvld~~~~~~--~~~--------------- 561 (579)
..+ ..+.+++++++|+++|.|||+++|+++++|+|+|||.|||||+|.|++.. ...
T Consensus 357 ~~p~~~~~~~~~~~~ls~~~al~~~T~~~A~~lgl~~~~GsL~~Gk~ADlvvld~~~~~~~~~~~~~~~~~~~s~~~~~~ 436 (475)
T 2ood_A 357 IDPSRKDLAEAERNKLSPYRGFWSVTLGGAEGLYIDDKLGNFEPGKEADFVALDPNGGQLAQPWHQSLIADGAGPRTVDE 436 (475)
T ss_dssp SCGGGCCHHHHHHTCCCHHHHHHHTTHHHHHHTTCTTTSSSCCTTSBCCEEEECTTCSSTTHHHHHTTC--CCSCCSHHH
T ss_pred cccccccccccccCCCCHHHHHHHHHHHHHHHhCCCCCceeeCCCCccCEEEEeCCCccccccccccccccccccccccc
Confidence 000 00257999999999999999999999889999999999999999998652 211
Q ss_pred c-----------cCCeEEEEEECCEEeC
Q 008063 562 E-----------VSASIEATYVSGVQAY 578 (579)
Q Consensus 562 ~-----------~~~~v~~v~v~G~~v~ 578 (579)
+ ...+|..||++|++||
T Consensus 437 ~~~p~~~~~~~~~~~~V~~t~v~G~~v~ 464 (475)
T 2ood_A 437 AASMLFAVMMVGDDRCVDETWVMGKRLY 464 (475)
T ss_dssp HHHHHHHHHHHCCGGGEEEEEETTEEEE
T ss_pred hhhHHHHHHhhCCCCCeeEEEECCEEEE
Confidence 1 2468999999999997
|
| >2i9u_A Cytosine/guanine deaminase related protein; protein structure initiative II (PSI-II), amidohydrol guanine deaminase; HET: GUN; 2.05A {Clostridium acetobutylicum} SCOP: b.92.1.4 c.1.9.9 | Back alignment and structure |
|---|
Probab=100.00 E-value=8.8e-34 Score=300.70 Aligned_cols=383 Identities=17% Similarity=0.187 Sum_probs=242.8
Q ss_pred CCccEEEEcCeEEeCCC---CCCeeeEEEEECCEEEEecChHHHHhhccCCCeEEeCCCCeeecccccccccccccCccc
Q 008063 43 LEADLVVTNGVIFTGDD---SLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHFIPGGLQM 119 (579)
Q Consensus 43 ~~~~~likn~~v~~~~~---~~~~~~~v~I~~GkI~~Ig~~~~~~~~~~~~~~viD~~g~~V~PG~ID~H~H~~~~~~~~ 119 (579)
.+.+++|+|++|+++++ ....+++|+|+||||++|++..... .++.++||++|++|+|||||+|+|+.....
T Consensus 7 ~m~~~li~~~~v~~~~~~~~~~~~~~~v~I~~g~I~~ig~~~~~~---~~~~~viD~~G~~v~PGlID~H~H~~~~~~-- 81 (439)
T 2i9u_A 7 DINLKIFKGNLIFTKTSDKFTIMKDSYIVVIDGKIASVSSNLPDK---YKGNPIIDFRNNIIIPGMNDLHAHASQYKN-- 81 (439)
T ss_dssp --CEEEEEEEEEEEEETTEEEEEEEEEEEEETTEEEEEESSCCGG---GTTSCEEEEEEEEEEECEEEEEEEGGGGGG--
T ss_pred CcccEEEEeeEEEecCCccceEEeccEEEEECCEEEEeccccccc---CCCceEEcCCCeEEEecceecccccchHhh--
Confidence 45679999999999862 2236789999999999998642211 135689999999999999999999975421
Q ss_pred cccccCCCCCHHHHHHHHHHHHHcCCCCCeEEEeCCCCCCCCCCCCChHHhhhh-CCCCeEEEEeCCCchhhhcHHHHHH
Q 008063 120 ARVKLRGVSHKDEFVRRVKEAVKNSKKGSWILGGGWNNDLWGGDLPMASWIDDI-TPHNPVWLSRMDGHMGLANSVALQL 198 (579)
Q Consensus 120 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~p~~~~ld~~-~~~~p~~~~~~~~~~~~~n~~~~~~ 198 (579)
+|... +.+...|+... +|
T Consensus 82 -----~g~~~---------------------------------~~~~~~~~~~~~~p----------------------- 100 (439)
T 2i9u_A 82 -----LGIGM---------------------------------DKELLPWLNNYTFP----------------------- 100 (439)
T ss_dssp -----TTCCC---------------------------------SSCHHHHHHHTHHH-----------------------
T ss_pred -----hCCcC---------------------------------CCCHHHHHHhcccc-----------------------
Confidence 01000 01111222110 00
Q ss_pred cCCCCCCCCCCCCeEEeCCCCCcCEEEhHhHHHHhcccCCCCCHHHHHHHHHHHHHHHHhcCccEEEeCCcCCCCCcccc
Q 008063 199 VGITNLSEDPNGGTIMKTSSGEPTGLLIDAAMKLILPWIPEVSVDERREALLRASNLALSRGVTTVVDFGRYYPGESVQL 278 (579)
Q Consensus 199 ~g~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Git~v~~~~~~~~~~~~~~ 278 (579)
....+ .++++.........+.+++.|+|++.+++..
T Consensus 101 ----------------------------------~~~~~--~~~~~~~~~~~~~~~~~l~~GvTtv~~~~~~-------- 136 (439)
T 2i9u_A 101 ----------------------------------EEAKF--LNVDYAKKTYGRLIKDLIKNGTTRVALFATL-------- 136 (439)
T ss_dssp ----------------------------------HHHGG--GSHHHHHHHHHHHHHHHHHTTEEEEEEECCS--------
T ss_pred ----------------------------------hhhcc--CCHHHHHHHHHHHHHHHHhcCceEEEEcccc--------
Confidence 00000 1335666666777889999999999996421
Q ss_pred chHHHHHHHHHHhhcCCCeeEEEEc---cC--cc-----c----hhhHHHHHHhcCCCCCCceEEceEEEEEcCccCCCc
Q 008063 279 SWEDFADVYQWASYSEKMKIRVCLF---FP--LE-----T----WSSLADLINKTGHVLSDWVYLGGVKAFADGSLGSNS 344 (579)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~i~v~~~---~~--~~-----~----~~~~~~~~~~~~~~~~~~~~~~g~k~~~dg~~~~~~ 344 (579)
..+.....++.+.+.+ +++... .. .+ . ..+..++.+.... ... .+++..
T Consensus 137 ~~~~~~~~~~~~~~~g---~r~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~-~~~-----~i~~~~-------- 199 (439)
T 2i9u_A 137 HKDSTIELFNMLIKSG---IGAYVGKVNMDYNCPDYLTENYITSLNDTEEIILKYKD-KSN-----IVKPII-------- 199 (439)
T ss_dssp CHHHHHHHHHHHHHHT---CEEEEECEECCSSCCTTSCCCHHHHHHHHHHHHHHHTT-TCS-----SEEECB--------
T ss_pred ccchHHHHHHHHHHcC---CEEEEEeeeccccCCcccchhHHHHHHHHHHHHHHHhC-CCC-----ceEEEE--------
Confidence 1112233444333322 332211 10 01 0 1111222221100 001 122110
Q ss_pred ccccCCCCCCCCCCcccCCCHHHHHHHHHHHHHCCCeEEEEecch-HHHHHHHHHH------HHHHHhcCCCC-CCceEe
Q 008063 345 ALFHEPYADEPHNYGLQVMELESLLSMTMASDKSGLQVAIHAIGD-RANDLVLDMY------KSVVVTTGKRD-QRFRIE 416 (579)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~i~iH~~g~-~~~~~~~~~~------~~~~~~~~~~~-~~~~i~ 416 (579)
.|. ....++++.++++++.|++.|+++.+|+.+. .+.+..++.+ .+.....+..+ .+..+.
T Consensus 200 ----~~~-------~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~i~ 268 (439)
T 2i9u_A 200 ----TPR-------FVPSCSNELMDGLGKLSYKYRLPVQSHLSENLDEIAVVKSLHKKSNFYGEVYDKFGLFGNTPTLMA 268 (439)
T ss_dssp ----EEC-------CGGGCCHHHHHHHHHHHHHHTCCEEEEESCCHHHHHHHHHHCTTCSSHHHHHHHTTCSSSSCEEEE
T ss_pred ----ecC-------CcCcCCHHHHHHHHHHHHhcCCcEEEeecCChHHHHHHHHHhCCCCCHHHHHHHcCCCCCCCeEEE
Confidence 010 0123678999999999999999999999864 4455444421 12234456555 678899
Q ss_pred eccCCChhhHHHHhhCCcEEEecccccccchhHHHHhhChhhhhhhhhhHHHHHHCCCeeeecCCCCC-CCCCHHHHHHH
Q 008063 417 HAQHLASGTAARFGDQGIVASMQPQHLLDDADSARKKLGVDRAERESYLFQSLLANNALLALGSDWPV-ADINPLCAIRT 495 (579)
Q Consensus 417 H~~~~~~~~~~~~~~~~i~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD~~~-~~~~~~~~~~~ 495 (579)
|+.++++++++++++.|+.+++||.++. .++ ...++++.++++|+++++|||.+. ...+++.+++.
T Consensus 269 H~~~~~~~~~~~l~~~g~~~~~~p~~~~--------~l~-----~~~~~~~~~~~~Gv~~~lgtD~~~~~~~~~~~~~~~ 335 (439)
T 2i9u_A 269 HCIHSSKEEINLIKRNNVTIVHCPTSNF--------NLG-----SGMMPVRKYLNLGINVVLGSDISAGHTCSLFKVIAY 335 (439)
T ss_dssp ECCSCCHHHHHHHHHTTCEEEECHHHHH--------HTT-----CCCCCHHHHHHTTCEEEECCCBTTBCCSCHHHHHHH
T ss_pred EEecCCHHHHHHHHHcCCEEEECccchh--------hcc-----cccCCHHHHHHCCCcEEEecCCCCCCCcCHHHHHHH
Confidence 9999999999999999999999998753 222 345688999999999999999865 34688888877
Q ss_pred HHcccCCCCCCCCCCCCCCCHHHHHHHHcHHHHHhcccCCccccccCCCcccEEEeCCCCCCCh--------hhc----c
Q 008063 496 AMKRIPPGWDNAWIPSERISLTDALIAHTLSAARACFLENDVGSLSPGKIADFVILSTSSWEDF--------AAE----V 563 (579)
Q Consensus 496 ~~~~~~~~~~~~~~~~~~ls~~~al~~~T~npA~~lgl~~~~G~I~~G~~ADlvvld~~~~~~~--------~~~----~ 563 (579)
++...............+++++++|+++|.|||+++| ++|+|+|||.|||||+|.+++... ..+ .
T Consensus 336 ~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~~A~~lg---~~Gsl~~G~~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~ 412 (439)
T 2i9u_A 336 AIQNSKIKWQESGKKDMFLSTSEAFYMATKKGGSFFG---KVGSFEEGYDFDALVINDSNLYPEDYDLTERLERFIYLGD 412 (439)
T ss_dssp HHHHHHHHHHHTTSCSCCCCHHHHHHHHTHHHHTTTS---SCSSCSTTCBCCEEEECCTTSCGGGSCHHHHHHHHHHHCC
T ss_pred HHHHhccccccccCCCCCCCHHHHHHHHHHHHHHHhc---cCCccCCCCccCEEEEeCCCccccCCCccCHHHHheecCC
Confidence 6632100000001134579999999999999999999 389999999999999999975421 211 1
Q ss_pred CCeEEEEEECCEEeCC
Q 008063 564 SASIEATYVSGVQAYP 579 (579)
Q Consensus 564 ~~~v~~v~v~G~~v~~ 579 (579)
..+|..||++|++||.
T Consensus 413 ~~~v~~v~v~G~~v~~ 428 (439)
T 2i9u_A 413 DRNIMKRYVCGNEIFG 428 (439)
T ss_dssp GGGEEEEEETTEEEC-
T ss_pred CCCeeEEEECCEEEee
Confidence 3489999999999974
|
| >1ra0_A Cytosine deaminase; alpha-beta barrel, hexamer, conformation change, D314G mutant, hydrolase; 1.12A {Escherichia coli} SCOP: b.92.1.2 c.1.9.5 PDB: 1r9x_A 1ra5_A 1r9y_A 1r9z_A 1rak_A 3r0d_A* 3o7u_A* 3rn6_A* 1k6w_A 1k70_A 3g77_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-35 Score=309.48 Aligned_cols=386 Identities=14% Similarity=0.153 Sum_probs=241.9
Q ss_pred CccEEEEcCeEEeCCCCCCeeeEEEEECCEEEEecChHHHHhhccCCCeEEeCCCCeeecccccccccccccCccccccc
Q 008063 44 EADLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHFIPGGLQMARVK 123 (579)
Q Consensus 44 ~~~~likn~~v~~~~~~~~~~~~v~I~~GkI~~Ig~~~~~~~~~~~~~~viD~~g~~V~PG~ID~H~H~~~~~~~~~~~~ 123 (579)
+++++|+|++|++++ ..++|+|+||||++|++..+.+ .++.++||++|++|+|||||+|+|+......
T Consensus 7 ~~~~li~n~~v~~~~----~~~~v~I~~g~I~~vg~~~~~~---~~~~~viD~~G~~v~PGlID~H~Hl~~~~~~----- 74 (430)
T 1ra0_A 7 NALQTIINARLPGEE----GLWQIHLQDGKISAIDAQSGVM---PITENSLDAEQGLVIPPFVEPHIHLDTTQTA----- 74 (430)
T ss_dssp -CCCEEEEEBCTTCC----SEEEEEEETTEEEEEEEESSCC---CCCTTEEECTTCEEESCEEEEEECTTTTTCT-----
T ss_pred CCcEEEEeeEecCCC----ceeEEEEECCEEEEeecCCCCC---CCCcceEccCCCEecccccccccchhhhhhc-----
Confidence 457999999999864 5679999999999999754321 1456899999999999999999998653210
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCCCCeEEEeCCCCCCCCCCCCChHHhhhhCCCCeEEEEeCCCchhhhcHHHHHHcCCCC
Q 008063 124 LRGVSHKDEFVRRVKEAVKNSKKGSWILGGGWNNDLWGGDLPMASWIDDITPHNPVWLSRMDGHMGLANSVALQLVGITN 203 (579)
Q Consensus 124 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~p~~~~ld~~~~~~p~~~~~~~~~~~~~n~~~~~~~g~~~ 203 (579)
+... +....+...|+..
T Consensus 75 --~~~~------------------------------~~~~~~~~~~l~~------------------------------- 91 (430)
T 1ra0_A 75 --GQPN------------------------------WNQSGTLFEGIER------------------------------- 91 (430)
T ss_dssp --TSSS------------------------------CCSSCCHHHHHHH-------------------------------
T ss_pred --CCCc------------------------------CCCCCCHHHHHHH-------------------------------
Confidence 0000 0000011112111
Q ss_pred CCCCCCCCeEEeCCCCCcCEEEhHhHHHHhcccCCCCCHHHHHHHHHHHHHHHHhcCccEEEeCCcCCCCCccccchHHH
Q 008063 204 LSEDPNGGTIMKTSSGEPTGLLIDAAMKLILPWIPEVSVDERREALLRASNLALSRGVTTVVDFGRYYPGESVQLSWEDF 283 (579)
Q Consensus 204 ~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Git~v~~~~~~~~~~~~~~~~~~~ 283 (579)
+....+..++++.+.....+...++++|+|++.+++..... ....+...
T Consensus 92 -----------------------------~~~~~~~~~~e~~~~~~~~~~~~~l~~GvTtv~d~~~~~~~--~~~~~~~~ 140 (430)
T 1ra0_A 92 -----------------------------WAERKALLTHDDVKQRAWQTLKWQIANGIQHVRTHVDVSDA--TLTALKAM 140 (430)
T ss_dssp -----------------------------HHHHHTTCCHHHHHHHHHHHHHHHHHTTEEEEEEEEECCST--TCHHHHHH
T ss_pred -----------------------------hHHhhhhcCHHHHHHHHHHHHHHHHhcCccEEeeccccCCh--HHHHHHHH
Confidence 01112345567888888889999999999999997532110 01112222
Q ss_pred HHHHHHHhhcCCCeeEEEEccCccc--hhhHHHHHHhcCCCCCCceEEceEEEEEcCccCCCcccccCCCCCCCCCCccc
Q 008063 284 ADVYQWASYSEKMKIRVCLFFPLET--WSSLADLINKTGHVLSDWVYLGGVKAFADGSLGSNSALFHEPYADEPHNYGLQ 361 (579)
Q Consensus 284 ~~~~~~~~~~~~~~i~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~g~k~~~dg~~~~~~~~~~~~~~~~~~~~~~~ 361 (579)
.+..+.+ ...+.+.+..+..... .++..+.......... ++ +.. ....++. .
T Consensus 141 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~------~~-------~~~---~~~~~~~--------~ 194 (430)
T 1ra0_A 141 LEVKQEV--APWIDLQIVAFPQEGILSYPNGEALLEEALRLGA------DV-------VGA---IPHFEFT--------R 194 (430)
T ss_dssp HHHHHHH--TTTCEEEEEEECTTCSSSSTTHHHHHHHHHHTTC------SE-------ECC---CGGGSSS--------H
T ss_pred HHHHHhh--hhhEEEEEEecCCcccccCchHHHHHHHHHHhCC------Ce-------Eee---eeccccc--------c
Confidence 2221111 2333333322211000 1111111111000000 01 000 0111110 0
Q ss_pred CCCHHHHHHHHHHHHHCCCeEEEEecch-HHHHHHHHHHHHHHHhcCCCCCCceEeeccCCChh-------hHHHHhhCC
Q 008063 362 VMELESLLSMTMASDKSGLQVAIHAIGD-RANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLASG-------TAARFGDQG 433 (579)
Q Consensus 362 ~~~~~~l~~~~~~a~~~g~~i~iH~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~i~H~~~~~~~-------~~~~~~~~~ 433 (579)
.++++.++++++.|++.|+++.+|+.+. .+....++.+.+.....+. +.+..+.|+.+++++ +++++++.|
T Consensus 195 ~~~~~~l~~~~~~A~~~g~~v~~H~~e~~~~~~~~~~~~~~~~~~~g~-~~~~~i~H~~~~~~~~~~~~~~~i~~~~~~g 273 (430)
T 1ra0_A 195 EYGVESLHKTFALAQKYDRLIDVHCDEIDDEQSRFVETVAALAHHEGM-GARVTASHTTAMHSYNGAYTSRLFRLLKMSG 273 (430)
T ss_dssp HHHHHHHHHHHHHHHHHTCEEEEEECCSSCTTCCHHHHHHHHHHHHTC-GGGEEEEECGGGGGSCHHHHHHHHHHHHHHT
T ss_pred cccHHHHHHHHHHHHHcCCCEEEEECCCCchhHHHHHHHHHHHHHhCC-CCCEEEEeccccccCChHhHHHHHHHHHHcC
Confidence 1467899999999999999999999753 3333333333344444454 667899999998875 899999999
Q ss_pred cEEEecccccccchhHHHHhhChhhhhhhhhhHHHHHHCCCeeeecCCCCC------CCCCHHHHHHHHHcccCCCCCCC
Q 008063 434 IVASMQPQHLLDDADSARKKLGVDRAERESYLFQSLLANNALLALGSDWPV------ADINPLCAIRTAMKRIPPGWDNA 507 (579)
Q Consensus 434 i~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD~~~------~~~~~~~~~~~~~~~~~~~~~~~ 507 (579)
+.+++||.++...... ..+..+. +...+++.++++|+++++|||++. ...+++.+++.++.+...
T Consensus 274 v~v~~~p~~~~~~~~~---~~~~p~~-~~~~~~~~~~~~Gv~~~lgTD~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 344 (430)
T 1ra0_A 274 INFVANPLVNIHLQGR---FDTYPKR-RGITRVKEMLESGINVCFGHDGVFDPWYPLGTANMLQVLHMGLHVCQL----- 344 (430)
T ss_dssp CEEEECHHHHHHHTTT---TCCSSCC-CCCCCHHHHHHTTCCEEECCBCSSBTTBSCCCCCHHHHHHHHHHHTTC-----
T ss_pred CEEEECchhhhhhccc---cCCCCCc-CCCCCHHHHHHCCCEEEEeCCCCcccCCCCCCCCHHHHHHHHHHHHcc-----
Confidence 9999999765421110 0111111 345678999999999999999853 336889998877653321
Q ss_pred CCCCCCCCHHHHHHHHcHHHHHhcccCCccccccCCCcccEEEeCCCCCC-ChhhccCCeEEEEEECCEEeC
Q 008063 508 WIPSERISLTDALIAHTLSAARACFLENDVGSLSPGKIADFVILSTSSWE-DFAAEVSASIEATYVSGVQAY 578 (579)
Q Consensus 508 ~~~~~~ls~~~al~~~T~npA~~lgl~~~~G~I~~G~~ADlvvld~~~~~-~~~~~~~~~v~~v~v~G~~v~ 578 (579)
..+++++++|+++|.|||+++|+++ |+|+|||.|||||+|.++.. .+. ...+|..||++|++||
T Consensus 345 ---~~~~~~~~al~~~T~~~A~~lg~~~--G~i~~G~~ADlvv~d~~~~~~~~~--~~~~v~~v~~~G~~v~ 409 (430)
T 1ra0_A 345 ---MGYGQINDGLNLITHHSARTLNLQD--YGIAAGNSANLIILPAENGFDALR--RQVPVRYSVRGGKVIA 409 (430)
T ss_dssp ---CSHHHHHGGGGGGTHHHHHHTTCSS--CSSCTTSBCCEEEESSSSHHHHHH--HTCCCSEEEETTEEEE
T ss_pred ---CCcccHHHHHHHHHHHHHHHhCCCC--cccCCCCcCCEEEEcCCChhHHHh--ccCcceEEEECCEEEe
Confidence 1236999999999999999999986 99999999999999987533 221 2458999999999986
|
| >4f0l_A Amidohydrolase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.05A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.9e-34 Score=302.73 Aligned_cols=197 Identities=18% Similarity=0.152 Sum_probs=154.2
Q ss_pred CCHHHHHHHHHHHHHCCCeEEEEec-chHHHHHHHHHHH----HHHHhcCCCCCCceEeeccCCChhhHHHHhhCCcEEE
Q 008063 363 MELESLLSMTMASDKSGLQVAIHAI-GDRANDLVLDMYK----SVVVTTGKRDQRFRIEHAQHLASGTAARFGDQGIVAS 437 (579)
Q Consensus 363 ~~~~~l~~~~~~a~~~g~~i~iH~~-g~~~~~~~~~~~~----~~~~~~~~~~~~~~i~H~~~~~~~~~~~~~~~~i~~~ 437 (579)
++++.++++++.|+ |+++++|+. +..++....+.+. +.....+..+.+..+.|+.++++++++++++.++.++
T Consensus 221 ~~~~~l~~~~~~a~--g~~v~~H~~e~~~~~~~~~~~~g~~~~~~l~~~g~l~~~~~~~H~~~~~~~~~~~l~~~g~~~~ 298 (458)
T 4f0l_A 221 VTPDELDSVTQLLP--DAPVHIHVAEQVKEVEDCIAWSGKRPVEWLLDHQDVTARWCLIHATHMSDEETKHMAKAGAIAG 298 (458)
T ss_dssp SCHHHHHHHTTSST--TSCEEEEESCSHHHHHHHHHHHSSCHHHHHHHHSCCCTTEEEEECCSCCHHHHHHHHHHTCEEE
T ss_pred CCHHHHHHHHHHhc--CCCEEEEeCCCHHHHHHHHHHhCCCHHHHHHHcCCCCCCeEEEEeccCCHHHHHHHHHcCCeEE
Confidence 68899999999888 999999998 4455666555442 2344456677899999999999999999999999999
Q ss_pred ecccccccchhHHHHhhChhhhhhhhhhHHHHHHCCCeeeecCCCCCCCCCHHHHHHHHHcc--cCCCCCCCCCCCCCCC
Q 008063 438 MQPQHLLDDADSARKKLGVDRAERESYLFQSLLANNALLALGSDWPVADINPLCAIRTAMKR--IPPGWDNAWIPSERIS 515 (579)
Q Consensus 438 ~~p~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ls 515 (579)
+||.++. .++ ....+++.++++|+++++|||. ....+++.+++.+... ........+....+++
T Consensus 299 ~~p~s~~--------~l~-----~~~~~~~~~~~~Gv~v~lgtD~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (458)
T 4f0l_A 299 LCPVTEA--------NLG-----DGTFNATEFAAAGGKFGIGSDS-NVLIGIGDELRQLEYSQRLYHRARNVLAANEGST 364 (458)
T ss_dssp ECHHHHH--------HTT-----CCCCCHHHHHHTTCEEEECCBT-TSSCCHHHHHHHHHHHHHHHHTCSSCSCSTTSBH
T ss_pred ECccccc--------ccc-----CCCccHHHHHHCCCeEEEECCC-CCCCCHHHHHHHHHHHHhhhccCccccCCcccCC
Confidence 9998764 233 4466899999999999999995 3557899888876532 1111111223455799
Q ss_pred HHHHHHHHcHHHHHhcccCCccccccCCCcccEEEeCCCCCC--Chhhc--------cCCeEEEEEECCEEeC
Q 008063 516 LTDALIAHTLSAARACFLENDVGSLSPGKIADFVILSTSSWE--DFAAE--------VSASIEATYVSGVQAY 578 (579)
Q Consensus 516 ~~~al~~~T~npA~~lgl~~~~G~I~~G~~ADlvvld~~~~~--~~~~~--------~~~~v~~v~v~G~~v~ 578 (579)
++++|+++|.|||++||++ +|+|++||.|||||+|.++.. +..+. .. +|..||++|++||
T Consensus 365 ~~~~l~~~T~~~A~~lg~~--~G~l~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~-~v~~v~v~G~~v~ 434 (458)
T 4f0l_A 365 GRALFDGAVLGGNIAMGRP--EDGLKKGASADFVSLDVERLPHAKGDVVLDGWIFAGRA-HVCDVWVRGVKQV 434 (458)
T ss_dssp HHHHHHHHHHHHHHHTTCT--TCSSSTTSBCCEEEEECTTSTTCCHHHHHHHHHHTSCC-EEEEEEETTEEEE
T ss_pred HHHHHHHHHHHHHHHhCCC--CCcCCCCCcCCEEEEeCCCCccCCcccHHHhCeEcCCC-CceEEEECCEEEE
Confidence 9999999999999999993 799999999999999998754 22211 14 8999999999987
|
| >3hpa_A Amidohydrolase; signature of Zn ligands, structural genomics, NYSGXRC, target 9236E, PSI-2, protein structure initiative; 2.20A {Unidentified} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.7e-33 Score=295.68 Aligned_cols=388 Identities=18% Similarity=0.210 Sum_probs=236.1
Q ss_pred cCCCccEEEEcCeEE-eCCC--CCCeeeEEEEECCEEEEecChHHHHhhccCCCeEEeCCCCeeecccccccccccccCc
Q 008063 41 TNLEADLVVTNGVIF-TGDD--SLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHFIPGGL 117 (579)
Q Consensus 41 ~~~~~~~likn~~v~-~~~~--~~~~~~~v~I~~GkI~~Ig~~~~~~~~~~~~~~viD~~g~~V~PG~ID~H~H~~~~~~ 117 (579)
...+.+++|||++|+ ++++ ...++++|+|+||||++||+..+.+ +.+.++||++|++|+|||||+|+|+++...
T Consensus 25 ~~~p~~llI~na~vi~T~D~~~~vi~~gdV~I~dgrI~aVG~~~~~~---~~~~~vIDa~G~~v~PG~ID~H~H~~~~~~ 101 (479)
T 3hpa_A 25 SSRPKTLLVKHADVLVTMDDTRRELRDAGLYIEDNRIVAVGPSAELP---ETADEVLDLRGHLVIPGLVNTHHHMYQSLT 101 (479)
T ss_dssp ----CEEEEEEEEEEECCCTTCCEEEEEEEEEETTEEEEEEEGGGSC---SCCSEEEECTTEEEEECEEECCCCGGGGGS
T ss_pred CCCCCCEEEECCEEEEeeCCCCCEEcCcEEEEECCEEEEEeCCccCC---CCCCeEEECCCCEEeeCceeHhhCcchhcc
Confidence 445678999999966 4443 3447889999999999999877654 256789999999999999999999865432
Q ss_pred cccccccCCCCCHHHHHHHHHHHHHcCCCCCeEEEeCCCCCCCCCCCCChHHhhhhCCCCeEEEEeCCCchhhhcHHHHH
Q 008063 118 QMARVKLRGVSHKDEFVRRVKEAVKNSKKGSWILGGGWNNDLWGGDLPMASWIDDITPHNPVWLSRMDGHMGLANSVALQ 197 (579)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~p~~~~ld~~~~~~p~~~~~~~~~~~~~n~~~~~ 197 (579)
.. ....... +...|+...
T Consensus 102 ~g--~~~~~~~------------------------------------~~~~~l~~~------------------------ 119 (479)
T 3hpa_A 102 RA--VPAAQNA------------------------------------ELFGWLTNL------------------------ 119 (479)
T ss_dssp CS--CTTTTTC------------------------------------CHHHHHHHH------------------------
T ss_pred cc--cccCCCc------------------------------------chHHHHhhh------------------------
Confidence 10 0000001 111111110
Q ss_pred HcCCCCCCCCCCCCeEEeCCCCCcCEEEhHhHHHHhcccCCCCCHHHHHHHHHHHHHHHHhcCccEEEeCCcCCCCCccc
Q 008063 198 LVGITNLSEDPNGGTIMKTSSGEPTGLLIDAAMKLILPWIPEVSVDERREALLRASNLALSRGVTTVVDFGRYYPGESVQ 277 (579)
Q Consensus 198 ~~g~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Git~v~~~~~~~~~~~~~ 277 (579)
.........++...........+++.|+|++.+.........
T Consensus 120 ------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~-- 161 (479)
T 3hpa_A 120 ------------------------------------YKIWAHLTPEMIEVSTLTAMAELLQSGCTTSSDHLYIYPNGS-- 161 (479)
T ss_dssp ------------------------------------HHHHTTCCHHHHHHHHHHHHHHHHTTTEEEEECCBCCCCTTC--
T ss_pred ------------------------------------hhhhhhcCHHHHHHHHHHHHHHHHHhCCceecceeeeccchh--
Confidence 001122334566667777888899999999998754322221
Q ss_pred cchHHHHHHHHHHhhcCCCeeEEEEc-cCccc-------------hh----hHHHHHHhcCCCCCCceEEceEEEEEcCc
Q 008063 278 LSWEDFADVYQWASYSEKMKIRVCLF-FPLET-------------WS----SLADLINKTGHVLSDWVYLGGVKAFADGS 339 (579)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~i~v~~~-~~~~~-------------~~----~~~~~~~~~~~~~~~~~~~~g~k~~~dg~ 339 (579)
.... ........+ +....... ..... .. .....................
T Consensus 162 -~~~~---~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 228 (479)
T 3hpa_A 162 -RLDD---SIGAAQRIG-MRFHASRGAMSVGQRDGGLPPDSVVEREPDILRDTQRLIETYHDEGRYAMLRVV-------- 228 (479)
T ss_dssp -CHHH---HHHHHHHHT-CEEEEEEEECC----------------CHHHHHHHHHHHHHHCCCSTTCSEEEE--------
T ss_pred -hHHH---HHHHHHHhc-chhhhhhheeeccccccCCCchhhhhhhhhHHHHHHHHHHHhhhhcccccceeE--------
Confidence 1222 222222211 11111110 00000 00 000000000000000000000
Q ss_pred cCCCcccccCCCCCCCCCCcccCCCHHHHHHHHHHHHHCCCeEEEEecch-HHHHHHHHHH----HHHHHhcCCCCCCce
Q 008063 340 LGSNSALFHEPYADEPHNYGLQVMELESLLSMTMASDKSGLQVAIHAIGD-RANDLVLDMY----KSVVVTTGKRDQRFR 414 (579)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~i~iH~~g~-~~~~~~~~~~----~~~~~~~~~~~~~~~ 414 (579)
..... ....+.+.+.++...+.+.|+++.+|+... .+........ .......+....+..
T Consensus 229 -----~~~~~----------~~~~~~~~~~~~~~~a~~~g~~~~~h~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 293 (479)
T 3hpa_A 229 -----VAPCS----------PFSVSRDLMRDAAVLAREYGVSLHTHLAENVNDIAYSREKFGMTPAEYAEDLGWVGHDVW 293 (479)
T ss_dssp -----EEESC----------TTTSCHHHHHHHHHHHHHHTCEEEEEESCSHHHHHC-------CHHHHHHHTTCCSTTEE
T ss_pred -----ecccc----------cccCCHHHHHHHHHHHHhcCCeEEeecccchHHHHHHHHHcCCchHHHHhhhccccccce
Confidence 00011 122678899999999999999999998643 2222222211 123344566677889
Q ss_pred EeeccCCChhhHHHHhhCCcEEEecccccccchhHHHHhhChhhhhhhhhhHHHHHHCCCeeeecCCCCCCC--CCHHHH
Q 008063 415 IEHAQHLASGTAARFGDQGIVASMQPQHLLDDADSARKKLGVDRAERESYLFQSLLANNALLALGSDWPVAD--INPLCA 492 (579)
Q Consensus 415 i~H~~~~~~~~~~~~~~~~i~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD~~~~~--~~~~~~ 492 (579)
+.|+.++.+.+.+++++.+.....+|.+... .. ....+.+.+.+.|+++++|||..... ...+..
T Consensus 294 ~~h~~~~~~~~~~~~~~~~~~~~~~p~~~~~--------~~-----~~~~~~~~~~~~~~~v~~gtD~~~~~~~~~~~~~ 360 (479)
T 3hpa_A 294 HAHCVQLDDAGIGLFARTGTGVAHCPCSNMR--------LA-----SGIAPVKKMRLAGVPVGLGVDGSASNDGAQMVAE 360 (479)
T ss_dssp EEECTTCCHHHHHHHHHHTCEEEECHHHHHH--------TT-----CCCCCHHHHHHHTCCEEECCCCTTSSCCCCHHHH
T ss_pred eeeeEecchhHHHHHHhcCCceeeccccccc--------cc-----cCccchhHHHhcCCcEEeeccccccCCCccHHHH
Confidence 9999999999999999999999999886541 11 44557889999999999999976543 444444
Q ss_pred HHHHHcccCCCCCCCCCCCCCCCHHHHHHHHcHHHHHhcccCCccccccCCCcccEEEeCCCC------CCCh-hhc---
Q 008063 493 IRTAMKRIPPGWDNAWIPSERISLTDALIAHTLSAARACFLENDVGSLSPGKIADFVILSTSS------WEDF-AAE--- 562 (579)
Q Consensus 493 ~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~npA~~lgl~~~~G~I~~G~~ADlvvld~~~------~~~~-~~~--- 562 (579)
.+.+..... ......++|++++|+++|.|||++||+++ +|+|+|||.|||||||.+. +.++ .++
T Consensus 361 ~~~~~~~~~-----~~~~~~~ls~~eal~~~T~~~A~~lgl~~-~G~I~~G~~ADlvv~D~~~~~~~~~~~dp~~~lv~~ 434 (479)
T 3hpa_A 361 VRQALLLQR-----VGFGPDAMTAREALEIATLGGAKVLNRDD-IGALKPGMAADFAAFDLRQPLFAGALHDPVAALVFC 434 (479)
T ss_dssp HHHHHHHHH-----HHHCTTSCCHHHHHHHTTHHHHHHHTCSS-SSSCSTTSBCCEEEEETTSGGGTTCTTSHHHHHHHS
T ss_pred HHHHHHHHh-----hhccccCCCHHHHHHHHHHHHHHHhCCCC-CccCCCCCcCCEEEEcCCCccccCCccCHHHHhhcc
Confidence 433321100 00134569999999999999999999975 8999999999999999773 3322 222
Q ss_pred cCCeEEEEEECCEEeC
Q 008063 563 VSASIEATYVSGVQAY 578 (579)
Q Consensus 563 ~~~~v~~v~v~G~~v~ 578 (579)
...+|.+||||||+||
T Consensus 435 ~~~~v~~tiV~G~~V~ 450 (479)
T 3hpa_A 435 APSQTAYTVVNGKVVV 450 (479)
T ss_dssp SCCCCSEEEETTEEEE
T ss_pred CCCCceEEEECCEEEE
Confidence 1458999999999997
|
| >3v7p_A Amidohydrolase family protein; iron binding site, enzyme functio initiative, EFI; HET: TLA; 1.35A {Nitratiruptor SP} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-33 Score=298.11 Aligned_cols=366 Identities=14% Similarity=0.152 Sum_probs=240.9
Q ss_pred EEEEcCeEEeCCCCCCeeeEEEEECCEEEEecChHHHHhhccCCCeEEeCCCCeeecccccccccccccCccccccccCC
Q 008063 47 LVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHFIPGGLQMARVKLRG 126 (579)
Q Consensus 47 ~likn~~v~~~~~~~~~~~~v~I~~GkI~~Ig~~~~~~~~~~~~~~viD~~g~~V~PG~ID~H~H~~~~~~~~~~~~~~~ 126 (579)
++|+|++|+++++ ..++++|+| ||||++||+..+.+.. .++.++||++|++|+|||||+|+|+.+.... +
T Consensus 2 ~~i~~~~v~~~~~-~~~~~~v~i-~g~I~~Vg~~~~~~~~-~~~~~vid~~g~~v~PGlId~H~H~~~~~~r-------g 71 (427)
T 3v7p_A 2 RIIKPFAILTPQT-IIQDKAVAF-DKKIEAIDTVENLIKK-YPNAAVEHDENSLLLPGFANPHLHLEFSANK-------A 71 (427)
T ss_dssp EEEEEEEEECSSS-EEESCEEEE-SSBEEEEECHHHHHHH-CTTSEEEEEEEEEEEECEEEEEECGGGTTCS-------S
T ss_pred EEEECCEEEcCCC-EEeCcEEEE-CCEEEEecChhhhccc-cCCceEEeCCCCEEecCEeecccCcchhhcc-------c
Confidence 5899999999987 557889999 9999999998766432 2567899999999999999999999765432 1
Q ss_pred CCCHHHHHHHHHHHHHcCCCCCeEEEeCCCCCCCCCCCCChHHhhhhCCCCeEEEEeCCCchhhhcHHHHHHcCCCCCCC
Q 008063 127 VSHKDEFVRRVKEAVKNSKKGSWILGGGWNNDLWGGDLPMASWIDDITPHNPVWLSRMDGHMGLANSVALQLVGITNLSE 206 (579)
Q Consensus 127 ~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~p~~~~ld~~~~~~p~~~~~~~~~~~~~n~~~~~~~g~~~~~~ 206 (579)
.....++..++...... .
T Consensus 72 ~~~~~~l~~wl~~~~~~--------------------------~------------------------------------ 89 (427)
T 3v7p_A 72 TLQYGDFIPWLYSVIRH--------------------------R------------------------------------ 89 (427)
T ss_dssp CSCCSSHHHHHHHHHHH--------------------------H------------------------------------
T ss_pred ccccCCHHHHHHHHHHh--------------------------H------------------------------------
Confidence 11111122222222100 0
Q ss_pred CCCCCeEEeCCCCCcCEEEhHhHHHHhcccCCCCCHHHHHHHHHHHHHHHHhcCccEEEeCCcCCCCCccccchHHHHHH
Q 008063 207 DPNGGTIMKTSSGEPTGLLIDAAMKLILPWIPEVSVDERREALLRASNLALSRGVTTVVDFGRYYPGESVQLSWEDFADV 286 (579)
Q Consensus 207 ~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Git~v~~~~~~~~~~~~~~~~~~~~~~ 286 (579)
...++++.+.....+...++++|+|++.++.... ..
T Consensus 90 -------------------------------~~~~~~~~~~~~~~~~~e~l~~GvTtv~d~~~~~----------~~--- 125 (427)
T 3v7p_A 90 -------------------------------EDLLPLCDGACLEQTLSSIIQTGTTAIGAISSYG----------ED--- 125 (427)
T ss_dssp -------------------------------HHHHHHSCHHHHHHHHHHHHHTTEEEEEEEESSS----------TT---
T ss_pred -------------------------------HhcCHHHHHHHHHHHHHHHHHhCCEEEEEecCcH----------HH---
Confidence 0011133455667788889999999999975320 11
Q ss_pred HHHHhhcCCCeeEEEEccCc----c-chh----hHHHHHHhcCCCCCCceEEceEEEEEcCccCCCcccccCCCCCCCCC
Q 008063 287 YQWASYSEKMKIRVCLFFPL----E-TWS----SLADLINKTGHVLSDWVYLGGVKAFADGSLGSNSALFHEPYADEPHN 357 (579)
Q Consensus 287 ~~~~~~~~~~~i~v~~~~~~----~-~~~----~~~~~~~~~~~~~~~~~~~~g~k~~~dg~~~~~~~~~~~~~~~~~~~ 357 (579)
.+...+ .+++....... . ... +..+............+ +.. ...+.++.
T Consensus 126 ~~a~~~---~Gir~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-----~~~---------~~~~~~~~----- 183 (427)
T 3v7p_A 126 LQACID---SALKVVYFNEVIGSNAATADVMYASFLERFHQSKKHENERF-----KAA---------VAIHSPYS----- 183 (427)
T ss_dssp HHHHHH---BSSEEEEEEEECBCCGGGHHHHHHHHHHHHHHHHTTCBTTE-----EEE---------EEECCTTT-----
T ss_pred HHHHHh---cCCeEEEeccccCCChhhhhHHHHHHHHHHHHhhhccCCce-----EEE---------EecCCCCc-----
Confidence 122222 23444432111 1 111 11111111111111111 111 11223333
Q ss_pred CcccCCCHHHHHHHHHHHHHCCCeEEEEecchHH-HHHHHHHHH-------H----------HHHhcCC-CCCCceEeec
Q 008063 358 YGLQVMELESLLSMTMASDKSGLQVAIHAIGDRA-NDLVLDMYK-------S----------VVVTTGK-RDQRFRIEHA 418 (579)
Q Consensus 358 ~~~~~~~~~~l~~~~~~a~~~g~~i~iH~~g~~~-~~~~~~~~~-------~----------~~~~~~~-~~~~~~i~H~ 418 (579)
++++.++++++.|+++|+++++|+.+... ...+.+.+. . .....+. .+.+..+.|+
T Consensus 184 -----~s~e~l~~~~~~A~~~g~~v~~H~~E~~~e~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~H~ 258 (427)
T 3v7p_A 184 -----VHYILAKRALDIAKKYGSLVSVHFMESRAEREWLDKGSGEFAKFFKEFLNQTRPVNDTKSFLELFKELHTLFVHM 258 (427)
T ss_dssp -----BCHHHHHHHHHHHHHHTCCEEEEESCSHHHHHHHHHSCSHHHHHHHHHTCCCSCSSCHHHHHHTTTTSEEEEEEC
T ss_pred -----CCHHHHHHHHHHHHhCCCCEEEEeCCCHHHHHHHHHhcCcchhhhhhhccCCCcccCHHHHHhhhcCCCEEEEEC
Confidence 68999999999999999999999986543 333322110 0 0010112 4568889999
Q ss_pred cCCChhhHHHHhhCCcEEEecccccccchhHHHHhhChhhhhhhhhhHHHHHHCCCeeeecCCCCCC--CCCHHHHHHHH
Q 008063 419 QHLASGTAARFGDQGIVASMQPQHLLDDADSARKKLGVDRAERESYLFQSLLANNALLALGSDWPVA--DINPLCAIRTA 496 (579)
Q Consensus 419 ~~~~~~~~~~~~~~~i~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD~~~~--~~~~~~~~~~~ 496 (579)
.++++++++++++.++.+++||.++. .++ ...++++.+ +|+++++|||++.+ +.+++.+++.+
T Consensus 259 ~~~~~~~~~~l~~~g~~~~~~p~s~~--------~~~-----~~~~~~~~~--~Gv~v~lgtD~~~~~~~~~~~~~~~~a 323 (427)
T 3v7p_A 259 VWANEEEIQTIASYNAHIIHCPISNR--------LLG-----NGVLDLEKI--KSIPYAIATDGLSSNYSLNMYEELKAA 323 (427)
T ss_dssp TTCCHHHHHHHHHSEEEEEECHHHHH--------HTT-----CCCCCTTTT--TTSCEEECCCCTTSCSCCCHHHHHHHH
T ss_pred CCCCHHHHHHHHHcCCEEEECHHHHH--------Hhc-----CCCCCHHHH--CCCeEEEeCCCCCCCCCCCHHHHHHHH
Confidence 99999999999999999999999875 233 334567777 99999999996543 58999999988
Q ss_pred HcccCCCCCCCCCCCCCCCHHHHHHHHcHHHHHhcccCCccccccCCCcccEEEeCCCCCC-Chhh------ccCCeEEE
Q 008063 497 MKRIPPGWDNAWIPSERISLTDALIAHTLSAARACFLENDVGSLSPGKIADFVILSTSSWE-DFAA------EVSASIEA 569 (579)
Q Consensus 497 ~~~~~~~~~~~~~~~~~ls~~~al~~~T~npA~~lgl~~~~G~I~~G~~ADlvvld~~~~~-~~~~------~~~~~v~~ 569 (579)
+.+... ....++++++++++|.|||+++|++ +|+|++|+.|||||+|.+... .+.+ ....+|..
T Consensus 324 ~~~~~~-------~~~~~~~~~~~~~~t~~~a~~~g~~--~g~l~~G~~Ad~~~~d~~~~~~~~~~~~~~~~~~~~~v~~ 394 (427)
T 3v7p_A 324 LFVHPN-------KEATTFAKELIIRATKAGYDALGFE--GGEIAVGKDADMQLIDLPEGLTNVEDLYLHVILHTTKPKK 394 (427)
T ss_dssp HHHSTT-------SCHHHHHHHHHHHHTHHHHHHHTCS--CSSCCTTSBCCEEEEECCTTCCCGGGHHHHHHHHCSSCSE
T ss_pred HHhccC-------CCcccCHHHHHHHHHHHHHHHhCCC--CceeCCCCccCEEEEcCCCccCCCccchHHHhcccCCccE
Confidence 764321 2234678999999999999999997 799999999999999988643 2111 12568999
Q ss_pred EEECCEEeCC
Q 008063 570 TYVSGVQAYP 579 (579)
Q Consensus 570 v~v~G~~v~~ 579 (579)
||++|++||.
T Consensus 395 v~v~G~~v~~ 404 (427)
T 3v7p_A 395 VYIQGEEHVR 404 (427)
T ss_dssp EEETTEEEEC
T ss_pred EEECCEEEEE
Confidence 9999999873
|
| >3mdu_A N-formimino-L-glutamate iminohydrolase; amonohydralase family, N-formimino-L-glutamate iminohydrolas guanidino-L-glutamate; HET: NGQ; 1.40A {Pseudomonas aeruginosa} PDB: 3mdw_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.5e-33 Score=294.09 Aligned_cols=200 Identities=19% Similarity=0.187 Sum_probs=156.2
Q ss_pred CCHHHHHHHHHHHHHCCCeEEEEec-chHHHHHHHHHHH----HHHHhcCCCCCCceEeeccCCChhhHHHHhhCCcEEE
Q 008063 363 MELESLLSMTMASDKSGLQVAIHAI-GDRANDLVLDMYK----SVVVTTGKRDQRFRIEHAQHLASGTAARFGDQGIVAS 437 (579)
Q Consensus 363 ~~~~~l~~~~~~a~~~g~~i~iH~~-g~~~~~~~~~~~~----~~~~~~~~~~~~~~i~H~~~~~~~~~~~~~~~~i~~~ 437 (579)
++++.++++++.|+ .|+++++|+. +..++...++.+. +.....+..+.++.+.|+.++++++++++++.|+.++
T Consensus 211 ~~~e~l~~~~~~A~-~g~~v~~H~~e~~~e~~~~~~~~g~~~v~~l~~~g~~~~~~~~~H~~~~~~~~i~~la~~g~~v~ 289 (453)
T 3mdu_A 211 VTPQQIATVLAAGH-DDLPVHIHIAEQQKEVDDCQAWSGRRPLQWLYENVAVDQRWCLVHATHADPAEVAAMARSGAVAG 289 (453)
T ss_dssp SCHHHHHHHHTSSC-TTSCEEEEESCSHHHHHHHHHHHSSCHHHHHHHHSCCCTTEEEEECCSCCHHHHHHHHHHTCEEE
T ss_pred CCHHHHHHHHHHHh-cCCCEEEEeCCCHHHHHHHHHHhCCCHHHHHHHcCCCCCCeEEEEcCCCCHHHHHHHHHcCCEEE
Confidence 78999999999999 9999999987 4456666665543 2345567778899999999999999999999999999
Q ss_pred ecccccccchhHHHHhhChhhhhhhhhhHHHHHHCCCeeeecCCCCCCCCCHHHHHHHHHcc--cC-CCCCCCCCCCCCC
Q 008063 438 MQPQHLLDDADSARKKLGVDRAERESYLFQSLLANNALLALGSDWPVADINPLCAIRTAMKR--IP-PGWDNAWIPSERI 514 (579)
Q Consensus 438 ~~p~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~l 514 (579)
+||.++. .++ ...+|++.++++|+++++|||++ .+.+++.+++.+... .. ......+....++
T Consensus 290 ~~P~sn~--------~lg-----~g~~p~~~~~~~Gv~v~lgtD~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (453)
T 3mdu_A 290 LCLSTEA--------NLG-----DGIFPATDFLAQGGRLGIGSDSH-VSLSVVEELRWLEYGQRLRDRKRNRLYRDDQPM 355 (453)
T ss_dssp ECHHHHH--------HTT-----CCCCCHHHHHHTTCEEEECCBTC-SCCCHHHHHHHHHHHHHHHHTCSCCSCBTTBCC
T ss_pred ECchhHh--------hcC-----CCCCCHHHHHHCCCEEEEECCCC-CCCCHHHHHHHHHHHHhhhccCCccccCcccCC
Confidence 9998764 334 45668999999999999999974 357888888877531 11 0111122334579
Q ss_pred CHHHHHHHHcHHHHHhcccCCccccccCCCcccEEEeCCCCCC----Chhhcc--------CCeEEEEEECCEEeCC
Q 008063 515 SLTDALIAHTLSAARACFLENDVGSLSPGKIADFVILSTSSWE----DFAAEV--------SASIEATYVSGVQAYP 579 (579)
Q Consensus 515 s~~~al~~~T~npA~~lgl~~~~G~I~~G~~ADlvvld~~~~~----~~~~~~--------~~~v~~v~v~G~~v~~ 579 (579)
+++++++++|.|||+++|+ .+|+|++||.|||||+|.+... +..++. ..+|..||++|++||.
T Consensus 356 ~~~~~~~~~t~~~a~~~~~--~~G~l~~G~~AD~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~~ 430 (453)
T 3mdu_A 356 IGRTLYDAALAGGAQALGQ--PIGSLAVGRRADLLVLDGNDPYLASAEGDALLNRWLFAGGDRQVRDVMVAGRWVVR 430 (453)
T ss_dssp HHHHHHHHHHHHHHHHHTS--SCSSCCTTSBCCEEEECTTCHHHHTCCHHHHHHHHHHHCCGGGEEEEEETTEEEEB
T ss_pred CHHHHHHHHHHHHHHHhCC--CCCccCCCCcCCEEEEeCCCccccCCCccChHHHheeeCCCCCeeEEEECCEEEEE
Confidence 9999999999999999999 4899999999999999987421 111211 3589999999999873
|
| >4ac7_C Urease subunit alpha; hydrolase, bacillus pasteurii; HET: CXM KCX FLC; 1.50A {Sporosarcina pasteurii} PDB: 1s3t_C* 2ubp_C* 3ubp_C* 1ubp_C* 4ubp_C* 1ie7_C* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-33 Score=297.13 Aligned_cols=351 Identities=22% Similarity=0.279 Sum_probs=224.3
Q ss_pred cCCCccEEEEcCeEEeCCCCCCeeeEEEEECCEEEEecChHHHH--------hhccCCCeEEeCCCCeeecccccccccc
Q 008063 41 TNLEADLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQ--------QLAADGTNVLNLQGKVVVPGFIDSHVHF 112 (579)
Q Consensus 41 ~~~~~~~likn~~v~~~~~~~~~~~~v~I~~GkI~~Ig~~~~~~--------~~~~~~~~viD~~g~~V~PG~ID~H~H~ 112 (579)
....++++|+|++|+++++ ...++|+|+||||++|++..+.. ...+++.++||++|++|+|||||+|+|+
T Consensus 63 ~~~~~dllI~n~~vvd~~g--~~~~dI~I~dG~I~~Ig~~~~~~~~~~v~~~~~~~~~~~vIDa~G~~v~PG~ID~HvH~ 140 (570)
T 4ac7_C 63 TENVLDLLLTNALILDYTG--IYKADIGVKDGYIVGIGKGGNPDIMDGVTPNMIVGTATEVIAAEGKIVTAGGIDTHVHF 140 (570)
T ss_dssp TTTBCSEEEEEEEEEETTE--EEEEEEEEETTEEEEEECCBCTTTCSSCCTTCBCCTTCEEEECTTCEEEECEEEEEEEC
T ss_pred ccCCCCEEEECeEEECCCC--cEEEEEEEECCEEEEeecCCCccccccccccccCCCCceEEeCCCCEEeeCEEeccccc
Confidence 3457899999999999765 36789999999999999753210 0012467899999999999999999998
Q ss_pred cccCccccccccCCCCCHHHHHHHHHHHHHcCCCCCeEEEeCCCCCCCCCCCCChHHhhhhCCCCeEEEEeCCCchhhhc
Q 008063 113 IPGGLQMARVKLRGVSHKDEFVRRVKEAVKNSKKGSWILGGGWNNDLWGGDLPMASWIDDITPHNPVWLSRMDGHMGLAN 192 (579)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~p~~~~ld~~~~~~p~~~~~~~~~~~~~n 192 (579)
..++
T Consensus 141 ~~Pg---------------------------------------------------------------------------- 144 (570)
T 4ac7_C 141 INPD---------------------------------------------------------------------------- 144 (570)
T ss_dssp CCTT----------------------------------------------------------------------------
T ss_pred CCcc----------------------------------------------------------------------------
Confidence 4321
Q ss_pred HHHHHHcCCCCCCCCCCCCeEEeCCCCCcCEEEhHhHHHHhcccCCCCCHHHHHHHHHHHHHHHHhcCccEEEeCCcCCC
Q 008063 193 SVALQLVGITNLSEDPNGGTIMKTSSGEPTGLLIDAAMKLILPWIPEVSVDERREALLRASNLALSRGVTTVVDFGRYYP 272 (579)
Q Consensus 193 ~~~~~~~g~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Git~v~~~~~~~~ 272 (579)
..+.+++.|+|++.+.+....
T Consensus 145 -----------------------------------------------------------~~~aAl~gGvTTvv~gg~~p~ 165 (570)
T 4ac7_C 145 -----------------------------------------------------------QVDVALANGITTLFGGGTGPA 165 (570)
T ss_dssp -----------------------------------------------------------HHHHHHHTTEEEEEEECSSSC
T ss_pred -----------------------------------------------------------hHHHHHhcCCeEEEecCcCcc
Confidence 124589999999997543111
Q ss_pred ---CCccccchHHHHHHHHHHhhcCCCeeEEEEccCc--cchhhHHHHHHhcCCCCCCceEEceEEEEEcCccCCCcccc
Q 008063 273 ---GESVQLSWEDFADVYQWASYSEKMKIRVCLFFPL--ETWSSLADLINKTGHVLSDWVYLGGVKAFADGSLGSNSALF 347 (579)
Q Consensus 273 ---~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~k~~~dg~~~~~~~~~ 347 (579)
+..+........+.. ++......+++.++... ....+..+..+. + ..++|.+.+
T Consensus 166 ~~~n~~p~~~~~~~l~~~--l~aa~~~~v~~~~~g~~~~~~l~el~el~~a-G--------a~gfK~~~~---------- 224 (570)
T 4ac7_C 166 EGSKATTVTPGPWNIEKM--LKSTEGLPINVGILGKGHGSSIAPIMEQIDA-G--------AAGLKIHED---------- 224 (570)
T ss_dssp HHHHHSSCCCHHHHHHHH--HHHHTTCSSEEEEEEECCCSSHHHHHHHHHH-T--------CCEEEEEGG----------
T ss_pred cccCCcCcCCcHHHHHHH--HHHhhhCCeeEEEEeccCCcCHHHHHHHHHc-C--------CCeEeeccC----------
Confidence 011111111111211 22223455666655432 222333333221 1 113444321
Q ss_pred cCCCCCCCCCCcccCCCHHHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhcCCCCCCceEeeccCCC-hhhH
Q 008063 348 HEPYADEPHNYGLQVMELESLLSMTMASDKSGLQVAIHAIGDRANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLA-SGTA 426 (579)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~i~iH~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~H~~~~~-~~~~ 426 (579)
+ ..+++.+.+.++.++++|+++.+|+.+..+...+.+.++.. .+.....+++.|+...+ ++.+
T Consensus 225 ---~----------~~~~~~L~~aL~~A~~~g~~V~iHae~l~e~g~Vedalea~---~Gr~ih~~HiEgag~~hapd~i 288 (570)
T 4ac7_C 225 ---W----------GATPASIDRSLTVADEADVQVAIHSDTLNEAGFLEDTLRAI---NGRVIHSFHVEGAGGGHAPDIM 288 (570)
T ss_dssp ---G----------CCCHHHHHHHHHHHHHHTCEEEEECCTTCSSCCHHHHHHHH---TTCCEEETTTTSTTSSSTTTGG
T ss_pred ---C----------CCCHHHHHHHHHHHHHcCCEEEEEcCCcchhhHHHHHHHHh---CCCcceeEeeeccccccChHHH
Confidence 1 15789999999999999999999998554333333333322 23222233444444444 7778
Q ss_pred HHHhhCCcEEEe-ccccc--c---------------------cchhHHHHhhChhhhhhhhhhHHHHHHCCCeeeecCCC
Q 008063 427 ARFGDQGIVASM-QPQHL--L---------------------DDADSARKKLGVDRAERESYLFQSLLANNALLALGSDW 482 (579)
Q Consensus 427 ~~~~~~~i~~~~-~p~~~--~---------------------~~~~~~~~~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD~ 482 (579)
+++...++..+. +|... . .+..+..+++. . +...+++.|++.|+.+++|||+
T Consensus 289 ~~~~~~~vlps~t~Pt~p~~~n~~~e~ld~l~v~hhl~~~i~~D~~~a~~Rir---~-~~i~a~~~L~d~G~~v~~gSD~ 364 (570)
T 4ac7_C 289 AMAGHPNVLPSSTNPTRPFTVNTIDEHLDMLMVCHHLKQNIPEDVAFADSRIR---P-ETIAAEDILHDLGIISMMSTDA 364 (570)
T ss_dssp GGGGSTTEEEBCCGGGSSCBTTHHHHHHHHHHHHTTCCTTCHHHHHHHHHHSC---H-HHHHHHHHHHHTTSSCBCCCCB
T ss_pred HHhccCCccccccCCCCCcccchhHHhhhheeeecccCccccchhHHHHhhhh---h-hhcccccchhhcCCEEEEECcc
Confidence 888888887765 34310 0 11112222332 3 5567899999999999999998
Q ss_pred CCCCC------CHHHHHHHH-HcccCCCCCCCCCCCCCCCHHHHHHHHcHHHHHhcccCCccccccCCCcccEEEeCCCC
Q 008063 483 PVADI------NPLCAIRTA-MKRIPPGWDNAWIPSERISLTDALIAHTLSAARACFLENDVGSLSPGKIADFVILSTSS 555 (579)
Q Consensus 483 ~~~~~------~~~~~~~~~-~~~~~~~~~~~~~~~~~ls~~~al~~~T~npA~~lgl~~~~G~I~~G~~ADlvvld~~~ 555 (579)
+.... ..|+....+ ..+....+. .+ ...++++++||+++|.|||+++|+++.+|+|++||.|||||||.++
T Consensus 365 p~~~~~ge~~~~~~~~a~~~~~~rg~l~~~-~~-~~~~~~~~eal~~~T~~~A~~lg~~~~~Gsi~~Gk~ADlvvld~d~ 442 (570)
T 4ac7_C 365 LAMGRAGEMVLRTWQTADKMKKQRGPLAEE-KN-GSDNFRLKRYVSKYTINPAIAQGIAHEVGSIEEGKFADLVLWEPKF 442 (570)
T ss_dssp TTSSCTTCHHHHHHHHHHHHHHHHCSCTTC-CT-TCCHHHHHHHHHHHTHHHHHHHTCTTTSSSCCTTSBCCEEEECGGG
T ss_pred cccCCcCcccCcHHHHHHHHHHhcCCCCCc-cc-cccCCCHHHHHHHHhHHHHHHhCCCCCCcccCCCCccCEEEECchh
Confidence 86441 233332222 222211111 11 4567999999999999999999999989999999999999999888
Q ss_pred CCChhhccCCeEEEEEECCEEeC
Q 008063 556 WEDFAAEVSASIEATYVSGVQAY 578 (579)
Q Consensus 556 ~~~~~~~~~~~v~~v~v~G~~v~ 578 (579)
+. .++..||++|++||
T Consensus 443 ~~-------~~v~~t~~~G~~v~ 458 (570)
T 4ac7_C 443 FG-------VKADRVIKGGIIAY 458 (570)
T ss_dssp TT-------TSCSEEEETTEEEE
T ss_pred cc-------CceEEEEECCEEEE
Confidence 74 36899999999997
|
| >4ubp_C Protein (urease (chain C)); bacillus pasteurii, nickel, acetohydroxamic acid, metalloenzyme, hydrolase; HET: KCX; 1.55A {Sporosarcina pasteurii} SCOP: b.92.1.1 c.1.9.2 PDB: 1s3t_C* 2ubp_C* 3ubp_C* 1ubp_C* 1ie7_C* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-33 Score=297.13 Aligned_cols=351 Identities=22% Similarity=0.279 Sum_probs=224.3
Q ss_pred cCCCccEEEEcCeEEeCCCCCCeeeEEEEECCEEEEecChHHHH--------hhccCCCeEEeCCCCeeecccccccccc
Q 008063 41 TNLEADLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQ--------QLAADGTNVLNLQGKVVVPGFIDSHVHF 112 (579)
Q Consensus 41 ~~~~~~~likn~~v~~~~~~~~~~~~v~I~~GkI~~Ig~~~~~~--------~~~~~~~~viD~~g~~V~PG~ID~H~H~ 112 (579)
....++++|+|++|+++++ ...++|+|+||||++|++..+.. ...+++.++||++|++|+|||||+|+|+
T Consensus 63 ~~~~~dllI~n~~vvd~~g--~~~~dI~I~dG~I~~Ig~~~~~~~~~~v~~~~~~~~~~~vIDa~G~~v~PG~ID~HvH~ 140 (570)
T 4ubp_C 63 TENVLDLLLTNALILDYTG--IYKADIGVKDGYIVGIGKGGNPDIMDGVTPNMIVGTATEVIAAEGKIVTAGGIDTHVHF 140 (570)
T ss_dssp TTTBCSEEEEEEEEEETTE--EEEEEEEEETTEEEEEECCBCTTTCTTCCTTCBCCTTCEEEECTTCEEEECEEEEEEEC
T ss_pred ccCCCCEEEECeEEECCCC--cEEEEEEEECCEEEEeecCCCccccccccccccCCCCceEEeCCCCEEeeCEEEcccCC
Confidence 3457899999999999765 36789999999999999753210 0012467899999999999999999998
Q ss_pred cccCccccccccCCCCCHHHHHHHHHHHHHcCCCCCeEEEeCCCCCCCCCCCCChHHhhhhCCCCeEEEEeCCCchhhhc
Q 008063 113 IPGGLQMARVKLRGVSHKDEFVRRVKEAVKNSKKGSWILGGGWNNDLWGGDLPMASWIDDITPHNPVWLSRMDGHMGLAN 192 (579)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~p~~~~ld~~~~~~p~~~~~~~~~~~~~n 192 (579)
..++
T Consensus 141 ~~Pg---------------------------------------------------------------------------- 144 (570)
T 4ubp_C 141 INPD---------------------------------------------------------------------------- 144 (570)
T ss_dssp CCTT----------------------------------------------------------------------------
T ss_pred CCcc----------------------------------------------------------------------------
Confidence 4321
Q ss_pred HHHHHHcCCCCCCCCCCCCeEEeCCCCCcCEEEhHhHHHHhcccCCCCCHHHHHHHHHHHHHHHHhcCccEEEeCCcCCC
Q 008063 193 SVALQLVGITNLSEDPNGGTIMKTSSGEPTGLLIDAAMKLILPWIPEVSVDERREALLRASNLALSRGVTTVVDFGRYYP 272 (579)
Q Consensus 193 ~~~~~~~g~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Git~v~~~~~~~~ 272 (579)
..+.+++.|+|++.+.+....
T Consensus 145 -----------------------------------------------------------~~~aAl~gGvTTvv~gg~~p~ 165 (570)
T 4ubp_C 145 -----------------------------------------------------------QVDVALANGITTLFGGGTGPA 165 (570)
T ss_dssp -----------------------------------------------------------HHHHHHHTTEEEEEEECCSSC
T ss_pred -----------------------------------------------------------hHHHHHhcCCeEEEecCcccc
Confidence 124589999999997543111
Q ss_pred ---CCccccchHHHHHHHHHHhhcCCCeeEEEEccCc--cchhhHHHHHHhcCCCCCCceEEceEEEEEcCccCCCcccc
Q 008063 273 ---GESVQLSWEDFADVYQWASYSEKMKIRVCLFFPL--ETWSSLADLINKTGHVLSDWVYLGGVKAFADGSLGSNSALF 347 (579)
Q Consensus 273 ---~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~k~~~dg~~~~~~~~~ 347 (579)
+..+........+.. ++......+++.++... ....+..+..+. + ..++|.+.+
T Consensus 166 ~~~n~~p~~~~~~~l~~~--l~aa~~~~v~~~~~g~~~~~~l~el~el~~a-G--------a~gfK~~~~---------- 224 (570)
T 4ubp_C 166 EGSKATTVTPGPWNIEKM--LKSTEGLPINVGILGKGHGSSIAPIMEQIDA-G--------AAGLKIHED---------- 224 (570)
T ss_dssp HHHHHSSCCCHHHHHHHH--HHHHTTCSSEEEEEEECCCSSHHHHHHHHHH-T--------CCEEEEEGG----------
T ss_pred ccCCCcCCCCcHHHHHHH--HHHhhhCCeeEEEEeccCCcCHHHHHHHHHc-C--------CCeEeeccC----------
Confidence 011111111111211 22223455666655432 222333333221 1 113444321
Q ss_pred cCCCCCCCCCCcccCCCHHHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhcCCCCCCceEeeccCCC-hhhH
Q 008063 348 HEPYADEPHNYGLQVMELESLLSMTMASDKSGLQVAIHAIGDRANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLA-SGTA 426 (579)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~i~iH~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~H~~~~~-~~~~ 426 (579)
+ ..+++.+.+.++.++++|+++.+|+.+..+...+.+.++.. .+.....+++.|+...+ ++.+
T Consensus 225 ---~----------~~~~~~L~~aL~~A~~~g~~V~iHae~l~e~g~Vedalea~---~Gr~ih~~HiEgag~~hapd~i 288 (570)
T 4ubp_C 225 ---W----------GATPASIDRSLTVADEADVQVAIHSDTLNEAGFLEDTLRAI---NGRVIHSFHVEGAGGGHAPDIM 288 (570)
T ss_dssp ---G----------CCCHHHHHHHHHHHHHHTCEEEEECCTTCSSCCHHHHHHHH---TTCCEEETTTTSTTSSSTTTGG
T ss_pred ---C----------CCCHHHHHHHHHHHHHcCCEEEEEcCCcchhhHHHHHHHHh---CCCceeEEEecccccccChHHH
Confidence 1 15789999999999999999999998554333333333322 23222233444444444 7778
Q ss_pred HHHhhCCcEEEe-ccccc--c---------------------cchhHHHHhhChhhhhhhhhhHHHHHHCCCeeeecCCC
Q 008063 427 ARFGDQGIVASM-QPQHL--L---------------------DDADSARKKLGVDRAERESYLFQSLLANNALLALGSDW 482 (579)
Q Consensus 427 ~~~~~~~i~~~~-~p~~~--~---------------------~~~~~~~~~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD~ 482 (579)
+++...++..+. +|... . .+..+..+++. . +...+++.|++.|+.+++|||+
T Consensus 289 ~~~~~~~vlps~t~Pt~p~~~n~~~e~ld~l~v~hhl~~~i~~D~~~a~~Rir---~-~~i~a~~~L~d~G~~v~~gSD~ 364 (570)
T 4ubp_C 289 AMAGHPNVLPSSTNPTRPFTVNTIDEHLDMLMVCHHLKQNIPEDVAFADSRIR---P-ETIAAEDILHDLGIISMMSTDA 364 (570)
T ss_dssp GGGGSTTEEEBCCSTTSSCBTTHHHHHHHHHHHHHTCCTTSHHHHHHHHHHSC---H-HHHHHHHHHHHTTSSCBCCCCB
T ss_pred HHhccCCccccccCCCCCcccchhHHhhhheeeecccCccccchhHHHHhhhh---h-hccccccchhhcCCEEEEECcc
Confidence 888888887765 34310 0 11112222332 3 5567899999999999999998
Q ss_pred CCCCC------CHHHHHHHH-HcccCCCCCCCCCCCCCCCHHHHHHHHcHHHHHhcccCCccccccCCCcccEEEeCCCC
Q 008063 483 PVADI------NPLCAIRTA-MKRIPPGWDNAWIPSERISLTDALIAHTLSAARACFLENDVGSLSPGKIADFVILSTSS 555 (579)
Q Consensus 483 ~~~~~------~~~~~~~~~-~~~~~~~~~~~~~~~~~ls~~~al~~~T~npA~~lgl~~~~G~I~~G~~ADlvvld~~~ 555 (579)
+.... ..|+....+ ..+....+. .+ ...++++++||+++|.|||+++|+++.+|+|++||.|||||||.++
T Consensus 365 p~~~~~ge~~~~~~~~a~~~~~~rg~l~~~-~~-~~~~~~~~eal~~~T~~~A~~lg~~~~~Gsi~~Gk~ADlvvld~d~ 442 (570)
T 4ubp_C 365 LAMGRAGEMVLRTWQTADKMKKQRGPLAEE-KN-GSDNFRLKRYVSKYTINPAIAQGIAHEVGSIEEGKFADLVLWEPKF 442 (570)
T ss_dssp TTSSCTTCHHHHHHHHHHHHHHHHCSCTTC-CS-SCCHHHHHHHHHTTTHHHHHHHTCTTTSSSCCTTSBCCEEEECGGG
T ss_pred cccCCcCcccCcHHHHHHHHHHhcCCCCCc-cc-cccCCCHHHHHHHHhHHHHHHhCCCCCCcccCCCCccCEEEECccc
Confidence 86441 233332222 222211111 11 4567999999999999999999999989999999999999999888
Q ss_pred CCChhhccCCeEEEEEECCEEeC
Q 008063 556 WEDFAAEVSASIEATYVSGVQAY 578 (579)
Q Consensus 556 ~~~~~~~~~~~v~~v~v~G~~v~ 578 (579)
+. .++..||++|++||
T Consensus 443 ~~-------~~v~~t~~~G~~v~ 458 (570)
T 4ubp_C 443 FG-------VKADRVIKGGIIAY 458 (570)
T ss_dssp TT-------TSCSEEEETTEEEE
T ss_pred cc-------CCeeEEEECCEEEE
Confidence 74 36899999999997
|
| >1p1m_A Hypothetical protein TM0936; putative metal dependent hydrolase, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: b.92.1.4 c.1.9.9 PDB: 2plm_A* 1j6p_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-33 Score=293.11 Aligned_cols=354 Identities=20% Similarity=0.186 Sum_probs=227.1
Q ss_pred EEEEcCeEEeCCCCCCeeeEEEEECCEEEEecChHHHHhhccCCCeEEeCCCCeeecccccccccccccCccccccccCC
Q 008063 47 LVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHFIPGGLQMARVKLRG 126 (579)
Q Consensus 47 ~likn~~v~~~~~~~~~~~~v~I~~GkI~~Ig~~~~~~~~~~~~~~viD~~g~~V~PG~ID~H~H~~~~~~~~~~~~~~~ 126 (579)
++|+|++|+++++.....++|+|+||||++|++.. ++.+ ||++|++|+|||||+|+|+...... +
T Consensus 1 ~li~n~~v~~~~~~~~~~~~v~I~~g~I~~vg~~~-------~~~~-iD~~g~~v~PG~ID~H~H~~~~~~~-------~ 65 (406)
T 1p1m_A 1 MIIGNCLILKDFSSEPFWGAVEIENGTIKRVLQGE-------VKVD-LDLSGKLVMPALFNTHTHAPMTLLR-------G 65 (406)
T ss_dssp CEEEEEEECCSTTSCCEEEEEEEETTEEEEEEESS-------CCCS-EECTTEEEEECEEEEEECGGGGGGT-------T
T ss_pred CEEEccEEEecCccccccceEEEECCEEEEeeCCC-------Ccce-ecCCCcEEeecccchhhccchhhhc-------c
Confidence 47999999998654457789999999999998642 2346 9999999999999999999764321 0
Q ss_pred CCCHHHHHHHHHHHHHcCCCCCeEEEeCCCCCCCCCCCCChHHhhhhCCCCeEEEEeCCCchhhhcHHHHHHcCCCCCCC
Q 008063 127 VSHKDEFVRRVKEAVKNSKKGSWILGGGWNNDLWGGDLPMASWIDDITPHNPVWLSRMDGHMGLANSVALQLVGITNLSE 206 (579)
Q Consensus 127 ~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~p~~~~ld~~~~~~p~~~~~~~~~~~~~n~~~~~~~g~~~~~~ 206 (579)
.. ...|..+|+...
T Consensus 66 ~~---------------------------------~~~~~~~~~~~~--------------------------------- 79 (406)
T 1p1m_A 66 VA---------------------------------EDLSFEEWLFSK--------------------------------- 79 (406)
T ss_dssp SS---------------------------------CSCCHHHHHHTT---------------------------------
T ss_pred cc---------------------------------CCCCHHHHHHhh---------------------------------
Confidence 00 011222222210
Q ss_pred CCCCCeEEeCCCCCcCEEEhHhHHHHhcccCCCCCHHHHHHHHHHHHHHHHhcCccEEEeCCcCCCCCccccchHHHHHH
Q 008063 207 DPNGGTIMKTSSGEPTGLLIDAAMKLILPWIPEVSVDERREALLRASNLALSRGVTTVVDFGRYYPGESVQLSWEDFADV 286 (579)
Q Consensus 207 ~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Git~v~~~~~~~~~~~~~~~~~~~~~~ 286 (579)
.....+..++++.......++..++++|+|++.+++. ... ..
T Consensus 80 --------------------------~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~d~~~---------~~~---~~ 121 (406)
T 1p1m_A 80 --------------------------VLPIEDRLTEKMAYYGTILAQMEMARHGIAGFVDMYF---------HEE---WI 121 (406)
T ss_dssp --------------------------HHHHHTTCCHHHHHHHHHHHHHHHHTTTEEEEEEEES---------SHH---HH
T ss_pred --------------------------hccchhcCCHHHHHHHHHHHHHHHHhcCcEEEEechh---------CHH---HH
Confidence 0000012355777777778888999999999999742 111 22
Q ss_pred HHHHhhcCCCeeEEEEccCc-----cc---hhhHHHHHHhcCCCCCCceEEceEEEEEcCccCCCcccccCCCCCCCCCC
Q 008063 287 YQWASYSEKMKIRVCLFFPL-----ET---WSSLADLINKTGHVLSDWVYLGGVKAFADGSLGSNSALFHEPYADEPHNY 358 (579)
Q Consensus 287 ~~~~~~~~~~~i~v~~~~~~-----~~---~~~~~~~~~~~~~~~~~~~~~~g~k~~~dg~~~~~~~~~~~~~~~~~~~~ 358 (579)
.+.+.+ .+++++...+. .. .....+..+...... +.+++.. ....++
T Consensus 122 ~~~~~~---~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~i~~~~---------~~~~~~------- 176 (406)
T 1p1m_A 122 AKAVRD---FGMRALLTRGLVDSNGDDGGRLEENLKLYNEWNGFE------GRIFVGF---------GPHSPY------- 176 (406)
T ss_dssp HHHHHH---HCCEEEEEEEECCBTTBCTTHHHHHHHHHHHHTTGG------GTEEEEE---------EECCTT-------
T ss_pred HHHHHH---cCCEEEEEcccccCCCCHHHHHHHHHHHHHHhhCCC------CcEEEEE---------ecCccC-------
Confidence 333322 23444321111 11 111111221100000 1122111 112222
Q ss_pred cccCCCHHHHHHHHHHHHHCCCeEEEEecch-HHHHHHHH--HHHHHHHhcCCCCCCceEeecc---CCChhhHHHHhhC
Q 008063 359 GLQVMELESLLSMTMASDKSGLQVAIHAIGD-RANDLVLD--MYKSVVVTTGKRDQRFRIEHAQ---HLASGTAARFGDQ 432 (579)
Q Consensus 359 ~~~~~~~~~l~~~~~~a~~~g~~i~iH~~g~-~~~~~~~~--~~~~~~~~~~~~~~~~~i~H~~---~~~~~~~~~~~~~ 432 (579)
.++++.+.++++.|++.|+++++|+.+. .+++.+++ .+. ....|..+ ..+.|+. +++++++++++
T Consensus 177 ---~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~g--~~~~g~~~--~~~~H~~~~~~~~~~~~~~~~-- 247 (406)
T 1p1m_A 177 ---LCSEEYLKRVFDTAKSLNAPVTIHLYETSKEEYDLEDILNIG--LKEVKTIA--AHCVHLPERYFGVLKDIPFFV-- 247 (406)
T ss_dssp ---TSCHHHHHHHHHHHHHTTCCEEEEESCSTTCCCCTHHHHTTT--TTTSCEEE--EECTTCCGGGTTTTTTSSEEE--
T ss_pred ---cCCHHHHHHHHHHHHHCCCcEEEEcCCCchHHHHHHHhhhCC--HhHcCcce--eEeeeccCcccCCHHHHHHHH--
Confidence 2678999999999999999999999854 33443333 111 11122111 5789999 99998877765
Q ss_pred CcEEEecccccccchhHHHHhhChhhhhhhhhhHHHHHHCCCeeeecCCCCCC--CCCHHHHHHHHHcccCCCCCCCCCC
Q 008063 433 GIVASMQPQHLLDDADSARKKLGVDRAERESYLFQSLLANNALLALGSDWPVA--DINPLCAIRTAMKRIPPGWDNAWIP 510 (579)
Q Consensus 433 ~i~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 510 (579)
.+||.++. .++ ....+++.+++.|+++++|||++.. ..+++.+++.++.+... ..
T Consensus 248 ----~~~p~~~~--------~~~-----~~~~~~~~~~~~Gv~~~lgtD~~~~~~~~~~~~~~~~~~~~~~~------~~ 304 (406)
T 1p1m_A 248 ----SHNPASNL--------KLG-----NGIAPVQRMIEHGMKVTLGTDGAASNNSLNLFFEMRLASLLQKA------QN 304 (406)
T ss_dssp ----EECHHHHH--------HTT-----CCCCCHHHHHHTTCEEEECCCCTTTTSCCCHHHHHHHHHHHHHT------TC
T ss_pred ----HhCcHHHh--------hcC-----CCcCcHHHHHhCCCeEEEECCCCcCCCCCCHHHHHHHHHHHhcc------cC
Confidence 66776432 223 3455889999999999999998754 36888888877643210 01
Q ss_pred CCCCCHHHHHHHHcHHHHHhcccCCccccccCCCcccEEEeCCCCCC--Chhhcc--------CCeEEEEEECCEEeC
Q 008063 511 SERISLTDALIAHTLSAARACFLENDVGSLSPGKIADFVILSTSSWE--DFAAEV--------SASIEATYVSGVQAY 578 (579)
Q Consensus 511 ~~~ls~~~al~~~T~npA~~lgl~~~~G~I~~G~~ADlvvld~~~~~--~~~~~~--------~~~v~~v~v~G~~v~ 578 (579)
..+++++++++++|.|||+++|+++ |+|+|||.|||||+|.+++. +..+.. ..+|..||++|++||
T Consensus 305 ~~~ls~~~al~~~T~~~A~~lgl~~--G~l~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~ 380 (406)
T 1p1m_A 305 PRNLDVNTCLKMVTYDGAQAMGFKS--GKIEEGWNADLVVIDLDLPEMFPVQNIKNHLVHAFSGEVFATMVAGKWIYF 380 (406)
T ss_dssp TTSSCHHHHHHHHTHHHHHHHTCSC--SSCCTTSBCCEEEEECCSGGGCSGGGHHHHHHHTCCSCCSEEEETTEEEEE
T ss_pred CCCCCHHHHHHHHHHHHHHHhCCCC--cccCCCCcccEEEEeCCccccCCccChHHHheEecCCCCceEEEECCEEEE
Confidence 4579999999999999999999986 99999999999999999643 212211 468999999999986
|
| >3ooq_A Amidohydrolase; structural genomics, protein structure INI NEW YORK structural genomix research consortium, NYSGXRC, H PSI-2; 2.06A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-32 Score=287.27 Aligned_cols=177 Identities=21% Similarity=0.264 Sum_probs=138.3
Q ss_pred HHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhcCCCCCCceEeeccCCChhhHHHHhhCCcEEEecccccccch
Q 008063 368 LLSMTMASDKSGLQVAIHAIGDRANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLASGTAARFGDQGIVASMQPQHLLDDA 447 (579)
Q Consensus 368 l~~~~~~a~~~g~~i~iH~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~H~~~~~~~~~~~~~~~~i~~~~~p~~~~~~~ 447 (579)
..+.+..+.+.++++.+|+.+...+...++..++. +.+..+.|+...++ +++++++.|+.+++||.+.....
T Consensus 209 ~~e~l~~~~~~~~~v~iHa~~~~~i~~~~~~~~~~-------g~~~~i~H~~~~~~-~~~~l~~~gv~v~~~P~~~~~~~ 280 (396)
T 3ooq_A 209 KMEVGEMVLRKKIPARMHAHRADDILTAIRIAEEF-------GFNLVIEHGTEAYK-ISKVLAEKKIPVVVGPLLTFRTK 280 (396)
T ss_dssp HHHHHHHHHTTSSCEEEEECSHHHHHHHHHHHHHH-------TCCEEEEECTTGGG-GHHHHHHHTCCEEECCCSSCCCS
T ss_pred hHHHHHHHHcCCCcEEEEECchhHHHHHHHHHHHc-------CCCEEEecCchHHH-HHHHHHHCCCCEEECcccccccc
Confidence 34445555689999999999887776666655543 23679999998765 59999999999999997654221
Q ss_pred hHHHHhhChhhhhhhhhhHHHHHHCCCeeeecCCCCCCCCCHHH-HHHHHHcccCCCCCCCCCCCCCCCHHHHHHHHcHH
Q 008063 448 DSARKKLGVDRAERESYLFQSLLANNALLALGSDWPVADINPLC-AIRTAMKRIPPGWDNAWIPSERISLTDALIAHTLS 526 (579)
Q Consensus 448 ~~~~~~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~n 526 (579)
. .+ +. ....+++.++++|+++++|||++..+...+. .+..+ .+.+++++++|+++|.|
T Consensus 281 ~----~~---~~-~~~~~~~~l~~~Gv~v~lgtD~~~~~~~~l~~~~~~~-------------~~~gl~~~~al~~~T~n 339 (396)
T 3ooq_A 281 L----EL---KD-LTMETIAKLLKDGVLIALMCDHPVIPLEFATVQAATA-------------MRYGAKEEDLLKILTVN 339 (396)
T ss_dssp G----GG---TT-CCTTHHHHHHHTTCCEEECCTTTTSCGGGHHHHHHHG-------------GGGTCCHHHHHHTTTHH
T ss_pred h----hH---Hh-hhhHHHHHHHHCCCEEEEEcCCCccCccHHHHHHHHH-------------HHcCCCHHHHHHHHHHH
Confidence 1 11 11 4566899999999999999999876644442 22222 12469999999999999
Q ss_pred HHHhcccCCccccccCCCcccEEEeCCCCCCChhhccCCeEEEEEECCEEeC
Q 008063 527 AARACFLENDVGSLSPGKIADFVILSTSSWEDFAAEVSASIEATYVSGVQAY 578 (579)
Q Consensus 527 pA~~lgl~~~~G~I~~G~~ADlvvld~~~~~~~~~~~~~~v~~v~v~G~~v~ 578 (579)
||++||+++++|+|++||.|||||+|.||++. ..+|..||++|++||
T Consensus 340 ~A~~lg~~~~~G~i~~G~~ADlvv~d~~~~~~-----~~~v~~v~~~G~~v~ 386 (396)
T 3ooq_A 340 PAKILGLEDRIGSIEPGKDADLVVWSGHPFDM-----KSVVERVYIDGVEVF 386 (396)
T ss_dssp HHHHTTCTTTSSSCCTTSBCCEEEESSCTTST-----TCCEEEEEETTEEEE
T ss_pred HHHHhCCCCCeeeECCCCcCCEEEECCCcccc-----ccceeEEEECCEEEe
Confidence 99999999989999999999999999999874 348999999999986
|
| >3sfw_A Dihydropyrimidinase; hydrolase, zinc binding; HET: KCX; 1.73A {Brevibacillus agri} PDB: 1yny_A 1k1d_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-31 Score=285.19 Aligned_cols=363 Identities=18% Similarity=0.216 Sum_probs=223.9
Q ss_pred ccEEEEcCeEEeCCCCCCeeeEEEEECCEEEEecChHHHHhhccCCCeEEeCCCCeeecccccccccccccCcccccccc
Q 008063 45 ADLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHFIPGGLQMARVKL 124 (579)
Q Consensus 45 ~~~likn~~v~~~~~~~~~~~~v~I~~GkI~~Ig~~~~~~~~~~~~~~viD~~g~~V~PG~ID~H~H~~~~~~~~~~~~~ 124 (579)
|+++|+|++|+++++ ...++|+|+||||++|++..+ +++.++||++|++|+|||||+|+|+..+..
T Consensus 1 M~~~i~n~~v~~~~~--~~~~~v~i~~g~I~~i~~~~~-----~~~~~viD~~g~~v~PG~ID~H~H~~~~~~------- 66 (461)
T 3sfw_A 1 MKKWIRNGTVVTASD--TYQADVLIDGEKVVAIGSDLQ-----ATDAEVIDATGYYLLPGGIDPHTHLDMPFG------- 66 (461)
T ss_dssp CEEEEESCEEECSSC--EEECEEEEETTEEEEEESCCC-----CSSCEEEECTTCEEEECEEEEEECTTCEET-------
T ss_pred CcEEEECeEEECCCC--cEEEEEEEECCEEEEEeCCCC-----CCCCeEEECCCCEEEeeeEEeEeccCcCCC-------
Confidence 578999999999765 367799999999999997542 256789999999999999999999854310
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCCCeEEEeCCCCCCCCCCCCChHHhhhhCCCCeEEEEeCCCchhhhcHHHHHHcCCCCC
Q 008063 125 RGVSHKDEFVRRVKEAVKNSKKGSWILGGGWNNDLWGGDLPMASWIDDITPHNPVWLSRMDGHMGLANSVALQLVGITNL 204 (579)
Q Consensus 125 ~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~p~~~~ld~~~~~~p~~~~~~~~~~~~~n~~~~~~~g~~~~ 204 (579)
+ ...
T Consensus 67 -----------------------------~---------~~~-------------------------------------- 70 (461)
T 3sfw_A 67 -----------------------------G---------TVT-------------------------------------- 70 (461)
T ss_dssp -----------------------------T---------EEC--------------------------------------
T ss_pred -----------------------------C---------ccc--------------------------------------
Confidence 0 000
Q ss_pred CCCCCCCeEEeCCCCCcCEEEhHhHHHHhcccCCCCCHHHHHHHHHHHHHHHHhcCccEEEeCCcCCCCCccccchHHHH
Q 008063 205 SEDPNGGTIMKTSSGEPTGLLIDAAMKLILPWIPEVSVDERREALLRASNLALSRGVTTVVDFGRYYPGESVQLSWEDFA 284 (579)
Q Consensus 205 ~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Git~v~~~~~~~~~~~~~~~~~~~~ 284 (579)
.+.+....+.+++.|+|++.++....+. .......
T Consensus 71 -----------------------------------------~e~~~~~~~~~~~~GvTt~~~~~~~~~~----~~~~~~~ 105 (461)
T 3sfw_A 71 -----------------------------------------SDNFFTGTKAAAFGGTTSIVDFCLTSKG----ESLHSAI 105 (461)
T ss_dssp -----------------------------------------SCCHHHHHHHHHHTTEEEEEEEECCCTT----SCHHHHH
T ss_pred -----------------------------------------HhHHHHHHHHHHhCCEEEEEccCCCCCc----chHHHHH
Confidence 0012335566889999999997643222 2233333
Q ss_pred HHHHHHhhcCCCeeEEEEccCcc--chh---hHHHHHHhcCCCCCCceEEceEEEEEcCccCCCcccccCCCCCCCCCCc
Q 008063 285 DVYQWASYSEKMKIRVCLFFPLE--TWS---SLADLINKTGHVLSDWVYLGGVKAFADGSLGSNSALFHEPYADEPHNYG 359 (579)
Q Consensus 285 ~~~~~~~~~~~~~i~v~~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~~g~k~~~dg~~~~~~~~~~~~~~~~~~~~~ 359 (579)
+....... ....+++..+.... ..+ +..+..+. ....++|++.+. . +
T Consensus 106 ~~~~~~a~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--------~G~~~ik~~~~~-------------~------~ 157 (461)
T 3sfw_A 106 ATWHEKAR-GKAVIDYGFHLMVSDANDHVLEELESVVNN--------EGITSLKVFMAY-------------K------N 157 (461)
T ss_dssp HHHHHHHT-TTCSSEEEEEEECSCCCHHHHHHHHHHHHT--------SCCCEEEEESSS-------------T------T
T ss_pred HHHHHHhh-cCcEEEEEEEEEEeCCCHHHHHHHHHHHHh--------CCCCEEEEEEec-------------C------C
Confidence 33322222 22333433322221 111 22222221 012234544321 0 1
Q ss_pred ccCCCHHHHHHHHHHHHHCCCeEEEEecchHHHHHHHH------------------------HHHHHHHhcCCCCCCceE
Q 008063 360 LQVMELESLLSMTMASDKSGLQVAIHAIGDRANDLVLD------------------------MYKSVVVTTGKRDQRFRI 415 (579)
Q Consensus 360 ~~~~~~~~l~~~~~~a~~~g~~i~iH~~g~~~~~~~~~------------------------~~~~~~~~~~~~~~~~~i 415 (579)
....+.+.+.++++.++++|.++.+|+.....+....+ ...+........+.+.++
T Consensus 158 ~~~~~~~~l~~~~~~a~~~g~~v~~Hae~~~~~~~~~~~~~~~G~~~~~~~~~~~p~~~e~~av~~~~~la~~~g~~~hi 237 (461)
T 3sfw_A 158 VLMADDETLFKTLIRAKELGALVQVHAENGDVLDYLTKQALAEGNTDPIYHAYTRPPEAEGEATGRAIALTALADAQLYV 237 (461)
T ss_dssp TTBCCHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHHHHHHHTTCCSTHHHHHTSCHHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred CcccCHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHhcCCCChhHhcccCCHHHHHHHHHHHHHHHHHhCCCEEE
Confidence 12368899999999999999999999875544332211 111111111112446666
Q ss_pred eeccCCCh-hhHHHHhhCCc--EEEecccccccchhHHHH---------hhChhhhhhhhhhHHHHHHCCCeeeecCCCC
Q 008063 416 EHAQHLAS-GTAARFGDQGI--VASMQPQHLLDDADSARK---------KLGVDRAERESYLFQSLLANNALLALGSDWP 483 (579)
Q Consensus 416 ~H~~~~~~-~~~~~~~~~~i--~~~~~p~~~~~~~~~~~~---------~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD~~ 483 (579)
.|...... +.++++++.|+ ++.+||++.....+.+.. ..++.|.......+...++.|++++++||+.
T Consensus 238 ~H~s~~~~l~~i~~ak~~G~~vt~e~~ph~l~l~~~~~~~~~~~~~~~~~~Pplr~~~~~~aL~~~l~~G~~~~i~sD~~ 317 (461)
T 3sfw_A 238 VHVSCADAVRRIAEAREKGWNVYGETCPQYLVLDITALEKPDFEGAKYVWSPPLREKWNQDVLWSALKNGILQTVGSDHC 317 (461)
T ss_dssp CSCCSHHHHHHHHHHHHTTCEEEEEECHHHHHCCGGGGGCTTTGGGGGCCSSCCCCTHHHHHHHHHHHTTSSCEECCCBC
T ss_pred EecCcHHHHHHHHHHHhcCCcEEEeeccceEEEcHHHhcCccccCCcEEEcCCCCChHHHHHHHHHHhcCCceEEECCCC
Confidence 66553222 55666677765 458899876554443321 2244444455566788999999999999976
Q ss_pred CCCCC--------HH-----------HHHHHHHcccCCCCCCCCCCCCCCCHHHHHHHHcHHHHHhcccCCccccccCCC
Q 008063 484 VADIN--------PL-----------CAIRTAMKRIPPGWDNAWIPSERISLTDALIAHTLSAARACFLENDVGSLSPGK 544 (579)
Q Consensus 484 ~~~~~--------~~-----------~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~npA~~lgl~~~~G~I~~G~ 544 (579)
..... .+ ..+...+.. +....+++++++++++|.|||+++|+++.+|+|++|+
T Consensus 318 p~~~~~~k~~~~~~~~~~~~G~~g~e~~~~~~~~~--------~~~~~~~~~~~~~~~~t~~~a~~~g~~~~~G~l~~G~ 389 (461)
T 3sfw_A 318 PFNFSGQKELGRRDFTKIPNGGPIIEDRMTILFSE--------GVRKGKISLNQFVDITSTKVAKLFGMFPQKGTIAVGS 389 (461)
T ss_dssp CCCTTTTGGGGTTCGGGSCCCBCCTTTHHHHHHHH--------TTTTTSSCHHHHHHHHTHHHHHHHTCTTTSSSCSTTS
T ss_pred CCCchhhhhcccCCHhhCCCCCccHHHHHHHHHHH--------HHHcCCCCHHHHHHHHhHHHHHHcCCCCCCCccCCCC
Confidence 44311 11 111111111 1134569999999999999999999977799999999
Q ss_pred cccEEEeCCCC-CC-Chhhcc-------------CCeEEEEEECCEEeC
Q 008063 545 IADFVILSTSS-WE-DFAAEV-------------SASIEATYVSGVQAY 578 (579)
Q Consensus 545 ~ADlvvld~~~-~~-~~~~~~-------------~~~v~~v~v~G~~v~ 578 (579)
.|||||+|.+. +. +.+++. ..+|..||++|++||
T Consensus 390 ~Ad~~~~d~~~~~~~~~~~~~~~~~~sp~~g~~~~~~v~~t~v~G~~v~ 438 (461)
T 3sfw_A 390 DADIVLFDPTVQRTISVETHHMNVDYNPFEGMQVHGDVISVLSRGAFVV 438 (461)
T ss_dssp BCCEEEEEEEEEEECCTTTCCSSSSCCTTTTCEEEEEEEEEEETTEEEE
T ss_pred cCCEEEEcCCCCEEEchHHcccccCCCCCCCCEecceEEEEEECCEEEE
Confidence 99999999772 22 222221 248999999999997
|
| >1gkr_A Hydantoinase, non-ATP dependent L-selective hydantoinase; hydrolase, dihydropyrimidinase, cyclic amidase; HET: KCX; 2.60A {Arthrobacter aurescens} SCOP: b.92.1.3 c.1.9.6 | Back alignment and structure |
|---|
Probab=100.00 E-value=9.1e-32 Score=286.72 Aligned_cols=361 Identities=17% Similarity=0.177 Sum_probs=218.7
Q ss_pred ccEEEEcCeEEeCCCCCCeeeEEEEECCEEEEecChHHHHhhccCCCeEEeCCCCeeecccccccccccccCcccccccc
Q 008063 45 ADLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHFIPGGLQMARVKL 124 (579)
Q Consensus 45 ~~~likn~~v~~~~~~~~~~~~v~I~~GkI~~Ig~~~~~~~~~~~~~~viD~~g~~V~PG~ID~H~H~~~~~~~~~~~~~ 124 (579)
++++|+|++|+++++. ..++|+|+||||++|++..+. +.+.++||++|++|+|||||+|+|+...+.
T Consensus 2 ~~~li~~~~v~~~~~~--~~~~v~I~~g~I~~ig~~~~~----~~~~~viD~~g~~v~PGlID~H~H~~~~~~------- 68 (458)
T 1gkr_A 2 FDVIVKNCRLVSSDGI--TEADILVKDGKVAAISADTSD----VEASRTIDAGGKFVMPGVVDEHVHIIDMDL------- 68 (458)
T ss_dssp EEEEEEEEEEEETTEE--EEEEEEEETTEEEEEESCCTT----CCEEEEEECTTCEEEECEEEEEEECCCGGG-------
T ss_pred ceEEEECcEEECCCCc--eeeeEEEECCEEEEecCCCCC----CCCCeEEeCCCCEEecCEEEeeecccCCCC-------
Confidence 4689999999998753 678999999999999875321 134579999999999999999999853210
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCCCeEEEeCCCCCCCCCCCCChHHhhhhCCCCeEEEEeCCCchhhhcHHHHHHcCCCCC
Q 008063 125 RGVSHKDEFVRRVKEAVKNSKKGSWILGGGWNNDLWGGDLPMASWIDDITPHNPVWLSRMDGHMGLANSVALQLVGITNL 204 (579)
Q Consensus 125 ~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~p~~~~ld~~~~~~p~~~~~~~~~~~~~n~~~~~~~g~~~~ 204 (579)
...
T Consensus 69 ---------------------------------------~~~-------------------------------------- 71 (458)
T 1gkr_A 69 ---------------------------------------KNR-------------------------------------- 71 (458)
T ss_dssp ---------------------------------------TTT--------------------------------------
T ss_pred ---------------------------------------CCc--------------------------------------
Confidence 000
Q ss_pred CCCCCCCeEEeCCCCCcCEEEhHhHHHHhcccCCCCCHHHHHHHHHHHHHHHHhcCccEEEeCC-cCCCCCccccchHHH
Q 008063 205 SEDPNGGTIMKTSSGEPTGLLIDAAMKLILPWIPEVSVDERREALLRASNLALSRGVTTVVDFG-RYYPGESVQLSWEDF 283 (579)
Q Consensus 205 ~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Git~v~~~~-~~~~~~~~~~~~~~~ 283 (579)
+ + .+....+.++++|+|++.+++ +..+.. ...+.+
T Consensus 72 ---~----------------------------------~----~~~~~~~~~~~~GvTtv~~~~~~~~~~~---~~~~~~ 107 (458)
T 1gkr_A 72 ---Y----------------------------------G----RFELDSESAAVGGITTIIEMPITFPPTT---TLDAFL 107 (458)
T ss_dssp ---S----------------------------------C----CHHHHHHHHHHHTEEEEEECSCSSSCSC---SHHHHH
T ss_pred ---h----------------------------------h----HHHHHHHHHHcCCEEEEEeCCCCCCCCC---CcHHHH
Confidence 0 0 012244567899999999986 322211 123333
Q ss_pred HHHHHHHhhcCCCeeEEEEccCccchhhHHHHHHhcCCCCCCceEEceEEEEEcCccCCCcccccCCCCCCCCCCcccCC
Q 008063 284 ADVYQWASYSEKMKIRVCLFFPLETWSSLADLINKTGHVLSDWVYLGGVKAFADGSLGSNSALFHEPYADEPHNYGLQVM 363 (579)
Q Consensus 284 ~~~~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~k~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (579)
....+...... ....++........++..+.... . ..++|++.+... .+ .....
T Consensus 108 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~----g-----~~~i~~~~~~~~-----------~~-----~~~~~ 161 (458)
T 1gkr_A 108 EKKKQAGQRLK-VDFALYGGGVPGNLPEIRKMHDA----G-----AVGFKSMMAASV-----------PG-----MFDAV 161 (458)
T ss_dssp HHHHHHHHHCS-SEEEEEEECCTTCHHHHHHHHHT----T-----CCEEEEESSCSB-----------TT-----TBCBC
T ss_pred HHHHHHhhhCc-eeEEEEeccCCCCHHHHHHHHHc----C-----CcEEEEeecccC-----------CC-----CcccC
Confidence 33444444333 32222211111222333333221 1 123454432110 00 02236
Q ss_pred CHHHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHH------------------------H---HHHhcCCCCCCceEe
Q 008063 364 ELESLLSMTMASDKSGLQVAIHAIGDRANDLVLDMYK------------------------S---VVVTTGKRDQRFRIE 416 (579)
Q Consensus 364 ~~~~l~~~~~~a~~~g~~i~iH~~g~~~~~~~~~~~~------------------------~---~~~~~~~~~~~~~i~ 416 (579)
+.+.++++++.|++++.++.+|+.....++..++.+. + ..... +.+.++.
T Consensus 162 ~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~G~~~~~~h~~~~~~~~~~~~~~~~~~la~~~---g~~~h~~ 238 (458)
T 1gkr_A 162 SDGELFEIFQEIAACGSVIVVHAENETIIQALQKQIKAAGGKDMAAYEASQPVFQENEAIQRALLLQKEA---GCRLIVL 238 (458)
T ss_dssp CHHHHHHHHHHHHHHTCEEEEECCCHHHHHHHHHHHHHTTCCSHHHHHHHSCHHHHHHHHHHHHHHHHHH---CCEEEEC
T ss_pred CHHHHHHHHHHHHHcCCEEEEECCCHHHHHHHHHHHhhcCccchhhccccCCHHHHHHHHHHHHHHHHHh---CCCEEEE
Confidence 8899999999999999999999986554433222111 1 11112 2234555
Q ss_pred eccCCChhhHHHHh---hCC--cEEEecccccccchhHHHH------hhChhhhhhhhhhHHHHHHCCCeeeecCCCCCC
Q 008063 417 HAQHLASGTAARFG---DQG--IVASMQPQHLLDDADSARK------KLGVDRAERESYLFQSLLANNALLALGSDWPVA 485 (579)
Q Consensus 417 H~~~~~~~~~~~~~---~~~--i~~~~~p~~~~~~~~~~~~------~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD~~~~ 485 (579)
|+.. ..+++.+. +.| +.+.+||.+.....+.+.. ..++.|......++..+++.|+++++|||....
T Consensus 239 H~~~--~~~~~~i~~~~~~G~~v~~~~~p~~~~~~~~~~~~~~~~~~~~pp~r~~~~~~~l~~~~~~G~~~~lgtD~~~~ 316 (458)
T 1gkr_A 239 HVSN--PDGVELIHQAQSEGQDVHCESGPQYLNITTDDAERIGPYMKVAPPVRSAEMNIRLWEQLENGLIDTLGSDHGGH 316 (458)
T ss_dssp CCCS--HHHHHHHHHHHHTTCCEEEEECHHHHSCCGGGHHHHGGGGCCSSCCCCHHHHHHHHHHHHHTCCCEECCCEECC
T ss_pred eCCC--HHHHHHHHHHHHCCCcEEEEEchHHheeCHHHhhccCceEEEcCCCCCHHHHHHHHHHHhCCCceEEEeCCCCC
Confidence 5542 34444443 365 7888899876544333321 122222224456778899999999999997432
Q ss_pred C--------CCHHH----------HHHHHHcccCCCCCCCCCCCCCCCHHHHHHHHcHHHHHhcccCCccccccCCCccc
Q 008063 486 D--------INPLC----------AIRTAMKRIPPGWDNAWIPSERISLTDALIAHTLSAARACFLENDVGSLSPGKIAD 547 (579)
Q Consensus 486 ~--------~~~~~----------~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~npA~~lgl~~~~G~I~~G~~AD 547 (579)
. .+.+. .+...+... ....++|++++++++|.|||++||+++.+|+|++||.||
T Consensus 317 ~~~~k~~g~~~~~~~~~~~~g~~~~l~~~~~~~--------~~~~~l~~~~al~~~T~~~A~~lgl~~~~G~l~~G~~AD 388 (458)
T 1gkr_A 317 PVEDKEPGWKDVWKAGNGALGLETSLPMMLTNG--------VNKGRLSLERLVEVMCEKPAKLFGIYPQKGTLQVGSDAD 388 (458)
T ss_dssp CGGGTGGGGTCGGGSCCCBCCTTTHHHHHHHHT--------GGGTSSCHHHHHHHHTHHHHHHHTCTTTSSSCCTTSBCC
T ss_pred ChHHhccccCCHhHCCCCcccHHHHHHHHHHHH--------HHhCCCCHHHHHHHHhhhHHHHhCCCCCCccCCCCCcCC
Confidence 2 12221 111111110 122369999999999999999999987799999999999
Q ss_pred EEEeCCCCC-C-Chhhcc-------------CCeEEEEEECCEEeC
Q 008063 548 FVILSTSSW-E-DFAAEV-------------SASIEATYVSGVQAY 578 (579)
Q Consensus 548 lvvld~~~~-~-~~~~~~-------------~~~v~~v~v~G~~v~ 578 (579)
|||+|.++. . +..++. ..+|..||++|++||
T Consensus 389 lvv~d~~~~~~~~~~~~~~~~~~~~~~g~~~~~~v~~v~v~G~~v~ 434 (458)
T 1gkr_A 389 LLILDLDIDTKVDASQFRSLHKYSPFDGMPVTGAPVLTMVRGTVVA 434 (458)
T ss_dssp EEEEESCCCEECCGGGCSSSCCCCTTTTCEECCEEEEEEETTEEEE
T ss_pred EEEEcCCcceEEcHHHccccCCCCCcCCCEeeeEEEEEEECCEEEE
Confidence 999998853 2 222221 248999999999987
|
| >1e9y_B Urease subunit beta; hydrolase, dodecamer; HET: KCX; 3.00A {Helicobacter pylori} SCOP: b.92.1.1 c.1.9.2 PDB: 1e9z_B* 3qga_C* 3qgk_C* | Back alignment and structure |
|---|
Probab=99.98 E-value=1e-31 Score=290.30 Aligned_cols=198 Identities=17% Similarity=0.128 Sum_probs=133.3
Q ss_pred CCHHHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhcCCCCCCceEeeccCCC----hhhHHHHhhCCcEEEe
Q 008063 363 MELESLLSMTMASDKSGLQVAIHAIGDRANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLA----SGTAARFGDQGIVASM 438 (579)
Q Consensus 363 ~~~~~l~~~~~~a~~~g~~i~iH~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~H~~~~~----~~~~~~~~~~~i~~~~ 438 (579)
.+++.+.++++.|+++|+++.+|+.+..+...+.+.++. . .+.+.++.|+.... ++.++++++.|+..+.
T Consensus 226 ~t~e~l~~~l~~A~~~g~~V~iHa~~~~e~g~~~~~la~---~---~g~~~hi~H~~~~~~~~~~d~I~~~~~~gv~~~~ 299 (569)
T 1e9y_B 226 TTPSAINHALDVADKYDVQVAIHTDTLNEAGCVEDTMAA---I---AGRTMHTFHTEGAGGGHAPDIIKVAGEHNILPAS 299 (569)
T ss_dssp CCHHHHHHHHHHHHHTTCEEEECCCTTCSSCCHHHHHHH---H---TTCCEEETTTTSTTSCSTTTGGGGGGSTTEEEEE
T ss_pred CCHHHHHHHHHHHHHhCCEEEEEcCCcccchHHHHHHHH---H---cCCCEEEEEcccCcccccHHHHHHHHHcCCeeEe
Confidence 578999999999999999999999753211111112211 1 23477888888765 7899999999986555
Q ss_pred cccccccchhHHH---------HhhCh------------hhhhhhhhhHHHHHHCCCeeeecCCCCCCCC------CHHH
Q 008063 439 QPQHLLDDADSAR---------KKLGV------------DRAERESYLFQSLLANNALLALGSDWPVADI------NPLC 491 (579)
Q Consensus 439 ~p~~~~~~~~~~~---------~~l~~------------~~~~~~~~~l~~l~~~Gi~v~~gsD~~~~~~------~~~~ 491 (579)
++.+...+.+... ..+.+ .+. ....+++.+.+.|+++++|||++..+. ++|.
T Consensus 300 ~~ptl~~t~~~~~~~~d~~~v~h~l~~~~~ed~~~~~~rlr~-~~~a~~~~L~d~Gv~v~iGSD~~~~~~~g~~~~~~~~ 378 (569)
T 1e9y_B 300 TNPTIPFTVNTEAEHMDMLMVCHHKDKSIKEDVQFADSRIRP-QTIAAEDTLHDMGAFSITSSDSQAMGRVGEVITRTWQ 378 (569)
T ss_dssp CGGGCSCBTTHHHHHHHHHHHTTTCCSSCHHHHHHHHHHCCH-HHHHHHHHHHHTTSCCEECCCTTSSCCTTSHHHHHHH
T ss_pred eCCccccccchhhhhhchhhhhhhcCcccHHHHHHhhcchhh-hHHHHHHHHHhCCCEEEEeCCCCccCcccccccchhh
Confidence 4333222111110 00110 111 234456778889999999999865432 2332
Q ss_pred ---HHHHHHcccCCCCCCCCCCCCCCCHHHHHHHHcHHHHHhcccCCccccccCCCcccEEEeCCCCCCChhhccCCeEE
Q 008063 492 ---AIRTAMKRIPPGWDNAWIPSERISLTDALIAHTLSAARACFLENDVGSLSPGKIADFVILSTSSWEDFAAEVSASIE 568 (579)
Q Consensus 492 ---~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~npA~~lgl~~~~G~I~~G~~ADlvvld~~~~~~~~~~~~~~v~ 568 (579)
.+....... . .....+.+++++++|+++|.|||+++|+++.+|+|++||.|||||||.+++ ..++.
T Consensus 379 ~~~~~~~~~G~l--~--~~~~~~~~ls~~~al~~~T~npA~~lGl~~~~GsIe~Gk~ADlvv~d~~~~-------~~~v~ 447 (569)
T 1e9y_B 379 TADKNKKEFGRL--K--EEKGDNDNFRIKRYLSKYTINPAIAHGISEYVGSVEVGKVADLVLWSPAFF-------GVKPN 447 (569)
T ss_dssp HHHHHHHHHCSC--S--SCCSSSCHHHHHHHHGGGTHHHHHHTTCTTTSSSSCTTSBCCEEEECTTTT-------TTCCS
T ss_pred HHHHhHhhccCc--c--hhhccccCCCHHHHHHHHhHHHHHHcCCCCCccCcCCCCCCCEEEECchhc-------CCCcc
Confidence 222111100 0 011235679999999999999999999998899999999999999999986 33789
Q ss_pred EEEECCEEeC
Q 008063 569 ATYVSGVQAY 578 (579)
Q Consensus 569 ~v~v~G~~v~ 578 (579)
.||++|++||
T Consensus 448 ~v~~~G~iv~ 457 (569)
T 1e9y_B 448 MIIKGGFIAL 457 (569)
T ss_dssp EEEETTEEEE
T ss_pred EEEECCEEEE
Confidence 9999999986
|
| >3hm7_A Allantoinase; metallo-dependent hydrolase, protein structure initiative, PSI-2, NEW YORK structural genomix research CON nysgxrc; 2.60A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.98 E-value=6.7e-31 Score=279.21 Aligned_cols=366 Identities=19% Similarity=0.214 Sum_probs=230.2
Q ss_pred CccEEEEcCeEEeCCCCCCeeeEEEEECCEEEEecC--hHHHHhhccCCCeEEeCCCCeeecccccccccccccCccccc
Q 008063 44 EADLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGN--YSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHFIPGGLQMAR 121 (579)
Q Consensus 44 ~~~~likn~~v~~~~~~~~~~~~v~I~~GkI~~Ig~--~~~~~~~~~~~~~viD~~g~~V~PG~ID~H~H~~~~~~~~~~ 121 (579)
+|+++|+|++|+++++. ..++|+|+||||++|++ ..+ +++.++||++|++|+|||||+|+|+..++..
T Consensus 5 ~~~~~i~~~~v~~~~~~--~~~~v~i~~g~I~~i~~~~~~~-----~~~~~~id~~g~~v~PG~ID~H~H~~~~~~~--- 74 (448)
T 3hm7_A 5 RFDLIIRSSTVVTETTT--YRADVAIRNGIVSAITEPGSIS-----SDDGPAIDGTGLHLFPGMVDVHVHFNEPGRT--- 74 (448)
T ss_dssp CCSEEEEEEEEECSSCE--EEEEEEEETTEEEEEESTTCSC-----TTSSCEEECTTCEEEECEEEEEECCCTTTSG---
T ss_pred cccEEEEeeEEECCCCc--eEeEEEEECCEEEEeeCccCCC-----CCCCeEEECCCCEEecCEEEeeeccCCCCCC---
Confidence 47899999999998765 77899999999999997 322 2467899999999999999999998543210
Q ss_pred cccCCCCCHHHHHHHHHHHHHcCCCCCeEEEeCCCCCCCCCCCCChHHhhhhCCCCeEEEEeCCCchhhhcHHHHHHcCC
Q 008063 122 VKLRGVSHKDEFVRRVKEAVKNSKKGSWILGGGWNNDLWGGDLPMASWIDDITPHNPVWLSRMDGHMGLANSVALQLVGI 201 (579)
Q Consensus 122 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~p~~~~ld~~~~~~p~~~~~~~~~~~~~n~~~~~~~g~ 201 (579)
.
T Consensus 75 --------------------------------------------~----------------------------------- 75 (448)
T 3hm7_A 75 --------------------------------------------E----------------------------------- 75 (448)
T ss_dssp --------------------------------------------G-----------------------------------
T ss_pred --------------------------------------------c-----------------------------------
Confidence 0
Q ss_pred CCCCCCCCCCeEEeCCCCCcCEEEhHhHHHHhcccCCCCCHHHHHHHHHHHHHHHHhcCccEEEeCC-cCCCCCccccch
Q 008063 202 TNLSEDPNGGTIMKTSSGEPTGLLIDAAMKLILPWIPEVSVDERREALLRASNLALSRGVTTVVDFG-RYYPGESVQLSW 280 (579)
Q Consensus 202 ~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Git~v~~~~-~~~~~~~~~~~~ 280 (579)
.+.+....+.+.+.|+|++.+++ ...+. ....
T Consensus 76 --------------------------------------------~~~~~~~~~~~~~~Gvtt~~~~~~~~~~~---~~~~ 108 (448)
T 3hm7_A 76 --------------------------------------------WEGFASGSKSLAAGGVTTYFDMPLNSNPP---TITR 108 (448)
T ss_dssp --------------------------------------------GCCSHHHHHHHHTTTEEEEEECSSSSSSC---SCSH
T ss_pred --------------------------------------------HhHHHHHHHHHHhCCEEEEEeCCCCCCCC---CChH
Confidence 00112355678999999999986 33222 2234
Q ss_pred HHHHHHHHHHhhcCCCeeEEEEccCccchhhHHHHHHhcCCCCCCceEEceEEEEEcCccCCCcccccCCCCCCCCCCcc
Q 008063 281 EDFADVYQWASYSEKMKIRVCLFFPLETWSSLADLINKTGHVLSDWVYLGGVKAFADGSLGSNSALFHEPYADEPHNYGL 360 (579)
Q Consensus 281 ~~~~~~~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~k~~~dg~~~~~~~~~~~~~~~~~~~~~~ 360 (579)
+.+....+.........+..+.........+..+.... ...+++.+.+... .+ ..
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~---------g~~~~~~~l~~~~-----------~~-----~~ 163 (448)
T 3hm7_A 109 EELDKKRQLANEKSLVDYRFWGGLVPGNIDHLQDLHDG---------GVIGFKAFMSECG-----------TD-----DF 163 (448)
T ss_dssp HHHHHHHTHHHHHCSSEEEEEEECCTTCGGGHHHHHHT---------TCSEEEEESSSCS-----------SS-----SS
T ss_pred HHHHHHHHHhccCCeeEEEEEEEecccCHHHHHHHHHc---------CCCEEEEeecccc-----------CC-----cc
Confidence 44444444444333344444433333333444444321 1223444332110 00 01
Q ss_pred cCCCHHHHHHHHHHHHHCCCeEEEEecchHHHHH------------------------HHHHHHHHHHhcCCCCCCceEe
Q 008063 361 QVMELESLLSMTMASDKSGLQVAIHAIGDRANDL------------------------VLDMYKSVVVTTGKRDQRFRIE 416 (579)
Q Consensus 361 ~~~~~~~l~~~~~~a~~~g~~i~iH~~g~~~~~~------------------------~~~~~~~~~~~~~~~~~~~~i~ 416 (579)
...+.+.+.+.++.+++.|+++.+|+.....+.. .....++........+.+..+.
T Consensus 164 ~~~~~~~l~~~l~~a~~~g~~v~vH~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~e~~av~~~~~la~~~g~~~~i~ 243 (448)
T 3hm7_A 164 QFSHDETLLKGMKKIAALGSILAVHAESNEMVNALTTIAIEEQRLTVKDYSEARPIVSELEAVERILRFAQLTCCPIHIC 243 (448)
T ss_dssp CCCCHHHHHHHHHHHHHHTCCEEEECCCHHHHHHHHHHHHHTTCCSHHHHHHHSCHHHHHHHHHHHHHHHHHHTCCEEEC
T ss_pred CcCCHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHhcCCcChhhccccCCHHHHHHHHHHHHHHHHHhCCCEEEE
Confidence 1247899999999999999999999975443221 0111111111111113467777
Q ss_pred eccCCCh-hhHHHHhhCC--cEEEecccccccchhHHHH------hhChhhhhhhhhhHHHHHHCCCeeeecCCCCCCCC
Q 008063 417 HAQHLAS-GTAARFGDQG--IVASMQPQHLLDDADSARK------KLGVDRAERESYLFQSLLANNALLALGSDWPVADI 487 (579)
Q Consensus 417 H~~~~~~-~~~~~~~~~~--i~~~~~p~~~~~~~~~~~~------~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD~~~~~~ 487 (579)
|...... +.++++++.| +.+.+||++.....+.+.. ..++.|......++...++.|+..+++||......
T Consensus 244 H~s~~~~~~~i~~ak~~G~~v~~e~~ph~l~l~~~~~~~~~~~~~~~Pplr~~~~~~~l~~~l~~g~~~~i~tD~~p~~~ 323 (448)
T 3hm7_A 244 HVSSRKVLKRIKQAKGEGVNVSVETCPHYLLFSLDEFAEIGYLAKCAPPLRERQEVEDLWDGLMAGEIDLISSDHSPSLP 323 (448)
T ss_dssp CCCCHHHHHHHHHHHHTTCCEEEEECHHHHHCCHHHHHHHCSTTCCSSCCCCHHHHHHHHHHHHHTCCCEECCCBCCCCG
T ss_pred eCCCHHHHHHHHHHHhcCCCEEEEechHHHccCHHHhcCCCCeEEEcCCCCCHHHHHHHHHHHhcCCccEEEeCCCCCCH
Confidence 7753222 3444455554 6788999888766655543 23334443556678888899999999999543321
Q ss_pred C-H----H-----------HHHHHHHcccCCCCCCCCCCCCCCCHHHHHHHHcHHHHHhcccCCccccccCCCcccEEEe
Q 008063 488 N-P----L-----------CAIRTAMKRIPPGWDNAWIPSERISLTDALIAHTLSAARACFLENDVGSLSPGKIADFVIL 551 (579)
Q Consensus 488 ~-~----~-----------~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~npA~~lgl~~~~G~I~~G~~ADlvvl 551 (579)
. . + ..+...+.. +....+++++++++++|.|||+++|+++.+|+|++|+.|||||+
T Consensus 324 ~~k~~~~~~~~~~G~~g~e~~l~~~~~~--------~~~~~~l~~~~~~~~~t~~~A~~~g~~~~~g~l~~G~~Ad~~~~ 395 (448)
T 3hm7_A 324 QMKTGKTIFEVWGGIAGCQNTLAVMLTE--------GYHKRKMPLTQIVQLLSTEPAKRFGLYPQKGTIQVGAEASFTLI 395 (448)
T ss_dssp GGGCCSSTTTSCCCBCCTTTHHHHHHHH--------TTTTTCCCHHHHHHHHTHHHHHHHTCTTTSSCCSTTSBCCEEEE
T ss_pred HHcccCCHhhCCCCCccHHHHHHHHHHH--------HHhcCCcCHHHHHHHHhHHHHHHcCCCCCCCcccCCCcCCEEEE
Confidence 0 0 0 011111110 11356799999999999999999999877999999999999999
Q ss_pred CCC-CCC-Chhhcc-------------CCeEEEEEECCEEeC
Q 008063 552 STS-SWE-DFAAEV-------------SASIEATYVSGVQAY 578 (579)
Q Consensus 552 d~~-~~~-~~~~~~-------------~~~v~~v~v~G~~v~ 578 (579)
|.+ ++. +.+++. ..+|..||++|++||
T Consensus 396 d~~~~~~~~~~~~~~~~~~sp~~g~~~~g~v~~t~~~G~~v~ 437 (448)
T 3hm7_A 396 DLNESYTLNASDLYYRHPISPYVGQRFRGKVKHTICQGKHVY 437 (448)
T ss_dssp EEEEEEECCGGGCCSSSCCCTTTTCEEEEEEEEEEETTEEEE
T ss_pred eCCCCEEEChHhcccccCCCCCCCCEEEEEEEEEEECCEEEE
Confidence 976 332 222221 358999999999997
|
| >1xrt_A Dihydroorotase, dhoase; amidohydrolase, metalloenzyme, pyrimidine; 1.61A {Aquifex aeolicus} SCOP: b.92.1.3 c.1.9.6 PDB: 1xrf_A 3d6n_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=1.3e-32 Score=293.95 Aligned_cols=368 Identities=18% Similarity=0.203 Sum_probs=207.1
Q ss_pred cCCCccEEEEcCeEEeCCCCCCeeeEEEEECCEEEEecChHHHHhhccCCCeEEeCCCCeeecccccccccccccCcccc
Q 008063 41 TNLEADLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHFIPGGLQMA 120 (579)
Q Consensus 41 ~~~~~~~likn~~v~~~~~~~~~~~~v~I~~GkI~~Ig~~~~~~~~~~~~~~viD~~g~~V~PG~ID~H~H~~~~~~~~~ 120 (579)
...+|+++|+|++|+++.+.....++|+|+||||++|++..+ +++.++||++|++|+|||||+|+|+...+.
T Consensus 43 ~~~mm~~~i~~~~v~~~~~~~~~~~~v~i~~g~I~~i~~~~~-----~~~~~~iD~~g~~v~PGlID~H~H~~~~~~--- 114 (467)
T 1xrt_A 43 DRWMLKLIVKNGYVIDPSQNLEGEFDILVENGKIKKIDKNIL-----VPEAEIIDAKGLIVCPGFIDIHVHLRDPGQ--- 114 (467)
T ss_dssp ---CCEEEEESCEEEEGGGTEEEECEEEEETTEEEEEESSCC-----CSSEEEEECTTSEEEECEEEEEECCCTTTC---
T ss_pred ccceeeEEEEeeEEECCCCCceecceEEEECCEEEEecCCCC-----CCCCcEEeCCCCEEccCEEEEeecccCCCC---
Confidence 345677999999999976543467899999999999987432 134689999999999999999999853211
Q ss_pred ccccCCCCCHHHHHHHHHHHHHcCCCCCeEEEeCCCCCCCCCCCCChHHhhhhCCCCeEEEEeCCCchhhhcHHHHHHcC
Q 008063 121 RVKLRGVSHKDEFVRRVKEAVKNSKKGSWILGGGWNNDLWGGDLPMASWIDDITPHNPVWLSRMDGHMGLANSVALQLVG 200 (579)
Q Consensus 121 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~p~~~~ld~~~~~~p~~~~~~~~~~~~~n~~~~~~~g 200 (579)
.| +
T Consensus 115 ---------------------------------~~---------~----------------------------------- 117 (467)
T 1xrt_A 115 ---------------------------------TY---------K----------------------------------- 117 (467)
T ss_dssp ---------------------------------TT---------T-----------------------------------
T ss_pred ---------------------------------Cc---------h-----------------------------------
Confidence 00 0
Q ss_pred CCCCCCCCCCCeEEeCCCCCcCEEEhHhHHHHhcccCCCCCHHHHHHHHHHHHHHHHhcCccEEEeCCcCCCCCccccch
Q 008063 201 ITNLSEDPNGGTIMKTSSGEPTGLLIDAAMKLILPWIPEVSVDERREALLRASNLALSRGVTTVVDFGRYYPGESVQLSW 280 (579)
Q Consensus 201 ~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Git~v~~~~~~~~~~~~~~~~ 280 (579)
+ .+....+.++++|+|++.+++...+. ....
T Consensus 118 ------------------------------------------~----~~~~~~~~~~~~GvTtv~~~~~~~~~---~~~~ 148 (467)
T 1xrt_A 118 ------------------------------------------E----DIESGSRCAVAGGFTTIVCMPNTNPP---IDNT 148 (467)
T ss_dssp ------------------------------------------C----CHHHHHHHHHHTTEEEEEECSCSSSC---SCSH
T ss_pred ------------------------------------------h----hHHHHHHHHHhCCeEEEEecCCCCCC---CChH
Confidence 0 11224556899999999998642211 1122
Q ss_pred HHHHHHHHHHhhcCCCeeEEEEccCccc------hhhHHHHHHhcCCCCCCceEEceEEEEEcCccCCCcccccCCCCCC
Q 008063 281 EDFADVYQWASYSEKMKIRVCLFFPLET------WSSLADLINKTGHVLSDWVYLGGVKAFADGSLGSNSALFHEPYADE 354 (579)
Q Consensus 281 ~~~~~~~~~~~~~~~~~i~v~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~g~k~~~dg~~~~~~~~~~~~~~~~ 354 (579)
+......+.....+. +++........ ..+..++... |.. .+. +
T Consensus 149 ~~~~~~~~~~~~~g~--~~~~~~g~~~~~~~~~~~~~~~~l~~~------------g~~------------~i~-~---- 197 (467)
T 1xrt_A 149 TVVNYILQKSKSVGL--CRVLPTGTITKGRKGKEIADFYSLKEA------------GCV------------AFT-D---- 197 (467)
T ss_dssp HHHHHHHHHHHHHCS--SEEEECBCSBGGGCSSSBCCHHHHHHH------------TCC------------CBC-C----
T ss_pred HHHHHHHHHhcccCc--ceEEEEeeecCCCCcccHHHHHHHHHc------------CCE------------EEE-c----
Confidence 233333333333322 34443322111 1111111110 000 000 0
Q ss_pred CCCCcccCCCHHHHHHHHHHHHHCCCeEEEEecchHHHHHHHH--------------HHH------HHHHhcCCCCCCce
Q 008063 355 PHNYGLQVMELESLLSMTMASDKSGLQVAIHAIGDRANDLVLD--------------MYK------SVVVTTGKRDQRFR 414 (579)
Q Consensus 355 ~~~~~~~~~~~~~l~~~~~~a~~~g~~i~iH~~g~~~~~~~~~--------------~~~------~~~~~~~~~~~~~~ 414 (579)
.+....+.+.++++++.|+++|+++.+|+.+...++..++ ... .........+.+.+
T Consensus 198 ---~~~~~~~~e~l~~~~~~A~~~g~~v~~H~~~~~~~~~~l~~g~~~~~~g~~~~~~~~e~~~~~~~~~~~~~~g~~~h 274 (467)
T 1xrt_A 198 ---DGSPVMDSSVMRKALELASQLGVPIMDHCEDDKLAYGVINEGEVSALLGLSSRAPEAEEIQIARDGILAQRTGGHVH 274 (467)
T ss_dssp ---TTSCCCCHHHHHHHHHHHHHHTCEEEECCCGGGGTC--------------------CHHHHHHHHHHHHHHHCCEEE
T ss_pred ---CCCCCCCHHHHHHHHHHHHhcCCEEEEECCCHHHHHHHHhcCccchhcccccCChHHHHHHHHHHHHHHHHhCCCEE
Confidence 0112368899999999999999999999986432211110 000 00000001123445
Q ss_pred EeeccCCC-hhhHHHHhhCC--cEEEecccccccchhHHH------HhhChhhhhhhhhhHHHHHHCCCeeeecCCCCCC
Q 008063 415 IEHAQHLA-SGTAARFGDQG--IVASMQPQHLLDDADSAR------KKLGVDRAERESYLFQSLLANNALLALGSDWPVA 485 (579)
Q Consensus 415 i~H~~~~~-~~~~~~~~~~~--i~~~~~p~~~~~~~~~~~------~~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD~~~~ 485 (579)
+.|+.... .+.++++++.| +.+.+||.+.....+.+. +..++.|......+++.+++.|+++++|||.+..
T Consensus 275 i~H~~~~~~~~~i~~~~~~G~~v~~~~~p~~~~~~~~~~~~~~~~~~~~pplr~~~~~~~l~~~l~~Gv~~~lgTD~~~~ 354 (467)
T 1xrt_A 275 IQHVSTKLSLEIIEFFKEKGVKITCEVNPNHLLFTEREVLNSGANARVNPPLRKKEDRLALIEGVKRGIIDCFATDHAPH 354 (467)
T ss_dssp ESCCCSHHHHHHHHHHHHTTCCEEEEECGGGGC----------------------CCHHHHHHHHHHTCSCEECCCBCCC
T ss_pred EEeCCCHHHHHHHHHHHhcCCcEEEeccHHHHhcCHhHhhccCceEEEcCCCCCHHHHHHHHHHHhCCceEEEeeCCCCC
Confidence 55654321 23445555788 778889987553332211 1122222223456788899999999999997543
Q ss_pred CC---CHHHHHHHHHcccCCCCC--CCCCCCCCCCHHHHHHHHcHHHHHhcccCCccccccCCCcccEEEeCCCCC-C-C
Q 008063 486 DI---NPLCAIRTAMKRIPPGWD--NAWIPSERISLTDALIAHTLSAARACFLENDVGSLSPGKIADFVILSTSSW-E-D 558 (579)
Q Consensus 486 ~~---~~~~~~~~~~~~~~~~~~--~~~~~~~~ls~~~al~~~T~npA~~lgl~~~~G~I~~G~~ADlvvld~~~~-~-~ 558 (579)
.. ++|..+..++........ ..+.....++++++|+++|.|||++||++ +|+|+|||.|||||+|.++. . +
T Consensus 355 ~~~~~~~~~~~~~g~~g~e~~l~~~l~~~~~g~ls~~~al~~aT~n~A~~lgl~--~G~I~~G~~ADlvvld~~~~~~i~ 432 (467)
T 1xrt_A 355 QTFEKELVEFAMPGIIGLQTALPSALELYRKGIISLKKLIEMFTINPARIIGVD--LGTLKLGSPADITIFDPNKEWILN 432 (467)
T ss_dssp CC-----------CCCCGGGHHHHHHHHHHTTSSCHHHHHHHHTHHHHHHHTCS--CSCCCTTSBCCEEEEEEEEEEECS
T ss_pred ChhHhcccccCCCCCccHHHHHHHHHHHHHcCCCCHHHHHHHhccCHHHHhCCC--cccccCCCCCCEEEEeCCCCEEEC
Confidence 32 222211110000000000 00001223999999999999999999997 79999999999999998762 1 2
Q ss_pred hhhc-------------cCCeEEEEEECCEEeC
Q 008063 559 FAAE-------------VSASIEATYVSGVQAY 578 (579)
Q Consensus 559 ~~~~-------------~~~~v~~v~v~G~~v~ 578 (579)
.+++ ...+|..||++|++||
T Consensus 433 ~~~~~~~~~~~p~~g~~~~~~V~~viv~G~~v~ 465 (467)
T 1xrt_A 433 EETNLSKSRNTPLWGKVLKGKVIYTIKDGKMVY 465 (467)
T ss_dssp TTTCCSSCCCCTTTTCEEEEEEEEEEETTEEEE
T ss_pred hHHccCcCCCCCccCCEEeEEEEEEEECCEEEe
Confidence 1111 1458999999999997
|
| >3mtw_A L-arginine carboxypeptidase CC2672; hydrolase; HET: KCX M3R; 1.70A {Caulobacter vibrioides} | Back alignment and structure |
|---|
Probab=99.98 E-value=2.9e-30 Score=266.17 Aligned_cols=189 Identities=17% Similarity=0.125 Sum_probs=129.1
Q ss_pred cCCCHHHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhcCCCCCCceEeeccCCChhhHHHHhhCCcEEEecc
Q 008063 361 QVMELESLLSMTMASDKSGLQVAIHAIGDRANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLASGTAARFGDQGIVASMQP 440 (579)
Q Consensus 361 ~~~~~~~l~~~~~~a~~~g~~i~iH~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~H~~~~~~~~~~~~~~~~i~~~~~p 440 (579)
.....+.+.++++.+++.+.++.+|..+.......++.. .....+.......................
T Consensus 202 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (403)
T 3mtw_A 202 QQLTYEEMKAVVDEAHMAGIKVAAHAHGASGIREAVRAG------------VDTIEHASLVDDEGIKLAVQKGAYFSMDI 269 (403)
T ss_dssp BCSCHHHHHHHHHHHHHTTCEEEEEECSHHHHHHHHHTT------------CSEEEECTTCCHHHHHHHHHHTCEEECCC
T ss_pred cccCHHHHHHHHHHHHHcCCeEEEEeccchhHHHHHHhc------------ccccccccccccchhhhhccccceeeeee
Confidence 345788999999999999999999998776555443321 22344444444444444433333333222
Q ss_pred cccccchhHH---------HHhhChhhhhhhhhhHHHHHHCCCeeeecCCCCCCC-CCHHHHHHHHHcccCCCCCCCCCC
Q 008063 441 QHLLDDADSA---------RKKLGVDRAERESYLFQSLLANNALLALGSDWPVAD-INPLCAIRTAMKRIPPGWDNAWIP 510 (579)
Q Consensus 441 ~~~~~~~~~~---------~~~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 510 (579)
.......... ......... ....+.+.+.+.|+.+.+|||.+... ...+..+..++.
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~gt~~~~~~~~~~~~~~~~~~~------------ 336 (403)
T 3mtw_A 270 YNTDYTQAEGKKNGVLEDNLRKDRDIGE-LQRENFRKALKAGVKMVYGTDAGIYPHGDNAKQFAVMVR------------ 336 (403)
T ss_dssp STHHHHHHHHHHHTCCHHHHHHHHHHHH-HHHHHHHHHHHHTCEEECCCCBTTBCTTCGGGHHHHHHH------------
T ss_pred ccchhhhhhhhccccchhhccccccccc-cccchhhHHHhcCCeEeeccCCcccccchHHHHHHHHHH------------
Confidence 2111000000 000011111 34456788889999999999987554 345555555443
Q ss_pred CCCCCHHHHHHHHcHHHHHhcccCCccccccCCCcccEEEeCCCCCCChhhccCCeEEEEEECCEEe
Q 008063 511 SERISLTDALIAHTLSAARACFLENDVGSLSPGKIADFVILSTSSWEDFAAEVSASIEATYVSGVQA 577 (579)
Q Consensus 511 ~~~ls~~~al~~~T~npA~~lgl~~~~G~I~~G~~ADlvvld~~~~~~~~~~~~~~v~~v~v~G~~v 577 (579)
.|+|++|||+++|.|||++||+++++|+|++||.|||||||.||++++..+. +|..||++||+|
T Consensus 337 -~gls~~eal~~~T~npA~~lgl~~~~GsI~~G~~ADlvvld~dPl~di~~~~--~v~~Vi~~G~vv 400 (403)
T 3mtw_A 337 -YGATPLQAIQSATLTAAEALGRSKDVGQVAVGRYGDMIAVAGDPLADVTTLE--KPVFVMKGGAVV 400 (403)
T ss_dssp -TTCCHHHHHHHTTHHHHHHHTCTTTSSSCCTTSBCCEEEESSCTTTCGGGGG--SCSEEEETTEEE
T ss_pred -cCCCHHHHHHHHHHHHHHHhCCCCCceeeCCCCcceEEEECCChhHhHhhhc--CcCEEEECCEEE
Confidence 3599999999999999999999998999999999999999999998877664 689999999987
|
| >3e74_A Allantoinase; (beta/alpha)8-barrel domain, small beta-sheet domain, hydrolase, metal-binding, purine metabolism, zinc; HET: KCX; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.98 E-value=2.1e-30 Score=276.25 Aligned_cols=363 Identities=20% Similarity=0.223 Sum_probs=224.6
Q ss_pred ccEEEEcCeEEeCCCCCCeeeEEEEECCEEEEecChHHHHhhccCCCeEEeCCCCeeecccccccccccccCcccccccc
Q 008063 45 ADLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHFIPGGLQMARVKL 124 (579)
Q Consensus 45 ~~~likn~~v~~~~~~~~~~~~v~I~~GkI~~Ig~~~~~~~~~~~~~~viD~~g~~V~PG~ID~H~H~~~~~~~~~~~~~ 124 (579)
++++|+|++|+++++ ...++|+|+||||++|++..+ ...++||++|++|+|||||+|+|+..++.
T Consensus 23 ~~~~i~~~~v~~~~~--~~~~~v~i~~g~I~~i~~~~~------~~~~~id~~g~~v~PG~iD~H~H~~~~g~------- 87 (473)
T 3e74_A 23 FDLIIKNGTVILENE--ARVVDIAVKGGKIAAIGQDLG------DAKEVMDASGLVVSPGMVDAHTHISEPGR------- 87 (473)
T ss_dssp EEEEEESCEEECSSC--EEECEEEEETTEEEEEESCCC------CEEEEEECTTCEEEECEEEEEECC------------
T ss_pred CCEEEEeeEEECCCC--ceeeeEEEECCEEEEEcCCCC------CCCcEEECCCCEEecCEEEEecccCCCCC-------
Confidence 468999999999876 367899999999999997532 22689999999999999999999854321
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCCCeEEEeCCCCCCCCCCCCChHHhhhhCCCCeEEEEeCCCchhhhcHHHHHHcCCCCC
Q 008063 125 RGVSHKDEFVRRVKEAVKNSKKGSWILGGGWNNDLWGGDLPMASWIDDITPHNPVWLSRMDGHMGLANSVALQLVGITNL 204 (579)
Q Consensus 125 ~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~p~~~~ld~~~~~~p~~~~~~~~~~~~~n~~~~~~~g~~~~ 204 (579)
T Consensus 88 -------------------------------------------------------------------------------- 87 (473)
T 3e74_A 88 -------------------------------------------------------------------------------- 87 (473)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCeEEeCCCCCcCEEEhHhHHHHhcccCCCCCHHHHHHHHHHHHHHHHhcCccEEEeCC-cCCCCCccccchHHH
Q 008063 205 SEDPNGGTIMKTSSGEPTGLLIDAAMKLILPWIPEVSVDERREALLRASNLALSRGVTTVVDFG-RYYPGESVQLSWEDF 283 (579)
Q Consensus 205 ~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Git~v~~~~-~~~~~~~~~~~~~~~ 283 (579)
...+.+....+.+++.|+|++.++. ...+.. ...+..
T Consensus 88 ---------------------------------------~~~~~~~~~~~~~~~~G~Tt~~~~~~~t~p~~---~~~~~~ 125 (473)
T 3e74_A 88 ---------------------------------------SHWEGYETGTRAAAKGGITTMIEMPLNQLPAT---VDRASI 125 (473)
T ss_dssp -------------------------------------------CHHHHHHHHHHTTEEEEEECCSSSSSCS---CSHHHH
T ss_pred ---------------------------------------CcHHHHHHHHHHHHhCCEEEEEcCcccCCCCc---ccHHHH
Confidence 0011234456678999999999986 332222 233333
Q ss_pred HHHHHHHhhcCCCeeEEEEcc--CccchhhHHHHHHhcCCCCCCceEEceEEEEEcCccCCCcccccCCCCCCCCCCccc
Q 008063 284 ADVYQWASYSEKMKIRVCLFF--PLETWSSLADLINKTGHVLSDWVYLGGVKAFADGSLGSNSALFHEPYADEPHNYGLQ 361 (579)
Q Consensus 284 ~~~~~~~~~~~~~~i~v~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~g~k~~~dg~~~~~~~~~~~~~~~~~~~~~~~ 361 (579)
....+...... .+++..+. ......+..+.... + ..++|++...... ...+.+..
T Consensus 126 ~~~~~~a~~~~--~~d~~~~~~~~~~~~~~l~~l~~~-G--------~~~~K~~~~~~~~------------~~~~~~~~ 182 (473)
T 3e74_A 126 ELKFDAAKGKL--TIDAAQLGGLVSYNIDRLHELDEV-G--------VVGFKCFVATCGD------------RGIDNDFR 182 (473)
T ss_dssp HHHHHHHTTTC--SSEEEECEECCTTCTTTHHHHHHH-T--------CSCEEEEC------------------------C
T ss_pred HHHHHHhccCC--eEEEEEEeecccchHHHHHHHHHc-C--------CCEEEEeccccCC------------cccccccC
Confidence 33333333322 34444432 22233333333322 1 1245555331100 00001223
Q ss_pred CCCHHHHHHHHHHHHHCCCeEEEEecchHHHHH---------------------------HHHHHHHHHHhcCCCCCCce
Q 008063 362 VMELESLLSMTMASDKSGLQVAIHAIGDRANDL---------------------------VLDMYKSVVVTTGKRDQRFR 414 (579)
Q Consensus 362 ~~~~~~l~~~~~~a~~~g~~i~iH~~g~~~~~~---------------------------~~~~~~~~~~~~~~~~~~~~ 414 (579)
..+++.+.++++.+++.|.++.+|+........ .++......... +.+.+
T Consensus 183 ~~~~~~l~~~~~~a~~~g~~v~~H~e~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~e~~av~~~l~la~~~---g~~lh 259 (473)
T 3e74_A 183 DVNDWQFFKGAQKLGELGQPVLVHCENALICDELGEEAKREGRVTAHDYVASRPVFTEVEAIRRVLYLAKVA---GCRLH 259 (473)
T ss_dssp CCCHHHHHHHHHHHHHHTCCEEEECSCHHHHHHHHHHHHHHTCCSHHHHHHTSCHHHHHHHHHHHHHHHHHH---TCCEE
T ss_pred CCCHHHHHHHHHHHHhcCCeEEEEecCHHHHHHHhhHHHhcCCcChhhcccCCCHHHHHHHHHHHHHHHHHh---CCcEE
Confidence 368899999999999999999999985422211 111111112222 35777
Q ss_pred EeeccCCCh-hhHHHHhhCC--cEEEecccccccchhHHHH------hhChhhhhhhhhhHHHHHHCCCeeeecCCCCCC
Q 008063 415 IEHAQHLAS-GTAARFGDQG--IVASMQPQHLLDDADSARK------KLGVDRAERESYLFQSLLANNALLALGSDWPVA 485 (579)
Q Consensus 415 i~H~~~~~~-~~~~~~~~~~--i~~~~~p~~~~~~~~~~~~------~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD~~~~ 485 (579)
+.|...... +.++++++.| +++.+||++.....+.+.. ..++.|.......+...++.|++++++||....
T Consensus 260 i~Hvst~~~l~li~~ak~~G~~vt~e~~ph~l~l~~~~~~~~~~~~~~~Pplr~~~~~~~L~~~l~~G~~~~i~tDh~p~ 339 (473)
T 3e74_A 260 VCHVSSPEGVEEVTRARQEGQDITCESCPHYFVLDTDQFEEIGTLAKCSPPIRDLENQKGMWEKLFNGEIDCLVSDHSPC 339 (473)
T ss_dssp ECSCCSHHHHHHHHHHHHTTCCEEEEECTHHHHCCHHHHHHHCGGGCCSSCCCCHHHHHHHHHHHHTTCCCEECCCBCCC
T ss_pred EEeCCCHHHHHHHHHHHHcCCCeEEEEchHhhhcCHHHHhCCCCcEEEeCCCCCHHHHHHHHHHHhCCCCcEEEeCCCCC
Confidence 778664222 3444455544 6778899988766665543 234444435566788889999999999997544
Q ss_pred CCC---------------HHHHHHHHHcccCCCCCCCCCCCCCCCHHHHHHHHcHHHHHhcccCCccccccCCCcccEEE
Q 008063 486 DIN---------------PLCAIRTAMKRIPPGWDNAWIPSERISLTDALIAHTLSAARACFLENDVGSLSPGKIADFVI 550 (579)
Q Consensus 486 ~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~npA~~lgl~~~~G~I~~G~~ADlvv 550 (579)
... .-..+...+... ....+++++++++++|.|||+++|+++ +|+|++|+.|||||
T Consensus 340 ~~~~k~~~f~~~~~G~~g~e~~l~~~~~~~--------~~~~~~~~~~~~~~~t~~~a~~~g~~~-~G~l~~G~~AD~vv 410 (473)
T 3e74_A 340 PPEMKAGNIMKAWGGIAGLQSCMDVMFDEA--------VQKRGMSLPMFGKLMATNAADIFGLQQ-KGRIAPGKDADFVF 410 (473)
T ss_dssp CTTTTCSCTTTSCCCBCCGGGHHHHHHHHH--------TTTTCCCHHHHHHHHTHHHHHHTTCTT-SSCCSTTSBCCEEE
T ss_pred CHHHcccChhhcCCCcccHHhHHHHHHHHH--------HHcCCCCHHHHHHHHhHHHHHHhCCCC-CCccCCCCccCEEE
Confidence 321 111121111111 134569999999999999999999985 79999999999999
Q ss_pred eCCC-CCC-Chhhcc-------------CCeEEEEEECCEEeCC
Q 008063 551 LSTS-SWE-DFAAEV-------------SASIEATYVSGVQAYP 579 (579)
Q Consensus 551 ld~~-~~~-~~~~~~-------------~~~v~~v~v~G~~v~~ 579 (579)
+|.+ ++. +.+++. ..+|..||++|++||.
T Consensus 411 ~d~~~~~~~~~~~~~~~~~~sp~~g~~~~g~v~~t~v~G~~v~~ 454 (473)
T 3e74_A 411 IQPNSSYVLTNDDLEYRHKVSPYVGRTIGARITKTILRGDVIYD 454 (473)
T ss_dssp EESSCCEECCGGGCCSSSCCCTTTTCEESCEEEEEEETTEEEEE
T ss_pred EeCCCCEEECHHHccccCCCCCCCCCEEeeEEEEEEECCEEEEe
Confidence 9966 332 222221 4579999999999973
|
| >2imr_A Hypothetical protein DR_0824; zinc, NYSGXRC, PSI2, structural genomics, protein structure initiative; 1.78A {Deinococcus radiodurans} SCOP: b.92.1.11 c.1.9.16 | Back alignment and structure |
|---|
Probab=99.98 E-value=1.3e-31 Score=282.37 Aligned_cols=168 Identities=14% Similarity=0.065 Sum_probs=131.5
Q ss_pred CCHHHHHHHHHHHHHCCCeEEEEecchH-HHHHHHHHH------------------------------HHHHHhcCCCCC
Q 008063 363 MELESLLSMTMASDKSGLQVAIHAIGDR-ANDLVLDMY------------------------------KSVVVTTGKRDQ 411 (579)
Q Consensus 363 ~~~~~l~~~~~~a~~~g~~i~iH~~g~~-~~~~~~~~~------------------------------~~~~~~~~~~~~ 411 (579)
++++.++++++.|++.|+++.+|+.++. ++...++.+ .+.....+..+.
T Consensus 218 ~~~~~l~~~~~~a~~~g~~v~~H~~e~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~ 297 (420)
T 2imr_A 218 VSHRLMRLLSDYAAGEGLPLQIHVAEHPTELEMFRTGGGPLWDNRMPALYPHTLAEVIGREPGPDLTPVRYLDELGVLAA 297 (420)
T ss_dssp BCHHHHHHHHHHHHHHTCCBEEEESCSHHHHHHHHHSCSTTGGGSCGGGSCSSHHHHHTSCCCTTCCHHHHHHHHTCGGG
T ss_pred cCHHHHHHHHHHHHHCCCcEEEEeCCCHHHHHHHHHhhccccccccccchhhhhhhhccccccCCCCHHHHHHHcCCCCC
Confidence 5789999999999999999999997553 444443321 112233455556
Q ss_pred CceEeeccCCChhhHHHHhhCCcEEEecccccccchhHHHHhhChhhhhhhhhhHHHHHHCCCeeeecCCCCC--CCCCH
Q 008063 412 RFRIEHAQHLASGTAARFGDQGIVASMQPQHLLDDADSARKKLGVDRAERESYLFQSLLANNALLALGSDWPV--ADINP 489 (579)
Q Consensus 412 ~~~i~H~~~~~~~~~~~~~~~~i~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD~~~--~~~~~ 489 (579)
+..+.|+.++++++++++++.|+.+++||.++. .++ ...++++.++++|+++++|||++. ...++
T Consensus 298 ~~~i~H~~~l~~~~i~~l~~~g~~~~~~p~~~~--------~~~-----~~~~~l~~~~~~Gv~~~lgtD~~~~~~~~~~ 364 (420)
T 2imr_A 298 RPTLVHMVNVTPDDIARVARAGCAVVTCPRSNH--------HLE-----CGTFDWPAFAAAGVEVALGTDSVASGETLNV 364 (420)
T ss_dssp CCEEEECCSCCHHHHHHHHHHTCCEEECHHHHH--------HTT-----CCCCCHHHHHHTTCCEEECCCCHHHHSCSCT
T ss_pred CeEEEecCcCCHHHHHHHHHcCCeEEECHHHHH--------Hhc-----cCCCCHHHHHHCCCeEEEECCCCccCCCCCH
Confidence 789999999999999999999999999998653 222 345688999999999999999853 24678
Q ss_pred HHHHHHHHcccCCCCCCCCCCCCCCCHHHHHHHHcHHHHHhcccCCccccccCCCcccEEEeCCCC
Q 008063 490 LCAIRTAMKRIPPGWDNAWIPSERISLTDALIAHTLSAARACFLENDVGSLSPGKIADFVILSTSS 555 (579)
Q Consensus 490 ~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~npA~~lgl~~~~G~I~~G~~ADlvvld~~~ 555 (579)
+.+++.++.+ ..+++++++|+++|.|||++||+++++|+|++||.||| |+|.++
T Consensus 365 ~~~~~~~~~~-----------~~~ls~~~al~~aT~n~A~~lgl~~~~GsL~~Gk~ADl-vvd~~~ 418 (420)
T 2imr_A 365 REEVTFARQL-----------YPGLDPRVLVRAAVKGGQRVVGGRTPFLRRGETWQEGF-RWELSR 418 (420)
T ss_dssp HHHHHHHHHH-----------CTTSCHHHHHHHHHHHHHHHHC--CCCCSTTSBCCGGG-BGGGCC
T ss_pred HHHHHHHHhc-----------CCCCCHHHHHHHHHHHHHHHhCCCCCceeeCCCCccCE-EEECCC
Confidence 8888887642 13699999999999999999999988999999999999 777664
|
| >2z00_A Dihydroorotase; zinc binding protein, hydrolase, metal-binding, pyrimidine biosynthesis, structural genomics, NPPSFA; 2.42A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.98 E-value=3.4e-31 Score=279.59 Aligned_cols=205 Identities=19% Similarity=0.131 Sum_probs=135.5
Q ss_pred CCHHHHHHHHHHHHHCCCeEEEEecchHHHH----------------------H---HHHHHHHHHH---hcCCCCCCce
Q 008063 363 MELESLLSMTMASDKSGLQVAIHAIGDRAND----------------------L---VLDMYKSVVV---TTGKRDQRFR 414 (579)
Q Consensus 363 ~~~~~l~~~~~~a~~~g~~i~iH~~g~~~~~----------------------~---~~~~~~~~~~---~~~~~~~~~~ 414 (579)
.+.+.+.++++.|+++|+++.+|+.++.... + +.+.++.+.. ..+ .+.+..
T Consensus 152 ~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~e~~~~~~~~~~a~~~~~~~~-~g~~~~ 230 (426)
T 2z00_A 152 EDAGVLAAGLLMAAPLGLPVAVHAEDAGLRRNGVMNDGPLADLLGLPGNPPEAEAARIARDLEVLRYALRRSP-ATPRLH 230 (426)
T ss_dssp CCHHHHHHHHHHHGGGTCCEEECCCCHHHHTTCSEECSHHHHHHTCCEECHHHHHHHHHHHHHHHHHHHHHCS-SCCCEE
T ss_pred CCHHHHHHHHHHHHhhCCEEEEeCCCHHHHhhhhhccCccchhcccccCChHHHHHHHHHHHHHHhhcccccc-CCCcEE
Confidence 6889999999999999999999998765432 1 1111111111 112 356788
Q ss_pred EeeccCCC-hhhHHHHhhCCc--EEEecccccccchhHHHH------hhChhhhhhhhhhHHHHHHCCCeeeecCCC-CC
Q 008063 415 IEHAQHLA-SGTAARFGDQGI--VASMQPQHLLDDADSARK------KLGVDRAERESYLFQSLLANNALLALGSDW-PV 484 (579)
Q Consensus 415 i~H~~~~~-~~~~~~~~~~~i--~~~~~p~~~~~~~~~~~~------~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD~-~~ 484 (579)
+.|+.... .+.++++++.|+ .+++||.++..+.+.... ..++.+.......+...++.|+++++|||+ +.
T Consensus 231 i~H~~~~~~~~~i~~~~~~G~~v~~~~~p~~~~~~~~~~~~~~~~~~~~~plr~~~~~~~l~~~l~~G~~~~lgsD~~p~ 310 (426)
T 2z00_A 231 VQHLSTKRGLELVREAKRAGLPVTAEATPHHLTLTEEALRTFDPLFKVAPPLRGEEDREALLEGLLDGTLDAIATDHAPH 310 (426)
T ss_dssp ETTCCCHHHHHHHHHHHHTTCCEEEEECHHHHHCCGGGGGGCCGGGCCSSCCCCHHHHHHHHHHHHHTSSCEECCCBCCC
T ss_pred EEeCCCHHHHHHHHHHHHcCCCEEEEEchHHhEeCHhHhhccCceEEEeCCCCCHHHHHHHHHHHhCCCcEEEecCCCCC
Confidence 99998643 366677777764 566799887654433211 122222112233556677799999999996 44
Q ss_pred CCC---CHHH-----------HHHHHHcccCCCCCCCCCCCCCCCHHHHHHHHcHHHHHhcccCCccccccCCCcccEEE
Q 008063 485 ADI---NPLC-----------AIRTAMKRIPPGWDNAWIPSERISLTDALIAHTLSAARACFLENDVGSLSPGKIADFVI 550 (579)
Q Consensus 485 ~~~---~~~~-----------~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~npA~~lgl~~~~G~I~~G~~ADlvv 550 (579)
... +++. .+...+.. +....++|++++++++|.|||+++|++ +|+|+|||.|||||
T Consensus 311 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~--------~~~~~~ls~~~~l~~~T~n~A~~lgl~--~G~l~~G~~ADlvv 380 (426)
T 2z00_A 311 TLAEKEKDLLRAPFGIPSLEVAFPLLYTE--------LHLKRGFPLQRLVELFTDGPRRVLGLP--PLHLEEGAEASLVL 380 (426)
T ss_dssp CTTGGGSCTTTSCCCBCCTTTHHHHHHHH--------THHHHCCCHHHHHHHHTHHHHHHHTCC--CCCSSTTSBCCEEE
T ss_pred CHHHccCChhhCCCCcccHHHHHHHHHHH--------HHHcCCCCHHHHHHHHhhhHHHHhCCC--cccccCCCCCCEEE
Confidence 321 1110 00000000 002235999999999999999999996 89999999999999
Q ss_pred eCCCCCC-Chhhcc-------------CCeEEEEEECCEEeC
Q 008063 551 LSTSSWE-DFAAEV-------------SASIEATYVSGVQAY 578 (579)
Q Consensus 551 ld~~~~~-~~~~~~-------------~~~v~~v~v~G~~v~ 578 (579)
+|.+++. +.+.+. ..+|..||++|++||
T Consensus 381 ~d~~~~~~~~~~~~~~~~~~p~~g~~~~~~v~~t~v~G~~v~ 422 (426)
T 2z00_A 381 LSPKERPVDPSAFASKARYSPWAGWVLGGWPVLTLVAGRIVH 422 (426)
T ss_dssp EECCCEECCGGGCSSSCCCCTTTTCEECCEEEEEEETTEEEE
T ss_pred EeCCcEEEcHHHccccCCCCCcCCCEEEEEEEEEEECCEEEE
Confidence 9998765 444432 369999999999997
|
| >2vun_A Enamidase; nicotinate degradation, binuclear metal center, amidohydrolases, stereospecificity, hydrolase; 1.89A {Eubacterium barkeri} | Back alignment and structure |
|---|
Probab=99.97 E-value=4.5e-30 Score=267.38 Aligned_cols=176 Identities=20% Similarity=0.185 Sum_probs=127.8
Q ss_pred CCHHHHHHHHHHHHHCCCeEEEEec-------chHHHHHHHHHHHHHHHhcCCCCCCceEeeccC----CChhhHHHHhh
Q 008063 363 MELESLLSMTMASDKSGLQVAIHAI-------GDRANDLVLDMYKSVVVTTGKRDQRFRIEHAQH----LASGTAARFGD 431 (579)
Q Consensus 363 ~~~~~l~~~~~~a~~~g~~i~iH~~-------g~~~~~~~~~~~~~~~~~~~~~~~~~~i~H~~~----~~~~~~~~~~~ 431 (579)
++++.+.++++.|+++|+++.+|+. +...+...++ .| ...+.|+.. .+++.++++++
T Consensus 171 ~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~i~~~~~--------~G----~~~i~H~~~~~~~~~~~~~~~~~~ 238 (386)
T 2vun_A 171 KNPEDAAPMVEWAHKHGFKVQMHTGGTSIPGSSTVTADDVIK--------TK----PDVVSHINGGPTAISVQEVDRIMD 238 (386)
T ss_dssp CSHHHHHHHHHHHHHTTCEEEEECSCCSCSTTCSCCHHHHHH--------HC----CSEEETTTCSSSCCCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCeEEEecCCccccccCHHHHHHHHH--------cC----CCEEEEccCCCCCCCHHHHHHHHH
Confidence 4688999999999999999999994 2233332221 23 236899988 88999999999
Q ss_pred CCcEEEecccccccchhHHHHhhChhhhhhhhhhHHHHHHCCC--eeeecCCCCCC-CC----CHHHHHHHHHcccCCCC
Q 008063 432 QGIVASMQPQHLLDDADSARKKLGVDRAERESYLFQSLLANNA--LLALGSDWPVA-DI----NPLCAIRTAMKRIPPGW 504 (579)
Q Consensus 432 ~~i~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~~Gi--~v~~gsD~~~~-~~----~~~~~~~~~~~~~~~~~ 504 (579)
.|+.+..++. .. . .. ....+++.+++.|+ +++++||++.. +. ++..+++.+.
T Consensus 239 ~g~~vl~~~~-~g-~-----------~~-~~~~~~~~~~~~g~~d~v~lgTD~p~~~~~~~~g~~~~~~~~~~------- 297 (386)
T 2vun_A 239 ETDFAMEIVQ-CG-N-----------PK-IADYVARRAAEKGQLGRVIFGNDAPSGTGLIPLGILRNMCQIAS------- 297 (386)
T ss_dssp HCCCEEEEES-SS-C-----------HH-HHHHHHHHHHHHTCGGGEEEECCBSBTTBBCTTHHHHHHHHHHH-------
T ss_pred cCCeEEEecc-CC-c-----------cc-ccHHHHHHHHHcCCCceeEEecCCCCCCCCCcchhHHHHHHHHh-------
Confidence 9987733222 10 0 11 44557899999999 99999998522 11 2333443322
Q ss_pred CCCCCCCCCCCHHHHHHHHcHHHHHhcccCCccccccCCCcccEEEeCCCCCC----Chhhcc---CCeEEEEEECCEEe
Q 008063 505 DNAWIPSERISLTDALIAHTLSAARACFLENDVGSLSPGKIADFVILSTSSWE----DFAAEV---SASIEATYVSGVQA 577 (579)
Q Consensus 505 ~~~~~~~~~ls~~~al~~~T~npA~~lgl~~~~G~I~~G~~ADlvvld~~~~~----~~~~~~---~~~v~~v~v~G~~v 577 (579)
+.+++++++++++|.|||+++|+ + +|+|++||.|||||+|.++.. .+.++. ..+|..||++|++|
T Consensus 298 ------~~~ls~~~~~~~~T~n~A~~lgl-~-~G~i~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v 369 (386)
T 2vun_A 298 ------MSDIDPEVAVCMATGNSTAVYGL-N-TGVIAPGKEADLIIMDTPLGSVAEDAMGAIAAGDIPGISVVLIDGEAV 369 (386)
T ss_dssp ------HSCCCHHHHHHHHTHHHHHHHTC-S-CSSCSTTSBCCEEEEECBTTCSCSSHHHHHHHTCCCEEEEEEETTEEE
T ss_pred ------hcCCCHHHHHHHHhHHHHHHcCC-C-ceeeCCCCeeCEEEECCCcccccchhHHHhhccCCCceeEEEECCEEE
Confidence 24699999999999999999999 4 899999999999999998832 122221 24899999999998
Q ss_pred CC
Q 008063 578 YP 579 (579)
Q Consensus 578 ~~ 579 (579)
+.
T Consensus 370 ~~ 371 (386)
T 2vun_A 370 VT 371 (386)
T ss_dssp ES
T ss_pred ee
Confidence 63
|
| >3dc8_A Dihydropyrimidinase; TIM-barrel, hydrolase; HET: KCX; 1.85A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.7e-30 Score=275.10 Aligned_cols=357 Identities=18% Similarity=0.197 Sum_probs=221.7
Q ss_pred ccEEEEcCeEEeCCCCCCeeeEEEEECCEEEEecChHHHHhhccCCCeEEeCCCCeeecccccccccccccCcccccccc
Q 008063 45 ADLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHFIPGGLQMARVKL 124 (579)
Q Consensus 45 ~~~likn~~v~~~~~~~~~~~~v~I~~GkI~~Ig~~~~~~~~~~~~~~viD~~g~~V~PG~ID~H~H~~~~~~~~~~~~~ 124 (579)
|+++|+|++|+++++. ..++|+|+||||++|++.. .+.++||++|++|+|||||+|+|+..++..
T Consensus 1 m~~~i~~~~v~~~~~~--~~~~v~I~~G~I~~i~~~~-------~~~~viD~~g~~v~PG~ID~H~H~~~~~~~------ 65 (490)
T 3dc8_A 1 MSTVIKGGTIVTADLT--YKADVKVEGGRIVEIGPNL-------SGAETLDATGCYVMPGGIDPHTHLEMPFMG------ 65 (490)
T ss_dssp -CEEEESCEEECSSCE--EECEEEEETTEEEEEESSC-------CCSEEEECTTCEEEECEEEEEECTTCEETT------
T ss_pred CcEEEEccEEECCCCc--eeeeEEEECCEEEEeccCC-------CCCeEEECCCCEEecCEEeeccccCCCCCC------
Confidence 5789999999998765 6779999999999999752 257899999999999999999998543210
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCCCeEEEeCCCCCCCCCCCCChHHhhhhCCCCeEEEEeCCCchhhhcHHHHHHcCCCCC
Q 008063 125 RGVSHKDEFVRRVKEAVKNSKKGSWILGGGWNNDLWGGDLPMASWIDDITPHNPVWLSRMDGHMGLANSVALQLVGITNL 204 (579)
Q Consensus 125 ~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~p~~~~ld~~~~~~p~~~~~~~~~~~~~n~~~~~~~g~~~~ 204 (579)
...
T Consensus 66 ---------------------------------------~~~-------------------------------------- 68 (490)
T 3dc8_A 66 ---------------------------------------TYS-------------------------------------- 68 (490)
T ss_dssp ---------------------------------------EEC--------------------------------------
T ss_pred ---------------------------------------CCC--------------------------------------
Confidence 000
Q ss_pred CCCCCCCeEEeCCCCCcCEEEhHhHHHHhcccCCCCCHHHHHHHHHHHHHHHHhcCccEEEeCCcCCCCCccccchHHHH
Q 008063 205 SEDPNGGTIMKTSSGEPTGLLIDAAMKLILPWIPEVSVDERREALLRASNLALSRGVTTVVDFGRYYPGESVQLSWEDFA 284 (579)
Q Consensus 205 ~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Git~v~~~~~~~~~~~~~~~~~~~~ 284 (579)
.+.+....+.+++.|+|++.++.... +........
T Consensus 69 -----------------------------------------~e~~~~~~~aa~~~GvTtv~~~~~~~----p~~~~~~~~ 103 (490)
T 3dc8_A 69 -----------------------------------------SDDFESGTRAALAGGTTMVVDFALPS----PGQSLLEAL 103 (490)
T ss_dssp -----------------------------------------SCCHHHHHHHHHHTTEEEEEEEECCC-----CCCHHHHH
T ss_pred -----------------------------------------HHHHHHHHHHHHHcCEEeecccCCCC----CCcCHHHHH
Confidence 00123355667899999999986432 222333333
Q ss_pred HHHHHHhhcCCCeeEEEEccCccc-----hhhHHHHHHhcCCCCCCceEEceEEEEEcCccCCCcccccCCCCCCCCCCc
Q 008063 285 DVYQWASYSEKMKIRVCLFFPLET-----WSSLADLINKTGHVLSDWVYLGGVKAFADGSLGSNSALFHEPYADEPHNYG 359 (579)
Q Consensus 285 ~~~~~~~~~~~~~i~v~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~g~k~~~dg~~~~~~~~~~~~~~~~~~~~~ 359 (579)
+.+..... ...+++..+..... ..+..+..... ...++|++.+. . +
T Consensus 104 ~~~~~~a~--~~~~d~~~~~~~~~~~~~~l~el~~l~~~~--------G~~~~k~~~~~-------------~------~ 154 (490)
T 3dc8_A 104 TMWDNKST--RANCDYSFHMAITWWGEQVFNEMETIVKDK--------GINTFKHFMAY-------------K------G 154 (490)
T ss_dssp HHHHHHTT--TCSSEEEEEEECCSCSHHHHHHHHHHHHHS--------CCCEEEEESCS-------------T------T
T ss_pred HHHHHHhh--cccceeeeEEEEecCcHHHHHHHHHHHHhC--------CCCEEEEEecC-------------C------C
Confidence 43333332 33444444332222 11222222110 11234544211 0 1
Q ss_pred ccCCCHHHHHHHHHHHHHCCCeEEEEecchHHHHHHHH------------------------HHHHHHHhcCCCCCCceE
Q 008063 360 LQVMELESLLSMTMASDKSGLQVAIHAIGDRANDLVLD------------------------MYKSVVVTTGKRDQRFRI 415 (579)
Q Consensus 360 ~~~~~~~~l~~~~~~a~~~g~~i~iH~~g~~~~~~~~~------------------------~~~~~~~~~~~~~~~~~i 415 (579)
...++++.+.++++.+++.|.++.+|+.....+....+ ............+.+.++
T Consensus 155 ~~~~~~~~l~~~~~~a~~~g~~v~~HaE~~~~i~~~~~~~~~~g~~~~~~~~~~rP~~~E~~av~r~i~la~~~g~~lhi 234 (490)
T 3dc8_A 155 ALMVDDDEMFSSFQRCAALGALPLVHAENGDVVAQLQAKLLAEGNSGPEAHAYSRPAEVEGEAANRAIMIADMAGCPVYI 234 (490)
T ss_dssp TTBCCHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHHHHHHHTTCCSHHHHHHTSCHHHHHHHHHHHHHHHHHHTCCEEE
T ss_pred CccCCHHHHHHHHHHHHhcCCEEEEecCChHHHHHHHHHHHhcCCCCccccccCCCHHHHHHHHHHHHHHHHHhCCcEEE
Confidence 22358899999999999999999999875433221111 111111100112357778
Q ss_pred eeccCCCh-hhHHHHhhC--CcEEEecccccccchhHH----------HHhhChhhhhhhhhhHHHHHHCCCeeeecCCC
Q 008063 416 EHAQHLAS-GTAARFGDQ--GIVASMQPQHLLDDADSA----------RKKLGVDRAERESYLFQSLLANNALLALGSDW 482 (579)
Q Consensus 416 ~H~~~~~~-~~~~~~~~~--~i~~~~~p~~~~~~~~~~----------~~~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD~ 482 (579)
.|...... +.++..++. .+++.+||++.....+.+ ....++.|.......+...++.|.+.+++||.
T Consensus 235 ~HvSt~~~~~li~~ak~~G~~Vt~e~~ph~l~l~~~~~~~~~~~~~~~~~~~Pplr~~~d~~aL~~~l~~G~id~i~sDh 314 (490)
T 3dc8_A 235 VHTSCEQAHEAIRRARAKGMRVFGEPLIQHLTLDETEYFDKDWDHAARRVMSPPFRNKLHQDSLWAGLASGSLQVVATDH 314 (490)
T ss_dssp SSCCSHHHHHHHHHHHHTTCCEEECCBHHHHHCCGGGGGCSCHHHHHHTCCSSCCCCGGGHHHHHHHHHHTSSCCCBCCB
T ss_pred EeCCCHHHHHHHHHHHHCCCeEEEEEchHHheeCHHHhcCcCcccCCceEECCCCCChHHHHHHHHHHhcCCceEEECCC
Confidence 88654221 333444444 467788898765444332 12344555546666788888999999999997
Q ss_pred CCCCCCH---------------------HHHHHHHHcccCCCCCCCCCCCCCCCHHHHHHHHcHHHHHhcccCCcccccc
Q 008063 483 PVADINP---------------------LCAIRTAMKRIPPGWDNAWIPSERISLTDALIAHTLSAARACFLENDVGSLS 541 (579)
Q Consensus 483 ~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~npA~~lgl~~~~G~I~ 541 (579)
+....+. +..+... +....+++++++++++|.|||+++|+++.+|+|+
T Consensus 315 ~p~~~~~K~~g~~~f~~~~~G~~gle~~l~~~~~~-----------~v~~~~l~~~~~~~~~t~~~A~~~gl~~~~G~l~ 383 (490)
T 3dc8_A 315 CAFTTEQKRFGVGDFTRIPNGTGGLEDRMPMLWTY-----------GVATGRITMNEFVAVTSTNIAKILNIYPKKGAIL 383 (490)
T ss_dssp CCCCHHHHGGGTTCGGGSCCCBCCTTTHHHHHHHH-----------HTTTTSSCHHHHHHHHTHHHHHHTTCTTTSSCCS
T ss_pred CCCCHHHhhccCCChhhCCCChHHHHHHHHHHHHH-----------HHHcCCCCHHHHHHHHHHHHHHHhCCCCCCCccC
Confidence 5432110 1111111 0135669999999999999999999977799999
Q ss_pred CCCcccEEEeCCC-CCC-Chhhc-------------cCCeEEEEEECCEEeC
Q 008063 542 PGKIADFVILSTS-SWE-DFAAE-------------VSASIEATYVSGVQAY 578 (579)
Q Consensus 542 ~G~~ADlvvld~~-~~~-~~~~~-------------~~~~v~~v~v~G~~v~ 578 (579)
+|+.|||||||.+ ++. +.+++ ...+|..||++|++||
T Consensus 384 ~G~~ADlvv~d~~~~~~i~~~~~~s~~~~sp~~g~~~~g~v~~t~~~G~~v~ 435 (490)
T 3dc8_A 384 VGADADLVVWDPKRSKTISAKTQQSAIDYNVFEGKTVTGLPRFTLTRGVVSI 435 (490)
T ss_dssp TTSBCCEEEEEEEEEEECCTTTCSSSSSCCTTTTCEEEEEEEEEEETTEEEE
T ss_pred CCCcCCEEEEecCcceEechhhccccCCCCcccCcEEeeEEEEEEECCEEEE
Confidence 9999999999977 222 11111 1458999999999997
|
| >2fty_A Dihydropyrimidinase; alpha/beta barrel, beta-sandwich, hydrolase; HET: KCX; 2.40A {Lachancea kluyveri} SCOP: b.92.1.3 c.1.9.6 PDB: 2fvk_A* 2fvm_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.6e-30 Score=280.51 Aligned_cols=208 Identities=16% Similarity=0.113 Sum_probs=131.4
Q ss_pred CCHHHHHHHHHHHHHCCCeEEEEecchHHHHHHHH------------------------HHHHHHHhcCCCCCCceEeec
Q 008063 363 MELESLLSMTMASDKSGLQVAIHAIGDRANDLVLD------------------------MYKSVVVTTGKRDQRFRIEHA 418 (579)
Q Consensus 363 ~~~~~l~~~~~~a~~~g~~i~iH~~g~~~~~~~~~------------------------~~~~~~~~~~~~~~~~~i~H~ 418 (579)
++.+.+.++++.|+++|+++.+|+.....+....+ ...+........+.+.++.|+
T Consensus 176 ~s~e~l~~~~~~A~~~g~~v~~H~e~~~~i~~~~~~~~~~G~~~~~~~~~~~p~~~E~~av~~~i~la~~~g~~vhi~H~ 255 (559)
T 2fty_A 176 ISDYDIMSAMYATRKNGFTTMLHAENGDMVKWMIEALEEQGLTDAYYHGVSRPSIVEGEATNRAITLATTMDTPILFVHV 255 (559)
T ss_dssp CCHHHHHHHHHHHHHHTCEEEEECCCHHHHHHHHHHHHHTTCCSTTHHHHTSCHHHHHHHHHHHHHHHHHTTCCEEECSC
T ss_pred CCHHHHHHHHHHHHhCCCEEEEECCChHHHHHHHHHHHhcCCCChhhcccCCCHHHHHHHHHHHHHHHHHhCCCEEEEcC
Confidence 68899999999999999999999976544433211 111111111112446677776
Q ss_pred cCCC-hhhHHHHhhCC--cEEEecccccccchhHH------------------------------------HHhhChhhh
Q 008063 419 QHLA-SGTAARFGDQG--IVASMQPQHLLDDADSA------------------------------------RKKLGVDRA 459 (579)
Q Consensus 419 ~~~~-~~~~~~~~~~~--i~~~~~p~~~~~~~~~~------------------------------------~~~l~~~~~ 459 (579)
..-. .+.++++++.| +++.+||.+...+.+.+ ....++.|.
T Consensus 256 s~~~~~~~i~~ak~~G~~Vt~e~~p~~l~l~~~~~~~~~~~~~~~~g~~~d~~~~~~~~~~~~~~~~~~~~~~~~PplR~ 335 (559)
T 2fty_A 256 SSPQAAEVIKQAQTKGLKVYAETCPQYALLSDAITRCHHHGEVESYGVGIDLSSISESPFTNPDDRFIGSKYICSPPIRP 335 (559)
T ss_dssp CCHHHHHHHHHHHHTTCCEEEEECHHHHHCCGGGGSCC--------CCSCCGGGCSSSTTTCTTCTTGGGGGCCSSCCCC
T ss_pred CCHHHHHHHHHHHHcCCceEEeecCcccccCHHHhhccccccccccccccCccccccccccccCccccccCcEECCCCCC
Confidence 4311 12333444566 55688998654332211 011122232
Q ss_pred hhhhhhHHHHHHCCCeeeecCCCCCCCCC--------------------HHH---------HHHHH--HcccCCCCCCCC
Q 008063 460 ERESYLFQSLLANNALLALGSDWPVADIN--------------------PLC---------AIRTA--MKRIPPGWDNAW 508 (579)
Q Consensus 460 ~~~~~~l~~l~~~Gi~v~~gsD~~~~~~~--------------------~~~---------~~~~~--~~~~~~~~~~~~ 508 (579)
.....++..+++.|+++++|||.+....+ .+. +++.. +...
T Consensus 336 ~~~~~~l~~~l~~G~~~~igTD~~p~~~~~k~~~~~k~~~~~~~~~~~~~f~~~~~G~~g~e~~l~~ll~~~-------- 407 (559)
T 2fty_A 336 EGTQKSIWKGMNNGTFTIVGSDHCSYNYYEKTSTASKHRAFDPENNKNGEFRYIPNGLPGVCTRMPLLYDYG-------- 407 (559)
T ss_dssp TTSHHHHHHHHHTTSCSEECCCBCCCBSSCCSSTTBGGGGEEGGGTEESCGGGSCCCBCCTTTHHHHHHHHT--------
T ss_pred HHHHHHHHHHHhcCceEEEEeCCCCCChhhccccccccccccccccccCCHhhCCCCCccHHHHHHHHHHHH--------
Confidence 23445688899999999999997543321 111 11111 1111
Q ss_pred CCCCCC-CHHHHHHHHcHHHHHhcccCCccccccCC-CcccEEEeCCCC---------CC-Chhhcc-------------
Q 008063 509 IPSERI-SLTDALIAHTLSAARACFLENDVGSLSPG-KIADFVILSTSS---------WE-DFAAEV------------- 563 (579)
Q Consensus 509 ~~~~~l-s~~~al~~~T~npA~~lgl~~~~G~I~~G-~~ADlvvld~~~---------~~-~~~~~~------------- 563 (579)
.....+ +++++++++|.|||++||+++.+|+|++| +.|||||||.+. +. +..++.
T Consensus 408 v~~~~l~~~~~~~~~~t~~~A~~lgl~~~~G~i~~G~~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~s~~~~sp~~g~~~ 487 (559)
T 2fty_A 408 YLRGNLTSMMKLVEIQCTNPAKVYGMYPQKGSILPGVSDADLVIWYPDDSKKEYNSKPKLITNKLMEHNCDYTPFEGIEI 487 (559)
T ss_dssp TTTTSSSCHHHHHHHHTHHHHHHTTCTTTSSSCCTTTSBCCEEEECCSSCCCCCTTSCSBCCTGGGTSSCSCCTTTTCBC
T ss_pred HHcCCCCCHHHHHHHHhHHHHHHhCCCCCCceeeccCCcCCEEEEeCcccccccCCccEEEchHHhcccCCCCCccCCEe
Confidence 123458 99999999999999999997678999999 999999999884 43 322222
Q ss_pred CCeEEEEEECCEEeC
Q 008063 564 SASIEATYVSGVQAY 578 (579)
Q Consensus 564 ~~~v~~v~v~G~~v~ 578 (579)
..+|..||++|++||
T Consensus 488 ~g~v~~t~v~G~~v~ 502 (559)
T 2fty_A 488 KNWPRYTIVKGKIVY 502 (559)
T ss_dssp SCCEEEEEETTEEEE
T ss_pred cceEEEEEECCEEEE
Confidence 347999999999997
|
| >1gkp_A Hydantoinase; hydrolase, dihydropyrimidinase, cyclic amidase; HET: KCX EPE; 1.29A {Thermus SP} SCOP: b.92.1.3 c.1.9.6 PDB: 1gkq_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1e-29 Score=270.96 Aligned_cols=208 Identities=15% Similarity=0.101 Sum_probs=130.0
Q ss_pred CCHHHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHH------------------------HHHHhcCCCCCCceEeec
Q 008063 363 MELESLLSMTMASDKSGLQVAIHAIGDRANDLVLDMYK------------------------SVVVTTGKRDQRFRIEHA 418 (579)
Q Consensus 363 ~~~~~l~~~~~~a~~~g~~i~iH~~g~~~~~~~~~~~~------------------------~~~~~~~~~~~~~~i~H~ 418 (579)
.+++.+.++++.|++.+.++++|+.....++...+.+. +.....+..+.+.++.|+
T Consensus 160 ~~~~~l~~~~~~a~~~~~~v~~H~e~~~~~~~~~~~~~~~G~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~~~H~ 239 (458)
T 1gkp_A 160 VDDGEMYQTLRLAKELGVIVTAHCENAELVGRLQQKLLSEGKTGPEWHEPSRPEAVEAEGTARFATFLETTGATGYVVHL 239 (458)
T ss_dssp CCHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHHHHHHHTTCCSGGGTTTTSCHHHHHHHHHHHHHHHHHHTCEEEECSC
T ss_pred CCHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHhcCCCChhhccCcCCHHHHHHHHHHHHHHHHHhCCCEEEEeC
Confidence 67899999999999999999999965444433322211 111101112345566665
Q ss_pred cCCC-hhhHHHHhhCCcE--EEecccccccchhHH------HH---hhChhhhhhhhhhHHHHHHCCCeeeecCCCCCCC
Q 008063 419 QHLA-SGTAARFGDQGIV--ASMQPQHLLDDADSA------RK---KLGVDRAERESYLFQSLLANNALLALGSDWPVAD 486 (579)
Q Consensus 419 ~~~~-~~~~~~~~~~~i~--~~~~p~~~~~~~~~~------~~---~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD~~~~~ 486 (579)
.... .+.++.+++.|+. +.+||.+........ .. ..++.|.......+..+++.|+++++|||.....
T Consensus 240 ~~~~~~~~i~~~~~~G~~v~~~~~p~~~~~~~~~~~~~~~~g~~~~~~~p~r~~~~~~~l~~~~~~G~~~~~gtD~~~~~ 319 (458)
T 1gkp_A 240 SCKPALDAAMAAKARGVPIYIESVIPHFLLDKTYAERGGVEAMKYIMSPPLRDKRNQKVLWDALAQGFIDTVGTDHCPFD 319 (458)
T ss_dssp CSHHHHHHHHHHHHTTCCEEEEEEHHHHHCCGGGGGSCHHHHHTTCCSSCCCCTHHHHHHHHHHHTTSSCEEECCBCCCC
T ss_pred CCHHHHHHHHHHHHcCCeEEEEecccceeeCHHHhcccccCCcceEEeCCCCCHHHHHHHHHHHhcCCeeEEECCCCCCC
Confidence 4321 2457778888864 468887432211111 00 1123332233445678999999999999975432
Q ss_pred CC-------HHH-----------HHHHHHcccCCCCCCCCCCCCCCCHHHHHHHHcHHHHHhcccCCccccccCCCcccE
Q 008063 487 IN-------PLC-----------AIRTAMKRIPPGWDNAWIPSERISLTDALIAHTLSAARACFLENDVGSLSPGKIADF 548 (579)
Q Consensus 487 ~~-------~~~-----------~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~npA~~lgl~~~~G~I~~G~~ADl 548 (579)
.+ .+. .+...+.+. ....++|++++++++|.|||++||+++++|+|++||.|||
T Consensus 320 ~~~k~~~~~~~~~~~~g~~g~~~~l~~~~~~~--------~~~~~ls~~~al~~~T~~pA~~lgl~~~~G~l~~G~~ADl 391 (458)
T 1gkp_A 320 TEQKLLGKEAFTAIPNGIPAIEDRVNLLYTYG--------VSRGRLDIHRFVDAASTKAAKLFGLFPRKGTIAVGSDADL 391 (458)
T ss_dssp HHHHGGGSSCGGGSCCCBCCTTTHHHHHHHHH--------TTSSSCCHHHHHHHHTHHHHHHTTCTTTSSSCCTTSBCCE
T ss_pred HHHhhcccCChhhCCCCcccHHHHHHHHHHHH--------HHcCCCCHHHHHHHHhhCHHHHhCCCCCCCcCCCCCcCCE
Confidence 11 110 111111111 0123499999999999999999999877999999999999
Q ss_pred EEeCCCCCC--C------------hhhc-cCCeEEEEEECCEEeC
Q 008063 549 VILSTSSWE--D------------FAAE-VSASIEATYVSGVQAY 578 (579)
Q Consensus 549 vvld~~~~~--~------------~~~~-~~~~v~~v~v~G~~v~ 578 (579)
||+|.++.. + +..+ ...+|..||++|++||
T Consensus 392 vv~d~~~~~~~~~~~~~~~~~~~p~~g~~~~~~v~~v~v~G~~v~ 436 (458)
T 1gkp_A 392 VVYDPQYRGTISVKTQHVNNDYNGFEGFEIDGRPSVVTVRGKVAV 436 (458)
T ss_dssp EEEETTCCEECCGGGCCSSSSCCTTTTCEESCEEEEEEETTEEEE
T ss_pred EEEeCCCCeEEchHHcccccCCCccCCCEEeeEEEEEEECCEEEE
Confidence 999988642 1 1111 1347999999999986
|
| >3gri_A Dihydroorotase, dhoase; hydrolase, IDP00795, metal-binding, pyrimidine biosynthesis, structural genomics; 2.00A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=99.97 E-value=7.5e-30 Score=268.91 Aligned_cols=350 Identities=18% Similarity=0.243 Sum_probs=215.6
Q ss_pred EEEEcCeEEeCCCCCCeeeEEEEECCEEEEecChHHHHhhccCCCeEEeCCCCeeecccccccccccccCccccccccCC
Q 008063 47 LVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHFIPGGLQMARVKLRG 126 (579)
Q Consensus 47 ~likn~~v~~~~~~~~~~~~v~I~~GkI~~Ig~~~~~~~~~~~~~~viD~~g~~V~PG~ID~H~H~~~~~~~~~~~~~~~ 126 (579)
++|+|++|++ .+ ....++|+|+||||++|++..+. +++.++||++|++|+|||||+|+|+...+..
T Consensus 2 ~~i~~~~v~~-~~-~~~~~~v~i~~g~I~~i~~~~~~----~~~~~~id~~g~~v~PG~iD~H~H~~~~g~~-------- 67 (424)
T 3gri_A 2 KLIKNGKVLQ-NG-ELQQADILIDGKVIKQIAPAIEP----SNGVDIIDAKGHFVSPGFVDVHVHLREPGGE-------- 67 (424)
T ss_dssp EEEESCEEEE-TT-EEEECEEEEETTEEEEEESCCCC----CSSCEEEECTTCEEEECEEEEEECCCTTTCT--------
T ss_pred EEEEeeEEEc-CC-CceeeeEEEECCEEEEecCCCCC----CCCCeEEECCCCEEEeCeEEeeecCCCCCCC--------
Confidence 7899999999 33 44778999999999999975431 2467899999999999999999998643210
Q ss_pred CCCHHHHHHHHHHHHHcCCCCCeEEEeCCCCCCCCCCCCChHHhhhhCCCCeEEEEeCCCchhhhcHHHHHHcCCCCCCC
Q 008063 127 VSHKDEFVRRVKEAVKNSKKGSWILGGGWNNDLWGGDLPMASWIDDITPHNPVWLSRMDGHMGLANSVALQLVGITNLSE 206 (579)
Q Consensus 127 ~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~p~~~~ld~~~~~~p~~~~~~~~~~~~~n~~~~~~~g~~~~~~ 206 (579)
.
T Consensus 68 ---------------------------------------~---------------------------------------- 68 (424)
T 3gri_A 68 ---------------------------------------Y---------------------------------------- 68 (424)
T ss_dssp ---------------------------------------T----------------------------------------
T ss_pred ---------------------------------------C----------------------------------------
Confidence 0
Q ss_pred CCCCCeEEeCCCCCcCEEEhHhHHHHhcccCCCCCHHHHHHHHHHHHHHHHhcCccEEEeCCcCCCCCccccchHHHHHH
Q 008063 207 DPNGGTIMKTSSGEPTGLLIDAAMKLILPWIPEVSVDERREALLRASNLALSRGVTTVVDFGRYYPGESVQLSWEDFADV 286 (579)
Q Consensus 207 ~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Git~v~~~~~~~~~~~~~~~~~~~~~~ 286 (579)
.+.+....+.+++.|+|++.++....+.. ...+.....
T Consensus 69 ---------------------------------------~~~~~~~~~~~~~~G~t~~~~~~~~~~~~---~~~~~~~~~ 106 (424)
T 3gri_A 69 ---------------------------------------KETIETGTKAAARGGFTTVCPMPNTRPVP---DSVEHFEAL 106 (424)
T ss_dssp ---------------------------------------TCCHHHHHHHHHHTTEEEEEECSCSSSCS---CSHHHHHHH
T ss_pred ---------------------------------------HHHHHHHHHHHHhCCEEEEeECcCCCCCC---ChHHHHHHH
Confidence 00123356667999999999986432222 223333344
Q ss_pred HHHHhhcCCCeeEEEEccCccc------hhhHHHHHHhcCCCCCCceEEceEEEEEcCccCCCcccccCCCCCCCCCCcc
Q 008063 287 YQWASYSEKMKIRVCLFFPLET------WSSLADLINKTGHVLSDWVYLGGVKAFADGSLGSNSALFHEPYADEPHNYGL 360 (579)
Q Consensus 287 ~~~~~~~~~~~i~v~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~g~k~~~dg~~~~~~~~~~~~~~~~~~~~~~ 360 (579)
.+.+...+. .++..+..... ..+..+.... |...+.+ .+.
T Consensus 107 ~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~l~~l~~~------------G~~~~~~--------------------~~~ 152 (424)
T 3gri_A 107 QKLIDDNAQ--VRVLPYASITTRQLGKELVDFPALVKE------------GAFAFTD--------------------DGV 152 (424)
T ss_dssp HHHHHHHCS--SEECCCEESBGGGCSSSBCCHHHHHTT------------TCCCEEE--------------------CSS
T ss_pred HHHhccCCC--ceEEEEEEEecCCCcchHHHHHHHHhc------------CcEEEec--------------------CCc
Confidence 444443332 23322211111 1112222110 0000000 012
Q ss_pred cCCCHHHHHHHHHHHHHCCCeEEEEecchHH-------------------------HHHHHHHHHHHHHhcCCCCCCceE
Q 008063 361 QVMELESLLSMTMASDKSGLQVAIHAIGDRA-------------------------NDLVLDMYKSVVVTTGKRDQRFRI 415 (579)
Q Consensus 361 ~~~~~~~l~~~~~~a~~~g~~i~iH~~g~~~-------------------------~~~~~~~~~~~~~~~~~~~~~~~i 415 (579)
...+++.+.++++.++++|.++.+|+..... ...+.+.+. ..... +.+.++
T Consensus 153 ~~~~~~~l~~~~~~a~~~g~~v~~H~e~~~~~~~~~~~~g~~~~~~~~~~~p~~~E~~~v~r~~~-la~~~---g~~~~i 228 (424)
T 3gri_A 153 GVQTASMMYEGMIEAAKVNKAIVAHCEDNSLIYGGAMHEGKRSKELGIPGIPNICESVQIARDVL-LAEAA---GCHYHV 228 (424)
T ss_dssp CCCSHHHHHHHHHHHHHHTCCEEECCCCGGGCTTCCEESSHHHHHHTCCEECTHHHHHHHHHHHH-HHHHH---TCCEEE
T ss_pred CcCCHHHHHHHHHHHHhcCCEEEEeCCCHHHHhhhhhhcCccchhhCCCCCCHHHHHHHHHHHHH-HHHHh---CCcEEE
Confidence 2367899999999999999999999974321 111111111 11222 347788
Q ss_pred eeccCCCh-hhHHHHhhCC--cEEEecccccccchhHH------HHhhChhhhhhhhhhHHHHHHCCCeeeecCCCCCCC
Q 008063 416 EHAQHLAS-GTAARFGDQG--IVASMQPQHLLDDADSA------RKKLGVDRAERESYLFQSLLANNALLALGSDWPVAD 486 (579)
Q Consensus 416 ~H~~~~~~-~~~~~~~~~~--i~~~~~p~~~~~~~~~~------~~~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD~~~~~ 486 (579)
.|+..... +.++..++.| +.+.+||++.....+.+ ....++.|.......+...++.|+..++|||+....
T Consensus 229 ~H~s~~~~~~~i~~ak~~G~~v~~e~~ph~l~l~~~~~~~~~~~~~~~Pplr~~~~~~~L~~~l~~G~i~~igtDhap~~ 308 (424)
T 3gri_A 229 CHVSTKESVRVIRDAKRAGIHVTAEVTPHHLLLTEDDIPGNNAIYKMNPPLRSTEDREALLEGLLDGTIDCIATDHAPHA 308 (424)
T ss_dssp CSCCCHHHHHHHHHHHHTTCCEEEEECHHHHHCCGGGCCSSCGGGCCSSCCCCHHHHHHHHHHHHTTSSCEECCCBCCCC
T ss_pred EeCCCHHHHHHHHHHHHcCCCEEEEecHHHHhcCHHHHhCcCceEEEeCCCCCHHHHHHHHHHHhcCCceEEEcCCCCCC
Confidence 88753222 3344444444 67788998775443322 122344444455667888899999999999974332
Q ss_pred CC---------------HHHHHHHHHcccCCCCCCCCCCCCCCCHHHHHHHHcHHHHHhcccCCccccccCCCcccEEEe
Q 008063 487 IN---------------PLCAIRTAMKRIPPGWDNAWIPSERISLTDALIAHTLSAARACFLENDVGSLSPGKIADFVIL 551 (579)
Q Consensus 487 ~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~npA~~lgl~~~~G~I~~G~~ADlvvl 551 (579)
.+ .-..+...+.. +....+++++++++++|.|||+++|+ .+|+|++|+.|||||+
T Consensus 309 ~~~k~~~~~~~~~G~~g~e~~~~~~~~~--------~~~~~~~~~~~~~~~~t~~~a~~~g~--~~g~l~~G~~Ad~~~~ 378 (424)
T 3gri_A 309 RDEKAQPMEKAPFGIVGSETAFPLLYTH--------FVKNGDWTLQQLVDYLTIKPCETFNL--EYGTLKENGYADLTII 378 (424)
T ss_dssp HHHHTSCTTTSCCCCCCTTTHHHHHHHH--------HTTTSSCCHHHHHHHHTHHHHHHTTC--SCSCCCTTSBCCEEEE
T ss_pred HHHccCCHhHCCCCCccccccHHHHHHH--------HHHcCCCCHHHHHHHHhHHHHHHhCC--CCCcccCCCcCCEEEE
Confidence 10 00011111110 11345699999999999999999999 3799999999999999
Q ss_pred CCC-CCC-Chhhcc-------------CCeEEEEEECCEEeCC
Q 008063 552 STS-SWE-DFAAEV-------------SASIEATYVSGVQAYP 579 (579)
Q Consensus 552 d~~-~~~-~~~~~~-------------~~~v~~v~v~G~~v~~ 579 (579)
|.+ ++. +.+++. ..+|..||++|++||.
T Consensus 379 d~~~~~~~~~~~~~~~~~~sp~~g~~~~g~v~~t~~~G~~v~~ 421 (424)
T 3gri_A 379 DLDSEQEIKGEDFLSKADNTPFIGYKVYGNPILTMVEGEVKFE 421 (424)
T ss_dssp ESSCCEECCGGGCSSSCCCCTTTTCEESCEEEEEEETTEEEEE
T ss_pred cCCCCEEEchhhcccccCCCCcCCCEEeeeEEEEEECCEEEEe
Confidence 988 333 323222 4689999999999973
|
| >1yrr_A N-acetylglucosamine-6-phosphate deacetylase; (beta/alpha)8 barrel, beta sandwich, hydrolase; 2.00A {Escherichia coli} SCOP: b.92.1.5 c.1.9.10 PDB: 1ymy_A 2p50_A 2p53_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.2e-30 Score=271.49 Aligned_cols=181 Identities=14% Similarity=0.101 Sum_probs=126.9
Q ss_pred HHHHHHHHHHHCCCeEEE-Eecc-hHHHHHHHHHHHHHHHhc--CCCC---------------CCc---eEeeccCCChh
Q 008063 367 SLLSMTMASDKSGLQVAI-HAIG-DRANDLVLDMYKSVVVTT--GKRD---------------QRF---RIEHAQHLASG 424 (579)
Q Consensus 367 ~l~~~~~~a~~~g~~i~i-H~~g-~~~~~~~~~~~~~~~~~~--~~~~---------------~~~---~i~H~~~~~~~ 424 (579)
.+.++++.|+++|+++.+ |+.+ ..++...++......... +... .+. .+.|+.+++++
T Consensus 176 ~~~~~~~~a~~~g~~v~~gH~~~~~~~~~~~~~~G~~~~~h~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~h~~~~~~~ 255 (382)
T 1yrr_A 176 VPAEVISKLANAGIVVSAGHSNATLKEAKAGFRAGITFATHLYNAMPYITGREPGLAGAILDEADIYCGIIADGLHVDYA 255 (382)
T ss_dssp SCHHHHHHHHHTTCEEEECSCCCCHHHHHHHHHHTCCEESSTTTTSCCBCSSCCHHHHHHHHCTTCEEEEECSSSSSCHH
T ss_pred ChHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHcCCCeeEECCCCCCccccCCcchhhHhhcCCcceeeecCcccccCHH
Confidence 345788999999999998 9984 444555544321111100 0000 012 68899999999
Q ss_pred hHHHHhhCC-cEEEecccccccchhHHHHhhChhhhhhhhhhHHHHHHCCCee-eecCCCCCCCCCHHHHHHHHHcccCC
Q 008063 425 TAARFGDQG-IVASMQPQHLLDDADSARKKLGVDRAERESYLFQSLLANNALL-ALGSDWPVADINPLCAIRTAMKRIPP 502 (579)
Q Consensus 425 ~~~~~~~~~-i~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~~Gi~v-~~gsD~~~~~~~~~~~~~~~~~~~~~ 502 (579)
+++++++.+ ..+.+++......+ +....-....++.+++.|+++ ..|||.+ ...+++.+++.++..
T Consensus 256 ~~~~~~~~~~~~~~~~~d~~~~~g--------~~~~~~~~~~~~~~~~~Gv~~~~~Gt~~g-~~~~~~~~~~~~~~~--- 323 (382)
T 1yrr_A 256 NIRNAKRLKGDKLCLVTDATAPAG--------ANIEQFIFAGKTIYYRNGLCVDENGTLSG-SSLTMIEGVRNLVEH--- 323 (382)
T ss_dssp HHHHHHHHHGGGEEEECCBCTTTT--------SCCSEEEETTEEEEECSSCEECTTCCEEE-BCCCHHHHHHHHHHH---
T ss_pred HHHHHHHcCCCcEEEECcChHhcC--------CCCceEEECCEEEEEECCEEEeCCCcCcC-CccCHHHHHHHHHHH---
Confidence 999988876 55556665543111 000000011245677899987 5677753 346889999887742
Q ss_pred CCCCCCCCCCCCCHHHHHHHHcHHHHHhcccCCccccccCCCcccEEEeCCCCCCChhhccCCeEEEEEECCEEeC
Q 008063 503 GWDNAWIPSERISLTDALIAHTLSAARACFLENDVGSLSPGKIADFVILSTSSWEDFAAEVSASIEATYVSGVQAY 578 (579)
Q Consensus 503 ~~~~~~~~~~~ls~~~al~~~T~npA~~lgl~~~~G~I~~G~~ADlvvld~~~~~~~~~~~~~~v~~v~v~G~~v~ 578 (579)
.+++++++|+++|.|||++||+++++|+|+|||.|||||+|.|+ +|..||++|++||
T Consensus 324 ---------~g~~~~~al~~aT~~~A~~lg~~~~~G~i~~G~~ADlvvld~~~----------~v~~v~~~G~~v~ 380 (382)
T 1yrr_A 324 ---------CGIALDEVLRMATLYPARAIGVEKRLGTLAAGKVANLTAFTPDF----------KITKTIVNGNEVV 380 (382)
T ss_dssp ---------HCCCHHHHHHHHTHHHHHHTTCTTTSSSCCTTSBCCEEEECTTS----------CEEEEEETTEEEE
T ss_pred ---------hCCCHHHHHHHHHHHHHHHhCCCCCCCccCCCCCCCEEEECCCC----------CEEEEEECCEEEE
Confidence 25899999999999999999999889999999999999999875 7999999999987
|
| >3mpg_A Dihydroorotase, dhoase; hydrolase; 2.60A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=99.97 E-value=5.9e-30 Score=270.28 Aligned_cols=351 Identities=20% Similarity=0.255 Sum_probs=216.7
Q ss_pred ccEEEEcCeEEeCCCCCCeeeEEEEECCEEEEecChHHHHhhccCCCeEEeCCCCeeecccccccccccccCcccccccc
Q 008063 45 ADLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHFIPGGLQMARVKL 124 (579)
Q Consensus 45 ~~~likn~~v~~~~~~~~~~~~v~I~~GkI~~Ig~~~~~~~~~~~~~~viD~~g~~V~PG~ID~H~H~~~~~~~~~~~~~ 124 (579)
|+++|+|++|++..+ ....++|+|+||||++|++..+ +++.++||++|++|+|||||+|+|+...+..
T Consensus 1 m~~~i~~~~v~~~~~-~~~~~~v~i~~g~I~~i~~~~~-----~~~~~~id~~g~~v~PG~iD~H~H~~~~~~~------ 68 (428)
T 3mpg_A 1 MNYLFKNGRYMNEEG-KIVATDLLVQDGKIAKVAENIT-----ADNAEVIDVNGKLIAPGLVDVHVHLREPGGE------ 68 (428)
T ss_dssp CEEEEEEEEEECSSS-CEEEEEEEEESSBEEECCSSCC-----CTTSEEEECTTCEEEECEEEEEECCCTTTCT------
T ss_pred CcEEEEeeEEEeCCC-CeeeeeEEEECCEEEEecCCCC-----CCCCeEEECCCCEEeeCEEEEeeccCCCCCC------
Confidence 578999999998544 4577899999999999997543 2467899999999999999999998543210
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCCCeEEEeCCCCCCCCCCCCChHHhhhhCCCCeEEEEeCCCchhhhcHHHHHHcCCCCC
Q 008063 125 RGVSHKDEFVRRVKEAVKNSKKGSWILGGGWNNDLWGGDLPMASWIDDITPHNPVWLSRMDGHMGLANSVALQLVGITNL 204 (579)
Q Consensus 125 ~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~p~~~~ld~~~~~~p~~~~~~~~~~~~~n~~~~~~~g~~~~ 204 (579)
.
T Consensus 69 -----------------------------------------~-------------------------------------- 69 (428)
T 3mpg_A 69 -----------------------------------------H-------------------------------------- 69 (428)
T ss_dssp -----------------------------------------T--------------------------------------
T ss_pred -----------------------------------------c--------------------------------------
Confidence 0
Q ss_pred CCCCCCCeEEeCCCCCcCEEEhHhHHHHhcccCCCCCHHHHHHHHHHHHHHHHhcCccEEEeCCcCCCCCccccchHHHH
Q 008063 205 SEDPNGGTIMKTSSGEPTGLLIDAAMKLILPWIPEVSVDERREALLRASNLALSRGVTTVVDFGRYYPGESVQLSWEDFA 284 (579)
Q Consensus 205 ~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Git~v~~~~~~~~~~~~~~~~~~~~ 284 (579)
.+.+....+.+.+.|+|++.++....+.. ...+...
T Consensus 70 -----------------------------------------~~~~~~~~~~~~~~GvTt~~~~~~~~~~~---~~~~~~~ 105 (428)
T 3mpg_A 70 -----------------------------------------KETIETGTLAAAKGGFTTICAMPNTRPVP---DCREHME 105 (428)
T ss_dssp -----------------------------------------TCCHHHHHHHHHHHTEEEEEECSCSSSCS---CSHHHHH
T ss_pred -----------------------------------------hhHHHHHHHHHHhCCeEEEEeCCCCCCCC---CcHHHHH
Confidence 00123356678999999999986432222 2233333
Q ss_pred HHHHHHhhcCCCeeEEEEccCccc------hhhHHHHHHhcCCCCCCceEEceEEEEEcCccCCCcccccCCCCCCCCCC
Q 008063 285 DVYQWASYSEKMKIRVCLFFPLET------WSSLADLINKTGHVLSDWVYLGGVKAFADGSLGSNSALFHEPYADEPHNY 358 (579)
Q Consensus 285 ~~~~~~~~~~~~~i~v~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~g~k~~~dg~~~~~~~~~~~~~~~~~~~~ 358 (579)
...+......... +..+..... ..+..+.... |...+.+ .
T Consensus 106 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~l~~~------------G~~~~~~--------------------~ 151 (428)
T 3mpg_A 106 DLQNRIKEKAHVN--VLPYGAITVRQAGSEMTDFETLKEL------------GAFAFTD--------------------D 151 (428)
T ss_dssp HHHHHHHHHCSSE--EEECEESBGGGCSSSBCCHHHHHHT------------TCCCEEC--------------------T
T ss_pred HHHHHhcccCCcE--EEEEeeEecCCCcchHHHHHHHHHh------------CCEEEEC--------------------C
Confidence 4444444444222 222211111 1112222111 0000000 0
Q ss_pred cccCCCHHHHHHHHHHHHHCCCeEEEEecchHH-------------------------HHHHHHHHHHHHHhcCCCCCCc
Q 008063 359 GLQVMELESLLSMTMASDKSGLQVAIHAIGDRA-------------------------NDLVLDMYKSVVVTTGKRDQRF 413 (579)
Q Consensus 359 ~~~~~~~~~l~~~~~~a~~~g~~i~iH~~g~~~-------------------------~~~~~~~~~~~~~~~~~~~~~~ 413 (579)
+....+++.+.++++.++++|.++.+|+..... ...+.+.+. ..... +.+.
T Consensus 152 ~~~~~~~~~l~~~~~~a~~~g~~v~vH~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~e~~~v~~~~~-la~~~---g~~~ 227 (428)
T 3mpg_A 152 GVGVQDASMMLAAMKRAAKLNMAVVAHCEENTLINKGCVHEGKFSEKHGLNGIPSVCESVHIARDIL-LAEAA---DCHY 227 (428)
T ss_dssp TSCCCCHHHHHHHHHHHHHTTCCEEECCCCGGGCTTCSEETTHHHHHTTCCEECTHHHHHHHHHHHH-HHHHH---TCCE
T ss_pred CcCCCCHHHHHHHHHHHHhcCCeEEEECCChhHhhhHHhhcCccchhhCcCCCCHHHHHHHHHHHHH-HHHHh---CCCE
Confidence 122367899999999999999999999974310 011111111 11112 3477
Q ss_pred eEeeccCCCh-hhHHHHhhCC--cEEEecccccccchhHH------HHhhChhhhhhhhhhHHHHHHCCCeeeecCCCCC
Q 008063 414 RIEHAQHLAS-GTAARFGDQG--IVASMQPQHLLDDADSA------RKKLGVDRAERESYLFQSLLANNALLALGSDWPV 484 (579)
Q Consensus 414 ~i~H~~~~~~-~~~~~~~~~~--i~~~~~p~~~~~~~~~~------~~~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD~~~ 484 (579)
.+.|+..... +.++.+++.| +.+.+||.+.....+.+ .+..++.|......++..+++.|+..+++||.+.
T Consensus 228 ~i~H~s~~~~~~~i~~a~~~G~~v~~e~~p~~l~l~~~~~~~~~~~~~~~Pplr~~~~~~~l~~~l~~G~i~~i~tDh~p 307 (428)
T 3mpg_A 228 HVCHVSTKGSVRVIRDAKRAGIKVTAEVTPHHLVLCEDDIPSADPNFKMNPPLRGKEDHEALIEGLLDGTIDMIATDHAP 307 (428)
T ss_dssp EECSCCCHHHHHHHHHHHHTTCCEEECBCHHHHHCCGGGCCSSCGGGCCSSCCCCHHHHHHHHHHHHHTSSCCBCCCBCC
T ss_pred EEEeCCCHHHHHHHHHHHhcCCCEEEEEchHHhEECHHHHhCCCCeEEEeCCCCCHHHHHHHHHHHhCCCCcEEEcCCCC
Confidence 7888764222 3445555555 56677887765333221 1233444444556678888999999999999764
Q ss_pred CCCCHH---------------HHHHHHHcccCCCCCCCCCCCCCCCHHHHHHHHcHHHHHhcccCCccccccCCCcccEE
Q 008063 485 ADINPL---------------CAIRTAMKRIPPGWDNAWIPSERISLTDALIAHTLSAARACFLENDVGSLSPGKIADFV 549 (579)
Q Consensus 485 ~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~npA~~lgl~~~~G~I~~G~~ADlv 549 (579)
...+.. ..+...+.. +....+++++++++++|.|||++||++ +|+|++|+.||||
T Consensus 308 ~~~~~k~~~~~~~p~g~~g~e~~~~~~~~~--------~~~~~~~~~~~~~~~~t~~~a~~~g~~--~g~i~~G~~Ad~~ 377 (428)
T 3mpg_A 308 HTAEEKAQGIERAPFGITGFETAFPLLYTN--------LVKKGIITLEQLIQFLTEKPADTFGLE--AGRLKEGRTADIT 377 (428)
T ss_dssp CCTTGGGSCTTTSCSCCCCTTTHHHHHHHH--------TTTTTSSCHHHHHHTTTHHHHHHHTCS--CSCCCTTSBCCEE
T ss_pred CCHHHcccCHhhCCCCceehhhHHHHHHHH--------HHHcCCCCHHHHHHHHhHHHHHHhCCC--CccccCCCcCCEE
Confidence 432110 011111111 113356999999999999999999997 7999999999999
Q ss_pred EeCCCC-CC-Chhhcc-------------CCeEEEEEECCEEeC
Q 008063 550 ILSTSS-WE-DFAAEV-------------SASIEATYVSGVQAY 578 (579)
Q Consensus 550 vld~~~-~~-~~~~~~-------------~~~v~~v~v~G~~v~ 578 (579)
|+|.+. +. +.+++. ..+|..||++|++||
T Consensus 378 ~~d~~~~~~~~~~~~~~~~~~~~~~g~~~~g~v~~t~v~G~~v~ 421 (428)
T 3mpg_A 378 IIDLEQEEEIDPTTFLSKGKNTPFAGWKCQGWPVMTIVGGKIAW 421 (428)
T ss_dssp EEESSCCEECCGGGCSSSCCCCSCTTCEECCEEEEEEETTEEEE
T ss_pred EEcCCCCEEEchhhccccCCCCCcCCCEEeeEEEEEEECCEEEE
Confidence 999764 22 222211 347999999999987
|
| >2gwn_A Dihydroorotase; zinc-binding prote structural genomics, PSI, protein structure initiative, MID center for structural genomics, MCSG; HET: KCX GOL; 1.85A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.8e-29 Score=268.25 Aligned_cols=156 Identities=19% Similarity=0.203 Sum_probs=100.2
Q ss_pred CCceEeeccCCChhhHHHHhh------CCcEEEecccccccchhHHHH------hhChhhhhhhhhhHHHHHHCCCeeee
Q 008063 411 QRFRIEHAQHLASGTAARFGD------QGIVASMQPQHLLDDADSARK------KLGVDRAERESYLFQSLLANNALLAL 478 (579)
Q Consensus 411 ~~~~i~H~~~~~~~~~~~~~~------~~i~~~~~p~~~~~~~~~~~~------~l~~~~~~~~~~~l~~l~~~Gi~v~~ 478 (579)
.+.++.|+. +.+.++.+++ ..+.+.++|++...+.+.+.. ..++.+......+++.++++|+++++
T Consensus 236 ~~v~i~H~~--~~~~~~~~~~~~a~~~~~v~~~~~~h~~~l~~~~~~~~g~~~~~~P~lr~~~~~~~l~~~l~~Gv~~~l 313 (452)
T 2gwn_A 236 ARLHILHLS--TEKELSLFRNDIPTAQKRITSEVCVHHLWFSDTDYGRLGNRIKWNPAIKKESDREALRAAVRNGRIDII 313 (452)
T ss_dssp CCEEECCCC--CTGGGGGSCCSSCGGGCSEEEEEEHHHHHCCGGGHHHHGGGGCCSSCCCCHHHHHHHHHHHHHSSSCEE
T ss_pred CCEEEEeCC--CHHHHHHHHHhhcccCCCeEEEEchHHhhcCHHHHhccCceEEECCCCCCHHHHHHHHHHHHCCCceEE
Confidence 456666766 3344444333 246666677665443333321 11111222356688999999999999
Q ss_pred cCCCCCCCC-----CHHH--------HH--HHHHcccCCCCCCCCCCCCCCCHHHHHHHHcHHHHHhcccCCccccccCC
Q 008063 479 GSDWPVADI-----NPLC--------AI--RTAMKRIPPGWDNAWIPSERISLTDALIAHTLSAARACFLENDVGSLSPG 543 (579)
Q Consensus 479 gsD~~~~~~-----~~~~--------~~--~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~npA~~lgl~~~~G~I~~G 543 (579)
|||++.... +.+. ++ ...+... ...+++++++++++|.|||++||++ .+|+|++|
T Consensus 314 gTD~~~~~~~~k~~~~~~~~~g~~~~e~~~~~~~~~~---------~~~~ls~~~~l~~~T~~~A~~lgl~-~~G~l~~G 383 (452)
T 2gwn_A 314 ATDHAPHLLREKEGSCLQAASGGPLVQHSLLALLELC---------NQGIFSIEEIVSKTAHIPATLFAIE-KRGYIRPG 383 (452)
T ss_dssp ECCBCCCCHHHHCSCTTTSCCCCCCTTTHHHHHHHHH---------HTTSSCHHHHHHHHTHHHHHHHTBT-TCSSCCTT
T ss_pred EeCCCCCChHHhcCChhhCCCCCccHHHHHHHHHHHH---------HcCCCCHHHHHHHHhHhHHHHcCCC-CCCcccCC
Confidence 999753321 1111 11 0111100 1346999999999999999999998 58999999
Q ss_pred CcccEEEeCCCCC-C-Chhhcc-------------CCeEEEEEECCEEeC
Q 008063 544 KIADFVILSTSSW-E-DFAAEV-------------SASIEATYVSGVQAY 578 (579)
Q Consensus 544 ~~ADlvvld~~~~-~-~~~~~~-------------~~~v~~v~v~G~~v~ 578 (579)
|.|||||+|.++. . +..++. ..+|..||++|++||
T Consensus 384 ~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~g~~~~~~v~~v~v~G~~v~ 433 (452)
T 2gwn_A 384 YYADLVLVDPSSPHTVSADNILSLCGWSPFEGFTFSHSVAYTFVNGCLAY 433 (452)
T ss_dssp SBCCEEEEETTSCEECCTTTCCSTTCCCTTTTCEESCEEEEEEETTEEEE
T ss_pred CcCCEEEEcCCCCeEECHHHccccCCCCCCCCcEEeeeEEEEEECCEEEE
Confidence 9999999999853 2 222221 458999999999986
|
| >2ogj_A Dihydroorotase; TIM barrel, binuclear zinc, imidazole complex, amido hydrola 9244B, structural genomics, PSI-2; HET: KCX; 2.62A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=99.97 E-value=6.2e-30 Score=269.22 Aligned_cols=176 Identities=13% Similarity=0.098 Sum_probs=123.8
Q ss_pred CCHHHHHHHHHHHHHCCCeEEEEecchHH-HHHHHHHHHHHHHhcCCCCCCceEeeccCCCh-----------hhHHHHh
Q 008063 363 MELESLLSMTMASDKSGLQVAIHAIGDRA-NDLVLDMYKSVVVTTGKRDQRFRIEHAQHLAS-----------GTAARFG 430 (579)
Q Consensus 363 ~~~~~l~~~~~~a~~~g~~i~iH~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~i~H~~~~~~-----------~~~~~~~ 430 (579)
++.+.+.+.++.+++.|+++.+|+..... .+.....+ .....+.|+....+ +++.+++
T Consensus 186 ~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~l----------~~g~~~~H~~~~~~~~~~~~~~~~~~~i~~~~ 255 (417)
T 2ogj_A 186 WGVTPVKLGKKIAKILKVPMMVHVGEPPALYDEVLEIL----------GPGDVVTHCFNGKSGSSIMEDEDLFNLAERCA 255 (417)
T ss_dssp CTTHHHHHHHHHHHHHTCCEEEEECSSSSCHHHHHHHC----------CTTCEEETTTCCCTTTCTTSCHHHHHHHHHC-
T ss_pred ccHHHHHHHHHHHHHcCCcEEEEcCCCcccHHHHHHHh----------cCCCEEEeccCCCccchhccCHHHHHHHHHHH
Confidence 46678888999999999999999964221 22222221 11368889876443 4777788
Q ss_pred hCCcEEEecccccccchhHHHHhhChhhhhhhhhhHHHHHHCC-CeeeecCCCCCCC-C-----CHHHHHHHHHcccCCC
Q 008063 431 DQGIVASMQPQHLLDDADSARKKLGVDRAERESYLFQSLLANN-ALLALGSDWPVAD-I-----NPLCAIRTAMKRIPPG 503 (579)
Q Consensus 431 ~~~i~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~~G-i~v~~gsD~~~~~-~-----~~~~~~~~~~~~~~~~ 503 (579)
+.|+.+.++|.... ....+++.+.++| +++++|||.+ .+ . .....+...+.
T Consensus 256 ~~g~~v~~~~~~~~----------------~~~~~~~~~~~~G~~~~~lgtD~~-~~~~~g~~~~l~~~~~~~~~----- 313 (417)
T 2ogj_A 256 GEGIRLDIGHGGAS----------------FSFKVAEAAIARGLLPFSISTDLH-GHSMNFPVWDLATTMSKLLS----- 313 (417)
T ss_dssp -CCCEEECCBCSSS----------------CCHHHHHHHHHTTCCCSBCCBCBS-TTTTTTTCCCHHHHHHHHHH-----
T ss_pred hcCcEEEecCCCcc----------------ccchHHHHHHHcCCCceEEEcCCC-CCccCCChhHHHHHHHHHHH-----
Confidence 88988887776432 1133678999999 9999999976 32 1 22233322221
Q ss_pred CCCCCCCCCCCCHHHHHHHHcHHHHHhcccCCccccccCCCcccEEEeCCCCCC----Chh-hcc----CCeEEEEEECC
Q 008063 504 WDNAWIPSERISLTDALIAHTLSAARACFLENDVGSLSPGKIADFVILSTSSWE----DFA-AEV----SASIEATYVSG 574 (579)
Q Consensus 504 ~~~~~~~~~~ls~~~al~~~T~npA~~lgl~~~~G~I~~G~~ADlvvld~~~~~----~~~-~~~----~~~v~~v~v~G 574 (579)
.+++++++++++|.|||+.||+++ +|+|+|||.|||||+|.+... ++. ... ..+|..||++|
T Consensus 314 --------~~l~~~~al~~~T~n~A~~lgl~~-~G~l~~G~~ADlvv~d~~~~~~~~~~~~g~~~~~~~~~~v~~t~v~G 384 (417)
T 2ogj_A 314 --------VDMPFENVVEAVTRNPASVIRLDM-ENRLDVGQRADFTVFDLVDADLEATDSNGDVSRLKRLFEPRYAVIGA 384 (417)
T ss_dssp --------TTCCHHHHHHTTTHHHHHHTTCCC-SSTTSTTSBCEEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEEEETT
T ss_pred --------cCCCHHHHHHHHHHHHHHHhCCCC-CCccCCCCcccEEEEecccCCceecCCCCceEecccccceEEEEECC
Confidence 359999999999999999999998 899999999999999976421 111 111 23899999999
Q ss_pred EEeCC
Q 008063 575 VQAYP 579 (579)
Q Consensus 575 ~~v~~ 579 (579)
++||.
T Consensus 385 ~~v~~ 389 (417)
T 2ogj_A 385 EAIAA 389 (417)
T ss_dssp EEEEC
T ss_pred EEEEe
Confidence 99874
|
| >1nfg_A D-hydantoinase; TIM barrel, hydrolase; HET: KCX; 2.70A {Ralstonia pickettii} SCOP: b.92.1.3 c.1.9.6 | Back alignment and structure |
|---|
Probab=99.97 E-value=3.6e-29 Score=266.59 Aligned_cols=202 Identities=17% Similarity=0.163 Sum_probs=124.3
Q ss_pred CCHHHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHH------------------------HH---HHHhcCCCCCCceE
Q 008063 363 MELESLLSMTMASDKSGLQVAIHAIGDRANDLVLDMY------------------------KS---VVVTTGKRDQRFRI 415 (579)
Q Consensus 363 ~~~~~l~~~~~~a~~~g~~i~iH~~g~~~~~~~~~~~------------------------~~---~~~~~~~~~~~~~i 415 (579)
.+.+.+.++++.+++.+.++.+|+.....++..++.+ ++ ..... +.+.++
T Consensus 159 ~~~~~~~~~~~~a~~~~~~v~~H~e~~~~~~~~~~~~~~~g~~~~~~h~~~~~~~~~~~~~~~~~~~a~~~---g~~~~~ 235 (457)
T 1nfg_A 159 IDDVTLLKTLDKAVKTGSLVMVHAENGDAADYLRDKFVAEGKTAPIYHALSRPPRVEAEATARALALAEIV---NAPIYI 235 (457)
T ss_dssp CCHHHHHHHHHHHHHHTCEEEEECCCHHHHHHHHHHHHHTTCCSTHHHHHTSCHHHHHHHHHHHHHHHHHH---TCCEEE
T ss_pred CCHHHHHHHHHHHHhcCCEEEEeCCCHHHHHHHHHHHHhcCCcchhhccccCCHHHHHHHHHHHHHHHHHH---CCCEEE
Confidence 4678888899999999999999987544333332211 11 11112 335566
Q ss_pred eeccCCChhhHHHH---hhCC--cEEEecccccccchhHHHH---------hhChhhhhhhhhhHHHHHHCCCeeeecCC
Q 008063 416 EHAQHLASGTAARF---GDQG--IVASMQPQHLLDDADSARK---------KLGVDRAERESYLFQSLLANNALLALGSD 481 (579)
Q Consensus 416 ~H~~~~~~~~~~~~---~~~~--i~~~~~p~~~~~~~~~~~~---------~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD 481 (579)
.|+. +.+.++.+ ++.| +.+.++|++.....+.... ..++.+......++..+++.|+++++|||
T Consensus 236 ~H~~--~~~~~~~~~~~~~~G~~v~~~~~~h~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~~~G~~~~~gtD 313 (457)
T 1nfg_A 236 VHVT--CEESLEEVMRAKSRGVRALAETCTHYLYLTKEDLERPDFEGAKYVFTPPARAKKDHDVLWNALRNGVFETVSSD 313 (457)
T ss_dssp CCCC--SHHHHHHHHHHHHHTCCEEECEEGGGGTCCGGGGGCTTTGGGGGCCSSCCCCHHHHHHHHHHHHTTCCSCEECC
T ss_pred EeCC--cHHHHHHHHHHHHcCCeEEEEEchHHhEeCHHHhccccccCceeEEcCCCCCHHHHHHHHHHHhCCCeEEEecC
Confidence 6765 33333333 3445 4555566654322222110 11112222345678889999999999999
Q ss_pred CCCCCCC--------HHH---------H--HHHHHcccCCCCCCCCCCCCCCCHHHHHHHHcHHHHHhcccCCccccccC
Q 008063 482 WPVADIN--------PLC---------A--IRTAMKRIPPGWDNAWIPSERISLTDALIAHTLSAARACFLENDVGSLSP 542 (579)
Q Consensus 482 ~~~~~~~--------~~~---------~--~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~npA~~lgl~~~~G~I~~ 542 (579)
....... .+. + +...+... ...+++++++++++|.|||++||+++.+|+|++
T Consensus 314 ~~~~~~~~~k~~~~~~~~~~~~g~~g~e~~~~~~~~~~---------~~~~l~~~~~l~~~T~~~A~~lgl~~~~G~i~~ 384 (457)
T 1nfg_A 314 HCSWLFKGHKDRGRNDFRAIPNGAPGVEERLMMVYQGV---------NEGRISLTQFVELVATRPAKVFGMFPQKGTIAV 384 (457)
T ss_dssp BCCCCTTTTTTTTTTCGGGSCCCBCCTTTHHHHHHHHH---------HTTSSCHHHHHHHHTHHHHHHTTCTTTSSSCST
T ss_pred CCCCChHHhhhcccCCHhHCCCCcccHHHHHHHHHHHH---------HcCCCCHHHHHHHHhhhHHHHhCCCCCCcCcCC
Confidence 7533211 111 1 11111100 123599999999999999999999877999999
Q ss_pred CCcccEEEeCCCCCC--Chhhcc-------------CCeEEEEEECCEEeC
Q 008063 543 GKIADFVILSTSSWE--DFAAEV-------------SASIEATYVSGVQAY 578 (579)
Q Consensus 543 G~~ADlvvld~~~~~--~~~~~~-------------~~~v~~v~v~G~~v~ 578 (579)
||.|||||+|.++.. +..++. ..+|..||++|++||
T Consensus 385 G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~g~~~~~~v~~v~v~G~~v~ 435 (457)
T 1nfg_A 385 GSDADIVLWDPEAEMVIEQTAMHNAMDYSSYEGHKVKGVPKTVLLRGKVIV 435 (457)
T ss_dssp TSBCCEEEEEEEEEEECCGGGSCSSCSCCTTTTCEEEEEEEEEEETTEEEE
T ss_pred CCccCEEEEeCCCCEEecHHHccCCCCCCCccCCEecceEEEEEECCEEEE
Confidence 999999999988632 111111 238999999999986
|
| >2vm8_A Dihydropyrimidinase-related protein 2; neurogenesis, phosphoprotein, differentiation, CRMP, cytoplasm, TIM barrel, polymorphism, axonal pathfinding; 1.9A {Homo sapiens} PDB: 2gse_A 1kcx_A | Back alignment and structure |
|---|
Probab=99.97 E-value=6.1e-29 Score=267.91 Aligned_cols=214 Identities=14% Similarity=0.097 Sum_probs=126.4
Q ss_pred CCHHHHHHHHHHHHHCCCeEEEEecchHHHHHHH------------------------HHHHHHHHhcCCCCCCceEeec
Q 008063 363 MELESLLSMTMASDKSGLQVAIHAIGDRANDLVL------------------------DMYKSVVVTTGKRDQRFRIEHA 418 (579)
Q Consensus 363 ~~~~~l~~~~~~a~~~g~~i~iH~~g~~~~~~~~------------------------~~~~~~~~~~~~~~~~~~i~H~ 418 (579)
.+.+.+.++++.|++++.++.+|+.....+...+ ..++.........+.+.++.|+
T Consensus 187 ~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~g~~~hi~h~ 266 (501)
T 2vm8_A 187 LTDCQIYEVLSVIRDIGAIAQVHAENGDIIAEEQQRILDLGITGPEGHVLSRPEEVEAEAVNRAITIANQTNCPLYITKV 266 (501)
T ss_dssp CCHHHHHHHHHHHHHHTCEEEEECCCHHHHHHHHHHHHTTTCCSTHHHHHHSCHHHHHHHHHHHHHHHHHHTCCEEEEEE
T ss_pred CCHHHHHHHHHHHHHhCCEEEEEccChHHHHHHHHHHHhcCCCChhhccccCCHHHHHHHHHHHHHHHHHhCCcEEEEeC
Confidence 6789999999999999999999998643222111 1111111110012446788887
Q ss_pred cCCC-hhhHHHHhhCCcEEE--ecccccccchhHH-------H---HhhChhhhh-hhhhhHHHHHHCCCeeeecCCCCC
Q 008063 419 QHLA-SGTAARFGDQGIVAS--MQPQHLLDDADSA-------R---KKLGVDRAE-RESYLFQSLLANNALLALGSDWPV 484 (579)
Q Consensus 419 ~~~~-~~~~~~~~~~~i~~~--~~p~~~~~~~~~~-------~---~~l~~~~~~-~~~~~l~~l~~~Gi~v~~gsD~~~ 484 (579)
.... .+.++..++.|+.+. .+|.+...+...+ . +..++.|.+ ....++..+++.|+.+++|||.+.
T Consensus 267 ~~~~~~~~i~~~~~~G~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~pp~r~~~~~~~~l~~~l~~G~~~~~gtD~~~ 346 (501)
T 2vm8_A 267 MSKSSAEVIAQARKKGTVVYGEPITASLGTDGSHYWSKNWAKAAAFVTSPPLSPDPTTPDFLNSLLSCGDLQVTGSAHCT 346 (501)
T ss_dssp CCHHHHHHHHHHHHTTCCEEEEEBHHHHHCCGGGGGCSSHHHHHHTCCSSCCCSCTTHHHHHHHHHHHTSSCCCBCCBCC
T ss_pred CcHHHHHHHHHHHhCCCcEEEEEChhHhhcChhhhcccccccCceEEECCCCCCCcchHHHHHHHHhcCceEEEEecCCC
Confidence 6322 233445577786542 2222221111110 0 011222221 235567789999999999999643
Q ss_pred CCCCHHHHHHH--HHcccCCC---CCC-------CCCCCCCCCHHHHHHHHcHHHHHhcccCCccccccCCCcccEEEeC
Q 008063 485 ADINPLCAIRT--AMKRIPPG---WDN-------AWIPSERISLTDALIAHTLSAARACFLENDVGSLSPGKIADFVILS 552 (579)
Q Consensus 485 ~~~~~~~~~~~--~~~~~~~~---~~~-------~~~~~~~ls~~~al~~~T~npA~~lgl~~~~G~I~~G~~ADlvvld 552 (579)
.. ....+.. .......+ .+. .+....+++++++++++|.|||++||+++.+|+|++||.|||||+|
T Consensus 347 ~~--~~~~~~~~~~~~~~~~G~~g~e~~l~~~~~~~~~~~~l~~~~~l~~~T~~~A~~lgl~~~~G~l~~G~~ADlvv~d 424 (501)
T 2vm8_A 347 FN--TAQKAVGKDNFTLIPEGTNGTEERMSVIWDKAVVTGKMDENQFVAVTSTNAAKVFNLYPRKGRIAVGSDADLVIWD 424 (501)
T ss_dssp CC--HHHHGGGSSCGGGSCCCBCCTTTHHHHHHHHHTTTTSSCHHHHHHHHTHHHHHHHTCTTTSSCCCTTSBCCEEEEE
T ss_pred CC--hhhhhcccCChhhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHhHhHHHHhCCCCCCCccCCCCcCCEEEEc
Confidence 22 1111100 00000000 000 0113456999999999999999999998779999999999999999
Q ss_pred CCCCC--Chhhc-------------cCCeEEEEEECCEEeC
Q 008063 553 TSSWE--DFAAE-------------VSASIEATYVSGVQAY 578 (579)
Q Consensus 553 ~~~~~--~~~~~-------------~~~~v~~v~v~G~~v~ 578 (579)
.++.. +..++ ....|..||++|++||
T Consensus 425 ~~~~~~~~~~~~~s~~~~~~~~g~~~~~~v~~v~v~G~~v~ 465 (501)
T 2vm8_A 425 PDSVKTISAKTHNSSLEYNIFEGMECRGSPLVVISQGKIVL 465 (501)
T ss_dssp EEEEEECCTTTSSSSCSCCTTTTCEEEEEEEEEEETTEEEE
T ss_pred CCCCeeeccccccccccCCCccCcEeCceEEEEEECCEEEE
Confidence 88632 11111 1347899999999986
|
| >3mkv_A Putative amidohydrolase; sargasso SEA, structural genomics, protein structure initiat NEW YORK structural genomix research consortium, nysgxrc; HET: KCX; 2.40A {Undefined} | Back alignment and structure |
|---|
Probab=99.96 E-value=8e-29 Score=256.64 Aligned_cols=191 Identities=14% Similarity=0.128 Sum_probs=121.6
Q ss_pred CCCHHHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhcCCCCCCceEeeccCCChhhHHHHhhCCcEEEeccc
Q 008063 362 VMELESLLSMTMASDKSGLQVAIHAIGDRANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLASGTAARFGDQGIVASMQPQ 441 (579)
Q Consensus 362 ~~~~~~l~~~~~~a~~~g~~i~iH~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~H~~~~~~~~~~~~~~~~i~~~~~p~ 441 (579)
..+.......+..+.+.+.....+............ .+ .....+...............+......+.
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (426)
T 3mkv_A 211 GYSEDEIRAIVAEAQGRGTYVLAHAYTPAAIARAVR--------CG----VRTIEHGNLIDDETARLVAEHGAYVVPTLV 278 (426)
T ss_dssp CSCHHHHHHHHHHHHTTTCCEEEEECSHHHHHHHHH--------TT----CCEEEECTTCCHHHHHHHHHHTCEEECCHH
T ss_pred hhhHHHHHHHHHHHHhcccceeehhhhhhhHHHHHh--------hc----cccccccccccchhhhhhhhcCcccccccc
Confidence 356667777777777788777777654332222111 11 223444444444455555555554444332
Q ss_pred ccccch---------hHHHHhhChhhhhhhhhhHHHHHHCCCeeeecCCCCCCCCCHHHHHHHHHcccCCCCCCCCCCCC
Q 008063 442 HLLDDA---------DSARKKLGVDRAERESYLFQSLLANNALLALGSDWPVADINPLCAIRTAMKRIPPGWDNAWIPSE 512 (579)
Q Consensus 442 ~~~~~~---------~~~~~~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 512 (579)
...... ............ ....+...+.+.|+.+.+++|....+......+...+. .
T Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~g~d~~~~~~~~~~~~~~~~~-------------~ 344 (426)
T 3mkv_A 279 TYDALASEGEKYGLPPESIAKIADVHG-AGLHSIEIMKRAGVKMGFGTDLLGEAQRLQSDEFRILA-------------E 344 (426)
T ss_dssp HHHHHHHHTTTTTCCHHHHTTHHHHHT-THHHHHHHHHHHTCCBCCCCCCCGGGGGGTTHHHHHHH-------------T
T ss_pred chhhhhhhhhhcccccccccccccccc-ccchhhHHhhhcCceeeeccCCcccccchHHHHHHHHH-------------h
Confidence 211000 000000001111 44556778889999999999987655443333333332 2
Q ss_pred CCCHHHHHHHHcHHHHHhcccCCccccccCCCcccEEEeCCCCCCChhhcc--CCeEEEEEECCEEeC
Q 008063 513 RISLTDALIAHTLSAARACFLENDVGSLSPGKIADFVILSTSSWEDFAAEV--SASIEATYVSGVQAY 578 (579)
Q Consensus 513 ~ls~~~al~~~T~npA~~lgl~~~~G~I~~G~~ADlvvld~~~~~~~~~~~--~~~v~~v~v~G~~v~ 578 (579)
++|++|||+++|.|||++||+++++|+|+|||.|||||||.||++++..+. ..+|..||++||+|.
T Consensus 345 gls~~eal~~~T~~pA~~lgl~~~~Gsi~~G~~ADlvvlD~dPl~di~~~~~~~~~v~~Vi~~G~vv~ 412 (426)
T 3mkv_A 345 VLSPAEVIASATIVSAEVLGMQDKLGRIVPGAHADVLVVDGNPLKSVDCLLGQGEHIPLVMKDGRLFV 412 (426)
T ss_dssp TSCHHHHHHHTTHHHHHHTTCBTTBSSCCTTSBCCEEEESSCTTTCSTTTCSSSTTCCEEEETTEEEE
T ss_pred CCCHHHHHHHHHHHHHHHhCCCCCcceeCCCCcceEEEECCChHHhHHHHhCCCCCccEEEECCEEEE
Confidence 589999999999999999999998999999999999999999998665442 447999999999874
|
| >2ics_A Adenine deaminase; TIM barrel, binuclear zinc, adenine complex, amidohydrolase, structural genomics, PSI, protein structure initiative; HET: KCX ADE; 2.30A {Enterococcus faecalis} SCOP: b.92.1.8 c.1.9.14 | Back alignment and structure |
|---|
Probab=99.96 E-value=7.8e-29 Score=257.28 Aligned_cols=177 Identities=15% Similarity=0.090 Sum_probs=125.8
Q ss_pred CCHHHHHHHHHHHHH-CCCeEEEEecc-hHHHHHHHHHHHHHHHhcCCCCCCceEeeccCCCh------------hhHHH
Q 008063 363 MELESLLSMTMASDK-SGLQVAIHAIG-DRANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLAS------------GTAAR 428 (579)
Q Consensus 363 ~~~~~l~~~~~~a~~-~g~~i~iH~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~i~H~~~~~~------------~~~~~ 428 (579)
++.+.+.+.++.|++ .|+++.+|+.. ....++..+.++. + ..+.|+..... +++.+
T Consensus 165 ~~~~~~~~~~~~a~~~~g~~v~~H~~~~~~~~~~~~~~~~~-----g-----~~~~H~~~~~~~~~~~~s~~~~~~~~~~ 234 (379)
T 2ics_A 165 NGITPLELAKQIQQENQEIPLMVHIGSAPPHLDEILALMEK-----G-----DVLTHCFNGKENGILDQATDKIKDFAWQ 234 (379)
T ss_dssp CTTHHHHHHHHHHHTTTTCCEEEEECSSSSCHHHHHHHCCT-----T-----CEEESTTCCSTTSSEETTTTEECHHHHH
T ss_pred chHHHHHHHHHHHHHhcCCeEEEeCCCCcchHHHHHHHhhc-----C-----CeeeeccCCCccchhhccCHHHHHHHHH
Confidence 456788899999999 99999999964 2223333332211 1 36677765433 78888
Q ss_pred HhhCCcEEEecccccccchhHHHHhhChhhhhhhhhhHHHHHHCC-CeeeecCCCCCC-----C-CCHHHHHHHHHcccC
Q 008063 429 FGDQGIVASMQPQHLLDDADSARKKLGVDRAERESYLFQSLLANN-ALLALGSDWPVA-----D-INPLCAIRTAMKRIP 501 (579)
Q Consensus 429 ~~~~~i~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~~G-i~v~~gsD~~~~-----~-~~~~~~~~~~~~~~~ 501 (579)
+++.|+.++++|.+... ...+++.+++.| ++++++||.+.. + ......+...+.
T Consensus 235 ~~~~g~~~~~~p~~~~~----------------~~~~~~~~~~~G~~~~~l~TD~~~~~~~~~~~~~~~~~l~~~~~--- 295 (379)
T 2ics_A 235 AYNKGVVFDIGHGTDSF----------------NFHVAETALREGMKAASISTDIYIRNRENGPVYDLATTMEKLRV--- 295 (379)
T ss_dssp HHHTTCEEECCCTTTSC----------------CHHHHHHHHHTTCCCSBCCCCBCHHHHHSSSCCCHHHHHHHHHH---
T ss_pred HHHcCCEEEecCCCCCc----------------CHHHHHHHHHcCCCcceEeccCcccCCCCCcHhHHHHHHHHHHH---
Confidence 88999999999875431 123567889999 889999997411 1 222333332221
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHcHHHHHhcccCCccccccCCCcccEEEeCCCCCC----Chh-hccCC----eEEEEEE
Q 008063 502 PGWDNAWIPSERISLTDALIAHTLSAARACFLENDVGSLSPGKIADFVILSTSSWE----DFA-AEVSA----SIEATYV 572 (579)
Q Consensus 502 ~~~~~~~~~~~~ls~~~al~~~T~npA~~lgl~~~~G~I~~G~~ADlvvld~~~~~----~~~-~~~~~----~v~~v~v 572 (579)
.+++++++++++|.|||++||+++ +|+|+|||.|||||+|.+.+. ++. ..... +|..||+
T Consensus 296 ----------~~ls~~~~~~~~T~n~A~~lgl~~-~G~l~~G~~ADlvv~d~~~~~~~~~~~~g~~~~~~~~~~v~~t~v 364 (379)
T 2ics_A 296 ----------VGYDWPEIIEKVTKAPAENFHLTQ-KGTLEIGKDADLTIFTIQAEEKTLTDSNGLTRVAKEQIRPIKTII 364 (379)
T ss_dssp ----------HTCCHHHHHHTTTHHHHHHTTCTT-SSSCCTTSBCCEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEEEE
T ss_pred ----------cCCCHHHHHHHHHHHHHHHhCCCC-CcCCCCCCccCEEEEecccccceeecCCCCEEEeeeeeeeEEEEE
Confidence 259999999999999999999987 899999999999999864431 111 11133 8999999
Q ss_pred CCEEeCC
Q 008063 573 SGVQAYP 579 (579)
Q Consensus 573 ~G~~v~~ 579 (579)
+|++||.
T Consensus 365 ~G~~v~~ 371 (379)
T 2ics_A 365 GGQIYDN 371 (379)
T ss_dssp TTEEEEC
T ss_pred CCEEEec
Confidence 9999974
|
| >3nqb_A Adenine deaminase 2; PSI-II, structural genomics, protein structure initiative, N SGX research center for structural genomics, nysgxrc; 2.21A {Agrobacterium tumefaciens} PDB: 3t81_A 3t8l_A | Back alignment and structure |
|---|
Probab=99.95 E-value=2.2e-27 Score=258.92 Aligned_cols=322 Identities=20% Similarity=0.200 Sum_probs=200.8
Q ss_pred CCCccEEEEcCeEEeCCCCCCeeeEEEEECCEEEEecChHHHHhhccCCCeEEeCCCCeeecccccccccccccCccccc
Q 008063 42 NLEADLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHFIPGGLQMAR 121 (579)
Q Consensus 42 ~~~~~~likn~~v~~~~~~~~~~~~v~I~~GkI~~Ig~~~~~~~~~~~~~~viD~~g~~V~PG~ID~H~H~~~~~~~~~~ 121 (579)
..+++++|+|++|+++.......++|+|+||||++|++... . +++.++||++|++|+|||||+|+|+..+..
T Consensus 32 ~~~~dlli~n~~ivd~~~~~~~~~dI~I~~G~I~~Vg~~~~--~--~~~~~vID~~G~~v~PG~ID~H~Hl~~~~~---- 103 (608)
T 3nqb_A 32 DQRFDVLITGGTLVDVVTGELRPADIGIVGALIASVHEPAS--R--RDAAQVIDAGGAYVSPGLIDTHMHIESSMI---- 103 (608)
T ss_dssp SSCEEEEEESCEEECTTTCCEEECEEEEETTEEEEEECTTS--C--CCEEEEEECTTSEEEECEEEEEECGGGGTS----
T ss_pred CCCCCEEEECeEEEECCCCeEEeeEEEEECCEEEEecCCCC--C--CCCCeEEeCCCCEEecCeEecccCcccccC----
Confidence 45678999999999987666677899999999999997541 1 246789999999999999999999853210
Q ss_pred cccCCCCCHHHHHHHHHHHHHcCCCCCeEEEeCCCCCCCCCCCCChHHhhhhCCCCeEEEEeCCCchhhhcHHHHHHcCC
Q 008063 122 VKLRGVSHKDEFVRRVKEAVKNSKKGSWILGGGWNNDLWGGDLPMASWIDDITPHNPVWLSRMDGHMGLANSVALQLVGI 201 (579)
Q Consensus 122 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~p~~~~ld~~~~~~p~~~~~~~~~~~~~n~~~~~~~g~ 201 (579)
T Consensus 104 -------------------------------------------------------------------------------- 103 (608)
T 3nqb_A 104 -------------------------------------------------------------------------------- 103 (608)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCeEEeCCCCCcCEEEhHhHHHHhcccCCCCCHHHHHHHHHHHHHHHHhcCccEEEeCCcCCCCCccccchH
Q 008063 202 TNLSEDPNGGTIMKTSSGEPTGLLIDAAMKLILPWIPEVSVDERREALLRASNLALSRGVTTVVDFGRYYPGESVQLSWE 281 (579)
Q Consensus 202 ~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Git~v~~~~~~~~~~~~~~~~~ 281 (579)
......+.++..|+|++.+.....+ +..
T Consensus 104 ----------------------------------------------~~~~~~~~al~~GvTtvv~~p~~~~------~v~ 131 (608)
T 3nqb_A 104 ----------------------------------------------TPAAYAAAVVARGVTTIVWDPHEFG------NVH 131 (608)
T ss_dssp ----------------------------------------------CHHHHHHHHHTTTEEEEEECCHHHH------HHH
T ss_pred ----------------------------------------------CHHHHHHHHHhCCeEEEEcCCcccc------ccC
Confidence 0012356788999999997532100 111
Q ss_pred HHHHHHHHHhhcCCCeeEEEEcc----Cc-cc---------hhhHHHHHHhcCCCCCCceEEceEEEEEcCccCCCcccc
Q 008063 282 DFADVYQWASYSEKMKIRVCLFF----PL-ET---------WSSLADLINKTGHVLSDWVYLGGVKAFADGSLGSNSALF 347 (579)
Q Consensus 282 ~~~~~~~~~~~~~~~~i~v~~~~----~~-~~---------~~~~~~~~~~~~~~~~~~~~~~g~k~~~dg~~~~~~~~~ 347 (579)
........+......+++++... +. .. .++..++... -...+++.+.+.
T Consensus 132 g~~~~~~~l~~a~~~~~~v~~~~p~~~P~~~~~~~~g~~~~~~el~~l~~~--------~~v~glgE~~~~--------- 194 (608)
T 3nqb_A 132 GVDGVRWAAKAIENLPLRAILLAPSCVPSAPGLERGGADFDAAILADLLSW--------PEIGGIAEIMNM--------- 194 (608)
T ss_dssp THHHHHHHHHHHTTCSSEEEEEECCCSSSSTTSCCCSCCCCHHHHHHHHTS--------TTEEEEEEECCH---------
T ss_pred CHHHHHHHHHHhhhcCcEEEEeccccCCCCCccccCcccCCHHHHHHHHhc--------cCcceeeEeecc---------
Confidence 11112222222334455555433 11 00 1112222111 012223222110
Q ss_pred cCCCCCCCCCCcccCCCHHHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhcCCCCCCceEeeccCCChhhHH
Q 008063 348 HEPYADEPHNYGLQVMELESLLSMTMASDKSGLQVAIHAIGDRANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLASGTAA 427 (579)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~i~iH~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~H~~~~~~~~~~ 427 (579)
.......+.+.+.++.|++.|.++.+|+.+... ..++.+.. .+ ....|+....++..+
T Consensus 195 -----------~~v~~~d~~l~~~l~~A~~~g~pV~~Ha~~~~~--~~L~~~~~----aG-----v~~~H~~~~~eea~e 252 (608)
T 3nqb_A 195 -----------RGVIERDPRMSGIVQAGLAAEKLVCGHARGLKN--ADLNAFMA----AG-----VSSDHELVSGEDLMA 252 (608)
T ss_dssp -----------HHHHTTCHHHHHHHHHHHHHTCEEEECCTTCCH--HHHHHHHH----TT-----CCEECCCCSHHHHHH
T ss_pred -----------CCcCCCcHHHHHHHHHHHHcCCEEEEcCCCCCH--HHHHHHHH----cC-----CCeeeccCCHHHHHH
Confidence 001124577889999999999999999975432 22222222 22 234898887776666
Q ss_pred HHhhCCcEEEecccccccchhHHHHhhChhhhhhhhhhHHHHHHCCCeeeecCCCCCCC-----CCHHHHHHHHHcccCC
Q 008063 428 RFGDQGIVASMQPQHLLDDADSARKKLGVDRAERESYLFQSLLANNALLALGSDWPVAD-----INPLCAIRTAMKRIPP 502 (579)
Q Consensus 428 ~~~~~~i~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD~~~~~-----~~~~~~~~~~~~~~~~ 502 (579)
+++ .|..+.+. .+...... .....++.+...|++++++||..... .+....++.++.
T Consensus 253 ~l~-~G~~i~i~-gs~~~~~~------------~l~~~i~~~~~~g~~v~lgTD~~~p~~~~~~g~l~~~v~~~~~---- 314 (608)
T 3nqb_A 253 KLR-AGLTIELR-GSHDHLLP------------EFVAALNTLGHLPQTVTLCTDDVFPDDLLQGGGLDDVVRRLVR---- 314 (608)
T ss_dssp HHH-TTCEEEEE-SSSGGGHH------------HHHHHHHHHTSCCTTEEEECBSCCHHHHHHTCSHHHHHHHHHH----
T ss_pred HHH-CCCEEEEe-ccccccHH------------HHHHHHHhHhhcCceEEEecCCCCCcchhhhcchHHHHHHHHH----
Confidence 665 68888776 43321111 11111121223899999999963110 123334444432
Q ss_pred CCCCCCCCCCCCCHHHHHHHHcHHHHHhcccCCccccccCCCcccEEEeCCCCCCChhhccCCeEEEEEECCEEeC
Q 008063 503 GWDNAWIPSERISLTDALIAHTLSAARACFLENDVGSLSPGKIADFVILSTSSWEDFAAEVSASIEATYVSGVQAY 578 (579)
Q Consensus 503 ~~~~~~~~~~~ls~~~al~~~T~npA~~lgl~~~~G~I~~G~~ADlvvld~~~~~~~~~~~~~~v~~v~v~G~~v~ 578 (579)
.|++++++++++|.|||+++|+++ +|+|+||+.||||++|. + + ..++..||++|++|+
T Consensus 315 ---------~Gls~~eal~~aT~n~A~~lgl~~-~G~i~~G~~ADlvv~d~--l---~---~~~v~~v~~~G~~v~ 372 (608)
T 3nqb_A 315 ---------YGLKPEWALRAATLNAAQRLGRSD-LGLIAAGRRADIVVFED--L---N---GFSARHVLASGRAVA 372 (608)
T ss_dssp ---------TTCCHHHHHHHHTHHHHHHHTCTT-SSCCSTTSBCCEEEESC--T---T---TCCEEEEEETTEEEE
T ss_pred ---------cCCCHHHHHHHHHHHHHHHcCCCC-CcCcCCCCCccEEEECC--C---C---CCcceEEEECCEEEE
Confidence 269999999999999999999964 89999999999999995 1 1 337999999999986
|
| >4gy7_A Urease; JACK bean, hydrolase, ME binding, nickel; HET: CME KCX; 1.49A {Canavalia ensiformis} PDB: 3la4_A* 4h9m_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1e-27 Score=267.32 Aligned_cols=107 Identities=18% Similarity=0.130 Sum_probs=76.7
Q ss_pred hhHHHHHHCCCeeeecCCCCCCCC--CH----HHHHHHHHcccCCCCCCCCCCCCCCCHHHHHHHHcHHHHHhcccCCcc
Q 008063 464 YLFQSLLANNALLALGSDWPVADI--NP----LCAIRTAMKRIPPGWDNAWIPSERISLTDALIAHTLSAARACFLENDV 537 (579)
Q Consensus 464 ~~l~~l~~~Gi~v~~gsD~~~~~~--~~----~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~npA~~lgl~~~~ 537 (579)
.....+.+.|+..+++||...... .. +........... ..........+++++++|+++|+|||+.||+++++
T Consensus 616 a~~~ll~dlGvi~~isSD~~p~~~~~e~~~~~~~~a~~~~~~~g-~~~~e~~~~~~Lsl~eAIr~aTiNPAraLGLddr~ 694 (840)
T 4gy7_A 616 AAEDVLNDIGAISIISSDSQAMGRVGEVISRTWQTADKMKAQTG-PLKCDSSDNDNFRIRRYIAKYTINPAIANGFSQYV 694 (840)
T ss_dssp HHHHHHHHTTSSCEEECCBTTTBCGGGHHHHHHHHHHHHHHHHC-SCTTSCSSCCHHHHHHHHHTTTHHHHHHHTCTTTS
T ss_pred hHHHHHHhCCCeEEEeccccccccccccchhhhcccccchhhcc-cchhhhhhcCCCCHHHHHHHHHHHHHHHhCCCCCc
Confidence 345667789999999999754431 11 111111111100 01122234567999999999999999999999999
Q ss_pred ccccCCCcccEEEeCCCCCCChhhccCCeEEEEEECCEEeC
Q 008063 538 GSLSPGKIADFVILSTSSWEDFAAEVSASIEATYVSGVQAY 578 (579)
Q Consensus 538 G~I~~G~~ADlvvld~~~~~~~~~~~~~~v~~v~v~G~~v~ 578 (579)
|+|+|||.|||||||...| ..++..|+++|++||
T Consensus 695 GSIEpGK~ADLVLfDPa~F-------GvKPe~Vik~G~Iv~ 728 (840)
T 4gy7_A 695 GSVEVGKLADLVMWKPSFF-------GTKPEMVIKGGMVAW 728 (840)
T ss_dssp SSSCTTSBCCEEEECGGGT-------TTCCSEEEETTEEEE
T ss_pred cccCCCCcceEEEECchHc-------CCCCeEEEECCEEEE
Confidence 9999999999999985443 458899999999997
|
| >1rk6_A D-aminoacylase; TIM barrel, beta barrel, insertion, hydrolase; 1.43A {Alcaligenes faecalis} SCOP: b.92.1.6 b.92.1.6 c.1.9.11 PDB: 1rjp_A 1v51_A 1rjq_A 1rjr_A 1rk5_A 1v4y_A 1m7j_A | Back alignment and structure |
|---|
Probab=99.95 E-value=2e-27 Score=255.60 Aligned_cols=70 Identities=30% Similarity=0.521 Sum_probs=56.1
Q ss_pred ccCCCccEEEEcCeEEeCCCCCCeeeEEEEECCEEEEecChHHHHhhccCCCeEEeCCCCeeecccccccccccc
Q 008063 40 TTNLEADLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHFIP 114 (579)
Q Consensus 40 ~~~~~~~~likn~~v~~~~~~~~~~~~v~I~~GkI~~Ig~~~~~~~~~~~~~~viD~~g~~V~PG~ID~H~H~~~ 114 (579)
.+..+|+++|+|++|+++.+.....++|+|+||||++|++..+ +.+.++||++|++|+|||||+|+|+..
T Consensus 16 ~~~~~~~~~i~~~~v~~~~~~~~~~~~v~i~~g~I~~i~~~~~-----~~~~~~iD~~g~~v~PG~iD~H~H~~~ 85 (496)
T 1rk6_A 16 PDATPFDYILSGGTVIDGTNAPGRLADVGVRGDRIAAVGDLSA-----SSARRRIDVAGKVVSPGFIDSHTHDDN 85 (496)
T ss_dssp ----CBSEEEESSEECCSSSCCCEECEEEEETTEEEEEECCTT-----SCBSCEEECTTCEEEECEEESSCCCTT
T ss_pred CCCCcccEEEECCEEEeCCCCceeccEEEEECCEEEEecCCCC-----CCCCeEEeCCCCEEecCEeeeeecCCc
Confidence 3455678999999999987655577899999999999987532 244679999999999999999999854
|
| >2ftw_A Dihydropyrimidine amidohydrolase; (beta-alpha)8-barrel, beta-sandwich; HET: KCX; 2.05A {Dictyostelium discoideum} SCOP: b.92.1.3 c.1.9.6 | Back alignment and structure |
|---|
Probab=99.95 E-value=3.4e-27 Score=254.99 Aligned_cols=214 Identities=15% Similarity=0.075 Sum_probs=123.7
Q ss_pred CCHHHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHH------------------------HHHhcCCCCCCceEeec
Q 008063 363 MELESLLSMTMASDKSGLQVAIHAIGDRANDLVLDMYKS------------------------VVVTTGKRDQRFRIEHA 418 (579)
Q Consensus 363 ~~~~~l~~~~~~a~~~g~~i~iH~~g~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~i~H~ 418 (579)
++.+.+.++++.|+++|.++.+|+.....+...++.+.+ ........+.+.++.|+
T Consensus 169 ~~~e~l~~~~~~A~~~g~~v~vH~e~~~~~~~~~~~l~~~G~~~~~~h~~~~~~~~e~~a~~~~~~la~~~~~p~hi~h~ 248 (521)
T 2ftw_A 169 VTDQEMYHIFKRCKELGAIAQVHAENGDMVFEGQKKMLEMGITGPEGHELSRPEALEAEATNRAIVIADSVCTPVYIVHV 248 (521)
T ss_dssp CCHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHHHHHHHTTCCSTHHHHHHSCTHHHHHHHHHHHHHHHHHTCCEEECSC
T ss_pred CCHHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHHHHcCCCChhhccccCcHHHHHHHHHHHHHHHHHhCCCEEEEec
Confidence 688999999999999999999999754322222221110 00000001234556665
Q ss_pred cC-CChhhHHHHhhCCcEE--EecccccccchhHH----------HHhhChhhh-hhhhhhHHHHHHCCCeeeecCCCCC
Q 008063 419 QH-LASGTAARFGDQGIVA--SMQPQHLLDDADSA----------RKKLGVDRA-ERESYLFQSLLANNALLALGSDWPV 484 (579)
Q Consensus 419 ~~-~~~~~~~~~~~~~i~~--~~~p~~~~~~~~~~----------~~~l~~~~~-~~~~~~l~~l~~~Gi~v~~gsD~~~ 484 (579)
.. ...+.++++++.|+.+ ..+|.+...+...+ ....++.|. .+....+..+++.|...++|||.+.
T Consensus 249 ss~~~~~~i~~~r~~G~~v~~e~~~~~L~~d~~~~~~~~~~~~~~~~~~Pplr~~~~~~~~l~~~l~~g~~~~~gsD~~~ 328 (521)
T 2ftw_A 249 QSIGAADVICKHRKEGVRVYGEPIAAGLGVDGSHMWNHDWRHAAAFVMGPPIRPDPRTKGVLMDYLARGDLDCVGTDNCT 328 (521)
T ss_dssp CCHHHHHHHHHHHHTTCCEEECCBHHHHHCCGGGGGCSSHHHHHTTCCSSCCCCCTTHHHHHHHHHHHTSSCCCBCCBCC
T ss_pred CcHHHHHHHHHHHHcCCeEEEEEcchhhccCHHHhcCCCcccCcceEEcCCCCCChhhHHHHHHHhcCCCEEEEEeCCCC
Confidence 42 1123455677777653 33444332222111 001122221 1234456678899999999999643
Q ss_pred CCCCHHHHHH--HHHcccCC--CCCC--------CCCCCCCCCHHHHHHHHcHHHHHhcccCCccccccCCCcccEEEeC
Q 008063 485 ADINPLCAIR--TAMKRIPP--GWDN--------AWIPSERISLTDALIAHTLSAARACFLENDVGSLSPGKIADFVILS 552 (579)
Q Consensus 485 ~~~~~~~~~~--~~~~~~~~--~~~~--------~~~~~~~ls~~~al~~~T~npA~~lgl~~~~G~I~~G~~ADlvvld 552 (579)
.. ..+... ....+... .+.. .+....+++++++++++|.|||+++|+++++|+|++|+.|||||||
T Consensus 329 ~~--~~~k~~~~~~~~~~p~G~~G~e~~l~~~~~~~v~~~~l~~~~~~~~~t~~~A~~~gl~~~~G~i~~G~~ADlvv~d 406 (521)
T 2ftw_A 329 FC--ADQKAMGKDDFTKIPNGVNGVEDRMSIVWENGVNTGKLTWCQFVRATSSERARIFNIYPRKGRIDVGCDGDIVIWD 406 (521)
T ss_dssp CC--HHHHGGGTTCGGGSCCCBCCTTTHHHHHHHHHTTTTSSCHHHHHHHHTHHHHHHTTCTTTSSCCSTTSBCCEEEEE
T ss_pred CC--HHHhhcccCChhhCCCCCccHHHHHHHHHHHHHhcCCCCHHHHHHHhChhHHHHhCCCCCCCCcCCCCcCCEEEEe
Confidence 21 110000 00000000 0000 0113456999999999999999999998779999999999999999
Q ss_pred CCCCC--Chhhc-------------cCCeEEEEEECCEEeC
Q 008063 553 TSSWE--DFAAE-------------VSASIEATYVSGVQAY 578 (579)
Q Consensus 553 ~~~~~--~~~~~-------------~~~~v~~v~v~G~~v~ 578 (579)
.++.. ....+ ....|..||++|++||
T Consensus 407 ~~~~~~i~~~~~~~~~~~~p~~g~~~~g~v~~v~v~G~~v~ 447 (521)
T 2ftw_A 407 PNQSKTISKDTHHHAVDFNIFEGIKVTGIAVTTIVAGNIVW 447 (521)
T ss_dssp EEEEEECCTTTCCCSSSCCTTTTCEEEEEEEEEEETTEEEE
T ss_pred CCCCEEEChHHccccCCCCCcCCCEeeeeEEEEEECCEEEE
Confidence 87521 11111 1347899999999987
|
| >3gip_A N-acyl-D-glutamate deacylase; amidohydrolase family, hydrolase; 1.50A {Bordetella bronchiseptica} PDB: 3giq_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=5.1e-27 Score=251.00 Aligned_cols=204 Identities=16% Similarity=0.156 Sum_probs=121.8
Q ss_pred CCHHHHHHHHHHHHHCCCeEEEEecch--HHHHHHHHHHHHHHHhcCCCCCCceEeeccCCC-------hh---hHHHHh
Q 008063 363 MELESLLSMTMASDKSGLQVAIHAIGD--RANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLA-------SG---TAARFG 430 (579)
Q Consensus 363 ~~~~~l~~~~~~a~~~g~~i~iH~~g~--~~~~~~~~~~~~~~~~~~~~~~~~~i~H~~~~~-------~~---~~~~~~ 430 (579)
.+.+++.++++.++++|.++.+|+... .....+.+.+.. .... +.+.++.|+.... .+ .++..+
T Consensus 196 ~~~~el~~~~~~a~~~g~~v~~H~~~~~~~~~~a~~e~i~l-a~~~---g~~v~i~H~s~~~~~~~~~~~~~l~~i~~a~ 271 (480)
T 3gip_A 196 AQAAELEGLARVAAERRRLHTSHIRNEADGVEAAVEEVLAI-GRGT---GCATVVSHHKCMMPQNWGRSRATLANIDRAR 271 (480)
T ss_dssp CCHHHHHHHHHHHHHTTCEEEEECSCSSTTHHHHHHHHHHH-HHHH---CCEEEETTCCCCSGGGTTTHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCEEEEEecCccccHHHHHHHHHHH-HHHh---CCCEEEEEEeccCccchhhHHHHHHHHHHHH
Confidence 578899999999999999999999742 222222222221 1222 3467788876432 33 334445
Q ss_pred hCC--cEEEecccccccchhHHHH------hh-------Chhhh-----------hhhhh------------------hH
Q 008063 431 DQG--IVASMQPQHLLDDADSARK------KL-------GVDRA-----------ERESY------------------LF 466 (579)
Q Consensus 431 ~~~--i~~~~~p~~~~~~~~~~~~------~l-------~~~~~-----------~~~~~------------------~l 466 (579)
+.| +.+.++|.+.......... .. ++.+. ..... .+
T Consensus 272 ~~G~~Vt~e~~p~~~~~t~~~l~~~~~~~~~~~~~~~~~p~~~g~~~~~ia~~~~~~~~~a~~~~l~~g~i~~~~~~~~~ 351 (480)
T 3gip_A 272 EQGVEVALDIYPYPGSSTILIPERAETIDDIRITWSTPHPECSGEYLADIAARWGCDKTTAARRLAPAGAIYFAMDEDEV 351 (480)
T ss_dssp HTTCCEEEEECSCSCEEEECCGGGTTTSSCCEEEEESSCGGGTTCBHHHHHHHHTSCHHHHHHHHCSEEEEECCCCHHHH
T ss_pred HcCCceEEEeeccccCcchhhhcCHHHHHHHhhccccCCCccCCCcHHHHHHHcCCCHHHHHHHhccCCeEEEeCCHHHH
Confidence 554 6777888776432100000 00 00000 00000 11
Q ss_pred HHHHHCCCeeeecCCCCCCCCC----HHHHHHHHHcccCCCCCCCCCCCCCCCHHHHHHHHcHHHHHhcccCCccccccC
Q 008063 467 QSLLANNALLALGSDWPVADIN----PLCAIRTAMKRIPPGWDNAWIPSERISLTDALIAHTLSAARACFLENDVGSLSP 542 (579)
Q Consensus 467 ~~l~~~Gi~v~~gsD~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~npA~~lgl~~~~G~I~~ 542 (579)
..+.+ +-...+|||+...... .+..+...+.... ....+++++++++++|.|||+.+|+++ +|+|++
T Consensus 352 ~~~~~-~~~~~~gsD~~~~~~~~~~~~~~~~~~~~~~~v-------~~~~~~~~~~~~~~~t~~~a~~~g~~~-~G~l~~ 422 (480)
T 3gip_A 352 KRIFQ-HPCCMVGSDGLPNDARPHPRLWGSFTRVLGRYV-------REARLMTLEQAVARMTALPARVFGFAE-RGVLQP 422 (480)
T ss_dssp HHHHH-STTEEECCCCCTTCSSCCTHHHHHHHHHHHCCC-------CCTCSSCHHHHHHHHTHHHHHHHTCTT-CSSCST
T ss_pred HHHHc-CCCeEEecCCcccCCCCChhhhhhHHHHHHHHh-------hhcCCCCHHHHHHHHHHHHHHHcCCCC-CCccCC
Confidence 22333 3446778997654322 2333333332211 124569999999999999999999986 599999
Q ss_pred CCcccEEEeCCCCCCChhhc-----cCCeEEEEEECCEEeCC
Q 008063 543 GKIADFVILSTSSWEDFAAE-----VSASIEATYVSGVQAYP 579 (579)
Q Consensus 543 G~~ADlvvld~~~~~~~~~~-----~~~~v~~v~v~G~~v~~ 579 (579)
|+.|||||||.++..+...+ ....|..||++|++||.
T Consensus 423 G~~AD~vv~d~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~~ 464 (480)
T 3gip_A 423 GAWADVVVFDPDTVADRATWDEPTLASVGIAGVLVNGAEVFP 464 (480)
T ss_dssp TSBCCEEEECTTTCBCCCCSSSTTCCCBSEEEEEETTEEEES
T ss_pred CCCCCEEEEcCccccCccccccccccCCCccEEEECCEEEEE
Confidence 99999999999874322211 23579999999999873
|
| >2vr2_A Dihydropyrimidinase; hydantoinase, metal-binding, disease mutation, dihydropyrimi amidohydrolase, nucleotide metabolism, DPYS, dhpase, hydrolase; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=3.3e-26 Score=248.31 Aligned_cols=214 Identities=18% Similarity=0.115 Sum_probs=121.5
Q ss_pred CCHHHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHH------------------------HHHhcCCCCCCceEeec
Q 008063 363 MELESLLSMTMASDKSGLQVAIHAIGDRANDLVLDMYKS------------------------VVVTTGKRDQRFRIEHA 418 (579)
Q Consensus 363 ~~~~~l~~~~~~a~~~g~~i~iH~~g~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~i~H~ 418 (579)
++.+.+.++++.+++.+.++.+|+.....+...++.+.+ ........+.+.++.|+
T Consensus 192 ~~~~~l~~~~~~a~~~g~~v~~H~e~~~~~~~~~~~l~~~G~~~~~~h~~~~~~~~e~~a~~~~~~la~~~~~p~~~~h~ 271 (541)
T 2vr2_A 192 VTDLELYEAFSRCKEIGAIAQVHAENGDLIAEGAKKMLALGITGPEGHELCRPEAVEAEATLRAITIASAVNCPLYIVHV 271 (541)
T ss_dssp CCHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHHHHHHHTTCCSTHHHHHTSCHHHHHHHHHHHHHHHHHHTCCEEEEEE
T ss_pred CCHHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHHHHcCCCChhhccccchhHHHHHHHHHHHHHHHHhCCCEEEEeC
Confidence 688999999999999999999999654322222211110 00000011235566666
Q ss_pred cC-CChhhHHHHhhCCcEE--EecccccccchhHH-----H-----HhhChhhh-hhhhhhHHHHHHCCCeeeecCCCCC
Q 008063 419 QH-LASGTAARFGDQGIVA--SMQPQHLLDDADSA-----R-----KKLGVDRA-ERESYLFQSLLANNALLALGSDWPV 484 (579)
Q Consensus 419 ~~-~~~~~~~~~~~~~i~~--~~~p~~~~~~~~~~-----~-----~~l~~~~~-~~~~~~l~~l~~~Gi~v~~gsD~~~ 484 (579)
.. ...+.++.+++.|+.+ ..+|.+...+...+ . ...++.|. .+....+.++++.|+..++|||.+.
T Consensus 272 ss~~~~~~i~~ar~~G~~v~~e~~~~~L~~d~~~~~~~~~~~~~~~~~~pplr~~~~~~~~l~~~l~~g~~~~~gtD~~~ 351 (541)
T 2vr2_A 272 MSKSAAKVIADARRDGKVVYGEPIAASLGTDGTHYWNKEWHHAAHHVMGPPLRPDPSTPDFLMNLLANDDLTTTGTDNCT 351 (541)
T ss_dssp CCHHHHHHHHHHHHTTCCEEEEEBHHHHHCCSGGGGCSSHHHHHTTCCSSCCCSCTTHHHHHHHHHHTTSSCCCBCCBCC
T ss_pred CCHHHHHHHHHHHHcCCeEEEEeehhhhcCCHHHhcCccccccCceEECCCCCCCcchHHHHHHHHhcCCeEEEEeCCCC
Confidence 42 1123344566677543 23333322111100 0 01112111 0233446778999999999999753
Q ss_pred CCCCHHHHHH--HHHcccCCC--C-CC-------CCCCCCCCCHHHHHHHHcHHHHHhcccCCccccccCCCcccEEEeC
Q 008063 485 ADINPLCAIR--TAMKRIPPG--W-DN-------AWIPSERISLTDALIAHTLSAARACFLENDVGSLSPGKIADFVILS 552 (579)
Q Consensus 485 ~~~~~~~~~~--~~~~~~~~~--~-~~-------~~~~~~~ls~~~al~~~T~npA~~lgl~~~~G~I~~G~~ADlvvld 552 (579)
. ...+... ....+...+ + +. .+....+++++++++++|.|||++||+++++|+|++|+.|||||||
T Consensus 352 ~--~~~~k~~~~~~~~~~p~G~~G~e~~l~~~~~~~v~~~~l~~~~~~~~~T~~pA~~lgl~~~~G~i~~G~~ADlvv~d 429 (541)
T 2vr2_A 352 F--NTCQKALGKDDFTKIPNGVNGVEDRMSVIWEKGVHSGKMDENRFVAVTSTNAAKIFNLYPRKGRIAVGSDADIVIWD 429 (541)
T ss_dssp C--CHHHHGGGSSCGGGSCCCBCCTTTHHHHHHHHHTTTTSSCHHHHHHHHTHHHHHHTTCTTTSSCCSTTSBCCEEEEE
T ss_pred C--ChHHhcccCCChhhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHhHHHHHHhCCCCCCCccCCCCCCCEEEEc
Confidence 2 2211100 000000000 0 00 0013456999999999999999999998779999999999999999
Q ss_pred CCCCC--------------Chhhc-cCCeEEEEEECCEEeC
Q 008063 553 TSSWE--------------DFAAE-VSASIEATYVSGVQAY 578 (579)
Q Consensus 553 ~~~~~--------------~~~~~-~~~~v~~v~v~G~~v~ 578 (579)
.++.. +++.. ...+|..||++|++||
T Consensus 430 ~~~~~~~~~~~~~~~~~~~p~~g~~~~g~v~~v~v~G~~v~ 470 (541)
T 2vr2_A 430 PKGTRTISAKTHHQAVNFNIFEGMVCHGVPLVTISRGKVVY 470 (541)
T ss_dssp EEEEEECCTTTCSSSCSCCTTTTCEEEEEEEEEEETTEEEE
T ss_pred CCcCeEeCHHHhhcccCCCccCCCEEeeeEEEEEECCEEEE
Confidence 77531 11111 1346899999999987
|
| >2vhl_A N-acetylglucosamine-6-phosphate deacetylase; N- acetyleglucosamine-6-phosphate, carbohydrate metabolism, hydrolase; HET: GLP PGE; 2.05A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.95 E-value=3.6e-27 Score=246.33 Aligned_cols=177 Identities=18% Similarity=0.057 Sum_probs=115.6
Q ss_pred HHHHHHHHCCCeEEE-Eecc-hHHHHHHHHHHHHHHHh--cCCC---------------CCCc---eEeeccCCChhhHH
Q 008063 370 SMTMASDKSGLQVAI-HAIG-DRANDLVLDMYKSVVVT--TGKR---------------DQRF---RIEHAQHLASGTAA 427 (579)
Q Consensus 370 ~~~~~a~~~g~~i~i-H~~g-~~~~~~~~~~~~~~~~~--~~~~---------------~~~~---~i~H~~~~~~~~~~ 427 (579)
++++.++++|+++.+ |+.. ...+...++........ ++.. ..+. .+.|+.++++++++
T Consensus 186 ~~~~~a~~~g~~v~~gH~~~~~~~~~~a~~~G~~~i~H~~~~~~~~~~~~~G~~~~~~~~~~~~~e~~~h~~~l~~~~~~ 265 (396)
T 2vhl_A 186 ELIRHLKDESIIASMGHTDADSALLSDAAKAGASHMTHLYNAMSPFHHREPGVIGTALAHDGFVTELIADGIHSHPLAAK 265 (396)
T ss_dssp HHHHHHHHTTCEEEECSBCCCHHHHHHHHHTTCCEESSTTSSBCCCCSSSCHHHHHHHHCTTCEEEEECSSSSSCHHHHH
T ss_pred HHHHHHHHCCCEEeecccCCCHHHHHHHHHcCCCEeEeCCccCcccccCCCCchhhhhcCCCcEEEEcCCccccCHHHHH
Confidence 567888999999988 9873 34344333210000000 0000 0122 56788888888888
Q ss_pred HHhhC-Cc-EEEecccccccchhHHHHhhChhhhhhhhhhHHHHHHCCCeeeecCCCCCC--CCCHHHHHHHHHcccCCC
Q 008063 428 RFGDQ-GI-VASMQPQHLLDDADSARKKLGVDRAERESYLFQSLLANNALLALGSDWPVA--DINPLCAIRTAMKRIPPG 503 (579)
Q Consensus 428 ~~~~~-~i-~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD~~~~--~~~~~~~~~~~~~~~~~~ 503 (579)
.+.+. +. .+..+|.+....+ +.+... ...++..+.+.| .+.+ +|+... ..+++.+++.++..
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~g------~~~~~~--~~~~~~~~~~~g-~~~~-~d~~~~g~~~~l~~~l~~~~~~---- 331 (396)
T 2vhl_A 266 LAFLAKGSSKLILITDSMRAKG------LKDGVY--EFGGQSVTVRGR-TALL-SDGTLAGSILKMNEGARHMREF---- 331 (396)
T ss_dssp HHHHHHCTTSEEEECCBCTTTT------SCSEEE--EETTEEEEEETT-EEEC-TTSCBCSBCCCHHHHHHHHHHH----
T ss_pred HHHhhcCCccEEEECcChhhcC------CCCceE--EECCeEEEEECC-EEEe-CCCcccccccCHHHHHHHHHHh----
Confidence 77765 54 5677776643110 010000 001233345667 6666 664333 25788888777642
Q ss_pred CCCCCCCCCCCCHHHHHHHHcHHHHHhcccCCccccccCCCcccEEEeCCCCCCChhhccCCeEEEEEECCEEeC
Q 008063 504 WDNAWIPSERISLTDALIAHTLSAARACFLENDVGSLSPGKIADFVILSTSSWEDFAAEVSASIEATYVSGVQAY 578 (579)
Q Consensus 504 ~~~~~~~~~~ls~~~al~~~T~npA~~lgl~~~~G~I~~G~~ADlvvld~~~~~~~~~~~~~~v~~v~v~G~~v~ 578 (579)
.+++++++++++|.|||++||+++++|+|++||.|||||+|.+. +|..||++|++||
T Consensus 332 --------~~~~~~~~l~~aT~~~A~~lgl~~~~G~i~~G~~ADlvv~d~~~----------~v~~v~~~G~~v~ 388 (396)
T 2vhl_A 332 --------TNCSWTDIANITSENAAKQLGIFDRKGSVTVGKDADLVIVSSDC----------EVILTICRGNIAF 388 (396)
T ss_dssp --------HCCCHHHHHHHHTHHHHHHHTCTTTSSSCCTTSBCCEEEECTTC----------CEEEEEETTEEEE
T ss_pred --------cCCCHHHHHHHHHHHHHHHhCCcCCCceeCCCCcCCEEEECCCC----------cEEEEEECCEEEE
Confidence 24899999999999999999999879999999999999999762 7999999999986
|
| >3iv8_A N-acetylglucosamine-6-phosphate deacetylase; IDP01334, fruct phosphate, carbohydrate metabolism, hydrolase; HET: F6P; 2.53A {Vibrio cholerae} PDB: 3egj_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=3.5e-25 Score=226.29 Aligned_cols=71 Identities=24% Similarity=0.369 Sum_probs=63.1
Q ss_pred CCHHHHHHHHHcccCCCCCCCCCCCCCCCHHHHHHHHcHHHHHhcccCCccccccCCCcccEEEeCCCCCCChhhccCCe
Q 008063 487 INPLCAIRTAMKRIPPGWDNAWIPSERISLTDALIAHTLSAARACFLENDVGSLSPGKIADFVILSTSSWEDFAAEVSAS 566 (579)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~npA~~lgl~~~~G~I~~G~~ADlvvld~~~~~~~~~~~~~~ 566 (579)
.+++..++.++. ..++++++|++|+|.|||+++|+++++|+|++||.||||+||.+. +
T Consensus 311 l~l~~~v~~~v~------------~~g~~~~~al~~aT~~pA~~lg~~~~~G~i~~G~~ADlvvld~~~----------~ 368 (381)
T 3iv8_A 311 LTMIEAVQNTVE------------HVGIALDEALRMATLYPAKAIGVDEKLGRIKKGMIANLTVFDRDF----------N 368 (381)
T ss_dssp CCHHHHHHHHHH------------TTCCCHHHHHHHHTHHHHHHHTCTTTSSSCCTTSBCCEEEECTTC----------C
T ss_pred hhHHHHHHHHHH------------hhCCCHHHHHHHHHHHHHHHhCCCCCCceECCCCcCCEEEECCCC----------C
Confidence 567888887764 235999999999999999999999889999999999999999653 7
Q ss_pred EEEEEECCEEeCC
Q 008063 567 IEATYVSGVQAYP 579 (579)
Q Consensus 567 v~~v~v~G~~v~~ 579 (579)
|..||++|++||+
T Consensus 369 v~~t~~~G~~v~~ 381 (381)
T 3iv8_A 369 VKATVVNGQYEQN 381 (381)
T ss_dssp EEEEEETTEEEEC
T ss_pred EEEEEECCEEeeC
Confidence 9999999999985
|
| >4ep8_C Urease subunit alpha; alpha-beta barrel, nickel metalloenzyme, hydrolase, radiatio; HET: KCX; 1.55A {Enterobacter aerogenes} PDB: 1ef2_A* 4epb_C* 4epd_C* 4epe_C* 1ejx_C* 1ejw_C* 1fwj_C* 1kra_C 2kau_C* 1a5k_C 1ejv_C* 1ejt_C* 1eju_C* 1ejs_C* 1a5m_C 1a5n_C 1ejr_C* 1a5l_C 1a5o_C 1fwa_C* ... | Back alignment and structure |
|---|
Probab=99.93 E-value=1.7e-26 Score=252.07 Aligned_cols=108 Identities=16% Similarity=0.109 Sum_probs=78.7
Q ss_pred hhhHHHHHHCCCeeeecCCCCCCCC--CHH----HHHHHHHcccCCCCCCCCCCCCCCCHHHHHHHHcHHHHHhcccCCc
Q 008063 463 SYLFQSLLANNALLALGSDWPVADI--NPL----CAIRTAMKRIPPGWDNAWIPSERISLTDALIAHTLSAARACFLEND 536 (579)
Q Consensus 463 ~~~l~~l~~~Gi~v~~gsD~~~~~~--~~~----~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~npA~~lgl~~~ 536 (579)
......+++.|....+++|...... ... .....+...... .........+++++++|+++|+|||++||++++
T Consensus 341 ~~~~~~l~~~G~~~~i~sD~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~gls~~eal~~aTiNPAralGL~d~ 419 (566)
T 4ep8_C 341 IAAEDVLHDLGAFSLTSSDSQAMGRVGEVILRTWQVAHRMKVQRGA-LAEETGDNDNFRVKRYIAKYTINPALTHGIAHE 419 (566)
T ss_dssp HHHHHHHHHHTSSCEECCCTTSSSCTTCHHHHHHHHHHHHHHHHCS-CTTCCSSSCHHHHHHHHGGGTHHHHHHTTCTTT
T ss_pred hHHHHHHHhCCCcceEeecccccccccccccccCCCCchHHHHHHH-HHHhhhhcCCCCHHHHHHHHHHHHHHHhCCCCC
Confidence 3445667788999999999764431 111 111111111110 011223456799999999999999999999999
Q ss_pred cccccCCCcccEEEeCCCCCCChhhccCCeEEEEEECCEEeC
Q 008063 537 VGSLSPGKIADFVILSTSSWEDFAAEVSASIEATYVSGVQAY 578 (579)
Q Consensus 537 ~G~I~~G~~ADlvvld~~~~~~~~~~~~~~v~~v~v~G~~v~ 578 (579)
+|+|++||+|||||||.++|. .++..|+++|++||
T Consensus 420 iGSIevGK~ADLVL~Dp~~f~-------vkP~~v~~~G~iv~ 454 (566)
T 4ep8_C 420 VGSIEVGKLADLVVWSPAFFG-------VKPATVIKGGMIAI 454 (566)
T ss_dssp SSSSCTTSBCCEEEECGGGTT-------TSCSEEEETTEEEE
T ss_pred CcCCCCCCCCCEEEECccccC-------CCeeEEeeCCEEEE
Confidence 999999999999999988764 37899999999997
|
| >1onw_A Isoaspartyl dipeptidase; amidohydrolase, hydrolase, metalloprotease; HET: KCX; 1.65A {Escherichia coli} SCOP: b.92.1.7 c.1.9.13 PDB: 1onx_A* 1po9_A* 1poj_A* 1pok_B* 2aqo_A* 1ybq_A* 2aqv_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=4.1e-24 Score=222.70 Aligned_cols=172 Identities=19% Similarity=0.164 Sum_probs=106.4
Q ss_pred CCHHHHHHHHHHHHHCCC------eEEEEec-chHHHHHHHHHHHHHHHhcCCCCCCc-eEeeccCCCh----hhHHHHh
Q 008063 363 MELESLLSMTMASDKSGL------QVAIHAI-GDRANDLVLDMYKSVVVTTGKRDQRF-RIEHAQHLAS----GTAARFG 430 (579)
Q Consensus 363 ~~~~~l~~~~~~a~~~g~------~i~iH~~-g~~~~~~~~~~~~~~~~~~~~~~~~~-~i~H~~~~~~----~~~~~~~ 430 (579)
.+.+++.++++.+++.+. .+.+|+. .....+.+.+..+ . +....++ ...|+. ..+ +.++.++
T Consensus 173 ~~~~~l~~~~~~a~~~~~~~~~~g~~~~h~~~~~~~~~~~~~~~~----~-g~~~v~~l~~~h~~-~~~~~~~~~~~~~~ 246 (390)
T 1onw_A 173 PDVYHLANMAAESRVGGLLGGKPGVTVFHMGDSKKALQPIYDLLE----N-CDVPISKLLPTHVN-RNVPLFEQALEFAR 246 (390)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTSCCEEEEEECSCTTTTHHHHHHHH----T-CCCCGGGEEEECGG-GSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhhhhhhhccCceEEEEeCCCHHHHHHHHHHHh----c-cCCceEEeeccccc-cCHHHHHHHHHHHh
Confidence 577888888887765543 3677873 3333333333221 1 1111111 224542 222 3344455
Q ss_pred hCCcEEEecccccccchhHHHHhhChhhhhhhhhhHHHHHHCCCe---eeecCCCCCC-CC----------------CHH
Q 008063 431 DQGIVASMQPQHLLDDADSARKKLGVDRAERESYLFQSLLANNAL---LALGSDWPVA-DI----------------NPL 490 (579)
Q Consensus 431 ~~~i~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~~Gi~---v~~gsD~~~~-~~----------------~~~ 490 (579)
..+.....++.... . ....+++.+++.|++ ++++||+... +. ...
T Consensus 247 ~~~~~~~~~~~~~~--------------~-~~~~~l~~~~~~g~~~d~i~l~TD~~~~~~~~~~~~~~~~~g~~~~~~~~ 311 (390)
T 1onw_A 247 KGGTIDITSSIDEP--------------V-APAEGIARAVQAGIPLARVTLSSDGNGSQPFFDDEGNLTHIGVAGFETLL 311 (390)
T ss_dssp TTCCEEEETTCCSS--------------S-CHHHHHHHHHHTTCCGGGEEEECCBTCC-------------CCCCSHHHH
T ss_pred cCCccccccccCCC--------------C-cCHHHHHHHHHcCCCccceEEEccCCCCCcccCCccccccccCCCHHHHH
Confidence 55543344432211 0 234478899999984 7999997422 10 122
Q ss_pred HHHHHHHcccCCCCCCCCCCCCCCCHHHHHHHHcHHHHHhcccCCccccccCCCcccEEEeCCCCCCChhhccCCeEEEE
Q 008063 491 CAIRTAMKRIPPGWDNAWIPSERISLTDALIAHTLSAARACFLENDVGSLSPGKIADFVILSTSSWEDFAAEVSASIEAT 570 (579)
Q Consensus 491 ~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~npA~~lgl~~~~G~I~~G~~ADlvvld~~~~~~~~~~~~~~v~~v 570 (579)
..++.++. ..+++++++++++|.|||+.||++ .+|+|++|+.|||||+|.+ + .|..|
T Consensus 312 ~~~~~~~~------------~~~~~~~~~~~~~t~npA~~~gl~-~~G~i~~G~~ADlvv~d~~-~---------~v~~v 368 (390)
T 1onw_A 312 ETVQVLVK------------DYDFSISDALRPLTSSVAGFLNLT-GKGEILPGNDADLLVMTPE-L---------RIEQV 368 (390)
T ss_dssp HHHHHHHH------------HHCCCHHHHHGGGTHHHHHHTTCT-TCSSCCTTSBCCEEEECTT-C---------CEEEE
T ss_pred HHHHHHHH------------HcCCCHHHHHHHHhHHHHHHhCCC-CCcccCCCCcCCEEEEcCC-C---------cEEEE
Confidence 33333321 235999999999999999999996 4799999999999999976 2 58899
Q ss_pred EECCEEeC
Q 008063 571 YVSGVQAY 578 (579)
Q Consensus 571 ~v~G~~v~ 578 (579)
|++|++||
T Consensus 369 ~~~G~~v~ 376 (390)
T 1onw_A 369 YARGKLMV 376 (390)
T ss_dssp EETTEEEE
T ss_pred EECCEEEE
Confidence 99999886
|
| >1o12_A N-acetylglucosamine-6-phosphate deacetylase; structural genomics, TM0814, JCSG, PSI, protein structure initiative; 2.50A {Thermotoga maritima} SCOP: b.92.1.5 c.1.9.10 | Back alignment and structure |
|---|
Probab=99.87 E-value=2.4e-22 Score=207.87 Aligned_cols=69 Identities=19% Similarity=0.227 Sum_probs=60.7
Q ss_pred CCHHHHHHHHHcccCCCCCCCCCCCCCCCHHHHHHHHcHHHHHhcccCCccccccCCCcccEEEeCCCCCCChhhccCCe
Q 008063 487 INPLCAIRTAMKRIPPGWDNAWIPSERISLTDALIAHTLSAARACFLENDVGSLSPGKIADFVILSTSSWEDFAAEVSAS 566 (579)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~npA~~lgl~~~~G~I~~G~~ADlvvld~~~~~~~~~~~~~~ 566 (579)
.+++.+++.++.. .+++++++++++|.|||++||++++ |+|++|+.|||||+|.+ .+
T Consensus 305 ~~l~~~l~~~~~~------------~~~~~~~~l~~~T~~~A~~lgl~~~-G~i~~G~~ADlv~~d~~----------~~ 361 (376)
T 1o12_A 305 LFFSQAVKNFRKF------------TGCSITELAKVSSYNSCVELGLDDR-GRIAEGTRADLVLLDED----------LN 361 (376)
T ss_dssp CCHHHHHHHHHHH------------HCCCHHHHHHHHTHHHHHHTTCTTS-SCCSTTSBCCEEEECTT----------CC
T ss_pred cCHHHHHHHHHHH------------cCCCHHHHHHHHHHHHHHHhCCCCC-ccCCCCCcCCEEEECCC----------CC
Confidence 5788888877642 2489999999999999999999875 99999999999999966 27
Q ss_pred EEEEEECCEEeC
Q 008063 567 IEATYVSGVQAY 578 (579)
Q Consensus 567 v~~v~v~G~~v~ 578 (579)
|..||++|++||
T Consensus 362 v~~v~~~G~~v~ 373 (376)
T 1o12_A 362 VVMTIKEGEVVF 373 (376)
T ss_dssp EEEEEETTEEEE
T ss_pred EEEEEECCEEEe
Confidence 999999999986
|
| >3pnu_A Dihydroorotase; TIM barrel, zinc binding, hydrolase, structu genomics, center for structural genomics of infectious DISE csgid; HET: KCX; 2.40A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=99.70 E-value=7.5e-16 Score=156.35 Aligned_cols=252 Identities=12% Similarity=0.096 Sum_probs=149.2
Q ss_pred HHHhcCccEEEeCCcCCCCCccccchHHHHHHHHHHhhcCC-CeeEEEEc--cCccchhhHHHHHHhcCCCCCCceEEce
Q 008063 255 LALSRGVTTVVDFGRYYPGESVQLSWEDFADVYQWASYSEK-MKIRVCLF--FPLETWSSLADLINKTGHVLSDWVYLGG 331 (579)
Q Consensus 255 ~~~~~Git~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~v~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~g 331 (579)
.+.+.|+|++.++.+..|. ..+.+......+.++.... ..+..+.. ....+.++..+... . ..+
T Consensus 48 aA~aGG~Ttvi~mPnt~P~---~~~~~~~~~~~~~a~~~~~~vd~~~~~~l~lt~~~~~el~~l~~-------~---v~~ 114 (359)
T 3pnu_A 48 PLSARDFCAAVIMPNLIPP---LCNLEDLKAYKMRILKACKDENFTPLMTLFFKNYDEKFLYSAKD-------E---IFG 114 (359)
T ss_dssp HHHHTTCSEEEECCCCSSC---CCSHHHHHHHHHHHHHHHTTSCCEEEEEEECSCCCHHHHHHHTT-------T---CSE
T ss_pred HHHhCCCcEEEECCCCCCC---CCcHHHHHHHHHHHhccCCCceEEEeeeeEecCCCHHHHHHHHH-------h---hhe
Confidence 5777899999998744332 2334333333444433222 22222222 33222223322211 1 235
Q ss_pred EEEEEcCccCCCcccccCCCCCCCCCCcccCCCHHHHHHHHHHHHHCCCeEEEEecchHH----HHHHHHHHHHHHHhcC
Q 008063 332 VKAFADGSLGSNSALFHEPYADEPHNYGLQVMELESLLSMTMASDKSGLQVAIHAIGDRA----NDLVLDMYKSVVVTTG 407 (579)
Q Consensus 332 ~k~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~i~iH~~g~~~----~~~~~~~~~~~~~~~~ 407 (579)
+|++..|... +.+ .+....+.+.+.++++.+++.|.++.+|+....- ....++....+.+.+
T Consensus 115 ~Kl~~aga~~---------~s~----~~~~~~~~~~l~~~l~~~~~~g~~v~vHaEd~~~i~~~E~~ai~r~~~la~~~- 180 (359)
T 3pnu_A 115 IKLYPAGITT---------NSN----GGVSSFDIEYLKPTLEAMSDLNIPLLVHGETNDFVMDRESNFAKIYEKLAKHF- 180 (359)
T ss_dssp EEECBTTSSS---------SCT----TSBCCCCHHHHHHHHHHHHHTTCCEEECCCCSSCGGGTTGGGHHHHHHHHHHC-
T ss_pred hhheeCCCcc---------cCc----CCcccCCHHHHHHHHHHHHHcCCEEEEecCCchHhHHHHHHHHHHHHHHHHHc-
Confidence 6776554321 110 0122247899999999999999999999974320 011111111111212
Q ss_pred CCCCCceEeeccCCChhhHHHHhh-CCcEEEecccccccchhHHH--------HhhChhhhhhhhhhHHHHHHCCCee-e
Q 008063 408 KRDQRFRIEHAQHLASGTAARFGD-QGIVASMQPQHLLDDADSAR--------KKLGVDRAERESYLFQSLLANNALL-A 477 (579)
Q Consensus 408 ~~~~~~~i~H~~~~~~~~~~~~~~-~~i~~~~~p~~~~~~~~~~~--------~~l~~~~~~~~~~~l~~l~~~Gi~v-~ 477 (579)
.+.+.++.|... .+.++.+++ ..+++.+||++...+.+.+. +..+|.|.++....+.+.+..|.+. .
T Consensus 181 -~g~~lhi~HvSt--~~~v~~I~~A~~VtaEv~phhL~lt~~~~~~~~~~~~~k~~PPLR~~~dr~aL~~al~dG~id~~ 257 (359)
T 3pnu_A 181 -PRLKIVMEHITT--KTLCELLKDYENLYATITLHHLIITLDDVIGGKMNPHLFCKPIAKRYEDKEALCELAFSGYEKVM 257 (359)
T ss_dssp -TTSCEEECSCCS--HHHHHHHHHCTTEEEEECSGGGTCCHHHHHTSSCCGGGCCSSCCCCHHHHHHHHHHHHTTCTTEE
T ss_pred -CCCcEEEEecCc--HHHHHHHHhcCCceEEEechhhEEcHHHhcCcCCCCceEEcCCCCCHHHHHHHHHHHhcCCCCEE
Confidence 256888888763 555565555 58999999999987666553 2345666656677788888999888 7
Q ss_pred ecCCCCCCCCCHH----------------HHHHHHHcccCCCCCCCCCCCCCCCHHHHHHHHcHHHHHhcccCCcccccc
Q 008063 478 LGSDWPVADINPL----------------CAIRTAMKRIPPGWDNAWIPSERISLTDALIAHTLSAARACFLENDVGSLS 541 (579)
Q Consensus 478 ~gsD~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~npA~~lgl~~~~G~I~ 541 (579)
++||.+.-..+.. ..+...+ ..+++++++++.++.|||+++|++.+.
T Consensus 258 iaTDHaPh~~~eK~~~~g~~Gi~~~~~~L~l~~~~~-------------~~~~~l~~lv~~~s~nPAki~gL~~~~---- 320 (359)
T 3pnu_A 258 FGSDSAPHPKDTKECCGCAAGVFSAPVILPVLAELF-------------KQNSSEENLQKFLSDNTCKIYDLKFKE---- 320 (359)
T ss_dssp ECCCBCCCBC------CCCSCBCCGGGHHHHHHHHH-------------HHHSCHHHHHHHHTHHHHHHHTCCCSS----
T ss_pred EecCCCCCCHHHhCCCCCCCChhhHHHHHHHHHHHH-------------hhcCCHHHHHHHHHHhHHHHhCCCCCC----
Confidence 9999654322111 1112221 123689999999999999999997533
Q ss_pred CCCcccEEEeCCCCCC
Q 008063 542 PGKIADFVILSTSSWE 557 (579)
Q Consensus 542 ~G~~ADlvvld~~~~~ 557 (579)
| |||+|+| .+|.
T Consensus 321 -G--Adlvl~d-~~~~ 332 (359)
T 3pnu_A 321 -D--KILTLEE-KEWQ 332 (359)
T ss_dssp -C--CEEEEEC-CCEE
T ss_pred -C--CeEEEEe-cCEE
Confidence 4 9999999 7665
|
| >3ggm_A Uncharacterized protein BT9727_2919; bacillus cereus group., structural genomics, PSI-2, protein structure initiative; 2.00A {Bacillus thuringiensis serovarkonkukian} | Back alignment and structure |
|---|
Probab=99.57 E-value=5.7e-15 Score=116.40 Aligned_cols=73 Identities=34% Similarity=0.484 Sum_probs=60.9
Q ss_pred CccEEEEcCeEEeCCCCCCeeeEEEEECCEEEEecChHHHHhhccCCCeEEeCCCCeeecccccccccccccCc
Q 008063 44 EADLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHFIPGGL 117 (579)
Q Consensus 44 ~~~~likn~~v~~~~~~~~~~~~v~I~~GkI~~Ig~~~~~~~~~~~~~~viD~~g~~V~PG~ID~H~H~~~~~~ 117 (579)
.++++|+|++|+++++.....++|+|+||||++|++..+... .+++.++||++|++|+|||||+|+|+..+.+
T Consensus 3 ~~~~li~n~~i~~~~~~~~~~~~i~I~~g~I~~ig~~~~~~~-~~~~~~viD~~g~~v~PG~ID~H~H~~~p~~ 75 (81)
T 3ggm_A 3 VPDMILYNGKITTLDPSQPEVSAIAITDGLITAVGGDELLNS-ATEKTKKIDLKRKRAIPGLNDSHIHVIRGLE 75 (81)
T ss_dssp CCSEEEESSEEECSCTTCSEESEEEEETTEEEEEESGGGGGG-CCTTCEEEECTTCEEEECCCCTTEEEECCCC
T ss_pred cCCEEEECCEEEeCCCCCccccEEEEECCEEEEEeCchHhcc-cCCCCEEEECCCCEEeeCeEeeeeCCCCccc
Confidence 467999999999987765567899999999999998755322 1356789999999999999999999988765
|
| >2z26_A Dihydroorotase, dhoase; TIM barrel, hydrolase; HET: KCX DOR NCD; 1.29A {Escherichia coli} PDB: 2z24_A* 2z25_A* 2eg6_A* 1xge_A* 2eg7_A* 2eg8_A* 2z27_A* 2e25_A* 2z28_A* 2z29_A* 3mjm_A* 2z2a_A* 1j79_A* 2z2b_A* 3ihn_A* 3jze_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=2.8e-13 Score=137.94 Aligned_cols=161 Identities=14% Similarity=0.157 Sum_probs=103.8
Q ss_pred CCHHHHHHHHHHHHHCCCeEEEEecchH--------HHHHHHHHHHHHHHhcCCCCCCceEeeccCCChhhHHHHhh--C
Q 008063 363 MELESLLSMTMASDKSGLQVAIHAIGDR--------ANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLASGTAARFGD--Q 432 (579)
Q Consensus 363 ~~~~~l~~~~~~a~~~g~~i~iH~~g~~--------~~~~~~~~~~~~~~~~~~~~~~~~i~H~~~~~~~~~~~~~~--~ 432 (579)
.+.+.+.++++.+++.|.++.+|+.... +...+.+.+...... ..+.+.++.|... .+.++.+++ .
T Consensus 117 ~~~~~l~~~~~~~~~~~~~v~vH~ed~~~~~~~~~~E~~~~~~~i~~~la~--~~~~~~hi~Hvst--~~~~~~i~~ak~ 192 (347)
T 2z26_A 117 TSVDAIMPVLERMEKIGMPLLVHGEVTHADIDIFDREARFIESVMEPLRQR--LTALKVVFEHITT--KDAADYVRDGNE 192 (347)
T ss_dssp SCGGGGHHHHHHHHHHTCCEEECCCCCCTTSCGGGHHHHHHHHTHHHHHHH--STTCCEEECSCCS--HHHHHHHHTSCT
T ss_pred CCHHHHHHHHHHHHHhCCEEEEEecCCccccCHHHHHHHHHHHHHHHHHHh--hcCCcEEEEECCc--HHHHHHHHHhCC
Confidence 3567899999999999999999996322 111111111111222 2466888888753 555555554 4
Q ss_pred CcEEEecccccccchhHHH--------HhhChhhhhhhhhhHHHHHHCCCee-eecCCCCCCCC---------------C
Q 008063 433 GIVASMQPQHLLDDADSAR--------KKLGVDRAERESYLFQSLLANNALL-ALGSDWPVADI---------------N 488 (579)
Q Consensus 433 ~i~~~~~p~~~~~~~~~~~--------~~l~~~~~~~~~~~l~~l~~~Gi~v-~~gsD~~~~~~---------------~ 488 (579)
++++.+||++...+.+.+. +..++.|.++....+...+..|.+. .++||...... .
T Consensus 193 ~Vt~e~~ph~L~l~~~~~~~~~~~~~~k~~PPLR~~~d~~aL~~~l~~G~id~~i~SDhaP~~~~~K~~~~g~~Gi~~~e 272 (347)
T 2z26_A 193 RLAATITPQHLMFNRNHMLVGGVRPHLYCLPILKRNIHQQALRELVASGFNRVFLGTDSAPHARHRKESSCGCAGCFNAP 272 (347)
T ss_dssp TEEEEECHHHHHCCHHHHHTTSBCGGGCCSSCCCCHHHHHHHHHHHHTTCTTEEECCCBCCCCHHHHSSSSBCCCCCCTT
T ss_pred CceEeecchHheecHHHhcCcCCCccEEEeCCCCCHHHHHHHHHHHhcCCCCeEEecCCCCCCHHHhcCCCCCCCcCcHH
Confidence 6899999999876655443 2345555445666788888899877 89999732210 0
Q ss_pred -HHHHHHHHHcccCCCCCCCCCCCCCCCHHHHHHHHcHHHHHhcccCCccccc
Q 008063 489 -PLCAIRTAMKRIPPGWDNAWIPSERISLTDALIAHTLSAARACFLENDVGSL 540 (579)
Q Consensus 489 -~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~npA~~lgl~~~~G~I 540 (579)
.+..+...+ ..+++++++++++|.|||+++|+..++|+|
T Consensus 273 ~~l~l~~~~~-------------~~~~sl~~~v~~~s~nPAki~gl~~~kG~i 312 (347)
T 2z26_A 273 TALGSYATVF-------------EEMNALQHFEAFCSVNGPQFYGLPVNDTFI 312 (347)
T ss_dssp THHHHHHHHH-------------HHTTCGGGHHHHHHTHHHHHHTCCCCCCEE
T ss_pred HHHHHHHHHh-------------hcCCCHHHHHHHHhHhHHHHhCCCCCCCeE
Confidence 111111111 124799999999999999999997557875
|
| >2pgf_A Adenosine deaminase; metallo-dependent hydrolase, structural genomics, medical ST genomics of pathogenic protozoa consortium, MSGPP; HET: MSE ADN; 1.89A {Plasmodium vivax} PDB: 2pgr_A* 2qvn_A* 3ewc_A* 3ewd_A* 2amx_A | Back alignment and structure |
|---|
Probab=99.10 E-value=6.5e-10 Score=113.71 Aligned_cols=236 Identities=14% Similarity=0.066 Sum_probs=147.1
Q ss_pred CCHHHHHHHHHHHHHHHHhcCccEEEeC---Cc--CCCCCccccchHHHHHHHHHHhhcC--CCeeEEEEccC----ccc
Q 008063 240 VSVDERREALLRASNLALSRGVTTVVDF---GR--YYPGESVQLSWEDFADVYQWASYSE--KMKIRVCLFFP----LET 308 (579)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~Git~v~~~---~~--~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~v~~~~~----~~~ 308 (579)
.++++++......++.+.+.|+|.+.-. .. ...+.+.....+...+..+.+.+.- .+.+++..... .+.
T Consensus 108 ~t~ed~~~~a~~~l~e~~~~GV~y~E~r~dp~~~~~~~gl~~~~~~~a~~~~~~~a~~~~~~gi~~~li~~~~r~~~~~~ 187 (371)
T 2pgf_A 108 HDYEVIEDLAKHAVFNKYKEGVVLMEFRYSPTFVAFKYNLDIELIHQAIVKGIKEVVELLDHKIHVALMCIGDTGHEAAN 187 (371)
T ss_dssp CSHHHHHHHHHHHHHHHHHHTEEEEEEEECHHHHHTTTTCCHHHHHHHHHHHHHHHHHHTTTSSEEEEEEEEEESSTTCC
T ss_pred CCHHHHHHHHHHHHHHHHHCCCEEEEEEECcccccccCCCCHHHHHHHHHHHHHHHHHHccCCCEEEEEEEecCCCCHHH
Confidence 4789999999999999999999987321 00 0112222122222333444443333 44444443321 122
Q ss_pred hhhHHHHHHhcCCCCCCceEEceEEEEEcCccCCCcccccCCCCCCCCCCcccCCCHHHHHHHHHHHHHCCCeEEEEecc
Q 008063 309 WSSLADLINKTGHVLSDWVYLGGVKAFADGSLGSNSALFHEPYADEPHNYGLQVMELESLLSMTMASDKSGLQVAIHAIG 388 (579)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~g~k~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~i~iH~~g 388 (579)
..+..+.... ..+. ..|+.+..+ +. . ++.+.++++.|++.|+++.+|+.+
T Consensus 188 ~~~~~~~a~~----~~~~--vvg~dl~g~-------------e~----------~-~~~~~~~~~~A~~~gl~~~~HagE 237 (371)
T 2pgf_A 188 IKASADFCLK----HKAD--FVGFDHGGH-------------EV----------D-LKEYKEIFDYVRESGVPLSVHAGE 237 (371)
T ss_dssp HHHHHHHHHH----TTTT--EEEEEEEES-------------CC----------C-GGGGHHHHHHHHHTTCCBEEEESC
T ss_pred HHHHHHHHHh----CCCC--EEEEecCCC-------------cc----------c-HHHHHHHHHHHHHcCCcEEEeeCC
Confidence 2233333222 1111 223322211 11 1 456889999999999999999975
Q ss_pred h--HHH-HHHHHHHHHHHHhcCCCCCCceEeeccCCChhh--HHHHhhCCcEEEecccccccchhHHHHhhChhhhhhhh
Q 008063 389 D--RAN-DLVLDMYKSVVVTTGKRDQRFRIEHAQHLASGT--AARFGDQGIVASMQPQHLLDDADSARKKLGVDRAERES 463 (579)
Q Consensus 389 ~--~~~-~~~~~~~~~~~~~~~~~~~~~~i~H~~~~~~~~--~~~~~~~~i~~~~~p~~~~~~~~~~~~~l~~~~~~~~~ 463 (579)
. ... ..+.+++. ..+ ...+.|+..+.+++ ++++++.++.+++||.+|.. ++.... -..
T Consensus 238 ~~~~~~~~~i~~al~----~lg----~~ri~Hgv~l~~~~~l~~~l~~~~i~v~~cP~SN~~--------l~~~~~-~~~ 300 (371)
T 2pgf_A 238 DVTLPNLNTLYSAIQ----VLK----VERIGHGIRVAESQELIDMVKEKNILLEVCPISNVL--------LKNAKS-MDT 300 (371)
T ss_dssp CTTSSSSHHHHHHHH----TSC----CSEEEECGGGGGCHHHHHHHHHTTCEEEECHHHHHH--------TTSSSC-GGG
T ss_pred CCCCCchHHHHHHHh----ccC----CCEEecchhccccHHHHHHHHHcCCeEEECcchhHH--------hCCCCc-ccc
Confidence 4 221 22222222 112 34899999997766 99999999999999999852 221000 134
Q ss_pred hhHHHHHHCCCeeeecCCCCCC-CCCHHHHHHHHHcccCCCCCCCCCCCCCCCHHHHHHHHcHHHHHhcccCC
Q 008063 464 YLFQSLLANNALLALGSDWPVA-DINPLCAIRTAMKRIPPGWDNAWIPSERISLTDALIAHTLSAARACFLEN 535 (579)
Q Consensus 464 ~~l~~l~~~Gi~v~~gsD~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~npA~~lgl~~ 535 (579)
.|++.++++|++|++|||.+.. ..+++.+++.+.... +++++++ ..+|.|++++.++++
T Consensus 301 ~pi~~ll~~Gv~V~lgTD~~~~~~~~l~~e~~~a~~~~------------~l~~~~l-~~lt~ns~~asf~~~ 360 (371)
T 2pgf_A 301 HPIRQLYDAGVKVSVNSDDPGMFLTNINDDYEELYTHL------------NFTLEDF-MKMNEWALEKSFMDS 360 (371)
T ss_dssp CTHHHHHHTTCEEEECCBCHHHHTCCHHHHHHHHHHHH------------CCCHHHH-HHHHHHHHHHCCSCH
T ss_pred ChHHHHHHCCCeEEEeCCCCcccCCCHHHHHHHHHHHh------------CCCHHHH-HHHHHHHHHHHcCCH
Confidence 5899999999999999997643 358888888776532 5899995 888999999998864
|
| >3rys_A Adenosine deaminase 1; SGX, hydrolase; HET: ADE; 2.60A {Arthrobacter aurescens} SCOP: c.1.9.0 | Back alignment and structure |
|---|
Probab=98.94 E-value=1.1e-08 Score=102.91 Aligned_cols=240 Identities=11% Similarity=0.048 Sum_probs=146.1
Q ss_pred CHHHHHHHHHHHHHHHHhcCccEEEeCCc----CCCCCccccchHHHHHHHHHHhhcCCCeeEEEEccC-ccchhhHHHH
Q 008063 241 SVDERREALLRASNLALSRGVTTVVDFGR----YYPGESVQLSWEDFADVYQWASYSEKMKIRVCLFFP-LETWSSLADL 315 (579)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~Git~v~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~-~~~~~~~~~~ 315 (579)
++++++......++.+.+.|++.+--... ...|.+....++...+..+..++.-.+.+++..... ..+.+...+.
T Consensus 75 ~~e~~~~~~~~~l~~~~~dgV~y~Eir~~P~~~~~~gl~~~~~v~~v~~~~~~a~~~~gi~~~lI~~~~R~~~~~~a~~~ 154 (343)
T 3rys_A 75 TEQDFTDMTRAYLERAAAGGVRHAEIMMDPQAHTSRGVALETCVNGVANALATSEEDFGVSTLLIAAFLRDMSEDSALEV 154 (343)
T ss_dssp SHHHHHHHHHHHHHHHHHTTEEEEEEEECHHHHHTTTCCHHHHHHHHHHHHTTHHHHHSCEEEEEEEEETTSCHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHCCCEEEEEEecHHHhccCCCCHHHHHHHHHHHHHHHhhcCceeEEEEEEeCCCCCHHHHHHH
Confidence 67899999999999999999987643210 001221111122222222222222234444443221 1111222222
Q ss_pred HHhcCCCCCCceEEceEEEEEcCccCCCcccccCCCCCCCCCCcccCCCHHHHHHHHHHHHHCCCeEEEEecchHHHHHH
Q 008063 316 INKTGHVLSDWVYLGGVKAFADGSLGSNSALFHEPYADEPHNYGLQVMELESLLSMTMASDKSGLQVAIHAIGDRANDLV 395 (579)
Q Consensus 316 ~~~~~~~~~~~~~~~g~k~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~i~iH~~g~~~~~~~ 395 (579)
....... .+. ..|+.+..+. . ..+++.+.++++.|++.|+++++|+.+......+
T Consensus 155 l~~a~~~-~~~--vvG~dL~g~E------------~----------~~~~~~~~~~~~~A~~~gl~~~~HagE~~~~~~i 209 (343)
T 3rys_A 155 LDQLLAM-HAP--IAGIGLDSAE------------V----------GNPPSKFERLYQRAAEAGLRRIAHAGEEGPASYI 209 (343)
T ss_dssp HHHHHHT-TCC--CCEEEEESCC------------T----------TCCGGGGHHHHHHHHHTTCEEEEEESSSSCHHHH
T ss_pred HHHHHhC-CCC--EEEEecCCcc------------c----------CCCHHHHHHHHHHHHHCCCeEEEeeCCCCCHHHH
Confidence 2221111 121 2344332110 0 0345678899999999999999999754333333
Q ss_pred HHHHHHHHHhcCCCCCCceEeeccCCC--hhhHHHHhhCCcEEEecccccccchhHHHHhhChhhhhhhhhhHHHHHHCC
Q 008063 396 LDMYKSVVVTTGKRDQRFRIEHAQHLA--SGTAARFGDQGIVASMQPQHLLDDADSARKKLGVDRAERESYLFQSLLANN 473 (579)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~i~H~~~~~--~~~~~~~~~~~i~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~~G 473 (579)
.+++. ..+ ...+.|+..+. ++.++++++.++.+.+||.+|.. ++.... -...|++.|+++|
T Consensus 210 ~~al~----~lg----~~rIgHgv~l~~d~~l~~~l~~~~i~le~cP~SN~~--------l~~~~~-~~~hPi~~ll~~G 272 (343)
T 3rys_A 210 TEALD----VLH----VERIDHGIRCMEDTDVVQRLVAEQVPLTVCPLSNVR--------LRAVDK-LADHPLPEMLAIG 272 (343)
T ss_dssp HHHHH----TSC----CSEEEECGGGGGCHHHHHHHHHHTCCEEECHHHHHH--------TTSSSC-GGGCSHHHHHHTT
T ss_pred HHHHh----cCC----cceeeeeeeecCChHHHHHHHhcCCCeeEchhHHHH--------hCCCCC-cccchHHHHHHCC
Confidence 33322 122 45799999886 47999999999999999999862 221000 1345899999999
Q ss_pred CeeeecCCCCCCC-CCHHHHHHHHHcccCCCCCCCCCCCCCCCHHHHHHHHcHHHHHhcccCC
Q 008063 474 ALLALGSDWPVAD-INPLCAIRTAMKRIPPGWDNAWIPSERISLTDALIAHTLSAARACFLEN 535 (579)
Q Consensus 474 i~v~~gsD~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~npA~~lgl~~ 535 (579)
++++++||.+... .++..+++.+.... ++++++ +..++.|++++..+++
T Consensus 273 v~V~l~TDdp~~~~~~l~~E~~~a~~~~------------~l~~~~-l~~l~~nsi~~sf~~~ 322 (343)
T 3rys_A 273 LNVCVNSDDPAYFGGYVDDNFEQLVKVL------------EFSVPE-QATLAANSIRSSFASD 322 (343)
T ss_dssp CCEEECCBSTTTTTCCHHHHHHHHHHHH------------CCCHHH-HHHHHHHHHHHSSSCH
T ss_pred CeEEEeCCCccccCCCHHHHHHHHHHHc------------CCCHHH-HHHHHHHHHHHHCCCH
Confidence 9999999987543 57888888776532 489999 4666799999988764
|
| >3iar_A Adenosine deaminase; purine metabolism structural genomics, structural genomics consortium, SGC, D mutation, hereditary hemolytic anemia, hydrolase; HET: 3D1; 1.52A {Homo sapiens} SCOP: c.1.9.1 PDB: 2bgn_E* 1w1i_E* 1qxl_A* 1krm_A* 1vfl_A 1ndv_A* 1ndy_A* 1ndz_A* 1o5r_A* 1uml_A* 1v79_A* 1v7a_A* 1ndw_A 1wxy_A* 1wxz_A* 2e1w_A* 2z7g_A* 2ada_A* 3mvi_A 1a4l_A* ... | Back alignment and structure |
|---|
Probab=98.92 E-value=1.7e-08 Score=102.15 Aligned_cols=140 Identities=15% Similarity=0.153 Sum_probs=102.3
Q ss_pred HHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhcCCCCCCceEeeccCCC--hhhHHHHhhCCcEEEeccccc
Q 008063 366 ESLLSMTMASDKSGLQVAIHAIGDRANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLA--SGTAARFGDQGIVASMQPQHL 443 (579)
Q Consensus 366 ~~l~~~~~~a~~~g~~i~iH~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~H~~~~~--~~~~~~~~~~~i~~~~~p~~~ 443 (579)
+.+.++++.|++.|+++++|+.+......+.+++. ..+ ...+.|+..+. ++.++++++.++.+.+||.+|
T Consensus 192 ~~f~~~f~~A~~~gl~~~~HagE~~~~~~i~~al~----~lg----~~RIgHgv~l~~d~~l~~~l~~~~i~le~cP~SN 263 (367)
T 3iar_A 192 PGHVQAYQEAVKSGIHRTVHAGEVGSAEVVKEAVD----ILK----TERLGHGYHTLEDQALYNRLRQENMHFEICPWSS 263 (367)
T ss_dssp HHHHHHHHHHHHHTCEEEEEESSSSCHHHHHHHHH----TSC----CSEEEECGGGGGCHHHHHHHHHTTCEEEECHHHH
T ss_pred HHHHHHHHHHHHcCCeeEEecCCcCChHHHHHHHH----ccC----CceeeeeeeecCCHHHHHHHHhCCcEEEECHHHH
Confidence 67889999999999999999974433333333322 122 44899999885 579999999999999999998
Q ss_pred ccchhHHHHhhChhhhhhhhhhHHHHHHCCCeeeecCCCCCC-CCCHHHHHHHHHcccCCCCCCCCCCCCCCCHHHHHHH
Q 008063 444 LDDADSARKKLGVDRAERESYLFQSLLANNALLALGSDWPVA-DINPLCAIRTAMKRIPPGWDNAWIPSERISLTDALIA 522 (579)
Q Consensus 444 ~~~~~~~~~~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~ 522 (579)
. .++.... -...|++.|+++|++++++||.+.. ..++..++..+... .++++++ +..
T Consensus 264 ~--------~l~~~~~-~~~hPi~~ll~~Gv~v~l~TDdp~~~~~~l~~e~~~a~~~------------~glt~~e-l~~ 321 (367)
T 3iar_A 264 Y--------LTGAWKP-DTEHAVIRLKNDQANYSLNTDDPLIFKSTLDTDYQMTKRD------------MGFTEEE-FKR 321 (367)
T ss_dssp H--------HTSSSCT-TSCCHHHHHHHTTCCEEECCBSHHHHTCCHHHHHHHHHHH------------HCCCHHH-HHH
T ss_pred H--------HhCCCCC-cccChHHHHHHCCCEEEECCCCccccCCCHHHHHHHHHHH------------cCCCHHH-HHH
Confidence 6 2221111 2356899999999999999997633 34677777666532 2589999 666
Q ss_pred HcHHHHHhcccCC
Q 008063 523 HTLSAARACFLEN 535 (579)
Q Consensus 523 ~T~npA~~lgl~~ 535 (579)
+|.|++++..+++
T Consensus 322 l~~nsi~~sf~~~ 334 (367)
T 3iar_A 322 LNINAAKSSFLPE 334 (367)
T ss_dssp HHHHHHHTSSSCH
T ss_pred HHHHHHHHhCCCH
Confidence 6799999887753
|
| >3pao_A Adenosine deaminase; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; HET: ADE; 2.49A {Pseudomonas aeruginosa} PDB: 3pan_A* 3ou8_A* 3pbm_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=2.7e-09 Score=106.52 Aligned_cols=239 Identities=10% Similarity=0.011 Sum_probs=144.0
Q ss_pred CHHHHHHHHHHHHHHHHhcCccEEEeCC---c-CCCCCccccchHHHHHHHHHHhhcCCCeeEEEEcc-CccchhhHHHH
Q 008063 241 SVDERREALLRASNLALSRGVTTVVDFG---R-YYPGESVQLSWEDFADVYQWASYSEKMKIRVCLFF-PLETWSSLADL 315 (579)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~Git~v~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~-~~~~~~~~~~~ 315 (579)
++++++......++++.+.|++.+--.. . ...+.+....++...+..+..++.-.+.+++.... ...+.+...+.
T Consensus 72 t~ed~~~~a~~~~~~~~~dgV~y~Eir~~P~~~~~~gl~~~~~v~~v~~~~~~a~~~~gi~~~lI~~~~R~~~~~~a~~~ 151 (326)
T 3pao_A 72 TEQDFYDLTWAYLQKCKAQNVVHVEPFFDPQTHTDRGIPFEVVLAGIRAALRDGEKLLGIRHGLILSFLRHLSEEQAQKT 151 (326)
T ss_dssp SHHHHHHHHHHHHHHHHHTTEEEECCEECHHHHHTTTCCHHHHHHHHHHHHHHHHHHHCCEECCEEEEETTSCHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHcCCeEEEEEEChHHhccCCCCHHHHHHHHHHHHHHHHhhCceEEEEEEEeCCCCCHHHHHHH
Confidence 5789999999999999999998753211 0 00122222222223333443333333333333321 11112222232
Q ss_pred HHhcCCCCCCceEEceEEEEEcCccCCCcccccCCCCCCCCCCcccCCCHHHHHHHHHHHHHCCCeEEEEecchHHHHHH
Q 008063 316 INKTGHVLSDWVYLGGVKAFADGSLGSNSALFHEPYADEPHNYGLQVMELESLLSMTMASDKSGLQVAIHAIGDRANDLV 395 (579)
Q Consensus 316 ~~~~~~~~~~~~~~~g~k~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~i~iH~~g~~~~~~~ 395 (579)
.+..... .+ ...|+.+..+. . ..+++.+.++++.|++.|+++++|+.+......+
T Consensus 152 ~~~a~~~-~~--~vvG~dL~g~E-------------~---------~~~~~~~~~~~~~A~~~gl~~~~HagE~~~~~~i 206 (326)
T 3pao_A 152 LDQALPF-RD--AFIAVGLDSSE-------------V---------GHPPSKFQRVFDRARSEGFLTVAHAGEEGPPEYI 206 (326)
T ss_dssp HHHHGGG-GG--GCSEEEEESCC-------------T---------TCCGGGGHHHHHHHHHTTCEECEEESSSSCHHHH
T ss_pred HHHHhhc-cc--cceeeCCCCCC-------------C---------CCCHHHHHHHHHHHHHcCCceeeecCCCCCHHHH
Confidence 2222111 11 12343332110 0 0345678899999999999999999754333333
Q ss_pred HHHHHHHHHhcCCCCCCceEeeccCCC--hhhHHHHhhCCcEEEecccccccchhHHHHhhChhhhhhhhhhHHHHHHCC
Q 008063 396 LDMYKSVVVTTGKRDQRFRIEHAQHLA--SGTAARFGDQGIVASMQPQHLLDDADSARKKLGVDRAERESYLFQSLLANN 473 (579)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~i~H~~~~~--~~~~~~~~~~~i~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~~G 473 (579)
.++++. .+ ...+.|+..+. +++++++++.++.+.+||.+|.. ++.... -...|++.|+++|
T Consensus 207 ~~al~~----lg----~~rigHgv~l~~d~~l~~~l~~~~i~le~cP~SN~~--------l~~~~~-~~~hPi~~ll~~G 269 (326)
T 3pao_A 207 WEALDL----LK----VERIDHGVRAFEDERLMRRLIDEQIPLTVCPLSNTK--------LCVFDD-MSQHTILDMLERG 269 (326)
T ss_dssp HHHHHT----TC----CSSEEECGGGGGCHHHHHHHHHHTCCEEECHHHHHH--------TTSSSS-GGGCCHHHHHHHT
T ss_pred HHHHhc----CC----CceeeeeeeecccHHHHHHHHHcCCeEEECchhHHH--------hCCCCC-cccChHHHHHHCC
Confidence 333221 22 34699999887 56999999999999999999862 221100 1355899999999
Q ss_pred CeeeecCCCCCC-CCCHHHHHHHHHcccCCCCCCCCCCCCCCCHHHHHHHHcHHHHHhcccC
Q 008063 474 ALLALGSDWPVA-DINPLCAIRTAMKRIPPGWDNAWIPSERISLTDALIAHTLSAARACFLE 534 (579)
Q Consensus 474 i~v~~gsD~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~npA~~lgl~ 534 (579)
++++++||.+.. ..++..+++.+... .++++++ +..++.|++++..+.
T Consensus 270 v~V~l~TDdp~~~~~~l~~e~~~a~~~------------~~l~~~~-l~~l~~nsi~~sf~~ 318 (326)
T 3pao_A 270 VKVTVNSDDPAYFGGYVTENFHALQQS------------LGMTEEQ-ARRLAQNSLDARLVK 318 (326)
T ss_dssp CCEEECCBSHHHHTCCHHHHHHHHHHH------------HCCCHHH-HHHHHHHHHHTCC--
T ss_pred CeEEEeCCCcccCCCCHHHHHHHHHHH------------cCCCHHH-HHHHHHHHHHHHHhc
Confidence 999999997643 34888888877653 2589999 577779999987664
|
| >2ob3_A Parathion hydrolase; metalloenzyme, TIM barrel, nerve agents; HET: KCX BTB; 1.04A {Brevundimonas diminuta} PDB: 1psc_A* 1jgm_A* 3cak_A* 1ez2_A* 1eyw_A* 1hzy_A 1i0b_A 1i0d_A 1p6b_A* 1p6c_A* 2oql_A* 2o4q_A* 3cs2_A* 3e3h_A* 1qw7_A* 1dpm_A* 2o4m_A* 1pta_A 3c86_A* 2d2j_A ... | Back alignment and structure |
|---|
Probab=98.60 E-value=1.7e-06 Score=86.94 Aligned_cols=151 Identities=12% Similarity=0.113 Sum_probs=91.3
Q ss_pred HHHHHHHHHHHHCCCeEEEEec--chHHHHHHHHHHHHHHHhcCCCCCCceEeecc-CCChhhHHHHhhCCcEEEecc--
Q 008063 366 ESLLSMTMASDKSGLQVAIHAI--GDRANDLVLDMYKSVVVTTGKRDQRFRIEHAQ-HLASGTAARFGDQGIVASMQP-- 440 (579)
Q Consensus 366 ~~l~~~~~~a~~~g~~i~iH~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~i~H~~-~~~~~~~~~~~~~~i~~~~~p-- 440 (579)
+.+++.+++|++.|+|+.+|+. +..+. ..++.+++ .+....+..+.||. ..+.+...++.+.|..++..-
T Consensus 148 ~~f~~q~~lA~~~glPv~iH~~~~~r~a~-e~l~iL~~----~g~~~~~~~i~H~f~~~~~e~a~~~~~~G~~i~~~~~G 222 (330)
T 2ob3_A 148 LVLKAAARASLATGVPVTTHTAASQRDGE-QQAAIFES----EGLSPSRVCIGHSDDTDDLSYLTALAARGYLIGLDHIP 222 (330)
T ss_dssp HHHHHHHHHHHHHCCCEEEECCGGGTHHH-HHHHHHHH----TTCCGGGEEECSGGGCCCHHHHHHHHHTTCEEEECCTT
T ss_pred HHHHHHHHHHHHhCCeEEEECCCCCCCHH-HHHHHHHH----cCcCcccEEEeCCCCCCCHHHHHHHHhCCCEEEeCCCc
Confidence 4478889999999999999994 33333 44444433 23222234689998 578899999999999888762
Q ss_pred cccccch--h-HHHH-hhChhhhhhhhhhHHHHHHCC--CeeeecCCCCC-CCCC----HHH-----------HHHHHHc
Q 008063 441 QHLLDDA--D-SARK-KLGVDRAERESYLFQSLLANN--ALLALGSDWPV-ADIN----PLC-----------AIRTAMK 498 (579)
Q Consensus 441 ~~~~~~~--~-~~~~-~l~~~~~~~~~~~l~~l~~~G--i~v~~gsD~~~-~~~~----~~~-----------~~~~~~~ 498 (579)
....... + ...+ ...+. . +....++.+.+.+ -++.+.||.+. ..+. ... .+...+.
T Consensus 223 ~~tf~~~~~~~~~~~~~~~~~-~-~~~~~l~~~~~~~p~drilleTD~p~~l~~~~~~~g~~~~~n~pn~~~~~~~~~ia 300 (330)
T 2ob3_A 223 YSAIGLEDNASASALLGIRSW-Q-TRALLIKALIDQGYMKQILVSNDWTFGFSSYVTNIMDVMDRVNPDGMAFIPLRVIP 300 (330)
T ss_dssp CCCTTCTTCHHHHHHHCSSCH-H-HHHHHHHHHHHTTCGGGEEECCCCCSEECSSSTTHHHHHHHHCTTGGGHHHHTHHH
T ss_pred cccccccccccccccccCCCH-H-HHHHHHHHHHHhCCCCeEEEeCCCCCCcccccccCCCcccccCCCCcchHHHHHHH
Confidence 1111000 0 0000 00000 0 2223477888888 57899999875 2221 000 0111111
Q ss_pred ccCCCCCCCCCCCCCCCHHHHHHHHcHHHHHhcc
Q 008063 499 RIPPGWDNAWIPSERISLTDALIAHTLSAARACF 532 (579)
Q Consensus 499 ~~~~~~~~~~~~~~~ls~~~al~~~T~npA~~lg 532 (579)
.. .+.|++++++.++.|.||+++|+
T Consensus 301 ~l---------~~~G~~~eev~~~~t~N~~rlf~ 325 (330)
T 2ob3_A 301 FL---------REKGVPQETLAGITVTNPARFLS 325 (330)
T ss_dssp HH---------HHTTCCHHHHHHHHTHHHHHHHS
T ss_pred HH---------HHcCCCHHHHHHHHHHHHHHHhc
Confidence 11 12569999999999999999997
|
| >1zzm_A Putative deoxyribonuclease YJJV; hydrolaze, zinc, PEG, structural genomics, PSI; HET: P33; 1.80A {Escherichia coli} SCOP: c.1.9.12 | Back alignment and structure |
|---|
Probab=98.52 E-value=3.1e-06 Score=81.98 Aligned_cols=135 Identities=16% Similarity=0.051 Sum_probs=86.5
Q ss_pred HHHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhcCCCCCCceEeeccCCChhhHHHHhhCCcEEEecccccc
Q 008063 365 LESLLSMTMASDKSGLQVAIHAIGDRANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLASGTAARFGDQGIVASMQPQHLL 444 (579)
Q Consensus 365 ~~~l~~~~~~a~~~g~~i~iH~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~H~~~~~~~~~~~~~~~~i~~~~~p~~~~ 444 (579)
.+.+.+.++.|.+.|+|+.+|+... ...+++.+++. +. . ...+.|+...+.+.++++.+.|+.+++.+....
T Consensus 113 ~~~f~~~~~~a~~~~~Pv~iH~~~a--~~~~~~il~~~----~~-~-~~~i~H~~~g~~~~~~~~~~~g~~i~~~g~~~~ 184 (259)
T 1zzm_A 113 QWLLDEQLKLAKRYDLPVILHSRRT--HDKLAMHLKRH----DL-P-RTGVVHGFSGSLQQAERFVQLGYKIGVGGTITY 184 (259)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEESC--HHHHHHHHHHH----CC-T-TCEEETTCCSCHHHHHHHHHTTCEEEECGGGGC
T ss_pred HHHHHHHHHHHHHhCCcEEEEeccc--HHHHHHHHHhc----CC-C-CCEEEEcCCCCHHHHHHHHHCCCEEEECceeec
Confidence 3568889999999999999999642 23444444332 22 1 234569988788888888889999988754321
Q ss_pred cchhHHHHhhChhhhhhhhhhHHHHHHC-C-CeeeecCCCCCCCCCH----------HHHHHHHHcccCCCCCCCCCCCC
Q 008063 445 DDADSARKKLGVDRAERESYLFQSLLAN-N-ALLALGSDWPVADINP----------LCAIRTAMKRIPPGWDNAWIPSE 512 (579)
Q Consensus 445 ~~~~~~~~~l~~~~~~~~~~~l~~l~~~-G-i~v~~gsD~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~ 512 (579)
+....++.+.+. + -++.++||.|...+.+ .......+. ...
T Consensus 185 ----------------~~~~~~~~~~~~~~~dril~eTD~P~~~p~~~~g~~~~p~~l~~~~~~la-----------~~~ 237 (259)
T 1zzm_A 185 ----------------PRASKTRDVIAKLPLASLLLETDAPDMPLNGFQGQPNRPEQAARVFAVLC-----------ELR 237 (259)
T ss_dssp ----------------TTTCSHHHHHHHSCGGGEEECCCBTSSCCTTCTTSCCCGGGHHHHHHHHH-----------HHC
T ss_pred ----------------cccHHHHHHHHhCCHHHEEEecCCCCccCCCCCCCCCcHHHHHHHHHHHH-----------HHH
Confidence 001123344443 2 3689999998653221 111111111 123
Q ss_pred CCCHHHHHHHHcHHHHHhcccC
Q 008063 513 RISLTDALIAHTLSAARACFLE 534 (579)
Q Consensus 513 ~ls~~~al~~~T~npA~~lgl~ 534 (579)
+++.+++.+..|.|++++++++
T Consensus 238 g~~~e~~~~~~~~Na~rl~~l~ 259 (259)
T 1zzm_A 238 REPADEIAQALLNNTYTLFNVP 259 (259)
T ss_dssp SSCHHHHHHHHHHHHHHHHCCC
T ss_pred CcCHHHHHHHHHHHHHHHhCcC
Confidence 5999999999999999999863
|
| >1yix_A Deoxyribonuclease YCFH; TIM barrel, zinc ION, NEW YORK SGX center for structural genomics, nysgxrc; 1.90A {Escherichia coli} SCOP: c.1.9.12 | Back alignment and structure |
|---|
Probab=98.42 E-value=3.7e-06 Score=81.66 Aligned_cols=137 Identities=15% Similarity=0.106 Sum_probs=88.2
Q ss_pred HHHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhcCCCCCCceEeeccCCChhhHHHHhhCCcEEEecccccc
Q 008063 365 LESLLSMTMASDKSGLQVAIHAIGDRANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLASGTAARFGDQGIVASMQPQHLL 444 (579)
Q Consensus 365 ~~~l~~~~~~a~~~g~~i~iH~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~H~~~~~~~~~~~~~~~~i~~~~~p~~~~ 444 (579)
.+.+.+.++.|.+.|+++.+|+... ....++.+++ .+....+. +.|+...+.+.++.+.+.|+.+.++.....
T Consensus 110 ~~~~~~~~~~a~~~~~pv~iH~~~~--~~~~~~~l~~----~~~p~~~~-v~H~~~~~~~~~~~~~~~g~~~~~sg~~~~ 182 (265)
T 1yix_A 110 QESFIHHIQIGRELNKPVIVHTRDA--RADTLAILRE----EKVTDCGG-VLHCFTEDRETAGKLLDLGFYISFSGIVTF 182 (265)
T ss_dssp HHHHHHHHHHHHHHTCCEEEEEESC--HHHHHHHHHH----TTGGGTCE-EETTCCSCHHHHHHHHTTTCEEEECGGGGS
T ss_pred HHHHHHHHHHHHHhCCCEEEEecCc--hHHHHHHHHh----cCCCCCCE-EEEcCCCCHHHHHHHHHCCcEEEECCcccc
Confidence 4568889999999999999999633 2334443333 22122233 459988888888999888999988864322
Q ss_pred cchhHHHHhhChhhhhhhhhhHHHHHHC-C-CeeeecCCCCCCCCCH----------HHHHHHHHcccCCCCCCCCCCCC
Q 008063 445 DDADSARKKLGVDRAERESYLFQSLLAN-N-ALLALGSDWPVADINP----------LCAIRTAMKRIPPGWDNAWIPSE 512 (579)
Q Consensus 445 ~~~~~~~~~l~~~~~~~~~~~l~~l~~~-G-i~v~~gsD~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~ 512 (579)
. ....++.+.+. + -++.+|||+|...+.+ +......+.. ..
T Consensus 183 ~----------------~~~~~~~~~~~~~~drll~~TD~P~~~~~~~~g~~~~~~~l~~~~~~l~~-----------~~ 235 (265)
T 1yix_A 183 R----------------NAEQLRDAARYVPLDRLLVETDSPYLAPVPHRGKENQPAMVRDVAEYMAV-----------LK 235 (265)
T ss_dssp T----------------TCHHHHHHHHHSCGGGEEECCCBTSCCCTTCTTSCCCGGGHHHHHHHHHH-----------HH
T ss_pred C----------------chHHHHHHHHhCChHHEEEecCCCCCCCcccCCCCCchHHHHHHHHHHHH-----------Hh
Confidence 1 01123444443 4 3789999998653211 1111112211 12
Q ss_pred CCCHHHHHHHHcHHHHHhcccCC
Q 008063 513 RISLTDALIAHTLSAARACFLEN 535 (579)
Q Consensus 513 ~ls~~~al~~~T~npA~~lgl~~ 535 (579)
+++.+++.++.+.|+++++|++.
T Consensus 236 ~~~~~~~~~i~~~Na~rl~~l~~ 258 (265)
T 1yix_A 236 GVAVEELAQVTTDNFARLFHIDA 258 (265)
T ss_dssp TSCHHHHHHHHHHHHHHHTTCCG
T ss_pred CcCHHHHHHHHHHHHHHHhCcCh
Confidence 48999999999999999999853
|
| >1xwy_A DNAse TATD, deoxyribonuclease TATD; TIM barrael, zinc ION, structural genomics, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.1.9.12 | Back alignment and structure |
|---|
Probab=98.42 E-value=3.5e-06 Score=81.87 Aligned_cols=135 Identities=10% Similarity=0.008 Sum_probs=85.6
Q ss_pred HHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhcCCCCCCceEeeccCCChhhHHHHhhCCcEEEeccccc-c
Q 008063 366 ESLLSMTMASDKSGLQVAIHAIGDRANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLASGTAARFGDQGIVASMQPQHL-L 444 (579)
Q Consensus 366 ~~l~~~~~~a~~~g~~i~iH~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~H~~~~~~~~~~~~~~~~i~~~~~p~~~-~ 444 (579)
+.+.+.++.|.+.|+++.+|+... ....++.+++ .+....+. +.|+...+.+.++.+.+.|+.+++..... .
T Consensus 112 ~~f~~~l~~a~~~~lpv~iH~~~a--~~~~~~il~~----~~~~~~~~-v~H~~~g~~~~~~~~~~~g~yi~~~g~~~~~ 184 (264)
T 1xwy_A 112 RAFVAQLRIAADLNMPVFMHCRDA--HERFMTLLEP----WLDKLPGA-VLHCFTGTREEMQACVAHGIYIGITGWVCDE 184 (264)
T ss_dssp HHHHHHHHHHHHHTCCEEEEEESC--HHHHHHHHGG----GGGGSSCE-EECSCCCCHHHHHHHHHTTCEEEECGGGGCT
T ss_pred HHHHHHHHHHHHhCCcEEEEcCCc--hHHHHHHHHh----cCCCCCcE-EEEccCCCHHHHHHHHHCCeEEEECccccCC
Confidence 458889999999999999999632 2333333332 22212233 55988778888888888999988875322 1
Q ss_pred cchhHHHHhhChhhhhhhhhhHHHHHHC-CC-eeeecCCCCCCCCC--------------HHHHHHHHHcccCCCCCCCC
Q 008063 445 DDADSARKKLGVDRAERESYLFQSLLAN-NA-LLALGSDWPVADIN--------------PLCAIRTAMKRIPPGWDNAW 508 (579)
Q Consensus 445 ~~~~~~~~~l~~~~~~~~~~~l~~l~~~-Gi-~v~~gsD~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~ 508 (579)
+....++.+.+. +. ++.++||+|...+. .+......+.
T Consensus 185 ----------------~~~~~l~~~~~~~~~drll~eTD~P~~~~~~~~~~~~g~~n~p~~~~~~~~~~a---------- 238 (264)
T 1xwy_A 185 ----------------RRGLELRELLPLIPAEKLLIETDAPYLLPRDLTPKPSSRRNEPAHLPHILQRIA---------- 238 (264)
T ss_dssp ----------------TTSHHHHHHGGGSCGGGEEECCCTTSCCCTTCTTCCCSSCCCGGGHHHHHHHHH----------
T ss_pred ----------------cCcHHHHHHHHhCCHHHEEEecCCCCcCccccccccCCCCCchHHHHHHHHHHH----------
Confidence 001123444443 22 69999999864322 1111111111
Q ss_pred CCCCCCCHHHHHHHHcHHHHHhcccC
Q 008063 509 IPSERISLTDALIAHTLSAARACFLE 534 (579)
Q Consensus 509 ~~~~~ls~~~al~~~T~npA~~lgl~ 534 (579)
...+++.+++.+..+.|+++++|++
T Consensus 239 -~~~g~~~e~~~~~~~~Na~rl~~l~ 263 (264)
T 1xwy_A 239 -HWRGEDAAWLAATTDANVKTLFGIA 263 (264)
T ss_dssp -HHHTCCHHHHHHHHHHHHHHHHCCC
T ss_pred -HHHCcCHHHHHHHHHHHHHHHhCcc
Confidence 1125899999999999999999874
|
| >2vc7_A Aryldialkylphosphatase; phosphotriesterase, promiscuous activities, enzyme evolution, hyperthermophilic, lactonase, hydrolase; HET: KCX GOL HT5; 2.05A {Sulfolobus solfataricus} PDB: 2vc5_A* | Back alignment and structure |
|---|
Probab=98.41 E-value=1.3e-05 Score=79.98 Aligned_cols=143 Identities=8% Similarity=0.046 Sum_probs=87.4
Q ss_pred HHHHHHHHHHHHCCCeEEEEec--chHHHHHHHHHHHHHHHhcCCCCCCceEeeccC-CChhhHHHHhhCCcEEEecccc
Q 008063 366 ESLLSMTMASDKSGLQVAIHAI--GDRANDLVLDMYKSVVVTTGKRDQRFRIEHAQH-LASGTAARFGDQGIVASMQPQH 442 (579)
Q Consensus 366 ~~l~~~~~~a~~~g~~i~iH~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~i~H~~~-~~~~~~~~~~~~~i~~~~~p~~ 442 (579)
+.+++.++.|++.|+++.+|+. +... ...++.+++ .+....+..+.|+.. .+.+.+.++.+.|..+.++-..
T Consensus 151 ~~~~~~~~lA~~~~~pv~iH~~~~~~~~-~~~~~~l~~----~~~~~~~~~i~H~~~~~~~~~~~~~~~~G~~i~~~~~~ 225 (314)
T 2vc7_A 151 KVIRAAAIANKETKVPIITHSNAHNNTG-LEQQRILTE----EGVDPGKILIGHLGDTDNIDYIKKIADKGSFIGLDRYG 225 (314)
T ss_dssp HHHHHHHHHHHHHCCCEEEECCTTTTHH-HHHHHHHHH----TTCCGGGEEETTGGGCCCHHHHHHHHHTTCEEEECCTT
T ss_pred HHHHHHHHHHHHHCCEEEEeCCCcccCh-HHHHHHHHH----cCCCcccEEEECCCCCCCHHHHHHHHHcCCEEEEeCCC
Confidence 4577889999999999999995 2332 344444332 343334567899986 5688899999999988877321
Q ss_pred cccchhHHHHhhChhhhhhhhhhHHHHHHCC--CeeeecCCCCCCC------CCHHH----------HHHHHHcccCCCC
Q 008063 443 LLDDADSARKKLGVDRAERESYLFQSLLANN--ALLALGSDWPVAD------INPLC----------AIRTAMKRIPPGW 504 (579)
Q Consensus 443 ~~~~~~~~~~~l~~~~~~~~~~~l~~l~~~G--i~v~~gsD~~~~~------~~~~~----------~~~~~~~~~~~~~ 504 (579)
.... ... . +....+..+.+.| -++.++||++..+ +.+.. .+...+...
T Consensus 226 ~~~~-------~~~--~-~~~~~i~~~~~~g~~drilleTD~~~~~~~~~~~p~~~~~g~~~~~~~~~~~~~~~~l---- 291 (314)
T 2vc7_A 226 LDLF-------LPV--D-KRNETTLRLIKDGYSDKIMISHDYCCTIDWGTAKPEYKPKLAPRWSITLIFEDTIPFL---- 291 (314)
T ss_dssp CTTT-------SCH--H-HHHHHHHHHHHTTCTTTEEECCCCBSSBCCGGGCTTSHHHHCTTCSTTHHHHTHHHHH----
T ss_pred cccC-------CCH--H-HHHHHHHHHHHcCCCCeEEEcCCccccccccccchhhhhcCCCCcCHHHHHHHHHHHH----
Confidence 1100 000 0 2223456677763 4789999986432 01100 010111000
Q ss_pred CCCCCCCCCCCHHHHHHHHcHHHHHhcc
Q 008063 505 DNAWIPSERISLTDALIAHTLSAARACF 532 (579)
Q Consensus 505 ~~~~~~~~~ls~~~al~~~T~npA~~lg 532 (579)
...|++.+++.++.|.||+++++
T Consensus 292 -----~~~g~~~e~~~~~~~~N~~rlf~ 314 (314)
T 2vc7_A 292 -----KRNGVNEEVIATIFKENPKKFFS 314 (314)
T ss_dssp -----HHTTCCHHHHHHHHTHHHHHHTC
T ss_pred -----HHcCCCHHHHHHHHHHCHHHHhC
Confidence 12468999999999999999875
|
| >1bf6_A Phosphotriesterase homology protein; hypothetical protein; 1.70A {Escherichia coli} SCOP: c.1.9.3 | Back alignment and structure |
|---|
Probab=98.37 E-value=1.3e-05 Score=78.92 Aligned_cols=141 Identities=11% Similarity=0.080 Sum_probs=87.9
Q ss_pred HHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhcCCCCCCceEeeccC-CChhhHHHHhhCCcEEEecccccc
Q 008063 366 ESLLSMTMASDKSGLQVAIHAIGDRANDLVLDMYKSVVVTTGKRDQRFRIEHAQH-LASGTAARFGDQGIVASMQPQHLL 444 (579)
Q Consensus 366 ~~l~~~~~~a~~~g~~i~iH~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~H~~~-~~~~~~~~~~~~~i~~~~~p~~~~ 444 (579)
+.+++.++.|++.|+++.+|+.........++.+ ...+....+..+.|+.+ .+.+.+.++.+.|..+........
T Consensus 138 ~~~~~~~~~a~~~~~pv~iH~~~~~~~~~~~~~l----~~~~~~~~~~~i~H~~~~~~~~~~~~~~~~G~~i~~~~~~~~ 213 (291)
T 1bf6_A 138 KVFIAAALAHNQTGRPISTHTSFSTMGLEQLALL----QAHGVDLSRVTVGHCDLKDNLDNILKMIDLGAYVQFDTIGKN 213 (291)
T ss_dssp HHHHHHHHHHHHHCCCEEEECGGGCSHHHHHHHH----HHTTCCGGGEEECCCCSSCCHHHHHHHHHTTCEEEECCTTCT
T ss_pred HHHHHHHHHHHHHCCeEEEeCCCCCChHHHHHHH----HHcCCCchhEEEECCCCCCCHHHHHHHHHCCCEEEEccCccc
Confidence 4688899999999999999994211111333333 22343344668999965 677888899999988877633100
Q ss_pred cchhHHHHhhChhhhhhhhhhHHHHHHCC--CeeeecCCCCCCCC---------CH-HHHHHHHHcccCCCCCCCCCCCC
Q 008063 445 DDADSARKKLGVDRAERESYLFQSLLANN--ALLALGSDWPVADI---------NP-LCAIRTAMKRIPPGWDNAWIPSE 512 (579)
Q Consensus 445 ~~~~~~~~~l~~~~~~~~~~~l~~l~~~G--i~v~~gsD~~~~~~---------~~-~~~~~~~~~~~~~~~~~~~~~~~ 512 (579)
. ..+ .. .....++.+.+.+ -++.++||++..++ .. +......+ ...
T Consensus 214 ~--------~~~-~~-~~~~~~~~~~~~~~~dril~~TD~p~~~~~~~~~~~~~~~~~~~~~~~l------------~~~ 271 (291)
T 1bf6_A 214 S--------YYP-DE-KRIAMLHALRDRGLLNRVMLSMDITRRSHLKANGGYGYDYLLTTFIPQL------------RQS 271 (291)
T ss_dssp T--------TSC-HH-HHHHHHHHHHHTTCGGGEEECCCCCSGGGSGGGTSCCTTHHHHTHHHHH------------HHT
T ss_pred C--------CCC-HH-HHHHHHHHHHHhCCCCeEEEcCCCCCCccchhcCCCCHHHHHHHHHHHH------------HHc
Confidence 0 000 00 1223467788887 37899999875321 11 11111111 123
Q ss_pred CCCHHHHHHHHcHHHHHhcc
Q 008063 513 RISLTDALIAHTLSAARACF 532 (579)
Q Consensus 513 ~ls~~~al~~~T~npA~~lg 532 (579)
|++.+++.++.|.||++++|
T Consensus 272 g~~~~~~~~~~~~N~~rl~~ 291 (291)
T 1bf6_A 272 GFSQADVDVMLRENPSQFFQ 291 (291)
T ss_dssp TCCHHHHHHHHTHHHHHHCC
T ss_pred CCCHHHHHHHHHHhHHHHhC
Confidence 58999999999999999885
|
| >3rcm_A TATD family hydrolase; HET: CIT; 2.05A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=98.27 E-value=1e-05 Score=79.20 Aligned_cols=138 Identities=15% Similarity=0.052 Sum_probs=90.3
Q ss_pred HHHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhcCCCCCCceEeeccCCChhhHHHHhhCCcEEEecccccc
Q 008063 365 LESLLSMTMASDKSGLQVAIHAIGDRANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLASGTAARFGDQGIVASMQPQHLL 444 (579)
Q Consensus 365 ~~~l~~~~~~a~~~g~~i~iH~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~H~~~~~~~~~~~~~~~~i~~~~~p~~~~ 444 (579)
.+.+.+.+++|++.++|+.+|+... ....++.+++... . ..-.+.|+...+.++++++.+.|..+++......
T Consensus 113 ~~~F~~ql~lA~e~~lPv~iH~r~a--~~~~l~il~~~~~----~-~~~~V~H~fsG~~e~a~~~l~~G~yis~~g~i~~ 185 (287)
T 3rcm_A 113 EKALEAQLTLAAQLRLPVFLHERDA--SERLLAILKDYRD----H-LTGAVVHCFTGEREALFAYLDLDLHIGITGWICD 185 (287)
T ss_dssp HHHHHHHHHHHHHHTCCEEEEEESC--HHHHHHHHHTTGG----G-CSCEEECSCCCCHHHHHHHHHTTCEEEECGGGGC
T ss_pred HHHHHHHHHHHHHhCCCEEEEcCCc--HHHHHHHHHHcCC----C-CCeEEEEeCCCCHHHHHHHHHCCcEEEECchhcc
Confidence 4568899999999999999999743 2444444443211 1 1225679988899999999999999988743221
Q ss_pred cchhHHHHhhChhhhhhhhhhHHHHHHC-CC-eeeecCCCCCCCCCHH--------------HHHHHHHcccCCCCCCCC
Q 008063 445 DDADSARKKLGVDRAERESYLFQSLLAN-NA-LLALGSDWPVADINPL--------------CAIRTAMKRIPPGWDNAW 508 (579)
Q Consensus 445 ~~~~~~~~~l~~~~~~~~~~~l~~l~~~-Gi-~v~~gsD~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~ 508 (579)
. +....++.+.+. +. ++.+.||.|...+.++ ......+.
T Consensus 186 ~---------------k~~~~l~~~v~~ip~drlLlETD~P~l~p~~~~~~~rg~~n~P~~l~~v~~~lA---------- 240 (287)
T 3rcm_A 186 E---------------RRGTHLHPLVGNIPEGRLMLESDAPYLLPRSLRPKPKSGRNEPAFLPEVLREVA---------- 240 (287)
T ss_dssp T---------------TTCGGGHHHHTTSCTTSEEECCCTTSCCCTTCSSCCTTCCCCGGGHHHHHHHHH----------
T ss_pred c---------------cCHHHHHHHHHhcCCccEEEeccCCccCccccccccCCCcCCHHHHHHHHHHHH----------
Confidence 0 001123444443 32 6899999886543221 11111111
Q ss_pred CCCCCCCHHHHHHHHcHHHHHhcccCC
Q 008063 509 IPSERISLTDALIAHTLSAARACFLEN 535 (579)
Q Consensus 509 ~~~~~ls~~~al~~~T~npA~~lgl~~ 535 (579)
...|++++++.+..|.|+.+++|++.
T Consensus 241 -~~~g~s~eev~~~~~~N~~rlf~l~~ 266 (287)
T 3rcm_A 241 -LHRGESAEHTAAHTTATARDFFQLPA 266 (287)
T ss_dssp -HHHTSCHHHHHHHHHHHHHHHTTCCC
T ss_pred -HHhCcCHHHHHHHHHHHHHHHHCCCh
Confidence 12358999999999999999999865
|
| >2y1h_A Putative deoxyribonuclease tatdn3; hydrolase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.27 E-value=3.6e-05 Score=74.99 Aligned_cols=133 Identities=15% Similarity=0.159 Sum_probs=87.0
Q ss_pred HHHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhcCCCCCCceEeeccCCChhhHHHHhhCCcEEEecccccc
Q 008063 365 LESLLSMTMASDKSGLQVAIHAIGDRANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLASGTAARFGDQGIVASMQPQHLL 444 (579)
Q Consensus 365 ~~~l~~~~~~a~~~g~~i~iH~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~H~~~~~~~~~~~~~~~~i~~~~~p~~~~ 444 (579)
.+.+++.+++|.+.|+|+.+|+... ....++.+++ .+ ..+ .+.|+...+.+.++++.+.|+.+++.+....
T Consensus 125 ~~~f~~~~~la~~~~lPv~iH~~~a--~~~~~~il~~----~~--~~~-~v~H~~~g~~~~~~~~~~~g~~i~~~g~~~~ 195 (272)
T 2y1h_A 125 RQVLIRQIQLAKRLNLPVNVHSRSA--GRPTINLLQE----QG--AEK-VLLHAFDGRPSVAMEGVRAGYFFSIPPSIIR 195 (272)
T ss_dssp HHHHHHHHHHHHHHTCCEEEECTTC--HHHHHHHHHH----TT--CCS-EEEETCCSCHHHHHHHHHTTCEEEECGGGGT
T ss_pred HHHHHHHHHHHHHhCCcEEEEeCCc--HHHHHHHHHh----CC--CCC-EEEEccCCCHHHHHHHHHCCCEEEECCcccC
Confidence 3467899999999999999999632 2333443332 33 123 4559988788889999999999988865421
Q ss_pred cchhHHHHhhChhhhhhhhhhHHHHHHCC--CeeeecCCCCCCCCC--------HHHHHHHHHcccCCCCCCCCCCCCCC
Q 008063 445 DDADSARKKLGVDRAERESYLFQSLLANN--ALLALGSDWPVADIN--------PLCAIRTAMKRIPPGWDNAWIPSERI 514 (579)
Q Consensus 445 ~~~~~~~~~l~~~~~~~~~~~l~~l~~~G--i~v~~gsD~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~l 514 (579)
+ + .++.+.+.. -++.++||.|...+. .+......+.. ..|+
T Consensus 196 ----------~-----~---~~~~~~~~~~~drll~eTD~P~~~p~~g~~~~p~~l~~~~~~la~-----------~~g~ 246 (272)
T 2y1h_A 196 ----------S-----G---QKQKLVKQLPLTSICLETDSPALGPEKQVRNEPWNISISAEYIAQ-----------VKGI 246 (272)
T ss_dssp ----------C-----H---HHHHHHHHSCGGGEEECCCTTSSCSSTTSCCCGGGHHHHHHHHHH-----------HHTS
T ss_pred ----------c-----H---HHHHHHHhCCHHHEEEecCCCCCCCCCCCcCcHHHHHHHHHHHHH-----------HHCc
Confidence 1 0 133444432 268999999854321 11122222211 1258
Q ss_pred CHHHHHHHHcHHHHHhcccCC
Q 008063 515 SLTDALIAHTLSAARACFLEN 535 (579)
Q Consensus 515 s~~~al~~~T~npA~~lgl~~ 535 (579)
+.+++.+..+.|+++++++++
T Consensus 247 ~~e~~~~~~~~N~~~l~~~~~ 267 (272)
T 2y1h_A 247 SVEEVIEVTTQNALKLFPKLR 267 (272)
T ss_dssp CHHHHHHHHHHHHHHHSTTHH
T ss_pred CHHHHHHHHHHHHHHHHHhHH
Confidence 999999999999999999864
|
| >2gzx_A Putative TATD related DNAse; deoxyribonuclease, NESG, ZR237, structural GENO PSI, protein structure initiative; 2.20A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=98.13 E-value=0.00013 Score=70.51 Aligned_cols=138 Identities=12% Similarity=0.071 Sum_probs=83.9
Q ss_pred CHHHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhcCCCCCCceEeeccCCChhhHHHHhh-CCcEEEecccc
Q 008063 364 ELESLLSMTMASDKSGLQVAIHAIGDRANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLASGTAARFGD-QGIVASMQPQH 442 (579)
Q Consensus 364 ~~~~l~~~~~~a~~~g~~i~iH~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~H~~~~~~~~~~~~~~-~~i~~~~~p~~ 442 (579)
..+.+...++.+.+.|+++.+|+.... ..+++.++ .++....+. +.|+...+.+.+..+.+ .|+.+.+....
T Consensus 107 ~~~~~~~~~~~a~~~~~pv~iH~~~~~--~~~~~~l~----~~p~~~~~~-i~H~~~g~~~~~~~~l~~~~~y~~~sg~~ 179 (265)
T 2gzx_A 107 QKEVFRKQIALAKRLKLPIIIHNREAT--QDCIDILL----EEHAEEVGG-IMHSFSGSPEIADIVTNKLNFYISLGGPV 179 (265)
T ss_dssp HHHHHHHHHHHHHHHTCCEEEEEESCH--HHHHHHHH----HTTGGGTCE-EETTCCSCHHHHHHHHHTSCCEEEECGGG
T ss_pred HHHHHHHHHHHHHHcCCcEEEEecccH--HHHHHHHH----hcCCCCCcE-EEEcCCCCHHHHHHHHHHCCceEEeccee
Confidence 346689999999999999999996432 33333333 333212344 56777666666666666 78888877443
Q ss_pred cccchhHHHHhhChhhhhhhhhhHHHHHH-CCC-eeeecCCCCCCCCC----------HHHHHHHHHcccCCCCCCCCCC
Q 008063 443 LLDDADSARKKLGVDRAERESYLFQSLLA-NNA-LLALGSDWPVADIN----------PLCAIRTAMKRIPPGWDNAWIP 510 (579)
Q Consensus 443 ~~~~~~~~~~~l~~~~~~~~~~~l~~l~~-~Gi-~v~~gsD~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~ 510 (579)
.... ...++.+.+ .|. ++.+|||+|...+. ........+..
T Consensus 180 ~~~~----------------~~~~~~~i~~~~~dril~gSD~P~~~~~~~~g~~~~~~~~~~~~~~l~~----------- 232 (265)
T 2gzx_A 180 TFKN----------------AKQPKEVAKHVSMERLLVETDAPYLSPHPYRGKRNEPARVTLVAEQIAE----------- 232 (265)
T ss_dssp GCSS----------------CCHHHHHHHHSCTTTEEECCCTTSCCCTTCTTSCCCGGGHHHHHHHHHH-----------
T ss_pred ecCC----------------cHHHHHHHHhCChhhEEEccCCCCCCCcccCCCCCChHHHHHHHHHHHH-----------
Confidence 2210 012344444 343 79999999865432 11122222211
Q ss_pred CCCCCHHHHHHHHcHHHHHhcccCC
Q 008063 511 SERISLTDALIAHTLSAARACFLEN 535 (579)
Q Consensus 511 ~~~ls~~~al~~~T~npA~~lgl~~ 535 (579)
..+++.++.-+..+.|+++++++..
T Consensus 233 ~~~~~~~~~~~i~~~Na~rl~~~~~ 257 (265)
T 2gzx_A 233 LKGLSYEEVCEQTTKNAEKLFNLNS 257 (265)
T ss_dssp HTTCCHHHHHHHHHHHHHHHHC---
T ss_pred HhCCCHHHHHHHHHHHHHHHhCCch
Confidence 1358999999999999999999864
|
| >4gxw_A Adenosine deaminase; amidohydrolase, COG1816, EFI, structural genomics, hydrolase; 1.30A {Burkholderia ambifaria} | Back alignment and structure |
|---|
Probab=98.12 E-value=3e-05 Score=78.76 Aligned_cols=244 Identities=14% Similarity=0.063 Sum_probs=140.8
Q ss_pred CCHHHHHHHHHHHHHHHHhcCccEEEeCCc---C--CCCCccccchHHHHHHHHHHhhcCCCeeEEEEccC-ccchhhHH
Q 008063 240 VSVDERREALLRASNLALSRGVTTVVDFGR---Y--YPGESVQLSWEDFADVYQWASYSEKMKIRVCLFFP-LETWSSLA 313 (579)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~Git~v~~~~~---~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~-~~~~~~~~ 313 (579)
-++++++......++.+.+.||.-+--... . ..|.+....++...+.++.....-.+.+++..... ..+.+...
T Consensus 89 ~t~ed~~r~a~e~~ed~a~dgV~Y~Eirf~P~~~~~~~Gl~~~~vv~av~~g~~~a~~~~gi~~rlI~~~~R~~~~e~a~ 168 (380)
T 4gxw_A 89 TRPDDLRRIAYEYLEDAAAHNVRHAEFFWNPTGTVRVSGIPYADAQAAIVTGMRDAARDFGIGARLIPSIDREQDPDEAV 168 (380)
T ss_dssp CSHHHHHHHHHHHHHHHHTTTEEEEEEEECHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHCCEEEEEEEEETTSCHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHCCCeEEEEEcCHHHhccccCCCHHHHHHHHHHHHHHHHHhcCCcEEEEEeecCCCCHHHHH
Confidence 367888888899999999999987653210 0 01222222222333333444433345555544221 12222333
Q ss_pred HHHHhcCCCCCCceEEceEEEEEcCccCCCcccccCCCCCCCCCCcccCCCHHHHHHHHHHHHHCCCeEEEEecchH-HH
Q 008063 314 DLINKTGHVLSDWVYLGGVKAFADGSLGSNSALFHEPYADEPHNYGLQVMELESLLSMTMASDKSGLQVAIHAIGDR-AN 392 (579)
Q Consensus 314 ~~~~~~~~~~~~~~~~~g~k~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~i~iH~~g~~-~~ 392 (579)
+..........+. ..|+.+. |. ..+ .++......++.|++.|+++++|+-+.. ..
T Consensus 169 ~~~~~a~~~~~~~--VvG~dL~--g~-----------E~~---------~p~~~f~~~f~~ar~~Gl~~t~HAGE~~~p~ 224 (380)
T 4gxw_A 169 AIVDWMKANRADE--VAGIGID--YR-----------END---------RPPELFWKAYRDARAAGFRTTAHAGEFGMPW 224 (380)
T ss_dssp HHHHHHHHTCCTT--BCEEEEE--SC-----------CTT---------CCGGGGHHHHHHHHHTTCEEEEEESCTTCCH
T ss_pred HHHHHHHHhCCCC--EEEEeec--CC-----------CCC---------CCHHHHHHHHHHHHHcCCCeeeeccccCCch
Confidence 3322221112222 2233322 11 000 2345678889999999999999996432 12
Q ss_pred HHHHHHHHHHHHhcCCCCCCceEeeccCC--ChhhHHHHhhCCcEEEecccccccchhHHHHhhChhhhhhhhhhHHHHH
Q 008063 393 DLVLDMYKSVVVTTGKRDQRFRIEHAQHL--ASGTAARFGDQGIVASMQPQHLLDDADSARKKLGVDRAERESYLFQSLL 470 (579)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~i~H~~~~--~~~~~~~~~~~~i~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~ 470 (579)
+.+.+++. ..+ ...|.|+..+ +++.++++++.+|.+.+||.+|...+ ..+.... -...|++.++
T Consensus 225 ~~i~~al~----~lg----a~RIgHG~~~~~d~~L~~~l~~~~I~lEvCP~SN~~l~-----~v~~~~~-~~~HP~~~l~ 290 (380)
T 4gxw_A 225 RNVETAVD----LLH----VDRVDHGYTIVDNPELCARYAERGIVFTVVPTNSYYLR-----TLPPDQW-AERHPMRKMP 290 (380)
T ss_dssp HHHHHHHH----TSC----CSEEEECGGGGGCHHHHHHHHHHTCEEEECTTCHHHHH-----HSCTTTH-HHHCGGGGTG
T ss_pred HHHHHHHH----HcC----CcccccceeeccChHHHHHHHHhCceeEECCcchhhhc-----ccccccc-cccChHHHHH
Confidence 22222222 122 5689999866 56789999999999999999985211 1111111 1234799999
Q ss_pred HCCCeeeecCCCCCC-CCCHHHHHHHHHcccCCCCCCCCCCCCCCCHHHHHHHHcHHHHHhcccC
Q 008063 471 ANNALLALGSDWPVA-DINPLCAIRTAMKRIPPGWDNAWIPSERISLTDALIAHTLSAARACFLE 534 (579)
Q Consensus 471 ~~Gi~v~~gsD~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~npA~~lgl~ 534 (579)
+.|++++++||.+.. ..++-.+...+.. ..|++.++..++ +.|+.+.-.++
T Consensus 291 ~~Gv~vtinTDDp~~f~t~Ls~Ey~~~~~------------~~gls~~dl~~l-~~nsi~~sF~~ 342 (380)
T 4gxw_A 291 GLGLKIHPNTDDPTLHKVNPSEAWELMFS------------HFGFTIADLKQF-MLNGIDGAWVD 342 (380)
T ss_dssp GGTCEEEECCBSHHHHTCCHHHHHHHHHH------------TSCCCHHHHHHH-HHHHHHHSSSC
T ss_pred HCCCeEEECCCCchhhCCCHHHHHHHHHH------------HhCcCHHHHHHH-HHHHHHHHcCC
Confidence 999999999997632 2455566555443 346999996654 58988877665
|
| >3ovg_A Amidohydrolase; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, NYSGXRC, HAD, PSI; HET: KCX; 2.06A {Mycoplasma synoviae} PDB: 3msr_A* | Back alignment and structure |
|---|
Probab=98.10 E-value=0.00028 Score=71.18 Aligned_cols=160 Identities=12% Similarity=0.047 Sum_probs=102.5
Q ss_pred HHHHHHHHHHHHHCCCeEEEEecch-HHHHHHHHHHHHHHHhcCCCCCCceEeeccC-CChhhHHHHh-hCCcEEEeccc
Q 008063 365 LESLLSMTMASDKSGLQVAIHAIGD-RANDLVLDMYKSVVVTTGKRDQRFRIEHAQH-LASGTAARFG-DQGIVASMQPQ 441 (579)
Q Consensus 365 ~~~l~~~~~~a~~~g~~i~iH~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~i~H~~~-~~~~~~~~~~-~~~i~~~~~p~ 441 (579)
.+.+++.+++|++.|+|+.+|+... .+. ..++.+++ .+....+..+.||.. .+.+..+++. +.|..+...-.
T Consensus 168 ~~~f~aq~~~A~e~glPViiH~r~gr~a~-d~l~iL~e----~g~~~~~vvi~H~~~~~~~~~a~~~l~~~G~yI~f~g~ 242 (363)
T 3ovg_A 168 LKALEVAARTSILTGCPILVHTQLGTMAL-EVAKHLIG----FGANPDKIQISHLNKNPDKYYYEKVIKETGVTLCFDGP 242 (363)
T ss_dssp HHHHHHHHHHHHHHCCCEEEEEETTCSHH-HHHHHHHH----HTCCGGGEEEECGGGSCCHHHHHHHHHHHCCEEEECCT
T ss_pred HHHHHHHHHHHHHhCCEEEEeCCCCCCHH-HHHHHHHh----cCCCCCcEEEEcCCCCCCHHHHHHHHHHCCcEEEECCe
Confidence 3467888999999999999998521 222 44444443 233334567889984 5666667777 78888877632
Q ss_pred ccccchhHHHHhhChhhhhhhhhhHHHHHHCCC--eeeecCCCCCCCCCHHHH-------------HHHHHcccCCCCCC
Q 008063 442 HLLDDADSARKKLGVDRAERESYLFQSLLANNA--LLALGSDWPVADINPLCA-------------IRTAMKRIPPGWDN 506 (579)
Q Consensus 442 ~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~~Gi--~v~~gsD~~~~~~~~~~~-------------~~~~~~~~~~~~~~ 506 (579)
....+ .+.. +....++.+.+.+. ++.+.||++..++-.... .......
T Consensus 243 ~~~~~-------~~~~---~ra~~l~~lv~~~p~drILleTDap~~~~l~~~G~~~g~~~n~p~~l~~~~~~~------- 305 (363)
T 3ovg_A 243 DRVKY-------YPDS---LLAENIKYLVDKGLQKHITLSLDAGRILYQRNYGLTKGKQTFGLAYLFDRFLPL------- 305 (363)
T ss_dssp TCTTT-------CCHH---HHHHHHHHHHHTTCGGGEEECCCCCSGGGSHHHHHHTTEECCCTHHHHHTHHHH-------
T ss_pred ecccc-------CChh---HHHHHHHHHHHhcCCCeEEEeCCCCCCcCCCCCCccCCCCCCCccHHHHHHHHH-------
Confidence 11100 0100 22335778888886 799999998443211111 1111110
Q ss_pred CCCCCCCCCHHHHHHHHcHHHHHhcccCCccccccCCCcccEE
Q 008063 507 AWIPSERISLTDALIAHTLSAARACFLENDVGSLSPGKIADFV 549 (579)
Q Consensus 507 ~~~~~~~ls~~~al~~~T~npA~~lgl~~~~G~I~~G~~ADlv 549 (579)
....|++.+++.++.|.||+++|++.. .+++++||.-+-|
T Consensus 306 --a~~rGis~eei~~it~~Np~rlf~l~~-~~~~~~~~~~~~~ 345 (363)
T 3ovg_A 306 --LKQVGVSKEAIFDILVNNPKRVLAFDE-KRNFDPLKVSKEV 345 (363)
T ss_dssp --HHHHTCCHHHHHHHHTHHHHHHTSCCC-CCCCCGGGSCHHH
T ss_pred --HHHcCCCHHHHHHHHHHHHHHHHCCCC-cCccCcccCCHHH
Confidence 123469999999999999999999976 6999999976544
|
| >2a3l_A AMP deaminase, AMPD; atampd, AT2G38280, adenosine 5'-monophosphate deaminase, COF 5'-phosphate, structural genomics; HET: CF5; 3.34A {Arabidopsis thaliana} SCOP: c.1.9.1 | Back alignment and structure |
|---|
Probab=98.04 E-value=2.4e-06 Score=92.52 Aligned_cols=131 Identities=14% Similarity=0.074 Sum_probs=94.7
Q ss_pred HHHHHHH-CCC---eEEEEecchHHHHHHHHHHHHHHHhcCCCCCCceEeeccCCChhh--HHHHhhCCcEEEecccccc
Q 008063 371 MTMASDK-SGL---QVAIHAIGDRANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLASGT--AARFGDQGIVASMQPQHLL 444 (579)
Q Consensus 371 ~~~~a~~-~g~---~i~iH~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~H~~~~~~~~--~~~~~~~~i~~~~~p~~~~ 444 (579)
.+..+++ .|+ ++++|+.+....+.+.+++ . + ...+.|+..+.+++ ++++++.++.+.+||.+|.
T Consensus 503 ~Ln~ar~~~Gl~~i~~t~HaGE~~~~e~l~~al----L--g----~~RIgHGv~l~edp~Li~lla~~~I~vevCP~SN~ 572 (701)
T 2a3l_A 503 VLNKLRESKGMTTITLRPHSGEAGDIDHLAATF----L--T----CHSIAHGINLRKSPVLQYLYYLAQIGLAMSPLSNN 572 (701)
T ss_dssp HHHHHHTTTTCCCCEECCCCSSSSCTHHHHHHH----H--H----CSSCSCCGGGGGCHHHHHHHHHHTCCEEECHHHHT
T ss_pred HHHHHHHHcCCCCCCcccccCCCCCHHHHHHHh----c--C----CCeEEEEeecccCHHHHHHHHHcCCcEEECccchh
Confidence 3455664 687 8999997554444444442 1 1 22479999988766 8999999999999999986
Q ss_pred cchhHHHHhhChhhhhhhhhhHHHHHHCCCeeeecCCCCCCCC----CHHHHHHHHHcccCCCCCCCCCCCCCCCHHHHH
Q 008063 445 DDADSARKKLGVDRAERESYLFQSLLANNALLALGSDWPVADI----NPLCAIRTAMKRIPPGWDNAWIPSERISLTDAL 520 (579)
Q Consensus 445 ~~~~~~~~~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al 520 (579)
. +... -...|+..|+++|++|++|||.+.... +++.+++.+.... +++..++.
T Consensus 573 k--------l~~~---~~~HPi~~ll~~Gv~VsLgTDdp~~~~~t~~dL~~Ey~~aa~~~------------~ls~~dl~ 629 (701)
T 2a3l_A 573 S--------LFLD---YHRNPFPVFFLRGLNVSLSTDDPLQIHLTKEPLVEEYSIAASVW------------KLSACDLC 629 (701)
T ss_dssp T--------TTCC---STTCSHHHHHHTTCCEEECCBCHHHHCCSSSHHHHHHHHHHHHH------------TCCHHHHH
T ss_pred h--------hccC---chHhHHHHHHHCCCcEEEeCCCccccCCCCcCHHHHHHHHHHHc------------CCCHHHHH
Confidence 1 2211 122389999999999999999875432 5888888776532 48999977
Q ss_pred HHHcHHHHHhcccCC
Q 008063 521 IAHTLSAARACFLEN 535 (579)
Q Consensus 521 ~~~T~npA~~lgl~~ 535 (579)
++ |.|++++.++++
T Consensus 630 ~l-a~Ns~~asfl~~ 643 (701)
T 2a3l_A 630 EI-ARNSVYQSGFSH 643 (701)
T ss_dssp HH-HHHHHHHSCCCH
T ss_pred HH-HHHHHHHhCCCH
Confidence 77 899999999864
|
| >4i6k_A Amidohydrolase family protein; enzyme function initiative, isomerase, structural; HET: CIT; 2.28A {Acinetobacter baumannii} | Back alignment and structure |
|---|
Probab=98.03 E-value=0.00026 Score=69.66 Aligned_cols=144 Identities=13% Similarity=0.048 Sum_probs=82.5
Q ss_pred CHHHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhcCCCCCCceEeeccCCC---------hhhHHHHhhC-C
Q 008063 364 ELESLLSMTMASDKSGLQVAIHAIGDRANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLA---------SGTAARFGDQ-G 433 (579)
Q Consensus 364 ~~~~l~~~~~~a~~~g~~i~iH~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~H~~~~~---------~~~~~~~~~~-~ 433 (579)
..+.+...++.+.+.|+++.+|+.... +..+.......+ .+..+.|+.... .+.+..+.+. |
T Consensus 135 ~~~~~~~~~~~a~~~glpv~iH~~~~~-----l~~~~~~l~~~p---~~~Vi~H~g~p~~~~g~~~~~~~~~~~l~~~~n 206 (294)
T 4i6k_A 135 NTPDWQKFLRNVESLNWQVELHAPPKY-----LVQLLPQLNEYS---FDVVIDHFGRVDPVKGIEDPDYQKFLSLLNVKQ 206 (294)
T ss_dssp SSHHHHHHHHHHHHTTCEEEEECCHHH-----HHHHHHHHTTSS---SCEEESGGGCCCTTTCTTCHHHHHHHHHCCTTT
T ss_pred ccHHHHHHHHHHHHcCCEEEEeeCcch-----HHHHHHHHHHCC---CCEEEECCCCCCCCCCCCCHHHHHHHHHHhCCC
Confidence 347889999999999999999996321 222333333343 467788887642 1233334443 6
Q ss_pred cEEEecccccccchhHHHHhhChhhhhhhhhhHHHHHH-CCC-eeeecCCCCCCCCC---HHHHHHHHHcccCCCCCCCC
Q 008063 434 IVASMQPQHLLDDADSARKKLGVDRAERESYLFQSLLA-NNA-LLALGSDWPVADIN---PLCAIRTAMKRIPPGWDNAW 508 (579)
Q Consensus 434 i~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~-~Gi-~v~~gsD~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 508 (579)
+.+.++-........+. .. .....++.+++ .|. ++.+|||+|..... .+..+...+...
T Consensus 207 v~~k~Sg~~~~~~~~~~-------~~-~~~~~l~~~~~~~g~dRll~gSD~P~~~~~~~~~y~~~~~~l~~~-------- 270 (294)
T 4i6k_A 207 HWIKVSGFYRLGATPSN-------IN-IAQQAYNIFKEKGFLHKLIWGSDWPHTQHESLITYEDAIKAFKQI-------- 270 (294)
T ss_dssp EEEECCCGGGSSSTTHH-------HH-HHHHHHHHHHHHTCGGGEECCCCBTCTTCTTTCCHHHHHHHHHHH--------
T ss_pred EEEEecccccccccCCC-------ch-hhHHHHHHHHHHhCcccEEEeCCCCCCCCcCCCCHHHHHHHHHHH--------
Confidence 66665432221110000 00 11123444443 565 79999999987643 122222223221
Q ss_pred CCCCCCCHHHHHHHHcHHHHHhcccCC
Q 008063 509 IPSERISLTDALIAHTLSAARACFLEN 535 (579)
Q Consensus 509 ~~~~~ls~~~al~~~T~npA~~lgl~~ 535 (579)
+++.++.-+....|+++++|+++
T Consensus 271 ----~~~~~~~~~i~~~NA~rl~~l~~ 293 (294)
T 4i6k_A 271 ----VFDKHEQCLILNQNPTELFGFSR 293 (294)
T ss_dssp ----CCCHHHHHHHHTHHHHHHHTC--
T ss_pred ----CCCHHHHHHHHHHCHHHHhCCCC
Confidence 27899988999999999999864
|
| >1j6o_A TATD-related deoxyribonuclease; structural genomics, TM0667, JCSG, PSI, protein structure initiative, joint center for structural genomics; 1.80A {Thermotoga maritima} SCOP: c.1.9.12 | Back alignment and structure |
|---|
Probab=97.98 E-value=8.2e-05 Score=72.27 Aligned_cols=137 Identities=15% Similarity=0.138 Sum_probs=87.4
Q ss_pred CHHHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhcCCCCCCceEeeccCCChhhHHHHhhCCcEEEeccccc
Q 008063 364 ELESLLSMTMASDKSGLQVAIHAIGDRANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLASGTAARFGDQGIVASMQPQHL 443 (579)
Q Consensus 364 ~~~~l~~~~~~a~~~g~~i~iH~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~H~~~~~~~~~~~~~~~~i~~~~~p~~~ 443 (579)
..+.+...++.|.+.|+++.+|+... ...+++.+ ..++....+..+ |+...+.+.++++.+.|+.+++.....
T Consensus 118 q~~~f~~~~~~a~~~~lPv~iH~~~~--~~~~~~il----~~~p~~~~~~I~-H~~~g~~~~~~~~~~~g~y~~~sg~~~ 190 (268)
T 1j6o_A 118 QKRVFVEQIELAGKLNLPLVVHIRDA--YSEAYEIL----RTESLPEKRGVI-HAFSSDYEWAKKFIDLGFLLGIGGPVT 190 (268)
T ss_dssp HHHHHHHHHHHHHHHTCCEEEEEESC--HHHHHHHH----HHSCCCSSCEEE-TTCCSCHHHHHHHHHHTEEEEECGGGG
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeCch--HHHHHHHH----HhcCCCCCCEEE-EcCCCCHHHHHHHHHCCCeEEeccccc
Confidence 35678999999999999999999632 23333333 334432345555 998888888888888898888774432
Q ss_pred ccchhHHHHhhChhhhhhhhhhHHHHHHC-CC-eeeecCCCCCCCCCH----------HHHHHHHHcccCCCCCCCCCCC
Q 008063 444 LDDADSARKKLGVDRAERESYLFQSLLAN-NA-LLALGSDWPVADINP----------LCAIRTAMKRIPPGWDNAWIPS 511 (579)
Q Consensus 444 ~~~~~~~~~~l~~~~~~~~~~~l~~l~~~-Gi-~v~~gsD~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~ 511 (579)
... ...++.+.+. +. ++.++||+|...+.+ +......+.. .
T Consensus 191 ~~~----------------~~~l~~~i~~~~~driL~eTD~P~~~~~~~~g~~n~p~~~~~~~~~la~-----------~ 243 (268)
T 1j6o_A 191 YPK----------------NEALREVVKRVGLEYIVLETDCPFLPPQPFRGKRNEPKYLKYVVETISQ-----------V 243 (268)
T ss_dssp CTT----------------CHHHHHHHHHHCGGGEEECCCBTSCCCGGGTTSCCCGGGHHHHHHHHHH-----------H
T ss_pred ccc----------------hHHHHHHHHhCChhhEEEecCCCCCCCcccCCCCCchHHHHHHHHHHHH-----------H
Confidence 110 0123333332 33 699999998654322 1111122211 1
Q ss_pred CCCCHHHHHHHHcHHHHHhcccC
Q 008063 512 ERISLTDALIAHTLSAARACFLE 534 (579)
Q Consensus 512 ~~ls~~~al~~~T~npA~~lgl~ 534 (579)
.+++.++.-+..+.|+++++++.
T Consensus 244 ~~~~~e~~~~i~~~Na~rlf~l~ 266 (268)
T 1j6o_A 244 LGVPEAKVDEATTENARRIFLEV 266 (268)
T ss_dssp HTSCHHHHHHHHHHHHHHHHHSC
T ss_pred hCcCHHHHHHHHHHHHHHHhCcc
Confidence 24899999999999999999874
|
| >2xio_A Putative deoxyribonuclease tatdn1; hydrolase; 1.19A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.86 E-value=0.00073 Score=66.71 Aligned_cols=137 Identities=15% Similarity=0.097 Sum_probs=86.3
Q ss_pred HHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhcCCCCCCceEeeccCCChhhHHHHhhCCcEEEeccccccc
Q 008063 366 ESLLSMTMASDKSGLQVAIHAIGDRANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLASGTAARFGDQGIVASMQPQHLLD 445 (579)
Q Consensus 366 ~~l~~~~~~a~~~g~~i~iH~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~H~~~~~~~~~~~~~~~~i~~~~~p~~~~~ 445 (579)
+.+++.+++|++.|+|+.+|+... ....++.+++. +. .....+.|+...+.+.++++.+.|..+++.... ..
T Consensus 127 ~~f~~ql~lA~~~~lPv~iH~r~a--~~~~~~il~~~----~~-~~~~~i~H~f~g~~~~~~~~l~~g~yi~~~g~~-~~ 198 (301)
T 2xio_A 127 KYFEKQFELSEQTKLPMFLHCRNS--HAEFLDITKRN----RD-RCVGGVVHSFDGTKEAAAALIDLDLYIGFNGCS-LK 198 (301)
T ss_dssp HHHHHTHHHHHHHCCCEEEEEESC--HHHHHHHHHHT----GG-GSSCEEETTCCCCHHHHHHHHHTTCEEEECGGG-SS
T ss_pred HHHHHHHHHHHHhCCcEEEEecCc--hHHHHHHHHhc----cC-CCCcEEEEccCCCHHHHHHHHhcCcEEEEcccc-cC
Confidence 567888999999999999999632 33444444432 11 113368999888888899999999998887542 10
Q ss_pred chhHHHHhhChhhhhhhhhhHHHHHHC-CC-eeeecCCCCCCCC-----------------------------C-H--HH
Q 008063 446 DADSARKKLGVDRAERESYLFQSLLAN-NA-LLALGSDWPVADI-----------------------------N-P--LC 491 (579)
Q Consensus 446 ~~~~~~~~l~~~~~~~~~~~l~~l~~~-Gi-~v~~gsD~~~~~~-----------------------------~-~--~~ 491 (579)
.. + ...+.+. +. ++.++||+|.... + | ..
T Consensus 199 ~~-------------~----~~~~~~~~p~drlLleTD~P~~~~~~~~~~~~~l~~~~p~~~~~~~g~~~~~~n~p~~v~ 261 (301)
T 2xio_A 199 TE-------------A----NLEVLKSIPSEKLMIETDAPWCGVKSTHAGSKYIRTAFPTKKKWESGHCLKDRNEPCHII 261 (301)
T ss_dssp SH-------------H----HHHHHHTSCGGGEEECCCTTSCCCCTTSTTGGGCCCCCCEESSCCTTSEETTCCCGGGHH
T ss_pred Ch-------------H----HHHHHHhCChHHEEEecCCCcccccccccccccccccCcccccccccccCCCCCChHHHH
Confidence 00 0 1233333 22 6899999986421 0 1 11
Q ss_pred HHHHHHcccCCCCCCCCCCCCCCCHHHHHHHHcHHHHHhcccCCcccc
Q 008063 492 AIRTAMKRIPPGWDNAWIPSERISLTDALIAHTLSAARACFLENDVGS 539 (579)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~npA~~lgl~~~~G~ 539 (579)
.+...+.. -.+++.+++.+..+.|++++++++. +|-
T Consensus 262 ~~~~~ia~-----------l~g~~~e~~~~~~~~Na~rlf~~~~-~~~ 297 (301)
T 2xio_A 262 QILEIMSA-----------VRDEDPLELANTLYNNTIKVFFPVI-AEN 297 (301)
T ss_dssp HHHHHHHH-----------HHTCCHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHH-----------HHCcCHHHHHHHHHHHHHHHhCchh-hhh
Confidence 11112211 1259999999999999999999864 443
|
| >3tn4_A Phosphotriesterase; lactonase, hydrolase; HET: KCX; 1.50A {Geobacillus kaustophilus} PDB: 3tnb_A* 3tn3_A* 3tn5_A* 3tn6_A* 3ojg_A* 3orw_A* 3f4c_A* 3f4d_A* | Back alignment and structure |
|---|
Probab=97.81 E-value=0.0014 Score=65.88 Aligned_cols=147 Identities=11% Similarity=0.062 Sum_probs=92.8
Q ss_pred HHHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhcCCCCCCceEee-ccCCChhhHHHHhhCCcEEEeccccc
Q 008063 365 LESLLSMTMASDKSGLQVAIHAIGDRANDLVLDMYKSVVVTTGKRDQRFRIEH-AQHLASGTAARFGDQGIVASMQPQHL 443 (579)
Q Consensus 365 ~~~l~~~~~~a~~~g~~i~iH~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~H-~~~~~~~~~~~~~~~~i~~~~~p~~~ 443 (579)
...+++.++++++.|+|+.+|..........++.+. +.+....+..+.| |...+.+..+++.+.|..+...---.
T Consensus 192 ~k~frA~a~aa~etG~Pv~iHt~~~~~~~e~l~iL~----eeG~~~~~vvi~H~~~~~d~~~~~~~l~~G~yl~fD~iG~ 267 (360)
T 3tn4_A 192 KMFFRAAARAQKETGAVIITHTQEGTMGPEQAAYLL----EHGADPKKIVIGHMCDNTDPDYHRKTLAYGVYIAFDRFGI 267 (360)
T ss_dssp HHHHHHHHHHHHHHCCEEEEECSTTCCHHHHHHHHH----HTTCCGGGEEECCGGGCCCHHHHHHHHTTTCEEEECCTTC
T ss_pred HHHHHHHHHHHHHhCCcEEEEcCcccCCHHHHHHHH----HcCCCCCceEEEcCCCCCCHHHHHHHHHcCCEEEEccccc
Confidence 446889999999999999999964322222333332 3455555778999 67778888889999998887642110
Q ss_pred ccchhHHHHhhChhhhhhhhhhHHHHHHCCC--eeeecCCC-------CCCCCCHHHHHHH----------HHcccCCCC
Q 008063 444 LDDADSARKKLGVDRAERESYLFQSLLANNA--LLALGSDW-------PVADINPLCAIRT----------AMKRIPPGW 504 (579)
Q Consensus 444 ~~~~~~~~~~l~~~~~~~~~~~l~~l~~~Gi--~v~~gsD~-------~~~~~~~~~~~~~----------~~~~~~~~~ 504 (579)
.... ..+ ... +....++.+.+.|- ++.++||. +...+.++..... .+.+
T Consensus 268 ~~~~-----~~p-~d~-~r~~~l~~lv~~g~~drILLstDa~~~~~~~py~~p~p~r~~~~~~~y~~i~~~~ip~----- 335 (360)
T 3tn4_A 268 QGMV-----GAP-TDE-ERVRTLLALLRDGYEKQIMLSHDTVNVWLGRPFTLPEPFAEMMKNWHVEHLFVNIIPA----- 335 (360)
T ss_dssp CCST-----TCC-CHH-HHHHHHHHHHHTTCGGGEEECCCCEEEESSSCCCCCHHHHHHTTTCSTTHHHHTHHHH-----
T ss_pred cccc-----CCC-ChH-HHHHHHHHHHHhcCcceEEEecCCCcccccCCCCCcccccccCCCCCchhHHHHHHHH-----
Confidence 0000 000 001 34446788899886 79999997 3333333322111 1111
Q ss_pred CCCCCCCCCCCHHHHHHHHcHHHHHhc
Q 008063 505 DNAWIPSERISLTDALIAHTLSAARAC 531 (579)
Q Consensus 505 ~~~~~~~~~ls~~~al~~~T~npA~~l 531 (579)
..+.|++.+++-++.+.||+++|
T Consensus 336 ----L~~~Gvs~e~I~~i~~~NP~rlf 358 (360)
T 3tn4_A 336 ----LKNEGIRDEVLEQMFIGNPAALF 358 (360)
T ss_dssp ----HHHTTCCHHHHHHHHTHHHHHHH
T ss_pred ----HHHcCCCHHHHHHHHHHhHHHHh
Confidence 02357999999999999999986
|
| >3pnz_A Phosphotriesterase family protein; amidohydrolase fold; HET: KCX; 1.60A {Listeria monocytogenes serotype 4b strorganism_taxid} SCOP: c.1.9.0 | Back alignment and structure |
|---|
Probab=97.80 E-value=0.0016 Score=64.92 Aligned_cols=148 Identities=8% Similarity=0.006 Sum_probs=92.1
Q ss_pred HHHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhcCCCCCCceEeecc-CCChhhHHHHhhCCcEEEeccccc
Q 008063 365 LESLLSMTMASDKSGLQVAIHAIGDRANDLVLDMYKSVVVTTGKRDQRFRIEHAQ-HLASGTAARFGDQGIVASMQPQHL 443 (579)
Q Consensus 365 ~~~l~~~~~~a~~~g~~i~iH~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~H~~-~~~~~~~~~~~~~~i~~~~~p~~~ 443 (579)
.+.+++.+++|++.|+|+.+|+.........++.+++ .+....+..+.||. ..+.+...++.+.|..+...-...
T Consensus 167 ~~~f~aq~~~A~~~glPViiH~r~g~~a~~~l~iL~e----~~~~~~~vvi~H~~~s~~~e~a~~~l~~G~~i~~~g~~t 242 (330)
T 3pnz_A 167 EKTIRAVARAHHETKAPIHSHTEAGTMALEQIEILKQ----ENIPLEYLSIGHMDRNLDPYYHKQVAKTGAFMSFDGIAK 242 (330)
T ss_dssp HHHHHHHHHHHHHHCCCEEEECGGGCCHHHHHHHHHH----TTCCGGGEEETTGGGSCCHHHHHHHHTTTCEEEECCTTC
T ss_pred HHHHHHHHHHHHHHCCeEEEeCCCCcChHHHHHHHHH----cCCCCCeEEEecCCCCCCHHHHHHHHHcCcEEEEccCcc
Confidence 3467888999999999999998632111223444433 34333355678996 667788888999998888763221
Q ss_pred ccchhHHHHhhChhhhhhhhhhHHHHHHCCC--eeeecCCCCCCCCCH----------H-HHHHHHHcccCCCCCCCCCC
Q 008063 444 LDDADSARKKLGVDRAERESYLFQSLLANNA--LLALGSDWPVADINP----------L-CAIRTAMKRIPPGWDNAWIP 510 (579)
Q Consensus 444 ~~~~~~~~~~l~~~~~~~~~~~l~~l~~~Gi--~v~~gsD~~~~~~~~----------~-~~~~~~~~~~~~~~~~~~~~ 510 (579)
.. +.+. . +....++.+.+.|. ++.+.||++..+.-. . ..+...+... ..
T Consensus 243 ~~-------~~~~--~-~~~~~l~~lv~~g~~drilleTD~p~~~~~~~~G~~~~~~~~~~~~~~~l~~~--------a~ 304 (330)
T 3pnz_A 243 IK-------YAPE--S-ARIAAILYLVSEGFEDQILVSGDTARKTYYKHYGHGPGLEYIAKKWVPRFIDE--------AN 304 (330)
T ss_dssp TT-------TCCH--H-HHHHHHHHHHHTTCGGGEEECCCCCSGGGSHHHHCCSTTTHHHHTHHHHHHHH--------HH
T ss_pred cC-------CCCh--H-HHHHHHHHHHHcCCCCeEEEeCCCCCCCCCCccCCCCCcchHHHHHHHHHHHH--------HH
Confidence 10 0000 0 23335778888885 799999987422111 1 1111111000 02
Q ss_pred CCCCCHHH-HHHHHcHHHHHhcccC
Q 008063 511 SERISLTD-ALIAHTLSAARACFLE 534 (579)
Q Consensus 511 ~~~ls~~~-al~~~T~npA~~lgl~ 534 (579)
..|++.++ +.++.|.||+++|+++
T Consensus 305 ~~Gis~ee~i~~~t~~Np~rlf~l~ 329 (330)
T 3pnz_A 305 EKGFDGEKLVKKFFVDNPARCFTFK 329 (330)
T ss_dssp HTTSCHHHHHHHHHTHHHHHHSSCC
T ss_pred HcCCCHHHHHHHHHHHhHHHHhcCC
Confidence 34699998 9999999999999974
|
| >3k2g_A Resiniferatoxin-binding, phosphotriesterase- related protein; TIM barrel, binuclear zinc, protein structure initiative II (PSI II); 1.80A {Rhodobacter sphaeroides 2} | Back alignment and structure |
|---|
Probab=97.78 E-value=0.00065 Score=68.66 Aligned_cols=150 Identities=14% Similarity=0.060 Sum_probs=94.4
Q ss_pred HHHHHHHHHHHHHCCCeEEEEecch-HHHHHHHHHHHHHHHhcCCCCCCceEeecc-CC-ChhhHHHHhhCCcEEEeccc
Q 008063 365 LESLLSMTMASDKSGLQVAIHAIGD-RANDLVLDMYKSVVVTTGKRDQRFRIEHAQ-HL-ASGTAARFGDQGIVASMQPQ 441 (579)
Q Consensus 365 ~~~l~~~~~~a~~~g~~i~iH~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~i~H~~-~~-~~~~~~~~~~~~i~~~~~p~ 441 (579)
.+.+++.+++|++.|+|+.+|+.+. .+....++.+++ .+....+..+.||. .. +.+...++.+.|..+...-.
T Consensus 189 ~~~f~aq~~~A~~~glPV~iH~~gr~~a~~e~l~iL~e----~g~~~~~vvi~H~~~s~~~~e~a~~~l~~G~~I~f~g~ 264 (364)
T 3k2g_A 189 EKSLRGAARAQVRTGLPLMVHLPGWFRLAHRVLDLVEE----EGADLRHTVLCHMNPSHMDPVYQATLAQRGAFLEFDMI 264 (364)
T ss_dssp HHHHHHHHHHHHHHCCCEEEECCTTSCCHHHHHHHHHH----TTCCGGGEEECCCGGGTTCHHHHHHHHHHTCEEEECCT
T ss_pred HHHHHHHHHHHHHHCCeEEEecCCCCccHHHHHHHHHH----cCCCCCceEEECCCCCCCCHHHHHHHHhCCcEEEecCC
Confidence 3457888999999999999998422 223444554433 33333355678998 45 88889999999988877632
Q ss_pred cc---ccchhHHHHhhChhhhhhhhhhHHHHHHCCC--eeeecCCCCCCC---------CC-HHHHHHHHHcccCCCCCC
Q 008063 442 HL---LDDADSARKKLGVDRAERESYLFQSLLANNA--LLALGSDWPVAD---------IN-PLCAIRTAMKRIPPGWDN 506 (579)
Q Consensus 442 ~~---~~~~~~~~~~l~~~~~~~~~~~l~~l~~~Gi--~v~~gsD~~~~~---------~~-~~~~~~~~~~~~~~~~~~ 506 (579)
.. ..+.. ...+... +....++.+.+.|. ++.+.||.+..+ +. ....+...+
T Consensus 265 gt~~~f~~~~----~~~~~d~-~ra~~l~~lv~~gp~drilleTD~p~~~~~~~~gg~~~~~l~~~~~~~l--------- 330 (364)
T 3k2g_A 265 GMDFFYADQG----VQCPSDD-EVARAILGLADHGYLDRILLSHDVFVKMMLTRYGGNGYAFVTKHFLPRL--------- 330 (364)
T ss_dssp TCCCEETTTT----EECCCHH-HHHHHHHHHHHTTCGGGEEECCCCCSGGGSGGGTSCTTSHHHHHHHHHH---------
T ss_pred cccccccccc----cccccHH-HHHHHHHHHHHhCCcccEEEeCCCCCCCCCCCCCCCCcchHHHHHHHHH---------
Confidence 11 00000 0000000 23345788888885 799999986422 11 112121122
Q ss_pred CCCCCCCCCHHHHHHHHcHHHHHhcccCC
Q 008063 507 AWIPSERISLTDALIAHTLSAARACFLEN 535 (579)
Q Consensus 507 ~~~~~~~ls~~~al~~~T~npA~~lgl~~ 535 (579)
...|++.+++.++.|.||+++|+++.
T Consensus 331 ---~~~Gis~eei~~~~~~Np~rlf~l~~ 356 (364)
T 3k2g_A 331 ---RRHGLDDAALETLMVTNPRRVFDASI 356 (364)
T ss_dssp ---HHTTCCHHHHHHHHTHHHHHHHCTTS
T ss_pred ---HHcCCCHHHHHHHHHHHHHHHhCCCc
Confidence 12469999999999999999999874
|
| >3lgd_A Adenosine deaminase CECR1; TIM barrel, dimerization and receptor binding domains, glyco hydrolase, growth factor, secreted; HET: NAG; 2.00A {Homo sapiens} PDB: 3lgg_A* | Back alignment and structure |
|---|
Probab=97.70 E-value=0.00028 Score=73.98 Aligned_cols=142 Identities=16% Similarity=0.091 Sum_probs=92.8
Q ss_pred HHHHHHHHHH--HHHCCCeEEEEecchH--H---HHHHHHHHHHHHHhcCCCCCCceEeeccCCC--hhhHHHHhhCCcE
Q 008063 365 LESLLSMTMA--SDKSGLQVAIHAIGDR--A---NDLVLDMYKSVVVTTGKRDQRFRIEHAQHLA--SGTAARFGDQGIV 435 (579)
Q Consensus 365 ~~~l~~~~~~--a~~~g~~i~iH~~g~~--~---~~~~~~~~~~~~~~~~~~~~~~~i~H~~~~~--~~~~~~~~~~~i~ 435 (579)
+..+...++. |++.|+++.+|+.+.. . ...+.+++ . .+ ...|.|+..+. ++.++++++.++.
T Consensus 308 ~~~f~~~f~~~~A~~~gl~~t~HAGE~~~~g~~~~~~i~~Al-~----Lg----a~RIgHGv~l~~dp~l~~~l~~~~I~ 378 (508)
T 3lgd_A 308 LHDYKEALMIPAKDGVKLPYFFHAGETDWQGTSIDRNILDAL-M----LN----TTRIGHGFALSKHPAVRTYSWKKDIP 378 (508)
T ss_dssp TGGGHHHHTHHHHTTCCCCBCCEECCSSCCSSTTTTHHHHHH-H----TT----CSSEEECTTGGGCHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHcCCceeeecccccCCCCCcHHHHHHHH-h----cC----CceeeeeEecCccHHHHHHHHhcCCe
Confidence 3456667777 8899999999997431 1 22333333 1 12 45899999886 7899999999999
Q ss_pred EEecccccccchhHHHHhhChhhhhhhhhhHHHHHHCCCeeeecCCCCCCC-C-CHHHHHHHHHcccCCCCCCCCCCCCC
Q 008063 436 ASMQPQHLLDDADSARKKLGVDRAERESYLFQSLLANNALLALGSDWPVAD-I-NPLCAIRTAMKRIPPGWDNAWIPSER 513 (579)
Q Consensus 436 ~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 513 (579)
+.+||.+|.. ++.... -...|++.++++|++++++||.+... . .+-.+...+..... ..+
T Consensus 379 levCP~SN~~--------l~~v~~-~~~hP~~~ll~~Gv~V~l~TDdp~~f~~~~Ls~Ey~~a~~~~~---------~~~ 440 (508)
T 3lgd_A 379 IEVCPISNQV--------LKLVSD-LRNHPVATLMATGHPMVISSDDPAMFGAKGLSYDFYEVFMGIG---------GMK 440 (508)
T ss_dssp EEECHHHHHH--------TTSCSS-GGGCTHHHHHHTTCCEEECCBSHHHHTCCTTHHHHHHHHHTTS---------CTT
T ss_pred EEECcchHHH--------hCCCCC-cccChHHHHHHCCCcEEEcCCCccccCCCchHHHHHHHHHHcc---------cCC
Confidence 9999999862 221100 22458999999999999999976432 2 34455555543221 112
Q ss_pred CCHHHHHHHHcHHHHHhcccC
Q 008063 514 ISLTDALIAHTLSAARACFLE 534 (579)
Q Consensus 514 ls~~~al~~~T~npA~~lgl~ 534 (579)
++.++..++ +.|..++-.++
T Consensus 441 ~~~~~l~~L-a~NSi~~Sfl~ 460 (508)
T 3lgd_A 441 ADLRTLKQL-AMNSIKYSTLL 460 (508)
T ss_dssp CCHHHHHHH-HHHHHHTSSSC
T ss_pred CCHHHHHHH-HHHHHHHHCCC
Confidence 466765444 46877766554
|
| >3gtx_A Organophosphorus hydrolase; mutant, amidohydrolase, alpha-beta barrel; HET: KCX; 1.62A {Deinococcus radiodurans} PDB: 2zc1_A* 3gti_A* 3gu9_A* 3gtf_A* 3gth_A* 3gu2_A* 3gu1_A* 3fdk_A* 3htw_A* | Back alignment and structure |
|---|
Probab=97.67 E-value=0.0027 Score=63.48 Aligned_cols=143 Identities=15% Similarity=0.078 Sum_probs=90.5
Q ss_pred HHHHHHHHHHHHHCCCeEEEEec-chHHHHHHHHHHHHHHHhcCCCCCCceEeecc-CCChhhHHHHhhCCcEEEecccc
Q 008063 365 LESLLSMTMASDKSGLQVAIHAI-GDRANDLVLDMYKSVVVTTGKRDQRFRIEHAQ-HLASGTAARFGDQGIVASMQPQH 442 (579)
Q Consensus 365 ~~~l~~~~~~a~~~g~~i~iH~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~i~H~~-~~~~~~~~~~~~~~i~~~~~p~~ 442 (579)
.+.+++-+++|++.|+|+.+|+. +..+.+ .++.+++ .+....+..+.||. ..+.+...++.+.|..+...-..
T Consensus 172 ~~~f~aq~~lA~~~glPViiH~~~gr~a~~-~~~iL~~----~~~~~~~~vi~H~~~~~~~e~a~~~l~~G~~i~~~g~~ 246 (339)
T 3gtx_A 172 QLFFRAAARVQRETGVPIITHTQEGQQGPQ-QAELLTS----LGADPARIMIGHMDGNTDPAYHRETLRHGVSIAFDRIG 246 (339)
T ss_dssp HHHHHHHHHHHHHHCCCEEEECSTTCCHHH-HHHHHHH----TTCCGGGEEECCGGGCCCHHHHHHHHTTTCEEEECCTT
T ss_pred HHHHHHHHHHHHHHCCeEEEeCCCCcCHHH-HHHHHHH----cCCCcccEEEEccCCCCCHHHHHHHHHcCcEEEEccCc
Confidence 34578889999999999999994 222222 3444433 33333345678998 57888899999999988875432
Q ss_pred c-ccchhHHHHhhChhhhhhhhhhHHHHHHCCC--eeeecCCCCCCC-CCH-----H--------------HHHHHHHcc
Q 008063 443 L-LDDADSARKKLGVDRAERESYLFQSLLANNA--LLALGSDWPVAD-INP-----L--------------CAIRTAMKR 499 (579)
Q Consensus 443 ~-~~~~~~~~~~l~~~~~~~~~~~l~~l~~~Gi--~v~~gsD~~~~~-~~~-----~--------------~~~~~~~~~ 499 (579)
. .+.. .+... +....++++.+.+. ++.+.||.+... ..+ . ..+...+
T Consensus 247 t~~~~~-------~p~~~-~~~~~l~~li~~~~~drilleTD~p~~~~~~P~~~p~~~~~~~g~n~p~~l~~~~~~~~-- 316 (339)
T 3gtx_A 247 LQGMVG-------TPTDA-ERLSVLTTLLGEGYADRLLLSHDSIWHWLGRPPAIPEAALPAVKDWHPLHISDDILPDL-- 316 (339)
T ss_dssp CCSSTT-------CCCHH-HHHHHHHHHHHTTCGGGEEECCCCEEEESSSCCCCCGGGHHHHHTCSTTHHHHTHHHHH--
T ss_pred cccccC-------CCchH-HHHHHHHHHHHhcCCCeEEEecCCCccccCCcccccccccccCCCCCchhHHHHHHHHH--
Confidence 1 0000 00000 22335678888876 799999988531 110 1 1111111
Q ss_pred cCCCCCCCCCCCCCCCHHHHHHHHcHHHHHhcc
Q 008063 500 IPPGWDNAWIPSERISLTDALIAHTLSAARACF 532 (579)
Q Consensus 500 ~~~~~~~~~~~~~~ls~~~al~~~T~npA~~lg 532 (579)
...|++.+++.++.|.||+++|+
T Consensus 317 ----------~~~Gis~e~i~~~~~~Np~rlf~ 339 (339)
T 3gtx_A 317 ----------RRRGITEEQVGQMTVGNPARLFG 339 (339)
T ss_dssp ----------HHTTCCHHHHHHHHTHHHHHHHC
T ss_pred ----------HHcCCCHHHHHHHHHHHHHHHhC
Confidence 23569999999999999999875
|
| >3ipw_A Hydrolase TATD family protein; niaid, ssgcid, seattle structural genomics center for infect disease, dysentery, liver abcess; 1.95A {Entamoeba histolytica hm-1} | Back alignment and structure |
|---|
Probab=97.49 E-value=0.0007 Score=67.03 Aligned_cols=133 Identities=14% Similarity=0.164 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHH-CCCeEEEEecchHHHHHHHHHHHHHHHhcCCCCCCceEeeccCCChhhHHHHhhCCcEEEecccccc
Q 008063 366 ESLLSMTMASDK-SGLQVAIHAIGDRANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLASGTAARFGDQGIVASMQPQHLL 444 (579)
Q Consensus 366 ~~l~~~~~~a~~-~g~~i~iH~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~H~~~~~~~~~~~~~~~~i~~~~~p~~~~ 444 (579)
+.+++-+++|++ .++|+.+|+... .+.+++.+++. +.. ..-.+.||+..+.++++++.+.|..+++.....
T Consensus 154 ~~F~~ql~lA~e~~~lPviiH~r~A--~~d~l~iL~~~----~~~-~~~gViH~FsGs~e~a~~~l~lG~yis~~G~~~- 225 (325)
T 3ipw_A 154 SGYRTLSILHQKYPYLPFFFHCRKS--WSDLCQLNKEL----GYN-GCKGVVHCFDGTEEEMNQILNEGWDIGVTGNSL- 225 (325)
T ss_dssp HHHHHTHHHHHHCTTCCEEEEEESC--HHHHHHHHHHT----TCT-TSCEEECSCCCCHHHHHHHHHTTCEEEECSGGG-
T ss_pred HHHHHHHHHHHHhhCCeEEEEeCch--HHHHHHHHHhc----CCC-CCcEEEEECCCCHHHHHHHHhcCcEEeeCcccc-
Confidence 457888999999 999999999743 24445444432 211 123577999999999999999999998887532
Q ss_pred cchhHHHHhhChhhhhhhhhhHHHHHHC-CC-eeeecCCCCCCCCC----------------------------------
Q 008063 445 DDADSARKKLGVDRAERESYLFQSLLAN-NA-LLALGSDWPVADIN---------------------------------- 488 (579)
Q Consensus 445 ~~~~~~~~~l~~~~~~~~~~~l~~l~~~-Gi-~v~~gsD~~~~~~~---------------------------------- 488 (579)
...+ .+ ++.+. .. ++.+-||+|...+.
T Consensus 226 k~~~----------------~~-~~v~~iPldrlLlETDaP~l~~~~~~~~~~~~~~p~p~r~~~k~~~~~~~g~rNeP~ 288 (325)
T 3ipw_A 226 QSIE----------------LL-NVMKQIPIERLHIETDCPYCGIKKTSAGFKYLKEKDFGVKVEKYQRNKYVQRRNEPS 288 (325)
T ss_dssp SSHH----------------HH-HHHTTSCGGGEEECCCTTSCCCCTTSGGGGGCSSCCCCBCGGGCCTTSCBTTCCCGG
T ss_pred CcHH----------------HH-HHHHhCCcccEEEeCCCccccccccccchhcccccCccccccccccccccCCcCcHH
Confidence 1111 11 22221 22 48999998865211
Q ss_pred HHHHHHHHHcccCCCCCCCCCCCCCCCHHHHHHHHcHHHHHhcccC
Q 008063 489 PLCAIRTAMKRIPPGWDNAWIPSERISLTDALIAHTLSAARACFLE 534 (579)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~npA~~lgl~ 534 (579)
....+-..+. .-.+++++++.+..+.|.-+++++.
T Consensus 289 ~v~~v~~~iA-----------~l~g~~~eeva~~t~~Na~~lF~~~ 323 (325)
T 3ipw_A 289 NIIDIAIIMS-----------SIKHISLFEFVNKVYSNSMNMYFPT 323 (325)
T ss_dssp GHHHHHHHHH-----------HHHTCCHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHH-----------HhhCcCHHHHHHHHHHHHHHHhCcC
Confidence 1111111121 1236999999999999999999864
|
| >3guw_A Uncharacterized protein AF_1765; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 3.20A {Archaeoglobus fulgidus dsm 4304} | Back alignment and structure |
|---|
Probab=97.26 E-value=0.00088 Score=64.40 Aligned_cols=133 Identities=15% Similarity=0.074 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHHCCCeEEEEecch---HHHHHHHHHHHHHHHhcCCCCCCceEeeccCCChhhHHHHhhCCcEEEec--c
Q 008063 366 ESLLSMTMASDKSGLQVAIHAIGD---RANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLASGTAARFGDQGIVASMQ--P 440 (579)
Q Consensus 366 ~~l~~~~~~a~~~g~~i~iH~~g~---~~~~~~~~~~~~~~~~~~~~~~~~~i~H~~~~~~~~~~~~~~~~i~~~~~--p 440 (579)
+.+++.+++|++.++|+.+|+... .+.+.+++.+++ .+....+..+.|| +.+.++++.+.|..++.. |
T Consensus 110 ~~f~~ql~lA~e~~lPv~iH~r~~~~~~a~~~~~~il~~----~~~~~~~~vi~H~---~~~~a~~~l~~G~yis~~~~p 182 (261)
T 3guw_A 110 EVLKSQLELAKRMDVPCIIHTPRGNKLKATRKTLEILES----LDFPADLAVIDHV---NFETLDMVLETEYWIGLTVQP 182 (261)
T ss_dssp HHHHHHHHHHHHHTCCEEEECCSSSTTHHHHHHHHHHHH----TTCCTTSEEEESC---CTTTHHHHHTSSSEEEEECC-
T ss_pred HHHHHHHHHHHHhCCeEEEEcCCCcccchHHHHHHHHHH----cCCCCCCEEEEeC---CHHHHHHHHhCCEEEEecCCC
Confidence 457889999999999999999643 334555555544 2322224457798 678888888999888776 3
Q ss_pred cccccchhHHHHhhChhhhhhhhhhHHHHH-HCCC-eeeecCCCCCCCCCHHHHHHHHHcccCCCCCCCCCCC-CCCCHH
Q 008063 441 QHLLDDADSARKKLGVDRAERESYLFQSLL-ANNA-LLALGSDWPVADINPLCAIRTAMKRIPPGWDNAWIPS-ERISLT 517 (579)
Q Consensus 441 ~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~-~~Gi-~v~~gsD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ls~~ 517 (579)
....+ . ++ +++. .-+. ++.+.||+|..+..|.. +... .....+ .|++.
T Consensus 183 g~~t~-----~------~~-------~~~v~~ipldrlLlETD~P~~pn~P~~-----v~~~-----~~~la~~~g~~~- 233 (261)
T 3guw_A 183 GKLSA-----E------DA-------ARIVAEHGPERFMLNSDAGYRDVEITT-----VAEA-----AVKIEEAVGREE- 233 (261)
T ss_dssp -----------------CC-------TTGGGGCC-CCEEEECCCCCC-----------CCCC-----TTHHHHHCTTGG-
T ss_pred CcccH-----H------HH-------HHHHHhCCcceEEEecCCCCCCCCHHH-----HHHH-----HHHHHhhCChhH-
Confidence 32110 0 00 1111 2232 58999999874322210 0000 000011 34554
Q ss_pred HHHHHHcHHHHHhcccCC
Q 008063 518 DALIAHTLSAARACFLEN 535 (579)
Q Consensus 518 ~al~~~T~npA~~lgl~~ 535 (579)
+.+..+.|+.+++|++.
T Consensus 234 -v~~~~~~Na~rlf~~~~ 250 (261)
T 3guw_A 234 -MEKVARENARKFLRVLE 250 (261)
T ss_dssp -GGHHHHSSHHHHTTC--
T ss_pred -HHHHHHHHHHHHHCCCc
Confidence 67788889999999875
|
| >2dvt_A Thermophilic reversible gamma-resorcylate decarbo; TIM barrel, lyase; 1.70A {Rhizobium SP} SCOP: c.1.9.15 PDB: 2dvu_A* 2dvx_A* 3s4t_A* | Back alignment and structure |
|---|
Probab=97.25 E-value=0.0026 Score=63.36 Aligned_cols=54 Identities=20% Similarity=0.284 Sum_probs=36.4
Q ss_pred HHHHHHC-CC-eeeecCCCCCCCCCHHHHHHHHHcccCCCCCCCCCCCCCCCHHHHHHHHcHHHHHhcccC
Q 008063 466 FQSLLAN-NA-LLALGSDWPVADINPLCAIRTAMKRIPPGWDNAWIPSERISLTDALIAHTLSAARACFLE 534 (579)
Q Consensus 466 l~~l~~~-Gi-~v~~gsD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~npA~~lgl~ 534 (579)
++.+.+. |. ++.+|||+|...+ -..+ ..+.. .+++.++.-+..+.|+++++|++
T Consensus 270 ~~~~~~~~g~dril~gSD~P~~~~--~~~~-~~~~~------------~~l~~~~~~~i~~~Na~rl~~l~ 325 (327)
T 2dvt_A 270 LIDAILEIGADRILFSTDWPFENI--DHAS-DWFNA------------TSIAEADRVKIGRTNARRLFKLD 325 (327)
T ss_dssp HHHHHTTTCGGGEECCCCTTTSCH--HHHH-HHHHH------------SSSCHHHHHHHHTHHHHHHTTCC
T ss_pred HHHHHHHhCcccEEEecCCCCccH--HHHH-HHHHH------------CCCCHHHHHHHHHHhHHHHhCCC
Confidence 4455543 44 7999999986532 1221 22221 14899999999999999999984
|
| >3rhg_A Putative phophotriesterase; hydrolase, amidohydrolase, zinc binding site, enzyme functio initiative, EFI; HET: SO4; 1.53A {Proteus mirabilis} | Back alignment and structure |
|---|
Probab=97.16 E-value=0.0015 Score=66.08 Aligned_cols=153 Identities=16% Similarity=0.108 Sum_probs=94.7
Q ss_pred HHHHHHHHHHHHHC-CCeEEEEecch-HHHHHHHHHHHHHHHhcCCCCCCceEeecc-C-CChhhHHHHhhCCcEEEecc
Q 008063 365 LESLLSMTMASDKS-GLQVAIHAIGD-RANDLVLDMYKSVVVTTGKRDQRFRIEHAQ-H-LASGTAARFGDQGIVASMQP 440 (579)
Q Consensus 365 ~~~l~~~~~~a~~~-g~~i~iH~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~i~H~~-~-~~~~~~~~~~~~~i~~~~~p 440 (579)
.+.+++.+++|++. |+|+.+|+.++ .+....++.+.+ ..+....+..+.||. . .+.+...++.+.|..+...-
T Consensus 178 ~~~f~aq~~~A~~~~glPV~iH~~r~~~a~~e~l~iL~e---~~~~~~~~vvi~H~~rs~~~~e~a~~~l~~G~~I~~~g 254 (365)
T 3rhg_A 178 KNSLRAAALAQNNNPYASMNIHMPGWQRRGDEVLDILLT---EMGCDPAKISLAHSDPSGKDIDYQCKMLDRGVWLEFDM 254 (365)
T ss_dssp HHHHHHHHHHHTTCTTCEEEEECCTTSCCHHHHHHHHTT---TTCCCGGGEEESCCGGGTTCHHHHHHHHHTTCEEEECC
T ss_pred HHHHHHHHHHHHHhcCCcEEEECCCCCcCHHHHHHHHHh---ccCCCCCceEEecCCCCCCCHHHHHHHHhCCCEEEecC
Confidence 34578889999999 99999998321 223344443322 113333355678999 4 68888999999999888763
Q ss_pred ccc-ccchhHHHHhhChhhhhhhhhhHHHHHHCCC--eeeecCCCCCCCCCH----------HHHHHHHHcccCCCCCCC
Q 008063 441 QHL-LDDADSARKKLGVDRAERESYLFQSLLANNA--LLALGSDWPVADINP----------LCAIRTAMKRIPPGWDNA 507 (579)
Q Consensus 441 ~~~-~~~~~~~~~~l~~~~~~~~~~~l~~l~~~Gi--~v~~gsD~~~~~~~~----------~~~~~~~~~~~~~~~~~~ 507 (579)
... ....+. .. .+... +....++.+.+.|. ++.+.||.+..++-+ +..+...+
T Consensus 255 ~g~~~tf~~~--~~-~~~d~-~~a~~l~~li~~g~~drilleTD~p~l~~~~~~G~~~~~~l~~~~~~~~---------- 320 (365)
T 3rhg_A 255 IGLDISFPKE--GA-APSVM-DTVEAVATLIERGYGNQIVLSHDVFLKQMWAKNGGNGWGFVPNVFLSLL---------- 320 (365)
T ss_dssp TTCCCBCSSS--CB-CCCHH-HHHHHHHHHHHTTCGGGEEECCCCCSGGGSGGGTSCTTTHHHHTHHHHH----------
T ss_pred CCcccccccc--cc-ccchH-HHHHHHHHHHHhCCCCcEEEeCCCCCCCCCCcCCCCCchhHHHHHHHHH----------
Confidence 210 000000 00 00000 23335788888886 799999987643211 11111111
Q ss_pred CCCCCCCCHHHHHHHHcHHHHHhcccCCc
Q 008063 508 WIPSERISLTDALIAHTLSAARACFLEND 536 (579)
Q Consensus 508 ~~~~~~ls~~~al~~~T~npA~~lgl~~~ 536 (579)
...|++.+++.++.|.||+++|+++.+
T Consensus 321 --~~~Gis~e~i~~~~~~Np~rlf~l~~~ 347 (365)
T 3rhg_A 321 --AQRGIDKTIIDKLCIDNPANLLAAENL 347 (365)
T ss_dssp --HHTTCCHHHHHHHTTHHHHHHHHSCCS
T ss_pred --HHcCCCHHHHHHHHHHHHHHHHCCCCc
Confidence 234699999999999999999998753
|
| >3gg7_A Uncharacterized metalloprotein; structural genomics, unknown function, plasmid, PSI-2, protein structure initiative; 1.50A {Deinococcus radiodurans} SCOP: c.1.9.0 | Back alignment and structure |
|---|
Probab=96.18 E-value=0.028 Score=53.49 Aligned_cols=133 Identities=12% Similarity=0.056 Sum_probs=86.6
Q ss_pred HHHHHHHHHHHHCCCeEE-EEecchHHHHHHHHHHHHHHHhcCCCCCCceEeeccCCChhhHHHHhhCCcEEEecccccc
Q 008063 366 ESLLSMTMASDKSGLQVA-IHAIGDRANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLASGTAARFGDQGIVASMQPQHLL 444 (579)
Q Consensus 366 ~~l~~~~~~a~~~g~~i~-iH~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~H~~~~~~~~~~~~~~~~i~~~~~p~~~~ 444 (579)
+.+++.+++|++.++|+. +|+... .+.+++.+++. +. ..-.+.|+...+.+.++++.+.|..++..+....
T Consensus 104 ~~F~~ql~lA~e~~lPviSiH~r~a--~~~~~~il~~~----~~--~~~~v~H~fsG~~e~a~~~l~~G~yis~~g~~~~ 175 (254)
T 3gg7_A 104 AVFQHILRRCEDHGGRILSIHSRRA--ESEVLNCLEAN----PR--SGTPILHWYSGSVTELRRAISLGCWFSVGPTMVR 175 (254)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECTTC--HHHHHHHHHHC----GG--GEEEEEETCCSCHHHHHHHHHTTCEEEECHHHHT
T ss_pred HHHHHHHHHHHHcCCCEEEEEcCCc--HHHHHHHHHHc----CC--CCcEEEEeCCCCHHHHHHHHcCCcEEEECcccCc
Confidence 457889999999999998 999643 34455555443 11 1124779999999999999999998887754320
Q ss_pred cchhHHHHhhChhhhhhhhhhHHHHHHC-CC-eeeecCCCCCCCC-------CHHHHHHHHHcccCCCCCCCCCCCCCCC
Q 008063 445 DDADSARKKLGVDRAERESYLFQSLLAN-NA-LLALGSDWPVADI-------NPLCAIRTAMKRIPPGWDNAWIPSERIS 515 (579)
Q Consensus 445 ~~~~~~~~~l~~~~~~~~~~~l~~l~~~-Gi-~v~~gsD~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~ls 515 (579)
.+ .++++.+. +. ++.+.||+|..+. .........+.. ..+++
T Consensus 176 --~~----------------~~~~~v~~ip~drlLlETD~P~~~~rg~~n~P~~v~~v~~~iA~-----------~~g~~ 226 (254)
T 3gg7_A 176 --TQ----------------KGAALIRSMPRDRVLTETDGPFLELDGQAALPWDVKSVVEGLSK-----------IWQIP 226 (254)
T ss_dssp --SH----------------HHHHHHHHSCGGGEEECCCTTTSEETTEECCGGGHHHHHHHHHH-----------HHTSC
T ss_pred --hH----------------HHHHHHHHcCCCeEEEeCCCCccccCCCCCCHHHHHHHHHHHHH-----------HhCcC
Confidence 00 12233332 22 5899999986531 112222222221 13589
Q ss_pred HHHHHHHHcHHHHHhcccCC
Q 008063 516 LTDALIAHTLSAARACFLEN 535 (579)
Q Consensus 516 ~~~al~~~T~npA~~lgl~~ 535 (579)
.+++.+..+.|+.+++++..
T Consensus 227 ~ee~~~~~~~N~~~lf~~~~ 246 (254)
T 3gg7_A 227 ASEVERIVKENVSRLLGTVR 246 (254)
T ss_dssp HHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHCCCc
Confidence 99999999999999998753
|
| >2ffi_A 2-pyrone-4,6-dicarboxylic acid hydrolase, putativ; TIM-barrel protein., structural genomics, PSI, protein struc initiative; 2.61A {Pseudomonas putida} SCOP: c.1.9.15 | Back alignment and structure |
|---|
Probab=95.53 E-value=0.047 Score=52.96 Aligned_cols=144 Identities=15% Similarity=0.087 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhcCCCCCCceEeeccCCC---------hhhHHHHhhC-Cc
Q 008063 365 LESLLSMTMASDKSGLQVAIHAIGDRANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLA---------SGTAARFGDQ-GI 434 (579)
Q Consensus 365 ~~~l~~~~~~a~~~g~~i~iH~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~H~~~~~---------~~~~~~~~~~-~i 434 (579)
.+.+..+++.+.++|+++.+|+.... .. .+......++ .+..+.|+.... .+.+..+.+. ++
T Consensus 123 ~~~~~~~~~~a~~~~lpv~iH~~~~~-~~----~~~~~~~~~p---l~~vi~H~g~~~~~~~~~~~~~~~~~~l~~~~n~ 194 (288)
T 2ffi_A 123 GAQWRPLLERIGEQGWHVELHRQVAD-IP----VLVRALQPYG---LDIVIDHFGRPDARRGLGQPGFAELLTLSGRGKV 194 (288)
T ss_dssp STTTHHHHHHHHHHTCEEEECSCTTT-HH----HHHHHHTTTT---CCEEESGGGSCCTTSCTTCTTHHHHTTCCCCSCE
T ss_pred cHHHHHHHHHHHHCCCeEEEeechhh-HH----HHHHHHHHCC---CCEEEECCCCCCCCCCCCChhHHHHHHHHhCCCE
Confidence 35678899999999999999986321 11 2233334444 467888998765 2444444443 56
Q ss_pred EEEecccccccchhHHHHhhChhhhhhhhhhHHHHHHC-CC-eeeecCCCCCCCCC---HHHHHHHHHcccCCCCCCCCC
Q 008063 435 VASMQPQHLLDDADSARKKLGVDRAERESYLFQSLLAN-NA-LLALGSDWPVADIN---PLCAIRTAMKRIPPGWDNAWI 509 (579)
Q Consensus 435 ~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~~-Gi-~v~~gsD~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 509 (579)
.+.++............ . . .....++.+.+. |. ++.+|||+|..... .+......+...
T Consensus 195 y~~~sg~~~~~~~~~~~--~----~-~~~~~~~~~~~~~g~drll~gSD~P~~~~~~~~~~~~~~~~~~~~--------- 258 (288)
T 2ffi_A 195 WVKVSGIYRLQGSPEEN--L----A-FARQALCALEAHYGAERLMWGSDWPHTQHESEVSFGSAVEQFEAL--------- 258 (288)
T ss_dssp EEEEECGGGSSSCHHHH--H----H-HHHHHHHHHHHHTCGGGEEEECCTTCTTCTTTCCHHHHHHHHHHH---------
T ss_pred EEEeCcchhhccccCCC--H----H-HHHHHHHHHHHHhCCCceEEecCCCCCCCCCCCCHHHHHHHHHHH---------
Confidence 55554332211000000 0 0 111234555554 65 79999999876531 222222233221
Q ss_pred CCCCCCHHHHHHHHcHHHHHhcccCC
Q 008063 510 PSERISLTDALIAHTLSAARACFLEN 535 (579)
Q Consensus 510 ~~~~ls~~~al~~~T~npA~~lgl~~ 535 (579)
+++.++.-+....|++++++++.
T Consensus 259 ---~~~~~~~~~i~~~NA~rl~~l~~ 281 (288)
T 2ffi_A 259 ---GCSAQLRQALLLDTARALFGFEL 281 (288)
T ss_dssp ---CCCHHHHHHHHTHHHHHHTTCCC
T ss_pred ---CCCHHHHHHHHHHCHHHHhCccc
Confidence 25888888899999999999863
|
| >3cjp_A Predicted amidohydrolase, dihydroorotase family; structural genomics, protein structure initiative; 1.85A {Clostridium acetobutylicum atcc 824} | Back alignment and structure |
|---|
Probab=95.13 E-value=0.11 Score=50.00 Aligned_cols=129 Identities=15% Similarity=0.050 Sum_probs=75.8
Q ss_pred HHHHHHHHHHHHC-CCeEEEEecch---HHHHHHHHHHHHHHHhcCCCCCCceEeeccCCCh-hhHHHHhh-CCcEEEec
Q 008063 366 ESLLSMTMASDKS-GLQVAIHAIGD---RANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLAS-GTAARFGD-QGIVASMQ 439 (579)
Q Consensus 366 ~~l~~~~~~a~~~-g~~i~iH~~g~---~~~~~~~~~~~~~~~~~~~~~~~~~i~H~~~~~~-~~~~~~~~-~~i~~~~~ 439 (579)
+.+...++.+.+. |+++.+|+... ..... +......++ +.+..+.|+..... +.++.+.+ .|+.+.++
T Consensus 130 ~~~~~~~~~a~~~~~lpv~iH~~~~~~~~~~~~----~~~~l~~~p--~l~iv~~H~G~~~~~~~~~~~~~~~~~y~~~s 203 (272)
T 3cjp_A 130 KSLKPIFKYSMDSGSLPIWIHAFNPLVLQDIKE----IAELCKAFP--KVPVILGHMGGSNWMTAVELAKEIQNLYLDTS 203 (272)
T ss_dssp GGGHHHHHHHHHTTCCCEEECCSTTCCHHHHHH----HHHHHHHST--TSCEEEGGGGGGGHHHHHHHHHHCTTEEEECT
T ss_pred HHHHHHHHHHHhccCCcEEEeCCCCCccccHHH----HHHHHHHCC--CceEEEECCCCccHHHHHHHHHhCCCEEEEec
Confidence 4688999999999 99999999632 22222 233344444 34555666654322 22233333 46666655
Q ss_pred ccccccchhHHHHhhChhhhhhhhhhHHHHHH-CCCeeeecCCCCCCCCCHHHHHHHHHcccCCCCCCCCCCCCCCCHHH
Q 008063 440 PQHLLDDADSARKKLGVDRAERESYLFQSLLA-NNALLALGSDWPVADINPLCAIRTAMKRIPPGWDNAWIPSERISLTD 518 (579)
Q Consensus 440 p~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~-~Gi~v~~gsD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~ 518 (579)
..... . .++.+.+ .+-++.+|||+|...+... ...+.. .+++.++
T Consensus 204 ~~~~~---~----------------~~~~~~~~~~dril~gSD~P~~~~~~~---~~~~~~------------~~l~~~~ 249 (272)
T 3cjp_A 204 AYFST---F----------------VLKIVINELPLKCIFGTDMPFGDLQLS---IEAIKK------------MSNDSYV 249 (272)
T ss_dssp TCSCH---H----------------HHHHHHHHSTTTEECCCCTTSSCHHHH---HHHHHH------------HCSSHHH
T ss_pred ccccH---H----------------HHHHHHHhCCCeEEEeCCCCCCChHHH---HHHHHh------------cCCCHHH
Confidence 43221 0 1122222 3468999999987543221 122211 2489999
Q ss_pred HHHHHcHHHHHhcccC
Q 008063 519 ALIAHTLSAARACFLE 534 (579)
Q Consensus 519 al~~~T~npA~~lgl~ 534 (579)
.-+....|+++++|++
T Consensus 250 ~~~i~~~Na~rl~~l~ 265 (272)
T 3cjp_A 250 ANAVLGDNISRLLNIE 265 (272)
T ss_dssp HHHHHTHHHHHHHTC-
T ss_pred HHHHHHHHHHHHhCcc
Confidence 9999999999999986
|
| >2wje_A CPS4B, tyrosine-protein phosphatase CPSB; capsule biogenesis/degradation, manganese, hydrolase, exopolysaccharide synthesis; 1.90A {Streptococcus pneumoniae} PDB: 2wjd_A 2wjf_A 3qy8_A | Back alignment and structure |
|---|
Probab=94.49 E-value=0.67 Score=43.68 Aligned_cols=90 Identities=11% Similarity=0.048 Sum_probs=50.9
Q ss_pred ChhhHHHHhhCCcEEEeccccc--ccchhHHHHhhChhhhhhhhhhHHHHHHCCCeeeecCCCCCCC--CCHHHHHHHHH
Q 008063 422 ASGTAARFGDQGIVASMQPQHL--LDDADSARKKLGVDRAERESYLFQSLLANNALLALGSDWPVAD--INPLCAIRTAM 497 (579)
Q Consensus 422 ~~~~~~~~~~~~i~~~~~p~~~--~~~~~~~~~~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD~~~~~--~~~~~~~~~~~ 497 (579)
.++.++.+++.|+.+.++..+. .. ..+.... ....-++.+.+.|+.+.+|||.-... ...+......+
T Consensus 150 ~~~~l~~l~~~G~~lEiN~~s~~~~~-------~~g~~~~-~~~~~~~~~~~~gl~~~~GSDaH~~~~~~~~~~~a~~~l 221 (247)
T 2wje_A 150 NEKRVRELIDMGCYTQVNSSHVLKPK-------LFGERYK-FMKKRAQYFLEQDLVHVIASDMHNLDGRPPHMAEAYDLV 221 (247)
T ss_dssp CHHHHHHHHHTTCEEEEEHHHHSCCC-------SSCCSCH-HHHHHHHHHHHTTCCSEEECCBCCSSSSCCCHHHHHHHH
T ss_pred CHHHHHHHHHCCCEEEEecHhhHhcC-------CCCCcCh-HHHHHHHHHHHCCCeEEEEeCCCCCcccChhHHHHHHHH
Confidence 3567888889998877664433 21 0110000 11223566778999999999965432 23344444444
Q ss_pred cccCCCCCCCCCCCCCCCHHHHHHHHcHHHHHhcc
Q 008063 498 KRIPPGWDNAWIPSERISLTDALIAHTLSAARACF 532 (579)
Q Consensus 498 ~~~~~~~~~~~~~~~~ls~~~al~~~T~npA~~lg 532 (579)
.+. +..+.+-.+...||.+.+.
T Consensus 222 ~~~-------------~G~~~~~~l~~~n~~~i~~ 243 (247)
T 2wje_A 222 TQK-------------YGEAKAQELFIDNPRKIVM 243 (247)
T ss_dssp HHH-------------HCHHHHHHHHTHHHHHHHT
T ss_pred HHH-------------hCHHHHHHHHHHHHHHHHc
Confidence 221 2455555555579988875
|
| >3irs_A Uncharacterized protein BB4693; structural genomics, PSI-2, protein structure initiative, TI protein; HET: GOL; 1.76A {Bordetella bronchiseptica} PDB: 3k4w_A | Back alignment and structure |
|---|
Probab=93.50 E-value=0.24 Score=48.16 Aligned_cols=139 Identities=13% Similarity=0.047 Sum_probs=80.9
Q ss_pred CHHHHHHHHHHHHHCCCeEEEEecchH-------HHHHHHHHHHHHHHhcCCCCCCceEeeccCCChhhHHHHh-h-CCc
Q 008063 364 ELESLLSMTMASDKSGLQVAIHAIGDR-------ANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLASGTAARFG-D-QGI 434 (579)
Q Consensus 364 ~~~~l~~~~~~a~~~g~~i~iH~~g~~-------~~~~~~~~~~~~~~~~~~~~~~~~i~H~~~~~~~~~~~~~-~-~~i 434 (579)
..+.+..+++.+.+.|+++.+|+.... .... +..+...++ +.+..+.|+.....+++..+. + .++
T Consensus 136 ~d~~~~~~~~~a~e~glpv~iH~~~~~~~~~~~~~p~~----~~~v~~~~P--~l~ivl~H~G~~~~~~~~~l~~~~~nv 209 (291)
T 3irs_A 136 DDRRLYPLYAFCEDNGIPVIMMTGGNAGPDITYTNPEH----IDRVLGDFP--DLTVVSSHGNWPWVQEIIHVAFRRPNL 209 (291)
T ss_dssp TCGGGHHHHHHHHHTTCCEEEECSSSCSSSGGGGCHHH----HHHHHHHCT--TCCEEEEGGGTTCHHHHHHHHHHCTTE
T ss_pred CCHHHHHHHHHHHHcCCeEEEeCCCCCCCCCccCCHHH----HHHHHHHCC--CCEEEeecCCcccHHHHHHHHhHCCCe
Confidence 345788999999999999999986420 0112 233334443 557788998765444333332 2 355
Q ss_pred EEEecccccccchhHHHHhhChhhhhhhhhhHHHHHH-CCC-eeeecCCCCCCCCCHHHHHHHHHcccCCCCCCCCCCCC
Q 008063 435 VASMQPQHLLDDADSARKKLGVDRAERESYLFQSLLA-NNA-LLALGSDWPVADINPLCAIRTAMKRIPPGWDNAWIPSE 512 (579)
Q Consensus 435 ~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~-~Gi-~v~~gsD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 512 (579)
.+... ..... .+ ....+..+.+ .|. ++.+|||+|...+ ...+ ..+.. .
T Consensus 210 y~~~S--g~~~~-------~~------~~~~~~~~~~~~g~drllfgSD~P~~~~--~~~~-~~~~~------------l 259 (291)
T 3irs_A 210 YLSPD--MYLYN-------LP------GHADFIQAANSFLADRMLFGTAYPMCPL--KEYT-EWFLT------------L 259 (291)
T ss_dssp EEECG--GGGSS-------ST------THHHHHHHHTTGGGGTBCCCCCBTSSCH--HHHH-HHHHT------------S
T ss_pred EecHH--HHhcc-------CC------CHHHHHHHHHHhCcceEEEecCCCCCCH--HHHH-HHHHH------------C
Confidence 54432 21100 00 0012233333 344 6999999987642 2222 22221 2
Q ss_pred CCCHHHHHHHHcHHHHHhcccCCccc
Q 008063 513 RISLTDALIAHTLSAARACFLENDVG 538 (579)
Q Consensus 513 ~ls~~~al~~~T~npA~~lgl~~~~G 538 (579)
+++.++.-+....|++++++++.+-|
T Consensus 260 ~l~~e~~~~i~~~NA~rl~~~~~~~~ 285 (291)
T 3irs_A 260 PIKPDAMEKILHGNAERLLAQAGREG 285 (291)
T ss_dssp SCCHHHHHHHHTHHHHHHHHHSCC--
T ss_pred CCCHHHHHHHHHHHHHHHhCcccccc
Confidence 58999999999999999999987655
|
| >3qy7_A Tyrosine-protein phosphatase YWQE; TIM barrel, polymerase and histindinol phosphatase(PHP)-like phosphatase, hydrolase; 1.62A {Bacillus subtilis} PDB: 3qy6_A | Back alignment and structure |
|---|
Probab=92.52 E-value=3.4 Score=39.21 Aligned_cols=87 Identities=10% Similarity=-0.005 Sum_probs=48.4
Q ss_pred hhhHHHHhhCCcEEEecccccccchhHHHHhhChhhhhhhhhhHHHHHHCCCeeeecCCCCCCC--CCHHHHHHHHHccc
Q 008063 423 SGTAARFGDQGIVASMQPQHLLDDADSARKKLGVDRAERESYLFQSLLANNALLALGSDWPVAD--INPLCAIRTAMKRI 500 (579)
Q Consensus 423 ~~~~~~~~~~~i~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD~~~~~--~~~~~~~~~~~~~~ 500 (579)
++.+..+++.|+.+.++..+... ..+. ......+.+.+.|+.+++|||.-... ...+......+...
T Consensus 147 ~~~l~~l~~~G~~iEiN~~s~~g-------~~g~----~~~~~~~~~~~~gl~~~igSDaH~~~~r~~~~~~a~~~l~~~ 215 (262)
T 3qy7_A 147 PSLLYHLVEKGAASQITSGSLAG-------IFGK----QLKAFSLRLVEANLIHFVASDAHNVKTRNFHTQEALYVLEKE 215 (262)
T ss_dssp THHHHHHHHTTCEEEEEHHHHHT-------TTCH----HHHHHHHHHHHTTCCCEEECCBCSSSSSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCEEEEECCccCc-------ccch----HHHHHHHHHHhCCCeEEEEccCCCCCCCCchHHHHHHHHHHH
Confidence 34577788888776665443320 1111 12224577889999999999964332 22233333333210
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHcHHHHHhcccC
Q 008063 501 PPGWDNAWIPSERISLTDALIAHTLSAARACFLE 534 (579)
Q Consensus 501 ~~~~~~~~~~~~~ls~~~al~~~T~npA~~lgl~ 534 (579)
+..+.+-+ ...||.+.+.-.
T Consensus 216 -------------~G~~~a~~-~~~n~~~il~~~ 235 (262)
T 3qy7_A 216 -------------FGSELPYM-LTENAELLLRNQ 235 (262)
T ss_dssp -------------HCSHHHHH-HHHHHHHHHTTC
T ss_pred -------------hCHHHHHH-HHHHHHHHHCCC
Confidence 23344444 557999988643
|
| >2f6k_A Metal-dependent hydrolase; metal dependent hydrolyse, aminohydro_2, ACMDS, ACMS, trypto metabolism, quinolinic acid, QUIN; 2.50A {Lactobacillus plantarum} SCOP: c.1.9.15 | Back alignment and structure |
|---|
Probab=92.27 E-value=0.32 Score=47.33 Aligned_cols=135 Identities=13% Similarity=0.063 Sum_probs=76.0
Q ss_pred HHHHHHHHHHHHCCCeEEEEecchHH-------------HH-------HHHH-HHHHHHHhcCCCCCCceEeeccCCCh-
Q 008063 366 ESLLSMTMASDKSGLQVAIHAIGDRA-------------ND-------LVLD-MYKSVVVTTGKRDQRFRIEHAQHLAS- 423 (579)
Q Consensus 366 ~~l~~~~~~a~~~g~~i~iH~~g~~~-------------~~-------~~~~-~~~~~~~~~~~~~~~~~i~H~~~~~~- 423 (579)
+.+...++.+.++|+++.+|+..... .. .+.+ .+......++ +.+..+.|+....+
T Consensus 135 ~~~~~~~~~a~~~~lpv~iH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~P--~l~~v~~H~gg~~p~ 212 (307)
T 2f6k_A 135 PVLERVYQELDARQAIVALHPNEPAILPKNVDIDLPVPLLGFFMDTTMTFINMLKYHFFEKYP--NIKVIIPHAGAFLGI 212 (307)
T ss_dssp GGGHHHHHHHHTTTCEEEEECCCCSCCCTTSSTTCCHHHHHHHHHHHHHHHHHHHTTHHHHCT--TCEEEESGGGTTHHH
T ss_pred HhHHHHHHHHHHcCCeEEECCCCCccccccccccccchhccchHHHHHHHHHHHhcCccccCC--CCeEEccCCCccchh
Confidence 56888999999999999999863211 11 0111 1122344444 45677888853211
Q ss_pred --------------hhHHHHhhCCcEEEecccccccchhHHHHhhChhhhhhhhhhHHHHHHC-CC-eeeecCCCCCCCC
Q 008063 424 --------------GTAARFGDQGIVASMQPQHLLDDADSARKKLGVDRAERESYLFQSLLAN-NA-LLALGSDWPVADI 487 (579)
Q Consensus 424 --------------~~~~~~~~~~i~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~~-Gi-~v~~gsD~~~~~~ 487 (579)
+....... |+.+.++..... ..++.+.+. |. ++.+|||+|....
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~-n~y~~~s~~~~~-------------------~~l~~~~~~~g~drll~gSD~P~~~~ 272 (307)
T 2f6k_A 213 VDDRIAQYAQKVYQVDVYDVMH-HVYFDVAGAVLP-------------------RQLPTLMSLAQPEHLLYGSDIPYTPL 272 (307)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHH-HSEEECCSSCTT-------------------THHHHHTTTSCGGGEECCCCTTTSCH
T ss_pred hHHHHHhhccccCcccHHHHHh-heEEeccCCCCH-------------------HHHHHHHHhcCcccEEEecCCCCCCc
Confidence 11222223 565554433210 123444443 44 7999999987654
Q ss_pred CHHHHHHHHHcccCCCCCCCCCCCCCCCHHHHHHHHcHHHHHhccc
Q 008063 488 NPLCAIRTAMKRIPPGWDNAWIPSERISLTDALIAHTLSAARACFL 533 (579)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~npA~~lgl 533 (579)
.........+.. ..+++.++.-+....|+++++|+
T Consensus 273 ~~~~~~~~~l~~-----------~~~l~~~~~~~i~~~Na~rl~~~ 307 (307)
T 2f6k_A 273 DGSRQLGHALAT-----------TDLLTNEQKQAIFYDNAHRLLTE 307 (307)
T ss_dssp HHHHHHHHHHHH-----------CTTSCHHHHHHHHTHHHHHHHHC
T ss_pred hhHHHHHHHHhh-----------ccCCCHHHHHHHHHHHHHHHhCc
Confidence 322222222211 12489999888889999998864
|
| >4do7_A Amidohydrolase 2; enzyme function initiative, EFI, structural TIM-barrel fold, putative lactonase; 1.70A {Burkholderia multivorans} PDB: 4dlm_A 4dnm_A* 4dlf_A | Back alignment and structure |
|---|
Probab=90.37 E-value=2.6 Score=40.83 Aligned_cols=151 Identities=14% Similarity=0.130 Sum_probs=82.4
Q ss_pred HHHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhcCCCCCCceEeeccCCCh--------------hhHHHHh
Q 008063 365 LESLLSMTMASDKSGLQVAIHAIGDRANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLAS--------------GTAARFG 430 (579)
Q Consensus 365 ~~~l~~~~~~a~~~g~~i~iH~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~H~~~~~~--------------~~~~~~~ 430 (579)
.+.+...++.+.++|+++.+|+.... ... +......++ +.+..+.|+..... +.+..++
T Consensus 121 ~~~~~~~~~~~~~~glpv~ih~~~~~-l~~----l~~ll~~~P--~l~iVi~H~G~p~~~~~~~~~~~~~~w~~~l~~la 193 (303)
T 4do7_A 121 DADFARGVAWLQANDYVYDVLVFERQ-LPD----VQAFCARHD--AHWLVLDHAGKPALAEFDRDDTALARWRAALRELA 193 (303)
T ss_dssp CHHHHHHHHHHHHTTCEEEECCCGGG-HHH----HHHHHHHCC--SSCEEEGGGGCCCGGGCC---CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHCCCeEEEecCHHH-HHH----HHHHHHHCC--CCCEEEeCCCCCCccccccccchHHHHHHHHHHHH
Confidence 45788999999999999999986431 122 233333333 56889999987532 2344455
Q ss_pred hC-CcEEEecccccccchhHHHHhhChhhhhhhhhhHHHHHH-CCC-eeeecCCCCCCCC-CHHHHHHHHHcc-cCCCCC
Q 008063 431 DQ-GIVASMQPQHLLDDADSARKKLGVDRAERESYLFQSLLA-NNA-LLALGSDWPVADI-NPLCAIRTAMKR-IPPGWD 505 (579)
Q Consensus 431 ~~-~i~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~-~Gi-~v~~gsD~~~~~~-~~~~~~~~~~~~-~~~~~~ 505 (579)
+. ++.+.++-........ ............+-++.+++ .|. ++++|||+|.... ..+......+.. .
T Consensus 194 ~~~nv~~klSg~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~G~dri~fgSD~P~~~~~~~~~~~~~~~~~~~----- 265 (303)
T 4do7_A 194 ALPHVVCKLSGLVTEADWR---RGLRASDLRHIEQCLDAALDAFGPQRLMFGSDWPVCLLAASYDEVASLVERWA----- 265 (303)
T ss_dssp TSTTEEEEECSCGGGSCTT---TCCCHHHHHHHHHHHHHHHHHHCGGGEEECCCBTGGGGTCCHHHHHHHHHHHH-----
T ss_pred hCCCEEEEeCCcccccccc---ccccCCCHHHHHHHHHHHHHHhCcccEEEeCCCCCCcCcCCHHHHHHHHHHHH-----
Confidence 44 5555544222111000 00000000011112344444 355 7999999987642 122222222211 0
Q ss_pred CCCCCCCCCCHHHHHHHHcHHHHHhcccCC
Q 008063 506 NAWIPSERISLTDALIAHTLSAARACFLEN 535 (579)
Q Consensus 506 ~~~~~~~~ls~~~al~~~T~npA~~lgl~~ 535 (579)
..+++.++.=+....|+++++|++.
T Consensus 266 -----~~~l~~~~~~~i~~~Na~rl~~l~~ 290 (303)
T 4do7_A 266 -----ESRLSAAERSALWGGTAARCYALPE 290 (303)
T ss_dssp -----HHHCCHHHHHHHTTHHHHHHTTCC-
T ss_pred -----hcCCCHHHHHHHHHHHHHHHhCCCC
Confidence 0137888888888899999999864
|
| >3ij6_A Uncharacterized metal-dependent hydrolase; structural genomics, amidohydrolase, PSI-2, protein structure initiative; 2.00A {Lactobacillus acidophilus} | Back alignment and structure |
|---|
Probab=88.05 E-value=3.9 Score=39.88 Aligned_cols=136 Identities=13% Similarity=0.027 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHHHCCCeEEEEecchH--------------HHHHHHHHH-HHHHHhcCCCCCCceEeeccCCChhhHHHH
Q 008063 365 LESLLSMTMASDKSGLQVAIHAIGDR--------------ANDLVLDMY-KSVVVTTGKRDQRFRIEHAQHLASGTAARF 429 (579)
Q Consensus 365 ~~~l~~~~~~a~~~g~~i~iH~~g~~--------------~~~~~~~~~-~~~~~~~~~~~~~~~i~H~~~~~~~~~~~~ 429 (579)
.+.+..+.+.+.+.|+++.+|..... ....+...+ ..+...+| +.+..+.|+...-+-.++++
T Consensus 141 d~~~~p~~~~~~e~g~pv~iH~g~~~~~p~~~~~~~~~~~~~~~~~~li~~gv~~rfP--~Lkii~~H~Gg~~P~~~~r~ 218 (312)
T 3ij6_A 141 DKEFRPVLAQAAKLHVPLWMHPVFDARKPDNNLVFSWEYELSQAMLQLVQSDLFQDYP--NLKILVHHAGAMVPFFSGRI 218 (312)
T ss_dssp STTTHHHHHHHHHTTCCEEEECCCCTTSSSCCTTTHHHHHHHHHHHHHHHTTHHHHCT--TCCEEESGGGTTTTTSHHHH
T ss_pred CccHHHHHHHHHHcCCeEEEcCCCCCCCCCcccccccHHHHHHHHHHHHHcChHhhCC--CCeEEecCCcccHHHHHHHH
Confidence 34678889999999999999985221 011111111 22344444 67888999873222222222
Q ss_pred h----------hCCcEEEecccccccchhHHHHhhChhhhhhhhhhHHHHH-HCCC-eeeecCCCCCCC-C-CHHHHHHH
Q 008063 430 G----------DQGIVASMQPQHLLDDADSARKKLGVDRAERESYLFQSLL-ANNA-LLALGSDWPVAD-I-NPLCAIRT 495 (579)
Q Consensus 430 ~----------~~~i~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~-~~Gi-~v~~gsD~~~~~-~-~~~~~~~~ 495 (579)
. -.++.+..+-.... ..++.+. ..|. ++.+|||.|... + ........
T Consensus 219 ~~~~~~~~~~~~~nvy~dts~~~~~-------------------~~l~~~~~~~g~drilfgSD~P~~~~p~~~~~~~~~ 279 (312)
T 3ij6_A 219 DHILDEKHAQDFKKFYVDTAILGNT-------------------PALQLAIDYYGIDHVLFGTDAPFAVMPSGADQIITQ 279 (312)
T ss_dssp HHHSCHHHHHHGGGCEEECCSSSCH-------------------HHHHHHHHHHCGGGEECCCCBTSSSTTTCSHHHHHH
T ss_pred HHhcccchHHHcCeEEEeCCCCCCH-------------------HHHHHHHHhCCCCeEEEeCCCCCCcCCCcchHHHHH
Confidence 1 12343333211110 0122333 2344 699999998764 2 22222223
Q ss_pred HHcccCCCCCCCCCCCCCCCHHHHHHHHcHHHHHhccc
Q 008063 496 AMKRIPPGWDNAWIPSERISLTDALIAHTLSAARACFL 533 (579)
Q Consensus 496 ~~~~~~~~~~~~~~~~~~ls~~~al~~~T~npA~~lgl 533 (579)
.+.. .+++.++.-+....|+++++|.
T Consensus 280 ~l~~------------l~l~~~~~~~i~~~NA~rl~~~ 305 (312)
T 3ij6_A 280 AIND------------LTISDKDKQKIFHDNYYSLIKE 305 (312)
T ss_dssp HHHT------------SSSCHHHHHHHHTHHHHHHHCC
T ss_pred HHHH------------cCCCHHHHHHHHHHHHHHHHhC
Confidence 3332 2489999888999999999875
|
| >1v77_A PH1877P, hypothetical protein PH1877; RNAse P protein, TIM-barrel, RNA binding protein; 1.80A {Pyrococcus horikoshii} SCOP: c.6.3.2 PDB: 2czv_A* | Back alignment and structure |
|---|
Probab=87.74 E-value=3.8 Score=37.46 Aligned_cols=102 Identities=11% Similarity=-0.102 Sum_probs=64.7
Q ss_pred CceEeeccCC------ChhhHHHHhhCCcEEEecccccccchhHHHHhhChhhh---hhhhhhHHHHHHCCCeeeecCCC
Q 008063 412 RFRIEHAQHL------ASGTAARFGDQGIVASMQPQHLLDDADSARKKLGVDRA---ERESYLFQSLLANNALLALGSDW 482 (579)
Q Consensus 412 ~~~i~H~~~~------~~~~~~~~~~~~i~~~~~p~~~~~~~~~~~~~l~~~~~---~~~~~~l~~l~~~Gi~v~~gsD~ 482 (579)
-..+.|.... +.+.++..++.|+.+.++-.+...... ..|. .....-++...+.|+++.++||.
T Consensus 97 vDII~Hp~~~~~~~~~~~~~a~~A~e~gv~lEIn~s~~~~~~~-------~~R~~~~~~~~~il~l~k~~g~~ivisSDA 169 (212)
T 1v77_A 97 VDAIISPWVNRKDPGIDHVLAKLMVKKNVALGFSLRPLLYSNP-------YERANLLRFMMKAWKLVEKYKVRRFLTSSA 169 (212)
T ss_dssp CSEEECTTTTSSSCSCCHHHHHHHHHHTCEEEEESHHHHHSCH-------HHHHHHHHHHHHHHHHHHHHTCCEEEECCC
T ss_pred CCEEecccccccCCCCCHHHHHHHHHCCeEEEEECcHHhcCCc-------chHHHHHHHHHHHHHHHHhcCCCEEEeCCC
Confidence 5577887654 567778889999999998776421100 0111 01112344556779999999997
Q ss_pred CCCC--CCHHHHHHHHHcccCCCCCCCCCCCCCCCHHHHHHHHcHHHHHhccc
Q 008063 483 PVAD--INPLCAIRTAMKRIPPGWDNAWIPSERISLTDALIAHTLSAARACFL 533 (579)
Q Consensus 483 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~npA~~lgl 533 (579)
.... .++......+ ...|++.++++++.|.+|.+.+..
T Consensus 170 h~~~~v~~~~~~~~l~-------------~~~G~~~e~~~~~l~~~~~~i~~~ 209 (212)
T 1v77_A 170 QEKWDVRYPRDLISLG-------------VVIGMEIPQAKASISMYPEIILKR 209 (212)
T ss_dssp SSGGGCCCHHHHHHHH-------------HHTTCCHHHHHHTTTHHHHHHHC-
T ss_pred CChhhcCCHHHHHHHH-------------HHcCCCHHHHHHHHHHHHHHHHHh
Confidence 5332 3333333322 234699999999999999998753
|
| >3nur_A Amidohydrolase; TIM barrel; 1.75A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=87.20 E-value=3.5 Score=41.12 Aligned_cols=49 Identities=10% Similarity=0.061 Sum_probs=34.6
Q ss_pred CCC-eeeecCCCCCCCCCHHHHHHHHHcccCCCCCCCCCCCCCCCHHHHHHHHcHHHHHhcccCC
Q 008063 472 NNA-LLALGSDWPVADINPLCAIRTAMKRIPPGWDNAWIPSERISLTDALIAHTLSAARACFLEN 535 (579)
Q Consensus 472 ~Gi-~v~~gsD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~npA~~lgl~~ 535 (579)
.|. ++.+|||.|...+.... ..+ ...+++.++.-+....|+++++|++.
T Consensus 306 ~g~drilfgSD~P~~~~~~~~---~~~------------~~~~l~~~~~~~i~~~NA~rl~~l~~ 355 (357)
T 3nur_A 306 VGIDRILYAADYPYIEPEKLG---VFL------------DELGLTDEEKEKISYTNGAKLLGLSS 355 (357)
T ss_dssp HCGGGBCBCCCTTTCCCTTHH---HHT------------TSSCCCHHHHHHHHTHHHHHHHTC--
T ss_pred cCCceEEEeCCCCCCCchHHH---HHH------------HHcCCCHHHHHHHHhHHHHHHhCCCC
Confidence 454 79999999987654321 111 12359999999999999999999863
|
| >3e2v_A 3'-5'-exonuclease; structural genomics, hydrolase, PSI-2, protein initiative, NEW YORK SGX research center for structural GEN nysgxrc; 1.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=85.40 E-value=3.6 Score=41.45 Aligned_cols=74 Identities=11% Similarity=-0.004 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHC----CCeEEEEecchHHHHHHHHHHHHHHHhc---------------------CCCCCCceEeeccC
Q 008063 366 ESLLSMTMASDKS----GLQVAIHAIGDRANDLVLDMYKSVVVTT---------------------GKRDQRFRIEHAQH 420 (579)
Q Consensus 366 ~~l~~~~~~a~~~----g~~i~iH~~g~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~i~H~~~ 420 (579)
+.+++-+++|.+. ++|+.+|+... .+.+++.+++..... ......-.+.||+.
T Consensus 179 ~~F~~QL~LA~e~~~~~~lPv~IH~R~A--~~d~l~iL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~H~Fs 256 (401)
T 3e2v_A 179 VFFEEQLKISCLNDKLSSYPLFLHMRSA--CDDFVQILERFVVGFTDEKDTFQLQKLGASSSSGFYKFHPDRKLVVHSFT 256 (401)
T ss_dssp HHHHHHHHHTTSSHHHHTSCEEEEEESC--HHHHHHHHHHHHHCEECSSCTTCGGGC--CCTTCEECCCTTCCEEECSCC
T ss_pred HHHHHHHHHHHhhhccCCCeEEEEecch--HHHHHHHHHHhhccccccccccccccccccccccccccCCCCcEEEEcCC
Confidence 3467789999999 99999999743 245555555543210 00011347899999
Q ss_pred CChhhHHHHhhCC--cEEEeccc
Q 008063 421 LASGTAARFGDQG--IVASMQPQ 441 (579)
Q Consensus 421 ~~~~~~~~~~~~~--i~~~~~p~ 441 (579)
.+.++++++.+.| ..+++...
T Consensus 257 Gs~e~a~~~l~lG~~~yis~~g~ 279 (401)
T 3e2v_A 257 GSAIDLQKLLNLSPNIFIGVNGC 279 (401)
T ss_dssp CCHHHHHHHHHHCTTEEEEECGG
T ss_pred CCHHHHHHHHhCCCCEEEEeCCE
Confidence 9999999999988 88888765
|
| >4inf_A Metal-dependent hydrolase; amidohydrolase, metal binding site, enzyme functi initiative, EFI; 1.48A {Novosphingobium aromaticivorans} PDB: 4ing_A* | Back alignment and structure |
|---|
Probab=83.34 E-value=5 Score=40.22 Aligned_cols=46 Identities=15% Similarity=0.141 Sum_probs=32.7
Q ss_pred CC-eeeecCCCCCCCCCHHHHHHHHHcccCCCCCCCCCCCCCCCHHHHHHHHcHHHHHhccc
Q 008063 473 NA-LLALGSDWPVADINPLCAIRTAMKRIPPGWDNAWIPSERISLTDALIAHTLSAARACFL 533 (579)
Q Consensus 473 Gi-~v~~gsD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~npA~~lgl 533 (579)
|. ++.+|||.|...... .+ ..+. ..+++.++.-+....|+++++|+
T Consensus 327 g~drilfgSD~P~~~~~~--~~-~~l~------------~~~l~~e~~~~I~~~NA~rlf~L 373 (373)
T 4inf_A 327 GEDRVMYAMDYPYQYVAD--EV-RAMD------------AMDMSAQTKKKFFQTNAEKWFKL 373 (373)
T ss_dssp CGGGEECCCCTTTTCCHH--HH-HHHH------------TCSCCHHHHHHHHTHHHHHHTTC
T ss_pred CcceEEEecCCCCCccHH--HH-HHHH------------hCCCCHHHHHHHHhHHHHHHhCc
Confidence 44 699999998776532 11 1221 13589999888999999999875
|
| >2hbv_A 2-amino-3-carboxymuconate 6-semialdehyde decarbox; ACMSD, TIM-barrel, decarboxylase, metaloenzyme, lyase; 1.65A {Pseudomonas fluorescens} SCOP: c.1.9.15 PDB: 2hbx_A | Back alignment and structure |
|---|
Probab=81.75 E-value=11 Score=36.95 Aligned_cols=25 Identities=8% Similarity=0.231 Sum_probs=22.1
Q ss_pred CCHHHHHHHHHHHHHCCCeEEEEec
Q 008063 363 MELESLLSMTMASDKSGLQVAIHAI 387 (579)
Q Consensus 363 ~~~~~l~~~~~~a~~~g~~i~iH~~ 387 (579)
.+.+.+..+++.+.++|+++.+|+.
T Consensus 155 l~d~~~~p~~~~~~e~~lpv~iH~~ 179 (334)
T 2hbv_A 155 LDDATLEAFLTHCANEDIPILVHPW 179 (334)
T ss_dssp TTSHHHHHHHHHHHHTTCCEEEECC
T ss_pred CCcHHHHHHHHHHHHCCCEEEECCC
Confidence 3457899999999999999999986
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 579 | ||||
| d1onwa1 | 105 | b.92.1.7 (A:1-62,A:347-389) Isoaspartyl dipeptidas | 6e-10 | |
| d2bb0a1 | 113 | b.92.1.10 (A:3-73,A:374-415) Imidazolonepropionase | 2e-09 | |
| d1m7ja1 | 55 | b.92.1.6 (A:7-61) N-acyl-D-aminoacid amidohydrolas | 1e-08 | |
| d2fvka1 | 156 | b.92.1.3 (A:2-56,A:441-541) Dihydropyrimidine amid | 9e-08 | |
| d1ejxc1 | 181 | b.92.1.1 (C:1002-1129,C:1423-1475) alpha-Subunit o | 1e-07 | |
| d1ra0a2 | 320 | c.1.9.5 (A:56-375) Cytosine deaminase catalytic do | 4e-07 | |
| d1yrra1 | 85 | b.92.1.5 (A:1-53,A:351-382) N-acetylglucosamine-6- | 1e-06 | |
| d2r8ca1 | 102 | b.92.1.9 (A:2-57,A:369-414) Uncharacterized protei | 3e-06 | |
| d2p9ba2 | 324 | c.1.9.17 (A:71-394) Uncharacterized protein BL1453 | 4e-05 | |
| d2vhla1 | 91 | b.92.1.5 (A:3-57,A:359-394) N-acetylglucosamine-6- | 5e-05 | |
| d2i9ua1 | 109 | b.92.1.4 (A:9-66,A:377-427) Guanine deaminase {Clo | 6e-05 | |
| d2p9ba1 | 118 | b.92.1.10 (A:9-70,A:395-450) Uncharacterized prote | 9e-05 | |
| d1nfga1 | 127 | b.92.1.3 (A:1-51,A:382-457) D-hydantoinase {Burkho | 1e-04 | |
| d2puza1 | 103 | b.92.1.10 (A:17-79,A:381-420) Imidazolonepropionas | 1e-04 | |
| d2puza1 | 103 | b.92.1.10 (A:17-79,A:381-420) Imidazolonepropionas | 0.001 | |
| d2ooda2 | 325 | c.1.9.9 (A:73-397) Guanine deaminase {Bradyrhizobi | 2e-04 | |
| d2qs8a2 | 310 | c.1.9.18 (A:64-373) Xaa-Pro dipeptidase {Alteromon | 3e-04 | |
| d1e9yb1 | 180 | b.92.1.1 (B:1-131,B:432-480) alpha-Subunit of urea | 3e-04 | |
| d1ynya1 | 127 | b.92.1.3 (A:2-52,A:385-460) D-hydantoinase {Bacill | 7e-04 | |
| d1k1da1 | 128 | b.92.1.3 (A:1-52,A:385-460) D-hydantoinase {Bacill | 0.003 | |
| d2r8ca2 | 311 | c.1.9.18 (A:58-368) Uncharacterized protein EAJ561 | 0.003 |
| >d1onwa1 b.92.1.7 (A:1-62,A:347-389) Isoaspartyl dipeptidase {Escherichia coli [TaxId: 562]} Length = 105 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Isoaspartyl dipeptidase domain: Isoaspartyl dipeptidase species: Escherichia coli [TaxId: 562]
Score = 54.2 bits (130), Expect = 6e-10
Identities = 17/101 (16%), Positives = 41/101 (40%), Gaps = 11/101 (10%)
Query: 45 ADLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPG 104
++ ++ +D + + NG+I++V + V++L G+++ P
Sbjct: 8 GFTLLQGAHLYAPED--RGICDVLVANGKIIAVASNIPSDI--VPNCTVVDLSGQILCPE 63
Query: 105 FIDSH---VHFIPGGLQMARVKLRGVSHKDEFVRRVKEAVK 142
+ + + + L++ +V RG V+ K VK
Sbjct: 64 ILPGNDADLLVMTPELRIEQVYARGKLM----VKDGKACVK 100
|
| >d2bb0a1 b.92.1.10 (A:3-73,A:374-415) Imidazolonepropionase {Bacillus subtilis [TaxId: 1423]} Length = 113 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Imidazolonepropionase-like domain: Imidazolonepropionase species: Bacillus subtilis [TaxId: 1423]
Score = 53.1 bits (127), Expect = 2e-09
Identities = 11/108 (10%), Positives = 26/108 (24%), Gaps = 1/108 (0%)
Query: 472 NNALLALGSDWPVADINPLCAIRTAMKRIPPGWDNAWIPSERISLTDALIAHTLSAARAC 531
+ L+ +G + P + + + A
Sbjct: 4 DTILINIGQLLTMESSGPRAGKSMQDLHVIEDAVVGIHEQKIVFAGQKGAEAGYEADEII 63
Query: 532 FLENDVGSLSPGKIADFVILSTSSWEDFAAEVSAS-IEATYVSGVQAY 578
+ +L G+ AD VI ++ + + +G
Sbjct: 64 DCSGRLVTLKAGRSADLVIWQAPNYMYIPYHYGVNHVHQVMKNGTIVV 111
|
| >d1m7ja1 b.92.1.6 (A:7-61) N-acyl-D-aminoacid amidohydrolase {Alcaligenes faecalis [TaxId: 511]} Length = 55 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: D-aminoacylase domain: N-acyl-D-aminoacid amidohydrolase species: Alcaligenes faecalis [TaxId: 511]
Score = 49.3 bits (118), Expect = 1e-08
Identities = 13/59 (22%), Positives = 28/59 (47%), Gaps = 5/59 (8%)
Query: 45 ADLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVP 103
D +++ G + G ++ + ++ RI +VG+ A+ +++ GKVV P
Sbjct: 2 FDYILSGGTVIDGTNAPGRLADVGVRGDRIAAVGDL-----SASSARRRIDVAGKVVSP 55
|
| >d2fvka1 b.92.1.3 (A:2-56,A:441-541) Dihydropyrimidine amidohydrolase Pyd2 {Yeast (Saccharomyces kluyveri) [TaxId: 4934]} Length = 156 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase) domain: Dihydropyrimidine amidohydrolase Pyd2 species: Yeast (Saccharomyces kluyveri) [TaxId: 4934]
Score = 49.6 bits (118), Expect = 9e-08
Identities = 17/70 (24%), Positives = 36/70 (51%), Gaps = 9/70 (12%)
Query: 46 DLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVV---V 102
DL++ NG+I T D ++A +A+ NG++ + + G+ V++ +G + +
Sbjct: 4 DLIIKNGIICTASD--IYAAEIAVNNGKVQLIAASID----PSLGSEVIDAEGAFITPIL 57
Query: 103 PGFIDSHVHF 112
PG D+ +
Sbjct: 58 PGVSDADLVI 67
|
| >d1ejxc1 b.92.1.1 (C:1002-1129,C:1423-1475) alpha-Subunit of urease {Klebsiella aerogenes [TaxId: 28451]} Length = 181 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: alpha-Subunit of urease domain: alpha-Subunit of urease species: Klebsiella aerogenes [TaxId: 28451]
Score = 50.2 bits (120), Expect = 1e-07
Identities = 19/82 (23%), Positives = 31/82 (37%), Gaps = 8/82 (9%)
Query: 38 TTTTNLEADLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGN------YSAVQQLAADGT 91
DLV+TN +I + + +K+GRI ++G V T
Sbjct: 58 QMLAADCVDLVLTNALIVDHWG--IVKADIGVKDGRIFAIGKAGNPDIQPNVTIPIGAAT 115
Query: 92 NVLNLQGKVVVPGFIDSHVHFI 113
V+ +GK+V G I+
Sbjct: 116 EVIAAEGKIVTAGSIEVGKLAD 137
|
| >d1ra0a2 c.1.9.5 (A:56-375) Cytosine deaminase catalytic domain {Escherichia coli [TaxId: 562]} Length = 320 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Cytosine deaminase catalytic domain domain: Cytosine deaminase catalytic domain species: Escherichia coli [TaxId: 562]
Score = 49.9 bits (117), Expect = 4e-07
Identities = 36/325 (11%), Positives = 77/325 (23%), Gaps = 39/325 (12%)
Query: 229 AMKLILPWIPEVSVDERREALLRASNLALSRGVTTVVDFGRYYPGESVQLSWEDFADVYQ 288
++ ++ D+ ++ + ++ G+ V +
Sbjct: 29 GIERWAERKALLTHDDVKQRAWQTLKWQIANGIQHVRTHVDVS--------DATLTALKA 80
Query: 289 WASYSEKMKIRVCL---FFPLETWSSLADLINKTGHVLSDWVYLGGVKAFADGSLGSNSA 345
+++ + L FP E S + L + G + +
Sbjct: 81 MLEVKQEVAPWIDLQIVAFPQEGILSYPNGEALLEEALRLGADVVGAIPHFEFT-REYGV 139
Query: 346 LFHEPYADEPHNYGLQVMELESLLSMTMASDKSGLQVAIHAIGDRANDLVLDMYKSVVVT 405
Y + + + + H G A
Sbjct: 140 ESLHKTFALAQKYDRLIDVHCDEIDDEQSRFVETVAALAHHEGMGARVTASHT------- 192
Query: 406 TGKRDQRFRIEHAQHLASGTAARFGDQGIVASMQPQ---HLLDDADSARKKLGVDRAERE 462
+ S GI P HL D+ K+ G+ R +E
Sbjct: 193 ------TAMHSYNGAYTSRLFRLLKMSGINFVANPLVNIHLQGRFDTYPKRRGITRV-KE 245
Query: 463 SYLFQSLLANNALLALGSDWPVADINPLCAIRTAMKRIPPGWDNAWIPSERISLTDALIA 522
+ +P+ N L + + + D L
Sbjct: 246 MLESGINVCFGHDGVFDPWYPLGTANMLQVLHMGLHVC--------QLMGYGQINDGLNL 297
Query: 523 HTLSAARACFLENDVGSLSPGKIAD 547
T +AR L++ ++ G A+
Sbjct: 298 ITHHSARTLNLQD--YGIAAGNSAN 320
|
| >d1yrra1 b.92.1.5 (A:1-53,A:351-382) N-acetylglucosamine-6-phosphate deacetylase, NagA {Escherichia coli [TaxId: 562]} Length = 85 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: N-acetylglucosamine-6-phosphate deacetylase, NagA domain: N-acetylglucosamine-6-phosphate deacetylase, NagA species: Escherichia coli [TaxId: 562]
Score = 44.3 bits (104), Expect = 1e-06
Identities = 16/64 (25%), Positives = 25/64 (39%), Gaps = 5/64 (7%)
Query: 48 VVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFID 107
+T G IFTG + L + I +G I SV + + +L G ++ P
Sbjct: 3 ALTQGRIFTGHEFLDDHA-VVIADGLIKSVCPVAELPP----EIEQRSLNGAILSPTLAA 57
Query: 108 SHVH 111
V
Sbjct: 58 GKVA 61
|
| >d2r8ca1 b.92.1.9 (A:2-57,A:369-414) Uncharacterized protein EAJ56179 {Unidentified organism [TaxId: 32644]} Length = 102 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Zn-dependent arginine carboxypeptidase-like domain: Uncharacterized protein EAJ56179 species: Unidentified organism [TaxId: 32644]
Score = 43.9 bits (103), Expect = 3e-06
Identities = 12/68 (17%), Positives = 28/68 (41%), Gaps = 5/68 (7%)
Query: 47 LVVTNGVIFTGDDSLLFAD-SMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGF 105
+ NG + D L + I++G I V + + +V++++GK ++P
Sbjct: 3 FLFRNGALLDPDHPDLLQGFEILIEDGFIREVSDKPI----KSSNAHVIDVKGKTIMPRI 58
Query: 106 IDSHVHFI 113
+ +
Sbjct: 59 VPGAHADV 66
|
| >d2p9ba2 c.1.9.17 (A:71-394) Uncharacterized protein BL1453 {Bifidobacterium longum [TaxId: 216816]} Length = 324 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Imidazolonepropionase-like domain: Uncharacterized protein BL1453 species: Bifidobacterium longum [TaxId: 216816]
Score = 43.9 bits (101), Expect = 4e-05
Identities = 31/321 (9%), Positives = 71/321 (22%), Gaps = 13/321 (4%)
Query: 219 GEPTGLLIDAAMKLILPWIPEVSVDERREALLRASNLALSRGVTTVVDFGRYYPGESVQL 278
P + + + + L GVTT+ G ++
Sbjct: 17 LNPKLATPKGQRMVATFAHSPLGKPYMAATVKHNATTLLESGVTTIRTLGDVGY----EV 72
Query: 279 SWEDFADVYQWASYSEKMKIRVCLFFPLETWSSLADLINKTGHVLSDWVYLGGVKAFADG 338
+ + P + L L + T V
Sbjct: 73 VTLRDQIDAGQILGPRILASGPLMAIPEGHGAPLIALTSGTPEEARTAVAQNLKAGVNAI 132
Query: 339 SLGSNSALFHEPYADEPHNYGLQVMELESLLSMTMASDKSGLQVAIHAIGDRANDLVLDM 398
+ + + E + + V ++ ++ A G R + L
Sbjct: 133 KIAATGGVTDAQEIGEAGSPQMSVEQMRAICDEAHQYGVIVGAHAQSPEGVRRSLLAGVD 192
Query: 399 YKSVVVTTGKRDQRFRIEHAQHLASGTAARFGDQGIVASMQPQHLLDDADSARKKLGVDR 458
+ L +A + + + + +
Sbjct: 193 TIEHGSVLDDELIGMFRHNPNALRGYSALIPTLSAGLPLTLLGQDVTGITDIQLENSKNV 252
Query: 459 AERESYLFQSLLANNALLALGSDWPVADINPLCAIRTAMKRIPPGWDNAWIPSERISLTD 518
+ ++ +G+D + + R + S +
Sbjct: 253 VGGMVSGARQAHEAGLMIGVGTDTGMTFVPQYATWRELELLVAYAG---------FSPAE 303
Query: 519 ALIAHTLSAARACFLENDVGS 539
AL A T A ++ + GS
Sbjct: 304 ALHAATAVNASILGVDAETGS 324
|
| >d2i9ua1 b.92.1.4 (A:9-66,A:377-427) Guanine deaminase {Clostridium acetobutylicum [TaxId: 1488]} Length = 109 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: SAH/MTA deaminase-like domain: Guanine deaminase species: Clostridium acetobutylicum [TaxId: 1488]
Score = 40.2 bits (94), Expect = 6e-05
Identities = 8/67 (11%), Positives = 20/67 (29%), Gaps = 12/67 (17%)
Query: 524 TLSAARACFLENDVGSLSPGKIADFVILSTSSWEDFAAEV------------SASIEATY 571
N++ G D ++++ S+ ++ +I Y
Sbjct: 43 KYKGNPIIDFRNNIIIFEEGYDFDALVINDSNLYPEDYDLTERLERFIYLGDDRNIMKRY 102
Query: 572 VSGVQAY 578
V G + +
Sbjct: 103 VCGNEIF 109
|
| >d2p9ba1 b.92.1.10 (A:9-70,A:395-450) Uncharacterized protein BL1453 {Bifidobacterium longum [TaxId: 216816]} Length = 118 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Imidazolonepropionase-like domain: Uncharacterized protein BL1453 species: Bifidobacterium longum [TaxId: 216816]
Score = 40.2 bits (93), Expect = 9e-05
Identities = 14/75 (18%), Positives = 24/75 (32%), Gaps = 5/75 (6%)
Query: 45 ADLVVTNGVIFTGDDS---LLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVV 101
+ + I TGD + L + +GRI V + L+ GK+V
Sbjct: 4 EPFALAHATIVTGDKAGTILRNMTIVVGADGRIEQVAPSIETS--IPAEYHYLDGTGKIV 61
Query: 102 VPGFIDSHVHFIPGG 116
+ S +
Sbjct: 62 MLEVGKSADLLVLNA 76
|
| >d1nfga1 b.92.1.3 (A:1-51,A:382-457) D-hydantoinase {Burkholderia pickettii [TaxId: 329]} Length = 127 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase) domain: D-hydantoinase species: Burkholderia pickettii [TaxId: 329]
Score = 39.6 bits (92), Expect = 1e-04
Identities = 15/68 (22%), Positives = 27/68 (39%), Gaps = 8/68 (11%)
Query: 46 DLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGF 105
D+++ NG I T D + IK+G+I +G ++ G+ V P
Sbjct: 2 DIIIKNGTIVTADGI--SRADLGIKDGKITQIGGAL------GPAERTIDAAGRYVFPIA 53
Query: 106 IDSHVHFI 113
+ S +
Sbjct: 54 VGSDADIV 61
|
| >d2puza1 b.92.1.10 (A:17-79,A:381-420) Imidazolonepropionase {Agrobacterium tumefaciens [TaxId: 358]} Length = 103 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Imidazolonepropionase-like domain: Imidazolonepropionase species: Agrobacterium tumefaciens [TaxId: 358]
Score = 39.2 bits (91), Expect = 1e-04
Identities = 13/74 (17%), Positives = 25/74 (33%), Gaps = 5/74 (6%)
Query: 45 ADLVVTNGVIFTGDD-----SLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGK 99
A + N + T + + +A++NGRI G S + + + G+
Sbjct: 1 ATALWRNAQLATLNPAMDGIGAVENAVIAVRNGRIAFAGPESDLPDDLSTADETTDCGGR 60
Query: 100 VVVPGFIDSHVHFI 113
+ S I
Sbjct: 61 WITLEAGKSADFAI 74
|
| >d2puza1 b.92.1.10 (A:17-79,A:381-420) Imidazolonepropionase {Agrobacterium tumefaciens [TaxId: 358]} Length = 103 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Imidazolonepropionase-like domain: Imidazolonepropionase species: Agrobacterium tumefaciens [TaxId: 358]
Score = 36.5 bits (84), Expect = 0.001
Identities = 21/108 (19%), Positives = 36/108 (33%), Gaps = 11/108 (10%)
Query: 468 SLLANNALLALGSDWPVADINPLCAIRTAMKRIPPGWDNAWIPSERISLTDALIAHTLSA 527
+ L NA LA + ++ + A+ A+ + G A+ E L +A
Sbjct: 2 TALWRNAQLATLNP----AMDGIGAVENAVIAVRNG-RIAFAGPES-----DLPDDLSTA 51
Query: 528 ARACFLENDVGSLSPGKIADFVILSTSSWEDFAAEVSAS-IEATYVSG 574
+L GK ADF I + + + + A G
Sbjct: 52 DETTDCGGRWITLEAGKSADFAIWDIERPAELVYRIGFNPLHARIFKG 99
|
| >d2ooda2 c.1.9.9 (A:73-397) Guanine deaminase {Bradyrhizobium japonicum [TaxId: 375]} Length = 325 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: SAH/MTA deaminase-like domain: Guanine deaminase species: Bradyrhizobium japonicum [TaxId: 375]
Score = 41.5 bits (95), Expect = 2e-04
Identities = 32/298 (10%), Positives = 77/298 (25%), Gaps = 15/298 (5%)
Query: 243 DERREALLRASNLALSRGVTTVVDFGRYYPGESVQLSWEDFADVYQWASYSEKMKIRVCL 302
+ RE + R + L+ G TT F + + +E+ + R
Sbjct: 42 NYAREGVKRFLDALLAAGTTTCQAFT-SSSPVATEELFEEASRRNMRVIAGLTGIDRNAP 100
Query: 303 FFPLETW-SSLADLINKTGHVLSDWVYLGGVKAFADGSLGSNSALFHEPYADEPHNYGLQ 361
++T + D L + + E + +
Sbjct: 101 AEFIDTPENFYRDSKRLIAQYHDKGRNLYAITPRFAFGASPELLKACQRLKHEHPDCWVN 160
Query: 362 VMELESLLSMTMASDKSGLQVAIHAIGDRANDLVLDMYKSVVVTTGKRDQRFRIEHAQHL 421
E+ + + + ++ + ++ S + FR +
Sbjct: 161 THISENPAECSGVLVEHPDCQDYLGVYEKFD--LVGPKFSGGHGVYLSNNEFRRMSKKGA 218
Query: 422 ASGTAARFGDQGIVASMQPQHLLDDADSARKKLGVDRAERESYLFQSLLANNALLALGSD 481
A + D + G D + S+L + + + ++
Sbjct: 219 AVVFCPCSNLFLGSGLFRLGRATDPEHRVKMSFGTDVGGGNRFSMISVLDDAYKVGMCNN 278
Query: 482 WPVADINPLCAIRTAMKRIPPGWDNAWIPSERISLTDALIAHTLSAARACFLENDVGS 539
P D A ++S + TL A ++++ +G+
Sbjct: 279 T-----------LLDGSIDPSRKDLAEAERNKLSPYRGFWSVTLGGAEGLYIDDKLGN 325
|
| >d2qs8a2 c.1.9.18 (A:64-373) Xaa-Pro dipeptidase {Alteromonas macleodii [TaxId: 28108]} Length = 310 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Zn-dependent arginine carboxypeptidase-like domain: Xaa-Pro dipeptidase species: Alteromonas macleodii [TaxId: 28108]
Score = 40.4 bits (92), Expect = 3e-04
Identities = 32/305 (10%), Positives = 76/305 (24%), Gaps = 21/305 (6%)
Query: 239 EVSVDERREALLRASNLALSRGVTTVVDFGRYYPGESVQLSWEDFADVYQWASYSEKMKI 298
+V + + + + + G TTV G + + ++ I
Sbjct: 22 KVEREMQAILATQHAYVTFKSGFTTVRQVGDSGLVAISLRDAINSGKLAGPRIFAAGKTI 81
Query: 299 RVCLFFPLETWSSLADLINKTGHVLSDWVYLGGVKAFADGSLGSNSALFHEPYAD----E 354
T D + V A +
Sbjct: 82 ATTGGHADPTNGKAVDDYDYPVPEQGVVNGPYEVYAAVRQRYKDGADGIKITVTGGVLSV 141
Query: 355 PHNYGLQVMELESLLSMTMASDKSGLQVAIHAIGDRANDLVLDMYKSVVVTTGKRDQRFR 414
+ E + ++ A+ G+ VA+HA G + + D
Sbjct: 142 AKSGQNPQFTQEEVDAVVSAAKDYGMWVAVHAHGAEGMKRAIKAGVDSIEHGTFMDLEAM 201
Query: 415 IEHAQHLASGTAARFGDQGIVASMQPQHLLDDADSARKKLGVDRAERESYLFQSLLANNA 474
++ + + + + + + + S F+
Sbjct: 202 DLMIENGTYYVPTISAGEFVAEKSKIDNFFPEIVRPKAA---SVGPQISDTFRKAYEKGV 258
Query: 475 LLALGSDWPVADI-NPLCAIRTAMKRIPPGWDNAWIPSERISLTDALIAHTLSAARACFL 533
+A G+D V ++ +P+ A+ + T+ A+ +
Sbjct: 259 KIAFGTDAGVQKHGTNWKEFVYMVE--------NGMPAM-----KAIQSATMETAKLLRI 305
Query: 534 ENDVG 538
E+ +G
Sbjct: 306 EDKLG 310
|
| >d1e9yb1 b.92.1.1 (B:1-131,B:432-480) alpha-Subunit of urease {Helicobacter pylori [TaxId: 210]} Length = 180 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: alpha-Subunit of urease domain: alpha-Subunit of urease species: Helicobacter pylori [TaxId: 210]
Score = 39.3 bits (92), Expect = 3e-04
Identities = 18/87 (20%), Positives = 34/87 (39%), Gaps = 14/87 (16%)
Query: 39 TTTNLEADLVVTNGVIFTGDDSLLFADSMAIKNGRIVSV---GNYSAVQQLAAD-----G 90
+ E DL++TN +I D + ++ + IK+G+I + GN + +
Sbjct: 60 NPSKEELDLIITNALIV--DYTGIYKADIGIKDGKIAGIGKGGNKDMQDGVKNNLSVGPA 117
Query: 91 TNVLNLQGKVVVPG----FIDSHVHFI 113
T L +G +V G +
Sbjct: 118 TEALAGEGLIVTAGADLVLWSPAFFGV 144
|
| >d1ynya1 b.92.1.3 (A:2-52,A:385-460) D-hydantoinase {Bacillus sp. AR9 [TaxId: 301298]} Length = 127 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase) domain: D-hydantoinase species: Bacillus sp. AR9 [TaxId: 301298]
Score = 37.6 bits (87), Expect = 7e-04
Identities = 16/67 (23%), Positives = 31/67 (46%), Gaps = 7/67 (10%)
Query: 47 LVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFI 106
+ G + T D+ AD + I+ R+V++G QL+ +G ++ G V+P +
Sbjct: 2 KWIRGGTVVTAADTYQ-AD-VLIEGERVVAIG-----HQLSVNGAEEIDATGCYVIPIAV 54
Query: 107 DSHVHFI 113
S +
Sbjct: 55 GSDADIV 61
|
| >d1k1da1 b.92.1.3 (A:1-52,A:385-460) D-hydantoinase {Bacillus stearothermophilus [TaxId: 1422]} Length = 128 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase) domain: D-hydantoinase species: Bacillus stearothermophilus [TaxId: 1422]
Score = 35.8 bits (82), Expect = 0.003
Identities = 17/68 (25%), Positives = 30/68 (44%), Gaps = 7/68 (10%)
Query: 46 DLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGF 105
++ NG I T D+ + + IK+G+I +G L G V++ +G V P
Sbjct: 2 TKIIKNGTIVTATDT--YEAHLLIKDGKIAMIGQ-----NLEEKGAEVIDAKGCYVFPIV 54
Query: 106 IDSHVHFI 113
+ S +
Sbjct: 55 VGSDADLV 62
|
| >d2r8ca2 c.1.9.18 (A:58-368) Uncharacterized protein EAJ56179 {Unidentified organism [TaxId: 32644]} Length = 311 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Zn-dependent arginine carboxypeptidase-like domain: Uncharacterized protein EAJ56179 species: Unidentified organism [TaxId: 32644]
Score = 37.7 bits (85), Expect = 0.003
Identities = 43/329 (13%), Positives = 84/329 (25%), Gaps = 34/329 (10%)
Query: 225 LIDAAMKLILPWIPEVSVDERREALLRASNL-----ALSRGVTTVVDFGRYYPGESVQLS 279
LID + ++ V L+ + L RG TTV D G +
Sbjct: 2 LIDLHVHVVAIEFNLPRVATLPNVLVTLRAVPIMRAMLRRGFTTVRDAGGAGYPFKQAVE 61
Query: 280 WEDFADVYQWASYSEKMKIRVCLFFPLETWSSLADLINKTGHVLSDWVYLGGVKAFADG- 338
+ S + + D V +G + ADG
Sbjct: 62 SGLVEGPRLFVSGRALSQTGGHADPRARSDYMPPD------SPCGCCVRVGALGRVADGV 115
Query: 339 -SLGSNSALFHEPYADEPHNYGLQVMELESLLSMTMASDKSGLQVAIHAIGDRANDLVLD 397
+ + AD+ + + + ++ + R ++
Sbjct: 116 DEVRRAVREELQMGADQIKIMASGGVASPTDPVGVFGYSEDEIRAIVAEAQGRGTYVLAH 175
Query: 398 MYKSVVVTTGKRDQRFRIEHAQHLASGTAARFGDQGIVASMQPQHLLDDADSARK----- 452
Y + R IEH + TA + G A K
Sbjct: 176 AYTPAAIARAVRCGVRTIEHGNLIDDETARLVAEHGAYVVPTLVTYDALASEGEKYGLPP 235
Query: 453 ---KLGVDRAERESYLFQSLLANNALLALGSDWPVADINPLCAIRTAMKRIPPGWDNAWI 509
D + + + + G+D D I
Sbjct: 236 ESIAKIADVHGAGLHSIEIMKRAGVKMGFGTDLLGEAQRLQ-------------SDEFRI 282
Query: 510 PSERISLTDALIAHTLSAARACFLENDVG 538
+E +S + + + T+ +A +++ +G
Sbjct: 283 LAEVLSPAEVIASATIVSAEVLGMQDKLG 311
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 579 | |||
| d2uz9a2 | 313 | Guanine deaminase {Human (Homo sapiens) [TaxId: 96 | 99.86 | |
| d2i9ua2 | 310 | Guanine deaminase {Clostridium acetobutylicum [Tax | 99.84 | |
| d1p1ma2 | 281 | Hypothetical protein TM0936, probable catalytic do | 99.83 | |
| d1ra0a2 | 320 | Cytosine deaminase catalytic domain {Escherichia c | 99.79 | |
| d2paja2 | 336 | Hypothetical protein GOS_1943094 {Environmental sa | 99.78 | |
| d2bb0a2 | 300 | Imidazolonepropionase {Bacillus subtilis [TaxId: 1 | 99.71 | |
| d2q09a2 | 301 | Probable 4-imidazolone-5-propanoate amidohydrolase | 99.67 | |
| d2imra2 | 308 | Hypothetical protein DR0824 {Deinococcus radiodura | 99.67 | |
| d2puza2 | 301 | Imidazolonepropionase {Agrobacterium tumefaciens [ | 99.66 | |
| d2p9ba2 | 324 | Uncharacterized protein BL1453 {Bifidobacterium lo | 99.6 | |
| d2p9ba1 | 118 | Uncharacterized protein BL1453 {Bifidobacterium lo | 99.53 | |
| d1gkpa2 | 335 | D-hydantoinase {Thermus sp. [TaxId: 275]} | 99.53 | |
| d2ooda2 | 325 | Guanine deaminase {Bradyrhizobium japonicum [TaxId | 99.53 | |
| d2qs8a2 | 310 | Xaa-Pro dipeptidase {Alteromonas macleodii [TaxId: | 99.52 | |
| d1yrra1 | 85 | N-acetylglucosamine-6-phosphate deacetylase, NagA | 99.5 | |
| d3be7a2 | 303 | Zn-dependent arginine carboxypeptidase {Unidentifi | 99.5 | |
| d2r8ca2 | 311 | Uncharacterized protein EAJ56179 {Unidentified org | 99.48 | |
| d1kcxa2 | 334 | Dihydropyrimidinase related protein-1 {Mouse (Mus | 99.47 | |
| d2ftwa2 | 334 | Dihydropyrimidine amidohydrolase Pyd2 {Dictyosteli | 99.47 | |
| d1ynya2 | 332 | D-hydantoinase {Bacillus sp. AR9 [TaxId: 301298]} | 99.46 | |
| d1onwa1 | 105 | Isoaspartyl dipeptidase {Escherichia coli [TaxId: | 99.42 | |
| d1nfga2 | 330 | D-hydantoinase {Burkholderia pickettii [TaxId: 329 | 99.42 | |
| d4ubpc2 | 390 | alpha-subunit of urease, catalytic domain {Bacillu | 99.37 | |
| d1gkra2 | 325 | L-hydantoinase {Arthrobacter aurescens [TaxId: 436 | 99.36 | |
| d2r8ca1 | 102 | Uncharacterized protein EAJ56179 {Unidentified org | 99.32 | |
| d2fvka2 | 384 | Dihydropyrimidine amidohydrolase Pyd2 {Yeast (Sacc | 99.32 | |
| d1nfga1 | 127 | D-hydantoinase {Burkholderia pickettii [TaxId: 329 | 99.32 | |
| d2bb0a1 | 113 | Imidazolonepropionase {Bacillus subtilis [TaxId: 1 | 99.3 | |
| d1ynya1 | 127 | D-hydantoinase {Bacillus sp. AR9 [TaxId: 301298]} | 99.28 | |
| d1e9yb2 | 389 | alpha-subunit of urease, catalytic domain {Helicob | 99.26 | |
| d1ejxc1 | 181 | alpha-Subunit of urease {Klebsiella aerogenes [Tax | 99.23 | |
| d1k1da1 | 128 | D-hydantoinase {Bacillus stearothermophilus [TaxId | 99.23 | |
| d2qs8a1 | 96 | Xaa-Pro dipeptidase {Alteromonas macleodii [TaxId: | 99.22 | |
| d2fvka1 | 156 | Dihydropyrimidine amidohydrolase Pyd2 {Yeast (Sacc | 99.22 | |
| d1xrta2 | 310 | Two-domain dihydroorotase {Aquifex aeolicus [TaxId | 99.22 | |
| d1m7ja1 | 55 | N-acyl-D-aminoacid amidohydrolase {Alcaligenes fae | 99.14 | |
| d3be7a1 | 95 | Zn-dependent arginine carboxypeptidase {Unidentifi | 99.13 | |
| d1gkra1 | 126 | L-hydantoinase {Arthrobacter aurescens [TaxId: 436 | 99.07 | |
| d2vhla1 | 91 | N-acetylglucosamine-6-phosphate deacetylase, NagA | 99.03 | |
| d2icsa2 | 267 | Putative adenine deaminase EF0837 {Enterococcus fa | 99.02 | |
| d1gkpa1 | 123 | D-hydantoinase {Thermus sp. [TaxId: 275]} | 99.0 | |
| d1i0da_ | 331 | Phosphotriesterase (parathion hydrolase, PTE) {Pse | 98.92 | |
| d1yrra2 | 297 | N-acetylglucosamine-6-phosphate deacetylase, NagA, | 98.88 | |
| d1kcxa1 | 142 | Dihydropyrimidinase related protein-1 {Mouse (Mus | 98.87 | |
| d1ejxc2 | 385 | alpha-subunit of urease, catalytic domain {Klebsie | 98.7 | |
| d2ftwa1 | 150 | Dihydropyrimidine amidohydrolase Pyd2 {Dictyosteli | 98.69 | |
| d2eg6a1 | 343 | Dihydroorotase {Escherichia coli [TaxId: 562]} | 98.65 | |
| d1onwa2 | 284 | Isoaspartyl dipeptidase, catalytic domain {Escheri | 98.61 | |
| d1xrta1 | 112 | Two-domain dihydroorotase {Aquifex aeolicus [TaxId | 98.56 | |
| d2i9ua1 | 109 | Guanine deaminase {Clostridium acetobutylicum [Tax | 98.54 | |
| d2vhla2 | 301 | N-acetylglucosamine-6-phosphate deacetylase, NagA, | 98.46 | |
| d1p1ma1 | 123 | Hypothetical protein TM0936 {Thermotoga maritima [ | 98.43 | |
| d1bf6a_ | 291 | Phosphotriesterase homology protein {Escherichia c | 98.42 | |
| d2paja1 | 139 | Hypothetical protein GOS_1943094 {Environmental sa | 98.4 | |
| d2puza1 | 103 | Imidazolonepropionase {Agrobacterium tumefaciens [ | 98.3 | |
| d1yixa1 | 265 | Putative deoxyribonuclease YcfH {Escherichia coli | 98.3 | |
| d1a4ma_ | 349 | Adenosine deaminase (ADA) {Mouse (Mus musculus) [T | 98.28 | |
| d2amxa1 | 357 | Adenosine deaminase (ADA) {Plasmodium yoelii [TaxI | 98.27 | |
| d1zzma1 | 259 | Putative deoxyribonuclease YjjV {Escherichia coli | 98.19 | |
| d1e9yb1 | 180 | alpha-Subunit of urease {Helicobacter pylori [TaxI | 98.1 | |
| d2puza1 | 103 | Imidazolonepropionase {Agrobacterium tumefaciens [ | 98.08 | |
| d1xwya1 | 260 | Deoxyribonuclease TatD (MttC) {Escherichia coli [T | 98.07 | |
| d4ubpc1 | 180 | alpha-Subunit of urease {Bacillus pasteurii [TaxId | 98.04 | |
| d1m7ja2 | 61 | N-acyl-D-aminoacid amidohydrolase {Alcaligenes fae | 98.02 | |
| d1m7ja3 | 358 | N-acyl-D-aminoacid amidohydrolase, catalytic domai | 97.98 | |
| d2q09a1 | 103 | Probable 4-imidazolone-5-propanoate amidohydrolase | 97.86 | |
| d1j6oa_ | 260 | Hypothetical protein TM0667 {Thermotoga maritima [ | 97.6 | |
| d2ooda1 | 140 | Guanine deaminase {Bradyrhizobium japonicum [TaxId | 97.45 | |
| d1xrta1 | 112 | Two-domain dihydroorotase {Aquifex aeolicus [TaxId | 97.35 | |
| d1o12a1 | 76 | N-acetylglucosamine-6-phosphate deacetylase, NagA | 97.03 | |
| d2uz9a1 | 131 | Guanine deaminase {Human (Homo sapiens) [TaxId: 96 | 96.92 | |
| d2q09a1 | 103 | Probable 4-imidazolone-5-propanoate amidohydrolase | 96.91 | |
| d1kcxa1 | 142 | Dihydropyrimidinase related protein-1 {Mouse (Mus | 96.21 | |
| d1o12a2 | 288 | N-acetylglucosamine-6-phosphate deacetylase, NagA, | 96.2 | |
| d2dvta1 | 325 | Thermophilic reversible gamma-resorcylate decarbox | 95.93 | |
| d2ftwa1 | 150 | Dihydropyrimidine amidohydrolase Pyd2 {Dictyosteli | 95.85 | |
| d1ra0a1 | 103 | Cytosine deaminase {Escherichia coli [TaxId: 562]} | 95.62 | |
| d2qs8a1 | 96 | Xaa-Pro dipeptidase {Alteromonas macleodii [TaxId: | 95.37 | |
| d1gkra1 | 126 | L-hydantoinase {Arthrobacter aurescens [TaxId: 436 | 95.26 | |
| d1o12a1 | 76 | N-acetylglucosamine-6-phosphate deacetylase, NagA | 94.63 | |
| d2icsa1 | 101 | Putative adenine deaminase EF0837 {Enterococcus fa | 93.94 | |
| d2icsa1 | 101 | Putative adenine deaminase EF0837 {Enterococcus fa | 93.0 | |
| d2ooda1 | 140 | Guanine deaminase {Bradyrhizobium japonicum [TaxId | 92.42 | |
| d1o12a2 | 288 | N-acetylglucosamine-6-phosphate deacetylase, NagA, | 90.55 | |
| d3be7a1 | 95 | Zn-dependent arginine carboxypeptidase {Unidentifi | 90.13 | |
| d2a3la1 | 628 | AMP deaminase (AMPD), catalytic domain {Thale cres | 88.31 |
| >d2uz9a2 c.1.9.9 (A:76-388) Guanine deaminase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: SAH/MTA deaminase-like domain: Guanine deaminase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.86 E-value=1.3e-20 Score=187.60 Aligned_cols=163 Identities=17% Similarity=0.169 Sum_probs=126.1
Q ss_pred CCHHHHHHHHHHHHHCCCeEEEEecchHHHHHHHHH-------HHHHHHhcCCCCCCceEeeccCCChhhHHHHhhCCcE
Q 008063 363 MELESLLSMTMASDKSGLQVAIHAIGDRANDLVLDM-------YKSVVVTTGKRDQRFRIEHAQHLASGTAARFGDQGIV 435 (579)
Q Consensus 363 ~~~~~l~~~~~~a~~~g~~i~iH~~g~~~~~~~~~~-------~~~~~~~~~~~~~~~~i~H~~~~~~~~~~~~~~~~i~ 435 (579)
.+++.++++.+.|++.|+++.+|+.+.......... ........+..+.+..+.|+.++++++++++++.++.
T Consensus 143 ~~~e~l~~~~~~a~~~g~~~~~H~~e~~~e~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~H~~~l~~~e~~~l~~~g~~ 222 (313)
T d2uz9a2 143 CSETLMGELGNIAKTRDLHIQSHISENRDEVEAVKNLYPSYKNYTSVYDKNNLLTNKTVMAHGCYLSAEELNVFHERGAS 222 (313)
T ss_dssp CCHHHHHHHHHHHHHHTCEEEEEESCSHHHHHHHHHHSTTSSSHHHHHHHTTCCSTTEEEEECTTCCHHHHHHHHHHTCE
T ss_pred ccHHHHHHHHHHhhccccceeeehhcchhHHHHHHHhhcccCChHHHHHHcCCcCCcceEEeeeecchhHHHHHhhhccc
Confidence 688999999999999999999999855332222211 1223445666778999999999999999999999999
Q ss_pred EEecccccccchhHHHHhhChhhhhhhhhhHHHHHHCCCeeeecCCCCCC-CCCHHHHHHHHHcccCCCCCCCCCCCCCC
Q 008063 436 ASMQPQHLLDDADSARKKLGVDRAERESYLFQSLLANNALLALGSDWPVA-DINPLCAIRTAMKRIPPGWDNAWIPSERI 514 (579)
Q Consensus 436 ~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 514 (579)
+++||.++. .++ ...++++++.+.|+++++|||+... ..+++.+|+.++...... ........++
T Consensus 223 ~~~~P~~~~--------~~~-----~~~~~v~~l~~~Gv~valGTD~~~~~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~ 288 (313)
T d2uz9a2 223 IAHCPNSNL--------SLS-----SGFLNVLEVLKHEVKIGLGTDVAGGYSYSMLDAIRRAVMVSNIL-LINKVNEKSL 288 (313)
T ss_dssp EEECHHHHH--------HTT-----CCCCCHHHHHHTTCEEEECCCTTTSCCCCHHHHHHHHHHHHHHH-HHTTSSSSCC
T ss_pred ccccchhhh--------hcc-----ccccchhhhhccCceEEEeCCCCCCCCCCHHHHHHHHHHHHHHH-hhcCCCCCCC
Confidence 999999875 223 4567899999999999999997543 479999998876311000 0001134469
Q ss_pred CHHHHHHHHcHHHHHhcccCCcccc
Q 008063 515 SLTDALIAHTLSAARACFLENDVGS 539 (579)
Q Consensus 515 s~~~al~~~T~npA~~lgl~~~~G~ 539 (579)
+++|+|+|+|+|+|+.||+++++||
T Consensus 289 ~~~e~l~~AT~ngA~aLg~~~~iGS 313 (313)
T d2uz9a2 289 TLKEVFRLATLGGSQALGLDGEIGN 313 (313)
T ss_dssp CHHHHHHHHTHHHHHHTTCTTTSSS
T ss_pred CHHHHHHHHHHHHHHHhCCCCCcCc
Confidence 9999999999999999999999997
|
| >d2i9ua2 c.1.9.9 (A:67-376) Guanine deaminase {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: SAH/MTA deaminase-like domain: Guanine deaminase species: Clostridium acetobutylicum [TaxId: 1488]
Probab=99.84 E-value=1.6e-20 Score=186.74 Aligned_cols=162 Identities=18% Similarity=0.125 Sum_probs=121.0
Q ss_pred CCCHHHHHHHHHHHHHCCCeEEEEecch-HHHHHHHHHHH------HHHHhcCCCCC-CceEeeccCCChhhHHHHhhCC
Q 008063 362 VMELESLLSMTMASDKSGLQVAIHAIGD-RANDLVLDMYK------SVVVTTGKRDQ-RFRIEHAQHLASGTAARFGDQG 433 (579)
Q Consensus 362 ~~~~~~l~~~~~~a~~~g~~i~iH~~g~-~~~~~~~~~~~------~~~~~~~~~~~-~~~i~H~~~~~~~~~~~~~~~~ 433 (579)
..+++.++++.+.++++++++++|+.+. .+.....+... ......+..+. +..+.|+.++++++++++++.|
T Consensus 140 ~~~~e~~~~~~~~a~~~~~~~~~H~~E~~~e~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~H~~~~~~~~i~~la~~g 219 (310)
T d2i9ua2 140 SCSNELMDGLGKLSYKYRLPVQSHLSENLDEIAVVKSLHKKSNFYGEVYDKFGLFGNTPTLMAHCIHSSKEEINLIKRNN 219 (310)
T ss_dssp GCCHHHHHHHHHHHHHHTCCEEEEESCCHHHHHHHHHHCTTCSSHHHHHHHTTCSSSSCEEEEECCSCCHHHHHHHHHTT
T ss_pred ccCHHHHHHHHHHhhccccceeehhccchHHHHHHHHHhcccccHHHHHHhcCCccCCceeeeeeeeechhHHHHHHhcC
Confidence 3789999999999999999999999854 33333333221 23444455544 4667899999999999999999
Q ss_pred cEEEecccccccchhHHHHhhChhhhhhhhhhHHHHHHCCCeeeecCCCCCC-CCCHHHHHHHHHcccCCCCCCCCCCCC
Q 008063 434 IVASMQPQHLLDDADSARKKLGVDRAERESYLFQSLLANNALLALGSDWPVA-DINPLCAIRTAMKRIPPGWDNAWIPSE 512 (579)
Q Consensus 434 i~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 512 (579)
+.+++||.++. .++ ...+|++.|.++|++|++|||+..+ +.+++++|+.++...............
T Consensus 220 ~~vv~cP~sn~--------~l~-----~g~~pv~~l~~~Gv~v~lGTD~~~~~~~dm~~~m~~a~~~~~~~~~~~~~~~~ 286 (310)
T d2i9ua2 220 VTIVHCPTSNF--------NLG-----SGMMPVRKYLNLGINVVLGSDISAGHTCSLFKVIAYAIQNSKIKWQESGKKDM 286 (310)
T ss_dssp CEEEECHHHHH--------HTT-----CCCCCHHHHHHTTCEEEECCCBTTBCCSCHHHHHHHHHHHHHHHHHHTTSCSC
T ss_pred CEEEEeecccc--------ccc-----CCcccccchhccCceEEEecCCCCCCCCCHHHHHHHHHHHHHHhhccccCCCC
Confidence 99999999875 334 4567999999999999999997543 479999998876421000000011345
Q ss_pred CCCHHHHHHHHcHHHHHhcccCCcccc
Q 008063 513 RISLTDALIAHTLSAARACFLENDVGS 539 (579)
Q Consensus 513 ~ls~~~al~~~T~npA~~lgl~~~~G~ 539 (579)
.++++|+|+|+|.|+|+.|| ++||
T Consensus 287 ~l~~~e~l~~aT~~gA~alG---riGS 310 (310)
T d2i9ua2 287 FLSTSEAFYMATKKGGSFFG---KVGS 310 (310)
T ss_dssp CCCHHHHHHHHTHHHHTTTS---SCSS
T ss_pred CCCHHHHHHHHHHHHHHHhc---CCCC
Confidence 68999999999999999998 4775
|
| >d1p1ma2 c.1.9.9 (A:50-330) Hypothetical protein TM0936, probable catalytic domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: SAH/MTA deaminase-like domain: Hypothetical protein TM0936, probable catalytic domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.83 E-value=2.7e-20 Score=182.33 Aligned_cols=234 Identities=18% Similarity=0.161 Sum_probs=158.8
Q ss_pred CCCHHHHHHHHHHHHHHHHhcCccEEEeCCcCCCCCccccchHHHHHHHHHHhhcCCCeeEEEEcc--C---ccc---hh
Q 008063 239 EVSVDERREALLRASNLALSRGVTTVVDFGRYYPGESVQLSWEDFADVYQWASYSEKMKIRVCLFF--P---LET---WS 310 (579)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~Git~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~--~---~~~---~~ 310 (579)
.+++++.+...+.+..+++++|+|++.|+... .+ ...+.+++. ++|..... . .+. .+
T Consensus 37 ~~t~e~~~~~~~~~~~e~l~~G~Ttv~d~~~~---------~~---~~~~a~~~~---g~r~~~~~~~~~~~~~~~~~~~ 101 (281)
T d1p1ma2 37 RLTEKMAYYGTILAQMEMARHGIAGFVDMYFH---------EE---WIAKAVRDF---GMRALLTRGLVDSNGDDGGRLE 101 (281)
T ss_dssp TCCHHHHHHHHHHHHHHHHTTTEEEEEEEESS---------HH---HHHHHHHHH---CCEEEEEEEECCBTTBCTTHHH
T ss_pred ccCHHHHHHHHHHHHHHHhhCCeEEEeeeccC---------cH---HHHHHHHHh---CCceEEeeeeeecCccccccHH
Confidence 46778889999999999999999999997431 11 233333332 23333221 1 111 11
Q ss_pred hHHHHHHhcCCCCCCceEEceEEEEEcCccCCCcccccCCCCCCCCCCcccCCCHHHHHHHHHHHHHCCCeEEEEecchH
Q 008063 311 SLADLINKTGHVLSDWVYLGGVKAFADGSLGSNSALFHEPYADEPHNYGLQVMELESLLSMTMASDKSGLQVAIHAIGDR 390 (579)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~g~k~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~i~iH~~g~~ 390 (579)
+..+....... ....+.. ++ ....++ .++++.++++.+.|++.|+++++|+.+..
T Consensus 102 e~~~~~~~~~~-~~~~i~~-~~-------------~~~~~~----------~~~~~~~~~~~~~A~~~~~~i~iH~~e~~ 156 (281)
T d1p1ma2 102 ENLKLYNEWNG-FEGRIFV-GF-------------GPHSPY----------LCSEEYLKRVFDTAKSLNAPVTIHLYETS 156 (281)
T ss_dssp HHHHHHHHHTT-GGGTEEE-EE-------------EECCTT----------TSCHHHHHHHHHHHHHTTCCEEEEESCST
T ss_pred HHHHHHHHhcC-ccCceEE-EE-------------ecccch----------hhhhhhhHHHHHHHhccCccccccccCCc
Confidence 22222211100 0111111 11 112222 37899999999999999999999997543
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCceEeeccCCChhhHHHHhhCCcEEEecccccccchhHHHHhhChhhhhhhhhhHHHHH
Q 008063 391 ANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLASGTAARFGDQGIVASMQPQHLLDDADSARKKLGVDRAERESYLFQSLL 470 (579)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~i~H~~~~~~~~~~~~~~~~i~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~ 470 (579)
....... .....|..+.+..+.|+.++++++++++++.|+.+++||.++. .++ ...+|++++.
T Consensus 157 ~e~~~~~----~l~~~g~l~~~~~~~H~~~~~~~di~~la~~~~~vv~cP~sn~--------~lg-----~~~~~~~~~~ 219 (281)
T d1p1ma2 157 KEEYDLE----DILNIGLKEVKTIAAHCVHLPERYFGVLKDIPFFVSHNPASNL--------KLG-----NGIAPVQRMI 219 (281)
T ss_dssp TCCCCTH----HHHTTTTTTSCEEEEECTTCCGGGTTTTTTSSEEEEECHHHHH--------HTT-----CCCCCHHHHH
T ss_pred ccchhHH----HHHHcCCCCccccccceeeecHHHHHHHHhcCCccccccchhh--------hhc-----ccchhHHHHH
Confidence 2111111 1334577788999999999999999999999999999999975 333 4566899999
Q ss_pred HCCCeeeecCCCCCC--CCCHHHHHHHHHcccCCCCCCCCCCCCCCCHHHHHHHHcHHHHHhcccCC
Q 008063 471 ANNALLALGSDWPVA--DINPLCAIRTAMKRIPPGWDNAWIPSERISLTDALIAHTLSAARACFLEN 535 (579)
Q Consensus 471 ~~Gi~v~~gsD~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~npA~~lgl~~ 535 (579)
++|+++++|||+..+ ..+++.+|+.+...... .....++++++|+|+|.|+|+.||++.
T Consensus 220 ~~Gv~v~LGTD~~~s~~~~d~~~em~~a~~~~~~------~~~~~~~~~~~l~~aT~~gA~aLGl~~ 280 (281)
T d1p1ma2 220 EHGMKVTLGTDGAASNNSLNLFFEMRLASLLQKA------QNPRNLDVNTCLKMVTYDGAQAMGFKS 280 (281)
T ss_dssp HTTCEEEECCCCTTTTSCCCHHHHHHHHHHHHHT------TCTTSSCHHHHHHHHTHHHHHHHTCSC
T ss_pred hCCCeEEEECCCCCCCCCcCHHHHHHHHHHHHHh------cCCCCCCHHHHHHHHHHHHHHHhCCCC
Confidence 999999999997654 47899999887642110 133458999999999999999999974
|
| >d1ra0a2 c.1.9.5 (A:56-375) Cytosine deaminase catalytic domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Cytosine deaminase catalytic domain domain: Cytosine deaminase catalytic domain species: Escherichia coli [TaxId: 562]
Probab=99.79 E-value=1.2e-19 Score=179.58 Aligned_cols=271 Identities=13% Similarity=0.088 Sum_probs=162.2
Q ss_pred cccCCCCCHHHHHHHHHHHHHHHHhcCccEEEeCCcCCCCCccccchHHHHHHHHHHhhcCCCeeEEEEccCccc--hhh
Q 008063 234 LPWIPEVSVDERREALLRASNLALSRGVTTVVDFGRYYPGESVQLSWEDFADVYQWASYSEKMKIRVCLFFPLET--WSS 311 (579)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~Git~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~~~~--~~~ 311 (579)
.+..+.+++++.++....+++.+++.|||++.+.+.... ................ .....+.......... ...
T Consensus 34 ~~~~~~~t~ed~~~~~~~~~~~~l~~GvTtv~~~~~~~~--~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 109 (320)
T d1ra0a2 34 AERKALLTHDDVKQRAWQTLKWQIANGIQHVRTHVDVSD--ATLTALKAMLEVKQEV--APWIDLQIVAFPQEGILSYPN 109 (320)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHHTTEEEEEEEEECCS--TTCHHHHHHHHHHHHH--TTTCEEEEEEECTTCSSSSTT
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHHhCCeEEEEecccccc--chHHHHHHHHHHHHhh--cccccccccccccccccCcHH
Confidence 345567888999999999999999999999999764322 1111222222222222 2233333333222111 122
Q ss_pred HHHHHHhcCCCCCCceEEceEEEEEcCccCCCcccccCCCCCCCCCCcccCCCHHHHHHHHHHHHHCCCeEEEEecch-H
Q 008063 312 LADLINKTGHVLSDWVYLGGVKAFADGSLGSNSALFHEPYADEPHNYGLQVMELESLLSMTMASDKSGLQVAIHAIGD-R 390 (579)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~g~k~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~i~iH~~g~-~ 390 (579)
................ ...+... .....+.+.++.+++.|++.|+++.+|+... .
T Consensus 110 ~~~~~~~~~~~~~~~~-------------------~~~~~~~-----~~~~~~~~~~~~~~~~A~~~g~~~~~h~~~~~~ 165 (320)
T d1ra0a2 110 GEALLEEALRLGADVV-------------------GAIPHFE-----FTREYGVESLHKTFALAQKYDRLIDVHCDEIDD 165 (320)
T ss_dssp HHHHHHHHHHTTCSEE-------------------CCCGGGS-----SSHHHHHHHHHHHHHHHHHHTCEEEEEECCSSC
T ss_pred HHHHHHHHHHhccccc-------------------ccCCCCC-----CCccccHHHHHHHHHHHHHcCCCeeeeecccch
Confidence 2222111100000000 0000000 0111357889999999999999999998633 1
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCceEeec-------cCCChhhHHHHhhCCcEEEecccccccchhHHHHhhChhhhhhhh
Q 008063 391 ANDLVLDMYKSVVVTTGKRDQRFRIEHA-------QHLASGTAARFGDQGIVASMQPQHLLDDADSARKKLGVDRAERES 463 (579)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~i~H~-------~~~~~~~~~~~~~~~i~~~~~p~~~~~~~~~~~~~l~~~~~~~~~ 463 (579)
........+......... ..+..+.|+ ....+++++++++.++.++.+|.++...+... ....+. ...
T Consensus 166 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~---~~~~~~-~~~ 240 (320)
T d1ra0a2 166 EQSRFVETVAALAHHEGM-GARVTASHTTAMHSYNGAYTSRLFRLLKMSGINFVANPLVNIHLQGRF---DTYPKR-RGI 240 (320)
T ss_dssp TTCCHHHHHHHHHHHHTC-GGGEEEEECGGGGGSCHHHHHHHHHHHHHHTCEEEECHHHHHHHTTTT---CCSSCC-CCC
T ss_pred hHHHhhhhHHHHHHHhhc-ccccccccceeccccchhhhHHHHHHhhhcCcEEEeccchhhhhcccc---cccccc-ccc
Confidence 112222222222111111 223344444 33446778889999999999998764222110 001111 356
Q ss_pred hhHHHHHHCCCeeeecCCCCCC------CCCHHHHHHHHHcccCCCCCCCCCCCCCCCHHHHHHHHcHHHHHhcccCCcc
Q 008063 464 YLFQSLLANNALLALGSDWPVA------DINPLCAIRTAMKRIPPGWDNAWIPSERISLTDALIAHTLSAARACFLENDV 537 (579)
Q Consensus 464 ~~l~~l~~~Gi~v~~gsD~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~npA~~lgl~~~~ 537 (579)
.+.+.+.+.|+++.+|||...+ ..++++.++.++.+.. ...++|+.|||+++|.|||++||+++
T Consensus 241 ~~~~~~~~~G~~v~~gtd~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~s~~eal~~aT~ngA~aLgl~~-- 310 (320)
T d1ra0a2 241 TRVKEMLESGINVCFGHDGVFDPWYPLGTANMLQVLHMGLHVCQ--------LMGYGQINDGLNLITHHSARTLNLQD-- 310 (320)
T ss_dssp CCHHHHHHTTCCEEECCBCSSBTTBSCCCCCHHHHHHHHHHHTT--------CCSHHHHHGGGGGGTHHHHHHTTCSS--
T ss_pred CchhhHhhcCceEeecCCcCCCCCCCCCChhHHHHHHHHHHHhc--------cCCCCCHHHHHHHHHHHHHHHhCCCC--
Confidence 7899999999999999996653 3688999998876542 23458999999999999999999997
Q ss_pred ccccCCCccc
Q 008063 538 GSLSPGKIAD 547 (579)
Q Consensus 538 G~I~~G~~AD 547 (579)
|+|+|||.||
T Consensus 311 Gsi~~Gk~AD 320 (320)
T d1ra0a2 311 YGIAAGNSAN 320 (320)
T ss_dssp CSSCTTSBCC
T ss_pred CccCCCCCcC
Confidence 9999999998
|
| >d2paja2 c.1.9.9 (A:70-405) Hypothetical protein GOS_1943094 {Environmental samples} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: SAH/MTA deaminase-like domain: Hypothetical protein GOS 1943094 species: Environmental samples
Probab=99.78 E-value=3.5e-18 Score=171.15 Aligned_cols=163 Identities=13% Similarity=0.096 Sum_probs=113.0
Q ss_pred CCHHHHHHHHHHHHHCCCeEEEEecchHHHHH-HHHHH----HHHHHhcCCCCCCceEeeccCCChhhHHHHhhCCcEEE
Q 008063 363 MELESLLSMTMASDKSGLQVAIHAIGDRANDL-VLDMY----KSVVVTTGKRDQRFRIEHAQHLASGTAARFGDQGIVAS 437 (579)
Q Consensus 363 ~~~~~l~~~~~~a~~~g~~i~iH~~g~~~~~~-~~~~~----~~~~~~~~~~~~~~~i~H~~~~~~~~~~~~~~~~i~~~ 437 (579)
++++.+++..+.+.+.+.++++|+.+...... ....+ .......+..+......|+...++.+++++++.+..+.
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~l~~~~~~~~ 236 (336)
T d2paja2 157 ISPREMRETAAVARRLGLRMHSHLSETVGYQDSAYSMYGKSPVAFCGEHDWLGSDVWYAHLVKVDADEIALLAQTGTGVA 236 (336)
T ss_dssp SCHHHHHHHHHHHHHTTCEEEEECC-------------CCCHHHHHHHTTCCSTTEEEESCCSCCHHHHHHHHHHTCEEE
T ss_pred cCHHHHHHHHhhhhccCCceeeeccccchhhHHHHHhcCCccccccccccccccccccccceecchHHHHHHhhccccce
Confidence 67999999999999999999999985543222 21111 11234455667788999999999999999999999999
Q ss_pred ecccccccchhHHHHhhChhhhhhhhhhHHHHHHCCCeeeecCCCCC--CCCCHHHHHHHHHcc--cCC--------CCC
Q 008063 438 MQPQHLLDDADSARKKLGVDRAERESYLFQSLLANNALLALGSDWPV--ADINPLCAIRTAMKR--IPP--------GWD 505 (579)
Q Consensus 438 ~~p~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD~~~--~~~~~~~~~~~~~~~--~~~--------~~~ 505 (579)
+||..+.. ++ ...++++.+.++|+++++|||+.. .+.+++.+|+.++.. ... ...
T Consensus 237 ~~p~~~~~--------~~-----~~~~~~~~l~~~Gv~valGTD~~~s~~~~d~~~emr~a~~~~r~~~~~~~~~~~~~~ 303 (336)
T d2paja2 237 HCPQSNGR--------LG-----SGICPVREMADAGVPVSIGVDGAASNEAADMISEVHMTWLAQRARLGMLAQPAYRGG 303 (336)
T ss_dssp ECHHHHHC--------C----------CCTTHHHHTCCEEECCCHHHHCSCCSHHHHHHHHHHHHHHTC-----------
T ss_pred eccchhhc--------cC-----ccccchhhHHhcCCeEEEEcCCCCCCCcccHHHHHHHHHHHHHHhhccccccccccc
Confidence 99998753 22 445588999999999999999543 347899999887632 111 011
Q ss_pred CCCCCCCCCCHHHHHHHHcHHHHHhcccCCcccc
Q 008063 506 NAWIPSERISLTDALIAHTLSAARACFLENDVGS 539 (579)
Q Consensus 506 ~~~~~~~~ls~~~al~~~T~npA~~lgl~~~~G~ 539 (579)
.......++|++|+|+++|+|+|++||+++ +|+
T Consensus 304 ~~~~~~~~~t~~eal~~aT~~gA~aLgld~-iGk 336 (336)
T d2paja2 304 SFEGGAGAASIAEVIHWGTAGGARVMGLDE-VGK 336 (336)
T ss_dssp --------CCHHHHHHHHTHHHHHHHTCTT-SSC
T ss_pred cccCCCCCCCHHHHHHHHHHHHHHHhCccc-cCC
Confidence 223356679999999999999999999974 663
|
| >d2bb0a2 c.1.9.17 (A:74-373) Imidazolonepropionase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Imidazolonepropionase-like domain: Imidazolonepropionase species: Bacillus subtilis [TaxId: 1423]
Probab=99.71 E-value=4.8e-17 Score=158.87 Aligned_cols=144 Identities=14% Similarity=0.131 Sum_probs=112.4
Q ss_pred CCHHHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhcCCCCCCceEeeccCCChhhHHHHhhCCcEEEecccc
Q 008063 363 MELESLLSMTMASDKSGLQVAIHAIGDRANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLASGTAARFGDQGIVASMQPQH 442 (579)
Q Consensus 363 ~~~~~l~~~~~~a~~~g~~i~iH~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~H~~~~~~~~~~~~~~~~i~~~~~p~~ 442 (579)
.+.+.+.++.+.+++.++++..|+.......... .....+ ...+.|+.++.++.++.+.+.+..+..||.+
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~-----~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 224 (300)
T d2bb0a2 154 FTVSQSRRYLQKAAEAGFGLKIHADEIDPLGGAE-----LAGKLK----AVSADHLVGTSDEGIKKLAEAGTIAVLLPGT 224 (300)
T ss_dssp BCHHHHHHHHHHHHHTTCEEEEEECSSSCCSHHH-----HHHHTT----CSEEEECTTCCHHHHHHHHHHTCEEEECHHH
T ss_pred CCHHHHHHHHHHHHhhhhcccccccchhhhHHHH-----HHHHhC----CceEEEeeeccHHHHHHHHhcCcceeecchh
Confidence 5788899999999999999999997332111111 111122 5689999999999999999999999999987
Q ss_pred cccchhHHHHhhChhhhhhhhhhHHHHHHCCCeeeecCCCCCC---CCCHHHHHHHHHcccCCCCCCCCCCCCCCCHHHH
Q 008063 443 LLDDADSARKKLGVDRAERESYLFQSLLANNALLALGSDWPVA---DINPLCAIRTAMKRIPPGWDNAWIPSERISLTDA 519 (579)
Q Consensus 443 ~~~~~~~~~~~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~a 519 (579)
+.. +.. ....+++.+++.|+++++|||.... ..+++.+++.++.. .|||++||
T Consensus 225 ~~~--------l~~----~~~~~~~~l~~~Gv~v~lgTD~~~~~~~~~~l~~~~~~a~~~------------~gl~~~ea 280 (300)
T d2bb0a2 225 TFY--------LGK----STYARARAMIDEGVCVSLATDFNPGSSPTENIQLIMSIAALH------------LKMTAEEI 280 (300)
T ss_dssp HHH--------TTC----CCCCCHHHHHHTTCCEEECCCBBTTTBCCCCHHHHHHHHHHH------------SCCCHHHH
T ss_pred hhh--------hhc----cccccHHHHHHCCCEEEEEeCCCCCCCchhhHHHHHHHHHHH------------cCCCHHHH
Confidence 641 111 2345789999999999999996332 26899999888643 35999999
Q ss_pred HHHHcHHHHHhcccCCcccc
Q 008063 520 LIAHTLSAARACFLENDVGS 539 (579)
Q Consensus 520 l~~~T~npA~~lgl~~~~G~ 539 (579)
|+++|+|||++||+++++|+
T Consensus 281 l~~aT~~~A~~lG~~~~~G~ 300 (300)
T d2bb0a2 281 WHAVTVNAAYAIGKGEEAGQ 300 (300)
T ss_dssp HHHTTHHHHHHTTCTTTSSC
T ss_pred HHHHHHHHHHHhCcchhhCc
Confidence 99999999999999999985
|
| >d2q09a2 c.1.9.17 (A:66-366) Probable 4-imidazolone-5-propanoate amidohydrolase GOS_1928421 {Environmental samples} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Imidazolonepropionase-like domain: Probable 4-imidazolone-5-propanoate amidohydrolase GOS 1928421 species: Environmental samples
Probab=99.67 E-value=2.6e-16 Score=152.31 Aligned_cols=144 Identities=19% Similarity=0.161 Sum_probs=108.8
Q ss_pred CCHHHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhcCCCCCCceEeeccCCChhhHHHHhhCCcEEEecccc
Q 008063 363 MELESLLSMTMASDKSGLQVAIHAIGDRANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLASGTAARFGDQGIVASMQPQH 442 (579)
Q Consensus 363 ~~~~~l~~~~~~a~~~g~~i~iH~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~H~~~~~~~~~~~~~~~~i~~~~~p~~ 442 (579)
.......+....+...+..+.+|+........ . ...... ....+.|+..+.+++++++++.++.+..||.+
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~-~----~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 225 (301)
T d2q09a2 155 FSLAQTEQVYLAADQYGLAVKGHMDQLSNLGG-S----TLAANF----GALSVDHLEYLDPEGIQALAHRGVVATLLPTA 225 (301)
T ss_dssp BCHHHHHHHHHHHHHTTCEEEEEESSSCCCSH-H----HHHHHT----TCSEEEECTTCCHHHHHHHHHHTCEEEECHHH
T ss_pred cchhhHHHHHHHHHHhcccceecccccchhHH-H----HHHHhc----CCceEeeeecCcHHHHHHHHHcCCCcccCccH
Confidence 34566677778888999999999863311110 0 111112 26689999999999999999999999999987
Q ss_pred cccchhHHHHhhChhhhhhhhhhHHHHHHCCCeeeecCCCCCC---CCCHHHHHHHHHcccCCCCCCCCCCCCCCCHHHH
Q 008063 443 LLDDADSARKKLGVDRAERESYLFQSLLANNALLALGSDWPVA---DINPLCAIRTAMKRIPPGWDNAWIPSERISLTDA 519 (579)
Q Consensus 443 ~~~~~~~~~~~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~a 519 (579)
+. .++. ...++++.+.++|+++++|||.... ..+++.+++.++.+ .|||++||
T Consensus 226 ~~--------~l~~----~~~~~~~~l~~aGv~v~lGTD~~~~~~~~~~l~~~~~~~~~~------------~glt~~ea 281 (301)
T d2q09a2 226 FY--------FLKE----TKLPPVVALRKAGVPMAVSSDINPGTAPIVSLRMAMNMACTL------------FGLTPVEA 281 (301)
T ss_dssp HH--------HTTC----CCCCCHHHHHHTTCCEEECCCCBTTTBCCCCHHHHHHHHHHH------------HCCCHHHH
T ss_pred Hh--------hhcc----cccCcHHHHHHCCCeEEEEeCCCCCCCCcchHHHHHHHHHHH------------cCCCHHHH
Confidence 64 2221 3355789999999999999995322 25788888887743 35999999
Q ss_pred HHHHcHHHHHhcccCCcccc
Q 008063 520 LIAHTLSAARACFLENDVGS 539 (579)
Q Consensus 520 l~~~T~npA~~lgl~~~~G~ 539 (579)
|+++|+|||+.||+++++|+
T Consensus 282 l~~aT~~~A~~lG~~~~iG~ 301 (301)
T d2q09a2 282 MAGVTRHAARALGEQEQLGQ 301 (301)
T ss_dssp HHHTTHHHHHHTTCTTTSSS
T ss_pred HHHHHHHHHHHhCcccccCc
Confidence 99999999999999998885
|
| >d2imra2 c.1.9.16 (A:91-398) Hypothetical protein DR0824 {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: DR0824-like domain: Hypothetical protein DR0824 species: Deinococcus radiodurans [TaxId: 1299]
Probab=99.67 E-value=2.9e-17 Score=161.96 Aligned_cols=149 Identities=14% Similarity=0.100 Sum_probs=114.9
Q ss_pred CCHHHHHHHHHHHHHCCCeEEEEecchHH-HHHHHHHH------------------------------HHHHHhcCCCCC
Q 008063 363 MELESLLSMTMASDKSGLQVAIHAIGDRA-NDLVLDMY------------------------------KSVVVTTGKRDQ 411 (579)
Q Consensus 363 ~~~~~l~~~~~~a~~~g~~i~iH~~g~~~-~~~~~~~~------------------------------~~~~~~~~~~~~ 411 (579)
++.+.+++....+.+.+.++..|+..... .....+.+ .+.....+..+.
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~g~l~~ 205 (308)
T d2imra2 126 VSHRLMRLLSDYAAGEGLPLQIHVAEHPTELEMFRTGGGPLWDNRMPALYPHTLAEVIGREPGPDLTPVRYLDELGVLAA 205 (308)
T ss_dssp BCHHHHHHHHHHHHHHTCCBEEEESCSHHHHHHHHHSCSTTGGGSCGGGSCSSHHHHHTSCCCTTCCHHHHHHHHTCGGG
T ss_pred cchHHHHHHhhhccccCccceeeeecccchhhhhhhhccchhhhhhhhhhHHHhhhhhhcccccCCCHHHHHHHCCCCCC
Confidence 67889999999999999999999985532 22222211 112233455567
Q ss_pred CceEeeccCCChhhHHHHhhCCcEEEecccccccchhHHHHhhChhhhhhhhhhHHHHHHCCCeeeecCCCCCC--CCCH
Q 008063 412 RFRIEHAQHLASGTAARFGDQGIVASMQPQHLLDDADSARKKLGVDRAERESYLFQSLLANNALLALGSDWPVA--DINP 489 (579)
Q Consensus 412 ~~~i~H~~~~~~~~~~~~~~~~i~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD~~~~--~~~~ 489 (579)
+..+.|+.+..+++++++++.+..+.+||.++. .++ ....+++++.++|+++++|||++.. ..++
T Consensus 206 ~~~~~h~~~~~~~~~~~~~~~g~~~~~~p~~~~--------~~~-----~~~~~~~~l~~aGv~valGTD~~~~~~~~~~ 272 (308)
T d2imra2 206 RPTLVHMVNVTPDDIARVARAGCAVVTCPRSNH--------HLE-----CGTFDWPAFAAAGVEVALGTDSVASGETLNV 272 (308)
T ss_dssp CCEEEECCSCCHHHHHHHHHHTCCEEECHHHHH--------HTT-----CCCCCHHHHHHTTCCEEECCCCHHHHSCSCT
T ss_pred CeeeeecccchhhhhhhhhhcCCcccccccccc--------ccc-----cccchHHHHHHCCCcEEEECCCCCCCCchhH
Confidence 889999999999999999999999999998865 222 4566889999999999999997533 4678
Q ss_pred HHHHHHHHcccCCCCCCCCCCCCCCCHHHHHHHHcHHHHHhcccCC
Q 008063 490 LCAIRTAMKRIPPGWDNAWIPSERISLTDALIAHTLSAARACFLEN 535 (579)
Q Consensus 490 ~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~npA~~lgl~~ 535 (579)
+.+|+.++... .++++.|+|+++|.|+|+.||++.
T Consensus 273 ~~e~~~a~~~~-----------~g~tp~e~l~~aT~~gA~~LGl~~ 307 (308)
T d2imra2 273 REEVTFARQLY-----------PGLDPRVLVRAAVKGGQRVVGGRT 307 (308)
T ss_dssp HHHHHHHHHHC-----------TTSCHHHHHHHHHHHHHHHHC--C
T ss_pred HHHHHHHHHHc-----------CCCCHHHHHHHHHHHHHHHhCCCC
Confidence 99998876532 359999999999999999999863
|
| >d2puza2 c.1.9.17 (A:80-380) Imidazolonepropionase {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Imidazolonepropionase-like domain: Imidazolonepropionase species: Agrobacterium tumefaciens [TaxId: 358]
Probab=99.66 E-value=1.2e-15 Score=148.40 Aligned_cols=144 Identities=20% Similarity=0.187 Sum_probs=111.5
Q ss_pred CCHHHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhcCCCCCCceEeeccCCChhhHHHHhhCCcEEEecccc
Q 008063 363 MELESLLSMTMASDKSGLQVAIHAIGDRANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLASGTAARFGDQGIVASMQPQH 442 (579)
Q Consensus 363 ~~~~~l~~~~~~a~~~g~~i~iH~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~H~~~~~~~~~~~~~~~~i~~~~~p~~ 442 (579)
...+.+..+.+.+.+.|+++..|+............ .. .....+.|+....+++..++.+.+..+..+|..
T Consensus 155 ~~~~~~~~~~~~a~~~g~~~~~h~~~~~~~~~~~~~-----~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (301)
T d2puza2 155 FSVKEIDRVFAAAQQRGLPVKLHAEQLSNLGGAELA-----AS----YNALSADHLEYLDETGAKALAKAGTVAVLLPGA 225 (301)
T ss_dssp BCHHHHHHHHHHHHHTTCCBEEEESSSSCCSHHHHH-----HH----TTCSEEEECTTCCHHHHHHHHHHTCEEEECHHH
T ss_pred cCHHHHHHHHHHHHHCCCceeeecccccchhHHHHH-----hh----hccceeeeeecchHHHHHHHHhcCCeeeeccch
Confidence 578899999999999999999999754322221111 11 125688899999999999999999999999876
Q ss_pred cccchhHHHHhhChhhhhhhhhhHHHHHHCCCeeeecCCCCCC---CCCHHHHHHHHHcccCCCCCCCCCCCCCCCHHHH
Q 008063 443 LLDDADSARKKLGVDRAERESYLFQSLLANNALLALGSDWPVA---DINPLCAIRTAMKRIPPGWDNAWIPSERISLTDA 519 (579)
Q Consensus 443 ~~~~~~~~~~~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~a 519 (579)
+.. ... ...++++.+.++|+++++|||.... ..++..+++.++.. .|+|++||
T Consensus 226 ~~~-------~~~-----~~~~~~~~~~~~Gv~v~lGTD~~~~~~~~~~l~~~~~~~~~~------------~gl~~~ea 281 (301)
T d2puza2 226 FYA-------LRE-----KQLPPVQALRDAGAEIALATDCNPGTSPLTSLLLTMNMGATL------------FRMTVEEC 281 (301)
T ss_dssp HHH-------HTC-----CCCCCHHHHHHHTCCEEECCCCCSSSCCBCCHHHHHHHHHHH------------HCCCHHHH
T ss_pred hhh-------hcc-----cccchHHHHHHCCCeEEEEeCCCCCCCccchHHHHHHHHHHH------------cCCCHHHH
Confidence 531 111 3356899999999999999996422 25788888776643 35999999
Q ss_pred HHHHcHHHHHhcccCCcccc
Q 008063 520 LIAHTLSAARACFLENDVGS 539 (579)
Q Consensus 520 l~~~T~npA~~lgl~~~~G~ 539 (579)
|+++|+|||+.||+++++||
T Consensus 282 l~~aT~~~A~~LGl~~~~GS 301 (301)
T d2puza2 282 LTATTRNAAKALGLLAETGT 301 (301)
T ss_dssp HHHTTHHHHHHTTCTTTSSS
T ss_pred HHHHHHHHHHHhCCCcCcCc
Confidence 99999999999999999997
|
| >d2p9ba2 c.1.9.17 (A:71-394) Uncharacterized protein BL1453 {Bifidobacterium longum [TaxId: 216816]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Imidazolonepropionase-like domain: Uncharacterized protein BL1453 species: Bifidobacterium longum [TaxId: 216816]
Probab=99.60 E-value=3.8e-14 Score=137.48 Aligned_cols=155 Identities=15% Similarity=0.059 Sum_probs=99.9
Q ss_pred cCCCHHHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhcCCCCCCceEeeccCCChhhHHHHhhCCcEEEecc
Q 008063 361 QVMELESLLSMTMASDKSGLQVAIHAIGDRANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLASGTAARFGDQGIVASMQP 440 (579)
Q Consensus 361 ~~~~~~~l~~~~~~a~~~g~~i~iH~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~H~~~~~~~~~~~~~~~~i~~~~~p 440 (579)
...+..............+.....|.............. .....|......+....+++.+......+
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (324)
T d2p9ba2 152 PQMSVEQMRAICDEAHQYGVIVGAHAQSPEGVRRSLLAG------------VDTIEHGSVLDDELIGMFRHNPNALRGYS 219 (324)
T ss_dssp -CCCHHHHHHHHHHHHHTTCCEEEEECSHHHHHHHHHHT------------CSEEEECCCCCHHHHHHHHCCTTSTTSCC
T ss_pred hhccHHHHHHHHHHHHHcCCccccccccchhhhHHHHhh------------hhhhhhhhhhhhhHHHHHHHcCccccccc
Confidence 335777888888899999999999987655444322211 33555666666766777666654322222
Q ss_pred cccccchhHHH-Hhh--------------ChhhhhhhhhhHHHHHHCCCeeeecCCCCCCC---CCHHHHHHHHHcccCC
Q 008063 441 QHLLDDADSAR-KKL--------------GVDRAERESYLFQSLLANNALLALGSDWPVAD---INPLCAIRTAMKRIPP 502 (579)
Q Consensus 441 ~~~~~~~~~~~-~~l--------------~~~~~~~~~~~l~~l~~~Gi~v~~gsD~~~~~---~~~~~~~~~~~~~~~~ 502 (579)
........... ..+ ..........+++.+++.|+++++|||.+... .+.+.+++.++.
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gv~v~~GtD~~~~~~~~~~l~~el~~~~~---- 295 (324)
T d2p9ba2 220 ALIPTLSAGLPLTLLGQDVTGITDIQLENSKNVVGGMVSGARQAHEAGLMIGVGTDTGMTFVPQYATWRELELLVA---- 295 (324)
T ss_dssp EEECCHHHHHHHHHSCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHTTCCBCCCCCTTSTTSCTTCHHHHHHHHHH----
T ss_pred eeeecccccchHHHhhhcccCcccccchhhhhchhhhHHHHHHHHHcCCeEEEEeCCCCCcChhhHHHHHHHHHHH----
Confidence 11111000000 000 00011144567899999999999999976443 467777776653
Q ss_pred CCCCCCCCCCCCCHHHHHHHHcHHHHHhcccCCcccc
Q 008063 503 GWDNAWIPSERISLTDALIAHTLSAARACFLENDVGS 539 (579)
Q Consensus 503 ~~~~~~~~~~~ls~~~al~~~T~npA~~lgl~~~~G~ 539 (579)
..|+|+.|||+++|+|||++||+++++||
T Consensus 296 --------~~Gls~~eaL~~aT~n~A~~lgl~d~~GS 324 (324)
T d2p9ba2 296 --------YAGFSPAEALHAATAVNASILGVDAETGS 324 (324)
T ss_dssp --------HHCCCHHHHHHHHTHHHHHHTTCTTTSSS
T ss_pred --------hcCCCHHHHHHHHHHHHHHHhCCCcCcCc
Confidence 23599999999999999999999999997
|
| >d2p9ba1 b.92.1.10 (A:9-70,A:395-450) Uncharacterized protein BL1453 {Bifidobacterium longum [TaxId: 216816]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Imidazolonepropionase-like domain: Uncharacterized protein BL1453 species: Bifidobacterium longum [TaxId: 216816]
Probab=99.53 E-value=3.3e-15 Score=122.66 Aligned_cols=73 Identities=19% Similarity=0.198 Sum_probs=60.6
Q ss_pred CccEEEEcCeEEeCCCCC--CeeeEEEEE-CCEEEEecChHHHHhhccCCCeEEeCCCCeeecccccccccccccCcc
Q 008063 44 EADLVVTNGVIFTGDDSL--LFADSMAIK-NGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHFIPGGLQ 118 (579)
Q Consensus 44 ~~~~likn~~v~~~~~~~--~~~~~v~I~-~GkI~~Ig~~~~~~~~~~~~~~viD~~g~~V~PG~ID~H~H~~~~~~~ 118 (579)
+.+++|+|++|+|+++.. ..+++|+|+ ||||.+||+..+... +.++++||++|++|||||||+|+|+...+..
T Consensus 3 ~~p~ai~na~iit~d~~~~v~~~~~ilI~~dG~I~~vg~~~~~~~--~~~~~viD~~Gk~v~PGlid~H~Hl~~~g~p 78 (118)
T d2p9ba1 3 VEPFALAHATIVTGDKAGTILRNMTIVVGADGRIEQVAPSIETSI--PAEYHYLDGTGKIVMLEVGKSADLLVLNANP 78 (118)
T ss_dssp CCCEEEEEEEEECCCTTCCEEEEEEEEECTTSBEEEEEEGGGCCC--CTTCEEEECTTCEEECCTTSBCCEEEESSCT
T ss_pred CccEEEEeeEEEeCCCCCceeeeEEEEEecCCeEEEEcccccccc--cceeEEEeccCcEEEeeecceeEEEEecCCC
Confidence 456999999999986543 468899996 799999998766543 4678999999999999999999999877653
|
| >d1gkpa2 c.1.9.6 (A:55-389) D-hydantoinase {Thermus sp. [TaxId: 275]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase), catalytic domain domain: D-hydantoinase species: Thermus sp. [TaxId: 275]
Probab=99.53 E-value=5.8e-15 Score=147.23 Aligned_cols=265 Identities=14% Similarity=0.048 Sum_probs=148.0
Q ss_pred HHHHHHHHHhcCccEEEeCCcCCCCCccccchHHHHH-HHHHHhhcCCCeeEEEEccCccchh---hHHHHHHhcCCCCC
Q 008063 249 LLRASNLALSRGVTTVVDFGRYYPGESVQLSWEDFAD-VYQWASYSEKMKIRVCLFFPLETWS---SLADLINKTGHVLS 324 (579)
Q Consensus 249 ~~~~~~~~~~~Git~v~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~v~~~~~~~~~~---~~~~~~~~~~~~~~ 324 (579)
+..+.+.++..|+|++.++.... +.....+..+ ....+.........++......+.. +..+....
T Consensus 21 ~~sgs~AAa~GGvTtv~dmpn~~----p~~~~~~~~~~~~~~a~~~~~~d~~~~~~~~~~~~~~~~el~~l~~~------ 90 (335)
T d1gkpa2 21 HETGSKAALMGGTTTYIEMCCPS----RNDDALEGYQLWKSKAEGNSYCDYTFHMAVSKFDEKTEGQLREIVAD------ 90 (335)
T ss_dssp HHHHHHHHHHTTEEEEEEEECCC----TTSCHHHHHHHHHHHHTTTCSSEEEEEEECCCCCTTHHHHHHHHHHT------
T ss_pred HHHHHHHHHhCCCeEEEECCCCC----CCCChHHHHHHHHHHHhcCCccceeeEEEEeccccccHHHHHHHHhh------
Confidence 45577889999999999985322 2223333333 3333433333444444333332222 22222221
Q ss_pred CceEEceEEEEEcCccCCCcccccCCCCCCCCCCcccCCCHHHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHH----
Q 008063 325 DWVYLGGVKAFADGSLGSNSALFHEPYADEPHNYGLQVMELESLLSMTMASDKSGLQVAIHAIGDRANDLVLDMYK---- 400 (579)
Q Consensus 325 ~~~~~~g~k~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~i~iH~~g~~~~~~~~~~~~---- 400 (579)
...++|++.... +....+++.+.+.++.+++.|..+.+|+....-.........
T Consensus 91 ---G~~~~k~~~~~~-------------------~~~~~d~~~l~~~~~~~~~~~~~v~~h~ed~~l~~~~~~~~~~~~~ 148 (335)
T d1gkpa2 91 ---GISSFKIFLSYK-------------------NFFGVDDGEMYQTLRLAKELGVIVTAHCENAELVGRLQQKLLSEGK 148 (335)
T ss_dssp ---TCCEEEEEECST-------------------TTTBCCHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHHHHHHHTTC
T ss_pred ---hccccccccccC-------------------CCccCCHHHHHHHHHHhhhcCCEEEEcCCcHHHHHHHHhhhhcccc
Confidence 123445553211 122368899999999999999999999964321111011000
Q ss_pred --------------------HHHHhcCCCCCCceEeeccCCCh-hhHHHHhhCC--cEEEecccccccchhHHH------
Q 008063 401 --------------------SVVVTTGKRDQRFRIEHAQHLAS-GTAARFGDQG--IVASMQPQHLLDDADSAR------ 451 (579)
Q Consensus 401 --------------------~~~~~~~~~~~~~~i~H~~~~~~-~~~~~~~~~~--i~~~~~p~~~~~~~~~~~------ 451 (579)
+.....-..+.+.++.|...... +.+...++.| +++.++|.+...+.+.+.
T Consensus 149 ~~~~~~~~~~p~~~E~~av~r~~~la~~~~~~~hi~HiSt~~~l~~i~~ak~~g~~it~e~~~~hl~l~~~~~~~~~~~~ 228 (335)
T d1gkpa2 149 TGPEWHEPSRPEAVEAEGTARFATFLETTGATGYVVHLSCKPALDAAMAAKARGVPIYIESVIPHFLLDKTYAERGGVEA 228 (335)
T ss_dssp CSGGGTTTTSCHHHHHHHHHHHHHHHHHHTCEEEECSCCSHHHHHHHHHHHHTTCCEEEEEEHHHHHCCGGGGGSCHHHH
T ss_pred cCccccccchhhhhHHHHHHHHHHHHHHhCcccchhhhhhhhhhhhhhhhhhcCceEEeecccchhhcCHHHHhcCCchh
Confidence 00000001234667777765432 3444455555 677788888765443321
Q ss_pred ---HhhChhhhhhhhhhHHHHHHCCCeeeecCCCCCCCCC-------HHHHHHHHHcccCCCCCCC---CCCCCCCCHHH
Q 008063 452 ---KKLGVDRAERESYLFQSLLANNALLALGSDWPVADIN-------PLCAIRTAMKRIPPGWDNA---WIPSERISLTD 518 (579)
Q Consensus 452 ---~~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD~~~~~~~-------~~~~~~~~~~~~~~~~~~~---~~~~~~ls~~~ 518 (579)
+..+|.|.++....+...+..|....++||...-+.. .+.....++.......... ...+.++++++
T Consensus 229 ~~~k~~PPlRs~~d~~~L~~al~~G~id~i~SDHaP~~~e~K~~~~~~~~~~~~G~~gle~~lplll~~~V~~g~lsl~~ 308 (335)
T d1gkpa2 229 MKYIMSPPLRDKRNQKVLWDALAQGFIDTVGTDHCPFDTEQKLLGKEAFTAIPNGIPAIEDRVNLLYTYGVSRGRLDIHR 308 (335)
T ss_dssp HTTCCSSCCCCTHHHHHHHHHHHTTSSCEEECCBCCCCHHHHGGGSSCGGGSCCCBCCTTTHHHHHHHHHTTSSSCCHHH
T ss_pred cceecccCCCCHHHHHHHHHHHhcCCccEEEecCCCCCHHHhccCCCChhhCCCChhHHHHHHHHHHHHHHHcCCCCHHH
Confidence 2346777667777888899999999999996432210 0000000000000000000 01345699999
Q ss_pred HHHHHcHHHHHhcccCCccccccCCCc
Q 008063 519 ALIAHTLSAARACFLENDVGSLSPGKI 545 (579)
Q Consensus 519 al~~~T~npA~~lgl~~~~G~I~~G~~ 545 (579)
++++++.|||+++|+.+++|+|++|++
T Consensus 309 ~v~~~S~nPAri~Gl~~~KG~i~~G~D 335 (335)
T d1gkpa2 309 FVDAASTKAAKLFGLFPRKGTIAVGSD 335 (335)
T ss_dssp HHHHHTHHHHHHTTCTTTSSSCCTTSB
T ss_pred HHHHHHHHHHHHhCCCCCCCeecCCCC
Confidence 999999999999999888999999985
|
| >d2ooda2 c.1.9.9 (A:73-397) Guanine deaminase {Bradyrhizobium japonicum [TaxId: 375]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: SAH/MTA deaminase-like domain: Guanine deaminase species: Bradyrhizobium japonicum [TaxId: 375]
Probab=99.53 E-value=3.8e-14 Score=139.76 Aligned_cols=164 Identities=16% Similarity=0.114 Sum_probs=110.3
Q ss_pred CCHHHHHHHHH-HHHHCCCeEEEEecch-HHHHHHHHHH------HHHHHhcCCCCCCceEeeccCCChhhHHHHhhCCc
Q 008063 363 MELESLLSMTM-ASDKSGLQVAIHAIGD-RANDLVLDMY------KSVVVTTGKRDQRFRIEHAQHLASGTAARFGDQGI 434 (579)
Q Consensus 363 ~~~~~l~~~~~-~a~~~g~~i~iH~~g~-~~~~~~~~~~------~~~~~~~~~~~~~~~i~H~~~~~~~~~~~~~~~~i 434 (579)
.+......... .+...++.+..|+... .+.....+.. .......+..+.+....|+.++++++..+++..+.
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (325)
T d2ooda2 139 ASPELLKACQRLKHEHPDCWVNTHISENPAECSGVLVEHPDCQDYLGVYEKFDLVGPKFSGGHGVYLSNNEFRRMSKKGA 218 (325)
T ss_dssp CCHHHHHHHHHHHHHCTTSEEEEECSCCHHHHHHHHHHCTTCSSHHHHHHTTTCCSTTEEEECCTTCCHHHHHHHHHHTC
T ss_pred cCHHHHHHHHhhHhhccCCceeeehhccHHHHHHHHHhcccCcchHHHHHhcCcccCceeeeeeeeechhhhhhhhcccc
Confidence 44555545444 4455788899998754 3333333221 11234455567788999999999999999999999
Q ss_pred EEEecccccccchhHHHHhhChhhhhhhhhhHHH--HHHCCCeeeecCCCCCC-CCCHHHHHHHHHccc------CC---
Q 008063 435 VASMQPQHLLDDADSARKKLGVDRAERESYLFQS--LLANNALLALGSDWPVA-DINPLCAIRTAMKRI------PP--- 502 (579)
Q Consensus 435 ~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~l~~--l~~~Gi~v~~gsD~~~~-~~~~~~~~~~~~~~~------~~--- 502 (579)
....+|...... + ....+... +.+.|+.+.+|||.... ..+++.+++.++.-. ..
T Consensus 219 ~~~~~~~~~~~~--------~-----~~~~~~~~~~~~~~gv~~~~gtD~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 285 (325)
T d2ooda2 219 AVVFCPCSNLFL--------G-----SGLFRLGRATDPEHRVKMSFGTDVGGGNRFSMISVLDDAYKVGMCNNTLLDGSI 285 (325)
T ss_dssp EEEECHHHHHHT--------T-----CCCCCHHHHTCTTSCCEEEECCCBTTBSCCCHHHHHHHHHHHHHHHHHHSSSSS
T ss_pred ccccccchhhcc--------c-----cccCcHHHHHHhhcCCceEeecCcccCCCccHHHHHHHHHHHHHhhcccccccc
Confidence 999998775421 1 12223333 35789999999997543 478888888775310 00
Q ss_pred ---CCCCCCCCCCCCCHHHHHHHHcHHHHHhcccCCcccc
Q 008063 503 ---GWDNAWIPSERISLTDALIAHTLSAARACFLENDVGS 539 (579)
Q Consensus 503 ---~~~~~~~~~~~ls~~~al~~~T~npA~~lgl~~~~G~ 539 (579)
..+.....+.++|+.|+|++||.|||++||+++++||
T Consensus 286 ~~~~~~~~~~~~~gl~~~eal~~AT~ngA~aLG~~d~iGS 325 (325)
T d2ooda2 286 DPSRKDLAEAERNKLSPYRGFWSVTLGGAEGLYIDDKLGN 325 (325)
T ss_dssp CGGGCCHHHHHHTCCCHHHHHHHTTHHHHHHTTCTTTSSS
T ss_pred cchhhhhhccccCCCCHHHHHHHHHHHHHHHhCCCcccCc
Confidence 0000111356899999999999999999999999997
|
| >d2qs8a2 c.1.9.18 (A:64-373) Xaa-Pro dipeptidase {Alteromonas macleodii [TaxId: 28108]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Zn-dependent arginine carboxypeptidase-like domain: Xaa-Pro dipeptidase species: Alteromonas macleodii [TaxId: 28108]
Probab=99.52 E-value=9.6e-14 Score=134.38 Aligned_cols=153 Identities=16% Similarity=0.128 Sum_probs=99.4
Q ss_pred cCCCHHHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhcCCCCCCceEeeccCCChhhHHHHhhCCcEEEecc
Q 008063 361 QVMELESLLSMTMASDKSGLQVAIHAIGDRANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLASGTAARFGDQGIVASMQP 440 (579)
Q Consensus 361 ~~~~~~~l~~~~~~a~~~g~~i~iH~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~H~~~~~~~~~~~~~~~~i~~~~~p 440 (579)
.....+........+.+.+.....|..+...+...++.. .....|.............+.+.....++
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (310)
T d2qs8a2 148 PQFTQEEVDAVVSAAKDYGMWVAVHAHGAEGMKRAIKAG------------VDSIEHGTFMDLEAMDLMIENGTYYVPTI 215 (310)
T ss_dssp BCSCHHHHHHHHHHHHHTTCEEEEEECSHHHHHHHHHHT------------CSEEEECTTCCHHHHHHHHHHTCEEECCH
T ss_pred hhhhHHHHHHHHHHHHHcCCcccccccchHHHHHHHHhc------------ccccccccccchhHHHHHHhcCceeccch
Confidence 335677888888899999999999998766555444321 23445555555555555555554444333
Q ss_pred cccccchhHH---------HHhhChhhhhhhhhhHHHHHHCCCeeeecCCCCCCC-CCHHHHHHHHHcccCCCCCCCCCC
Q 008063 441 QHLLDDADSA---------RKKLGVDRAERESYLFQSLLANNALLALGSDWPVAD-INPLCAIRTAMKRIPPGWDNAWIP 510 (579)
Q Consensus 441 ~~~~~~~~~~---------~~~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 510 (579)
.......... ..............+++.++++|+++++|||.+..+ .+.+.+++.++.
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~lGTD~~~~~~~~~~~el~~~~~------------ 283 (310)
T d2qs8a2 216 SAGEFVAEKSKIDNFFPEIVRPKAASVGPQISDTFRKAYEKGVKIAFGTDAGVQKHGTNWKEFVYMVE------------ 283 (310)
T ss_dssp HHHHHHHHHTTSTTSSCTTTHHHHHHHHHHHHHHHHHHHHHTCCBCCCCCBTTBCTTCTTHHHHHHHH------------
T ss_pred hhhhhhhhhccccccCchhhhhhHHHhhhhhhHHHHHHHHCCCeEEEecCCCCCCccHHHHHHHHHHH------------
Confidence 2211000000 000001111245668999999999999999987554 456677766653
Q ss_pred CCCCCHHHHHHHHcHHHHHhcccCCccc
Q 008063 511 SERISLTDALIAHTLSAARACFLENDVG 538 (579)
Q Consensus 511 ~~~ls~~~al~~~T~npA~~lgl~~~~G 538 (579)
.|+|++|||+++|+|||++||+++++|
T Consensus 284 -~Gls~~eaL~~aT~~~A~~LGl~d~iG 310 (310)
T d2qs8a2 284 -NGMPAMKAIQSATMETAKLLRIEDKLG 310 (310)
T ss_dssp -TTCCHHHHHHHTTHHHHHHTTCTTTSS
T ss_pred -cCCCHHHHHHHHHHHHHHHhCcCCCcC
Confidence 469999999999999999999999887
|
| >d1yrra1 b.92.1.5 (A:1-53,A:351-382) N-acetylglucosamine-6-phosphate deacetylase, NagA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: N-acetylglucosamine-6-phosphate deacetylase, NagA domain: N-acetylglucosamine-6-phosphate deacetylase, NagA species: Escherichia coli [TaxId: 562]
Probab=99.50 E-value=8e-15 Score=113.71 Aligned_cols=64 Identities=25% Similarity=0.401 Sum_probs=55.2
Q ss_pred EEEEcCeEEeCCCCCCeeeEEEEECCEEEEecChHHHHhhccCCCeEEeCCCCeeeccccccccccccc
Q 008063 47 LVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHFIPG 115 (579)
Q Consensus 47 ~likn~~v~~~~~~~~~~~~v~I~~GkI~~Ig~~~~~~~~~~~~~~viD~~g~~V~PG~ID~H~H~~~~ 115 (579)
++|+|++|+|+++ ...+++|+|++|||.+|++..+. +++.++||++|++|+|||||.|+|....
T Consensus 2 ~al~n~rI~dg~~-~~~~~~i~i~~g~I~~Ig~~~~~----p~~~~viDl~G~~l~PGlid~hvH~~~~ 65 (85)
T d1yrra1 2 YALTQGRIFTGHE-FLDDHAVVIADGLIKSVCPVAEL----PPEIEQRSLNGAILSPTLAAGKVANLTA 65 (85)
T ss_dssp EEEESSEEECSSC-EESSEEEEEETTEEEEEEEGGGS----CTTCCEEECTTCEEEESCCTTSBCCEEE
T ss_pred eEEEeeEEECCCC-cEeccEEEEeccEEEEEcccccc----cceeEEEecCCcEEEcccEecceeeccc
Confidence 5789999999865 34677999999999999987664 3678999999999999999999998654
|
| >d3be7a2 c.1.9.18 (A:57-359) Zn-dependent arginine carboxypeptidase {Unidentified organism [TaxId: 32644]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Zn-dependent arginine carboxypeptidase-like domain: Zn-dependent arginine carboxypeptidase species: Unidentified organism [TaxId: 32644]
Probab=99.50 E-value=2e-13 Score=131.57 Aligned_cols=151 Identities=16% Similarity=0.158 Sum_probs=92.7
Q ss_pred cCCCHHHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhcC---------CCCCCceEeeccCCChhhHHHHhh
Q 008063 361 QVMELESLLSMTMASDKSGLQVAIHAIGDRANDLVLDMYKSVVVTTG---------KRDQRFRIEHAQHLASGTAARFGD 431 (579)
Q Consensus 361 ~~~~~~~l~~~~~~a~~~g~~i~iH~~g~~~~~~~~~~~~~~~~~~~---------~~~~~~~i~H~~~~~~~~~~~~~~ 431 (579)
.........+....+...+.....|...................... .........|.....+........
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (303)
T d3be7a2 143 KQFTLEEMKAIVDEAHNHGMKVAAHAHGLIGIKAAIKAGVDSVEHASFIDDETIDMAIKNNTVLSMDIFVSDYILGEGAK 222 (303)
T ss_dssp BCSCHHHHHHHHHHHHHTTCEEEEEECSHHHHHHHHHHTCSEEEECTTCCHHHHHHHHHTTCEEECCCSTHHHHHTTTTT
T ss_pred cchhhHHHHHHHHHHHHhCcchhhhhhhhhhHHHHHHHhhhhhhhhccchhhhhhhcccceeEEEecccchhhhhhhhhh
Confidence 44567888888999999999999888655433333322110000000 000122334444444444444443
Q ss_pred CCcEEEecccccccchhHHHHhhChhhhhhhhhhHHHHHHCCCeeeecCCCCCCC-CCHHHHHHHHHcccCCCCCCCCCC
Q 008063 432 QGIVASMQPQHLLDDADSARKKLGVDRAERESYLFQSLLANNALLALGSDWPVAD-INPLCAIRTAMKRIPPGWDNAWIP 510 (579)
Q Consensus 432 ~~i~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 510 (579)
.+.....++..+. .......+++.++++|+++++|||.+..+ .+...+++.++.
T Consensus 223 ~~~~~~~~~~~~~-------------~~~~~~~~~~~l~~aGv~v~lGTD~~~~~~~~~~~el~~~~~------------ 277 (303)
T d3be7a2 223 AGIREESLNKERL-------------VGKKQRENFMNAHRRGAIITFGTDAGIFDHGDNAKQFAYMVE------------ 277 (303)
T ss_dssp TTCCHHHHHHHHH-------------HHHHHHHHHHHHHHHTCCEECCCCBTTBCTTCGGGHHHHHHH------------
T ss_pred ccCcHHHHhHHHH-------------HhhhhHHHHHHHHHCCCeEEEEeCCCCcccHHHHHHHHHHHH------------
Confidence 3333333332221 11155668899999999999999976554 456666766543
Q ss_pred CCCCCHHHHHHHHcHHHHHhcccCCccc
Q 008063 511 SERISLTDALIAHTLSAARACFLENDVG 538 (579)
Q Consensus 511 ~~~ls~~~al~~~T~npA~~lgl~~~~G 538 (579)
.|+|+.|||+++|+|||++||++| +|
T Consensus 278 -~Gls~~eaL~~aT~n~A~~lGl~D-~G 303 (303)
T d3be7a2 278 -WGMTPLEAIQASTIKTATLFGIEN-IG 303 (303)
T ss_dssp -TTCCHHHHHHTTTHHHHHHHTCSS-CS
T ss_pred -cCCCHHHHHHHHHHHHHHHhCCcc-cC
Confidence 469999999999999999999986 66
|
| >d2r8ca2 c.1.9.18 (A:58-368) Uncharacterized protein EAJ56179 {Unidentified organism [TaxId: 32644]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Zn-dependent arginine carboxypeptidase-like domain: Uncharacterized protein EAJ56179 species: Unidentified organism [TaxId: 32644]
Probab=99.48 E-value=9e-13 Score=127.57 Aligned_cols=153 Identities=14% Similarity=0.065 Sum_probs=98.8
Q ss_pred ccCCCHHHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhcCCCCCCceEeeccCCChhhHHHHhhCCcEEEec
Q 008063 360 LQVMELESLLSMTMASDKSGLQVAIHAIGDRANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLASGTAARFGDQGIVASMQ 439 (579)
Q Consensus 360 ~~~~~~~~l~~~~~~a~~~g~~i~iH~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~H~~~~~~~~~~~~~~~~i~~~~~ 439 (579)
............+..+.+.+.....|..........+. .......+...............+......
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (311)
T d2r8ca2 150 VFGYSEDEIRAIVAEAQGRGTYVLAHAYTPAAIARAVR------------CGVRTIEHGNLIDDETARLVAEHGAYVVPT 217 (311)
T ss_dssp CBCSCHHHHHHHHHHHHHTTCCEEEEECSHHHHHHHHH------------TTCSEEEECTTCCHHHHHHHHHTTCEEECC
T ss_pred cccccHHHHHHHHHHHHHhccccccccchhHHHHHHHH------------hhhcccccccchhhHHHHHhhhhccccccc
Confidence 34467788888899999999999999875543333222 113355666666666666666666555444
Q ss_pred ccccccchhHHH--------HhhChhhhhhhhhhHHHHHHCCCeeeecCCCCCCC-CCHHHHHHHHHcccCCCCCCCCCC
Q 008063 440 PQHLLDDADSAR--------KKLGVDRAERESYLFQSLLANNALLALGSDWPVAD-INPLCAIRTAMKRIPPGWDNAWIP 510 (579)
Q Consensus 440 p~~~~~~~~~~~--------~~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 510 (579)
+........... .............+++.|+++|+++++|||.+..+ ...+.+++.+.
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGv~v~~GTD~~~~~~~~~~~el~~~~------------- 284 (311)
T d2r8ca2 218 LVTYDALASEGEKYGLPPESIAKIADVHGAGLHSIEIMKRAGVKMGFGTDLLGEAQRLQSDEFRILA------------- 284 (311)
T ss_dssp THHHHHHHHHTTTTTCCHHHHTTSTTTGGGHHHHHHHHHHTTCEECCCCCCCGGGGGGTTHHHHHHT-------------
T ss_pred chhhhhhHhhhhhcCCchhhhhhHHHHHHhhhHHHHHHHHCCCeEEEEeCCCCCchHHHHHHHHHHH-------------
Confidence 333211100000 00001111255668999999999999999986543 34455554432
Q ss_pred CCCCCHHHHHHHHcHHHHHhcccCCccc
Q 008063 511 SERISLTDALIAHTLSAARACFLENDVG 538 (579)
Q Consensus 511 ~~~ls~~~al~~~T~npA~~lgl~~~~G 538 (579)
.|+|+.|||+++|.|||++||+++++|
T Consensus 285 -~gls~~eaL~~ATi~~A~aLg~~d~iG 311 (311)
T d2r8ca2 285 -EVLSPAEVIASATIVSAEVLGMQDKLG 311 (311)
T ss_dssp -TTSCHHHHHHHTTHHHHHHTTCTTTSS
T ss_pred -cCCCHHHHHHHHHHHHHHHHCCCcCCC
Confidence 269999999999999999999999887
|
| >d1kcxa2 c.1.9.6 (A:67-400) Dihydropyrimidinase related protein-1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase), catalytic domain domain: Dihydropyrimidinase related protein-1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.47 E-value=2.8e-14 Score=141.90 Aligned_cols=261 Identities=13% Similarity=0.056 Sum_probs=139.6
Q ss_pred HHHHHHHHHhcCccEEEeCCcCCCCCccccchHHHHHHHHHHhhcCCCeeEEEEccCccch---hhHHHHHHhcCCCCCC
Q 008063 249 LLRASNLALSRGVTTVVDFGRYYPGESVQLSWEDFADVYQWASYSEKMKIRVCLFFPLETW---SSLADLINKTGHVLSD 325 (579)
Q Consensus 249 ~~~~~~~~~~~Git~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~~~~~---~~~~~~~~~~~~~~~~ 325 (579)
+..+.+.+++.|+|+|.++....| +..+.+.+....+..+........++......+. .+..+....
T Consensus 23 ~~tgs~AAa~GGvTtv~~mPnt~P---~~~~~~~~~~~~~~a~~~s~~d~~~~~~~~~~~~~~~~el~~l~~~------- 92 (334)
T d1kcxa2 23 FFQGTKAALAGGTTMIIDHVVPEP---GSSLLTSFEKWHEAADTKSCCDYSLHVDITSWYDGVREELEVLVQD------- 92 (334)
T ss_dssp HHHHHHHHHHTTEEEEEEEECCCT---TCCHHHHHHHHHHHHHHHCSSEEEEEEEECCCCTTHHHHHHHHHHT-------
T ss_pred HHHHHHHHHcCCceEEEECCCCCC---CCCCHHHHHHHHHHhcccCcceeeEeeeeccCCcchHHHHHHHHHh-------
Confidence 456788899999999999864322 2223334444444444444444444443332222 222222221
Q ss_pred ceEEceEEEEEcCccCCCcccccCCCCCCCCCCcccCCCHHHHHHHHHHHHHCCCeEEEEecchHHHHHHHH--------
Q 008063 326 WVYLGGVKAFADGSLGSNSALFHEPYADEPHNYGLQVMELESLLSMTMASDKSGLQVAIHAIGDRANDLVLD-------- 397 (579)
Q Consensus 326 ~~~~~g~k~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~i~iH~~g~~~~~~~~~-------- 397 (579)
....++|++... . +....+.+.+.+.++.+++.+..+.+||....-.....+
T Consensus 93 -~g~~~~ki~~~~-------------~------~~~~~~~~~l~~~~~~~~~~~~~v~~H~Ed~~l~~~~~~~~~~~g~~ 152 (334)
T d1kcxa2 93 -KGVNSFQVYMAY-------------K------DLYQMSDSQLYEAFTFLKGLGAVILVHAENGDLIAQEQKRILEMGIT 152 (334)
T ss_dssp -TCCCEEEEESCS-------------T------TTTCCCHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHHHHHHHTTCC
T ss_pred -ccCceeeeeecc-------------C------CCcccCHHHHHHHHHHHhccCceeEEecCCHHHHhccccchhhcCCc
Confidence 112344554211 0 112357888999999999999999999964321111100
Q ss_pred ----------------HHHHHHHhcCCCCCCceEeeccCCCh-hhHHHHhhCC--cEEEecccccccchhHH--------
Q 008063 398 ----------------MYKSVVVTTGKRDQRFRIEHAQHLAS-GTAARFGDQG--IVASMQPQHLLDDADSA-------- 450 (579)
Q Consensus 398 ----------------~~~~~~~~~~~~~~~~~i~H~~~~~~-~~~~~~~~~~--i~~~~~p~~~~~~~~~~-------- 450 (579)
+..+...-.-..+.+.++.|...... +.+.+.++.| ++..++|++.......+
T Consensus 153 ~~~~~~~~rp~~aE~~ai~r~~~la~~~g~~~hi~HiSt~~~ve~i~~ak~~g~~vt~e~~~~~l~l~~~~~~~~~~~~~ 232 (334)
T d1kcxa2 153 GPEGHALSRPEELEAEAVFRAIAIAGRINCPVYITKVMSKSAADIIALARKKGPLVFGEPIAASLGTDGTHYWSKNWAKA 232 (334)
T ss_dssp STHHHHHHSCTHHHHHHHHHHHHHHHHHTCCEEEEEECCHHHHHHHHHHHHHSCCEEEEEBHHHHHCCGGGGGCSSHHHH
T ss_pred chhhccCCCCHHHHHHHHHHHHHHHhhcCCceeeccccchHHHHHHHHHhccccceeeccchhheeecccccccCChhHh
Confidence 00110000001246889999765432 3444445544 56677887754332221
Q ss_pred HH--hhChhh-hhhhhhhHHHHHHCCCeeeecCCCCCCCCC-------HHHHHHHHHcccCCCCCCC---CCCCCCCCHH
Q 008063 451 RK--KLGVDR-AERESYLFQSLLANNALLALGSDWPVADIN-------PLCAIRTAMKRIPPGWDNA---WIPSERISLT 517 (579)
Q Consensus 451 ~~--~l~~~~-~~~~~~~l~~l~~~Gi~v~~gsD~~~~~~~-------~~~~~~~~~~~~~~~~~~~---~~~~~~ls~~ 517 (579)
.. ..+|.| .......+...++.|.+..++||....+.. .+.....++.......... +..+.++|++
T Consensus 233 ~~~~~~pPlr~~~~d~eaL~~~l~~G~Id~I~SDHaP~~~e~K~~~~~~f~~ap~Gi~g~e~~l~~llt~~V~~g~isl~ 312 (334)
T d1kcxa2 233 AAFVTSPPLSPDPTTPDYLTSLLACGDLQVTGSGHCPYSTAQKAVGKDNFTLIPEGVNGIEERMTVVWDKAVATGKMDEN 312 (334)
T ss_dssp HHTCCSSCCCSCTTHHHHHHHHHHHTSSCCCBCCBCCCCHHHHGGGSSCGGGSCCCBCCTTTHHHHHHHHHTTTTSSCHH
T ss_pred cceEeeeccCchhhhHHHHHHHhhcCCcceEecCCCCCCHHHhccCCCChhhCCCCcccHHHHHHHHHHHHHHcCCCCHH
Confidence 11 233443 224556778888999999999997532210 0000000010000000000 1144569999
Q ss_pred HHHHHHcHHHHHhcccCCcccc
Q 008063 518 DALIAHTLSAARACFLENDVGS 539 (579)
Q Consensus 518 ~al~~~T~npA~~lgl~~~~G~ 539 (579)
+++++.|.|||+.+||..++|+
T Consensus 313 ~~v~~~s~nPA~i~gL~p~KGr 334 (334)
T d1kcxa2 313 QFVAVTSTNAAKIFNLYPRKGR 334 (334)
T ss_dssp HHHHHHTHHHHHHHTCTTTSSC
T ss_pred HHHHHHHHHHHHHhCCCCCCCC
Confidence 9999999999999999766785
|
| >d2ftwa2 c.1.9.6 (A:60-393) Dihydropyrimidine amidohydrolase Pyd2 {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase), catalytic domain domain: Dihydropyrimidine amidohydrolase Pyd2 species: Dictyostelium discoideum [TaxId: 44689]
Probab=99.47 E-value=3.1e-14 Score=141.54 Aligned_cols=261 Identities=13% Similarity=0.084 Sum_probs=139.3
Q ss_pred HHHHHHHHHhcCccEEEeCCcCCCCCccccchHHHHHHHHHHhhcCCCeeEEEEccCccchhhHHH---HHHhcCCCCCC
Q 008063 249 LLRASNLALSRGVTTVVDFGRYYPGESVQLSWEDFADVYQWASYSEKMKIRVCLFFPLETWSSLAD---LINKTGHVLSD 325 (579)
Q Consensus 249 ~~~~~~~~~~~Git~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~~~~~~~~~~---~~~~~~~~~~~ 325 (579)
+..+.+.+...|+|+|.++....+ +..+.+.+....+...........++............+ .....
T Consensus 23 ~~tgs~AAa~GGvTtv~~mpn~~p---~~~~~~~~~~~~~~a~~~~~~d~~~~~~~~~~~~~~~~e~~~l~~~~------ 93 (334)
T d2ftwa2 23 FDIGTQAAVAGGTTFIIDFVIPTR---GQSLLEAYDQWKKWADEKVNCDYSLHVAITWWSEQVSREMEILVKER------ 93 (334)
T ss_dssp HHHHHHHHHHTTEEEEEEEECCCT---TCCHHHHHHHHHHHHHTTCSSEEEEEEECCSCCHHHHHHHHHHHHHS------
T ss_pred HHHHHHHHHhCCCeEEEECCCCCC---CCCcHHHHHHHHHHHhcCCcceeeEEEeecCcchhhhHhHHHHHHhc------
Confidence 455778899999999999864322 222333333344344444444444444333323222222 22211
Q ss_pred ceEEceEEEEEcCccCCCcccccCCCCCCCCCCcccCCCHHHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHH------
Q 008063 326 WVYLGGVKAFADGSLGSNSALFHEPYADEPHNYGLQVMELESLLSMTMASDKSGLQVAIHAIGDRANDLVLDMY------ 399 (579)
Q Consensus 326 ~~~~~g~k~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~i~iH~~g~~~~~~~~~~~------ 399 (579)
...++|++.... . ....+.+.+.+.++.+++.+..+.+|+....-.....+..
T Consensus 94 --g~~~~k~~~~~~-------------~------~~~~~~~~l~~~~~~~~~~~~~~~~H~E~~~~~~~~~~~~~~~g~~ 152 (334)
T d2ftwa2 94 --GVNSFKCFMAYK-------------N------SFMVTDQEMYHIFKRCKELGAIAQVHAENGDMVFEGQKKMLEMGIT 152 (334)
T ss_dssp --CCCEEEEESSCT-------------T------TTBCCHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHHHHHHHTTCC
T ss_pred --Cccccceeeccc-------------c------ccccccHHHHHHHHHHhhcCCceeecchhHHHHhhcchhhhccCCC
Confidence 122344442110 0 1125678899999999999999999997432222111100
Q ss_pred ------------------HHHHHhcCCCCCCceEeeccCCCh-hhHHHHhhC--CcEEEecccccccchhHHH-------
Q 008063 400 ------------------KSVVVTTGKRDQRFRIEHAQHLAS-GTAARFGDQ--GIVASMQPQHLLDDADSAR------- 451 (579)
Q Consensus 400 ------------------~~~~~~~~~~~~~~~i~H~~~~~~-~~~~~~~~~--~i~~~~~p~~~~~~~~~~~------- 451 (579)
.+.....-..+.+.++.|+..... +.++..++. .+++.+||++...+.+.+.
T Consensus 153 ~~~~~~~~rp~~aE~~~v~r~~~la~~~~~~lhi~HiSt~~~~~~i~~ak~~G~~vt~e~~ph~L~l~~~~~~~~d~~~~ 232 (334)
T d2ftwa2 153 GPEGHELSRPEALEAEATNRAIVIADSVCTPVYIVHVQSIGAADVICKHRKEGVRVYGEPIAAGLGVDGSHMWNHDWRHA 232 (334)
T ss_dssp STHHHHHHSCTHHHHHHHHHHHHHHHHHTCCEEECSCCCHHHHHHHHHHHHTTCCEEECCBHHHHHCCGGGGGCSSHHHH
T ss_pred CcccccccCcHHHHHHHHHHHHHHHHhhccceeeccccchhhhhhHHHhcccCCceeeccccceeeccHHHHhccchhhc
Confidence 000000001245778888755332 333444444 4677889998765443321
Q ss_pred ---HhhChhhhh-hhhhhHHHHHHCCCeeeecCCCCCCCCC-------HHHHHHHHHcccCCCCCCC---CCCCCCCCHH
Q 008063 452 ---KKLGVDRAE-RESYLFQSLLANNALLALGSDWPVADIN-------PLCAIRTAMKRIPPGWDNA---WIPSERISLT 517 (579)
Q Consensus 452 ---~~l~~~~~~-~~~~~l~~l~~~Gi~v~~gsD~~~~~~~-------~~~~~~~~~~~~~~~~~~~---~~~~~~ls~~ 517 (579)
...+|.|.+ +....+...+..|....++||...-+.+ .|.....++.......... +..+.+++++
T Consensus 233 ~~~~~~PPlR~~~~d~~~L~~~l~~G~Id~iaSDHaPh~~e~K~~~~~~f~~a~~Gi~glet~lpll~~~~v~~g~lsl~ 312 (334)
T d2ftwa2 233 AAFVMGPPIRPDPRTKGVLMDYLARGDLDCVGTDNCTFCADQKAMGKDDFTKIPNGVNGVEDRMSIVWENGVNTGKLTWC 312 (334)
T ss_dssp HTTCCSSCCCCCTTHHHHHHHHHHHTSSCCCBCCBCCCCHHHHGGGTTCGGGSCCCBCCTTTHHHHHHHHHTTTTSSCHH
T ss_pred cceEeeccccccHhhhhhHHHHhhCCCccceecCCCCCCHHHHhcCCCChhhCCCCccCHHHHHHHHHHHHHHcCCCCHH
Confidence 134555532 3445677788899999999997432210 0100000000000000000 1145569999
Q ss_pred HHHHHHcHHHHHhcccCCcccc
Q 008063 518 DALIAHTLSAARACFLENDVGS 539 (579)
Q Consensus 518 ~al~~~T~npA~~lgl~~~~G~ 539 (579)
+++++.+.|||+++||.+++|+
T Consensus 313 ~~v~~~s~nPAki~gL~p~KGr 334 (334)
T d2ftwa2 313 QFVRATSSERARIFNIYPRKGR 334 (334)
T ss_dssp HHHHHHTHHHHHHTTCTTTSSC
T ss_pred HHHHHHhHHHHHHhCCCCCCCC
Confidence 9999999999999999777885
|
| >d1ynya2 c.1.9.6 (A:53-384) D-hydantoinase {Bacillus sp. AR9 [TaxId: 301298]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase), catalytic domain domain: D-hydantoinase species: Bacillus sp. AR9 [TaxId: 301298]
Probab=99.46 E-value=6.2e-13 Score=132.06 Aligned_cols=260 Identities=17% Similarity=0.127 Sum_probs=145.1
Q ss_pred HHHHHHHHHhcCccEEEeCCcCCCCCccccchHHHHHHHHHHhh-cCCCeeEEEEccCccchhhHHHHHHhcCCCCCCce
Q 008063 249 LLRASNLALSRGVTTVVDFGRYYPGESVQLSWEDFADVYQWASY-SEKMKIRVCLFFPLETWSSLADLINKTGHVLSDWV 327 (579)
Q Consensus 249 ~~~~~~~~~~~Git~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (579)
+..+.+.++..|+|+|.++... .|.....+..+......+ .......++......+.....+....... .
T Consensus 22 ~~tgs~AAa~GGvTtv~~mpnt----~p~~~~~~~~~~~~~~a~~~~~~d~~~~~~~~~~~~~~~~el~~~~~~-----~ 92 (332)
T d1ynya2 22 FFTGTRAAAFGGTTSIVDFCLT----KKGESLKSAIATWHEKARGKAVIDYGFHLMIAEANDQVLEELESVISS-----E 92 (332)
T ss_dssp HHHHHHHHHHTTEEEEEEEECC----CSSCCHHHHHHHHHHHHTTTCSSEEEEEEECSCCCHHHHHHHHHHHHT-----S
T ss_pred HHHHHHHHHhCCCcEEEECCCC----CCCCCCHHHHHHHHHHHhccCccceeeEEEEeccccchhHHHHHHHhh-----h
Confidence 3456777899999999998643 233344444444444333 33333333333333332222222221111 1
Q ss_pred EEceEEEEEcCccCCCcccccCCCCCCCCCCcccCCCHHHHHHHHHHHHHCCCeEEEEecchHHHHHHHH----------
Q 008063 328 YLGGVKAFADGSLGSNSALFHEPYADEPHNYGLQVMELESLLSMTMASDKSGLQVAIHAIGDRANDLVLD---------- 397 (579)
Q Consensus 328 ~~~g~k~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~i~iH~~g~~~~~~~~~---------- 397 (579)
...++|++.... .....+.+.+.++++.+++.|..+.+|+....-++...+
T Consensus 93 g~~~~k~~~~~~-------------------~~~~~d~~~l~~~l~~~~~~~~~~~~h~Ed~~~~~~~~~~~~~~g~~~~ 153 (332)
T d1ynya2 93 GITSLKVFMAYK-------------------NVFQADDETLFKTLVKAKELGALVQVHAENGDVLDYLTKKALAEGNTDP 153 (332)
T ss_dssp CCCEEEEESCST-------------------TTTCCCHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHHHHHHHTTCCST
T ss_pred cccceeeeeccc-------------------cccccCHHHHHHHHHHHhhcCCEEeechhhHHHHHHHHHHHHhcCCCCc
Confidence 123455553211 011247888999999999999999999864321111111
Q ss_pred --------------HHH---HHHHhcCCCCCCceEeeccCCCh-hhHHHHhhCC--cEEEecccccccchhHH-------
Q 008063 398 --------------MYK---SVVVTTGKRDQRFRIEHAQHLAS-GTAARFGDQG--IVASMQPQHLLDDADSA------- 450 (579)
Q Consensus 398 --------------~~~---~~~~~~~~~~~~~~i~H~~~~~~-~~~~~~~~~~--i~~~~~p~~~~~~~~~~------- 450 (579)
+.. .+.... +.+.++.|...... +.++..++.| +++.+||++...+.+.+
T Consensus 154 ~~~~~~~p~~aE~~ai~r~~~la~~~---g~~~hi~hiSt~~~~~~i~~ak~~g~~vt~e~~ph~L~l~~~~~~~~~~~g 230 (332)
T d1ynya2 154 IYHAYTRPPEAEGEATGRAIALTALA---GSQLYVVHVSCASAVQRIAEAREKGWNVYGETCPQYLALDVSIMDQPDFEG 230 (332)
T ss_dssp THHHHTSCHHHHHHHHHHHHHHHHHH---TCCEEECSCCSHHHHHHHHHHHHTTCCEEEEECHHHHHCCGGGGCCSSSGG
T ss_pred hhccccchhhHHHHHHHHHHHhhhhh---cccccccccccchHHHHHHHHHHhCCCceeccccccccCCHHHHhhhhccC
Confidence 001 111112 34778888654332 4444455554 78899999976544332
Q ss_pred --HHhhChhhhhhhhhhHHHHHHCCCeeeecCCCCCCCCC--------HHHHHHHHHcccCCCCCC---CCCCCCCCCHH
Q 008063 451 --RKKLGVDRAERESYLFQSLLANNALLALGSDWPVADIN--------PLCAIRTAMKRIPPGWDN---AWIPSERISLT 517 (579)
Q Consensus 451 --~~~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD~~~~~~~--------~~~~~~~~~~~~~~~~~~---~~~~~~~ls~~ 517 (579)
.+..+|.|..+....+...++.|....++||....+.. .|.....++......... .+..+.+|+++
T Consensus 231 ~~~k~~PPLRs~~dr~aL~~al~~G~id~i~SDHaP~~~~~kk~~~~~~f~~a~~G~~g~e~~l~~~~~~~v~~g~lsl~ 310 (332)
T d1ynya2 231 AKYVWSPPLREKWNQEVLWSALKNGILQTVGSDHCPFNFRGQKELGRGDFTKIPNGGPLIEDRLTILYSEGVRQGRISLN 310 (332)
T ss_dssp GGGCCSSCCCCTTHHHHHHHHHHTTSSCEECCCBCCCCTTTTGGGGTTCGGGSCCCBCCTTTHHHHHHHHTTTTTSSCHH
T ss_pred ceeEecCccccHHHHHHHHHHHhcCCeeEEEecCCCCCHHHHhhccCCCcccCCCccchHHHHHHHHHHHHHHcCCCCHH
Confidence 23456666556677788889999999999996543211 111100000000000000 01245669999
Q ss_pred HHHHHHcHHHHHhcccCCcccc
Q 008063 518 DALIAHTLSAARACFLENDVGS 539 (579)
Q Consensus 518 ~al~~~T~npA~~lgl~~~~G~ 539 (579)
++++++|.|||++||+.+++|+
T Consensus 311 ~~v~~~s~nPAki~GL~p~KGt 332 (332)
T d1ynya2 311 QFVDISSTKAAKLFGMFPRKGT 332 (332)
T ss_dssp HHHHHHTHHHHHHTTCTTTSSS
T ss_pred HHHHHHhHHHHHHhCCCCCCCC
Confidence 9999999999999999888886
|
| >d1onwa1 b.92.1.7 (A:1-62,A:347-389) Isoaspartyl dipeptidase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Isoaspartyl dipeptidase domain: Isoaspartyl dipeptidase species: Escherichia coli [TaxId: 562]
Probab=99.42 E-value=4.4e-14 Score=114.16 Aligned_cols=66 Identities=14% Similarity=0.291 Sum_probs=54.7
Q ss_pred CccEEEEcCeEEeCCCCCCeeeEEEEECCEEEEecChHHHHhhccCCCeEEeCCCCeeeccccccccccc
Q 008063 44 EADLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHFI 113 (579)
Q Consensus 44 ~~~~likn~~v~~~~~~~~~~~~v~I~~GkI~~Ig~~~~~~~~~~~~~~viD~~g~~V~PG~ID~H~H~~ 113 (579)
+..++|||++|++++.. ...+|+|+||||++|++..+... .++.++||++|++|+|||||+|.|..
T Consensus 7 ~~~llikna~i~~~~~~--~~~dI~I~~g~I~~I~~~~~~~~--~~~~~vID~~G~~v~PG~ID~H~h~~ 72 (105)
T d1onwa1 7 AGFTLLQGAHLYAPEDR--GICDVLVANGKIIAVASNIPSDI--VPNCTVVDLSGQILCPEILPGNDADL 72 (105)
T ss_dssp GCCEEEESCEEESSSEE--EECEEEEETTEEEEEETTCCTTS--SSSCEEEECTTCEEEESCCTTSBCCE
T ss_pred CCCEEEECcEEEcCCCC--eeeeEEEECCEEEEeccCccccc--CCCCeEEcCCCCEEeCCEeecccCcc
Confidence 44699999999998542 56799999999999998655433 36789999999999999999997654
|
| >d1nfga2 c.1.9.6 (A:52-381) D-hydantoinase {Burkholderia pickettii [TaxId: 329]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase), catalytic domain domain: D-hydantoinase species: Burkholderia pickettii [TaxId: 329]
Probab=99.42 E-value=1.3e-12 Score=129.43 Aligned_cols=250 Identities=19% Similarity=0.149 Sum_probs=143.2
Q ss_pred HHHHHHHHHhcCccEEEeCCcCCCCCccccchHHHHHHHHH-HhhcCCCeeEEEEccCccchhhHHHHHHhcCCCCCCce
Q 008063 249 LLRASNLALSRGVTTVVDFGRYYPGESVQLSWEDFADVYQW-ASYSEKMKIRVCLFFPLETWSSLADLINKTGHVLSDWV 327 (579)
Q Consensus 249 ~~~~~~~~~~~Git~v~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (579)
+..+.+.++..|+|++.++... .|.....+....... .+........++............+. ..... .
T Consensus 22 ~~tgs~AAa~GGvTtv~~mpn~----~p~~~~~e~~~~~~~~a~~~s~~d~~~~~~~~~~~~~~~~el-~~~~~-----~ 91 (330)
T d1nfga2 22 FATATVAAACGGTTTIVDFCQQ----DRGHSLAEAVAKWDGMAGGKSAIDYGYHIIVLDPTDSVIEEL-EVLPD-----L 91 (330)
T ss_dssp HHHHHHHHHHTTEEEEEEEEEC----CTTSCHHHHHHHHHHHHTTTCSSEEEEEEECSSCCHHHHHHT-TTGGG-----G
T ss_pred HHHHHHHHHcCCCEEEEECCCC----CCCCCCHHHHHHHHHHHhcCCeeeecceEEEeccchhhHHHH-hhhhh-----h
Confidence 4557788999999999998643 223333333333333 33333333333332222222222222 11111 1
Q ss_pred EEceEEEEEcCccCCCcccccCCCCCCCCCCcccCCCHHHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHH--------
Q 008063 328 YLGGVKAFADGSLGSNSALFHEPYADEPHNYGLQVMELESLLSMTMASDKSGLQVAIHAIGDRANDLVLDMY-------- 399 (579)
Q Consensus 328 ~~~g~k~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~i~iH~~g~~~~~~~~~~~-------- 399 (579)
...++|++.... +....+...+.+.++.+++.+..+.+|+....-+....+.+
T Consensus 92 Gv~~~k~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~h~E~~~~~~~~~~~~~~~g~~~~ 152 (330)
T d1nfga2 92 GITSFKVFMAYR-------------------GMNMIDDVTLLKTLDKAVKTGSLVMVHAENGDAADYLRDKFVAEGKTAP 152 (330)
T ss_dssp TCCEEEEESSST-------------------TTTBCCHHHHHHHHHHHHHHTCEEEEECCCHHHHHHHHHHHHHTTCCST
T ss_pred cccceeeecccc-------------------ccCCCCcHHHHHHHHHHHhcCCceeechHHHHHHHHHhhhhhccCCcCc
Confidence 123445543211 11225778899999999999999999997432222111110
Q ss_pred ----------------HHHHHhcCCCCCCceEeeccCCCh-hhHHHHhhC--CcEEEecccccccchhHH---------H
Q 008063 400 ----------------KSVVVTTGKRDQRFRIEHAQHLAS-GTAARFGDQ--GIVASMQPQHLLDDADSA---------R 451 (579)
Q Consensus 400 ----------------~~~~~~~~~~~~~~~i~H~~~~~~-~~~~~~~~~--~i~~~~~p~~~~~~~~~~---------~ 451 (579)
.+...-.-..+.++++.|...-.. +.+.+.++. .+++.+||++...+.+.+ .
T Consensus 153 ~~~~~~rp~~aE~~av~r~~~la~~~~~~lhi~HiSt~~~~~~i~~ak~~g~~vt~Et~ph~L~l~~~d~~~~~~~~~~~ 232 (330)
T d1nfga2 153 IYHALSRPPRVEAEATARALALAEIVNAPIYIVHVTCEESLEEVMRAKSRGVRALAETCTHYLYLTKEDLERPDFEGAKY 232 (330)
T ss_dssp HHHHHTSCHHHHHHHHHHHHHHHHHHTCCEEECCCCSHHHHHHHHHHHHHTCCEEECEEGGGGTCCGGGGGCTTTGGGGG
T ss_pred hhcccccChHHHHHHHHHHHHHHHHhCCeeeechhcchHHHHHHHHHHhcCCcccccccchhhhhhhhhhhcccccCcee
Confidence 000000001245778888654322 333334444 478899999987655433 2
Q ss_pred HhhChhhhhhhhhhHHHHHHCCCeeeecCCCCCCCC--------C--------------HHHHHHHHHcccCCCCCCCCC
Q 008063 452 KKLGVDRAERESYLFQSLLANNALLALGSDWPVADI--------N--------------PLCAIRTAMKRIPPGWDNAWI 509 (579)
Q Consensus 452 ~~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD~~~~~~--------~--------------~~~~~~~~~~~~~~~~~~~~~ 509 (579)
+..+|.|..+....+...+..|....++||.+.... . .+..+...+
T Consensus 233 k~~PPLR~~~d~~aL~~~l~dG~Id~i~SDHaP~~~~~~~~~~~~~f~~ap~G~~gle~~lp~l~~~v------------ 300 (330)
T d1nfga2 233 VFTPPARAKKDHDVLWNALRNGVFETVSSDHCSWLFKGHKDRGRNDFRAIPNGAPGVEERLMMVYQGV------------ 300 (330)
T ss_dssp CCSSCCCCHHHHHHHHHHHHTTCCSCEECCBCCCCTTTTTTTTTTCGGGSCCCBCCTTTHHHHHHHHH------------
T ss_pred eecCcCCcHHHHHHHhhhhcCCceeeecCCCCCccchhhHhhccCCHhHCCCCcCHHHHHHHHHHHHH------------
Confidence 245666766777788899999999999999643211 0 112222232
Q ss_pred CCCCCCHHHHHHHHcHHHHHhcccCCcccc
Q 008063 510 PSERISLTDALIAHTLSAARACFLENDVGS 539 (579)
Q Consensus 510 ~~~~ls~~~al~~~T~npA~~lgl~~~~G~ 539 (579)
.+.+|++++++++++.|||+.|||.+++|+
T Consensus 301 ~~~~l~l~~~v~~~S~nPAki~gL~p~KGt 330 (330)
T d1nfga2 301 NEGRISLTQFVELVATRPAKVFGMFPQKGT 330 (330)
T ss_dssp HTTSSCHHHHHHHHTHHHHHHTTCTTTSSS
T ss_pred HcCCCCHHHHHHHHHHHHHHHhCCCCCCCC
Confidence 345699999999999999999999878886
|
| >d4ubpc2 c.1.9.2 (C:132-434,C:484-570) alpha-subunit of urease, catalytic domain {Bacillus pasteurii [TaxId: 1474]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: alpha-subunit of urease, catalytic domain domain: alpha-subunit of urease, catalytic domain species: Bacillus pasteurii [TaxId: 1474]
Probab=99.37 E-value=2.2e-12 Score=121.41 Aligned_cols=253 Identities=18% Similarity=0.145 Sum_probs=150.1
Q ss_pred HHHHHHhcCccEEEeCCcCCCCCccccc-hHHHHHHHHHHhhcCCCeeEEEEccCccc-h-hhHHHHHHhcCCCCCCceE
Q 008063 252 ASNLALSRGVTTVVDFGRYYPGESVQLS-WEDFADVYQWASYSEKMKIRVCLFFPLET-W-SSLADLINKTGHVLSDWVY 328 (579)
Q Consensus 252 ~~~~~~~~Git~v~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~v~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~ 328 (579)
.++.++.+|+||+...|.+...+.-.++ .+.-+.+.+.++....+++++.++.-... . ....+.+.. +
T Consensus 14 q~~~al~sGiTT~~GgGtGpa~gt~att~tpG~~~i~~ml~a~d~~P~N~g~~gkGn~s~~~~l~eqi~a-G-------- 84 (390)
T d4ubpc2 14 QVDVALANGITTLFGGGTGPAEGSKATTVTPGPWNIEKMLKSTEGLPINVGILGKGHGSSIAPIMEQIDA-G-------- 84 (390)
T ss_dssp HHHHHHHTTEEEEEEECCSSCHHHHHSSCCCHHHHHHHHHHHHTTCSSEEEEEEECCCSSHHHHHHHHHH-T--------
T ss_pred HHHHHHhcCCeeeecCccCCCCCCCCcccCCCHHHHHHHHHhhhhCCcceeeeeccccCChHHHHHHHHh-h--------
Confidence 4567999999999987654322211211 23345566667777888999888654432 2 233333332 1
Q ss_pred EceEEEEEcCccCCCcccccCCCCCCCCCCcccCCCHHHHHHHHHHHHHCCCeEEEEec---chHHHHHHHHHHHHHHHh
Q 008063 329 LGGVKAFADGSLGSNSALFHEPYADEPHNYGLQVMELESLLSMTMASDKSGLQVAIHAI---GDRANDLVLDMYKSVVVT 405 (579)
Q Consensus 329 ~~g~k~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~i~iH~~---g~~~~~~~~~~~~~~~~~ 405 (579)
+....+++.|. .++..+...+..|.++++++.+|.. +.+-++..+++++-
T Consensus 85 -------------a~GlKiHEDwG----------atpa~id~~L~vad~~dvqv~iHtDtlNE~gfve~T~~a~~g---- 137 (390)
T d4ubpc2 85 -------------AAGLKIHEDWG----------ATPASIDRSLTVADEADVQVAIHSDTLNEAGFLEDTLRAING---- 137 (390)
T ss_dssp -------------CCEEEEEGGGC----------CCHHHHHHHHHHHHHHTCEEEEECCTTCSSCCHHHHHHHHTT----
T ss_pred -------------hheeecccccc----------cCHHHHHHHHHHhhccCceEEEecCCcccceehhhHHHHhCC----
Confidence 22233455554 7899999999999999999999975 33445555555421
Q ss_pred cCCCCCCceEeeccCC------C-hhhHHHHhhCCcEEEecccccccchhHHHH---h------hCh------------h
Q 008063 406 TGKRDQRFRIEHAQHL------A-SGTAARFGDQGIVASMQPQHLLDDADSARK---K------LGV------------D 457 (579)
Q Consensus 406 ~~~~~~~~~i~H~~~~------~-~~~~~~~~~~~i~~~~~p~~~~~~~~~~~~---~------l~~------------~ 457 (579)
...|..+. + ++.++.....++-.+.+.....+......+ + |.+ -
T Consensus 138 --------RtiH~~HtEGaGGGHaPDii~~~g~~nvLpsSTnPT~Pyt~nt~~EhldM~MvcHhL~~~ipeDvafAesRi 209 (390)
T d4ubpc2 138 --------RVIHSFHVEGAGGGHAPDIMAMAGHPNVLPSSTNPTRPFTVNTIDEHLDMLMVCHHLKQNIPEDVAFADSRI 209 (390)
T ss_dssp --------CCEEETTTTSTTSSSTTTGGGGGGSTTEEEBCCSTTSSCBTTHHHHHHHHHHHHHTCCTTSHHHHHHHHHHS
T ss_pred --------ceeecccCCCCCCCCCchhHHhcCCCcccCCCCCCCCCCccCchhhhcCeEEeeccCCCCChhhHHHHhhcc
Confidence 23343332 2 444444444555554433333322222111 1 111 1
Q ss_pred hhhhhhhhHHHHHHCCCeeeecCCCCCCC------CCHHHHHHHHHc-ccCCCCCCCCCCCCCCCHHHHHHHHcHHHHHh
Q 008063 458 RAERESYLFQSLLANNALLALGSDWPVAD------INPLCAIRTAMK-RIPPGWDNAWIPSERISLTDALIAHTLSAARA 530 (579)
Q Consensus 458 ~~~~~~~~l~~l~~~Gi~v~~gsD~~~~~------~~~~~~~~~~~~-~~~~~~~~~~~~~~~ls~~~al~~~T~npA~~ 530 (579)
|. +....-..|+|.|..-.++||+.... ...|+....|-. |..........++ .-...=+..+|+|||-.
T Consensus 210 R~-eTiaAEdvLHD~GaiSi~sSDsQaMGRvgEvi~Rtwq~A~kmk~qrG~l~~d~~~~DN--~RvkRYiAKyTINPAIa 286 (390)
T d4ubpc2 210 RP-ETIAAEDILHDLGIISMMSTDALAMGRAGEMVLRTWQTADKMKKQRGPLAEEKNGSDN--FRLKRYVSKYTINPAIA 286 (390)
T ss_dssp CH-HHHHHHHHHHHTTSSCBCCCCBTTSSCTTCHHHHHHHHHHHHHHHHCSCTTCCSSCCH--HHHHHHHHTTTHHHHHH
T ss_pred cc-hhhhhHHHhhhcCceeeeccCcccccccchHHHhHHHHHHHHHHhccCCCCccccCCC--chhhhcccccccChhHh
Confidence 22 44555677899999999999977654 345666655533 2221111111111 22233466889999999
Q ss_pred cccCCccccccCCCcccEEEe
Q 008063 531 CFLENDVGSLSPGKIADFVIL 551 (579)
Q Consensus 531 lgl~~~~G~I~~G~~ADlvvl 551 (579)
.|+++.+||||+||.||.+++
T Consensus 287 hGish~VGSvE~GKlADG~a~ 307 (390)
T d4ubpc2 287 QGIAHEVGSIEEGKFADGDLI 307 (390)
T ss_dssp HTCTTTSSSCCTTSBCCTTHH
T ss_pred cCcccccCcccCCcccCCccc
Confidence 999999999999999995444
|
| >d1gkra2 c.1.9.6 (A:55-379) L-hydantoinase {Arthrobacter aurescens [TaxId: 43663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase), catalytic domain domain: L-hydantoinase species: Arthrobacter aurescens [TaxId: 43663]
Probab=99.36 E-value=5.1e-12 Score=125.04 Aligned_cols=261 Identities=14% Similarity=0.113 Sum_probs=138.9
Q ss_pred HHHHHHHHhcCccEEEeCCcCCCCCccccchHHHHHHHHHHhhcCCCeeEEEEccCccchhhHHHHHHhcCCCCCCceEE
Q 008063 250 LRASNLALSRGVTTVVDFGRYYPGESVQLSWEDFADVYQWASYSEKMKIRVCLFFPLETWSSLADLINKTGHVLSDWVYL 329 (579)
Q Consensus 250 ~~~~~~~~~~Git~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (579)
..+.+.++..|+|+|.++....| +..+.+.+.+..+.+........-++........+........ + .
T Consensus 22 ~tgs~AAa~GGvTtv~~mPnt~P---~~~~~~~~~~~~~~a~~~~~~d~~~~~~~~~~~~~~~~~~~~~-g--------~ 89 (325)
T d1gkra2 22 ELDSESAAVGGITTIIEMPITFP---PTTTLDAFLEKKKQAGQRLKVDFALYGGGVPGNLPEIRKMHDA-G--------A 89 (325)
T ss_dssp HHHHHHHHHHTEEEEEECSCSSS---CSCSHHHHHHHHHHHHHHCSSEEEEEEECCTTCHHHHHHHHHT-T--------C
T ss_pred HHHHHHHHccCCceEEECCCCCC---CcCCHHHHHHHHHHhccCCccccccccccccccHHHHHhhhhc-c--------c
Confidence 44677899999999999965433 2334444445555554444333333333322222222222211 1 1
Q ss_pred ceEEEEEcCccCCCcccccCCCCCCCCCCcccCCCHHHHHHHHHHHHHCCCeEEEEecchHHHHHHHHH-----------
Q 008063 330 GGVKAFADGSLGSNSALFHEPYADEPHNYGLQVMELESLLSMTMASDKSGLQVAIHAIGDRANDLVLDM----------- 398 (579)
Q Consensus 330 ~g~k~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~i~iH~~g~~~~~~~~~~----------- 398 (579)
.+++.+...... + .....++..+.++++.+++.|..+.+|+....-.....+.
T Consensus 90 ~~~~~~~~~~~~-----------~-----~~~~~~d~~l~~~~~~~~~~~~~~~~H~E~~~l~~~~~~~~~~~g~~~~~~ 153 (325)
T d1gkra2 90 VGFKSMMAASVP-----------G-----MFDAVSDGELFEIFQEIAACGSVIVVHAENETIIQALQKQIKAAGGKDMAA 153 (325)
T ss_dssp CEEEEESSCSBT-----------T-----TBCBCCHHHHHHHHHHHHHHTCEEEEECCCHHHHHHHHHHHHHTTCCSHHH
T ss_pred ceeccccccccC-----------C-----ccccccHHHHHHHHHHHHhcCCceEeccCcHHHHHHHHHHhhhcCCccccc
Confidence 123332111100 0 0122567889999999999999999998643211110000
Q ss_pred -------------HHHHHHhcCCCCCCceEeeccCCCh-hhHHHHhhC--CcEEEecccccccchhHHHH------hhCh
Q 008063 399 -------------YKSVVVTTGKRDQRFRIEHAQHLAS-GTAARFGDQ--GIVASMQPQHLLDDADSARK------KLGV 456 (579)
Q Consensus 399 -------------~~~~~~~~~~~~~~~~i~H~~~~~~-~~~~~~~~~--~i~~~~~p~~~~~~~~~~~~------~l~~ 456 (579)
........-..+.+.++.|...... +.++..++. .+++.+||++...+.+.+.. ..++
T Consensus 154 ~~~~rp~~aE~~~v~r~~~la~~~~~~~hi~hiSs~~~l~~i~~ak~~g~~vt~et~ph~L~lt~~~~~~~~~~~k~~PP 233 (325)
T d1gkra2 154 YEASQPVFQENEAIQRALLLQKEAGCRLIVLHVSNPDGVELIHQAQSEGQDVHCESGPQYLNITTDDAERIGPYMKVAPP 233 (325)
T ss_dssp HHHHSCHHHHHHHHHHHHHHHHHHCCEEEECCCCSHHHHHHHHHHHHTTCCEEEEECHHHHSCCGGGHHHHGGGGCCSSC
T ss_pred ccccCchHHHHHHHHHHHHHhhhcCcceeccccccHHHHHhhhhhhhcCCceEEeecccccccchhhhhccCcccccchh
Confidence 0000000001134566666643221 333344444 46889999998766555433 3455
Q ss_pred hhhhhhhhhHHHHHHCCCeeeecCCCCCCCCC----HHHHHHHHHcc---cCCCCCCC---CCCCCCCCHHHHHHHHcHH
Q 008063 457 DRAERESYLFQSLLANNALLALGSDWPVADIN----PLCAIRTAMKR---IPPGWDNA---WIPSERISLTDALIAHTLS 526 (579)
Q Consensus 457 ~~~~~~~~~l~~l~~~Gi~v~~gsD~~~~~~~----~~~~~~~~~~~---~~~~~~~~---~~~~~~ls~~~al~~~T~n 526 (579)
.|.++....+...++.|.+..++||...-+.. .+..++.+..+ ........ +..+.+|++++++++.|.|
T Consensus 234 lR~~~Dr~aL~~al~~G~id~i~SDHaPh~~~~K~~~~~~~~~a~~G~~g~e~~lp~~~~~~v~~g~lsl~~~v~~~s~n 313 (325)
T d1gkra2 234 VRSAEMNIRLWEQLENGLIDTLGSDHGGHPVEDKEPGWKDVWKAGNGALGLETSLPMMLTNGVNKGRLSLERLVEVMCEK 313 (325)
T ss_dssp CCCHHHHHHHHHHHHHTCCCEECCCEECCCGGGTGGGGTCGGGSCCCBCCTTTHHHHHHHHTGGGTSSCHHHHHHHHTHH
T ss_pred hhhhhhhHHHHHHHhcCcceEEecCCCCCCHHHhccCCCccccCCCCcccHHHHHHHHHHHHHHcCCCCHHHHHHHHhHH
Confidence 66556667788888999999999996433210 00000000000 00000000 1134569999999999999
Q ss_pred HHHhcccCCccc
Q 008063 527 AARACFLENDVG 538 (579)
Q Consensus 527 pA~~lgl~~~~G 538 (579)
||+.+||..++|
T Consensus 314 PAki~gl~p~KG 325 (325)
T d1gkra2 314 PAKLFGIYPQKG 325 (325)
T ss_dssp HHHHHTCTTTSS
T ss_pred HHHHhCCCCCCC
Confidence 999999976676
|
| >d2r8ca1 b.92.1.9 (A:2-57,A:369-414) Uncharacterized protein EAJ56179 {Unidentified organism [TaxId: 32644]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Zn-dependent arginine carboxypeptidase-like domain: Uncharacterized protein EAJ56179 species: Unidentified organism [TaxId: 32644]
Probab=99.32 E-value=4.8e-13 Score=107.94 Aligned_cols=62 Identities=19% Similarity=0.374 Sum_probs=52.0
Q ss_pred cEEEEcCeEEeCCCCCC-eeeEEEEECCEEEEecChHHHHhhccCCCeEEeCCCCeeeccccccccc
Q 008063 46 DLVVTNGVIFTGDDSLL-FADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVH 111 (579)
Q Consensus 46 ~~likn~~v~~~~~~~~-~~~~v~I~~GkI~~Ig~~~~~~~~~~~~~~viD~~g~~V~PG~ID~H~H 111 (579)
+++|+|++|+|+.+... +..+|+|++|||++|++.... ++++++||++|++|+|||||.|.|
T Consensus 2 ~~l~~n~~v~d~~~~~~~~~~~I~I~~g~I~~i~~~~~~----~~~~~vID~~G~~v~PGlid~h~~ 64 (102)
T d2r8ca1 2 TFLFRNGALLDPDHPDLLQGFEILIEDGFIREVSDKPIK----SSNAHVIDVKGKTIMPRIVPGAHA 64 (102)
T ss_dssp EEEEEEEEECCTTSSSCEEEEEEEEESSBEEEEESSCCC----CSSCEEEECTTCEEEESCCTTSBC
T ss_pred eEEEECeEEECCCCCCcccCcEEEEECCEEEEccccCCC----CCCCEEEeCCCCEEECceeeheee
Confidence 48999999999966543 567999999999999975332 367899999999999999988764
|
| >d2fvka2 c.1.9.6 (A:57-440) Dihydropyrimidine amidohydrolase Pyd2 {Yeast (Saccharomyces kluyveri) [TaxId: 4934]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase), catalytic domain domain: Dihydropyrimidine amidohydrolase Pyd2 species: Yeast (Saccharomyces kluyveri) [TaxId: 4934]
Probab=99.32 E-value=1.1e-11 Score=124.70 Aligned_cols=166 Identities=13% Similarity=0.076 Sum_probs=103.7
Q ss_pred CCHHHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHH------------------------HHHHHhcCCCCCCceEeec
Q 008063 363 MELESLLSMTMASDKSGLQVAIHAIGDRANDLVLDMY------------------------KSVVVTTGKRDQRFRIEHA 418 (579)
Q Consensus 363 ~~~~~l~~~~~~a~~~g~~i~iH~~g~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~i~H~ 418 (579)
.+.+.+.+.++.+++.|..+.+||....-++...+.+ .......-..+.++++.|.
T Consensus 121 ~~~~~l~~~l~~~~~~g~~v~~H~Ed~~~~~~~~~~~~~~g~~~~~~~~~~rP~~aE~~av~r~~~la~~~g~~lhi~Hi 200 (384)
T d2fvka2 121 ISDYDIMSAMYATRKNGFTTMLHAENGDMVKWMIEALEEQGLTDAYYHGVSRPSIVEGEATNRAITLATTMDTPILFVHV 200 (384)
T ss_dssp CCHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHHHHHHHTTCCSTTHHHHTSCHHHHHHHHHHHHHHHHHTTCCEEECSC
T ss_pred cCHHHHHHHHHHHHhcCCceeeccccHHHHHHHHHHHhhcCCCChhhcccccccchhhHHHHHHHHHHHhcCceEEeccc
Confidence 5778899999999999999999996332222111111 1111101112558888887
Q ss_pred cCCCh-hhHHHHhhC--CcEEEecccccccchhH------------------------------------HHHhhChhhh
Q 008063 419 QHLAS-GTAARFGDQ--GIVASMQPQHLLDDADS------------------------------------ARKKLGVDRA 459 (579)
Q Consensus 419 ~~~~~-~~~~~~~~~--~i~~~~~p~~~~~~~~~------------------------------------~~~~l~~~~~ 459 (579)
..... +.++.+++. .|++.+||++...+.+. ..+..+|.|.
T Consensus 201 St~~~ve~I~~ak~~G~~Vt~Et~ph~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~~~k~~PPLR~ 280 (384)
T d2fvka2 201 SSPQAAEVIKQAQTKGLKVYAETCPQYALLSDAITRCHHHGEVESYGVGIDLSSISESPFTNPDDRFIGSKYICSPPIRP 280 (384)
T ss_dssp CCHHHHHHHHHHHHHTCCEEEEECHHHHHCCGGGGSCC--------CCSCCGGGSSSSTTTCTTCTTGGGGGCCSSCCCC
T ss_pred ccchhhHHHHHhhhcCCCEEEEeChHHhhccchhhcccccccccccccccccccccccccccccccccCceeEEcCCCCC
Confidence 54322 334444444 57889999987644331 1223466665
Q ss_pred hhhhhhHHHHHHCCCeeeecCCCCCCCC----------------------------------CHHHHHHHHHcccCCCCC
Q 008063 460 ERESYLFQSLLANNALLALGSDWPVADI----------------------------------NPLCAIRTAMKRIPPGWD 505 (579)
Q Consensus 460 ~~~~~~l~~l~~~Gi~v~~gsD~~~~~~----------------------------------~~~~~~~~~~~~~~~~~~ 505 (579)
.+....+...++.|.+..++||...... ..+..|....
T Consensus 281 ~~dr~aL~~~l~dG~Id~IaSDHaP~~~~eK~~~~~~~~~~~~~~~~~~df~~ap~G~~gle~~lpll~~~~-------- 352 (384)
T d2fvka2 281 EGTQKSIWKGMNNGTFTIVGSDHCSYNYYEKTSTASKHRAFDPENNKNGEFRYIPNGLPGVCTRMPLLYDYG-------- 352 (384)
T ss_dssp TTSHHHHHHHHHHTSCSEECCCBCCCBSSCCSSTTBGGGGEEGGGTEESCGGGSCCCBCCTTTHHHHHHHHT--------
T ss_pred HHHHHHHHHHhhCCceeEEecCCCCCCHHHhcccccccccccccccccCccccCCCCCccHHHHHHHHHHHH--------
Confidence 5666778888899999999999753211 0111222110
Q ss_pred CCCCCCCC-CCHHHHHHHHcHHHHHhcccCCcccc
Q 008063 506 NAWIPSER-ISLTDALIAHTLSAARACFLENDVGS 539 (579)
Q Consensus 506 ~~~~~~~~-ls~~~al~~~T~npA~~lgl~~~~G~ 539 (579)
..+.+ +++++++++.+.|||+.+|+.+++|+
T Consensus 353 ---v~~~~~~sl~~lv~~~s~nPAki~Gl~p~KGs 384 (384)
T d2fvka2 353 ---YLRGNLTSMMKLVEIQCTNPAKVYGMYPQKGS 384 (384)
T ss_dssp ---TTTTSSSCHHHHHHHHTHHHHHHTTCTTTSSS
T ss_pred ---HhcCCCCCHHHHHHHHhHHHHHHhCCCCCCCC
Confidence 12233 58999999999999999999777885
|
| >d1nfga1 b.92.1.3 (A:1-51,A:382-457) D-hydantoinase {Burkholderia pickettii [TaxId: 329]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase) domain: D-hydantoinase species: Burkholderia pickettii [TaxId: 329]
Probab=99.32 E-value=8e-13 Score=110.38 Aligned_cols=62 Identities=24% Similarity=0.469 Sum_probs=54.6
Q ss_pred ccEEEEcCeEEeCCCCCCeeeEEEEECCEEEEecChHHHHhhccCCCeEEeCCCCeeecccccccccccc
Q 008063 45 ADLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHFIP 114 (579)
Q Consensus 45 ~~~likn~~v~~~~~~~~~~~~v~I~~GkI~~Ig~~~~~~~~~~~~~~viD~~g~~V~PG~ID~H~H~~~ 114 (579)
|+++|||++|+++++. ..++|.|+||||++|++..+ ++.++||++|++|+||+||.|+|+..
T Consensus 1 mDllikn~~v~~~~~~--~~~di~I~dg~I~~ig~~~~------~~~~~iDa~G~~v~Pg~i~~~~~~~i 62 (127)
T d1nfga1 1 MDIIIKNGTIVTADGI--SRADLGIKDGKITQIGGALG------PAERTIDAAGRYVFPIAVGSDADIVL 62 (127)
T ss_dssp CCEEEEEEEEEETTEE--EEEEEEEETTEEEEESSCCC------CCSEEEECTTCEEEECSTTSBCCEEE
T ss_pred CcEEEECCEEECCCCC--EEEEEEEECCEEEEeeCCCC------CceEEEEeeceEEeeeccccccccee
Confidence 6899999999998653 67899999999999998642 56799999999999999999999854
|
| >d2bb0a1 b.92.1.10 (A:3-73,A:374-415) Imidazolonepropionase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Imidazolonepropionase-like domain: Imidazolonepropionase species: Bacillus subtilis [TaxId: 1423]
Probab=99.30 E-value=8.2e-16 Score=126.98 Aligned_cols=101 Identities=16% Similarity=0.089 Sum_probs=75.3
Q ss_pred HCCCeeeecCCCCCCC--CCHHHHHHHHHcccCCCCCCCCCCCCCCCHHHHHHHHcHHHHHhcccCCccccccCCCcccE
Q 008063 471 ANNALLALGSDWPVAD--INPLCAIRTAMKRIPPGWDNAWIPSERISLTDALIAHTLSAARACFLENDVGSLSPGKIADF 548 (579)
Q Consensus 471 ~~Gi~v~~gsD~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~npA~~lgl~~~~G~I~~G~~ADl 548 (579)
+.|..+.++||++... .+.+..+..+... ......++..++++++|.+||+.+++++++|+|++||.|||
T Consensus 9 n~G~~ltl~sdgp~~g~~m~~l~~i~~a~~~--------~~~~~il~~~~al~~aT~~~A~~l~~~~~~g~l~~g~~ad~ 80 (113)
T d2bb0a1 9 NIGQLLTMESSGPRAGKSMQDLHVIEDAVVG--------IHEQKIVFAGQKGAEAGYEADEIIDCSGRLVTLKAGRSADL 80 (113)
T ss_dssp EEEEECCCCCSSCCCGGGGTCCCCEEEEEEE--------EETTEEEEEEETTTTTTCEEEEEEECTTCEEECSTTSBCCE
T ss_pred hcCCeEecCCCCccccchhhhHHHhhhhhhh--------hccccccCHHHHHHHHHHHHHHHhCCcCcEEEEcCCCcccE
Confidence 4577888999987653 2222222222111 11233488889999999999999999999999999999999
Q ss_pred EEeCCCCCCC-hhhccCCeEEEEEECCEEeCC
Q 008063 549 VILSTSSWED-FAAEVSASIEATYVSGVQAYP 579 (579)
Q Consensus 549 vvld~~~~~~-~~~~~~~~v~~v~v~G~~v~~ 579 (579)
+|||.+++.. +-.+....|..||++|++||.
T Consensus 81 ~~~~~~~~~~~~y~~~~~~v~~vi~~G~iv~~ 112 (113)
T d2bb0a1 81 VIWQAPNYMYIPYHYGVNHVHQVMKNGTIVVN 112 (113)
T ss_dssp EEESSSSTTHHHHSCSSCCEEEEEETTEEEEE
T ss_pred EEecCCchhhchhhcCCCChhEEEECCEEEEe
Confidence 9999999873 334445689999999999984
|
| >d1ynya1 b.92.1.3 (A:2-52,A:385-460) D-hydantoinase {Bacillus sp. AR9 [TaxId: 301298]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase) domain: D-hydantoinase species: Bacillus sp. AR9 [TaxId: 301298]
Probab=99.28 E-value=2.5e-12 Score=107.67 Aligned_cols=63 Identities=21% Similarity=0.408 Sum_probs=52.6
Q ss_pred cEEEEcCeEEeCCCCCCeeeEEEEECCEEEEecChHHHHhhccCCCeEEeCCCCeeeccccccccccccc
Q 008063 46 DLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHFIPG 115 (579)
Q Consensus 46 ~~likn~~v~~~~~~~~~~~~v~I~~GkI~~Ig~~~~~~~~~~~~~~viD~~g~~V~PG~ID~H~H~~~~ 115 (579)
+++|||++|+++++. ..++|+|+||||++|++..+. +++++||++|++|+||+||.|+|+...
T Consensus 1 k~likn~~i~~~~~~--~~~di~I~~g~I~~ig~~~~~-----~~~~viDa~g~~v~Pg~i~~~~~~~i~ 63 (127)
T d1ynya1 1 KKWIRGGTVVTAADT--YQADVLIEGERVVAIGHQLSV-----NGAEEIDATGCYVIPIAVGSDADIVIF 63 (127)
T ss_dssp CEEEESCEEECSSCE--EECEEEEETTEEEEEECC---------CCEEEECTTSEEEECSTTSBCCEEEE
T ss_pred CEEEECcEEECCCCC--EEEeEEEECCEEEEecCCCCC-----CCCEEEEhhhceeecccccccchhhhh
Confidence 479999999987653 678999999999999987552 457999999999999999999998653
|
| >d1e9yb2 c.1.9.2 (B:132-431,B:481-569) alpha-subunit of urease, catalytic domain {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: alpha-subunit of urease, catalytic domain domain: alpha-subunit of urease, catalytic domain species: Helicobacter pylori [TaxId: 210]
Probab=99.26 E-value=3.6e-11 Score=113.08 Aligned_cols=252 Identities=17% Similarity=0.103 Sum_probs=147.9
Q ss_pred HHHHHHhcCccEEEeCCcCCCCCccccc-hHHHHHHHHHHhhcCCCeeEEEEccCccc-hh-hHHHHHHhcCCCCCCceE
Q 008063 252 ASNLALSRGVTTVVDFGRYYPGESVQLS-WEDFADVYQWASYSEKMKIRVCLFFPLET-WS-SLADLINKTGHVLSDWVY 328 (579)
Q Consensus 252 ~~~~~~~~Git~v~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~v~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~ 328 (579)
.+..++.+|+||+...|.+...+.-.++ .+.-..+.+.++....+++++.++.-... .+ ...+.+.. +
T Consensus 13 q~~~al~sGiTT~iGgGtGPa~Gt~att~tpg~~~i~~ml~a~d~~P~N~g~~gkGn~s~~~~l~eqi~a-G-------- 83 (389)
T d1e9yb2 13 QIPTAFASGVTTMIGGGTGPADGTNATTITPGRRNLKWMLRAAEEYSMNLGFLAKGNASNDASLADQIEA-G-------- 83 (389)
T ss_dssp HHHHHHHTTEEEEEEECCSSCHHHHHCCCCCHHHHHHHHHHHHTTSSSEEEEEEECCCSCHHHHHHHHHT-T--------
T ss_pred HHHHHHhcCCeEEecCccCCCCCCCccccCCChhHHHHHHHhhhcCCcceeeeeccCCCChHHHHHHHHh-c--------
Confidence 4567999999999987654322111111 23344566667777889999988765432 22 33333332 1
Q ss_pred EceEEEEEcCccCCCcccccCCCCCCCCCCcccCCCHHHHHHHHHHHHHCCCeEEEEecch---HHHHHHHHHHHHHHHh
Q 008063 329 LGGVKAFADGSLGSNSALFHEPYADEPHNYGLQVMELESLLSMTMASDKSGLQVAIHAIGD---RANDLVLDMYKSVVVT 405 (579)
Q Consensus 329 ~~g~k~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~i~iH~~g~---~~~~~~~~~~~~~~~~ 405 (579)
+....+++.|. .++..+...++.|.++++++.+|...- +-++..+++++
T Consensus 84 -------------a~GlKiHEDwG----------atp~~Id~~L~vad~~dvqv~iHtDtlNE~Gfve~T~~a~~----- 135 (389)
T d1e9yb2 84 -------------AIGFKIHEDWG----------TTPSAINHALDVADKYDVQVAIHTDTLNEAGCVEDTMAAIA----- 135 (389)
T ss_dssp -------------CSEEEECGGGC----------CCHHHHHHHHHHHHHTTCEEEECCCTTCSSCCHHHHHHHHT-----
T ss_pred -------------cceeecccccc----------CCHHHHHHHHHHHHhhCceEEecCCCcccccchhhHHHHhC-----
Confidence 22334455555 789999999999999999999998633 34455555542
Q ss_pred cCCCCCCceEeeccCC----ChhhHHHHhhCCcEEEecccccccchhHHHH---hh------Ch------------hhhh
Q 008063 406 TGKRDQRFRIEHAQHL----ASGTAARFGDQGIVASMQPQHLLDDADSARK---KL------GV------------DRAE 460 (579)
Q Consensus 406 ~~~~~~~~~i~H~~~~----~~~~~~~~~~~~i~~~~~p~~~~~~~~~~~~---~l------~~------------~~~~ 460 (579)
| -..+..|..-. .++.++.....++-.+.+.....+......+ ++ .+ -|.
T Consensus 136 -g---RtiH~~HtEGaGGGHAPDii~~~~~~nvLpsSTnPT~Pyt~nt~~EhldMlmvcHhL~~~ipeDvafAesRiR~- 210 (389)
T d1e9yb2 136 -G---RTMHTFHTEGAGGGHAPDIIKVAGEHNILPASTNPTIPFTVNTEAEHMDMLMVCHHKDKSIKEDVQFADSRIRP- 210 (389)
T ss_dssp -T---CCEEETTTTSTTSCSTTTGGGGGGSTTEEEEECGGGCSCBTTHHHHHHHHHHHTTTCCSSCHHHHHHHHHHCCH-
T ss_pred -C---CcceeeecCCCCCCCccHHHHHccCCCccCCCCCCCCCcccccHHHhhchhhhhccCCCCCchhHHHHhhcccc-
Confidence 1 12233332211 2455555555566555443333332222211 11 11 122
Q ss_pred hhhhhHHHHHHCCCeeeecCCCCCCC------CCHHHHHHHHHc-ccCCCCCCCCCCCCCCCHHHHHHHHcHHHHHhccc
Q 008063 461 RESYLFQSLLANNALLALGSDWPVAD------INPLCAIRTAMK-RIPPGWDNAWIPSERISLTDALIAHTLSAARACFL 533 (579)
Q Consensus 461 ~~~~~l~~l~~~Gi~v~~gsD~~~~~------~~~~~~~~~~~~-~~~~~~~~~~~~~~~ls~~~al~~~T~npA~~lgl 533 (579)
+....-..|+|.|..-.++||+.... ...|+....|-. |....+.....++.+ ...=+..+|+|||-..|+
T Consensus 211 eTIaAEdvLhD~GaiSi~sSDsqaMGRvgEvi~RtwQtA~kmk~~rG~l~~d~~~~DN~R--vkRYiAKYTINPAIahGi 288 (389)
T d1e9yb2 211 QTIAAEDTLHDMGAFSITSSDSQAMGRVGEVITRTWQTADKNKKEFGRLKEEKGDNDNFR--IKRYLSKYTINPAIAHGI 288 (389)
T ss_dssp HHHHHHHHHHHTTSCCEECCCTTSSCCTTSHHHHHHHHHHHHHHHHCSCSSCCSSSCHHH--HHHHHGGGTHHHHHHTTC
T ss_pred hhhhhHHHhhccCceeeecccccccchhHHHHHHHHHHHHHHHHHhhcCCccCCCcchHH--HHhhhhhcccChHHhcCc
Confidence 45556677899999999999987664 345665554432 222111111112212 223366889999999999
Q ss_pred CCccccccCCCccc
Q 008063 534 ENDVGSLSPGKIAD 547 (579)
Q Consensus 534 ~~~~G~I~~G~~AD 547 (579)
++.+||||+||.|+
T Consensus 289 s~~VGSvE~GK~a~ 302 (389)
T d1e9yb2 289 SEYVGSVEVGKVHH 302 (389)
T ss_dssp TTTSSSSCTTSBGS
T ss_pred hhccCccccccccc
Confidence 99999999999874
|
| >d1ejxc1 b.92.1.1 (C:1002-1129,C:1423-1475) alpha-Subunit of urease {Klebsiella aerogenes [TaxId: 28451]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: alpha-Subunit of urease domain: alpha-Subunit of urease species: Klebsiella aerogenes [TaxId: 28451]
Probab=99.23 E-value=3.9e-12 Score=109.22 Aligned_cols=73 Identities=25% Similarity=0.267 Sum_probs=60.3
Q ss_pred CCCccEEEEcCeEEeCCCCCCeeeEEEEECCEEEEecChHHHHh------hccCCCeEEeCCCCeeeccccccccccccc
Q 008063 42 NLEADLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQ------LAADGTNVLNLQGKVVVPGFIDSHVHFIPG 115 (579)
Q Consensus 42 ~~~~~~likn~~v~~~~~~~~~~~~v~I~~GkI~~Ig~~~~~~~------~~~~~~~viD~~g~~V~PG~ID~H~H~~~~ 115 (579)
....+++|+|++|++..+. ...+|.|+||||++|++...+.. ......++||++|++|+||+||+|+|+.++
T Consensus 62 ~~~lDlvI~n~~Ivd~~Gi--~kaDIgIkdGrI~~IGkagnpd~~d~v~l~~g~~tevIdaeG~ivtpG~ID~HvHf~~p 139 (181)
T d1ejxc1 62 ADCVDLVLTNALIVDHWGI--VKADIGVKDGRIFAIGKAGNPDIQPNVTIPIGAATEVIAAEGKIVTAGSIEVGKLADLV 139 (181)
T ss_dssp GGSCSEEEEEEEEEETTEE--EEEEEEEETTEEEEEECEECTTTCSSCCEECCTTCEEEECTTCEEEECSSCTTSBCCEE
T ss_pred cccccEEEEccEEcCCCCc--EEEEEEEeCCEEEEEecCCCccccCCceeeeccceEEecCCCcEEeeeeeecceEEeee
Confidence 4578999999999998764 78899999999999997543211 113578999999999999999999999887
Q ss_pred C
Q 008063 116 G 116 (579)
Q Consensus 116 ~ 116 (579)
.
T Consensus 140 ~ 140 (181)
T d1ejxc1 140 V 140 (181)
T ss_dssp E
T ss_pred e
Confidence 3
|
| >d1k1da1 b.92.1.3 (A:1-52,A:385-460) D-hydantoinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase) domain: D-hydantoinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=99.23 E-value=2.7e-12 Score=107.59 Aligned_cols=63 Identities=25% Similarity=0.515 Sum_probs=53.8
Q ss_pred ccEEEEcCeEEeCCCCCCeeeEEEEECCEEEEecChHHHHhhccCCCeEEeCCCCeeecccccccccccc
Q 008063 45 ADLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHFIP 114 (579)
Q Consensus 45 ~~~likn~~v~~~~~~~~~~~~v~I~~GkI~~Ig~~~~~~~~~~~~~~viD~~g~~V~PG~ID~H~H~~~ 114 (579)
|+++|||++|+++++. ..++|+|+||||++|++..+ .+++++||++|++|+||+||.|.|+..
T Consensus 1 M~~likn~~v~~~~~~--~~~Di~I~~g~I~~Ig~~~~-----~~~~~vida~g~~v~P~~v~~~~~~~~ 63 (128)
T d1k1da1 1 MTKIIKNGTIVTATDT--YEAHLLIKDGKIAMIGQNLE-----EKGAEVIDAKGCYVFPIVVGSDADLVI 63 (128)
T ss_dssp CCEEEEEEEEECSSCE--EEEEEEECSSBEEEEESSCC-----CSSCCCEECTTCEEEECSTTSBCCEEE
T ss_pred CCEEEECcEEECCCCC--EEeeEEEECCEEEEEcCCCC-----CCceEEeeeCCCeEeeeecccccceEE
Confidence 6799999999998764 57899999999999998654 256789999999999999987777643
|
| >d2qs8a1 b.92.1.9 (A:7-63,A:374-412) Xaa-Pro dipeptidase {Alteromonas macleodii [TaxId: 28108]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Zn-dependent arginine carboxypeptidase-like domain: Xaa-Pro dipeptidase species: Alteromonas macleodii [TaxId: 28108]
Probab=99.22 E-value=1.8e-12 Score=102.70 Aligned_cols=64 Identities=14% Similarity=0.209 Sum_probs=53.7
Q ss_pred cEEEEcCeEEeCCCC-CCeeeEEEEECCEEEEecChHHHHhhccCCCeEEeCCCCeeecccccccccc
Q 008063 46 DLVVTNGVIFTGDDS-LLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHF 112 (579)
Q Consensus 46 ~~likn~~v~~~~~~-~~~~~~v~I~~GkI~~Ig~~~~~~~~~~~~~~viD~~g~~V~PG~ID~H~H~ 112 (579)
+++|+|++|+|+.+. ...+.+|+|++|||++|++....+ +++.++||++|++|+|||+|.|+|.
T Consensus 2 ktlI~~g~liDg~~~~~~~~~~I~I~~~~I~~V~~~~~~~---~~~~~vID~~G~~v~PGL~~g~~~d 66 (96)
T d2qs8a1 2 KTLIHAGKLIDGKSDQVQSRISIVIDGNIISDIKKGFISS---NDFEDYIDLRDHTVLPSIESGKLAD 66 (96)
T ss_dssp CEEEEEEEECCSSCSSCEEEEEEEEETTEEEEEEESCCCC---TTSSEEEEEEEEEEEESCCTTSBCC
T ss_pred eEEEECeEEEECCCCccccCceEEEECCEEEEEcccccCC---CCCCEEEECCCCEeccCccccCccc
Confidence 589999999999654 446779999999999998643222 3578999999999999999999994
|
| >d2fvka1 b.92.1.3 (A:2-56,A:441-541) Dihydropyrimidine amidohydrolase Pyd2 {Yeast (Saccharomyces kluyveri) [TaxId: 4934]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase) domain: Dihydropyrimidine amidohydrolase Pyd2 species: Yeast (Saccharomyces kluyveri) [TaxId: 4934]
Probab=99.22 E-value=2.9e-12 Score=112.21 Aligned_cols=68 Identities=25% Similarity=0.484 Sum_probs=56.9
Q ss_pred CccEEEEcCeEEeCCCCCCeeeEEEEECCEEEEecChHHHHhhccCCCeEEeCCCCee---ecccccccccccccCc
Q 008063 44 EADLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVV---VPGFIDSHVHFIPGGL 117 (579)
Q Consensus 44 ~~~~likn~~v~~~~~~~~~~~~v~I~~GkI~~Ig~~~~~~~~~~~~~~viD~~g~~V---~PG~ID~H~H~~~~~~ 117 (579)
|.+++|||++|+|+++ ....+|+|+||||++|++..... .+.++||++|++| +|||||+|+|++.+..
T Consensus 2 m~dllikn~~v~~~~~--~~~~di~i~~g~I~~ig~~~~~~----~~~~viDa~G~~V~p~~pg~~d~Hih~~~~~~ 72 (156)
T d2fvka1 2 IYDLIIKNGIICTASD--IYAAEIAVNNGKVQLIAASIDPS----LGSEVIDAEGAFITPILPGVSDADLVIWYPDD 72 (156)
T ss_dssp CEEEEEESCEEECSSC--EEECEEEEETTEEEEEESCCCGG----GEEEEEECTTCEEEECCTTTSBCCEEEECCSS
T ss_pred CccEEEECCEEECCCC--CEEEEEEEECCEEEEecCCCCCC----CCCEEEECCCCEEeeecccccccceEEEeecc
Confidence 5679999999999865 36789999999999999754322 4568999999997 6999999999987643
|
| >d1xrta2 c.1.9.6 (A:56-365) Two-domain dihydroorotase {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase), catalytic domain domain: Two-domain dihydroorotase species: Aquifex aeolicus [TaxId: 63363]
Probab=99.22 E-value=3.6e-12 Score=125.43 Aligned_cols=172 Identities=15% Similarity=0.138 Sum_probs=90.8
Q ss_pred CCHHHHHHHHHHHHHCCCeEEEEecchHHHHHHHH--------------------HHHHHHHhcCCCCCCceEeeccCCC
Q 008063 363 MELESLLSMTMASDKSGLQVAIHAIGDRANDLVLD--------------------MYKSVVVTTGKRDQRFRIEHAQHLA 422 (579)
Q Consensus 363 ~~~~~l~~~~~~a~~~g~~i~iH~~g~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~i~H~~~~~ 422 (579)
.+...+.+.++.+.+.+..+.+|+....-...... ...+.....-..+.+.++.|.....
T Consensus 103 ~d~~~l~~~~~~~~~~~~~~~~h~e~~~~~~~~~~~~~~~~~~~~~~rp~~~E~~ai~r~~~la~~~~~~~~i~HiSt~~ 182 (310)
T d1xrta2 103 MDSSVMRKALELASQLGVPIMDHCEDDKLAYGVINEGEVSALLGLSSRAPEAEEIQIARDGILAQRTGGHVHIQHVSTKL 182 (310)
T ss_dssp CCHHHHHHHHHHHHHHTCEEEECCCGGGGTC--------------------CHHHHHHHHHHHHHHHCCEEEESCCCSHH
T ss_pred cCHHHHHHHHHHhhhhhhhhhhccchhhhhhhhhhhhhcccccCccccchHHHHHHHHHHHHHHhhcCCeeeccccchHH
Confidence 57888999999999999999999852210000000 0000000000124467777775433
Q ss_pred h-hhHHHHhhC--CcEEEecccccccchhHH------HHhhChhhhhhhhhhHHHHHHCCCeeeecCCCCCCCCCHHHHH
Q 008063 423 S-GTAARFGDQ--GIVASMQPQHLLDDADSA------RKKLGVDRAERESYLFQSLLANNALLALGSDWPVADINPLCAI 493 (579)
Q Consensus 423 ~-~~~~~~~~~--~i~~~~~p~~~~~~~~~~------~~~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD~~~~~~~~~~~~ 493 (579)
. +.++..++. .+++.+||++...+.+.+ ....++.|.++....+...++.|.+..++||.+.-........
T Consensus 183 ~l~~i~~a~~~g~~vt~e~~ph~L~l~~~~~~~~~~~~k~~PplR~~~d~~aL~~al~~G~id~i~SDHaPh~~~~K~~~ 262 (310)
T d1xrta2 183 SLEIIEFFKEKGVKITCEVNPNHLLFTEREVLNSGANARVNPPLRKKEDRLALIEGVKRGIIDCFATDHAPHQTFEKELV 262 (310)
T ss_dssp HHHHHHHHHHTTCCEEEEECGGGGC----------------------CCHHHHHHHHHHTCSCEECCCBCCCCC------
T ss_pred HHHHHHHHHHcCCceecchHHHHhhccccccccccchhhhcccCCCHHHHHHHHHHHhcCCCeEEecCCCCCCHHHccCc
Confidence 2 333334444 478899999976544332 2344666666667778888899999999999754321111101
Q ss_pred HHHHccc---CCCCCCC--CCCCCCCCHHHHHHHHcHHHHHhcccC
Q 008063 494 RTAMKRI---PPGWDNA--WIPSERISLTDALIAHTLSAARACFLE 534 (579)
Q Consensus 494 ~~~~~~~---~~~~~~~--~~~~~~ls~~~al~~~T~npA~~lgl~ 534 (579)
+.+..+. ....+.. +..+.++++++++++.+.|||+++|++
T Consensus 263 ~~~~~G~~g~e~~lp~l~~~v~~g~l~l~~~v~~~s~npAki~gL~ 308 (310)
T d1xrta2 263 EFAMPGIIGLQTALPSALELYRKGIISLKKLIEMFTINPARIIGVD 308 (310)
T ss_dssp -----CCCCGGGHHHHHHHHHHTTSSCHHHHHHHHTHHHHHHHTCS
T ss_pred ccCCCCceeHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhCCC
Confidence 1111100 0000000 113556999999999999999999995
|
| >d1m7ja1 b.92.1.6 (A:7-61) N-acyl-D-aminoacid amidohydrolase {Alcaligenes faecalis [TaxId: 511]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: D-aminoacylase domain: N-acyl-D-aminoacid amidohydrolase species: Alcaligenes faecalis [TaxId: 511]
Probab=99.14 E-value=3.7e-11 Score=84.37 Aligned_cols=54 Identities=26% Similarity=0.519 Sum_probs=47.8
Q ss_pred ccEEEEcCeEEeCCCCCCeeeEEEEECCEEEEecChHHHHhhccCCCeEEeCCCCeeec
Q 008063 45 ADLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVP 103 (579)
Q Consensus 45 ~~~likn~~v~~~~~~~~~~~~v~I~~GkI~~Ig~~~~~~~~~~~~~~viD~~g~~V~P 103 (579)
.+++|||++|+|+.+.....++|+|+||||++|++... .++.++||++|++|+|
T Consensus 2 ~DllIkn~~i~d~~~~~~~~~di~I~~g~I~~Ig~~~~-----~~~~~vIDa~G~~v~P 55 (55)
T d1m7ja1 2 FDYILSGGTVIDGTNAPGRLADVGVRGDRIAAVGDLSA-----SSARRRIDVAGKVVSP 55 (55)
T ss_dssp BSEEEESSEECCSSSCCCEECEEEEETTEEEEEECCTT-----SCBSCEEECTTCEEEE
T ss_pred CcEEEECCEEECCCCCceeEEEEEEECCEEEEEccCCC-----CCCCEEEECCCCEECC
Confidence 47999999999998877788899999999999997543 3668899999999998
|
| >d3be7a1 b.92.1.9 (A:3-56,A:360-400) Zn-dependent arginine carboxypeptidase {Unidentified organism [TaxId: 32644]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Zn-dependent arginine carboxypeptidase-like domain: Zn-dependent arginine carboxypeptidase species: Unidentified organism [TaxId: 32644]
Probab=99.13 E-value=6.2e-13 Score=102.90 Aligned_cols=59 Identities=10% Similarity=0.010 Sum_probs=53.7
Q ss_pred HHHHHHcHHHHHhcccCCc--cccccCCCcccEEEeCCCCCCChhhccCCeEEEEEECCEEeC
Q 008063 518 DALIAHTLSAARACFLEND--VGSLSPGKIADFVILSTSSWEDFAAEVSASIEATYVSGVQAY 578 (579)
Q Consensus 518 ~al~~~T~npA~~lgl~~~--~G~I~~G~~ADlvvld~~~~~~~~~~~~~~v~~v~v~G~~v~ 578 (579)
++|+.+|+|||++++++++ +|+|++||.|||+++++||++++..+. ++..||++|+++.
T Consensus 32 ~ai~~~t~~~A~il~l~d~illG~I~~Gk~ADlvlvdgnPL~dI~~l~--~i~~Vik~G~v~k 92 (95)
T d3be7a1 32 AEIGKINTKDATVISIPDLILIPQIKEGFDADIVGVIENPLANIRTLE--EVAFVMKEGKVYK 92 (95)
T ss_dssp EEEECCCCSSSEEEEEEEEEEEESCCTTSBCCEEEESSCTTTCGGGTT--SCCEEEETTEEEE
T ss_pred HHHHhhccChHHhcCCCCccccceeccCceeeEEEEcCCchhhhHHhc--CCCEEEECCEEEc
Confidence 4688899999999999998 599999999999999999999888876 7899999999763
|
| >d1gkra1 b.92.1.3 (A:1-54,A:380-451) L-hydantoinase {Arthrobacter aurescens [TaxId: 43663]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase) domain: L-hydantoinase species: Arthrobacter aurescens [TaxId: 43663]
Probab=99.07 E-value=3.1e-11 Score=100.57 Aligned_cols=67 Identities=16% Similarity=0.361 Sum_probs=56.0
Q ss_pred CccEEEEcCeEEeCCCCCCeeeEEEEECCEEEEecChHHHHhhccCCCeEEeCCCCeeeccc---ccccccccccC
Q 008063 44 EADLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGF---IDSHVHFIPGG 116 (579)
Q Consensus 44 ~~~~likn~~v~~~~~~~~~~~~v~I~~GkI~~Ig~~~~~~~~~~~~~~viD~~g~~V~PG~---ID~H~H~~~~~ 116 (579)
|.+++|||++|+++++. ..++|+|+||||++|++..+. +++.++||++|++|+||+ .|+|.|++.+.
T Consensus 1 M~dllIkn~~iv~~~~~--~~~Di~I~dgkI~~i~~~~~~----~~a~~~iDa~g~~v~P~~~vG~DAD~~l~Dp~ 70 (126)
T d1gkra1 1 MFDVIVKNCRLVSSDGI--TEADILVKDGKVAAISADTSD----VEASRTIDAGGKFVMPTLQVGSDADLLILDLD 70 (126)
T ss_dssp CEEEEEEEEEEEETTEE--EEEEEEEETTEEEEEESCCTT----CCEEEEEECTTCEEEESCCTTSBCCEEEEESC
T ss_pred CccEEEECcEEECCCCC--EEEeEEEECCEEEEEcCcCCc----ccceEEeehhhcccccceeecccchhheeccc
Confidence 45799999999998653 567999999999999975432 245689999999999998 99999998654
|
| >d2icsa2 c.1.9.14 (A:55-321) Putative adenine deaminase EF0837 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Adenine deaminase-like domain: Putative adenine deaminase EF0837 species: Enterococcus faecalis [TaxId: 1351]
Probab=99.02 E-value=1.5e-09 Score=101.29 Aligned_cols=145 Identities=8% Similarity=-0.037 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHH---hcCCCCCCceEeeccCCChhhHHHHhhCCcEEEeccc
Q 008063 365 LESLLSMTMASDKSGLQVAIHAIGDRANDLVLDMYKSVVV---TTGKRDQRFRIEHAQHLASGTAARFGDQGIVASMQPQ 441 (579)
Q Consensus 365 ~~~l~~~~~~a~~~g~~i~iH~~g~~~~~~~~~~~~~~~~---~~~~~~~~~~i~H~~~~~~~~~~~~~~~~i~~~~~p~ 441 (579)
.+........+...++++..|+.................. ............+......+........+......+.
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 193 (267)
T d2icsa2 114 TPLELAKQIQQENQEIPLMVHIGSAPPHLDEILALMEKGDVLTHCFNGKENGILDQATDKIKDFAWQAYNKGVVFDIGHG 193 (267)
T ss_dssp HHHHHHHHHHHTTTTCCEEEEECSSSSCHHHHHHHCCTTCEEESTTCCSTTSSEETTTTEECHHHHHHHHTTCEEECCCT
T ss_pred HHHHHHHHHHHHhcccceeeecccchhHHHHHHhhhhccchhHHHhhhhccccccccccchHHHHHHHHhcCCeeeccCc
Confidence 3444455556677889999998754322222221111000 0000011112222222234455556666776665554
Q ss_pred ccccchhHHHHhhChhhhhhhhhhHHHHHHCCCeeeecCCCCCC------CCCHHHHHHHHHcccCCCCCCCCCCCCCCC
Q 008063 442 HLLDDADSARKKLGVDRAERESYLFQSLLANNALLALGSDWPVA------DINPLCAIRTAMKRIPPGWDNAWIPSERIS 515 (579)
Q Consensus 442 ~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls 515 (579)
...... ......+...++....++|.... ..++..+++.++. .|+|
T Consensus 194 ~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-------------~Gls 245 (267)
T d2icsa2 194 TDSFNF---------------HVAETALREGMKAASISTDIYIRNRENGPVYDLATTMEKLRV-------------VGYD 245 (267)
T ss_dssp TTSCCH---------------HHHHHHHHTTCCCSBCCCCBCHHHHHSSSCCCHHHHHHHHHH-------------HTCC
T ss_pred chhhhH---------------HHHHHhhhhcccceeccceeecCCCCcchHHHHHHHHHHHHH-------------cCCC
Confidence 332111 11223444556666777775421 2466677776654 3599
Q ss_pred HHHHHHHHcHHHHHhcccCCccc
Q 008063 516 LTDALIAHTLSAARACFLENDVG 538 (579)
Q Consensus 516 ~~~al~~~T~npA~~lgl~~~~G 538 (579)
+.|||+++|.|||++||+++ +|
T Consensus 246 ~~eal~~aT~npA~~lgl~d-rG 267 (267)
T d2icsa2 246 WPEIIEKVTKAPAENFHLTQ-KG 267 (267)
T ss_dssp HHHHHHTTTHHHHHHTTCTT-SS
T ss_pred HHHHHHHHHHHHHHHhCCCC-CC
Confidence 99999999999999999987 55
|
| >d1gkpa1 b.92.1.3 (A:2-54,A:390-459) D-hydantoinase {Thermus sp. [TaxId: 275]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase) domain: D-hydantoinase species: Thermus sp. [TaxId: 275]
Probab=99.00 E-value=4.8e-11 Score=98.71 Aligned_cols=62 Identities=26% Similarity=0.374 Sum_probs=51.3
Q ss_pred cEEEEcCeEEeCCCCCCeeeEEEEECCEEEEecChHHHHhhccCCCeEEeCCCCeeeccccccccccc
Q 008063 46 DLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHFI 113 (579)
Q Consensus 46 ~~likn~~v~~~~~~~~~~~~v~I~~GkI~~Ig~~~~~~~~~~~~~~viD~~g~~V~PG~ID~H~H~~ 113 (579)
.++|||++|+++++. ..++|+|+||||.+|++..+. +.+.++||++|++|+||..++|.|..
T Consensus 1 pllIkng~iv~~~~~--~~~Di~I~~gkI~~Ig~~l~~----~~~~~viDa~G~~v~~g~d~~~~d~~ 62 (123)
T d1gkpa1 1 PLLIKNGEIITADSR--YKADIYAEGETITRIGQNLEA----PPGTEVIDATGKYVFPGADLVVYDPQ 62 (123)
T ss_dssp CEEEESCEEEETTEE--EECEEEESSSBCCEEESCCCC----CTTCEEEECTTSEEEECCCEEEEETT
T ss_pred CEEEECcEEECCCCC--EEeeEEEECCEEEEeecCCCC----CcchhhhhhccceEecCcceEEEecc
Confidence 379999999998654 678999999999999986432 35679999999999999976666653
|
| >d1i0da_ c.1.9.3 (A:) Phosphotriesterase (parathion hydrolase, PTE) {Pseudomonas diminuta [TaxId: 293]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Phosphotriesterase-like domain: Phosphotriesterase (parathion hydrolase, PTE) species: Pseudomonas diminuta [TaxId: 293]
Probab=98.92 E-value=2.5e-08 Score=97.62 Aligned_cols=167 Identities=13% Similarity=0.080 Sum_probs=95.6
Q ss_pred HHHHHHHHHHHHHCCCeEEEEecch-HHHHHHHHHHHHHHHhcCCCCCCceEeeccC-CChhhHHHHhhCCcEE--Eecc
Q 008063 365 LESLLSMTMASDKSGLQVAIHAIGD-RANDLVLDMYKSVVVTTGKRDQRFRIEHAQH-LASGTAARFGDQGIVA--SMQP 440 (579)
Q Consensus 365 ~~~l~~~~~~a~~~g~~i~iH~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~i~H~~~-~~~~~~~~~~~~~i~~--~~~p 440 (579)
.+.+++.++.+++.|.++.+|+... .+.....+.+. ..+....+..+.|+.. ...+.+.++++.+..+ ..+|
T Consensus 147 ~~~~~~~~~~a~~~g~pv~~h~~~~~~~~~~~~~~~~----~~~~~~~~~~i~H~~~~~~~~~~~~~~~~g~~v~~~~~~ 222 (331)
T d1i0da_ 147 ELVLKAAARASLATGVPVTTHTAASQRDGEQQAAIFE----SEGLSPSRVCIGHSDDTDDLSYLTALAARGYLIGLDHIP 222 (331)
T ss_dssp HHHHHHHHHHHHHHCCCEEEECCGGGTHHHHHHHHHH----HTTCCGGGEEECSGGGCCCHHHHHHHHHTTCEEEECCTT
T ss_pred HHHHHHHHHHHHHhCCeEEeeccchhhhhhhhhhhhh----hcccCCcceEEEecCCcchHHHHHHHHhcCCceeeccee
Confidence 4567888899999999999998633 23333333332 2344555778889874 4456777888877654 5566
Q ss_pred cccccchhHHH---HhhChhhhhhhhhhHHHHHHCCC--eeeecCCCCCCCCCH-----HHHHHHHHcccCCCCC--CCC
Q 008063 441 QHLLDDADSAR---KKLGVDRAERESYLFQSLLANNA--LLALGSDWPVADINP-----LCAIRTAMKRIPPGWD--NAW 508 (579)
Q Consensus 441 ~~~~~~~~~~~---~~l~~~~~~~~~~~l~~l~~~Gi--~v~~gsD~~~~~~~~-----~~~~~~~~~~~~~~~~--~~~ 508 (579)
.+.....+... ......-. .....++.++++|. .+.++||++...+.. ......+..+...-.. ..+
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~-~r~~~~~~~l~~g~~d~i~~~tD~p~~~p~~~~~~~~~~~~~g~~g~~~~l~~~~~~ 301 (331)
T d1i0da_ 223 HSAIGLEDNASASALLGIRSWQ-TRALLIKALIDQGYMKQILVSNDWLFGFSSYVTNIMDVMDRVNPDGMAFIPLRVIPF 301 (331)
T ss_dssp CCCTTCTTCHHHHHHHCSSCHH-HHHHHHHHHHHTTCGGGEEECCCCCSEECSSSTTHHHHHHHHCTTGGGHHHHTHHHH
T ss_pred eeccchhhhccccCCccCCChh-hhHHHHHHHHHhcCCCCEEECCCCCCcccccccCCCccccccCCCcHHHHHHHHHHH
Confidence 65432221111 11111001 22334677888887 578999987542111 0000000000000000 000
Q ss_pred CCCCCCCHHHHHHHHcHHHHHhcccCCc
Q 008063 509 IPSERISLTDALIAHTLSAARACFLEND 536 (579)
Q Consensus 509 ~~~~~ls~~~al~~~T~npA~~lgl~~~ 536 (579)
..+.|+|++++.++.|.||||+||++.+
T Consensus 302 ~~~~gis~e~i~~i~~~NParlf~l~~k 329 (331)
T d1i0da_ 302 LREKGVPQETLAGITVTNPARFLSPTLR 329 (331)
T ss_dssp HHHTTCCHHHHHHHHTHHHHHHHSCCCC
T ss_pred HHHcCCCHHHHHHHHHHHHHHHcCCCCC
Confidence 1345799999999999999999999874
|
| >d1yrra2 c.1.9.10 (A:54-350) N-acetylglucosamine-6-phosphate deacetylase, NagA, catalytic domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: N-acetylglucosamine-6-phosphate deacetylase, NagA, catalytic domain domain: N-acetylglucosamine-6-phosphate deacetylase, NagA, catalytic domain species: Escherichia coli [TaxId: 562]
Probab=98.88 E-value=7.2e-10 Score=105.73 Aligned_cols=63 Identities=21% Similarity=0.224 Sum_probs=51.6
Q ss_pred hhHHHHHHCCCeeeecCCCCCC-CCCHHHHHHHHHcccCCCCCCCCCCCCCCCHHHHHHHHcHHHHHhcccCCccc
Q 008063 464 YLFQSLLANNALLALGSDWPVA-DINPLCAIRTAMKRIPPGWDNAWIPSERISLTDALIAHTLSAARACFLENDVG 538 (579)
Q Consensus 464 ~~l~~l~~~Gi~v~~gsD~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~npA~~lgl~~~~G 538 (579)
.+...+.++|+.+.++||...+ ..+++.+++.++.. .|||++|||+++|.||||+||+++++|
T Consensus 234 ~~~~~~~~~g~~~~~gtd~~~g~~~~l~~~~~~~v~~------------~gls~~~al~~aT~n~A~~LGldd~iG 297 (297)
T d1yrra2 234 FAGKTIYYRNGLCVDENGTLSGSSLTMIEGVRNLVEH------------CGIALDEVLRMATLYPARAIGVEKRLG 297 (297)
T ss_dssp ETTEEEEECSSCEECTTCCEEEBCCCHHHHHHHHHHH------------HCCCHHHHHHHHTHHHHHHTTCTTTSS
T ss_pred CCcceEEEeCCEEEecCCCCccchhhHHHHHHHHHHH------------hCCCHHHHHHHHHHHHHHHhCCCcCcC
Confidence 3456677889999999997643 46788888877642 359999999999999999999999887
|
| >d1kcxa1 b.92.1.3 (A:15-66,A:401-490) Dihydropyrimidinase related protein-1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase) domain: Dihydropyrimidinase related protein-1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.87 E-value=8.1e-10 Score=93.31 Aligned_cols=65 Identities=23% Similarity=0.428 Sum_probs=55.1
Q ss_pred cEEEEcCeEEeCCCCCCeeeEEEEECCEEEEecChHHHHhhccCCCeEEeCCCCeeeccc-ccccccccccC
Q 008063 46 DLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGF-IDSHVHFIPGG 116 (579)
Q Consensus 46 ~~likn~~v~~~~~~~~~~~~v~I~~GkI~~Ig~~~~~~~~~~~~~~viD~~g~~V~PG~-ID~H~H~~~~~ 116 (579)
+++|||++|+++... ..++|+|+||+|.+|++.... +.++++||+.|++|+||. .|+|.|++.+.
T Consensus 2 k~lIkng~iv~~~~~--~~~DilIedG~I~~Ig~~l~~----~~~a~vIDa~G~~v~~~~G~dAdl~i~Dp~ 67 (142)
T d1kcxa1 2 RLLIRGGRIINDDQS--FYADVYLEDGLIKQIGENLIV----PGGVKTIEANGRMVIIAVGSDADVVIWDPD 67 (142)
T ss_dssp CEEEESCEEECSSCE--EECEEEEETTEEEEEESSCCS----CSSCEEEECTTCEEECCTTSBCCEEEEEEE
T ss_pred cEEEECCEEECCCCc--EEeeEEEECCEEeEEeccCCC----CccceeechhhcceeecccccceEEEEecc
Confidence 589999999997543 567999999999999975432 256899999999999998 99999998764
|
| >d1ejxc2 c.1.9.2 (C:1130-1422,C:1476-1567) alpha-subunit of urease, catalytic domain {Klebsiella aerogenes [TaxId: 28451]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: alpha-subunit of urease, catalytic domain domain: alpha-subunit of urease, catalytic domain species: Klebsiella aerogenes [TaxId: 28451]
Probab=98.70 E-value=1.2e-07 Score=89.02 Aligned_cols=244 Identities=14% Similarity=0.062 Sum_probs=139.8
Q ss_pred HHHHHHhcCccEEEeCCcCCCCCccccc-hHHHHHHHHHHhhcCCCeeEEEEccCccc-h-hhHHHHHHhcCCCCCCceE
Q 008063 252 ASNLALSRGVTTVVDFGRYYPGESVQLS-WEDFADVYQWASYSEKMKIRVCLFFPLET-W-SSLADLINKTGHVLSDWVY 328 (579)
Q Consensus 252 ~~~~~~~~Git~v~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~v~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~ 328 (579)
.+..++.+|+||+...|.+...+...++ .+.-+.+.+.++....+++++.++.-... . ..+.+.+.. +
T Consensus 13 q~~~al~sGiTT~iGgGtGPa~Gt~att~tpg~~~~~~ml~a~d~~P~N~g~~gkGn~s~~~~l~eqi~A-G-------- 83 (385)
T d1ejxc2 13 QAEEALVSGVTTMVGGGTGPAAGTHATTCTPGPWYISRMLQAADSLPVNIGLLGKGNVSQPDALREQVAA-G-------- 83 (385)
T ss_dssp HHHHHHHTTEEEEEEECCSSSHHHHHSSCCCHHHHHHHHHHHHTTSSSEEEEEEECCCSSHHHHHHHHHH-T--------
T ss_pred HHHHHHhcCCeeeecCccCCCCCCCCcCcCCCHHHHHHHHHhhhhCCcceeeeeccccCChHHHHHHHHh-h--------
Confidence 4567999999999987654332222222 23445566667777889999988765443 2 233333332 1
Q ss_pred EceEEEEEcCccCCCcccccCCCCCCCCCCcccCCCHHHHHHHHHHHHHCCCeEEEEecch---HHHHHHHHHHHHHHHh
Q 008063 329 LGGVKAFADGSLGSNSALFHEPYADEPHNYGLQVMELESLLSMTMASDKSGLQVAIHAIGD---RANDLVLDMYKSVVVT 405 (579)
Q Consensus 329 ~~g~k~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~i~iH~~g~---~~~~~~~~~~~~~~~~ 405 (579)
+....++|.|. .++..+...++.|.++++++.+|...- +-++..+++++
T Consensus 84 -------------a~GlKiHEDwG----------atpa~id~~L~vad~~dvqv~iHtDtlNE~gfvedT~~a~~----- 135 (385)
T d1ejxc2 84 -------------VIGLKIHEDWG----------ATPAAIDCALTVADEMDIQVALHSDTLNESGFVEDTLAAIG----- 135 (385)
T ss_dssp -------------CSEEEEEGGGC----------CCHHHHHHHHHHHHHHTCEEEEECCTTCSSCCHHHHHHHHT-----
T ss_pred -------------hceecCCcccc----------cChHHHHHHHHhHhhcCceEEEecccccccccchhhHHHhC-----
Confidence 22233455555 789999999999999999999998633 33455554442
Q ss_pred cCCCCCCceEeeccC---C-ChhhHHHHhhCCcEEEecccccccchhHHHHh-------------hC--------hhhhh
Q 008063 406 TGKRDQRFRIEHAQH---L-ASGTAARFGDQGIVASMQPQHLLDDADSARKK-------------LG--------VDRAE 460 (579)
Q Consensus 406 ~~~~~~~~~i~H~~~---~-~~~~~~~~~~~~i~~~~~p~~~~~~~~~~~~~-------------l~--------~~~~~ 460 (579)
+-..+..|..- . .++.++.....++-.+.+.....+......+- ++ .-|.
T Consensus 136 ----gRtiH~~H~EGaGGGHAPDii~~~~~~nvlpsSTnPT~P~t~nt~~EhldMlmvcHhL~~~ipeDvafAesRiR~- 210 (385)
T d1ejxc2 136 ----GRTIHTFHTEGAGGGHAPDIITACAHPNILPSSTNPTLPYTLNTIDEHLDMLMVCHHLDPDIAEDVAFAESRIRR- 210 (385)
T ss_dssp ----TCCEEESSTTSTTSSSTTTGGGGGGCTTEEEEEESTTSSCBTTHHHHHHHHHHHC----------CHHHHHHSCH-
T ss_pred ----CCceeeeecccCCCCccchhhHhhccCcccCCCCCCCCCCccCchHhhCCceeecccCCCCChhHHhhhhccccc-
Confidence 21223333321 1 24555555555665544333333222222110 11 1122
Q ss_pred hhhhhHHHHHHCCCeeeecCCCCCCC------CCHHHHHHHHHc-ccCCCCCCCCCCCCCCCHHHHHHHHcHHHHHhccc
Q 008063 461 RESYLFQSLLANNALLALGSDWPVAD------INPLCAIRTAMK-RIPPGWDNAWIPSERISLTDALIAHTLSAARACFL 533 (579)
Q Consensus 461 ~~~~~l~~l~~~Gi~v~~gsD~~~~~------~~~~~~~~~~~~-~~~~~~~~~~~~~~~ls~~~al~~~T~npA~~lgl 533 (579)
+.+..-..|+|.|..-.++||+.... ...|+....|-. |..........++ .-...=+..+|+|||-..|+
T Consensus 211 eTiaAEdvLhD~GaiSi~sSDsQaMGRvGEvi~RtwqtA~kmk~~rG~l~~d~~~~DN--~RvkRYIAKYTINPAIahGI 288 (385)
T d1ejxc2 211 ETIAAEDVLHDLGAFSLTSSDSQAMGRVGEVILRTWQVAHRMKVQRGALAEETGDNDN--FRVKRYIAKYTINPALTHGI 288 (385)
T ss_dssp HHHHHHHHHHHTTSSCEEECCTTSSSCTTCHHHHHHHHHHHHHHHHCSCTTCCSSSCH--HHHHHHHHHHTHHHHHHTTC
T ss_pred hhhhhHHHhhccCceeeecccccccCcCCcchhhhHHHHHHHHHhhccCCCCCCCCcc--hHHHhhhhhhccChHHHcCc
Confidence 45556677899999999999987654 345666555533 2221111111111 22333467899999999999
Q ss_pred CCcccc
Q 008063 534 ENDVGS 539 (579)
Q Consensus 534 ~~~~G~ 539 (579)
++.+|.
T Consensus 289 sh~VGM 294 (385)
T d1ejxc2 289 AHEVGM 294 (385)
T ss_dssp TTTSSC
T ss_pred cceecc
Confidence 988773
|
| >d2ftwa1 b.92.1.3 (A:7-59,A:394-490) Dihydropyrimidine amidohydrolase Pyd2 {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase) domain: Dihydropyrimidine amidohydrolase Pyd2 species: Dictyostelium discoideum [TaxId: 44689]
Probab=98.69 E-value=6.9e-09 Score=88.25 Aligned_cols=66 Identities=17% Similarity=0.345 Sum_probs=53.7
Q ss_pred ccEEEEcCeEEeCCCCCCeeeEEEEECCEEEEecChHHHHhhccCCCeEEeCCCCeeecc-cccccccccccC
Q 008063 45 ADLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPG-FIDSHVHFIPGG 116 (579)
Q Consensus 45 ~~~likn~~v~~~~~~~~~~~~v~I~~GkI~~Ig~~~~~~~~~~~~~~viD~~g~~V~PG-~ID~H~H~~~~~ 116 (579)
.+++|||++|++.+. ...++|+|+||+|.+|+.+.+. +.++++||+.|++++++ ..|+|+|++.+.
T Consensus 2 ~~iLIkng~iv~~~~--~~~~DIlI~~G~I~~I~~~i~~----~~~~~iida~gk~v~i~~G~dad~~i~dp~ 68 (150)
T d2ftwa1 2 GTILIKNGTVVNDDR--YFKSDVLVENGIIKEISKNIEP----KEGIKVVDATDKLLLIDVGCDGDIVIWDPN 68 (150)
T ss_dssp CCEEEESCEEECSSC--EEECEEEEETTEEEEEESCCCC----CSSCCEEECTTCEEECSTTSBCCEEEEEEE
T ss_pred CCEEEECCEEECCCC--cEEeeEEEECCEEEEEeccCCC----CCccEEEecccceeeeecCccCceEEEecC
Confidence 369999999998643 3678999999999999975332 25689999999999666 599999998764
|
| >d2eg6a1 c.1.9.4 (A:4-346) Dihydroorotase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Dihydroorotase domain: Dihydroorotase species: Escherichia coli [TaxId: 562]
Probab=98.65 E-value=3.7e-07 Score=90.06 Aligned_cols=161 Identities=14% Similarity=0.134 Sum_probs=95.9
Q ss_pred CHHHHHHHHHHHHHCCCeEEEEecch-------HHHHHHHHHHHHHHHhcCCCCCCceEeeccCCChhhHHHHhhC--Cc
Q 008063 364 ELESLLSMTMASDKSGLQVAIHAIGD-------RANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLASGTAARFGDQ--GI 434 (579)
Q Consensus 364 ~~~~l~~~~~~a~~~g~~i~iH~~g~-------~~~~~~~~~~~~~~~~~~~~~~~~~i~H~~~~~~~~~~~~~~~--~i 434 (579)
....+...+......+..+..|+... ....+........ ......+.+.++.|... .+.++.+++. .+
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~eae~~~~~~~~-~l~~~~~~~~Hi~HiSt--~~~v~~ir~~~~~v 191 (343)
T d2eg6a1 115 SVDAIMPVLERMEKIGMPLLVHGEVTHADIDIFDREARFIESVMEP-LRQRLTALKVVFEHITT--KDAADYVRDGNERL 191 (343)
T ss_dssp CGGGGHHHHHHHHHHTCCEEECCCCCCTTSCGGGHHHHHHHHTHHH-HHHHCTTCCEEECSCCS--HHHHHHHHTSCTTE
T ss_pred chHHHHHHHHHHHHhCchhhhcCccccccccccchhhhhHHHHHHH-HHhhccCceEEEEecch--hHHHHHHHhcCCCc
Confidence 34556778888888999999997521 1111111111111 11112345666666643 4556666554 58
Q ss_pred EEEecccccccchhHHHH--------hhChhhhhhhhh-hHHHHHHCCCeeeecCCCCCCCC----------------CH
Q 008063 435 VASMQPQHLLDDADSARK--------KLGVDRAERESY-LFQSLLANNALLALGSDWPVADI----------------NP 489 (579)
Q Consensus 435 ~~~~~p~~~~~~~~~~~~--------~l~~~~~~~~~~-~l~~l~~~Gi~v~~gsD~~~~~~----------------~~ 489 (579)
++.+||++...+.+.+.. ..+|.|.++... .+..+.+.++...++||.+.... ..
T Consensus 192 t~EvtPHhL~L~~~d~~~~~~~~~~k~nPPlR~~~d~~~l~~~~~~g~i~d~iatDHaPh~~e~K~~~~~~~g~~g~e~~ 271 (343)
T d2eg6a1 192 AATITPQHLMFNRNHMLVGGVRPHLYCLPILKRNIHQQALRELVASGFNRVFLGTDSAPHARHRKESSCGCAGCFNAPTA 271 (343)
T ss_dssp EEEECHHHHHCCHHHHHTTSBCGGGCCSSCCCCHHHHHHHHHHHHTTCTTEEECCCBCCCCHHHHSSTTBCCCCCCTTTH
T ss_pred ceeecCcHHHhhhhhhhcCCCccceeeeccccccchhhHHHHHHHcCCCeeeeecCCCCcccccccccccccccCChHHH
Confidence 999999998877666532 335555434443 44455566677899999764320 01
Q ss_pred HHHHHHHHcccCCCCCCCCCCCCCCCHHHHHHHHcHHHHHhcccCCccccc
Q 008063 490 LCAIRTAMKRIPPGWDNAWIPSERISLTDALIAHTLSAARACFLENDVGSL 540 (579)
Q Consensus 490 ~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~npA~~lgl~~~~G~I 540 (579)
+..+...+. ..+++++++++.+.|||+++||....|.|
T Consensus 272 l~l~l~~~~-------------~~~~L~~lv~~~S~nPaki~gL~~~kg~I 309 (343)
T d2eg6a1 272 LGSYATVFE-------------EMNALQHFEAFCSVNGPQFYGLPVNDTFI 309 (343)
T ss_dssp HHHHHHHHH-------------HTTCGGGHHHHHHTHHHHHHTCCCCCSEE
T ss_pred HHHHHHHHH-------------hcCCHHHHHHHHhHhHHHHhCCCCCCCeE
Confidence 111111111 13588999999999999999998767765
|
| >d1onwa2 c.1.9.13 (A:63-346) Isoaspartyl dipeptidase, catalytic domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Isoaspartyl dipeptidase, catalytic domain domain: Isoaspartyl dipeptidase, catalytic domain species: Escherichia coli [TaxId: 562]
Probab=98.61 E-value=9.5e-08 Score=90.56 Aligned_cols=26 Identities=35% Similarity=0.233 Sum_probs=23.7
Q ss_pred CCCCHHHHHHHHcHHHHHhcccCCccc
Q 008063 512 ERISLTDALIAHTLSAARACFLENDVG 538 (579)
Q Consensus 512 ~~ls~~~al~~~T~npA~~lgl~~~~G 538 (579)
.|+|++++++++|.|||++|||++ +|
T Consensus 259 ~gls~~~al~~aT~npAr~lGL~~-kG 284 (284)
T d1onwa2 259 YDFSISDALRPLTSSVAGFLNLTG-KG 284 (284)
T ss_dssp HCCCHHHHHGGGTHHHHHHTTCTT-CS
T ss_pred cCCCHHHHHHHHHHHHHHHhCCCC-CC
Confidence 469999999999999999999986 55
|
| >d1xrta1 b.92.1.3 (A:1-55,A:366-422) Two-domain dihydroorotase {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase) domain: Two-domain dihydroorotase species: Aquifex aeolicus [TaxId: 63363]
Probab=98.56 E-value=2.7e-08 Score=80.59 Aligned_cols=57 Identities=19% Similarity=0.368 Sum_probs=49.4
Q ss_pred CccEEEEcCeEEeCCCCCCeeeEEEEECCEEEEecChHHHHhhccCCCeEEeCCCCeeeccc
Q 008063 44 EADLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGF 105 (579)
Q Consensus 44 ~~~~likn~~v~~~~~~~~~~~~v~I~~GkI~~Ig~~~~~~~~~~~~~~viD~~g~~V~PG~ 105 (579)
||+++|||++|+|+.+......+|+|++|+|++|++... ...+++||+.|++++||+
T Consensus 1 m~~~likng~viDp~~g~~~~~DllI~~GkI~~I~~~i~-----~~~a~viD~~g~~~~~~l 57 (112)
T d1xrta1 1 MLKLIVKNGYVIDPSQNLEGEFDILVENGKIKKIDKNIL-----VPEAEIIDAKGLIVCPTL 57 (112)
T ss_dssp CCEEEEESCEEEEGGGTEEEECEEEEETTEEEEEESSCC-----CSSEEEEECTTSEEEECC
T ss_pred CceeEEeCeEEECCCCCccceeeEEEECCEEEEeecCCC-----cccceEEehhccccccee
Confidence 578999999999997776677799999999999987543 255799999999999998
|
| >d2i9ua1 b.92.1.4 (A:9-66,A:377-427) Guanine deaminase {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: SAH/MTA deaminase-like domain: Guanine deaminase species: Clostridium acetobutylicum [TaxId: 1488]
Probab=98.54 E-value=7.5e-09 Score=83.29 Aligned_cols=57 Identities=16% Similarity=0.237 Sum_probs=46.9
Q ss_pred HHcHHHHHhcccCCccccccCCCcccEEEeCCCCCC--C--hhh----cc----CCeEEEEEECCEEeC
Q 008063 522 AHTLSAARACFLENDVGSLSPGKIADFVILSTSSWE--D--FAA----EV----SASIEATYVSGVQAY 578 (579)
Q Consensus 522 ~~T~npA~~lgl~~~~G~I~~G~~ADlvvld~~~~~--~--~~~----~~----~~~v~~v~v~G~~v~ 578 (579)
++|.++|+.+++++++|+|||||.||++++|.+... + ..+ +. +..|..|||+||.||
T Consensus 41 pat~~ga~~~~~~~~ig~~e~Gk~AD~vviD~~~~~~~~~~~~d~L~~li~~gd~r~V~~V~V~G~~VY 109 (109)
T d2i9ua1 41 PDKYKGNPIIDFRNNIIIFEEGYDFDALVINDSNLYPEDYDLTERLERFIYLGDDRNIMKRYVCGNEIF 109 (109)
T ss_dssp CGGGTTSCEEEEEEEEEECSTTCBCCEEEECCTTSCGGGSCHHHHHHHHHHHCCGGGEEEEEETTEEEC
T ss_pred HHHhCCceeeccccceeeecCCCEeeEEEEcCCCcchhhhhhhhHHHHheeeCCCCceeEEEECCEECC
Confidence 368899999999999999999999999999976432 1 112 11 669999999999998
|
| >d1p1ma1 b.92.1.4 (A:1-49,A:331-404) Hypothetical protein TM0936 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: SAH/MTA deaminase-like domain: Hypothetical protein TM0936 species: Thermotoga maritima [TaxId: 2336]
Probab=98.43 E-value=1.3e-09 Score=89.13 Aligned_cols=64 Identities=20% Similarity=0.095 Sum_probs=52.8
Q ss_pred CCHHHHHHHHcHHHHHhcccCCccccccCCCcccEEEeCCCCCC--C----hhhcc---CCeEEEEEECCEEeC
Q 008063 514 ISLTDALIAHTLSAARACFLENDVGSLSPGKIADFVILSTSSWE--D----FAAEV---SASIEATYVSGVQAY 578 (579)
Q Consensus 514 ls~~~al~~~T~npA~~lgl~~~~G~I~~G~~ADlvvld~~~~~--~----~~~~~---~~~v~~v~v~G~~v~ 578 (579)
.+.+++++++|+.+|..+|..+ +|+|++|+.|||+++|.+... + ..++. ..+|.+||++|++|+
T Consensus 26 ~t~~~~~~~~t~~~a~~~G~~~-~GrIe~G~~ADivviDl~~p~~~p~~dp~~~lV~~~~~~V~~V~V~Gk~Vv 98 (123)
T d1p1ma1 26 GTIKRVLQGEVKVDLDLSGKLV-MPKIEEGWNADLVVIDLDLPEMFPVQNIKNHLVHAFSGEVFATMVAGKWIY 98 (123)
T ss_dssp TEEEEEEESSCCCSEECTTEEE-EESCCTTSBCCEEEEECCSGGGCSGGGHHHHHHHTCCSCCSEEEETTEEEE
T ss_pred ccHHHHHhhhhccChhhcCCcc-ccccCCCCCcCEEEEeCCCCcccchhhhHHHHHhccCCCccEEEECCEEEE
Confidence 4778899999999999999986 899999999999999988532 2 22221 457999999999986
|
| >d1bf6a_ c.1.9.3 (A:) Phosphotriesterase homology protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Phosphotriesterase-like domain: Phosphotriesterase homology protein species: Escherichia coli [TaxId: 562]
Probab=98.42 E-value=3.5e-06 Score=80.76 Aligned_cols=144 Identities=10% Similarity=0.064 Sum_probs=90.5
Q ss_pred HHHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhcCCCCCCceEeec-cCCChhhHHHHhhCCcEEEeccccc
Q 008063 365 LESLLSMTMASDKSGLQVAIHAIGDRANDLVLDMYKSVVVTTGKRDQRFRIEHA-QHLASGTAARFGDQGIVASMQPQHL 443 (579)
Q Consensus 365 ~~~l~~~~~~a~~~g~~i~iH~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~H~-~~~~~~~~~~~~~~~i~~~~~p~~~ 443 (579)
.+.+++.++.|++.|+|+.+|+.........++.+. ..+....+..+.|| ...+.+.++++.+.|..++..-...
T Consensus 137 ~~~f~~~~~~A~~~~lPv~iH~r~~~~~~e~~~~l~----~~~~~~~~~~~~H~~f~~~~e~~~~~~~~G~~i~~~g~~~ 212 (291)
T d1bf6a_ 137 EKVFIAAALAHNQTGRPISTHTSFSTMGLEQLALLQ----AHGVDLSRVTVGHCDLKDNLDNILKMIDLGAYVQFDTIGK 212 (291)
T ss_dssp HHHHHHHHHHHHHHCCCEEEECGGGCSHHHHHHHHH----HTTCCGGGEEECCCCSSCCHHHHHHHHHTTCEEEECCTTC
T ss_pred HHHHHHHHHHHHHhCCCeEEeccchhhhHHHHHHHH----HhCCCcccceecccCCCCCHHHHHHHHhcCeeEEeccccc
Confidence 346888999999999999999964322223333322 23444446678898 5677889999999998887752221
Q ss_pred ccchhHHHHhhChhhhhhhhhhHHHHHHCCC--eeeecCCCCCCCCCH-------HHHHHHHHcccCCCCCCCCCCCCCC
Q 008063 444 LDDADSARKKLGVDRAERESYLFQSLLANNA--LLALGSDWPVADINP-------LCAIRTAMKRIPPGWDNAWIPSERI 514 (579)
Q Consensus 444 ~~~~~~~~~~l~~~~~~~~~~~l~~l~~~Gi--~v~~gsD~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~l 514 (579)
.... +. . .....++.+.+.+- ++.++||+|...+-+ ..-+...+... .+.|+
T Consensus 213 ~~~~-------~~--~-~~~~~~~~lv~~~p~drilleTD~p~~~p~~~~g~~~~~~~~~~~~~~l---------~~~g~ 273 (291)
T d1bf6a_ 213 NSYY-------PD--E-KRIAMLHALRDRGLLNRVMLSMDITRRSHLKANGGYGYDYLLTTFIPQL---------RQSGF 273 (291)
T ss_dssp TTTS-------CH--H-HHHHHHHHHHHTTCGGGEEECCCCCSGGGSGGGTSCCTTHHHHTHHHHH---------HHTTC
T ss_pred ccCC-------cH--H-HhHHHHHHHHHhCCchhEEEecCCCCccccccCCCCCchhHHHHHHHHH---------HHcCC
Confidence 1000 00 0 22345678888764 699999988543211 11111111111 12469
Q ss_pred CHHHHHHHHcHHHHHhc
Q 008063 515 SLTDALIAHTLSAARAC 531 (579)
Q Consensus 515 s~~~al~~~T~npA~~l 531 (579)
+.+++-++.+.||++++
T Consensus 274 s~e~i~~i~~~Np~rlf 290 (291)
T d1bf6a_ 274 SQADVDVMLRENPSQFF 290 (291)
T ss_dssp CHHHHHHHHTHHHHHHC
T ss_pred CHHHHHHHHHHHHHHHc
Confidence 99999999999999986
|
| >d2paja1 b.92.1.4 (A:10-69,A:406-484) Hypothetical protein GOS_1943094 {Environmental samples} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: SAH/MTA deaminase-like domain: Hypothetical protein GOS 1943094 species: Environmental samples
Probab=98.40 E-value=2.3e-08 Score=84.13 Aligned_cols=96 Identities=17% Similarity=0.136 Sum_probs=65.5
Q ss_pred HHHCCCeeeecCCCCCCCCCHHHHHHHHHcccCCCCCCCCCCCCCCCHHHHHHHHcHHHHHhcccCCccccccCCCcccE
Q 008063 469 LLANNALLALGSDWPVADINPLCAIRTAMKRIPPGWDNAWIPSERISLTDALIAHTLSAARACFLENDVGSLSPGKIADF 548 (579)
Q Consensus 469 l~~~Gi~v~~gsD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~npA~~lgl~~~~G~I~~G~~ADl 548 (579)
|++++..++.|+|+..+.+. |... .. ......+.++++.++|.++|+.+|..+.+|+|++||.|||
T Consensus 4 li~n~~av~~g~~G~a~~~~----------rv~a---~d-~r~~~~~~~~i~~~at~~Ga~~l~~~~~ig~l~~G~~ADl 69 (139)
T d2paja1 4 LIRNAAAIMTGGRGTADDPS----------RVPG---PD-IRIVGDTIDAIGALAPRPGETIVDATDCVIYVAVGYAADI 69 (139)
T ss_dssp EEECBSEEBCCCCSSSSSCS----------BCCC---CC-EEEETTEEEEESSCCCCTTCEEEECBTCEEECSTTSBCCE
T ss_pred HHhchhhhhhCCCCCCCCcc----------cccc---hh-hHhhcccHHHHHhhhhhccchhcCCCCccceeccCCcccE
Confidence 45678889999997654211 0000 00 0001123444556899999999999999999999999999
Q ss_pred EEeCCCC-----CC-Chhhcc----CCeEEEEEECCEEeC
Q 008063 549 VILSTSS-----WE-DFAAEV----SASIEATYVSGVQAY 578 (579)
Q Consensus 549 vvld~~~-----~~-~~~~~~----~~~v~~v~v~G~~v~ 578 (579)
+++|.+. .. ++.++. ...|.+||++||+++
T Consensus 70 i~~d~~~p~~~p~~dp~~~lV~~~~~~~V~~v~V~G~~vv 109 (139)
T d2paja1 70 AVYRLDDPRYFGLHDPAIGPVASGGRPSVMALFSAGKRVV 109 (139)
T ss_dssp EEEECCSGGGTTCSSGGGHHHHSCSCCEEEEEEETTEEEE
T ss_pred EEEcCCCcccCCCCCHHHHHHHhhCcCcceeEEEcCEEEE
Confidence 9999773 22 223322 568999999999985
|
| >d2puza1 b.92.1.10 (A:17-79,A:381-420) Imidazolonepropionase {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Imidazolonepropionase-like domain: Imidazolonepropionase species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.30 E-value=1.4e-08 Score=80.94 Aligned_cols=63 Identities=17% Similarity=0.051 Sum_probs=49.8
Q ss_pred CHHHHHHHHcHHHHHhcccCCccccccCCCcccEEEeCCCCCC-ChhhccCCeEEEEEECCEEe
Q 008063 515 SLTDALIAHTLSAARACFLENDVGSLSPGKIADFVILSTSSWE-DFAAEVSASIEATYVSGVQA 577 (579)
Q Consensus 515 s~~~al~~~T~npA~~lgl~~~~G~I~~G~~ADlvvld~~~~~-~~~~~~~~~v~~v~v~G~~v 577 (579)
.+++.+...|.++++.++++++.++|++||.|||+|||.+.+. -+-.+....+..||++||+|
T Consensus 39 G~~~~l~~~~~~aa~viDl~Grlv~i~~Gk~AD~~i~~~~~~~~l~Y~~g~~~~~~v~~~G~~v 102 (103)
T d2puza1 39 GPESDLPDDLSTADETTDCGGRWITLEAGKSADFAIWDIERPAELVYRIGFNPLHARIFKGQKV 102 (103)
T ss_dssp EETTSCCGGGSCCSEEEECTTCEEECCTTSBCCEEEECCSSTTHHHHCBSCCCEEEEEETTEEC
T ss_pred ChhhhcchhhhchHhhcCCCCCEEEeeccceeeEEEEcCCCHHHHHHhhcCCChhEEEECCEEc
Confidence 3334445667788999999999999999999999999986544 22333466899999999987
|
| >d1yixa1 c.1.9.12 (A:1-265) Putative deoxyribonuclease YcfH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: TatD Mg-dependent DNase-like domain: Putative deoxyribonuclease YcfH species: Escherichia coli [TaxId: 562]
Probab=98.30 E-value=4.4e-06 Score=78.76 Aligned_cols=141 Identities=17% Similarity=0.149 Sum_probs=93.1
Q ss_pred HHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhcCCCCCCceEeeccCCChhhHHHHhhCCcEEEeccccccc
Q 008063 366 ESLLSMTMASDKSGLQVAIHAIGDRANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLASGTAARFGDQGIVASMQPQHLLD 445 (579)
Q Consensus 366 ~~l~~~~~~a~~~g~~i~iH~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~H~~~~~~~~~~~~~~~~i~~~~~p~~~~~ 445 (579)
+.+.+-++.|.+.+.|+.+|+.+.. +..++.+.+.... ..-.+.|+...+.+.++++.+.|..++..+.....
T Consensus 111 ~~f~~ql~lA~~~~lPv~iH~r~a~--~~~~~il~~~~~~-----~~~~v~H~FsG~~~~a~~~l~~g~~~s~~g~~~~~ 183 (265)
T d1yixa1 111 ESFIHHIQIGRELNKPVIVHTRDAR--ADTLAILREEKVT-----DCGGVLHCFTEDRETAGKLLDLGFYISFSGIVTFR 183 (265)
T ss_dssp HHHHHHHHHHHHHTCCEEEEEESCH--HHHHHHHHHTTGG-----GTCEEETTCCSCHHHHHHHHTTTCEEEECGGGGST
T ss_pred HHHHHHHHHHHHhCCCcccchhhHH--HHHHHHHHhhccc-----CcceEEEeecCChHHHHHHHHcCCeecCccccccc
Confidence 3577889999999999999997543 3334433332111 13368999999999999999999999988765432
Q ss_pred chhHHHHhhChhhhhhhhhhHHHHHH-CCC-eeeecCCCCCCCCCH----------HHHHHHHHcccCCCCCCCCCCCCC
Q 008063 446 DADSARKKLGVDRAERESYLFQSLLA-NNA-LLALGSDWPVADINP----------LCAIRTAMKRIPPGWDNAWIPSER 513 (579)
Q Consensus 446 ~~~~~~~~l~~~~~~~~~~~l~~l~~-~Gi-~v~~gsD~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~ 513 (579)
... .++++.+ -.. ++.+-||+|..++.+ ...+-..+.. -.+
T Consensus 184 ~~~----------------~l~~~v~~iPldrlLlETD~P~~~p~~~~~~~n~P~~i~~~~~~iA~-----------i~~ 236 (265)
T d1yixa1 184 NAE----------------QLRDAARYVPLDRLLVETDSPYLAPVPHRGKENQPAMVRDVAEYMAV-----------LKG 236 (265)
T ss_dssp TCH----------------HHHHHHHHSCGGGEEECCCBTSCCCTTCTTSCCCGGGHHHHHHHHHH-----------HHT
T ss_pred hhH----------------HHHHHHHhcchhceEeecCCcccCccccCCCCCCcHHHHHHHHHHHH-----------HHC
Confidence 211 1222222 222 489999998654321 2222222221 125
Q ss_pred CCHHHHHHHHcHHHHHhcccCC-ccccc
Q 008063 514 ISLTDALIAHTLSAARACFLEN-DVGSL 540 (579)
Q Consensus 514 ls~~~al~~~T~npA~~lgl~~-~~G~I 540 (579)
++.+++.+..+.|.-+++|++. ++++|
T Consensus 237 ~~~~ev~~~~~~Na~~lf~l~~~~~~~~ 264 (265)
T d1yixa1 237 VAVEELAQVTTDNFARLFHIDASRLQSI 264 (265)
T ss_dssp SCHHHHHHHHHHHHHHHTTCCGGGGCCC
T ss_pred cCHHHHHHHHHHHHHHHhCCCHHHhccc
Confidence 8999999999999999999973 35554
|
| >d1a4ma_ c.1.9.1 (A:) Adenosine deaminase (ADA) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Adenosine/AMP deaminase domain: Adenosine deaminase (ADA) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.28 E-value=2.7e-05 Score=76.44 Aligned_cols=139 Identities=14% Similarity=0.098 Sum_probs=99.8
Q ss_pred HHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhcCCCCCCceEeeccCC--ChhhHHHHhhCCcEEEeccccc
Q 008063 366 ESLLSMTMASDKSGLQVAIHAIGDRANDLVLDMYKSVVVTTGKRDQRFRIEHAQHL--ASGTAARFGDQGIVASMQPQHL 443 (579)
Q Consensus 366 ~~l~~~~~~a~~~g~~i~iH~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~H~~~~--~~~~~~~~~~~~i~~~~~p~~~ 443 (579)
....++++.|++.|+++.+|+-+....+.+.+++.. .+ ..+|.|+..+ +++.++++++.+|.+.+||.+|
T Consensus 192 ~~~~~~f~~ar~~gl~~t~HaGE~~~~~~i~~ai~~----l~----~~RIGHG~~l~~d~~l~~~~~~~~I~lEvCptSN 263 (349)
T d1a4ma_ 192 PGHVEAYEGAVKNGIHRTVHAGEVGSPEVVREAVDI----LK----TERVGHGYHTIEDEALYNRLLKENMHFEVCPWSS 263 (349)
T ss_dssp HHHHHHHHHHHHHTCEEEEEESSSSCHHHHHHHHHT----SC----CSEEEECGGGGGSHHHHHHHHHTTCEEEECHHHH
T ss_pred HHHHHHHHHHHHcCCceeeccCCCCChHHHHHHHHH----hC----CcccCCceecccCHHHHHHhhhcCceEEEccccc
Confidence 346678999999999999999754433333333321 22 5699999987 6688899999999999999998
Q ss_pred ccchhHHHHhhChhhhhhhhhhHHHHHHCCCeeeecCCCCCCC-CCHHHHHHHHHcccCCCCCCCCCCCCCCCHHHHHHH
Q 008063 444 LDDADSARKKLGVDRAERESYLFQSLLANNALLALGSDWPVAD-INPLCAIRTAMKRIPPGWDNAWIPSERISLTDALIA 522 (579)
Q Consensus 444 ~~~~~~~~~~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~ 522 (579)
...+ .-.. -...|++.++++|++++++||.+... .++-.+...+.. ..+++.++..++
T Consensus 264 ~~~~--------~~~~-~~~HP~~~~~~~gv~v~i~TDDp~~f~t~Ls~Ey~~a~~------------~~~l~~~~l~~l 322 (349)
T d1a4ma_ 264 YLTG--------AWDP-KTTHAVVRFKNDKANYSLNTDDPLIFKSTLDTDYQMTKK------------DMGFTEEEFKRL 322 (349)
T ss_dssp HHSS--------SSCT-TSCCHHHHHHHTTCCEEECCBCTTTTTCCHHHHHHHHHH------------TTTCCHHHHHHH
T ss_pred cccc--------ccCc-hhhHHHHHHHHCCCeEEEeCCCccccCCCHHHHHHHHHH------------HhCcCHHHHHHH
Confidence 6321 1111 23568999999999999999977543 566666665553 345999995555
Q ss_pred HcHHHHHhcccC
Q 008063 523 HTLSAARACFLE 534 (579)
Q Consensus 523 ~T~npA~~lgl~ 534 (579)
+ .|+-++-.++
T Consensus 323 ~-~nsi~~sf~~ 333 (349)
T d1a4ma_ 323 N-INAAKSSFLP 333 (349)
T ss_dssp H-HHHHHTSSCC
T ss_pred H-HHHHHHhCCC
Confidence 4 6887776654
|
| >d2amxa1 c.1.9.1 (A:20-376) Adenosine deaminase (ADA) {Plasmodium yoelii [TaxId: 5861]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Adenosine/AMP deaminase domain: Adenosine deaminase (ADA) species: Plasmodium yoelii [TaxId: 5861]
Probab=98.27 E-value=1.1e-06 Score=86.82 Aligned_cols=137 Identities=15% Similarity=0.111 Sum_probs=95.6
Q ss_pred HHHHHHHHHHCCCeEEEEecchH---HHHHHHHHHHHHHHhcCCCCCCceEeeccCC--ChhhHHHHhhCCcEEEecccc
Q 008063 368 LLSMTMASDKSGLQVAIHAIGDR---ANDLVLDMYKSVVVTTGKRDQRFRIEHAQHL--ASGTAARFGDQGIVASMQPQH 442 (579)
Q Consensus 368 l~~~~~~a~~~g~~i~iH~~g~~---~~~~~~~~~~~~~~~~~~~~~~~~i~H~~~~--~~~~~~~~~~~~i~~~~~p~~ 442 (579)
...+++.|++.|+++.+|+-+.. ..+.+.+++. ..+ ...|.|+..+ +++.++++++.++.+.+||.+
T Consensus 203 ~~~~f~~ar~~gl~it~HaGE~~~~~~~~~i~~ai~----~l~----~~RIgHGv~~~~d~~l~~~l~~~~I~leiCPtS 274 (357)
T d2amxa1 203 HKDVYHSVRDHGLHLTVHAGEDATLPNLNTLYTAIN----ILN----VERIGHGIRVSESDELIELVKKKDILLEVCPIS 274 (357)
T ss_dssp GHHHHHHHHHTTCEEEEEESCCTTCSSSHHHHHHHH----TSC----CSEEEECGGGGGCHHHHHHHHHHTCEEEECHHH
T ss_pred hHHHHHHHHhcCCcccccccccCCCCChHHHHHHHH----ccC----CcccccchheecCHHHHHHHHHhCceEEECCcc
Confidence 46788999999999999996422 2333333322 122 5689999987 678899999999999999999
Q ss_pred cccchhHHHHhhChhhhhhhhhhHHHHHHCCCeeeecCCCCCC-CCCHHHHHHHHHcccCCCCCCCCCCCCCCCHHHHHH
Q 008063 443 LLDDADSARKKLGVDRAERESYLFQSLLANNALLALGSDWPVA-DINPLCAIRTAMKRIPPGWDNAWIPSERISLTDALI 521 (579)
Q Consensus 443 ~~~~~~~~~~~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~ 521 (579)
|.. ++.-.. -...|++.++++|++++++||.+.. ..++-.+...++.. .+++.++..+
T Consensus 275 N~~--------~~~~~~-~~~HP~~~l~~~Gv~v~l~TDDp~~f~t~ls~ey~~~~~~------------~~ls~~el~~ 333 (357)
T d2amxa1 275 NLL--------LNNVKS-MDTHPIRKLYDAGVKVSVNSDDPGMFLSNINDNYEKLYIH------------LNFTLEEFMI 333 (357)
T ss_dssp HHH--------TTSSSC-STTCTHHHHHHTTCEEEECCBCHHHHTCCHHHHHHHHHHH------------HCCCHHHHHH
T ss_pred hhh--------hccCCC-cccCHHHHHHHCCCeEEEeCCCchhhCCCHHHHHHHHHHH------------cCCCHHHHHH
Confidence 862 221111 2245899999999999999997632 34555565555432 3589999554
Q ss_pred HHcHHHHHhcccC
Q 008063 522 AHTLSAARACFLE 534 (579)
Q Consensus 522 ~~T~npA~~lgl~ 534 (579)
++.|+-++-.++
T Consensus 334 -l~~nsi~~sF~~ 345 (357)
T d2amxa1 334 -MNNWAFEKSFVS 345 (357)
T ss_dssp -HHHHHHHHCCSC
T ss_pred -HHHHHHHHhCCC
Confidence 567887766554
|
| >d1zzma1 c.1.9.12 (A:1-259) Putative deoxyribonuclease YjjV {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: TatD Mg-dependent DNase-like domain: Putative deoxyribonuclease YjjV species: Escherichia coli [TaxId: 562]
Probab=98.19 E-value=1.3e-05 Score=75.13 Aligned_cols=134 Identities=16% Similarity=0.045 Sum_probs=87.8
Q ss_pred HHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhcCCCCCCceEeeccCCChhhHHHHhhCCcEEEeccccccc
Q 008063 366 ESLLSMTMASDKSGLQVAIHAIGDRANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLASGTAARFGDQGIVASMQPQHLLD 445 (579)
Q Consensus 366 ~~l~~~~~~a~~~g~~i~iH~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~H~~~~~~~~~~~~~~~~i~~~~~p~~~~~ 445 (579)
+.+++.++.|.++++|+.+|+.+.. +..++.+.+. . ..+..+.|+...+.+.++++.+.|..+++.+.....
T Consensus 114 ~~f~~ql~lA~~~~~Pv~IH~r~a~--~~~~~~l~~~----~--~~~~~i~H~f~g~~~~~~~~l~~g~~~si~~~~~~~ 185 (259)
T d1zzma1 114 WLLDEQLKLAKRYDLPVILHSRRTH--DKLAMHLKRH----D--LPRTGVVHGFSGSLQQAERFVQLGYKIGVGGTITYP 185 (259)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEESCH--HHHHHHHHHH----C--CTTCEEETTCCSCHHHHHHHHHTTCEEEECGGGGCT
T ss_pred HHHHHHHHHHHHhccchhhhhHHHH--HHHHHhhhcc----c--cccceeeecccCCHHHHHHHHHcCCCcccccccccc
Confidence 4577889999999999999997543 3334433322 1 124478999999999999999999999888755431
Q ss_pred chhHHHHhhChhhhhhhhhhHHHHHH-CCC-eeeecCCCCCCCCC----------HHHHHHHHHcccCCCCCCCCCCCCC
Q 008063 446 DADSARKKLGVDRAERESYLFQSLLA-NNA-LLALGSDWPVADIN----------PLCAIRTAMKRIPPGWDNAWIPSER 513 (579)
Q Consensus 446 ~~~~~~~~l~~~~~~~~~~~l~~l~~-~Gi-~v~~gsD~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~ 513 (579)
... .++.+.+ -.. ++.+-||+|...+. ....+-..+.. -.+
T Consensus 186 ~~~----------------~~~~~v~~iPldriL~ETD~P~~~~~~~~~~~~~P~~~~~~~~~iA~-----------i~~ 238 (259)
T d1zzma1 186 RAS----------------KTRDVIAKLPLASLLLETDAPDMPLNGFQGQPNRPEQAARVFAVLCE-----------LRR 238 (259)
T ss_dssp TTC----------------SHHHHHHHSCGGGEEECCCBTSSCCTTCTTSCCCGGGHHHHHHHHHH-----------HCS
T ss_pred chH----------------HHHHHHHhhccceEEEecCCCCcCCCcCCCCCCchHHHHHHHHHHHH-----------HhC
Confidence 111 1112221 122 48899998854322 12222222221 235
Q ss_pred CCHHHHHHHHcHHHHHhcccC
Q 008063 514 ISLTDALIAHTLSAARACFLE 534 (579)
Q Consensus 514 ls~~~al~~~T~npA~~lgl~ 534 (579)
++.+++.+..+.|.-+++|++
T Consensus 239 ~~~~ev~~~~~~N~~rlf~lp 259 (259)
T d1zzma1 239 EPADEIAQALLNNTYTLFNVP 259 (259)
T ss_dssp SCHHHHHHHHHHHHHHHHCCC
T ss_pred CCHHHHHHHHHHHHHHHhCCC
Confidence 899999999999999999874
|
| >d1e9yb1 b.92.1.1 (B:1-131,B:432-480) alpha-Subunit of urease {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: alpha-Subunit of urease domain: alpha-Subunit of urease species: Helicobacter pylori [TaxId: 210]
Probab=98.10 E-value=2.1e-06 Score=72.17 Aligned_cols=74 Identities=22% Similarity=0.334 Sum_probs=59.7
Q ss_pred CCCccEEEEcCeEEeCCCCCCeeeEEEEECCEEEEecChHHHHh--------hccCCCeEEeCCCCeeeccc----cccc
Q 008063 42 NLEADLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQ--------LAADGTNVLNLQGKVVVPGF----IDSH 109 (579)
Q Consensus 42 ~~~~~~likn~~v~~~~~~~~~~~~v~I~~GkI~~Ig~~~~~~~--------~~~~~~~viD~~g~~V~PG~----ID~H 109 (579)
....+++|.|+.|+|..+. .+.+|-|+||||+.||+...+.. ..+...++|.++|++++||= ||.|
T Consensus 63 ~~~~D~vitna~iid~~Gi--~kadiGikdG~I~~iGkaGnPd~mdgv~~~~iig~~Tevi~geg~I~TaGADlVlwd~h 140 (180)
T d1e9yb1 63 KEELDLIITNALIVDYTGI--YKADIGIKDGKIAGIGKGGNKDMQDGVKNNLSVGPATEALAGEGLIVTAGADLVLWSPA 140 (180)
T ss_dssp TTCCSEEEEEEEEEETTEE--EEEEEEEETTEEEEEECCBCTTTSSSCCGGGBCCTTCEEEECTTCEEEECCCEEEECTT
T ss_pred ccccceEEEeeEEeccCCe--EEeeeeeeCCEEEEeeccCCccccCCCCCCeEECCCceEEecCCceEecCcceEEEchh
Confidence 3457999999999997653 78899999999999996543211 22567899999999999996 9999
Q ss_pred ccccccCc
Q 008063 110 VHFIPGGL 117 (579)
Q Consensus 110 ~H~~~~~~ 117 (579)
+|+..+.+
T Consensus 141 ~hgIkPq~ 148 (180)
T d1e9yb1 141 FFGVKPNM 148 (180)
T ss_dssp TTTTCCSE
T ss_pred hcCCCHHH
Confidence 99876644
|
| >d2puza1 b.92.1.10 (A:17-79,A:381-420) Imidazolonepropionase {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Imidazolonepropionase-like domain: Imidazolonepropionase species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.08 E-value=2.7e-06 Score=67.27 Aligned_cols=70 Identities=17% Similarity=0.102 Sum_probs=57.6
Q ss_pred cEEEEcCeEEeCCCCCC-----eeeEEEEECCEEEEecChHHHHhhccCCCeEEeCCCCeeeccccccccccccc
Q 008063 46 DLVVTNGVIFTGDDSLL-----FADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHFIPG 115 (579)
Q Consensus 46 ~~likn~~v~~~~~~~~-----~~~~v~I~~GkI~~Ig~~~~~~~~~~~~~~viD~~g~~V~PG~ID~H~H~~~~ 115 (579)
+.+++|++|.+++.... +++.|+|++|||.++|+.++.+.......+++|++|+++.+.--..+-+....
T Consensus 2 ~~l~~n~~iaTm~~~~~~~g~ie~aAl~v~~g~I~~vG~~~~l~~~~~~aa~viDl~Grlv~i~~Gk~AD~~i~~ 76 (103)
T d2puza1 2 TALWRNAQLATLNPAMDGIGAVENAVIAVRNGRIAFAGPESDLPDDLSTADETTDCGGRWITLEAGKSADFAIWD 76 (103)
T ss_dssp EEEEEEEEEECCCTTSSTTCEEEEEEEEEETTEEEEEEETTSCCGGGSCCSEEEECTTCEEECCTTSBCCEEEEC
T ss_pred cEEEEcCEEEEcCCCCCcchHHHHHHHHhhCCCccccChhhhcchhhhchHhhcCCCCCEEEeeccceeeEEEEc
Confidence 57999999999865432 77899999999999999887765444567999999999999988888877543
|
| >d1xwya1 c.1.9.12 (A:1-260) Deoxyribonuclease TatD (MttC) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: TatD Mg-dependent DNase-like domain: Deoxyribonuclease TatD (MttC) species: Escherichia coli [TaxId: 562]
Probab=98.07 E-value=0.00017 Score=67.13 Aligned_cols=136 Identities=10% Similarity=0.004 Sum_probs=89.9
Q ss_pred HHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhcCCCCCCceEeeccCCChhhHHHHhhCCcEEEeccccccc
Q 008063 366 ESLLSMTMASDKSGLQVAIHAIGDRANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLASGTAARFGDQGIVASMQPQHLLD 445 (579)
Q Consensus 366 ~~l~~~~~~a~~~g~~i~iH~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~H~~~~~~~~~~~~~~~~i~~~~~p~~~~~ 445 (579)
+.+.+-++.|.++++|+.+|+.+.. +.+++.+.+.... ..-.+.|+...+.+.++++.+.|..++..+.....
T Consensus 108 ~~f~~ql~lA~~~~lPviiH~r~a~--~~~~~il~~~~~~-----~~~~v~H~f~g~~~~~~~~~~~g~~~s~~g~~~~~ 180 (260)
T d1xwya1 108 RAFVAQLRIAADLNMPVFMHCRDAH--ERFMTLLEPWLDK-----LPGAVLHCFTGTREEMQACVAHGIYIGITGWVCDE 180 (260)
T ss_dssp HHHHHHHHHHHHHTCCEEEEEESCH--HHHHHHHGGGGGG-----SSCEEECSCCCCHHHHHHHHHTTCEEEECGGGGCT
T ss_pred HHHHHHHHHHHhcCCceEeeeccch--hHHHHHHHHhhcc-----CcccchhhhhccHHHHHHhhhhccccccCccccch
Confidence 4567788999999999999997542 3444444433221 12367999999999999999999999888654431
Q ss_pred chhHHHHhhChhhhhhhhhhHHHHHH-CCC-eeeecCCCCCCCCCH--------------HHHHHHHHcccCCCCCCCCC
Q 008063 446 DADSARKKLGVDRAERESYLFQSLLA-NNA-LLALGSDWPVADINP--------------LCAIRTAMKRIPPGWDNAWI 509 (579)
Q Consensus 446 ~~~~~~~~l~~~~~~~~~~~l~~l~~-~Gi-~v~~gsD~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~ 509 (579)
. ....++.+.+ -.. ++.+=||+|...+.+ ...+-..+..
T Consensus 181 ~---------------~~~~~~~~~~~iPldrlllETD~P~~~p~~~~~~~~~~~NeP~~l~~v~~~lA~---------- 235 (260)
T d1xwya1 181 R---------------RGLELRELLPLIPAEKLLIETDAPYLLPRDLTPKPSSRRNEPAHLPHILQRIAH---------- 235 (260)
T ss_dssp T---------------TSHHHHHHGGGSCGGGEEECCCTTSCCCTTCTTCCCSSCCCGGGHHHHHHHHHH----------
T ss_pred h---------------hHHHHHHHHHhhhhhheeeecCCCCCCCccccccccCCCCChHHHHHHHHHHHH----------
Confidence 1 0001222222 222 589999998654332 2222222221
Q ss_pred CCCCCCHHHHHHHHcHHHHHhcccC
Q 008063 510 PSERISLTDALIAHTLSAARACFLE 534 (579)
Q Consensus 510 ~~~~ls~~~al~~~T~npA~~lgl~ 534 (579)
-.|++.+++.+..+.|.-+++|++
T Consensus 236 -~~g~~~~ev~~~~~~N~~~~f~l~ 259 (260)
T d1xwya1 236 -WRGEDAAWLAATTDANVKTLFGIA 259 (260)
T ss_dssp -HHTCCHHHHHHHHHHHHHHHHCCC
T ss_pred -HhCcCHHHHHHHHHHHHHHHhCCC
Confidence 235899999999999999999985
|
| >d4ubpc1 b.92.1.1 (C:1-131,C:435-483) alpha-Subunit of urease {Bacillus pasteurii [TaxId: 1474]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: alpha-Subunit of urease domain: alpha-Subunit of urease species: Bacillus pasteurii [TaxId: 1474]
Probab=98.04 E-value=2.7e-06 Score=71.49 Aligned_cols=69 Identities=23% Similarity=0.372 Sum_probs=56.8
Q ss_pred CCCccEEEEcCeEEeCCCCCCeeeEEEEECCEEEEecChHHHHh--------hccCCCeEEeCCCCeeecccccccccc
Q 008063 42 NLEADLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQ--------LAADGTNVLNLQGKVVVPGFIDSHVHF 112 (579)
Q Consensus 42 ~~~~~~likn~~v~~~~~~~~~~~~v~I~~GkI~~Ig~~~~~~~--------~~~~~~~viD~~g~~V~PG~ID~H~H~ 112 (579)
....+++|.|+.|++..+. .+.+|-|+||||+.||....+.. ..+...++|.++|++++||-||.|+|+
T Consensus 64 ~~~~d~vitn~~i~d~~Gi--~KadiGikdG~I~giGkaGNPd~mdgV~~~~vig~~Teviageg~I~TagvIdthvHF 140 (180)
T d4ubpc1 64 ENVLDLLLTNALILDYTGI--YKADIGVKDGYIVGIGKGGNPDIMDGVTPNMIVGTATEVIAAEGKIVTALVLWEPKFF 140 (180)
T ss_dssp TTBCSEEEEEEEEEETTEE--EEEEEEEETTEEEEEECCBCTTTCTTCCTTCBCCTTCEEEECTTCEEEEEEEECGGGT
T ss_pred CCcceEEEeeEEEecCCCe--EEeeeeeecCEEEEeeccCCccccCCCCCCeEEcCCceEEecCCceEEEEEEeehhhc
Confidence 4567899999999986554 78899999999999997543321 125677999999999999999999997
|
| >d1m7ja2 b.92.1.6 (A:420-480) N-acyl-D-aminoacid amidohydrolase {Alcaligenes faecalis [TaxId: 511]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: D-aminoacylase domain: N-acyl-D-aminoacid amidohydrolase species: Alcaligenes faecalis [TaxId: 511]
Probab=98.02 E-value=2.4e-06 Score=60.32 Aligned_cols=40 Identities=30% Similarity=0.526 Sum_probs=30.8
Q ss_pred cccCCCcccEEEeCCCCCCChhhc-----cCCeEEEEEECCEEeC
Q 008063 539 SLSPGKIADFVILSTSSWEDFAAE-----VSASIEATYVSGVQAY 578 (579)
Q Consensus 539 ~I~~G~~ADlvvld~~~~~~~~~~-----~~~~v~~v~v~G~~v~ 578 (579)
+|+||+.|||||||.+...+.... ....+.+||+||++++
T Consensus 1 ri~~G~~ADlvvfDp~~i~d~~~~~~~~~~~~Gi~~v~VnG~~v~ 45 (61)
T d1m7ja2 1 QVQPGYYADLVVFDPATVADSATFEHPTERAAGIHSVYVNGAAVW 45 (61)
T ss_dssp SCCTTSBCCEEEECTTTCBCCCCSSSTTCCCBSEEEEEETTEEEE
T ss_pred CCCCCcCCCEEEECHHHccCcccccccccccceeEEEEECCEEEE
Confidence 589999999999998864422111 2558999999999986
|
| >d1m7ja3 c.1.9.11 (A:62-419) N-acyl-D-aminoacid amidohydrolase, catalytic domain {Alcaligenes faecalis [TaxId: 511]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: D-aminoacylase, catalytic domain domain: N-acyl-D-aminoacid amidohydrolase, catalytic domain species: Alcaligenes faecalis [TaxId: 511]
Probab=97.98 E-value=0.00016 Score=70.76 Aligned_cols=64 Identities=20% Similarity=0.076 Sum_probs=40.3
Q ss_pred HHHHHHCCCeeeecCCCCCCC----CCHHHHHHHHHcccCCCCCCCCCCCCCCCHHHHHHHHcHHHHHhcccCCccc
Q 008063 466 FQSLLANNALLALGSDWPVAD----INPLCAIRTAMKRIPPGWDNAWIPSERISLTDALIAHTLSAARACFLENDVG 538 (579)
Q Consensus 466 l~~l~~~Gi~v~~gsD~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~npA~~lgl~~~~G 538 (579)
+..+++.-- +++|||+.... +..+...-..+.+.. .++..||+++|++.+|..||+.+||.+ +|
T Consensus 291 v~~~l~~p~-~~igSDgga~~~~~hpr~~gtf~r~L~~~v-------Re~~~lsLeeAI~k~T~~pA~~~Gl~d-RG 358 (358)
T d1m7ja3 291 VQRILAFGP-TMIGSDGLPHDERPHPRLWGTFPRVLGHYS-------RDLGLFPLETAVWKMTGLTAAKFGLAE-RG 358 (358)
T ss_dssp HHHHHHSTT-EEECCCCCTTCSSCCTHHHHHHHHHHCCCC-------CCTCSSCHHHHHHTTTHHHHHHHTCTT-CS
T ss_pred HHHHHhCCC-ceEEcCcccCCCCcCCCCcccHHHHHHHHh-------cCCCcCCHHHHHHHHHHHHHHHhCCCC-CC
Confidence 344444333 57789975432 222333323344332 234569999999999999999999987 44
|
| >d2q09a1 b.92.1.10 (A:4-65,A:367-407) Probable 4-imidazolone-5-propanoate amidohydrolase GOS_1928421 {Environmental samples} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Imidazolonepropionase-like domain: Probable 4-imidazolone-5-propanoate amidohydrolase GOS 1928421 species: Environmental samples
Probab=97.86 E-value=4.8e-06 Score=64.43 Aligned_cols=50 Identities=14% Similarity=0.169 Sum_probs=39.2
Q ss_pred HhcccCCccccccCCCcccEEEeCCCCCCCh-hhccCCeEEEEEECCEEeC
Q 008063 529 RACFLENDVGSLSPGKIADFVILSTSSWEDF-AAEVSASIEATYVSGVQAY 578 (579)
Q Consensus 529 ~~lgl~~~~G~I~~G~~ADlvvld~~~~~~~-~~~~~~~v~~v~v~G~~v~ 578 (579)
....++.++|+|++||.|||+|||.+....+ -.+....+..||++|++|.
T Consensus 52 ~~~d~~gr~~tlevGk~ADlviwd~~~~~~L~Y~~G~n~i~~vi~~G~~V~ 102 (103)
T d2q09a1 52 HWQDMKGKLVTLRVGMLADFLVWNCGHPAELSYLIGVDQLVSRVVNGEETL 102 (103)
T ss_dssp TSEECTTCEEECCTTSBCCEEEESSSCTTHHHHSCSCCCEEEEEETTEECC
T ss_pred hhhhcccceEEecCCCccCEEEEcCCCHHHhhhhcCCCCceEEEECCEEee
Confidence 4456788899999999999999997755422 2233568999999999884
|
| >d1j6oa_ c.1.9.12 (A:) Hypothetical protein TM0667 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: TatD Mg-dependent DNase-like domain: Hypothetical protein TM0667 species: Thermotoga maritima [TaxId: 2336]
Probab=97.60 E-value=0.0003 Score=65.47 Aligned_cols=133 Identities=14% Similarity=0.149 Sum_probs=86.6
Q ss_pred HHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhcCCCCCCceEeeccCCChhhHHHHhhCCcEEEeccccccc
Q 008063 366 ESLLSMTMASDKSGLQVAIHAIGDRANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLASGTAARFGDQGIVASMQPQHLLD 445 (579)
Q Consensus 366 ~~l~~~~~~a~~~g~~i~iH~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~H~~~~~~~~~~~~~~~~i~~~~~p~~~~~ 445 (579)
+.+.+-++.|.++++|+.+|+.+.. +.+++.+.+ .... ..-.+.|+...+.+.++++.+.|..++..+.....
T Consensus 112 ~vF~~ql~lA~~~~lPviiH~r~a~--~~~~~il~~----~~~~-~~~~i~H~fsG~~~~~~~~l~~g~~is~~g~~~~~ 184 (260)
T d1j6oa_ 112 RVFVEQIELAGKLNLPLVVHIRDAY--SEAYEILRT----ESLP-EKRGVIHAFSSDYEWAKKFIDLGFLLGIGGPVTYP 184 (260)
T ss_dssp HHHHHHHHHHHHHTCCEEEEEESCH--HHHHHHHHH----SCCC-SSCEEETTCCSCHHHHHHHHHHTEEEEECGGGGCT
T ss_pred HHHHHHHHHHHhcCcceEEeeccch--HHHHHHHHh----hcCC-CCCeeeeccccCHHHHHHHHhCCCceeeccccccc
Confidence 4578899999999999999997543 344444433 2211 23378899999999999999999999988654432
Q ss_pred chhHHHHhhChhhhhhhhhhHHHHH-HCCC-eeeecCCCCCCCCCH----------HHHHHHHHcccCCCCCCCCCCCCC
Q 008063 446 DADSARKKLGVDRAERESYLFQSLL-ANNA-LLALGSDWPVADINP----------LCAIRTAMKRIPPGWDNAWIPSER 513 (579)
Q Consensus 446 ~~~~~~~~l~~~~~~~~~~~l~~l~-~~Gi-~v~~gsD~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~ 513 (579)
... .++.+. .-.. ++.+=||+|..++.+ ...+-..+. .-.+
T Consensus 185 ~~~----------------~~~~~v~~iPldrlllETD~P~l~p~~~~~~~n~P~~l~~v~~~iA-----------~~~~ 237 (260)
T d1j6oa_ 185 KNE----------------ALREVVKRVGLEYIVLETDCPFLPPQPFRGKRNEPKYLKYVVETIS-----------QVLG 237 (260)
T ss_dssp TCH----------------HHHHHHHHHCGGGEEECCCBTSCCCGGGTTSCCCGGGHHHHHHHHH-----------HHHT
T ss_pred hHH----------------HHHHHHHhcccceEEEecCCCCCCCcccCCCCCChHHHHHHHHHHH-----------HHhC
Confidence 111 111111 1122 478899998765432 222222222 1235
Q ss_pred CCHHHHHHHHcHHHHHhcc
Q 008063 514 ISLTDALIAHTLSAARACF 532 (579)
Q Consensus 514 ls~~~al~~~T~npA~~lg 532 (579)
++.+++.+..+.|.-++++
T Consensus 238 ~~~~ev~~~~~~N~~rlF~ 256 (260)
T d1j6oa_ 238 VPEAKVDEATTENARRIFL 256 (260)
T ss_dssp SCHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHH
Confidence 8999999999999888775
|
| >d2ooda1 b.92.1.4 (A:3-72,A:398-467) Guanine deaminase {Bradyrhizobium japonicum [TaxId: 375]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: SAH/MTA deaminase-like domain: Guanine deaminase species: Bradyrhizobium japonicum [TaxId: 375]
Probab=97.45 E-value=2e-05 Score=65.28 Aligned_cols=63 Identities=21% Similarity=0.357 Sum_probs=45.8
Q ss_pred HHHHHHHHcHHHHHhcccCCccccccCCCcccEEEeCCCCCC-----------------Chhhc----c-------CCeE
Q 008063 516 LTDALIAHTLSAARACFLENDVGSLSPGKIADFVILSTSSWE-----------------DFAAE----V-------SASI 567 (579)
Q Consensus 516 ~~~al~~~T~npA~~lgl~~~~G~I~~G~~ADlvvld~~~~~-----------------~~~~~----~-------~~~v 567 (579)
+.+.|+.. .-.|+.+++++++|.++|||.|||||+|.+... ..+++ . +..|
T Consensus 48 ~~~~l~~~-~pga~v~d~~d~lg~F~~GkEADfvVlD~~~tp~~~~r~~~~~~~~~~~~~~~~l~e~Lf~l~~lGDDR~I 126 (140)
T d2ooda1 48 PYEKIAAA-HPGVEITHIKDRIIVFEPGKEADFVALDPNGGQLAQPWHQSLIADGAGPRTVDEAASMLFAVMMVGDDRCV 126 (140)
T ss_dssp EHHHHHHH-STTCEEEEEEEEEEECCTTSBCCEEEECTTCSSTTHHHHHTTC--CCSCCSHHHHHHHHHHHHHHCCGGGE
T ss_pred CHHHHhhc-CCCceEEecCCceEeccCCCeecEEEECCCCChHHHhhhhhcccccccchhhhhHHHHHHHHhhccCCCce
Confidence 34444443 336799999999999999999999999955311 00111 1 5699
Q ss_pred EEEEECCEEeCC
Q 008063 568 EATYVSGVQAYP 579 (579)
Q Consensus 568 ~~v~v~G~~v~~ 579 (579)
..|||.|+.||.
T Consensus 127 ~~t~V~G~~v~~ 138 (140)
T d2ooda1 127 DETWVMGKRLYK 138 (140)
T ss_dssp EEEEETTEEEEE
T ss_pred EEEEECCEEEee
Confidence 999999999983
|
| >d1xrta1 b.92.1.3 (A:1-55,A:366-422) Two-domain dihydroorotase {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase) domain: Two-domain dihydroorotase species: Aquifex aeolicus [TaxId: 63363]
Probab=97.35 E-value=1.1e-05 Score=64.79 Aligned_cols=56 Identities=18% Similarity=0.232 Sum_probs=39.9
Q ss_pred cHHHHHhcccCCc--cccccCCCcccEEEeCCCC-CC-------------Chhhc-cCCeEEEEEECCEEeCC
Q 008063 524 TLSAARACFLEND--VGSLSPGKIADFVILSTSS-WE-------------DFAAE-VSASIEATYVSGVQAYP 579 (579)
Q Consensus 524 T~npA~~lgl~~~--~G~I~~G~~ADlvvld~~~-~~-------------~~~~~-~~~~v~~v~v~G~~v~~ 579 (579)
+.+||+.+..... .|.|++|+.|||+|+|.+- |. ++... ...+|..||++|++||.
T Consensus 39 ~~~~a~viD~~g~~~~~~l~~G~~ADl~i~Dp~~~~~v~~~~~~Sk~~nspf~g~~l~G~v~~T~~~G~~v~~ 111 (112)
T d1xrta1 39 LVPEAEIIDAKGLIVCPTLKLGSPADITIFDPNKEWILNEETNLSKSRNTPLWGKVLKGKVIYTIKDGKMVYK 111 (112)
T ss_dssp CCSSEEEEECTTSEEEECCCTTSBCCEEEEEEEEEEECSTTTCCSSCCCCTTTTCEEEEEEEEEEETTEEEEE
T ss_pred CcccceEEehhcccccceeecccceEEEEecCCccEEECHHHccCcCCCceecCCEEeeEEEEEEECCEEEEe
Confidence 3467787765543 5899999999999998642 21 12111 16789999999999984
|
| >d1o12a1 b.92.1.5 (A:1-43,A:332-364) N-acetylglucosamine-6-phosphate deacetylase, NagA {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: N-acetylglucosamine-6-phosphate deacetylase, NagA domain: N-acetylglucosamine-6-phosphate deacetylase, NagA species: Thermotoga maritima [TaxId: 2336]
Probab=97.03 E-value=0.0005 Score=47.21 Aligned_cols=52 Identities=21% Similarity=0.359 Sum_probs=40.5
Q ss_pred EEEEcCeEEeC-CCCCCeeeEEEEECCEEEEecChHHHHhhccCCCeEEeCCCCeeeccccccccccc
Q 008063 47 LVVTNGVIFTG-DDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHFI 113 (579)
Q Consensus 47 ~likn~~v~~~-~~~~~~~~~v~I~~GkI~~Ig~~~~~~~~~~~~~~viD~~g~~V~PG~ID~H~H~~ 113 (579)
+++.++.|+|| +|. ..++|.+++|||..|-.. +.. ...++||||+|.|.|-.
T Consensus 1 M~iE~VLIVDPidGE--yTGdvEf~e~kI~~I~k~---------ect----p~~ilMP~f~dg~~a~~ 53 (76)
T d1o12a1 1 MIVEKVLIVDPIDGE--FTGDVEIEEGKIVKVEKR---------ECI----PRGVLMPRIAEGTRADL 53 (76)
T ss_dssp CEEEEEEEEETTTEE--EEEEEEEETTEEEEEEEC---------CSC----CSSEEEECCSTTSBCCE
T ss_pred CceeeEEEEcCCCCc--EeeeEEecCcEEEEEEEe---------ccC----CCeEEcccccCCccccE
Confidence 36788999998 444 788999999999999642 111 34789999999999964
|
| >d2uz9a1 b.92.1.4 (A:8-75,A:389-451) Guanine deaminase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: SAH/MTA deaminase-like domain: Guanine deaminase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.92 E-value=0.0004 Score=56.86 Aligned_cols=46 Identities=24% Similarity=0.332 Sum_probs=34.2
Q ss_pred CCccccccCCCcccEEEeCCCCCC-------------Chhhc----c----CCeEEEEEECCEEeCC
Q 008063 534 ENDVGSLSPGKIADFVILSTSSWE-------------DFAAE----V----SASIEATYVSGVQAYP 579 (579)
Q Consensus 534 ~~~~G~I~~G~~ADlvvld~~~~~-------------~~~~~----~----~~~v~~v~v~G~~v~~ 579 (579)
++..|.+++||.||++++|.+... ..+++ . +..|..|||+|+.|.+
T Consensus 63 ~~~~g~FevGkeaD~ivID~~~~~~~~~~~~~~~~~~~~~~~l~~lv~~gddr~I~~v~V~G~~Vv~ 129 (131)
T d2uz9a1 63 HHEFFMFEVGKEFDAILINPKASDSPIDLFYGDFFGDISEAVIQKFLYLGDDRNIEEVYVGGKQVVP 129 (131)
T ss_dssp TTCEEECCTTSBCCEEEECTTCTTCSCCCCTHHHHSSSTTHHHHHHHHHCCGGGEEEEEETTEEEES
T ss_pred hccccccccCccccEEEEECCCccchhhhhccccccCcHHHHHHHHhhcCCCCcEeEEEECCEEeCC
Confidence 456999999999999999976421 11111 1 5689999999998853
|
| >d2q09a1 b.92.1.10 (A:4-65,A:367-407) Probable 4-imidazolone-5-propanoate amidohydrolase GOS_1928421 {Environmental samples} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Imidazolonepropionase-like domain: Probable 4-imidazolone-5-propanoate amidohydrolase GOS 1928421 species: Environmental samples
Probab=96.91 E-value=0.00038 Score=53.52 Aligned_cols=58 Identities=21% Similarity=0.237 Sum_probs=44.9
Q ss_pred cEEEEcCeEEeCCCC-----CCeeeEEEEECCEEEEecChHHHHhhccCCCeEEeCCCCeee--ccc
Q 008063 46 DLVVTNGVIFTGDDS-----LLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVV--PGF 105 (579)
Q Consensus 46 ~~likn~~v~~~~~~-----~~~~~~v~I~~GkI~~Ig~~~~~~~~~~~~~~viD~~g~~V~--PG~ 105 (579)
+.+++|+++-|++.. ..+++.|+|++|||.+|+|..+.+.. ....+.|++|+++. +|.
T Consensus 3 d~lw~n~~lATm~~~~~~yG~ie~~ai~v~~g~I~~vgp~~~lpa~--~~~~~~d~~gr~~tlevGk 67 (103)
T d2q09a1 3 ERVWLNVTPATLRSDLADYGLLEPHALGVHEGRIHALVPMQDLKGP--YPAHWQDMKGKLVTLRVGM 67 (103)
T ss_dssp SEEEEEEEEBCCCTTSSTTCBCSSEEEEEETTEEEEEEEGGGCC----CCTTSEECTTCEEECCTTS
T ss_pred ceeeecCEEEEecCCCCCcceeccceEEEeCCeEEEEEehhhCCcc--ccchhhhcccceEEecCCC
Confidence 578999999998544 23788999999999999999887653 34567899999754 554
|
| >d1kcxa1 b.92.1.3 (A:15-66,A:401-490) Dihydropyrimidinase related protein-1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase) domain: Dihydropyrimidinase related protein-1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.21 E-value=0.00038 Score=57.78 Aligned_cols=53 Identities=15% Similarity=0.114 Sum_probs=41.5
Q ss_pred HHHHhcccCCccccccCCCcccEEEeCCCC-CC-------------Chhhc-cCCeEEEEEECCEEeC
Q 008063 526 SAARACFLENDVGSLSPGKIADFVILSTSS-WE-------------DFAAE-VSASIEATYVSGVQAY 578 (579)
Q Consensus 526 npA~~lgl~~~~G~I~~G~~ADlvvld~~~-~~-------------~~~~~-~~~~v~~v~v~G~~v~ 578 (579)
++|+.++...+++.+.+|++|||+|+|.+. +. +++.. ...+|..||++|++||
T Consensus 39 ~~a~vIDa~G~~v~~~~G~dAdl~i~Dp~~~~~i~~~~~~sk~~~tpf~G~~~~G~v~~Ti~rG~~v~ 106 (142)
T d1kcxa1 39 GGVKTIEANGRMVIIAVGSDADVVIWDPDKMKTITAKSHKSTVEYNIFEGMECHGSPLVVISQGKIVF 106 (142)
T ss_dssp SSCEEEECTTCEEECCTTSBCCEEEEEEEEEEECCTTTCSSSSSCCTTTTCEEEEEEEEEEETTEEEE
T ss_pred ccceeechhhcceeecccccceEEEEeccceEEEcchhccccCCccCCcCCEEEEEEEEEEECCEEEE
Confidence 578888999889999999999999998652 11 22221 1568999999999997
|
| >d1o12a2 c.1.9.10 (A:44-331) N-acetylglucosamine-6-phosphate deacetylase, NagA, catalytic domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: N-acetylglucosamine-6-phosphate deacetylase, NagA, catalytic domain domain: N-acetylglucosamine-6-phosphate deacetylase, NagA, catalytic domain species: Thermotoga maritima [TaxId: 2336]
Probab=96.20 E-value=0.0017 Score=60.19 Aligned_cols=40 Identities=15% Similarity=0.071 Sum_probs=32.5
Q ss_pred CCCHHHHHHHHHcccCCCCCCCCCCCCCCCHHHHHHHHcHHHHHhcccCCccc
Q 008063 486 DINPLCAIRTAMKRIPPGWDNAWIPSERISLTDALIAHTLSAARACFLENDVG 538 (579)
Q Consensus 486 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~npA~~lgl~~~~G 538 (579)
...+...+..++.. .|||++|||+++|.|||++||+++ +|
T Consensus 249 ~~~l~~~~~~~v~~------------~Gls~~eal~~aT~n~A~~lgl~d-rG 288 (288)
T d1o12a2 249 TLFFSQAVKNFRKF------------TGCSITELAKVSSYNSCVELGLDD-RG 288 (288)
T ss_dssp CCCHHHHHHHHHHH------------HCCCHHHHHHHHTHHHHHHTTCTT-SS
T ss_pred hhhHHHHHHHHHHH------------cCCCHHHHHHHHHHHHHHHhCCCC-CC
Confidence 35677777777642 369999999999999999999987 55
|
| >d2dvta1 c.1.9.15 (A:1-325) Thermophilic reversible gamma-resorcylate decarboxylase {Rhizobium sp. MTP-10005 [TaxId: 267998]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: PP1699/LP2961-like domain: Thermophilic reversible gamma-resorcylate decarboxylase species: Rhizobium sp. MTP-10005 [TaxId: 267998]
Probab=95.93 E-value=0.045 Score=51.82 Aligned_cols=155 Identities=12% Similarity=0.117 Sum_probs=78.9
Q ss_pred CCHHHHHHHHHHHHHCCCeEEEEecchH--------------------HHHHHHHH----HHHHHHhcCCCCCCceEeec
Q 008063 363 MELESLLSMTMASDKSGLQVAIHAIGDR--------------------ANDLVLDM----YKSVVVTTGKRDQRFRIEHA 418 (579)
Q Consensus 363 ~~~~~l~~~~~~a~~~g~~i~iH~~g~~--------------------~~~~~~~~----~~~~~~~~~~~~~~~~i~H~ 418 (579)
.....+..+.+.+.++|+++.+|+.+.. ........ +..+...+| +.+..+.|+
T Consensus 142 ~~d~~~~pi~~~~~e~~lpv~iH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~r~P--~Lk~v~~H~ 219 (325)
T d2dvta1 142 YDLPQYRPFWGEVEKLDVPFYLHPRNPLPQDSRIYDGHPWLLGPTWAFAQETAVHALRLMASGLFDEHP--RLNIILGHM 219 (325)
T ss_dssp TTSGGGHHHHHHHHHHTCCEEEECCCCCGGGCGGGTTCGGGSGGGTHHHHHHHHHHHHHHHTTHHHHCT--TCCEEESGG
T ss_pred ccCcccchHHHHHhhCCceEEEecCCCCCcccccccccccccccccccchhhHHHhHHHHhcchhhhcc--ccceeeecc
Confidence 3455688899999999999999974211 00111111 112334444 678889997
Q ss_pred cCCChhhHHHHhhCCcEEEeccccccc--chhHHHHhhChh-hhhhhhhhHHHHHH-CCC-eeeecCCCCCCCCCHHHHH
Q 008063 419 QHLASGTAARFGDQGIVASMQPQHLLD--DADSARKKLGVD-RAERESYLFQSLLA-NNA-LLALGSDWPVADINPLCAI 493 (579)
Q Consensus 419 ~~~~~~~~~~~~~~~i~~~~~p~~~~~--~~~~~~~~l~~~-~~~~~~~~l~~l~~-~Gi-~v~~gsD~~~~~~~~~~~~ 493 (579)
...-+..+.++..........+..... ..+......... ........+..+++ .|. ++.+|||.|..... ..
T Consensus 220 gg~~~~~~~r~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~drilfGSD~P~~~~~---~~ 296 (325)
T d2dvta1 220 GEGLPYMMWRIDHRNAWVKLPPRYPAKRRFMDYFNENFHITTSGNFRTQTLIDAILEIGADRILFSTDWPFENID---HA 296 (325)
T ss_dssp GTTHHHHHHHHHHTTTTCCSCCSSSCSSCHHHHHHHHEEEECTTCCCHHHHHHHHTTTCGGGEECCCCTTTSCHH---HH
T ss_pred ccccchHHHHHHHhhhhhccccccccccchHHHhhccccccccCCcCHHHHHHHHHHhCCCeEEEeCCCCCCChH---hH
Confidence 654444445544332222211211110 001111100000 00001112344444 455 79999999864322 11
Q ss_pred HHHHcccCCCCCCCCCCCCCCCHHHHHHHHcHHHHHhcccC
Q 008063 494 RTAMKRIPPGWDNAWIPSERISLTDALIAHTLSAARACFLE 534 (579)
Q Consensus 494 ~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~npA~~lgl~ 534 (579)
...+.. .+++.++.=...-.|+++++||+
T Consensus 297 ~~~~~~------------~~l~~~~~~~Il~~NA~rl~~Ld 325 (325)
T d2dvta1 297 SDWFNA------------TSIAEADRVKIGRTNARRLFKLD 325 (325)
T ss_dssp HHHHHH------------SSSCHHHHHHHHTHHHHHHTTCC
T ss_pred HHHHHc------------CCCCHHHHHHHHhHHHHHHHCcC
Confidence 122221 24898888888889999999985
|
| >d2ftwa1 b.92.1.3 (A:7-59,A:394-490) Dihydropyrimidine amidohydrolase Pyd2 {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase) domain: Dihydropyrimidine amidohydrolase Pyd2 species: Dictyostelium discoideum [TaxId: 44689]
Probab=95.85 E-value=0.00072 Score=56.55 Aligned_cols=53 Identities=15% Similarity=0.114 Sum_probs=41.7
Q ss_pred HHHHhcccCCccccccCCCcccEEEeCCCC-CC-------------Chhhcc-CCeEEEEEECCEEeC
Q 008063 526 SAARACFLENDVGSLSPGKIADFVILSTSS-WE-------------DFAAEV-SASIEATYVSGVQAY 578 (579)
Q Consensus 526 npA~~lgl~~~~G~I~~G~~ADlvvld~~~-~~-------------~~~~~~-~~~v~~v~v~G~~v~ 578 (579)
++|+.++..++++.|.+|++|||+++|.+. +. +++... ...+..||++|++||
T Consensus 40 ~~~~iida~gk~v~i~~G~dad~~i~dp~~~~~i~~~~~~sk~~~spfeG~~~~G~v~~TivrG~iV~ 107 (150)
T d2ftwa1 40 EGIKVVDATDKLLLIDVGCDGDIVIWDPNQSKTISKDTHHHAVDFNIFEGIKVTGIAVTTIVAGNIVW 107 (150)
T ss_dssp SSCCEEECTTCEEECSTTSBCCEEEEEEEEEEECCTTTCCCSSSCCTTTTCEEEEEEEEEEETTEEEE
T ss_pred CccEEEecccceeeeecCccCceEEEecCceEEEeccccccccccccCcCCEEEEEEeEEEECCEEEE
Confidence 688999999989999999999999998652 11 122111 568999999999997
|
| >d1ra0a1 b.92.1.2 (A:4-55,A:376-426) Cytosine deaminase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Cytosine deaminase domain: Cytosine deaminase species: Escherichia coli [TaxId: 562]
Probab=95.62 E-value=0.0016 Score=49.77 Aligned_cols=53 Identities=19% Similarity=0.273 Sum_probs=40.6
Q ss_pred EEEEcCeEEeCCCCCCeeeEEEEECCEEEEecChHHHHhhccCCCeEEeCCCCeeecccc
Q 008063 47 LVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFI 106 (579)
Q Consensus 47 ~likn~~v~~~~~~~~~~~~v~I~~GkI~~Ig~~~~~~~~~~~~~~viD~~g~~V~PG~I 106 (579)
..|+|+++-.-+|. .+|.|+||+|..|.+..+.. ......+|+.|.+++|-+|
T Consensus 3 ~~I~NarL~gr~GL----~~I~I~~G~i~~I~pq~~~~---~~~~d~lDa~GgL~~p~~i 55 (103)
T d1ra0a1 3 QTIINARLPGEEGL----WQIHLQDGKISAIDAQSGVM---PITENSLDAEQGLVIPLII 55 (103)
T ss_dssp CEEEEEBCTTCCSE----EEEEEETTEEEEEEEESSCC---CCCTTEEECTTCEEESEEE
T ss_pred ceEEEEEeCCCCcE----EEEEecCCEEeeeecCCccc---cCCCcceeccCCcccCcEE
Confidence 36889998865553 38999999999999765422 2456789999999999444
|
| >d2qs8a1 b.92.1.9 (A:7-63,A:374-412) Xaa-Pro dipeptidase {Alteromonas macleodii [TaxId: 28108]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Zn-dependent arginine carboxypeptidase-like domain: Xaa-Pro dipeptidase species: Alteromonas macleodii [TaxId: 28108]
Probab=95.37 E-value=0.01 Score=45.31 Aligned_cols=39 Identities=21% Similarity=0.389 Sum_probs=34.4
Q ss_pred cccccCCCcccEEEeCCCCCCChhhccCCeEEEEEECCEEe
Q 008063 537 VGSLSPGKIADFVILSTSSWEDFAAEVSASIEATYVSGVQA 577 (579)
Q Consensus 537 ~G~I~~G~~ADlvvld~~~~~~~~~~~~~~v~~v~v~G~~v 577 (579)
+..|++|+.||++++++||++++..+. ++..|+++|+++
T Consensus 56 ~PGL~~g~~~d~~~~~~~P~~di~~~~--~v~~v~~~G~~~ 94 (96)
T d2qs8a1 56 LPSIESGKLADLIAVKGNPIEDISVLE--NVDVVIKDGLLY 94 (96)
T ss_dssp EESCCTTSBCCEEEESSCTTTCGGGGG--GEEEEEETTEEE
T ss_pred ccCccccCcccEEEEcCChhHHhHhhc--CccEEEECCEEe
Confidence 456999999999999999999887765 799999999975
|
| >d1gkra1 b.92.1.3 (A:1-54,A:380-451) L-hydantoinase {Arthrobacter aurescens [TaxId: 43663]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase) domain: L-hydantoinase species: Arthrobacter aurescens [TaxId: 43663]
Probab=95.26 E-value=0.0089 Score=48.22 Aligned_cols=41 Identities=24% Similarity=0.189 Sum_probs=30.5
Q ss_pred ccccCCCcccEEEeCCCC-CC-Chhhcc-------------CCeEEEEEECCEEeC
Q 008063 538 GSLSPGKIADFVILSTSS-WE-DFAAEV-------------SASIEATYVSGVQAY 578 (579)
Q Consensus 538 G~I~~G~~ADlvvld~~~-~~-~~~~~~-------------~~~v~~v~v~G~~v~ 578 (579)
-.|++|++|||+++|.+. +. +.+.+. ..+|..||++|++||
T Consensus 54 P~~~vG~DAD~~l~Dp~~~~~v~~~~~~sk~~~tpf~G~~~~G~v~~Ti~rG~~v~ 109 (126)
T d1gkra1 54 PTLQVGSDADLLILDLDIDTKVDASQFRSLHKYSPFDGMPVTGAPVLTMVRGTVVA 109 (126)
T ss_dssp ESCCTTSBCCEEEEESCCCEECCGGGCSSSCCCCTTTTCEECCEEEEEEETTEEEE
T ss_pred cceeecccchhheeccccceeccHHHHHhhhcccccCCcEEEeEEEEEEECCEEEE
Confidence 359999999999998764 11 222111 569999999999987
|
| >d1o12a1 b.92.1.5 (A:1-43,A:332-364) N-acetylglucosamine-6-phosphate deacetylase, NagA {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: N-acetylglucosamine-6-phosphate deacetylase, NagA domain: N-acetylglucosamine-6-phosphate deacetylase, NagA species: Thermotoga maritima [TaxId: 2336]
Probab=94.63 E-value=0.017 Score=39.49 Aligned_cols=31 Identities=23% Similarity=0.375 Sum_probs=27.7
Q ss_pred cccCCCcccEEEeCCCCCCChhhccCCeEEEEEECCEEeCC
Q 008063 539 SLSPGKIADFVILSTSSWEDFAAEVSASIEATYVSGVQAYP 579 (579)
Q Consensus 539 ~I~~G~~ADlvvld~~~~~~~~~~~~~~v~~v~v~G~~v~~ 579 (579)
.+..|+.||||++|.+. +|..|+..|..||+
T Consensus 44 ~f~dg~~a~~Vlld~~l----------~v~~tv~~g~~v~~ 74 (76)
T d1o12a1 44 RIAEGTRADLVLLDEDL----------NVVMTIKEGEVVFR 74 (76)
T ss_dssp CCSTTSBCCEEEECTTC----------CEEEEEETTEEEEE
T ss_pred cccCCccccEEEEcCCc----------eEEEEEeeccEEEe
Confidence 57889999999999665 89999999999984
|
| >d2icsa1 b.92.1.8 (A:4-54,A:322-371) Putative adenine deaminase EF0837 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Adenine deaminase domain: Putative adenine deaminase EF0837 species: Enterococcus faecalis [TaxId: 1351]
Probab=93.94 E-value=0.018 Score=43.70 Aligned_cols=49 Identities=24% Similarity=0.422 Sum_probs=37.5
Q ss_pred cEEEEcCeEEeCCCCCCeeeEEEEECCEEEEecChHHHHhhccCCCeEEeCCCCeeecc
Q 008063 46 DLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPG 104 (579)
Q Consensus 46 ~~likn~~v~~~~~~~~~~~~v~I~~GkI~~Ig~~~~~~~~~~~~~~viD~~g~~V~PG 104 (579)
+++|||++.+++ ...+|.|.+|||+++++.-. .++.+++|+.|++=+-|
T Consensus 3 d~~i~~~~~~~g-----~~~diai~~~ki~a~~~~~~-----~~a~~~~~L~~~~y~sG 51 (101)
T d2icsa1 3 DLLIKNGQTVNG-----MPVEIAIKEKKIAAVAATIS-----GSAKETIHLEPGTYVSA 51 (101)
T ss_dssp EEEEEEEECTTS-----CEEEEEEETTEEEEEESCCC-----CCEEEEEECCTTCEEEE
T ss_pred cEEEEcceecCC-----CeEEEEeccCeeeeeccccc-----ccchheEecCCceeeee
Confidence 689999999975 34499999999999996422 36678999998543334
|
| >d2icsa1 b.92.1.8 (A:4-54,A:322-371) Putative adenine deaminase EF0837 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Adenine deaminase domain: Putative adenine deaminase EF0837 species: Enterococcus faecalis [TaxId: 1351]
Probab=93.00 E-value=0.0039 Score=47.55 Aligned_cols=53 Identities=25% Similarity=0.208 Sum_probs=36.4
Q ss_pred cHHHHHhcccCCc---cccccCCCcccEEEeCCCC--C--CChhh--c---cCCeEEEEEECCEE
Q 008063 524 TLSAARACFLEND---VGSLSPGKIADFVILSTSS--W--EDFAA--E---VSASIEATYVSGVQ 576 (579)
Q Consensus 524 T~npA~~lgl~~~---~G~I~~G~~ADlvvld~~~--~--~~~~~--~---~~~~v~~v~v~G~~ 576 (579)
|..+++.+.|... .|+|++|+.||+.||+-.. + .|.+. + +...+..++++|++
T Consensus 34 ~~~a~~~~~L~~~~y~sGtL~vG~~ADiTIf~l~~g~~~~~Ds~G~~~~g~~~L~P~~tI~~G~v 98 (101)
T d2icsa1 34 SGSAKETIHLEPGTYVSATLEIGKDADLTIFTIQAEEKTLTDSNGLTRVAKEQIRPIKTIIGGQI 98 (101)
T ss_dssp CCCEEEEEECCTTCEEEESCCTTSBCCEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEEEETTEE
T ss_pred cccchheEecCCceeeeeEecCCCeeeEEEEEEecCceEEEeCCCCEEEeeEEEeEEEEEECCEE
Confidence 3467777777653 5999999999999997321 1 12111 0 14488999999994
|
| >d2ooda1 b.92.1.4 (A:3-72,A:398-467) Guanine deaminase {Bradyrhizobium japonicum [TaxId: 375]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: SAH/MTA deaminase-like domain: Guanine deaminase species: Bradyrhizobium japonicum [TaxId: 375]
Probab=92.42 E-value=0.043 Score=44.61 Aligned_cols=38 Identities=16% Similarity=0.441 Sum_probs=32.7
Q ss_pred eeeEEEEECCEEEEecChHHHHhhccCCCeEEeCCCCee
Q 008063 63 FADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVV 101 (579)
Q Consensus 63 ~~~~v~I~~GkI~~Ig~~~~~~~~~~~~~~viD~~g~~V 101 (579)
+++.++|+||+|+++|+..++... .++++++|+.++++
T Consensus 32 ~DG~llie~G~I~a~G~~~~l~~~-~pga~v~d~~d~lg 69 (140)
T d2ooda1 32 QDGLMVVTDGVIKAFGPYEKIAAA-HPGVEITHIKDRII 69 (140)
T ss_dssp EEEEEEEESSBEEEEEEHHHHHHH-STTCEEEEEEEEEE
T ss_pred cCcEEEEeCCEEEEecCHHHHhhc-CCCceEEecCCceE
Confidence 577899999999999999888765 46899999998764
|
| >d1o12a2 c.1.9.10 (A:44-331) N-acetylglucosamine-6-phosphate deacetylase, NagA, catalytic domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: N-acetylglucosamine-6-phosphate deacetylase, NagA, catalytic domain domain: N-acetylglucosamine-6-phosphate deacetylase, NagA, catalytic domain species: Thermotoga maritima [TaxId: 2336]
Probab=90.55 E-value=0.048 Score=49.70 Aligned_cols=17 Identities=29% Similarity=0.358 Sum_probs=13.6
Q ss_pred HHHHHHhcCccEEEeCC
Q 008063 252 ASNLALSRGVTTVVDFG 268 (579)
Q Consensus 252 ~~~~~~~~Git~v~~~~ 268 (579)
..+.+++.|+||+.++.
T Consensus 23 ~~~~~l~~GvTTv~~~~ 39 (288)
T d1o12a2 23 MEEFLYSQGVTTFLATT 39 (288)
T ss_dssp HHHHHHTTTEEEEEEEC
T ss_pred HHHHHHhCCeEEEcCCC
Confidence 45678999999998753
|
| >d3be7a1 b.92.1.9 (A:3-56,A:360-400) Zn-dependent arginine carboxypeptidase {Unidentified organism [TaxId: 32644]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Zn-dependent arginine carboxypeptidase-like domain: Zn-dependent arginine carboxypeptidase species: Unidentified organism [TaxId: 32644]
Probab=90.13 E-value=0.19 Score=37.54 Aligned_cols=65 Identities=14% Similarity=0.354 Sum_probs=51.3
Q ss_pred ccEEEEcCeEEeCCCCCCeeeEEEEECCEEEEecChHHHHhhccCCCeEEeCCCCeeecccc---ccccccccc
Q 008063 45 ADLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFI---DSHVHFIPG 115 (579)
Q Consensus 45 ~~~likn~~v~~~~~~~~~~~~v~I~~GkI~~Ig~~~~~~~~~~~~~~viD~~g~~V~PG~I---D~H~H~~~~ 115 (579)
.+++|+....++.........+++|++|+|.+|+... -.+++++...+++++|++- ++|.++..+
T Consensus 2 ~d~~~~pk~yL~~~~g~li~a~l~v~~G~i~ai~~~t------~~~A~il~l~d~illG~I~~Gk~ADlvlvdg 69 (95)
T d3be7a1 2 EDFLIKSKGYLDIQTGEIIKADLLIRNGKIAEIGKIN------TKDATVISIPDLILIPQIKEGFDADIVGVIE 69 (95)
T ss_dssp CCEEEEEEEEECTTTCCEECCEEEEETTEEEEEECCC------CSSSEEEEEEEEEEEESCCTTSBCCEEEESS
T ss_pred CceEecCcceeccccchhhhhhhhhhcCcHHHHHhhc------cChHHhcCCCCccccceeccCceeeEEEEcC
Confidence 3688999999998655557779999999999998632 2578999999988777775 777777654
|
| >d2a3la1 c.1.9.1 (A:212-839) AMP deaminase (AMPD), catalytic domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Adenosine/AMP deaminase domain: AMP deaminase (AMPD), catalytic domain species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=88.31 E-value=0.2 Score=51.00 Aligned_cols=125 Identities=14% Similarity=0.057 Sum_probs=84.6
Q ss_pred HCCCeEEEEecchHHHHHHHHHHHHHHHhcCCCCCCceEeeccCCCh--hhHHHHhhCCcEEEecccccccchhHHHHhh
Q 008063 377 KSGLQVAIHAIGDRANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLAS--GTAARFGDQGIVASMQPQHLLDDADSARKKL 454 (579)
Q Consensus 377 ~~g~~i~iH~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~H~~~~~~--~~~~~~~~~~i~~~~~p~~~~~~~~~~~~~l 454 (579)
..++++..||-+.........++- . ...|.|+..+.+ ....++...+|.+.+||.+|... ..
T Consensus 440 ~~~~~lrpH~GE~~~~~~l~~alL---~-------adrIgHGv~l~~~p~L~~l~~~~qI~le~cPlSN~~l------~~ 503 (628)
T d2a3la1 440 MTTITLRPHSGEAGDIDHLAATFL---T-------CHSIAHGINLRKSPVLQYLYYLAQIGLAMSPLSNNSL------FL 503 (628)
T ss_dssp CCCCEECCCCSSSSCTHHHHHHHH---H-------CSSCSCCGGGGGCHHHHHHHHHHTCCEEECHHHHTTT------TC
T ss_pred CCCeeeecccCCCCCHHHHHHHHh---c-------cccccceeEccCCHHHHHHHHhcCceEEECCCchhhc------cc
Confidence 356888899976655555555541 1 347788877654 45788888999999999998521 11
Q ss_pred ChhhhhhhhhhHHHHHHCCCeeeecCCCCC---CCCCHH-HHHHHHHcccCCCCCCCCCCCCCCCHHHHHHHHcHHHHHh
Q 008063 455 GVDRAERESYLFQSLLANNALLALGSDWPV---ADINPL-CAIRTAMKRIPPGWDNAWIPSERISLTDALIAHTLSAARA 530 (579)
Q Consensus 455 ~~~~~~~~~~~l~~l~~~Gi~v~~gsD~~~---~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~npA~~ 530 (579)
. -...|+..+++.|++|+++||.|. .+.+++ ++...+... .+|+..+..++| .|....
T Consensus 504 ~-----~~~hP~~~~~~~Gl~VsLsTDDPl~f~~t~epL~eEY~~aa~~------------~~Ls~~dl~elA-rNSV~~ 565 (628)
T d2a3la1 504 D-----YHRNPFPVFFLRGLNVSLSTDDPLQIHLTKEPLVEEYSIAASV------------WKLSACDLCEIA-RNSVYQ 565 (628)
T ss_dssp C-----STTCSHHHHHHTTCCEEECCBCHHHHCCSSSHHHHHHHHHHHH------------HTCCHHHHHHHH-HHHHHH
T ss_pred C-----hhhCcHHHHHHCCCeEEEcCCCccccCCCcchHHHHHHHHHHH------------hCCCHHHHHHHH-HHHHHH
Confidence 1 223589999999999999999763 223433 333333221 248999988887 688888
Q ss_pred cccCC
Q 008063 531 CFLEN 535 (579)
Q Consensus 531 lgl~~ 535 (579)
-|.++
T Consensus 566 S~f~~ 570 (628)
T d2a3la1 566 SGFSH 570 (628)
T ss_dssp SCCCH
T ss_pred hCCCH
Confidence 77753
|