Citrus Sinensis ID: 008067

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------58
MRVALASTIKQNPLLLTISSFLYRPPTKTVSFRNIFTVNTTRNLGFLRCKATMSEQEPPRPVVVQVRDKIELTDTETKIFSCLLNTLRHFNLETVLRVAGGWVRDKLLGKDCYDIDIALDNMMGSEFATKVAEYLSATGETAPSGFGVIPSNPDQSKHLETATMKLYDLWIDFVNLRCEDYSENSRIPTMRFGTAEEDAYRRDLTINSLFYNINTSSVEDLTGRGIADLKHGKIVTPLPPKATFLDDPLRVLRAIRFGARFDFILDEELKKAAASDEVKAALAAKISRERVGTEIDLMVSGNQPVKAMTHICGLTLFWIVFKLPLQVEPEVLEGCEMFCTAYLDAAWDLTQLIGSSTFNDDQRRLSQYAALFLPFRNTTYKDNKGKKIPVVNYTFRDSLKRKASDAETVMNIHRVLEKFLSLIPSLVSAEDVKVNDGQWSKELVDVPDASKLRVLTGFLLREIKKFWRVALLISTLLYPTHVDHTEDMLNQHFQLDSKRDLFVAAEKAITKLGLDEVWDLKPLVNGKDIMNVLQLKSGGPLVREWQQKLLAWQLAHPSGTAEECIDWMKETHLKRIKLQ
ccHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHcccccEEEEEccHHHHHccccccccEEEEEcccccHHHHHHHHHHHHHccccccccEEEcccccccccEEEEEEEEEccEEEEEEccccccccccccccccccccHHHHHHcccccHHHHccccccccEEccccccHHHHHcccccccccccccccccHHHHHHHHHHHHHccccccHHHHHHHHcHHHHHHHHccccHHHHHHHHHHHHccccHHHHHHHHHHccccHHHHcccccccHHHHHHHHHccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHcccccccEEcccccccccHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHcccccccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHcc
ccHHHHHHHcccccEEcccccccccccccccccccccccccccccccccccccccccccccccEEccccEEccHHHHHHHHHHHHHHHHHccccEEEEEccHHHHHHHcccccccEEEEccccHHHHHHHHHHHHHHccccccccEEEEEccccHccccEEEEEEEcccEEEEEEcccccccccccccEEccccHHHHHHHcccEHHHHHEccccccccccccccHHHHHcccEEccccccccccccHHHHHHHHHHHHHccccccHHHHHHHccHHHHHHHHHHccHHHHHHHHHHHHccccHHHHHHHHHHccccHHHccccHHHcccccccHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHcHHcccccccccccccccHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHccccccHHHHHHHHcccccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHcccc
MRVALAStikqnpllLTISsflyrpptktvsfrniftvnttrnlgflrckatmseqepprpvvvQVRDKIELTDTETKIFSCLLNTLRHFNLETVLRVAggwvrdkllgkdcyDIDIALDNMMGSEFATKVAEYLSatgetapsgfgvipsnpdqskhLETATMKLYDLWIDFVNLRcedysensriptmrfgtaeedayrrdltINSLfynintssvedltgrgiadlkhgkivtplppkatflddpLRVLRAIRFGARFDFILDEELKKAAASDEVKAALAAKISRERVGTEIDlmvsgnqpvkaMTHICGLTLFWIVFKlplqvepevlEGCEMFCTAYLDAAWDLTQligsstfnddQRRLSQYAALFlpfrnttykdnkgkkipvvnytfrdslkrkasdaETVMNIHRVLEKFLSLIpslvsaedvkvndgqwskelvdvpdasklrVLTGFLLREIKKFWRVALLISTllypthvdhteDMLNQHFQLDSKRDLFVAAEKAITKLgldevwdlkplvngkdimnvlqlksggpLVREWQQKLLAWQlahpsgtaeECIDWMKETHLKRIKLQ
mrvalastikqnpllltISSFlyrpptktvsfrniftvnttrnlGFLRCKatmseqepprpvvvQVRDKIELTDTETKIFSCLLNTLRHFNLETVLRvaggwvrdkllgKDCYDIDIALDNMMGSEFATKVAEYLSATGETAPSGFGVIPSNPDQSKHLETATMKLYDLWIDFVNLRCEdysensriptmrfgtaeedayRRDLTINSLFYNINTSSVEDLTGRGIAdlkhgkivtplppkatflddpLRVLRAIRFGARFDFILDEELKKAAASDEVKAALAakisrervgTEIDLMVSGNQPVKAMTHICGLTLFWIVFKLPLQVEPEVLEGCEMFCTAYLDAAWDLTQLIGSSTFNDDQRRLSQYAALFLpfrnttykdnkgkkipvvnytfrdslkrkasdaetVMNIHRVLEKFLSLIPSLVSaedvkvndgqwskelvdvpdasklRVLTGFLLREIKKFWRVALLISTLLYPTHVDHTEDMLNQHFQLDSKRDLFVAAEKAItklgldevwdLKPLVNGKDIMNVLQLKSGGPLVREWQQKLLAWQLAHPSGTAEECIDWMKETHLKRIKLQ
MRVALASTIKQNPLLLTISSFLYRPPTKTVSFRNIFTVNTTRNLGFLRCKATMSeqepprpvvvqvrDKIELTDTETKIFSCLLNTLRHFNLETVLRVAGGWVRDKLLGKDCYDIDIALDNMMGSEFATKVAEYLSATGETAPSGFGVIPSNPDQSKHLETATMKLYDLWIDFVNLRCEDYSENSRIPTMRFGTAEEDAYRRDLTINSLFYNINTSSVEDLTGRGIADLKHGKIVTPLPPKATFLDDPLRVLRAIRFGARFDFILDEELKKAAASDEVKAALAAKISRERVGTEIDLMVSGNQPVKAMTHICGLTLFWIVFKLPLQVEPEVLEGCEMFCTAYLDAAWDLTQLIGSSTFNDDQRRLSQYAALFLPFRNTTYKDNKGKKIPVVNYTFRDSLKRKASDAETVMNIHRVLEKFLSLIPSLVSAEDVKVNDGQWSKELVDVPDASKLRVLTGFLLREIKKFWRVALLISTLLYPTHVDHTEDMLNQHFQLDSKRDLFVAAEKAITKLGLDEVWDLKPLVNGKDIMNVLQLKSGGPLVREWQQKLLAWQLAHPSGTAEECIDWMKETHLKRIKLQ
*******TIKQNPLLLTISSFLYRPPTKTVSFRNIFTVNTTRNLGFLRCKAT********PVVVQVRDKIELTDTETKIFSCLLNTLRHFNLETVLRVAGGWVRDKLLGKDCYDIDIALDNMMGSEFATKVAEYLSATG********************ETATMKLYDLWIDFVNLRCEDYSENSRIPTMRFGTAEEDAYRRDLTINSLFYNINTSSVEDLTGRGIADLKHGKIVTPLPPKATFLDDPLRVLRAIRFGARFDFILDEELKKAAASDEVKAALAAKISRERVGTEIDLMVSGNQPVKAMTHICGLTLFWIVFKLPLQVEPEVLEGCEMFCTAYLDAAWDLTQLIGSSTFNDDQRRLSQYAALFLPFRNTTYKDNKGKKIPVVNYTFRDSLKRKASDAETVMNIHRVLEKFLSLIPSLVSAEDVKVNDGQWSKELVDVPDASKLRVLTGFLLREIKKFWRVALLISTLLYPTHVDHTEDMLNQHFQLDSKRDLFVAAEKAITKLGLDEVWDLKPLVNGKDIMNVLQLKSGGPLVREWQQKLLAWQLAHPSGTAEECIDWMKETH*******
*******TIKQNPLLLTI*******************************************************DTETKIFSCLLNTLRHFNLETVLRVAGGWVRDKLLGKDCYDIDIALDNMMGSEFATKVAEYLSATGETAPSGFGVIPSNPDQSKHLETATMKLYDLWIDFVNLRCEDYSENSRIPTMRFGTAEEDAYRRDLTINSLFYNINTSSVEDLTGRGIADLKHGKIVTPLPPKATFLDDPLRVLRAIRFGARFDFILDEELKKAAASDEVKAALAAKISRERVGTEIDLMVSGNQPVKAMTHICGLTLFWIVFKLPLQVEPEVLEGCEMFCTAYLDAAWDLTQLIGSSTFNDDQRRLSQYAALFLPFRNTTYKDNKGKKIPVVNYTFRDSLKRKASDAETVMNIHRVLEKFLSLIPSLVSAEDVKVNDGQWSKELVDVPDASKLRVLTGFLLREIKKFWRVALLISTLLYPTHVDHTEDMLNQHFQLDSKRDLFVAAEKAITKLGLDEVWDLKPLVNGKDIMNVLQLKSGGPLVREWQQKLLAWQLAHPSGTAEECIDWMKETHLK*****
MRVALASTIKQNPLLLTISSFLYRPPTKTVSFRNIFTVNTTRNLGFLRCKATMSEQEPPRPVVVQVRDKIELTDTETKIFSCLLNTLRHFNLETVLRVAGGWVRDKLLGKDCYDIDIALDNMMGSEFATKVAEYLSATGETAPSGFGVIPSNPDQSKHLETATMKLYDLWIDFVNLRCEDYSENSRIPTMRFGTAEEDAYRRDLTINSLFYNINTSSVEDLTGRGIADLKHGKIVTPLPPKATFLDDPLRVLRAIRFGARFDFILDEELKKAAASDEVKAALAAKISRERVGTEIDLMVSGNQPVKAMTHICGLTLFWIVFKLPLQVEPEVLEGCEMFCTAYLDAAWDLTQLIGSSTFNDDQRRLSQYAALFLPFRNTTYKDNKGKKIPVVNYTFRDSLKRKASDAETVMNIHRVLEKFLSLIPSLVSAEDVKVNDGQWSKELVDVPDASKLRVLTGFLLREIKKFWRVALLISTLLYPTHVDHTEDMLNQHFQLDSKRDLFVAAEKAITKLGLDEVWDLKPLVNGKDIMNVLQLKSGGPLVREWQQKLLAWQLAHPSGTAEECIDWMKETHLKRIKLQ
*RVALASTIKQNPLLLTISSFLYRPP**********************************PVVVQVRDKIELTDTETKIFSCLLNTLRHFNLETVLRVAGGWVRDKLLGKDCYDIDIALDNMMGSEFATKVAEYLSATGETAPSGFGVIPSNPDQSKHLETATMKLYDLWIDFVNLRCEDYSENSRIPTMRFGTAEEDAYRRDLTINSLFYNINTSSVEDLTGRGIADLKHGKIVTPLPPKATFLDDPLRVLRAIRFGARFDFILDEELKKAAASDEVKAALAAKISRERVGTEIDLMVSGNQPVKAMTHICGLTLFWIVFKLPLQVEPEVLEGCEMFCTAYLDAAWDLTQLIGSSTFNDDQRRLSQYAALFLPFRNTTYKDNKGKKIPVVNYTFRDSLKRKASDAETVMNIHRVLEKFLSLIPSLVSAEDVKVNDGQWSKELVDVPDASKLRVLTGFLLREIKKFWRVALLISTLLYPTHVDHTEDMLNQHFQLDSKRDLFVAAEKAITKLGLDEVWDLKPLVNGKDIMNVLQLKSGGPLVREWQQKLLAWQLAHPSGTAEECIDWMKETHLKRIK**
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MRVALASTIKQNPLLLTISSFLYRPPTKTVSFRNIFTVNTTRNLGFLRCKATMSEQEPPRPVVVQVRDKIELTDTETKIFSCLLNTLRHFNLETVLRVAGGWVRDKLLGKDCYDIDIALDNMMGSEFATKVAEYLSATGETAPSGFGVIPSNPDQSKHLETATMKLYDLWIDFVNLRCEDYSENSRIPTMRFGTAEEDAYRRDLTINSLFYNINTSSVEDLTGRGIADLKHGKIVTPLPPKATFLDDPLRVLRAIRFGARFDFILDEELKKAAASDEVKAALAAKISRERVGTEIDLMVSGNQPVKAMTHICGLTLFWIVFKLPLQVEPEVLEGCEMFCTAYLDAAWDLTQLIGSSTFNDDQRRLSQYAALFLPFRNTTYKDNKGKKIPVVNYTFRDSLKRKASDAETVMNIHRVLEKFLSLIPSLVSAEDVKVNDGQWSKELVDVPDASKLRVLTGFLLREIKKFWRVALLISTLLYPTHVDHTEDMLNQHFQLDSKRDLFVAAEKAITKLGLDEVWDLKPLVNGKDIMNVLQLKSGGPLVREWQQKLLAWQLAHPSGTAEECIDWMKETHLKRIKLQ
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query579 2.2.26 [Sep-21-2011]
Q9P4S5531 CCA tRNA nucleotidyltrans yes no 0.815 0.888 0.324 6e-70
P21269546 CCA tRNA nucleotidyltrans yes no 0.810 0.858 0.347 1e-69
Q9Y7U9484 Putative CCA tRNA nucleot yes no 0.804 0.962 0.330 2e-66
Q9UTQ0500 Putative CCA tRNA nucleot no no 0.811 0.94 0.322 3e-63
Q88W02407 CCA-adding enzyme OS=Lact yes no 0.338 0.481 0.302 8e-15
A8FEH9400 CCA-adding enzyme OS=Baci yes no 0.360 0.522 0.303 1e-13
Q03S97397 CCA-adding enzyme OS=Lact yes no 0.324 0.473 0.319 2e-13
Q1WU19404 CCA-adding enzyme OS=Lact yes no 0.364 0.522 0.285 3e-13
Q03Y57401 CCA-adding enzyme OS=Leuc yes no 0.322 0.466 0.315 4e-12
B2G721403 CCA-adding enzyme OS=Lact yes no 0.338 0.486 0.284 4e-12
>sp|Q9P4S5|CCA1_CANGA CCA tRNA nucleotidyltransferase, mitochondrial OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=CCA1 PE=1 SV=2 Back     alignment and function desciption
 Score =  265 bits (678), Expect = 6e-70,   Method: Compositional matrix adjust.
 Identities = 175/539 (32%), Positives = 275/539 (51%), Gaps = 67/539 (12%)

Query: 69  KIELTDTETKIFSCLLNTLRHFNL------ETVLRVAGGWVRDKLLGKDCYDIDIALDNM 122
           +I+LT+ ET+I + L +   H+N          LR+ GGWVRDKLLG+  +D+DIA++ M
Sbjct: 14  RIQLTEKETRICNLLKDYTAHYNSLHYGQEPLTLRITGGWVRDKLLGQGSHDLDIAINIM 73

Query: 123 MGSEFATKVAEYLSATGE---TAPSGFGVIPSNPDQSKHLETATMKLYDLWIDFVNLRCE 179
            G EFAT +  YL    +     P     I  NP++SKHLETAT KL+D+ +DFVNLR E
Sbjct: 74  SGEEFATGLNGYLLEHFDKYGVKPHSIHKIDKNPEKSKHLETATTKLFDVEVDFVNLRSE 133

Query: 180 DYSENSRIPTMRFGTAEEDAYRRDLTINSLFYNINTSSVEDLTGRGIADLKHGKIVTPLP 239
           +Y+E+SRIPT +FGT EEDA RRD T+N+LFYNI   +VED T RG  DL+ G + TPLP
Sbjct: 134 EYTEDSRIPTTQFGTPEEDALRRDATLNALFYNIQQDAVEDFTKRGWQDLQDGVLRTPLP 193

Query: 240 PKATFLDDPLRVLRAIRFGARFDFILDEELKKAAASDEVKAALAAKISRERVGTEIDLMV 299
            + TFLDDPLRVLR IRF +RF+F ++  + K     E+  A   KISRER+G E++ ++
Sbjct: 194 ARQTFLDDPLRVLRLIRFASRFNFNIEAGVLKEMHDPEINEAFNNKISRERIGVEMEKIL 253

Query: 300 SGNQPVKAM-----THICGLTLFW----IVFKLPLQVEPEVLEGCEMFCTA--------- 341
            G  P+  +     TH+  +   W     V +   +  P+  +  +++            
Sbjct: 254 VGPNPILGLKLIQRTHLENVIFLWHGDQSVIEYNRKNWPQTKDVEDIYKKGIFNHHLKNF 313

Query: 342 ------YLDAAWDLTQLIGSSTFNDDQRRLSQYAALFLPFRNTTY----KDNKGKKIPVV 391
                 +L     L Q I +   +  Q  L   A++ +P  +       K      +PV 
Sbjct: 314 IHHYKDFLSRYLKLRQAIETKDKSFQQNFL--LASILIPMADLKIIALPKKKLNNTLPVS 371

Query: 392 NYTFRDSLKRKASDAETVMNIHRVLEKFLSLIPSLVSAEDVKVNDGQWSKELVDVPDASK 451
               R+ LK   + +  V      +  + S++   + + D+K                  
Sbjct: 372 ESIVREGLKFNKASSIVVARCVENIAAYNSMVEKYLQSGDLK------------------ 413

Query: 452 LRVLTGFLLREIKKFWRVALLISTL-LYPTHVDHTEDMLNQHFQLDSKRDLFVAAEKAIT 510
            R   G  LRE++  W +   +S +  Y  ++   ++++N    +  K D F      I 
Sbjct: 414 -RSEVGTFLRELRGDWEIVHYVSLMDQYLKYISRKDNVVN----IIDKYDRFW---NYIQ 465

Query: 511 KLGLDEVWDLKPLVNGKDIMNVLQLKSGGPLVREWQQKLLAWQLAHPSGTAEECIDWMK 569
           +  L +   + P+++GK ++ +L+ K  GP + +   +++ WQ  HP GT +E I ++K
Sbjct: 466 EQNLQDSDKMVPIIDGKRMVKILETKP-GPWLGKINDEVILWQFDHPQGTEQELISFIK 523
This enzyme carries out synthesis of the tRNA CCA terminus without the direction of a template using the multiple accepting and donating subsites within its active site.
Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) (taxid: 284593)
EC: 2EC: .EC: 7EC: .EC: 7EC: .EC: 7EC: 2
>sp|P21269|CCA1_YEAST CCA tRNA nucleotidyltransferase, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CCA1 PE=1 SV=1 Back     alignment and function description
>sp|Q9Y7U9|CCA2_SCHPO Putative CCA tRNA nucleotidyltransferase 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC645.10 PE=3 SV=1 Back     alignment and function description
>sp|Q9UTQ0|CCA1_SCHPO Putative CCA tRNA nucleotidyltransferase 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC1093.04c PE=3 SV=2 Back     alignment and function description
>sp|Q88W02|CCA_LACPL CCA-adding enzyme OS=Lactobacillus plantarum (strain ATCC BAA-793 / NCIMB 8826 / WCFS1) GN=cca PE=3 SV=1 Back     alignment and function description
>sp|A8FEH9|CCA_BACP2 CCA-adding enzyme OS=Bacillus pumilus (strain SAFR-032) GN=cca PE=3 SV=1 Back     alignment and function description
>sp|Q03S97|CCA_LACBA CCA-adding enzyme OS=Lactobacillus brevis (strain ATCC 367 / JCM 1170) GN=cca PE=3 SV=1 Back     alignment and function description
>sp|Q1WU19|CCA_LACS1 CCA-adding enzyme OS=Lactobacillus salivarius (strain UCC118) GN=cca PE=3 SV=1 Back     alignment and function description
>sp|Q03Y57|CCA_LEUMM CCA-adding enzyme OS=Leuconostoc mesenteroides subsp. mesenteroides (strain ATCC 8293 / NCDO 523) GN=cca PE=3 SV=1 Back     alignment and function description
>sp|B2G721|CCA_LACRJ CCA-adding enzyme OS=Lactobacillus reuteri (strain JCM 1112) GN=cca PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query579
255586471577 poly(A) polymerase, putative [Ricinus co 0.987 0.991 0.696 0.0
224135935528 predicted protein [Populus trichocarpa] 0.910 0.998 0.731 0.0
449446353577 PREDICTED: CCA tRNA nucleotidyltransfera 0.960 0.963 0.680 0.0
449528369577 PREDICTED: CCA tRNA nucleotidyltransfera 0.922 0.925 0.7 0.0
359493248564 PREDICTED: CCA tRNA nucleotidyltransfera 0.946 0.971 0.665 0.0
296081108519 unnamed protein product [Vitis vinifera] 0.887 0.990 0.700 0.0
356576137575 PREDICTED: CCA tRNA nucleotidyltransfera 0.877 0.883 0.692 0.0
1139585560 tRNA nucleotidyltransferase [Lupinus alb 0.842 0.871 0.682 0.0
297845288603 hypothetical protein ARALYDRAFT_335508 [ 0.967 0.928 0.572 0.0
15219925605 polynucleotide adenylyltransferase-like 0.887 0.849 0.598 1e-178
>gi|255586471|ref|XP_002533879.1| poly(A) polymerase, putative [Ricinus communis] gi|223526180|gb|EEF28510.1| poly(A) polymerase, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  811 bits (2094), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 407/584 (69%), Positives = 473/584 (80%), Gaps = 12/584 (2%)

Query: 1   MRVALASTIKQNPLLLTISSFLYRPPTKTVSFRNIFTVNTTRNL-GFLR----CKATMSE 55
           MR  L + I   P+ L +   L R  T   +FRN F   T R L  FLR    C+A M  
Sbjct: 1   MRPYLNAAINLRPIQLLLPP-LLRSSTSAFAFRN-FRPETPRYLHSFLRRRFSCRA-MGT 57

Query: 56  QEPPRPVVVQVRDKIELTDTETKIFSCLLNTLRHFNLETVLRVAGGWVRDKLLGKDCYDI 115
             P    V+QV+DKIELT+ E KIF  LLNTLRHFNL+T LRVAGGWVRDKLLGKDCYDI
Sbjct: 58  STPQ--AVIQVKDKIELTEIEKKIFDRLLNTLRHFNLQTQLRVAGGWVRDKLLGKDCYDI 115

Query: 116 DIALDNMMGSEFATKVAEYLSATGETAPSGFGVIPSNPDQSKHLETATMKLYDLWIDFVN 175
           DIA+DNM+GSEF  KV EYL +TGE    G G+IP NPDQSKHLETA M+L+DLWIDFVN
Sbjct: 116 DIAIDNMLGSEFVDKVREYLLSTGEEV-GGLGIIPRNPDQSKHLETARMRLFDLWIDFVN 174

Query: 176 LRCEDYSENSRIPTMRFGTAEEDAYRRDLTINSLFYNINTSSVEDLTGRGIADLKHGKIV 235
           LRCEDY+E+SRIPTM+FGTAEEDA+RRDLTINSLFYNINTSSVEDLT RGI DLK GKIV
Sbjct: 175 LRCEDYTEDSRIPTMKFGTAEEDAFRRDLTINSLFYNINTSSVEDLTERGIEDLKFGKIV 234

Query: 236 TPLPPKATFLDDPLRVLRAIRFGARFDFILDEELKKAAASDEVKAALAAKISRERVGTEI 295
           TPLPPKATFLDDPLRVLRAIRFGARF FILDEELK+AAA D+VK ALAAKIS+ER+G EI
Sbjct: 235 TPLPPKATFLDDPLRVLRAIRFGARFGFILDEELKEAAACDDVKNALAAKISKERIGNEI 294

Query: 296 DLMVSGNQPVKAMTHICGLTLFWIVFKLPLQVEPEVLEGCEMFCTAYLDAAWDLTQLIGS 355
           DLM+SGNQPVKAMT+I  LTLFWI+F LP +VEP V EGC   C AYLDA W+L Q I S
Sbjct: 295 DLMLSGNQPVKAMTYIGDLTLFWIIFGLPPKVEPAVSEGCHKLCIAYLDATWNLIQSIRS 354

Query: 356 STFNDDQRRLSQYAALFLPFRNTTYKDNKGKKIPVVNYTFRDSLKRKASDAETVMNIHRV 415
           S F D+QRRLS YAALFLPFRN  Y + KGK +PVVN+ F+DSLK+KASD+ETVM IH+ 
Sbjct: 355 SFFTDEQRRLSLYAALFLPFRNIIYIE-KGKNVPVVNFIFKDSLKQKASDSETVMKIHKS 413

Query: 416 LEKFLSLIPSLVSAEDVKVNDGQWSKELVDVPDASKLRVLTGFLLREIKKFWRVALLIST 475
           LEKFL++IP L S +D +  +  W+ EL+DVP ++KLRVLTGFLLREIK FWRVALLIST
Sbjct: 414 LEKFLNIIPLLTSDDDTQPAEVDWALELIDVPFSAKLRVLTGFLLREIKDFWRVALLIST 473

Query: 476 LLYPTHVDHTEDMLNQHFQLDSKRDLFVAAEKAITKLGLDEVWDLKPLVNGKDIMNVLQL 535
           ++YP  +D T+  L++ F+LD +++LF   E AITK GL+++WD+KPLVNGK+IM+VLQL
Sbjct: 474 MIYPADIDSTQSFLDKQFELDKRKELFKTVEDAITKQGLEKIWDVKPLVNGKEIMSVLQL 533

Query: 536 KSGGPLVREWQQKLLAWQLAHPSGTAEECIDWMKETHLKRIKLQ 579
           KSGGPLVREWQQKLLAWQLAHP+GTAEEC+DWMKETHLKR +++
Sbjct: 534 KSGGPLVREWQQKLLAWQLAHPTGTAEECLDWMKETHLKRARIE 577

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224135935|ref|XP_002327340.1| predicted protein [Populus trichocarpa] gi|222835710|gb|EEE74145.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449446353|ref|XP_004140936.1| PREDICTED: CCA tRNA nucleotidyltransferase, mitochondrial-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449528369|ref|XP_004171177.1| PREDICTED: CCA tRNA nucleotidyltransferase, mitochondrial-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|359493248|ref|XP_002266551.2| PREDICTED: CCA tRNA nucleotidyltransferase, mitochondrial [Vitis vinifera] Back     alignment and taxonomy information
>gi|296081108|emb|CBI18302.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356576137|ref|XP_003556190.1| PREDICTED: CCA tRNA nucleotidyltransferase, mitochondrial-like [Glycine max] Back     alignment and taxonomy information
>gi|1139585|gb|AAB03077.1| tRNA nucleotidyltransferase [Lupinus albus] Back     alignment and taxonomy information
>gi|297845288|ref|XP_002890525.1| hypothetical protein ARALYDRAFT_335508 [Arabidopsis lyrata subsp. lyrata] gi|297336367|gb|EFH66784.1| hypothetical protein ARALYDRAFT_335508 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|15219925|ref|NP_173680.1| polynucleotide adenylyltransferase-like protein [Arabidopsis thaliana] gi|13877577|gb|AAK43866.1|AF370489_1 tRNA adenylyltransferase-like protein [Arabidopsis thaliana] gi|23198306|gb|AAN15680.1| tRNA adenylyltransferase-like protein [Arabidopsis thaliana] gi|332192145|gb|AEE30266.1| polynucleotide adenylyltransferase-like protein [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query579
TAIR|locus:2199675605 AT1G22660 [Arabidopsis thalian 0.880 0.842 0.604 2.1e-164
DICTYBASE|DDB_G0293504558 DDB_G0293504 "tRNA nucleotidyl 0.829 0.860 0.380 8.5e-81
POMBASE|SPCC645.10484 SPCC645.10 "ATP(CTP) tRNA nucl 0.573 0.685 0.377 1.1e-66
ASPGD|ASPL0000066964605 AN10924 [Emericella nidulans ( 0.640 0.613 0.391 2e-65
SGD|S000000970546 CCA1 "ATP (CTP):tRNA-specific 0.849 0.901 0.349 4.7e-64
CGD|CAL0004347547 orf19.4705 [Candida albicans ( 0.848 0.897 0.334 2.6e-63
POMBASE|SPAC1093.04c500 SPAC1093.04c "tRNA nucleotidyl 0.625 0.724 0.350 1.1e-60
GENEDB_PFALCIPARUM|PF11_0212 791 PF11_0212 "hypothetical protei 0.407 0.298 0.468 7.7e-58
UNIPROTKB|Q8IIG2 791 PF11_0212 "tRNA nucleotidyltra 0.407 0.298 0.468 7.7e-58
DICTYBASE|DDB_G0271378542 DDB_G0271378 [Dictyostelium di 0.556 0.594 0.294 6.4e-33
TAIR|locus:2199675 AT1G22660 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1600 (568.3 bits), Expect = 2.1e-164, P = 2.1e-164
 Identities = 318/526 (60%), Positives = 395/526 (75%)

Query:    68 DKIELTDTETKIFSCLLNTLRHFNLETVLRVAGGWVRDKLLGKDCYDIDIALDNMMGSEF 127
             + IELTD E KIF  LL+TLR+ NL+T LRVAGGWVRDKLLGK+  DIDIA+DNM GSEF
Sbjct:    82 ENIELTDKERKIFDRLLSTLRYCNLDTQLRVAGGWVRDKLLGKESDDIDIAIDNMSGSEF 141

Query:   128 ATKVAEYLSATGETAPSGFGVIPSNPDQSKHLETATMKLYDLWIDFVNLRCEDYSENSRI 187
               K  EYLS+  E    G  VI  NPDQSKHLETA +++YD WIDFVNLR E+Y+ENSRI
Sbjct:   142 LDKFKEYLSSRDEEV-QGDTVIERNPDQSKHLETAKLRIYDQWIDFVNLRSEEYTENSRI 200

Query:   188 PTMRFGTAEEDAYRRDLTINSLFYNINTSSVEDLTGRGIADLKHGKIVTPLPPKATFLDD 247
             PTM+FGTA++DA+RRDLTINSLFYNIN+ +VEDLT RGI DLK GKIVTPLP KATFLDD
Sbjct:   201 PTMKFGTAKDDAFRRDLTINSLFYNINSGAVEDLTERGIDDLKSGKIVTPLPAKATFLDD 260

Query:   248 PLRVLRAIRFGARFDFILDEELKKAAASDEVKAALAAKISRERVGTEIDLMVSGNQPVKA 307
             PLRVLRA+RFGARF F LDEELK+AA+S+EV+ AL  KISRER+G EIDLM+SGN PV A
Sbjct:   261 PLRVLRAVRFGARFGFTLDEELKEAASSEEVRVALGEKISRERIGNEIDLMISGNGPVSA 320

Query:   308 MTHICGLTLFWIVFKLPLQVEPEVLEGCEMFCTAYLDAAWDLTQLIGSSTFNDDQRRLSQ 367
             +T++  L LF +VF LP   EP   E C     +YL+A W L +      F+ +QRRL+ 
Sbjct:   321 VTYLSDLKLFSVVFALPSSAEPSPPENCGSLSQSYLEAMWSLLKTPRPGKFSGEQRRLAL 380

Query:   368 YAALFLPFRNTTYKDNKGKKIPVVNYTFRDSLKRKASDAETVMNIHRVLEKFLSLIPSLV 427
             YAA+FLPFR T YKD KGK IPVVN+ F+ S+KRK SDAETVMNIH+  E+F SLIPSL 
Sbjct:   381 YAAMFLPFRKTVYKDTKGKSIPVVNHIFKFSMKRKTSDAETVMNIHQTTERFRSLIPSLE 440

Query:   428 SAEDVKVNDGQWSKELVD-----------VPDASKLRVLTGFLLREIKKFWRVALLISTL 476
               +DV++++  W+ ++++           +P  SK+RVLTGFLLR+IK FWRV+LL S L
Sbjct:   441 VKKDVELDELTWAADILEHWKSITLNDPVIPATSKIRVLTGFLLRDIKDFWRVSLLTSLL 500

Query:   477 LYPTHVDHTEDM--LNQ-HFQLDSKRDLFVAAEKAITKLGLDEVWDLKPLVNGKDIMNVL 533
             L  T VD + D   + Q  FQL+  R+ ++  E  I +LGLD++WD KPLVNG++IM + 
Sbjct:   501 LSAT-VDGSNDHQDIGQLDFQLERMRETYLTVEATIHELGLDKIWDAKPLVNGREIMQIA 559

Query:   534 QLKSGGPLVREWQQKLLAWQLAHPSGTAEECIDWMKETHLKRIKLQ 579
             +LK G  L+REWQQKLL WQLA+P+GTAEEC +WM++   KR +++
Sbjct:   560 ELKGGSRLIREWQQKLLTWQLAYPNGTAEECKEWMRDIKAKRQRIE 605
GO:0003723 "RNA binding" evidence=IEA
GO:0004810 "tRNA adenylyltransferase activity" evidence=ISS
GO:0006396 "RNA processing" evidence=IEA
GO:0008033 "tRNA processing" evidence=ISS
GO:0009507 "chloroplast" evidence=ISM
GO:0016779 "nucleotidyltransferase activity" evidence=IEA
GO:0005739 "mitochondrion" evidence=IDA
GO:0009630 "gravitropism" evidence=RCA
DICTYBASE|DDB_G0293504 DDB_G0293504 "tRNA nucleotidyltransferase" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
POMBASE|SPCC645.10 SPCC645.10 "ATP(CTP) tRNA nucleotidyltransferase (predicted)" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
ASPGD|ASPL0000066964 AN10924 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
SGD|S000000970 CCA1 "ATP (CTP):tRNA-specific tRNA nucleotidyltransferase" [Saccharomyces cerevisiae (taxid:4932)] Back     alignment and assigned GO terms
CGD|CAL0004347 orf19.4705 [Candida albicans (taxid:5476)] Back     alignment and assigned GO terms
POMBASE|SPAC1093.04c SPAC1093.04c "tRNA nucleotidyltransferase (predicted)" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
GENEDB_PFALCIPARUM|PF11_0212 PF11_0212 "hypothetical protein" [Plasmodium falciparum (taxid:5833)] Back     alignment and assigned GO terms
UNIPROTKB|Q8IIG2 PF11_0212 "tRNA nucleotidyltransferase, putative" [Plasmodium falciparum 3D7 (taxid:36329)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0271378 DDB_G0271378 [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9P4S5CCA1_CANGA2, ., 7, ., 7, ., 7, 20.32460.81510.8888yesno
Q9Y7U9CCA2_SCHPO2, ., 7, ., 7, ., 7, 20.33000.80480.9628yesno
P21269CCA1_YEAST2, ., 7, ., 7, ., 7, 20.34780.81000.8589yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
4th Layer2.7.7.21LOW CONFIDENCE prediction!
3rd Layer2.7.70.766
4th Layer2.7.7.250.824

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query579
COG0617412 COG0617, PcnB, tRNA nucleotidyltransferase/poly(A) 1e-43
cd05398139 cd05398, NT_ClassII-CCAase, Nucleotidyltransferase 6e-39
pfam01743126 pfam01743, PolyA_pol, Poly A polymerase head domai 6e-33
TIGR02692466 TIGR02692, tRNA_CCA_actino, tRNA adenylyltransfera 1e-20
TIGR01942410 TIGR01942, pcnB, poly(A) polymerase 2e-19
PRK13299394 PRK13299, PRK13299, tRNA CCA-pyrophosphorylase; Pr 1e-17
PRK11623472 PRK11623, pcnB, poly(A) polymerase I; Provisional 2e-16
PRK10885409 PRK10885, cca, multifunctional tRNA nucleotidyl tr 6e-11
PRK13298417 PRK13298, PRK13298, tRNA CCA-pyrophosphorylase; Pr 1e-08
PRK13296360 PRK13296, PRK13296, tRNA CCA-pyrophosphorylase; Pr 2e-05
PRK13297364 PRK13297, PRK13297, tRNA CCA-pyrophosphorylase; Pr 8e-04
>gnl|CDD|223690 COG0617, PcnB, tRNA nucleotidyltransferase/poly(A) polymerase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information 
 Score =  160 bits (406), Expect = 1e-43
 Identities = 104/466 (22%), Positives = 165/466 (35%), Gaps = 81/466 (17%)

Query: 96  LRVAGGWVRDKLLGKDCYDIDIALDNMMGSEFATKVAEYLSATGETAPSGFGVIPSNPDQ 155
             + GG VRD LLG+   D+DIA +     E   K+       G      FG + + P  
Sbjct: 25  AYLVGGAVRDLLLGRPPKDVDIATNAT--PEEVKKLFRNTRPVGR----KFGTV-TVPFN 77

Query: 156 SKHLETATMKLYDLWIDFVNLRCEDYSENSRI-PTMRFGTAEEDAYRRDLTINSLFYNIN 214
            + +E  T             R E Y  N R  P +  GT EED  RRD TIN+L Y+  
Sbjct: 78  GEIIEVTT------------FRKEGYGYNGRPLPVVFPGTLEEDLKRRDFTINALAYDPE 125

Query: 215 TSSVEDLTGRGIADLKHGKIVTPLPPKATFLDDPLRVLRAIRFGARFDFILDEELKKAAA 274
              + D  G G+ DL++  +         F +DPLR+LRA RF AR  F ++ E ++A  
Sbjct: 126 DGEIIDPFG-GLKDLENRVLRHIGDASERFREDPLRILRAARFAARLGFTIEPETEEAIR 184

Query: 275 SDEVKAALAAKISRERVGTEIDLMVSGNQPVKAMTHICGLTLFWIVFKLPLQVEPEVLEG 334
                A L AKISRER+  E+  ++    P +A+  +       I+F   L     V + 
Sbjct: 185 L---MAPLLAKISRERLWDELKKLLLSPNPREALQLLREYGALKILFPE-LDKLFGVPKL 240

Query: 335 CEMFCTAYLDAAWDLTQLIGSSTFNDDQRRLSQYAALFLPFRNTTYKDNKGKKIPVVNYT 394
                   L        L+  +         +    L L          KGK I      
Sbjct: 241 LLALREIELLLHNTDELLLALAALLPAFLLAAATLPLLL---------RKGKTI------ 285

Query: 395 FRDSLKRKASDAETVMNIHRVLEKFLSLIPSLVSAEDVKVNDGQWSKELVDVPDASKLRV 454
                +    D      ++ +L++ L              N   + K LV+         
Sbjct: 286 -AKKRRELKHDEAAAKAVNDLLKRLLRP------------NYLGYLKRLVE--------- 323

Query: 455 LTGFLLREIKKFWRVALLISTLLYPTHVDHTEDMLNQHFQLDSKRDLFVAAEKAITKLGL 514
                  E+++ W  A  +               L +     +  +L +           
Sbjct: 324 -------EVREIWHEAGELLPRTGKRARK-----LLRLLAFRAALELLILGRDLG----- 366

Query: 515 DEVWDLKPLVNGKDIMNVLQLKSGGPLVREWQQKLLAWQLAHPSGT 560
            E    KP     +I+ +L+ K    +++  ++  L  +L     T
Sbjct: 367 -EAAGYKPGPKLGEILQLLEEKPLKGVIKNLKE-ALIERLEREELT 410

Length = 412
>gnl|CDD|143388 cd05398, NT_ClassII-CCAase, Nucleotidyltransferase (NT) domain of ClassII CCA-adding enzymes Back     alignment and domain information
>gnl|CDD|216675 pfam01743, PolyA_pol, Poly A polymerase head domain Back     alignment and domain information
>gnl|CDD|131739 TIGR02692, tRNA_CCA_actino, tRNA adenylyltransferase Back     alignment and domain information
>gnl|CDD|130997 TIGR01942, pcnB, poly(A) polymerase Back     alignment and domain information
>gnl|CDD|237339 PRK13299, PRK13299, tRNA CCA-pyrophosphorylase; Provisional Back     alignment and domain information
>gnl|CDD|236939 PRK11623, pcnB, poly(A) polymerase I; Provisional Back     alignment and domain information
>gnl|CDD|182810 PRK10885, cca, multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase; Reviewed Back     alignment and domain information
>gnl|CDD|237338 PRK13298, PRK13298, tRNA CCA-pyrophosphorylase; Provisional Back     alignment and domain information
>gnl|CDD|106256 PRK13296, PRK13296, tRNA CCA-pyrophosphorylase; Provisional Back     alignment and domain information
>gnl|CDD|139469 PRK13297, PRK13297, tRNA CCA-pyrophosphorylase; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 579
TIGR02692466 tRNA_CCA_actino tRNA adenylyltransferase. The enzy 100.0
PRK13299394 tRNA CCA-pyrophosphorylase; Provisional 100.0
KOG2159416 consensus tRNA nucleotidyltransferase/poly(A) poly 100.0
PRK13298417 tRNA CCA-pyrophosphorylase; Provisional 100.0
PRK10885409 cca multifunctional tRNA nucleotidyl transferase/2 100.0
COG0617412 PcnB tRNA nucleotidyltransferase/poly(A) polymeras 100.0
PRK11623472 pcnB poly(A) polymerase I; Provisional 100.0
TIGR01942410 pcnB poly(A) polymerase. This model describes the 100.0
PRK13297364 tRNA CCA-pyrophosphorylase; Provisional 100.0
PRK13296360 tRNA CCA-pyrophosphorylase; Provisional 100.0
cd05398139 NT_ClassII-CCAase Nucleotidyltransferase (NT) doma 100.0
PF01743126 PolyA_pol: Poly A polymerase head domain; InterPro 99.97
PRK00227693 glnD PII uridylyl-transferase; Provisional 99.86
PRK03381 774 PII uridylyl-transferase; Provisional 99.86
PRK00275 895 glnD PII uridylyl-transferase; Provisional 99.85
PRK03059 856 PII uridylyl-transferase; Provisional 99.84
TIGR01693 850 UTase_glnD [Protein-PII] uridylyltransferase. This 99.83
PRK05092 931 PII uridylyl-transferase; Provisional 99.81
PRK01759 854 glnD PII uridylyl-transferase; Provisional 99.8
PHA01806200 hypothetical protein 99.77
PRK05007 884 PII uridylyl-transferase; Provisional 99.73
PRK04374 869 PII uridylyl-transferase; Provisional 99.68
COG2844 867 GlnD UTP:GlnB (protein PII) uridylyltransferase [P 99.66
PF13735149 tRNA_NucTran2_2: tRNA nucleotidyltransferase domai 99.23
PF1262764 PolyA_pol_RNAbd: Probable RNA and SrmB- binding si 99.01
cd05402114 NT_PAP_TUTase Nucleotidyltransferase (NT) domain o 95.06
cd07749156 NT_Pol-beta-like_1 Nucleotidyltransferase (NT) dom 93.92
PF06042163 DUF925: Bacterial protein of unknown function (DUF 93.74
TIGR03401228 cyanamide_fam HD domain protein, cyanamide hydrata 92.07
TIGR00295164 conserved hypothetical protein TIGR00295. This set 91.43
cd0539749 NT_Pol-beta-like Nucleotidyltransferase (NT) domai 91.09
PF10706174 Aminoglyc_resit: Aminoglycoside-2''-adenylyltransf 90.79
COG1418222 Predicted HD superfamily hydrolase [General functi 90.62
COG3575184 Uncharacterized protein conserved in bacteria [Fun 89.68
PRK12703339 tRNA 2'-O-methylase; Reviewed 89.53
TIGR0027780 HDIG uncharacterized domain HDIG. This domain is f 88.72
PRK10119231 putative hydrolase; Provisional 88.32
COG1078 421 HD superfamily phosphohydrolases [General function 87.88
PF01966122 HD: HD domain; InterPro: IPR006674 This domain is 87.66
PF09970181 DUF2204: Nucleotidyl transferase of unknown functi 86.68
COG2206344 c-di-GMP phosphodiesterase class II (HD-GYP domain 86.58
PRK00106535 hypothetical protein; Provisional 86.49
TIGR01596177 cas3_HD CRISPR-associated endonuclease Cas3-HD. CR 86.1
PRK13480314 3'-5' exoribonuclease YhaM; Provisional 85.2
smart00471124 HDc Metal dependent phosphohydrolases with conserv 84.98
PRK12704520 phosphodiesterase; Provisional 84.43
TIGR03319514 YmdA_YtgF conserved hypothetical protein YmdA/YtgF 84.1
PF14792112 DNA_pol_B_palm: DNA polymerase beta palm ; PDB: 1R 82.88
PRK13300447 tRNA CCA-pyrophosphorylase; Provisional 81.05
PRK12705508 hypothetical protein; Provisional 80.68
TIGR03671408 cca_archaeal CCA-adding enzyme. 80.56
>TIGR02692 tRNA_CCA_actino tRNA adenylyltransferase Back     alignment and domain information 
Probab=100.00  E-value=4e-72  Score=612.38  Aligned_cols=431  Identities=24%  Similarity=0.313  Sum_probs=326.2

Q ss_pred             HHHHHHHHHHhcCCCCeEEEechhhHhhhhCCCCCCeEEEEcCCChHHHHHHHHHHHHhcCCccCCceEEecCCCCCCcc
Q 008067           79 IFSCLLNTLRHFNLETVLRVAGGWVRDKLLGKDCYDIDIALDNMMGSEFATKVAEYLSATGETAPSGFGVIPSNPDQSKH  158 (579)
Q Consensus        79 ~~~~l~~~~~~~~~~~~~~lVGG~VRD~LLg~~~~DiDi~~~~~~~~~f~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~  158 (579)
                      .+..+.+.++..  |+++|+|||||||+|||++|+|+||+|++. ++++    .+.|...+..      ++.    .++.
T Consensus        15 ~~~~i~~~l~~~--g~~~y~VGG~VRD~llg~~~~D~Di~~~~~-~~~~----~~~~~~~~~~------~~~----~g~~   77 (466)
T TIGR02692        15 LLAPLAAAFAAA--GHELYLVGGSVRDALLGRLGHDLDFTTDAR-PEET----LAILRPWADA------VWD----TGIA   77 (466)
T ss_pred             HHHHHHHHHHhC--CCEEEEeCcHHHHHHcCCCCCCEEEEeCCC-HHHH----HHHHHHhhhh------ccc----cCcc
Confidence            344456666765  588999999999999999999999999985 4444    4444332211      111    1456


Q ss_pred             eEEEEEEecCeeeeeecccccccCCCCCCcccccC-CHHHHHhcCCCCccceeeecCCC---ceecCccccHHHhhcCce
Q 008067          159 LETATMKLYDLWIDFVNLRCEDYSENSRIPTMRFG-TAEEDAYRRDLTINSLFYNINTS---SVEDLTGRGIADLKHGKI  234 (579)
Q Consensus       159 ~~t~~~~~~~~~iD~~~~R~e~y~~~~r~p~v~~~-t~~eDl~RRDfTINAla~~~~~~---~i~D~~g~G~~DL~~g~I  234 (579)
                      ++|+++..+|..+||+++|+|.|+.+++.|+|+++ ++++||.||||||||||||++++   .++||+| |++||++|+|
T Consensus        78 ~g~~~v~~~~~~~ei~~~r~e~~~~~~~~~~v~~~~~i~~Dl~rRDFTiNA~a~~~~~~~~g~l~D~~~-G~~Dl~~~~i  156 (466)
T TIGR02692        78 FGTVGAEKDGQQIEITTFRSDSYDGTSRKPEVTFGDTLEGDLIRRDFTVNAMAVRIPADGSLEFHDPVG-GLDDLLAKVL  156 (466)
T ss_pred             cceEEEEECCcEEEEEecccccCcCCCCCCcccCCCCHHHHHHhccccHHHhhccccCCCCceeecCCC-cHHHHhCCce
Confidence            79999999999999999999999999999999886 89999999999999999999865   8999998 9999999999


Q ss_pred             ecCCCCCCCcccCHHHHHHHHHHHHHcCCCCCHHHHHHHHchHHHHHHhccCCHHHHHHHHHHhhcCCCHHHHHHHHHHc
Q 008067          235 VTPLPPKATFLDDPLRVLRAIRFGARFDFILDEELKKAAASDEVKAALAAKISRERVGTEIDLMVSGNQPVKAMTHICGL  314 (579)
Q Consensus       235 R~~~~~~~~f~eDPlRiLRa~Rfaarlgf~i~~~t~~ai~~~~~~~~l~~~vs~eRi~~El~kiL~~~~~~~~l~~l~~~  314 (579)
                      |++++|.++|.|||+||||+||||+++||+|+++|.++|++.   ..++..+|.|||+.||.++|.++++..+++.|+++
T Consensus       157 r~v~~~~~~f~eDPlRiLRa~Rfaa~lgf~i~~~T~~~i~~~---~~~l~~i~~eRi~~E~~kil~~~~~~~~l~~l~~~  233 (466)
T TIGR02692       157 DTPATPEQSFGDDPLRMLRAARFVSQLGFEVAPRVRAAMTEM---ADQIERISAERVRVELDKLLLGDHPRAGIDLMVET  233 (466)
T ss_pred             EecCChHHhhhhChHHHHHHHHHHHHhCCCcCHHHHHHHHHH---HHHHhcCCHHHHHHHHHHHHcCCCcHHHHHHHHhh
Confidence            999998999999999999999999999999999999999876   34568899999999999999999999999999999


Q ss_pred             CCCcEeeeCCCCCCchhhcccchhhhhHHHHHHHH----HHHhhccCCCcccHHHHHHHhhhhcccCccccc--CCCC--
Q 008067          315 TLFWIVFKLPLQVEPEVLEGCEMFCTAYLDAAWDL----TQLIGSSTFNDDQRRLSQYAALFLPFRNTTYKD--NKGK--  386 (579)
Q Consensus       315 gll~~i~~~Pe~~~~~~~~~~~~~~~~~~~~~~~l----~~~l~~~~~~~e~~~ll~LAaLlhdigK~~~~~--~~gk--  386 (579)
                      |++..+|  ||+....    ..+...+|.+++|..    +..+. .....+....+.|||||||+||+.+..  +.|+  
T Consensus       234 glL~~~~--Pe~~~~~----~~~~~~~h~~~v~~Htl~vl~~~~-~l~~~~~~~~l~lAaLLHDiGK~~t~~~~~~g~~~  306 (466)
T TIGR02692       234 GLADRVL--PEIPALR----LEIDEHHQHKDVYEHSLTVLRQAI-DLEDDGPDLVLRWAALLHDIGKPATRRFEPDGRVS  306 (466)
T ss_pred             hhhhhcC--chHHHHh----cccccCCCCCcHHHHHHHHHHHHH-hccccccCHHHHHHHHHhhccCCCCcccccCCCcc
Confidence            9999999  9973211    112222232333321    11111 101112234689999999999987632  2233  


Q ss_pred             --cccchHH----HHHHHcCCCcccHHHHHHHHHHHHHHHhhhhhcccccccccccccccccccCCCcchhhHHHHHHHH
Q 008067          387 --KIPVVNY----TFRDSLKRKASDAETVMNIHRVLEKFLSLIPSLVSAEDVKVNDGQWSKELVDVPDASKLRVLTGFLL  460 (579)
Q Consensus       387 --~h~~~~~----~i~~rLkl~~~d~~~V~~Lv~~h~~~~~li~~l~~~~~~~~~~~~~~~~~~~~~~~~~~R~~lG~~l  460 (579)
                        +|+.+|+    .++.+|++|+++++.|++||++|+.+....            ..+|            ....+.+++
T Consensus       307 f~gH~~~Ga~~a~~iL~rLk~s~~~~~~V~~LV~~H~~~~~~~------------~~~~------------~~~~v~r~~  362 (466)
T TIGR02692       307 FHHHEVVGAKMVRKRMRALKYSKQMVEDVSRLVELHLRFHGYG------------DGQW------------TDSAVRRYV  362 (466)
T ss_pred             cCcHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCchhhcc------------cCCC------------CHHHHHHHH
Confidence              3777776    589999999999999999999997543220            0011            112334678


Q ss_pred             HHhhhhhHHHHHHHHhcCCCccCcchhhhhhhh-hhhHHHHHHHHHHHHHHHc-CCCcccccCcccChHHHHHHcCCCCC
Q 008067          461 REIKKFWRVALLISTLLYPTHVDHTEDMLNQHF-QLDSKRDLFVAAEKAITKL-GLDEVWDLKPLVNGKDIMNVLQLKSG  538 (579)
Q Consensus       461 R~~g~lWr~~llla~~~~~~~~~~~~d~~~~~~-~~~~~~~~y~~~~~~I~~~-~L~~a~~~KPLLnGkdIm~~Lglk~p  538 (579)
                      +++|+.+...++++.+          |+.+.+. ......+.|..+.+.+.+. ...+...++|+|||+|||+.||++ |
T Consensus       363 ~~~g~~l~~L~~L~~A----------D~~a~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~G~dL~~~lg~~-p  431 (466)
T TIGR02692       363 RDAGPLLPRLHKLVRA----------DCTTRNKRKAARLQAAYDDLEERIAELAAQEDLARVRPDLDGNEIMEILGIK-P  431 (466)
T ss_pred             HHhhhhHHHHHHHHHH----------hhccCCchhHHHHHHHHHHHHHHHHHHHhcccccCCCCCCCHHHHHHHcCCC-C
Confidence            8888877665555432          2111111 1112234555555544331 122345688999999999999999 9


Q ss_pred             CchHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 008067          539 GPLVREWQQKLLAWQLAHPSGTAEECIDWMKETH  572 (579)
Q Consensus       539 GP~vg~~l~~llewQL~~P~~t~ee~l~~lk~~~  572 (579)
                      |||+|++++.+.+||+++|..|++||+.|++.+.
T Consensus       432 Gp~iG~iL~~l~~~~~~g~~~~~~eal~~~~~~~  465 (466)
T TIGR02692       432 GPEVGQAWKYLKELRLERGPLEREEAIAELLAWW  465 (466)
T ss_pred             ChHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHh
Confidence            9999999999999999999999999999998764

The enzyme tRNA adenylyltransferase, also called tRNA-nucleotidyltransferase and CCA-adding enzyme, can add or repair the required CCA triplet at the 3'-end of tRNA molecules. Genes encoding tRNA include the CCA tail in some but not all bacteria, and this enzyme may be required for viability. Members of this family represent a distinct clade within the larger family pfam01743 (tRNA nucleotidyltransferase/poly(A) polymerase family protein). The example from Streptomyces coelicolor was shown to act as a CCA-adding enzyme and not as a poly(A) polymerase.
>PRK13299 tRNA CCA-pyrophosphorylase; Provisional Back     alignment and domain information
>KOG2159 consensus tRNA nucleotidyltransferase/poly(A) polymerase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK13298 tRNA CCA-pyrophosphorylase; Provisional Back     alignment and domain information
>PRK10885 cca multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase; Reviewed Back     alignment and domain information
>COG0617 PcnB tRNA nucleotidyltransferase/poly(A) polymerase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK11623 pcnB poly(A) polymerase I; Provisional Back     alignment and domain information
>TIGR01942 pcnB poly(A) polymerase Back     alignment and domain information
>PRK13297 tRNA CCA-pyrophosphorylase; Provisional Back     alignment and domain information
>PRK13296 tRNA CCA-pyrophosphorylase; Provisional Back     alignment and domain information
>cd05398 NT_ClassII-CCAase Nucleotidyltransferase (NT) domain of ClassII CCA-adding enzymes Back     alignment and domain information
>PF01743 PolyA_pol: Poly A polymerase head domain; InterPro: IPR002646 This group includes nucleic acid independent RNA polymerases, such as polynucleotide adenylyltransferase (2 Back     alignment and domain information
>PRK00227 glnD PII uridylyl-transferase; Provisional Back     alignment and domain information
>PRK03381 PII uridylyl-transferase; Provisional Back     alignment and domain information
>PRK00275 glnD PII uridylyl-transferase; Provisional Back     alignment and domain information
>PRK03059 PII uridylyl-transferase; Provisional Back     alignment and domain information
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase Back     alignment and domain information
>PRK05092 PII uridylyl-transferase; Provisional Back     alignment and domain information
>PRK01759 glnD PII uridylyl-transferase; Provisional Back     alignment and domain information
>PHA01806 hypothetical protein Back     alignment and domain information
>PRK05007 PII uridylyl-transferase; Provisional Back     alignment and domain information
>PRK04374 PII uridylyl-transferase; Provisional Back     alignment and domain information
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF13735 tRNA_NucTran2_2: tRNA nucleotidyltransferase domain 2 putative; PDB: 1MIY_A 1MIV_B 1MIW_B Back     alignment and domain information
>PF12627 PolyA_pol_RNAbd: Probable RNA and SrmB- binding site of polymerase A; PDB: 1OU5_B 3H38_A 3H3A_B 3H39_B 3H37_A 3AQN_A 3AQK_A 3AQM_B 3AQL_B 1MIY_A Back     alignment and domain information
>cd05402 NT_PAP_TUTase Nucleotidyltransferase (NT) domain of poly(A) polymerases and terminal uridylyl transferases Back     alignment and domain information
>cd07749 NT_Pol-beta-like_1 Nucleotidyltransferase (NT) domain of an uncharacterized subgroup of the Pol beta-like NT superfamily Back     alignment and domain information
>PF06042 DUF925: Bacterial protein of unknown function (DUF925); InterPro: IPR009267 This entry consists of several hypothetical bacterial proteins of unknown function Back     alignment and domain information
>TIGR03401 cyanamide_fam HD domain protein, cyanamide hydratase family Back     alignment and domain information
>TIGR00295 conserved hypothetical protein TIGR00295 Back     alignment and domain information
>cd05397 NT_Pol-beta-like Nucleotidyltransferase (NT) domain of DNA polymerase beta and similar proteins Back     alignment and domain information
>PF10706 Aminoglyc_resit: Aminoglycoside-2''-adenylyltransferase; InterPro: IPR019646 Aminoglycoside-2''-adenylyltransferase is conserved in Bacteria Back     alignment and domain information
>COG1418 Predicted HD superfamily hydrolase [General function prediction only] Back     alignment and domain information
>COG3575 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>PRK12703 tRNA 2'-O-methylase; Reviewed Back     alignment and domain information
>TIGR00277 HDIG uncharacterized domain HDIG Back     alignment and domain information
>PRK10119 putative hydrolase; Provisional Back     alignment and domain information
>COG1078 HD superfamily phosphohydrolases [General function prediction only] Back     alignment and domain information
>PF01966 HD: HD domain; InterPro: IPR006674 This domain is found in a superfamily of enzymes with a predicted or known phosphohydrolase activity [] Back     alignment and domain information
>PF09970 DUF2204: Nucleotidyl transferase of unknown function (DUF2204); InterPro: IPR018700 This family of hypothetical prokaryotic proteins has no known function Back     alignment and domain information
>COG2206 c-di-GMP phosphodiesterase class II (HD-GYP domain) [Signal transduction mechanisms] Back     alignment and domain information
>PRK00106 hypothetical protein; Provisional Back     alignment and domain information
>TIGR01596 cas3_HD CRISPR-associated endonuclease Cas3-HD Back     alignment and domain information
>PRK13480 3'-5' exoribonuclease YhaM; Provisional Back     alignment and domain information
>smart00471 HDc Metal dependent phosphohydrolases with conserved 'HD' motif Back     alignment and domain information
>PRK12704 phosphodiesterase; Provisional Back     alignment and domain information
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF Back     alignment and domain information
>PF14792 DNA_pol_B_palm: DNA polymerase beta palm ; PDB: 1RZT_A 3PML_A 2PFN_A 3HX0_K 3HWT_A 2GWS_E 2BCQ_A 3UPQ_A 2BCS_A 3UQ2_A Back     alignment and domain information
>PRK13300 tRNA CCA-pyrophosphorylase; Provisional Back     alignment and domain information
>PRK12705 hypothetical protein; Provisional Back     alignment and domain information
>TIGR03671 cca_archaeal CCA-adding enzyme Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query579
3h38_A441 The Structure Of Cca-Adding Enzyme Apo Form Ii Leng 2e-17
3h37_A441 The Structure Of Cca-Adding Enzyme Apo Form I Lengt 7e-17
1vfg_A390 Crystal Structure Of Trna Nucleotidyltransferase Co 6e-16
3aqm_A415 Structure Of Bacterial Protein (Form Ii) Length = 4 4e-12
3aqk_A414 Structure Of Bacterial Protein (Apo Form I) Length 4e-12
3aql_A415 Structure Of Bacterial Protein (Apo Form Ii) Length 4e-12
1ou5_A448 Crystal Structure Of Human Cca-Adding Enzyme Length 6e-11
1miy_A404 Crystal Structure Of Bacillus Stearothermophilus Cc 2e-07
1miv_A404 Crystal Structure Of Bacillus Stearothermophilus Cc 5e-06
>pdb|3H38|A Chain A, The Structure Of Cca-Adding Enzyme Apo Form Ii Length = 441 Back     alignment and structure 
Iteration: 1

 Score = 87.4 bits (215), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 68/219 (31%), Positives = 103/219 (47%), Gaps = 23/219 (10%)
Query: 98  VAGGWVRDKLLGKDCYDIDIALDNMMGSEFATKVAEYLSATGETAPSGFGVIPSNPDQSK 157
           V GG+VRD LLG    DIDI ++       A + AEY              +P    +  
Sbjct: 39  VVGGFVRDLLLGIKNLDIDIVVEGN-----ALEFAEYAKR----------FLPGKLVKHD 83
Query: 158 HLETATMKLYD-LWIDFVNLRCEDYSENSRIPTMRFGTAEEDAYRRDLTINSLFYNINTS 216
              TA++ L   L ID    R E Y   +++P +   T ++D YRRD TIN++   +N  
Sbjct: 84  KFMTASLFLKGGLRIDIATARLEYYESPAKLPDVEMSTIKKDLYRRDFTINAMAIKLNPK 143
Query: 217 SVE---DLTGRGIADLKHGKIVTPLPPKATFLDDPLRVLRAIRFGARFDFILDEELKKAA 273
                 D  G G  DLK G  V  +    +F+DDP R+LRAIRF  RFDF + EE  +  
Sbjct: 144 DFGLLIDFFG-GYRDLKEG--VIRVLHTLSFVDDPTRILRAIRFEQRFDFRI-EETTERL 199
Query: 274 ASDEVKAALAAKISRERVGTEIDLMVSGNQPVKAMTHIC 312
               V+     + +  R+  E++ ++    P+K++  + 
Sbjct: 200 LKQAVEEGYLERTTGPRLRQELEKILEEKNPLKSIRRMA 238
>pdb|3H37|A Chain A, The Structure Of Cca-Adding Enzyme Apo Form I Length = 441 Back     alignment and structure
>pdb|1VFG|A Chain A, Crystal Structure Of Trna Nucleotidyltransferase Complexed With A Primer Trna And An Incoming Atp Analog Length = 390 Back     alignment and structure
>pdb|3AQM|A Chain A, Structure Of Bacterial Protein (Form Ii) Length = 415 Back     alignment and structure
>pdb|3AQK|A Chain A, Structure Of Bacterial Protein (Apo Form I) Length = 414 Back     alignment and structure
>pdb|3AQL|A Chain A, Structure Of Bacterial Protein (Apo Form Ii) Length = 415 Back     alignment and structure
>pdb|1OU5|A Chain A, Crystal Structure Of Human Cca-Adding Enzyme Length = 448 Back     alignment and structure
>pdb|1MIY|A Chain A, Crystal Structure Of Bacillus Stearothermophilus Cca-adding Enzyme In Complex With Ctp Length = 404 Back     alignment and structure
>pdb|1MIV|A Chain A, Crystal Structure Of Bacillus Stearothermophilus Cca-Adding Enzyme Length = 404 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query579
3h38_A441 TRNA nucleotidyl transferase-related protein; tran 1e-44
1vfg_A390 A-adding enzyme, poly A polymerase; transferase, R 2e-42
1miw_A404 TRNA CCA-adding enzyme; tRNA nucleotidyltransferas 3e-41
3aql_A415 Poly(A) polymerase; transferase/RNA, ATP-binding, 1e-31
1ou5_A448 TRNA CCA-adding enzyme, tRNA-nucleotidyltransferas 2e-27
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-07
>3h38_A TRNA nucleotidyl transferase-related protein; transferase/RNA, nucleotide-binding, RNA-binding; 2.37A {Thermotoga maritima} PDB: 3h37_A 3h39_A* 3h3a_A* Length = 441 Back     alignment and structure
 Score =  162 bits (413), Expect = 1e-44
 Identities = 94/485 (19%), Positives = 174/485 (35%), Gaps = 97/485 (20%)

Query: 98  VAGGWVRDKLLGKDCYDIDIALDNMMGSEFATKVAEYLSATGETAPSGFGVIPSNPDQSK 157
           V GG+VRD LLG    DIDI ++     EFA     +L          F           
Sbjct: 39  VVGGFVRDLLLGIKNLDIDIVVEGN-ALEFAEYAKRFLPGKLVKHDK-FM---------- 86

Query: 158 HLETATMKLYD-LWIDFVNLRCEDYSENSRIPTMRFGTAEEDAYRRDLTINSLFYNINTS 216
              TA++ L   L ID    R E Y   +++P +   T ++D YRRD TIN++   +N  
Sbjct: 87  ---TASLFLKGGLRIDIATARLEYYESPAKLPDVEMSTIKKDLYRRDFTINAMAIKLNPK 143

Query: 217 SVE---DLTGRGIADLKHGKIVTPLPPKATFLDDPLRVLRAIRFGARFDFILDEELKKAA 273
                 D  G G  DLK G I        +F+DDP R+LRAIRF  RFDF ++E  ++  
Sbjct: 144 DFGLLIDFFG-GYRDLKEGVIRV--LHTLSFVDDPTRILRAIRFEQRFDFRIEETTER-L 199

Query: 274 ASDEVKAALAAKISRERVGTEIDLMVSGNQPVKAMTHICGLTLFWIVFKLPLQVEPEVLE 333
               V+     + +  R+  E++ ++    P+K++  +    +   +F       P+   
Sbjct: 200 LKQAVEEGYLERTTGPRLRQELEKILEEKNPLKSIRRMAQFDVIKHLF-------PKTYY 252

Query: 334 GCEMFCTAYLDAAWDLTQLIGSSTFNDDQRRLSQYAALFLPFRNTTYKDNKGKKIPVVNY 393
              M     ++  +            ++   + ++ A+   F      +    +      
Sbjct: 253 TPSM--DEKMENLFRNIPW-----VEENFGEVDRFYAVLHVFL-----EFYDDES----- 295

Query: 394 TFRDSLKRKASDAETVMNIHRVLEKFLSLIPSLVSAEDVKVNDGQWSKELVDVPDASKLR 453
            +++   R +     +  I  V +   +L+  L      +V        +  V + +   
Sbjct: 296 -WKEVRDRYSLRRNLINEIRHVEKSAPALLEML----SERVPASFVYPLVKGVSNETICH 350

Query: 454 VLTGFLLREIKKFWRVALLISTLLYPTHVDHTEDMLNQHFQLDSKRDLFVAAEKAITKLG 513
            L      +   F    L                      ++ + +   +          
Sbjct: 351 FLAYLSGEKEGLFKSYLL----------------------KIKNTKLEKI---------- 378

Query: 514 LDEVWDLKPLVNGKDIMNVLQLKSGGPLVREWQQKLLAWQLAHPSGTAEECIDWMKETHL 573
                      NG+ ++    + S G ++ E  +K+L  +L   +   EE ++ +  +  
Sbjct: 379 -----------NGEYLIR-KGITS-GKIIGEVLEKILMKKLDGDTRDEEEILEEVLASLE 425

Query: 574 KRIKL 578
              KL
Sbjct: 426 TEGKL 430
>1vfg_A A-adding enzyme, poly A polymerase; transferase, RNA, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: APC; 2.80A {Aquifex aeolicus} SCOP: a.173.1.1 d.218.1.4 Length = 390 Back     alignment and structure
>1miw_A TRNA CCA-adding enzyme; tRNA nucleotidyltransferase, translation, transferase; HET: ATP; 3.00A {Geobacillus stearothermophilus} SCOP: a.173.1.1 d.218.1.4 PDB: 1miv_A* 1miy_A* Length = 404 Back     alignment and structure
>3aql_A Poly(A) polymerase; transferase/RNA, ATP-binding, nucleotide-binding, RNA-bindin transferase, nucleotidyltransferase, ATP binding, A-phospho; 3.00A {Escherichia coli} PDB: 3aqn_A* 3aqk_A 3aqm_A Length = 415 Back     alignment and structure
>1ou5_A TRNA CCA-adding enzyme, tRNA-nucleotidyltransferase; polymerase, translation; 3.40A {Homo sapiens} SCOP: a.173.1.1 d.218.1.4 Length = 448 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query579
3h38_A441 TRNA nucleotidyl transferase-related protein; tran 100.0
1miw_A404 TRNA CCA-adding enzyme; tRNA nucleotidyltransferas 100.0
1ou5_A448 TRNA CCA-adding enzyme, tRNA-nucleotidyltransferas 100.0
1vfg_A390 A-adding enzyme, poly A polymerase; transferase, R 100.0
3aql_A415 Poly(A) polymerase; transferase/RNA, ATP-binding, 100.0
3djb_A223 Hydrolase, HD family; all alpha-helical protein., 95.25
3b57_A209 LIN1889 protein; Q92AN1, X-RAY, NESG, structural g 95.12
3dto_A223 BH2835 protein; all alpha-helical protein, structu 94.82
2qgs_A225 Protein Se1688; alpha-helical protein, structural 94.71
2pjq_A231 Uncharacterized protein LP_2664; LPR71, NESG, stru 94.68
3gw7_A239 Uncharacterized protein YEDJ; all alpha-helical pr 94.1
2la3_A191 Uncharacterized protein; ATP binding, CTP binding, 93.96
2pq7_A220 Predicted HD superfamily hydrolase; 104161995, HD 93.45
4e8j_A161 Lincosamide resistance protein; structural genomic 92.66
3nyb_A323 Poly(A) RNA polymerase protein 2; polya RNA polyme 90.4
2fcl_A169 Hypothetical protein TM1012; putative nucleotidylt 88.43
3ccg_A190 HD superfamily hydrolase; NP_347894.1, HD domain, 84.34
>3h38_A TRNA nucleotidyl transferase-related protein; transferase/RNA, nucleotide-binding, RNA-binding; 2.37A {Thermotoga maritima} PDB: 3h37_A 3h39_A* 3h3a_A* Back     alignment and structure
Probab=100.00  E-value=3.7e-65  Score=549.10  Aligned_cols=407  Identities=21%  Similarity=0.309  Sum_probs=302.2

Q ss_pred             eecChhHHHHHHHHHHHHHhcCCCCeEEEechhhHhhhhCCCCCCeEEEEcCCChHHHHHHHHHHHHhcCCccCCceEEe
Q 008067           70 IELTDTETKIFSCLLNTLRHFNLETVLRVAGGWVRDKLLGKDCYDIDIALDNMMGSEFATKVAEYLSATGETAPSGFGVI  149 (579)
Q Consensus        70 i~l~~~e~~~~~~l~~~~~~~~~~~~~~lVGG~VRD~LLg~~~~DiDi~~~~~~~~~f~~~~~~~~~~~g~~~~~~~~~i  149 (579)
                      ..|.+.-..++..|.+.++..  |+++|+|||||||+|||++++|+||||++. +.+|++.+.+.+         +..++
T Consensus        13 ~~lp~~~~~~l~~l~~~~~~~--G~~aylVGG~VRD~LLg~~~~D~Di~t~~~-~~~~~~~~~~~~---------~~~~~   80 (441)
T 3h38_A           13 ERVDPKILNLFRLLGKFGDEV--NMPVYVVGGFVRDLLLGIKNLDIDIVVEGN-ALEFAEYAKRFL---------PGKLV   80 (441)
T ss_dssp             HHSCHHHHHHHHHHHHHHHHT--TCCEEEETHHHHHHHHTCCCCCEEEEESSC-HHHHHHHHHTTS---------CEEEE
T ss_pred             HhCCHHHHHHHHHHHHHHHHc--CCeEEEEcHHHHHHHCCCCCCCeeEEeCCC-HHHHHHHHHHHc---------CCEec
Confidence            357788888888888887776  488999999999999999999999999984 666766655421         12222


Q ss_pred             cCCCCCCcceEEEEEEe-cCeeeeeecccccccCCCCCCcccccCCHHHHHhcCCCCccceeeecC---CCceecCcccc
Q 008067          150 PSNPDQSKHLETATMKL-YDLWIDFVNLRCEDYSENSRIPTMRFGTAEEDAYRRDLTINSLFYNIN---TSSVEDLTGRG  225 (579)
Q Consensus       150 ~~~~~~~~~~~t~~~~~-~~~~iD~~~~R~e~y~~~~r~p~v~~~t~~eDl~RRDfTINAla~~~~---~~~i~D~~g~G  225 (579)
                      .     +++++|+++.+ +|..+||+++|+|.|..+|++|.|+++|+++||.|||||||||||+++   .|.++|||| |
T Consensus        81 ~-----g~~~gt~~v~~~~g~~~ev~t~R~e~~~~~~~~p~V~~~~l~eDl~RRDFTINAla~~~~~~~~g~liD~~g-G  154 (441)
T 3h38_A           81 K-----HDKFMTASLFLKGGLRIDIATARLEYYESPAKLPDVEMSTIKKDLYRRDFTINAMAIKLNPKDFGLLIDFFG-G  154 (441)
T ss_dssp             C-----CSSTTEEEEEETTSCEEEEEECCEECCSSSSSCCEESCCCHHHHHHTSSBGGGSCEEECSGGGTTEEECSSS-H
T ss_pred             c-----CCcCcEEEEEEeCCeEEEEecccccccCCCCCCCccCCCCHHHHHHhccchhhhhhcccCCCCCCeEeCCCC-C
Confidence            1     45679999999 789999999999999999999999999999999999999999999987   378999998 9


Q ss_pred             HHHhhcCceecCCCCCCCcccCHHHHHHHHHHHHHcCCCCCHHHHHHHHchHHHHHHhccCCHHHHHHHHHHhhcCCCHH
Q 008067          226 IADLKHGKIVTPLPPKATFLDDPLRVLRAIRFGARFDFILDEELKKAAASDEVKAALAAKISRERVGTEIDLMVSGNQPV  305 (579)
Q Consensus       226 ~~DL~~g~IR~~~~~~~~f~eDPlRiLRa~Rfaarlgf~i~~~t~~ai~~~~~~~~l~~~vs~eRi~~El~kiL~~~~~~  305 (579)
                      ++||++|+||++++  .+|.|||+||||+||||+++||+|+++|..+|++.. ...++.++|.|||+.|+.|||.++++.
T Consensus       155 ~~DL~~~~iR~v~~--~~F~eDplRiLRa~Rfaa~lgf~i~~~t~~~i~~~~-~~~~l~~is~eRi~~El~kll~~~~~~  231 (441)
T 3h38_A          155 YRDLKEGVIRVLHT--LSFVDDPTRILRAIRFEQRFDFRIEETTERLLKQAV-EEGYLERTTGPRLRQELEKILEEKNPL  231 (441)
T ss_dssp             HHHHHTTEECBSST--THHHHCTTHHHHHHHHHHHTTCEECHHHHHHHHHHH-HTTHHHHSCHHHHHHHHHHHHTSSCHH
T ss_pred             HHHHhCCEEEECCC--CChhhCHHHHHHHHHHHHHhCCCCChHHHHHHHHHH-hhchhccCCHHHHHHHHHHHHcCCCHH
Confidence            99999999999965  589999999999999999999999999999998641 235667899999999999999999999


Q ss_pred             HHHHHHHHcCCCcEeeeCCCCCCchhhcccchhhhhHHHHHHHHHHHhhccCCCcccHHHHHHHhhhhcccCcccccCCC
Q 008067          306 KAMTHICGLTLFWIVFKLPLQVEPEVLEGCEMFCTAYLDAAWDLTQLIGSSTFNDDQRRLSQYAALFLPFRNTTYKDNKG  385 (579)
Q Consensus       306 ~~l~~l~~~gll~~i~~~Pe~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~e~~~ll~LAaLlhdigK~~~~~~~g  385 (579)
                      .+++.|+++|++..+|  |++.....   ..+ ....+..........    +.......++|++|+|++.+..      
T Consensus       232 ~~l~~l~~~glL~~i~--Pel~~~~~---~~~-~l~~~~~~~~~~~~~----~~~~~~~~~~l~~L~~~~~~~~------  295 (441)
T 3h38_A          232 KSIRRMAQFDVIKHLF--PKTYYTPS---MDE-KMENLFRNIPWVEEN----FGEVDRFYAVLHVFLEFYDDES------  295 (441)
T ss_dssp             HHHHHHHHTTHHHHHS--TTCCCCHH---HHH-HHHHHHHHHHHHHHH----HCCCCHHHHHHHHHTTTCCHHH------
T ss_pred             HHHHHHHHcCChHHhC--cccccchh---HHH-HHHHHHHHHHHHHhh----ccchhhHHHHHHHHhCCCCHHH------
Confidence            9999999999999999  99732111   000 011111111111111    1112334567899999875432      


Q ss_pred             CcccchHHHHHHHcCCCcccHHHHHHHHHHHHHHHhhhhhcccccccccccccccccccCCCcchhhHHHHHHHHHHhhh
Q 008067          386 KKIPVVNYTFRDSLKRKASDAETVMNIHRVLEKFLSLIPSLVSAEDVKVNDGQWSKELVDVPDASKLRVLTGFLLREIKK  465 (579)
Q Consensus       386 k~h~~~~~~i~~rLkl~~~d~~~V~~Lv~~h~~~~~li~~l~~~~~~~~~~~~~~~~~~~~~~~~~~R~~lG~~lR~~g~  465 (579)
                            ...++.+|++|+++++.+..++..+..+...+..   ..         +.       +...     .+++.++.
T Consensus       296 ------~~~~~~rl~ls~~~~~~l~~l~~~~~~~~~~l~~---~~---------~~-------~~l~-----~~l~~~~~  345 (441)
T 3h38_A          296 ------WKEVRDRYSLRRNLINEIRHVEKSAPALLEMLSE---RV---------PA-------SFVY-----PLVKGVSN  345 (441)
T ss_dssp             ------HHHHHHHTTCCTTHHHHHHHHHHHHHHHHHHHHT---TC---------CG-------GGTH-----HHHTTCCH
T ss_pred             ------HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhc---cC---------CH-------HHHH-----HHHhhcCH
Confidence                  2468999999999999999998876544332211   00         00       1121     23333332


Q ss_pred             hhHHHHHHHHhcCCCccCcchhhhhhhhhhhHHHHHHHHHHHHHHHcCCCcccccCcc-cChHHHHHHcCCCCCCchHHH
Q 008067          466 FWRVALLISTLLYPTHVDHTEDMLNQHFQLDSKRDLFVAAEKAITKLGLDEVWDLKPL-VNGKDIMNVLQLKSGGPLVRE  544 (579)
Q Consensus       466 lWr~~llla~~~~~~~~~~~~d~~~~~~~~~~~~~~y~~~~~~I~~~~L~~a~~~KPL-LnGkdIm~~Lglk~pGP~vg~  544 (579)
                      .   .+++ +..    ...      .  .      ....+..++..     ....+|+ |||+|||++ |++ |||++|+
T Consensus       346 e---~l~~-~~~----~~~------~--~------~~~~l~~~l~~-----~~~~~~~~i~G~DLi~~-G~~-PGP~~G~  396 (441)
T 3h38_A          346 E---TICH-FLA----YLS------G--E------KEGLFKSYLLK-----IKNTKLEKINGEYLIRK-GIT-SGKIIGE  396 (441)
T ss_dssp             H---HHHH-HHT----TCC------H--H------HHHHHHHHHHH-----HHSSCSCSSCCHHHHTT-TCC-CSHHHHH
T ss_pred             H---HHHH-HHH----hCc------c--h------HHHHHHHHHHH-----hccCCCCCCCHHHHHHc-CCC-CCcHHHH
Confidence            2   2211 111    000      0  0      11122233322     1247889 999999998 999 9999999


Q ss_pred             HHHHHHHHHHcCCCCCHHHHHHHHHHHhhhh
Q 008067          545 WQQKLLAWQLAHPSGTAEECIDWMKETHLKR  575 (579)
Q Consensus       545 ~l~~llewQL~~P~~t~ee~l~~lk~~~~~~  575 (579)
                      +|+++.+||+++   |++|+++|+++...+.
T Consensus       397 iL~~l~~a~ldg---t~ee~l~~v~~~~~~~  424 (441)
T 3h38_A          397 VLEKILMKKLDG---DTRDEEEILEEVLASL  424 (441)
T ss_dssp             HHHHHHHHHHHC---CSSCSSHHHHHHHHHC
T ss_pred             HHHHHHHHHHhC---CHHHHHHHHHHHHHhc
Confidence            999999999999   9999999999876654
>1miw_A TRNA CCA-adding enzyme; tRNA nucleotidyltransferase, translation, transferase; HET: ATP; 3.00A {Geobacillus stearothermophilus} SCOP: a.173.1.1 d.218.1.4 PDB: 1miv_A* 1miy_A* Back     alignment and structure
>1ou5_A TRNA CCA-adding enzyme, tRNA-nucleotidyltransferase; polymerase, translation; 3.40A {Homo sapiens} SCOP: a.173.1.1 d.218.1.4 Back     alignment and structure
>1vfg_A A-adding enzyme, poly A polymerase; transferase, RNA, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: APC; 2.80A {Aquifex aeolicus} SCOP: a.173.1.1 d.218.1.4 Back     alignment and structure
>3aql_A Poly(A) polymerase; transferase/RNA, ATP-binding, nucleotide-binding, RNA-bindin transferase, nucleotidyltransferase, ATP binding, A-phospho; 3.00A {Escherichia coli} PDB: 3aqn_A* 3aqk_A 3aqm_A Back     alignment and structure
>3djb_A Hydrolase, HD family; all alpha-helical protein., structural genomics, PSI-2, protein structure initiative; 2.90A {Bacillus thuringiensis serovarkonkukian} SCOP: a.211.1.1 Back     alignment and structure
>3b57_A LIN1889 protein; Q92AN1, X-RAY, NESG, structural genomics, PSI-2, protein structure initiative; 3.00A {Listeria innocua CLIP11262} SCOP: a.211.1.1 Back     alignment and structure
>3dto_A BH2835 protein; all alpha-helical protein, structural genomics, PSI-2, protein structure initiative; 3.30A {Bacillus halodurans} SCOP: a.211.1.1 Back     alignment and structure
>2qgs_A Protein Se1688; alpha-helical protein, structural genomics, PSI-2, protein S initiative, northeast structural genomics consortium; 2.00A {Staphylococcus epidermidis} SCOP: a.211.1.1 Back     alignment and structure
>2pjq_A Uncharacterized protein LP_2664; LPR71, NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Lactobacillus plantarum WCFS1} SCOP: a.211.1.1 Back     alignment and structure
>3gw7_A Uncharacterized protein YEDJ; all alpha-helical protein, structural genomics, PSI-2, protein structure initiative; 3.30A {Escherichia coli k-12} Back     alignment and structure
>2la3_A Uncharacterized protein; ATP binding, CTP binding, structural genomics, PSI-biology, structure initiative; NMR {Streptococcus pneumoniae} Back     alignment and structure
>2pq7_A Predicted HD superfamily hydrolase; 104161995, HD domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.45A {Uncultured thermotogales bacterium} SCOP: a.211.1.1 Back     alignment and structure
>4e8j_A Lincosamide resistance protein; structural genomics, antibiotic resistance, center for struc genomics of infectious diseases (csgid); HET: MSE LN0; 1.82A {Staphylococcus haemolyticus} PDB: 4e8i_A* 4fo1_A* Back     alignment and structure
>3nyb_A Poly(A) RNA polymerase protein 2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae} Back     alignment and structure
>2fcl_A Hypothetical protein TM1012; putative nucleotidyltransferase, structural genomics, joint for structural genomics, JCSG; HET: MLY; 1.20A {Thermotoga maritima} SCOP: d.218.1.11 PDB: 2ewr_A Back     alignment and structure
>3ccg_A HD superfamily hydrolase; NP_347894.1, HD domain, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.50A {Clostridium acetobutylicum atcc 824} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 579
d1vfga2136 d.218.1.4 (A:1-136) Poly A polymerase PcnB {Aquife 9e-16
d1ou5a2152 d.218.1.4 (A:-1-150) tRNA CCA-adding enzyme, head 1e-14
d1miwa1265 a.173.1.1 (A:140-404) tRNA CCA-adding enzyme, C-te 3e-13
d1miwa1265 a.173.1.1 (A:140-404) tRNA CCA-adding enzyme, C-te 4e-04
d1miwa2139 d.218.1.4 (A:1-139) tRNA CCA-adding enzyme, head d 1e-11
d1vfga1215 a.173.1.1 (A:137-351) Poly A polymerase PcnB {Aqui 1e-10
d1ou5a1204 a.173.1.1 (A:151-354) tRNA CCA-adding enzyme, C-te 7e-09
>d1vfga2 d.218.1.4 (A:1-136) Poly A polymerase PcnB {Aquifex aeolicus [TaxId: 63363]} Length = 136 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Nucleotidyltransferase
superfamily: Nucleotidyltransferase
family: Poly A polymerase head domain-like
domain: Poly A polymerase PcnB
species: Aquifex aeolicus [TaxId: 63363]

 Score = 72.2 bits (176), Expect = 9e-16
 Identities = 36/139 (25%), Positives = 56/139 (40%), Gaps = 19/139 (13%)

Query: 96  LRVAGGWVRDKLLGKDCYDIDIALDNMMGSEFATKVAEYLSATGETAPSGFGVIPSNPDQ 155
             + GG VRD LLGK+ +D+D  ++             +                 N   
Sbjct: 13  AYIVGGVVRDILLGKEVWDVDFVVEGNAIELAKELARRH---------------GVNVHP 57

Query: 156 SKHLETATMKLYDLWIDFVNLRCEDYSENSRIPTMRFGTAEEDAYRRDLTINSLFYNINT 215
                TA +K+  L ++F   R E Y      P +   + +ED  RRD TIN++  ++N 
Sbjct: 58  FPEFGTAHLKIGKLKLEFATARRETYPRPGAYPKVEPASLKEDLIRRDFTINAMAISVNL 117

Query: 216 SS---VEDLTGRGIADLKH 231
                + D  G G+ DLK 
Sbjct: 118 EDYGTLIDYFG-GLRDLKD 135
>d1ou5a2 d.218.1.4 (A:-1-150) tRNA CCA-adding enzyme, head domain {Human (Homo sapiens), mitochondrial [TaxId: 9606]} Length = 152 Back     information, alignment and structure
>d1miwa1 a.173.1.1 (A:140-404) tRNA CCA-adding enzyme, C-terminal domains {Bacillus stearothermophilus [TaxId: 1422]} Length = 265 Back     information, alignment and structure
>d1miwa1 a.173.1.1 (A:140-404) tRNA CCA-adding enzyme, C-terminal domains {Bacillus stearothermophilus [TaxId: 1422]} Length = 265 Back     information, alignment and structure
>d1miwa2 d.218.1.4 (A:1-139) tRNA CCA-adding enzyme, head domain {Bacillus stearothermophilus [TaxId: 1422]} Length = 139 Back     information, alignment and structure
>d1vfga1 a.173.1.1 (A:137-351) Poly A polymerase PcnB {Aquifex aeolicus [TaxId: 63363]} Length = 215 Back     information, alignment and structure
>d1ou5a1 a.173.1.1 (A:151-354) tRNA CCA-adding enzyme, C-terminal domains {Human (Homo sapiens), mitochondrial [TaxId: 9606]} Length = 204 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query579
d1miwa1265 tRNA CCA-adding enzyme, C-terminal domains {Bacill 100.0
d1vfga2136 Poly A polymerase PcnB {Aquifex aeolicus [TaxId: 6 100.0
d1ou5a2152 tRNA CCA-adding enzyme, head domain {Human (Homo s 99.97
d1miwa2139 tRNA CCA-adding enzyme, head domain {Bacillus stea 99.96
d1ou5a1204 tRNA CCA-adding enzyme, C-terminal domains {Human 99.84
d1vfga1215 Poly A polymerase PcnB {Aquifex aeolicus [TaxId: 6 99.84
d3b57a1201 Uncharacterized protein Lin1889 {Listeria innocua 94.43
d3djba1213 Uncharacterized protein BT9727_1981 {Bacillus thur 94.33
d2qgsa1216 Uncharacterized protein SE1688 {Staphylococcus epi 93.94
d2pq7a1217 Predicted hydrolase mes0020 {Uncultured thermotoga 93.3
d2fcla1157 Hypothetical protein TM1012 {Thermotoga maritima [ 93.17
d3dtoa1212 Uncharacterized protein BH2835 {Bacillus haloduran 91.81
d1r89a2142 tRNA nucleotidyltransferase, N-terminal domain {Ar 90.44
d2pjqa1215 Uncharacterized protein LP2664 {Lactobacillus plan 88.71
d1no5a_100 Hypothetical protein HI0073 {Haemophilus influenza 84.83
d2q66a2197 Poly(A) polymerase, PAP, N-terminal domain {Baker' 83.27
>d1miwa1 a.173.1.1 (A:140-404) tRNA CCA-adding enzyme, C-terminal domains {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
class: All alpha proteins
fold: Poly A polymerase C-terminal region-like
superfamily: Poly A polymerase C-terminal region-like
family: Poly A polymerase C-terminal region-like
domain: tRNA CCA-adding enzyme, C-terminal domains
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=100.00  E-value=5e-35  Score=291.86  Aligned_cols=262  Identities=19%  Similarity=0.154  Sum_probs=181.8

Q ss_pred             ceecCCCCCCCcccCHHHHHHHHHHHHHcCCCCCHHHHHHHHchHHHHHHhccCCHHHHHHHHHHhhcCCCHHHHHHHHH
Q 008067          233 KIVTPLPPKATFLDDPLRVLRAIRFGARFDFILDEELKKAAASDEVKAALAAKISRERVGTEIDLMVSGNQPVKAMTHIC  312 (579)
Q Consensus       233 ~IR~~~~~~~~f~eDPlRiLRa~Rfaarlgf~i~~~t~~ai~~~~~~~~l~~~vs~eRi~~El~kiL~~~~~~~~l~~l~  312 (579)
                      +||+||+|.++|.|||+|||||+|||+||||+|+++|.++|+++   ..++.++|+|||+.|+.|||.++++..+++.|+
T Consensus         1 iiR~vg~p~~rf~EDpLRiLRa~RFa~rl~f~i~~~t~~ai~~~---~~~l~~vS~ERI~~El~kil~~~~~~~~l~~l~   77 (265)
T d1miwa1           1 IIRTVGEAEKRFREDALRMMRAVRFVSELGFALAPDTEQAIVQN---APLLAHISVERMTMEMEKLLGGPFAARALPLLA   77 (265)
T ss_dssp             EECBSSCHHHHHHHCTHHHHHHHHHHHHHCCEECHHHHHHHHHH---GGGGGGSCHHHHHHHHHHHHTSSSHHHHHHHHH
T ss_pred             CeeeCCCHHHhccccHHHHHHHHHHHHHhCCCccHHHHHHHHHH---HHHHHhcCHHHHHHHHHHHHhccchHHHHHHHH
Confidence            58999999999999999999999999999999999999999875   566789999999999999999999999999999


Q ss_pred             HcCCCcEeeeCCCCCCchhhcccchhhhhHHHHHHHHHHHhhccCCCcccHHHHHHHhhhhcccCcccccCCCCcccchH
Q 008067          313 GLTLFWIVFKLPLQVEPEVLEGCEMFCTAYLDAAWDLTQLIGSSTFNDDQRRLSQYAALFLPFRNTTYKDNKGKKIPVVN  392 (579)
Q Consensus       313 ~~gll~~i~~~Pe~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~e~~~ll~LAaLlhdigK~~~~~~~gk~h~~~~  392 (579)
                      ++|++. ++  |++...   +...+           .....   .+.........|++++|++++...            
T Consensus        78 ~~gl~~-~l--p~l~~~---~~~~~-----------~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~------------  125 (265)
T d1miwa1          78 ETGLNA-YL--PGLAGK---EKQLR-----------LAAAY---RWPWLAAREERWALLCHALGVQES------------  125 (265)
T ss_dssp             HSTTTT-SS--TTCSSC---HHHHH-----------HGGGS---CGGGCCSHHHHHHHHHHHHTCSCH------------
T ss_pred             HCChHH-hC--ccccch---hhHHH-----------HHHHh---hcccccchHHHHHHHHHhhhHHHH------------
Confidence            999886 45  775211   10000           00000   000112234567889999987642            


Q ss_pred             HHHHHHcCCCcccHHHHHHHHHHHHHHHhhhhhcccccccccccccccccccCCCcchhhHHHHHHHHHHhhhhhHHHHH
Q 008067          393 YTFRDSLKRKASDAETVMNIHRVLEKFLSLIPSLVSAEDVKVNDGQWSKELVDVPDASKLRVLTGFLLREIKKFWRVALL  472 (579)
Q Consensus       393 ~~i~~rLkl~~~d~~~V~~Lv~~h~~~~~li~~l~~~~~~~~~~~~~~~~~~~~~~~~~~R~~lG~~lR~~g~lWr~~ll  472 (579)
                      ..++++|++|+++.+.+..++..|..+...       .                   +..+..+...-.+....+..  +
T Consensus       126 ~~~~~~lk~s~~~~~~~~~~~~~~~~~~~~-------~-------------------~~~~~~~~~~~~~~~~~~~~--l  177 (265)
T d1miwa1         126 RPFLRAWKLPNKVVDEAGAILTALADIPRP-------E-------------------AWTNEQLFSAGLERALSVET--V  177 (265)
T ss_dssp             HHHHHHTTCCHHHHHHHHHHHHHHHHCCSG-------G-------------------GCCHHHHHHHHHHHHHHHHH--H
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHHHHHhh-------H-------------------HHHHHHHHHhHHHHHHHHHH--H
Confidence            367899999999999999998876542211       0                   01111111111111111111  1


Q ss_pred             HHHhcCCCccCcchhhhhhhhhhhHHHHHHHHHHHHHHHcCCCcccccCcccChHHHHHHcCCCCCCchHHHHHHHHHHH
Q 008067          473 ISTLLYPTHVDHTEDMLNQHFQLDSKRDLFVAAEKAITKLGLDEVWDLKPLVNGKDIMNVLQLKSGGPLVREWQQKLLAW  552 (579)
Q Consensus       473 la~~~~~~~~~~~~d~~~~~~~~~~~~~~y~~~~~~I~~~~L~~a~~~KPLLnGkdIm~~Lglk~pGP~vg~~l~~llew  552 (579)
                      .+....    .        .  .   ...++.+.+.+.+  +......+|.|||+|||+.+|++ |||++|++++.+.+|
T Consensus       178 ~~~~~~----~--------~--~---~~~~~~l~~~~~~--~~~~~~~~l~i~G~dL~~~~g~~-pGp~iG~il~~l~~~  237 (265)
T d1miwa1         178 RAAFTG----A--------P--P---GPWHEKLRRRFAS--LPIKTKGELAVNGKDVIEWVGKP-AGPWVKEALDAIWRA  237 (265)
T ss_dssp             HHHHHC----C--------C--S---HHHHHHHHHHHTT--CSCSSGGGCSSCHHHHHHHHTCC-SSHHHHHHHHHHHHH
T ss_pred             HHHHhc----C--------C--c---hhHHHHHHHHHHh--chhhhccccCCCHHHHHHHcCCC-CCHHHHHHHHHHHHH
Confidence            111110    0        0  0   0122333333333  33223344789999999999999 999999999999999


Q ss_pred             HHcCCCC-CHHHHHHHHHHHhhhhhh
Q 008067          553 QLAHPSG-TAEECIDWMKETHLKRIK  577 (579)
Q Consensus       553 QL~~P~~-t~ee~l~~lk~~~~~~~~  577 (579)
                      |++|+.. |+|++++|++++..++.|
T Consensus       238 ~l~~~~~n~ke~l~~~l~~~~k~~~~  263 (265)
T d1miwa1         238 VVNGEVENEKERIYAWLMERNRTREK  263 (265)
T ss_dssp             HHTTSSCSCHHHHHHHHHHHHTHHHH
T ss_pred             HHcCCCCCCHHHHHHHHHHhhHhhcc
Confidence            9999986 889999999998877764
>d1vfga2 d.218.1.4 (A:1-136) Poly A polymerase PcnB {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d1miwa2 d.218.1.4 (A:1-139) tRNA CCA-adding enzyme, head domain {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1ou5a1 a.173.1.1 (A:151-354) tRNA CCA-adding enzyme, C-terminal domains {Human (Homo sapiens), mitochondrial [TaxId: 9606]} Back     information, alignment and structure
>d1vfga1 a.173.1.1 (A:137-351) Poly A polymerase PcnB {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d3b57a1 a.211.1.1 (A:1-201) Uncharacterized protein Lin1889 {Listeria innocua [TaxId: 1642]} Back     information, alignment and structure
>d3djba1 a.211.1.1 (A:2-214) Uncharacterized protein BT9727_1981 {Bacillus thuringiensis [TaxId: 1428]} Back     information, alignment and structure
>d2qgsa1 a.211.1.1 (A:1-216) Uncharacterized protein SE1688 {Staphylococcus epidermidis [TaxId: 1282]} Back     information, alignment and structure
>d2pq7a1 a.211.1.1 (A:1-217) Predicted hydrolase mes0020 {Uncultured thermotogales bacterium [TaxId: 221214]} Back     information, alignment and structure
>d2fcla1 d.218.1.11 (A:1-157) Hypothetical protein TM1012 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d3dtoa1 a.211.1.1 (A:2-213) Uncharacterized protein BH2835 {Bacillus halodurans [TaxId: 86665]} Back     information, alignment and structure
>d1r89a2 d.218.1.7 (A:1-142) tRNA nucleotidyltransferase, N-terminal domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d2pjqa1 a.211.1.1 (A:1-215) Uncharacterized protein LP2664 {Lactobacillus plantarum [TaxId: 1590]} Back     information, alignment and structure
>d1no5a_ d.218.1.5 (A:) Hypothetical protein HI0073 {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d2q66a2 d.218.1.3 (A:5-201) Poly(A) polymerase, PAP, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure