Citrus Sinensis ID: 008068

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------58

MLEKMETVDVDELIEEFETITKDAERIQRETLRKILEENASAEYLQNLGLNGRTDPESFKSCVPLVTHEDLQPYIQRIIDGDISPILTGKPITTISRSSGTTQGKPKFLPFNDELMETTLQIFRTSYAFRNREFPIGKGKALQFIYGSKQSKTKGGLNAGTATTNVYRSSTFKAEMKAMQSQCCSPDEVIFGPDFHQSLYCHLLCGLIFREEIQLVFSTFAHSLVHAFRTFELVWEELCDDIREGVLSSRITVPSIRAAMSKILKPNPELADLIHKKCSGLSNWYGLIPELFPNAKYLSGIMTGSMEHYLKKLRHYAGDLPLMSADYGSSEGWIGANVNPSLPPELATFAVLPNIGYFEFIPQRLGNLESQVLCIEPKPVGLTEVKVGEEYEIIVTNVAGLYRYRLGDVVKVMGFHNSTPELKFICRRNLLLTINIDKNTEKDLQLSVDEAAQLLAEEKQEVVDFTSHVDLSTDPGHYVIFWEVSGEVNDEVLKECCNCLDRSFVDAGYVSARKVNAIGPLELRVVLKGTFQQILDHYLGLGAALSQFKTPRCVGPTNKTVLQILCNNIGKSYFSTAYG

ccccccccHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHcccccHHHHccccccccHHHHHHccccccccccHHHHHHHHHcccccccccccccEEEccccccccccccccccHHHHHHHHHHHHHHHHHHHcccccccccEEEEEEccccccccccccccccccccccccHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHccccccEEEEEcHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHccccHHHHHHHHHHHcccccccccccccccccEEEEEEEcccHHHHHHHHHHHHcccccccccccccccEEEEcccccccccccEEccccccEEEEEEEccccccccccccccccEEcccccccccEEEEEEEccccEEEcccccEEEEEEEEccccEEEEEEEcccEEEEEcccccHHHHHHHHHHHHHHHHHcccEEEEEEEEEEcccccccEEEEEEEcccccHHHHHHHHHHHHHHcccccHHHHHHcccccccEEEEEcccHHHHHHHHHHccccccccccccEEEccccHHHHHHHHccccccccccccc

cccccccccHHHHHHHHHHHHHcHHHHHHHHHHHHHHHcccHHHHHHccccccccHHHHHHcccEEEHHHHHHHHHHHHccccccccccccEEEEEEcccccccccccccccHHHHHHHHHHHHHHHHHHHHccccccccEEEEEEEcccccccccEEcccccccccccHHHcccccccccccccccHEEEcccHHHHHHHHHHHHHHccccHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHcccHHHHHHHHHHHHcccccccHHHHHccccEEEEEEEcccHHHHHHHHHHHcccccEEEccccccccEEEEEcccccccccEEEEEEcccEEEEEEEcccccccccccccccccEEEEEEEEccEEEEEEEEcccEEEEEcccEEEEEcccccccEEEEEEEccEEEEEEcccccHHHHHHHHHHHHHHHHHcccEEEEEEEEcccccccccEEEEEEEcccccHHHHHHHHHHHHHHHHccHHHHccccccccccEEEEEcccHHHHHHHHHHHccccccccccccEcccccHHHHHHHHHccHHHccccccc

mlekmetvDVDELIEEFETITKDAERIQRETLRKILEENASAEYLQnlglngrtdpesfkscvplvthedlqpyiqriidgdispiltgkpittisrssgttqgkpkflpfndELMETTLQIFRTSYafrnrefpigkgkALQFIYgskqsktkgglnagtattnvyrsSTFKAEMKAMqsqccspdevifgpdfhQSLYCHLLCGLIFREEIQLVFSTFAHSLVHAFRTFELVWEELCDDIREGVLSSRITVPSIRAAMSKilkpnpelaDLIHKKcsglsnwyglipelfpnakylsgiMTGSMEHYLKKLRHYagdlplmsadygssegwiganvnpslppelatfavlpnigyfefipqrlgnlesqvlciepkpvgltevkvgEEYEIIVTNVAGLYRYRLGDVVkvmgfhnstpelKFICRRNLLLTINIDKNTEKDLQLSVDEAAQLLAEEKQEVVdftshvdlstdpghYVIFWEVSGEVNDEVLKECCNCldrsfvdagyvsarkvnaigpLELRVVLKGTFQQILDHYLGLGAalsqfktprcvgptnkTVLQILCNNigksyfstayg

mlekmetvdvdelieefetitkdaeRIQRETLRKILEENASAEYLQNLGLNGRTDPESFKSCVPLVTHEDLQPYIQRIIDGDISPILTGKPIttisrssgttqgkPKFLPFNDELMETTLQIFRTSYAFRNREFPIGKGKALQFIYGSKqsktkgglnagtatTNVYRSSTFKAEMKAMQSQCCSPDEVIFGPDFHQSLYCHLLCGLIFREEIQLVFSTFAHSLVHAFRTFELVWEELCDDIREGVLSSRITVPSIRAAMSKILKPNPELADLIHKKCSGLSNWYGLIPELFPNAKYLSGIMTGSMEHYLKKLRHYAGDLPLMSADYGSSEGWIGANVNPSLPPELATFAVLPNIGYFEFIPQRLGNLESQVLCIEPKPVgltevkvgeeYEIIVTNVAGLYRYRLGDVVKVMGFHNSTPELKFICRRNLLLTINIDKNTEKDLQLSVDEAAQLLAEEKQEVVDFTSHVDLSTDPGHYVIFWEVSGEVNDEVLKECCNCLDRSFVDAGYVSARKVNAIGPLELRVVLKGTFQQILDHYLGLGAALSQFKTPRCVGPTNKTVLQILcnnigksyfstayg

MLEKMETVDVDELIEEFETITKDAERIQRETLRKILEENASAEYLQNLGLNGRTDPESFKSCVPLVTHEDLQPYIQRIIDGDISPILTGKPITTISRSSGTTQGKPKFLPFNDELMETTLQIFRTSYAFRNREFPIGKGKALQFIYGSKQSKTKGGLNAGTATTNVYRSSTFKAEMKAMQSQCCSPDEVIFGPDFHQSLYCHLLCGLIFREEIQLVFSTFAHSLVHAFRTFELVWEELCDDIREGVLSSRITVPSIRAAMSKILKPNPELADLIHKKCSGLSNWYGLIPELFPNAKYLSGIMTGSMEHYLKKLRHYAGDLPLMSADYGSSEGWIGANVNPSLPPELATFAVLPNIGYFEFIPQRLGNLESQVLCIEPKPVGLTEVKVGEEYEIIVTNVAGLYRYRLGDVVKVMGFHNSTPELKFICRRNLLLTINIDKNTEKDLQLSVDeaaqllaeekqeVVDFTSHVDLSTDPGHYVIFWEVSGEVNDEVLKECCNCLDRSFVDAGYVSARKVNAIGPLELRVVLKGTFQQILDHYLGLGAALSQFKTPRCVGPTNKTVLQILCNNIGKSYFSTAYG

************LIEEFETIT**********LRKILE***SAEYLQNLGLNGRT**ESFKSCVPLVTHEDLQPYIQRIIDGDISPILTGKPITTI***********KFLPFNDELMETTLQIFRTSYAFRNREFPIGKGKALQFIYGS**************TTNVYR***F******MQSQCCSPDEVIFGPDFHQSLYCHLLCGLIFREEIQLVFSTFAHSLVHAFRTFELVWEELCDDIREGVLSSRITVPSIRAAMSKILKPNPELADLIHKKCSGLSNWYGLIPELFPNAKYLSGIMTGSMEHYLKKLRHYAGDLPLMSADYGSSEGWIGANVNPSLPPELATFAVLPNIGYFEFIPQRLGNLESQVLCIEPKPVGLTEVKVGEEYEIIVTNVAGLYRYRLGDVVKVMGFHNSTPELKFICRRNLLLTINIDKNTEKDLQLSVDEAAQLLAEEKQEVVDFTSHVDLSTDPGHYVIFWEVSGEVNDEVLKECCNCLDRSFVDAGYVSARKVNAIGPLELRVVLKGTFQQILDHYLGLGAALSQFKTPRCVGPTNKTVLQILCNNIGKSYFS****

*LEKMETVDVDELIEEFETITKDAERIQRETLRKILEENASAEYLQNLGLNGRTDPESFKSCVPLVTHEDLQPYIQRIIDGDISPILTGKPITTIS***********FLPFNDELMETTLQIFRTSYAFRNREFPIGKGKALQFIYGSKQSKTKGGLNAGTATTNVYRSSTFKAEMKAMQSQCCSPDEVIFGPDFHQSLYCHLLCGLIFREEIQLVFSTFAHSLVHAFRTFELVWEELCDDIREGVLSSRITVPSIRAAMSKILKPNPELADLIHKKCSGLSNWYGLIPELFPNAKYLSGIMTGSMEHYLKKLRHYAGDLPLMSADYGSSEGWIGANVNPSLPPELATFAVLPNIGYFEFIPQRLGNLESQVLCIEPKPVGLTEVKVGEEYEIIVTNVAGLYRYRLGDVVKVMGFHNSTPELKFICRRNLLLTINIDKNTEKDLQLSVDEAAQLLAEEKQEVVDFTSHVDLSTDPGHYVIFWEVSGEVNDEVLKECCNCLDRSFVDAGYVSARKVNAIGPLELRVVLKGTFQQILD*Y********QF*TPRCVGPTNKTVLQILCNNIGKSYFSTAY*

MLEKMETVDVDELIEEFETITKDAERIQRETLRKILEENASAEYLQNLGLNGRTDPESFKSCVPLVTHEDLQPYIQRIIDGDISPILTGKPITTISRSSGTTQGKPKFLPFNDELMETTLQIFRTSYAFRNREFPIGKGKALQFIYGSKQSKTKGGLNAGTATTNVYRSSTFKA*********CSPDEVIFGPDFHQSLYCHLLCGLIFREEIQLVFSTFAHSLVHAFRTFELVWEELCDDIREGVLSSRITVPSIRAAMSKILKPNPELADLIHKKCSGLSNWYGLIPELFPNAKYLSGIMTGSMEHYLKKLRHYAGDLPLMSADYGSSEGWIGANVNPSLPPELATFAVLPNIGYFEFIPQRLGNLESQVLCIEPKPVGLTEVKVGEEYEIIVTNVAGLYRYRLGDVVKVMGFHNSTPELKFICRRNLLLTINIDKNTEKDLQLSVDEAAQLLAEEKQEVVDFTSHVDLSTDPGHYVIFWEVSGEVNDEVLKECCNCLDRSFVDAGYVSARKVNAIGPLELRVVLKGTFQQILDHYLGLGAALSQFKTPRCVGPTNKTVLQILCNNIGKSYFSTAYG

*LEKMETVDVDELIEEFETITKDAERIQRETLRKILEENASAEYLQNLGLNGRTDPESFKSCVPLVTHEDLQPYIQRIIDGDISPILTGKPITTISRSSGTTQGKPKFLPFNDELMETTLQIFRTSYAFRNREFPIGKGKALQFIYGSKQSKTKGGLNAGTATTNVYRSSTFKAEMKAMQSQCCSPDEVIFGPDFHQSLYCHLLCGLIFREEIQLVFSTFAHSLVHAFRTFELVWEELCDDIREGVLSSRITVPSIRAAMSKILKPNPELADLIHKKCSGLSNWYGLIPELFPNAKYLSGIMTGSMEHYLKKLRHYAGDLPLMSADYGSSEGWIGANVNPSLPPELATFAVLPNIGYFEFIPQRLGN**SQVLCIEPKPVGLTEVKVGEEYEIIVTNVAGLYRYRLGDVVKVMGFHNSTPELKFICRRNLLLTINIDKNTEKDLQLSVDEAAQLLAEEKQEVVDFTSHVDLSTDPGHYVIFWEVSGEVNDEVLKECCNCLDRSFVDAGYVSARKVNAIGPLELRVVLKGTFQQILDHYLGLGAALSQFKTPRCVGPTNKTVLQILCNNIGKSYFSTA**

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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MLEKMETVDxxxxxxxxxxxxxxxxxxxxxTLRKILEENASAEYLQNLGLNGRTDPESFKSCVPLVTHEDLQPYIQRIIDGDISPILTGKPITTISRSSGTTQGKPKFLPFNDELMETTLQIFRTSYAFRNREFPIGKGKALQFIYGSKQSKTKGGLNAGTATTNVYRSSTFKAEMKAMQSQCCSPDEVIFGPDFHQSLYCHLLCGLIFREEIQLVFSTFAHSLVHAFRTFELVWEELCDDIREGVLSSRITVPSIRAAMSKILKPNPELADLIHKKCSGLSNWYGLIPELFPNAKYLSGIMTGSMEHYLKKLRHYAGDLPLMSADYGSSEGWIGANVNPSLPPELATFAVLPNIGYFEFIPQRLGNLESQVLCIEPKPVGLTEVKVGEEYEIIVTNVAGLYRYRLGDVVKVMGFHNSTPELKFICRRNLLLTINIDKNTxxxxxxxxxxxxxxxxxxxxxVVDFTSHVDLSTDPGHYVIFWEVSGEVNDEVLKECCNCLDRSFVDAGYVSARKVNAIGPLELRVVLKGTFQQILDHYLGLGAALSQFKTPRCVGPTNKTVLQILCNNIGKSYFSTAYG

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		579	2.2.26 [Sep-21-2011]
Q6I581		581	Probable indole-3-acetic	yes	no	0.993	0.989	0.694	0.0
Q9SKE2		575	Jasmonic acid-amido synth	yes	no	0.987	0.994	0.674	0.0
Q53P49		613	Probable indole-3-acetic	no	no	0.998	0.942	0.524	0.0
Q5NAZ7		462	Probable indole-3-acetic	no	no	0.734	0.919	0.596	1e-147
O22190		595	Indole-3-acetic acid-amid	no	no	0.979	0.952	0.405	1e-125
O82333		590	Probable indole-3-acetic	no	no	0.941	0.923	0.401	1e-120
O81829		612	Indole-3-acetic acid-amid	no	no	0.960	0.908	0.397	1e-119
Q9LQ68		597	Indole-3-acetic acid-amid	no	no	0.944	0.916	0.408	1e-118
Q9LSQ4		612	Indole-3-acetic acid-amid	no	no	0.955	0.903	0.393	1e-117
P0C0M2		614	Probable indole-3-acetic	no	no	0.967	0.912	0.383	1e-117

>sp\|Q6I581\|GH35_ORYSJ Probable indole-3-acetic acid-amido synthetase GH3.5 OS=Oryza sativa subsp. japonica GN=GH3.5 PE=2 SV=1	Back alignment and function desciption

 Score =  871 bits (2251), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 403/580 (69%), Positives = 489/580 (84%), Gaps = 5/580 (0%)

Query: 5   METVDVDELIEEFETITKDAERIQRETLRKILEENASAEYLQNLGLNGRTDPESFKSCVP 64
           M     +E I EFE +T+DA R+Q++TL+KILE NASAEYLQN GL GRTD ES+KSC+P
Sbjct: 1   MTICSCEETINEFEMLTRDAARVQKDTLKKILEINASAEYLQNFGLGGRTDAESYKSCIP 60

Query: 65  LVTHEDLQPYIQRIIDGDISPILTGKPITTISRSSGTTQGKPKFLPFNDELMETTLQIFR 124
           L  H D++PYIQRI+DGD SP++TG+PIT +S SSGTT GKPKF+PFNDEL+ETTLQI+R
Sbjct: 61  LCVHNDIEPYIQRIVDGDTSPVVTGEPITNLSLSSGTTHGKPKFIPFNDELLETTLQIYR 120

Query: 125 TSYAFRNREFPIGKGKALQFIYGSKQSKTKGGLNAGTATTNVYRSSTFKAEMKAMQSQCC 184
           TSYAFRNRE+PIG+GKALQF+YGSKQ  TKGG+ A TATTN+YR   +K  MK +QSQCC
Sbjct: 121 TSYAFRNREYPIGQGKALQFVYGSKQVITKGGILATTATTNLYRRQRYKEGMKDIQSQCC 180

Query: 185 SPDEVIFGPDFHQSLYCHLLCGLIFREEIQLVFSTFAHSLVHAFRTFELVWEELCDDIRE 244
           SPDEVIFGPDFHQSLYCHLLCGLI+ EE+  VFSTFAHSLVHAF+TFE VWE+LC DIR+
Sbjct: 181 SPDEVIFGPDFHQSLYCHLLCGLIYSEEVHSVFSTFAHSLVHAFQTFEEVWEDLCTDIRD 240

Query: 245 GVLSSRITVPSIRAAMSKILKPNPELADLIHKKCSGLSNWYGLIPELFPNAKYLSGIMTG 304
           GVLS ++T PSIR A+SKILKPNPELAD I+KKC GLSNWYG+IP L+PNAKY+ GIMTG
Sbjct: 241 GVLSKKVTAPSIREAVSKILKPNPELADSIYKKCIGLSNWYGVIPALWPNAKYVYGIMTG 300

Query: 305 SMEHYLKKLRHYAGDLPLMSADYGSSEGWIGANVNPSLPPELATFAVLPNIGYFEFIP-- 362
           SME YLKKLRHYAG+LPL+SADYG+SEGW+G+N++P++PPE  T+AVLP +GYFEFIP  
Sbjct: 301 SMEPYLKKLRHYAGNLPLISADYGASEGWVGSNIDPTVPPEQVTYAVLPQVGYFEFIPLE 360

Query: 363 QRLGNL---ESQVLCIEPKPVGLTEVKVGEEYEIIVTNVAGLYRYRLGDVVKVMGFHNST 419
           + +G      + +  IE  PVGLTEV+VG+ YE+++TN AGLYRYRLGDVVK+  FHNST
Sbjct: 361 KPIGEETENSASIHYIESDPVGLTEVEVGKIYEVVITNFAGLYRYRLGDVVKIARFHNST 420

Query: 420 PELKFICRRNLLLTINIDKNTEKDLQLSVDEAAQLLAEEKQEVVDFTSHVDLSTDPGHYV 479
           PEL+FICRR+L+L+INIDKNTEKDLQL+V+EA++ L  EK EV+DFTS V+ S+DPG YV
Sbjct: 421 PELQFICRRSLVLSINIDKNTEKDLQLAVEEASKFLEGEKLEVMDFTSFVERSSDPGRYV 480

Query: 480 IFWEVSGEVNDEVLKECCNCLDRSFVDAGYVSARKVNAIGPLELRVVLKGTFQQILDHYL 539
           IFWE+SG+ +DEVL  C N LD +F+DAGY  +RK+  IGPLELR++ KGTF++ILDH+L
Sbjct: 481 IFWELSGDASDEVLSSCANALDLAFIDAGYTGSRKIKTIGPLELRILRKGTFKEILDHFL 540

Query: 540 GLGAALSQFKTPRCVGPTNKTVLQILCNNIGKSYFSTAYG 579
            LG A+SQFKTPR V P+N  VLQIL  N+ +SYFSTAYG
Sbjct: 541 SLGGAVSQFKTPRFVNPSNSKVLQILSRNVTQSYFSTAYG 580

May catalyze the synthesis of indole-3-acetic acid (IAA)-amino acid conjugates, providing a mechanism for the plant to cope with the presence of excess auxin.
Oryza sativa subsp. japonica (taxid: 39947)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -

>sp\|Q9SKE2\|JAR1_ARATH Jasmonic acid-amido synthetase JAR1 OS=Arabidopsis thaliana GN=JAR1 PE=1 SV=2	Back alignment and function description

>sp\|Q53P49\|GH312_ORYSJ Probable indole-3-acetic acid-amido synthetase GH3.12 OS=Oryza sativa subsp. japonica GN=GH3.12 PE=2 SV=1	Back alignment and function description

>sp\|Q5NAZ7\|GH33_ORYSJ Probable indole-3-acetic acid-amido synthetase GH3.3 OS=Oryza sativa subsp. japonica GN=GH3.3 PE=2 SV=2	Back alignment and function description

>sp\|O22190\|GH33_ARATH Indole-3-acetic acid-amido synthetase GH3.3 OS=Arabidopsis thaliana GN=GH3.3 PE=1 SV=1	Back alignment and function description

>sp\|O82333\|GH31_ARATH Probable indole-3-acetic acid-amido synthetase GH3.1 OS=Arabidopsis thaliana GN=GH3.1 PE=2 SV=1	Back alignment and function description

>sp\|O81829\|GH35_ARATH Indole-3-acetic acid-amido synthetase GH3.5 OS=Arabidopsis thaliana GN=GH3.5 PE=1 SV=1	Back alignment and function description

>sp\|Q9LQ68\|GH34_ARATH Indole-3-acetic acid-amido synthetase GH3.4 OS=Arabidopsis thaliana GN=GH3.4 PE=1 SV=1	Back alignment and function description

>sp\|Q9LSQ4\|GH36_ARATH Indole-3-acetic acid-amido synthetase GH3.6 OS=Arabidopsis thaliana GN=GH3.6 PE=1 SV=1	Back alignment and function description

>sp\|P0C0M2\|GH32_ORYSJ Probable indole-3-acetic acid-amido synthetase GH3.2 OS=Oryza sativa subsp. japonica GN=GH3.2 PE=2 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		579
307136360		575	auxin-regulated protein [Cucumis melo su	0.993	1.0	0.785	0.0
449432068		572	PREDICTED: probable indole-3-acetic acid	0.987	1.0	0.780	0.0
224127866		576	GH3 family protein [Populus trichocarpa]	0.993	0.998	0.780	0.0
118486804		576	unknown [Populus trichocarpa]	0.989	0.994	0.776	0.0
224064181		576	GH3 family protein [Populus trichocarpa]	0.989	0.994	0.776	0.0
383464620		576	auxin-responsive GH3 family protein [Hev	0.991	0.996	0.782	0.0
357512525		676	GH3 family protein [Medicago truncatula]	1.0	0.856	0.765	0.0
356571222		587	PREDICTED: probable indole-3-acetic acid	0.998	0.984	0.760	0.0
86212374		577	jasmonic acid-amino acid-conjugating enz	0.989	0.993	0.756	0.0
356506052		571	PREDICTED: probable indole-3-acetic acid	0.984	0.998	0.759	0.0

>gi\|307136360\|gb\|ADN34174.1\| auxin-regulated protein [Cucumis melo subsp. melo]	Back alignment and taxonomy information

 Score =  965 bits (2494), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 454/578 (78%), Positives = 516/578 (89%), Gaps = 3/578 (0%)

Query: 1   MLEKMETVDVDELIEEFETITKDAERIQRETLRKILEENASAEYLQNLGLNGRTDPESFK 60
           MLEKME  D +++IE+FE +T+DAER+QRETL+KILEEN SAEYLQNLGLNGRTDP+SFK
Sbjct: 1   MLEKMEAFDGEKVIEQFEEMTRDAERVQRETLKKILEENGSAEYLQNLGLNGRTDPQSFK 60

Query: 61  SCVPLVTHEDLQPYIQRIIDGDISPILTGKPITTISRSSGTTQGKPKFLPFNDELMETTL 120
            CVPLV+H+DL+ YIQRI DGD SPILTGKPI TIS SSGTT+G+PK +PFNDEL+ETT+
Sbjct: 61  DCVPLVSHDDLESYIQRIADGDSSPILTGKPIKTISLSSGTTKGRPKLIPFNDELLETTM 120

Query: 121 QIFRTSYAFRNREFPIGKGKALQFIYGSKQSKTKGGLNAGTATTNVYRSSTFKAEMKAMQ 180
           QI+RTS+AFRN+E P+GKGKALQFIY SKQ KT GGL AGTATTNVYRS+ FK+ M+A+Q
Sbjct: 121 QIYRTSFAFRNKEVPLGKGKALQFIYSSKQFKTNGGLAAGTATTNVYRSAQFKSTMRAIQ 180

Query: 181 SQCCSPDEVIFGPDFHQSLYCHLLCGLIFREEIQLVFSTFAHSLVHAFRTFELVWEELCD 240
           SQCCSPDEVIFGPDFHQSLYCHLLCGLIFR+E++ VFSTFAHS+VH+FRTFE VWEELC 
Sbjct: 181 SQCCSPDEVIFGPDFHQSLYCHLLCGLIFRDEVEFVFSTFAHSIVHSFRTFEQVWEELCS 240

Query: 241 DIREGVLSSRITVPSIRAAMSKILKPNPELADLIHKKCSGLSNWYGLIPELFPNAKYLSG 300
           +IR+GVLSS +T PSIRAAMSK+LKPNPELADLI++KC GLSNWYGLIPELFPNAKY+ G
Sbjct: 241 NIRDGVLSSWVTAPSIRAAMSKLLKPNPELADLIYRKCEGLSNWYGLIPELFPNAKYIYG 300

Query: 301 IMTGSMEHYLKKLRHYAGDLPLMSADYGSSEGWIGANVNPSLPPELATFAVLPNIGYFEF 360
           IMTGSME YLKKLRHYAG LPLMSADYGSSEGW+GANVNP LPPE+ATFAVLPNIGYFEF
Sbjct: 301 IMTGSMEPYLKKLRHYAGHLPLMSADYGSSEGWVGANVNPMLPPEMATFAVLPNIGYFEF 360

Query: 361 IPQRLGNLESQVLCIEPKPVGLTEVKVGEEYEIIVTNVAGLYRYRLGDVVKVMGFHNSTP 420
           IP +  N + Q      KP+GLTEVK+GEEYEIIVTNVAGLYRYRLGD VKVMGFHNSTP
Sbjct: 361 IPLK-ENAQGQHQ--RNKPIGLTEVKIGEEYEIIVTNVAGLYRYRLGDAVKVMGFHNSTP 417

Query: 421 ELKFICRRNLLLTINIDKNTEKDLQLSVDEAAQLLAEEKQEVVDFTSHVDLSTDPGHYVI 480
           ELKFICRRNLLL+INIDK TEKDLQL+V+ A  +LA EK EVVDFTS+VD+S +PGHYVI
Sbjct: 418 ELKFICRRNLLLSINIDKITEKDLQLAVEAAGNVLAAEKLEVVDFTSYVDVSREPGHYVI 477

Query: 481 FWEVSGEVNDEVLKECCNCLDRSFVDAGYVSARKVNAIGPLELRVVLKGTFQQILDHYLG 540
           FWE+SGE   EVL EC NCLDR+F+DAGY+S+RKVNAIG LELRVV KGTF +I+DH+L 
Sbjct: 478 FWEISGEAKGEVLGECSNCLDRAFLDAGYMSSRKVNAIGALELRVVRKGTFHKIMDHHLS 537

Query: 541 LGAALSQFKTPRCVGPTNKTVLQILCNNIGKSYFSTAY 578
           LGAA+SQ+KTPRCV PTN  VLQILC+N+  SYFSTAY
Sbjct: 538 LGAAVSQYKTPRCVIPTNTAVLQILCSNVVNSYFSTAY 575

Source: Cucumis melo subsp. melo

Species: Cucumis melo

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|449432068\|ref\|XP_004133822.1\| PREDICTED: probable indole-3-acetic acid-amido synthetase GH3.5-like [Cucumis sativus] gi\|449477906\|ref\|XP_004155158.1\| PREDICTED: probable indole-3-acetic acid-amido synthetase GH3.5-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|224127866\|ref\|XP_002320183.1\| GH3 family protein [Populus trichocarpa] gi\|222860956\|gb\|EEE98498.1\| GH3 family protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|118486804\|gb\|ABK95237.1\| unknown [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|224064181\|ref\|XP_002301399.1\| GH3 family protein [Populus trichocarpa] gi\|222843125\|gb\|EEE80672.1\| GH3 family protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|383464620\|gb\|AFH35030.1\| auxin-responsive GH3 family protein [Hevea brasiliensis]	Back alignment and taxonomy information

>gi\|357512525\|ref\|XP_003626551.1\| GH3 family protein [Medicago truncatula] gi\|355501566\|gb\|AES82769.1\| GH3 family protein [Medicago truncatula]	Back alignment and taxonomy information

>gi\|356571222\|ref\|XP_003553778.1\| PREDICTED: probable indole-3-acetic acid-amido synthetase GH3.5-like [Glycine max]	Back alignment and taxonomy information

>gi\|86212374\|gb\|ABC87760.1\| jasmonic acid-amino acid-conjugating enzyme [Nicotiana attenuata]	Back alignment and taxonomy information

>gi\|356506052\|ref\|XP_003521802.1\| PREDICTED: probable indole-3-acetic acid-amido synthetase GH3.5-like [Glycine max]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		579
UNIPROTKB\|Q6I581		581	GH3.5 "Probable indole-3-aceti	0.993	0.989	0.684	7.4e-224
TAIR\|locus:2125571		591	DFL2 "DWARF IN LIGHT 2" [Arabi	0.986	0.966	0.522	2.1e-157
UNIPROTKB\|Q5NAZ7		462	GH3.3 "Probable indole-3-aceti	0.728	0.913	0.603	3.6e-137
TAIR\|locus:2058588		595	GH3.3 [Arabidopsis thaliana (t	0.979	0.952	0.398	5.8e-114
UNIPROTKB\|Q53P49		613	GH3.12 "Probable indole-3-acet	0.682	0.644	0.509	1.4e-112
TAIR\|locus:2131739		612	WES1 [Arabidopsis thaliana (ta	0.960	0.908	0.393	1.1e-110
TAIR\|locus:2060500		590	GH3.1 "AT2G14960" [Arabidopsis	0.937	0.920	0.397	2.1e-109
TAIR\|locus:2147314		612	DFL1 "DWARF IN LIGHT 1" [Arabi	0.963	0.911	0.388	2.6e-109
TAIR\|locus:2202832		597	GH3.4 [Arabidopsis thaliana (t	0.943	0.914	0.401	3.5e-107
UNIPROTKB\|P0C0M2		614	GH3.2 "Probable indole-3-aceti	0.967	0.912	0.380	9.2e-107

UNIPROTKB\|Q6I581 GH3.5 "Probable indole-3-acetic acid-amido synthetase GH3.5" [Oryza sativa Japonica Group (taxid:39947)]	Back alignment and assigned GO terms

 Score = 2161 (765.8 bits), Expect = 7.4e-224, P = 7.4e-224
 Identities = 397/580 (68%), Positives = 481/580 (82%)

Query:     5 METVDVDELIEEFETITKDAERIQRETLRKILEENASAEYLQNLGLNGRTDPESFKSCVP 64
             M     +E I EFE +T+DA R+Q++TL+KILE NASAEYLQN GL GRTD ES+KSC+P
Sbjct:     1 MTICSCEETINEFEMLTRDAARVQKDTLKKILEINASAEYLQNFGLGGRTDAESYKSCIP 60

Query:    65 LVTHEDLQPYIQRIIDGDISPILTGKPITTISRSSGTTQGKPKFLPFNDELMETTLQIFR 124
             L  H D++PYIQRI+DGD SP++TG+PIT +S SSGTT GKPKF+PFNDEL+ETTLQI+R
Sbjct:    61 LCVHNDIEPYIQRIVDGDTSPVVTGEPITNLSLSSGTTHGKPKFIPFNDELLETTLQIYR 120

Query:   125 TSYAFRNREFPIGKGKALQFIYGSKQSKTKGGLNAGTATTNVYRSSTFKAEMKAMQSQCC 184
             TSYAFRNRE+PIG+GKALQF+YGSKQ  TKGG+ A TATTN+YR   +K  MK +QSQCC
Sbjct:   121 TSYAFRNREYPIGQGKALQFVYGSKQVITKGGILATTATTNLYRRQRYKEGMKDIQSQCC 180

Query:   185 SPDEVIFGPDFHQSLYCHLLCGLIFREEIQLVFSTFAHSLVHAFRTFELVWEELCDDIRE 244
             SPDEVIFGPDFHQSLYCHLLCGLI+ EE+  VFSTFAHSLVHAF+TFE VWE+LC DIR+
Sbjct:   181 SPDEVIFGPDFHQSLYCHLLCGLIYSEEVHSVFSTFAHSLVHAFQTFEEVWEDLCTDIRD 240

Query:   245 GVLSSRITVPSIRAAMSKILKPNPELADLIHKKCSGLSNWYGLIPELFPNAKYLSGIMTG 304
             GVLS ++T PSIR A+SKILKPNPELAD I+KKC GLSNWYG+IP L+PNAKY+ GIMTG
Sbjct:   241 GVLSKKVTAPSIREAVSKILKPNPELADSIYKKCIGLSNWYGVIPALWPNAKYVYGIMTG 300

Query:   305 SMEHYLKKLRHYAGDLPLMSADYGSSEGWIGANVNPSLPPELATFAVLPNIGYFEFIP-- 362
             SME YLKKLRHYAG+LPL+SADYG+SEGW+G+N++P++PPE  T+AVLP +GYFEFIP  
Sbjct:   301 SMEPYLKKLRHYAGNLPLISADYGASEGWVGSNIDPTVPPEQVTYAVLPQVGYFEFIPLE 360

Query:   363 QRLGNL---ESQVLCIEPKPVGLTEVKVGEEYEIIVTNVAGLYRYRLGDVVKVMGFHNST 419
             + +G      + +  IE  PVGLTEV+VG+ YE+++TN AGLYRYRLGDVVK+  FHNST
Sbjct:   361 KPIGEETENSASIHYIESDPVGLTEVEVGKIYEVVITNFAGLYRYRLGDVVKIARFHNST 420

Query:   420 PELKFICRRNLLLTINIDKNTEKDLQLSVDXXXXXXXXXXXXVVDFTSHVDLSTDPGHYV 479
             PEL+FICRR+L+L+INIDKNTEKDLQL+V+            V+DFTS V+ S+DPG YV
Sbjct:   421 PELQFICRRSLVLSINIDKNTEKDLQLAVEEASKFLEGEKLEVMDFTSFVERSSDPGRYV 480

Query:   480 IFWEVSGEVNDEVLKECCNCLDRSFVDAGYVSARKVNAIGPLELRVVLKGTFQQILDHYL 539
             IFWE+SG+ +DEVL  C N LD +F+DAGY  +RK+  IGPLELR++ KGTF++ILDH+L
Sbjct:   481 IFWELSGDASDEVLSSCANALDLAFIDAGYTGSRKIKTIGPLELRILRKGTFKEILDHFL 540

Query:   540 GLGAALSQFKTPRCVGPTNKTVLQILCNNIGKSYFSTAYG 579
              LG A+SQFKTPR V P+N  VLQIL  N+ +SYFSTAYG
Sbjct:   541 SLGGAVSQFKTPRFVNPSNSKVLQILSRNVTQSYFSTAYG 580

GO:0009416 "response to light stimulus" evidence=IC

GO:0009733 "response to auxin stimulus" evidence=IC

TAIR\|locus:2125571 DFL2 "DWARF IN LIGHT 2" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

UNIPROTKB\|Q5NAZ7 GH3.3 "Probable indole-3-acetic acid-amido synthetase GH3.3" [Oryza sativa Japonica Group (taxid:39947)]	Back alignment and assigned GO terms

TAIR\|locus:2058588 GH3.3 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

UNIPROTKB\|Q53P49 GH3.12 "Probable indole-3-acetic acid-amido synthetase GH3.12" [Oryza sativa Japonica Group (taxid:39947)]	Back alignment and assigned GO terms

TAIR\|locus:2131739 WES1 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2060500 GH3.1 "AT2G14960" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2147314 DFL1 "DWARF IN LIGHT 1" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2202832 GH3.4 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

UNIPROTKB\|P0C0M2 GH3.2 "Probable indole-3-acetic acid-amido synthetase GH3.2" [Oryza sativa Japonica Group (taxid:39947)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9SKE2	JAR1_ARATH	6, ., 3, ., 2, ., -	0.6746	0.9879	0.9947	yes	no
Q6I581	GH35_ORYSJ	6, ., 3, ., 2, ., -	0.6948	0.9930	0.9896	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	6.3.2	LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		579
pfam03321		513	pfam03321, GH3, GH3 auxin-responsive promoter	0.0
PLN02620		612	PLN02620, PLN02620, indole-3-acetic acid-amido syn	1e-157
PLN02249		597	PLN02249, PLN02249, indole-3-acetic acid-amido syn	1e-152
PLN02247		606	PLN02247, PLN02247, indole-3-acetic acid-amido syn	1e-149

>gnl\|CDD\|217492 pfam03321, GH3, GH3 auxin-responsive promoter	Back alignment and domain information

 Score =  588 bits (1519), Expect = 0.0
 Identities = 229/561 (40%), Positives = 316/561 (56%), Gaps = 60/561 (10%)

Query: 14  IEEFETITKDAERIQRETLRKILEENASAEYLQNLGLNGRTDPESFKSCVPLVTHEDLQP 73
           ++E E  T +A  +Q E LR+ILE NA  EY +  G +G T  + FK  VP+VT+EDL+P
Sbjct: 3   LKEIELFTSNAVEVQEEVLREILERNADTEYGKKYGFSGITSYDDFKKRVPVVTYEDLKP 62

Query: 74  YIQRIIDGDISPILTGKPITTISRSSGTTQGKPKFLPFNDELMETTLQIFRTSYAF--RN 131
           YI+RI +G+ S IL   PIT  + SSGTT GK KF+P  DEL+E    +   +      N
Sbjct: 63  YIERIANGEPS-ILWPGPITYFALSSGTTGGKSKFIPVTDELLERFHFLGALAVLLLYLN 121

Query: 132 REFPI----GKGKALQFIYGSKQSKTKGGLNAGTATTNVYR--SSTFKAEMKAMQSQCCS 185
              P     GK   L   +   + KT GG+ AG  +T +YR     FK           S
Sbjct: 122 NNPPGLFFEGKSLGLGGSFVKPELKTPGGIPAGDLSTILYRNLPFWFK--------LYTS 173

Query: 186 PDEVIFGPDFHQSLYCHLLCGLIFREEIQLVFSTFAHSLVHAFRTFELVWEELCDDIREG 245
           PDEVI   D  QS YC LLCGLI RE++  +    A  LV   R  E  W+ELC DIR G
Sbjct: 174 PDEVILCIDDWQSKYCALLCGLI-REDVGRISGVPAWMLVLLIRFLEKHWKELCTDIRTG 232

Query: 246 VLSSRITVPSIRAAMSKILKPNPELADLIHKKCSGLSNWYGLIPELFPNAKYLSGIMTGS 305
            L                 +PNPELADLI ++CS +      I EL+PN KY+     GS
Sbjct: 233 TL-----------------RPNPELADLIEQECSKI------IKELWPNLKYVFVWGGGS 269

Query: 306 MEHYLKKLRHYAGDLPLMSADYGSSEGWIGANVNPSLPPELATFAVLPNIGYFEFIPQRL 365
           ME Y  KL    G LPL S  Y +SEG+ G N++P    E  ++ ++PN G+FEFIP   
Sbjct: 270 MEPYRPKLEKLLGGLPLYSETYAASEGFFGINLDP----EDVSYTLMPNSGFFEFIP--- 322

Query: 366 GNLESQVLCIEPKPVGLTEVKVGEEYEIIVTNVAGLYRYRLGDVVKVMGFHNSTPELKFI 425
                +    +PK V L EV++G+ YE+++T  AGLYRYR+GDVV+V GF+N TP+ +F+
Sbjct: 323 ---VDEDGDEDPKIVDLVEVELGKNYELVITTFAGLYRYRIGDVVRVTGFYNYTPQFEFV 379

Query: 426 CRRNLLLTINIDKNTEKDLQLSVDEAAQLLAEEKQEVVDFTSHVDLSTDPGHYVIFWEVS 485
            R   +L++  +K TE++L+ +V  A   L     E+V++TS  D ST+PGHYV +WE+ 
Sbjct: 380 GRTKHVLSLFGEKLTEEELEKAVKNA---LESTGLEIVEYTSAPDTSTEPGHYVHYWEL- 435

Query: 486 GEVNDEVLKECCNCLDRSF-VDAGYVSARKVNAIGPLELRVVLKGTFQQILDHYLG-LGA 543
            E   EVL+EC   LD +   ++ Y  AR+  ++GPLE+RVV  GTF + +  + G LG 
Sbjct: 436 -EFKPEVLEECARALDEALQENSDYRRAREKGSLGPLEIRVVPPGTFYEWMKAFKGKLGG 494

Query: 544 ALSQFKTPRCVGPTNKTVLQI 564
           ++ Q+K PR      +  L+I
Sbjct: 495 SIGQYKVPRLS--KEREYLEI 513

Length = 513

>gnl\|CDD\|166261 PLN02620, PLN02620, indole-3-acetic acid-amido synthetase	Back alignment and domain information

>gnl\|CDD\|177891 PLN02249, PLN02249, indole-3-acetic acid-amido synthetase	Back alignment and domain information

>gnl\|CDD\|165890 PLN02247, PLN02247, indole-3-acetic acid-amido synthetase	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		579
PLN02620		612	indole-3-acetic acid-amido synthetase	100.0
PLN02247		606	indole-3-acetic acid-amido synthetase	100.0
PLN02249		597	indole-3-acetic acid-amido synthetase	100.0
PF03321		528	GH3: GH3 auxin-responsive promoter; InterPro: IPR0	100.0
COG1541		438	PaaK Coenzyme F390 synthetase [Coenzyme metabolism	99.96
TIGR03335		445	F390_ftsA coenzyme F390 synthetase. This enzyme, c	99.96
TIGR02155		422	PA_CoA_ligase phenylacetate-CoA ligase. Phenylacet	99.94
TIGR02304		430	aden_form_hyp probable adenylate-forming enzyme. M	99.9
PRK07529		632	AMP-binding domain protein; Validated	99.55
PRK06334		539	long chain fatty acid--[acyl-carrier-protein] liga	99.55
TIGR02188		625	Ac_CoA_lig_AcsA acetate--CoA ligase. This model de	99.53
COG1021		542	EntE Peptide arylation enzymes [Secondary metaboli	99.53
PRK09274		552	peptide synthase; Provisional	99.53
PRK00174		637	acetyl-CoA synthetase; Provisional	99.52
PRK07788		549	acyl-CoA synthetase; Validated	99.5
PLN02574		560	4-coumarate--CoA ligase-like	99.49
PTZ00237		647	acetyl-CoA synthetase; Provisional	99.49
PRK13295		547	cyclohexanecarboxylate-CoA ligase; Reviewed	99.48
PRK04319		570	acetyl-CoA synthetase; Provisional	99.48
PRK05677		562	long-chain-fatty-acid--CoA ligase; Validated	99.48
TIGR01734		502	D-ala-DACP-lig D-alanine--poly(phosphoribitol) lig	99.47
TIGR02316		628	propion_prpE propionate--CoA ligase. This family c	99.46
COG0318		534	CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid l	99.46
PRK06155		542	crotonobetaine/carnitine-CoA ligase; Provisional	99.46
PRK06060		705	acyl-CoA synthetase; Validated	99.46
PRK07514		504	malonyl-CoA synthase; Validated	99.45
PRK05605		573	long-chain-fatty-acid--CoA ligase; Validated	99.44
PLN02654		666	acetate-CoA ligase	99.44
TIGR03205		541	pimA dicarboxylate--CoA ligase PimA. PimA, a membe	99.43
PRK09088		488	acyl-CoA synthetase; Validated	99.43
PRK08314		546	long-chain-fatty-acid--CoA ligase; Validated	99.43
PRK06164		540	acyl-CoA synthetase; Validated	99.42
PRK10524		629	prpE propionyl-CoA synthetase; Provisional	99.42
PRK03584		655	acetoacetyl-CoA synthetase; Provisional	99.42
PLN03051		499	acyl-activating enzyme; Provisional	99.42
PRK06145		497	acyl-CoA synthetase; Validated	99.41
PRK07638		487	acyl-CoA synthetase; Validated	99.41
PRK13382		537	acyl-CoA synthetase; Provisional	99.41
PRK04813		503	D-alanine--poly(phosphoribitol) ligase subunit 1;	99.41
PRK08633		1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.41
PRK05852		534	acyl-CoA synthetase; Validated	99.4
PRK06187		521	long-chain-fatty-acid--CoA ligase; Validated	99.4
PRK12583		558	acyl-CoA synthetase; Provisional	99.39
PRK07656		513	long-chain-fatty-acid--CoA ligase; Validated	99.39
PRK07786		542	long-chain-fatty-acid--CoA ligase; Validated	99.39
PRK08316		523	acyl-CoA synthetase; Validated	99.38
TIGR03208		538	cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase.	99.38
PLN02246		537	4-coumarate--CoA ligase	99.38
COG0365		528	Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid l	99.38
PRK05851		525	long-chain-fatty-acid--[acyl-carrier-protein] liga	99.38
PLN02860		563	o-succinylbenzoate-CoA ligase	99.38
PLN02736		651	long-chain acyl-CoA synthetase	99.37
PRK07769		631	long-chain-fatty-acid--CoA ligase; Validated	99.37
PRK12492		562	long-chain-fatty-acid--CoA ligase; Provisional	99.37
TIGR03098		515	ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosor	99.36
PLN02614		666	long-chain acyl-CoA synthetase	99.36
COG1022		613	FAA1 Long-chain acyl-CoA synthetases (AMP-forming)	99.36
PRK10946		536	entE enterobactin synthase subunit E; Provisional	99.35
PRK08974		560	long-chain-fatty-acid--CoA ligase; Validated	99.35
PRK07059		557	Long-chain-fatty-acid--CoA ligase; Validated	99.35
PRK13383		516	acyl-CoA synthetase; Provisional	99.35
PRK07470		528	acyl-CoA synthetase; Validated	99.35
TIGR01733		408	AA-adenyl-dom amino acid adenylation domain. This	99.34
PRK07867		529	acyl-CoA synthetase; Validated	99.34
PLN02387		696	long-chain-fatty-acid-CoA ligase family protein	99.34
TIGR02275		527	DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase. Prot	99.33
PRK07768		545	long-chain-fatty-acid--CoA ligase; Validated	99.33
PRK08315		559	AMP-binding domain protein; Validated	99.33
PRK08751		560	putative long-chain fatty acyl CoA ligase; Provisi	99.33
PRK10252		1296	entF enterobactin synthase subunit F; Provisional	99.33
PRK06839		496	acyl-CoA synthetase; Validated	99.32
KOG1176		537	consensus Acyl-CoA synthetase [Lipid transport and	99.32
TIGR01217		652	ac_ac_CoA_syn acetoacetyl-CoA synthase. This enzym	99.31
PRK07787		471	acyl-CoA synthetase; Validated	99.31
TIGR03443		1389	alpha_am_amid L-aminoadipate-semialdehyde dehydrog	99.31
PRK08043		718	bifunctional acyl-[acyl carrier protein] synthetas	99.31
PLN02330		546	4-coumarate--CoA ligase-like 1	99.3
PRK13388		540	acyl-CoA synthetase; Provisional	99.3
PRK12467		3956	peptide synthase; Provisional	99.3
PRK12406		509	long-chain-fatty-acid--CoA ligase; Provisional	99.29
PRK12467		3956	peptide synthase; Provisional	99.29
PLN02861		660	long-chain-fatty-acid-CoA ligase	99.28
PRK05857		540	acyl-CoA synthetase; Validated	99.28
TIGR02262		508	benz_CoA_lig benzoate-CoA ligase family. Character	99.28
PRK06188		524	acyl-CoA synthetase; Validated	99.28
PRK06710		563	long-chain-fatty-acid--CoA ligase; Validated	99.27
PRK06087		547	short chain acyl-CoA synthetase; Reviewed	99.27
PRK12316		5163	peptide synthase; Provisional	99.27
PTZ00342		746	acyl-CoA synthetase; Provisional	99.26
PRK08279		600	long-chain-acyl-CoA synthetase; Validated	99.26
PRK03640		483	O-succinylbenzoic acid--CoA ligase; Provisional	99.26
PRK08180		614	feruloyl-CoA synthase; Reviewed	99.25
PRK12316		5163	peptide synthase; Provisional	99.25
PRK09192		579	acyl-CoA synthetase; Validated	99.24
PRK05691		4334	peptide synthase; Validated	99.23
PRK07824		358	O-succinylbenzoic acid--CoA ligase; Provisional	99.23
PRK08276		502	long-chain-fatty-acid--CoA ligase; Validated	99.23
PRK08308		414	acyl-CoA synthetase; Validated	99.22
PLN03052		728	acetate--CoA ligase; Provisional	99.22
PRK08008		517	caiC putative crotonobetaine/carnitine-CoA ligase;	99.22
PLN03102		579	acyl-activating enzyme; Provisional	99.21
PRK06814		1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.21
KOG1177		596	consensus Long chain fatty acid acyl-CoA ligase [L	99.21
PRK05850		578	acyl-CoA synthetase; Validated	99.2
TIGR01923		436	menE O-succinylbenzoate-CoA ligase. This model rep	99.19
PF00501		417	AMP-binding: AMP-binding enzyme; InterPro: IPR0008	99.18
PLN02430		660	long-chain-fatty-acid-CoA ligase	99.17
PRK07008		539	long-chain-fatty-acid--CoA ligase; Validated	99.16
PRK05691		4334	peptide synthase; Validated	99.15
PRK12582		624	acyl-CoA synthetase; Provisional	99.15
KOG1256		691	consensus Long-chain acyl-CoA synthetases (AMP-for	99.15
PTZ00216		700	acyl-CoA synthetase; Provisional	99.15
PRK05620		576	long-chain-fatty-acid--CoA ligase; Validated	99.14
PRK07445		452	O-succinylbenzoic acid--CoA ligase; Reviewed	99.13
PRK06178		567	acyl-CoA synthetase; Validated	99.12
KOG1175		626	consensus Acyl-CoA synthetase [Lipid transport and	99.1
PRK06018		542	putative acyl-CoA synthetase; Provisional	99.09
PRK09029		458	O-succinylbenzoic acid--CoA ligase; Provisional	98.99
PRK08162		545	acyl-CoA synthetase; Validated	98.98
PRK12476		612	putative fatty-acid--CoA ligase; Provisional	98.95
PLN02479		567	acetate-CoA ligase	98.9
PRK13391		511	acyl-CoA synthetase; Provisional	98.88
TIGR02372		386	4_coum_CoA_lig 4-coumarate--CoA ligase, photoactiv	98.87
PRK07868		994	acyl-CoA synthetase; Validated	98.81
PRK13390		501	acyl-CoA synthetase; Provisional	98.8
PRK07798		533	acyl-CoA synthetase; Validated	98.77
KOG1180		678	consensus Acyl-CoA synthetase [Lipid transport and	98.69
PF04443		365	LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR	98.46
KOG1179		649	consensus Very long-chain acyl-CoA synthetase/fatt	98.16
COG1020		642	EntF Non-ribosomal peptide synthetase modules and	97.45
PTZ00297		1452	pantothenate kinase; Provisional	96.42
PF14535		96	AMP-binding_C_2: AMP-binding enzyme C-terminal dom	95.79
PRK09188		365	serine/threonine protein kinase; Provisional	95.13

>PLN02620 indole-3-acetic acid-amido synthetase	Back alignment and domain information

Probab=100.00  E-value=4e-127  Score=1048.12  Aligned_cols=563  Identities=40%  Similarity=0.738  Sum_probs=529.5

Q ss_pred             hHHHHHHHHHHHhcHHHHHHHHHHHHHHHcCCChhhHhcCCCCCCChhhhhhcCCCcccccchHHHHHHhcCCCCCCccC
Q 008068           10 VDELIEEFETITKDAERIQRETLRKILEENASAEYLQNLGLNGRTDPESFKSCVPLVTHEDLQPYIQRIIDGDISPILTG   89 (579)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~Q~~~L~~iL~~~~~T~ygr~~gf~~i~s~edF~~~vPl~~Yed~~p~ier~~~Ge~~~ll~~   89 (579)
                      +++.++.+|..++||.++|+++|++||+.|++|+|||+|||++|+++++||++|||++|||++|||+||++||.++|||+
T Consensus        21 ~~~~l~~ie~~t~~~~~vQ~~vL~~IL~~n~~Teyg~~~~f~~i~~~~~F~~~VPv~~Yedl~pyI~Ri~~Ge~s~vL~~  100 (612)
T PLN02620         21 NKKALQFIEDVTSNADEVQKRVLEEILSRNAHVEYLQRHGLNGRTDRETFKKVMPVITYEDIQPDINRIANGDTSPILCS  100 (612)
T ss_pred             hHHHHHHHHHHHhCHHHHHHHHHHHHHHhcccChhHHhcCCCCCCCHHHHHHhCCCccHHHhHHHHHHHHcCCCCCccCC
Confidence            46778999999999999999999999999999999999999999999999999999999999999999999997799999


Q ss_pred             CCcceeecccccCCCCcccccCChHHHHHHHHHHHHHHHHHhccCC-CCCCceEEEeecccccccCCCCeEecccccccc
Q 008068           90 KPITTISRSSGTTQGKPKFLPFNDELMETTLQIFRTSYAFRNREFP-IGKGKALQFIYGSKQSKTKGGLNAGTATTNVYR  168 (579)
Q Consensus        90 ~pi~~f~~TSGTT~G~~K~iP~t~~~l~~~~~~~~~~~~~l~~~~p-~~~gk~l~~~~~~~~~~t~~Gi~~g~~S~~~~~  168 (579)
                      +||.+|++|||||+|++|+||+|+++++.++.++.+|..++++.+| +..||.+++++.+.+.+|++|||+|++|+.+++
T Consensus       101 ~pi~~F~~SSGTT~g~~K~IP~t~e~l~~~~~~~~~~~~~~~~~~p~l~~Gk~~~~~~~~~~~~T~~Gip~g~~st~~y~  180 (612)
T PLN02620        101 KPISEFLTSSGTSGGERKLMPTIEEELGRRSLLYSLLMPVMSQFVPGLEKGKGMYFLFIKSEAKTPGGLVARPVLTSYYK  180 (612)
T ss_pred             CChhhhhhcCCCCCCceeeeecCHHHHHHHHHHHHHHHHHHHhhCCCcccCcEEEEEecccCccCCCCcccccccchhhh
Confidence            9999999999999889999999999998888888999999999888 889999999999999999999999999999999


Q ss_pred             CchhhhhhhhhhhccCCCcccccCCChHHHHHHHHHhcccccCCcceEeccchhHHHHHHHHHHHHHHHHHHHHHhcccC
Q 008068          169 SSTFKAEMKAMQSQCCSPDEVIFGPDFHQSLYCHLLCGLIFREEIQLVFSTFAHSLVHAFRTFELVWEELCDDIREGVLS  248 (579)
Q Consensus       169 ~~~~~~~~~~~~~~~~~P~~~~~~~d~~~~~y~~Ll~al~~~~~l~~i~~~f~~~ll~~~~~l~~~~~~l~~dI~~g~~~  248 (579)
                      +.+|+.++..+...|++|.+++.++|..+++||||||+|.++++|..++++|+++|+.++++|+++|++||+||++|+++
T Consensus       181 s~~f~~~~~~~~~~~~sP~ev~~~~D~~qs~Y~~LLcgL~~~~~v~~v~svfa~~ll~a~~~Le~~w~~L~~DI~~G~ls  260 (612)
T PLN02620        181 SSHFKDRPYDPYTNYTSPNETILCPDSYQSMYSQMLCGLCQHKEVLRVGAVFASGFIRAIRFLEKHWTLLCRDIRTGTID  260 (612)
T ss_pred             hhhhhhcccccccceeCcHHhccCCCHHHHHHHHHHHHhhcchhhceEEeechHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence            99998877766678999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCchHHHHHhhccCCCCHHHHHHHHHHhcCCCCCCCCccccCCCCceeeEEeecChHHHHHHHHHHhCCCCeeccccc
Q 008068          249 SRITVPSIRAAMSKILKPNPELADLIHKKCSGLSNWYGLIPELFPNAKYLSGIMTGSMEHYLKKLRHYAGDLPLMSADYG  328 (579)
Q Consensus       249 ~~~~~~~~r~~l~~~l~~~p~~A~~L~~~~~~~~g~~g~~~~lwP~l~~i~~~~~g~~~~~~~~l~~~~g~v~v~~~~Yg  328 (579)
                      .+++++++|+++.+.|+|+|++|++|+++|.+. +|+|++++|||||++|+||++|+|++|.+.|+.|+||+|+++.+|+
T Consensus       261 ~~itd~~~R~av~~~L~p~pelA~~i~~~c~~~-~w~gii~rLWP~lk~I~~~~tGsm~~Y~p~L~~y~gglpl~~~~Y~  339 (612)
T PLN02620        261 SQITDPSVREAVMKILKPDPKLADFVEAECRKE-SWQGIITRLWPNTKYVDVIVTGTMSQYIPTLDYYSNGLPLVCTMYA  339 (612)
T ss_pred             ccCCCHHHHHHHHhhcCCCHHHHHHHHHHhccc-cccCcHHHhCCCCcEEEEECCCCHHHHHHHHHHHcCCCcccccccc
Confidence            999999999999999999999999999999984 9999999999999999999999999999999999999999999999


Q ss_pred             cCcccceecCCCCCCcccccceecCCceEEEEEeCCCCCcccc----------cccCCCccccccccCCCceEEEEEccc
Q 008068          329 SSEGWIGANVNPSLPPELATFAVLPNIGYFEFIPQRLGNLESQ----------VLCIEPKPVGLTEVKVGEEYEIIVTNV  398 (579)
Q Consensus       329 aSEg~i~~~~~~~~~~~~~~~~l~~~~~~~Efip~~~~~~~~~----------~~~~~~~~l~~~eve~G~~yeLVvTt~  398 (579)
                      ||||.+|+|++|.|+++...|+++|+.+||||||.+  +.+..          +..+++++|+++||+.|+.|||||||+
T Consensus       340 ASE~~~ginl~P~~~p~~~sy~L~p~~~yFEFip~~--~~~~~~~~~~~~~~~~~~~~~~~v~l~ev~~G~~YelvvTt~  417 (612)
T PLN02620        340 SSECYFGVNLNPLCKPSEVSYTLIPTMAYFEFLPVH--RNNGVTNSISLPKSLNEKEQQELVDLVDVKLGQEYELVVTTY  417 (612)
T ss_pred             ccceEEEeccCCCCCcccceeeecCCcEEEEEeecc--CcccccccccccccccccccCccccHHHccCCCeEEEEEEec
Confidence            999999999999998877899999999999999976  32100          001346789999999999999999999


Q ss_pred             cceeccccCCEEEEeceeCCCCEEEEEeeeCceEeeceeecCHHHHHHHHHHHHHHhhhcCCeeEeeEEeecCCCCCceE
Q 008068          399 AGLYRYRLGDVVKVMGFHNSTPELKFICRRNLLLTINIDKNTEKDLQLSVDEAAQLLAEEKQEVVDFTSHVDLSTDPGHY  478 (579)
Q Consensus       399 ~Gl~RYr~GDvv~v~~~~~~~P~i~f~gR~~d~i~~~Gekv~e~~v~~av~~~~~~l~~~g~~l~~f~~~~~~~~~~~~y  478 (579)
                      +||||||+||||+|+||||++|+|+|++|.+.++++.|||++|++|..||.+|...|...++.|+||++.+|.+..||||
T Consensus       418 ~GLyRYrlGDvv~V~Gf~n~~P~~~Fv~R~~~~lsi~gEK~tE~~l~~Av~~a~~~l~~~~~~l~dyts~~d~~~~PghY  497 (612)
T PLN02620        418 AGLYRYRVGDVLRVAGFKNKAPQFSFICRKNVVLSIDSDKTDEVELQNAVKNAVNHLVPFDASLTEYTSYADTSTIPGHY  497 (612)
T ss_pred             CceEEEecCCEEEEeeecCCCceEEEEeecCceeecccccCCHHHHHHHHHHHHHhhcccCceeeeEEeccccCCCCCce
Confidence            99999999999999999999999999999999999999999999999999999987755689999999999988899999


Q ss_pred             EEEEEec--cC--CCHHHHHHHHHHHHHhccChhhHHHhhcC-CcCCeEEEEeccchHHHHHHHHhcCCCCCCCCCCCcc
Q 008068          479 VIFWEVS--GE--VNDEVLKECCNCLDRSFVDAGYVSARKVN-AIGPLELRVVLKGTFQQILDHYLGLGAALSQFKTPRC  553 (579)
Q Consensus       479 ~~~vE~~--~~--~~~~~l~~~~~~ld~~L~n~~Y~~~R~~~-~l~p~~v~~v~~gtf~~~~~~~~~~G~~~~Q~K~Pr~  553 (579)
                      ++|||+.  ++  ++.+.+++||..||++| |.+|+.+|..+ .|+|++|++|++|||+.++++++++|++.+|||+|||
T Consensus       498 vl~~El~~~~~~~~~~~~l~~cc~~lE~~L-n~~Yr~~R~~~~sIgPLeirvv~~GtF~~l~~~~~~~G~s~~QyK~Pr~  576 (612)
T PLN02620        498 VLFWELCLNGSTPIPPSVFEDCCLTIEESL-NSVYRQGRVSDKSIGPLEIKIVEPGTFDKLMDYAISLGASINQYKTPRC  576 (612)
T ss_pred             EEEEEEecCCCCCCCHHHHHHHHHHHHHHh-CHHHHHHHhcCCcCCCcEEEEeCCChHHHHHHHHHHcCCccccccCceE
Confidence            9999983  22  45678999999999997 99999999987 5999999999999999999999999999999999999


Q ss_pred             cCCCCHHHHHHHhcccceeecccCC
Q 008068          554 VGPTNKTVLQILCNNIGKSYFSTAY  578 (579)
Q Consensus       554 ~~~~~~~~~~~l~~~~~~~~~~~~~  578 (579)
                      ++  +++++++|+++|+++|+|+++
T Consensus       577 v~--~~~~~~~l~~~v~~~~~s~~~  599 (612)
T PLN02620        577 VK--FAPIIELLNSRVVSNYFSPKC  599 (612)
T ss_pred             ec--CHHHHHHHHhhhheeeccccC
Confidence            99  999999999999999999875

>PLN02247 indole-3-acetic acid-amido synthetase	Back alignment and domain information

>PLN02249 indole-3-acetic acid-amido synthetase	Back alignment and domain information

>PF03321 GH3: GH3 auxin-responsive promoter; InterPro: IPR004993 Transcription of the gene family, GH3, has been shown to be specifically induced by the plant hormone auxin	Back alignment and domain information

>COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism]	Back alignment and domain information

>TIGR03335 F390_ftsA coenzyme F390 synthetase	Back alignment and domain information

>TIGR02155 PA_CoA_ligase phenylacetate-CoA ligase	Back alignment and domain information

>TIGR02304 aden_form_hyp probable adenylate-forming enzyme	Back alignment and domain information

>PRK07529 AMP-binding domain protein; Validated	Back alignment and domain information

>PRK06334 long chain fatty acid--[acyl-carrier-protein] ligase; Validated	Back alignment and domain information

>TIGR02188 Ac_CoA_lig_AcsA acetate--CoA ligase	Back alignment and domain information

>COG1021 EntE Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism]	Back alignment and domain information

>PRK09274 peptide synthase; Provisional	Back alignment and domain information

>PRK00174 acetyl-CoA synthetase; Provisional	Back alignment and domain information

>PRK07788 acyl-CoA synthetase; Validated	Back alignment and domain information

>PLN02574 4-coumarate--CoA ligase-like	Back alignment and domain information

>PTZ00237 acetyl-CoA synthetase; Provisional	Back alignment and domain information

>PRK13295 cyclohexanecarboxylate-CoA ligase; Reviewed	Back alignment and domain information

>PRK04319 acetyl-CoA synthetase; Provisional	Back alignment and domain information

>PRK05677 long-chain-fatty-acid--CoA ligase; Validated	Back alignment and domain information

>TIGR01734 D-ala-DACP-lig D-alanine--poly(phosphoribitol) ligase, subunit 1	Back alignment and domain information

>TIGR02316 propion_prpE propionate--CoA ligase	Back alignment and domain information

>COG0318 CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]	Back alignment and domain information

>PRK06155 crotonobetaine/carnitine-CoA ligase; Provisional	Back alignment and domain information

>PRK06060 acyl-CoA synthetase; Validated	Back alignment and domain information

>PRK07514 malonyl-CoA synthase; Validated	Back alignment and domain information

>PRK05605 long-chain-fatty-acid--CoA ligase; Validated	Back alignment and domain information

>PLN02654 acetate-CoA ligase	Back alignment and domain information

>TIGR03205 pimA dicarboxylate--CoA ligase PimA	Back alignment and domain information

>PRK09088 acyl-CoA synthetase; Validated	Back alignment and domain information

>PRK08314 long-chain-fatty-acid--CoA ligase; Validated	Back alignment and domain information

>PRK06164 acyl-CoA synthetase; Validated	Back alignment and domain information

>PRK10524 prpE propionyl-CoA synthetase; Provisional	Back alignment and domain information

>PRK03584 acetoacetyl-CoA synthetase; Provisional	Back alignment and domain information

>PLN03051 acyl-activating enzyme; Provisional	Back alignment and domain information

>PRK06145 acyl-CoA synthetase; Validated	Back alignment and domain information

>PRK07638 acyl-CoA synthetase; Validated	Back alignment and domain information

>PRK13382 acyl-CoA synthetase; Provisional	Back alignment and domain information

>PRK04813 D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional	Back alignment and domain information

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated	Back alignment and domain information

>PRK05852 acyl-CoA synthetase; Validated	Back alignment and domain information

>PRK06187 long-chain-fatty-acid--CoA ligase; Validated	Back alignment and domain information

>PRK12583 acyl-CoA synthetase; Provisional	Back alignment and domain information

>PRK07656 long-chain-fatty-acid--CoA ligase; Validated	Back alignment and domain information

>PRK07786 long-chain-fatty-acid--CoA ligase; Validated	Back alignment and domain information

>PRK08316 acyl-CoA synthetase; Validated	Back alignment and domain information

>TIGR03208 cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase	Back alignment and domain information

>PLN02246 4-coumarate--CoA ligase	Back alignment and domain information

>COG0365 Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism]	Back alignment and domain information

>PRK05851 long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated	Back alignment and domain information

>PLN02860 o-succinylbenzoate-CoA ligase	Back alignment and domain information

>PLN02736 long-chain acyl-CoA synthetase	Back alignment and domain information

>PRK07769 long-chain-fatty-acid--CoA ligase; Validated	Back alignment and domain information

>PRK12492 long-chain-fatty-acid--CoA ligase; Provisional	Back alignment and domain information

>TIGR03098 ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosortase system type 1 associated	Back alignment and domain information

>PLN02614 long-chain acyl-CoA synthetase	Back alignment and domain information

>COG1022 FAA1 Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism]	Back alignment and domain information

>PRK10946 entE enterobactin synthase subunit E; Provisional	Back alignment and domain information

>PRK08974 long-chain-fatty-acid--CoA ligase; Validated	Back alignment and domain information

>PRK07059 Long-chain-fatty-acid--CoA ligase; Validated	Back alignment and domain information

>PRK13383 acyl-CoA synthetase; Provisional	Back alignment and domain information

>PRK07470 acyl-CoA synthetase; Validated	Back alignment and domain information

>TIGR01733 AA-adenyl-dom amino acid adenylation domain	Back alignment and domain information

>PRK07867 acyl-CoA synthetase; Validated	Back alignment and domain information

>PLN02387 long-chain-fatty-acid-CoA ligase family protein	Back alignment and domain information

>TIGR02275 DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase	Back alignment and domain information

>PRK07768 long-chain-fatty-acid--CoA ligase; Validated	Back alignment and domain information

>PRK08315 AMP-binding domain protein; Validated	Back alignment and domain information

>PRK08751 putative long-chain fatty acyl CoA ligase; Provisional	Back alignment and domain information

>PRK10252 entF enterobactin synthase subunit F; Provisional	Back alignment and domain information

>PRK06839 acyl-CoA synthetase; Validated	Back alignment and domain information

>KOG1176 consensus Acyl-CoA synthetase [Lipid transport and metabolism]	Back alignment and domain information

>TIGR01217 ac_ac_CoA_syn acetoacetyl-CoA synthase	Back alignment and domain information

>PRK07787 acyl-CoA synthetase; Validated	Back alignment and domain information

>TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase	Back alignment and domain information

>PRK08043 bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated	Back alignment and domain information

>PLN02330 4-coumarate--CoA ligase-like 1	Back alignment and domain information

>PRK13388 acyl-CoA synthetase; Provisional	Back alignment and domain information

>PRK12467 peptide synthase; Provisional	Back alignment and domain information

>PRK12406 long-chain-fatty-acid--CoA ligase; Provisional	Back alignment and domain information

>PRK12467 peptide synthase; Provisional	Back alignment and domain information

>PLN02861 long-chain-fatty-acid-CoA ligase	Back alignment and domain information

>PRK05857 acyl-CoA synthetase; Validated	Back alignment and domain information

>TIGR02262 benz_CoA_lig benzoate-CoA ligase family	Back alignment and domain information

>PRK06188 acyl-CoA synthetase; Validated	Back alignment and domain information

>PRK06710 long-chain-fatty-acid--CoA ligase; Validated	Back alignment and domain information

>PRK06087 short chain acyl-CoA synthetase; Reviewed	Back alignment and domain information

>PRK12316 peptide synthase; Provisional	Back alignment and domain information

>PTZ00342 acyl-CoA synthetase; Provisional	Back alignment and domain information

>PRK08279 long-chain-acyl-CoA synthetase; Validated	Back alignment and domain information

>PRK03640 O-succinylbenzoic acid--CoA ligase; Provisional	Back alignment and domain information

>PRK08180 feruloyl-CoA synthase; Reviewed	Back alignment and domain information

>PRK12316 peptide synthase; Provisional	Back alignment and domain information

>PRK09192 acyl-CoA synthetase; Validated	Back alignment and domain information

>PRK05691 peptide synthase; Validated	Back alignment and domain information

>PRK07824 O-succinylbenzoic acid--CoA ligase; Provisional	Back alignment and domain information

>PRK08276 long-chain-fatty-acid--CoA ligase; Validated	Back alignment and domain information

>PRK08308 acyl-CoA synthetase; Validated	Back alignment and domain information

>PLN03052 acetate--CoA ligase; Provisional	Back alignment and domain information

>PRK08008 caiC putative crotonobetaine/carnitine-CoA ligase; Validated	Back alignment and domain information

>PLN03102 acyl-activating enzyme; Provisional	Back alignment and domain information

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional	Back alignment and domain information

>KOG1177 consensus Long chain fatty acid acyl-CoA ligase [Lipid transport and metabolism]	Back alignment and domain information

>PRK05850 acyl-CoA synthetase; Validated	Back alignment and domain information

>TIGR01923 menE O-succinylbenzoate-CoA ligase	Back alignment and domain information

>PF00501 AMP-binding: AMP-binding enzyme; InterPro: IPR000873 A number of prokaryotic and eukaryotic enzymes, which appear to act via an ATP-dependent covalent binding of AMP to their substrate, share a region of sequence similarity [, , ]	Back alignment and domain information

>PLN02430 long-chain-fatty-acid-CoA ligase	Back alignment and domain information

>PRK07008 long-chain-fatty-acid--CoA ligase; Validated	Back alignment and domain information

>PRK05691 peptide synthase; Validated	Back alignment and domain information

>PRK12582 acyl-CoA synthetase; Provisional	Back alignment and domain information

>KOG1256 consensus Long-chain acyl-CoA synthetases (AMP-forming) [Lipid transport and metabolism]	Back alignment and domain information

>PTZ00216 acyl-CoA synthetase; Provisional	Back alignment and domain information

>PRK05620 long-chain-fatty-acid--CoA ligase; Validated	Back alignment and domain information

>PRK07445 O-succinylbenzoic acid--CoA ligase; Reviewed	Back alignment and domain information

>PRK06178 acyl-CoA synthetase; Validated	Back alignment and domain information

>KOG1175 consensus Acyl-CoA synthetase [Lipid transport and metabolism]	Back alignment and domain information

>PRK06018 putative acyl-CoA synthetase; Provisional	Back alignment and domain information

>PRK09029 O-succinylbenzoic acid--CoA ligase; Provisional	Back alignment and domain information

>PRK08162 acyl-CoA synthetase; Validated	Back alignment and domain information

>PRK12476 putative fatty-acid--CoA ligase; Provisional	Back alignment and domain information

>PLN02479 acetate-CoA ligase	Back alignment and domain information

>PRK13391 acyl-CoA synthetase; Provisional	Back alignment and domain information

>TIGR02372 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactive yellow protein activation family	Back alignment and domain information

>PRK07868 acyl-CoA synthetase; Validated	Back alignment and domain information

>PRK13390 acyl-CoA synthetase; Provisional	Back alignment and domain information

>PRK07798 acyl-CoA synthetase; Validated	Back alignment and domain information

>KOG1180 consensus Acyl-CoA synthetase [Lipid transport and metabolism]	Back alignment and domain information

>PF04443 LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR007534 LuxE is an acyl-protein synthetase found in bioluminescent bacteria	Back alignment and domain information

>KOG1179 consensus Very long-chain acyl-CoA synthetase/fatty acid transporter [Lipid transport and metabolism]	Back alignment and domain information

>COG1020 EntF Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]	Back alignment and domain information

>PTZ00297 pantothenate kinase; Provisional	Back alignment and domain information

>PF14535 AMP-binding_C_2: AMP-binding enzyme C-terminal domain; PDB: 2Y27_A 2Y4N_A 3QOV_B 3S89_D 3LAX_A 2Y4O_B	Back alignment and domain information

>PRK09188 serine/threonine protein kinase; Provisional	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		579
4epl_A		581	Crystal Structure Of Arabidopsis Thaliana Gh3.11 (J		0.0
4b2g_A		609	Crystal Structure Of An Indole-3-acetic Acid Amido		1e-123
4ewv_A		581	Crystal Structure Of Gh3.12 In Complex With Ampcpp		1e-111
4eq4_A		581	Crystal Structure Of Seleno-Methionine Derivatized		1e-107

>pdb|4EPL|A Chain A, Crystal Structure Of Arabidopsis Thaliana Gh3.11 (Jar1) In Complex With Ja-Ile Length = 581

Back alignment and structure

Iteration: 1

Score = 823 bits (2127), Expect = 0.0, Method: Compositional matrix adjust. Identities = 385/581 (66%), Positives = 477/581 (82%), Gaps = 9/581 (1%) Query: 1 MLEKMETVDVDELIEEFETITKDAERIQRETLRKILEENASAEYLQNLGLNGR-TDPE-S 58 MLEK+ET D++ +I+EF+ +T++A ++Q++TL++IL +N SA YLQN GLNG TDPE + Sbjct: 7 MLEKVETFDMNRVIDEFDEMTRNAHQVQKQTLKEILLKNQSAIYLQNCGLNGNATDPEEA 66 Query: 59 FKSCVPLVTHEDLQPYIQRIIDGDISPILTGKPITTISRSSGTTQGKPKFLPFNDELMET 118 FKS VPLVT +L+PYI+R++DGD SPILTG P+ IS SSGT+QG+PKF+PF DELME Sbjct: 67 FKSMVPLVTDVELEPYIKRMVDGDTSPILTGHPVPAISLSSGTSQGRPKFIPFTDELMEN 126 Query: 119 TLQIFRTSYAFRNREFPIG-KGKALQFIYGSKQSKTKGGLNAGTATTNVYRSSTFKAEMK 177 TLQ+FRT++AFRNR+FPI GKALQFI+ SKQ + GG+ GTATTNVYR+ FKA MK Sbjct: 127 TLQLFRTAFAFRNRDFPIDDNGKALQFIFSSKQYISTGGVPVGTATTNVYRNPNFKAGMK 186 Query: 178 AMQSQCCSPDEVIFGPDFHQSLYCHLLCGLIFREEIQLVFSTFAHSLVHAFRTFELVWEE 237 ++ S CSPDEVIF PD HQ+LYCHLL G++FR+++Q VF+ FAH LVHAFRTFE VWEE Sbjct: 187 SITSPSCSPDEVIFSPDVHQALYCHLLSGILFRDQVQYVFAVFAHGLVHAFRTFEQVWEE 246 Query: 238 LCDDIREGVLSSRITVPSIRAAMSKILKPNPELADLIHKKCSGLSNWYGLIPELFPNAKY 297 + DI++GVLS+RITVPS+R AMSK+L PNPELA+ I KC LSNWYGLIP LFPNAKY Sbjct: 247 IVTDIKDGVLSNRITVPSVRTAMSKLLTPNPELAETIRTKCMSLSNWYGLIPALFPNAKY 306 Query: 298 LSGIMTGSMEHYLKKLRHYAGDLPLMSADYGSSEGWIGANVNPSLPPELATFAVLPNIGY 357 + GIMTGSME Y+ KLRHYAGDLPL+S DYGSSEGWI ANV P L PE ATFAV+PN+GY Sbjct: 307 VYGIMTGSMEPYVPKLRHYAGDLPLVSHDYGSSEGWIAANVTPRLSPEEATFAVIPNLGY 366 Query: 358 FEFIPQRLGNLESQVLCIEPKPVGLTEVKVGEEYEIIVTNVAGLYRYRLGDVVKVMGFHN 417 FEF+P S+ E KPVGLT+VK+GEEYE+++TN AGLYRYRLGDVVKV+GF+N Sbjct: 367 FEFLPV------SETGEGEEKPVGLTQVKIGEEYEVVITNYAGLYRYRLGDVVKVIGFYN 420 Query: 418 STPELKFICRRNLLLTINIDKNTEKDLQLSVDXXXXXXXXXXXXVVDFTSHVDLSTDPGH 477 +TP+LKFICRRNL+L+INIDKNTE+DLQLSV+ V+DF+S++D+STDPGH Sbjct: 421 NTPQLKFICRRNLILSINIDKNTERDLQLSVESAAKRLSEEKIEVIDFSSYIDVSTDPGH 480 Query: 478 YVIFWEVSGEVNDEVLKECCNCLDRSFVDAGYVSARKVNAIGPLELRVVLKGTFQQILDH 537 Y IFWE+SGE N++VL++CCNCLDR+F+DAGYVS+RK IG LELRVV KGTF++I +H Sbjct: 481 YAIFWEISGETNEDVLQDCCNCLDRAFIDAGYVSSRKCKTIGALELRVVAKGTFRKIQEH 540 Query: 538 YLGLGAALSQFKTPRCVGPTNKTVLQILCNNIGKSYFSTAY 578 +LGLG++ QFK PRCV P+N VLQILC N+ SYFSTA+ Sbjct: 541 FLGLGSSAGQFKMPRCVKPSNAKVLQILCENVVSSYFSTAF 581

PyMOL of 4epl

>pdb|4B2G|A Chain A, Crystal Structure Of An Indole-3-acetic Acid Amido Synthase From Vitis Vinifera Involved In Auxin Homeostasis Length = 609

Back alignment and structure

>pdb|4EWV|A Chain A, Crystal Structure Of Gh3.12 In Complex With Ampcpp Length = 581

Back alignment and structure

>pdb|4EQ4|A Chain A, Crystal Structure Of Seleno-Methionine Derivatized Gh3.12 Length = 581

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		579
4epl_A		581	Jasmonic acid-amido synthetase JAR1; ANL adenylati	1e-173
4eql_A		581	4-substituted benzoates-glutamate ligase GH3.12; f	1e-149
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-11

>4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana} Length = 581	Back alignment and structure

 Score =  502 bits (1292), Expect = e-173
 Identities = 387/581 (66%), Positives = 480/581 (82%), Gaps = 9/581 (1%)

Query: 1   MLEKMETVDVDELIEEFETITKDAERIQRETLRKILEENASAEYLQNLGLNGRTD--PES 58
           MLEK+ET D++ +I+EF+ +T++A ++Q++TL++IL +N SA YLQN GLNG      E+
Sbjct: 7   MLEKVETFDMNRVIDEFDEMTRNAHQVQKQTLKEILLKNQSAIYLQNCGLNGNATDPEEA 66

Query: 59  FKSCVPLVTHEDLQPYIQRIIDGDISPILTGKPITTISRSSGTTQGKPKFLPFNDELMET 118
           FKS VPLVT  +L+PYI+R++DGD SPILTG P+  IS SSGT+QG+PKF+PF DELME 
Sbjct: 67  FKSMVPLVTDVELEPYIKRMVDGDTSPILTGHPVPAISLSSGTSQGRPKFIPFTDELMEN 126

Query: 119 TLQIFRTSYAFRNREFP-IGKGKALQFIYGSKQSKTKGGLNAGTATTNVYRSSTFKAEMK 177
           TLQ+FRT++AFRNR+FP    GKALQFI+ SKQ  + GG+  GTATTNVYR+  FKA MK
Sbjct: 127 TLQLFRTAFAFRNRDFPIDDNGKALQFIFSSKQYISTGGVPVGTATTNVYRNPNFKAGMK 186

Query: 178 AMQSQCCSPDEVIFGPDFHQSLYCHLLCGLIFREEIQLVFSTFAHSLVHAFRTFELVWEE 237
           ++ S  CSPDEVIF PD HQ+LYCHLL G++FR+++Q VF+ FAH LVHAFRTFE VWEE
Sbjct: 187 SITSPSCSPDEVIFSPDVHQALYCHLLSGILFRDQVQYVFAVFAHGLVHAFRTFEQVWEE 246

Query: 238 LCDDIREGVLSSRITVPSIRAAMSKILKPNPELADLIHKKCSGLSNWYGLIPELFPNAKY 297
           +  DI++GVLS+RITVPS+R AMSK+L PNPELA+ I  KC  LSNWYGLIP LFPNAKY
Sbjct: 247 IVTDIKDGVLSNRITVPSVRTAMSKLLTPNPELAETIRTKCMSLSNWYGLIPALFPNAKY 306

Query: 298 LSGIMTGSMEHYLKKLRHYAGDLPLMSADYGSSEGWIGANVNPSLPPELATFAVLPNIGY 357
           + GIMTGSME Y+ KLRHYAGDLPL+S DYGSSEGWI ANV P L PE ATFAV+PN+GY
Sbjct: 307 VYGIMTGSMEPYVPKLRHYAGDLPLVSHDYGSSEGWIAANVTPRLSPEEATFAVIPNLGY 366

Query: 358 FEFIPQRLGNLESQVLCIEPKPVGLTEVKVGEEYEIIVTNVAGLYRYRLGDVVKVMGFHN 417
           FEF+P             E KPVGLT+VK+GEEYE+++TN AGLYRYRLGDVVKV+GF+N
Sbjct: 367 FEFLPVSETGEG------EEKPVGLTQVKIGEEYEVVITNYAGLYRYRLGDVVKVIGFYN 420

Query: 418 STPELKFICRRNLLLTINIDKNTEKDLQLSVDEAAQLLAEEKQEVVDFTSHVDLSTDPGH 477
           +TP+LKFICRRNL+L+INIDKNTE+DLQLSV+ AA+ L+EEK EV+DF+S++D+STDPGH
Sbjct: 421 NTPQLKFICRRNLILSINIDKNTERDLQLSVESAAKRLSEEKIEVIDFSSYIDVSTDPGH 480

Query: 478 YVIFWEVSGEVNDEVLKECCNCLDRSFVDAGYVSARKVNAIGPLELRVVLKGTFQQILDH 537
           Y IFWE+SGE N++VL++CCNCLDR+F+DAGYVS+RK   IG LELRVV KGTF++I +H
Sbjct: 481 YAIFWEISGETNEDVLQDCCNCLDRAFIDAGYVSSRKCKTIGALELRVVAKGTFRKIQEH 540

Query: 538 YLGLGAALSQFKTPRCVGPTNKTVLQILCNNIGKSYFSTAY 578
           +LGLG++  QFK PRCV P+N  VLQILC N+  SYFSTA+
Sbjct: 541 FLGLGSSAGQFKMPRCVKPSNAKVLQILCENVVSSYFSTAF 581

PyMOL of 4epl

>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A* Length = 581	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		579
4epl_A		581	Jasmonic acid-amido synthetase JAR1; ANL adenylati	100.0
4b2g_A		609	GH3-1 auxin conjugating enzyme; signaling protein,	100.0
4eql_A		581	4-substituted benzoates-glutamate ligase GH3.12; f	100.0
3qov_A		436	Phenylacetate-coenzyme A ligase; acetyl-COA synthe	99.91
2y27_A		437	Phenylacetate-coenzyme A ligase; phenylacetic acid	99.9
2y4o_A		443	Phenylacetate-coenzyme A ligase; phenylacetic acid	99.9
3e7w_A		511	D-alanine--poly(phosphoribitol) ligase subunit 1;	99.64
3etc_A		580	AMP-binding protein; adenylate-forming acyl-COA sy	99.64
2d1s_A		548	Luciferase, luciferin 4-monooxygenase; alpha/beta,	99.62
3hgu_A		369	EHPF; phenazine, antibiotic, biosynthetic protein;	99.62
3ni2_A		536	4-coumarate:COA ligase; 4CL, phenylpropanoid biosy	99.61
4fuq_A		503	Malonyl COA synthetase; ANL superfamily, methylma	99.6
3fce_A		512	D-alanine--poly(phosphoribitol) ligase subunit 1;	99.6
3l8c_A		521	D-alanine--poly(phosphoribitol) ligase subunit 1;	99.59
3kxw_A		590	Saframycin MX1 synthetase B; fatty acid AMP ligase	99.58
1mdb_A		539	2,3-dihydroxybenzoate-AMP ligase; adenylation doma	99.58
3g7s_A		549	Long-chain-fatty-acid--COA ligase (FADD-1); protei	99.58
2v7b_A		529	Benzoate-coenzyme A ligase; benzoate oxidation, be	99.57
3ivr_A		509	Putative long-chain-fatty-acid COA ligase; structu	99.56
3nyq_A		505	Malonyl-COA ligase; A/B topology ababa sandwich be	99.54
1t5h_X		504	4-chlorobenzoyl COA ligase; adenylate-forming coen	99.54
3c5e_A		570	Acyl-coenzyme A synthetase ACSM2A, mitochondrial;	99.54
3ite_A		562	SIDN siderophore synthetase; ligase, non-ribosomal	99.53
3gqw_A		576	Fatty acid AMP ligase; FAAL, E. coli, ATP-dependen	99.53
3rix_A		550	Luciferase, luciferin 4-monooxygenase; oxidoreduct	99.51
1pg4_A		652	Acetyl-COA synthetase; AMP-forming, adenylate-form	99.51
1amu_A		563	GRSA, gramicidin synthetase 1; peptide synthetase,	99.51
3r44_A		517	Fatty acyl COA synthetase FADD13 (fatty-acyl-COA s	99.5
3o83_A		544	Peptide arylation enzyme; ligase, adenylation of 2	99.49
3rg2_A		617	Enterobactin synthase component E (ENTE), 2,3-DIH	99.48
1ry2_A		663	Acetyl-coenzyme A synthetase 1, acyl-activating en	99.48
4gr5_A		570	Non-ribosomal peptide synthetase; MBTH-like domain	99.48
3ipl_A		501	2-succinylbenzoate--COA ligase; structural genomic	99.48
3tsy_A		979	Fusion protein 4-coumarate--COA ligase 1, resvera	99.42
4dg8_A		620	PA1221; ANL superfamily, adenylation domain, pepti	99.42
4gs5_A		358	Acyl-COA synthetase (AMP-forming)/AMP-acid ligase	99.41
2vsq_A		1304	Surfactin synthetase subunit 3; ligase, peptidyl c	99.37
1v25_A		541	Long-chain-fatty-acid-COA synthetase; ligase, stru	99.37
3t5a_A		480	Long-chain-fatty-acid--AMP ligase FADD28; acetyl-C	98.83
3lax_A		109	Phenylacetate-coenzyme A ligase; structural genomi	97.59
3gxs_A		109	Phenylacetate-coenzyme A ligase; APC62324.1, struc	97.42

>4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana}	Back alignment and structure

Probab=100.00  E-value=6.7e-131  Score=1086.95  Aligned_cols=570  Identities=68%  Similarity=1.177  Sum_probs=524.7

Q ss_pred             CCccccCCChHHHHHHHHHHHhcHHHHHHHHHHHHHHHcCCChhhHhcCCCCC-CChh-hhhhcCCCcccccchHHHHHH
Q 008068            1 MLEKMETVDVDELIEEFETITKDAERIQRETLRKILEENASAEYLQNLGLNGR-TDPE-SFKSCVPLVTHEDLQPYIQRI   78 (579)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~~~L~~iL~~~~~T~ygr~~gf~~i-~s~e-dF~~~vPl~~Yed~~p~ier~   78 (579)
                      |+|||+.+++++.++.|++.|+||.++|+++|++||+.|++|+|||+|||++| +|++ ||+++|||++|||++||||||
T Consensus         7 ~~~~~~~~~~~~~~~~~e~~~~~~~~vQ~~vL~~iL~~n~~Teygk~~gf~~i~~~~e~dF~~~VPi~~Yedl~pyIeRi   86 (581)
T 4epl_A            7 MLEKVETFDMNRVIDEFDEMTRNAHQVQKQTLKEILLKNQSAIYLQNCGLNGNATDPEEAFKSMVPLVTDVELEPYIKRM   86 (581)
T ss_dssp             ------CCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCHHHHTTTCC----CHHHHHHHHSCCBCHHHHHHHHHHH
T ss_pred             hhhcccccccHHHHHHHHHHHcCHHHHHHHHHHHHHHHhccCHHHHhcCCCcccCCHHHHHHHhCCCccHHHHHHHHHHH
Confidence            89999999999999999999999999999999999999999999999999999 9999 999999999999999999999


Q ss_pred             hcCCCCCCccCCCcceeecccccCCCCcccccCChHHHHHHHHHHHHHHHHHhccCCCC-CCceEEEeecccccccCCCC
Q 008068           79 IDGDISPILTGKPITTISRSSGTTQGKPKFLPFNDELMETTLQIFRTSYAFRNREFPIG-KGKALQFIYGSKQSKTKGGL  157 (579)
Q Consensus        79 ~~Ge~~~ll~~~pi~~f~~TSGTT~G~~K~iP~t~~~l~~~~~~~~~~~~~l~~~~p~~-~gk~l~~~~~~~~~~t~~Gi  157 (579)
                      ++||.++|||++||.+|++|||||+|++|+||+|+++++.+++++.+|+.++++.+++. .||.|+|++++.+..|++|+
T Consensus        87 ~~Ge~~~iL~~~pi~~f~~SSGTT~gk~K~IP~T~~~l~~~~~~~~~~~~~~~~~p~l~~~Gk~L~l~~~s~~~~t~~Gi  166 (581)
T 4epl_A           87 VDGDTSPILTGHPVPAISLSSGTSQGRPKFIPFTDELMENTLQLFRTAFAFRNRDFPIDDNGKALQFIFSSKQYISTGGV  166 (581)
T ss_dssp             HTTCCSSSSSSSCCSEEEEEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHSCCCTTCEEEEECCCCCCEECTTSC
T ss_pred             HCCCCCCccCCCCcceEEecCCCCCCCccccccCHHHHHHHHHHHHHHHHHHhhCCccccCCcEEEEeecCCcccCCCCc
Confidence            99997899999999999999999999999999999999988777778888887733387 89999988899999999999


Q ss_pred             eEeccccccccCchhhhhhhhhhhccCCCcccccCCChHHHHHHHHHhcccccCCcceEeccchhHHHHHHHHHHHHHHH
Q 008068          158 NAGTATTNVYRSSTFKAEMKAMQSQCCSPDEVIFGPDFHQSLYCHLLCGLIFREEIQLVFSTFAHSLVHAFRTFELVWEE  237 (579)
Q Consensus       158 ~~g~~S~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~d~~~~~y~~Ll~al~~~~~l~~i~~~f~~~ll~~~~~l~~~~~~  237 (579)
                      |+|++|++++++.+|++.|.|+...|++|.+++.++|..+++||||||||.++++|.+|+++||++|+++++.++++|++
T Consensus       167 ~~G~~S~~~~~s~~f~~~p~~~~~~~t~P~e~i~~~D~~~~~Y~~Ll~~L~~~~~v~~i~a~fas~ll~~~~~l~~~We~  246 (581)
T 4epl_A          167 PVGTATTNVYRNPNFKAGMKSITSPSCSPDEVIFSPDVHQALYCHLLSGILFRDQVQYVFAVFAHGLVHAFRTFEQVWEE  246 (581)
T ss_dssp             EEECHHHHHHTSTTHHHHHGGGSCCBSSCHHHHTCSCHHHHHHHHHHHHHHTGGGEEEEEEEEHHHHHHHHHHHHHHHHH
T ss_pred             eeeechhhhhhcchhhcCchhhhhcccCCHHHhcCCCHHHHHHHHHHHhhhccccccEEeeccHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999988889999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcccCCCCCchHHHHHhhccCCCCHHHHHHHHHHhcCCCCCCCCccccCCCCceeeEEeecChHHHHHHHHHHh
Q 008068          238 LCDDIREGVLSSRITVPSIRAAMSKILKPNPELADLIHKKCSGLSNWYGLIPELFPNAKYLSGIMTGSMEHYLKKLRHYA  317 (579)
Q Consensus       238 l~~dI~~g~~~~~~~~~~~r~~l~~~l~~~p~~A~~L~~~~~~~~g~~g~~~~lwP~l~~i~~~~~g~~~~~~~~l~~~~  317 (579)
                      +|+||++|+++++++++++|+++++.|+|+|++|++|+++|++.++|+|++++|||||++|+||++|+|.+|++++++++
T Consensus       247 l~~dI~~gtl~~~it~~~~R~~l~~v~~p~~~~a~~l~~~~~~~~~~~g~i~~lWPnl~~i~~~~~G~~~~Y~~~l~~~~  326 (581)
T 4epl_A          247 IVTDIKDGVLSNRITVPSVRTAMSKLLTPNPELAETIRTKCMSLSNWYGLIPALFPNAKYVYGIMTGSMEPYVPKLRHYA  326 (581)
T ss_dssp             HHHHHHHTCCCTTCCCHHHHHHHHTTCCCCHHHHHHHHHHHHHSSTTTTHHHHHCTTCCCEEEECSGGGGGGHHHHHHHH
T ss_pred             HHHHHHhcCCCcCCCCHHHHHHHhCCCCCCHHHHHHHHHHhCCCCccccCHHHhCCCCceEEEEeCCChHHHHHHHHHHc
Confidence            99999999999999999999999999999999999999999872248999999999999999999999999999999999


Q ss_pred             CCCCeeccccccCcccceecCCCCCCcccccceecCCceEEEEEeCCCCCcccccccCCCccccccccCCCceEEEEEcc
Q 008068          318 GDLPLMSADYGSSEGWIGANVNPSLPPELATFAVLPNIGYFEFIPQRLGNLESQVLCIEPKPVGLTEVKVGEEYEIIVTN  397 (579)
Q Consensus       318 g~v~v~~~~YgaSEg~i~~~~~~~~~~~~~~~~l~~~~~~~Efip~~~~~~~~~~~~~~~~~l~~~eve~G~~yeLVvTt  397 (579)
                      |++|+++.+|+||||++|+|+++.|+++..+|+++|+.+||||||.+  +.++    +++++++++||+.|++|||||||
T Consensus       327 g~~p~~~~~Y~ASEg~~gi~~~p~~~~~~~~~~L~p~~~ffEFiP~~--~~~~----~~~~~v~l~eve~G~~YelviTt  400 (581)
T 4epl_A          327 GDLPLVSHDYGSSEGWIAANVTPRLSPEEATFAVIPNLGYFEFLPVS--ETGE----GEEKPVGLTQVKIGEEYEVVITN  400 (581)
T ss_dssp             TTSCEEECCEEETTEEEEECCCTTSCTTTCCEEECTTSCEEEEEEC-------------CCCEEGGGCCTTCEEEEEEES
T ss_pred             CCCccccCceeccceeeeeecCCCCCccccceeecCCcEEEEEEecc--cccC----CCCceeeHHHcCCCCeEEEEEee
Confidence            89999999999999999999999998777789999999999999987  4433    35789999999999999999999


Q ss_pred             ccceeccccCCEEEEeceeCCCCEEEEEeeeCceEeeceeecCHHHHHHHHHHHHHHhhhcCCeeEeeEEeecCCCCCce
Q 008068          398 VAGLYRYRLGDVVKVMGFHNSTPELKFICRRNLLLTINIDKNTEKDLQLSVDEAAQLLAEEKQEVVDFTSHVDLSTDPGH  477 (579)
Q Consensus       398 ~~Gl~RYr~GDvv~v~~~~~~~P~i~f~gR~~d~i~~~Gekv~e~~v~~av~~~~~~l~~~g~~l~~f~~~~~~~~~~~~  477 (579)
                      .+||||||+||+|+|+|++|++|+|+|+||++++||++||||+|++|+.||.+|++.|.++|+.|.||++.+|.++.|||
T Consensus       401 ~~GL~RYr~GD~v~v~g~~~~~p~~~~~gR~~~~l~~~Ge~~~~~~v~~al~~a~~~l~~~~~~l~eft~~~d~~~~p~h  480 (581)
T 4epl_A          401 YAGLYRYRLGDVVKVIGFYNNTPQLKFICRRNLILSINIDKNTERDLQLSVESAAKRLSEEKIEVIDFSSYIDVSTDPGH  480 (581)
T ss_dssp             TTSCSSEEEEEEEEEEEEETTEEEEEEEEETTCCBCSSSCCBCHHHHHHHHHHHHHHHHTTTCCEEEEEEEEECSSSSCE
T ss_pred             ccceeeEEcCCEEEEecccCCCcEEEEEeecCCeEEeeeeECCHHHHHHHHHHHHHhhcccCCeEEEEEEecCCCCCCCc
Confidence            99999999999999999999999999999999999999999999999999999998777789999999999988888999


Q ss_pred             EEEEEEeccCCCHHHHHHHHHHHHHhccChhhHHHhhcCCcCCeEEEEeccchHHHHHHHHhcCCCCCCCCCCCccc--C
Q 008068          478 YVIFWEVSGEVNDEVLKECCNCLDRSFVDAGYVSARKVNAIGPLELRVVLKGTFQQILDHYLGLGAALSQFKTPRCV--G  555 (579)
Q Consensus       478 y~~~vE~~~~~~~~~l~~~~~~ld~~L~n~~Y~~~R~~~~l~p~~v~~v~~gtf~~~~~~~~~~G~~~~Q~K~Pr~~--~  555 (579)
                      |++|||+.+.++.+.+++||..||++|.|++|+.+|..|+|+|++|++|++|+|++|+++++++|++++|||+|||+  +
T Consensus       481 yv~~wE~~~~~~~~~l~~~~~~Ld~~L~n~~Y~~~R~~~~L~pl~v~~v~~G~F~~l~~~~~~~G~~~~Q~K~PR~~~~~  560 (581)
T 4epl_A          481 YAIFWEISGETNEDVLQDCCNCLDRAFIDAGYVSSRKCKTIGALELRVVAKGTFRKIQEHFLGLGSSAGQFKMPRCVKPS  560 (581)
T ss_dssp             EEEEEEESSCCCHHHHHHHHHHHHHHCCCHHHHHHHHHTSSCCCEEEEECTTHHHHHHHHHHTTC------CCCSSCCTT
T ss_pred             EEEEEeecCCCCHHHHHHHHHHHHHHhCChhHHHHHhcCCCCCcEEEEeCcchHHHHHHHHHhCCCCCCCcCCCeeecCC
Confidence            99999997777778899999999999779999999999999999999999999999999999999999999999999  8


Q ss_pred             CCCHHHHHHHhcccceeecccCC
Q 008068          556 PTNKTVLQILCNNIGKSYFSTAY  578 (579)
Q Consensus       556 ~~~~~~~~~l~~~~~~~~~~~~~  578 (579)
                        +++++++|+++||++|+|+++
T Consensus       561 --~~~~~~~L~~~v~~~~~s~~~  581 (581)
T 4epl_A          561 --NAKVLQILCENVVSSYFSTAF  581 (581)
T ss_dssp             --CHHHHHHHHTTEEEEEECCCC
T ss_pred             --CHHHHHHHHhcccccccCCCC
Confidence              999999999999999999875

PyMOL of 4epl

>4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera}	Back alignment and structure

>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A*	Back alignment and structure

>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*	Back alignment and structure

>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*	Back alignment and structure

>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}	Back alignment and structure

>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*	Back alignment and structure

>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}	Back alignment and structure

>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*	Back alignment and structure

>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*	Back alignment and structure

>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*	Back alignment and structure

>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*	Back alignment and structure

>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*	Back alignment and structure

>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*	Back alignment and structure

>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*	Back alignment and structure

>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A	Back alignment and structure

>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}	Back alignment and structure

>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}	Back alignment and structure

>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0	Back alignment and structure

>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*	Back alignment and structure

>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*	Back alignment and structure

>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*	Back alignment and structure

>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}	Back alignment and structure

>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A	Back alignment and structure

>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*	Back alignment and structure

>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1	Back alignment and structure

>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A	Back alignment and structure

>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*	Back alignment and structure

>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}	Back alignment and structure

>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1	Back alignment and structure

>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A	Back alignment and structure

>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}	Back alignment and structure

>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}	Back alignment and structure

>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*	Back alignment and structure

>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}	Back alignment and structure

>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}	Back alignment and structure

>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*	Back alignment and structure

>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A	Back alignment and structure

>3lax_A Phenylacetate-coenzyme A ligase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.43A {Bacteroides vulgatus}	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		579
d1pg4a_		643	Acetyl-CoA synthetase {Salmonella enterica [TaxId:	99.52
d1lcia_		541	Luciferase {Firefly (Photinus pyralis) [TaxId: 705	99.45
d1amua_		514	Phenylalanine activating domain of gramicidin synt	99.34
d1ry2a_		640	Acetyl-CoA synthetase {Baker's yeast (Saccharomyce	99.28
d1mdba_		536	Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtil	99.1
d1v25a_		534	Long chain fatty acid-CoA ligase TT0168 {Thermus t	99.08
d3cw9a1		503	4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId	98.98

>d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]}	Back information, alignment and structure

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Salmonella enterica [TaxId: 28901]

Probab=99.52  E-value=3e-13  Score=150.27  Aligned_cols=177  Identities=10%  Similarity=0.046  Sum_probs=109.9

Q ss_pred             CCCCceeeEEeecCh---HHHHHHHHHHhC--CCCeeccccccCccc-ceecCCCCC---CcccccceecCCceEEEEEe
Q 008068          292 FPNAKYLSGIMTGSM---EHYLKKLRHYAG--DLPLMSADYGSSEGW-IGANVNPSL---PPELATFAVLPNIGYFEFIP  362 (579)
Q Consensus       292 wP~l~~i~~~~~g~~---~~~~~~l~~~~g--~v~v~~~~YgaSEg~-i~~~~~~~~---~~~~~~~~l~~~~~~~Efip  362 (579)
                      .++||   .+.+||.   +...+.+.+.+|  +++++ +.||+||.. +.+...+..   .++..|.. .++ .-+..++
T Consensus       373 l~sLr---~i~~~G~pl~~~~~~~~~~~~g~~~~~i~-~~yG~TE~g~~~~~~~~~~~~~~~gs~G~p-~~g-~~v~ivd  446 (643)
T d1pg4a_         373 RSSLR---ILGSVGEPINPEAWEWYWKKIGKEKCPVV-DTWWQTETGGFMITPLPGAIELKAGSATRP-FFG-VQPALVD  446 (643)
T ss_dssp             CTTCC---EEEEESSCCCHHHHHHHHHHTTTTCSCEE-EEBCCGGGSSCSBCCCTTTCCBCTTCCBSB-CTT-CCEEEEC
T ss_pred             CCceE---EEEEEeCCCCHHHHHHHHHHhCCCCceEE-EeechhhccceEEecCCCccCCCCCccccc-cCC-CEEEEEC
Confidence            45788   6666663   555566777764  58899 999999964 222211111   12223332 222 2344444


Q ss_pred             CCCCCcccccccCCCccccccccCCCceEEEEEccc-----ccee----------------ccccCCEEEEeceeCCCCE
Q 008068          363 QRLGNLESQVLCIEPKPVGLTEVKVGEEYEIIVTNV-----AGLY----------------RYRLGDVVKVMGFHNSTPE  421 (579)
Q Consensus       363 ~~~~~~~~~~~~~~~~~l~~~eve~G~~yeLVvTt~-----~Gl~----------------RYr~GDvv~v~~~~~~~P~  421 (579)
                      .+            +.     +++.|+.|||+|+..     .|+|                +|+|||+++++.    .+.
T Consensus       447 ~~------------g~-----~~~~g~~Gel~v~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~TGDl~~~d~----dG~  505 (643)
T d1pg4a_         447 NE------------GH-----PQEGATEGNLVITDSWPGQARTLFGDHERFEQTYFSTFKNMYFSGDGARRDE----DGY  505 (643)
T ss_dssp             TT------------CC-----BCCSSEEEEEEECSCCTTCCCEETTCHHHHHHHHHSSSTTSEEEEEEEEECT----TSC
T ss_pred             CC------------CC-----CCCCCceEEEEEecCCCcccccccCChhhchhhhcccCCCeEEcCCEEEECC----Cce
Confidence            32            23     457899999999762     3444                499999999985    689


Q ss_pred             EEEEeeeCceEeeceeecCHHHHHHHHHHHHHHhhhcCCeeEeeEEe--ecCCCCCceEEEEEEeccC--CCHHHHHHHH
Q 008068          422 LKFICRRNLLLTINIDKNTEKDLQLSVDEAAQLLAEEKQEVVDFTSH--VDLSTDPGHYVIFWEVSGE--VNDEVLKECC  497 (579)
Q Consensus       422 i~f~gR~~d~i~~~Gekv~e~~v~~av~~~~~~l~~~g~~l~~f~~~--~~~~~~~~~y~~~vE~~~~--~~~~~l~~~~  497 (579)
                      +.|+||.+|+|+++|++|++.|||++|.+.      .+  |.+-+++  .+.. ....-+.||.+..+  .+.+...++.
T Consensus       506 l~i~GR~dd~ik~~G~ri~p~eIE~~l~~~------p~--V~eaaVvg~~d~~-~ge~~~a~Vv~~~~~~~~~~~~~~i~  576 (643)
T d1pg4a_         506 YWITGRVDDVLNVSGHRLGTAEIESALVAH------PK--IAEAAVVGIPHAI-KGQAIYAYVTLNHGEEPSPELYAEVR  576 (643)
T ss_dssp             EEEEEESSSEEEETTEEEEHHHHHHHHHHS------TT--EEEEEEEEEEETT-TEEEEEEEEEECTTCCCCHHHHHHHH
T ss_pred             EEEecccccEEEECCEEECHHHHHHHHHhC------CC--cceEEEEEEECCC-CCeEEEEEEEECCCCCCCHHHHHHHH
Confidence            999999999999999999999999999753      23  3344332  2321 11234467877543  3444444444


Q ss_pred             HHHHHhc
Q 008068          498 NCLDRSF  504 (579)
Q Consensus       498 ~~ld~~L  504 (579)
                      +.+.+.|
T Consensus       577 ~~~~~~L  583 (643)
T d1pg4a_         577 NWVRKEI  583 (643)
T ss_dssp             HHHHHHT
T ss_pred             HHHHhhC
Confidence            4455444

PyMOL of d1pg4a_

>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]}	Back information, alignment and structure

>d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]}	Back information, alignment and structure

>d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]}	Back information, alignment and structure

>d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure

>d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]}	Back information, alignment and structure