Citrus Sinensis ID: 008073

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------58

MMTDEDILKKLEDSTKNATRHQLETLQSILERQSGVRYLQPYLSGCCAPIDAATYKRTVPLSCYDDYADHINQLAGGDHGQNDQPLLAVDPLVCFFYSSGTSSMKPKLIPYFDSALSKAASQIAIQGSVAILRRLFPPKHDVNKILFFIYSDNKTTTKAGFKVMAASAFPLQGSSNENLSQLIRHSSPREVIVGSNFQHQMYCHLLCGLRNYEFIDGIFSPYAIGLIGAFSFFESKWEQLCDDLENGYPCLDITEVAMRDSVIEVLGGPQPDLSKRIRSICGESNWSGIFSKLWPNVRYIKCVTTGSMSQYCSKIKYYAGEVPVLGGDYFASECYVGINLDIAQPPQTTRFVMLPTAAYFEFLPFDMEKNEAVGEETVDFSGVEIGKMYEVVVTTYRGFYRYRLGDIVKVVDFYNSSPQVEFVMRAPKSSFEIISERDLMSAMESFQMMLRNVMAVEIVEFAGYTNLESSPKKLMIFVEIREGCTKLRDSVAILRRCCSSLEDAFGSIYKVQRDRGEISPLSVSIVKPGTFDRLLQVAIEKGAPASQYKPPKIVRNREIVEFMEGCSLVTVRLDSLDG

cccHHHHHHHHHHHHHcHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHccccccccHHHHHHHHHccccccccccccccccccEEEccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccccccccEEEEEEEcccccccccccccccccccccccccccccHHHcccccHHHHccccHHHHHHHHHHHcccccccccEEEcccHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHccccHHHHHHHHHHHcccccccccccccccccEEEEEEcccHHHHHHHHHHHccccccccccccccccEEEEEccccccccccEEEcccccEEEEEEEccccccccccccEEccccccccEEEEEEEEccccccccccccEEEEEEEEccccEEEEEEcccccccccccHHHHHHHHHHHHHHHHHHcccEEEEEEEEccccccccEEEEEEEEEccccccccHHHHHHHHHHHHHHHHcccHHHHHccccccccEEEEccccHHHHHHHHHHHcccccccccccEEcccHHHHHHHHccccEEEEcccccc

ccccHHHHHHHHHHHHcHHHHHHHHHHHHHHHcccHHHHHHHcccccccccHHHHHHcccEEEHHHHHHHHHHHHccccccccccEEcccccEEEEEcccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccEEEEEEEccccccccccccccccccccccccccccccccccccccHEEEcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHccccHHHHHHHHHHHHccccccHHHHHccccEEEEEEEcccHHHHHHHHHHHcccccEEcccHcccccEEEEEcccccccccEEEEEEcccEEEEEEEcccccccccccccEEEEEEEEccEEEEEEEEcccEEEEEcccEEEEEcccccccEEEEEEEccccccccccHHHHHHHHHHHHHHHHHHcccEEEEEEEEcccccccccEEEEEEEEcccccccccHHHHHHHHHHHHHHccHHHHHHccccccccEEEEEEcccHHHHHHHHHHHccccccccccccEcccHHHHHHHHHcHHHHcccccccc

MMTDEDILKKLEDSTKNATRHQLETLQSILERQsgvrylqpylsgccapidaatykrtvplscyddyadhinqlaggdhgqndqpllavdpLVCFfyssgtssmkpklipyfDSALSKAASQIAIQGSVAILrrlfppkhdvnKILFFIYsdnktttkAGFKVMAasafplqgssnenLSQLirhssprevivgsnFQHQMYCHLLcglrnyefidgifspyaiGLIGAFSFFESKWEQLCDdlengypclditevAMRDSVIevlggpqpdlsKRIRsicgesnwsgifsklwpnvryikCVTTGSMSQYCSKIKyyagevpvlggdyfasecyvginldiaqppqttrfvmlptaayfeflpfdmekneavgeetvdfsgvEIGKMYEVVVTTYRGFYRYRLGDIVKVVDFynsspqvefvmrapkssfeiiSERDLMSAMESFQMMLRNVMAVEIVEFAgytnlesspkKLMIFVEIREGCTKLRDSVAILRRCCSSLEDAFGSIYKvqrdrgeisplsvsivkpgtFDRLLQVAIEkgapasqykppkivrnREIVEFMEGCSLVTVRLDSLDG

MMTDEDILKKledstknatRHQLETLQSILERQSGVRYLQPYLSGCCAPIDAATYKRTVPLSCYDDYADHINQLAGGDHGQNDQPLLAVDPLVCFFYSSGTSSMKPKLIPYFDSALSKAASQIAIQGSVAILRRLFPPKHDVNKILFFIYSDNKTTTKAGFKVMAASAFPLQGSSNENLSQLIRHSSPREVIVGSNFQHQMYCHLLCGLRNYEFIDGIFSPYAIGLIGAFSFFESKWEQLCDDLENGYPCLDITEVAMRDSVIEVlggpqpdlskrIRSICGEsnwsgifsklwpNVRYIKCVTTGSMSQYCSKIKYYAGEVPVLGGDYFASECYVGINLDIAQPPQTTRFVMLPTAAYFEFLPFDMEKNEAVGeetvdfsgveigKMYEVVVTTYRGFYRYRLGDIVKVVDFYNSSpqvefvmrapkSSFEIISERDLMSAMESFQMMLRNVMAVEIVEFAGytnlesspkKLMIFVEIREGCTKLRDSVAILRRCCSSLEDAFGSIykvqrdrgeisplsvsivkpgTFDRLLQVAIEkgapasqykppkiVRNREIVEfmegcslvtvrldsldg

***************************SILERQSGVRYLQPYLSGCCAPIDAATYKRTVPLSCYDDYADHINQLAGGDHGQNDQPLLAVDPLVCFFYSSGTSSMKPKLIPYFDSALSKAASQIAIQGSVAILRRLFPPKHDVNKILFFIYSDNKTTTKAGFKVMAASAF********************EVIVGSNFQHQMYCHLLCGLRNYEFIDGIFSPYAIGLIGAFSFFESKWEQLCDDLENGYPCLDITEVAMRDSVIEVLGGPQPDLSKRIRSICGESNWSGIFSKLWPNVRYIKCVTTGSMSQYCSKIKYYAGEVPVLGGDYFASECYVGINLDIAQPPQTTRFVMLPTAAYFEFLPFDMEKNEAVGEETVDFSGVEIGKMYEVVVTTYRGFYRYRLGDIVKVVDFYNSSPQVEFVMRAPKSSFEIISERDLMSAMESFQMMLRNVMAVEIVEFAGYTNLESSPKKLMIFVEIREGCTKLRDSVAILRRCCSSLEDAFGSIYKVQRDRGEISPLSVSIVKPGTFDRLLQVAIEKGAPASQYKPPKIVRNREIVEFMEGCSLVTVRL*****

****EDILKKLEDSTKNATRHQLETLQSILERQSGVRYLQPYLSGCCAPIDAATYKRTVPLSCYDDYADHINQLAGGDHGQNDQPLLAVDPLVCFF**********KLIPYFDSALSKAASQIAIQGSVAILRRLFPPKHDVNKILFFIYSDNKTTTKAGFKVMAASAFPLQGSSNENLSQLIRHSSPREVIVGSNFQHQMYCHLLCGLRNYEFIDGIFSPYAIGLIGAFSFFESKWEQLCDDLENGYPCLDITEVAMRDSVIEVLGGPQPDLSKRIRSICGESNWSGIFSKLWPNVRYIKCVTTGSMSQYCSKIKYYAGEVPVLGGDYFASECYVGINLDIAQPPQTTRFVMLPTAAYFEFLPFDMEKNEAVGEETVDFSGVEIGKMYEVVVTTYRGFYRYRLGDIVKVVDFYNSSPQVEFVMRAPKSSFEIISERDLMSAMESFQMMLRNVMAVEIVEFAGYTNLESSPKKLMIFVEIREGCTKLRDSVAILRRCCSSLEDAFGSIYKVQRDRGEISPLSVSIVKPGTFDRLLQ*************PPKIVRNREIVEFMEGCSLVTVRL*****

*MTDEDILKKLEDSTKNATRHQLETLQSILERQSGVRYLQPYLSGCCAPIDAATYKRTVPLSCYDDYADHINQLAGGDHGQNDQPLLAVDPLVCFFYSSGTSSMKPKLIPYFDSALSKAASQIAIQGSVAILRRLFPPKHDVNKILFFIYSDNKTTTKAGFKVMAASAFPLQGSSNENLSQLIRHSSPREVIVGSNFQHQMYCHLLCGLRNYEFIDGIFSPYAIGLIGAFSFFESKWEQLCDDLENGYPCLDITEVAMRDSVIEVLGGPQPDLSKRIRSICGESNWSGIFSKLWPNVRYIKCVTTGSMSQYCSKIKYYAGEVPVLGGDYFASECYVGINLDIAQPPQTTRFVMLPTAAYFEFLPFDMEKNEAVGEETVDFSGVEIGKMYEVVVTTYRGFYRYRLGDIVKVVDFYNSSPQVEFVMRAPKSSFEIISERDLMSAMESFQMMLRNVMAVEIVEFAGYTNLESSPKKLMIFVEIREGCTKLRDSVAILRRCCSSLEDAFGSIYKVQRDRGEISPLSVSIVKPGTFDRLLQVAIEKGAPASQYKPPKIVRNREIVEFMEGCSLVTVRLD****

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		578	2.2.26 [Sep-21-2011]
Q60EY1		488	Probable indole-3-acetic	no	no	0.667	0.790	0.490	1e-107
Q6I581		581	Probable indole-3-acetic	no	no	0.930	0.925	0.337	2e-87
Q9FZ87		609	Indole-3-acetic acid-amid	yes	no	0.946	0.898	0.315	2e-84
Q0D4Z6		605	Probable indole-3-acetic	no	no	0.949	0.907	0.322	3e-83
A3BLS0		605	Probable indole-3-acetic	N/A	no	0.949	0.907	0.322	3e-83
O22190		595	Indole-3-acetic acid-amid	no	no	0.946	0.919	0.319	6e-82
Q9LQ68		597	Indole-3-acetic acid-amid	no	no	0.949	0.919	0.297	5e-80
Q654M1		620	Probable indole-3-acetic	no	no	0.948	0.883	0.316	6e-80
Q9LYU4		575	4-substituted benzoates-g	no	no	0.939	0.944	0.305	8e-80
O82333		590	Probable indole-3-acetic	no	no	0.934	0.915	0.313	2e-79

>sp\|Q60EY1\|GH36_ORYSJ Probable indole-3-acetic acid-amido synthetase GH3.6 OS=Oryza sativa subsp. japonica GN=GH3.6 PE=2 SV=2	Back alignment and function desciption

 Score =  389 bits (999), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 198/404 (49%), Positives = 276/404 (68%), Gaps = 18/404 (4%)

Query: 164 MAASAFPLQGSSNENLSQLIRHS-SPREVIVGSNFQHQMYCHLLCGLRNYEFIDGIFSPY 222
           MAA+A+ ++ S     S ++    SP EVI+G++ Q QMYCHLLCGLR ++ +D I +PY
Sbjct: 1   MAATAWGIRSSGIRGASPVMSACVSPAEVILGADHQQQMYCHLLCGLRRWDAVDCIRAPY 60

Query: 223 AIGLIGAFSFFESKWEQLCDDLENGYPCLD-ITEVAMRDSVIE-VLGGPQPDLSKRIRSI 280
           A  L  A    +SKW QLCDDLE G  C D +T+ AMR +V + VL GP P+L+ R+R I
Sbjct: 61  AAALARALRLLQSKWRQLCDDLECGTVCADVVTDAAMRGAVQDGVLAGPCPELAGRVRRI 120

Query: 281 CGESNWSGIFSKLWPNVRYIKCVTTGSMSQYCSKIKYYAGE-VPVLGGDYFASECYVGIN 339
           C   +W G+  +LWP+ RYI CVTTG+M QY   IK++AGE +PVLG DY ASEC +GIN
Sbjct: 121 CERDDWRGVLRQLWPDARYISCVTTGTMEQYFPAIKHFAGEALPVLGTDYLASECAIGIN 180

Query: 340 LDIAQPPQTTRFVMLPTAAYFEFLPFDME--KNEAVGEETVDFSGVEIGKMYEVVVTTYR 397
           L+   PP+ T +V+LP AAYFEF+PFDM+     A   E VD +GVE GK YE+V TT+R
Sbjct: 181 LERTSPPEETTYVLLPRAAYFEFIPFDMDAAGRGAAAAEPVDIAGVEAGKTYELVATTFR 240

Query: 398 GFYRYRLGDIVKVVDFYNSSPQVEFVMRA--PKSSFEIISERDLMSAMESFQMMLRNVMA 455
           G YRY++GD+VK+  F++SSP+++FV RA  P+   E+++ERD+M+AM++FQ+ML++   
Sbjct: 241 GLYRYKVGDVVKIAGFHHSSPRLQFVTRAPPPQEHGEVLTERDVMAAMDTFQLMLKD--G 298

Query: 456 VEIVEFAGYT----NLESSPKKLMIFVEIREGCTKLRD---SVAILRRCCSSLEDAFGSI 508
            E++EFA +       +   +   I VE+  G +KL D   S A LRRC + LE   G  
Sbjct: 299 GEVIEFAAFIIDGDGGQRRRRCATIAVEVSNG-SKLLDHERSAAFLRRCTAPLEGCLGGA 357

Query: 509 YKVQRDRGEISPLSVSIVKPGTFDRLLQVAIEKGAPASQYKPPK 552
           Y++ R  G+++PL V++V+PGTFDRL + AI  GAPA+QYKPP+
Sbjct: 358 YRLSRATGDVAPLEVAVVRPGTFDRLAEAAIRGGAPANQYKPPR 401

May catalyze the synthesis of indole-3-acetic acid (IAA)-amino acid conjugates, providing a mechanism for the plant to cope with the presence of excess auxin.
Oryza sativa subsp. japonica (taxid: 39947)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -

>sp\|Q6I581\|GH35_ORYSJ Probable indole-3-acetic acid-amido synthetase GH3.5 OS=Oryza sativa subsp. japonica GN=GH3.5 PE=2 SV=1	Back alignment and function description

>sp\|Q9FZ87\|GH317_ARATH Indole-3-acetic acid-amido synthetase GH3.17 OS=Arabidopsis thaliana GN=GH3.17 PE=1 SV=1	Back alignment and function description

>sp\|Q0D4Z6\|GH38_ORYSJ Probable indole-3-acetic acid-amido synthetase GH3.8 OS=Oryza sativa subsp. japonica GN=GH3.8 PE=2 SV=1	Back alignment and function description

>sp\|A3BLS0\|GH38_ORYSI Probable indole-3-acetic acid-amido synthetase GH3.8 OS=Oryza sativa subsp. indica GN=GH3.8 PE=2 SV=2	Back alignment and function description

>sp\|O22190\|GH33_ARATH Indole-3-acetic acid-amido synthetase GH3.3 OS=Arabidopsis thaliana GN=GH3.3 PE=1 SV=1	Back alignment and function description

>sp\|Q9LQ68\|GH34_ARATH Indole-3-acetic acid-amido synthetase GH3.4 OS=Arabidopsis thaliana GN=GH3.4 PE=1 SV=1	Back alignment and function description

>sp\|Q654M1\|GH37_ORYSJ Probable indole-3-acetic acid-amido synthetase GH3.7 OS=Oryza sativa subsp. japonica GN=GH3.7 PE=2 SV=2	Back alignment and function description

>sp\|Q9LYU4\|GH312_ARATH 4-substituted benzoates-glutamate ligase GH3.12 OS=Arabidopsis thaliana GN=GH3.12 PE=1 SV=1	Back alignment and function description

>sp\|O82333\|GH31_ARATH Probable indole-3-acetic acid-amido synthetase GH3.1 OS=Arabidopsis thaliana GN=GH3.1 PE=2 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		578
224131296		578	GH3 family protein [Populus trichocarpa]	0.989	0.989	0.667	0.0
225436867		578	PREDICTED: probable indole-3-acetic acid	0.987	0.987	0.648	0.0
356504890		576	PREDICTED: probable indole-3-acetic acid	0.984	0.987	0.624	0.0
255638272		576	unknown [Glycine max]	0.984	0.987	0.624	0.0
218196075		638	hypothetical protein OsI_18426 [Oryza sa	0.961	0.871	0.468	1e-150
115462041		429	Os05g0143800 [Oryza sativa Japonica Grou	0.688	0.927	0.487	1e-109
82592860		488	RecName: Full=Probable indole-3-acetic a	0.667	0.790	0.490	1e-105
53749339		486	unknown protein [Oryza sativa Japonica G	0.664	0.790	0.490	1e-104
168023587		599	predicted protein [Physcomitrella patens	0.958	0.924	0.349	1e-88
449442409		598	PREDICTED: indole-3-acetic acid-amido sy	0.941	0.909	0.332	3e-88

>gi\|224131296\|ref\|XP_002321049.1\| GH3 family protein [Populus trichocarpa] gi\|222861822\|gb\|EEE99364.1\| GH3 family protein [Populus trichocarpa]	Back alignment and taxonomy information

 Score =  813 bits (2101), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 389/583 (66%), Positives = 470/583 (80%), Gaps = 11/583 (1%)

Query: 2   MTDEDILKKLEDSTKNATRHQLETLQSILERQSGVRYLQPYLSGCCAPIDAATYKRTVPL 61
           MT +++ + LED TKNA  HQL+TL SIL+ Q+ V YLQPYLS C AP+DAAT++  VPL
Sbjct: 1   MTYDELDRNLEDLTKNAAHHQLQTLHSILQHQASVGYLQPYLSACHAPVDAATFRSQVPL 60

Query: 62  SCYDDYADHINQLAGGDHGQNDQPLLAVDPLVCFFYSSGTSSMKPKLIPYFDSALSKAAS 121
           S YDDY   INQLA GD   + QPLL+ DPL+CFFYSSGTS+MKPKLIPYFDSALSKAAS
Sbjct: 61  SSYDDYFHLINQLANGDIDHH-QPLLSADPLLCFFYSSGTSTMKPKLIPYFDSALSKAAS 119

Query: 122 QIAIQGSVAILRRLFPPKHDVNKILFFIYSDNKTTTKAGFKVMAASAFPLQGS-SNENLS 180
             A QGS AI R L PP+ +VNKIL+F+Y+D+  TT+ GFKVMAAS +PLQG+ S  N S
Sbjct: 120 YNAHQGSAAIFRNLVPPRPEVNKILWFLYADDAPTTRGGFKVMAASTYPLQGNKSRSNWS 179

Query: 181 QLIRHSSPREVIVGSNFQHQMYCHLLCGLRNYEFIDGIFSPYAIGLIGAFSFFESKWEQL 240
           Q +   SPREV+ GSN + QMYCHLLC LR+++ IDGI + YA GLI AFS  ESKWE+L
Sbjct: 180 QTLSCISPREVVFGSNIKQQMYCHLLCALRSFDIIDGIRAAYAAGLIRAFSLLESKWEKL 239

Query: 241 CDDLENGYPCLDITEVAMRDSVIEVLGGPQPDLSKRIRSICGESNWSGIFSKLWPNVRYI 300
           CDDLE+G+P L+I + AM++SV+E LGGPQ DLS+RIR IC ESNW GI SKLWPNVRY+
Sbjct: 240 CDDLESGFPSLEIGDAAMKESVVEFLGGPQVDLSRRIREICAESNWGGILSKLWPNVRYV 299

Query: 301 KCVTTGSMSQYCSKIKYYAGEVPVLGGDYFASECYVGINLDIAQPPQTTRFVMLPTAAYF 360
           K VTTGSM QY SK+KYYAG+V +LGGDYFASEC +GINLDI QPP++TRFVMLPT AYF
Sbjct: 300 KSVTTGSMKQYYSKLKYYAGDVMILGGDYFASECCLGINLDIQQPPESTRFVMLPTTAYF 359

Query: 361 EFLPFDMEKNEAVGEETVDFSGVEIGKMYEVVVTTYRGFYRYRLGDIVKVVDFYNSSPQV 420
           EFLPFD+ ++  VGEETVDFSGV++GKMYEV VTTYRG YRYRLGDIV+VV F+NSSP V
Sbjct: 360 EFLPFDLNESSVVGEETVDFSGVKVGKMYEVAVTTYRGLYRYRLGDIVRVVGFHNSSPLV 419

Query: 421 EFVMRAPKSSFEIISERDLMSAMESFQMMLRNVMAVEIVEFAGYTNLESSPKKLMIFVEI 480
           EFVMRAPK+ +EII+E+DLMSAMESFQ    + MA E+VEFA +++ E SPK+L +F+E 
Sbjct: 420 EFVMRAPKTGYEIITEKDLMSAMESFQ----HSMAAEVVEFASFSDFELSPKRLKVFIEF 475

Query: 481 REGC-----TKLRDSVAILRRCCSSLEDAFGSIYKVQRDRGEISPLSVSIVKPGTFDRLL 535
           REGC      KL+ SV  L+RCCSSLE+  G IYKVQ+DRGEI PL VS+V+ G+FD +L
Sbjct: 476 REGCDFLQEEKLQGSVEALQRCCSSLENGLGEIYKVQKDRGEIGPLLVSVVRSGSFDGIL 535

Query: 536 QVAIEKGAPASQYKPPKIVRNREIVEFMEGCSLVTVRLDSLDG 578
           Q+AI+ GAPA QYKPPKI+RNREIV+FME  +++T+ LDS  G
Sbjct: 536 QMAIKNGAPAGQYKPPKIIRNREIVDFMEESAVLTISLDSFHG 578

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|225436867\|ref\|XP_002271002.1\| PREDICTED: probable indole-3-acetic acid-amido synthetase GH3.6 [Vitis vinifera] gi\|296086675\|emb\|CBI32310.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|356504890\|ref\|XP_003521227.1\| PREDICTED: probable indole-3-acetic acid-amido synthetase GH3.6-like [Glycine max]	Back alignment and taxonomy information

>gi\|255638272\|gb\|ACU19449.1\| unknown [Glycine max]	Back alignment and taxonomy information

>gi\|218196075\|gb\|EEC78502.1\| hypothetical protein OsI_18426 [Oryza sativa Indica Group]	Back alignment and taxonomy information

>gi\|115462041\|ref\|NP_001054620.1\| Os05g0143800 [Oryza sativa Japonica Group] gi\|113578171\|dbj\|BAF16534.1\| Os05g0143800 [Oryza sativa Japonica Group]	Back alignment and taxonomy information

>gi\|82592860\|sp\|Q60EY1.2\|GH36_ORYSJ RecName: Full=Probable indole-3-acetic acid-amido synthetase GH3.6; AltName: Full=Auxin-responsive GH3-like protein 6; Short=OsGH3-6	Back alignment and taxonomy information

>gi\|53749339\|gb\|AAU90198.1\| unknown protein [Oryza sativa Japonica Group]	Back alignment and taxonomy information

>gi\|168023587\|ref\|XP_001764319.1\| predicted protein [Physcomitrella patens subsp. patens] gi\|16610205\|dbj\|BAB71764.1\| GH3-like protein 1 [Physcomitrella patens] gi\|40644908\|emb\|CAD22056.2\| GH3-like protein [Physcomitrella patens] gi\|48958237\|emb\|CAD42871.1\| GH3-like protein [Physcomitrella patens] gi\|162684471\|gb\|EDQ70873.1\| predicted protein [Physcomitrella patens subsp. patens]	Back alignment and taxonomy information

>gi\|449442409\|ref\|XP_004138974.1\| PREDICTED: indole-3-acetic acid-amido synthetase GH3.5-like [Cucumis sativus] gi\|449477861\|ref\|XP_004155145.1\| PREDICTED: indole-3-acetic acid-amido synthetase GH3.5-like [Cucumis sativus]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		578
UNIPROTKB\|Q60EY1		488	GH3.6 "Probable indole-3-aceti	0.667	0.790	0.490	1.1e-103
TAIR\|locus:2010484		609	GH3.17 [Arabidopsis thaliana (	0.709	0.673	0.337	1.4e-93
UNIPROTKB\|Q6I581		581	GH3.5 "Probable indole-3-aceti	0.937	0.932	0.337	3.9e-83
TAIR\|locus:2058588		595	GH3.3 [Arabidopsis thaliana (t	0.944	0.917	0.323	3.7e-80
TAIR\|locus:2202832		597	GH3.4 [Arabidopsis thaliana (t	0.944	0.914	0.306	3.8e-78
TAIR\|locus:2125571		591	DFL2 "DWARF IN LIGHT 2" [Arabi	0.968	0.947	0.308	9e-77
TAIR\|locus:2060500		590	GH3.1 "AT2G14960" [Arabidopsis	0.934	0.915	0.320	1.9e-76
TAIR\|locus:2201170		578	AT1G23160 [Arabidopsis thalian	0.939	0.939	0.298	2.4e-76
UNIPROTKB\|Q53P49		613	GH3.12 "Probable indole-3-acet	0.624	0.588	0.321	4.6e-76
TAIR\|locus:2008134		573	AT1G48660 "AT1G48660" [Arabido	0.934	0.942	0.303	6.3e-76

UNIPROTKB\|Q60EY1 GH3.6 "Probable indole-3-acetic acid-amido synthetase GH3.6" [Oryza sativa Japonica Group (taxid:39947)]	Back alignment and assigned GO terms

 Score = 999 (356.7 bits), Expect = 1.1e-103, Sum P(2) = 1.1e-103
 Identities = 198/404 (49%), Positives = 278/404 (68%)

Query:   164 MAASAFPLQGSSNENLSQLIRHS-SPREVIVGSNFQHQMYCHLLCGLRNYEFIDGIFSPY 222
             MAA+A+ ++ S     S ++    SP EVI+G++ Q QMYCHLLCGLR ++ +D I +PY
Sbjct:     1 MAATAWGIRSSGIRGASPVMSACVSPAEVILGADHQQQMYCHLLCGLRRWDAVDCIRAPY 60

Query:   223 AIGLIGAFSFFESKWEQLCDDLENGYPCLDI-TEVAMRDSVIE-VLGGPQPDLSKRIRSI 280
             A  L  A    +SKW QLCDDLE G  C D+ T+ AMR +V + VL GP P+L+ R+R I
Sbjct:    61 AAALARALRLLQSKWRQLCDDLECGTVCADVVTDAAMRGAVQDGVLAGPCPELAGRVRRI 120

Query:   281 CGESNWSGIFSKLWPNVRYIKCVTTGSMSQYCSKIKYYAGE-VPVLGGDYFASECYVGIN 339
             C   +W G+  +LWP+ RYI CVTTG+M QY   IK++AGE +PVLG DY ASEC +GIN
Sbjct:   121 CERDDWRGVLRQLWPDARYISCVTTGTMEQYFPAIKHFAGEALPVLGTDYLASECAIGIN 180

Query:   340 LDIAQPPQTTRFVMLPTAAYFEFLPFDMEK--NEAVGEETVDFSGVEIGKMYEVVVTTYR 397
             L+   PP+ T +V+LP AAYFEF+PFDM+     A   E VD +GVE GK YE+V TT+R
Sbjct:   181 LERTSPPEETTYVLLPRAAYFEFIPFDMDAAGRGAAAAEPVDIAGVEAGKTYELVATTFR 240

Query:   398 GFYRYRLGDIVKVVDFYNSSPQVEFVMRAP--KSSFEIISERDLMSAMESFQMMLRNVMA 455
             G YRY++GD+VK+  F++SSP+++FV RAP  +   E+++ERD+M+AM++FQ+ML++   
Sbjct:   241 GLYRYKVGDVVKIAGFHHSSPRLQFVTRAPPPQEHGEVLTERDVMAAMDTFQLMLKD--G 298

Query:   456 VEIVEFAGYT-NLESSPKK---LMIFVEIREGCTKLRD---SVAILRRCCSSLEDAFGSI 508
              E++EFA +  + +   ++     I VE+  G +KL D   S A LRRC + LE   G  
Sbjct:   299 GEVIEFAAFIIDGDGGQRRRRCATIAVEVSNG-SKLLDHERSAAFLRRCTAPLEGCLGGA 357

Query:   509 YKVQRDRGEISPLSVSIVKPGTFDRLLQVAIEKGAPASQYKPPK 552
             Y++ R  G+++PL V++V+PGTFDRL + AI  GAPA+QYKPP+
Sbjct:   358 YRLSRATGDVAPLEVAVVRPGTFDRLAEAAIRGGAPANQYKPPR 401

GO:0009416 "response to light stimulus" evidence=IC

GO:0009733 "response to auxin stimulus" evidence=IC

TAIR\|locus:2010484 GH3.17 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

UNIPROTKB\|Q6I581 GH3.5 "Probable indole-3-acetic acid-amido synthetase GH3.5" [Oryza sativa Japonica Group (taxid:39947)]	Back alignment and assigned GO terms

TAIR\|locus:2058588 GH3.3 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2202832 GH3.4 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2125571 DFL2 "DWARF IN LIGHT 2" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2060500 GH3.1 "AT2G14960" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2201170 AT1G23160 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

UNIPROTKB\|Q53P49 GH3.12 "Probable indole-3-acetic acid-amido synthetase GH3.12" [Oryza sativa Japonica Group (taxid:39947)]	Back alignment and assigned GO terms

TAIR\|locus:2008134 AT1G48660 "AT1G48660" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9FZ87	GH317_ARATH	6, ., 3, ., 2, ., -	0.3150	0.9463	0.8981	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	6.3.2	LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		578
pfam03321		513	pfam03321, GH3, GH3 auxin-responsive promoter	1e-110
PLN02247		606	PLN02247, PLN02247, indole-3-acetic acid-amido syn	1e-99
PLN02620		612	PLN02620, PLN02620, indole-3-acetic acid-amido syn	2e-97
PLN02249		597	PLN02249, PLN02249, indole-3-acetic acid-amido syn	1e-96

>gnl\|CDD\|217492 pfam03321, GH3, GH3 auxin-responsive promoter	Back alignment and domain information

 Score =  339 bits (872), Expect = e-110
 Identities = 172/571 (30%), Positives = 259/571 (45%), Gaps = 74/571 (12%)

Query: 6   DILKKLEDSTKNATRHQLETLQSILERQSGVRYLQPY-LSGCCAPIDAATYKRTVPLSCY 64
            +LK++E  T NA   Q E L+ ILER +   Y + Y  SG         +K+ VP+  Y
Sbjct: 1   KVLKEIELFTSNAVEVQEEVLREILERNADTEYGKKYGFSGIT---SYDDFKKRVPVVTY 57

Query: 65  DDYADHINQLAGGDHGQNDQPLLAVDPLVCFFYSSGTSSMKPKLIPYFDSALSKAASQIA 124
           +D   +I ++A G+       +L   P+  F  SSGT+  K K IP  D  L +     A
Sbjct: 58  EDLKPYIERIANGE-----PSILWPGPITYFALSSGTTGGKSKFIPVTDELLERFHFLGA 112

Query: 125 IQGSVAILRRLFPPKHDVNKILFFIYSDNKTT--TKAGFKVMAASAFPLQGSSNENLSQL 182
           +   +  L    P      K L    S  K    T  G      S          NL   
Sbjct: 113 LAVLLLYLNNNPPGLFFEGKSLGLGGSFVKPELKTPGGIPAGDLSTILY-----RNLPFW 167

Query: 183 IRHS-SPREVIVGSNFQHQMYCHLLCGLRNYEFIDGIFSPYAIGLIGAFSFFESKWEQLC 241
            +   SP EVI+  +     YC LLCGL   + +  I    A  L+    F E  W++LC
Sbjct: 168 FKLYTSPDEVILCIDDWQSKYCALLCGLIRED-VGRISGVPAWMLVLLIRFLEKHWKELC 226

Query: 242 DDLENGYPCLDITEVAMRDSVIEVLGGPQPDLSKRIRSICGESNWSGIFSKLWPNVRYIK 301
            D+  G                     P P+L+  I   C     S I  +LWPN++Y+ 
Sbjct: 227 TDIRTGTL------------------RPNPELADLIEQEC-----SKIIKELWPNLKYVF 263

Query: 302 CVTTGSMSQYCSKIKYYAGEVPVLGGDYFASECYVGINLDIAQPPQTTRFVMLPTAAYFE 361
               GSM  Y  K++   G +P+    Y ASE + GINLD    P+   + ++P + +FE
Sbjct: 264 VWGGGSMEPYRPKLEKLLGGLPLYSETYAASEGFFGINLD----PEDVSYTLMPNSGFFE 319

Query: 362 FLPFDMEKNEAVGEETVDFSGVEIGKMYEVVVTTYRGFYRYRLGDIVKVVDFYNSSPQVE 421
           F+P D + +E    + VD   VE+GK YE+V+TT+ G YRYR+GD+V+V  FYN +PQ E
Sbjct: 320 FIPVDEDGDED--PKIVDLVEVELGKNYELVITTFAGLYRYRIGDVVRVTGFYNYTPQFE 377

Query: 422 FVMRAPKSSF-----EIISERDLMSAMESFQMMLRNVMA---VEIVEFAGYTNLESSPKK 473
           FV R           E ++E +L  A++       N +    +EIVE+    +  + P  
Sbjct: 378 FVGR--TKHVLSLFGEKLTEEELEKAVK-------NALESTGLEIVEYTSAPDTSTEPGH 428

Query: 474 LMIFVEIREGCTKLRDSVAILRRCCSSLEDAF--GSIYKVQRDRGEISPLSVSIVKPGTF 531
            + + E+            +L  C  +L++A    S Y+  R++G + PL + +V PGTF
Sbjct: 429 YVHYWEL-------EFKPEVLEECARALDEALQENSDYRRAREKGSLGPLEIRVVPPGTF 481

Query: 532 DRLLQVAIEK-GAPASQYKPPKIVRNREIVE 561
              ++    K G    QYK P++ + RE +E
Sbjct: 482 YEWMKAFKGKLGGSIGQYKVPRLSKEREYLE 512

Length = 513

>gnl\|CDD\|165890 PLN02247, PLN02247, indole-3-acetic acid-amido synthetase	Back alignment and domain information

>gnl\|CDD\|166261 PLN02620, PLN02620, indole-3-acetic acid-amido synthetase	Back alignment and domain information

>gnl\|CDD\|177891 PLN02249, PLN02249, indole-3-acetic acid-amido synthetase	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		578
PLN02620		612	indole-3-acetic acid-amido synthetase	100.0
PLN02247		606	indole-3-acetic acid-amido synthetase	100.0
PLN02249		597	indole-3-acetic acid-amido synthetase	100.0
PF03321		528	GH3: GH3 auxin-responsive promoter; InterPro: IPR0	100.0
COG1541		438	PaaK Coenzyme F390 synthetase [Coenzyme metabolism	99.95
TIGR03335		445	F390_ftsA coenzyme F390 synthetase. This enzyme, c	99.93
TIGR02155		422	PA_CoA_ligase phenylacetate-CoA ligase. Phenylacet	99.88
TIGR02304		430	aden_form_hyp probable adenylate-forming enzyme. M	99.81
PRK00174		637	acetyl-CoA synthetase; Provisional	99.19
TIGR02188		625	Ac_CoA_lig_AcsA acetate--CoA ligase. This model de	99.14
PRK06060		705	acyl-CoA synthetase; Validated	99.09
PLN02654		666	acetate-CoA ligase	99.02
PRK06334		539	long chain fatty acid--[acyl-carrier-protein] liga	99.02
TIGR01734		502	D-ala-DACP-lig D-alanine--poly(phosphoribitol) lig	99.02
PRK09274		552	peptide synthase; Provisional	99.0
PRK04319		570	acetyl-CoA synthetase; Provisional	98.97
PLN02574		560	4-coumarate--CoA ligase-like	98.97
PRK04813		503	D-alanine--poly(phosphoribitol) ligase subunit 1;	98.96
PRK07514		504	malonyl-CoA synthase; Validated	98.96
PRK09088		488	acyl-CoA synthetase; Validated	98.96
PRK06187		521	long-chain-fatty-acid--CoA ligase; Validated	98.96
PRK05677		562	long-chain-fatty-acid--CoA ligase; Validated	98.95
PRK13295		547	cyclohexanecarboxylate-CoA ligase; Reviewed	98.94
TIGR02316		628	propion_prpE propionate--CoA ligase. This family c	98.93
PRK06155		542	crotonobetaine/carnitine-CoA ligase; Provisional	98.93
PRK10524		629	prpE propionyl-CoA synthetase; Provisional	98.93
PRK07529		632	AMP-binding domain protein; Validated	98.93
PRK07788		549	acyl-CoA synthetase; Validated	98.92
PRK05605		573	long-chain-fatty-acid--CoA ligase; Validated	98.89
PRK06164		540	acyl-CoA synthetase; Validated	98.88
TIGR03205		541	pimA dicarboxylate--CoA ligase PimA. PimA, a membe	98.88
PRK07656		513	long-chain-fatty-acid--CoA ligase; Validated	98.88
PRK03584		655	acetoacetyl-CoA synthetase; Provisional	98.88
PRK06145		497	acyl-CoA synthetase; Validated	98.87
PRK08314		546	long-chain-fatty-acid--CoA ligase; Validated	98.86
PRK08316		523	acyl-CoA synthetase; Validated	98.85
PRK08974		560	long-chain-fatty-acid--CoA ligase; Validated	98.83
PRK07786		542	long-chain-fatty-acid--CoA ligase; Validated	98.83
PRK05852		534	acyl-CoA synthetase; Validated	98.8
PRK07059		557	Long-chain-fatty-acid--CoA ligase; Validated	98.8
PLN02330		546	4-coumarate--CoA ligase-like 1	98.79
PRK13382		537	acyl-CoA synthetase; Provisional	98.79
TIGR01733		408	AA-adenyl-dom amino acid adenylation domain. This	98.79
PRK06839		496	acyl-CoA synthetase; Validated	98.78
PRK08633		1146	2-acyl-glycerophospho-ethanolamine acyltransferase	98.78
TIGR01217		652	ac_ac_CoA_syn acetoacetyl-CoA synthase. This enzym	98.77
PRK07768		545	long-chain-fatty-acid--CoA ligase; Validated	98.77
PRK07867		529	acyl-CoA synthetase; Validated	98.77
COG0318		534	CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid l	98.75
PRK12406		509	long-chain-fatty-acid--CoA ligase; Provisional	98.75
TIGR03208		538	cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase.	98.75
PLN02246		537	4-coumarate--CoA ligase	98.74
PRK07787		471	acyl-CoA synthetase; Validated	98.73
PRK07470		528	acyl-CoA synthetase; Validated	98.73
PRK10252		1296	entF enterobactin synthase subunit F; Provisional	98.72
PRK12583		558	acyl-CoA synthetase; Provisional	98.72
PLN03051		499	acyl-activating enzyme; Provisional	98.71
PRK07769		631	long-chain-fatty-acid--CoA ligase; Validated	98.71
COG0365		528	Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid l	98.7
PRK07638		487	acyl-CoA synthetase; Validated	98.7
PRK05851		525	long-chain-fatty-acid--[acyl-carrier-protein] liga	98.69
PRK10946		536	entE enterobactin synthase subunit E; Provisional	98.69
PRK08751		560	putative long-chain fatty acyl CoA ligase; Provisi	98.67
PRK05850		578	acyl-CoA synthetase; Validated	98.65
TIGR02275		527	DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase. Prot	98.65
PRK12492		562	long-chain-fatty-acid--CoA ligase; Provisional	98.65
PRK08315		559	AMP-binding domain protein; Validated	98.64
TIGR02262		508	benz_CoA_lig benzoate-CoA ligase family. Character	98.64
PRK12467		3956	peptide synthase; Provisional	98.64
TIGR03098		515	ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosor	98.64
PRK13383		516	acyl-CoA synthetase; Provisional	98.63
PRK06710		563	long-chain-fatty-acid--CoA ligase; Validated	98.63
PLN02860		563	o-succinylbenzoate-CoA ligase	98.62
COG1021		542	EntE Peptide arylation enzymes [Secondary metaboli	98.61
PRK12467		3956	peptide synthase; Provisional	98.61
PRK12316		5163	peptide synthase; Provisional	98.61
PRK08279		600	long-chain-acyl-CoA synthetase; Validated	98.6
PRK06188		524	acyl-CoA synthetase; Validated	98.59
TIGR03443		1389	alpha_am_amid L-aminoadipate-semialdehyde dehydrog	98.57
PRK03640		483	O-succinylbenzoic acid--CoA ligase; Provisional	98.57
PF00501		417	AMP-binding: AMP-binding enzyme; InterPro: IPR0008	98.56
PRK05857		540	acyl-CoA synthetase; Validated	98.56
PLN02736		651	long-chain acyl-CoA synthetase	98.55
PTZ00237		647	acetyl-CoA synthetase; Provisional	98.55
PLN02387		696	long-chain-fatty-acid-CoA ligase family protein	98.54
TIGR01923		436	menE O-succinylbenzoate-CoA ligase. This model rep	98.54
PRK12316		5163	peptide synthase; Provisional	98.52
PRK13388		540	acyl-CoA synthetase; Provisional	98.52
PRK08008		517	caiC putative crotonobetaine/carnitine-CoA ligase;	98.51
PLN03052		728	acetate--CoA ligase; Provisional	98.51
PRK08043		718	bifunctional acyl-[acyl carrier protein] synthetas	98.51
PRK05691		4334	peptide synthase; Validated	98.51
COG1022		613	FAA1 Long-chain acyl-CoA synthetases (AMP-forming)	98.5
PRK07008		539	long-chain-fatty-acid--CoA ligase; Validated	98.49
PRK05620		576	long-chain-fatty-acid--CoA ligase; Validated	98.48
PRK05691		4334	peptide synthase; Validated	98.47
PTZ00342		746	acyl-CoA synthetase; Provisional	98.45
PRK06087		547	short chain acyl-CoA synthetase; Reviewed	98.45
PRK07824		358	O-succinylbenzoic acid--CoA ligase; Provisional	98.44
PRK08308		414	acyl-CoA synthetase; Validated	98.42
PRK06178		567	acyl-CoA synthetase; Validated	98.38
PRK06814		1140	acylglycerophosphoethanolamine acyltransferase; Pr	98.38
PLN03102		579	acyl-activating enzyme; Provisional	98.36
PRK06018		542	putative acyl-CoA synthetase; Provisional	98.34
PLN02861		660	long-chain-fatty-acid-CoA ligase	98.33
PRK08180		614	feruloyl-CoA synthase; Reviewed	98.3
PRK12582		624	acyl-CoA synthetase; Provisional	98.24
PLN02430		660	long-chain-fatty-acid-CoA ligase	98.23
PTZ00216		700	acyl-CoA synthetase; Provisional	98.2
KOG1177		596	consensus Long chain fatty acid acyl-CoA ligase [L	98.1
PRK13390		501	acyl-CoA synthetase; Provisional	98.08
PRK12476		612	putative fatty-acid--CoA ligase; Provisional	98.05
PRK08276		502	long-chain-fatty-acid--CoA ligase; Validated	98.03
PRK07798		533	acyl-CoA synthetase; Validated	97.93
PRK13391		511	acyl-CoA synthetase; Provisional	97.9
PRK09192		579	acyl-CoA synthetase; Validated	97.9
PRK07868		994	acyl-CoA synthetase; Validated	97.83
PF04443		365	LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR	97.82
TIGR02372		386	4_coum_CoA_lig 4-coumarate--CoA ligase, photoactiv	97.76
PLN02614		666	long-chain acyl-CoA synthetase	97.75
KOG1256		691	consensus Long-chain acyl-CoA synthetases (AMP-for	97.72
KOG1175		626	consensus Acyl-CoA synthetase [Lipid transport and	97.71
PRK07445		452	O-succinylbenzoic acid--CoA ligase; Reviewed	97.59
KOG1176		537	consensus Acyl-CoA synthetase [Lipid transport and	97.49
KOG1179		649	consensus Very long-chain acyl-CoA synthetase/fatt	97.39
KOG1180		678	consensus Acyl-CoA synthetase [Lipid transport and	97.19
PRK08162		545	acyl-CoA synthetase; Validated	97.17
PRK09029		458	O-succinylbenzoic acid--CoA ligase; Provisional	97.0
PF14535		96	AMP-binding_C_2: AMP-binding enzyme C-terminal dom	96.78
PLN02479		567	acetate-CoA ligase	96.72
COG1020		642	EntF Non-ribosomal peptide synthetase modules and	87.9
PRK09188		365	serine/threonine protein kinase; Provisional	83.25

>PLN02620 indole-3-acetic acid-amido synthetase	Back alignment and domain information

Probab=100.00  E-value=9.1e-128  Score=1054.32  Aligned_cols=557  Identities=32%  Similarity=0.609  Sum_probs=514.7

Q ss_pred             hHHHHHHHHHHHHhHHHHHHHHHHHHHHhccCChhhhhh-hcCCCCCCChhhHhhcCCCCchhhhHHHHHHHhCCCCCCC
Q 008073            4 DEDILKKLEDSTKNATRHQLETLQSILERQSGVRYLQPY-LSGCCAPIDAATYKRTVPLSCYDDYADHINQLAGGDHGQN   82 (578)
Q Consensus         4 ~~~~~~~~e~~~~~~~~~Q~~~L~~iL~~~~~T~ygr~~-f~~i~~~~s~~df~~~vPl~~Yed~~pyieR~~~Ge~~~~   82 (578)
                      +++.++.+|+.++||.++|+++|++||++|++|+|||+| |++|   +++++||++|||++|||++|||+||++||.   
T Consensus        21 ~~~~l~~ie~~t~~~~~vQ~~vL~~IL~~n~~Teyg~~~~f~~i---~~~~~F~~~VPv~~Yedl~pyI~Ri~~Ge~---   94 (612)
T PLN02620         21 NKKALQFIEDVTSNADEVQKRVLEEILSRNAHVEYLQRHGLNGR---TDRETFKKVMPVITYEDIQPDINRIANGDT---   94 (612)
T ss_pred             hHHHHHHHHHHHhCHHHHHHHHHHHHHHhcccChhHHhcCCCCC---CCHHHHHHhCCCccHHHhHHHHHHHHcCCC---
Confidence            366789999999999999999999999999999999999 9999   999999999999999999999999999987   


Q ss_pred             CCCcccCCCeeEEEecccCCCCcceeeecchhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEeccCccccCCCcE
Q 008073           83 DQPLLAVDPLVCFFYSSGTSSMKPKLIPYFDSALSKAASQIAIQGSVAILRRLFPPKHDVNKILFFIYSDNKTTTKAGFK  162 (578)
Q Consensus        83 ~~~vl~~~pi~~F~~TSGTT~G~~K~IP~T~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~gk~l~~~~~~~~~~t~~Gip  162 (578)
                       ++|||++||.+|+.|||||+|++|+||+|+++++.++.  ++.++..+++++ .|++..||.|||++.+.+.+|++|||
T Consensus        95 -s~vL~~~pi~~F~~SSGTT~g~~K~IP~t~e~l~~~~~--~~~~~~~~~~~~-~p~l~~Gk~~~~~~~~~~~~T~~Gip  170 (612)
T PLN02620         95 -SPILCSKPISEFLTSSGTSGGERKLMPTIEEELGRRSL--LYSLLMPVMSQF-VPGLEKGKGMYFLFIKSEAKTPGGLV  170 (612)
T ss_pred             -CCccCCCChhhhhhcCCCCCCceeeeecCHHHHHHHHH--HHHHHHHHHHhh-CCCcccCcEEEEEecccCccCCCCcc
Confidence             79999999999999999998899999999999998665  567777777775 48999999999999999999999999


Q ss_pred             EeecccccccCCCc-cc-c-cccccccCCchhhcCCChhHHHHHHHHhccccCCccceeeccchhhHHHHHHHHHHHHHH
Q 008073          163 VMAASAFPLQGSSN-EN-L-SQLIRHSSPREVIVGSNFQHQMYCHLLCGLRNYEFIDGIFSPYAIGLIGAFSFFESKWEQ  239 (578)
Q Consensus       163 ~G~~S~~~~~~~~~-~~-~-~~~~~~~~P~~~~~~~d~~~~~Y~~Ll~aL~~~~~l~~i~~~f~~~ll~~~~~l~~~w~~  239 (578)
                      +|++|+..++ +.. +. + ++...|++|.+++.++|..+++||||||+|.++++|..++++|+++|+.++++|+++|++
T Consensus       171 ~g~~st~~y~-s~~f~~~~~~~~~~~~sP~ev~~~~D~~qs~Y~~LLcgL~~~~~v~~v~svfa~~ll~a~~~Le~~w~~  249 (612)
T PLN02620        171 ARPVLTSYYK-SSHFKDRPYDPYTNYTSPNETILCPDSYQSMYSQMLCGLCQHKEVLRVGAVFASGFIRAIRFLEKHWTL  249 (612)
T ss_pred             cccccchhhh-hhhhhhcccccccceeCcHHhccCCCHHHHHHHHHHHHhhcchhhceEEeechHHHHHHHHHHHHHHHH
Confidence            9999999888 443 22 2 445689999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCCCCCChhHHHHHHHHHhCCCCHHHHHHHHHHhcCCCccCcccccCCCCceeEEEecCchHHHHHHHHHHh
Q 008073          240 LCDDLENGYPCLDITEVAMRDSVIEVLGGPQPDLSKRIRSICGESNWSGIFSKLWPNVRYIKCVTTGSMSQYCSKIKYYA  319 (578)
Q Consensus       240 l~~dI~~gti~~~i~~~~iR~~l~~~lg~p~p~rA~~L~~~~~~~~~~g~~~~lWP~L~~i~~~~~G~~~~y~~~l~~~~  319 (578)
                      ||+||++|++++++++|.+|++++++| +|||++|++|+++|.+.+|.||+++|||||++|+||++|+|++|.+.|+.|+
T Consensus       250 L~~DI~~G~ls~~itd~~~R~av~~~L-~p~pelA~~i~~~c~~~~w~gii~rLWP~lk~I~~~~tGsm~~Y~p~L~~y~  328 (612)
T PLN02620        250 LCRDIRTGTIDSQITDPSVREAVMKIL-KPDPKLADFVEAECRKESWQGIITRLWPNTKYVDVIVTGTMSQYIPTLDYYS  328 (612)
T ss_pred             HHHHHhcCCCCccCCCHHHHHHHHhhc-CCCHHHHHHHHHHhccccccCcHHHhCCCCcEEEEECCCCHHHHHHHHHHHc
Confidence            999999999999999999999999999 7999999999999999899999999999999999999999999999999999


Q ss_pred             CCCCccccccccCceeeeeecCCCCCCCCcceeccCCceEEEEeeCCCCCc------------cccCCceeeccccCCCc
Q 008073          320 GEVPVLGGDYFASECYVGINLDIAQPPQTTRFVMLPTAAYFEFLPFDMEKN------------EAVGEETVDFSGVEIGK  387 (578)
Q Consensus       320 g~v~~~~~~y~asEg~~~i~~~~~~~~~~~~~~l~~~~~f~EFip~~~~~~------------~~~~~~~l~~~ele~G~  387 (578)
                      ||+|+++.+|+||||+||+|++|.|+++...|.++|+.+||||||.++.+.            +.+++++|+++|||.|+
T Consensus       329 gglpl~~~~Y~ASE~~~ginl~P~~~p~~~sy~L~p~~~yFEFip~~~~~~~~~~~~~~~~~~~~~~~~~v~l~ev~~G~  408 (612)
T PLN02620        329 NGLPLVCTMYASSECYFGVNLNPLCKPSEVSYTLIPTMAYFEFLPVHRNNGVTNSISLPKSLNEKEQQELVDLVDVKLGQ  408 (612)
T ss_pred             CCCccccccccccceEEEeccCCCCCcccceeeecCCcEEEEEeeccCcccccccccccccccccccCccccHHHccCCC
Confidence            999999999999999999999999988889999999999999999875210            13457789999999999


Q ss_pred             eEEEEEccCCceeccccCCEEEEeeeeCCCCEEEEEeeCCC---ccccccCHHHHHHHHHHHHHHhccccCceeEEEEEe
Q 008073          388 MYEVVVTTYRGFYRYRLGDIVKVVDFYNSSPQVEFVMRAPK---SSFEIISERDLMSAMESFQMMLRNVMAVEIVEFAGY  464 (578)
Q Consensus       388 ~YelVvTt~~GLyRYr~GDvV~v~g~~~~~P~i~f~gR~~~---l~gEkv~e~~v~~av~~~~~~l~~~~g~~l~~f~~~  464 (578)
                      .|||||||.+||||||+||||+|+||||++|+|+|++|.+.   |.|||++|++|+.||.+|...|.+ .|+.|+||++.
T Consensus       409 ~YelvvTt~~GLyRYrlGDvv~V~Gf~n~~P~~~Fv~R~~~~lsi~gEK~tE~~l~~Av~~a~~~l~~-~~~~l~dyts~  487 (612)
T PLN02620        409 EYELVVTTYAGLYRYRVGDVLRVAGFKNKAPQFSFICRKNVVLSIDSDKTDEVELQNAVKNAVNHLVP-FDASLTEYTSY  487 (612)
T ss_pred             eEEEEEEecCceEEEecCCEEEEeeecCCCceEEEEeecCceeecccccCCHHHHHHHHHHHHHhhcc-cCceeeeEEec
Confidence            99999999999999999999999999999999999999998   999999999999999999987632 48999999999


Q ss_pred             ecCCCCCceEEEEEEeecCccccCCCHHHHHHHHHHHHHHhChhHHHhhhcC-CCCCcEEEEeCCCcHHHHHHHHHHcCC
Q 008073          465 TNLESSPKKLMIFVEIREGCTKLRDSVAILRRCCSSLEDAFGSIYKVQRDRG-EISPLSVSIVKPGTFDRLLQVAIEKGA  543 (578)
Q Consensus       465 ~~~~~~~~~y~l~vE~~~~~~~~~~~~~~l~~~~~~ld~~Ln~~Y~~~R~~g-~l~p~~v~~v~~G~f~~~~~~~~~~G~  543 (578)
                      ++.+..||||++|||+..... ...+++.+++||..||++||.+|+.+|..+ .|+|++|++|++|+|+.++++++++|+
T Consensus       488 ~d~~~~PghYvl~~El~~~~~-~~~~~~~l~~cc~~lE~~Ln~~Yr~~R~~~~sIgPLeirvv~~GtF~~l~~~~~~~G~  566 (612)
T PLN02620        488 ADTSTIPGHYVLFWELCLNGS-TPIPPSVFEDCCLTIEESLNSVYRQGRVSDKSIGPLEIKIVEPGTFDKLMDYAISLGA  566 (612)
T ss_pred             cccCCCCCceEEEEEEecCCC-CCCCHHHHHHHHHHHHHHhCHHHHHHHhcCCcCCCcEEEEeCCChHHHHHHHHHHcCC
Confidence            998778999999999841110 124667889999999999999999999987 599999999999999999999999999


Q ss_pred             CCCCCCCCcccCCHhHHHHHhccceEEEecc
Q 008073          544 PASQYKPPKIVRNREIVEFMEGCSLVTVRLD  574 (578)
Q Consensus       544 ~~~Q~K~Pr~~~~~~~~~~l~~~~~~~~~~~  574 (578)
                      +.+|||+|||+++++++++|+++|++..--.
T Consensus       567 s~~QyK~Pr~v~~~~~~~~l~~~v~~~~~s~  597 (612)
T PLN02620        567 SINQYKTPRCVKFAPIIELLNSRVVSNYFSP  597 (612)
T ss_pred             ccccccCceEecCHHHHHHHHhhhheeeccc
Confidence            9999999999999999999999999876543

>PLN02247 indole-3-acetic acid-amido synthetase	Back alignment and domain information

>PLN02249 indole-3-acetic acid-amido synthetase	Back alignment and domain information

>PF03321 GH3: GH3 auxin-responsive promoter; InterPro: IPR004993 Transcription of the gene family, GH3, has been shown to be specifically induced by the plant hormone auxin	Back alignment and domain information

>COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism]	Back alignment and domain information

>TIGR03335 F390_ftsA coenzyme F390 synthetase	Back alignment and domain information

>TIGR02155 PA_CoA_ligase phenylacetate-CoA ligase	Back alignment and domain information

>TIGR02304 aden_form_hyp probable adenylate-forming enzyme	Back alignment and domain information

>PRK00174 acetyl-CoA synthetase; Provisional	Back alignment and domain information

>TIGR02188 Ac_CoA_lig_AcsA acetate--CoA ligase	Back alignment and domain information

>PRK06060 acyl-CoA synthetase; Validated	Back alignment and domain information

>PLN02654 acetate-CoA ligase	Back alignment and domain information

>PRK06334 long chain fatty acid--[acyl-carrier-protein] ligase; Validated	Back alignment and domain information

>TIGR01734 D-ala-DACP-lig D-alanine--poly(phosphoribitol) ligase, subunit 1	Back alignment and domain information

>PRK09274 peptide synthase; Provisional	Back alignment and domain information

>PRK04319 acetyl-CoA synthetase; Provisional	Back alignment and domain information

>PLN02574 4-coumarate--CoA ligase-like	Back alignment and domain information

>PRK04813 D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional	Back alignment and domain information

>PRK07514 malonyl-CoA synthase; Validated	Back alignment and domain information

>PRK09088 acyl-CoA synthetase; Validated	Back alignment and domain information

>PRK06187 long-chain-fatty-acid--CoA ligase; Validated	Back alignment and domain information

>PRK05677 long-chain-fatty-acid--CoA ligase; Validated	Back alignment and domain information

>PRK13295 cyclohexanecarboxylate-CoA ligase; Reviewed	Back alignment and domain information

>TIGR02316 propion_prpE propionate--CoA ligase	Back alignment and domain information

>PRK06155 crotonobetaine/carnitine-CoA ligase; Provisional	Back alignment and domain information

>PRK10524 prpE propionyl-CoA synthetase; Provisional	Back alignment and domain information

>PRK07529 AMP-binding domain protein; Validated	Back alignment and domain information

>PRK07788 acyl-CoA synthetase; Validated	Back alignment and domain information

>PRK05605 long-chain-fatty-acid--CoA ligase; Validated	Back alignment and domain information

>PRK06164 acyl-CoA synthetase; Validated	Back alignment and domain information

>TIGR03205 pimA dicarboxylate--CoA ligase PimA	Back alignment and domain information

>PRK07656 long-chain-fatty-acid--CoA ligase; Validated	Back alignment and domain information

>PRK03584 acetoacetyl-CoA synthetase; Provisional	Back alignment and domain information

>PRK06145 acyl-CoA synthetase; Validated	Back alignment and domain information

>PRK08314 long-chain-fatty-acid--CoA ligase; Validated	Back alignment and domain information

>PRK08316 acyl-CoA synthetase; Validated	Back alignment and domain information

>PRK08974 long-chain-fatty-acid--CoA ligase; Validated	Back alignment and domain information

>PRK07786 long-chain-fatty-acid--CoA ligase; Validated	Back alignment and domain information

>PRK05852 acyl-CoA synthetase; Validated	Back alignment and domain information

>PRK07059 Long-chain-fatty-acid--CoA ligase; Validated	Back alignment and domain information

>PLN02330 4-coumarate--CoA ligase-like 1	Back alignment and domain information

>PRK13382 acyl-CoA synthetase; Provisional	Back alignment and domain information

>TIGR01733 AA-adenyl-dom amino acid adenylation domain	Back alignment and domain information

>PRK06839 acyl-CoA synthetase; Validated	Back alignment and domain information

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated	Back alignment and domain information

>TIGR01217 ac_ac_CoA_syn acetoacetyl-CoA synthase	Back alignment and domain information

>PRK07768 long-chain-fatty-acid--CoA ligase; Validated	Back alignment and domain information

>PRK07867 acyl-CoA synthetase; Validated	Back alignment and domain information

>COG0318 CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]	Back alignment and domain information

>PRK12406 long-chain-fatty-acid--CoA ligase; Provisional	Back alignment and domain information

>TIGR03208 cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase	Back alignment and domain information

>PLN02246 4-coumarate--CoA ligase	Back alignment and domain information

>PRK07787 acyl-CoA synthetase; Validated	Back alignment and domain information

>PRK07470 acyl-CoA synthetase; Validated	Back alignment and domain information

>PRK10252 entF enterobactin synthase subunit F; Provisional	Back alignment and domain information

>PRK12583 acyl-CoA synthetase; Provisional	Back alignment and domain information

>PLN03051 acyl-activating enzyme; Provisional	Back alignment and domain information

>PRK07769 long-chain-fatty-acid--CoA ligase; Validated	Back alignment and domain information

>COG0365 Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism]	Back alignment and domain information

>PRK07638 acyl-CoA synthetase; Validated	Back alignment and domain information

>PRK05851 long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated	Back alignment and domain information

>PRK10946 entE enterobactin synthase subunit E; Provisional	Back alignment and domain information

>PRK08751 putative long-chain fatty acyl CoA ligase; Provisional	Back alignment and domain information

>PRK05850 acyl-CoA synthetase; Validated	Back alignment and domain information

>TIGR02275 DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase	Back alignment and domain information

>PRK12492 long-chain-fatty-acid--CoA ligase; Provisional	Back alignment and domain information

>PRK08315 AMP-binding domain protein; Validated	Back alignment and domain information

>TIGR02262 benz_CoA_lig benzoate-CoA ligase family	Back alignment and domain information

>PRK12467 peptide synthase; Provisional	Back alignment and domain information

>TIGR03098 ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosortase system type 1 associated	Back alignment and domain information

>PRK13383 acyl-CoA synthetase; Provisional	Back alignment and domain information

>PRK06710 long-chain-fatty-acid--CoA ligase; Validated	Back alignment and domain information

>PLN02860 o-succinylbenzoate-CoA ligase	Back alignment and domain information

>COG1021 EntE Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism]	Back alignment and domain information

>PRK12467 peptide synthase; Provisional	Back alignment and domain information

>PRK12316 peptide synthase; Provisional	Back alignment and domain information

>PRK08279 long-chain-acyl-CoA synthetase; Validated	Back alignment and domain information

>PRK06188 acyl-CoA synthetase; Validated	Back alignment and domain information

>TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase	Back alignment and domain information

>PRK03640 O-succinylbenzoic acid--CoA ligase; Provisional	Back alignment and domain information

>PF00501 AMP-binding: AMP-binding enzyme; InterPro: IPR000873 A number of prokaryotic and eukaryotic enzymes, which appear to act via an ATP-dependent covalent binding of AMP to their substrate, share a region of sequence similarity [, , ]	Back alignment and domain information

>PRK05857 acyl-CoA synthetase; Validated	Back alignment and domain information

>PLN02736 long-chain acyl-CoA synthetase	Back alignment and domain information

>PTZ00237 acetyl-CoA synthetase; Provisional	Back alignment and domain information

>PLN02387 long-chain-fatty-acid-CoA ligase family protein	Back alignment and domain information

>TIGR01923 menE O-succinylbenzoate-CoA ligase	Back alignment and domain information

>PRK12316 peptide synthase; Provisional	Back alignment and domain information

>PRK13388 acyl-CoA synthetase; Provisional	Back alignment and domain information

>PRK08008 caiC putative crotonobetaine/carnitine-CoA ligase; Validated	Back alignment and domain information

>PLN03052 acetate--CoA ligase; Provisional	Back alignment and domain information

>PRK08043 bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated	Back alignment and domain information

>PRK05691 peptide synthase; Validated	Back alignment and domain information

>COG1022 FAA1 Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism]	Back alignment and domain information

>PRK07008 long-chain-fatty-acid--CoA ligase; Validated	Back alignment and domain information

>PRK05620 long-chain-fatty-acid--CoA ligase; Validated	Back alignment and domain information

>PRK05691 peptide synthase; Validated	Back alignment and domain information

>PTZ00342 acyl-CoA synthetase; Provisional	Back alignment and domain information

>PRK06087 short chain acyl-CoA synthetase; Reviewed	Back alignment and domain information

>PRK07824 O-succinylbenzoic acid--CoA ligase; Provisional	Back alignment and domain information

>PRK08308 acyl-CoA synthetase; Validated	Back alignment and domain information

>PRK06178 acyl-CoA synthetase; Validated	Back alignment and domain information

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional	Back alignment and domain information

>PLN03102 acyl-activating enzyme; Provisional	Back alignment and domain information

>PRK06018 putative acyl-CoA synthetase; Provisional	Back alignment and domain information

>PLN02861 long-chain-fatty-acid-CoA ligase	Back alignment and domain information

>PRK08180 feruloyl-CoA synthase; Reviewed	Back alignment and domain information

>PRK12582 acyl-CoA synthetase; Provisional	Back alignment and domain information

>PLN02430 long-chain-fatty-acid-CoA ligase	Back alignment and domain information

>PTZ00216 acyl-CoA synthetase; Provisional	Back alignment and domain information

>KOG1177 consensus Long chain fatty acid acyl-CoA ligase [Lipid transport and metabolism]	Back alignment and domain information

>PRK13390 acyl-CoA synthetase; Provisional	Back alignment and domain information

>PRK12476 putative fatty-acid--CoA ligase; Provisional	Back alignment and domain information

>PRK08276 long-chain-fatty-acid--CoA ligase; Validated	Back alignment and domain information

>PRK07798 acyl-CoA synthetase; Validated	Back alignment and domain information

>PRK13391 acyl-CoA synthetase; Provisional	Back alignment and domain information

>PRK09192 acyl-CoA synthetase; Validated	Back alignment and domain information

>PRK07868 acyl-CoA synthetase; Validated	Back alignment and domain information

>PF04443 LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR007534 LuxE is an acyl-protein synthetase found in bioluminescent bacteria	Back alignment and domain information

>TIGR02372 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactive yellow protein activation family	Back alignment and domain information

>PLN02614 long-chain acyl-CoA synthetase	Back alignment and domain information

>KOG1256 consensus Long-chain acyl-CoA synthetases (AMP-forming) [Lipid transport and metabolism]	Back alignment and domain information

>KOG1175 consensus Acyl-CoA synthetase [Lipid transport and metabolism]	Back alignment and domain information

>PRK07445 O-succinylbenzoic acid--CoA ligase; Reviewed	Back alignment and domain information

>KOG1176 consensus Acyl-CoA synthetase [Lipid transport and metabolism]	Back alignment and domain information

>KOG1179 consensus Very long-chain acyl-CoA synthetase/fatty acid transporter [Lipid transport and metabolism]	Back alignment and domain information

>KOG1180 consensus Acyl-CoA synthetase [Lipid transport and metabolism]	Back alignment and domain information

>PRK08162 acyl-CoA synthetase; Validated	Back alignment and domain information

>PRK09029 O-succinylbenzoic acid--CoA ligase; Provisional	Back alignment and domain information

>PF14535 AMP-binding_C_2: AMP-binding enzyme C-terminal domain; PDB: 2Y27_A 2Y4N_A 3QOV_B 3S89_D 3LAX_A 2Y4O_B	Back alignment and domain information

>PLN02479 acetate-CoA ligase	Back alignment and domain information

>COG1020 EntF Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]	Back alignment and domain information

>PRK09188 serine/threonine protein kinase; Provisional	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		578
4ewv_A		581	Crystal Structure Of Gh3.12 In Complex With Ampcpp		5e-81
4b2g_A		609	Crystal Structure Of An Indole-3-acetic Acid Amido		8e-81
4eq4_A		581	Crystal Structure Of Seleno-Methionine Derivatized		2e-77
4epl_A		581	Crystal Structure Of Arabidopsis Thaliana Gh3.11 (J		4e-74

>pdb|4EWV|A Chain A, Crystal Structure Of Gh3.12 In Complex With Ampcpp Length = 581

Back alignment and structure

Iteration: 1

Score = 298 bits (763), Expect = 5e-81, Method: Compositional matrix adjust. Identities = 177/580 (30%), Positives = 303/580 (52%), Gaps = 37/580 (6%) Query: 4 DEDILKKLEDSTKNATRHQLETLQSILERQSGVRYLQPYLSGCCAPIDAATYKRTVPLSC 63 +E K+L+D T N Q L+ I+ + YLQ +L D +K+ VP+ Sbjct: 14 NETFEKQLKDLTSNVKSIQDNLLEEIITPNTKTEYLQRFL---IDRFDKELFKKNVPIVS 70 Query: 64 YDDYADHINQLAGGDHGQNDQPLLAVDPLVCFFYSSGTSSMKPKLIPYFDSALSKAASQI 123 Y+D +++++ G+ +++ + F SSGTS K++P+ + L Sbjct: 71 YEDIKPYLDRVVNGESSD----VISARTITGFLLSSGTSGGAQKMMPWNNKYLDNLTF-- 124 Query: 124 AIQGSVAILRRLFPPKH----DVNKILFFIYSDNKTTTKAGF--KVMAASAFPLQGSSNE 177 + LR KH + K + F+++ ++ T +G +V +S F N Sbjct: 125 -----IYDLRMQVITKHVKGVEEGKGMMFLFTKQESMTPSGLPARVATSSYFKSDYFKNR 179 Query: 178 NLSQLIRHSSPREVIVGSNFQHQMYCHLLCGLRNYEFIDGIFSPYAIGLIGAFSFFESKW 237 + ++SP EVI+ N +YCHLLCGL + + S +A ++ A ++ W Sbjct: 180 PSNWYYSYTSPDEVILCPNNTESLYCHLLCGLVQRDEVVRTGSIFASVMVRAIEVLKNSW 239 Query: 238 EQLCDDLENGYPCLDITEVAMRDSVIEVLGGPQPDLSKRIRSICGESNWSGIFSKLWPNV 297 E+LC ++ +G+ +T++ ++SV VLGGP+P+L+ I IC +++W GI +LWPN Sbjct: 240 EELCSNIRSGHLSNWVTDLGCQNSVSLVLGGPRPELADTIEEICNQNSWKGIVKRLWPNT 299 Query: 298 RYIKCVTTGSMSQYCSKIKYYAGEVPVLGGDYFASECYVGINLDIAQPPQTTRFVMLPTA 357 +YI+ V TGSM QY + YY ++P++ Y +SE GINLD P+ + +P Sbjct: 300 KYIETVVTGSMGQYVPMLNYYCNDLPLVSTTYGSSETTFGINLDPLCKPEDVSYTFMPNM 359 Query: 358 AYFEFLPFD-MEKNEAVGEETVDFSGVEIGKMYEVVVTTYRGFYRYRLGDIVKVVDFYNS 416 +YFEF+P D +KN+ VD V++G YE VVT + G YR R+GDIV V FYN+ Sbjct: 360 SYFEFIPMDGGDKNDV-----VDLEDVKLGCTYEPVVTNFAGLYRMRVGDIVLVTGFYNN 414 Query: 417 SPQVEFVMRAP---KSSFEIISERDLMSAMESFQMMLRNVMAVEIVEFAGYTNLESSPKK 473 +PQ +FV R + +E DL A+ +++L + +++ +F Y + + P Sbjct: 415 APQFKFVRRENVVLSIDSDKTNEEDLFKAVSQAKLVLES-SGLDLKDFTSYADTSTFPGH 473 Query: 474 LMIFVEI--REGCTKLRDSVAI----LRRCCSSLEDAFGSIYKVQRDR-GEISPLSVSIV 526 ++++E+ +EG K + L CC +E++ ++YK R + G I PL + +V Sbjct: 474 YVVYLEVDTKEGEEKETAQFELDEEALSTCCLVMEESLDNVYKRCRFKDGSIGPLEIRVV 533 Query: 527 KPGTFDRLLQVAIEKGAPASQYKPPKIVRNREIVEFMEGC 566 + GTFD L+ I +GA QYK P+ +++ + ++ +E C Sbjct: 534 RQGTFDSLMDFFISQGASTGQYKTPRCIKSGKALQVLETC 573

PyMOL of 4ewv

>pdb|4B2G|A Chain A, Crystal Structure Of An Indole-3-acetic Acid Amido Synthase From Vitis Vinifera Involved In Auxin Homeostasis Length = 609

Back alignment and structure

>pdb|4EQ4|A Chain A, Crystal Structure Of Seleno-Methionine Derivatized Gh3.12 Length = 581

Back alignment and structure

>pdb|4EPL|A Chain A, Crystal Structure Of Arabidopsis Thaliana Gh3.11 (Jar1) In Complex With Ja-Ile Length = 581

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		578
4eql_A		581	4-substituted benzoates-glutamate ligase GH3.12; f	1e-104
4epl_A		581	Jasmonic acid-amido synthetase JAR1; ANL adenylati	1e-101
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-08

>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A* Length = 581	Back alignment and structure

 Score =  325 bits (832), Expect = e-104
 Identities = 165/576 (28%), Positives = 299/576 (51%), Gaps = 27/576 (4%)

Query: 3   TDEDILKKLEDSTKNATRHQLETLQSILERQSGVRYLQPYLSGCCAPIDAATYKRTVPLS 62
            +E   K+L+D T N    Q   L+ I+   +   YLQ +L       D   +K+ VP+ 
Sbjct: 13  INETFEKQLKDLTSNVKSIQDNLLEEIITPNTKTEYLQRFLID---RFDKELFKKNVPIV 69

Query: 63  CYDDYADHINQLAGGDHGQNDQPLLAVDPLVCFFYSSGTSSMKPKLIPYFDSALSKAASQ 122
            Y+D   +++++  G+       +++   +  F  SSGTS    K++P+ +  L      
Sbjct: 70  SYEDIKPYLDRVVNGE----SSDVISARTITGFLLSSGTSGGAQKMMPWNNKYLDNLTFI 125

Query: 123 IAIQGSVAILRRLFPPKHDVNKILFFIYSDNKTTTKAGFKVMAASAFPLQGSSNENL--S 180
             ++  + ++ +      +   ++F  ++  ++ T +G     A++   +    +N   +
Sbjct: 126 YDLR--MQVITKHVKGVEEGKGMMFL-FTKQESMTPSGLPARVATSSYFKSDYFKNRPSN 182

Query: 181 QLIRHSSPREVIVGSNFQHQMYCHLLCGLRNYEFIDGIFSPYAIGLIGAFSFFESKWEQL 240
               ++SP EVI+  N    +YCHLLCGL   + +    S +A  ++ A    ++ WE+L
Sbjct: 183 WYYSYTSPDEVILCPNNTESLYCHLLCGLVQRDEVVRTGSIFASVMVRAIEVLKNSWEEL 242

Query: 241 CDDLENGYPCLDITEVAMRDSVIEVLGGPQPDLSKRIRSICGESNWSGIFSKLWPNVRYI 300
           C ++ +G+    +T++  ++SV  VLGGP+P+L+  I  IC +++W GI  +LWPN +YI
Sbjct: 243 CSNIRSGHLSNWVTDLGCQNSVSLVLGGPRPELADTIEEICNQNSWKGIVKRLWPNTKYI 302

Query: 301 KCVTTGSMSQYCSKIKYYAGEVPVLGGDYFASECYVGINLDIAQPPQTTRFVMLPTAAYF 360
           + V TGSM QY   + YY  ++P++   Y +SE   GINLD    P+   +  +P  +YF
Sbjct: 303 ETVVTGSMGQYVPMLNYYCNDLPLVSTTYGSSETTFGINLDPLCKPEDVSYTFMPNMSYF 362

Query: 361 EFLPFDMEKNEAVGEETVDFSGVEIGKMYEVVVTTYRGFYRYRLGDIVKVVDFYNSSPQV 420
           EF+P D         + VD   V++G  YE VVT + G YR R+GDIV V  FYN++PQ 
Sbjct: 363 EFIPMDGGDK----NDVVDLEDVKLGCTYEPVVTNFAGLYRMRVGDIVLVTGFYNNAPQF 418

Query: 421 EFVMRAPKSS---FEIISERDLMSAMESFQMMLRNVMAVEIVEFAGYTNLESSPKKLMIF 477
           +FV R         +  +E DL  A+   +++L +   +++ +F  Y +  + P   +++
Sbjct: 419 KFVRRENVVLSIDSDKTNEEDLFKAVSQAKLVLES-SGLDLKDFTSYADTSTFPGHYVVY 477

Query: 478 VEIREGCTKLRDSVAI------LRRCCSSLEDAFGSIYKVQRDR-GEISPLSVSIVKPGT 530
           +E+     + +++         L  CC  +E++  ++YK  R + G I PL + +V+ GT
Sbjct: 478 LEVDTKEGEEKETAQFELDEEALSTCCLVMEESLDNVYKRCRFKDGSIGPLEIRVVRQGT 537

Query: 531 FDRLLQVAIEKGAPASQYKPPKIVRNREIVEFMEGC 566
           FD L+   I +GA   QYK P+ +++ + ++ +E C
Sbjct: 538 FDSLMDFFISQGASTGQYKTPRCIKSGKALQVLETC 573

PyMOL of 4eql

>4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana} Length = 581	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		578
4epl_A		581	Jasmonic acid-amido synthetase JAR1; ANL adenylati	100.0
4eql_A		581	4-substituted benzoates-glutamate ligase GH3.12; f	100.0
4b2g_A		609	GH3-1 auxin conjugating enzyme; signaling protein,	100.0
3qov_A		436	Phenylacetate-coenzyme A ligase; acetyl-COA synthe	99.84
2y27_A		437	Phenylacetate-coenzyme A ligase; phenylacetic acid	99.83
2y4o_A		443	Phenylacetate-coenzyme A ligase; phenylacetic acid	99.83
3hgu_A		369	EHPF; phenazine, antibiotic, biosynthetic protein;	99.45
3etc_A		580	AMP-binding protein; adenylate-forming acyl-COA sy	99.26
3e7w_A		511	D-alanine--poly(phosphoribitol) ligase subunit 1;	99.19
4fuq_A		503	Malonyl COA synthetase; ANL superfamily, methylma	99.17
1pg4_A		652	Acetyl-COA synthetase; AMP-forming, adenylate-form	99.15
3fce_A		512	D-alanine--poly(phosphoribitol) ligase subunit 1;	99.15
3kxw_A		590	Saframycin MX1 synthetase B; fatty acid AMP ligase	99.14
3l8c_A		521	D-alanine--poly(phosphoribitol) ligase subunit 1;	99.13
3ni2_A		536	4-coumarate:COA ligase; 4CL, phenylpropanoid biosy	99.11
3ivr_A		509	Putative long-chain-fatty-acid COA ligase; structu	99.11
1t5h_X		504	4-chlorobenzoyl COA ligase; adenylate-forming coen	99.1
3nyq_A		505	Malonyl-COA ligase; A/B topology ababa sandwich be	99.1
2d1s_A		548	Luciferase, luciferin 4-monooxygenase; alpha/beta,	99.1
1ry2_A		663	Acetyl-coenzyme A synthetase 1, acyl-activating en	99.05
3rix_A		550	Luciferase, luciferin 4-monooxygenase; oxidoreduct	99.03
3c5e_A		570	Acyl-coenzyme A synthetase ACSM2A, mitochondrial;	99.03
1mdb_A		539	2,3-dihydroxybenzoate-AMP ligase; adenylation doma	99.02
3g7s_A		549	Long-chain-fatty-acid--COA ligase (FADD-1); protei	98.99
3gqw_A		576	Fatty acid AMP ligase; FAAL, E. coli, ATP-dependen	98.97
3rg2_A		617	Enterobactin synthase component E (ENTE), 2,3-DIH	98.96
3o83_A		544	Peptide arylation enzyme; ligase, adenylation of 2	98.94
3r44_A		517	Fatty acyl COA synthetase FADD13 (fatty-acyl-COA s	98.94
3ite_A		562	SIDN siderophore synthetase; ligase, non-ribosomal	98.92
3ipl_A		501	2-succinylbenzoate--COA ligase; structural genomic	98.89
1amu_A		563	GRSA, gramicidin synthetase 1; peptide synthetase,	98.88
3tsy_A		979	Fusion protein 4-coumarate--COA ligase 1, resvera	98.84
4gr5_A		570	Non-ribosomal peptide synthetase; MBTH-like domain	98.82
4gs5_A		358	Acyl-COA synthetase (AMP-forming)/AMP-acid ligase	98.79
4dg8_A		620	PA1221; ANL superfamily, adenylation domain, pepti	98.68
2v7b_A		529	Benzoate-coenzyme A ligase; benzoate oxidation, be	98.66
2vsq_A		1304	Surfactin synthetase subunit 3; ligase, peptidyl c	98.61
1v25_A		541	Long-chain-fatty-acid-COA synthetase; ligase, stru	98.57
3t5a_A		480	Long-chain-fatty-acid--AMP ligase FADD28; acetyl-C	97.89
3lax_A		109	Phenylacetate-coenzyme A ligase; structural genomi	95.71
3gxs_A		109	Phenylacetate-coenzyme A ligase; APC62324.1, struc	95.45

>4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana}	Back alignment and structure

Probab=100.00  E-value=1.8e-125  Score=1044.41  Aligned_cols=550  Identities=32%  Similarity=0.583  Sum_probs=499.9

Q ss_pred             ChHHHHHHHHHHHHhHHHHHHHHHHHHHHhccCChhhhhh-hcCCCCCCChh-hHhhcCCCCchhhhHHHHHHHhCCCCC
Q 008073            3 TDEDILKKLEDSTKNATRHQLETLQSILERQSGVRYLQPY-LSGCCAPIDAA-TYKRTVPLSCYDDYADHINQLAGGDHG   80 (578)
Q Consensus         3 ~~~~~~~~~e~~~~~~~~~Q~~~L~~iL~~~~~T~ygr~~-f~~i~~~~s~~-df~~~vPl~~Yed~~pyieR~~~Ge~~   80 (578)
                      .+++.+++||+.++||.++|+++|++||++|++|+|||+| |++|.  ++++ ||+++|||++|||++||||||++||. 
T Consensus        15 ~~~~~~~~~e~~~~~~~~vQ~~vL~~iL~~n~~Teygk~~gf~~i~--~~~e~dF~~~VPi~~Yedl~pyIeRi~~Ge~-   91 (581)
T 4epl_A           15 DMNRVIDEFDEMTRNAHQVQKQTLKEILLKNQSAIYLQNCGLNGNA--TDPEEAFKSMVPLVTDVELEPYIKRMVDGDT-   91 (581)
T ss_dssp             CHHHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCHHHHTTTCC------CHHHHHHHHSCCBCHHHHHHHHHHHHTTCC-
T ss_pred             ccHHHHHHHHHHHcCHHHHHHHHHHHHHHHhccCHHHHhcCCCccc--CCHHHHHHHhCCCccHHHHHHHHHHHHCCCC-
Confidence            5778899999999999999999999999999999999999 99872  6789 99999999999999999999999995 


Q ss_pred             CCCCCcccCCCeeEEEecccCCCCcceeeecchhHHHHHHHHHHHHHHHHHHHhcCCCCCC-CCceEEEEeccCccccCC
Q 008073           81 QNDQPLLAVDPLVCFFYSSGTSSMKPKLIPYFDSALSKAASQIAIQGSVAILRRLFPPKHD-VNKILFFIYSDNKTTTKA  159 (578)
Q Consensus        81 ~~~~~vl~~~pi~~F~~TSGTT~G~~K~IP~T~~~l~~~~~~~~~~~~~~~~~~~~~p~~~-~gk~l~~~~~~~~~~t~~  159 (578)
                         ++|||++||.+|++|||||+|++|+||+|+++++.++.  ++.++..+++++  |++. .||.|+|++++++.+|++
T Consensus        92 ---~~iL~~~pi~~f~~SSGTT~gk~K~IP~T~~~l~~~~~--~~~~~~~~~~~~--p~l~~~Gk~L~l~~~s~~~~t~~  164 (581)
T 4epl_A           92 ---SPILTGHPVPAISLSSGTSQGRPKFIPFTDELMENTLQ--LFRTAFAFRNRD--FPIDDNGKALQFIFSSKQYISTG  164 (581)
T ss_dssp             ---SSSSSSSCCSEEEEEEEEETTEEEEEEECHHHHHHHHH--HHHHHHHHHHHH--SCCCTTCEEEEECCCCCCEECTT
T ss_pred             ---CCccCCCCcceEEecCCCCCCCccccccCHHHHHHHHH--HHHHHHHHHhhC--CccccCCcEEEEeecCCcccCCC
Confidence               59999999999999999999999999999999998644  555666677776  8888 899999888999999999


Q ss_pred             CcEEeecccccccCCCc-ccc--cccccccCCchhhcCCChhHHHHHHHHhccccCCccceeeccchhhHHHHHHHHHHH
Q 008073          160 GFKVMAASAFPLQGSSN-ENL--SQLIRHSSPREVIVGSNFQHQMYCHLLCGLRNYEFIDGIFSPYAIGLIGAFSFFESK  236 (578)
Q Consensus       160 Gip~G~~S~~~~~~~~~-~~~--~~~~~~~~P~~~~~~~d~~~~~Y~~Ll~aL~~~~~l~~i~~~f~~~ll~~~~~l~~~  236 (578)
                      |+|+|++|++.++ +.. ++.  +....+++|.+++.++|+.+++||||||||.++++|..|+++|+++|+.+++.|+++
T Consensus       165 Gi~~G~~S~~~~~-s~~f~~~p~~~~~~~t~P~e~i~~~D~~~~~Y~~Ll~~L~~~~~v~~i~a~fas~ll~~~~~l~~~  243 (581)
T 4epl_A          165 GVPVGTATTNVYR-NPNFKAGMKSITSPSCSPDEVIFSPDVHQALYCHLLSGILFRDQVQYVFAVFAHGLVHAFRTFEQV  243 (581)
T ss_dssp             SCEEECHHHHHHT-STTHHHHHGGGSCCBSSCHHHHTCSCHHHHHHHHHHHHHHTGGGEEEEEEEEHHHHHHHHHHHHHH
T ss_pred             Cceeeechhhhhh-cchhhcCchhhhhcccCCHHHhcCCCHHHHHHHHHHHhhhccccccEEeeccHHHHHHHHHHHHHH
Confidence            9999999999997 543 232  345678999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCCCCCChhHHHHHHHHHhCCCCHHHHHHHHHHhcCC-CccCcccccCCCCceeEEEecCchHHHHHHH
Q 008073          237 WEQLCDDLENGYPCLDITEVAMRDSVIEVLGGPQPDLSKRIRSICGES-NWSGIFSKLWPNVRYIKCVTTGSMSQYCSKI  315 (578)
Q Consensus       237 w~~l~~dI~~gti~~~i~~~~iR~~l~~~lg~p~p~rA~~L~~~~~~~-~~~g~~~~lWP~L~~i~~~~~G~~~~y~~~l  315 (578)
                      |+++|+||++|+++++++++.+|+++++++ .|+|++|++|+++|++. +|.|++++|||||++|+||++|+|++|+++|
T Consensus       244 We~l~~dI~~gtl~~~it~~~~R~~l~~v~-~p~~~~a~~l~~~~~~~~~~~g~i~~lWPnl~~i~~~~~G~~~~Y~~~l  322 (581)
T 4epl_A          244 WEEIVTDIKDGVLSNRITVPSVRTAMSKLL-TPNPELAETIRTKCMSLSNWYGLIPALFPNAKYVYGIMTGSMEPYVPKL  322 (581)
T ss_dssp             HHHHHHHHHHTCCCTTCCCHHHHHHHHTTC-CCCHHHHHHHHHHHHHSSTTTTHHHHHCTTCCCEEEECSGGGGGGHHHH
T ss_pred             HHHHHHHHHhcCCCcCCCCHHHHHHHhCCC-CCCHHHHHHHHHHhCCCCccccCHHHhCCCCceEEEEeCCChHHHHHHH
Confidence            999999999999999999999999999999 79999999999999985 6999999999999999999999999999999


Q ss_pred             HHHhCCCCccccccccCceeeeeecCCCCCCCCcceeccCCceEEEEeeCCCCCccccCCceeeccccCCCceEEEEEcc
Q 008073          316 KYYAGEVPVLGGDYFASECYVGINLDIAQPPQTTRFVMLPTAAYFEFLPFDMEKNEAVGEETVDFSGVEIGKMYEVVVTT  395 (578)
Q Consensus       316 ~~~~g~v~~~~~~y~asEg~~~i~~~~~~~~~~~~~~l~~~~~f~EFip~~~~~~~~~~~~~l~~~ele~G~~YelVvTt  395 (578)
                      ++++|++|+++.+|+||||++|+|+++.|+++...|+++|+.+||||||.++.  +.+++++++++|||+|++|||||||
T Consensus       323 ~~~~g~~p~~~~~Y~ASEg~~gi~~~p~~~~~~~~~~L~p~~~ffEFiP~~~~--~~~~~~~v~l~eve~G~~YelviTt  400 (581)
T 4epl_A          323 RHYAGDLPLVSHDYGSSEGWIAANVTPRLSPEEATFAVIPNLGYFEFLPVSET--GEGEEKPVGLTQVKIGEEYEVVITN  400 (581)
T ss_dssp             HHHHTTSCEEECCEEETTEEEEECCCTTSCTTTCCEEECTTSCEEEEEEC---------CCCEEGGGCCTTCEEEEEEES
T ss_pred             HHHcCCCccccCceeccceeeeeecCCCCCccccceeecCCcEEEEEEecccc--cCCCCceeeHHHcCCCCeEEEEEee
Confidence            99998999999999999999999999999987789999999999999998865  4456889999999999999999999


Q ss_pred             CCceeccccCCEEEEeeeeCCCCEEEEEeeCCC---ccccccCHHHHHHHHHHHHHHhccccCceeEEEEEeecCCCCCc
Q 008073          396 YRGFYRYRLGDIVKVVDFYNSSPQVEFVMRAPK---SSFEIISERDLMSAMESFQMMLRNVMAVEIVEFAGYTNLESSPK  472 (578)
Q Consensus       396 ~~GLyRYr~GDvV~v~g~~~~~P~i~f~gR~~~---l~gEkv~e~~v~~av~~~~~~l~~~~g~~l~~f~~~~~~~~~~~  472 (578)
                      .+||||||+||+|+|+||+|++|+|+|+||.++   +.|||++|++|++||.+|++.|.+ +|+.|.+||+.++.++.||
T Consensus       401 ~~GL~RYr~GD~v~v~g~~~~~p~~~~~gR~~~~l~~~Ge~~~~~~v~~al~~a~~~l~~-~~~~l~eft~~~d~~~~p~  479 (581)
T 4epl_A          401 YAGLYRYRLGDVVKVIGFYNNTPQLKFICRRNLILSINIDKNTERDLQLSVESAAKRLSE-EKIEVIDFSSYIDVSTDPG  479 (581)
T ss_dssp             TTSCSSEEEEEEEEEEEEETTEEEEEEEEETTCCBCSSSCCBCHHHHHHHHHHHHHHHHT-TTCCEEEEEEEEECSSSSC
T ss_pred             ccceeeEEcCCEEEEecccCCCcEEEEEeecCCeEEeeeeECCHHHHHHHHHHHHHhhcc-cCCeEEEEEEecCCCCCCC
Confidence            999999999999999999999999999999998   999999999999999999987743 7999999999998777799


Q ss_pred             eEEEEEEeecCccccCCCHHHHHHHHHHHHHHh-ChhHHHhhhcCCCCCcEEEEeCCCcHHHHHHHHHHcCCCCCCCCCC
Q 008073          473 KLMIFVEIREGCTKLRDSVAILRRCCSSLEDAF-GSIYKVQRDRGEISPLSVSIVKPGTFDRLLQVAIEKGAPASQYKPP  551 (578)
Q Consensus       473 ~y~l~vE~~~~~~~~~~~~~~l~~~~~~ld~~L-n~~Y~~~R~~g~l~p~~v~~v~~G~f~~~~~~~~~~G~~~~Q~K~P  551 (578)
                      ||++|||+.+.     ++.+.+++||..||++| |++|+.+|..|+|+|++|++|++|+|.+|+++++++|++++|+|+|
T Consensus       480 hyv~~wE~~~~-----~~~~~l~~~~~~Ld~~L~n~~Y~~~R~~~~L~pl~v~~v~~G~F~~l~~~~~~~G~~~~Q~K~P  554 (581)
T 4epl_A          480 HYAIFWEISGE-----TNEDVLQDCCNCLDRAFIDAGYVSSRKCKTIGALELRVVAKGTFRKIQEHFLGLGSSAGQFKMP  554 (581)
T ss_dssp             EEEEEEEESSC-----CCHHHHHHHHHHHHHHCCCHHHHHHHHHTSSCCCEEEEECTTHHHHHHHHHHTTC------CCC
T ss_pred             cEEEEEeecCC-----CCHHHHHHHHHHHHHHhCChhHHHHHhcCCCCCcEEEEeCcchHHHHHHHHHhCCCCCCCcCCC
Confidence            99999999642     45678999999999999 9999999999999999999999999999999999999999999999


Q ss_pred             ccc--CCHhHHHHHhccceEEEe
Q 008073          552 KIV--RNREIVEFMEGCSLVTVR  572 (578)
Q Consensus       552 r~~--~~~~~~~~l~~~~~~~~~  572 (578)
                      ||+  ++++++++|+++|++.-.
T Consensus       555 R~~~~~~~~~~~~L~~~v~~~~~  577 (581)
T 4epl_A          555 RCVKPSNAKVLQILCENVVSSYF  577 (581)
T ss_dssp             SSCCTTCHHHHHHHHTTEEEEEE
T ss_pred             eeecCCCHHHHHHHHhccccccc
Confidence            999  999999999999998654

PyMOL of 4epl

>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A*	Back alignment and structure

>4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera}	Back alignment and structure

>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*	Back alignment and structure

>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*	Back alignment and structure

>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}	Back alignment and structure

>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*	Back alignment and structure

>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}	Back alignment and structure

>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*	Back alignment and structure

>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*	Back alignment and structure

>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*	Back alignment and structure

>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*	Back alignment and structure

>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*	Back alignment and structure

>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*	Back alignment and structure

>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*	Back alignment and structure

>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0	Back alignment and structure

>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*	Back alignment and structure

>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*	Back alignment and structure

>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*	Back alignment and structure

>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1	Back alignment and structure

>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A	Back alignment and structure

>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*	Back alignment and structure

>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A	Back alignment and structure

>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}	Back alignment and structure

>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}	Back alignment and structure

>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*	Back alignment and structure

>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A	Back alignment and structure

>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}	Back alignment and structure

>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}	Back alignment and structure

>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1	Back alignment and structure

>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}	Back alignment and structure

>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A	Back alignment and structure

>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}	Back alignment and structure

>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*	Back alignment and structure

>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}	Back alignment and structure

>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}	Back alignment and structure

>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*	Back alignment and structure

>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A	Back alignment and structure

>3lax_A Phenylacetate-coenzyme A ligase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.43A {Bacteroides vulgatus}	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		578
d1pg4a_		643	Acetyl-CoA synthetase {Salmonella enterica [TaxId:	99.17
d1lcia_		541	Luciferase {Firefly (Photinus pyralis) [TaxId: 705	98.88
d1ry2a_		640	Acetyl-CoA synthetase {Baker's yeast (Saccharomyce	98.68
d1mdba_		536	Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtil	98.22
d1amua_		514	Phenylalanine activating domain of gramicidin synt	98.2
d3cw9a1		503	4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId	98.16
d1v25a_		534	Long chain fatty acid-CoA ligase TT0168 {Thermus t	98.04

>d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]}	Back information, alignment and structure

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Salmonella enterica [TaxId: 28901]

Probab=99.17  E-value=1.4e-09  Score=120.12  Aligned_cols=223  Identities=16%  Similarity=0.123  Sum_probs=119.2

Q ss_pred             CCCCceeEEEecCch---HHHHHHHHHHhC--CCCccccccccCcee-eee-ecCCCCC--CCCcceeccCCceEEEEee
Q 008073          294 WPNVRYIKCVTTGSM---SQYCSKIKYYAG--EVPVLGGDYFASECY-VGI-NLDIAQP--PQTTRFVMLPTAAYFEFLP  364 (578)
Q Consensus       294 WP~L~~i~~~~~G~~---~~y~~~l~~~~g--~v~~~~~~y~asEg~-~~i-~~~~~~~--~~~~~~~l~~~~~f~EFip  364 (578)
                      .+.|+++   .+|+.   ....+.+.+.+|  +++++ ++||.||+. +.+ +.....+  ++..+. ..++ .-+..++
T Consensus       373 l~sLr~i---~~~G~pl~~~~~~~~~~~~g~~~~~i~-~~yG~TE~g~~~~~~~~~~~~~~~gs~G~-p~~g-~~v~ivd  446 (643)
T d1pg4a_         373 RSSLRIL---GSVGEPINPEAWEWYWKKIGKEKCPVV-DTWWQTETGGFMITPLPGAIELKAGSATR-PFFG-VQPALVD  446 (643)
T ss_dssp             CTTCCEE---EEESSCCCHHHHHHHHHHTTTTCSCEE-EEBCCGGGSSCSBCCCTTTCCBCTTCCBS-BCTT-CCEEEEC
T ss_pred             CCceEEE---EEEeCCCCHHHHHHHHHHhCCCCceEE-EeechhhccceEEecCCCccCCCCCcccc-ccCC-CEEEEEC
Confidence            4667744   44332   444456666664  48899 999999963 222 1111111  111111 2233 2345565


Q ss_pred             CCCCCccccCCceeeccccCCCceEEEEEccC-----Ccee----------------ccccCCEEEEeeeeCCCCEEEEE
Q 008073          365 FDMEKNEAVGEETVDFSGVEIGKMYEVVVTTY-----RGFY----------------RYRLGDIVKVVDFYNSSPQVEFV  423 (578)
Q Consensus       365 ~~~~~~~~~~~~~l~~~ele~G~~YelVvTt~-----~GLy----------------RYr~GDvV~v~g~~~~~P~i~f~  423 (578)
                      .+.             .+++.|+.+||+|+..     .|+|                -|+|||++++..    .-.+.|+
T Consensus       447 ~~g-------------~~~~~g~~Gel~v~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~TGDl~~~d~----dG~l~i~  509 (643)
T d1pg4a_         447 NEG-------------HPQEGATEGNLVITDSWPGQARTLFGDHERFEQTYFSTFKNMYFSGDGARRDE----DGYYWIT  509 (643)
T ss_dssp             TTC-------------CBCCSSEEEEEEECSCCTTCCCEETTCHHHHHHHHHSSSTTSEEEEEEEEECT----TSCEEEE
T ss_pred             CCC-------------CCCCCCceEEEEEecCCCcccccccCChhhchhhhcccCCCeEEcCCEEEECC----CceEEEe
Confidence            432             3467899999999863     2333                288999999853    3479999


Q ss_pred             eeCCC---ccccccCHHHHHHHHHHHHHHhccccCceeEEEEEe--ecCCCCCceEEEEEEeecCccccCCCHHHHHHHH
Q 008073          424 MRAPK---SSFEIISERDLMSAMESFQMMLRNVMAVEIVEFAGY--TNLESSPKKLMIFVEIREGCTKLRDSVAILRRCC  498 (578)
Q Consensus       424 gR~~~---l~gEkv~e~~v~~av~~~~~~l~~~~g~~l~~f~~~--~~~~~~~~~y~l~vE~~~~~~~~~~~~~~l~~~~  498 (578)
                      ||.++   +.|++++..+|+++|.+.       .+  +.+-+|+  .+.. .....+.||.+..+   ...+.+..+++.
T Consensus       510 GR~dd~ik~~G~ri~p~eIE~~l~~~-------p~--V~eaaVvg~~d~~-~ge~~~a~Vv~~~~---~~~~~~~~~~i~  576 (643)
T d1pg4a_         510 GRVDDVLNVSGHRLGTAEIESALVAH-------PK--IAEAAVVGIPHAI-KGQAIYAYVTLNHG---EEPSPELYAEVR  576 (643)
T ss_dssp             EESSSEEEETTEEEEHHHHHHHHHHS-------TT--EEEEEEEEEEETT-TEEEEEEEEEECTT---CCCCHHHHHHHH
T ss_pred             cccccEEEECCEEECHHHHHHHHHhC-------CC--cceEEEEEEECCC-CCeEEEEEEEECCC---CCCCHHHHHHHH
Confidence            99998   789999999999988753       22  3344332  2221 11244578877643   223433333444


Q ss_pred             HHHHHHhChhHHHhhhcCCCCCcEEEEeCC------CcHHH--HHHHHHHcCCCCCCCCCCcccCCHhHHHHHh
Q 008073          499 SSLEDAFGSIYKVQRDRGEISPLSVSIVKP------GTFDR--LLQVAIEKGAPASQYKPPKIVRNREIVEFME  564 (578)
Q Consensus       499 ~~ld~~Ln~~Y~~~R~~g~l~p~~v~~v~~------G~f~~--~~~~~~~~G~~~~Q~K~Pr~~~~~~~~~~l~  564 (578)
                      +.+.+.|.+         .-.|-.|.+|+.      |=..+  +++  +..|. ..+.+-+--+.|++.++.+.
T Consensus       577 ~~~~~~L~~---------~~vP~~i~~v~~lP~T~sGKi~R~~Lr~--~~~~~-~~~~~~~~t~~~p~~l~~~~  638 (643)
T d1pg4a_         577 NWVRKEIGP---------LATPDVLHWTDSLPKTRSGKIMRRILRK--IAAGD-TSNLGDTSTLADPGVVEKLL  638 (643)
T ss_dssp             HHHHHHTCG---------GGCCSEEEECSCCCBCTTSCBCHHHHHH--HHHTC-----------CCTTHHHHHH
T ss_pred             HHHHhhCCc---------ccCccEEEEECCCCCCCCcCccHHHHHH--HhcCC-ccccCCccccCChHHHHHHH
Confidence            444444421         235667777652      32111  222  22332 22344455577888776654

PyMOL of d1pg4a_

>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]}	Back information, alignment and structure

>d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]}	Back information, alignment and structure

>d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]}	Back information, alignment and structure

>d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]}	Back information, alignment and structure

>d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure