Citrus Sinensis ID: 008082

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------58
Protein Sequence
MNKTPKGSPKVVERKSPRSPALEKQRPSRVSELESQLAQLQEDLKKAKEQLNASDSWKRRAQQEAEEAKKQLSAMSARLEESQQQLLEITTSEDTRVEELRQLSQDRDKAWQSELDAVQKQQSMDSAALGSAMNEIQRLKFQLEKVAESEAAQTKHAESAYAEMQNLRIELTETLSLVEKLKNELSYCKESESQALEDVRKSQMQLETANANLEMLRSDGIKATEAYNTLSLELELSKARVKSLEELVSKLQNDLLNSSNKLAESMGDVHLSQKNGENEEIDKLKGELDLARNELRQLRSALDASETRYQEEYIQSTLQIRSAYEQLERAKSESSQREADLETELKNVKAQIEELRANLLDKETELQSISEENEGLNLKIKTNESNQRDSKLAVELNKLEAEVVEFKASILDKETELMSLTEQNGMLKMEIENREMERNKVNDEAISLAEAARVAEREALMKVGFLTEEADKSSRRAARVTEQLDAAQAASTEMEAELRKLKVQSDQWRKAAEAATAMLSAGNNGKFVERTGSLDGQYSPMIGNTGSPYCEELDDDSPKKKNANMLKKFGVLWKKGQK
Secondary Structure (PSIPRED)
cccccccccHHHHcccccccHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHcccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
cccccccccccEEccccccccHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEccccccccccccccccccccccccccccccccccHHHHHHHHHccccc
Coil and Loop (DISEMBL)
mnktpkgspkvverksprspalekqrpsRVSELESQLAQLQEDLKKAKEQLNASDSWKRRAQQEAEEAKKQLSAMSARLEESQQQLLEITTSEDTRVEELRQLSQDRDKAWQSELDAVQKQQSMDSAALGSAMNEIQRLKFQLEKVAESEAAQTKHAESAYAEMQNLRIELTETLSLVEKLKNELSYCKESESQALEDVRKSQMQLETANANLEMLRSDGIKATEAYNTLSLELELSKARVKSLEELVSKLQNDLLNSSNKLAEsmgdvhlsqkngeneeiDKLKGELDLARNELRQLRSALDASETRYQEEYIQSTLQIRSAYEQLERAKSESSQREADLETELKNVKAQIEELRANLLDKETELQSISeeneglnlkiktnesnqrdSKLAVELNKLEAEVVEFKASILDKETELMSLTEQNGMLKMEIENREMERNKVNDEAISLAEAARVAEREALMKVGFLTEEADKSSRRAARVTEQLDAAQAASTEMEAELRKLKVQSDQWRKAAEAATAMLSagnngkfvertgsldgqyspmigntgspyceeldddspkkkNANMLKKFGVLWKKGQK
Flexible Loop (DISEMBL)
mnktpkgspkvverksprspalekqrpsrvSELESQLAQLQEDLKKAKEQLNASDSWKRRAQQEAEEAKKQLSAMSARLEESQQQLLeittsedtrVEELRQLSQDRDKAWQSELDAVQKQQSMDSAALGSAMNEIQRLKFQLEKVAESEAAQTKHAESAYAEMQNLRIELTETLSLVEKLKNELSYCKESESQALEDVRKSQMQLETANANLEMLRSDGIKATEAYNTLSLELELSKARVKSLEELVSKLQNDLLNSSNKLAESMGdvhlsqkngeneeiDKLKGELDLARNELRQLRSaldasetryQEEYIQSTLQIRSAYEQLERAksessqreadLETELKNVKAQIEELRANLldketelqsiseeneglnlkiktnesnqrdsKLAVELNKLEAEVVEFKASILDKETELMSLTEQNGMLKMEIENREMERNKVNDEAISLAEAARVAEREALMKVGFlteeadkssrraARVTEQLDAAQAASTEMEAELRKLKVQSDQWRKAAEAATAmlsagnngkFVERTGSLDGQYSPMIGNTGSPYCEELDDDSPKKKNANMLKKFGVLWKKGQK
Low Complexity Region (SEG)
MNKTPKGSPKVVERKSPRSPALEKQRPSRVSELESQLAQLQEDLKKAKEQLNASDSWKRRAQQEAEEAKKQLSAMSARLEESQQQLLEITTSEDTRVEELRQLSQDRDKAWQSELDAVQKQQSMDSAALGSAMNEIQRLKFQLEKVAESEAAQTKHAESAYAEMQNLRIELTETLSLVEKLKNELSYCKESESQALEDVRKSQMQLETANANLEMLRSDGIKATEAYNTLSLELELSKARVKSLEELVSKLQNDLLNSSNKLAESMGDVHLSQKNGENEEIDKLKGELDLARNELRQLRSALDASETRYQEEYIQSTLQIRSAYEQLERAKSESSQREADLETELKNVKAQIEELRANLLDKETELQSISEENEGLNLKIKTNESNQRDSKLAVELNKLEAEVVEFKASILDKETELMSLTEQNGMLKMEIENREMERNKVNDEAISLaeaarvaereaLMKVGFLTEEADKSSRRAARVTEQLDAAQAASTEMEAELRKLKVQSDQWRKAAEAATAMLSAGNNGKFVERTGSLDGQYSPMIGNTGSPYCEELDDDSPKKKNANMLKKFGVLWKKGQK
Disordered region (IsUnstruct)
**********************************************************************************************************************************************************************LRIELTETLSLVEKL********************************************AYNTLSL**********************************************************************************************************************************************************************LEAEVVEFKASIL*************************************************************************************************************************************************************FGVLW*****
Disordered Region (DISOPRED)
*******************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************LWKK***
Disordered Region (DISEMBL)
***********************************QLAQLQEDL**************************************QQQLLEITTSEDTRVEELRQLSQDRDKAWQSELDAVQKQQSMDSAALGSAMNEIQRLKFQLEK*************SAYAEMQNLRIELTETLSLVEKLKNELSYCKESESQALEDVRKSQMQLETANANLEMLRSDGIKATEAYNTLSLELELSKARVKSLEELVSKLQNDLLNSSNKLAESMGDVHLSQKNGENEEIDKLKGELDLARNELRQLRSALDASETRYQEEYIQSTLQIRSAYEQ*****************ELKNVKAQIEELRANLLDKETELQSISEENEGLNLKIKTNESNQRDSKLAVELNKLEAEVVEFKASILDKETELMSLTEQNGMLKMEIENREMERNKVNDEAISLAEAARVAEREALMKVGFLTE**************************EAELRKLKVQSDQWRKAAEAATAMLSAGNNGKFVERTGSLDGQYSPMIGNTGSPYCEELDDDSPKKKNANMLKKFGVLWKKGQK
Disordered Region (DISPRO)
***************************SRVSELESQLAQLQEDLKKAKEQLNASDSWKRRAQQEAEEAKKQLSAMSARLEESQQQLLEITTSEDTRVEELRQLSQDRDKAWQSELDAVQKQQSMDSAALGSAMNEIQRLKFQLEKVAESEAAQTKHAESAYAEMQNLRIELTETLSLVEKLKNELSYCKESESQALEDVRKSQMQLETANANLEMLRSDGIKATEAYNTLSLELELSKARVKSLEELVSKLQNDLLNSSNKLAESMGDVHLSQKNGENEEIDKLKGELDLARNELRQLRSALDASETRYQEEYIQSTLQIRSAYEQLERAKSESSQREADLETELKNVKAQIEELRANLLDKETELQSISEENEGLNLKIKTNESNQRDSKLAVELNKLEAEVVEFKASILDKETELMSLTEQNGMLKMEIENREMERNKVNDEAISLAEAARVAEREALMKVGFLTEEADKSSRRAARVTEQLDAAQAASTEMEAELRKLKVQSDQWRKAAEAATAMLSAGNNGKFVERTGSLDGQYSPMIGNTGSP****LDDDSP*****N*LKKF**LWK****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MNKTPKGSPKVVERKSPRSPALEKQRPSRxxxxxxxxxxxxxxxxxxxxxLNASDSWxxxxxxxxxxxxxxxxxxxxxxxxxxxxLLEITTSEDTRVEELRQLSQDRDKAWQSELDAVQKQQSMDSAALGSAMNEIQRLKFQLEKVAESEAAQTKHAESAYAExxxxxxxxxxxxxxxxxxxxxLSYCKESESQALEDxxxxxxxxxxxxxxxxxxxxxGIKATEAxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxLAESMGDVHLSQxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxYQEEYIQSTLQIRSAxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxQRDSKLAVExxxxxxxxxxxxxxxxxxxxxLMSLTEQNGMLKMEIENREMERNKVNDEAISLAEAARVAEREALMKVGFLTEExxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxAEAATAMLSAGNNGKFVERTGSLDGQYSPMIGNTGSPYCEELDDDSPKKKNANMLKKFGVLWKKGQK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	578	2.2.26 [Sep-21-2011]
Q9ZQC5	583	Interactor of constitutiv	yes	no	0.894	0.886	0.503	1e-132
Q9LSS5	564	Interactor of constitutiv	no	no	0.887	0.909	0.440	1e-107
Q8VYU8	396	Interactor of constitutiv	no	no	0.230	0.335	0.529	3e-31
Q9M9F9	324	Interactor of constitutiv	no	no	0.320	0.570	0.368	1e-16
Q8LE98	344	Interactor of constitutiv	no	no	0.288	0.485	0.356	3e-11
F4I8B9	1345	Putative WEB family prote	no	no	0.276	0.118	0.315	3e-08

>sp|Q9ZQC5|ICR2_ARATH Interactor of constitutive active ROPs 2, chloroplastic OS=Arabidopsis thaliana GN=ICR2 PE=1 SV=1

 Score =  472 bits (1215), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 301/598 (50%), Positives = 400/598 (66%), Gaps = 81/598 (13%)

Query: 3   KTPKG-SPKVV-ERKSPRSPA--LEKQRPSRVSELESQLAQLQEDLKKAKEQLNASDSWK 58
           +TPK  SPKVV +R+SPR+P   ++K+R  +  EL SQ++QLQE+LKKAKEQL+AS++ K
Sbjct: 45  RTPKTQSPKVVADRRSPRTPVNEIQKKRTGKTPELASQISQLQEELKKAKEQLSASEALK 104

Query: 59  RRAQQEAEEAKKQLSAMSARLEESQQQLLEITTSEDTRVEELRQLSQDRDKAWQSELDAV 118
           + AQ +AEE K              QQL+EI  SED+R++ELR+LSQ+RDKAWQSEL+A+
Sbjct: 105 KEAQDQAEETK--------------QQLMEINASEDSRIDELRKLSQERDKAWQSELEAM 150

Query: 119 QKQQSMDSAALGSAMNEIQRLKFQLEKVAESEAAQTKHAESAYAEMQNLRIELTETLSLV 178
           Q+Q +MDSAAL S MNE+Q+LK QL   +ESE             ++NLR+EL ETLSLV
Sbjct: 151 QRQHAMDSAALSSTMNEVQKLKAQL---SESE------------NVENLRMELNETLSLV 195

Query: 179 EKLKNELSYCKESESQALEDVRKSQMQLETANANLEMLRSDGIKATEAYNTLSLELELSK 238
           EKL+ EL   KE E+QA E V  ++ QLE AN  LEMLRSDG+K +EA N+L+ ELE SK
Sbjct: 196 EKLRGELFDAKEGEAQAHEIVSGTEKQLEIANLTLEMLRSDGMKMSEACNSLTTELEQSK 255

Query: 239 ARVKSLEELVSKLQNDLLNSSNKLAESMGDVHLSQKNGENEEIDKLKGELDLARNELRQL 298
           + V+SLE+LV +L+ +         E+ G+      NG++  +++LK E+++AR E+ QL
Sbjct: 256 SEVRSLEQLVRQLEEE--------DEARGNA-----NGDSSSVEELKEEINVARQEISQL 302

Query: 299 RSALDASETRYQEEYIQSTLQIRSAYEQLERAKSESSQREADLETELKNVKAQIEELRAN 358
           +SA++ +E RY EEYIQSTLQIR+AYEQ++  KS  +QREA+L  ELK  KA+ + L   
Sbjct: 303 KSAVEVTERRYHEEYIQSTLQIRTAYEQVDEVKSGYAQREAELGEELKKTKAERDSLHER 362

Query: 359 LLDKETELQSISEENEGLNLKIKTNES---------NQRDSKLAVELNKLEAEVVEFKAS 409
           L+DKE +L+ + +ENE LN KIK  E          NQ + +   EL KLE++V+E +A+
Sbjct: 363 LMDKEAKLRILVDENEILNSKIKEKEEVYLNLENSLNQNEPEDTGELKKLESDVMELRAN 422

Query: 410 ILDKETELMSLTEQNGMLKMEIENREMERNKVNDEAISLAEAARVAEREALMKVGFLTEE 469
           ++DKE EL S+  Q   L+ E+E  + E+NK  D              EAL K+G LTEE
Sbjct: 423 LMDKEMELQSVMSQYESLRSEMETMQSEKNKAID--------------EALAKLGSLTEE 468

Query: 470 ADKSSRRAARVTEQLDAAQAASTEMEAELRKLKVQSDQWRKAAEAATAML-----SAGNN 524
           ADKS +RA   TEQL AAQ  +TE+EAELR+LKVQ DQWRKAAEAA  ML     +  +N
Sbjct: 469 ADKSGKRAENATEQLGAAQVTNTELEAELRRLKVQCDQWRKAAEAAATMLSGGNNNNNSN 528

Query: 525 GKFVERTGSLDGQYSPM--IGNTGSPYCEELDDD--SPKKKNANMLKKFGVLWKKGQK 578
           GK+VERTGSL+   SP+       SPY  E DD+  SPKKKN +MLKK GVL KK QK
Sbjct: 529 GKYVERTGSLE---SPLRRRNVNMSPYMGETDDELSSPKKKNGSMLKKIGVLLKKSQK 583

Acts as a scaffold, mediating interaction of ROPs with different proteins.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9LSS5|ICR3_ARATH Interactor of constitutive active ROPs 3 OS=Arabidopsis thaliana GN=ICR3 PE=2 SV=1

 Score =  390 bits (1002), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 258/586 (44%), Positives = 371/586 (63%), Gaps = 73/586 (12%)

Query: 2   NKTPKG-SPKVVERKSPRSPALEKQRPSRVSELESQLAQLQEDLKKAKEQLNASDSWKRR 60
           N+TPK  SP V+ R+SPRSP  EK+RPSR++ELE  ++QLQE+LKKAK+Q++ S++ K++
Sbjct: 43  NRTPKDKSPNVLNRRSPRSPVSEKKRPSRITELELLVSQLQEELKKAKDQISVSETSKKQ 102

Query: 61  AQQEAEEAKKQLSAMSARLEESQQQLLEITTSED----TRVEELRQLSQDRDKAWQSELD 116
           A+QEAEE++KQL  +S++LEESQ Q +E +  E+    T     + +SQ+ D  W+    
Sbjct: 103 AEQEAEESRKQLQEVSSKLEESQNQFVETSALEEETDKTGSLVFQSVSQECD--WEFSAT 160

Query: 117 AVQKQQSMDSAALGSAMNEIQRLKFQLEKVAESEAAQTKHAESAYAEMQNLRIELTETLS 176
           A ++      A L +  +EI++LK Q+E VA SEA   K AE   +E+Q LR  L +TL 
Sbjct: 161 AGER------AGLAAVAHEIRQLKLQIEMVASSEAGHVKQAELYNSEVQLLRGNLMDTLF 214

Query: 177 LVEKLKNELSYCK----ESESQALEDVRKSQMQLETANANLEMLRSDGIKATEAYNTLSL 232
            VE  +N+L  C+    E+E+ A E +R    QLE A   +E L+SDG KA E+Y  +++
Sbjct: 215 HVENFRNQLKDCEISEAETEALATETLR----QLENAKKAVEELKSDGTKAVESYKKMAV 270

Query: 233 ELELSKARVKSLEELVSKLQNDLLNSSNKLAESMGDVHLSQKNGENEEIDKLKGELDLAR 292
           ELE SK+R+  LE LV+KLQN+  +  N   E +   + S + GE+ E+D+   E+   R
Sbjct: 271 ELEQSKSRMVWLEALVNKLQNNPADLENH--EILLKDYESLRRGESNEMDE---EVSSLR 325

Query: 293 NELRQLRSALDASETRYQEEYIQSTLQIRSAYEQLERAKSESSQREADLETELKNVKAQI 352
            E+ +LR+AL+AS+ + QE  ++++ ++R                +A+L++ELK  K++I
Sbjct: 326 CEVERLRAALEASDKKDQEGNVEASSRLRI---------------QAELQSELKIAKSEI 370

Query: 353 EELRANLLDKETELQSISEENEGLNLKIKTNESNQRDSKLAVELNKLEAEVVEFKASILD 412
           +EL+A L+DKETELQ ISEE +  ++K+     NQ++  +  EL KL   +   KA ++D
Sbjct: 371 DELKARLMDKETELQFISEERDNFSMKLM---KNQKEIDVEAELKKLREAIENLKADLMD 427

Query: 413 KETELMSLTEQNGMLKMEIENREMERNKVNDEAISLAEAARVAEREALMKVGFLTEEADK 472
           KETEL  ++++N  LK +I   E +   V D               A +K+G   EEADK
Sbjct: 428 KETELQIVSDENETLKSDIHKSETD---VQD---------------AFLKLGIAMEEADK 469

Query: 473 SSRRAARVTEQLDAAQAASTEMEAELRKLKVQSDQWRKAAEAATAMLSAGNNGKFVERTG 532
           SS++A RVTEQL+A QA+++EME ELRKLKVQS+QWRKAAEAATAMLSAGNNGKF E   
Sbjct: 470 SSKKAVRVTEQLEATQASNSEMETELRKLKVQSNQWRKAAEAATAMLSAGNNGKFAEN-- 527

Query: 533 SLDGQYSPMIGNTGSPYCEELDDDSPKKKNANMLKKFGVLWKKGQK 578
                       T SPY E++DD+  KKKN N+LKK GVLWKK QK
Sbjct: 528 ---------YNQTNSPYSEDIDDELTKKKNGNVLKKIGVLWKKPQK 564

Acts as a scaffold, mediating interaction of ROPs with different proteins.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8VYU8|ICR5_ARATH Interactor of constitutive active ROPs 5 OS=Arabidopsis thaliana GN=ICR5 PE=2 SV=2

 Score =  137 bits (345), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 80/151 (52%), Positives = 111/151 (73%), Gaps = 18/151 (11%)

Query: 9   PKVV-ERKSPRSPA--LEKQRPSRVSELESQLAQLQEDLKKAKEQLNASDSWKRRAQQEA 65
           PKVV +R+S R P   ++K+R  R+ ELES ++QLQE+LKKAKE+LN S++ KR AQ+EA
Sbjct: 49  PKVVADRRSARIPLNEIQKKRTGRIPELESTISQLQEELKKAKEELNRSEALKREAQEEA 108

Query: 66  EEAKKQLSAMSARLEESQQQLLEITTSEDTRVEELRQLSQDRDKAWQSELDAVQKQQSMD 125
           E+AK               QL++I  SED+R+EELR+LSQ+RDK WQSEL+A+Q+Q  MD
Sbjct: 109 EDAK--------------HQLMDINASEDSRIEELRKLSQERDKTWQSELEAMQRQHGMD 154

Query: 126 SAALGSAMNEIQRLKFQLEKVAESEAAQTKH 156
           S AL SA+NE+Q+LK +L + +ESE  Q+K+
Sbjct: 155 STALSSAINEVQKLKSKLFE-SESELEQSKY 184

Acts as a scaffold, mediating interaction of ROPs with different proteins.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M9F9|ICR4_ARATH Interactor of constitutive active ROPs 4 OS=Arabidopsis thaliana GN=ICR4 PE=3 SV=2

 Score = 88.6 bits (218), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 76/206 (36%), Positives = 117/206 (56%), Gaps = 21/206 (10%)

Query: 376 LNLKIKTNESNQRDSKLAVELNKLEAEVVEFKASILDKETELMSLTEQNGMLKMEIENRE 435
           L+ K K +E  + D     EL   E ++   KA + D E E +SL+E+N  LK ++    
Sbjct: 137 LDEKAKESEKTKND-----ELASKEDQINVLKARLYDLEKERVSLSEENETLKDQL---- 187

Query: 436 MERNKVNDEAISLAEAARVAEREALMKVGFLTEEADKSSRRAARVTEQLDAAQAASTEME 495
               K  D  +S A+A    E E   KV  + EE ++S+   A++ ++L++ + A   +E
Sbjct: 188 ----KKTDTEMSCAKAK---EDEIASKVSQIGEELEESNETTAKLKKKLESVEEAKETLE 240

Query: 496 AELRKLKVQSDQWRKAAEAATAMLSAG--NNGKFVERTGSLDGQYSPMIGNTGSPYCEEL 553
           AE++KLKVQ++QWRKAA+AA A+LS G   NG+F E+ GS++  ++      GSP   + 
Sbjct: 241 AEMKKLKVQTEQWRKAADAAAAVLSGGVEMNGRFSEQCGSMEKHFAGRF--VGSPGMADD 298

Query: 554 DDDSPKKKNANMLKKFGVLW-KKGQK 578
            DD   K+ ++  K FG LW KKGQK
Sbjct: 299 SDDGSGKRKSSGKKMFGDLWKKKGQK 324

Acts as a scaffold, mediating interaction of ROPs with different proteins.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8LE98|ICR1_ARATH Interactor of constitutive active ROPs 1 OS=Arabidopsis thaliana GN=ICR1 PE=1 SV=1

 Score = 70.9 bits (172), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 67/188 (35%), Positives = 104/188 (55%), Gaps = 21/188 (11%)

Query: 400 EAEVVEFKASILDKETELMSLTEQNGMLKMEIENREMERNKVNDEAISLAEAARVAEREA 459
           E E+   KA + D E E  SL ++N  LK          N+++D A  ++   +  E E 
Sbjct: 169 EDEIKMLKARLYDMEKEHESLGKENESLK----------NQLSDSASEISNV-KANEDEM 217

Query: 460 LMKVGFLTEEADKSSRRAARVTEQLDAAQAASTEMEAELRKLKVQSDQWRKAAEAATAML 519
           + KV  + EE ++S  + A + E+L++ + A   +EAE++KL+VQ++QWRKAA+AA A+L
Sbjct: 218 VSKVSRIGEELEESRAKTAHLKEKLESMEEAKDALEAEMKKLRVQTEQWRKAADAAAAVL 277

Query: 520 SAGNNGKFVERTGSLD-----GQYSPMIGNTGSP-YCEELDD--DSPKKKNANMLKKFGV 571
           S        +R+GS +     G + P  G    P   ++ DD   S K+K++ M K FG 
Sbjct: 278 SGEFEMNGRDRSGSTEKYYAGGFFDPSAGFMDPPGMADDYDDGLGSGKRKSSGM-KMFGE 336

Query: 572 LW-KKGQK 578
           LW KKGQK
Sbjct: 337 LWRKKGQK 344

Acts as a scaffold, mediating interaction of ROPs with different proteins. Required for primary and adventitious root maintenance, but not for their formation.

Arabidopsis thaliana (taxid: 3702)

>sp|F4I8B9|Y1501_ARATH Putative WEB family protein At1g65010, chloroplastic OS=Arabidopsis thaliana GN=At1g65010 PE=1 SV=1

 Score = 60.5 bits (145), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 54/171 (31%), Positives = 94/171 (54%), Gaps = 11/171 (6%)

Query: 1   MNKTPK--GSPKVVERKSPRSPALEK--QRPSRVSELESQLAQLQEDLKKAKEQLNASDS 56
           ++++P    S    +R+  R P  EK   R  + +EL++QL Q+QEDLKKA EQ+     
Sbjct: 47  LDRSPPTVNSKPTPDRRPSRIPTPEKVHSRLVKGTELQTQLNQIQEDLKKADEQIELLKK 106

Query: 57  WKRRAQQEAEEAKKQLSAMSARLEE---SQQQLLEITTSEDTRVEELRQLS----QDRDK 109
            K +A  + +E++K +   + +L+E   +Q++  E    E  R  EL Q      Q +D 
Sbjct: 107 DKAKAIDDLKESEKLVEEANEKLKEALAAQKRAEESFEVEKFRAVELEQAGLEAVQKKDV 166

Query: 110 AWQSELDAVQKQQSMDSAALGSAMNEIQRLKFQLEKVAESEAAQTKHAESA 160
             ++EL++++ Q ++D +AL S   E+QR+K +L   A+++     HAE A
Sbjct: 167 TSKNELESIRSQHALDISALLSTTEELQRVKHELSMTADAKNKALSHAEEA 217

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	578
255568412	627	ATP binding protein, putative [Ricinus c	0.998	0.920	0.709	0.0
224140161	609	predicted protein [Populus trichocarpa]	0.977	0.927	0.694	0.0
224069340	601	predicted protein [Populus trichocarpa]	0.965	0.928	0.674	0.0
225439892	621	PREDICTED: interactor of constitutive ac	0.994	0.925	0.677	0.0
356548216	624	PREDICTED: interactor of constitutive ac	0.994	0.921	0.643	0.0
356537491	626	PREDICTED: interactor of constitutive ac	0.989	0.913	0.647	0.0
356572411	623	PREDICTED: interactor of constitutive ac	0.982	0.911	0.633	0.0
356503702	621	PREDICTED: interactor of constitutive ac	0.993	0.924	0.630	0.0
18076679	601	P70 protein [Nicotiana tabacum]	0.961	0.925	0.596	1e-180
359478681	624	PREDICTED: interactor of constitutive ac	0.998	0.924	0.601	1e-176

>gi|255568412|ref|XP_002525180.1| ATP binding protein, putative [Ricinus communis] gi|223535477|gb|EEF37146.1| ATP binding protein, putative [Ricinus communis]

 Score =  780 bits (2013), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 410/578 (70%), Positives = 489/578 (84%), Gaps = 1/578 (0%)

Query: 2   NKTPKG-SPKVVERKSPRSPALEKQRPSRVSELESQLAQLQEDLKKAKEQLNASDSWKRR 60
           N+TPK  SPKV ER+SPRSPA+EK+RPSRVSELESQLAQLQEDLKKAK+QLN S+SWKRR
Sbjct: 50  NRTPKDKSPKVTERRSPRSPAIEKKRPSRVSELESQLAQLQEDLKKAKDQLNTSESWKRR 109

Query: 61  AQQEAEEAKKQLSAMSARLEESQQQLLEITTSEDTRVEELRQLSQDRDKAWQSELDAVQK 120
           A QEAE+ KKQL  MSA+LEES+QQL+E++ SED RV+ELR++S DRDKAWQSEL+AVQK
Sbjct: 110 AHQEAEDTKKQLLTMSAKLEESEQQLMELSASEDARVQELRKISHDRDKAWQSELEAVQK 169

Query: 121 QQSMDSAALGSAMNEIQRLKFQLEKVAESEAAQTKHAESAYAEMQNLRIELTETLSLVEK 180
           Q SMDSAAL SAMNEIQ+LK QLE V +SE  QTKHAESA+A++Q LR+ELTETLSLVEK
Sbjct: 170 QHSMDSAALASAMNEIQKLKGQLEMVMQSENTQTKHAESAHADLQGLRMELTETLSLVEK 229

Query: 181 LKNELSYCKESESQALEDVRKSQMQLETANANLEMLRSDGIKATEAYNTLSLELELSKAR 240
           LKNELS C+ESE+QALE V K++ QLE A A  EM RS+G KA EAYN+LSLELE SK +
Sbjct: 230 LKNELSDCRESEAQALELVSKTEKQLEIAKATAEMHRSEGSKAMEAYNSLSLELEQSKTQ 289

Query: 241 VKSLEELVSKLQNDLLNSSNKLAESMGDVHLSQKNGENEEIDKLKGELDLARNELRQLRS 300
           VKSLEEL+SKL+ DL N+  KL  S  D    Q++ EN+  ++L  EL+  + EL QLRS
Sbjct: 290 VKSLEELISKLKADLANTDGKLVNSTVDTGPPQESEENDGTNQLISELNSLKFELGQLRS 349

Query: 301 ALDASETRYQEEYIQSTLQIRSAYEQLERAKSESSQREADLETELKNVKAQIEELRANLL 360
           AL+ASE RYQEEYIQSTLQIRSAYEQ+E+ K ES +RE +LE ELKN K+ IEELRA L+
Sbjct: 350 ALEASEARYQEEYIQSTLQIRSAYEQVEQVKLESRKRETELEAELKNAKSNIEELRAKLM 409

Query: 361 DKETELQSISEENEGLNLKIKTNESNQRDSKLAVELNKLEAEVVEFKASILDKETELMSL 420
           DKETELQ+ISEENEGLNLK + N+ ++R+S+LA+EL KLE E+ + KAS+LDKE EL ++
Sbjct: 410 DKETELQNISEENEGLNLKFEKNQPSERESELAIELKKLEHELADLKASLLDKEAELQNV 469

Query: 421 TEQNGMLKMEIENREMERNKVNDEAISLAEAARVAEREALMKVGFLTEEADKSSRRAARV 480
           TE+N +LKMEI+  EMER+++NDEA+SLAE A+ AEREALMK+G LTEE DK+SR+AAR 
Sbjct: 470 TEENEILKMEIKKGEMERSEINDEAVSLAETAKAAEREALMKLGHLTEEVDKNSRKAARA 529

Query: 481 TEQLDAAQAASTEMEAELRKLKVQSDQWRKAAEAATAMLSAGNNGKFVERTGSLDGQYSP 540
           TEQLDAAQAA+TEMEAELR+LKVQSDQWRKAAEAA AMLS+GNNGKFVERTGSL+  Y+ 
Sbjct: 530 TEQLDAAQAANTEMEAELRRLKVQSDQWRKAAEAAAAMLSSGNNGKFVERTGSLENSYNT 589

Query: 541 MIGNTGSPYCEELDDDSPKKKNANMLKKFGVLWKKGQK 578
           + G  GSPY E+++DDSPKKKN NMLKK GVLWKKGQK
Sbjct: 590 IAGAMGSPYSEDMEDDSPKKKNGNMLKKIGVLWKKGQK 627

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224140161|ref|XP_002323453.1| predicted protein [Populus trichocarpa] gi|222868083|gb|EEF05214.1| predicted protein [Populus trichocarpa]

 Score =  755 bits (1949), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 402/579 (69%), Positives = 477/579 (82%), Gaps = 14/579 (2%)

Query: 2   NKTPKG-SPKVVERKSPRSPALEKQRPSRVSELESQLAQLQEDLKKAKEQLNASDSWKRR 60
           ++TPK  SPKV ER+  +SPA EK+RPSR+SELE+QLAQLQEDLKKAK+QLNAS+SWKRR
Sbjct: 43  SRTPKDRSPKVTERRLSQSPATEKKRPSRISELETQLAQLQEDLKKAKDQLNASESWKRR 102

Query: 61  AQQEAEEAKKQLSAMSARLEESQQQLLEITTSEDTRVEELRQLSQDRDKAWQSELDAVQK 120
           A QEAE+ KKQL  MS + EESQQQL+E+++SED RV+ELR++S DRDKAWQSEL+A+QK
Sbjct: 103 AHQEAEDTKKQLLTMSEKFEESQQQLMELSSSEDVRVQELRKVSHDRDKAWQSELEAMQK 162

Query: 121 QQSMDSAALGSAMNEIQRLKFQLEKVAESEAAQTKHAESAYAEMQNLRIELTETLSLVEK 180
           Q S+DSAAL SAMNE+QRLK QLE V ESEA+QTKHAESAYAE+Q LR+ELTETLSLVEK
Sbjct: 163 QHSIDSAALASAMNEVQRLKNQLEMVVESEASQTKHAESAYAELQGLRLELTETLSLVEK 222

Query: 181 LKNELSYCKESESQALEDVRKSQMQLETANANLEMLRSDGIKATEAYNTLSLELELSKAR 240
           +K ELS  +ESE+QALE V K+Q QLE ANA  EML++D +KA EAY +LSLELE S+A+
Sbjct: 223 MKTELSDTRESEAQALELVSKTQKQLEEANATAEMLQADDVKAMEAYRSLSLELEQSRAQ 282

Query: 241 VKSLEELVSKLQNDLLNSSNK-LAESMGDVHLSQKNGENEEIDKLKGELDLARNELRQLR 299
           VK LEELVSKLQ D  N   K +    GDV +            L  +++L ++E+ QL+
Sbjct: 283 VKPLEELVSKLQADPANICGKTVMNPTGDVEV------------LHEKMNLLKHEVGQLK 330

Query: 300 SALDASETRYQEEYIQSTLQIRSAYEQLERAKSESSQREADLETELKNVKAQIEELRANL 359
           SAL+ASETRYQEEYIQSTLQIRSAYEQ+ER K ES  REA+LE ELK  K  IEELRANL
Sbjct: 331 SALEASETRYQEEYIQSTLQIRSAYEQVERTKLESGHREAELEAELKKAKNNIEELRANL 390

Query: 360 LDKETELQSISEENEGLNLKIKTNESNQRDSKLAVELNKLEAEVVEFKASILDKETELMS 419
           +DKETELQ ISEENEGL LKI+ N+ ++R+S+LA+EL KLE ++ E KAS+LDKE  L S
Sbjct: 391 MDKETELQGISEENEGLALKIEKNQPSERESELAMELKKLEHDLAELKASLLDKEARLQS 450

Query: 420 LTEQNGMLKMEIENREMERNKVNDEAISLAEAARVAEREALMKVGFLTEEADKSSRRAAR 479
           + E+N  L  EI+  EME++KVNDEA++LAE AR AE EALMK+G+LTEEADKSSRR AR
Sbjct: 451 VAEENETLWKEIKKGEMEKSKVNDEAVALAETARAAEHEALMKLGYLTEEADKSSRRVAR 510

Query: 480 VTEQLDAAQAASTEMEAELRKLKVQSDQWRKAAEAATAMLSAGNNGKFVERTGSLDGQYS 539
           VTEQLDAAQAA+TEMEAELR+LKVQSDQWRKAAEAA AMLS GNNGKFVERTGSLD  Y+
Sbjct: 511 VTEQLDAAQAANTEMEAELRRLKVQSDQWRKAAEAAAAMLSTGNNGKFVERTGSLDNNYN 570

Query: 540 PMIGNTGSPYCEELDDDSPKKKNANMLKKFGVLWKKGQK 578
           P+ GN GSP+ E++DDDSPKKKN NMLKK GVLWK+GQK
Sbjct: 571 PIPGNMGSPFSEDMDDDSPKKKNGNMLKKIGVLWKRGQK 609

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224069340|ref|XP_002326334.1| predicted protein [Populus trichocarpa] gi|222833527|gb|EEE72004.1| predicted protein [Populus trichocarpa]

 Score =  726 bits (1875), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 390/578 (67%), Positives = 469/578 (81%), Gaps = 20/578 (3%)

Query: 2   NKTPKG-SPKVVERKSPRSPALEKQRPSRVSELESQLAQLQEDLKKAKEQLNASDSWKRR 60
           ++TPK  SPKV ERKSPRSPA EK+RPS++SELESQLAQLQEDLKKAKEQLN S+SWKRR
Sbjct: 43  SRTPKDRSPKVTERKSPRSPATEKKRPSKISELESQLAQLQEDLKKAKEQLNTSESWKRR 102

Query: 61  AQQEAEEAKKQLSAMSARLEESQQQLLEITTSEDTRVEELRQLSQDRDKAWQSELDAVQK 120
           +QQEAE+ KKQL  MS RLEESQ QL+E+++SED RV+ELR++S DRDKAW+SEL+AVQK
Sbjct: 103 SQQEAEDTKKQLLTMSVRLEESQHQLMELSSSEDVRVQELRKISHDRDKAWESELEAVQK 162

Query: 121 QQSMDSAALGSAMNEIQRLKFQLEKVAESEAAQTKHAESAYAEMQNLRIELTETLSLVEK 180
           Q S+D +AL SAMNE QRLK QLE V ESEA+QTKH ES +AE++ LR+ELTETLSLVEK
Sbjct: 163 QHSIDYSALASAMNETQRLKTQLEMVVESEASQTKHVESVHAELKGLRLELTETLSLVEK 222

Query: 181 LKNELSYCKESESQALEDVRKSQMQLETANANLEMLRSDGIKATEAYNTLSLELELSKAR 240
           +K ELS  +ESE+QALE   K+Q QLE ANA  +ML++DG+KA EAY +LSLELE S+A+
Sbjct: 223 MKIELSDTRESEAQALELASKTQKQLEEANATADMLQADGVKAMEAYRSLSLELEQSRAQ 282

Query: 241 VKSLEELVSKLQNDLLNSSNKLAESMGDVHLSQKNGENEEIDKLKGELDLARNELRQLRS 300
            +SLEELVSKLQ DL N                   +NEE  +L+ E++L + E+ QLRS
Sbjct: 283 EQSLEELVSKLQADLANV------------------KNEETKQLEAEMNLLKIEVGQLRS 324

Query: 301 ALDASETRYQEEYIQSTLQIRSAYEQLERAKSESSQREADLETELKNVKAQIEELRANLL 360
            L+A+ETR QEEYIQSTLQIRSAYEQ+E  K ES QREA LETELK  K  IEELRANL+
Sbjct: 325 LLEATETRCQEEYIQSTLQIRSAYEQVECTKLESGQREAKLETELKKAKNNIEELRANLM 384

Query: 361 DKETELQSISEENEGLNLKIKTNESNQRDSKLAVELNKLEAEVVEFKASILDKETELMSL 420
           DKETELQ ISEENEGL LKIK N+ ++R+++LA+ +  LE ++ E KAS+LDKE +L  +
Sbjct: 385 DKETELQGISEENEGLMLKIKKNQPSEREAELAMGMKNLEHDLAELKASLLDKEAQLQRV 444

Query: 421 TEQNGMLKMEIENREMERNKVNDEAISLAEAARVAEREALMKVGFLTEEADKSSRRAARV 480
            E+N  L+ EI+  E+E++KVNDEA+++AE AR +E EALMK+G+LTEEADKSSRRAAR+
Sbjct: 445 AEENETLRTEIKKGEIEQSKVNDEAVAMAETARASEHEALMKLGYLTEEADKSSRRAARM 504

Query: 481 TEQLDAAQAASTEMEAELRKLKVQSDQWRKAAEAATAMLSAGNNGKFVERTGSLDGQYSP 540
           TEQLDAAQ A+TEMEAELR+LKVQ+DQWRKAAEAA AMLS GNNGKFVERTGSLD  Y+P
Sbjct: 505 TEQLDAAQTANTEMEAELRRLKVQADQWRKAAEAAAAMLSTGNNGKFVERTGSLDSNYNP 564

Query: 541 MIGNTGSPYCEELDDDSPKKKNANMLKKFGVLWKKGQK 578
           + GN GSP C E  DDSP+KKN NMLKK GVLWKKGQK
Sbjct: 565 IAGNMGSP-CSEDMDDSPRKKNRNMLKKIGVLWKKGQK 601

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225439892|ref|XP_002279291.1| PREDICTED: interactor of constitutive active ROPs 2, chloroplastic-like [Vitis vinifera]

 Score =  718 bits (1853), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 392/579 (67%), Positives = 485/579 (83%), Gaps = 4/579 (0%)

Query: 2   NKTPKG-SPKVVERKSPRSPALEKQRPSRVSELESQLAQLQEDLKKAKEQLNASDSWKRR 60
           ++TPK  SPK+V  KS RSP  EK+RPS++SELESQ+AQLQEDLKK K+QLN+S+SWKRR
Sbjct: 45  SRTPKDRSPKIV--KSTRSPVSEKKRPSKLSELESQVAQLQEDLKKTKDQLNSSESWKRR 102

Query: 61  AQQEAEEAKKQLSAMSARLEESQQQLLEITTSEDTRVEELRQLSQDRDKAWQSELDAVQK 120
           A QEAEEAKKQL A+SA+LEESQQQLLE++ SE+ RV+ELR++SQDRD+AWQSEL+AVQK
Sbjct: 103 AHQEAEEAKKQLLAVSAKLEESQQQLLELSASEEDRVQELRKISQDRDRAWQSELEAVQK 162

Query: 121 QQSMDSAALGSAMNEIQRLKFQLEKVAESEAAQTKHAESAYAEMQNLRIELTETLSLVEK 180
           Q SMDSAAL SAMNEIQ+LK QLE VA+SEA+QTKHAESA+ E+Q LRIEL +TLSLVE+
Sbjct: 163 QHSMDSAALVSAMNEIQKLKIQLEMVADSEASQTKHAESAHVEIQRLRIELADTLSLVEE 222

Query: 181 LKNELSYCKESESQALEDVRKSQMQLETANANLEMLRSDGIKATEAYNTLSLELELSKAR 240
           +K +L+  KESE++AL+ V ++QMQLETA A  E +RSDG+KA EAYN+++LEL+ S A+
Sbjct: 223 MKTQLNDRKESEARALKVVTQTQMQLETAKAAAETIRSDGVKAMEAYNSITLELDQSNAQ 282

Query: 241 VKSLEELVSKLQNDLLNSSN-KLAESMGDVHLSQKNGENEEIDKLKGELDLARNELRQLR 299
           V SLE LVSKLQ DL+NSS+   A    D  L+++NGENE+ ++LK EL+L R E+ QLR
Sbjct: 283 VNSLEGLVSKLQEDLVNSSSTSAANPSDDAKLARENGENEDTNQLKQELNLVRFEVGQLR 342

Query: 300 SALDASETRYQEEYIQSTLQIRSAYEQLERAKSESSQREADLETELKNVKAQIEELRANL 359
           SALDA+E RYQEEYIQSTLQIRSAYEQ ER +SES QREA+LE EL+  K  +E+L+ NL
Sbjct: 343 SALDAAEIRYQEEYIQSTLQIRSAYEQAERTRSESRQREAELEAELRKAKVIVEDLKVNL 402

Query: 360 LDKETELQSISEENEGLNLKIKTNESNQRDSKLAVELNKLEAEVVEFKASILDKETELMS 419
           +DKET+LQ+ISEEN+ LN+KI+ N+SN+R+ +L +EL K EA + + K S+LDKETEL S
Sbjct: 403 MDKETKLQNISEENKVLNVKIEQNQSNEREPELQMELKKSEATLADLKTSLLDKETELQS 462

Query: 420 LTEQNGMLKMEIENREMERNKVNDEAISLAEAARVAEREALMKVGFLTEEADKSSRRAAR 479
           +TE+N MLK+EI+ +E E +KVNDEA++  EAA+ AE+EAL K+G+LTEEADK+SRRA R
Sbjct: 463 ITEENEMLKLEIKKKETENDKVNDEAVAKIEAAKAAEKEALTKLGYLTEEADKNSRRAER 522

Query: 480 VTEQLDAAQAASTEMEAELRKLKVQSDQWRKAAEAATAMLSAGNNGKFVERTGSLDGQYS 539
           VTEQLDA QAA++E+EAELR+LKVQSDQWRKAAEAA AMLS GNNGK VERTGSLD  Y 
Sbjct: 523 VTEQLDATQAANSELEAELRRLKVQSDQWRKAAEAAAAMLSTGNNGKIVERTGSLDNNYH 582

Query: 540 PMIGNTGSPYCEELDDDSPKKKNANMLKKFGVLWKKGQK 578
            +    GSP  E++DDDSPKKKN NMLKK GVLWKKGQK
Sbjct: 583 TIGARIGSPCSEDMDDDSPKKKNGNMLKKIGVLWKKGQK 621

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356548216|ref|XP_003542499.1| PREDICTED: interactor of constitutive active ROPs 2, chloroplastic-like [Glycine max]

 Score =  673 bits (1737), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 373/580 (64%), Positives = 470/580 (81%), Gaps = 5/580 (0%)

Query: 2   NKTPKG-SPKVVERKSPRSPALEKQRPSRVSELESQLAQLQEDLKKAKEQLNASDSWKRR 60
           +KTPK  SPKV ERKSPRSP  EK++PSRV E ESQLAQL+EDLK+ K++LN+S+SWKR+
Sbjct: 46  SKTPKNKSPKVTERKSPRSPISEKKQPSRVQESESQLAQLEEDLKRTKDKLNSSESWKRK 105

Query: 61  AQQEAEEAKKQLSAMSARLEESQQQLLEITTSEDTRVEELRQLSQDRDKAWQSELDAVQK 120
           AQQEAEEAKKQL AMS  LEESQQQLLE++ SE+ R++EL ++SQDRD+AW+SEL+AVQK
Sbjct: 106 AQQEAEEAKKQLLAMSKELEESQQQLLELSASEEERLQELHKISQDRDQAWKSELEAVQK 165

Query: 121 QQSMDSAALGSAMNEIQRLKFQLEKVAESEAAQTKHAESAYAEMQNLRIELTETLSLVEK 180
           Q SMDS AL SAMNEIQ+LK QLE+V ESEA    +AES  AE+++LR+EL E L+LVEK
Sbjct: 166 QHSMDSTALMSAMNEIQKLKMQLERVYESEAVHISNAESDNAEIEDLRMELDEALTLVEK 225

Query: 181 LKNELSYCKESESQALEDVRKSQMQLETANANLEMLRSDGIKATEAYNTLSLELELSKAR 240
           LKNELS CKESES+ LE V K+QMQLE AN  +E L+ +G KA+EAY +L+LEL+ ++A+
Sbjct: 226 LKNELSDCKESESRDLEVVGKTQMQLEAANKTVETLQLEGEKASEAYKSLALELDQARAQ 285

Query: 241 VKSLEELVSKLQNDLLNSSNKLAESM---GDVHLSQKNGENEEIDKLKGELDLARNELRQ 297
           VKSLEELVSKLQ DL+  +NK    +    +  L+ KN ENEEI++LK EL  A++E  Q
Sbjct: 286 VKSLEELVSKLQADLVGGANKNMLGLVIEAEPELAPKNVENEEINQLKAELVSAKSEATQ 345

Query: 298 LRSALDASETRYQEEYIQSTLQIRSAYEQLERAKSESSQREADLETELKNVKAQIEELRA 357
           L+SALD SE RYQEEYI+STLQIRSA+EQLE AKSESS+R+ + E ELK  +A IEELR 
Sbjct: 346 LKSALDVSEVRYQEEYIRSTLQIRSAFEQLEHAKSESSRRQGENE-ELKRARADIEELRE 404

Query: 358 NLLDKETELQSISEENEGLNLKIKTNESNQRDSKLAVELNKLEAEVVEFKASILDKETEL 417
            L+DKE++LQ +SEENE L  ++K N+ ++++S+  VEL KL+A++ + K  +LD+ETEL
Sbjct: 405 RLMDKESQLQGLSEENEILMSRMKQNQPSEKESEPVVELKKLDADMAKLKERLLDRETEL 464

Query: 418 MSLTEQNGMLKMEIENREMERNKVNDEAISLAEAARVAEREALMKVGFLTEEADKSSRRA 477
            ++TE+N  LK EI+  E+E+NK+ DEA++ AEAAR  EREAL+K+G++TEEADKS+RR 
Sbjct: 465 QNVTEENNALKKEIKREELEKNKIPDEAVASAEAARATEREALVKLGYITEEADKSNRRV 524

Query: 478 ARVTEQLDAAQAASTEMEAELRKLKVQSDQWRKAAEAATAMLSAGNNGKFVERTGSLDGQ 537
           A++TEQLDAAQAA++E+EAELR+LKVQSDQWRKAAEAA AM+SAGNNGKFVERTGSLD  
Sbjct: 525 AQITEQLDAAQAANSELEAELRRLKVQSDQWRKAAEAAAAMISAGNNGKFVERTGSLDSS 584

Query: 538 YSPMIGNTGSPYCEELDDDSPKKKNANMLKKFGVLWKKGQ 577
           Y+ +     SPY E  DDDSPKKKN NMLKK GVLWKK  
Sbjct: 585 YNSITAKMSSPYSENTDDDSPKKKNTNMLKKIGVLWKKNH 624

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356537491|ref|XP_003537260.1| PREDICTED: interactor of constitutive active ROPs 2, chloroplastic-like [Glycine max]

 Score =  667 bits (1721), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 376/581 (64%), Positives = 469/581 (80%), Gaps = 9/581 (1%)

Query: 2   NKTPKG-SPKVVERKSPRSPALEKQRPSRVSELESQLAQLQEDLKKAKEQLNASDSWKRR 60
           +KTPK  SPKV ERKSPRSP  EK+RP RV ELESQLAQL+EDLK+ K+QLN+S+SWKR+
Sbjct: 46  SKTPKNRSPKVTERKSPRSPISEKKRPGRVQELESQLAQLEEDLKRTKDQLNSSESWKRK 105

Query: 61  AQQEAEEAKKQLSAMSARLEESQQQLLEITTSEDTRVEELRQLSQDRDKAWQSELDAVQK 120
           AQQEAEEA KQL A+S  LEESQQQLLE++ SE+ R++ELR++SQDRD+AWQSEL+AVQK
Sbjct: 106 AQQEAEEANKQLLAVSKELEESQQQLLELSASEEERLQELRKISQDRDRAWQSELEAVQK 165

Query: 121 QQSMDSAALGSAMNEIQRLKFQLEKVAESEAAQTKHAESAYAEMQNLRIELTETLSLVEK 180
           Q SMDS AL SAMNEIQ+LK QLE+V E EA    +AES  AE+++LR+EL E L+LVEK
Sbjct: 166 QHSMDSTALVSAMNEIQKLKIQLERVRECEAVHISNAESDNAEIEDLRMELDEALTLVEK 225

Query: 181 LKNELSYCKESESQALEDVRKSQMQLETANANLEMLRSDGIKATEAYNTLSLELELSKAR 240
           LK+E+  CKESES+ALE V K+QMQLE AN  +E L+ +G KA+EAY +L+LELE S+A+
Sbjct: 226 LKSEVIDCKESESRALEVVGKTQMQLEAANKTVETLQLEGEKASEAYKSLALELEQSRAQ 285

Query: 241 VKSLEELVSKLQNDLLNSSNKLAESMGDVH-----LSQKNGENEEIDKLKGELDLARNEL 295
           VKSLEELVSKLQ DL+   NK    +G V+     L+ KN +NEEI+ LK EL  A++E 
Sbjct: 286 VKSLEELVSKLQADLVGGGNK--NMLGPVNEAELELAPKNVQNEEINHLKAELVSAKSEA 343

Query: 296 RQLRSALDASETRYQEEYIQSTLQIRSAYEQLERAKSESSQREADLETELKNVKAQIEEL 355
            QL+SALD SE RYQEEYI+STLQIRSA+EQLE AKSESSQR+ +L  ELK  +A IEEL
Sbjct: 344 VQLKSALDVSEVRYQEEYIRSTLQIRSAFEQLEHAKSESSQRQGELNEELKRARADIEEL 403

Query: 356 RANLLDKETELQSISEENEGLNLKIKTNESNQRDSKLAVELNKLEAEVVEFKASILDKET 415
           R  ++DKE++LQ +S+ENE L  +IK N+ ++RDS+  V L KL+A++ E K  +LD+ET
Sbjct: 404 REKMMDKESQLQGLSDENEMLVSRIKQNQPSERDSEPVVALKKLDADITELKKRLLDRET 463

Query: 416 ELMSLTEQNGMLKMEIENREMERNKVNDEAISLAEAARVAEREALMKVGFLTEEADKSSR 475
           EL ++TE+N  LK EI+  E+E+NK+ DEA++ AEAAR AEREALMK+G++TEEADKS++
Sbjct: 464 ELQNVTEENNALKKEIKRVELEKNKIPDEAVASAEAARAAEREALMKLGYITEEADKSNQ 523

Query: 476 RAARVTEQLDAAQAASTEMEAELRKLKVQSDQWRKAAEAATAMLSAGNNGKFVERTGSLD 535
           R A++TEQLD AQAA++E+EAELR+LKVQSDQWRKAAEAA AM+S+GNNGKFVERTGSLD
Sbjct: 524 RVAQITEQLDTAQAANSELEAELRRLKVQSDQWRKAAEAAAAMISSGNNGKFVERTGSLD 583

Query: 536 GQYSPMIGNTGSPYCEEL-DDDSPKKKNANMLKKFGVLWKK 575
             Y+ +     SPY E+  DDDSPKKKN NMLKK GVLWKK
Sbjct: 584 SSYNSVTAKMSSPYSEDTDDDDSPKKKNTNMLKKIGVLWKK 624

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356572411|ref|XP_003554362.1| PREDICTED: interactor of constitutive active ROPs 2, chloroplastic-like [Glycine max]

 Score =  661 bits (1706), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 363/573 (63%), Positives = 456/573 (79%), Gaps = 5/573 (0%)

Query: 8   SPKVVERKSPRSPALEKQRPSRVSELESQLAQLQEDLKKAKEQLNASDSWKRRAQQEAEE 67
           SPK++ER+SP SP  EK+RPS+V ELESQ+A+LQEDLK AK+QLN+S+SWKR+AQQEAEE
Sbjct: 52  SPKIIERRSPHSPISEKKRPSKVQELESQIARLQEDLKNAKDQLNSSESWKRKAQQEAEE 111

Query: 68  AKKQLSAMSARLEESQQQLLEITTSEDTRVEELRQLSQDRDKAWQSELDAVQKQQSMDSA 127
           AKKQL  M   LEES QQLL+ + SE+ R++ELR++SQDRD+ WQSE+ AVQKQQ+MDSA
Sbjct: 112 AKKQLVDMMKELEESHQQLLDFSASEEVRLQELRKISQDRDREWQSEIQAVQKQQAMDSA 171

Query: 128 ALGSAMNEIQRLKFQLEKVAESEAAQTKHAESAYAEMQNLRIELTETLSLVEKLKNELSY 187
           AL SAMNEIQ+LK QLE+V ESEA Q   AESA+AE+Q L++EL +TL LVEKLK+ELS 
Sbjct: 172 ALASAMNEIQKLKIQLERVCESEATQINSAESAHAEIQELKMELDKTLFLVEKLKSELSD 231

Query: 188 CKESESQALEDVRKSQMQLETANANLEMLRSDGIKATEAYNTLSLELELSKARVKSLEEL 247
            KESES+ +E V K QMQLETAN  +E LRSDG+KA EAY +L+LELE S+ + KSLE L
Sbjct: 232 YKESESRVMEVVGKMQMQLETANQTVETLRSDGMKAAEAYKSLALELEQSRTQAKSLEAL 291

Query: 248 VSKLQNDLLNSSNKLAESMGDVH---LSQKNGENEEIDKLKGELDLARNELRQLRSALDA 304
           VSKLQ DLL+S+NK        +    SQ+NGENEEI++LK EL  A+ E+ +L+SALD 
Sbjct: 292 VSKLQADLLSSANKSISGSTPTNENGPSQENGENEEINQLKAELISAKVEVGKLKSALDI 351

Query: 305 SETRYQEEYIQSTLQIRSAYEQLERAKSESSQREADLETELKNVKAQIEELRANLLDKET 364
           SE RYQEEYIQSTLQIR A+EQLE  KSESSQRE +L  EL+  KA  EELRA+L+DKE+
Sbjct: 352 SEVRYQEEYIQSTLQIRCAFEQLELTKSESSQREVELYEELRRAKANTEELRASLMDKES 411

Query: 365 ELQSISEENEGLNLKIKTNESNQRDSKLAVELNKLEAEVVEFKASILDKETELMSLTEQN 424
           +  S+SEEN+ LN KIK N+S +R S+L +EL KL A+V E K  +LD+ETEL ++  +N
Sbjct: 412 QFFSVSEENKELNSKIKENQSTKRQSELVIELKKLVADVEELKEKLLDRETELQNIAVEN 471

Query: 425 GMLKMEIENREMERNKVNDEAISLAEAARVAEREALMKVGFLTEEADKSSRRAARVTEQL 484
            MLKME+  +E + NK+ +EA++ AEAAR AE+EAL K+G +TEEADKS++R ARVTEQL
Sbjct: 472 SMLKMEL--KEFKTNKITNEALASAEAARAAEQEALTKLGHITEEADKSNKRVARVTEQL 529

Query: 485 DAAQAASTEMEAELRKLKVQSDQWRKAAEAATAMLSAGNNGKFVERTGSLDGQYSPMIGN 544
           DAAQAA++E+EAELR+LKVQSDQWRKAAEAA +M+SAGNNGKFV+R  S +  ++ + G 
Sbjct: 530 DAAQAANSELEAELRRLKVQSDQWRKAAEAAASMISAGNNGKFVDRNCSRENSFNSVTGK 589

Query: 545 TGSPYCEELDDDSPKKKNANMLKKFGVLWKKGQ 577
             SPY  + DD+SPKKKN NMLKK GVLW++  
Sbjct: 590 MNSPYLLDTDDESPKKKNTNMLKKIGVLWRRNH 622

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356503702|ref|XP_003520644.1| PREDICTED: interactor of constitutive active ROPs 2, chloroplastic-like [Glycine max]

 Score =  642 bits (1657), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 363/576 (63%), Positives = 461/576 (80%), Gaps = 2/576 (0%)

Query: 3   KTPKG-SPKVVERKSPRSPALEKQRPSRVSELESQLAQLQEDLKKAKEQLNASDSWKRRA 61
           KTPK  SPKV+E +SP SP  EK+RPS+V ELESQ+A+LQEDLK AK+QLN+S+SWKR+A
Sbjct: 46  KTPKDRSPKVIECRSPHSPISEKKRPSKVQELESQIARLQEDLKNAKDQLNSSESWKRKA 105

Query: 62  QQEAEEAKKQLSAMSARLEESQQQLLEITTSEDTRVEELRQLSQDRDKAWQSELDAVQKQ 121
           QQEAEEAKKQL  ++  L+ES QQLL+ + SE+ R++ELR++SQDRD+ WQSEL+AVQKQ
Sbjct: 106 QQEAEEAKKQLVDLTKELQESHQQLLDFSASEEVRLQELRKISQDRDREWQSELEAVQKQ 165

Query: 122 QSMDSAALGSAMNEIQRLKFQLEKVAESEAAQTKHAESAYAEMQNLRIELTETLSLVEKL 181
           Q+MDSAAL SAMNEIQ+LK QLE+V  SEA Q   +ESA+AE+Q L++EL +TLSLVEKL
Sbjct: 166 QAMDSAALASAMNEIQKLKIQLERVCGSEATQINSSESAHAEIQELKMELDKTLSLVEKL 225

Query: 182 KNELSYCKESESQALEDVRKSQMQLETANANLEMLRSDGIKATEAYNTLSLELELSKARV 241
           KNE+  CKESES+ALE V K QMQLETAN  +E LRSDG+KA EAY +L+ ELE S+ + 
Sbjct: 226 KNEVGDCKESESRALEVVGKMQMQLETANQTVETLRSDGMKAAEAYKSLAFELEQSRTQA 285

Query: 242 KSLEELVSKLQNDLLNSSNKLAESMGDVHLSQKNGENEEIDKLKGELDLARNELRQLRSA 301
           KSLEELVSKLQ DLL+++NK        + ++ + ENEEI++LK EL  A+ E+ QL+S 
Sbjct: 286 KSLEELVSKLQADLLSNANKSMLGPTPTNENEPSQENEEINQLKAELISAKAEVGQLKSV 345

Query: 302 LDASETRYQEEYIQSTLQIRSAYEQLERAKSESSQREADLETELKNVKAQIEELRANLLD 361
           LD SE RYQEEYIQSTLQIR A+EQLERAKSESSQRE +L  EL+  KA  EELRANL+D
Sbjct: 346 LDISEVRYQEEYIQSTLQIRCAFEQLERAKSESSQREVELYEELRRAKADTEELRANLMD 405

Query: 362 KETELQSISEENEGLNLKIKTNESNQRDSKLAVELNKLEAEVVEFKASILDKETELMSLT 421
           KE++L S+S EN  LN KI  N+S +R S+L +EL KL+A+V E K ++LD+ETEL ++ 
Sbjct: 406 KESQLLSLSGENMELNSKINENQSTRRQSELVIELKKLDADVEELKENLLDRETELQNIA 465

Query: 422 EQNGMLKMEIENREMERNKVNDEAISLAEAARVAEREALMKVGFLTEEADKSSRRAARVT 481
            +N MLKM+I+  E+E+NK+ +EA++ AEAAR AE+EAL K+G +TEEADKS++R  RVT
Sbjct: 466 AENSMLKMDIK-EELEKNKITNEALASAEAARAAEQEALTKLGSITEEADKSNKRVVRVT 524

Query: 482 EQLDAAQAASTEMEAELRKLKVQSDQWRKAAEAATAMLSAGNNGKFVERTGSLDGQYSPM 541
           EQLDAAQAA++E+EAELR+LKVQSDQWRKAAEAA +MLSAGNNGKFV+R  S +  ++ +
Sbjct: 525 EQLDAAQAANSELEAELRRLKVQSDQWRKAAEAAASMLSAGNNGKFVDRNCSRENSFNSV 584

Query: 542 IGNTGSPYCEELDDDSPKKKNANMLKKFGVLWKKGQ 577
            G   SPY  + D +SPKKKN NM+KK GVLW++  
Sbjct: 585 TGKMNSPYLLDTDGESPKKKNTNMMKKIGVLWRRNH 620

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18076679|emb|CAC84774.1| P70 protein [Nicotiana tabacum]

 Score =  638 bits (1646), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 345/578 (59%), Positives = 459/578 (79%), Gaps = 22/578 (3%)

Query: 2   NKTPKG-SPKVVERKSPRSPALEKQRPSRVSELESQLAQLQEDLKKAKEQLNASDSWKRR 60
            +TPK  SPKVV R+SPRSP +EK+RPS+VS+LE+QLAQLQE+LKKAK+QLN+S+S K+R
Sbjct: 45  TRTPKDRSPKVVGRRSPRSPVIEKKRPSKVSDLEAQLAQLQEELKKAKDQLNSSESLKKR 104

Query: 61  AQQEAEEAKKQLSAMSARLEESQQQLLEITTSEDTRVEELRQLSQDRDKAWQSELDAVQK 120
           AQQ+A+EAKKQL+ MS +LE+S++QLLE++ SE+ R+ ELR++SQDRD+AW+SEL+A+QK
Sbjct: 105 AQQDADEAKKQLAVMSEKLEDSKKQLLELSDSEEARLLELRKISQDRDRAWESELEAIQK 164

Query: 121 QQSMDSAALGSAMNEIQRLKFQLEKVAESEAAQTKHAESAYAEMQNLRIELTETLSLVEK 180
           Q  +DSAAL SA+NEIQ+LK QL++VA+SEA Q  HAESA+AE+Q+LR+EL ETL+LVEK
Sbjct: 165 QHELDSAALASALNEIQKLKIQLDRVADSEATQAHHAESAHAEIQSLRVELMETLTLVEK 224

Query: 181 LKNELSYCKESESQALEDVRKSQMQLETANANLEMLRSDGIKATEAYNTLSLELELSKAR 240
           L+N+L+  KESE+ +LE+V K+QMQLE +    + LRS+G+KA +A  TLSLELE SK R
Sbjct: 225 LRNQLNDSKESEACSLEEVSKAQMQLEMSKMTEDTLRSEGLKAMDACRTLSLELEKSKDR 284

Query: 241 VKSLEELVSKLQNDLLNSSNKLAESMGDVHLSQKNGENEEIDKLKGELDLARNELRQLRS 300
           V SLEELVSKLQ    +S + +A        ++ NG   E D+LK E+        +LR+
Sbjct: 285 VASLEELVSKLQ----SSESSVA--------AEGNGVTVEADELKAEVS-------ELRA 325

Query: 301 ALDASETRYQEEYIQSTLQIRSAYEQLERAKSESSQREADLETELKNVKAQIEELRANLL 360
           AL+ASE +YQEEYIQSTLQIRSAYE +ER KSES+QREA+ E +L   K++++EL+  L+
Sbjct: 326 ALEASERKYQEEYIQSTLQIRSAYELVERTKSESTQREAEWEAKLNETKSEVQELKEKLM 385

Query: 361 DKETELQSISEENEGLNLKIKTNESNQRDSKLAVELNKLEAEVVEFKASILDKETELMSL 420
           +KE ELQ+IS+EN+GL+L ++  +S  ++ +L+ +L + E+   + + ++LDKE EL SL
Sbjct: 386 NKEAELQNISDENKGLSLHVEQMQSADKEFELSAQLKQSESISGDLRGNLLDKENELQSL 445

Query: 421 TEQNGMLKMEIENREMERNKVNDEAISLAEAARVAEREALMKVGFLTEEADKSSRRAARV 480
            E+N +LK EI  RE E  K++DEA++L EAA+ AE EAL+K+G LTEEAD+SSR+ ARV
Sbjct: 446 MEENELLKSEIGKRESESTKMSDEALALVEAAKTAESEALIKLGDLTEEADRSSRKVARV 505

Query: 481 TEQLDAAQAASTEMEAELRKLKVQSDQWRKAAEAATAMLSAGNNGKFVERTGSLDGQYSP 540
           TE+LDAAQ A++EME ELR+LKVQ DQWRKAAEAA +MLSAGNNGK+VERTGSLD  Y  
Sbjct: 506 TEELDAAQTANSEMETELRRLKVQCDQWRKAAEAAASMLSAGNNGKYVERTGSLD--YHT 563

Query: 541 MIGNTGSPYCEELDDDSPKKKNANMLKKFGVLWKKGQK 578
           + G  GSP  ++L+DDSPKKKN NMLK+ GVL KKGQK
Sbjct: 564 IGGKLGSPLLDDLEDDSPKKKNNNMLKRIGVLLKKGQK 601

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359478681|ref|XP_002282027.2| PREDICTED: interactor of constitutive active ROPs 3-like [Vitis vinifera]

 Score =  625 bits (1611), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 350/582 (60%), Positives = 457/582 (78%), Gaps = 5/582 (0%)

Query: 2   NKTPKG-SPKVVERKSPRSPALEKQRPSRVSELESQLAQLQEDLKKAKEQLNASDSWKRR 60
           ++TPK  SPKV+ER+SPRSP  EK+RP++V+ELESQ+++LQEDLKKAK+QL++S+SWKR 
Sbjct: 43  SRTPKDKSPKVIERRSPRSPVSEKKRPNKVTELESQISKLQEDLKKAKDQLSSSESWKRS 102

Query: 61  AQQEAEEAKKQLSAMSARLEESQQQLLEITTSEDTRVEELRQLSQDRDKAWQSELDAVQK 120
           AQQ+AEE+KKQLSAMS++LEESQ+QLLE++ SE+ RV EL+++SQ+RD+AW+SEL AV+K
Sbjct: 103 AQQDAEESKKQLSAMSSKLEESQRQLLELSASEEDRVIELQKISQERDRAWESELRAVEK 162

Query: 121 QQSMDSAALGSAMNEIQRLKFQLEKVAESEAAQTKHAESAYAEMQNLRIELTETLSLVEK 180
           Q S+DSAAL SAM+EIQRLK QLE   ES+ AQTKH ESA +E+ +L+  L ETLSLVE 
Sbjct: 163 QHSVDSAALASAMSEIQRLKSQLEMKVESQVAQTKHTESADSELHSLKENLAETLSLVEN 222

Query: 181 LKNELSYCKESESQALEDVRKSQMQLETANANLEMLRSDGIKATEAYNTLSLELELSKAR 240
           +KN+L   KESE+QA     ++ +QLETA + +E LR+DGIKA E YN++SLEL  S+AR
Sbjct: 223 MKNQLKDSKESEAQAQALASETLLQLETAKSTIEALRTDGIKAAETYNSISLELNESRAR 282

Query: 241 VKSLEELVSKLQNDLLNSSNKLAESMGDVHLS-QKNGENEEI---DKLKGELDLARNELR 296
           V  LE LVSKL+ DL  + +      G+ +L  Q+  E+EEI   ++LK EL   + E+ 
Sbjct: 283 VNFLEGLVSKLKTDLTEARSSSPNYAGNDNLDEQQASEHEEIEESNQLKAELASLKIEVG 342

Query: 297 QLRSALDASETRYQEEYIQSTLQIRSAYEQLERAKSESSQREADLETELKNVKAQIEELR 356
           QL+SALDA+E RY EE++QST+QIRSAYE +E  KS SS R+A+L+ EL+  KA IEEL+
Sbjct: 343 QLKSALDAAEIRYHEEHVQSTVQIRSAYEHVEHVKSASSSRQAELQVELEKTKADIEELK 402

Query: 357 ANLLDKETELQSISEENEGLNLKIKTNESNQRDSKLAVELNKLEAEVVEFKASILDKETE 416
           ANL+DKETELQ ISEENEGL +K+++N S QR+ +L  EL K + +V + K +++DKETE
Sbjct: 403 ANLMDKETELQGISEENEGLMMKLQSNLSCQREYELERELKKSKEDVAKLKENLMDKETE 462

Query: 417 LMSLTEQNGMLKMEIENREMERNKVNDEAISLAEAARVAEREALMKVGFLTEEADKSSRR 476
              + ++N  LK+E++ REM++ K  D   S  EAAR AE+EAL+K+G++ EEADKSSRR
Sbjct: 463 FQYVVDENETLKLEMKKREMDKGKFGDGIASEIEAARAAEQEALLKLGYVMEEADKSSRR 522

Query: 477 AARVTEQLDAAQAASTEMEAELRKLKVQSDQWRKAAEAATAMLSAGNNGKFVERTGSLDG 536
           AARV EQL+A Q A++EMEAELRKLKVQSDQWRKAAEAA AMLSAG+NGK  E+TGSLD 
Sbjct: 523 AARVAEQLEATQVANSEMEAELRKLKVQSDQWRKAAEAAAAMLSAGSNGKLTEKTGSLDS 582

Query: 537 QYSPMIGNTGSPYCEELDDDSPKKKNANMLKKFGVLWKKGQK 578
            Y+ + G   SPY E+LDD+SPKKKN N+LKK GVLWKK  K
Sbjct: 583 NYNHITGKITSPYSEDLDDESPKKKNGNVLKKIGVLWKKPHK 624

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	578
TAIR|locus:2061758	583	RIP2 "ROP interactive partner	0.939	0.931	0.42	1.9e-99
UNIPROTKB|Q8VXD2	601	p70 "P70 protein" [Nicotiana t	0.946	0.910	0.414	1.5e-90
TAIR|locus:2144040	564	RIP5 "ROP interactive partner	0.923	0.946	0.305	6e-48
TAIR|locus:2083951	396	RIP3 "ROP interactive partner	0.515	0.752	0.366	3.7e-39
TAIR|locus:2010826	1345	AT1G65010 [Arabidopsis thalian	0.756	0.324	0.274	1.2e-25
TAIR|locus:2032095	324	RIP4 "AT1G78430" [Arabidopsis	0.413	0.737	0.322	1.9e-23
DICTYBASE|DDB_G0286985	1024	zipA "zipper-like domain-conta	0.820	0.462	0.222	2.7e-22
TAIR|locus:2020342	344	ICR1 "AT1G17140" [Arabidopsis	0.427	0.718	0.321	6.3e-22
UNIPROTKB|Q90WH5	891	LOC429272 "Atrial myosin heacy	0.821	0.533	0.256	1.2e-20
TAIR|locus:2075402	806	AT3G02930 "AT3G02930" [Arabido	0.747	0.535	0.236	2.9e-20

TAIR|locus:2061758 RIP2 "ROP interactive partner 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 987 (352.5 bits), Expect = 1.9e-99, P = 1.9e-99
 Identities = 252/600 (42%), Positives = 362/600 (60%)

Query:     3 KTPKGSPKVVER-KSPRSPALEKQRPSRVSELESQLAQLQEDLKKAKEQLNASDSWKRRA 61
             K+P  +PK   + K+  S  +     +++   ++Q  ++  D +  +  +N  +  K+R 
Sbjct:    17 KSPASTPKTARKLKTSESDPVSSPN-TKIRTPKTQSPKVVADRRSPRTPVN--EIQKKRT 73

Query:    62 QQEAEEAKKQLSAMSARLEESQQQLL--EITTSE-DTRVEELRQLSQDRDKAWQSELDAV 118
              +  E A  Q+S +   L+++++QL   E    E   + EE +Q   + + +  S +D +
Sbjct:    74 GKTPELAS-QISQLQEELKKAKEQLSASEALKKEAQDQAEETKQQLMEINASEDSRIDEL 132

Query:   119 QKQQSMDSAALGSAMNEIQRLKFQLEKVAESEA---AQTKHAESAYAE-MQNLRIELTET 174
             +K       A  S +  +QR +  ++  A S      Q   A+ + +E ++NLR+EL ET
Sbjct:   133 RKLSQERDKAWQSELEAMQR-QHAMDSAALSSTMNEVQKLKAQLSESENVENLRMELNET 191

Query:   175 LSLVEKLKNELSYCKESESQALEDVRKSQMQLETANANLEMLRSDGIKATEAYNTLSLEL 234
             LSLVEKL+ EL   KE E+QA E V  ++ QLE AN  LEMLRSDG+K +EA N+L+ EL
Sbjct:   192 LSLVEKLRGELFDAKEGEAQAHEIVSGTEKQLEIANLTLEMLRSDGMKMSEACNSLTTEL 251

Query:   235 ELSKARVKSLEELVSKLQNDLLNSSNKLAESMGDVHLSQKNGENEEIDKLKGELDLARNE 294
             E SK+ V+SLE+LV +L+ +         E+ G+      NG++  +++LK E+++AR E
Sbjct:   252 EQSKSEVRSLEQLVRQLEEE--------DEARGNA-----NGDSSSVEELKEEINVARQE 298

Query:   295 LRQLRSALDASETRYQEEYIQSTLQIRSAYEQLERAKSESSQREADLETELKNVKAQIEE 354
             + QL+SA++ +E RY EEYIQSTLQIR+AYEQ++  KS  +QREA+L  ELK  KA+ + 
Sbjct:   299 ISQLKSAVEVTERRYHEEYIQSTLQIRTAYEQVDEVKSGYAQREAELGEELKKTKAERDS 358

Query:   355 LRANLLDKETELQSISEENEGLNLKIKTNES---------NQRDSKLAVELNKLEAEVVE 405
             L   L+DKE +L+ + +ENE LN KIK  E          NQ + +   EL KLE++V+E
Sbjct:   359 LHERLMDKEAKLRILVDENEILNSKIKEKEEVYLNLENSLNQNEPEDTGELKKLESDVME 418

Query:   406 FKASILDKETELMSLTEQNGMLKMEIENREMERNKVNDEAISLXXXXXXXXXXXLMKVGF 465
              +A+++DKE EL S+  Q   L+ E+E  + E+NK  DEA++              K+G 
Sbjct:   419 LRANLMDKEMELQSVMSQYESLRSEMETMQSEKNKAIDEALA--------------KLGS 464

Query:   466 LTEEADKSSRRAARVTEQLDAAQAASTEMEAELRKLKVQSDQWRKAAEAATAMLSAGNN- 524
             LTEEADKS +RA   TEQL AAQ  +TE+EAELR+LKVQ DQWRKAAEAA  MLS GNN 
Sbjct:   465 LTEEADKSGKRAENATEQLGAAQVTNTELEAELRRLKVQCDQWRKAAEAAATMLSGGNNN 524

Query:   525 ----GKFVERTGSLDGQYSPMIGNTGSPYCEELDDD--SPKKKNANMLKKFGVLWKKGQK 578
                 GK+VERTGSL+        N  SPY  E DD+  SPKKKN +MLKK GVL KK QK
Sbjct:   525 NNSNGKYVERTGSLESPLRRRNVNM-SPYMGETDDELSSPKKKNGSMLKKIGVLLKKSQK 583

GO:0009507 "chloroplast" evidence=IDA

GO:0000911 "cytokinesis by cell plate formation" evidence=RCA

UNIPROTKB|Q8VXD2 p70 "P70 protein" [Nicotiana tabacum (taxid:4097)]

 Score = 903 (322.9 bits), Expect = 1.5e-90, P = 1.5e-90
 Identities = 243/586 (41%), Positives = 352/586 (60%)

Query:     8 SPKVVERK-SPRSPALEKQRPSRVSELESQLAQLQEDLKKAKEQLNASDSWKRRAQQEAE 66
             SP    R    RSP +  +R  R   +E +      DL+    QL   +  K + Q  + 
Sbjct:    40 SPNPATRTPKDRSPKVVGRRSPRSPVIEKKRPSKVSDLEAQLAQLQ-EELKKAKDQLNSS 98

Query:    67 EAKKQLSAMSARLEESQQQLLEITTS-EDTRVEELRQLSQDRDKAWQSELDAVQKQQSMD 125
             E+ K+ +   A  +E+++QL  ++   ED++ ++L +LS D ++A   EL  +   Q  D
Sbjct:    99 ESLKKRAQQDA--DEAKKQLAVMSEKLEDSK-KQLLELS-DSEEARLLELRKIS--QDRD 152

Query:   126 SAALGSAMNEIQR--------LKFQLEKVAESEAAQTKHAESAYAEMQNLRIELTETLSL 177
              A   S +  IQ+        L   L ++ + +    + A+S   +  +      E  SL
Sbjct:   153 RA-WESELEAIQKQHELDSAALASALNEIQKLKIQLDRVADSEATQAHHAESAHAEIQSL 211

Query:   178 VEKLKNELSYCKESESQALEDVRKSQM-QLE-TANANLEMLRSDGIKATEAYNTLSLE-L 234
               +L   L+  ++  +Q L D ++S+   LE  + A +++  S   K TE  +TL  E L
Sbjct:   212 RVELMETLTLVEKLRNQ-LNDSKESEACSLEEVSKAQMQLEMS---KMTE--DTLRSEGL 265

Query:   235 ELSKA-RVKSLEELVSKLQNDLLNSS-NKLAESMGDVHLSQKNGENEEIDKLKGELDLAR 292
             +   A R  SLE   SK +   L    +KL  S   V  ++ NG   E D+LK E+    
Sbjct:   266 KAMDACRTLSLELEKSKDRVASLEELVSKLQSSESSV-AAEGNGVTVEADELKAEVS--- 321

Query:   293 NELRQLRSALDASETRYQEEYIQSTLQIRSAYEQLERAKSESSQREADLETELKNVKAQI 352
                 +LR+AL+ASE +YQEEYIQSTLQIRSAYE +ER KSES+QREA+ E +L   K+++
Sbjct:   322 ----ELRAALEASERKYQEEYIQSTLQIRSAYELVERTKSESTQREAEWEAKLNETKSEV 377

Query:   353 EELRANLLDKETELQSISEENEGLNLKIKTNESNQRDSKLAVELNKLEAEVVEFKASILD 412
             +EL+  L++KE ELQ+IS+EN+GL+L ++  +S  ++ +L+ +L + E+   + + ++LD
Sbjct:   378 QELKEKLMNKEAELQNISDENKGLSLHVEQMQSADKEFELSAQLKQSESISGDLRGNLLD 437

Query:   413 KETELMSLTEQNGMLKMEIENREMERNKVNDEAISLXXXXXXXXXXXLMKVGFLTEEADK 472
             KE EL SL E+N +LK EI  RE E  K++DEA++L           L+K+G LTEEAD+
Sbjct:   438 KENELQSLMEENELLKSEIGKRESESTKMSDEALALVEAAKTAESEALIKLGDLTEEADR 497

Query:   473 SSRRAARVTEQLDAAQAASTEMEAELRKLKVQSDQWRKAAEAATAMLSAGNNGKFVERTG 532
             SSR+ ARVTE+LDAAQ A++EME ELR+LKVQ DQWRKAAEAA +MLSAGNNGK+VERTG
Sbjct:   498 SSRKVARVTEELDAAQTANSEMETELRRLKVQCDQWRKAAEAAASMLSAGNNGKYVERTG 557

Query:   533 SLDGQYSPMIGNTGSPYCEELDDDSPKKKNANMLKKFGVLWKKGQK 578
             SLD  Y  + G  GSP  ++L+DDSPKKKN NMLK+ GVL KKGQK
Sbjct:   558 SLD--YHTIGGKLGSPLLDDLEDDSPKKKNNNMLKRIGVLLKKGQK 601

GO:0051219 "phosphoprotein binding" evidence=IPI

TAIR|locus:2144040 RIP5 "ROP interactive partner 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 501 (181.4 bits), Expect = 6.0e-48, P = 6.0e-48
 Identities = 184/602 (30%), Positives = 293/602 (48%)

Query:     3 KTPKGSPKVVERKSPRSPALEKQRPSRVSELESQLAQLQEDLKKAKEQLNASDSWKRRAQ 62
             K   GSP V ++ SPR+      RP +++ LE + +           +  + +   RR+ 
Sbjct:     5 KARNGSPDVPKKVSPRAA-----RPLKIAALEPESSSSPISATNRTPKDKSPNVLNRRSP 59

Query:    63 QEAEEAKKQLSAMSARLEESQQQLLEITTSEDTRVEELRQLSQDRDKAWQSELDAVQKQQ 122
             +     KK+ S ++  LE    QL E    E  + ++   +S+   K  + E +  +KQ 
Sbjct:    60 RSPVSEKKRPSRIT-ELELLVSQLQE----ELKKAKDQISVSETSKKQAEQEAEESRKQL 114

Query:   123 SMDSAALGSAMN---EIQRLKFQLEKVAESE-AAQTKHAESAYAEMQNLRIELTETLSLV 178
                S+ L  + N   E   L+ + +K       + ++  +  ++     R  L      +
Sbjct:   115 QEVSSKLEESQNQFVETSALEEETDKTGSLVFQSVSQECDWEFSATAGERAGLAAVAHEI 174

Query:   179 EKLKNELSYCKESESQALEDVRKSQMQLETANANLEMLRS---DGIKATEAYNTLSLELE 235
              +LK ++     SE+  ++       Q E  N+ +++LR    D +   E +     + E
Sbjct:   175 RQLKLQIEMVASSEAGHVK-------QAELYNSEVQLLRGNLMDTLFHVENFRNQLKDCE 227

Query:   236 LSKARVKSLE-ELVSKLQN------DLLNSSNKLAESMGD--VHLSQKNGENEEIDKLKG 286
             +S+A  ++L  E + +L+N      +L +   K  ES     V L Q       ++ L  
Sbjct:   228 ISEAETEALATETLRQLENAKKAVEELKSDGTKAVESYKKMAVELEQSKSRMVWLEALVN 287

Query:   287 EL-----DLARNE--LRQLRSALDASETRYQEEYIQSTLQIRSAYEQLERAKSESSQREA 339
             +L     DL  +E  L+   S L   E+   +E + S   +R   E+L RA  E+S ++ 
Sbjct:   288 KLQNNPADLENHEILLKDYES-LRRGESNEMDEEVSS---LRCEVERL-RAALEASDKK- 341

Query:   340 DLETELKNVKAQIEELRANLLDKETELQSISEENEGLNLKIKTNESNQRDSKLAVELNKL 399
             D E    NV+A    LR    + ++EL+    E + L  ++   E+  +   ++ E +  
Sbjct:   342 DQEG---NVEAS-SRLRIQA-ELQSELKIAKSEIDELKARLMDKETELQF--ISEERDNF 394

Query:   400 EAEVVEFKASILDKETELMSLTEQNGMLKMEIENREMERNKVNDEAISLXXXXXXXXXX- 458
               ++++ +  I D E EL  L E    LK ++ ++E E   V+DE  +L           
Sbjct:   395 SMKLMKNQKEI-DVEAELKKLREAIENLKADLMDKETELQIVSDENETLKSDIHKSETDV 453

Query:   459 --XLMKVGFLTEEADKSSRRAARVTEQLDAAQAASTEMEAELRKLKVQSDQWRKAAEAAT 516
                 +K+G   EEADKSS++A RVTEQL+A QA+++EME ELRKLKVQS+QWRKAAEAAT
Sbjct:   454 QDAFLKLGIAMEEADKSSKKAVRVTEQLEATQASNSEMETELRKLKVQSNQWRKAAEAAT 513

Query:   517 AMLSAGNNGKFVERTGSLDGQYSPMIGNTGSPYCEELDDDSPKKKNANMLKKFGVLWKKG 576
             AMLSAGNNGKF E        Y+     T SPY E++DD+  KKKN N+LKK GVLWKK 
Sbjct:   514 AMLSAGNNGKFAEN-------YN----QTNSPYSEDIDDELTKKKNGNVLKKIGVLWKKP 562

Query:   577 QK 578
             QK
Sbjct:   563 QK 564

GO:0005576 "extracellular region" evidence=ISM

GO:0005886 "plasma membrane" evidence=IDA

GO:0042127 "regulation of cell proliferation" evidence=RCA

TAIR|locus:2083951 RIP3 "ROP interactive partner 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 418 (152.2 bits), Expect = 3.7e-39, P = 3.7e-39
 Identities = 123/336 (36%), Positives = 200/336 (59%)

Query:     9 PKVV-ERKSPRSPA--LEKQRPSRVSELESQLAQLQEDLKKAKEQLNASDSWKRRAQQEA 65
             PKVV +R+S R P   ++K+R  R+ ELES ++QLQE+LKKAKE+LN S++ KR AQ+EA
Sbjct:    49 PKVVADRRSARIPLNEIQKKRTGRIPELESTISQLQEELKKAKEELNRSEALKREAQEEA 108

Query:    66 EEAKKQLSAMSARLEESQQQLLEITTSEDTRVEELRQLSQDRDKAWQSELDAVQKQQSMD 125
             E+AK               QL++I  SED+R+EELR+LSQ+RDK WQSEL+A+Q+Q  MD
Sbjct:   109 EDAK--------------HQLMDINASEDSRIEELRKLSQERDKTWQSELEAMQRQHGMD 154

Query:   126 SAALGSAMNEIQRLKFQLEKVAESEAAQTKHA----ESAYAEMQNLRIELTETLSL--VE 179
             S AL SA+NE+Q+LK +L + +ESE  Q+K+     E    +++  R+   ++ S   VE
Sbjct:   155 STALSSAINEVQKLKSKLFE-SESELEQSKYEVRSLEKLVRQLEEERVNSRDSSSSMEVE 213

Query:   180 KLKNELSYCKESESQALEDVR--KSQMQLETANANLEMLRSDGIKATEAYNTL--SLELE 235
             +LK  ++  ++  +Q    V   +++ Q E   + L+ +RS   + TEA  +     E E
Sbjct:   214 ELKEAMNLSRQEITQLKSAVEAAETRYQEEYIQSTLQ-IRS-AYEQTEAVKSRYSQREAE 271

Query:   236 LSKARVKSLEELVSKLQNDLLNSSNKLAESMGDVHLSQKNGENEEIDKLKGELDLARNEL 295
             L++   ++ +E +  L+ +L+    K  ES GD+    K  E++ ++ ++G L     EL
Sbjct:   272 LTEELNRTKDE-IEGLRKELMEKV-KEDESTGDL----KKLESDLME-VRGSLMDKEMEL 324

Query:   296 RQLRSALDASETRYQEEYIQSTLQ-IRSAYEQLERA 330
             + LRSA++        E +++ L+ ++   EQ  +A
Sbjct:   325 QILRSAMEKKVETANTEAMEAELKRVKIQCEQWRKA 360

GO:0005634 "nucleus" evidence=IDA

GO:0005874 "microtubule" evidence=IDA

GO:0009664 "plant-type cell wall organization" evidence=IDA

GO:0043622 "cortical microtubule organization" evidence=IDA

TAIR|locus:2010826 AT1G65010 [Arabidopsis thaliana (taxid:3702)]

 Score = 324 (119.1 bits), Expect = 1.2e-25, P = 1.2e-25
 Identities = 130/474 (27%), Positives = 227/474 (47%)

Query:     1 MNKTPK--GSPKVVERKSPRSPALEK--QRPSRVSELESQLAQLQEDLKKAKEQLNASDS 56
             ++++P    S    +R+  R P  EK   R  + +EL++QL Q+QEDLKKA EQ+     
Sbjct:    47 LDRSPPTVNSKPTPDRRPSRIPTPEKVHSRLVKGTELQTQLNQIQEDLKKADEQIELLKK 106

Query:    57 WKRRAQQEAEEAKKQLSAMSARLEES---QQQLLEITTSEDTRVEELRQLS----QDRDK 109
              K +A  + +E++K +   + +L+E+   Q++  E    E  R  EL Q      Q +D 
Sbjct:   107 DKAKAIDDLKESEKLVEEANEKLKEALAAQKRAEESFEVEKFRAVELEQAGLEAVQKKDV 166

Query:   110 AWQSELDAVQKQQSMDSAALGSAMNEIQRLKFQLEKVAESEAAQTKHAESAYAEMQNLRI 169
               ++EL++++ Q ++D +AL S   E+QR+K +L   A+++     HAE A  ++  +  
Sbjct:   167 TSKNELESIRSQHALDISALLSTTEELQRVKHELSMTADAKNKALSHAEEA-TKIAEIHA 225

Query:   170 ELTETL-SLVEKLKNELSYCKESES-QALEDVRKSQMQLETANANLEMLR--SDGIKATE 225
             E  E L S + +LK  L   +E E+ +  E V K + ++E     LE +      +K  E
Sbjct:   226 EKAEILASELGRLKALLGSKEEKEAIEGNEIVSKLKSEIELLRGELEKVSILESSLKEQE 285

Query:   226 AY-NTLSLELELSKARVK----SLEELVSK---LQNDLLNSS---NKLAESMGDVHLSQK 274
                  L ++LE +K        S+EE  +K   L+ ++  S+   +  +ESM  V + Q 
Sbjct:   286 GLVEQLKVDLEAAKMAESCTNSSVEEWKNKVHELEKEVEESNRSKSSASESMESV-MKQL 344

Query:   275 NGENEEIDKLKGELDLARNELRQLRSALDASETRYQEEYIQSTL--QIRSAYEQL-ERAK 331
                N  + + K +    + ++  L   ++A  T  +E   Q  +  +  S  E L E  K
Sbjct:   345 AELNHVLHETKSDNAAQKEKIELLEKTIEAQRTDLEEYGRQVCIAKEEASKLENLVESIK 404

Query:   332 SESSQREADLETELKNVKAQIEELRANLLDKETELQSISEENEGLNLKIKTNESNQRDSK 391
             SE    + +    L N KA    ++ NLLD+ TEL SI  E      K++  +S +    
Sbjct:   405 SELEISQEEKTRALDNEKAATSNIQ-NLLDQRTEL-SIELER----CKVEEEKSKKDMES 458

Query:   392 LAVELNKLEAEVVEFKASILDKETELMSLTEQNGMLKMEIENREMERNKVNDEA 445
             L + L +   E  E KA++L  + EL +   Q   LK+  +    +  K+ ++A
Sbjct:   459 LTLALQEASTESSEAKATLLVCQEELKNCESQVDSLKLASKETNEKYEKMLEDA 512

GO:0005634 "nucleus" evidence=ISM

GO:0009908 "flower development" evidence=IMP

GO:0007020 "microtubule nucleation" evidence=RCA

TAIR|locus:2032095 RIP4 "AT1G78430" [Arabidopsis thaliana (taxid:3702)]

 Score = 277 (102.6 bits), Expect = 1.9e-23, P = 1.9e-23
 Identities = 87/270 (32%), Positives = 144/270 (53%)

Query:   319 QIRSAYEQLERAKSESSQREAD---LETELKNVKAQIEELRANLLDK-ETELQSISEENE 374
             Q+  A E+L   K + ++ EA     + EL   K++     A   D    +    ++  E
Sbjct:    76 QLGQAQEELRLLKQQLAKAEAAKKRAQEELHRKKSKKPNTPAPERDDIPGDGHQETDVFE 135

Query:   375 GLNLKIKTNESNQRDSKLAVELNKLEAEVVEFKASILDKETELMSLTEQNGMLKMEIENR 434
              L+ K K +E  + D     EL   E ++   KA + D E E +SL+E+N  LK +++  
Sbjct:   136 VLDEKAKESEKTKND-----ELASKEDQINVLKARLYDLEKERVSLSEENETLKDQLKKT 190

Query:   435 EMERN--KVNDEAISLXXXXXXXXXXXLMKVGFLTEEADKSSRRAARVTEQLDAAQAAST 492
             + E +  K  ++ I+              KV  + EE ++S+   A++ ++L++ + A  
Sbjct:   191 DTEMSCAKAKEDEIA-------------SKVSQIGEELEESNETTAKLKKKLESVEEAKE 237

Query:   493 EMEAELRKLKVQSDQWRKAAEAATAMLSAG--NNGKFVERTGSLDGQYSPMIGNTGSP-Y 549
              +EAE++KLKVQ++QWRKAA+AA A+LS G   NG+F E+ GS++  ++      GSP  
Sbjct:   238 TLEAEMKKLKVQTEQWRKAADAAAAVLSGGVEMNGRFSEQCGSMEKHFAGRF--VGSPGM 295

Query:   550 CEELDDDSPKKKNANMLKKFGVLWKK-GQK 578
              ++ DD S K+K++   K FG LWKK GQK
Sbjct:   296 ADDSDDGSGKRKSSGK-KMFGDLWKKKGQK 324

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0000911 "cytokinesis by cell plate formation" evidence=RCA

GO:0006346 "methylation-dependent chromatin silencing" evidence=RCA

GO:0009855 "determination of bilateral symmetry" evidence=RCA

GO:0009887 "organ morphogenesis" evidence=RCA

GO:0010051 "xylem and phloem pattern formation" evidence=RCA

GO:0016246 "RNA interference" evidence=RCA

GO:0048439 "flower morphogenesis" evidence=RCA

GO:0048519 "negative regulation of biological process" evidence=RCA

DICTYBASE|DDB_G0286985 zipA "zipper-like domain-containing protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 292 (107.8 bits), Expect = 2.7e-22, P = 2.7e-22
 Identities = 113/508 (22%), Positives = 246/508 (48%)

Query:    24 KQRPSRVSELESQLAQLQEDLKKAKEQLNASDSWKRRAQQEAEEAKKQLSAMSARLEESQ 83
             + +   +  ++SQL Q  ED +   ++L + +   ++  Q+ ++ K QL   S   E   
Sbjct:   531 QSKDQELQNVKSQLEQQSEDSESKDQKLKSVELTLQQTLQQLQDVKSQLEQQSEHNESKD 590

Query:    84 QQL--LEITTSEDTRVEELRQLSQDRD-KAWQSELDAVQKQQSMDSAALGSAMNEIQRLK 140
             ++L  +E+   +  + ++    S+D   K  +SEL +V++Q S  S+   S   E+  +K
Sbjct:   591 EKLKSIELNLQQQLQSKDSELSSKDEQLKCLESELSSVKEQLSSQSSNTDS---ELSSVK 647

Query:   141 FQLEKVAESEAAQTKHAESAYAEMQNLRIELTETLSLVEKLKNELSYCKESESQALEDVR 200
              QL  +++    ++K  + +  + Q   IE     S ++ +K++LS  K+ E Q+ +D  
Sbjct:   648 DQL--LSKDSELKSKDEQLSNKDSQIKSIE-----SDLQSVKDQLS-SKDQELQSTKDQL 699

Query:   201 KSQ-MQLETANANLEMLRSDGIKATEAYNTLSLELELSKARVKSLEELVSKLQNDLLNSS 259
              S+  QL   +  ++ + SD     +  ++   EL+ +K ++ S ++ +   ++ L    
Sbjct:   700 SSKDEQLSNKDTQIKSIESDLQSVKDQLSSKDQELQSTKDQLSSKDQELQSTKDQLSTKD 759

Query:   260 NKLAESMGDVHLSQKNGENEEIDKLKGELDLARNELR----QLRSALDASETRYQEEYIQ 315
              +L +S  D  LS ++   +++     EL   +++L     +L+S  D   T+  E  +Q
Sbjct:   760 QEL-QSAKD-QLSCQSSTTDQLSAKDTELQSTKDQLSSKDSELQSIKDQLSTKDSE--LQ 815

Query:   316 STL-QIRSAYEQLERAKSESSQREADLET---ELKNVKAQIEELRANLLDKETELQSISE 371
             S+  Q+ S   +L+  K + S +++DL++   +L +  + ++  +  L  K+ ELQS+ +
Sbjct:   816 SSKDQLSSKDSELQSIKDQLSSKDSDLQSVKDQLSSKDSDLQSTKDQLSSKDQELQSVKD 875

Query:   372 E--NEGLNLKIKTNESNQRDSKLAVELNKLEAEVVEFKASILDKETELMSLTEQNGMLKM 429
             E  ++   L+  T++ +++DSK++     LE +  EF +   +K+TE+  L  Q   L  
Sbjct:   876 ELTSKDQELQQITSKQSEQDSKVSQIQQDLENKNAEFLSVTFEKQTEIDQLKTQIQDLNN 935

Query:   430 EIENREMERNKVNDEAISLXXXXXXXXXXXLMKVGFLTEEADKSSRR---AARVTEQLDA 486
              I N +   N  N+ + +               +  L ++ D+   R    +   +QL A
Sbjct:   936 IINNNKNNNNN-NNNSNTENGNANGNGEIKADDIQSLQDQIDEGKARYDVISNQNKQLQA 994

Query:   487 AQA-ASTEMEAELRKLKVQSDQWRKAAE 513
             + A A+T+ E   ++L + ++ +++  E
Sbjct:   995 SLAEANTKFENAQKRLDITTNLYKQLRE 1022

GO:0005615 "extracellular space" evidence=IDA

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0044351 "macropinocytosis" evidence=RCA

TAIR|locus:2020342 ICR1 "AT1G17140" [Arabidopsis thaliana (taxid:3702)]

 Score = 263 (97.6 bits), Expect = 6.3e-22, P = 6.3e-22
 Identities = 92/286 (32%), Positives = 145/286 (50%)

Query:   315 QSTLQIRSAYEQLERAKSESSQREADLETELK--NVKAQIEE--LRANLLDKETELQSIS 370
             Q+  ++R   EQL  A++   Q + +L  + K  N  A++EE    A  +D++     + 
Sbjct:    76 QAQEELRLLKEQLANAEAVKKQAQDELHKKSKKPNPLARVEESATEAERIDRDEIPGDVQ 135

Query:   371 EENEGLNL---KIKTNESNQRDSKLAVE-LNKLEAEVVEFKASILDKETELMSLTEQNGM 426
             +E +   +   KI   E   R      E L   E E+   KA + D E E  SL ++N  
Sbjct:   136 KETDVFEVPVEKIAVEEEELRSGNDEAEKLVAKEDEIKMLKARLYDMEKEHESLGKENES 195

Query:   427 LKMEIENR--EMERNKVN-DEAISLXXXXXXXXXXXLMKVGFLTEEADKSSRRAARVTEQ 483
             LK ++ +   E+   K N DE +S              KV  + EE ++S  + A + E+
Sbjct:   196 LKNQLSDSASEISNVKANEDEMVS--------------KVSRIGEELEESRAKTAHLKEK 241

Query:   484 LDAAQAASTEMEAELRKLKVQSDQWRKAAEAATAMLSAG--NNGKFVERTGSLD-----G 536
             L++ + A   +EAE++KL+VQ++QWRKAA+AA A+LS     NG+  +R+GS +     G
Sbjct:   242 LESMEEAKDALEAEMKKLRVQTEQWRKAADAAAAVLSGEFEMNGR--DRSGSTEKYYAGG 299

Query:   537 QYSPMIGNTGSP-YCEELDDD--SPKKKNANMLKKFGVLW-KKGQK 578
              + P  G    P   ++ DD   S K+K++ M K FG LW KKGQK
Sbjct:   300 FFDPSAGFMDPPGMADDYDDGLGSGKRKSSGM-KMFGELWRKKGQK 344

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0005634 "nucleus" evidence=IDA

GO:0090404 "pollen tube tip" evidence=IDA

GO:2000012 "regulation of auxin polar transport" evidence=IMP

UNIPROTKB|Q90WH5 LOC429272 "Atrial myosin heacy chain" [Gallus gallus (taxid:9031)]

 Score = 276 (102.2 bits), Expect = 1.2e-20, P = 1.2e-20
 Identities = 133/518 (25%), Positives = 231/518 (44%)

Query:    30 VSELESQLAQLQEDLKKAKEQLNASDSWKRRAQQEAEEAKKQLSAMSARLEESQQQLLEI 89
             + +LE+   QL+E LKK   +LN  ++     Q  + + +K+L  + AR+EE +++L E 
Sbjct:    21 IMDLENDKQQLEERLKKKDFELNTLNARIEDEQAISAQLQKKLKELQARIEELEEEL-EA 79

Query:    90 TTSEDTRVEELR-QLSQDRDKAWQSELDAVQKQQSMDSAALGSAMNEIQRLKFQLEKVA- 147
               +   +VE+LR +L Q+ ++     L+      S+          E Q+L+  LE+   
Sbjct:    80 ERTGRAKVEKLRSELLQELEET-SERLEEAGGATSVQLELNKKREAEFQKLRRDLEEATL 138

Query:   148 --ESEAA--QTKHAESAYAEMQNLRIELTETLSLVEKLKNELSYCKESESQALEDVRKSQ 203
               E+ AA  + KHA+S          EL+E L  ++++K +L   K      L+DV  + 
Sbjct:   139 QHEATAATLRKKHADSV--------AELSEQLDNLQRVKQKLEKEKSELKLELDDVNSNT 190

Query:   204 MQLETANANLEMLRSDGIKATE-AYNTLSLELELSKARVKSLEELVSKLQNDLLNSSNKL 262
              QL  A  NLE +     + TE   N    +LE ++  V  L    +KLQ +    S +L
Sbjct:   191 EQLIKAKTNLEKM----CRTTEDQMNEHRSKLEEAQRTVTDLSTQRAKLQTENSELSRQL 246

Query:   263 AESMGDVH-LSQ-KNGENEEIDKLKGELD---LARNELRQ-LRSA---LDASETRYQEEY 313
              E    ++ L++ K    ++++ LK +L+    A+N L   L+SA    D    +Y+EE 
Sbjct:   247 EEKEAFINQLTRGKLTYTQQLEDLKRQLEEEAKAKNALAHALQSAQHDCDLLREQYEEE- 305

Query:   314 IQSTLQIRSAYEQLERAKSESSQREADLETELKNVKAQIEELRANLLDKETELQSISEEN 373
             +++  +++ A   L +A SE +Q     ET+      ++EE +  L  +   LQ   E  
Sbjct:   306 MEAKAELQRA---LSKANSEVAQWRTKYETDAIQRTEELEEAKKKLAQR---LQEAEEAV 359

Query:   374 EGLNLKIKTNESNQRDSKLAVELNKLEAEVVEFKASI--LDKETELMSLTEQNGMLKMEI 431
             E +N K  + E  +   +L  E+  L A+V    A+   LDK+             K E 
Sbjct:   360 EAVNAKCSSLEKTKH--RLQNEIEDLMADVERSNAAAAALDKKQRNFDKILSEWKQKFEE 417

Query:   432 ENREMERNKVNDEAISLXXXXXXXXXX-XLMKVGFLTEEADKSSRRAARVTEQLDAAQAA 490
                E+E ++    ++S             L  +     E          +TEQL A+Q +
Sbjct:   418 SQTELEASQKEARSLSTELFKLKNAYEESLEHLETFKRENKNLQEEILDLTEQLGASQKS 477

Query:   491 STEMEAELRKLKVQSDQWRKAAEAATAMLSAGNNGKFV 528
               E+E   ++L  +  + + A E A A L     GK +
Sbjct:   478 IHELEKVRKQLDAEKLELQAALEEAEASLEH-EEGKIL 514

GO:0003774 "motor activity" evidence=IEA

GO:0016459 "myosin complex" evidence=IEA

TAIR|locus:2075402 AT3G02930 "AT3G02930" [Arabidopsis thaliana (taxid:3702)]

 Score = 272 (100.8 bits), Expect = 2.9e-20, P = 2.9e-20
 Identities = 108/457 (23%), Positives = 221/457 (48%)

Query:     5 PKGSPKV-VERKSPRSPAL-EKQ--RPSRVSELESQLAQLQEDLKKAKEQLNASDSWKRR 60
             P  + K   +++SP++P   EK   R  RVSE + Q  Q++EDLKKA E + + ++ K +
Sbjct:    53 PSSNSKPSTDKRSPKAPTPPEKTQIRAVRVSESQPQSVQIKEDLKKANELIASLENEKAK 112

Query:    61 AQQEAEEAKKQLSAMSARLEES---QQQLLEITTSEDTRVEELR-QLSQDRDKAWQSELD 116
             A  + +EA+K+    S +L+E+   Q++ LE    E   V E   +  Q +++  + EL+
Sbjct:   113 ALDQLKEARKEAEEASEKLDEALEAQKKSLENFEIEKFEVVEAGIEAVQRKEEELKKELE 172

Query:   117 AVQKQQSMDSAALGSAMNEIQRLKFQLEKVAESEAAQTKHAESAYAEMQNLRIELTETLS 176
              V+ Q + +SA L     E++ +  +L    ++++     A+ A ++M  +  E  E LS
Sbjct:   173 NVKNQHASESATLLLVTQELENVNQELANAKDAKSKALCRADDA-SKMAAIHAEKVEILS 231

Query:   177 L-VEKLKNELSYCKESESQALEDVR-KSQMQLETANANLEMLRSDGIKATEAYNTLSLEL 234
               + +LK  L   +E E  +  ++  K   ++     +LE  RS   K  E    +  +L
Sbjct:   232 SELIRLKALLDSTREKEIISKNEIALKLGAEIVDLKRDLENARSLEAKVKELEMIIE-QL 290

Query:   235 ELSKARVKSLEELVSKLQNDLLNSSNKLAESMGDVHLSQKNGENEEIDKLKGELDLARNE 294
              +     K  E       ++  N + +L + + + +  +K      +   K +L+++ + 
Sbjct:   291 NVDLEAAKMAESYAHGFADEWQNKAKELEKRLEEANKLEKCASVSLVSVTK-QLEVSNSR 349

Query:   295 LRQLRSAL-DASET-RYQEEYIQST-LQIRSAYEQLERAKSESSQREADLETELKNVKAQ 351
             L  + S + D  E     E  + S  + +  + ++L  A+ ESS+ E + E +LKN    
Sbjct:   350 LHDMESEITDLKEKIELLEMTVASQKVDLEKSEQKLGIAEEESSKSEKEAE-KLKNELET 408

Query:   352 IEELRANLLDKETE----LQSISEENEGLNLKIKTNESNQRDSKLAVELNKLEAEVVEFK 407
             + E +   L KE +    +Q + EE + +  ++++++  +  SK A+E   L + + E  
Sbjct:   409 VNEEKTQALKKEQDATSSVQRLLEEKKKILSELESSKEEEEKSKKAME--SLASALHEVS 466

Query:   408 ASILDKETELMSLTEQNGMLKMEIENREMERNKVNDE 444
             +   + + +L+S  +QN   + +IE+ ++     N++
Sbjct:   467 SESRELKEKLLSRGDQN--YETQIEDLKLVIKATNNK 501

GO:0005783 "endoplasmic reticulum" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9ZQC5	ICR2_ARATH	No assigned EC number	0.5033	0.8944	0.8867	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	578
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	3e-12
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	3e-11
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	9e-11
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	4e-09
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	6e-09
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	6e-08
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	9e-08
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	1e-07
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	1e-07
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	1e-07
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	3e-07
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	3e-07
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	4e-07
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	4e-07
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	6e-07
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	6e-07
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	9e-07
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	1e-06
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	3e-06
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	4e-06
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	7e-06
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	1e-05
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	1e-05
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	1e-05
PRK11281	1113	PRK11281, PRK11281, hypothetical protein; Provisio	2e-05
COG4372	499	COG4372, COG4372, Uncharacterized protein conserve	2e-05
PRK11281	1113	PRK11281, PRK11281, hypothetical protein; Provisio	4e-05
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	5e-05
pfam13514	1118	pfam13514, AAA_27, AAA domain	5e-05
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	6e-05
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	6e-05
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	7e-05
pfam12128	1198	pfam12128, DUF3584, Protein of unknown function (D	7e-05
PRK02224	880	PRK02224, PRK02224, chromosome segregation protein	9e-05
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	2e-04
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	3e-04
pfam12128	1198	pfam12128, DUF3584, Protein of unknown function (D	6e-04
TIGR04211	198	TIGR04211, SH3_and_anchor, SH3 domain protein	9e-04
pfam12128	1198	pfam12128, DUF3584, Protein of unknown function (D	0.001
PRK04863	1486	PRK04863, mukB, cell division protein MukB; Provis	0.001
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	0.002
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	0.002
TIGR04211	198	TIGR04211, SH3_and_anchor, SH3 domain protein	0.002
TIGR01843	423	TIGR01843, type_I_hlyD, type I secretion membrane	0.002
pfam13166	713	pfam13166, AAA_13, AAA domain	0.003
pfam01576	859	pfam01576, Myosin_tail_1, Myosin tail	0.003
COG3264	835	COG3264, COG3264, Small-conductance mechanosensiti	0.004
PRK12704	520	PRK12704, PRK12704, phosphodiesterase; Provisional	0.004

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 69.3 bits (170), Expect = 3e-12
 Identities = 73/355 (20%), Positives = 153/355 (43%), Gaps = 24/355 (6%)

Query: 25   QRPSRVSELESQLAQLQEDLKKAKEQLNASDSWKRRAQQEAEEAKKQLSAMSARLEESQQ 84
            +R   + ELE ++ +L+E + + ++ L          ++E E+ +K+L  +S ++   ++
Sbjct: 674  ERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRK 733

Query: 85   QLLEITTSEDTRVEELRQLSQDRDKAWQSELDAVQKQQSMDSAALGSAMNEIQRLKFQLE 144
             L  +    +   E + QLS++  +  ++E++ ++++       L  A  EI+ L+ Q+E
Sbjct: 734  DLARLEAEVEQLEERIAQLSKELTEL-EAEIEELEERLEEAEEELAEAEAEIEELEAQIE 792

Query: 145  KVAESEAAQTKHAESAYAEMQNLRIELTETLSLVEKLKNELSYCKESESQALEDVRKSQM 204
            ++ E   A  +  +   AE+  L  E       +E L+  ++  +       E + +   
Sbjct: 793  QLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSE 852

Query: 205  QLETANANLEMLRSDGIKATEAYNTLSLELELSKARVKSLEELVSKLQNDLLNSSNKLAE 264
             +E+  A +E       +  E    L  ELE       SLEE ++ L+++L   S +L E
Sbjct: 853  DIESLAAEIE-------ELEELIEELESELEALLNERASLEEALALLRSELEELSEELRE 905

Query: 265  SMGDVHLSQKNGENEEIDKLKGELDLARNELRQLRSALDASETRYQEEYIQSTL--QIRS 322
                           +  +L+ EL+  R +L QL   L       + + +Q  L  +   
Sbjct: 906  L------------ESKRSELRRELEELREKLAQLE--LRLEGLEVRIDNLQERLSEEYSL 951

Query: 323  AYEQLERAKSESSQREADLETELKNVKAQIEELRANLLDKETELQSISEENEGLN 377
              E+ E  +++    E +    LK ++ +I+EL    L    E + + E  + L 
Sbjct: 952  TLEEAEALENKIEDDEEEARRRLKRLENKIKELGPVNLAAIEEYEELKERYDFLT 1006

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 66.3 bits (162), Expect = 3e-11
 Identities = 77/353 (21%), Positives = 146/353 (41%), Gaps = 19/353 (5%)

Query: 158  ESAYAEMQNLRIELTETLSLVEKLKNELSYCKESESQALEDVRKSQMQLETANANLEMLR 217
             +   E++ L  EL E  + +EKL+ EL   K       + + + + QLE     LE L+
Sbjct: 663  LAQKRELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELK 722

Query: 218  SDGIKATEAYNTLSLELELSKARVKSLEELVSKLQNDLLNSSNKLAESMGDVHLSQKNGE 277
             +     E    L   LE  +  ++ LEE + +LQ  L     +L     +  L++   E
Sbjct: 723  RELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELES--LEEALAKLKEE 780

Query: 278  NEEIDKLKGELDLARNELRQLRSALDASETRYQEEYIQSTLQIRSAYEQLERAKSESSQR 337
             EE+++ +  L     EL +     +      + E      +     +++E  + E  + 
Sbjct: 781  IEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEEL 840

Query: 338  EAD---LETELKNVKAQIEELRANLLDKETELQSISEENEGLNLKIKTNESNQRDSKLAV 394
            E     LE EL+ ++ ++EEL+  L + E E + + +E + L  + +         +L  
Sbjct: 841  EEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKE---------ELEE 891

Query: 395  ELNKLEAEVVEFKASILDKETELMSLTEQNGMLKMEIENREMERNKVNDEAISLAEAARV 454
            EL +LE+E+ E K  I      L  L  +   L++E+   E E  +  ++ +       +
Sbjct: 892  ELRELESELAELKEEIEKLRERLEELEAKLERLEVELPELEEELEEEYEDTLETELEREI 951

Query: 455  ----AEREALMKVGFLT-EEADKSSRRAARVTEQLDAAQAASTEMEAELRKLK 502
                 E EAL  V     EE ++   R   +  Q +  + A  ++   + +L 
Sbjct: 952  ERLEEEIEALGPVNLRAIEEYEEVEERYEELKSQREDLEEAKEKLLEVIEELD 1004

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 64.7 bits (158), Expect = 9e-11
 Identities = 79/359 (22%), Positives = 164/359 (45%), Gaps = 18/359 (5%)

Query: 26   RPSRVSELESQLAQLQEDLKKAKEQLNASDSWKRRAQQEAEEAKKQLSAMSARLEESQQQ 85
            +   + ELE +LA+L+  L+K +E+L +  +  R  +   EE ++QL  +  +LEE +++
Sbjct: 665  QKRELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRE 724

Query: 86   LLEITTSEDTRVEELRQLSQDRDKAWQSELDAVQKQQSMDSAALGSAMNEIQRLKFQLEK 145
            L  +    +     L +L ++ ++  + EL+ +Q++       L S    + +LK ++E+
Sbjct: 725  LAALEEELEQLQSRLEELEEELEEL-EEELEELQERLEELEEELESLEEALAKLKEEIEE 783

Query: 146  VAESEAAQTKHAESAYAEMQNLRIELTETLSLVEKLKNELSYCKESESQALEDVRKSQMQ 205
            + E   A  +       E++ L  EL E    ++ L+ EL   ++   +  +++ + + +
Sbjct: 784  LEEKRQALQE-------ELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEE 836

Query: 206  LETANANLEMLRSDGIKATEAYNTLSLELELSKARVKSLEELVSKLQNDLLNSSNKLAES 265
            +E     L+ L  +  +  +    L  ELE  +A  + LE+ + +L+ +      +L E 
Sbjct: 837  IEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRE- 895

Query: 266  MGDVHLSQKNGENEEIDKLKGELDLARNELRQLRSALDASETRYQEEYIQSTLQIRSAYE 325
                  S+     EEI+KL+  L+    +L +L   L   E   +EEY  +         
Sbjct: 896  ----LESELAELKEEIEKLRERLEELEAKLERLEVELPELEEELEEEYEDT--LETELER 949

Query: 326  QLERAKSESSQREA---DLETELKNVKAQIEELRANLLDKETELQSISEENEGLNLKIK 381
            ++ER + E             E + V+ + EEL++   D E   + + E  E L+ + +
Sbjct: 950  EIERLEEEIEALGPVNLRAIEEYEEVEERYEELKSQREDLEEAKEKLLEVIEELDKEKR 1008

Length = 1163

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 59.3 bits (144), Expect = 4e-09
 Identities = 69/294 (23%), Positives = 132/294 (44%), Gaps = 13/294 (4%)

Query: 30  VSELESQLAQLQEDLKKA---KEQLNASDSWKRRAQ-QEAEEAKKQLSAMSARLEESQQQ 85
           ++ELE QL  L+   +KA   KE        +        EE +++L  +   L+E++++
Sbjct: 195 LNELERQLKSLERQAEKAERYKELKAELRELELALLVLRLEELREELEELQEELKEAEEE 254

Query: 86  LLEITTSEDTRVEELRQLSQDRDKAWQSELDAVQKQQSMDSAALGSAMNEIQRLKFQLEK 145
           L E+T       E+L +L +      + E++ +QK+    +  +     + Q L+ +L  
Sbjct: 255 LEELTAELQELEEKLEEL-RLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLAN 313

Query: 146 VAESEAAQTKHAESAYAEMQNLRIELTETLSLVEKLKNELSYCKESESQALEDVRKSQMQ 205
           +           E+   E+++   EL E L+ +E+   EL    ES    LE++     +
Sbjct: 314 LERQLEE----LEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEE 369

Query: 206 LETAN----ANLEMLRSDGIKATEAYNTLSLELELSKARVKSLEELVSKLQNDLLNSSNK 261
           LE+        LE LRS   +      +L+ E+E  +AR++ LE+   +LQ ++     K
Sbjct: 370 LESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKK 429

Query: 262 LAESMGDVHLSQKNGENEEIDKLKGELDLARNELRQLRSALDASETRYQEEYIQ 315
           L E+      ++     EE+++L+ EL+     L +LR  L+ +E        +
Sbjct: 430 LEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERE 483

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 58.6 bits (142), Expect = 6e-09
 Identities = 66/306 (21%), Positives = 136/306 (44%), Gaps = 7/306 (2%)

Query: 60  RAQQEAEEAKKQLSAMSARLEESQQQLLEITTSEDTRVEELRQLSQDRDKAWQSELDAVQ 119
           R ++ +   K++L  +   L E + QL ++     +   ELR L    ++  + +L+ ++
Sbjct: 657 RNKRSSLAQKRELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEEL-RRQLEELE 715

Query: 120 KQQSMDSAALGSAMNEIQRLKFQLEKVAESEAAQTKHAESAYAEMQNLRIELTETLSLVE 179
           +Q       L +   E+++L+ +LE++ E      +  E     ++ L  EL      + 
Sbjct: 716 RQLEELKRELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALA 775

Query: 180 KLKNELSYCKESESQALEDVRKSQMQLETANANLEMLRSDGIKATEAYNTLSLELELSKA 239
           KLK E+   +E      E++ + + +LE A   L+ L  +     +    L  E+E  + 
Sbjct: 776 KLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEE 835

Query: 240 RVKSLEELVSKLQNDLLNSSNKLAESMG--DVHLSQKNGENEEIDKLKGELDLARNELRQ 297
            ++ LEE + +L+ +L     +L E     +   ++K    +E+ +L+ E +    ELR+
Sbjct: 836 EIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRE 895

Query: 298 LRSALDASETRYQE-EYIQSTLQIRSAYEQLERAKSE---SSQREADLETELKNVKAQIE 353
           L S L   +   ++       L+ +    ++E  + E     + E  LETEL+    ++E
Sbjct: 896 LESELAELKEEIEKLRERLEELEAKLERLEVELPELEEELEEEYEDTLETELEREIERLE 955

Query: 354 ELRANL 359
           E    L
Sbjct: 956 EEIEAL 961

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 55.5 bits (134), Expect = 6e-08
 Identities = 67/287 (23%), Positives = 131/287 (45%), Gaps = 7/287 (2%)

Query: 167 LRIELTETLSLVEKLKNELSYCKESESQALEDVRKSQMQLETANANLEMLRSDGIKATEA 226
           L  +L E    +E+L+ ELS  +E   +  E++ +++ ++E   + LE LR +  +  E 
Sbjct: 230 LLAKLKELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEE 289

Query: 227 YNTLSLELELSKARVKSLEELVSKLQNDLLNSSNKLAESMGDV-----HLSQKNGENEEI 281
              L  E+E  +  +  L E + +L+N+L     +L E    +      L ++    EE+
Sbjct: 290 LLELKEEIEELEGEISLLRERLEELENELEELEERLEELKEKIEALKEELEERETLLEEL 349

Query: 282 DKLKGELDLARNELRQLRSALDASETRYQEEYIQSTLQIRSAYEQLERAKSESSQREADL 341
           ++L  EL+ A+ EL +  SAL        E   +   ++ +   ++     E  +    L
Sbjct: 350 EQLLAELEEAKEELEEKLSALLEELEELFEALREELAELEAELAEIRNELEELKREIESL 409

Query: 342 ETELKNVKAQIEELRANLLDKETELQSISEENEGLNLKIKTNESNQRDSKLAVELNKLEA 401
           E  L+ +  ++E+L+  L + E EL+ +  E E LN +++  E    + +  ++  +LE 
Sbjct: 410 EERLERLSERLEDLKEELKELEAELEELQTELEELNEELEELEEQLEELRDRLK--ELER 467

Query: 402 EVVEFKASILDKETELMSLTEQNGMLKMEIENREMERNKVNDEAISL 448
           E+ E +  +   E EL SL  +   L+ E    +  R  +      L
Sbjct: 468 ELAELQEELQRLEKELSSLEARLDRLEAEQRASQGVRAVLEALESGL 514

Length = 1163

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 55.1 bits (133), Expect = 9e-08
 Identities = 50/267 (18%), Positives = 110/267 (41%), Gaps = 18/267 (6%)

Query: 252 QNDLLNSSNKLAESMGDVHLSQKNGENEEIDKLKGELDLARNELRQLRSALDASETRYQE 311
           + ++     K+ E    +   +K      + +L+ EL+    EL QLR  L+    +   
Sbjct: 676 RREIEELEEKIEELEEKIAELEK-----ALAELRKELEELEEELEQLRKELEELSRQISA 730

Query: 312 EYIQSTLQIRSAYEQLERAKSESSQREADLETELKNVKAQIEELRANLLDKETELQSISE 371
                  ++ +  EQLE   ++ S+   +LE E++ ++ ++EE    L + E E++ +  
Sbjct: 731 LRKD-LARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEA 789

Query: 372 ENEGLNLKIKTNESNQRDSKLAVELNKLEAEVVEFKASILDKETELMSLTEQNGMLKMEI 431
           + E L  ++K              L++L AE+        +    L SL  +    +  +
Sbjct: 790 QIEQLKEELKALRE---------ALDELRAELTLLNEEAANLRERLESLERRIAATERRL 840

Query: 432 ENREMERNKVNDEAISLA---EAARVAEREALMKVGFLTEEADKSSRRAARVTEQLDAAQ 488
           E+ E +  +++++  SLA   E       E   ++  L  E        A +  +L+   
Sbjct: 841 EDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELS 900

Query: 489 AASTEMEAELRKLKVQSDQWRKAAEAA 515
               E+E++  +L+ + ++ R+     
Sbjct: 901 EELRELESKRSELRRELEELREKLAQL 927

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 54.7 bits (132), Expect = 1e-07
 Identities = 63/256 (24%), Positives = 120/256 (46%), Gaps = 9/256 (3%)

Query: 272 SQKNGENEEIDKLKGELDLARNELRQLRSALDASETRYQEEYIQSTLQIRSAYEQLERAK 331
            +     EE+ +L+ +L+    EL+ L++ L + E   +E   Q   ++    E+L+R  
Sbjct: 667 RELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLE-ELERQLEELKREL 725

Query: 332 SESSQREADLETELKNVKAQIEELRANLLDKETELQSISEENEGL-----NLKIKTNESN 386
           +   +    L++ L+ ++ ++EEL   L + +  L+ + EE E L      LK +  E  
Sbjct: 726 AALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEIEELE 785

Query: 387 QRDSKLAVELNKLEAEVVEFKASILDKETELMSLTEQNGMLKMEIENREMERNKVNDEAI 446
           ++   L  EL +LE E+ E +  +   E EL SL ++   L+ EIE  E E  ++ ++  
Sbjct: 786 EKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEELEEKLD 845

Query: 447 SLAEAARVAE---REALMKVGFLTEEADKSSRRAARVTEQLDAAQAASTEMEAELRKLKV 503
            L E     E    E   ++  L  E ++       + E+ +  +    E+E+EL +LK 
Sbjct: 846 ELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAELKE 905

Query: 504 QSDQWRKAAEAATAML 519
           + ++ R+  E   A L
Sbjct: 906 EIEKLRERLEELEAKL 921

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 54.3 bits (131), Expect = 1e-07
 Identities = 62/283 (21%), Positives = 124/283 (43%), Gaps = 8/283 (2%)

Query: 220 GIKATEAYNTLSLELELSKARVKSLEELVSKLQNDLLNSSNKLAESMGDVHLSQKNGENE 279
            +        L  EL   +A+++ LEE +  L+N+L +  + L E    +   ++  + E
Sbjct: 662 SLAQKRELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELER--QLE 719

Query: 280 EIDKLKGELDLARNELRQLRSALDASETRYQEEYIQSTLQIRSAYEQLERAKSESSQREA 339
           E+ +    L+    +L+     L+      +EE  +   ++    E+LE  +       A
Sbjct: 720 ELKRELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEA----LA 775

Query: 340 DLETELKNVKAQIEELRANLLDKETELQSISEENEGLNLKIKTNESNQRDSKLAVELNKL 399
            L+ E++ ++ + + L+  L + E EL+      + L  ++++ E  QR  +L  E+ +L
Sbjct: 776 KLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLE--QRRERLEQEIEEL 833

Query: 400 EAEVVEFKASILDKETELMSLTEQNGMLKMEIENREMERNKVNDEAISLAEAARVAEREA 459
           E E+ E +  + + E EL  L ++   LK E+E  E E+ ++ DE   L E     E E 
Sbjct: 834 EEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEEL 893

Query: 460 LMKVGFLTEEADKSSRRAARVTEQLDAAQAASTEMEAELRKLK 502
                 L E  ++  +   R+ E     +    E+     +L+
Sbjct: 894 RELESELAELKEEIEKLRERLEELEAKLERLEVELPELEEELE 936

Length = 1163

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 54.3 bits (131), Expect = 1e-07
 Identities = 67/338 (19%), Positives = 142/338 (42%), Gaps = 33/338 (9%)

Query: 23  EKQRPSRVSELESQLAQLQEDLKKAKEQLNASDSWKRRAQQEAEEAKKQLSAMSARLEES 82
            +          ++L +L+E L+  K +L++  S  RR +   +E  ++LS  S ++ E 
Sbjct: 662 PRGGILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEI 721

Query: 83  QQQLLEITTSEDTRVEELRQLSQDRDKAWQSELDAVQKQQSMDSAALGSAMNEIQRLKFQ 142
           ++++ ++   E+   E L +L +D     Q   +   + + +++         I+ L+  
Sbjct: 722 EKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEA--------RIEELEED 773

Query: 143 LEKVAESEAA-QTKHAESAYAEMQNLRIELTETLSLVEKLKNELSYCKESESQALEDVRK 201
           L K+ E+    + + + S   E+Q    +L E +S +E    E+        Q L  +  
Sbjct: 774 LHKLEEALNDLEARLSHSRIPEIQAELSKLEEEVSRIEARLREI-------EQKLNRLTL 826

Query: 202 SQMQLETANANLEMLRSDGIKATEAYNTLSLELELSKARVKSLEELVSKLQNDLLNSSNK 261
            +  LE     L+  R D     E   ++  E+E    + + LEE + +L+  L      
Sbjct: 827 EKEYLEKEIQELQEQRID---LKEQIKSIEKEIENLNGKKEELEEELEELEAAL----RD 879

Query: 262 LAESMGDVHLSQKNGENEEIDKLKGELDLARNELRQLRSALDASETRY--QEEYIQSTLQ 319
           L   +GD+         +E D+L+ +L     ++ +L + ++    R    +  +++  +
Sbjct: 880 LESRLGDL--------KKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEE 931

Query: 320 IRSAYEQLERAKSESSQREADLETELKNVKAQIEELRA 357
             S  E  +    E  + E  LE     ++   EE+RA
Sbjct: 932 ELSEIEDPKGEDEEIPEEELSLEDVQAELQRVEEEIRA 969

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 53.1 bits (128), Expect = 3e-07
 Identities = 44/258 (17%), Positives = 108/258 (41%), Gaps = 13/258 (5%)

Query: 28  SRVSELESQLAQLQEDLKKAKEQLNASDSWKRRAQQEAEEAKKQLSAMSARLEESQQQLL 87
             + EL ++L +L+E L++ + +++  +      Q+E      ++S +  + +  +++L 
Sbjct: 253 EELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLA 312

Query: 88  EITTSEDTRVEELRQLSQDRDKAWQSELDAVQKQQSMDSAALGSAMNEIQRLKFQLEKVA 147
            +    +    +L +L    D+    EL  ++++       L     E++ L+ +LE++ 
Sbjct: 313 NLERQLEELEAQLEELESKLDEL-AEELAELEEK-------LEELKEELESLEAELEELE 364

Query: 148 ESEAAQTKHAESAYAEMQNLRIELTETLSLVEKLKNELSYCKESESQALEDVRKSQMQLE 207
                     E    +++ LR ++ +    +  L NE+   +    +  +   + Q ++E
Sbjct: 365 AELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIE 424

Query: 208 TANANLEMLRSDGIKAT-----EAYNTLSLELELSKARVKSLEELVSKLQNDLLNSSNKL 262
                LE      ++A      E    L  ELE  +  ++ L E + + +  L  +  +L
Sbjct: 425 ELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAEREL 484

Query: 263 AESMGDVHLSQKNGENEE 280
           A+    +   ++  EN E
Sbjct: 485 AQLQARLDSLERLQENLE 502

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 53.5 bits (129), Expect = 3e-07
 Identities = 70/350 (20%), Positives = 146/350 (41%), Gaps = 32/350 (9%)

Query: 114 ELDAVQKQQSMDSAALGSAMNEIQRLKFQLEKVAESEAAQTKHAESAY----AEMQNLRI 169
           EL+ V++        +     +++RL+ + EK    +A   +  E        E + L  
Sbjct: 178 ELEEVEENIERLDLIIDEKRQQLERLRREREKAERYQALLKEKREYEGYELLKEKEALER 237

Query: 170 ELTETLSLVEKLKNELSYCKESESQALEDVRKSQMQLETANANLEMLRSDGIKATEAYNT 229
           +       +  L+ EL    E  S+  + + + +  LE  N  ++ L        E    
Sbjct: 238 QKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGE------EEQLR 291

Query: 230 LSLELELSKARVKSLEELVSKLQNDLLNSSNKLAESMGDVHLSQKNGENEEIDKLKGELD 289
           +  ++   +A + SLE  +++ + +L ++  +LA+   ++          EI++L+ E++
Sbjct: 292 VKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLL-----AEIEELEREIE 346

Query: 290 LARNELRQLRSALDASETRYQEEYIQSTLQIRSAYEQLERAKSESSQREADLETELKNVK 349
             R    +L       +   ++        +R+  E++++  +E+     D   +L+ +K
Sbjct: 347 EERKRRDKLTEEYAELKEELED--------LRAELEEVDKEFAETRDELKDYREKLEKLK 398

Query: 350 AQIEELRANLLDKETELQSISEENEGLNLKIKTNESNQRDSKLAVELNKLEAEVVEFKAS 409
            +I EL+  L   + ELQ +SEE   LN  I   E+         ++N+LE E  +    
Sbjct: 399 REINELKRELDRLQEELQRLSEELADLNAAIAGIEA---------KINELEEEKEDKALE 449

Query: 410 ILDKETELMSLTEQNGMLKMEIENREMERNKVNDEAISLAEAARVAEREA 459
           I  +E +L  L       + E+ + + E ++V  E   L      AE +A
Sbjct: 450 IKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQA 499

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 53.2 bits (128), Expect = 4e-07
 Identities = 57/284 (20%), Positives = 113/284 (39%), Gaps = 12/284 (4%)

Query: 29  RVSELESQLAQLQEDLKKAKEQLNASDSWKRRAQQEAEEAKKQLSAMSARLEESQQQLLE 88
           ++ EL  +L +L+E+L + +E+L         A++E EE K +L  +   LEE Q++LLE
Sbjct: 233 KLKELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELLE 292

Query: 89  ITTSEDTRVEELRQLSQDRDKAWQSELDA----------VQKQQSMDSAALGSAMNEIQR 138
           +    +    E+  L +  ++      +           ++  +              Q 
Sbjct: 293 LKEEIEELEGEISLLRERLEELENELEELEERLEELKEKIEALKEELEERETLLEELEQL 352

Query: 139 LKFQLEKVAESEAAQTKHAESAYAEMQNLRIELTETLSLVEKLKNELSYCKESESQALED 198
           L    E   E E   +   E      + LR EL E  + + +++NEL   K       E 
Sbjct: 353 LAELEEAKEELEEKLSALLEELEELFEALREELAELEAELAEIRNELEELKREIESLEER 412

Query: 199 VRKSQMQLETANANLEMLRSDGIKATEAYNTLSLELELSKARVKSLEELVSKLQNDLLNS 258
           + +   +LE     L+ L ++  +       L+ ELE  + +++ L + + +L+ +L  +
Sbjct: 413 LERLSERLEDLKEELKELEAELEELQTELEELNEELEELEEQLEELRDRLKELEREL--A 470

Query: 259 SNKLAESMGDVHLSQKNGENEEIDKLKGELDLARNELRQLRSAL 302
             +      +  LS      + ++  +      R  L  L S L
Sbjct: 471 ELQEELQRLEKELSSLEARLDRLEAEQRASQGVRAVLEALESGL 514

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 52.8 bits (127), Expect = 4e-07
 Identities = 78/337 (23%), Positives = 147/337 (43%), Gaps = 35/337 (10%)

Query: 32  ELESQLAQLQEDLKKA------KEQLNASDSW-----KRRAQQEAEEAKKQLSAMSARLE 80
           ELE QL +L+   +KA      K +L   +        +  ++E EE +++LS +   LE
Sbjct: 197 ELEKQLEKLERQAEKAERYQELKAELRELELALLLAKLKELRKELEELEEELSRLEEELE 256

Query: 81  ESQQQLLEITTSEDTRVEELRQLSQDRDKAWQSELDAVQKQQSMDSAALGSAMNEIQRLK 140
           E Q++L E     +  +EEL+   ++  +    EL+ +Q++       +     EI  L+
Sbjct: 257 ELQEELEEA----EKEIEELKSELEELRE----ELEELQEELLELKEEIEELEGEISLLR 308

Query: 141 FQLEKVAESEAAQTKHAESAYAEMQNLRIELTETLSLVEKLKNELSYCKESESQALEDVR 200
            +LE++        +  E    +++ L+ EL E  +L+E+L+  L+  +E++ +  E + 
Sbjct: 309 ERLEELENELEELEERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLS 368

Query: 201 KSQMQLETANANLEMLRSDGIKATEAYNTLSLELELSKARVKSLEELVSKLQNDLLNSSN 260
               +LE        LR +  +       +  ELE  K  ++SLEE + +L   L +   
Sbjct: 369 ALLEELEELFEA---LREELAELEAELAEIRNELEELKREIESLEERLERLSERLEDLKE 425

Query: 261 KLAESMGDVHLSQKNGENEEIDKLKGELDLARNELRQLRSALDASETRYQEEYIQSTLQI 320
           +L E       ++      E+++L  EL+    +L +LR  L   E    E        +
Sbjct: 426 ELKEL-----EAELEELQTELEELNEELEELEEQLEELRDRLKELERELAE--------L 472

Query: 321 RSAYEQLERAKSESSQREADLETELKNVKAQIEELRA 357
           +   ++LE+  S    R   LE E +  +     L A
Sbjct: 473 QEELQRLEKELSSLEARLDRLEAEQRASQGVRAVLEA 509

Length = 1163

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 52.4 bits (126), Expect = 6e-07
 Identities = 115/530 (21%), Positives = 213/530 (40%), Gaps = 62/530 (11%)

Query: 21  ALEKQRPSRVSELESQLAQLQEDLKKAKEQLNASDSWKRRAQQEAEEAKKQLSAMSARLE 80
            LE  R S+V++LE Q+A L  ++++ + +L   +  + R QQE EE  K+L    A L+
Sbjct: 380 QLETLR-SKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLE--EAELK 436

Query: 81  ESQQQLLEITTSEDTRVEELRQLSQDRDKAWQSELDAVQKQQSMDSAALGSAMNEIQRLK 140
           E Q +L E+    +   EEL +L        +  L+ ++++      AL +A  E+ +L+
Sbjct: 437 ELQAELEELEEELEELQEELERL--------EEALEELREELEEAEQALDAAERELAQLQ 488

Query: 141 FQLEKVAESEAAQTKHAESAYAEMQNLRIELTETLSLVEKLKNELSYCKESESQALEDVR 200
            +L+ +   +      +E   A ++N +  L+  L ++ +L +      E    A+E   
Sbjct: 489 ARLDSLERLQENLEGFSEGVKALLKN-QSGLSGILGVLSELIS----VDEGYEAAIEAAL 543

Query: 201 KSQMQ------LETANANLEMLRS-----------DGIKATEAYNTLSLELELSKARVKS 243
             ++Q      L  A   +  L+            D IK TE        L+  +  +  
Sbjct: 544 GGRLQAVVVENLNAAKKAIAFLKQNELGRVTFLPLDSIKGTEIQGNDREILKNIEGFLGV 603

Query: 244 LEELV------SKLQNDLLNSSNKLAESMGDVHLSQKNGENEEIDKLKGELDLARNELRQ 297
            ++LV       K  + LL     + +    + L++K      I  L G+L         
Sbjct: 604 AKDLVKFDPKLRKALSYLLGGVLVVDDLDNALELAKKLRPGYRIVTLDGDLVRPG----- 658

Query: 298 LRSALDASETRYQEEYIQSTLQIRSAYEQLERAKSESSQREADLETELKNVKAQIEELRA 357
                    T    +   S L+ R   E+LE    E  ++ A+LE  L  ++ ++EEL  
Sbjct: 659 ------GVITGGSAKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEE 712

Query: 358 NLLDKETELQSISEENEGLNLKIKTNESNQRDSKLAVELNKLEAEVVEFKASILDKETEL 417
            L     EL+ +S +   L   +   E+     +L   + +L  E+ E +A I + E  L
Sbjct: 713 ELEQLRKELEELSRQISALRKDLARLEAEVE--QLEERIAQLSKELTELEAEIEELEERL 770

Query: 418 MSLTEQNGMLKMEIENREMERNKVNDEAISLAEAARVAERE----------ALMKVGFLT 467
               E+    + EIE  E +  ++ +E  +L EA      E             ++  L 
Sbjct: 771 EEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLE 830

Query: 468 EEADKSSRRAARVTEQLDAAQAASTEMEAELRKLKVQSDQWRKAAEAATA 517
                + RR   + EQ++        + AE+ +L+   ++     EA   
Sbjct: 831 RRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLN 880

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 52.4 bits (126), Expect = 6e-07
 Identities = 71/407 (17%), Positives = 158/407 (38%), Gaps = 51/407 (12%)

Query: 26  RPSRVSELESQLAQ-----------LQEDLKK-----AKEQ---------LNASDSWKRR 60
           +  R+SE+   LA            LQ D+         E+         +   D  K +
Sbjct: 115 QRVRLSEIHDFLAAAGIYPEGYNVVLQGDVTDFISMSPVERRKIIDEIAGVAEFDRKKEK 174

Query: 61  AQQEAEEAKKQLSAMSARLEESQQQL--LEITTSEDTRVEELRQLSQDRD-KAWQSELDA 117
           A +E EE ++ +  +   ++E +QQL  L     +  R + L +  ++ +      E +A
Sbjct: 175 ALEELEEVEENIERLDLIIDEKRQQLERLRREREKAERYQALLKEKREYEGYELLKEKEA 234

Query: 118 VQKQQSMDSAALGSAMNEIQRLKFQL-EKVAESEAAQTKHAESAYAEMQNLRIELTETLS 176
           +++Q+      L S   E+++L  ++ E     E  +    E           E      
Sbjct: 235 LERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKE 294

Query: 177 LVEKLKNELSYCKESESQALEDVRKSQMQLETANANLEMLRSDGIKATEAYNTLSLELEL 236
            + +L+ E++  + S ++   ++  ++ +L    A ++ L ++  +            + 
Sbjct: 295 KIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDK 354

Query: 237 SKARVKSLEELVSKLQNDLLNSSNKLAESMGDVHLSQKNGENEEIDKLKGELDLARNELR 296
                  L+E +  L+ +L     + AE+             +E+   + +L+  + E+ 
Sbjct: 355 LTEEYAELKEELEDLRAELEEVDKEFAETR------------DELKDYREKLEKLKREIN 402

Query: 297 QLRSALDASETRYQEEYIQSTLQIRSAYEQLERAKSESSQREADLETELKNVKAQIEELR 356
           +L+  LD    R QEE  + + ++      +   +     +  +LE E ++   +I++  
Sbjct: 403 ELKRELD----RLQEELQRLSEELADLNAAIAGIE----AKINELEEEKEDKALEIKKQE 454

Query: 357 ANLLDKETELQSISEENEGLNLKIKTNESNQRDSKLAVELNKLEAEV 403
             L  ++        E E  +LK + +   +  SKL  EL + EA+ 
Sbjct: 455 WKL--EQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQA 499

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 51.7 bits (124), Expect = 9e-07
 Identities = 85/401 (21%), Positives = 158/401 (39%), Gaps = 32/401 (7%)

Query: 21  ALEKQRPSRVSELESQLAQLQEDLKKAKEQLNASDSWKRRAQQEAEEAKKQLSAMSARLE 80
            L K    R+ ELE +L +L+++L+KA E+L   +   +  ++E  E    L  +   LE
Sbjct: 354 ELAKLLEERLKELEERLEELEKELEKALERLKQLEEAIQELKEELAELSAALEEIQEELE 413

Query: 81  ESQQQLLEITTSEDTRVEELRQLSQDRDKAWQSELDAVQKQQSMDSAAL------GSAMN 134
           E +++L E+    +   EE+++L +  ++    EL   +   + +   +           
Sbjct: 414 ELEKELEELERELEELEEEIKKLEEQINQLESKELMIAELAGAGEKCPVCGQELPEEHEK 473

Query: 135 EIQRLKFQLEKVAESEAAQTKHAESAYAEMQNLRIELTETLSLVEKLKNELSYCKESESQ 194
           E+  L     +  E E ++ K       E++ L  EL E    + +L       KE   +
Sbjct: 474 ELLELYELELEELEEELSREKEEAELREEIEELEKELRELEEELIELLELEEALKEELEE 533

Query: 195 ALEDVRKSQMQLETANANLEMLRSDGIKATEAYNTLSLELELSKARVKSLEELVSKLQND 254
            LE +     +LE     L+               L  EL   + R++ L+EL+ +L   
Sbjct: 534 KLEKLENLLEELEELKEKLQ------------LQQLKEELRQLEDRLQELKELLEEL-RL 580

Query: 255 LLNSSNKLAESMGDVHLSQKNGENEEIDKLKGELDLARNELRQLRSALDASETRYQEEYI 314
           L     +L E              E + +LK +L      L QL   L + E    E  +
Sbjct: 581 LRTRKEELEE------------LRERLKELKKKLKELEERLSQLEELLQSLELSEAENEL 628

Query: 315 QSTLQ-IRSAYEQLERAKSESSQREADLETELKNVKAQIEELRANLLDKETELQSISEEN 373
           +   + + S  E+L          +A LE   + V+    E+R  L   E E Q   +  
Sbjct: 629 EEAEEELESELEKLNLQAELEELLQAALEELEEKVEELEAEIRRELQRIENEEQLEEKLE 688

Query: 374 EGLNLKIKTNESNQRDSKLAVELNKLEAEVVEFKASILDKE 414
           E   L+ +  +  +   +L  +L ++E  + E ++   + E
Sbjct: 689 ELEQLEEELEQLREELEELLKKLGEIEQLIEELESRKAELE 729

Length = 908

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 51.2 bits (123), Expect = 1e-06
 Identities = 56/257 (21%), Positives = 109/257 (42%), Gaps = 14/257 (5%)

Query: 278 NEEIDKLKGELDLARNELRQLRSALDASETRYQEEYIQSTLQIRSAYEQLERAKSESSQR 337
            E ++ LK EL   ++ELR++ + LD       +   +   +I    EQLE+ + +  +R
Sbjct: 680 RERLEGLKRELSSLQSELRRIENRLDELSQELSDAS-RKIGEIEKEIEQLEQEEEKLKER 738

Query: 338 EADLETELKNVKAQIEELRANLLDKETELQSISEENEGLNLKIKTNESNQRDSKLAV--- 394
             +LE +L +++ +IE +++ L + E  ++ + E+   L   +   E+    S++     
Sbjct: 739 LEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSRIPEIQA 798

Query: 395 ELNKLEAEVVEFKASILDKETELMSLTEQNGMLKMEIEN----------REMERNKVNDE 444
           EL+KLE EV   +A + + E +L  LT +   L+ EI+           +     K  + 
Sbjct: 799 ELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIEN 858

Query: 445 AISLAEAARVAEREALMKVGFLTEEADKSSRRAARVTEQLDAAQAASTEMEAELRKLKVQ 504
                E       E    +  L        +    +  QL   +    E+EA++ K + +
Sbjct: 859 LNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKR 918

Query: 505 SDQWRKAAEAATAMLSA 521
             + +   EA    LS 
Sbjct: 919 LSELKAKLEALEEELSE 935

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 50.1 bits (120), Expect = 3e-06
 Identities = 51/300 (17%), Positives = 123/300 (41%), Gaps = 18/300 (6%)

Query: 126 SAALGSAMNEIQRLKFQLEKVAESEAAQTKHAESAYAEMQNLRIELTETLSLVEKLKNEL 185
             AL     E++ L+ +LE++ +     ++   +   ++  L  E+ +    + +L  EL
Sbjct: 697 EKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKEL 756

Query: 186 SYCKESESQALEDVRKSQMQLETANANLEMLRSDGIKATEAYNTLSLELELSKARVKSLE 245
           +  +    +  E + +++ +L  A A +E L +           L  EL+  +  +  L 
Sbjct: 757 TELEAEIEELEERLEEAEEELAEAEAEIEELEAQ-------IEQLKEELKALREALDELR 809

Query: 246 ELVSKLQNDLLNSSNKLAESMGDVHLSQKNGEN--EEIDKLKGELDLARNELRQLRSALD 303
             ++ L  +  N   +L      +  +++  E+  E+I++L  +++    E+ +L   ++
Sbjct: 810 AELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIE 869

Query: 304 ASETRYQEEYIQSTLQIRSAYEQLERAKSESSQREADLETELKNVKAQIEELRANLLDKE 363
             E+  +    +           LE A +       +L  EL+ ++++  ELR  L +  
Sbjct: 870 ELESELEALLNE--------RASLEEALALLRSELEELSEELRELESKRSELRRELEELR 921

Query: 364 TELQSISEENEGLNLKIKTNESNQRDSKLAVELNKLEAEVVEFKASILDKETELMSLTEQ 423
            +L  +    EGL ++I   +      + ++ L + EA   + +    +    L  L  +
Sbjct: 922 EKLAQLELRLEGLEVRIDNLQERLS-EEYSLTLEEAEALENKIEDDEEEARRRLKRLENK 980

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 49.7 bits (119), Expect = 4e-06
 Identities = 54/246 (21%), Positives = 110/246 (44%), Gaps = 10/246 (4%)

Query: 197 EDVRKSQMQLETANANLEMLRSDGIKATEAYNTLSLELELSKARVKSLEELVSKLQNDLL 256
            ++++ + +LE     L  L+S+  +     + LS EL  +  ++  +E+ + +L+ +  
Sbjct: 674 AELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEE 733

Query: 257 NSSNKLAESMGDVHLSQKNGEN--EEIDKLKGELDLARNELRQLRSALDASETRYQEEYI 314
               +L E   D+   ++  EN   E+ +L+  ++    +L +L  AL+  E R     I
Sbjct: 734 KLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSRI 793

Query: 315 QSTLQIRSAYEQLERAKSESSQREADLETELKNV---KAQIEELRANLLDK--ETELQSI 369
               +I++   +LE   S    R  ++E +L  +   K  +E+    L ++  + + Q  
Sbjct: 794 P---EIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIK 850

Query: 370 SEENEGLNLKIKTNESNQRDSKLAVELNKLEAEVVEFKASILDKETELMSLTEQNGMLKM 429
           S E E  NL  K  E  +   +L   L  LE+ + + K    + E +L  L  +   L+ 
Sbjct: 851 SIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEA 910

Query: 430 EIENRE 435
           +IE + 
Sbjct: 911 QIEKKR 916

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 48.9 bits (117), Expect = 7e-06
 Identities = 63/308 (20%), Positives = 138/308 (44%), Gaps = 28/308 (9%)

Query: 10   KVVERKSPRSPALEKQRPSRVSELESQLAQLQEDLKKAKEQLNASDSWKRRAQQEAEEAK 69
              +E +  +      Q    ++ELE+++ +L+E L++A+E+L  +++     + + E+ K
Sbjct: 736  ARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLK 795

Query: 70   KQLSAMSARLEESQQQLLEITTSEDTRVEELRQLSQDRDKAWQSELDAVQKQ---QSMDS 126
            ++L A+   L+E + +L      E   + E  +  + R  A +  L+ +++Q    S D 
Sbjct: 796  EELKALREALDELRAELTL-LNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDI 854

Query: 127  AALGSAMNEIQ----RLKFQLEKVAESEAAQTKHAESAYAEMQNLRIELTETLSLVEKLK 182
             +L + + E++     L+ +LE +    A+  +      +E++ L  EL E  S   +L+
Sbjct: 855  ESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELR 914

Query: 183  NELSYCKESESQALEDVRKSQMQLETANANLEMLRSDGIKATEAYNTLSLELELSKARVK 242
             EL   +E  +Q    +   +++++      E L  +           SL LE ++A   
Sbjct: 915  RELEELREKLAQLELRLEGLEVRIDN---LQERLSEEY----------SLTLEEAEALEN 961

Query: 243  SLEELVSKLQNDLLNSSNKLAESMGDVHLS------QKNGENEEIDKLKGELDLARNELR 296
             +E+   + +  L    NK+ E +G V+L+      +     + +   K +L  A+  L 
Sbjct: 962  KIEDDEEEARRRLKRLENKIKE-LGPVNLAAIEEYEELKERYDFLTAQKEDLTEAKETLE 1020

Query: 297  QLRSALDA 304
            +    +D 
Sbjct: 1021 EAIEEIDR 1028

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 48.1 bits (115), Expect = 1e-05
 Identities = 48/231 (20%), Positives = 101/231 (43%), Gaps = 22/231 (9%)

Query: 296 RQLRSALDASETRYQEEYIQ---STLQIRSAYEQLERAKS---ESSQREADLETELKNVK 349
           RQ   A    E + +   ++     L++    E+LE  +    E+ +   +L  EL+ ++
Sbjct: 207 RQAEKAERYKELKAELRELELALLVLRLEELREELEELQEELKEAEEELEELTAELQELE 266

Query: 350 AQIEELRANLLDKETELQSISEENEGLNLKIKTNESN-----QRDSKLAVELNKLEAEVV 404
            ++EELR  + + E E++ + +E   L  +I   E       +R + L  +L +LEA++ 
Sbjct: 267 EKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLE 326

Query: 405 EFKASILDKETELMSLTEQNGMLKMEIENREMERNKVNDEAISLAEAARVAEREALMKVG 464
           E ++ + +   EL  L E+   LK   E  E    ++        E       E   ++ 
Sbjct: 327 ELESKLDELAEELAELEEKLEELK---EELESLEAEL--------EELEAELEELESRLE 375

Query: 465 FLTEEADKSSRRAARVTEQLDAAQAASTEMEAELRKLKVQSDQWRKAAEAA 515
            L E+ +    + A++  Q+ +       +EA L +L+ + ++ ++  E  
Sbjct: 376 ELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEEL 426

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 47.8 bits (114), Expect = 1e-05
 Identities = 65/284 (22%), Positives = 130/284 (45%), Gaps = 18/284 (6%)

Query: 29  RVSELESQLAQLQEDLKKAKEQLNASDSWKRRAQQEAEEAKKQLSAMSARLEESQQQLLE 88
            ++ L ++L +L+++L++ +E+L+       R ++E EE +++L      +EE + +L E
Sbjct: 226 ELALLLAKLKELRKELEELEEELS-------RLEEELEELQEELEEAEKEIEELKSELEE 278

Query: 89  ITTSEDTRVEELRQLSQDRDKAWQSELDAVQKQQSMDSAALGSAMNEIQRLKFQLEKVAE 148
           +    +   EEL +L ++       EL+            L + + E++    +L++  E
Sbjct: 279 LREELEELQEELLELKEEI-----EELEGEISLLRERLEELENELEELEERLEELKEKIE 333

Query: 149 SEAAQTKHAESAYAEMQNLRIELTETLSLVEKLKNELSYCKESESQAL-EDVRKSQMQLE 207
           +   + +  E+   E++ L  EL E    +E+  + L    E   +AL E++ + + +L 
Sbjct: 334 ALKEELEERETLLEELEQLLAELEEAKEELEEKLSALLEELEELFEALREELAELEAELA 393

Query: 208 TANANLEMLRSDGIKATEAYNTLSLELELSKARVKSLEELVSKLQNDLLNSSNKLAESMG 267
                LE L+ +     E    LS  LE  K  +K LE  + +LQ +L   + +L E   
Sbjct: 394 EIRNELEELKREIESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEELEELE- 452

Query: 268 DVHLSQKNGENEEIDKLKGELDLARNELRQLRSALDASETRYQE 311
                Q     + + +L+ EL   + EL++L   L + E R   
Sbjct: 453 ----EQLEELRDRLKELERELAELQEELQRLEKELSSLEARLDR 492

Length = 1163

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 47.8 bits (114), Expect = 1e-05
 Identities = 86/453 (18%), Positives = 185/453 (40%), Gaps = 17/453 (3%)

Query: 59  RRAQQEAEEAKKQLSAMSARLEESQQQLLEITTSEDTRVEELRQLSQDRDKAWQSELDAV 118
              ++  +EAK ++  +  +L E  + + ++  + +  ++EL++L + +++  + EL+  
Sbjct: 174 ELLKEVIKEAKAKIEELEGQLSELLEDIEDLLEALEEELKELKKLEEIQEEQEEEELEQE 233

Query: 119 QKQQSMDSAALGSAMNEIQRLKFQLEKVAESEAAQTKHAESAYAEMQNLRIELTETLSLV 178
            +      A L      ++ LK +L ++   E    K  E    E++ L  EL E +  +
Sbjct: 234 IEALEERLAELEEEKERLEELKARLLEIESLELEALKIREEELRELERLLEELEEKIERL 293

Query: 179 EKLKNELSYCKESESQALEDVRKSQMQLETANANLEMLRSDGIKATEAYNTLSLELELSK 238
           E+L+ E+    E   + LE +R    +LE     L+ L     K  E    L  ELE   
Sbjct: 294 EELEREI----EELEEELEGLRALLEELEELLEKLKSLEERLEKLEEKLEKLESELEELA 349

Query: 239 ARVKSLEELVSKLQNDLLNSSNKLAESMGDVHLSQKNGENEEIDKLKGELDLARNELRQL 298
                L +L+ +     L    +  E   +  L +     E I +LK EL      L ++
Sbjct: 350 EEKNELAKLLEERLK-ELEERLEELEKELEKALERLKQLEEAIQELKEELAELSAALEEI 408

Query: 299 RSALDASETRYQEEYIQSTLQIRSAYEQLERAKSESSQREADLETELK--------NVKA 350
           +  L+  E    EE  +   ++    ++LE   ++   +E  +               + 
Sbjct: 409 QEELEELEKE-LEELERELEELEEEIKKLEEQINQLESKELMIAELAGAGEKCPVCGQEL 467

Query: 351 QIEELRANLLDKETELQSISEENEGLNLKIKTNESNQRDSKLAVELNKLEAEVVEFKASI 410
             E  +  L   E EL+ + EE      + +  E  +   K   EL +   E++E + ++
Sbjct: 468 PEEHEKELLELYELELEELEEELSREKEEAELREEIEELEKELRELEEELIELLELEEAL 527

Query: 411 LDKETELMSLTEQNGMLKMEIENREMERNKVNDEAISLAEAAR--VAEREALMKVGFLTE 468
            ++  E +    +N + ++E    +++  ++ +E   L +  +      E L  +    E
Sbjct: 528 KEELEEKLE-KLENLLEELEELKEKLQLQQLKEELRQLEDRLQELKELLEELRLLRTRKE 586

Query: 469 EADKSSRRAARVTEQLDAAQAASTEMEAELRKL 501
           E ++   R   + ++L   +   +++E  L+ L
Sbjct: 587 ELEELRERLKELKKKLKELEERLSQLEELLQSL 619

Length = 908

>gnl|CDD|236892 PRK11281, PRK11281, hypothetical protein; Provisional

 Score = 47.6 bits (114), Expect = 2e-05
 Identities = 74/337 (21%), Positives = 138/337 (40%), Gaps = 58/337 (17%)

Query: 31  SELESQLAQLQEDLKKAKEQLNASDSWKRRAQQEAEEAKKQLSAMSARLEESQQQLLEIT 90
             LE++   +Q+DL++    L+  D    R ++E E+ K+QL+   A+L ++Q +L  + 
Sbjct: 52  KLLEAEDKLVQQDLEQTLALLDKID----RQKEETEQLKQQLAQAPAKLRQAQAELEALK 107

Query: 91  TSEDTRV-EELRQLSQDRDKAWQSELDAVQKQQSMDSAALGSAMNEIQRLKFQLEKVAES 149
              D    E L  LS  +    +S L     Q       L    +++  L+ Q E+    
Sbjct: 108 DDNDEETRETLSTLSLRQ---LESRLAQTLDQLQNAQNDLAEYNSQLVSLQTQPER---- 160

Query: 150 EAAQTKHAESAYAEMQNLRIELTETLSLVEKLKNELSYCKESESQALEDVRKSQMQLETA 209
             AQ                 L      +++++N L   K     AL   ++  +Q E A
Sbjct: 161 --AQA---------------ALYANSQRLQQIRNLLKGGKVGGK-ALRPSQRVLLQAEQA 202

Query: 210 --NANLEMLRSDGIKATEAYNTLSLELELSKARVKSLEELVSKLQNDLLNSSNKLAES-- 265
             NA  ++ R      T+  + L  + +   AR++ LE  +  LQ + +NS   L  S  
Sbjct: 203 LLNAQNDLQRKSLEGNTQLQDLLQKQRDYLTARIQRLEHQLQLLQ-EAINSKR-LTLSEK 260

Query: 266 -MGDVHLSQKNGENEEIDKLKGELDLARNELRQ-LRSALDASETRYQEEYIQSTLQIRSA 323
            + +     +    +    +  EL++   +L Q L  A +   T  Q+      L++++ 
Sbjct: 261 TVQEAQSQDEAARIQANPLVAQELEINL-QLSQRLLKATEKLNTLTQQN-----LRVKN- 313

Query: 324 YEQLERAKSESSQREADLETELKNVKAQIEELRANLL 360
              L+R            ++E +N+K QI  L+ +LL
Sbjct: 314 --WLDRL----------TQSE-RNIKEQISVLKGSLL 337

Length = 1113

>gnl|CDD|226809 COG4372, COG4372, Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]

 Score = 46.9 bits (111), Expect = 2e-05
 Identities = 41/215 (19%), Positives = 96/215 (44%), Gaps = 14/215 (6%)

Query: 32  ELESQLAQLQEDLKKAKEQLNASDSWKRRAQQEAEEAKKQLSAMSARLEE------SQQQ 85
           ++  QL  L+ +L  A+ +  A+++ +  A+ E ++A+++  A+   L          QQ
Sbjct: 78  DIRPQLRALRTELGTAQGEKRAAETEREAARSELQKARQEREAVRQELAAARQNLAKAQQ 137

Query: 86  LLEITTSEDTRVE-ELRQLSQDRDKAWQSELDAVQKQQSMDSAALGSAMNEIQRLKFQLE 144
            L   T +   ++  L+ L++ R +  +++  ++Q  Q    A+     +++  LK +  
Sbjct: 138 ELARLTKQAQDLQTRLKTLAEQRRQL-EAQAQSLQASQKQLQASATQLKSQVLDLKLRSA 196

Query: 145 KVAESE---AAQTKHAESAYAEMQNLRIELTETLSLVEKLKNELSYCKESESQALEDVRK 201
           ++ +     A +   A++   E+        +T   +++   ++S   +  +   E +R+
Sbjct: 197 QIEQEAQNLATRANAAQARTEELARRAAAAQQTAQAIQQRDAQISQKAQQIAARAEQIRE 256

Query: 202 SQMQ---LETANANLEMLRSDGIKATEAYNTLSLE 233
            + Q   LETA A LE   +      +AY  L  +
Sbjct: 257 RERQLQRLETAQARLEQEVAQLEAYYQAYVRLRQQ 291

Length = 499

>gnl|CDD|236892 PRK11281, PRK11281, hypothetical protein; Provisional

 Score = 46.4 bits (111), Expect = 4e-05
 Identities = 56/245 (22%), Positives = 100/245 (40%), Gaps = 44/245 (17%)

Query: 30  VSELESQLAQLQEDLKKAKEQLNASDSWKRRAQQEAEEAKKQLSAMSARLEESQQQLLEI 89
           + +LES+LAQ  + L+ A+  L   +S     Q + E A+  L A S RL++ +  L   
Sbjct: 123 LRQLESRLAQTLDQLQNAQNDLAEYNSQLVSLQTQPERAQAALYANSQRLQQIRNLLKGG 182

Query: 90  TTSEDTRVEELRQLSQDRDKAWQSELDAVQKQQSMDSAALGSAMNEIQRLKFQLEKVAES 149
                      R L        Q+E   +  Q  +   +L     ++Q L   L+K  + 
Sbjct: 183 KVGGKALRPSQRVL-------LQAEQALLNAQNDLQRKSLEGN-TQLQDL---LQKQRDY 231

Query: 150 EAAQTKHAESAYAEMQNL----RIELTETLSLVEKLKNELSYCKESESQALEDVRKSQMQ 205
             A+ +  E     +Q      R+ L+E    V++ ++               ++ + + 
Sbjct: 232 LTARIQRLEHQLQLLQEAINSKRLTLSE--KTVQEAQS---------QDEAARIQANPLV 280

Query: 206 LETANANLEMLRSDG-IKATEAYNTLSLELELSKARVKS-----------LEELVSKLQN 253
            +    NL++  S   +KATE  NTL+ +  L   RVK+           ++E +S L+ 
Sbjct: 281 AQELEINLQL--SQRLLKATEKLNTLTQQ-NL---RVKNWLDRLTQSERNIKEQISVLKG 334

Query: 254 DLLNS 258
            LL S
Sbjct: 335 SLLLS 339

Length = 1113

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 46.3 bits (109), Expect = 5e-05
 Identities = 83/488 (17%), Positives = 192/488 (39%), Gaps = 25/488 (5%)

Query: 3    KTPKGSPKVVERKSPRSPALEKQRPSRVSELESQLAQLQEDLKKAKEQLNASDSWKRRAQ 62
            K    + K  E     + A + +  +   E E+   + +   KK +E    +D+ K++A+
Sbjct: 1329 KKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAE 1388

Query: 63   Q--EAEEAKKQLSAMSARLEESQQQLLEITTSEDTRVEELRQLSQDRDKAWQSELDAVQK 120
            +  +A+EAKK+      + +E     L+   +   + +E ++ ++++ KA +++  A + 
Sbjct: 1389 EKKKADEAKKKAEEDKKKADE-----LKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEA 1443

Query: 121  QQSMDSAALGSAMNEIQRLKFQLEKVAESEAAQTKHAESAYAEMQNLRIELTETLSLVEK 180
            +++ ++        + +  K + E+  +++ A+ K  E+  A+    + E         K
Sbjct: 1444 KKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAE-------EAK 1496

Query: 181  LKNELSYCKESESQALEDVRKSQMQLETANANLEMLRSDGIKATEAYNTLSLELELSKAR 240
             K + +       +  ++ +K++   +   A          +A +A      +       
Sbjct: 1497 KKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEE 1556

Query: 241  VKSLEELVSKLQNDLLNSSNKLAESMGDVHLSQKNGENEEIDKLKGELDLARNELRQLRS 300
            +K  EE     +         +A    +     +    EE+ KL  E    + E      
Sbjct: 1557 LKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAE-----E 1611

Query: 301  ALDASETRYQEEYIQSTLQIRSAYEQLERAKSESSQREADLETELKNVKAQIEELRANLL 360
            A  A E + + E ++   + +   EQL++ ++E  ++  +L+   +  K +  E      
Sbjct: 1612 AKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAE 1671

Query: 361  DKETELQSISEENEGLNLKIKTNESNQRDSKLAVELNKLEAEVVEFKASILDKETELMSL 420
            + + + +   +  E      +  +    ++K A EL K EAE  + KA  L K  E   +
Sbjct: 1672 EDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKK-KAEELKKAEEENKI 1730

Query: 421  TEQNGMLKMEIENREMERNKVNDE-----AISLAEAARVAEREALMKVGFLTEEADKSSR 475
              +    + E + ++ E  K ++E     A    E  + AE     K   + EE D+   
Sbjct: 1731 KAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDE 1790

Query: 476  RAARVTEQ 483
            +     ++
Sbjct: 1791 KRRMEVDK 1798

Length = 2084

>gnl|CDD|205692 pfam13514, AAA_27, AAA domain

 Score = 45.9 bits (109), Expect = 5e-05
 Identities = 81/435 (18%), Positives = 158/435 (36%), Gaps = 29/435 (6%)

Query: 32  ELESQLAQLQEDLKKAKEQLNASD-SWKRRAQQEAEEAKKQLSAMSARLEESQQQLLEIT 90
               +L QL+++L+  +  L A   +W  +AQ  A       + M   L E      ++ 
Sbjct: 565 AARRRLEQLEKELEVLELALAALREAW--QAQWAAAGLPLTPAEMEDWLAERATAREQVR 622

Query: 91  TSEDTRVE--ELRQLSQDRDKAWQSELDAVQKQQSMDSAALGSAMNEIQRLKFQLEKVAE 148
                R E   L         A ++ L AV     +    L   +   ++L  + EK A 
Sbjct: 623 AYFKARAELDALLDRRARLRAALRAALKAVAI--VLPGEELAELLELARQLLEEAEKQAA 680

Query: 149 SEAAQTKHAESAYAEMQNLRIELTETLSLVEKLKNELSYCKESESQALEDVRKSQMQLET 208
            +A+  +    A   ++       E  S +E  + +          A    R S      
Sbjct: 681 RKASLDERLRDAERALEEAEERHDEAQSALEAWQEQWYDALLE---AGLGGRASPAGALD 737

Query: 209 ANANLEMLRSDGIKATEAYNTLSLELELSKARVKS-LEELVSKLQNDLLNSSNKLAESMG 267
           A   L+ ++ + ++A +        +E   AR +  +E L   +  ++L +         
Sbjct: 738 ALELLQNIK-EKLQAADDLRQRIAAMERDLARFEEEVEALAEAVAPEMLGTPADETARAL 796

Query: 268 DVHLSQKNGENEEIDKLKGELDLARNELRQLRSALDASETRYQEEYIQSTLQIRSAYEQL 327
              L +        +KL  E++ A  E+ +  +ALD +E R           +  A    
Sbjct: 797 KQRLKRARDTAAAAEKLAEEIEEAEKEVSEAAAALDEAEARLTA--------LLRAARCT 848

Query: 328 ERAKSESSQREADLETELKNVKAQIEELRANLLDKETELQSISEENEGLNLKIKTNESNQ 387
              +  ++   +D   EL+   A +E            L+++  E   L+     +E   
Sbjct: 849 TIEELLAAVERSDTYRELRKRIAALERTLVRAGGG-LSLEALVAEAAALDP----DELPA 903

Query: 388 RDSKLAVELNKLEAEVVEFKASILDKETELMSLTEQNGMLKMEIENREMERNKVNDEA-- 445
           R  +LA ++ +LE E+ E    +   + EL  +   +   ++E   RE    ++ D A  
Sbjct: 904 RLEELARDIEELEEELNELAQEVGAAKQELARMDGGSTAAELE-AERESLLAQLRDLAER 962

Query: 446 -ISLAEAARVAEREA 459
            + LA A+R+  +  
Sbjct: 963 YLELALASRLLRKAI 977

This domain is found in a number of double-strand DNA break proteins. This domain contains a P-loop motif. Length = 1118

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 45.9 bits (109), Expect = 6e-05
 Identities = 52/213 (24%), Positives = 98/213 (46%), Gaps = 8/213 (3%)

Query: 315 QSTLQIRSAYEQLERAKSESSQREADLETELKNVKAQIEELRANLLDKETELQSISEENE 374
           +S+L  +   ++LE   +E   +   LE ELK++K ++  L   L +   +L+ +  + E
Sbjct: 660 RSSLAQKRELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLE 719

Query: 375 GLNLKIKTNESNQRD-----SKLAVELNKLEAEVVEFKASILDKETELMSLTEQNGMLKM 429
            L  ++   E           +L  EL +LE E+ E +  + + E EL SL E    LK 
Sbjct: 720 ELKRELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKE 779

Query: 430 EIENREMERNKVNDEAISLAEAARVAEREALM---KVGFLTEEADKSSRRAARVTEQLDA 486
           EIE  E +R  + +E   L E    AER       ++  L +  ++  +    + E+++ 
Sbjct: 780 EIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEE 839

Query: 487 AQAASTEMEAELRKLKVQSDQWRKAAEAATAML 519
            +    E+E EL +L+ + ++ ++  E   A  
Sbjct: 840 LEEKLDELEEELEELEKELEELKEELEELEAEK 872

Length = 1163

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 45.8 bits (109), Expect = 6e-05
 Identities = 73/331 (22%), Positives = 140/331 (42%), Gaps = 39/331 (11%)

Query: 29   RVSELESQLAQLQEDLKKAKEQLNASDSWKRRAQQEAEEAKKQLSAMSARLEESQQQLLE 88
            ++ E+E ++ QL+++ +K KE+L   +      +QE E  K +L  + AR+EE ++ L +
Sbjct: 717  KIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHK 776

Query: 89   ITTSEDTRVEELRQLSQDRDKAWQSELDAVQKQQSMDSAALGSAMNEIQRLKFQLEKVAE 148
            +   E+   +   +LS  R    Q+EL  ++++ S   A L     ++ RL  + E    
Sbjct: 777  L---EEALNDLEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKE---- 829

Query: 149  SEAAQTKHAESAYAEMQNLRIELTETLSLVEKLKNELSYCKESESQALEDVRKSQMQLET 208
                   + E    E+Q  RI+L E +  +EK    L+  KE   + LE++  +   LE+
Sbjct: 830  -------YLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLES 882

Query: 209  ANANLEM----LRSDGIKATEAYNTLSLELELSKARVKSLEELVSKLQNDLLNSSNKLAE 264
               +L+     L +   +       L  ++E  + R+  L+  +  L+ +L    +   E
Sbjct: 883  RLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGE 942

Query: 265  SMGDVHLSQKNGENEEIDKLKGELDLARNELRQLRSALDASETRYQEEYIQSTLQIRSAY 324
                    +   E   ++ ++ EL     E+R L      +   Y+E             
Sbjct: 943  ------DEEIPEEELSLEDVQAELQRVEEEIRALEPVNMLAIQEYEEV------------ 984

Query: 325  EQLERAKSESSQREADLETELKNVKAQIEEL 355
                +   E  ++ A LE E K +  +IEE 
Sbjct: 985  ---LKRLDELKEKRAKLEEERKAILERIEEY 1012

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 45.5 bits (108), Expect = 7e-05
 Identities = 62/295 (21%), Positives = 126/295 (42%), Gaps = 25/295 (8%)

Query: 24   KQRPSRVSELESQLAQLQEDLKKAKEQLNASDSWKRRAQQEAEEAKKQLSAMSARLEESQ 83
            K+  + + E   QL    E+L++  E+L       +   +E EE  + L    A+L+E  
Sbjct: 722  KRELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEI 781

Query: 84   QQLLEITTSEDTRVEELRQLSQDRDKAWQSELDAVQKQQSMDSAALGSAMNEIQRLKFQL 143
            ++L E   +    +EEL +  ++ ++     LDA++++             EI+ L+ ++
Sbjct: 782  EELEEKRQALQEELEELEEELEEAER----RLDALERELESLEQRRERLEQEIEELEEEI 837

Query: 144  EKVAESEAAQTKHAESAYAEMQNLRIELTETLSLVEKLKNELSYCKESESQALEDVRKSQ 203
            E++ E      +  E    E++ L+ EL E  +  E+L++EL   +E + +  E      
Sbjct: 838  EELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEE------ 891

Query: 204  MQLETANANLEMLRSDGIKATEAYNTLSLELELSKARVKSLEEL--------VSKLQNDL 255
             +L    + L  L+ +  K  E    L  +LE  +  +  LEE         +       
Sbjct: 892  -ELRELESELAELKEEIEKLRERLEELEAKLERLEVELPELEEELEEEYEDTLETELERE 950

Query: 256  LNSSNKLAESMGDVHLS------QKNGENEEIDKLKGELDLARNELRQLRSALDA 304
            +    +  E++G V+L       +     EE+   + +L+ A+ +L ++   LD 
Sbjct: 951  IERLEEEIEALGPVNLRAIEEYEEVEERYEELKSQREDLEEAKEKLLEVIEELDK 1005

Length = 1163

>gnl|CDD|221432 pfam12128, DUF3584, Protein of unknown function (DUF3584)

 Score = 45.8 bits (109), Expect = 7e-05
 Identities = 106/527 (20%), Positives = 190/527 (36%), Gaps = 90/527 (17%)

Query: 32  ELESQLAQLQEDLKKAKEQLNAS-----DSWKRRA---QQEAEEAKKQLSAMSARLEESQ 83
             E +LA+ QE+ ++AK +L        D  K       QE   A  +L+A  + LE  +
Sbjct: 274 ADEERLAEEQEERQEAKNRLRQQLRTLEDQLKEARDELNQELSAANAKLAADRSELELLE 333

Query: 84  QQLLEITTSEDTRVEELRQLSQDRDKAWQSELDAVQKQQSMDSAALGSAMNEIQRLKF-- 141
            Q       ED  +E+L Q   D+  + +SEL+ V+ +    +        + +RLK   
Sbjct: 334 DQKG---AFEDADIEQL-QADLDQLPSIRSELEEVEARLDALTGKHQDVQRKYERLKQKI 389

Query: 142 -------------QLEKVAESEAAQTKHAESAY---------------AEMQNLRIELTE 173
                        +L  + E +  Q    E                   E      EL  
Sbjct: 390 KEQLERDLEKNNERLAAIREEKDRQKAAIEEDLQALESQLRQQLEAGKLEFNEEEYELEL 449

Query: 174 TLSLVEKLKNELSYCKE-SESQALEDVRKSQMQ--LETANANLEMLRSDGIKATEAYNTL 230
            L  +++  +  +   E  E   + D    + Q   E A AN+E L+S+  +  +  +  
Sbjct: 450 RLGRLKQRLDSATATPEELEQLEINDEALEKAQEEQEQAEANVEQLQSELRQLRKRRDEA 509

Query: 231 SLELELSKARVKSLEELVSKLQNDLLNSSNKLAESMGDVHLSQKNGENEEIDKLKGELDL 290
              L+ ++ R+  L + + +L+  L   +  L   + +    +  G  E I K+     L
Sbjct: 510 LEALQRAERRLLQLRQALDELELQLSPQAGSLLHFLRN----EAPGWEESIGKVISPELL 565

Query: 291 ARNELRQLRSALDASETRY----------QEEYIQSTLQIRSAYEQLERAKSESSQREAD 340
            R +L         S+T Y            +Y  +  ++R   +Q E A   +  ++  
Sbjct: 566 ERTDLDPQLVEGSDSDTLYGVSLDLQRLDVPDYAANETELRERLQQAEEALQSAVAKQKQ 625

Query: 341 LETELKNVKAQIEELRANLLDKETELQSISEENEGLNLKIKTNESNQRDSKLAVELNKLE 400
            E +L    A++EE +    +  T L+    + + L         N++ S L  +L    
Sbjct: 626 AEEQLVQANAELEEQKRAEAEARTALKQARLDLQRLQ--------NEQQS-LKDKLELAI 676

Query: 401 AEVVEFKASILDKETELMSLTEQNGMLKMEIENREMERNKVNDEAISLAEAARVAEREAL 460
           AE           ET+L  L  Q   L  + +            A   A      E    
Sbjct: 677 AE------RKQQAETQLRQLDAQLKQLLEQQQ------------AFLEALKDDFRELRTE 718

Query: 461 MKVGFLTEEADKSSRRAARVTEQLDAAQAASTEMEAELRKLKVQSDQ 507
               +   E +  ++ A        A +AA T+ +A L++LK Q D+
Sbjct: 719 RLAKWQVVEGELDNQLAQLSA----AIEAARTQAKARLKELKKQYDR 761

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication. Length = 1198

>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional

 Score = 45.0 bits (107), Expect = 9e-05
 Identities = 100/511 (19%), Positives = 185/511 (36%), Gaps = 63/511 (12%)

Query: 23  EKQRPSRVSELESQLAQLQEDLKKAKEQLNASDSWKRRAQQEAEEAKKQLSAMSARLEES 82
           EK    R++ LES+LA+L E++++ +EQ       + +A++  +EA + L     R EE 
Sbjct: 201 EKDLHERLNGLESELAELDEEIERYEEQ-------REQARETRDEADEVLEEHEERREEL 253

Query: 83  QQQLLEITTSEDT-------------RVEELRQ-----------------LSQDRDKAWQ 112
           +    EI    +T              V +LR+                 L     +A +
Sbjct: 254 ETLEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVE 313

Query: 113 SELDAVQKQQSMDSAALGSAMNEIQRLKFQLEKVAESEAAQTKHAESAYAEMQNLRIELT 172
           +  + ++ +       L       Q    + E + E      + AE    E   L  EL 
Sbjct: 314 ARREELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELESELE 373

Query: 173 ETLSLVEKLKNELSYCKESESQALEDVRKSQMQLETANANLEMLRSDGIKATEAYNTLSL 232
           E    VE  + E+   +E   +  E    + + L  A   LE LR +  +  E    L  
Sbjct: 374 EAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAELEA 433

Query: 233 ELELSKARVKSLEELVSKLQNDLLNSSNKLAESMGDVHLSQKNGENEEIDKLKGELDLAR 292
            L  ++ RV+  E L+          + K  E    V  S      EE  +   EL+   
Sbjct: 434 TLRTARERVEEAEALL---------EAGKCPECGQPVEGSPHVETIEEDRERVEELEAEL 484

Query: 293 NELRQLRSALDASETRYQEEYIQSTLQIRSAYEQLERAKSESSQREADLETELKNVKAQI 352
            +L +    ++    R      +  ++     E+LE  + +  +  A+    ++  + + 
Sbjct: 485 EDLEEEVEEVEERLER-----AEDLVEAEDRIERLEERREDLEELIAERRETIEEKRERA 539

Query: 353 EELRANLLDKETELQSISEENEGLNLKIKTNESNQRDSKLAVELNKLEAEVVEFKASI-- 410
           EELR    + E E +   E            E+ +   +   E+ +L +++ E K  I  
Sbjct: 540 EELRERAAELEAEAEEKREA---------AAEAEEEAEEAREEVAELNSKLAELKERIES 590

Query: 411 LDKETELMSLTEQNGMLKMEIENREMERNKVNDEAISLAEAARVAEREALMKV-GFLTEE 469
           L++   L++           +  +     ++NDE        R  +RE   +      EE
Sbjct: 591 LERIRTLLAAIADAEDEIERLREKREALAELNDERRERLAEKRERKRELEAEFDEARIEE 650

Query: 470 ADKSSRRAARVTEQLDAAQAASTEMEAELRK 500
           A +   RA    EQ++       E   +L+ 
Sbjct: 651 AREDKERAEEYLEQVEEKLDELREERDDLQA 681

Length = 880

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 44.7 bits (106), Expect = 2e-04
 Identities = 50/254 (19%), Positives = 100/254 (39%), Gaps = 17/254 (6%)

Query: 205 QLETANANLEMLRSDGIKATEAYNTLSLELELSKARVKSLEELVSKLQNDLLNSSNKLAE 264
           +LE     L+    +  + T     L  +LE  +  V  LEE + +LQ +L   +N+++ 
Sbjct: 240 ELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISR 299

Query: 265 SMGDVHLSQKNGENEEIDKLKGELDLARNELRQLRSALDASETRYQEEYIQSTLQIRSAY 324
                 + ++   N E    + E  L   E +    A + +E   +              
Sbjct: 300 LEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEK-------------L 346

Query: 325 EQLERAKSESSQREADLETELKNVKAQIEELRANLLDKETELQSISEENEGLNLKIKTNE 384
           E+L+           +LE EL+ +++++EEL   L    +++  +  +   LN +I+  E
Sbjct: 347 EELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLE 406

Query: 385 SNQRDSKLAVELNKLEAEVVEFKASILDKETELMSLTEQNGMLKMEIENREMERNKVNDE 444
           +     +   E  + E E +  K    + +     L E    L+ E+E  + E  ++ + 
Sbjct: 407 ARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEE----LEEELEELQEELERLEEA 462

Query: 445 AISLAEAARVAERE 458
              L E    AE+ 
Sbjct: 463 LEELREELEEAEQA 476

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 43.5 bits (103), Expect = 3e-04
 Identities = 52/289 (17%), Positives = 120/289 (41%), Gaps = 18/289 (6%)

Query: 21  ALEKQRPSRVSELESQLAQLQEDLKKAKEQLNASDSWKRRAQQEAEEAKKQLSAMS---- 76
           ALE+Q+      +E QLA L+E+L+K  E+++  +      +Q  EE  K++  +     
Sbjct: 234 ALERQK----EAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQ 289

Query: 77  ----ARLEESQQQLLEITTSEDTRVEELRQLSQDRDKAWQSELDAVQKQQSMDSAALGSA 132
                ++ E + ++  +  S   +  EL    +   K  ++E+D +  +       +   
Sbjct: 290 LRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKL-EAEIDKLLAEIEELEREIEEE 348

Query: 133 MNEIQRLKFQLEKVAESEAAQTKHAESAYAEMQNLRIELTETLSLVEKLKNELSYCKESE 192
                +L  +  ++ E         E    E    R EL +    +EKLK E++  K   
Sbjct: 349 RKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKREL 408

Query: 193 SQALEDVRKSQMQLETANANLEMLRSDGIKATEAYNTLSLELELSKARVKSLEELVSKLQ 252
            +  E++++   +L   NA +  + +   +  E     +LE++  + +++ L   +SK +
Sbjct: 409 DRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYE 468

Query: 253 NDLLNSSNKLAESMGDVHLSQKNGENEEIDKLKGELDLARNELRQLRSA 301
            +L +   +      ++   Q+     E+ + + +   +   +R  R+ 
Sbjct: 469 QELYDLKEEYDRVEKELSKLQR-----ELAEAEAQARASEERVRGGRAV 512

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|221432 pfam12128, DUF3584, Protein of unknown function (DUF3584)

 Score = 42.8 bits (101), Expect = 6e-04
 Identities = 62/360 (17%), Positives = 130/360 (36%), Gaps = 30/360 (8%)

Query: 32  ELESQLAQLQEDLKKAKEQLNASDSWKRRAQQEAEEAKKQLSAMSARLEESQQQLLEITT 91
           EL  +L Q +E L+ A  +   ++    +A  E EE K+  +     L++++  L  +  
Sbjct: 604 ELRERLQQAEEALQSAVAKQKQAEEQLVQANAELEEQKRAEAEARTALKQARLDLQRLQN 663

Query: 92  SEDTRVEELRQLSQDRDKAWQSELDAVQKQQSMDSAALGSAMNEIQRLKFQ-----LEKV 146
            + +  ++L     +R +  +++L  +  Q         + +  ++    +     L K 
Sbjct: 664 EQQSLKDKLELAIAERKQQAETQLRQLDAQLKQLLEQQQAFLEALKDDFRELRTERLAKW 723

Query: 147 AESEAAQTKHAESAYAEMQNLRIELTETLSLVEKLKNELSYCKESESQALED-------V 199
              E           A ++  R +           K  L   K+   + L         V
Sbjct: 724 QVVEGELDNQLAQLSAAIEAARTQ----------AKARLKELKKQYDRELASLDVDPNTV 773

Query: 200 RKSQMQLETANANLEMLRSDGIKATEA---YNTLSLELELSKARVKSLEELVSKLQNDLL 256
           ++ + Q+E     +E +     +  E         L  +  +    +L   + +L++   
Sbjct: 774 KELKRQIEELETTIERIAVRRPEVREYRAFMQETWLHRDSLREERPNLAIQLRELESSAE 833

Query: 257 NSSNKLAESMGDVHLSQKNGENE--EIDKLKGELDLARNELRQLRSALDASETRYQEEYI 314
               +L   + D  L +K  E E   ++K   +LD     LR     L  +E +      
Sbjct: 834 ELQQELTRLIKDTKLRRKKLEQERKALEKQLDQLDELLRGLRDEMRQL--AELKEPANAN 891

Query: 315 QSTLQIRSAYEQLERAKSESSQREADLETELKNVKAQIEELRANLLDKETELQSISEENE 374
           Q+   I    +QLE  K +  +   DL+  L+     I++   + L  ET  +  S ++ 
Sbjct: 892 QAEGSISERLDQLEEFKRKRKRLSGDLKKFLERFDGVIKDHSGSGLY-ETWQKLRSNDST 950

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication. Length = 1198

>gnl|CDD|234501 TIGR04211, SH3_and_anchor, SH3 domain protein

 Score = 40.4 bits (95), Expect = 9e-04
 Identities = 26/122 (21%), Positives = 56/122 (45%), Gaps = 13/122 (10%)

Query: 313 YIQSTLQIRSAYEQLERAKSESSQREADLETELKNVKAQIEELRANLLDKETELQSISEE 372
           Y+  T   R    +L++  +E  +  A+L+ +L  ++ + +EL+  L   E EL+ + +E
Sbjct: 57  YLSDTPSARERLPELQQELAELQEELAELQEQLAELQQENQELKQELSTLEAELERLQKE 116

Query: 373 NEGLNLKIKTNESNQRDSKLAVELNKLEAEVVEFKASILDKETELMSLTEQNGMLKMEIE 432
              +          ++ S  A+E   L+ E  E +  + + + E  +L  +N  L+   +
Sbjct: 117 LARI----------KQLSANAIE---LDEENRELREELAELKQENEALEAENERLQENEQ 163

Query: 433 NR 434
            R
Sbjct: 164 RR 165

Members of this protein family have a signal peptide, a strongly conserved SH3 domain, a variable region, and then a C-terminal hydrophobic transmembrane alpha helix region. Length = 198

>gnl|CDD|221432 pfam12128, DUF3584, Protein of unknown function (DUF3584)

 Score = 41.6 bits (98), Expect = 0.001
 Identities = 86/496 (17%), Positives = 173/496 (34%), Gaps = 50/496 (10%)

Query: 27  PSRVSELESQLAQLQEDLKKAKEQLNASDSWKRRAQQEAEEAKKQ-------LSAMSARL 79
            +   E   QL    E L+KA+E+   +++   + Q E  + +K+       L     RL
Sbjct: 461 ATATPEELEQLEINDEALEKAQEEQEQAEANVEQLQSELRQLRKRRDEALEALQRAERRL 520

Query: 80  EESQQQLLEITTSEDTRVEELRQLSQDRDKAWQSELDAVQKQQSMDSAAL------GSAM 133
            + +Q L E+      +   L    ++    W+  +  V   + ++   L      GS  
Sbjct: 521 LQLRQALDELELQLSPQAGSLLHFLRNEAPGWEESIGKVISPELLERTDLDPQLVEGSDS 580

Query: 134 NEIQRLKFQLEKVAESEAAQTKHAESAYAEMQNLRIELTETLSLVEKLKNELSYCKESES 193
           + +  +   L+++   + A  +           LR  L +    ++    +    +E   
Sbjct: 581 DTLYGVSLDLQRLDVPDYAANE---------TELRERLQQAEEALQSAVAKQKQAEEQLV 631

Query: 194 QALEDVRKSQMQLETANANLEMLRSDGIKATEAYNTLSLELELS-KARVKSLEELVSKLQ 252
           QA  ++ + +     A   L+  R D  +      +L  +LEL+   R +  E  + +L 
Sbjct: 632 QANAELEEQKRAEAEARTALKQARLDLQRLQNEQQSLKDKLELAIAERKQQAETQLRQLD 691

Query: 253 NDLLNSSNKLAESMGDVHLSQKNGENEEIDKLKGELDLARNE-LRQLRSALDASETRYQE 311
             L               L Q+    E +     EL   R    + +   LD    +   
Sbjct: 692 AQL------------KQLLEQQQAFLEALKDDFRELRTERLAKWQVVEGELDNQLAQLSA 739

Query: 312 EYIQSTLQIRSAYEQLERAKSESSQREADLETELKNVKAQIEELRANLLDKETELQSISE 371
               +  Q ++  ++L++               +K +K QIEEL   +         + E
Sbjct: 740 AIEAARTQAKARLKELKKQYDRELASLDVDPNTVKELKRQIEELETTIERIAVRRPEVRE 799

Query: 372 ENEGLNLKIKTNESNQRDSKLAVELNKLEAEVVEFKASILDKETELMSLTEQNGMLKMEI 431
               +       E+      L  E   L  ++ E ++S  + + EL  L +     K+  
Sbjct: 800 YRAFM------QETWLHRDSLREERPNLAIQLRELESSAEELQQELTRLIKD---TKLRR 850

Query: 432 ENREMERNKVNDEAISLAEAAR----VAEREALMKVGFLTEEADKS-SRRAARVTEQLDA 486
           +  E ER  +  +   L E  R       + A +K      +A+ S S R  ++ E    
Sbjct: 851 KKLEQERKALEKQLDQLDELLRGLRDEMRQLAELKEPANANQAEGSISERLDQLEEFKRK 910

Query: 487 AQAASTEMEAELRKLK 502
            +  S +++  L +  
Sbjct: 911 RKRLSGDLKKFLERFD 926

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication. Length = 1198

>gnl|CDD|235316 PRK04863, mukB, cell division protein MukB; Provisional

 Score = 41.5 bits (98), Expect = 0.001
 Identities = 65/348 (18%), Positives = 127/348 (36%), Gaps = 70/348 (20%)

Query: 30  VSELESQLAQLQEDLKKAKEQLNASDSWKRRAQQEAEEAKKQLSAMSARLEESQQQLLEI 89
           + ELE +L +  E +++A EQ   +++    A++E +E K QL+     L+  Q + ++ 
Sbjct: 357 LEELEERLEEQNEVVEEADEQQEENEARAEAAEEEVDELKSQLADYQQALDVQQTRAIQY 416

Query: 90  TTSEDTRVEELRQLSQDRD------KAWQSELDAVQKQQSMDSAALGSAMNEIQRLKFQL 143
             +    +E  +QL    D      + W  E  A +++           +  +++     
Sbjct: 417 QQAV-QALERAKQLCGLPDLTADNAEDWLEEFQAKEQE-------ATEELLSLEQ----- 463

Query: 144 EKVAESEAAQTKHAESAYAEMQNLRIELTETLSLVEKLKNEL--SYCKESESQALEDVRK 201
            K++ ++AA ++  ++                 LV K+  E+  S   +   + L  +R+
Sbjct: 464 -KLSVAQAAHSQFEQAY---------------QLVRKIAGEVSRSEAWDVARELLRRLRE 507

Query: 202 SQMQLETANANLEMLRSDGIKATEAYNTLSLELELSKARVKSLEELVSKLQNDLLNSSNK 261
            +   E     L+ LR          + L   L   +   + L E   +L  +L +    
Sbjct: 508 QRHLAE----QLQQLRM-------RLSELEQRLRQQQRAERLLAEFCKRLGKNLDD---- 552

Query: 262 LAESMGDVHLSQKNGENEEIDKLKGELDLARNELRQLRSALDASETRYQEEYIQST--LQ 319
             E   +    +     E + +   E    R  LRQ    L A   R Q    ++   L 
Sbjct: 553 --EDELEQLQEELEARLESLSESVSEARERRMALRQQLEQLQA---RIQRLAARAPAWLA 607

Query: 320 IRSAYEQLERAKSESSQREADLETELKNVKAQIEELRANLLDKETELQ 367
            + A  +L        Q   + E         + E    LL++E EL 
Sbjct: 608 AQDALARL------REQSGEEFED-----SQDVTEYMQQLLERERELT 644

Length = 1486

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 41.2 bits (97), Expect = 0.002
 Identities = 53/275 (19%), Positives = 116/275 (42%), Gaps = 14/275 (5%)

Query: 44  LKKAKEQLNASDSWKRRAQQEAEEAKKQLSAMSARLEESQQQLLEITT-------SEDTR 96
            +  + Q  A +      ++E E+  +++S +  RLEE +Q L E+          E  R
Sbjct: 232 KEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLR 291

Query: 97  V-EELRQLSQDRDKAWQSELDAVQKQQSMDSAALGSAMNEIQRLKFQLEKVAESEAAQTK 155
           V E++ +L  +     +S  +  ++ +  +   L     EI +L  ++E++      + K
Sbjct: 292 VKEKIGELEAEIASLERSIAEKERELEDAE-ERLAKLEAEIDKLLAEIEELEREIEEERK 350

Query: 156 HAESAYAEMQNLRIELTETLSLVEKLKNELSYCKESESQALEDVRKSQMQLETANANLEM 215
             +    E   L+ EL +  + +E++  E +  ++      E + K + ++      L+ 
Sbjct: 351 RRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDR 410

Query: 216 LRSDGIKATEAYNTLSLELELSKARVKSLEELVSKLQNDLLNSSNKLAESMGDVHLSQKN 275
           L+ +  + +E    L+  +   +A++  LEE       ++     KL +   D      +
Sbjct: 411 LQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAAD-----LS 465

Query: 276 GENEEIDKLKGELDLARNELRQLRSALDASETRYQ 310
              +E+  LK E D    EL +L+  L  +E + +
Sbjct: 466 KYEQELYDLKEEYDRVEKELSKLQRELAEAEAQAR 500

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 40.9 bits (95), Expect = 0.002
 Identities = 94/474 (19%), Positives = 200/474 (42%), Gaps = 18/474 (3%)

Query: 49   EQLNASDSWKRRAQQEAEEAKKQLSAMSARLEESQQQLLEITTSEDTR-VEELRQLSQDR 107
            E+   +   +R+A  +AEEA+K   A   +  E +++  E   +E+ +  +E ++ +++ 
Sbjct: 1258 EEARMAHFARRQAAIKAEEARK---ADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEA 1314

Query: 108  DKAWQSELDAVQKQQSMDSAALGSAMNEIQRLKFQLEKVAESEAAQTKHAESAYAEMQNL 167
             KA +++  A + ++  D  A      E ++     +  AE+ A + + AE      +  
Sbjct: 1315 KKADEAKKKAEEAKKKAD--AAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKK 1372

Query: 168  RIELTETLSLVEKLKNELSYCKESESQALEDVRKSQMQLETANANLEMLRSDGIKATEAY 227
            + E  +     +K   E     E++ +A ED +K+    E   A     ++D  K     
Sbjct: 1373 KEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKAD---ELKKAAAAKKKADEAKKKAEE 1429

Query: 228  NTLSLELELSKARVKSLEELVSKLQN--DLLNSSNKLAESMGDVHLSQKNGENEEIDKLK 285
               + E +      K  +E   K +       +  K  E+       +K  E ++ D+ K
Sbjct: 1430 KKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAK 1489

Query: 286  GELDLARNELRQLRSALDASETRYQEEYIQSTLQIRSAYEQLERAKSESSQREADLETEL 345
             + + A+ +  + + A +A +   + +  +   +   A +  E  K++ +++  + +   
Sbjct: 1490 KKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKAD 1549

Query: 346  KNVKAQIEELRANLLDKETELQSISEENEGLNLKIKTNESNQRDSKLAVELNKLEAEVVE 405
            +  KA  EEL+     K+ E    +EE++ + L+ K  E+ + +     E+ KL  E  +
Sbjct: 1550 ELKKA--EELKKAEEKKKAEEAKKAEEDKNMALR-KAEEAKKAEEARIEEVMKLYEEEKK 1606

Query: 406  FKASILDKETELMSLTEQNGMLKMEIENREMER-NKVNDEAISLAEAARVAEREALMKVG 464
             KA    K  E     E+  + K E E +++E+  K   E    AE  + AE E  +K  
Sbjct: 1607 MKAEEAKKAEEAKIKAEE--LKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAA 1664

Query: 465  FLTEEADKSSRRAARV-TEQLDAAQAASTEMEAELRKLKVQSDQWRKAAEAATA 517
               ++A++  ++A      + D  +AA    +      K +  + ++A E   A
Sbjct: 1665 EEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKA 1718

Length = 2084

>gnl|CDD|234501 TIGR04211, SH3_and_anchor, SH3 domain protein

 Score = 39.6 bits (93), Expect = 0.002
 Identities = 25/101 (24%), Positives = 49/101 (48%), Gaps = 4/101 (3%)

Query: 28  SRVSELESQLAQLQEDLKKAKEQLNASDSWKRRAQQEAEEAKKQLSAMSARLEESQQ--- 84
            R+ EL+ +LA+LQE+L + +EQL       +  +QE    + +L  +   L   +Q   
Sbjct: 66  ERLPELQQELAELQEELAELQEQLAELQQENQELKQELSTLEAELERLQKELARIKQLSA 125

Query: 85  QLLEITTSEDTRVEELRQLSQDRDKAWQSELDAVQKQQSMD 125
             +E+        EEL +L Q+ +   ++E + +Q+ +   
Sbjct: 126 NAIELDEENRELREELAELKQENEAL-EAENERLQENEQRR 165

Members of this protein family have a signal peptide, a strongly conserved SH3 domain, a variable region, and then a C-terminal hydrophobic transmembrane alpha helix region. Length = 198

>gnl|CDD|130902 TIGR01843, type_I_hlyD, type I secretion membrane fusion protein, HlyD family

 Score = 40.4 bits (95), Expect = 0.002
 Identities = 39/200 (19%), Positives = 83/200 (41%), Gaps = 16/200 (8%)

Query: 201 KSQMQLETANANLEMLRSDGIKATEAYNTLSLELELSKARVKSLEELVSKLQNDLLNSSN 260
            ++++ +      E+ R      ++A      +L    A   ++ EL+   Q+       
Sbjct: 83  AAELESQVLRLEAEVARLRAEADSQAAIEFPDDLL--SAEDPAVPELIKGQQSLF----- 135

Query: 261 KLAESMGDVHLSQKNGENEEIDKLKGELDLARNELRQLRSALDASETRYQEEYIQSTLQI 320
              ES      +Q      +I +L+ EL   + +L+ LR  L+      +E   +  L+ 
Sbjct: 136 ---ESRKSTLRAQLELILAQIKQLEAELAGLQAQLQALRQQLEVIS---EELEARRKLKE 189

Query: 321 RSAYEQLERAKSESSQREADLETELKNVKAQIEELRANLLDKETELQSISEENEGLNLKI 380
           +    +LE  + E  +  A+ + EL  ++A++E L+  + + + E Q I +      +  
Sbjct: 190 KGLVSRLELLELE--RERAEAQGELGRLEAELEVLKRQIDELQLERQQIEQTFRE-EVLE 246

Query: 381 KTNESNQRDSKLAVELNKLE 400
           +  E+  R ++L   LNK  
Sbjct: 247 ELTEAQARLAELRERLNKAR 266

Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins [Protein fate, Protein and peptide secretion and trafficking]. Length = 423

>gnl|CDD|221952 pfam13166, AAA_13, AAA domain

 Score = 40.4 bits (95), Expect = 0.003
 Identities = 73/419 (17%), Positives = 155/419 (36%), Gaps = 81/419 (19%)

Query: 32  ELESQLAQLQEDLKKAKEQLNASDSWKRRAQQEAEEAKKQLSAMSARLEESQQQLLEITT 91
           E+E+Q+ +L+++LKK +E++        + + E E+ ++                 E+  
Sbjct: 92  EIEAQIEELKKELKKLEEKI-------EQLEAEIEKKEE-----------------ELEK 127

Query: 92  SEDTRVEELRQLSQDRDKAWQSELDAVQKQQSMDSAALGSAMNEIQRLKFQLEKVAESEA 151
           +++             DKAW+      +K  S  S AL     + +  K +L  + E ++
Sbjct: 128 AKNKF----------LDKAWKKL---AKKYDSNLSEALKGLNYK-KNFKEKL--LKELKS 171

Query: 152 AQTKHAESAYAEMQNLRIELT-----ETLSLVEKLKNELSYCKESESQALEDVRKSQMQL 206
                +     E    +I+         L+L+     +    +++E      +  S + +
Sbjct: 172 VILNASSLLSLEELKAKIKTLFSSNKPELALLTLSVIDFDEIEQAEILEKSIIGSSDVPI 231

Query: 207 ETANANLEMLRSDGIKATEAY-----------NTLSLEL--ELSKA---RVKSLEELVSK 250
                NL    SD +K    Y            T++ E   EL        + L E + +
Sbjct: 232 SELINNLGN--SDWVKEGLEYHEEGDTCPFCQQTITEERKAELEAHFDEEYQELIEQLEE 289

Query: 251 LQNDLLNSSNKLAESMGD-VHLSQKNGE-NEEIDKLKGELDLARNELRQLRSAL-----D 303
           L +   +   K  E +   +   ++N E   ++++LK  L+     L +    L     D
Sbjct: 290 LIDKYESHIEKALEELESILDTEKENSEFKLDVEELKALLEALEEILEKNLQKLEEKLKD 349

Query: 304 ASETRYQEEYIQSTLQIRSAYEQLERAKSESSQREADLETELKNVKAQIEELRANLLDKE 363
            S +   E        I    + +     E +++  +L+ E    K ++       L + 
Sbjct: 350 PSTSIELESITDLIESINDIIDAINELIREHNEKIDNLKKEKNKAKKKLWLHLVAELKE- 408

Query: 364 TELQSISEENEGLNLKIKTNESNQRDSKLAVELNKLEAEVVEFKASILDKETELMSLTE 422
            ++ +  +E +GL   I + E          E+ +LEAE+   +  I + E +L ++  
Sbjct: 409 -DIDAYQKEKKGLEKAINSLEK---------EIKQLEAEIKALEKEIKELEKQLTNIEP 457

This family of domains contain a P-loop motif that is characteristic of the AAA superfamily. Many of the proteins in this family are conjugative transfer proteins. This family includes the PrrC protein that is thought to be the active component of the anticodon nuclease. Length = 713

>gnl|CDD|144972 pfam01576, Myosin_tail_1, Myosin tail

 Score = 40.0 bits (94), Expect = 0.003
 Identities = 106/496 (21%), Positives = 203/496 (40%), Gaps = 70/496 (14%)

Query: 30  VSELESQLAQLQEDLKKAKEQLNASDSWKRRAQQEAEEAKKQLSAMSARLEES------- 82
           V++L+ ++ +L+  +++ +E+L A  + + +A++   +  ++L  +S RLEE+       
Sbjct: 34  VAQLQKKIKELEARIRELEEELEAERAARAKAEKARADLSRELEELSERLEEAGGATAAQ 93

Query: 83  --------------QQQLLEITTSEDTRVEELRQLSQDRDKAWQSELDAVQKQQSMDSAA 128
                         ++ L E     +  +  LR+  QD       +++ +QKQ++     
Sbjct: 94  IELNKKREAELAKLRKDLEEANLQHEEALATLRKKHQDAINELSEQIEQLQKQKAKAEKE 153

Query: 129 LGSAMNEIQRLKFQLEKVAESEAAQTKHAESAYAEMQNLRIELTETLSLVEKLKNELSYC 188
                 E+  L  QL+++A+++    K A+   +++  L+++L E     ++  N+L+  
Sbjct: 154 KSQLQAEVDDLLAQLDQIAKAKLNAEKKAKQLESQLSELQVKLDEL----QRQLNDLTSQ 209

Query: 189 KESESQALEDVRKSQMQLETANANLEMLRSDGIKATEAYNTLSLELELSKARVKSLEELV 248
           K        D+ +   + E   +NL  L+S             LE +L +A+    EE  
Sbjct: 210 KSRLQSENSDLTRQLEEAEAQVSNLSKLKS------------QLESQLEEAKRSLEEESR 257

Query: 249 SKLQNDLLNSSNKLAESMGDVHLSQKNGENEEIDKLKGELDLARNELRQLRSALDASETR 308
            +     L +  +  E   D    Q   E+E   +L+ +L  A  E++Q RS       +
Sbjct: 258 ERAN---LQAQLRQLEHDLDSLREQLEEESEAKAELERQLSKANAEIQQWRS-------K 307

Query: 309 YQEEYIQSTLQIRSAYEQLERAKSESSQREADLETELKNVKAQIEELRANLLDKETELQS 368
           ++ E            E+LE  K + +Q+ ++LE   +   A+ + L       ++EL+ 
Sbjct: 308 FESEGALRA-------EELEELKKKLNQKISELEEAAEAANAKCDSLEKTKSRLQSELED 360

Query: 369 ISEENEGLNLKIKTNESNQR--DSKLAVELNKLEAEVVEFKAS---ILDKETELMSLTEQ 423
           +  E E  N      E  Q+  D  LA    K++    E   +     +  TEL  L  +
Sbjct: 361 LQIELERANAAASELEKKQKNFDKILAEWKRKVDELQAELDTAQREARNLSTELFRLKNE 420

Query: 424 NGMLKMEIENREMERNKVNDEAISLAEAARVAEREALMKVGFLTEEADKSSRRAARVTEQ 483
              LK ++E    E   + DE   L +      R           E +K+ RR      +
Sbjct: 421 LEELKDQVEALRRENKNLQDEIHDLTDQLGEGGRN--------VHELEKARRRLE---AE 469

Query: 484 LDAAQAASTEMEAELR 499
            D  QAA  E EA L 
Sbjct: 470 KDELQAALEEAEAALE 485

The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament. Length = 859

>gnl|CDD|225803 COG3264, COG3264, Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane]

 Score = 39.7 bits (93), Expect = 0.004
 Identities = 29/134 (21%), Positives = 60/134 (44%), Gaps = 11/134 (8%)

Query: 13  ERKSPRSPALEKQRPSRVSELESQLAQLQEDLKKAKEQLNASDS-------WKRRAQQEA 65
           E   P +   E Q      EL     QL + L +  E+LNA  S          +  Q +
Sbjct: 44  EEAEPAAEEAELQAELIQQELA-INDQLSQALNQQTERLNALASDDRQLANLLLQLLQSS 102

Query: 66  EEAKKQLSAMSARLEESQQQLLEI-TTSEDTRVEELRQLSQDRDK--AWQSELDAVQKQQ 122
              ++Q++ +   L  S+  L ++    E  + +E  +++Q+RD   A ++ ++A++ Q 
Sbjct: 103 RTIREQIAVLRGSLLLSRILLQQLGPLPEAGQPQEQFEVTQERDALQAEKAYINALEGQA 162

Query: 123 SMDSAALGSAMNEI 136
              +A +   +++I
Sbjct: 163 EQLTAEVRDILDQI 176

Length = 835

>gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional

 Score = 39.4 bits (93), Expect = 0.004
 Identities = 28/93 (30%), Positives = 50/93 (53%), Gaps = 7/93 (7%)

Query: 278 NEEIDKLKGELDLARNELRQLRSALDASETRYQEEYIQSTLQIRSAYEQLERAKSESSQR 337
            EEI KL+ E +    ELR+ R+ L   E R  ++  +  L  +   E LE+ + E  ++
Sbjct: 63  KEEIHKLRNEFE---KELRERRNELQKLEKRLLQK--EENLDRKL--ELLEKREEELEKK 115

Query: 338 EADLETELKNVKAQIEELRANLLDKETELQSIS 370
           E +LE + + ++ + EEL   + ++  EL+ IS
Sbjct: 116 EKELEQKQQELEKKEEELEELIEEQLQELERIS 148

Length = 520

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	578
KOG0161	1930	consensus Myosin class II heavy chain [Cytoskeleto	99.97
PF01576	859	Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu	99.96
PF05701	522	WEMBL: Weak chloroplast movement under blue light;	99.89
KOG0161	1930	consensus Myosin class II heavy chain [Cytoskeleto	99.85
PF01576	859	Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu	99.71
PRK02224	880	chromosome segregation protein; Provisional	99.38
PRK02224	880	chromosome segregation protein; Provisional	99.36
PF10174	775	Cast: RIM-binding protein of the cytomatrix active	99.17
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	99.14
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	99.12
PF10174	775	Cast: RIM-binding protein of the cytomatrix active	99.06
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	99.05
KOG4674	1822	consensus Uncharacterized conserved coiled-coil pr	99.04
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	98.97
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	98.92
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	98.91
PRK03918	880	chromosome segregation protein; Provisional	98.86
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	98.84
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	98.76
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	98.74
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	98.68
PF05701	522	WEMBL: Weak chloroplast movement under blue light;	98.67
PRK03918	880	chromosome segregation protein; Provisional	98.65
KOG4674	1822	consensus Uncharacterized conserved coiled-coil pr	98.65
PF00038	312	Filament: Intermediate filament protein; InterPro:	98.64
PF00038	312	Filament: Intermediate filament protein; InterPro:	98.58
KOG0977	546	consensus Nuclear envelope protein lamin, intermed	98.54
KOG0971	1243	consensus Microtubule-associated protein dynactin	98.46
KOG0971	1243	consensus Microtubule-associated protein dynactin	98.29
PF00261	237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	98.2
KOG0977	546	consensus Nuclear envelope protein lamin, intermed	98.12
PF00261	237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	98.05
PF12128	1201	DUF3584: Protein of unknown function (DUF3584); In	98.0
KOG4673	961	consensus Transcription factor TMF, TATA element m	97.86
KOG0994	1758	consensus Extracellular matrix glycoprotein Lamini	97.84
PF12128	1201	DUF3584: Protein of unknown function (DUF3584); In	97.84
PF05483	786	SCP-1: Synaptonemal complex protein 1 (SCP-1); Int	97.82
KOG0963	629	consensus Transcription factor/CCAAT displacement	97.82
KOG4643	1195	consensus Uncharacterized coiled-coil protein [Fun	97.72
PF05557	722	MAD: Mitotic checkpoint protein; InterPro: IPR0086	97.69
KOG4643	1195	consensus Uncharacterized coiled-coil protein [Fun	97.69
KOG0933	1174	consensus Structural maintenance of chromosome pro	97.65
KOG0976	1265	consensus Rho/Rac1-interacting serine/threonine ki	97.6
PHA02562	562	46 endonuclease subunit; Provisional	97.59
PRK04863	1486	mukB cell division protein MukB; Provisional	97.58
KOG0996	1293	consensus Structural maintenance of chromosome pro	97.57
PF15070	617	GOLGA2L5: Putative golgin subfamily A member 2-lik	97.55
PRK01156	895	chromosome segregation protein; Provisional	97.52
PF05667	594	DUF812: Protein of unknown function (DUF812); Inte	97.51
PRK04863	1486	mukB cell division protein MukB; Provisional	97.5
PRK01156	895	chromosome segregation protein; Provisional	97.5
PF05557	722	MAD: Mitotic checkpoint protein; InterPro: IPR0086	97.45
KOG0250	1074	consensus DNA repair protein RAD18 (SMC family pro	97.44
PF05483	786	SCP-1: Synaptonemal complex protein 1 (SCP-1); Int	97.44
KOG0996	1293	consensus Structural maintenance of chromosome pro	97.4
KOG1029	1118	consensus Endocytic adaptor protein intersectin [S	97.38
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	97.37
PRK11637	428	AmiB activator; Provisional	97.36
COG1579	239	Zn-ribbon protein, possibly nucleic acid-binding [	97.33
PHA02562	562	46 endonuclease subunit; Provisional	97.22
PF04849	306	HAP1_N: HAP1 N-terminal conserved region; InterPro	97.21
PF05622	713	HOOK: HOOK protein; InterPro: IPR008636 This famil	97.21
COG1579	239	Zn-ribbon protein, possibly nucleic acid-binding [	97.06
PF06160	560	EzrA: Septation ring formation regulator, EzrA ; I	97.05
COG4942	420	Membrane-bound metallopeptidase [Cell division and	97.03
PF05010	207	TACC: Transforming acidic coiled-coil-containing p	96.99
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	96.93
KOG0933	1174	consensus Structural maintenance of chromosome pro	96.91
KOG0995	581	consensus Centromere-associated protein HEC1 [Cell	96.88
PRK04778	569	septation ring formation regulator EzrA; Provision	96.85
TIGR02680	1353	conserved hypothetical protein TIGR02680. Members	96.8
PF12718	143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	96.78
KOG0612	1317	consensus Rho-associated, coiled-coil containing p	96.74
PF14915	305	CCDC144C: CCDC144C protein coiled-coil region	96.73
PF12718	143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	96.73
PF13514	1111	AAA_27: AAA domain	96.7
COG1340	294	Uncharacterized archaeal coiled-coil protein [Func	96.68
PF15619	194	Lebercilin: Ciliary protein causing Leber congenit	96.65
PRK04778	569	septation ring formation regulator EzrA; Provision	96.6
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	96.58
KOG0994	1758	consensus Extracellular matrix glycoprotein Lamini	96.49
KOG1029	1118	consensus Endocytic adaptor protein intersectin [S	96.48
PRK09039	343	hypothetical protein; Validated	96.46
PF05622	713	HOOK: HOOK protein; InterPro: IPR008636 This famil	96.3
KOG0250	1074	consensus DNA repair protein RAD18 (SMC family pro	96.11
PRK09039	343	hypothetical protein; Validated	95.95
KOG0995	581	consensus Centromere-associated protein HEC1 [Cell	95.87
PF15619	194	Lebercilin: Ciliary protein causing Leber congenit	95.85
KOG0980	980	consensus Actin-binding protein SLA2/Huntingtin-in	95.82
KOG0999	772	consensus Microtubule-associated protein Bicaudal-	95.55
KOG0964	1200	consensus Structural maintenance of chromosome pro	95.53
PF05667	594	DUF812: Protein of unknown function (DUF812); Inte	95.42
PF14662	193	CCDC155: Coiled-coil region of CCDC155	95.34
PF09728	309	Taxilin: Myosin-like coiled-coil protein; InterPro	95.24
PF09755	310	DUF2046: Uncharacterized conserved protein H4 (DUF	95.2
KOG0612	1317	consensus Rho-associated, coiled-coil containing p	95.01
PF15070	617	GOLGA2L5: Putative golgin subfamily A member 2-lik	94.87
KOG1003	205	consensus Actin filament-coating protein tropomyos	94.74
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	94.66
COG4942	420	Membrane-bound metallopeptidase [Cell division and	94.65
PF05911	769	DUF869: Plant protein of unknown function (DUF869)	94.64
KOG0964	1200	consensus Structural maintenance of chromosome pro	94.64
PF10473	140	CENP-F_leu_zip: Leucine-rich repeats of kinetochor	94.49
PF10498	359	IFT57: Intra-flagellar transport protein 57 ; Inte	94.49
COG3883	265	Uncharacterized protein conserved in bacteria [Fun	94.37
PF14662	193	CCDC155: Coiled-coil region of CCDC155	94.18
TIGR01843	423	type_I_hlyD type I secretion membrane fusion prote	93.92
COG5185	622	HEC1 Protein involved in chromosome segregation, i	93.88
PF09728	309	Taxilin: Myosin-like coiled-coil protein; InterPro	93.88
PF09730	717	BicD: Microtubule-associated protein Bicaudal-D; I	93.87
KOG4809	654	consensus Rab6 GTPase-interacting protein involved	93.83
smart00787	312	Spc7 Spc7 kinetochore protein. This domain is foun	93.69
COG4372	499	Uncharacterized protein conserved in bacteria with	93.69
PF06160	560	EzrA: Septation ring formation regulator, EzrA ; I	93.3
KOG0018	1141	consensus Structural maintenance of chromosome pro	93.11
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	93.04
TIGR03185	650	DNA_S_dndD DNA sulfur modification protein DndD. T	93.02
KOG4673	961	consensus Transcription factor TMF, TATA element m	92.62
PF11559	151	ADIP: Afadin- and alpha -actinin-Binding; InterPro	92.43
PF09787	511	Golgin_A5: Golgin subfamily A member 5; InterPro:	92.4
PF09730	717	BicD: Microtubule-associated protein Bicaudal-D; I	92.33
PF07111	739	HCR: Alpha helical coiled-coil rod protein (HCR);	92.11
PF07926	132	TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro:	91.64
PF00769	246	ERM: Ezrin/radixin/moesin family; InterPro: IPR011	91.48
PF05010	207	TACC: Transforming acidic coiled-coil-containing p	91.31
PF10498	359	IFT57: Intra-flagellar transport protein 57 ; Inte	91.02
PF10146	230	zf-C4H2: Zinc finger-containing protein ; InterPro	90.97
PF07926	132	TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro:	90.82
KOG0976	1265	consensus Rho/Rac1-interacting serine/threonine ki	90.76
PF10481	307	CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR0	90.7
KOG0978	698	consensus E3 ubiquitin ligase involved in syntaxin	90.66
PF12325	120	TMF_TATA_bd: TATA element modulatory factor 1 TATA	90.31
PF12325	120	TMF_TATA_bd: TATA element modulatory factor 1 TATA	90.04
KOG1003	205	consensus Actin filament-coating protein tropomyos	89.96
COG3883	265	Uncharacterized protein conserved in bacteria [Fun	89.9
PF04849	306	HAP1_N: HAP1 N-terminal conserved region; InterPro	89.81
PF11559	151	ADIP: Afadin- and alpha -actinin-Binding; InterPro	89.78
PF10481	307	CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR0	89.54
KOG0963	629	consensus Transcription factor/CCAAT displacement	89.4
KOG4593	716	consensus Mitotic checkpoint protein MAD1 [Cell cy	89.28
PF06008	264	Laminin_I: Laminin Domain I; InterPro: IPR009254 L	89.1
KOG0804	493	consensus Cytoplasmic Zn-finger protein BRAP2 (BRC	88.97
TIGR03185	650	DNA_S_dndD DNA sulfur modification protein DndD. T	88.7
KOG1937	521	consensus Uncharacterized conserved protein [Funct	88.51
TIGR01005	754	eps_transp_fam exopolysaccharide transport protein	88.41
PF09789	319	DUF2353: Uncharacterized coiled-coil protein (DUF2	88.01
PF08614	194	ATG16: Autophagy protein 16 (ATG16); InterPro: IPR	87.89
PF06818	202	Fez1: Fez1; InterPro: IPR009638 This family repres	87.85
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	87.72
PF10146	230	zf-C4H2: Zinc finger-containing protein ; InterPro	87.23
COG0419	908	SbcC ATPase involved in DNA repair [DNA replicatio	87.21
PF08614	194	ATG16: Autophagy protein 16 (ATG16); InterPro: IPR	87.08
PF05276	239	SH3BP5: SH3 domain-binding protein 5 (SH3BP5); Int	87.05
COG4372	499	Uncharacterized protein conserved in bacteria with	86.7
PF09755	310	DUF2046: Uncharacterized conserved protein H4 (DUF	85.89
COG2433	652	Uncharacterized conserved protein [Function unknow	85.88
TIGR03007	498	pepcterm_ChnLen polysaccharide chain length determ	85.53
PF04012	221	PspA_IM30: PspA/IM30 family; InterPro: IPR007157 T	84.97
TIGR00634	563	recN DNA repair protein RecN. All proteins in this	84.73
PF08826	61	DMPK_coil: DMPK coiled coil domain like; InterPro:	84.33
PRK10884	206	SH3 domain-containing protein; Provisional	84.23
KOG0018	1141	consensus Structural maintenance of chromosome pro	83.61
PF14915	305	CCDC144C: CCDC144C protein coiled-coil region	83.39
PF04111	314	APG6: Autophagy protein Apg6; InterPro: IPR007243	83.08
PF04156	191	IncA: IncA protein; InterPro: IPR007285 Chlamydia	82.92
PRK15422	79	septal ring assembly protein ZapB; Provisional	82.45
PF04111	314	APG6: Autophagy protein Apg6; InterPro: IPR007243	82.36
PF11932	251	DUF3450: Protein of unknown function (DUF3450); In	82.18
COG3074	79	Uncharacterized protein conserved in bacteria [Fun	81.77
PF06008	264	Laminin_I: Laminin Domain I; InterPro: IPR009254 L	81.67
TIGR01005	754	eps_transp_fam exopolysaccharide transport protein	81.29
KOG0980	980	consensus Actin-binding protein SLA2/Huntingtin-in	80.32
PF15066	527	CAGE1: Cancer-associated gene protein 1 family	80.16

>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]

Probab=99.97  E-value=2.4e-25  Score=267.50  Aligned_cols=474  Identities=21%  Similarity=0.291  Sum_probs=395.8

Q ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhhHh
Q 008082           27 PSRVSELESQLAQLQEDLKKAKEQLNASDSWKRRAQQEAEEAKKQLSAMSARLEESQQQLLEITTSEDTRVEELRQLSQD  106 (578)
Q Consensus        27 ~~~~~eLe~ql~~lqeeL~~eke~~~~~E~~k~~~~~ELe~~k~~~~el~~~Le~~~~~~~~~~e~ek~r~~El~kl~~~  106 (578)
                      ++.|++|+++|.+|.++|+.++..++++++.++++..++++       +..+|++..+++..+.++++++..++.+++++
T Consensus      1096 ~k~i~eL~~~i~el~e~le~er~~r~K~ek~r~dL~~ele~-------l~~~Lee~~~~t~~q~e~~~k~e~e~~~l~~~ 1168 (1930)
T KOG0161|consen 1096 QKQIKELEARIKELEEELEAERASRAKAERQRRDLSEELEE-------LKEELEEQGGTTAAQLELNKKREAEVQKLRRD 1168 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            68899999999999999999999999999999998877766       77888888999999999999999999999999


Q ss_pred             Hh---HhHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHH
Q 008082          107 RD---KAWQSELDAVQKQQSMDSAALGSAMNEIQRLKFQLE------------------KVAESEAAQTKHAESAYAEMQ  165 (578)
Q Consensus       107 ~e---~~~~~ele~~r~~~~~~~~~L~~~~~el~klr~qle------------------~~~~ak~~~~k~~~~le~el~  165 (578)
                      ++   ..++..+..+|+.|...++.|.++++++++.++.++                  ....++....+.++.+++++.
T Consensus      1169 leee~~~~e~~~~~lr~~~~~~~~el~~qle~l~~~k~~lekek~~lq~e~~~l~~ev~~~~~~k~~~e~~~k~~E~~l~ 1248 (1930)
T KOG0161|consen 1169 LEEETLDHEAQIEELRKKHADSLAELQEQLEQLQKDKAKLEKEKSDLQREIADLAAELEQLSSEKKDLEKKDKKLEAQLS 1248 (1930)
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHH
Confidence            98   338888999999999999999999999998888776                  466778888899999999999


Q ss_pred             HHHHHHHHHHH--------------HHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHhhhHHHH
Q 008082          166 NLRIELTETLS--------------LVEKLKNELSYCKESESQALEDVRKSQMQLETANANLE-------MLRSDGIKAT  224 (578)
Q Consensus       166 eL~~el~e~~~--------------eie~l~~~l~e~e~~~s~l~~~~~el~~qLEea~~~le-------~l~~e~~~l~  224 (578)
                      +++.++++...              ++..+.+++++.+..++.+.+....+..+|++++..++       .+.+.+..+.
T Consensus      1249 elq~k~~~~~~~~~~l~~q~~~l~~E~~~l~~~lee~e~~~~~~~r~~~~~~~qle~~k~qle~e~r~k~~l~~~l~~l~ 1328 (1930)
T KOG0161|consen 1249 ELQLKLDEQERLRNDLTAKRSRLQNENEELSRQLEEAEAKLSALSRDKQALESQLEELKRQLEEETREKSALENALRQLE 1328 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99977775433              66778888999999999999999999999999999887       5555667888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccccccccccchhHHHHHHHHHHHHHHHHHHH---HHH
Q 008082          225 EAYNTLSLELELSKARVKSLEELVSKLQNDLLNSSNKLAESMGDVHLSQKNGENEEIDKLKGELDLARNELRQL---RSA  301 (578)
Q Consensus       225 ~~~~~l~~eLe~~~~e~~~Le~ei~kL~~el~~~~~k~~~~e~~~~~~~~~e~~eei~eL~~el~~le~EieeL---~s~  301 (578)
                      ..++.+...+++-......|...+++++.++..|+.+++. .+..   ...+..+..+.+...+..++..++.+   ...
T Consensus      1329 ~e~~~l~e~leee~e~~~~l~r~lsk~~~e~~~~~~k~e~-~~~~---~~eelee~kk~l~~~lq~~qe~~e~~~~~~~~ 1404 (1930)
T KOG0161|consen 1329 HELDLLREQLEEEQEAKNELERKLSKANAELAQWKKKFEE-EVLQ---RLEELEELKKKLQQRLQELEEQIEAANAKNAS 1404 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH---HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence            8888888889988888999999999999999999998853 1110   01133344666677777777777776   478


Q ss_pred             HHHHHHHHHHHHHHhHHHHHHH---HHHHHHHhhhhhHhHHhHHHHHHHHHHHHHHHHHHhHhHHHHHhhHH--------
Q 008082          302 LDASETRYQEEYIQSTLQIRSA---YEQLERAKSESSQREADLETELKNVKAQIEELRANLLDKETELQSIS--------  370 (578)
Q Consensus       302 LE~aE~~lqeE~~~~~~el~~~---~e~l~~~k~E~~qr~~el~~el~~~~~eleel~~~l~d~E~eL~~L~--------  370 (578)
                      |+.+..+|+.+..++++++.+.   ...++......+..+++.....+.+..+++..+...+..+++++.+.        
T Consensus      1405 Lek~k~~l~~el~d~~~d~~~~~~~~~~le~k~k~f~k~l~e~k~~~e~l~~Eld~aq~e~r~~~tel~kl~~~lee~~e 1484 (1930)
T KOG0161|consen 1405 LEKAKNRLQQELEDLQLDLERSRAAVAALEKKQKRFEKLLAEWKKKLEKLQAELDAAQRELRQLSTELQKLKNALEELLE 1484 (1930)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence            8889999999999999888766   45555555566667777777888888888888888888888877766        


Q ss_pred             ------HHHHhHHHHhccc-----ccccchHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008082          371 ------EENEGLNLKIKTN-----ESNQRDSKLAVELNKLEAEVVEFKASILDKETELMSLTEQNGMLKMEIENREMERN  439 (578)
Q Consensus       371 ------ee~~~L~~ei~e~-----~~~k~~~El~k~~kkle~e~~eLk~~L~e~E~~lq~~~~E~~~lk~~i~~~~~e~~  439 (578)
                            ++|+.|..+|.++     ++|+++|++++.++.++.++.+|+++|+|+++.++..  +...++.+++     ++
T Consensus      1485 ~~e~l~renk~l~~ei~dl~~~~~e~~k~v~elek~~r~le~e~~elQ~aLeElE~~le~e--E~~~lr~~~~-----~~ 1557 (1930)
T KOG0161|consen 1485 QLEELRRENKNLSQEIEDLEEQKDEGGKRVHELEKEKRRLEQEKEELQAALEELEAALEAE--EDKKLRLQLE-----LQ 1557 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh--hhHHHHHHHH-----HH
Confidence                  3788888888775     8999999999999999999999999999999999998  8888887777     77


Q ss_pred             hhHHHHHHHH----HHHHHHHHHHHHHHhhHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 008082          440 KVNDEAISLA----EAARVAEREALMKVGFLTEEADKSSRR--------------AARVTEQLDAAQAASTEMEAELRKL  501 (578)
Q Consensus       440 ~~~~e~~~~l----e~a~~~~~~~~~kl~~l~~ele~~~~~--------------~~~l~eql~~ae~~~~~lEaEL~kl  501 (578)
                      +++.++.+.+    +.+...++.++..+..++..++...+.              +.++..+++++++++..+...|+++
T Consensus      1558 ~~r~e~er~l~ek~Ee~E~~rk~~~~~i~~~q~~Le~E~r~k~e~~r~KKkle~di~elE~~ld~ank~~~d~~K~lkk~ 1637 (1930)
T KOG0161|consen 1558 QLRSEIERRLQEKDEEIEELRKNLQRQLESLQAELEAETRSKSEALRSKKKLEGDINELEIQLDHANKANEDAQKQLKKL 1637 (1930)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHHhhHHHHHHHHhh
Confidence            7777777777    788899999999999999999987311              3355789999999999999999888


Q ss_pred             HH-------hHHHHHHHHHHHHhh
Q 008082          502 KV-------QSDQWRKAAEAATAM  518 (578)
Q Consensus       502 r~-------q~eq~RkaaE~~~~~  518 (578)
                      +.       +.+..+++.+...+.
T Consensus      1638 q~~~k~lq~~~e~~~~~~~e~~~q 1661 (1930)
T KOG0161|consen 1638 QAQLKELQRELEDAQRAREELLEQ 1661 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            73       555666666655544

>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril

Probab=99.96  E-value=1.4e-30  Score=302.24  Aligned_cols=472  Identities=21%  Similarity=0.285  Sum_probs=0.0

Q ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhhHh
Q 008082           27 PSRVSELESQLAQLQEDLKKAKEQLNASDSWKRRAQQEAEEAKKQLSAMSARLEESQQQLLEITTSEDTRVEELRQLSQD  106 (578)
Q Consensus        27 ~~~~~eLe~ql~~lqeeL~~eke~~~~~E~~k~~~~~ELe~~k~~~~el~~~Le~~~~~~~~~~e~ek~r~~El~kl~~~  106 (578)
                      .++|++|+++|.+|+++|+.++..++++++.|+++..||+.       |...|+++.+.+..++++.++|..||.+|+++
T Consensus        38 ~k~~kelq~~i~el~eeLe~Er~~R~kaek~r~dL~~ELe~-------l~~~Lee~~~~t~aq~E~~kkrE~El~~Lrr~  110 (859)
T PF01576_consen   38 QKKIKELQARIEELEEELESERQARAKAEKQRRDLSEELEE-------LKERLEEAGGATQAQIELNKKREAELAKLRRD  110 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHhhCcHHhhHHHHHHHHHHHHHHHHH
Confidence            58999999999999999999999999999999998766665       99999999999999999999999999999999


Q ss_pred             Hh---HhHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHH
Q 008082          107 RD---KAWQSELDAVQKQQSMDSAALGSAMNEIQRLKFQLE------------------KVAESEAAQTKHAESAYAEMQ  165 (578)
Q Consensus       107 ~e---~~~~~ele~~r~~~~~~~~~L~~~~~el~klr~qle------------------~~~~ak~~~~k~~~~le~el~  165 (578)
                      ++   ..|+..+..||++|...+++|..+++.+++.++.++                  .+..++..+.+.++.+++++.
T Consensus       111 LEe~~~~~e~~~~~lrkkh~~~~~eL~eqle~lqk~k~~lEK~k~~l~~e~~dL~~~l~~~~k~k~~~Ek~~K~lE~qL~  190 (859)
T PF01576_consen  111 LEEANLQHEATLAELRKKHQDAVAELNEQLEQLQKQKAKLEKEKSQLEAELDDLQAQLDSLQKAKQEAEKKRKQLEAQLN  190 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHH
Confidence            98   338889999999999999999999998888777666                  788999999999999999999


Q ss_pred             HHHHHHHHH--------------HHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHhhhHHHH
Q 008082          166 NLRIELTET--------------LSLVEKLKNELSYCKESESQALEDVRKSQMQLETANANLE-------MLRSDGIKAT  224 (578)
Q Consensus       166 eL~~el~e~--------------~~eie~l~~~l~e~e~~~s~l~~~~~el~~qLEea~~~le-------~l~~e~~~l~  224 (578)
                      +++..+++.              ..++.+|..++++.+..++.+.+....+..+|++++..++       .|...+..+.
T Consensus       191 El~~klee~er~~~el~~~k~kL~~E~~eL~~qLee~e~~~~~l~r~k~~L~~qLeelk~~leeEtr~k~~L~~~l~~le  270 (859)
T PF01576_consen  191 ELQAKLEESERQRNELTEQKAKLQSENSELTRQLEEAESQLSQLQREKSSLESQLEELKRQLEEETRAKQALEKQLRQLE  270 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHhhhhhhhHHHHHHHH
Confidence            999777643              3478889999999999999999999999999999999987       4445566667


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccccccccccchhHHHHHHHHHHHHHHHHHHHH---HH
Q 008082          225 EAYNTLSLELELSKARVKSLEELVSKLQNDLLNSSNKLAESMGDVHLSQKNGENEEIDKLKGELDLARNELRQLR---SA  301 (578)
Q Consensus       225 ~~~~~l~~eLe~~~~e~~~Le~ei~kL~~el~~~~~k~~~~e~~~~~~~~~e~~eei~eL~~el~~le~EieeL~---s~  301 (578)
                      ..+..+...++.-......|+..|++++.++..|+.+++. ++.....   ...+-...|...+..+...++.+.   +.
T Consensus       271 ~e~~~L~eqleeE~e~k~~l~~qlsk~~~El~~~k~K~e~-e~~~~~E---elEeaKKkL~~~L~el~e~le~~~~~~~~  346 (859)
T PF01576_consen  271 HELEQLREQLEEEEEAKSELERQLSKLNAELEQWKKKYEE-EAEQRTE---ELEEAKKKLERKLQELQEQLEEANAKVSS  346 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHH-HhhhhHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7777777777777777789999999999999999999864 1110000   111225566777777777777774   77


Q ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHH---HHhhhhhHhHHhHHHHHHHHHHHHHHHHHHhHhHHHHHhhHH--------
Q 008082          302 LDASETRYQEEYIQSTLQIRSAYEQLE---RAKSESSQREADLETELKNVKAQIEELRANLLDKETELQSIS--------  370 (578)
Q Consensus       302 LE~aE~~lqeE~~~~~~el~~~~e~l~---~~k~E~~qr~~el~~el~~~~~eleel~~~l~d~E~eL~~L~--------  370 (578)
                      |+.+..+|+.++.++++++.+......   .....++.-++++...+..+..+++.+........++++.|.        
T Consensus       347 LeK~k~rL~~EleDl~~eLe~~~~~~~~LeKKqr~fDk~l~e~k~~~~~~~~e~d~~q~e~r~~~te~~~Lk~~lee~~e  426 (859)
T PF01576_consen  347 LEKTKKRLQGELEDLTSELEKAQAAAAELEKKQRKFDKQLAEWKAKVEELQAERDAAQREARELETELFKLKNELEELQE  426 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhHHHHH
Confidence            788888999999999988776653332   222233333334445555555566666666666665555554        


Q ss_pred             ------HHHHhHHHHhccc-----ccccchHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008082          371 ------EENEGLNLKIKTN-----ESNQRDSKLAVELNKLEAEVVEFKASILDKETELMSLTEQNGMLKMEIENREMERN  439 (578)
Q Consensus       371 ------ee~~~L~~ei~e~-----~~~k~~~El~k~~kkle~e~~eLk~~L~e~E~~lq~~~~E~~~lk~~i~~~~~e~~  439 (578)
                            ++|+.|..+|.++     ++|+++|+|.+.++.|+.++.+++.+|+|.++.|+..  +...++.+++     ++
T Consensus       427 ~~e~lere~k~L~~El~dl~~q~~~~~k~v~eLek~kr~LE~e~~El~~~leE~E~~l~~~--E~~~lRl~~e-----l~  499 (859)
T PF01576_consen  427 QLEELERENKQLQDELEDLTSQLDDAGKSVHELEKAKRRLEQEKEELQEQLEEAEDALEAE--EQKKLRLQVE-----LQ  499 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHhhccchhhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH-----HH
Confidence                  5888888888875     7899999999999999999999999999999999998  8888888887     88


Q ss_pred             hhHHHHHHHH----HHHHHHHHHHHHHHhhHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008082          440 KVNDEAISLA----EAARVAEREALMKVGFLTEEADKSS--------------RRAARVTEQLDAAQAASTEMEAELRKL  501 (578)
Q Consensus       440 ~~~~e~~~~l----e~a~~~~~~~~~kl~~l~~ele~~~--------------~~~~~l~eql~~ae~~~~~lEaEL~kl  501 (578)
                      +++.++.+.|    +.+...++.++.+|+.|+.+|+...              ..+.++..++++++..+..+...++++
T Consensus       500 ~~r~e~er~l~eKeeE~E~~Rr~~qr~l~~le~~LE~E~k~r~~~~r~kkKLE~~l~eLe~~ld~~n~~~~e~~k~~kk~  579 (859)
T PF01576_consen  500 QLRQEIERELQEKEEEFEETRRNHQRQLESLEAELEEERKERAEALREKKKLESDLNELEIQLDHANRANEEAQKQLKKL  579 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHhhhhHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHH
Confidence            8888888887    7888889999999999999998862              233445788899998888888888887


Q ss_pred             HH-------hHHHHHHHHHHHH
Q 008082          502 KV-------QSDQWRKAAEAAT  516 (578)
Q Consensus       502 r~-------q~eq~RkaaE~~~  516 (578)
                      +.       +.+..++..+...
T Consensus       580 q~qlkdlq~~lee~~~~~~~~~  601 (859)
T PF01576_consen  580 QAQLKDLQRELEEAQRAREELR  601 (859)
T ss_dssp             ----------------------
T ss_pred             HHHHHHHhhhhHHHHHHHHHHH
Confidence            74       4455454444433

Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.

>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function

Probab=99.89  E-value=6.3e-17  Score=179.58  Aligned_cols=223  Identities=28%  Similarity=0.351  Sum_probs=172.1

Q ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhhhhhHHHHHHHh
Q 008082           27 PSRVSELESQLAQLQEDLKKAKEQLNASDSWKRRAQQEAEEAKKQLSAMSARLEE---SQQQLLEITTSEDTRVEELRQL  103 (578)
Q Consensus        27 ~~~~~eLe~ql~~lqeeL~~eke~~~~~E~~k~~~~~ELe~~k~~~~el~~~Le~---~~~~~~~~~e~ek~r~~El~kl  103 (578)
                      +-+....+.+|+.++++|.+.+.++..+++.|.++..||+.+|+.+++|+.+|+.   +..++...+++.+.|..++.+-
T Consensus        26 ~e~~~~~e~eL~~~qeel~~~k~~l~~~E~~k~~~l~ELe~akr~veel~~kLe~~~~~~~~a~~~~e~~k~r~~e~e~~  105 (522)
T PF05701_consen   26 LERVKEKETELEKAQEELAKLKEQLEAAEREKAQALSELESAKRTVEELKLKLEKAQAEEKQAEEDSELAKFRAKELEQG  105 (522)
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHhhh
Confidence            4678889999999999999999999999999999999999999999999999997   5578888999999999999663


Q ss_pred             hHh-HhHhHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008082          104 SQD-RDKAWQSELDAVQKQQSMDSAALGSAMNEIQRLKFQLEKVAESEAAQTKHAESAYAEMQNLRIELTETLSLVEKLK  182 (578)
Q Consensus       104 ~~~-~e~~~~~ele~~r~~~~~~~~~L~~~~~el~klr~qle~~~~ak~~~~k~~~~le~el~eL~~el~e~~~eie~l~  182 (578)
                      ... ....|+.+|+.++.+|..++.+|....+||.++|..|..+..++..++++++.+..-.......+.++..+|..++
T Consensus       106 ~~~~~~~~~k~ele~~~~q~~~~~~eL~~~k~EL~~lr~e~~~~~~~k~~A~~~aeea~~~a~~~~~kve~L~~Ei~~lk  185 (522)
T PF05701_consen  106 IAEEASVAWKAELESAREQYASAVAELDSVKQELEKLRQELASALDAKNAALKQAEEAVSAAEENEEKVEELSKEIIALK  185 (522)
T ss_pred             hcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            332 3355999999999999999999999999999999999999999999999999998766555555555555555555


Q ss_pred             HHHhHhHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008082          183 NELSYCKESES-----------QALEDVRKSQMQLETANANLEMLRSDGIKATEAYNTLSLELELSKARVKSLEELVSKL  251 (578)
Q Consensus       183 ~~l~e~e~~~s-----------~l~~~~~el~~qLEea~~~le~l~~e~~~l~~~~~~l~~eLe~~~~e~~~Le~ei~kL  251 (578)
                      ..+........           .....+..|...|+.+...+..|..++    .....+...|+.....+..|..++...
T Consensus       186 e~l~~~~~a~~eAeee~~~~~~~~~~~~~~~~~~leeae~~l~~L~~e~----~~~k~Le~kL~~a~~~l~~Lq~El~~~  261 (522)
T PF05701_consen  186 ESLESAKLAHIEAEEERIEIAAEREQDAEEWEKELEEAEEELEELKEEL----EAAKDLESKLAEASAELESLQAELEAA  261 (522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55444332222           223455666667777777777776665    333444445555555555555555544


Q ss_pred             HH
Q 008082          252 QN  253 (578)
Q Consensus       252 ~~  253 (578)
                      ..
T Consensus       262 ~~  263 (522)
T PF05701_consen  262 KE  263 (522)
T ss_pred             HH
Confidence            43

Several sequences in this family are described as being myosin heavy chain-like.

>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]

Probab=99.85  E-value=7e-16  Score=186.71  Aligned_cols=437  Identities=23%  Similarity=0.276  Sum_probs=318.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhhhhhHHHHHHHhhHhH
Q 008082           31 SELESQLAQLQEDLKKAKEQLNASDSWKRRAQQEAEEAKKQLSAMSARLEE---SQQQLLEITTSEDTRVEELRQLSQDR  107 (578)
Q Consensus        31 ~eLe~ql~~lqeeL~~eke~~~~~E~~k~~~~~ELe~~k~~~~el~~~Le~---~~~~~~~~~e~ek~r~~El~kl~~~~  107 (578)
                      +-+++++.+++..+.....+++..-..+..+..|+..+.+++++....+..   .......+++-.+..+.+-.+-+..+
T Consensus      1241 k~~E~~l~elq~k~~~~~~~~~~l~~q~~~l~~E~~~l~~~lee~e~~~~~~~r~~~~~~~qle~~k~qle~e~r~k~~l 1320 (1930)
T KOG0161|consen 1241 KKLEAQLSELQLKLDEQERLRNDLTAKRSRLQNENEELSRQLEEAEAKLSALSRDKQALESQLEELKRQLEEETREKSAL 1320 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            567788888888888888877777777777777776666666655544333   22222333333232222222222222


Q ss_pred             h---HhHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHH-----------------------------HHHHHHHHHHH
Q 008082          108 D---KAWQSELDAVQKQQSMDSAALGSAMNEIQRLKFQLE-----------------------------KVAESEAAQTK  155 (578)
Q Consensus       108 e---~~~~~ele~~r~~~~~~~~~L~~~~~el~klr~qle-----------------------------~~~~ak~~~~k  155 (578)
                      .   ..++.+...++.++..+...++...-++.++.+++-                             .+...-..+..
T Consensus      1321 ~~~l~~l~~e~~~l~e~leee~e~~~~l~r~lsk~~~e~~~~~~k~e~~~~~~~eelee~kk~l~~~lq~~qe~~e~~~~ 1400 (1930)
T KOG0161|consen 1321 ENALRQLEHELDLLREQLEEEQEAKNELERKLSKANAELAQWKKKFEEEVLQRLEELEELKKKLQQRLQELEEQIEAANA 1400 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            2   114444555555555555544444443333333222                             11111111111


Q ss_pred             HHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 008082          156 HAESAY-------AEMQNLRIELTETLSLVEKLKNELSYCKESESQALEDVRKSQMQLETANANLEMLRSDGIKATEAYN  228 (578)
Q Consensus       156 ~~~~le-------~el~eL~~el~e~~~eie~l~~~l~e~e~~~s~l~~~~~el~~qLEea~~~le~l~~e~~~l~~~~~  228 (578)
                      .+..++       .++..+..++......+..+..+....+..++.|....+.+...++.++.+...+.+++..+...++
T Consensus      1401 ~~~~Lek~k~~l~~el~d~~~d~~~~~~~~~~le~k~k~f~k~l~e~k~~~e~l~~Eld~aq~e~r~~~tel~kl~~~le 1480 (1930)
T KOG0161|consen 1401 KNASLEKAKNRLQQELEDLQLDLERSRAAVAALEKKQKRFEKLLAEWKKKLEKLQAELDAAQRELRQLSTELQKLKNALE 1480 (1930)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            122222       2222222333333344566677777778888888888999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008082          229 TLSLELELSKARVKSLEELVSKLQNDLLNSSNKLAESMGDVHLSQKNGENEEIDKLKGELDLARNELRQLRSALDASETR  308 (578)
Q Consensus       229 ~l~~eLe~~~~e~~~Le~ei~kL~~el~~~~~k~~~~e~~~~~~~~~e~~eei~eL~~el~~le~EieeL~s~LE~aE~~  308 (578)
                      .+...+++++++++.+..+|.++...+.+. ++.                  +++|++.+..++.++.+|+.+|++++..
T Consensus      1481 e~~e~~e~l~renk~l~~ei~dl~~~~~e~-~k~------------------v~elek~~r~le~e~~elQ~aLeElE~~ 1541 (1930)
T KOG0161|consen 1481 ELLEQLEELRRENKNLSQEIEDLEEQKDEG-GKR------------------VHELEKEKRRLEQEKEELQAALEELEAA 1541 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999988887 332                  9999999999999999999999999999


Q ss_pred             HH-HHHHHhHHHHHHHHHHHHHHhhhhhHhHHhHHHHHHHH----HHHHHHHHHHhHhHHHHHhh-HHHHHHhHHHHhcc
Q 008082          309 YQ-EEYIQSTLQIRSAYEQLERAKSESSQREADLETELKNV----KAQIEELRANLLDKETELQS-ISEENEGLNLKIKT  382 (578)
Q Consensus       309 lq-eE~~~~~~el~~~~e~l~~~k~E~~qr~~el~~el~~~----~~eleel~~~l~d~E~eL~~-L~ee~~~L~~ei~e  382 (578)
                      ++ ++..++++++.     +.++++++++++.+...+++..    ...++.++..+ +.|++.++ +..-.++|..+|++
T Consensus      1542 le~eE~~~lr~~~~-----~~~~r~e~er~l~ek~Ee~E~~rk~~~~~i~~~q~~L-e~E~r~k~e~~r~KKkle~di~e 1615 (1930)
T KOG0161|consen 1542 LEAEEDKKLRLQLE-----LQQLRSEIERRLQEKDEEIEELRKNLQRQLESLQAEL-EAETRSKSEALRSKKKLEGDINE 1615 (1930)
T ss_pred             hhhhhhHHHHHHHH-----HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhh-hHHHHHHHHHHhhhhhhhcchHH
Confidence            98 77777788877     8999999999999888777766    45567788855 68888777 55677788888887


Q ss_pred             c-----ccccchHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 008082          383 N-----ESNQRDSKLAVELNKLEAEVVEFKASILDKETELMSLTEQNGMLKMEIENREMERNKVNDEAISLAEAARVAER  457 (578)
Q Consensus       383 ~-----~~~k~~~El~k~~kkle~e~~eLk~~L~e~E~~lq~~~~E~~~lk~~i~~~~~e~~~~~~e~~~~le~a~~~~~  457 (578)
                      +     ++|+...++.+.++++...+.+|+..+++.-+..+.+..+...+.+++..+.++    ..++...++.+.+++ 
T Consensus      1616 lE~~ld~ank~~~d~~K~lkk~q~~~k~lq~~~e~~~~~~~e~~~q~~~aerr~~~l~~E----~eeL~~~l~~~~Rar- 1690 (1930)
T KOG0161|consen 1616 LEIQLDHANKANEDAQKQLKKLQAQLKELQRELEDAQRAREELLEQLAEAERRLAALQAE----LEELREKLEALERAR- 1690 (1930)
T ss_pred             HHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH-
Confidence            4     889999999999999999999999999999999999999999999999977777    677778888888887 


Q ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008082          458 EALMKVGFLTEEADKSSRRAARVTEQLDAAQAASTEMEAELRKLKV  503 (578)
Q Consensus       458 ~~~~kl~~l~~ele~~~~~~~~l~eql~~ae~~~~~lEaEL~klr~  503 (578)
                            +.++.++++....+..+..+....-..+..|+++|..|+.
T Consensus      1691 ------r~aE~e~~E~~e~i~~~~~~~s~l~~~KrklE~~i~~l~~ 1730 (1930)
T KOG0161|consen 1691 ------RQAELELEELAERVNELNAQNSSLTAEKRKLEAEIAQLQS 1730 (1930)
T ss_pred             ------HhhHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHH
Confidence                  6677788888888888888888888888888888888874

>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril

Probab=99.71  E-value=9.9e-19  Score=203.71  Aligned_cols=314  Identities=20%  Similarity=0.248  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008082          173 ETLSLVEKLKNELSYCKESESQALEDVRKSQMQLETANANLEMLRSD-------GIKATEAYNTLSLELELSKARVKSLE  245 (578)
Q Consensus       173 e~~~eie~l~~~l~e~e~~~s~l~~~~~el~~qLEea~~~le~l~~e-------~~~l~~~~~~l~~eLe~~~~e~~~Le  245 (578)
                      ++...++.++..+..++....+++..+..+...|+..+..+..|.+.       +..|...+..+..+++.+..+...+.
T Consensus       332 el~e~le~~~~~~~~LeK~k~rL~~EleDl~~eLe~~~~~~~~LeKKqr~fDk~l~e~k~~~~~~~~e~d~~q~e~r~~~  411 (859)
T PF01576_consen  332 ELQEQLEEANAKVSSLEKTKKRLQGELEDLTSELEKAQAAAAELEKKQRKFDKQLAEWKAKVEELQAERDAAQREARELE  411 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence            33334444555555555555555555555555555555444433332       23333344444444444444555555


Q ss_pred             HHHHHHHHHHHhhh---------hhhhhccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Q 008082          246 ELVSKLQNDLLNSS---------NKLAESMGDVHLSQKNGENEEIDKLKGELDLARNELRQLRSALDASETRYQ-EEYIQ  315 (578)
Q Consensus       246 ~ei~kL~~el~~~~---------~k~~~~e~~~~~~~~~e~~eei~eL~~el~~le~EieeL~s~LE~aE~~lq-eE~~~  315 (578)
                      .+|..|...+....         ++...+++.++.+++.+.+..+|+|.+.+..|+.++.+++..|+++++.++ .+...
T Consensus       412 te~~~Lk~~lee~~e~~e~lere~k~L~~El~dl~~q~~~~~k~v~eLek~kr~LE~e~~El~~~leE~E~~l~~~E~~~  491 (859)
T PF01576_consen  412 TELFKLKNELEELQEQLEELERENKQLQDELEDLTSQLDDAGKSVHELEKAKRRLEQEKEELQEQLEEAEDALEAEEQKK  491 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhccchhhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55555554443333         122333444444455555666999999999999999999999999999998 66777


Q ss_pred             hHHHHHHHHHHHHHHhhhhhHhHHhHHHHHHHH----HHHHHHHHHHhHhHHHHHhh-HHHHHHhHHHHhccc-----cc
Q 008082          316 STLQIRSAYEQLERAKSESSQREADLETELKNV----KAQIEELRANLLDKETELQS-ISEENEGLNLKIKTN-----ES  385 (578)
Q Consensus       316 ~~~el~~~~e~l~~~k~E~~qr~~el~~el~~~----~~eleel~~~l~d~E~eL~~-L~ee~~~L~~ei~e~-----~~  385 (578)
                      +++++.     +.+++.++.+++.+.+.+++.+    ...|..++..| +.|.+.++ +...++.|..+|.++     .+
T Consensus       492 lRl~~e-----l~~~r~e~er~l~eKeeE~E~~Rr~~qr~l~~le~~L-E~E~k~r~~~~r~kkKLE~~l~eLe~~ld~~  565 (859)
T PF01576_consen  492 LRLQVE-----LQQLRQEIERELQEKEEEFEETRRNHQRQLESLEAEL-EEERKERAEALREKKKLESDLNELEIQLDHA  565 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHH-----HHHHHHHHHHHHHhhhhHHHHHHHhhHHHHHHHHhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            788877     9999999999999888888777    67788888888 67777666 778999999999986     78


Q ss_pred             ccchHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 008082          386 NQRDSKLAVELNKLEAEVVEFKASILDKETELMSLTEQNGMLKMEIENREMERNKVNDEAISLAEAARVAEREALMKVGF  465 (578)
Q Consensus       386 ~k~~~El~k~~kkle~e~~eLk~~L~e~E~~lq~~~~E~~~lk~~i~~~~~e~~~~~~e~~~~le~a~~~~~~~~~kl~~  465 (578)
                      |+...++.+.++++...+.+|+..|++.......+...+..+.+++..+.++    .+++...++.+.+++       +.
T Consensus       566 n~~~~e~~k~~kk~q~qlkdlq~~lee~~~~~~~~~~~~~~~e~r~~~l~~e----lee~~~~~~~a~r~r-------k~  634 (859)
T PF01576_consen  566 NRANEEAQKQLKKLQAQLKDLQRELEEAQRAREELREQLAVSERRLRALQAE----LEELREALEQAERAR-------KQ  634 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             hHhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH-------HH
Confidence            9999999999999999999999999999999999988888888888866666    667777777777777       56


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008082          466 LTEEADKSSRRAARVTEQLDAAQAASTEMEAELRKLKV  503 (578)
Q Consensus       466 l~~ele~~~~~~~~l~eql~~ae~~~~~lEaEL~klr~  503 (578)
                      ++.++++....+..+..+.......+..|++++..|..
T Consensus       635 aE~el~e~~~~~~~l~~~~~~l~~~kr~le~~i~~l~~  672 (859)
T PF01576_consen  635 AESELDELQERLNELTSQNSSLSEEKRKLEAEIQQLEE  672 (859)
T ss_dssp             --------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Confidence            67777777777777777777777777777777777774

Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.

>PRK02224 chromosome segregation protein; Provisional

Probab=99.38  E-value=4.6e-06  Score=99.14  Aligned_cols=30  Identities=30%  Similarity=0.440  Sum_probs=15.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHhHHHHHHHH
Q 008082          390 SKLAVELNKLEAEVVEFKASILDKETELMSL  420 (578)
Q Consensus       390 ~El~k~~kkle~e~~eLk~~L~e~E~~lq~~  420 (578)
                      .++...+.+++ ++.++...+.+.+..+..+
T Consensus       582 ~~l~~~~~~le-~~~~~~~~i~~~~~~~~~~  611 (880)
T PRK02224        582 AELKERIESLE-RIRTLLAAIADAEDEIERL  611 (880)
T ss_pred             HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence            45555555555 4555555555444444433

>PRK02224 chromosome segregation protein; Provisional

Probab=99.36  E-value=5.9e-06  Score=98.25  Aligned_cols=67  Identities=13%  Similarity=0.079  Sum_probs=37.2

Q ss_pred             HHhhHHHHHHhHHHHhcccccccchHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHH
Q 008082          365 ELQSISEENEGLNLKIKTNESNQRDSKLAVELNKLEAEVVEFKASILDKETELMSLTEQNGMLKMEIENR  434 (578)
Q Consensus       365 eL~~L~ee~~~L~~ei~e~~~~k~~~El~k~~kkle~e~~eLk~~L~e~E~~lq~~~~E~~~lk~~i~~~  434 (578)
                      ++..+......+..++..+.   ...++...+..++.++.+++..+.+.+.....+..+...++.++..+
T Consensus       573 ~~~~~~~~~~~l~~~~~~le---~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~r~~i~~l  639 (880)
T PRK02224        573 EVAELNSKLAELKERIESLE---RIRTLLAAIADAEDEIERLREKREALAELNDERRERLAEKRERKREL  639 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33334444444444443332   14566666666666666666666666665556666666666666554

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []

Probab=99.17  E-value=3.8e-05  Score=88.55  Aligned_cols=68  Identities=24%  Similarity=0.379  Sum_probs=45.7

Q ss_pred             CCCCCCccccCcchhhH-HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008082           16 SPRSPALEKQRPSRVSE-LESQLAQLQEDLKKAKEQLNASDSWKRRAQQEAEEAKKQLSAMSARLEESQQQL   86 (578)
Q Consensus        16 ~~~~~~~~~~~~~~~~e-Le~ql~~lqeeL~~eke~~~~~E~~k~~~~~ELe~~k~~~~el~~~Le~~~~~~   86 (578)
                      .|-||-.  +|.+.+.. -.+++.-++++|........++..+-..++.+| .+..++..+...++.+....
T Consensus        35 ~fwspEl--krer~~rkee~a~l~~~k~qlr~~q~e~q~~~~ei~~LqeEL-r~q~e~~rL~~~~e~~~~e~  103 (775)
T PF10174_consen   35 TFWSPEL--KRERALRKEEAAELSRLKEQLRVTQEENQKAQEEIQALQEEL-RAQRELNRLQQELEKAQYEF  103 (775)
T ss_pred             cccchhh--HHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHH-HHhhHHHHHHHHhhhccccc
Confidence            3445544  55554444 346677777777777766667778888888888 88888777777776654433

Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].

>TIGR00606 rad50 rad50

Probab=99.14  E-value=8.4e-05  Score=91.96  Aligned_cols=26  Identities=12%  Similarity=0.198  Sum_probs=11.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008082          281 IDKLKGELDLARNELRQLRSALDASE  306 (578)
Q Consensus       281 i~eL~~el~~le~EieeL~s~LE~aE  306 (578)
                      ...|+..+..+..++..+...+..++
T Consensus       883 r~~le~~L~el~~el~~l~~~~~~~~  908 (1311)
T TIGR00606       883 RQQFEEQLVELSTEVQSLIREIKDAK  908 (1311)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444444444444444333

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=99.12  E-value=1.3e-05  Score=97.57  Aligned_cols=35  Identities=9%  Similarity=0.196  Sum_probs=26.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008082          468 EEADKSSRRAARVTEQLDAAQAASTEMEAELRKLK  502 (578)
Q Consensus       468 ~ele~~~~~~~~l~eql~~ae~~~~~lEaEL~klr  502 (578)
                      .+++....+...+..++..+......+..-+..|.
T Consensus       979 ~~~~~~~~~~~~l~~q~~dl~~~~~~l~~~i~~l~ 1013 (1164)
T TIGR02169       979 QEYEEVLKRLDELKEKRAKLEEERKAILERIEEYE 1013 (1164)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56666667777778888888888888888887766

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []

Probab=99.06  E-value=0.00011  Score=84.73  Aligned_cols=235  Identities=24%  Similarity=0.318  Sum_probs=120.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHH
Q 008082          134 NEIQRLKFQLEKVAESEAAQTKHAESAYA-------EMQNLRIELTETLSLVEKLKNELSYCKESESQALEDVRKSQMQL  206 (578)
Q Consensus       134 ~el~klr~qle~~~~ak~~~~k~~~~le~-------el~eL~~el~e~~~eie~l~~~l~e~e~~~s~l~~~~~el~~qL  206 (578)
                      ++|..+++.++.+..-+..-.+..+....       .+..+..+|.....++..+..++..+.........-|..+...|
T Consensus       252 ~Ei~~L~~~~~~~~~~r~~~~k~le~~~s~~~~mK~k~d~~~~eL~rk~~E~~~~qt~l~~~~~~~~d~r~hi~~lkesl  331 (775)
T PF10174_consen  252 DEIYRLRSRGELSEADRDRLDKQLEVYKSHSLAMKSKMDRLKLELSRKKSELEALQTRLETLEEQDSDMRQHIEVLKESL  331 (775)
T ss_pred             HHHHHHHhcccccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            35555555554333333333333222222       23444444445555666666666666666666666666666666


Q ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccccccccccchhHHHHHHH
Q 008082          207 ETANANLEMLRSDGIKATEAYNTLSLELELSKARVKSLEELVSKLQNDLLNSSNKLAESMGDVHLSQKNGENEEIDKLKG  286 (578)
Q Consensus       207 Eea~~~le~l~~e~~~l~~~~~~l~~eLe~~~~e~~~Le~ei~kL~~el~~~~~k~~~~e~~~~~~~~~e~~eei~eL~~  286 (578)
                      ...+.....|.+++..+...++.....++.-...+..++.+.+.+..+|.+++..++            -...+|..|.+
T Consensus       332 ~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei~~l~d~~d------------~~e~ki~~Lq~  399 (775)
T PF10174_consen  332 RAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEIEDLRDMLD------------KKERKINVLQK  399 (775)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHH
Confidence            666666666666666666666666666666665666666666666666666554432            01123555555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHhHHHHHHHHHHHHHHhhhhh----HhHHhHHHHHHHHHH
Q 008082          287 ELDLARNELRQLRSALDASETRYQ------------EEYIQSTLQIRSAYEQLERAKSESS----QREADLETELKNVKA  350 (578)
Q Consensus       287 el~~le~EieeL~s~LE~aE~~lq------------eE~~~~~~el~~~~e~l~~~k~E~~----qr~~el~~el~~~~~  350 (578)
                      .+..+...+..=...+.....++.            ..+.....+..+.++.++......+    ..+..+..++..+..
T Consensus       400 kie~Lee~l~ekd~ql~~~k~Rl~~~~d~~~~~~~~~~lEea~~eker~~e~l~e~r~~~e~e~~Eele~~~~e~~~lk~  479 (775)
T PF10174_consen  400 KIENLEEQLREKDRQLDEEKERLSSQADSSNEDEALETLEEALREKERLQERLEEQRERAEKERQEELETYQKELKELKA  479 (775)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            544444444433344444444443            2222222333333333333322111    122224466666666


Q ss_pred             HHHHHHHHhHhHHHHHhhHHHHHHhHHHHh
Q 008082          351 QIEELRANLLDKETELQSISEENEGLNLKI  380 (578)
Q Consensus       351 eleel~~~l~d~E~eL~~L~ee~~~L~~ei  380 (578)
                      .++.|+..+.+..+.|-.++++..+|..-.
T Consensus       480 ~~~~LQ~eLsEk~~~l~~~kee~s~l~s~~  509 (775)
T PF10174_consen  480 KLESLQKELSEKELQLEDAKEEASKLASSQ  509 (775)
T ss_pred             HHHHHhhhhHHHHHHHHHhhhHHHHHhhcc
Confidence            666677777666666665555555554433

Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=99.05  E-value=0.00021  Score=87.08  Aligned_cols=25  Identities=12%  Similarity=0.239  Sum_probs=11.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Q 008082          281 IDKLKGELDLARNELRQLRSALDAS  305 (578)
Q Consensus       281 i~eL~~el~~le~EieeL~s~LE~a  305 (578)
                      +..+..++..++..+..+...+..+
T Consensus       672 ~~~l~~e~~~l~~~~~~l~~~l~~~  696 (1179)
T TIGR02168       672 ILERRREIEELEEKIEELEEKIAEL  696 (1179)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444444444444444433

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]

Probab=99.04  E-value=0.00025  Score=86.87  Aligned_cols=61  Identities=20%  Similarity=0.222  Sum_probs=29.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008082          198 DVRKSQMQLETANANLEMLRSDGIKATEAYNTLSLELELSKARVKSLEELVSKLQNDLLNS  258 (578)
Q Consensus       198 ~~~el~~qLEea~~~le~l~~e~~~l~~~~~~l~~eLe~~~~e~~~Le~ei~kL~~el~~~  258 (578)
                      ....+..+|..+...++.+......+...+..+...++.+...+.+|...|.........+
T Consensus       831 l~~~~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~le~k~~eL~k~l~~~~~~~~~l  891 (1822)
T KOG4674|consen  831 LTNSLEKQLENAQNLVDELESELKSLLTSLDSVSTNIAKLEIKLSELEKRLKSAKTQLLNL  891 (1822)
T ss_pred             HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhc
Confidence            3334444555555555555555555555555554445544444444444444444444333

>TIGR00606 rad50 rad50

Probab=98.97  E-value=0.00048  Score=85.33  Aligned_cols=22  Identities=9%  Similarity=0.033  Sum_probs=12.8

Q ss_pred             HHHHHHHHHHHHHhhHHHHHHH
Q 008082          451 AARVAEREALMKVGFLTEEADK  472 (578)
Q Consensus       451 ~a~~~~~~~~~kl~~l~~ele~  472 (578)
                      .+....+.+..++..++.+|++
T Consensus      1072 ~l~g~~k~le~qi~~l~~eL~e 1093 (1311)
T TIGR00606      1072 LALGRQKGYEKEIKHFKKELRE 1093 (1311)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcc
Confidence            3334445666666677777744

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=98.92  E-value=0.00063  Score=82.97  Aligned_cols=17  Identities=29%  Similarity=0.628  Sum_probs=6.5

Q ss_pred             HHHHHHHHHHHHHHHHh
Q 008082          343 TELKNVKAQIEELRANL  359 (578)
Q Consensus       343 ~el~~~~~eleel~~~l  359 (578)
                      .++..+...++.+...+
T Consensus       677 ~e~~~l~~~~~~l~~~l  693 (1179)
T TIGR02168       677 REIEELEEKIEELEEKI  693 (1179)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            33333333333333333

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=98.91  E-value=0.00068  Score=83.08  Aligned_cols=35  Identities=17%  Similarity=0.264  Sum_probs=21.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008082          468 EEADKSSRRAARVTEQLDAAQAASTEMEAELRKLK  502 (578)
Q Consensus       468 ~ele~~~~~~~~l~eql~~ae~~~~~lEaEL~klr  502 (578)
                      .+.+....+...+..+......++..+..-+..+.
T Consensus       970 ee~e~~~~r~~~l~~~~~dl~~a~~~l~~~i~~~d 1004 (1163)
T COG1196         970 EEYEEVEERYEELKSQREDLEEAKEKLLEVIEELD 1004 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444456666666666666666666666665544

>PRK03918 chromosome segregation protein; Provisional

Probab=98.86  E-value=0.00079  Score=80.19  Aligned_cols=28  Identities=14%  Similarity=0.253  Sum_probs=13.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008082          282 DKLKGELDLARNELRQLRSALDASETRY  309 (578)
Q Consensus       282 ~eL~~el~~le~EieeL~s~LE~aE~~l  309 (578)
                      ..+..++..++.++..+...+..++..+
T Consensus       455 ~~~~~ei~~l~~~~~~l~~~~~~l~~~~  482 (880)
T PRK03918        455 EEYTAELKRIEKELKEIEEKERKLRKEL  482 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444555555555555554444444333

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=98.84  E-value=0.0011  Score=80.94  Aligned_cols=26  Identities=31%  Similarity=0.475  Sum_probs=11.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008082          281 IDKLKGELDLARNELRQLRSALDASE  306 (578)
Q Consensus       281 i~eL~~el~~le~EieeL~s~LE~aE  306 (578)
                      +..+...+..+..++..+...+..++
T Consensus       676 l~~l~~~l~~l~~~l~~l~~~~~~~~  701 (1164)
T TIGR02169       676 LQRLRERLEGLKRELSSLQSELRRIE  701 (1164)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444444444444444443333

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=98.76  E-value=0.00079  Score=74.34  Aligned_cols=35  Identities=17%  Similarity=0.270  Sum_probs=21.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008082          469 EADKSSRRAARVTEQLDAAQAASTEMEAELRKLKV  503 (578)
Q Consensus       469 ele~~~~~~~~l~eql~~ae~~~~~lEaEL~klr~  503 (578)
                      .|-+..+.+.++...+..++.-+..+..+-..|..
T Consensus       411 qlsE~~rel~Elks~lrv~qkEKEql~~EkQeL~~  445 (546)
T PF07888_consen  411 QLSENRRELQELKSSLRVAQKEKEQLQEEKQELLE  445 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444566666677777777777666666655553

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=98.74  E-value=0.0023  Score=78.51  Aligned_cols=45  Identities=36%  Similarity=0.512  Sum_probs=21.8

Q ss_pred             HhHHhHHHHHHHHHHHHHHHHHHhHhHHHHHhhHHHHHHhHHHHh
Q 008082          336 QREADLETELKNVKAQIEELRANLLDKETELQSISEENEGLNLKI  380 (578)
Q Consensus       336 qr~~el~~el~~~~~eleel~~~l~d~E~eL~~L~ee~~~L~~ei  380 (578)
                      .++..+..++..+...++.++..+...+..+..+......|...+
T Consensus       737 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~  781 (1163)
T COG1196         737 SRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEI  781 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333334444444444445555555555555555544444444444

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=98.68  E-value=0.0014  Score=72.52  Aligned_cols=101  Identities=14%  Similarity=0.178  Sum_probs=51.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 008082          152 AQTKHAESAYAEMQNLRIELTETLSLVEKLKNELSYCKESESQALEDVRKSQMQLETANANLEMLRSDGIKATEAYNTLS  231 (578)
Q Consensus       152 ~~~k~~~~le~el~eL~~el~e~~~eie~l~~~l~e~e~~~s~l~~~~~el~~qLEea~~~le~l~~e~~~l~~~~~~l~  231 (578)
                      .+..+...++..+..+..+..+....+..++.-..+.+.....++..+..+..++.........+..+...+...+..+.
T Consensus       217 e~~~ri~~LEedi~~l~qk~~E~e~~~~~lk~~~~elEq~~~eLk~rLk~~~~~~~~~~~~~~~~~~e~e~LkeqLr~~q  296 (546)
T PF07888_consen  217 EARQRIRELEEDIKTLTQKEKEQEKELDKLKELKAELEQLEAELKQRLKETVVQLKQEETQAQQLQQENEALKEQLRSAQ  296 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHH
Confidence            33344445666666666666555555555554444455555555555555555554444444444444444555555555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q 008082          232 LELELSKARVKSLEELVSKLQ  252 (578)
Q Consensus       232 ~eLe~~~~e~~~Le~ei~kL~  252 (578)
                      ..+..++..+.-|..+++.+.
T Consensus       297 e~lqaSqq~~~~L~~EL~~~~  317 (546)
T PF07888_consen  297 EQLQASQQEAELLRKELSDAV  317 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            555555554444444444433

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function

Probab=98.67  E-value=0.0017  Score=72.95  Aligned_cols=169  Identities=24%  Similarity=0.311  Sum_probs=82.3

Q ss_pred             HHHHHHHHHHHHHHHHhHhHHHHHhhHHHHHHhHHHHhccc-----ccccchHHHHHHHHHHHHHHHHHHHHhHhHHHHH
Q 008082          343 TELKNVKAQIEELRANLLDKETELQSISEENEGLNLKIKTN-----ESNQRDSKLAVELNKLEAEVVEFKASILDKETEL  417 (578)
Q Consensus       343 ~el~~~~~eleel~~~l~d~E~eL~~L~ee~~~L~~ei~e~-----~~~k~~~El~k~~kkle~e~~eLk~~L~e~E~~l  417 (578)
                      .++...+.++..++.+.......+.+|..+...+..++.-.     .+.....++...+.++..+...++.-.......+
T Consensus       316 ~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eLea~~~~e~~~k~~~~~l~~~Lqql~~Eae~Ak~ea~~~~~E~  395 (522)
T PF05701_consen  316 SELEKEKEELERLKEREKEASSEVSSLEAELNKTRSELEAAKAEEEKAKEAMSELPKALQQLSSEAEEAKKEAEEAKEEV  395 (522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444444444444444444444444444444444444211     1122234555555555566666655555555555


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHH---------------------HHH---
Q 008082          418 MSLTEQNGMLKMEIENREMERNKVNDEAISLAEAARVAEREALMKVGFLTEEA---------------------DKS---  473 (578)
Q Consensus       418 q~~~~E~~~lk~~i~~~~~e~~~~~~e~~~~le~a~~~~~~~~~kl~~l~~el---------------------e~~---  473 (578)
                      ..+..+...++..+...+..    ...+...+++++.++.-+...++.+....                     ...   
T Consensus       396 ~~~k~E~e~~ka~i~t~E~r----L~aa~ke~eaaKasEa~Ala~ik~l~e~~~~~~~~~~~~~~~Vtls~eEy~~L~~k  471 (522)
T PF05701_consen  396 EKAKEEAEQTKAAIKTAEER----LEAALKEAEAAKASEALALAEIKALSESESSSRASDSESSSKVTLSLEEYESLSKK  471 (522)
T ss_pred             HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccCCCCCeeecHHHHHHHHHH
Confidence            55555555555555533332    33334444556666655555555443211                     111   


Q ss_pred             --------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 008082          474 --------SRRAARVTEQLDAAQAASTEMEAELRKLKVQSDQWRKAAEAA  515 (578)
Q Consensus       474 --------~~~~~~l~eql~~ae~~~~~lEaEL~klr~q~eq~RkaaE~~  515 (578)
                              ..++.....|++++......+..-|..+..+++..|.+.+.+
T Consensus       472 a~e~ee~a~kkva~A~aqve~ak~se~e~l~kle~~~~e~~~~k~al~~A  521 (522)
T PF05701_consen  472 AEEAEELAEKKVAAAMAQVEAAKASEKEILEKLEEAMKEIEERKEALEEA  521 (522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence                    123333456666666666666665655555666655555443

Several sequences in this family are described as being myosin heavy chain-like.

>PRK03918 chromosome segregation protein; Provisional

Probab=98.65  E-value=0.003  Score=75.23  Aligned_cols=28  Identities=25%  Similarity=0.404  Sum_probs=16.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008082          278 NEEIDKLKGELDLARNELRQLRSALDAS  305 (578)
Q Consensus       278 ~eei~eL~~el~~le~EieeL~s~LE~a  305 (578)
                      ..++.+|...+..+..++..+...+...
T Consensus       458 ~~ei~~l~~~~~~l~~~~~~l~~~~~~~  485 (880)
T PRK03918        458 TAELKRIEKELKEIEEKERKLRKELREL  485 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3446666666666666666665555443

>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]

Probab=98.65  E-value=0.0043  Score=76.46  Aligned_cols=298  Identities=21%  Similarity=0.232  Sum_probs=157.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHH
Q 008082          129 LGSAMNEIQRLKFQLEKVAESEAAQTKHAESAYAEMQNLRIELTETLSLVEKLKNELSYCKESESQALEDVRKSQMQLET  208 (578)
Q Consensus       129 L~~~~~el~klr~qle~~~~ak~~~~k~~~~le~el~eL~~el~e~~~eie~l~~~l~e~e~~~s~l~~~~~el~~qLEe  208 (578)
                      +.+...++..++.+++.......=+..+.+-++..+.-++.+++.+...-..+...+..-+..+..+...+..+...++.
T Consensus       663 ~~~l~~ev~~ir~~l~k~~~~~~fA~ekle~L~~~ie~~K~e~~tL~er~~~l~~~i~~~~q~~~~~s~eL~~a~~k~~~  742 (1822)
T KOG4674|consen  663 FDSLQKEVTAIRSQLEKLKNELNLAKEKLENLEKNLELTKEEVETLEERNKNLQSTISKQEQTVHTLSQELLSANEKLEK  742 (1822)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence            56666677888888887777666666655555555555555555555544555555555555555555555555566666


Q ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccccccccccchhHHHHHHHHH
Q 008082          209 ANANLEMLRSDGIKATEAYNTLSLELELSKARVKSLEELVSKLQNDLLNSSNKLAESMGDVHLSQKNGENEEIDKLKGEL  288 (578)
Q Consensus       209 a~~~le~l~~e~~~l~~~~~~l~~eLe~~~~e~~~Le~ei~kL~~el~~~~~k~~~~e~~~~~~~~~e~~eei~eL~~el  288 (578)
                      +...+..|..+..-+......|..+++.+-.+...|+-.+..++........-.               ......++..+
T Consensus       743 le~ev~~LKqE~~ll~~t~~rL~~e~~~l~~e~~~L~~~l~~lQt~~~~~e~s~---------------~~~k~~~e~~i  807 (1822)
T KOG4674|consen  743 LEAELSNLKQEKLLLKETEERLSQELEKLSAEQESLQLLLDNLQTQKNELEESE---------------MATKDKCESRI  807 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHH
Confidence            666666666665555666666667777776766666666666666554442211               11133333444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhHhHHhHHHHHHHHHHHHHHHHHHhHhHHHHHhh
Q 008082          289 DLARNELRQLRSALDASETRYQEEYIQSTLQIRSAYEQLERAKSESSQREADLETELKNVKAQIEELRANLLDKETELQS  368 (578)
Q Consensus       289 ~~le~EieeL~s~LE~aE~~lqeE~~~~~~el~~~~e~l~~~k~E~~qr~~el~~el~~~~~eleel~~~l~d~E~eL~~  368 (578)
                      ..+..++..|+..++.-...+..-......++..+...++...+++..    +-..+..+...++.+...+.+.+..|+.
T Consensus       808 ~eL~~el~~lk~klq~~~~~~r~l~~~~~~~l~~~~~~i~~~~~~~~~----~~~~l~~~~~~~~~le~k~~eL~k~l~~  883 (1822)
T KOG4674|consen  808 KELERELQKLKKKLQEKSSDLRELTNSLEKQLENAQNLVDELESELKS----LLTSLDSVSTNIAKLEIKLSELEKRLKS  883 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444444444444444333333333333334444444444433333332    2233333344444444444444444443


Q ss_pred             HHHHHHhHHHHhcccccccchHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Q 008082          369 ISEENEGLNLKIKTNESNQRDSKLAVELNKLEAEVVEFKASILDKETELMSLTEQNGMLKMEIENREMERNKVNDEAISL  448 (578)
Q Consensus       369 L~ee~~~L~~ei~e~~~~k~~~El~k~~kkle~e~~eLk~~L~e~E~~lq~~~~E~~~lk~~i~~~~~e~~~~~~e~~~~  448 (578)
                      .......|...    .++...+-+...++....++..|+.+|.+....+......+..+..-+...-+.+....-.+.+.
T Consensus       884 ~~~~~~~l~~~----~~~~d~~~~~~~Lr~~~eq~~~l~~~L~~a~s~i~~yqe~~~s~eqsl~~~ks~lde~~~~~ea~  959 (1822)
T KOG4674|consen  884 AKTQLLNLDSK----SSNEDATILEDTLRKELEEITDLKEELTDALSQIREYQEEYSSLEQSLESVKSELDETRLELEAK  959 (1822)
T ss_pred             hHHHHhhcccc----chhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence            33333333321    00334455555567777777777888877777776666666665555554444443333344444


Q ss_pred             H
Q 008082          449 A  449 (578)
Q Consensus       449 l  449 (578)
                      +
T Consensus       960 i  960 (1822)
T KOG4674|consen  960 I  960 (1822)
T ss_pred             H
Confidence            4

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=98.64  E-value=0.00098  Score=69.69  Aligned_cols=89  Identities=20%  Similarity=0.250  Sum_probs=56.9

Q ss_pred             HHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 008082          401 AEVVEFKASILDKETELMSLTEQNGMLKMEIENREMERNKVNDEAISLAEAARVAEREALMKVGFLTEEADKSSRRAARV  480 (578)
Q Consensus       401 ~e~~eLk~~L~e~E~~lq~~~~E~~~lk~~i~~~~~e~~~~~~e~~~~le~a~~~~~~~~~kl~~l~~ele~~~~~~~~l  480 (578)
                      .++..++..+......+..+...+..|...|..++....              .....+...+..++.++......+...
T Consensus       216 ~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~--------------~~~~~~~~~i~~le~el~~l~~~~~~~  281 (312)
T PF00038_consen  216 EELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLD--------------EEREEYQAEIAELEEELAELREEMARQ  281 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHH--------------HHHHHHHHhhhccchhHHHHHHHHHHH
Confidence            444555555544455555555555555555553322211              112244556677788888888888888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Q 008082          481 TEQLDAAQAASTEMEAELRKLKV  503 (578)
Q Consensus       481 ~eql~~ae~~~~~lEaEL~klr~  503 (578)
                      ...+...-..+-.|+.||..+|.
T Consensus       282 ~~ey~~Ll~~K~~Ld~EIatYR~  304 (312)
T PF00038_consen  282 LREYQELLDVKLALDAEIATYRK  304 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHH
Confidence            88888888899999999988873

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=98.58  E-value=0.00066  Score=70.98  Aligned_cols=223  Identities=17%  Similarity=0.243  Sum_probs=102.2

Q ss_pred             HHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008082          175 LSLVEKLKNELSYCKESESQALEDVRKSQMQLETANANLEMLRSDGIKATEAYNTLSLELELSKARVKSLEELVSKLQND  254 (578)
Q Consensus       175 ~~eie~l~~~l~e~e~~~s~l~~~~~el~~qLEea~~~le~l~~e~~~l~~~~~~l~~eLe~~~~e~~~Le~ei~kL~~e  254 (578)
                      ..+|..++..+.++-...+++...+..+...+++++..++........++..+..+...++......-.|+..|..|..+
T Consensus        53 e~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eE  132 (312)
T PF00038_consen   53 EEELRELRRQIDDLSKEKARLELEIDNLKEELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQSLKEE  132 (312)
T ss_dssp             HHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHH
Confidence            33555555555555555555555555566666666555555555555566666666666666555555666666666666


Q ss_pred             HHhhhhhhhhccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHhhh
Q 008082          255 LLNSSNKLAESMGDVHLSQKNGENEEIDKLKGELDLARNELRQLRSALDASETRYQEEYIQSTLQIRSAY-EQLERAKSE  333 (578)
Q Consensus       255 l~~~~~k~~~~e~~~~~~~~~e~~eei~eL~~el~~le~EieeL~s~LE~aE~~lqeE~~~~~~el~~~~-e~l~~~k~E  333 (578)
                      +.-.+.-+.. ++.++...+.  .....++.    .  .--..|..+|.++...|.........++...| ..+..+.  
T Consensus       133 l~fl~~~hee-Ei~~L~~~~~--~~~~~e~~----~--~~~~dL~~~L~eiR~~ye~~~~~~~~e~e~~y~~k~~~l~--  201 (312)
T PF00038_consen  133 LEFLKQNHEE-EIEELREQIQ--SSVTVEVD----Q--FRSSDLSAALREIRAQYEEIAQKNREELEEWYQSKLEELR--  201 (312)
T ss_dssp             HHHHHHHHHH-HHHTTSTT------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred             HHHHHhhhhh-hhhhhhhccc--cccceeec----c--cccccchhhhhhHHHHHHHHHhhhhhhhhhhccccccccc--
Confidence            6555443321 1111111110  00000000    0  00111233333333333322222223333333 1122111  


Q ss_pred             hhHhHHhHHHHHHHHHHHHHHHHHHhHhHHHHHhhHHHHHHhHHHHhccc--ccccchHHHHHHHHHHHHHHHHHHHHh
Q 008082          334 SSQREADLETELKNVKAQIEELRANLLDKETELQSISEENEGLNLKIKTN--ESNQRDSKLAVELNKLEAEVVEFKASI  410 (578)
Q Consensus       334 ~~qr~~el~~el~~~~~eleel~~~l~d~E~eL~~L~ee~~~L~~ei~e~--~~~k~~~El~k~~kkle~e~~eLk~~L  410 (578)
                        .........+...+.++..++..+.....++.+|...+..|...|.++  ........+...+..++.++..++..+
T Consensus       202 --~~~~~~~~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~~~~~~~~~i~~le~el~~l~~~~  278 (312)
T PF00038_consen  202 --QQSEKSSEELESAKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLDEEREEYQAEIAELEEELAELREEM  278 (312)
T ss_dssp             --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             --ccccccccccchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHH
Confidence              111123344445666666666666666666667777777777766443  112223334444444444444444444

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]

Probab=98.54  E-value=0.00068  Score=74.83  Aligned_cols=278  Identities=17%  Similarity=0.229  Sum_probs=147.7

Q ss_pred             HHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHH
Q 008082          111 WQSELDAVQKQQSMDSAALGSAMNEIQRLKFQLEKVAESEAAQTKHAESAYAEMQNLRIELTETLSLVEKLKNELSYCKE  190 (578)
Q Consensus       111 ~~~ele~~r~~~~~~~~~L~~~~~el~klr~qle~~~~ak~~~~k~~~~le~el~eL~~el~e~~~eie~l~~~l~e~e~  190 (578)
                      |..+...++--|...+..+...+++.          ...+.........+..++.+++..+..+...+...+.++.+...
T Consensus        79 ~~~~ts~ik~~ye~El~~ar~~l~e~----------~~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~  148 (546)
T KOG0977|consen   79 VGRETSGIKAKYEAELATARKLLDET----------ARERAKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLS  148 (546)
T ss_pred             ccCCCcchhHHhhhhHHHHHHHHHHH----------HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhh
Confidence            44444444444555544444443333          33333333444466677777777777776666666666666666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccccc
Q 008082          191 SESQALEDVRKSQMQLETANANLEMLRSDGIKATEAYNTLSLELELSKARVKSLEELVSKLQNDLLNSSNKLAESMGDVH  270 (578)
Q Consensus       191 ~~s~l~~~~~el~~qLEea~~~le~l~~e~~~l~~~~~~l~~eLe~~~~e~~~Le~ei~kL~~el~~~~~k~~~~e~~~~  270 (578)
                      .++.+...+.-+......+...+..|..+...+...+..+..+++.----...++..+..|..+|.-+..-+.       
T Consensus       149 ~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~Etllr~d~~n~~q~Lleel~f~~~~h~-------  221 (546)
T KOG0977|consen  149 RLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQLDDETLLRVDLQNRVQTLLEELAFLKRIHK-------  221 (546)
T ss_pred             hhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccH-------
Confidence            6666666666666666666666666666666666666666666665444445555666666666655544321       


Q ss_pred             ccccccchhHHHHHHHHHH-----HH-HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHhhhhhHh--HH-h
Q 008082          271 LSQKNGENEEIDKLKGELD-----LA-RNELRQLRSALDASETRYQEEYIQSTLQIRSAY-EQLERAKSESSQR--EA-D  340 (578)
Q Consensus       271 ~~~~~e~~eei~eL~~el~-----~l-e~EieeL~s~LE~aE~~lqeE~~~~~~el~~~~-e~l~~~k~E~~qr--~~-e  340 (578)
                              .+|.++.....     .. +.=-.+|..+|.+....|..-...-+.+++..| .-+..++.....-  .. .
T Consensus       222 --------~eI~e~~~~~~rd~t~~~r~~F~~eL~~Ai~eiRaqye~~~~~nR~diE~~Y~~kI~~i~~~~~~~~~~~~~  293 (546)
T KOG0977|consen  222 --------QEIEEERRKARRDTTADNREYFKNELALAIREIRAQYEAISRQNRKDIESWYKRKIQEIRTSAERANVEQNY  293 (546)
T ss_pred             --------HHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhccccchhHH
Confidence                    22322222221     01 111133445555555555544444445555555 2334343211111  11 1


Q ss_pred             HHHHHHHHHHHHHHHHHHhHhHHHHHhhHHHHHHhHHHHhcccccccchHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHH
Q 008082          341 LETELKNVKAQIEELRANLLDKETELQSISEENEGLNLKIKTNESNQRDSKLAVELNKLEAEVVEFKASILDKETELMSL  420 (578)
Q Consensus       341 l~~el~~~~~eleel~~~l~d~E~eL~~L~ee~~~L~~ei~e~~~~k~~~El~k~~kkle~e~~eLk~~L~e~E~~lq~~  420 (578)
                      ..+++..+...+..|++.+.+.+.....|......|...+.                   .+..-..+.|.++++.+..+
T Consensus       294 ~rEEl~~~R~~i~~Lr~klselE~~n~~L~~~I~dL~~ql~-------------------e~~r~~e~~L~~kd~~i~~m  354 (546)
T KOG0977|consen  294 AREELRRIRSRISGLRAKLSELESRNSALEKRIEDLEYQLD-------------------EDQRSFEQALNDKDAEIAKM  354 (546)
T ss_pred             HHHHHHHHHhcccchhhhhccccccChhHHHHHHHHHhhhh-------------------hhhhhhhhhhhhHHHHHHHH
Confidence            33667777777788888888777775555444444444442                   22333445555555555555


Q ss_pred             HHHHHHHHHHHH
Q 008082          421 TEQNGMLKMEIE  432 (578)
Q Consensus       421 ~~E~~~lk~~i~  432 (578)
                      +++...+-.++.
T Consensus       355 Reec~~l~~Elq  366 (546)
T KOG0977|consen  355 REECQQLSVELQ  366 (546)
T ss_pred             HHHHHHHHHHHH
Confidence            555555544444

>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=98.46  E-value=0.0065  Score=69.36  Aligned_cols=322  Identities=17%  Similarity=0.234  Sum_probs=165.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhhHhHhHh
Q 008082           31 SELESQLAQLQEDLKKAKEQLNASDSWKRRAQQEAEEAKKQLSAMSARLEESQQQLLEITTSEDTRVEELRQLSQDRDKA  110 (578)
Q Consensus        31 ~eLe~ql~~lqeeL~~eke~~~~~E~~k~~~~~ELe~~k~~~~el~~~Le~~~~~~~~~~e~ek~r~~El~kl~~~~e~~  110 (578)
                      -+|.+|+.+|.+.|+..|-.++.   .+..+ .||+..+-++..    +.+.+-+.+.++..-.+++..   .+..    
T Consensus       227 ~eLr~QvrdLtEkLetlR~kR~E---Dk~Kl-~Elekmkiqleq----lqEfkSkim~qqa~Lqrel~r---aR~e----  291 (1243)
T KOG0971|consen  227 EELRAQVRDLTEKLETLRLKRAE---DKAKL-KELEKMKIQLEQ----LQEFKSKIMEQQADLQRELKR---ARKE----  291 (1243)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhh---hHHHH-HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH---HHHH----
Confidence            45999999999999988765543   23332 245443333221    222222222222111111111   1111    


Q ss_pred             HHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHH
Q 008082          111 WQSELDAVQKQQSMDSAALGSAMNEIQRLKFQLEKVAESEAAQTKHAESAYAEMQNLRIELTETLSLVEKLKNELSYCKE  190 (578)
Q Consensus       111 ~~~ele~~r~~~~~~~~~L~~~~~el~klr~qle~~~~ak~~~~k~~~~le~el~eL~~el~e~~~eie~l~~~l~e~e~  190 (578)
                       ..++-..+.+|...          +..+--.+|++.--|.-++-.++.+..++..++..++++...++-|+....+--.
T Consensus       292 -~keaqe~ke~~k~e----------mad~ad~iEmaTldKEmAEERaesLQ~eve~lkEr~deletdlEILKaEmeekG~  360 (1243)
T KOG0971|consen  292 -AKEAQEAKERYKEE----------MADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELETDLEILKAEMEEKGS  360 (1243)
T ss_pred             -HHHHHHHHHHHHHH----------HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence             11122222233333          3333334566666677777788888889999999999888888888877554321


Q ss_pred             HH-HHHH---HHHHHHHHHHHHHHHHHHHHHh----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 008082          191 SE-SQAL---EDVRKSQMQLETANANLEMLRS----DGIKATEAYNTLSLELELSKARVKSLEELVSKLQNDLLNSSNKL  262 (578)
Q Consensus       191 ~~-s~l~---~~~~el~~qLEea~~~le~l~~----e~~~l~~~~~~l~~eLe~~~~e~~~Le~ei~kL~~el~~~~~k~  262 (578)
                      .. ..-.   ..++.....|.++=-.++.+..    +..++...++....+++++++....|..++..+++.|.+++...
T Consensus       361 ~~~~~ss~qfkqlEqqN~rLKdalVrLRDlsA~ek~d~qK~~kelE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQV  440 (1243)
T KOG0971|consen  361 DGQAASSYQFKQLEQQNARLKDALVRLRDLSASEKQDHQKLQKELEKKNSELEELRRQKERLSRELDQAESTIADLKEQV  440 (1243)
T ss_pred             CCcccchHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            11 0001   1223333334433333333222    23444445555555555555544455555555555554444322


Q ss_pred             hhccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhHhHHhHH
Q 008082          263 AESMGDVHLSQKNGENEEIDKLKGELDLARNELRQLRSALDASETRYQEEYIQSTLQIRSAYEQLERAKSESSQREADLE  342 (578)
Q Consensus       263 ~~~e~~~~~~~~~e~~eei~eL~~el~~le~EieeL~s~LE~aE~~lqeE~~~~~~el~~~~e~l~~~k~E~~qr~~el~  342 (578)
                      ++--+.+.  =.....+.--+|+..+..|+.+|..|. ++++....|++-...+..+++..+..+.--+.+..+++...+
T Consensus       441 DAAlGAE~--MV~qLtdknlnlEekVklLeetv~dlE-alee~~EQL~Esn~ele~DLreEld~~~g~~kel~~r~~aaq  517 (1243)
T KOG0971|consen  441 DAALGAEE--MVEQLTDKNLNLEEKVKLLEETVGDLE-ALEEMNEQLQESNRELELDLREELDMAKGARKELQKRVEAAQ  517 (1243)
T ss_pred             HHhhcHHH--HHHHHHhhccCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            21000000  000111222345556666677777663 344455555555555556677666666655667777777777


Q ss_pred             HHHHHHHHHHHHHHHHhHhHHHHHhhHHHHHHhHHHHhc
Q 008082          343 TELKNVKAQIEELRANLLDKETELQSISEENEGLNLKIK  381 (578)
Q Consensus       343 ~el~~~~~eleel~~~l~d~E~eL~~L~ee~~~L~~ei~  381 (578)
                      .-+-.....|-.++......-.-++.+.+++.....+..
T Consensus       518 et~yDrdqTI~KfRelva~Lqdqlqe~~dq~~Sseees~  556 (1243)
T KOG0971|consen  518 ETVYDRDQTIKKFRELVAHLQDQLQELTDQQESSEEESQ  556 (1243)
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhc
Confidence            777777777777777766666666666665555555543

>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=98.29  E-value=0.016  Score=66.39  Aligned_cols=38  Identities=18%  Similarity=0.250  Sum_probs=26.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhh
Q 008082          479 RVTEQLDAAQAASTEMEAELRKLKVQSDQWRKAAEAATAM  518 (578)
Q Consensus       479 ~l~eql~~ae~~~~~lEaEL~klr~q~eq~RkaaE~~~~~  518 (578)
                      +-.-++...-+=..+++.+|+.+  +..+.|+-+..-.|-
T Consensus       567 dyk~~fa~skayaraie~Qlrqi--Ev~~a~rh~~~l~AF  604 (1243)
T KOG0971|consen  567 DYKIKFAESKAYARAIEMQLRQI--EVAQANRHMSLLTAF  604 (1243)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHH--HHHHHHHHHHHHHHh
Confidence            33556666666667788888865  467778887777665

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=98.20  E-value=0.0051  Score=62.06  Aligned_cols=217  Identities=17%  Similarity=0.278  Sum_probs=140.7

Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhhhhhhHHHHHHHhh
Q 008082           28 SRVSELESQLAQLQEDLKKAKEQLNASDSWKRRAQQEAEEAKKQLSAMSARLEESQQQ---LLEITTSEDTRVEELRQLS  104 (578)
Q Consensus        28 ~~~~eLe~ql~~lqeeL~~eke~~~~~E~~k~~~~~ELe~~k~~~~el~~~Le~~~~~---~~~~~e~ek~r~~El~kl~  104 (578)
                      +++..+...+..+.+.+......+..++....++..++..+.+.+..+...|+.+...   +......-.++..+.....
T Consensus         1 kK~~~l~~eld~~~~~~~~~~~~l~~~~~~~~~aE~e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~e~~~de~er~~   80 (237)
T PF00261_consen    1 KKIQQLKDELDEAEERLEEAEEKLKEAEKRAEKAEAEVASLQRRIQLLEEELERAEERLEEATEKLEEAEKRADESERAR   80 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHCHHH
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4677888888888888888888888888888888888888888877776666654331   1111111112222221111


Q ss_pred             HhHhHhHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008082          105 QDRDKAWQSELDAVQKQQSMDSAALGSAMNEIQRLKFQLEKVAESEAAQTKHAESAYAEMQNLRIELTETLSLVEKLKNE  184 (578)
Q Consensus       105 ~~~e~~~~~ele~~r~~~~~~~~~L~~~~~el~klr~qle~~~~ak~~~~k~~~~le~el~eL~~el~e~~~eie~l~~~  184 (578)
                      +.++           ..+..+-       +-+..+-.+|..+...-..+......+...+..+...|..+..-++.+-.+
T Consensus        81 k~lE-----------~r~~~~e-------eri~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~k  142 (237)
T PF00261_consen   81 KVLE-----------NREQSDE-------ERIEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERAEAAESK  142 (237)
T ss_dssp             HHHH-----------HHHHHHH-------HHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHH-----------hHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchh
Confidence            1111           1111221       123334444444444445555555566666666666666666667777777


Q ss_pred             HhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 008082          185 LSYCKESESQALEDVRKSQMQLETANANLEMLRSDGIKATEAYNTLSLELELSKARVKSLEELVSKLQNDLLNSSNKL  262 (578)
Q Consensus       185 l~e~e~~~s~l~~~~~el~~qLEea~~~le~l~~e~~~l~~~~~~l~~eLe~~~~e~~~Le~ei~kL~~el~~~~~k~  262 (578)
                      +.+++..+......+..+....+.+....+.+...+..|...+.......+.....+..|+..|..|..+|..++.++
T Consensus       143 i~eLE~el~~~~~~lk~lE~~~~~~~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~~  220 (237)
T PF00261_consen  143 IKELEEELKSVGNNLKSLEASEEKASEREDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKEKY  220 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            777777777777777777777777777777777777778788888877788888888888888888888888887654

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....

>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]

Probab=98.12  E-value=0.024  Score=62.95  Aligned_cols=92  Identities=13%  Similarity=0.197  Sum_probs=61.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 008082          391 KLAVELNKLEAEVVEFKASILDKETELMSLTEQNGMLKMEIENREMERNKVNDEAISLAEAARVAEREALMKVGFLTEEA  470 (578)
Q Consensus       391 El~k~~kkle~e~~eLk~~L~e~E~~lq~~~~E~~~lk~~i~~~~~e~~~~~~e~~~~le~a~~~~~~~~~kl~~l~~el  470 (578)
                      -+.-.++.+-..+..|+++|.|.|..-..+......|..++..                 ..+    -....|.+-..++
T Consensus       293 ~~rEEl~~~R~~i~~Lr~klselE~~n~~L~~~I~dL~~ql~e-----------------~~r----~~e~~L~~kd~~i  351 (546)
T KOG0977|consen  293 YAREELRRIRSRISGLRAKLSELESRNSALEKRIEDLEYQLDE-----------------DQR----SFEQALNDKDAEI  351 (546)
T ss_pred             HHHHHHHHHHhcccchhhhhccccccChhHHHHHHHHHhhhhh-----------------hhh----hhhhhhhhHHHHH
Confidence            3444555666788888888877777777666666666665551                 111    1122334445666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008082          471 DKSSRRAARVTEQLDAAQAASTEMEAELRKLKV  503 (578)
Q Consensus       471 e~~~~~~~~l~eql~~ae~~~~~lEaEL~klr~  503 (578)
                      ..+...|..+.-.+...---+-.|.+||..+|.
T Consensus       352 ~~mReec~~l~~Elq~LlD~ki~Ld~EI~~YRk  384 (546)
T KOG0977|consen  352 AKMREECQQLSVELQKLLDTKISLDAEIAAYRK  384 (546)
T ss_pred             HHHHHHHHHHHHHHHHhhchHhHHHhHHHHHHH
Confidence            666777777777788888888889999998874

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=98.05  E-value=0.012  Score=59.36  Aligned_cols=39  Identities=21%  Similarity=0.233  Sum_probs=14.7

Q ss_pred             HHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008082          175 LSLVEKLKNELSYCKESESQALEDVRKSQMQLETANANL  213 (578)
Q Consensus       175 ~~eie~l~~~l~e~e~~~s~l~~~~~el~~qLEea~~~l  213 (578)
                      ..++..|+.++..++....+....+..+...|+.+...+
T Consensus        35 E~e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~e~~~   73 (237)
T PF00261_consen   35 EAEVASLQRRIQLLEEELERAEERLEEATEKLEEAEKRA   73 (237)
T ss_dssp             HHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence            333333444443333333333333333333333333333

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins

Probab=98.00  E-value=0.1  Score=64.50  Aligned_cols=18  Identities=22%  Similarity=0.340  Sum_probs=11.3

Q ss_pred             hHHHHHHHHHHHHhhhcc
Q 008082          504 QSDQWRKAAEAATAMLSA  521 (578)
Q Consensus       504 q~eq~RkaaE~~~~~L~~  521 (578)
                      +..+.++..+.--.+|+.
T Consensus       914 l~~~l~~~~~~f~~~l~~  931 (1201)
T PF12128_consen  914 LREELKKAVERFKGVLTK  931 (1201)
T ss_pred             HHHHHHHHHHHHHHHHHh
Confidence            455666666666666643

>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]

Probab=97.86  E-value=0.083  Score=59.12  Aligned_cols=72  Identities=19%  Similarity=0.145  Sum_probs=43.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhh
Q 008082          444 EAISLAEAARVAEREALMKVGFLTEEADKSSRRAARVTEQLDAAQAASTEMEAELRKLKVQSDQWRKAAEAATAM  518 (578)
Q Consensus       444 e~~~~le~a~~~~~~~~~kl~~l~~ele~~~~~~~~l~eql~~ae~~~~~lEaEL~klr~q~eq~RkaaE~~~~~  518 (578)
                      .+...++.++....++....-.++.+++....+++.+..   .+...+.....+|.-.....++.+|.++..-+.
T Consensus       715 ~l~~~le~e~nr~~~~~~e~~~~qeE~~~l~~r~~~le~---e~r~~k~~~~q~lq~~ll~ve~~~k~~e~~~~~  786 (961)
T KOG4673|consen  715 QLSKSLEKERNRAAENRQEYLAAQEEADTLEGRANQLEV---EIRELKRKHKQELQEVLLHVELIQKDLEREKAS  786 (961)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhhHHHHHHHHHHHHhhhCHHH
Confidence            455566666666667777777778888877766665432   233445555555554444566667777665443

>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]

Probab=97.84  E-value=0.13  Score=60.60  Aligned_cols=70  Identities=27%  Similarity=0.249  Sum_probs=38.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 008082          152 AQTKHAESAYAEMQNLRIELTETLSLVEKLKNELSYCKESESQALEDVRKSQMQLETANANLEMLRSDGI  221 (578)
Q Consensus       152 ~~~k~~~~le~el~eL~~el~e~~~eie~l~~~l~e~e~~~s~l~~~~~el~~qLEea~~~le~l~~e~~  221 (578)
                      .+...+..++.++.....+...+++.|.+.+...+++.....++-...+.+..+.+...++++.|-..+.
T Consensus      1412 ~A~~~A~~~~~~l~~~~ae~eq~~~~v~ea~~~aseA~~~Aq~~~~~a~as~~q~~~s~~el~~Li~~v~ 1481 (1758)
T KOG0994|consen 1412 GALLMAGDADTQLRSKLAEAEQTLSMVREAKLSASEAQQSAQRALEQANASRSQMEESNRELRNLIQQVR 1481 (1758)
T ss_pred             hHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4445555555555555555555555555555555555555555555555555666666666655544443

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins

Probab=97.84  E-value=0.18  Score=62.27  Aligned_cols=57  Identities=19%  Similarity=0.300  Sum_probs=30.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008082          199 VRKSQMQLETANANLEMLRSDGIKATEAYNTLSLELELSKARVKSLEELVSKLQNDL  255 (578)
Q Consensus       199 ~~el~~qLEea~~~le~l~~e~~~l~~~~~~l~~eLe~~~~e~~~Le~ei~kL~~el  255 (578)
                      ++.++.+...+...+..+......+....+.....|...+.++..++..+..|...+
T Consensus       478 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~L  534 (1201)
T PF12128_consen  478 LEQAQEQQNQAQQAVEELQAEEQELRKERDQAEEELRQARRELEELRAQIAELQRQL  534 (1201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            333344444444444444444455555555555556666666666666666666554

>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex

Probab=97.82  E-value=0.099  Score=58.71  Aligned_cols=105  Identities=18%  Similarity=0.279  Sum_probs=51.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhhHhHh-----
Q 008082           34 ESQLAQLQEDLKKAKEQLNASDSWKRRAQQEAEEAKKQLSAMSARLEESQQQLLEITTSEDTRVEELRQLSQDRD-----  108 (578)
Q Consensus        34 e~ql~~lqeeL~~eke~~~~~E~~k~~~~~ELe~~k~~~~el~~~Le~~~~~~~~~~e~ek~r~~El~kl~~~~e-----  108 (578)
                      +..+..+..+|..-+..++..+-......+-|-.++...+-|...|++.+.........-+.....+.....-+.     
T Consensus       253 en~~kdl~~~l~es~~~~~qLeE~~~~q~E~Lkes~~~qe~L~~eL~~~K~slq~~~~tq~~le~~lq~~~k~~~qlt~e  332 (786)
T PF05483_consen  253 ENKIKDLLLLLQESQDKCNQLEEKTKEQHENLKESNEEQEHLLQELEDIKQSLQESESTQKALEEDLQQATKTLIQLTEE  332 (786)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            333444444554444555555555555555556666666666677776665554433333333333333222111     


Q ss_pred             -HhHHHHHHHHHHHhHhhHHHHHHHHHHHHH
Q 008082          109 -KAWQSELDAVQKQQSMDSAALGSAMNEIQR  138 (578)
Q Consensus       109 -~~~~~ele~~r~~~~~~~~~L~~~~~el~k  138 (578)
                       .+--.++-.++-.|+..++.+...+..|+.
T Consensus       333 Ke~~~Ee~nk~k~~~s~~v~e~qtti~~L~~  363 (786)
T PF05483_consen  333 KEAQMEELNKAKAQHSFVVTELQTTICNLKE  363 (786)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             111223345555676666666666554443

Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex

>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]

Probab=97.82  E-value=0.095  Score=58.40  Aligned_cols=39  Identities=23%  Similarity=0.366  Sum_probs=19.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 008082          224 TEAYNTLSLELELSKARVKSLEELVSKLQNDLLNSSNKL  262 (578)
Q Consensus       224 ~~~~~~l~~eLe~~~~e~~~Le~ei~kL~~el~~~~~k~  262 (578)
                      .+....+...+..+...+.+|+..+.....++...+..+
T Consensus       188 ~~~~~~~~~q~~~le~ki~~lq~a~~~t~~el~~~~s~~  226 (629)
T KOG0963|consen  188 KDEEQNLQEQLEELEKKISSLQSAIEDTQNELFDLKSKY  226 (629)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhh
Confidence            333444444444555555555555555555555555554

>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]

Probab=97.72  E-value=0.18  Score=58.79  Aligned_cols=83  Identities=13%  Similarity=0.134  Sum_probs=52.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHH--hhhhhHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 008082          390 SKLAVELNKLEAEVVEFKASILDKETELMSLTEQNGMLKMEIENREM--ERNKVNDEAISLAEAARVAEREALMKVGFLT  467 (578)
Q Consensus       390 ~El~k~~kkle~e~~eLk~~L~e~E~~lq~~~~E~~~lk~~i~~~~~--e~~~~~~e~~~~le~a~~~~~~~~~kl~~l~  467 (578)
                      .++...++.+......+..++++.+..+-.+-.+|.-|-.+|..+-.  ..++..+.-...++-....-+.+...+..+.
T Consensus       512 ~elkeQ~kt~~~qye~~~~k~eeLe~~l~~lE~ENa~LlkqI~~Lk~t~qn~~~LEq~~n~lE~~~~elkk~idaL~alr  591 (1195)
T KOG4643|consen  512 NELKEQYKTCDIQYELLSNKLEELEELLGNLEEENAHLLKQIQSLKTTSQNGALLEQNNNDLELIHNELKKYIDALNALR  591 (1195)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence            67777788888888888888888888888888899988888875544  3333333334344433333334444444444


Q ss_pred             HHHHH
Q 008082          468 EEADK  472 (578)
Q Consensus       468 ~ele~  472 (578)
                      .+.++
T Consensus       592 rhke~  596 (1195)
T KOG4643|consen  592 RHKEK  596 (1195)
T ss_pred             HHHHH
Confidence            33333

>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins

Probab=97.69  E-value=0.00015  Score=84.54  Aligned_cols=30  Identities=27%  Similarity=0.348  Sum_probs=0.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008082          279 EEIDKLKGELDLARNELRQLRSALDASETR  308 (578)
Q Consensus       279 eei~eL~~el~~le~EieeL~s~LE~aE~~  308 (578)
                      ..++.|++.+.-+-.|++-|+..|...+..
T Consensus       399 ~~~~RLerq~~L~~kE~d~LR~~L~syd~e  428 (722)
T PF05557_consen  399 KLIRRLERQKALATKERDYLRAQLKSYDKE  428 (722)
T ss_dssp             ------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            347788888888888888888888776544

The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.

>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]

Probab=97.69  E-value=0.2  Score=58.46  Aligned_cols=84  Identities=20%  Similarity=0.176  Sum_probs=66.0

Q ss_pred             HHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008082          177 LVEKLKNELSYCKESESQALEDVRKSQMQLETANANL--EMLRSDGIKATEAYNTLSLELELSKARVKSLEELVSKLQND  254 (578)
Q Consensus       177 eie~l~~~l~e~e~~~s~l~~~~~el~~qLEea~~~l--e~l~~e~~~l~~~~~~l~~eLe~~~~e~~~Le~ei~kL~~e  254 (578)
                      .++-++.++++++....-+...++=+..||..+...-  -++++++..+...++.+..+.+..+.....|..+++.|..+
T Consensus       258 Ds~fykdRveelkedN~vLleekeMLeeQLq~lrarse~~tleseiiqlkqkl~dm~~erdtdr~kteeL~eEnstLq~q  337 (1195)
T KOG4643|consen  258 DSDFYKDRVEELKEDNRVLLEEKEMLEEQLQKLRARSEGATLESEIIQLKQKLDDMRSERDTDRHKTEELHEENSTLQVQ  337 (1195)
T ss_pred             hhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence            4444777888888888888888888888888887777  47888888888888888888888888888888888888776


Q ss_pred             HHhhhh
Q 008082          255 LLNSSN  260 (578)
Q Consensus       255 l~~~~~  260 (578)
                      -..+-+
T Consensus       338 ~eqL~~  343 (1195)
T KOG4643|consen  338 KEQLDG  343 (1195)
T ss_pred             HHHhhh
Confidence            555543

>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=97.65  E-value=0.23  Score=58.04  Aligned_cols=106  Identities=20%  Similarity=0.286  Sum_probs=66.6

Q ss_pred             HHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 008082          181 LKNELSYCKESESQALEDVRKSQMQLETANANLEMLRSDGIKATEAYNTLSLELELSKARVKSLEELVSKLQNDLLNSSN  260 (578)
Q Consensus       181 l~~~l~e~e~~~s~l~~~~~el~~qLEea~~~le~l~~e~~~l~~~~~~l~~eLe~~~~e~~~Le~ei~kL~~el~~~~~  260 (578)
                      +..++.+|+..++.++..+......++-++.++.....+...+-..|.....+++.++.++..|...+..|...++....
T Consensus       397 l~~ql~~aK~~~~~~~t~~k~a~~k~e~~~~elk~~e~e~~t~~~~~~~~~~~ld~~q~eve~l~~~l~~l~~~~~~~e~  476 (1174)
T KOG0933|consen  397 LEDQLRDAKITLSEASTEIKQAKLKLEHLRKELKLREGELATASAEYVKDIEELDALQNEVEKLKKRLQSLGYKIGQEEA  476 (1174)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchHHH
Confidence            66677777778888777777777777777777777776666666666666666666666555555555555544432211


Q ss_pred             hhhhccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHH
Q 008082          261 KLAESMGDVHLSQKNGENEEIDKLKGELDLARNELRQLRSAL  302 (578)
Q Consensus       261 k~~~~e~~~~~~~~~e~~eei~eL~~el~~le~EieeL~s~L  302 (578)
                                      ..+....|...+..+..+++.|.+++
T Consensus       477 ----------------l~q~~~~l~~~~~~lk~~~~~l~a~~  502 (1174)
T KOG0933|consen  477 ----------------LKQRRAKLHEDIGRLKDELDRLLARL  502 (1174)
T ss_pred             ----------------HHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence                            11224555555566666666665544

>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]

Probab=97.60  E-value=0.23  Score=56.56  Aligned_cols=72  Identities=17%  Similarity=0.180  Sum_probs=37.0

Q ss_pred             HHHHHHHHHHhHhHHHHHhhHHHHHHhHHHHhccc-------ccccchHHHHHH-HHHHHHHHHHHHHHhHhHHHHHHHH
Q 008082          349 KAQIEELRANLLDKETELQSISEENEGLNLKIKTN-------ESNQRDSKLAVE-LNKLEAEVVEFKASILDKETELMSL  420 (578)
Q Consensus       349 ~~eleel~~~l~d~E~eL~~L~ee~~~L~~ei~e~-------~~~k~~~El~k~-~kkle~e~~eLk~~L~e~E~~lq~~  420 (578)
                      ...+-.++..+...+.+++.|...-..++..|.++       ..|+.-||..+. +.+-..-++-|.+.+.+++-++...
T Consensus       364 l~dvr~i~e~k~nve~elqsL~~l~aerqeQidelKn~if~~e~~~~dhe~~kneL~~a~ekld~mgthl~mad~Q~s~f  443 (1265)
T KOG0976|consen  364 LMDVRSIQEKKENVEEELQSLLELQAERQEQIDELKNHIFRLEQGKKDHEAAKNELQEALEKLDLMGTHLSMADYQLSNF  443 (1265)
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhH
Confidence            33334455555555666666666555555555442       556666665432 2223334445555555555555443

>PHA02562 46 endonuclease subunit; Provisional

Probab=97.59  E-value=0.097  Score=59.15  Aligned_cols=25  Identities=32%  Similarity=0.525  Sum_probs=13.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Q 008082          280 EIDKLKGELDLARNELRQLRSALDA  304 (578)
Q Consensus       280 ei~eL~~el~~le~EieeL~s~LE~  304 (578)
                      .+..|...+..++.++..+...+..
T Consensus       300 ~~~~l~d~i~~l~~~l~~l~~~i~~  324 (562)
T PHA02562        300 RITKIKDKLKELQHSLEKLDTAIDE  324 (562)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3555555555555555555444443

>PRK04863 mukB cell division protein MukB; Provisional

Probab=97.58  E-value=0.45  Score=59.60  Aligned_cols=17  Identities=12%  Similarity=0.323  Sum_probs=8.4

Q ss_pred             HHHHHHHHHHHhHhHHH
Q 008082          399 LEAEVVEFKASILDKET  415 (578)
Q Consensus       399 le~e~~eLk~~L~e~E~  415 (578)
                      +-..+.-++.+|-+++.
T Consensus       511 ~~~~~~~~~~~~~~l~~  527 (1486)
T PRK04863        511 LAEQLQQLRMRLSELEQ  527 (1486)
T ss_pred             HHHhhHHHHHHHHHHHH
Confidence            33444455555555554

>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=97.57  E-value=0.33  Score=57.72  Aligned_cols=53  Identities=13%  Similarity=0.154  Sum_probs=28.9

Q ss_pred             HHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008082          114 ELDAVQKQQSMDSAALGSAMNEIQRLKFQLEKVAESEAAQTKHAESAYAEMQN  166 (578)
Q Consensus       114 ele~~r~~~~~~~~~L~~~~~el~klr~qle~~~~ak~~~~k~~~~le~el~e  166 (578)
                      ++....+....-...++....+++=..++|+.....++...+....+...+..
T Consensus       480 e~~~~ekel~~~~~~~n~~~~e~~vaesel~~L~~~~~~~~~~~e~lk~~L~~  532 (1293)
T KOG0996|consen  480 EIEKLEKELMPLLKQVNEARSELDVAESELDILLSRHETGLKKVEELKGKLLA  532 (1293)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333334444444455555555556666666666666666666666654444

>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5

Probab=97.55  E-value=0.27  Score=56.20  Aligned_cols=66  Identities=24%  Similarity=0.225  Sum_probs=39.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008082          191 SESQALEDVRKSQMQLETANANLEMLRSDGIKATEAYNTLSLELELSKARVKSLEELVSKLQNDLLNSS  259 (578)
Q Consensus       191 ~~s~l~~~~~el~~qLEea~~~le~l~~e~~~l~~~~~~l~~eLe~~~~e~~~Le~ei~kL~~el~~~~  259 (578)
                      .+.+++.....+..+|..-   ...+...+..+-..+..+..+.+.....+..|+..|.+|..++....
T Consensus         5 ~l~qlq~Erd~ya~~lk~e---~a~~qqr~~qmseev~~L~eEk~~~~~~V~eLE~sL~eLk~q~~~~~   70 (617)
T PF15070_consen    5 SLKQLQAERDQYAQQLKEE---SAQWQQRMQQMSEEVRTLKEEKEHDISRVQELERSLSELKNQMAEPP   70 (617)
T ss_pred             HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccC
Confidence            4444555555554444432   22234445556666666666667777777778888888877776654

>PRK01156 chromosome segregation protein; Provisional

Probab=97.52  E-value=0.41  Score=57.44  Aligned_cols=37  Identities=14%  Similarity=0.140  Sum_probs=14.4

Q ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 008082           40 LQEDLKKAKEQLNASDSWKRRAQQEAEEAKKQLSAMS   76 (578)
Q Consensus        40 lqeeL~~eke~~~~~E~~k~~~~~ELe~~k~~~~el~   76 (578)
                      ++.+|......+...+.....+..++..++.+++.+.
T Consensus       195 ~e~eL~~~~~~i~el~~~~~~l~~~i~~~~~el~~~~  231 (895)
T PRK01156        195 SNLELENIKKQIADDEKSHSITLKEIERLSIEYNNAM  231 (895)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333333444443433333333333

>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function

Probab=97.51  E-value=0.3  Score=55.62  Aligned_cols=135  Identities=17%  Similarity=0.260  Sum_probs=76.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhHhHHhHHHHHHHHHHHHHHHHHHhH
Q 008082          281 IDKLKGELDLARNELRQLRSALDASETRYQEEYIQSTLQIRSAYEQLERAKSESSQREADLETELKNVKAQIEELRANLL  360 (578)
Q Consensus       281 i~eL~~el~~le~EieeL~s~LE~aE~~lqeE~~~~~~el~~~~e~l~~~k~E~~qr~~el~~el~~~~~eleel~~~l~  360 (578)
                      +.+|+.-+.....-+..|....+....-|-+++..+...           ..........+..++..+...+..+...+.
T Consensus       396 i~kL~~~v~~s~~rl~~L~~qWe~~R~pL~~e~r~lk~~-----------~~~~~~e~~~~~~~ik~~r~~~k~~~~e~~  464 (594)
T PF05667_consen  396 IAKLQALVEASEQRLVELAQQWEKHRAPLIEEYRRLKEK-----------ASNRESESKQKLQEIKELREEIKEIEEEIR  464 (594)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH-----------HhhcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            777777777777777777777777776666655443322           111111111122444455555555555555


Q ss_pred             hHHHHHhhHHHHHHhHHHHhcccccccchHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHH
Q 008082          361 DKETELQSISEENEGLNLKIKTNESNQRDSKLAVELNKLEAEVVEFKASILDKETELMSLTEQNGMLKMEIEN  433 (578)
Q Consensus       361 d~E~eL~~L~ee~~~L~~ei~e~~~~k~~~El~k~~kkle~e~~eLk~~L~e~E~~lq~~~~E~~~lk~~i~~  433 (578)
                      .++..+..|..+.+.+-..+.-..-.+++.|..+.++|...++.-.-.-.       -.++.+...+.-++.+
T Consensus       465 ~Kee~~~qL~~e~e~~~k~~~Rs~Yt~RIlEIv~NI~KQk~eI~KIl~DT-------r~lQkeiN~l~gkL~R  530 (594)
T PF05667_consen  465 QKEELYKQLVKELEKLPKDVNRSAYTRRILEIVKNIRKQKEEIEKILSDT-------RELQKEINSLTGKLDR  530 (594)
T ss_pred             HHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHh
Confidence            55555554544444444333222335667899999999888886655544       3444444444444443

>PRK04863 mukB cell division protein MukB; Provisional

Probab=97.50  E-value=0.57  Score=58.75  Aligned_cols=79  Identities=20%  Similarity=0.226  Sum_probs=45.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHHH---------------------HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008082           30 VSELESQLAQLQEDLKKAKEQ---------------------LNASDSWKRRAQQEAEEAKKQLSAMSARLEESQQQLLE   88 (578)
Q Consensus        30 ~~eLe~ql~~lqeeL~~eke~---------------------~~~~E~~k~~~~~ELe~~k~~~~el~~~Le~~~~~~~~   88 (578)
                      |..|+.-+....-.|+..+.-                     ..+...+|+.+.+|+-..+....+...+|+........
T Consensus       232 i~~m~~~l~~~r~t~~~~~~tq~drdlFk~lI~~~~~~~aad~~r~~eERR~liEEAag~r~rk~eA~kkLe~tE~nL~r  311 (1486)
T PRK04863        232 FQDMEAALRENRMTLEAIRVTQSDRDLFKHLITESTNYVAADYMRHANERRVHLEEALELRRELYTSRRQLAAEQYRLVE  311 (1486)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCccHHHHHHHHhhhhhhhhHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            556666666665555544411                     13456777788888777776666777777666665555


Q ss_pred             HhhhhhhHHHHHHHhhHhHh
Q 008082           89 ITTSEDTRVEELRQLSQDRD  108 (578)
Q Consensus        89 ~~e~ek~r~~El~kl~~~~e  108 (578)
                      ....-..-...+.+|..+.+
T Consensus       312 I~diL~ELe~rL~kLEkQaE  331 (1486)
T PRK04863        312 MARELAELNEAESDLEQDYQ  331 (1486)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            54444333333444444444

>PRK01156 chromosome segregation protein; Provisional

Probab=97.50  E-value=0.44  Score=57.21  Aligned_cols=30  Identities=20%  Similarity=0.339  Sum_probs=12.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008082          229 TLSLELELSKARVKSLEELVSKLQNDLLNS  258 (578)
Q Consensus       229 ~l~~eLe~~~~e~~~Le~ei~kL~~el~~~  258 (578)
                      .+...++.+..++..|...+..++..+..+
T Consensus       413 e~~~~~~~l~~~i~~l~~~i~~l~~~~~el  442 (895)
T PRK01156        413 EINVKLQDISSKVSSLNQRIRALRENLDEL  442 (895)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333334444444444444444444443333

>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins

Probab=97.45  E-value=8.5e-05  Score=86.51  Aligned_cols=28  Identities=18%  Similarity=0.286  Sum_probs=15.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008082          473 SSRRAARVTEQLDAAQAASTEMEAELRK  500 (578)
Q Consensus       473 ~~~~~~~l~eql~~ae~~~~~lEaEL~k  500 (578)
                      ....+..|...+......+..|+.+|.+
T Consensus       508 L~~~~~~Le~e~~~L~~~~~~Le~~l~~  535 (722)
T PF05557_consen  508 LQKEIEELERENERLRQELEELESELEK  535 (722)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444445555555555555566666655

The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.

>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]

Probab=97.44  E-value=0.46  Score=56.32  Aligned_cols=213  Identities=16%  Similarity=0.251  Sum_probs=98.0

Q ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhhHhHhHhHHHH
Q 008082           35 SQLAQLQEDLKKAKEQLNASDSWKRRAQQEAEEAKKQLSAMSARLEESQQQLLEITTSEDTRVEELRQLSQDRDKAWQSE  114 (578)
Q Consensus        35 ~ql~~lqeeL~~eke~~~~~E~~k~~~~~ELe~~k~~~~el~~~Le~~~~~~~~~~e~ek~r~~El~kl~~~~e~~~~~e  114 (578)
                      ++|.++.+.+-..-+.+..+...-.....++.-+++++.+...++....+     .+.-..+...+     .-+.+|-.-
T Consensus       207 T~L~qi~~~~~~~~~~~~~~~~~i~~~~e~i~~l~k~i~e~~e~~~~~~~-----~e~~~~~l~~L-----k~k~~W~~V  276 (1074)
T KOG0250|consen  207 TQLEQITESYSEIMESLDHAKELIDLKEEEIKNLKKKIKEEEEKLDNLEQ-----LEDLKENLEQL-----KAKMAWAWV  276 (1074)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHH-----HHHHHHHHH
Confidence            56677776665555666666666666666666677777766666654332     11111111111     111233322


Q ss_pred             HHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHH
Q 008082          115 LDAVQKQQSMDSAALGSAMNEIQRLKFQLEKVAESEAAQTKHAESAYAEMQNLRIELTETLSLVEKLKNELSYCKESESQ  194 (578)
Q Consensus       115 le~~r~~~~~~~~~L~~~~~el~klr~qle~~~~ak~~~~k~~~~le~el~eL~~el~e~~~eie~l~~~l~e~e~~~s~  194 (578)
                      .+. .+++......+.-.-+.+..+...++.....-..+.....+.+++++.+..+.+..-.+++.++..+.++......
T Consensus       277 ~~~-~~ql~~~~~~i~~~qek~~~l~~ki~~~~~k~~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re~~~  355 (1074)
T KOG0250|consen  277 NEV-ERQLNNQEEEIKKKQEKVDTLQEKIEEKQGKIEEARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRREVND  355 (1074)
T ss_pred             HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence            221 1122222222222222223333333333333333333333444555555555555445555555555555555555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008082          195 ALEDVRKSQMQLETANANLEMLRSDGIKATEAY-NTLSLELELSKARVKSLEELVSKLQNDLLNS  258 (578)
Q Consensus       195 l~~~~~el~~qLEea~~~le~l~~e~~~l~~~~-~~l~~eLe~~~~e~~~Le~ei~kL~~el~~~  258 (578)
                      +...+...+..+...+..++.+.+.+..+.... .++..++++....+..|..+|.+++..+..+
T Consensus       356 ~~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L  420 (1074)
T KOG0250|consen  356 LKEEIREIENSIRKLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSL  420 (1074)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            555555555555555555555555555554444 4444444444444444444444444444444

>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex

Probab=97.44  E-value=0.34  Score=54.64  Aligned_cols=131  Identities=17%  Similarity=0.218  Sum_probs=76.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 008082          390 SKLAVELNKLEAEVVEFKASILDKETELMSLTEQNGMLKMEIENREMERNKVNDEAISLAEAARVAEREALMKVGFLTEE  469 (578)
Q Consensus       390 ~El~k~~kkle~e~~eLk~~L~e~E~~lq~~~~E~~~lk~~i~~~~~e~~~~~~e~~~~le~a~~~~~~~~~kl~~l~~e  469 (578)
                      +...+.++-++..++.|+.+++.+..-+..+..++..|+.++..--.                  .-..+..++..++.+
T Consensus       583 ~~k~kq~k~lenk~~~LrKqvEnk~K~ieeLqqeNk~LKKk~~aE~k------------------q~~~~eikVn~L~~E  644 (786)
T PF05483_consen  583 LKKEKQMKILENKCNNLRKQVENKNKNIEELQQENKALKKKITAESK------------------QSNVYEIKVNKLQEE  644 (786)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHH
Confidence            56677888899999999999999999999999999999998872110                  011334556666677


Q ss_pred             HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhHH-HHHHHHHHHHhhhccCCCcchhhcccCCCCCCCCCCC
Q 008082          470 ADKSSRRAARV----TEQLDAAQAASTEMEAELRKLKVQSD-QWRKAAEAATAMLSAGNNGKFVERTGSLDGQYSPMIG  543 (578)
Q Consensus       470 le~~~~~~~~l----~eql~~ae~~~~~lEaEL~klr~q~e-q~RkaaE~~~~~L~~~~~~~~~~~~~s~~~~~~~~~~  543 (578)
                      ++.......+.    ..-++.--..-..|..++.++++-.+ ..+-..|..+.+=     -++.+=..-|++|.|.|-.
T Consensus       645 ~e~~kk~~eE~~~~~~keie~K~~~e~~L~~EveK~k~~a~EAvK~q~EtdlrCQ-----hKIAeMVALMEKHK~qYDk  718 (786)
T PF05483_consen  645 LENLKKKHEEETDKYQKEIESKSISEEELLGEVEKAKLTADEAVKLQEETDLRCQ-----HKIAEMVALMEKHKHQYDK  718 (786)
T ss_pred             HHHHHhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-----HHHHHHHHHHHHhHHHHHH
Confidence            77665433333    33333323333445555566664222 2233333333331     1233333456777776543

Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex

>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=97.40  E-value=0.53  Score=56.07  Aligned_cols=135  Identities=19%  Similarity=0.256  Sum_probs=74.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHhH
Q 008082          126 SAALGSAMNEIQRLKFQLEKVAESEAAQTKHAESAYAEMQNLRIELTET------------------LSLVEKLKNELSY  187 (578)
Q Consensus       126 ~~~L~~~~~el~klr~qle~~~~ak~~~~k~~~~le~el~eL~~el~e~------------------~~eie~l~~~l~e  187 (578)
                      -..|...+..+.++..+++.....+....+.-+.+.-.++.+..++..+                  ...-+.++..+..
T Consensus       404 ~E~lK~~~~k~kKleke~ek~~~~~~e~e~~pe~~~~~i~~~~~ei~~L~~~~~~~~~~l~e~~~~l~~~t~~~~~e~~~  483 (1293)
T KOG0996|consen  404 EEKLKRLTSKIKKLEKEIEKARRKKSELEKAPEKARIEIQKCQTEIEQLEELLEKEERELDEILDSLKQETEGIREEIEK  483 (1293)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhHHHHHhCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHH
Confidence            3344555555555555555555444444444444443333333333321                  1233345566666


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 008082          188 CKESESQALEDVRKSQMQLETANANLEMLRSDGIKATEAYNTLSLELELSKARVKSLEELVSKLQNDLLNSSN  260 (578)
Q Consensus       188 ~e~~~s~l~~~~~el~~qLEea~~~le~l~~e~~~l~~~~~~l~~eLe~~~~e~~~Le~ei~kL~~el~~~~~  260 (578)
                      .++....|...+.+...++.-++.++..|...-......+.++...|..+...+......|..+...|.+|+.
T Consensus       484 ~ekel~~~~~~~n~~~~e~~vaesel~~L~~~~~~~~~~~e~lk~~L~~~~~~~~e~~~~l~~~k~~l~~~k~  556 (1293)
T KOG0996|consen  484 LEKELMPLLKQVNEARSELDVAESELDILLSRHETGLKKVEELKGKLLASSESLKEKKTELDDLKEELPSLKQ  556 (1293)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence            6677777777777777777777777776666655556666666666666555555555555555555555543

>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.38  E-value=0.42  Score=54.45  Aligned_cols=35  Identities=23%  Similarity=0.381  Sum_probs=22.7

Q ss_pred             cccCc----chhhHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 008082           23 EKQRP----SRVSELESQLAQLQEDLKKAKEQLNASDSW   57 (578)
Q Consensus        23 ~~~~~----~~~~eLe~ql~~lqeeL~~eke~~~~~E~~   57 (578)
                      |.||.    +---||+.+-.-|.++-.++++.+.+.|++
T Consensus       315 EDKrkeNy~kGqaELerRRq~leeqqqreree~eqkEre  353 (1118)
T KOG1029|consen  315 EDKRKENYEKGQAELERRRQALEEQQQREREEVEQKERE  353 (1118)
T ss_pred             hhhhHHhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55553    444678888888887777777666555443

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=97.37  E-value=0.32  Score=56.45  Aligned_cols=26  Identities=23%  Similarity=0.330  Sum_probs=14.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008082          284 LKGELDLARNELRQLRSALDASETRY  309 (578)
Q Consensus       284 L~~el~~le~EieeL~s~LE~aE~~l  309 (578)
                      +......++.|+..|+..|...|.++
T Consensus       543 ~r~r~~~lE~E~~~lr~elk~kee~~  568 (697)
T PF09726_consen  543 CRQRRRQLESELKKLRRELKQKEEQI  568 (697)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44455666666666666555555433

; GO: 0016021 integral to membrane

>PRK11637 AmiB activator; Provisional

Probab=97.36  E-value=0.33  Score=53.23  Aligned_cols=33  Identities=3%  Similarity=0.107  Sum_probs=12.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHH
Q 008082          162 AEMQNLRIELTETLSLVEKLKNELSYCKESESQ  194 (578)
Q Consensus       162 ~el~eL~~el~e~~~eie~l~~~l~e~e~~~s~  194 (578)
                      .++..++.++......+..++.++.++...+..
T Consensus        47 ~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~   79 (428)
T PRK11637         47 DQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKK   79 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333444444444333333333333333333333

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

Probab=97.33  E-value=0.16  Score=51.10  Aligned_cols=85  Identities=21%  Similarity=0.350  Sum_probs=44.8

Q ss_pred             HHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008082          169 IELTETLSLVEKLKNELSYCKESESQALEDVRKSQMQLETANANLEMLRSDGIKATEAYNTLSLELELSKARVKSLEELV  248 (578)
Q Consensus       169 ~el~e~~~eie~l~~~l~e~e~~~s~l~~~~~el~~qLEea~~~le~l~~e~~~l~~~~~~l~~eLe~~~~e~~~Le~ei  248 (578)
                      .+++.....+.++...+.+++.++++++..+.++..++..++..+....     -...|+.|..++...+.+..+|+.+|
T Consensus        38 ~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~-----~~~e~~aL~~E~~~ak~r~~~le~el  112 (239)
T COG1579          38 AELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVK-----DERELRALNIEIQIAKERINSLEDEL  112 (239)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-----cHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333334444444455555555555555555555555555555442211     12556666666666666666666666


Q ss_pred             HHHHHHHHhh
Q 008082          249 SKLQNDLLNS  258 (578)
Q Consensus       249 ~kL~~el~~~  258 (578)
                      ..+...+..+
T Consensus       113 ~~l~~~~~~l  122 (239)
T COG1579         113 AELMEEIEKL  122 (239)
T ss_pred             HHHHHHHHHH
Confidence            6655544444

>PHA02562 46 endonuclease subunit; Provisional

Probab=97.22  E-value=0.59  Score=52.84  Aligned_cols=40  Identities=35%  Similarity=0.468  Sum_probs=23.4

Q ss_pred             HHHHHHHHHHHHHHHHHHhHhHHHHHhhHHHHHHhHHHHh
Q 008082          341 LETELKNVKAQIEELRANLLDKETELQSISEENEGLNLKI  380 (578)
Q Consensus       341 l~~el~~~~~eleel~~~l~d~E~eL~~L~ee~~~L~~ei  380 (578)
                      +......++.+++.+.....+.+.+|..+......+..++
T Consensus       356 ~~~~~~~l~~ei~~l~~~~~~~~~~l~~l~~~l~~~~~~~  395 (562)
T PHA02562        356 LVDKAKKVKAAIEELQAEFVDNAEELAKLQDELDKIVKTK  395 (562)
T ss_pred             HHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHH
Confidence            3344445566666666666666666666666666666655

>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues

Probab=97.21  E-value=0.36  Score=50.11  Aligned_cols=218  Identities=20%  Similarity=0.191  Sum_probs=116.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccc-ccccccc---
Q 008082          199 VRKSQMQLETANANLEMLRSDGIKATEAYNTLSLELELSKARVKSLEELVSKLQNDLLNSSNKLAESMG-DVHLSQK---  274 (578)
Q Consensus       199 ~~el~~qLEea~~~le~l~~e~~~l~~~~~~l~~eLe~~~~e~~~Le~ei~kL~~el~~~~~k~~~~e~-~~~~~~~---  274 (578)
                      +++....|+-+-+-=.+|-.....+...+..+...|......+..|+.+|..-..-+.-.....+..+. ......+   
T Consensus        71 LeEkerDLelaA~iGqsLl~~N~~L~~~~~~le~~L~~~~e~v~qLrHeL~~kdeLL~~ys~~~ee~~~~~~~~~~~~~~  150 (306)
T PF04849_consen   71 LEEKERDLELAARIGQSLLEQNQDLSERNEALEEQLGAALEQVEQLRHELSMKDELLQIYSNDDEESEPESSESTPLRRN  150 (306)
T ss_pred             HHHHhhhHHHHHHHhHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHhhhcccccCCCcccccc
Confidence            334444554444444566666666667777777777777777777776666544322211111000000 0000000   


Q ss_pred             -----ccchhHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhHhHHhHH
Q 008082          275 -----NGENEEIDKLKGELDLARNELRQLRSALD-------ASETRYQEEYIQSTLQIRSAYEQLERAKSESSQREADLE  342 (578)
Q Consensus       275 -----~e~~eei~eL~~el~~le~EieeL~s~LE-------~aE~~lqeE~~~~~~el~~~~e~l~~~k~E~~qr~~el~  342 (578)
                           .-..--+.-|.+++..++.|-..|+...-       ..|..-+..+.+.--++..+..++.    .+...++...
T Consensus       151 ~~~~~~~~~~~le~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~EekEqqLv~dcv~QL~~An~qia----~LseELa~k~  226 (306)
T PF04849_consen  151 ESSLSSQKCIQLEALQEKLKSLEEENEQLRSEASQLKTETDTYEEKEQQLVLDCVKQLSEANQQIA----SLSEELARKT  226 (306)
T ss_pred             ccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhcchhHH----HHHHHHHHHH
Confidence                 00011245566666666665555543222       2222222222222223333333333    3333333344


Q ss_pred             HHHHHHHHHHHHHHHHhHhHHHHHhhHHHHHHhHHHHhcccccccchHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHH
Q 008082          343 TELKNVKAQIEELRANLLDKETELQSISEENEGLNLKIKTNESNQRDSKLAVELNKLEAEVVEFKASILDKETELMSLTE  422 (578)
Q Consensus       343 ~el~~~~~eleel~~~l~d~E~eL~~L~ee~~~L~~ei~e~~~~k~~~El~k~~kkle~e~~eLk~~L~e~E~~lq~~~~  422 (578)
                      .++.....+|..|...+.+...+++.+.-+++.|..-+         ......-..|..++.+|+..+.|..+-|..+..
T Consensus       227 Ee~~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L---------~~ske~Q~~L~aEL~elqdkY~E~~~mL~EaQE  297 (306)
T PF04849_consen  227 EENRRQQEEITSLLSQIVDLQQRCKQLAAENEELQQHL---------QASKESQRQLQAELQELQDKYAECMAMLHEAQE  297 (306)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55556677788888888888888888888888888777         444444455677788888888777777777777


Q ss_pred             HHHHHHH
Q 008082          423 QNGMLKM  429 (578)
Q Consensus       423 E~~~lk~  429 (578)
                      +...++.
T Consensus       298 Elk~lR~  304 (306)
T PF04849_consen  298 ELKTLRK  304 (306)
T ss_pred             HHHHhhC
Confidence            6666543

HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].

>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms

Probab=97.21  E-value=8e-05  Score=86.62  Aligned_cols=30  Identities=30%  Similarity=0.323  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008082          473 SSRRAARVTEQLDAAQAASTEMEAELRKLK  502 (578)
Q Consensus       473 ~~~~~~~l~eql~~ae~~~~~lEaEL~klr  502 (578)
                      +...+.-+..|+..-......|+.++.+.+
T Consensus       620 ~~~e~~~L~~ql~e~~~~i~~lE~~~e~~k  649 (713)
T PF05622_consen  620 SSPEIQALKKQLQEKDRRIESLEKELEKSK  649 (713)
T ss_dssp             ------------------------------
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence            334455567788888888888888886654

The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

Probab=97.06  E-value=0.24  Score=49.81  Aligned_cols=100  Identities=23%  Similarity=0.253  Sum_probs=50.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 008082          159 SAYAEMQNLRIELTETLSLVEKLKNELSYCKESESQALEDVRKSQMQLETA--NANLEMLRSDGIKATEAYNTLSLELEL  236 (578)
Q Consensus       159 ~le~el~eL~~el~e~~~eie~l~~~l~e~e~~~s~l~~~~~el~~qLEea--~~~le~l~~e~~~l~~~~~~l~~eLe~  236 (578)
                      .+.+++..++..+..+.-+++++..+++..+..+..+...+....-.+...  .+.+.+|..++..+++...++..+|..
T Consensus        35 k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~~~e~~aL~~E~~~ak~r~~~le~el~~  114 (239)
T COG1579          35 KAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKDERELRALNIEIQIAKERINSLEDELAE  114 (239)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444555555555555555555566665555555555555555555444222  122345555555555555555555555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhh
Q 008082          237 SKARVKSLEELVSKLQNDLLNS  258 (578)
Q Consensus       237 ~~~e~~~Le~ei~kL~~el~~~  258 (578)
                      +..++..|+.++..+...+...
T Consensus       115 l~~~~~~l~~~i~~l~~~~~~~  136 (239)
T COG1579         115 LMEEIEKLEKEIEDLKERLERL  136 (239)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            5554444444444444444333

>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site

Probab=97.05  E-value=0.88  Score=51.74  Aligned_cols=136  Identities=18%  Similarity=0.238  Sum_probs=72.8

Q ss_pred             HHHhhHHHHHHhHHHHhccccc--------ccchHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHH
Q 008082          364 TELQSISEENEGLNLKIKTNES--------NQRDSKLAVELNKLEAEVVEFKASILDKETELMSLTEQNGMLKMEIENRE  435 (578)
Q Consensus       364 ~eL~~L~ee~~~L~~ei~e~~~--------~k~~~El~k~~kkle~e~~eLk~~L~e~E~~lq~~~~E~~~lk~~i~~~~  435 (578)
                      .-+..+...+..|..++.-+..        .-....+.+.++.+......+...+.+.......+......+...+...+
T Consensus       313 ~~l~~~~~~~~~l~~e~~~v~~sY~L~~~e~~~~~~l~~~l~~l~~~~~~~~~~i~~~~~~yS~i~~~l~~~~~~l~~ie  392 (560)
T PF06160_consen  313 EYLEHAKEQNKELKEELERVSQSYTLNHNELEIVRELEKQLKELEKRYEDLEERIEEQQVPYSEIQEELEEIEEQLEEIE  392 (560)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHH
Confidence            3344444566666666654211        11123333344444444444444443333333444444444444444333


Q ss_pred             HhhhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHH
Q 008082          436 MERNKVNDEAISLAEAARVAEREALMKVGFLTEEADKSSRRAARV---------TEQLDAAQAASTEMEAELRKLKV  503 (578)
Q Consensus       436 ~e~~~~~~e~~~~le~a~~~~~~~~~kl~~l~~ele~~~~~~~~l---------~eql~~ae~~~~~lEaEL~klr~  503 (578)
                      .+    -.++...+...+..+..+..++..+...+-...+.+...         ...+..+......+...|.+.+.
T Consensus       393 ~~----q~~~~~~l~~L~~dE~~Ar~~l~~~~~~l~~ikR~lek~nLPGlp~~y~~~~~~~~~~i~~l~~~L~~~pi  465 (560)
T PF06160_consen  393 EE----QEEINESLQSLRKDEKEAREKLQKLKQKLREIKRRLEKSNLPGLPEDYLDYFFDVSDEIEELSDELNQVPI  465 (560)
T ss_pred             HH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence            22    334555666777777777777777777777777666444         55666666677777777765553

EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane

>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

Probab=97.03  E-value=0.68  Score=50.08  Aligned_cols=6  Identities=33%  Similarity=1.065  Sum_probs=2.2

Q ss_pred             hhHHHh
Q 008082          564 NMLKKF  569 (578)
Q Consensus       564 ~~~~~~  569 (578)
                      +.++.|
T Consensus       306 ~il~rF  311 (420)
T COG4942         306 RILRRF  311 (420)
T ss_pred             cHHHHh
Confidence            333333

>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules

Probab=96.99  E-value=0.43  Score=47.09  Aligned_cols=123  Identities=20%  Similarity=0.274  Sum_probs=71.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 008082          224 TEAYNTLSLELELSKARVKSLEELVSKLQNDLLNSSNKLAESMGDVHLSQKNGENEEIDKLKGELDLARNELRQLRSALD  303 (578)
Q Consensus       224 ~~~~~~l~~eLe~~~~e~~~Le~ei~kL~~el~~~~~k~~~~e~~~~~~~~~e~~eei~eL~~el~~le~EieeL~s~LE  303 (578)
                      ...+..+..+.+.....+.+++.-.+.|...+...+..                   +..+..--..++..+.+...+|.
T Consensus        68 ~~~i~~~~~erdq~~~dL~s~E~sfsdl~~ryek~K~v-------------------i~~~k~NEE~Lkk~~~ey~~~l~  128 (207)
T PF05010_consen   68 EAEIQKLLKERDQAYADLNSLEKSFSDLHKRYEKQKEV-------------------IEGYKKNEETLKKCIEEYEERLK  128 (207)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHH-------------------HHHHHHhHHHHHHHHHHHHHHHH
Confidence            34444555555555555555555555555554444322                   22233333455666777777777


Q ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhHhHHhHHHHHHHHHHHHHHHHHHhHhHHHH
Q 008082          304 ASETRYQEEYIQSTLQIRSAYEQLERAKSESSQREADLETELKNVKAQIEELRANLLDKETE  365 (578)
Q Consensus       304 ~aE~~lqeE~~~~~~el~~~~e~l~~~k~E~~qr~~el~~el~~~~~eleel~~~l~d~E~e  365 (578)
                      ..+.+|+....-....+..+.+.+.+++........-+.+.+.+..-.+..|...+..+..+
T Consensus       129 ~~eqry~aLK~hAeekL~~ANeei~~v~~~~~~e~~aLqa~lkk~e~~~~SLe~~LeQK~kE  190 (207)
T PF05010_consen  129 KEEQRYQALKAHAEEKLEKANEEIAQVRSKHQAELLALQASLKKEEMKVQSLEESLEQKTKE  190 (207)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77777776666666677777777887777666666655555555555555555555444433

The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=96.93  E-value=1.2  Score=51.90  Aligned_cols=23  Identities=30%  Similarity=0.430  Sum_probs=16.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Q 008082          480 VTEQLDAAQAASTEMEAELRKLK  502 (578)
Q Consensus       480 l~eql~~ae~~~~~lEaEL~klr  502 (578)
                      ++-|++.++.....=+.||..|+
T Consensus       627 akrq~ei~~~~~~~~d~ei~~lk  649 (697)
T PF09726_consen  627 AKRQLEIAQGQLRKKDKEIEELK  649 (697)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            45566777777777777777766

; GO: 0016021 integral to membrane

>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=96.91  E-value=1.4  Score=51.82  Aligned_cols=101  Identities=21%  Similarity=0.286  Sum_probs=72.1

Q ss_pred             HHHHHHHHHHHHHHHHHHhHhHHHHHhhHHHHHHhHHHHhccc--ccccchHHHHHHHHHHHHHHHHHHHHhHhHHHHHH
Q 008082          341 LETELKNVKAQIEELRANLLDKETELQSISEENEGLNLKIKTN--ESNQRDSKLAVELNKLEAEVVEFKASILDKETELM  418 (578)
Q Consensus       341 l~~el~~~~~eleel~~~l~d~E~eL~~L~ee~~~L~~ei~e~--~~~k~~~El~k~~kkle~e~~eLk~~L~e~E~~lq  418 (578)
                      +...+..+..++++++..+.+...-++.-......+...+.+.  .-++...++.+.++.....+.+-...++..+...+
T Consensus       739 ~~~~~~~~~e~v~e~~~~Ike~~~~~k~~~~~i~~lE~~~~d~~~~re~rlkdl~keik~~k~~~e~~~~~~ek~~~e~e  818 (1174)
T KOG0933|consen  739 LLDDLKELLEEVEESEQQIKEKERALKKCEDKISTLEKKMKDAKANRERRLKDLEKEIKTAKQRAEESSKELEKRENEYE  818 (1174)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4466777788888888888777777766667777777777765  33556678888888877777777777777777777


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhh
Q 008082          419 SLTEQNGMLKMEIENREMERNKV  441 (578)
Q Consensus       419 ~~~~E~~~lk~~i~~~~~e~~~~  441 (578)
                      .+.-|.+.+...+......|++.
T Consensus       819 ~l~lE~e~l~~e~~~~k~~l~~~  841 (1174)
T KOG0933|consen  819 RLQLEHEELEKEISSLKQQLEQL  841 (1174)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            77777777777666555555433

>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]

Probab=96.88  E-value=1.1  Score=49.93  Aligned_cols=56  Identities=14%  Similarity=0.220  Sum_probs=27.3

Q ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008082          201 KSQMQLETANANLEMLRSDGIKATEAYNTLSLELELSKARVKSLEELVSKLQNDLL  256 (578)
Q Consensus       201 el~~qLEea~~~le~l~~e~~~l~~~~~~l~~eLe~~~~e~~~Le~ei~kL~~el~  256 (578)
                      .++..+...+.-+..+...-..+...++.+..+++....++..|+..+..|+..|.
T Consensus       270 ~L~~D~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie  325 (581)
T KOG0995|consen  270 RLQDDVNKFQAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIE  325 (581)
T ss_pred             HHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444444444444444444455555555555555555555555555555443

>PRK04778 septation ring formation regulator EzrA; Provisional

Probab=96.85  E-value=1.3  Score=50.49  Aligned_cols=38  Identities=13%  Similarity=0.225  Sum_probs=18.1

Q ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhccCC
Q 008082          486 AAQAASTEMEAELRKLKVQSDQWRKAAEAATAMLSAGN  523 (578)
Q Consensus       486 ~ae~~~~~lEaEL~klr~q~eq~RkaaE~~~~~L~~~~  523 (578)
                      +.++....+...+..|..+++....++...-.++.-||
T Consensus       473 ai~~e~~e~~~~~~~L~~q~~dL~~~a~~lE~~Iqy~n  510 (569)
T PRK04778        473 AVNRLLEEATEDVETLEEETEELVENATLTEQLIQYAN  510 (569)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            33334444444444444455555555555555555444

>TIGR02680 conserved hypothetical protein TIGR02680

Probab=96.80  E-value=1.5  Score=55.06  Aligned_cols=44  Identities=27%  Similarity=0.431  Sum_probs=38.3

Q ss_pred             cCcchhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 008082           25 QRPSRVSELESQLAQLQEDLKKAKEQLNASDSWKRRAQQEAEEA   68 (578)
Q Consensus        25 ~~~~~~~eLe~ql~~lqeeL~~eke~~~~~E~~k~~~~~ELe~~   68 (578)
                      -|..+|.+|+.+|..+...+......+..+...+..+..+...+
T Consensus       739 ~R~~ri~el~~~IaeL~~~i~~l~~~l~~l~~r~~~L~~e~~~~  782 (1353)
T TIGR02680       739 ARLRRIAELDARLAAVDDELAELARELRALGARQRALADELAGA  782 (1353)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            45789999999999999999999999999999999988876554

Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=96.78  E-value=0.44  Score=44.29  Aligned_cols=57  Identities=18%  Similarity=0.214  Sum_probs=34.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 008082          156 HAESAYAEMQNLRIELTETLSLVEKLKNELSYCKESESQALEDVRKSQMQLETANAN  212 (578)
Q Consensus       156 ~~~~le~el~eL~~el~e~~~eie~l~~~l~e~e~~~s~l~~~~~el~~qLEea~~~  212 (578)
                      .+..++..+..+.........+|..|..++..++..+..+...+..+...++.....
T Consensus        15 r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~   71 (143)
T PF12718_consen   15 RAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKR   71 (143)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence            444555555666666666666666666666666666666666665555555555443

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]

Probab=96.74  E-value=2.2  Score=51.39  Aligned_cols=23  Identities=17%  Similarity=0.319  Sum_probs=15.0

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHh
Q 008082          388 RDSKLAVELNKLEAEVVEFKASI  410 (578)
Q Consensus       388 ~~~El~k~~kkle~e~~eLk~~L  410 (578)
                      ....+.+..+.+..++..|+.+|
T Consensus       743 ~~~~l~r~~~~~~~~vl~Lq~~L  765 (1317)
T KOG0612|consen  743 KLNELRRSKDQLITEVLKLQSML  765 (1317)
T ss_pred             chhhhhhhHHHHHHHHHHHHHHH
Confidence            44566666666666676666666

>PF14915 CCDC144C: CCDC144C protein coiled-coil region

Probab=96.73  E-value=0.87  Score=46.82  Aligned_cols=176  Identities=14%  Similarity=0.138  Sum_probs=112.5

Q ss_pred             HhhhhhHhHHhHHHHHHHHHHHHHHHHHHhHhHHHHHhhHHHHHHhHHHHhcc------------cccccchHHHHHHHH
Q 008082          330 AKSESSQREADLETELKNVKAQIEELRANLLDKETELQSISEENEGLNLKIKT------------NESNQRDSKLAVELN  397 (578)
Q Consensus       330 ~k~E~~qr~~el~~el~~~~~eleel~~~l~d~E~eL~~L~ee~~~L~~ei~e------------~~~~k~~~El~k~~k  397 (578)
                      ....+...+..+.++...+.+.++.-+..-...|+++.+...   .|.+.|.+            +...+...|+....-
T Consensus        57 Ti~qy~~QLn~L~aENt~L~SkLe~EKq~kerLEtEiES~rs---RLaaAi~d~dqsq~skrdlelafqr~rdEw~~lqd  133 (305)
T PF14915_consen   57 TIFQYNGQLNVLKAENTMLNSKLEKEKQNKERLETEIESYRS---RLAAAIQDHDQSQTSKRDLELAFQRARDEWVRLQD  133 (305)
T ss_pred             HHHHHhhhHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHH---HHHHHHhhHHHHHhhHHHHHHHHHHHhhHHHHHHH
Confidence            334444444445555555555555444444444444444321   11111111            133455667777777


Q ss_pred             HHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH---HHHHHHHHHHHHHHhhHHHHHHHHH
Q 008082          398 KLEAEVVEFKASILDKETELMSLTEQNGMLKMEIENREMERNKVNDEAISLA---EAARVAEREALMKVGFLTEEADKSS  474 (578)
Q Consensus       398 kle~e~~eLk~~L~e~E~~lq~~~~E~~~lk~~i~~~~~e~~~~~~e~~~~l---e~a~~~~~~~~~kl~~l~~ele~~~  474 (578)
                      +|..++..|+-..       +.+..+++.+...++.++.+++...+.++..-   |.+.+--..++-+++.++.......
T Consensus       134 kmn~d~S~lkd~n-------e~LsQqLskaesK~nsLe~elh~trdaLrEKtL~lE~~QrdL~Qtq~q~KE~e~m~qne~  206 (305)
T PF14915_consen  134 KMNSDVSNLKDNN-------EILSQQLSKAESKFNSLEIELHHTRDALREKTLALESVQRDLSQTQCQIKEIEHMYQNEQ  206 (305)
T ss_pred             HhcchHHhHHHHh-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence            7777777777766       66777777777777777777777776666543   6666666677778888888888877


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 008082          475 RRAARVTEQLDAAQAASTEMEAELRKLKVQSDQWRKAAEAA  515 (578)
Q Consensus       475 ~~~~~l~eql~~ae~~~~~lEaEL~klr~q~eq~RkaaE~~  515 (578)
                      ..+......-+..+.+..-++.+---|+.|.+.+.+.+...
T Consensus       207 ~kv~k~~~Kqes~eERL~QlqsEN~LLrQQLddA~~K~~~k  247 (305)
T PF14915_consen  207 DKVNKYIGKQESLEERLSQLQSENMLLRQQLDDAHNKADNK  247 (305)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77777777777777787778888777777888887777653

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=96.73  E-value=0.35  Score=44.96  Aligned_cols=58  Identities=22%  Similarity=0.436  Sum_probs=42.9

Q ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 008082          458 EALMKVGFLTEEADKSSRRAARVTEQLDAAQAASTEMEAELRKLKVQSDQWRKAAEAA  515 (578)
Q Consensus       458 ~~~~kl~~l~~ele~~~~~~~~l~eql~~ae~~~~~lEaEL~klr~q~eq~RkaaE~~  515 (578)
                      .+..++..|+.+|+.+...+..+.+.|..+......++.....|-.+.+.|=+..+..
T Consensus        77 ~l~rriq~LEeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~eel  134 (143)
T PF12718_consen   77 QLNRRIQLLEEELEEAEKKLKETTEKLREADVKAEHFERKVKALEQERDQWEEKYEEL  134 (143)
T ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            4555667778888888777778888888888888888888777777777776555543

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].

>PF13514 AAA_27: AAA domain

Probab=96.70  E-value=2.6  Score=51.93  Aligned_cols=57  Identities=14%  Similarity=0.215  Sum_probs=29.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHhhhccCC
Q 008082          467 TEEADKSSRRAARVTEQLDAAQAASTEMEAELRKLKVQ-SDQWRKAAEAATAMLSAGN  523 (578)
Q Consensus       467 ~~ele~~~~~~~~l~eql~~ae~~~~~lEaEL~klr~q-~eq~RkaaE~~~~~L~~~~  523 (578)
                      ..+.......+.++..+.....-+...|..-+.+++.. ....-..+......|.+|.
T Consensus       939 ~~e~e~~~a~l~~~~~~~~~~~la~~lL~~a~~~~r~~~~p~vl~~As~~f~~LT~G~  996 (1111)
T PF13514_consen  939 EQEREEAEAELEELAEEWAALRLAAELLEEAIERYREERQPPVLARASEYFSRLTGGR  996 (1111)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhCCC
Confidence            34444444555555555555566666666666666531 1222334556666666543

>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]

Probab=96.68  E-value=0.97  Score=46.63  Aligned_cols=38  Identities=24%  Similarity=0.450  Sum_probs=17.5

Q ss_pred             HHHHHHHHHHHHHHHHhHhHHHHHhhHHHHHHhHHHHh
Q 008082          343 TELKNVKAQIEELRANLLDKETELQSISEENEGLNLKI  380 (578)
Q Consensus       343 ~el~~~~~eleel~~~l~d~E~eL~~L~ee~~~L~~ei  380 (578)
                      ..+..+.++++.++....+.-.++..|..+......++
T Consensus       158 ~~~~el~aei~~lk~~~~e~~eki~~la~eaqe~he~m  195 (294)
T COG1340         158 EKLKELKAEIDELKKKAREIHEKIQELANEAQEYHEEM  195 (294)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444445555555555444444444444444444333

>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease

Probab=96.65  E-value=0.75  Score=45.00  Aligned_cols=178  Identities=17%  Similarity=0.196  Sum_probs=81.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 008082          159 SAYAEMQNLRIELTETLSLVEKLKNELSYCKESESQALEDVRKSQMQLETANANLEMLRSDGIKATEAYNTLSLELELSK  238 (578)
Q Consensus       159 ~le~el~eL~~el~e~~~eie~l~~~l~e~e~~~s~l~~~~~el~~qLEea~~~le~l~~e~~~l~~~~~~l~~eLe~~~  238 (578)
                      .+..++.++..++.++..+.--|+.-.---+.++..+...-.++-.-+..-..++..|...+...+..+..+...+-...
T Consensus        16 ~L~n~l~elq~~l~~l~~ENk~Lk~lq~Rq~kAL~k~e~~e~~Lpqll~~h~eEvr~Lr~~LR~~q~~~r~~~~klk~~~   95 (194)
T PF15619_consen   16 ELQNELAELQRKLQELRKENKTLKQLQKRQEKALQKYEDTEAELPQLLQRHNEEVRVLRERLRKSQEQERELERKLKDKD   95 (194)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55555666666666655555555444333344444444434444444455555555555555555555555444444444


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhhhccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 008082          239 ARVKSLEELVSKLQNDLLNSSNKLAESMGDVHLSQKNGENEEIDKLKGELDLARNELRQLRSALDASETRYQEEYIQSTL  318 (578)
Q Consensus       239 ~e~~~Le~ei~kL~~el~~~~~k~~~~e~~~~~~~~~e~~eei~eL~~el~~le~EieeL~s~LE~aE~~lqeE~~~~~~  318 (578)
                      .++..+...+..|..-..   .++.               .+..+|...+..+...+..-...+...+..+.-.....  
T Consensus        96 ~el~k~~~~l~~L~~L~~---dknL---------------~eReeL~~kL~~~~~~l~~~~~ki~~Lek~leL~~k~~--  155 (194)
T PF15619_consen   96 EELLKTKDELKHLKKLSE---DKNL---------------AEREELQRKLSQLEQKLQEKEKKIQELEKQLELENKSF--  155 (194)
T ss_pred             HHHHHHHHHHHHHHHHHH---cCCc---------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH--
Confidence            444444444444332211   1111               12344444444444444333333333332222111111  


Q ss_pred             HHHHHHHHHHHHhhhhhHhHHhHHHHHHHHHHHHHHHHHHhHhHHHH
Q 008082          319 QIRSAYEQLERAKSESSQREADLETELKNVKAQIEELRANLLDKETE  365 (578)
Q Consensus       319 el~~~~e~l~~~k~E~~qr~~el~~el~~~~~eleel~~~l~d~E~e  365 (578)
                               .+.-.--..+..+++.++..+..++..+...+.+++.+
T Consensus       156 ---------~rql~~e~kK~~~~~~~~~~l~~ei~~L~~klkEKer~  193 (194)
T PF15619_consen  156 ---------RRQLASEKKKHKEAQEEVKSLQEEIQRLNQKLKEKERE  193 (194)
T ss_pred             ---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence                     11111123344556677777777777777777766543

>PRK04778 septation ring formation regulator EzrA; Provisional

Probab=96.60  E-value=1.9  Score=49.09  Aligned_cols=134  Identities=17%  Similarity=0.151  Sum_probs=65.7

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhhHhHh
Q 008082           29 RVSELESQLAQLQEDLKKAKEQLNASDSWKRRAQQEAEEAKKQLSAMSARLEESQQQLLEITTSEDTRVEELRQLSQDRD  108 (578)
Q Consensus        29 ~~~eLe~ql~~lqeeL~~eke~~~~~E~~k~~~~~ELe~~k~~~~el~~~Le~~~~~~~~~~e~ek~r~~El~kl~~~~e  108 (578)
                      .+...+..|..+.+.+.+-+..  ++-..-.+       +...++.....+...........+.+++--.++..++..-.
T Consensus        80 ~~~~ie~~l~~ae~~~~~~~f~--~a~~~~~~-------~~~~l~~~e~~~~~i~~~l~~l~~~e~~nr~~v~~l~~~y~  150 (569)
T PRK04778         80 SLPDIEEQLFEAEELNDKFRFR--KAKHEINE-------IESLLDLIEEDIEQILEELQELLESEEKNREEVEQLKDLYR  150 (569)
T ss_pred             hhhhHHHHHHHHHHHHhcccHH--HHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344555566666555544432  22222222       33334444444444444444444555444444433332221


Q ss_pred             HhHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH
Q 008082          109 KAWQSELDAVQKQQSMDSAALGSAMNEIQRLKFQLEKVAES--EAAQTKHAESAYAEMQNLRIELT  172 (578)
Q Consensus       109 ~~~~~ele~~r~~~~~~~~~L~~~~~el~klr~qle~~~~a--k~~~~k~~~~le~el~eL~~el~  172 (578)
                       .+...+-+-+-.|......|...+.++...-.+|+....+  +..|-.....+..++..|...+.
T Consensus       151 -~~rk~ll~~~~~~G~a~~~le~~l~~~e~~f~~f~~l~~~Gd~~~A~e~l~~l~~~~~~l~~~~~  215 (569)
T PRK04778        151 -ELRKSLLANRFSFGPALDELEKQLENLEEEFSQFVELTESGDYVEAREILDQLEEELAALEQIME  215 (569)
T ss_pred             -HHHHHHHhcCccccchHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence             1233333333447777788888888888888888744332  34444444445544444444443

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.58  E-value=1.4  Score=50.72  Aligned_cols=89  Identities=21%  Similarity=0.266  Sum_probs=40.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008082          166 NLRIELTETLSLVEKLKNELSYCKESESQALEDVRKSQMQLETANANLEMLRSDGIKATEAYNTLSLELELSKARVKSLE  245 (578)
Q Consensus       166 eL~~el~e~~~eie~l~~~l~e~e~~~s~l~~~~~el~~qLEea~~~le~l~~e~~~l~~~~~~l~~eLe~~~~e~~~Le  245 (578)
                      ++..++.+.-..+.++..++...+..++-+...+....--++.+...--.+..+...++..+..+...+......+..+.
T Consensus       796 El~~~l~e~~~~l~~~q~e~~~~keq~~t~~~~tsa~a~~le~m~~~~~~la~e~~~ieq~ls~l~~~~k~~~nli~~lt  875 (970)
T KOG0946|consen  796 ELLKNLSEESTRLQELQSELTQLKEQIQTLLERTSAAADSLESMGSTEKNLANELKLIEQKLSNLQEKIKFGNNLIKELT  875 (970)
T ss_pred             HHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhccccchhhHHHHHHHHHHHHHHHhhhhhhHHHHHh
Confidence            33333333333333444444444444444444444333444444433334444445555555555555555555555555


Q ss_pred             HHHHHHHHH
Q 008082          246 ELVSKLQND  254 (578)
Q Consensus       246 ~ei~kL~~e  254 (578)
                      +.++.|..+
T Consensus       876 Ek~~sl~~q  884 (970)
T KOG0946|consen  876 EKISSLEAQ  884 (970)
T ss_pred             hhhhhHHHh
Confidence            555555543

>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]

Probab=96.49  E-value=2.9  Score=49.91  Aligned_cols=43  Identities=16%  Similarity=0.193  Sum_probs=19.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHH
Q 008082          155 KHAESAYAEMQNLRIELTETLSLVEKLKNELSYCKESESQALE  197 (578)
Q Consensus       155 k~~~~le~el~eL~~el~e~~~eie~l~~~l~e~e~~~s~l~~  197 (578)
                      ..+..|.++....+...+.+...++.+..-++.++.+--.++.
T Consensus      1542 ~ra~~L~s~A~~a~~~A~~v~~~ae~V~eaL~~Ad~Aq~~a~~ 1584 (1758)
T KOG0994|consen 1542 ARAENLQSEAERARSRAEDVKGQAEDVVEALEEADVAQGEAQD 1584 (1758)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344455544444444444444444444444444444333333

>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=96.48  E-value=2.4  Score=48.71  Aligned_cols=6  Identities=33%  Similarity=0.407  Sum_probs=3.1

Q ss_pred             ccccCc
Q 008082           22 LEKQRP   27 (578)
Q Consensus        22 ~~~~~~   27 (578)
                      |++|=|
T Consensus       304 p~kklP  309 (1118)
T KOG1029|consen  304 PPKKLP  309 (1118)
T ss_pred             ccccCC
Confidence            345556

>PRK09039 hypothetical protein; Validated

Probab=96.46  E-value=0.62  Score=49.65  Aligned_cols=28  Identities=39%  Similarity=0.582  Sum_probs=16.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008082          281 IDKLKGELDLARNELRQLRSALDASETR  308 (578)
Q Consensus       281 i~eL~~el~~le~EieeL~s~LE~aE~~  308 (578)
                      +..|..++..++..+..|.+.|..++.+
T Consensus       139 V~~L~~qI~aLr~Qla~le~~L~~ae~~  166 (343)
T PRK09039        139 VELLNQQIAALRRQLAALEAALDASEKR  166 (343)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5555556666666666666666655544

>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms

Probab=96.30  E-value=0.001  Score=77.51  Aligned_cols=12  Identities=50%  Similarity=0.509  Sum_probs=0.0

Q ss_pred             HHHHHHHHhhhc
Q 008082          509 RKAAEAATAMLS  520 (578)
Q Consensus       509 RkaaE~~~~~L~  520 (578)
                      |.+.+..++.++
T Consensus       672 ~~~~~~r~~~~~  683 (713)
T PF05622_consen  672 REAMESRLAALS  683 (713)
T ss_dssp             ------------
T ss_pred             HHHHHhhcccCC
Confidence            556665555553

The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.

>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]

Probab=96.11  E-value=4.6  Score=48.31  Aligned_cols=130  Identities=11%  Similarity=0.155  Sum_probs=82.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hHhHHHHHHHHHHHHHHHHHHH
Q 008082          129 LGSAMNEIQRLKFQLEKVAESEAAQTKHAESAYAEMQNLRIELTETLSLVEKLKNEL-SYCKESESQALEDVRKSQMQLE  207 (578)
Q Consensus       129 L~~~~~el~klr~qle~~~~ak~~~~k~~~~le~el~eL~~el~e~~~eie~l~~~l-~e~e~~~s~l~~~~~el~~qLE  207 (578)
                      .+.+-.++..++..+...........-........+..++..++.....|.++..+. ........+...+++.+..+++
T Consensus       332 ~~~~d~Ei~~~r~~~~~~~re~~~~~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~eve  411 (1074)
T KOG0250|consen  332 VDAQDEEIEEARKDLDDLRREVNDLKEEIREIENSIRKLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVE  411 (1074)
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Confidence            344444677777777766666666655555666666777777777777777776666 5666666666666666666666


Q ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008082          208 TANANLEMLRSDGIKATEAYNTLSLELELSKARVKSLEELVSKLQNDLLNS  258 (578)
Q Consensus       208 ea~~~le~l~~e~~~l~~~~~~l~~eLe~~~~e~~~Le~ei~kL~~el~~~  258 (578)
                      .++..+..|..+...+..++.....++...+..+..|...|+-....|..+
T Consensus       412 k~e~~~~~L~~e~~~~~~~~~~~~ee~~~i~~~i~~l~k~i~~~~~~l~~l  462 (1074)
T KOG0250|consen  412 KLEEQINSLREELNEVKEKAKEEEEEKEHIEGEILQLRKKIENISEELKDL  462 (1074)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            666666666666666666666666666666666655555555555444333

>PRK09039 hypothetical protein; Validated

Probab=95.95  E-value=2.6  Score=45.00  Aligned_cols=40  Identities=15%  Similarity=0.145  Sum_probs=16.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008082          219 DGIKATEAYNTLSLELELSKARVKSLEELVSKLQNDLLNS  258 (578)
Q Consensus       219 e~~~l~~~~~~l~~eLe~~~~e~~~Le~ei~kL~~el~~~  258 (578)
                      ++...+..|.+..-++..++.+|..|+.++..|+..|...
T Consensus       124 ~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~a  163 (343)
T PRK09039        124 ELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDAS  163 (343)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333334444444444444444444444433

>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]

Probab=95.87  E-value=4  Score=45.57  Aligned_cols=46  Identities=11%  Similarity=0.018  Sum_probs=26.6

Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHH
Q 008082          387 QRDSKLAVELNKLEAEVVEFKASILDKETELMSLTEQNGMLKMEIE  432 (578)
Q Consensus       387 k~~~El~k~~kkle~e~~eLk~~L~e~E~~lq~~~~E~~~lk~~i~  432 (578)
                      +...|+.+.-+.+....-.+..++.+++..++.+..+...+...++
T Consensus       489 k~~~E~e~le~~l~~l~l~~~~~m~~a~~~v~s~e~el~~~~~~~~  534 (581)
T KOG0995|consen  489 KCRKEIEKLEEELLNLKLVLNTSMKEAEELVKSIELELDRMVATGE  534 (581)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3345555555555555566666666666666666555554444443

>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease

Probab=95.85  E-value=2  Score=42.03  Aligned_cols=31  Identities=23%  Similarity=0.437  Sum_probs=24.0

Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHhHhHHHHH
Q 008082          387 QRDSKLAVELNKLEAEVVEFKASILDKETEL  417 (578)
Q Consensus       387 k~~~El~k~~kkle~e~~eLk~~L~e~E~~l  417 (578)
                      +..+++...++.+..++..|...|.|++..|
T Consensus       164 kK~~~~~~~~~~l~~ei~~L~~klkEKer~L  194 (194)
T PF15619_consen  164 KKHKEAQEEVKSLQEEIQRLNQKLKEKEREL  194 (194)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence            5567888888888888888888888777643

>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]

Probab=95.82  E-value=5.3  Score=46.64  Aligned_cols=120  Identities=19%  Similarity=0.176  Sum_probs=54.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Q 008082          129 LGSAMNEIQRLKFQLEKVAESEAAQTKHAESAYAEMQNLRIELT-------ETLSLVEKLKNELSYCKESESQALEDVRK  201 (578)
Q Consensus       129 L~~~~~el~klr~qle~~~~ak~~~~k~~~~le~el~eL~~el~-------e~~~eie~l~~~l~e~e~~~s~l~~~~~e  201 (578)
                      |.....++...|.+++.+.-.-....+++-..+.+.+.++..+.       +++.-..++..+++..+..+....+....
T Consensus       391 Lr~elaql~a~r~q~eka~~~~ee~e~~~l~~e~ry~klkek~t~l~~~h~~lL~K~~di~kQle~~~~s~~~~~~~~~~  470 (980)
T KOG0980|consen  391 LRNELAQLLASRTQLEKAQVLVEEAENKALAAENRYEKLKEKYTELRQEHADLLRKYDDIQKQLESAEQSIDDVEEENTN  470 (980)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence            44444455555555555553333344433344444444444333       33444444555555555555544444444


Q ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008082          202 SQMQLETANANLEMLRSDGIKATEAYNTLSLELELSKARVKSLEELVSKLQNDL  255 (578)
Q Consensus       202 l~~qLEea~~~le~l~~e~~~l~~~~~~l~~eLe~~~~e~~~Le~ei~kL~~el  255 (578)
                      +.-+|+++.+....       +...+++....++.++.++..|..++..|+..+
T Consensus       471 L~d~le~~~~~~~~-------~~~K~e~~~~~le~l~~El~~l~~e~~~lq~~~  517 (980)
T KOG0980|consen  471 LNDQLEELQRAAGR-------AETKTESQAKALESLRQELALLLIELEELQRTL  517 (980)
T ss_pred             HHHHHHHHHHHHHH-------HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            44444444444443       333344444444444444444444444444443

>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.55  E-value=5.1  Score=44.48  Aligned_cols=51  Identities=20%  Similarity=0.182  Sum_probs=33.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 008082          390 SKLAVELNKLEAEVVEFKASILDKETELMSLTEQNGMLKMEIENREMERNK  440 (578)
Q Consensus       390 ~El~k~~kkle~e~~eLk~~L~e~E~~lq~~~~E~~~lk~~i~~~~~e~~~  440 (578)
                      .-|..+++.++.+...|-+.|-|..+.+....-.+.....++..+...+++
T Consensus       321 qkLkqqL~smErek~~l~anL~dtqt~le~T~~~l~~~~er~~~l~e~v~a  371 (772)
T KOG0999|consen  321 QKLKQQLMSMEREKAELLANLQDTQTQLEHTEGDLMEQRERVDRLTEHVQA  371 (772)
T ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHhhccchhHHHHHHHHHHHHHHHHHH
Confidence            345555666777888888888888888777755555555555554444443

>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]

Probab=95.53  E-value=7.2  Score=46.12  Aligned_cols=51  Identities=20%  Similarity=0.342  Sum_probs=23.9

Q ss_pred             hhhHHHHHHHHHHHHHHHHH---HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008082           29 RVSELESQLAQLQEDLKKAK---EQLNASDSWKRRAQQEAEEAKKQLSAMSARLEE   81 (578)
Q Consensus        29 ~~~eLe~ql~~lqeeL~~ek---e~~~~~E~~k~~~~~ELe~~k~~~~el~~~Le~   81 (578)
                      +|.+|-.-|.+=-.+|+.+|   ..-++.++.|+-+.==+  --+++.+...+|+.
T Consensus       188 kI~ell~yieerLreLEeEKeeL~~Yqkldk~rr~lEYti--YdrEl~E~~~~l~~  241 (1200)
T KOG0964|consen  188 KINELLKYIEERLRELEEEKEELEKYQKLDKERRSLEYTI--YDRELNEINGELER  241 (1200)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHhhhhhhh--hhhHHHHHHHHHHH
Confidence            44454444444444555555   33445556666554222  22444444444444

>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function

Probab=95.42  E-value=6.6  Score=44.96  Aligned_cols=138  Identities=17%  Similarity=0.286  Sum_probs=72.1

Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHhhhhh
Q 008082           28 SRVSELESQLAQLQEDLKKAKEQLNASDSWKRRAQQEAEEAKKQLSAMSARLEE-------------SQQQLLEITTSED   94 (578)
Q Consensus        28 ~~~~eLe~ql~~lqeeL~~eke~~~~~E~~k~~~~~ELe~~k~~~~el~~~Le~-------------~~~~~~~~~e~ek   94 (578)
                      ..+.+|+.+|..+..++......+........++..+++..+....++...+.-             --.++....+...
T Consensus       328 ~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~~k~~~lL~d~e~ni~kL~~~v~~s~  407 (594)
T PF05667_consen  328 QELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLKKKTVELLPDAEENIAKLQALVEASE  407 (594)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHH
Confidence            445555566666665555555555555555555555555554444444333221             1122333334444


Q ss_pred             hHHHHHHHhhHhHh---HhHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008082           95 TRVEELRQLSQDRD---KAWQSELDAVQKQQSMDSAALGSAMNEIQRLKFQLEKVAESEAAQTKHAESAYAEMQNLR  168 (578)
Q Consensus        95 ~r~~El~kl~~~~e---~~~~~ele~~r~~~~~~~~~L~~~~~el~klr~qle~~~~ak~~~~k~~~~le~el~eL~  168 (578)
                      .+..+|.   .+-+   ..+-.++..++..+..-..+....+++|+.++.++..+..--..-......|..++..+.
T Consensus       408 ~rl~~L~---~qWe~~R~pL~~e~r~lk~~~~~~~~e~~~~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~~  481 (594)
T PF05667_consen  408 QRLVELA---QQWEKHRAPLIEEYRRLKEKASNRESESKQKLQEIKELREEIKEIEEEIRQKEELYKQLVKELEKLP  481 (594)
T ss_pred             HHHHHHH---HHHHHHHhHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            4444432   2222   335567777777766666666777788888888877544433333333334444444443

>PF14662 CCDC155: Coiled-coil region of CCDC155

Probab=95.34  E-value=2.9  Score=40.47  Aligned_cols=40  Identities=25%  Similarity=0.308  Sum_probs=21.5

Q ss_pred             HHHHhhhhhHhHHhHHHHHHHHHHHHHHHHHHhHhHHHHH
Q 008082          327 LERAKSESSQREADLETELKNVKAQIEELRANLLDKETEL  366 (578)
Q Consensus       327 l~~~k~E~~qr~~el~~el~~~~~eleel~~~l~d~E~eL  366 (578)
                      .+.+-++..+++.++..-+..+..-..+++......|.-|
T Consensus       149 ~da~l~e~t~~i~eL~~~ieEy~~~teeLR~e~s~LEeql  188 (193)
T PF14662_consen  149 RDAILSERTQQIEELKKTIEEYRSITEELRLEKSRLEEQL  188 (193)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344445555666565555555555555555555444433

>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed

Probab=95.24  E-value=4.8  Score=42.30  Aligned_cols=82  Identities=15%  Similarity=0.205  Sum_probs=45.4

Q ss_pred             HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccccccccccchhHHHHHHHHHHHH
Q 008082          212 NLEMLRSDGIKATEAYNTLSLELELSKARVKSLEELVSKLQNDLLNSSNKLAESMGDVHLSQKNGENEEIDKLKGELDLA  291 (578)
Q Consensus       212 ~le~l~~e~~~l~~~~~~l~~eLe~~~~e~~~Le~ei~kL~~el~~~~~k~~~~e~~~~~~~~~e~~eei~eL~~el~~l  291 (578)
                      .+......+....+.+.....-+...+.++..+...+.+|..+...|+.+++.            .+.-+..+..+....
T Consensus       217 QL~~Y~~Kf~efq~tL~kSNe~F~tfk~Emekm~Kk~kklEKE~~~~k~k~e~------------~n~~l~~m~eer~~~  284 (309)
T PF09728_consen  217 QLNLYSEKFEEFQDTLNKSNEVFETFKKEMEKMSKKIKKLEKENQTWKSKWEK------------SNKALIEMAEERQKL  284 (309)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HhHHHHHHHHHHHHH
Confidence            33333333344444444444445556666777777777788888888877742            112255555555555


Q ss_pred             HHHHHHHHHHHHHH
Q 008082          292 RNELRQLRSALDAS  305 (578)
Q Consensus       292 e~EieeL~s~LE~a  305 (578)
                      ..++..+...+...
T Consensus       285 ~~~~~~~~~k~~kL  298 (309)
T PF09728_consen  285 EKELEKLKKKIEKL  298 (309)
T ss_pred             HHHHHHHHHHHHHH
Confidence            55555555444433

It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].

>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain

Probab=95.20  E-value=4.7  Score=41.99  Aligned_cols=77  Identities=26%  Similarity=0.254  Sum_probs=42.4

Q ss_pred             HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccccccccccchhH--HHHHHHHHHHHH
Q 008082          215 MLRSDGIKATEAYNTLSLELELSKARVKSLEELVSKLQNDLLNSSNKLAESMGDVHLSQKNGENEE--IDKLKGELDLAR  292 (578)
Q Consensus       215 ~l~~e~~~l~~~~~~l~~eLe~~~~e~~~Le~ei~kL~~el~~~~~k~~~~e~~~~~~~~~e~~ee--i~eL~~el~~le  292 (578)
                      .+...+..+...+..+..+++..+...+.|..++..|...-..+..+.+             ..++  .+-|-+.+..++
T Consensus        24 ~l~~~~~sL~qen~~Lk~El~~ek~~~~~L~~e~~~lr~~sv~~~~~aE-------------qEEE~isN~LlKkl~~l~   90 (310)
T PF09755_consen   24 QLRKRIESLQQENRVLKRELETEKARCKHLQEENRALREASVRIQAKAE-------------QEEEFISNTLLKKLQQLK   90 (310)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHH
Confidence            3444445555555555666666666666666666666655444433321             1222  556666666666


Q ss_pred             HHHHHHHHHHHH
Q 008082          293 NELRQLRSALDA  304 (578)
Q Consensus       293 ~EieeL~s~LE~  304 (578)
                      .+.+.|--.++.
T Consensus        91 keKe~L~~~~e~  102 (310)
T PF09755_consen   91 KEKETLALKYEQ  102 (310)
T ss_pred             HHHHHHHHHHHH
Confidence            666666555543

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]

Probab=95.01  E-value=12  Score=45.51  Aligned_cols=59  Identities=22%  Similarity=0.231  Sum_probs=22.2

Q ss_pred             HHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 008082          181 LKNELSYCKESESQALEDVRKSQMQLETANANLEMLRSDGIKATEAYNTLSLELELSKA  239 (578)
Q Consensus       181 l~~~l~e~e~~~s~l~~~~~el~~qLEea~~~le~l~~e~~~l~~~~~~l~~eLe~~~~  239 (578)
                      +...+..++.....+......+...++...+.-....-.+..++..+.++...+.....
T Consensus       586 ~~d~l~~le~~k~~ls~~~~~~~~~~e~~~~~~~~~~e~~~~l~~~i~sL~~~~~~~~~  644 (1317)
T KOG0612|consen  586 LEDKLSLLEESKSKLSKENKKLRSELEKERRQRTEISEIIAELKEEISSLEETLKAGKK  644 (1317)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhh
Confidence            33334444444344333333333333333333333333333333344444333333333

>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5

Probab=94.87  E-value=9.6  Score=43.85  Aligned_cols=46  Identities=22%  Similarity=0.234  Sum_probs=31.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHH
Q 008082          390 SKLAVELNKLEAEVVEFKASILDKETELMSLTEQNGMLKMEIENRE  435 (578)
Q Consensus       390 ~El~k~~kkle~e~~eLk~~L~e~E~~lq~~~~E~~~lk~~i~~~~  435 (578)
                      -+|.+.+-.++..+..++..+..+...++.+..+...+-..+..+.
T Consensus       198 keL~~kl~~l~~~l~~~~e~le~K~qE~~~Lq~q~dq~~~~Lqqy~  243 (617)
T PF15070_consen  198 KELQKKLGELQEKLHNLKEKLELKSQEAQSLQEQRDQYLGHLQQYV  243 (617)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            3666666677788888888887777777777666666555555443

>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]

Probab=94.74  E-value=4.4  Score=39.32  Aligned_cols=113  Identities=16%  Similarity=0.194  Sum_probs=64.8

Q ss_pred             HHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008082          175 LSLVEKLKNELSYCKESESQALEDVRKSQMQLETANANLEMLRSDGIKATEAYNTLSLELELSKARVKSLEELVSKLQND  254 (578)
Q Consensus       175 ~~eie~l~~~l~e~e~~~s~l~~~~~el~~qLEea~~~le~l~~e~~~l~~~~~~l~~eLe~~~~e~~~Le~ei~kL~~e  254 (578)
                      ..+|..++..+.-++.....|+..+..+..+|.++......-..-.       ..+....       ..+++.+..+..+
T Consensus         3 e~~va~lnrri~~leeele~aqErl~~a~~KL~Eaeq~~dE~er~~-------Kv~enr~-------~kdEE~~e~~e~q   68 (205)
T KOG1003|consen    3 EADVAALNRRIQLLEEELDRAQERLATALQKLEEAEQAADESERGM-------KVIENRA-------QKLEEKMEAQEAQ   68 (205)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHH-------HHHHHHH-------HhhHHHHHHHHHH
Confidence            3466677777777777777777777777777777766654322222       2222222       2233333333333


Q ss_pred             HHhhhhhhhhccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008082          255 LLNSSNKLAESMGDVHLSQKNGENEEIDKLKGELDLARNELRQLRSALDASETRYQEEY  313 (578)
Q Consensus       255 l~~~~~k~~~~e~~~~~~~~~e~~eei~eL~~el~~le~EieeL~s~LE~aE~~lqeE~  313 (578)
                      +.+.+--  .        +  ++...+.++.+.+.-++..++....+.+.+++.+.+..
T Consensus        69 LkEAk~i--a--------E--~adrK~eEVarkL~iiE~dLE~~eeraE~~Es~~~eLe  115 (205)
T KOG1003|consen   69 LKEAKHI--A--------E--KADRKYEEVARKLVIIEGELERAEERAEAAESQSEELE  115 (205)
T ss_pred             HHHHHHH--H--------H--HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence            3333110  0        0  12234667777888888888888888888777765433

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=94.66  E-value=5.6  Score=42.03  Aligned_cols=52  Identities=21%  Similarity=0.221  Sum_probs=20.9

Q ss_pred             HHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 008082          177 LVEKLKNELSYCKESESQALEDVRKSQMQLETANANLEMLRSDGIKATEAYN  228 (578)
Q Consensus       177 eie~l~~~l~e~e~~~s~l~~~~~el~~qLEea~~~le~l~~e~~~l~~~~~  228 (578)
                      ++..++..+.+....+......+.+++.++......++.+......+...+.
T Consensus       210 eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~  261 (325)
T PF08317_consen  210 ELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIA  261 (325)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334444444444444444444444444444444444333333333333333

>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

Probab=94.65  E-value=8.1  Score=42.00  Aligned_cols=17  Identities=29%  Similarity=0.479  Sum_probs=10.1

Q ss_pred             CcchhhcccCCCCCCCC
Q 008082          524 NGKFVERTGSLDGQYSP  540 (578)
Q Consensus       524 ~~~~~~~~~s~~~~~~~  540 (578)
                      +|.++-|.|+-+.+-+.
T Consensus       304 ~G~il~rFG~~~~gg~~  320 (420)
T COG4942         304 TGRILRRFGQADGGGLR  320 (420)
T ss_pred             CCcHHHHhcccCCCCcc
Confidence            66666666665554433

>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants

Probab=94.64  E-value=12  Score=44.00  Aligned_cols=145  Identities=26%  Similarity=0.290  Sum_probs=83.0

Q ss_pred             HHHHHHhhhhhHhHHhHH-HHHHHHHHHHHHHHHHhHhHHHHHhhHHHHHHhHHHHhcccccccchHHHHHHHHHHHHHH
Q 008082          325 EQLERAKSESSQREADLE-TELKNVKAQIEELRANLLDKETELQSISEENEGLNLKIKTNESNQRDSKLAVELNKLEAEV  403 (578)
Q Consensus       325 e~l~~~k~E~~qr~~el~-~el~~~~~eleel~~~l~d~E~eL~~L~ee~~~L~~ei~e~~~~k~~~El~k~~kkle~e~  403 (578)
                      .++..++-|.++++.+.- ..........-+|...+.+....|..+.-+|..|..-+  ..-.+.+.+|...+-..+.++
T Consensus        59 ~qlr~~ree~eq~i~~~~~~~s~e~e~~~~~le~~l~e~~~~l~~~~~e~~~l~~~l--~~~~~~i~~l~~~~~~~e~~~  136 (769)
T PF05911_consen   59 RQLRQVREEQEQKIHEAVAKKSKEWEKIKSELEAKLAELSKRLAESAAENSALSKAL--QEKEKLIAELSEEKSQAEAEI  136 (769)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH--HHHHHHHHHHHHHHHHHHhHH
Confidence            445566777778777632 22222223333455666666667666666666665544  112244566666666677777


Q ss_pred             HHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 008082          404 VEFKASILDKETELMSLTEQNGMLKMEIENREMERNKVNDEAISLAEAARVAEREALMKVGFLTEEADKSSRRAARVTEQ  483 (578)
Q Consensus       404 ~eLk~~L~e~E~~lq~~~~E~~~lk~~i~~~~~e~~~~~~e~~~~le~a~~~~~~~~~kl~~l~~ele~~~~~~~~l~eq  483 (578)
                      ..|.+.|       +.+.+++..|+-++--+..++.-+.                         .+.+=..+.++-...|
T Consensus       137 ~~l~~~l-------~~~eken~~Lkye~~~~~keleir~-------------------------~E~~~~~~~ae~a~kq  184 (769)
T PF05911_consen  137 EDLMARL-------ESTEKENSSLKYELHVLSKELEIRN-------------------------EEREYSRRAAEAASKQ  184 (769)
T ss_pred             HHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH-------------------------HHHHHhHHHHHHHHHH
Confidence            7777766       8888888888887774433322211                         1111122223333444


Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q 008082          484 LDAAQAASTEMEAELRKLKV  503 (578)
Q Consensus       484 l~~ae~~~~~lEaEL~klr~  503 (578)
                      --..-.....||+|=+|||.
T Consensus       185 hle~vkkiakLEaEC~rLr~  204 (769)
T PF05911_consen  185 HLESVKKIAKLEAECQRLRA  204 (769)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            44445567789999999884

The function of this family is unknown.

>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]

Probab=94.64  E-value=13  Score=44.19  Aligned_cols=29  Identities=24%  Similarity=0.410  Sum_probs=15.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008082          282 DKLKGELDLARNELRQLRSALDASETRYQ  310 (578)
Q Consensus       282 ~eL~~el~~le~EieeL~s~LE~aE~~lq  310 (578)
                      -++.+.+.....++.+|+..|..+...+.
T Consensus       667 Le~~k~~~~~~~~~~~l~~~L~~~r~~i~  695 (1200)
T KOG0964|consen  667 LELLKNVNESRSELKELQESLDEVRNEIE  695 (1200)
T ss_pred             HHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445555555566666655555554443

>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]

Probab=94.49  E-value=4  Score=37.80  Aligned_cols=56  Identities=23%  Similarity=0.309  Sum_probs=24.0

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008082          200 RKSQMQLETANANLEMLRSDGIKATEAYNTLSLELELSKARVKSLEELVSKLQNDL  255 (578)
Q Consensus       200 ~el~~qLEea~~~le~l~~e~~~l~~~~~~l~~eLe~~~~e~~~Le~ei~kL~~el  255 (578)
                      ..+..+.+.+++.+..|..++..+...++.+..+|+.+..+...|...+.+.+..+
T Consensus        41 e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv   96 (140)
T PF10473_consen   41 ECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKV   96 (140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33334444444444444444444444444444444444444444444443333333

There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding

>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms

Probab=94.49  E-value=2.9  Score=44.87  Aligned_cols=108  Identities=17%  Similarity=0.277  Sum_probs=86.8

Q ss_pred             HhHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Q 008082          109 KAWQSELDAVQKQQSMDSAALGSAMNEIQRLKFQLEKVAESEAAQTKHAESAYAEMQNLRIELTETLSLVEKLKNELSYC  188 (578)
Q Consensus       109 ~~~~~ele~~r~~~~~~~~~L~~~~~el~klr~qle~~~~ak~~~~k~~~~le~el~eL~~el~e~~~eie~l~~~l~e~  188 (578)
                      ..|..-++.|+.-+..-...+.+....|.++..++..+.+.=...++   .++.++..+..+.......+..++.++..+
T Consensus       216 kDWR~hleqm~~~~~~I~~~~~~~~~~L~kl~~~i~~~lekI~sREk---~iN~qle~l~~eYr~~~~~ls~~~~~y~~~  292 (359)
T PF10498_consen  216 KDWRSHLEQMKQHKKSIESALPETKSQLDKLQQDISKTLEKIESREK---YINNQLEPLIQEYRSAQDELSEVQEKYKQA  292 (359)
T ss_pred             chHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45888888888888888888888888999998888877776666666   577788888888888888888888888888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008082          189 KESESQALEDVRKSQMQLETANANLEMLRSD  219 (578)
Q Consensus       189 e~~~s~l~~~~~el~~qLEea~~~le~l~~e  219 (578)
                      -..++.....+..+..+|+..+..++...+.
T Consensus       293 s~~V~~~t~~L~~IseeLe~vK~emeerg~~  323 (359)
T PF10498_consen  293 SEGVSERTRELAEISEELEQVKQEMEERGSS  323 (359)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            8888888888888888888888888764443

Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.

>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=94.37  E-value=6.9  Score=40.00  Aligned_cols=23  Identities=13%  Similarity=0.367  Sum_probs=8.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Q 008082          288 LDLARNELRQLRSALDASETRYQ  310 (578)
Q Consensus       288 l~~le~EieeL~s~LE~aE~~lq  310 (578)
                      +..++.++..++..|..++.+|.
T Consensus        75 i~~~~~eik~l~~eI~~~~~~I~   97 (265)
T COG3883          75 IDQSKAEIKKLQKEIAELKENIV   97 (265)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333333333344433

>PF14662 CCDC155: Coiled-coil region of CCDC155

Probab=94.18  E-value=5.9  Score=38.46  Aligned_cols=74  Identities=22%  Similarity=0.137  Sum_probs=35.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHH
Q 008082          133 MNEIQRLKFQLEKVAESEAAQTKHAESAYAEMQNLRIELTETLSLVEKLKNELSYCKESESQALEDVRKSQMQL  206 (578)
Q Consensus       133 ~~el~klr~qle~~~~ak~~~~k~~~~le~el~eL~~el~e~~~eie~l~~~l~e~e~~~s~l~~~~~el~~qL  206 (578)
                      -+|+..+|.-+-.+-.....-..+++.++.+-+.|-.++..+..+...+.....-+....-.+......++.++
T Consensus        66 ~eEledLk~~~~~lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql  139 (193)
T PF14662_consen   66 EEELEDLKTLAKSLEEENRSLLAQARQLEKEQQSLVAEIETLQEENGKLLAERDGLKKRSKELATEKATLQRQL  139 (193)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHHH
Confidence            44666666665555555555555555555555555544444444333333333333333333333333333333

>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family

Probab=93.92  E-value=11  Score=40.64  Aligned_cols=39  Identities=13%  Similarity=0.137  Sum_probs=16.3

Q ss_pred             HHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008082          175 LSLVEKLKNELSYCKESESQALEDVRKSQMQLETANANL  213 (578)
Q Consensus       175 ~~eie~l~~~l~e~e~~~s~l~~~~~el~~qLEea~~~l  213 (578)
                      ...+..+..++..+...+..++..+..+..++..++..+
T Consensus       143 ~~~~~~l~~~i~~~~~~i~~~~~~l~~~~~~l~~~~~~~  181 (423)
T TIGR01843       143 RAQLELILAQIKQLEAELAGLQAQLQALRQQLEVISEEL  181 (423)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333334444444444444444444444444444444333

Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.

>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]

Probab=93.88  E-value=12  Score=40.94  Aligned_cols=97  Identities=19%  Similarity=0.230  Sum_probs=51.6

Q ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccccccccccchhHHHHH
Q 008082          205 QLETANANLEMLRSDGIKATEAYNTLSLELELSKARVKSLEELVSKLQNDLLNSSNKLAESMGDVHLSQKNGENEEIDKL  284 (578)
Q Consensus       205 qLEea~~~le~l~~e~~~l~~~~~~l~~eLe~~~~e~~~Le~ei~kL~~el~~~~~k~~~~e~~~~~~~~~e~~eei~eL  284 (578)
                      ..-........+...-.++-..+..+..+++....++..|+..+..|..++..-+--.         .+..+-+.+..+|
T Consensus       310 D~nk~~~~~~~mk~K~~~~~g~l~kl~~eie~kEeei~~L~~~~d~L~~q~~kq~Is~---------e~fe~mn~Ere~L  380 (622)
T COG5185         310 DSNKYENYVNAMKQKSQEWPGKLEKLKSEIELKEEEIKALQSNIDELHKQLRKQGIST---------EQFELMNQEREKL  380 (622)
T ss_pred             hHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCCCH---------HHHHHHHHHHHHH
Confidence            3333333333444444444555555556666666666666666666666554432111         0111334567777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008082          285 KGELDLARNELRQLRSALDASETRYQ  310 (578)
Q Consensus       285 ~~el~~le~EieeL~s~LE~aE~~lq  310 (578)
                      .++++.+..+++.|...+-..+-..|
T Consensus       381 ~reL~~i~~~~~~L~k~V~~~~leaq  406 (622)
T COG5185         381 TRELDKINIQSDKLTKSVKSRKLEAQ  406 (622)
T ss_pred             HHHHHHhcchHHHHHHHHHhHHHHHH
Confidence            77777777777777655554443333

>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed

Probab=93.88  E-value=9.9  Score=39.98  Aligned_cols=82  Identities=24%  Similarity=0.409  Sum_probs=58.0

Q ss_pred             hHhHHhHHHHHHHHHHHHHHHHHHhHhHHHHHhhHHHHHHhHHHHhcccccccchHHHHHHHHHHHHHHHHHHHHhHhHH
Q 008082          335 SQREADLETELKNVKAQIEELRANLLDKETELQSISEENEGLNLKIKTNESNQRDSKLAVELNKLEAEVVEFKASILDKE  414 (578)
Q Consensus       335 ~qr~~el~~el~~~~~eleel~~~l~d~E~eL~~L~ee~~~L~~ei~e~~~~k~~~El~k~~kkle~e~~eLk~~L~e~E  414 (578)
                      .....++...+.-+..-+++++..+ ....+++      .+...++         ..+.+.+++|+.+...++...+...
T Consensus       208 ~~~E~~Lr~QL~~Y~~Kf~efq~tL-~kSNe~F------~tfk~Em---------ekm~Kk~kklEKE~~~~k~k~e~~n  271 (309)
T PF09728_consen  208 KETEKELREQLNLYSEKFEEFQDTL-NKSNEVF------ETFKKEM---------EKMSKKIKKLEKENQTWKSKWEKSN  271 (309)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-HHhHHHH------HHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3344445566666666666777666 5566666      6777777         7888888999999999999887777


Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 008082          415 TELMSLTEQNGMLKMEIE  432 (578)
Q Consensus       415 ~~lq~~~~E~~~lk~~i~  432 (578)
                      ..|-.+..+......++.
T Consensus       272 ~~l~~m~eer~~~~~~~~  289 (309)
T PF09728_consen  272 KALIEMAEERQKLEKELE  289 (309)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            777777666666655555

It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].

>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []

Probab=93.87  E-value=16  Score=42.51  Aligned_cols=45  Identities=24%  Similarity=0.248  Sum_probs=36.6

Q ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008082          458 EALMKVGFLTEEADKSSRRAARVTEQLDAAQAASTEMEAELRKLK  502 (578)
Q Consensus       458 ~~~~kl~~l~~ele~~~~~~~~l~eql~~ae~~~~~lEaEL~klr  502 (578)
                      .-+.++..|+.+|..+...+.+....|..|+-....+.-+|..|=
T Consensus       416 e~qeri~~LE~ELr~l~~~A~E~q~~LnsAQDELvtfSEeLAqLY  460 (717)
T PF09730_consen  416 EDQERISELEKELRALSKLAGESQGSLNSAQDELVTFSEELAQLY  460 (717)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345677888888888888888888888888888888888888775

Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus

>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.83  E-value=13  Score=41.30  Aligned_cols=142  Identities=20%  Similarity=0.272  Sum_probs=102.8

Q ss_pred             HHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008082          173 ETLSLVEKLKNELSYCKESESQALEDVRKSQMQLETANANLEMLRSDGIKATEAYNTLSLELELSKARVKSLEELVSKLQ  252 (578)
Q Consensus       173 e~~~eie~l~~~l~e~e~~~s~l~~~~~el~~qLEea~~~le~l~~e~~~l~~~~~~l~~eLe~~~~e~~~Le~ei~kL~  252 (578)
                      +...+|+..+....++.+.++.++....+...++-+.+.....|.+-+.+....+.++..-|+.-+.++..++..+.+..
T Consensus       328 E~~EeIe~~~ke~kdLkEkv~~lq~~l~eke~sl~dlkehassLas~glk~ds~Lk~leIalEqkkEec~kme~qLkkAh  407 (654)
T KOG4809|consen  328 ERLEEIESFRKENKDLKEKVNALQAELTEKESSLIDLKEHASSLASAGLKRDSKLKSLEIALEQKKEECSKMEAQLKKAH  407 (654)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45669999999999999999999999999999999999999999999999999999999999999998888888888888


Q ss_pred             HHHHhhhhhhhhccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhh
Q 008082          253 NDLLNSSNKLAESMGDVHLSQKNGENEEIDKLKGELDLARNELRQLRSALDASETRYQEEYIQSTLQIRSAYEQLERAKS  332 (578)
Q Consensus       253 ~el~~~~~k~~~~e~~~~~~~~~e~~eei~eL~~el~~le~EieeL~s~LE~aE~~lqeE~~~~~~el~~~~e~l~~~k~  332 (578)
                      .-..+.+-.-             +-.+.|..|+++....+.+.....+-...        .  ++     ..-++++.|.
T Consensus       408 ~~~ddar~~p-------------e~~d~i~~le~e~~~y~de~~kaqaevdr--------l--Le-----ilkeveneKn  459 (654)
T KOG4809|consen  408 NIEDDARMNP-------------EFADQIKQLEKEASYYRDECGKAQAEVDR--------L--LE-----ILKEVENEKN  459 (654)
T ss_pred             HhhHhhhcCh-------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHH--------H--HH-----HHHHHHhhhc
Confidence            7666554211             11233555555555555544444322221        0  11     1122566777


Q ss_pred             hhhHhHHhHH
Q 008082          333 ESSQREADLE  342 (578)
Q Consensus       333 E~~qr~~el~  342 (578)
                      +...+++++.
T Consensus       460 Dkdkkiaele  469 (654)
T KOG4809|consen  460 DKDKKIAELE  469 (654)
T ss_pred             cccchhhhcC
Confidence            7777777665

>smart00787 Spc7 Spc7 kinetochore protein

Probab=93.69  E-value=9.2  Score=40.25  Aligned_cols=52  Identities=19%  Similarity=0.305  Sum_probs=20.0

Q ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008082          205 QLETANANLEMLRSDGIKATEAYNTLSLELELSKARVKSLEELVSKLQNDLL  256 (578)
Q Consensus       205 qLEea~~~le~l~~e~~~l~~~~~~l~~eLe~~~~e~~~Le~ei~kL~~el~  256 (578)
                      .|..++..+.....++......+..+..++..+...+......+..+..+|.
T Consensus       205 eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~  256 (312)
T smart00787      205 ELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIA  256 (312)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333333333333333333333333333333333333333

This domain is found in cell division proteins which are required for kinetochore-spindle association.

>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]

Probab=93.69  E-value=11  Score=40.09  Aligned_cols=85  Identities=19%  Similarity=0.203  Sum_probs=44.4

Q ss_pred             HHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHH
Q 008082          111 WQSELDAVQKQQSMDSAALGSAMNEIQRLKFQLEKVAESEAAQTKHAESAYAEMQNLRIELTETLSLVEKLKNELSYCKE  190 (578)
Q Consensus       111 ~~~ele~~r~~~~~~~~~L~~~~~el~klr~qle~~~~ak~~~~k~~~~le~el~eL~~el~e~~~eie~l~~~l~e~e~  190 (578)
                      .+.++..+++.+......|.-...+-+++++.+-.+..-+.       .++++.+.|...-..+...++.|+.++-++..
T Consensus       121 v~~~~~~a~~n~~kAqQ~lar~t~Q~q~lqtrl~~l~~qr~-------ql~aq~qsl~a~~k~LQ~s~~Qlk~~~~~L~~  193 (499)
T COG4372         121 VRQELAAARQNLAKAQQELARLTKQAQDLQTRLKTLAEQRR-------QLEAQAQSLQASQKQLQASATQLKSQVLDLKL  193 (499)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44455566666666666666666666777776665544332       34444444444444444445555555555554


Q ss_pred             HHHHHHHHHHHH
Q 008082          191 SESQALEDVRKS  202 (578)
Q Consensus       191 ~~s~l~~~~~el  202 (578)
                      ...++...-..+
T Consensus       194 r~~~ieQ~~~~l  205 (499)
T COG4372         194 RSAQIEQEAQNL  205 (499)
T ss_pred             HHHHHHHHHHHH
Confidence            444433333333

>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site

Probab=93.30  E-value=18  Score=41.21  Aligned_cols=100  Identities=19%  Similarity=0.208  Sum_probs=50.6

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhhHhHhHhHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHH--
Q 008082           72 LSAMSARLEESQQQLLEITTSEDTRVEELRQLSQDRDKAWQSELDAVQKQQSMDSAALGSAMNEIQRLKFQLEKVAES--  149 (578)
Q Consensus        72 ~~el~~~Le~~~~~~~~~~e~ek~r~~El~kl~~~~e~~~~~ele~~r~~~~~~~~~L~~~~~el~klr~qle~~~~a--  149 (578)
                      ++.+...+....+......+.+.+--.++..++..- ..+...+-.-+-.|...+..|...+..+...=.+|+....+  
T Consensus       110 l~~~e~~i~~i~~~l~~L~~~e~~nr~~i~~l~~~y-~~lrk~ll~~~~~~G~a~~~Le~~L~~ie~~F~~f~~lt~~GD  188 (560)
T PF06160_consen  110 LDEIEEDIKEILDELDELLESEEKNREEIEELKEKY-RELRKELLAHSFSYGPAIEELEKQLENIEEEFSEFEELTENGD  188 (560)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhhhhchhHHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence            333333333333433444444443333333222221 22334444444457777777777777777777777755443  


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Q 008082          150 EAAQTKHAESAYAEMQNLRIELT  172 (578)
Q Consensus       150 k~~~~k~~~~le~el~eL~~el~  172 (578)
                      ...|......+...+..|...+.
T Consensus       189 ~~~A~eil~~l~~~~~~l~~~~e  211 (560)
T PF06160_consen  189 YLEAREILEKLKEETDELEEIME  211 (560)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            45555555555555555554444

EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane

>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]

Probab=93.11  E-value=25  Score=42.28  Aligned_cols=128  Identities=6%  Similarity=0.098  Sum_probs=75.6

Q ss_pred             HHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHH
Q 008082          111 WQSELDAVQKQQSMDSAALGSAMNEIQRLKFQLEKVAESEAAQTKHAESAYAEMQNLRIELTETLSLVEKLKNELSYCKE  190 (578)
Q Consensus       111 ~~~ele~~r~~~~~~~~~L~~~~~el~klr~qle~~~~ak~~~~k~~~~le~el~eL~~el~e~~~eie~l~~~l~e~e~  190 (578)
                      +..+.+.++.+...............+.+.+..-.....+..+++... +-.+...++  ..-.+-.+-.+...+..+..
T Consensus       158 lK~EYeelK~E~~kAE~~t~~~~~kkk~I~aEkk~aK~~k~eaeky~~-lkde~~~~q--~e~~L~qLfhvE~~i~k~~~  234 (1141)
T KOG0018|consen  158 LKPEYEELKYEMAKAEETTTGNYKKKKSIAAEKKEAKEGKEEAEKYQR-LKDEKGKAQ--KEQFLWELFHVEACIEKAND  234 (1141)
T ss_pred             hhHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHhhHHHHHHHHH-HHHHHHHHH--HHHHHHHHhhhhhhHhhhhH
Confidence            666777777777666665555555555555555444444455544211 111111111  11234466677777777888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 008082          191 SESQALEDVRKSQMQLETANANLEMLRSDGIKATEAYNTLSLELELSKARV  241 (578)
Q Consensus       191 ~~s~l~~~~~el~~qLEea~~~le~l~~e~~~l~~~~~~l~~eLe~~~~e~  241 (578)
                      .++.++..+..+...++.....+.....+..++...+..+...+......+
T Consensus       235 els~~~~ei~~~~~~~d~~e~ei~~~k~e~~ki~re~~~~Dk~i~~ke~~l  285 (1141)
T KOG0018|consen  235 ELSRLNAEIPKLKERMDKKEREIRVRKKERGKIRRELQKVDKKISEKEEKL  285 (1141)
T ss_pred             HHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            888888888888888888877777766666666555555554444444433

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=93.04  E-value=14  Score=39.11  Aligned_cols=49  Identities=16%  Similarity=0.036  Sum_probs=26.3

Q ss_pred             HHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008082          172 TETLSLVEKLKNELSYCKESESQALEDVRKSQMQLETANANLEMLRSDG  220 (578)
Q Consensus       172 ~e~~~eie~l~~~l~e~e~~~s~l~~~~~el~~qLEea~~~le~l~~e~  220 (578)
                      ..+...++.|+.....+......+...+..+......+..++..++...
T Consensus       152 ~~L~~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~  200 (325)
T PF08317_consen  152 EGLEENLELLQEDYAKLDKQLEQLDELLPKLRERKAELEEELENLKQLV  200 (325)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444455555555555555555555555555555555555555444443

>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD

Probab=93.02  E-value=22  Score=41.32  Aligned_cols=52  Identities=19%  Similarity=0.316  Sum_probs=23.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008082           33 LESQLAQLQEDLKKAKEQLNASDSWKRRAQQEAEEAKKQLSAMSARLEESQQ   84 (578)
Q Consensus        33 Le~ql~~lqeeL~~eke~~~~~E~~k~~~~~ELe~~k~~~~el~~~Le~~~~   84 (578)
                      +..++..++.++................+..+++.+...++++...+...++
T Consensus       207 ~~~~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~~~~~~GG  258 (650)
T TIGR03185       207 ILSEIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEKKFRSEGG  258 (650)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            3334444444444444444444444444444444444444555555554444

This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.

>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]

Probab=92.62  E-value=23  Score=40.57  Aligned_cols=38  Identities=18%  Similarity=0.223  Sum_probs=18.4

Q ss_pred             HHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008082          177 LVEKLKNELSYCKESESQALEDVRKSQMQLETANANLE  214 (578)
Q Consensus       177 eie~l~~~l~e~e~~~s~l~~~~~el~~qLEea~~~le  214 (578)
                      -|-.|+.+..+.+.-+.+.-..|..++..+..++.-+.
T Consensus       475 iIkKLRAk~ke~etl~~K~ge~i~~L~sE~~~lk~il~  512 (961)
T KOG4673|consen  475 IIKKLRAKIKEAETLEEKKGELITKLQSEENKLKSILR  512 (961)
T ss_pred             HHHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHhh
Confidence            44445555555554444444455555544444444443

>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch

Probab=92.43  E-value=9.2  Score=35.57  Aligned_cols=38  Identities=26%  Similarity=0.323  Sum_probs=17.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 008082          225 EAYNTLSLELELSKARVKSLEELVSKLQNDLLNSSNKL  262 (578)
Q Consensus       225 ~~~~~l~~eLe~~~~e~~~Le~ei~kL~~el~~~~~k~  262 (578)
                      .....+...+......++...+++.++...+...+..+
T Consensus        94 ~~~~~l~~~~~~~~~~~k~~kee~~klk~~~~~~~tq~  131 (151)
T PF11559_consen   94 EKERQLQKQLKSLEAKLKQEKEELQKLKNQLQQRKTQY  131 (151)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333344444444445555555555555554443

pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.

>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure

Probab=92.40  E-value=23  Score=39.97  Aligned_cols=34  Identities=24%  Similarity=0.492  Sum_probs=23.8

Q ss_pred             HHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHH
Q 008082          401 AEVVEFKASILDKETELMSLTEQNGMLKMEIENR  434 (578)
Q Consensus       401 ~e~~eLk~~L~e~E~~lq~~~~E~~~lk~~i~~~  434 (578)
                      .-+..|-..|..+.+.|+.+.-+...|.-+++++
T Consensus       392 ~rl~~lt~~Li~KQ~~lE~l~~ek~al~lqlErl  425 (511)
T PF09787_consen  392 SRLTQLTESLIQKQTQLESLGSEKNALRLQLERL  425 (511)
T ss_pred             HHHhhccHHHHHHHHHHHHHHhhhhhccccHHHH
Confidence            5556666677777777788877777777777633

They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].

>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []

Probab=92.33  E-value=27  Score=40.77  Aligned_cols=56  Identities=11%  Similarity=0.162  Sum_probs=35.3

Q ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 008082          205 QLETANANLEMLRSDGIKATEAYNTLSLELELSKARVKSLEELVSKLQNDLLNSSN  260 (578)
Q Consensus       205 qLEea~~~le~l~~e~~~l~~~~~~l~~eLe~~~~e~~~Le~ei~kL~~el~~~~~  260 (578)
                      ++..++..+.....+...|...+......|+.....+....+.|..|...+..+..
T Consensus       266 EiqKL~qQL~qve~EK~~L~~~L~e~Q~qLe~a~~als~q~eki~~L~e~l~aL~~  321 (717)
T PF09730_consen  266 EIQKLKQQLLQVEREKSSLLSNLQESQKQLEHAQGALSEQQEKINRLTEQLDALRK  321 (717)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            45555555655666666666666666666766666666666666666666555543

Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus

>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins

Probab=92.11  E-value=27  Score=40.22  Aligned_cols=53  Identities=23%  Similarity=0.260  Sum_probs=33.5

Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008082          450 EAARVAEREALMKVGFLTEEADKSSRRAARVTEQLDAAQAASTEMEAELRKLK  502 (578)
Q Consensus       450 e~a~~~~~~~~~kl~~l~~ele~~~~~~~~l~eql~~ae~~~~~lEaEL~klr  502 (578)
                      +....-...+......++..+.........+..||.++...-.....+...+|
T Consensus       510 EqgeaE~~~Lse~aqqLE~~Lq~~qe~la~l~~QL~~Ar~~lqes~eea~~lR  562 (739)
T PF07111_consen  510 EQGEAERQQLSEVAQQLEQELQEKQESLAELEEQLEAARKSLQESTEEAAELR  562 (739)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            33444444555566677777777777777777777777776665555554454

The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm

>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT)

Probab=91.64  E-value=10  Score=34.53  Aligned_cols=23  Identities=22%  Similarity=0.318  Sum_probs=12.4

Q ss_pred             hHhhHHHHHHHHHHHHHHHHHHH
Q 008082          122 QSMDSAALGSAMNEIQRLKFQLE  144 (578)
Q Consensus       122 ~~~~~~~L~~~~~el~klr~qle  144 (578)
                      |+.++..|.....++..++.++.
T Consensus        54 Ha~~~~~L~~lr~e~~~~~~~~~   76 (132)
T PF07926_consen   54 HAEDIKELQQLREELQELQQEIN   76 (132)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHH
Confidence            55555555555555555554443

These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore

>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []

Probab=91.48  E-value=16  Score=37.16  Aligned_cols=52  Identities=31%  Similarity=0.423  Sum_probs=27.3

Q ss_pred             HHHhhhhhHhHHhHHHHHHHHHHHHHHHHHHhHhHHHHHhhHHHHHHhHHHH
Q 008082          328 ERAKSESSQREADLETELKNVKAQIEELRANLLDKETELQSISEENEGLNLK  379 (578)
Q Consensus       328 ~~~k~E~~qr~~el~~el~~~~~eleel~~~l~d~E~eL~~L~ee~~~L~~e  379 (578)
                      ++.+.++..++..++.+......++..........+.+++.+..+...|...
T Consensus         4 Er~k~Ele~rL~q~eee~~~a~~~L~e~e~~a~~Leek~k~aeeea~~Le~k   55 (246)
T PF00769_consen    4 EREKQELEERLRQMEEEMRRAQEALEESEETAEELEEKLKQAEEEAEELEQK   55 (246)
T ss_dssp             HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445555556555555555655555555555555555554444444444443

Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.

>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules

Probab=91.31  E-value=16  Score=36.09  Aligned_cols=20  Identities=15%  Similarity=0.243  Sum_probs=7.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q 008082          290 LARNELRQLRSALDASETRY  309 (578)
Q Consensus       290 ~le~EieeL~s~LE~aE~~l  309 (578)
                      .++..-+.|+..+.+...++
T Consensus       108 ~~k~NEE~Lkk~~~ey~~~l  127 (207)
T PF05010_consen  108 GYKKNEETLKKCIEEYEERL  127 (207)
T ss_pred             HHHHhHHHHHHHHHHHHHHH
Confidence            33333333334444333333

The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].

>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms

Probab=91.02  E-value=22  Score=38.24  Aligned_cols=82  Identities=15%  Similarity=0.243  Sum_probs=43.4

Q ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccccccccccchhHHHHH
Q 008082          205 QLETANANLEMLRSDGIKATEAYNTLSLELELSKARVKSLEELVSKLQNDLLNSSNKLAESMGDVHLSQKNGENEEIDKL  284 (578)
Q Consensus       205 qLEea~~~le~l~~e~~~l~~~~~~l~~eLe~~~~e~~~Le~ei~kL~~el~~~~~k~~~~e~~~~~~~~~e~~eei~eL  284 (578)
                      +++.+-.........+..++..|.....-+.....++..+.+++..++.++.+-+...            .+. .-+..+
T Consensus       267 qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK~emeerg~~m------------tD~-sPlv~I  333 (359)
T PF10498_consen  267 QLEPLIQEYRSAQDELSEVQEKYKQASEGVSERTRELAEISEELEQVKQEMEERGSSM------------TDG-SPLVKI  333 (359)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC------------CCC-CHHHHH
Confidence            3344444444444444444455555544444444445555555555555555543221            111 337778


Q ss_pred             HHHHHHHHHHHHHHH
Q 008082          285 KGELDLARNELRQLR  299 (578)
Q Consensus       285 ~~el~~le~EieeL~  299 (578)
                      +..+..++.||..+.
T Consensus       334 KqAl~kLk~EI~qMd  348 (359)
T PF10498_consen  334 KQALTKLKQEIKQMD  348 (359)
T ss_pred             HHHHHHHHHHHHHhh
Confidence            888888888887774

Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.

>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=90.97  E-value=8.7  Score=38.62  Aligned_cols=72  Identities=18%  Similarity=0.259  Sum_probs=42.5

Q ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccccccccccchhHHHHHHHHHHH
Q 008082          211 ANLEMLRSDGIKATEAYNTLSLELELSKARVKSLEELVSKLQNDLLNSSNKLAESMGDVHLSQKNGENEEIDKLKGELDL  290 (578)
Q Consensus       211 ~~le~l~~e~~~l~~~~~~l~~eLe~~~~e~~~Le~ei~kL~~el~~~~~k~~~~e~~~~~~~~~e~~eei~eL~~el~~  290 (578)
                      .-|..+.++...|..++....++|-.+..++..|+..|..+..+......                   .+..+..++..
T Consensus        32 ~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~-------------------~i~r~~eey~~   92 (230)
T PF10146_consen   32 KCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQE-------------------KIQRLYEEYKP   92 (230)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHH
Confidence            33445555555555666666666666666666666666666665544422                   25555556666


Q ss_pred             HHHHHHHHHHH
Q 008082          291 ARNELRQLRSA  301 (578)
Q Consensus       291 le~EieeL~s~  301 (578)
                      ++.+|++++..
T Consensus        93 Lk~~in~~R~e  103 (230)
T PF10146_consen   93 LKDEINELRKE  103 (230)
T ss_pred             HHHHHHHHHHH
Confidence            66666666544

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.

>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT)

Probab=90.82  E-value=13  Score=33.98  Aligned_cols=23  Identities=30%  Similarity=0.413  Sum_probs=8.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Q 008082          233 ELELSKARVKSLEELVSKLQNDL  255 (578)
Q Consensus       233 eLe~~~~e~~~Le~ei~kL~~el  255 (578)
                      ++..+...+..|..+-.=|..+|
T Consensus       106 e~~~~~~r~~dL~~QN~lLh~Ql  128 (132)
T PF07926_consen  106 ELSELEQRIEDLNEQNKLLHDQL  128 (132)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333333333333333

These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore

>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]

Probab=90.76  E-value=39  Score=39.48  Aligned_cols=23  Identities=4%  Similarity=-0.031  Sum_probs=12.8

Q ss_pred             HHHHHHHHHHhhhhhhHHHHHHH
Q 008082           80 EESQQQLLEITTSEDTRVEELRQ  102 (578)
Q Consensus        80 e~~~~~~~~~~e~ek~r~~El~k  102 (578)
                      +.++-.-.-+.+..+++..+...
T Consensus        66 dkaglneSviie~sk~vstqetr   88 (1265)
T KOG0976|consen   66 DKAGLNESVIIEQSKKVSTQETR   88 (1265)
T ss_pred             HHhhccchhhhhhcchhhHHHHH
Confidence            33444445556666777666543

>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []

Probab=90.70  E-value=21  Score=36.42  Aligned_cols=95  Identities=20%  Similarity=0.204  Sum_probs=67.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh------------------
Q 008082          159 SAYAEMQNLRIELTETLSLVEKLKNELSYCKESESQALEDVRKSQMQLETANANLEMLRSDG------------------  220 (578)
Q Consensus       159 ~le~el~eL~~el~e~~~eie~l~~~l~e~e~~~s~l~~~~~el~~qLEea~~~le~l~~e~------------------  220 (578)
                      .++-...-+..++.-....|.-+-.+++.++..+..+...+..+..+|+.++.....-...+                  
T Consensus        78 ~lek~rqKlshdlq~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~KsELErsQ~~~~~~~~sl~~~stpqk~f~~p~tp~q  157 (307)
T PF10481_consen   78 NLEKTRQKLSHDLQVKESQVNFLEGQLNSCKKQIEKLEQELKRCKSELERSQQAASSGDVSLNPCSTPQKSFATPLTPSQ  157 (307)
T ss_pred             HHHHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccccCCchhhccCCCChhh
Confidence            34444444555566666778888888999999999999999999999998888776333221                  


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008082          221 IKATEAYNTLSLELELSKARVKSLEELVSKLQN  253 (578)
Q Consensus       221 ~~l~~~~~~l~~eLe~~~~e~~~Le~ei~kL~~  253 (578)
                      ...-..|++|.+.+..--.+.+.|+.+|..|+.
T Consensus       158 ~~~~sk~e~L~ekynkeveerkrle~e~k~lq~  190 (307)
T PF10481_consen  158 YYSDSKYEELQEKYNKEVEERKRLEAEVKALQA  190 (307)
T ss_pred             hhhhhhHHHHHHHHHHHHHHHhhHHHHHHHHhc
Confidence            223466777777777766777888888888874

Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].

>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]

Probab=90.66  E-value=39  Score=39.28  Aligned_cols=58  Identities=17%  Similarity=0.194  Sum_probs=30.3

Q ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 008082          457 REALMKVGFLTEEADKSSRRAARVTEQLDAAQAASTEMEAELRKLKVQSDQWRKAAEA  514 (578)
Q Consensus       457 ~~~~~kl~~l~~ele~~~~~~~~l~eql~~ae~~~~~lEaEL~klr~q~eq~RkaaE~  514 (578)
                      .++...+.+++..++.......++..++.........+---..++..+.+..++.++.
T Consensus       562 ~e~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k~~rleEE~e~L~~kle~  619 (698)
T KOG0978|consen  562 QEAKQSLEDLQIELEKSEAKLEQIQEQYAELELELEIEKFKRKRLEEELERLKRKLER  619 (698)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444555566666666666665555555555554444444444444444444444443

>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []

Probab=90.31  E-value=12  Score=33.70  Aligned_cols=95  Identities=20%  Similarity=0.317  Sum_probs=67.8

Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhhHhH
Q 008082           28 SRVSELESQLAQLQEDLKKAKEQLNASDSWKRRAQQEAEEAKKQLSAMSARLEESQQQLLEITTSEDTRVEELRQLSQDR  107 (578)
Q Consensus        28 ~~~~eLe~ql~~lqeeL~~eke~~~~~E~~k~~~~~ELe~~k~~~~el~~~Le~~~~~~~~~~e~ek~r~~El~kl~~~~  107 (578)
                      .-+..|.++|..+.-++...++.+..++.+|..+.+||-.+-...+++       ..           ...++       
T Consensus        16 ~~ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~-------~~-----------~~~~~-------   70 (120)
T PF12325_consen   16 QLVERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEEL-------RA-----------LKKEV-------   70 (120)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HH-----------HHHHH-------
Confidence            346678999999999999999999999999999998886643333322       11           01111       


Q ss_pred             hHhHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 008082          108 DKAWQSELDAVQKQQSMDSAALGSAMNEIQRLKFQLEKVAE  148 (578)
Q Consensus       108 e~~~~~ele~~r~~~~~~~~~L~~~~~el~klr~qle~~~~  148 (578)
                       ..++.++..+..+|.....-|..-.+++..|+.++.++..
T Consensus        71 -~~L~~el~~l~~ry~t~LellGEK~E~veEL~~Dv~DlK~  110 (120)
T PF12325_consen   71 -EELEQELEELQQRYQTLLELLGEKSEEVEELRADVQDLKE  110 (120)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence             2245566677777888888888888888888888876544

The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].

>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []

Probab=90.04  E-value=13  Score=33.60  Aligned_cols=21  Identities=24%  Similarity=0.158  Sum_probs=8.3

Q ss_pred             HHHhhhHHHHHHHHHHHHHHH
Q 008082          215 MLRSDGIKATEAYNTLSLELE  235 (578)
Q Consensus       215 ~l~~e~~~l~~~~~~l~~eLe  235 (578)
                      .|..++..+...|+.+-.-|-
T Consensus        72 ~L~~el~~l~~ry~t~LellG   92 (120)
T PF12325_consen   72 ELEQELEELQQRYQTLLELLG   92 (120)
T ss_pred             HHHHHHHHHHHHHHHHHHHhc
Confidence            333334444444444433333

The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].

>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]

Probab=89.96  E-value=20  Score=34.91  Aligned_cols=59  Identities=12%  Similarity=0.186  Sum_probs=29.5

Q ss_pred             HHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008082          114 ELDAVQKQQSMDSAALGSAMNEIQRLKFQLEKVAESEAAQTKHAESAYAEMQNLRIELT  172 (578)
Q Consensus       114 ele~~r~~~~~~~~~L~~~~~el~klr~qle~~~~ak~~~~k~~~~le~el~eL~~el~  172 (578)
                      ++++++++...--.+|..+-+-+.-+.++|+.+-.+.......++.++.....+..++.
T Consensus         5 ~va~lnrri~~leeele~aqErl~~a~~KL~Eaeq~~dE~er~~Kv~enr~~kdEE~~e   63 (205)
T KOG1003|consen    5 DVAALNRRIQLLEEELDRAQERLATALQKLEEAEQAADESERGMKVIENRAQKLEEKME   63 (205)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhHHHHH
Confidence            33444444433334455555555556666666555555555555555544444433333

>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=89.90  E-value=25  Score=35.99  Aligned_cols=20  Identities=15%  Similarity=0.071  Sum_probs=8.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHh
Q 008082          391 KLAVELNKLEAEVVEFKASI  410 (578)
Q Consensus       391 El~k~~kkle~e~~eLk~~L  410 (578)
                      .+......+..+...|..+.
T Consensus       201 ~~aa~~a~~~~e~a~l~~qk  220 (265)
T COG3883         201 ALAAKEASALGEKAALEEQK  220 (265)
T ss_pred             HHHHHHHHhHHHHHHHHHHH
Confidence            33333344445555555433

>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues

Probab=89.81  E-value=28  Score=36.40  Aligned_cols=28  Identities=32%  Similarity=0.391  Sum_probs=12.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008082          159 SAYAEMQNLRIELTETLSLVEKLKNELS  186 (578)
Q Consensus       159 ~le~el~eL~~el~e~~~eie~l~~~l~  186 (578)
                      .+..+...+-..+......|..|+..+.
T Consensus        94 ~L~~~~~~le~~L~~~~e~v~qLrHeL~  121 (306)
T PF04849_consen   94 DLSERNEALEEQLGAALEQVEQLRHELS  121 (306)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333444444444444444444444443

HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].

>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch

Probab=89.78  E-value=17  Score=33.79  Aligned_cols=105  Identities=20%  Similarity=0.254  Sum_probs=63.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 008082          148 ESEAAQTKHAESAYAEMQNLRIELTETLSLVEKLKNELSYCKESESQALEDVRKSQMQLETANANLEMLRSDGIKATEAY  227 (578)
Q Consensus       148 ~ak~~~~k~~~~le~el~eL~~el~e~~~eie~l~~~l~e~e~~~s~l~~~~~el~~qLEea~~~le~l~~e~~~l~~~~  227 (578)
                      ..+.....+.+.+...+..+..++..+...++.|+.++..++..++.+......+..++..+...+.....++.++...+
T Consensus        45 ~~~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~~~  124 (151)
T PF11559_consen   45 QQRDRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLKNQL  124 (151)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344444455666666667777777777777777777777777777777777777777766666666666666665555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008082          228 NTLSLELELSKARVKSLEELVSKLQNDL  255 (578)
Q Consensus       228 ~~l~~eLe~~~~e~~~Le~ei~kL~~el  255 (578)
                      ......+   ..+++.-+.++.+|+..+
T Consensus       125 ~~~~tq~---~~e~rkke~E~~kLk~rL  149 (151)
T PF11559_consen  125 QQRKTQY---EHELRKKEREIEKLKERL  149 (151)
T ss_pred             HHHHHHH---HHHHHHHHHHHHHHHHHh
Confidence            5544433   233344444555555443

pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.

>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []

Probab=89.54  E-value=18  Score=36.99  Aligned_cols=75  Identities=12%  Similarity=0.101  Sum_probs=43.6

Q ss_pred             HHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008082          176 SLVEKLKNELSYCKESESQALEDVRKSQMQLETANANLEMLRSDGIKATEAYNTLSLELELSKARVKSLEELVSK  250 (578)
Q Consensus       176 ~eie~l~~~l~e~e~~~s~l~~~~~el~~qLEea~~~le~l~~e~~~l~~~~~~l~~eLe~~~~e~~~Le~ei~k  250 (578)
                      .-|..|-.++.-+.+..-+-+..++.+.+-|...+...+.-..++..|..+...+.+.++.+......|..++.-
T Consensus        18 qKIqelE~QldkLkKE~qQrQfQleSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~c~~lek~rqKlshdlq~   92 (307)
T PF10481_consen   18 QKIQELEQQLDKLKKERQQRQFQLESLEAALQKQKQKVEEEKNEYSALKRENQSLMESCENLEKTRQKLSHDLQV   92 (307)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHhhHHHhh
Confidence            344444444444555555555666666666666666666666667777777666666666655544444444333

Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].

>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]

Probab=89.40  E-value=44  Score=38.03  Aligned_cols=207  Identities=21%  Similarity=0.254  Sum_probs=117.3

Q ss_pred             HHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008082          176 SLVEKLKNELSYCKESESQALEDVRKSQMQLETANANLEMLRSDGIKATEAYNTLSLELELSKARVKSLEELVSKLQNDL  255 (578)
Q Consensus       176 ~eie~l~~~l~e~e~~~s~l~~~~~el~~qLEea~~~le~l~~e~~~l~~~~~~l~~eLe~~~~e~~~Le~ei~kL~~el  255 (578)
                      .+-.++..+++.+++.++.++..+..++.++..+....+.   +..-....+.-+..+|+..+..+..|+.++..|..++
T Consensus       189 ~~~~~~~~q~~~le~ki~~lq~a~~~t~~el~~~~s~~de---e~~~k~aev~lim~eLe~aq~ri~~lE~e~e~L~~ql  265 (629)
T KOG0963|consen  189 DEEQNLQEQLEELEKKISSLQSAIEDTQNELFDLKSKYDE---EVAAKAAEVSLIMTELEDAQQRIVFLEREVEQLREQL  265 (629)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhh---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455566677777777777666666666666666655321   1233335566667778888888888888888888877


Q ss_pred             HhhhhhhhhccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhh
Q 008082          256 LNSSNKLAESMGDVHLSQKNGENEEIDKLKGELDLARNELRQLRSALDASETRYQEEYIQSTLQIRSAYEQLERAKSESS  335 (578)
Q Consensus       256 ~~~~~k~~~~e~~~~~~~~~e~~eei~eL~~el~~le~EieeL~s~LE~aE~~lqeE~~~~~~el~~~~e~l~~~k~E~~  335 (578)
                      .........           .....++.+.-.+...+.++..|-..++..++-+.++......+|.              
T Consensus       266 ~~~N~~~~~-----------~~~~~i~~~~~~L~~kd~~i~~L~~di~~~~~S~~~e~e~~~~qI~--------------  320 (629)
T KOG0963|consen  266 AKANSSKKL-----------AKIDDIDALGSVLNQKDSEIAQLSNDIERLEASLVEEREKHKAQIS--------------  320 (629)
T ss_pred             Hhhhhhhhh-----------ccCCchHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------
Confidence            655432210           1223466777777778888888888888878777766655544433              


Q ss_pred             HhHHhHHHHHHHHHHHHHHHHHHhHhHHHHHhhHHHHHHhHHH-Hhccc-c-------cccchHHHHHHHHHHHHHHHHH
Q 008082          336 QREADLETELKNVKAQIEELRANLLDKETELQSISEENEGLNL-KIKTN-E-------SNQRDSKLAVELNKLEAEVVEF  406 (578)
Q Consensus       336 qr~~el~~el~~~~~eleel~~~l~d~E~eL~~L~ee~~~L~~-ei~e~-~-------~~k~~~El~k~~kkle~e~~eL  406 (578)
                          .++.++..+..++++++..+... ..+-.|+.+..-|+. +..+. +       ++.-..=|....++|+.+++.|
T Consensus       321 ----~le~~l~~~~~~leel~~kL~~~-sDYeeIK~ELsiLk~ief~~se~a~~~~~~~~~leslLl~knr~lq~e~a~L  395 (629)
T KOG0963|consen  321 ----ALEKELKAKISELEELKEKLNSR-SDYEEIKKELSILKAIEFGDSEEANDEDETAKTLESLLLEKNRKLQNENASL  395 (629)
T ss_pred             ----HHHHHHHHHHHHHHHHHHHHhhh-ccHHHHHHHHHHHHHhhcCCcccccccccccchHHHHHHHHHhhhhHHHHHH
Confidence                23344445555555555555322 222233333333322 11110 1       1111223455556677777777


Q ss_pred             HHHhHhHHH
Q 008082          407 KASILDKET  415 (578)
Q Consensus       407 k~~L~e~E~  415 (578)
                      +........
T Consensus       396 r~~n~~~~~  404 (629)
T KOG0963|consen  396 RVANSGLSG  404 (629)
T ss_pred             hccccccch
Confidence            766644333

>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]

Probab=89.28  E-value=47  Score=38.26  Aligned_cols=20  Identities=15%  Similarity=0.245  Sum_probs=10.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q 008082          128 ALGSAMNEIQRLKFQLEKVA  147 (578)
Q Consensus       128 ~L~~~~~el~klr~qle~~~  147 (578)
                      ++...+.++..++.+++...
T Consensus       148 e~~~k~ae~~~lr~k~dss~  167 (716)
T KOG4593|consen  148 EKEDKLAELGTLRNKLDSSL  167 (716)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            34444555555555555433

>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells

Probab=89.10  E-value=28  Score=35.47  Aligned_cols=22  Identities=14%  Similarity=0.154  Sum_probs=11.9

Q ss_pred             HHHHHHHHHHHHHhhhhhHhHH
Q 008082          318 LQIRSAYEQLERAKSESSQREA  339 (578)
Q Consensus       318 ~el~~~~e~l~~~k~E~~qr~~  339 (578)
                      .++..++..+++++..+.....
T Consensus       153 ~El~~A~~LL~~v~~~~~~~~~  174 (264)
T PF06008_consen  153 DELKEAEDLLSRVQKWFQKPQQ  174 (264)
T ss_pred             HHHHHHHHHHHHHHHHHhhHHH
Confidence            5555556666666665443333

Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex

>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]

Probab=88.97  E-value=31  Score=37.70  Aligned_cols=71  Identities=17%  Similarity=0.127  Sum_probs=35.1

Q ss_pred             hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008082          186 SYCKESESQALEDVRKSQMQLETANANLEMLRSDGIKATEAYNTLSLELELSKARVKSLEELVSKLQNDLLNSS  259 (578)
Q Consensus       186 ~e~e~~~s~l~~~~~el~~qLEea~~~le~l~~e~~~l~~~~~~l~~eLe~~~~e~~~Le~ei~kL~~el~~~~  259 (578)
                      ...+....+++..+..++.++...+..-..|.+...-+...+..+...+   +..+......|..|+.++.++-
T Consensus       378 k~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~knq~vw~~kl~~~~e~~---~~~~~s~d~~I~dLqEQlrDlm  448 (493)
T KOG0804|consen  378 KIVERKLQQLQTKLKKCQKELKEEREENKKLIKNQDVWRGKLKELEERE---KEALGSKDEKITDLQEQLRDLM  448 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhHh
Confidence            3344444455555555555555555444444444444444444333322   2334466666666666665553

>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD

Probab=88.70  E-value=53  Score=38.11  Aligned_cols=50  Identities=18%  Similarity=0.257  Sum_probs=23.8

Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 008082           28 SRVSELESQLAQLQEDLKKAKEQLNASDSWKRRAQQEAEEAKKQLSAMSA   77 (578)
Q Consensus        28 ~~~~eLe~ql~~lqeeL~~eke~~~~~E~~k~~~~~ELe~~k~~~~el~~   77 (578)
                      .++.+++.++..++.++......+........++...+..+...+.....
T Consensus       209 ~~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~~~~~~GG  258 (650)
T TIGR03185       209 SEIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEKKFRSEGG  258 (650)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            34444555555555555444444444444444444444444444443333

This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.

>KOG1937 consensus Uncharacterized conserved protein [Function unknown]

Probab=88.51  E-value=42  Score=36.70  Aligned_cols=39  Identities=28%  Similarity=0.300  Sum_probs=19.5

Q ss_pred             HHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008082          114 ELDAVQKQQSMDSAALGSAMNEIQRLKFQLEKVAESEAA  152 (578)
Q Consensus       114 ele~~r~~~~~~~~~L~~~~~el~klr~qle~~~~ak~~  152 (578)
                      ++.+..++|...+.+|.+-..+....-+.++.+...+..
T Consensus       245 el~ae~kqh~v~~~ales~~sq~~e~~selE~llklker  283 (521)
T KOG1937|consen  245 ELQAEYKQHLVEYKALESKRSQFEEQNSELEKLLKLKER  283 (521)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhHHH
Confidence            444455555555555555555444444444444444433

>TIGR01005 eps_transp_fam exopolysaccharide transport protein family

Probab=88.41  E-value=60  Score=38.33  Aligned_cols=114  Identities=12%  Similarity=0.180  Sum_probs=62.3

Q ss_pred             HHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008082          177 LVEKLKNELSYCKESESQALEDVRKSQMQLETANANLEMLRSDGIK-ATEAYNTLSLELELSKARVKSLEELVSKLQNDL  255 (578)
Q Consensus       177 eie~l~~~l~e~e~~~s~l~~~~~el~~qLEea~~~le~l~~e~~~-l~~~~~~l~~eLe~~~~e~~~Le~ei~kL~~el  255 (578)
                      .+.+++.++..++...+.+...+..-.-++-.++..+..++..+.. +..-..++..+++........|+..+..++..+
T Consensus       289 ~i~~L~~~l~~l~~~~~~l~~~y~~~hP~v~~l~~qi~~l~~~i~~e~~~~~~~~~~~~~~a~~~~~~L~~~l~~~~~~~  368 (754)
T TIGR01005       289 LIQRLRERQAELRATIADLSTTMLANHPRVVAAKSSLADLDAQIRSELQKITKSLLMQADAAQARESQLVSDVNQLKAAS  368 (754)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4555666666666665555554433333333344444433333222 222233445556666666667777777777666


Q ss_pred             HhhhhhhhhccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008082          256 LNSSNKLAESMGDVHLSQKNGENEEIDKLKGELDLARNELRQLRSALDASE  306 (578)
Q Consensus       256 ~~~~~k~~~~e~~~~~~~~~e~~eei~eL~~el~~le~EieeL~s~LE~aE  306 (578)
                      ...-..                ..++..|+++.+..+.-.+.+-.+++++.
T Consensus       369 ~~~~~~----------------~~e~~~L~Re~~~~~~~Y~~ll~r~~e~~  403 (754)
T TIGR01005       369 AQAGEQ----------------QVDLDALQRDAAAKRQLYESYLTNYRQAA  403 (754)
T ss_pred             HhCcHh----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            555322                13477777777777777777766666544

The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.

>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function

Probab=88.01  E-value=39  Score=35.67  Aligned_cols=178  Identities=19%  Similarity=0.158  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHH
Q 008082          126 SAALGSAMNEIQRLKFQLEKVAESEAAQTKHAESAY---------------------AEMQNLRIELTETLSLVEKLKNE  184 (578)
Q Consensus       126 ~~~L~~~~~el~klr~qle~~~~ak~~~~k~~~~le---------------------~el~eL~~el~e~~~eie~l~~~  184 (578)
                      ..+|..-..|-..+|.-.+.+..-+..-.+....+.                     .-+.+.+.....+..+|..|+..
T Consensus        15 ~~eLe~cq~ErDqyKlMAEqLqer~q~LKkk~~el~~~~~~~~d~~~~~~~~~~~La~lL~~sre~Nk~L~~Ev~~Lrqk   94 (319)
T PF09789_consen   15 SQELEKCQSERDQYKLMAEQLQERYQALKKKYRELIQEAAGFGDPSIPPEKENKNLAQLLSESREQNKKLKEEVEELRQK   94 (319)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCccCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHH


Q ss_pred             HhHhHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008082          185 LSYCKESESQALEDVRKSQ------------MQLETANANLEMLRSDGIKATEAYNTLSLELELSKARVKSLEELVSKLQ  252 (578)
Q Consensus       185 l~e~e~~~s~l~~~~~el~------------~qLEea~~~le~l~~e~~~l~~~~~~l~~eLe~~~~e~~~Le~ei~kL~  252 (578)
                      +.++...+--+...+....            ..-+.+=..++.+......|+..+.++..+.+++..+...+...+.+|+
T Consensus        95 l~E~qGD~KlLR~~la~~r~~~~~~~~~~~~~ere~lV~qLEk~~~q~~qLe~d~qs~lDEkeEl~~ERD~yk~K~~RLN  174 (319)
T PF09789_consen   95 LNEAQGDIKLLREKLARQRVGDEGIGARHFPHEREDLVEQLEKLREQIEQLERDLQSLLDEKEELVTERDAYKCKAHRLN  174 (319)
T ss_pred             HHHHhchHHHHHHHHHhhhhhhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH


Q ss_pred             HHHHhhhhhhhh--ccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 008082          253 NDLLNSSNKLAE--SMGDVHLSQKNGENEEIDKLKGELDLARNELRQLRSALD  303 (578)
Q Consensus       253 ~el~~~~~k~~~--~e~~~~~~~~~e~~eei~eL~~el~~le~EieeL~s~LE  303 (578)
                      .++..+-+-...  -+++.+..+..=..+.+..++.+...+...|...++.|+
T Consensus       175 ~ELn~~L~g~~~rivDIDaLi~ENRyL~erl~q~qeE~~l~k~~i~KYK~~le  227 (319)
T PF09789_consen  175 HELNYILNGDENRIVDIDALIMENRYLKERLKQLQEEKELLKQTINKYKSALE  227 (319)
T ss_pred             HHHHHHhCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH

>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=87.89  E-value=4.6  Score=39.35  Aligned_cols=11  Identities=36%  Similarity=0.386  Sum_probs=4.4

Q ss_pred             HHHHHHHHHHH
Q 008082          288 LDLARNELRQL  298 (578)
Q Consensus       288 l~~le~EieeL  298 (578)
                      +..++.|-..|
T Consensus       167 ~~~l~~En~~L  177 (194)
T PF08614_consen  167 LRKLEEENREL  177 (194)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            33344444444

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.

>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein

Probab=87.85  E-value=29  Score=34.10  Aligned_cols=29  Identities=21%  Similarity=0.431  Sum_probs=17.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008082          281 IDKLKGELDLARNELRQLRSALDASETRY  309 (578)
Q Consensus       281 i~eL~~el~~le~EieeL~s~LE~aE~~l  309 (578)
                      +..|...+..+..++...+...+.--..+
T Consensus       133 ~~~l~~e~erL~aeL~~er~~~e~q~~~F  161 (202)
T PF06818_consen  133 LGSLRREVERLRAELQRERQRREEQRSSF  161 (202)
T ss_pred             chhHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence            56666667777777766665555433333

Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=87.72  E-value=64  Score=37.89  Aligned_cols=34  Identities=32%  Similarity=0.421  Sum_probs=17.5

Q ss_pred             HHHHHHHHHHHHHHHhHhHHHHHhhHHHHHHhHH
Q 008082          344 ELKNVKAQIEELRANLLDKETELQSISEENEGLN  377 (578)
Q Consensus       344 el~~~~~eleel~~~l~d~E~eL~~L~ee~~~L~  377 (578)
                      ++...+.+-+++.-.+.+....++.|++-++.|.
T Consensus       905 ki~s~kqeqee~~v~~~~~~~~i~alk~~l~dL~  938 (970)
T KOG0946|consen  905 KIVSNKQEQEELLVLLADQKEKIQALKEALEDLN  938 (970)
T ss_pred             cccchhhhHHHHHHHHhhHHHHHHHHHHHHHHhC
Confidence            3334445555555555555555555555555544

>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=87.23  E-value=35  Score=34.34  Aligned_cols=63  Identities=17%  Similarity=0.227  Sum_probs=27.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHH
Q 008082          128 ALGSAMNEIQRLKFQLEKVAESEAAQTKHAESAYAEMQNLRIELTETLSLVEKLKNELSYCKE  190 (578)
Q Consensus       128 ~L~~~~~el~klr~qle~~~~ak~~~~k~~~~le~el~eL~~el~e~~~eie~l~~~l~e~e~  190 (578)
                      +|..-+.++.+++..+=....+-....+....+..+.+.|..+-.....+|-.+...+..++.
T Consensus         5 ~ir~K~~~lek~k~~i~~e~~~~e~ee~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~   67 (230)
T PF10146_consen    5 EIRNKTLELEKLKNEILQEVESLENEEKCLEEYRKEMEELLQERMAHVEELRQINQDINTLEN   67 (230)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344455555555555544444444444444444444444444444333333333333333333

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.

>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]

Probab=87.21  E-value=78  Score=38.32  Aligned_cols=56  Identities=21%  Similarity=0.290  Sum_probs=22.9

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008082          200 RKSQMQLETANANLEMLRSDGIKATEAYNTLSLELELSKARVKSLEELVSKLQNDL  255 (578)
Q Consensus       200 ~el~~qLEea~~~le~l~~e~~~l~~~~~~l~~eLe~~~~e~~~Le~ei~kL~~el  255 (578)
                      ..+...+.........+...+..+...+..+...+..+...+..+...+..+...+
T Consensus       385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~~~~~~  440 (908)
T COG0419         385 KQLEEAIQELKEELAELSAALEEIQEELEELEKELEELERELEELEEEIKKLEEQI  440 (908)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333344444444444444444444444444444444444444444444444433

>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=87.08  E-value=12  Score=36.42  Aligned_cols=19  Identities=21%  Similarity=0.363  Sum_probs=7.0

Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q 008082          197 EDVRKSQMQLETANANLEM  215 (578)
Q Consensus       197 ~~~~el~~qLEea~~~le~  215 (578)
                      ..+..+...|.+....++.
T Consensus       130 ~~~~~l~~~l~ek~k~~e~  148 (194)
T PF08614_consen  130 EKIKDLEEELKEKNKANEI  148 (194)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333333

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.

>PF05276 SH3BP5: SH3 domain-binding protein 5 (SH3BP5); InterPro: IPR007940 The SH3 domain-binding protein inhibits the auto and transphophorylation of BTK and acts as a negative regulator of BTK-related signalling in B cells

Probab=87.05  E-value=37  Score=34.39  Aligned_cols=129  Identities=15%  Similarity=0.156  Sum_probs=85.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH-HHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHH
Q 008082          130 GSAMNEIQRLKFQLEKVAESEAAQTKHAESAYAEMQNLR-IELT-ETLSLVEKLKNELSYCKESESQALEDVRKSQMQLE  207 (578)
Q Consensus       130 ~~~~~el~klr~qle~~~~ak~~~~k~~~~le~el~eL~-~el~-e~~~eie~l~~~l~e~e~~~s~l~~~~~el~~qLE  207 (578)
                      ..+..+.++.-..|+.+...+..+-..+.-++..+..-. ..++ ..+..+.....++.+++..................
T Consensus        73 ~~aq~e~q~Aa~~yerA~~~h~aAKe~v~laEq~l~~~~~~~~D~~wqEmLn~A~~kVneAE~ek~~ae~eH~~~~~~~~  152 (239)
T PF05276_consen   73 KEAQQEAQKAALQYERANSMHAAAKEMVALAEQSLMSDSNWTFDPAWQEMLNHATQKVNEAEQEKTRAEREHQRRARIYN  152 (239)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344446677777788888888888777777777665543 2344 33456677777788888888888877777777777


Q ss_pred             HHHHHHHHHHhhh-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008082          208 TANANLEMLRSDG-------IKATEAYNTLSLELELSKARVKSLEELVSKLQNDLLNS  258 (578)
Q Consensus       208 ea~~~le~l~~e~-------~~l~~~~~~l~~eLe~~~~e~~~Le~ei~kL~~el~~~  258 (578)
                      .+...+..|.+.+       ..+-+........|+..+..+..|+..|...+..+...
T Consensus       153 ~ae~~v~~Lek~lkr~I~KSrPYfe~K~~~~~~l~~~k~~v~~Le~~v~~aK~~Y~~A  210 (239)
T PF05276_consen  153 EAEQRVQQLEKKLKRAIKKSRPYFELKAKFNQQLEEQKEKVEELEAKVKQAKSRYSEA  210 (239)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7777777666654       22223334445566666777777777777777666544

>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]

Probab=86.70  E-value=49  Score=35.51  Aligned_cols=117  Identities=19%  Similarity=0.236  Sum_probs=55.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHH
Q 008082          128 ALGSAMNEIQRLKFQLEKVAESEAAQTKHAESAYAEMQNLRIELTETLSLVEKLKNELSYCKESESQALEDVRKSQMQLE  207 (578)
Q Consensus       128 ~L~~~~~el~klr~qle~~~~ak~~~~k~~~~le~el~eL~~el~e~~~eie~l~~~l~e~e~~~s~l~~~~~el~~qLE  207 (578)
                      .|++..-+|.-+|.++..+...+.........       .+.++..+..+-+.++.++..+......+       +..|.
T Consensus        75 qlddi~~qlr~~rtel~~a~~~k~~~e~er~~-------~~~El~~~r~e~~~v~~~~~~a~~n~~kA-------qQ~la  140 (499)
T COG4372          75 QLDDIRPQLRALRTELGTAQGEKRAAETEREA-------ARSELQKARQEREAVRQELAAARQNLAKA-------QQELA  140 (499)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHH
Confidence            35555556666666666665555544443333       33333333333333333333333333333       33444


Q ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008082          208 TANANLEMLRSDGIKATEAYNTLSLELELSKARVKSLEELVSKLQNDLLNS  258 (578)
Q Consensus       208 ea~~~le~l~~e~~~l~~~~~~l~~eLe~~~~e~~~Le~ei~kL~~el~~~  258 (578)
                      .+......+.+++..+-..+..+..++..+...-+.|+.-++.|+.+.-++
T Consensus       141 r~t~Q~q~lqtrl~~l~~qr~ql~aq~qsl~a~~k~LQ~s~~Qlk~~~~~L  191 (499)
T COG4372         141 RLTKQAQDLQTRLKTLAEQRRQLEAQAQSLQASQKQLQASATQLKSQVLDL  191 (499)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444444444444444444455455555544454455554455555444444

>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain

Probab=85.89  E-value=49  Score=34.67  Aligned_cols=133  Identities=20%  Similarity=0.218  Sum_probs=64.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHH-HHHHHH
Q 008082          125 DSAALGSAMNEIQRLKFQLEKVAESEAAQTKHAESAYAEMQNLRIELTETLSLVEKLKNELSYCKESESQALE-DVRKSQ  203 (578)
Q Consensus       125 ~~~~L~~~~~el~klr~qle~~~~ak~~~~k~~~~le~el~eL~~el~e~~~eie~l~~~l~e~e~~~s~l~~-~~~el~  203 (578)
                      -++.|.--+.+|..-+..++..........  +..+...+..|..+.......++.|+...=+++...-+-+. .|+.+.
T Consensus       107 ltn~L~rkl~qLr~EK~~lE~~Le~EqE~~--V~kL~k~i~~Le~e~~~~q~~le~Lr~EKVdlEn~LE~EQE~lvN~L~  184 (310)
T PF09755_consen  107 LTNDLSRKLNQLRQEKVELENQLEQEQEYL--VNKLQKKIERLEKEKSAKQEELERLRREKVDLENTLEQEQEALVNRLW  184 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHHH--HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence            345567777777777777777666544332  22344444445444444444555555554455544444332 345555


Q ss_pred             HHHHHHHHHHHHHHhhhHH-------HHHHHH-HH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008082          204 MQLETANANLEMLRSDGIK-------ATEAYN-TL-SLELELSKARVKSLEELVSKLQNDLLNSS  259 (578)
Q Consensus       204 ~qLEea~~~le~l~~e~~~-------l~~~~~-~l-~~eLe~~~~e~~~Le~ei~kL~~el~~~~  259 (578)
                      .+++.+...-..|...+..       ..+... .+ ..-.+.....+..|..+|..|..++....
T Consensus       185 Kqm~~l~~eKr~Lq~~l~~~~s~~~s~~d~~~~~~~~Dt~e~~~shI~~Lr~EV~RLR~qL~~sq  249 (310)
T PF09755_consen  185 KQMDKLEAEKRRLQEKLEQPVSAPPSPRDTVNVSEENDTAERLSSHIRSLRQEVSRLRQQLAASQ  249 (310)
T ss_pred             HHHHHHHHHHHHHHHHHccccCCCCCcchHHhhcccCCchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5555555444444444321       010000 00 01123344455666666666666665543

>COG2433 Uncharacterized conserved protein [Function unknown]

Probab=85.88  E-value=22  Score=40.24  Aligned_cols=8  Identities=13%  Similarity=0.526  Sum_probs=2.9

Q ss_pred             HHHHHHHH
Q 008082          245 EELVSKLQ  252 (578)
Q Consensus       245 e~ei~kL~  252 (578)
                      +..|..|+
T Consensus       480 ~~~I~~L~  487 (652)
T COG2433         480 DRRIERLE  487 (652)
T ss_pred             HHHHHHHH
Confidence            33333333

>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily

Probab=85.53  E-value=66  Score=35.84  Aligned_cols=24  Identities=13%  Similarity=0.375  Sum_probs=11.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Q 008082          281 IDKLKGELDLARNELRQLRSALDA  304 (578)
Q Consensus       281 i~eL~~el~~le~EieeL~s~LE~  304 (578)
                      +..|+++.+..+.-...+-.+++.
T Consensus       357 l~~L~Re~~~~~~~Y~~l~~r~ee  380 (498)
T TIGR03007       357 LTQLNRDYEVNKSNYEQLLTRRES  380 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444444444444444444444443

Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.

>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription

Probab=84.97  E-value=42  Score=33.13  Aligned_cols=45  Identities=20%  Similarity=0.322  Sum_probs=24.2

Q ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008082          458 EALMKVGFLTEEADKSSRRAARVTEQLDAAQAASTEMEAELRKLK  502 (578)
Q Consensus       458 ~~~~kl~~l~~ele~~~~~~~~l~eql~~ae~~~~~lEaEL~klr  502 (578)
                      .+..++..++..++.....+..+..++.........+.....-|.
T Consensus        95 ~~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~  139 (221)
T PF04012_consen   95 DLEEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELK  139 (221)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444555555555555555555555555555555555555444

The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].

>TIGR00634 recN DNA repair protein RecN

Probab=84.73  E-value=79  Score=36.06  Aligned_cols=12  Identities=42%  Similarity=0.412  Sum_probs=4.9

Q ss_pred             HHHHHHHHHHHH
Q 008082          287 ELDLARNELRQL  298 (578)
Q Consensus       287 el~~le~EieeL  298 (578)
                      .+..+-..+...
T Consensus       361 ~l~~~a~~Ls~~  372 (563)
T TIGR00634       361 ELDKAAVALSLI  372 (563)
T ss_pred             HHHHHHHHHHHH
Confidence            333344444444

All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.

>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure

Probab=84.33  E-value=19  Score=28.56  Aligned_cols=45  Identities=24%  Similarity=0.370  Sum_probs=38.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 008082          465 FLTEEADKSSRRAARVTEQLDAAQAASTEMEAELRKLKVQSDQWR  509 (578)
Q Consensus       465 ~l~~ele~~~~~~~~l~eql~~ae~~~~~lEaEL~klr~q~eq~R  509 (578)
                      .++.+|.......-.+..+|..++.++..|+.+|..|+-+.+..|
T Consensus        15 ~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r   59 (61)
T PF08826_consen   15 AIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEELR   59 (61)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            457777777777778889999999999999999999998887765

It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.

>PRK10884 SH3 domain-containing protein; Provisional

Probab=84.23  E-value=19  Score=35.63  Aligned_cols=26  Identities=15%  Similarity=0.180  Sum_probs=10.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008082          227 YNTLSLELELSKARVKSLEELVSKLQ  252 (578)
Q Consensus       227 ~~~l~~eLe~~~~e~~~Le~ei~kL~  252 (578)
                      +..+..++..++.++..|+.++..++
T Consensus       141 n~~L~~~l~~~~~~~~~l~~~~~~~~  166 (206)
T PRK10884        141 NQKLKNQLIVAQKKVDAANLQLDDKQ  166 (206)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333443333333333333

>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]

Probab=83.61  E-value=1.1e+02  Score=37.03  Aligned_cols=43  Identities=14%  Similarity=0.208  Sum_probs=30.4

Q ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008082          460 LMKVGFLTEEADKSSRRAARVTEQLDAAQAASTEMEAELRKLK  502 (578)
Q Consensus       460 ~~kl~~l~~ele~~~~~~~~l~eql~~ae~~~~~lEaEL~klr  502 (578)
                      ..+...++.++.+....+.++..++..+.+-...++..+.++.
T Consensus       848 k~~~~~~~~e~~e~~k~~~~~~~~~tkl~~~i~~~es~ie~~~  890 (1141)
T KOG0018|consen  848 KSKFEKKEDEINEVKKILRRLVKELTKLDKEITSIESKIERKE  890 (1141)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHH
Confidence            4455666666666677777777777777777777777777754

>PF14915 CCDC144C: CCDC144C protein coiled-coil region

Probab=83.39  E-value=61  Score=33.72  Aligned_cols=57  Identities=14%  Similarity=0.154  Sum_probs=33.4

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008082          200 RKSQMQLETANANLEMLRSDGIKATEAYNTLSLELELSKARVKSLEELVSKLQNDLL  256 (578)
Q Consensus       200 ~el~~qLEea~~~le~l~~e~~~l~~~~~~l~~eLe~~~~e~~~Le~ei~kL~~el~  256 (578)
                      +-+..+|-.++..+.+|..++....+.+..-+.-|+.+.+++...+..+..+...+.
T Consensus       147 e~LsQqLskaesK~nsLe~elh~trdaLrEKtL~lE~~QrdL~Qtq~q~KE~e~m~q  203 (305)
T PF14915_consen  147 EILSQQLSKAESKFNSLEIELHHTRDALREKTLALESVQRDLSQTQCQIKEIEHMYQ  203 (305)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444555555666666666666555555555555566666666666666666655443

>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=83.08  E-value=30  Score=36.50  Aligned_cols=38  Identities=26%  Similarity=0.184  Sum_probs=17.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008082          222 KATEAYNTLSLELELSKARVKSLEELVSKLQNDLLNSS  259 (578)
Q Consensus       222 ~l~~~~~~l~~eLe~~~~e~~~Le~ei~kL~~el~~~~  259 (578)
                      ..-..++.+..++-....+...+...+.-+..++..++
T Consensus        96 ~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~~L~  133 (314)
T PF04111_consen   96 EYWREYNELQLELIEFQEERDSLKNQYEYASNQLDRLR  133 (314)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344444444444444444444444444444444443

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.

>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion

Probab=82.92  E-value=46  Score=31.97  Aligned_cols=11  Identities=9%  Similarity=0.413  Sum_probs=3.9

Q ss_pred             HHHHHHHHHHH
Q 008082          204 MQLETANANLE  214 (578)
Q Consensus       204 ~qLEea~~~le  214 (578)
                      ..+..+...+.
T Consensus       130 ~~l~~l~~~~~  140 (191)
T PF04156_consen  130 ERLDSLDESIK  140 (191)
T ss_pred             HHHHHHHHHHH
Confidence            33333333333

The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].

>PRK15422 septal ring assembly protein ZapB; Provisional

Probab=82.45  E-value=21  Score=29.58  Aligned_cols=67  Identities=18%  Similarity=0.190  Sum_probs=34.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 008082          167 LRIELTETLSLVEKLKNELSYCKESESQALEDVRKSQMQLETANANLEMLRSDGIKATEAYNTLSLE  233 (578)
Q Consensus       167 L~~el~e~~~eie~l~~~l~e~e~~~s~l~~~~~el~~qLEea~~~le~l~~e~~~l~~~~~~l~~e  233 (578)
                      |..++..+..+|.=|+..+++++.....+...+..+...-+.+..+...+..+...|.+.+.++-..
T Consensus         9 LE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~LLGk   75 (79)
T PRK15422          9 LEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGR   75 (79)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3344444444555555555555555555555555555555555555555555555555544444433

>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=82.36  E-value=35  Score=35.96  Aligned_cols=87  Identities=15%  Similarity=0.108  Sum_probs=47.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008082          167 LRIELTETLSLVEKLKNELSYCKESESQALEDVRKSQMQLETANANLEMLRSDGIKATEAYNTLSLELELSKARVKSLEE  246 (578)
Q Consensus       167 L~~el~e~~~eie~l~~~l~e~e~~~s~l~~~~~el~~qLEea~~~le~l~~e~~~l~~~~~~l~~eLe~~~~e~~~Le~  246 (578)
                      +..++..+..+...+...+..++.....+...+..++.++......-...-.....+.-.+.....+.+.+...+.....
T Consensus        48 ~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~  127 (314)
T PF04111_consen   48 LEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYASN  127 (314)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344444444444444455555555555555555555555555555555555555555555666666666666666666


Q ss_pred             HHHHHHH
Q 008082          247 LVSKLQN  253 (578)
Q Consensus       247 ei~kL~~  253 (578)
                      .+.+|+.
T Consensus       128 ~L~~L~k  134 (314)
T PF04111_consen  128 QLDRLRK  134 (314)
T ss_dssp             HHHCHHT
T ss_pred             HHHHHHh
Confidence            6666664

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.

>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=82.18  E-value=60  Score=32.83  Aligned_cols=78  Identities=13%  Similarity=0.048  Sum_probs=43.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 008082          147 AESEAAQTKHAESAYAEMQNLRIELTETLSLVEKLKNELSYCKESESQALEDVRKSQMQLETANANLEMLRSDGIKAT  224 (578)
Q Consensus       147 ~~ak~~~~k~~~~le~el~eL~~el~e~~~eie~l~~~l~e~e~~~s~l~~~~~el~~qLEea~~~le~l~~e~~~l~  224 (578)
                      .......-+.......+...+..++..+..+++.+...+..++..++.....+..++.+++.....-..+.--+..+-
T Consensus        34 ~~~~~~sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m~~m~  111 (251)
T PF11932_consen   34 VQAAQQSQKRIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVPLMEQMI  111 (251)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333444444555666666666666666666666666666666666666666666666555555444443333333

However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.

>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=81.77  E-value=24  Score=28.51  Aligned_cols=66  Identities=18%  Similarity=0.214  Sum_probs=40.7

Q ss_pred             HHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 008082          169 IELTETLSLVEKLKNELSYCKESESQALEDVRKSQMQLETANANLEMLRSDGIKATEAYNTLSLEL  234 (578)
Q Consensus       169 ~el~e~~~eie~l~~~l~e~e~~~s~l~~~~~el~~qLEea~~~le~l~~e~~~l~~~~~~l~~eL  234 (578)
                      .++..+..+|.=|...+++++.....++..+..++...+.+....+.+..+-..|.+.+.++-..+
T Consensus        11 ~KiqqAvdTI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQerlrsLLGkm   76 (79)
T COG3074          11 AKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQERLRALLGKM   76 (79)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            334444445555666666666666666666666666666666666666666666666655554443

>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells

Probab=81.67  E-value=65  Score=32.84  Aligned_cols=32  Identities=16%  Similarity=0.167  Sum_probs=19.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHH
Q 008082          390 SKLAVELNKLEAEVVEFKASILDKETELMSLT  421 (578)
Q Consensus       390 ~El~k~~kkle~e~~eLk~~L~e~E~~lq~~~  421 (578)
                      .++...+..+......+...|.+.+.-|..+.
T Consensus       223 ~~~~~k~~~l~~~~~~~~~~L~~a~~~L~~a~  254 (264)
T PF06008_consen  223 EDLEKKKQELSEQQNEVSETLKEAEDLLDQAN  254 (264)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44555555566666666666666666555543

Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex

>TIGR01005 eps_transp_fam exopolysaccharide transport protein family

Probab=81.29  E-value=1.2e+02  Score=35.75  Aligned_cols=27  Identities=11%  Similarity=0.149  Sum_probs=18.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008082          158 ESAYAEMQNLRIELTETLSLVEKLKNE  184 (578)
Q Consensus       158 ~~le~el~eL~~el~e~~~eie~l~~~  184 (578)
                      .-+..++..++.++...+..+...+.+
T Consensus       197 ~~L~~ql~~l~~~l~~aE~~l~~fk~~  223 (754)
T TIGR01005       197 DFLAPEIADLSKQSRDAEAEVAAYRAQ  223 (754)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345566777777777777777776665

The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.

>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]

Probab=80.32  E-value=1.4e+02  Score=35.67  Aligned_cols=27  Identities=15%  Similarity=0.122  Sum_probs=15.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 008082          236 LSKARVKSLEELVSKLQNDLLNSSNKL  262 (578)
Q Consensus       236 ~~~~e~~~Le~ei~kL~~el~~~~~k~  262 (578)
                      .....+.+|...|.++..+...|..|+
T Consensus       463 ~~~~~~~~L~d~le~~~~~~~~~~~K~  489 (980)
T KOG0980|consen  463 DVEEENTNLNDQLEELQRAAGRAETKT  489 (980)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            444455566666666666666665554

>PF15066 CAGE1: Cancer-associated gene protein 1 family

Probab=80.16  E-value=1e+02  Score=34.06  Aligned_cols=79  Identities=15%  Similarity=0.158  Sum_probs=49.2

Q ss_pred             HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccccccccccchhHHHHHHHHHHHHHHH
Q 008082          215 MLRSDGIKATEAYNTLSLELELSKARVKSLEELVSKLQNDLLNSSNKLAESMGDVHLSQKNGENEEIDKLKGELDLARNE  294 (578)
Q Consensus       215 ~l~~e~~~l~~~~~~l~~eLe~~~~e~~~Le~ei~kL~~el~~~~~k~~~~e~~~~~~~~~e~~eei~eL~~el~~le~E  294 (578)
                      ...+-+..+...+......|.+++.+...|+-++.+++..+..+..+|.+ ++-    +.+.--...-++.+-+..-+.+
T Consensus       387 d~~k~lqnLqe~la~tqk~LqEsr~eKetLqlelkK~k~nyv~LQEry~~-eiQ----qKnksvsqclEmdk~LskKeee  461 (527)
T PF15066_consen  387 DIEKTLQNLQEALANTQKHLQESRNEKETLQLELKKIKANYVHLQERYMT-EIQ----QKNKSVSQCLEMDKTLSKKEEE  461 (527)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHHHHHH-HHH----HhhhHHHHHHHHHHHhhhhHHH
Confidence            33444566677777777888888888888888888888888777766643 110    1111112244555555555666


Q ss_pred             HHHH
Q 008082          295 LRQL  298 (578)
Q Consensus       295 ieeL  298 (578)
                      |+.|
T Consensus       462 verL  465 (527)
T PF15066_consen  462 VERL  465 (527)
T ss_pred             HHHH
Confidence            6665

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	578
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	2e-16
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	8e-15
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	5e-14
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	4e-13
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	2e-12
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	7e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-14
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-06
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	1e-09
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	9e-09
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	1e-08
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	2e-04

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 81.8 bits (202), Expect = 2e-16
 Identities = 48/333 (14%), Positives = 131/333 (39%), Gaps = 16/333 (4%)

Query: 132  AMNEIQRLKFQLEKVAESEAAQTKHAESAYAEMQNLRIELTETLSLVEKLKNELSYCKES 191
             M        + ++  +   A+ K  E  + ++   +  L E L    +L  E    +  
Sbjct: 858  EMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVR 917

Query: 192  ESQALEDVRKSQMQLETANANLEMLRSDGIKATEAYNTLSLELELSKARVKSLEELVSKL 251
             +   +++ +   ++E   A +E       +       +  ++   + +++  E    KL
Sbjct: 918  LAAKKQELEEILHEME---ARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKL 974

Query: 252  QNDLLNSSNKLAESMGDVHLSQKNGENEEIDKLKGELDLARNELRQLRSALDASE----- 306
            Q + + +  K+ +   D+ + +     ++ +KL  E  L    +  L + L   E     
Sbjct: 975  QLEKVTADGKIKKMEDDILIME-----DQNNKLTKERKLLEERVSDLTTNLAEEEEKAKN 1029

Query: 307  -TRYQEEYIQSTLQIRSAYEQLERAKSESSQREADLETELKNVKAQIEELRANLLDKETE 365
             T+ + ++     ++    ++ E+++ E  + +  LE E  ++  QI EL+A + + + +
Sbjct: 1030 LTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQ 1089

Query: 366  LQSISEENEGLNLKIKTNESNQRDSKLAVELNKLEAEVVEFKASILDKETELMSLTEQNG 425
            L    EE +    +++  +   + +    ++ +LE+ + + +  +  ++       +Q  
Sbjct: 1090 LAKKEEELQAALARLE--DETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKR 1147

Query: 426  MLKMEIENREMERNKVNDEAISLAEAARVAERE 458
             L  E+E  + E     D   +  E      ++
Sbjct: 1148 DLSEELEALKTELEDTLDTTATQQELRGSDYKD 1180

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 77.2 bits (190), Expect = 8e-15
 Identities = 59/348 (16%), Positives = 140/348 (40%), Gaps = 29/348 (8%)

Query: 29   RVSELESQLAQLQEDLKKAKEQLNASDSWKRRAQQEAEEAKKQLSAMSARLEESQQQLLE 88
             +   + +L + +E  +KA+ +L   +    +  +E    +++L A +    E+++  + 
Sbjct: 858  EMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVR 917

Query: 89   ITTSEDTRVEELRQLSQDRDKAWQS--ELDAVQKQQSMDSAALGSAMNEIQRLKFQLEKV 146
            +   +    E L ++    ++  +   +L A +K+       L   + E +  + +L+  
Sbjct: 918  LAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLE 977

Query: 147  AESEAAQTKHAESAYAEMQNLRIELTETLSLVEKLKNELSYCKESESQALEDVRKSQMQL 206
              +   + K  E     M++   +LT+   L+E+  ++L+     E +  +++ K + + 
Sbjct: 978  KVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKH 1037

Query: 207  ETANANLEMLRSDGIKATEAYNTLSLELELSKARVKSLEELVSKLQNDLLNSSNKLAESM 266
            E+  + LE+      K+ +    +  +LE        L E +++LQ  +     +LA+  
Sbjct: 1038 ESMISELEVRLKKEEKSRQELEKIKRKLE---GESSDLHEQIAELQAQIAELKAQLAKK- 1093

Query: 267  GDVHLSQKNGENEEIDKLKGELDLARNELRQLRSALDASETRYQEEYIQSTLQIRSAYEQ 326
                        EE+      L+   ++       +   E+   +      LQ     E+
Sbjct: 1094 -----------EEELQAALARLEDETSQKNNALKKIRELESHISD------LQEDLESEK 1136

Query: 327  LERAKSESSQREADLETELKNVKAQIEELRANLLDKETELQSISEENE 374
              R K+E  +R  DL  EL+ +K ++E+     LD     Q +   + 
Sbjct: 1137 AARNKAEKQKR--DLSEELEALKTELED----TLDTTATQQELRGSDY 1178

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 74.5 bits (183), Expect = 5e-14
 Identities = 52/325 (16%), Positives = 131/325 (40%), Gaps = 23/325 (7%)

Query: 28   SRVSELESQLAQLQEDLKKAKEQLNASDSWKRRAQQEAEEAKKQLSAMSARLEESQQQLL 87
            + + ELE +  QL E+    +E+L A       A++       +   +   L E + ++ 
Sbjct: 878  AELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARIE 937

Query: 88   EITTSEDTRVEELRQLSQDRDKAWQSELDAVQKQQSMDSAALGSAMNEIQRLKFQLEKVA 147
            E          E +++ Q +    + +L+  +  +        +A  +I++++  +  + 
Sbjct: 938  EEEERSQQLQAEKKKM-QQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIME 996

Query: 148  ESEAAQTKHAESAYAEMQNLRIEL---TETLSLVEKLKNELSYCKESESQALEDVRKSQM 204
            +     TK  +     + +L   L    E    + KLKN+           L+   KS+ 
Sbjct: 997  DQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQ 1056

Query: 205  QLETANANLEMLRSDGIKATEAYNTLSLELELSKARVKSLEELVSKLQNDLLNSSNKLAE 264
            +LE     LE             + L  ++   +A++  L+  ++K + +L  +  +L +
Sbjct: 1057 ELEKIKRKLE----------GESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLED 1106

Query: 265  SMGDVHLSQKNGENEEIDKLKGELDLARNELRQLRSALDASETRYQEEYIQSTLQIRSAY 324
                   SQKN   ++I +L+  +   + +L   ++A + +E + ++     + ++ +  
Sbjct: 1107 -----ETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKRD----LSEELEALK 1157

Query: 325  EQLERAKSESSQREADLETELKNVK 349
             +LE     ++ ++    ++ K+  
Sbjct: 1158 TELEDTLDTTATQQELRGSDYKDDD 1182

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 71.4 bits (175), Expect = 4e-13
 Identities = 32/266 (12%), Positives = 101/266 (37%), Gaps = 6/266 (2%)

Query: 24   KQRPSRVSELESQLAQLQEDLKKAKEQLNASDSWKRRAQQEAEEAKKQLSAMSARLEESQ 83
             +  ++  ELE  L +++  +++ +E+     + K++ QQ+  + ++QL    A  ++ Q
Sbjct: 916  VRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQ 975

Query: 84   QQLLEITTSEDTRVEELRQLSQDRDK------AWQSELDAVQKQQSMDSAALGSAMNEIQ 137
             + +          +++  +    +K        +  +  +    + +     +      
Sbjct: 976  LEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKN 1035

Query: 138  RLKFQLEKVAESEAAQTKHAESAYAEMQNLRIELTETLSLVEKLKNELSYCKESESQALE 197
            + +  + ++      + K  +      + L  E ++    + +L+ +++  K   ++  E
Sbjct: 1036 KHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEE 1095

Query: 198  DVRKSQMQLETANANLEMLRSDGIKATEAYNTLSLELELSKARVKSLEELVSKLQNDLLN 257
            +++ +  +LE   +          +     + L  +LE  KA     E+    L  +L  
Sbjct: 1096 ELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKRDLSEELEA 1155

Query: 258  SSNKLAESMGDVHLSQKNGENEEIDK 283
               +L +++      Q+   ++  D 
Sbjct: 1156 LKTELEDTLDTTATQQELRGSDYKDD 1181

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 69.1 bits (169), Expect = 2e-12
 Identities = 60/388 (15%), Positives = 134/388 (34%), Gaps = 54/388 (13%)

Query: 57   WKRRAQQEAEEAKKQLSAMSARLEESQQQLLEITTSEDTRVEELRQLSQDRDKAWQSELD 116
               R ++E +   ++L     R ++++ +L E+        EE   L +      +   +
Sbjct: 851  KVTRQEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAE 910

Query: 117  AVQKQQSMDSAALGSAMNEIQRLKFQLEKVAESEAAQTKHAESAYAEMQNLRIELTETLS 176
            A + +       L +   E++ +  ++E   E E  +++  ++   +MQ   ++L E L 
Sbjct: 911  AEEMR-----VRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLE 965

Query: 177  LVEKLKNELSYCKESESQALEDVRKSQMQLETANANLEMLRSDGIKATEAYNTLSLELEL 236
              E  + +L   K +    ++ +    + +E  N  L                       
Sbjct: 966  EEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLT---------------------- 1003

Query: 237  SKARVKSLEELVSKLQNDLLNSSNKLAESMGDVHLSQKNGENEEIDKLKGELDLARNELR 296
                 K LEE VS L  +L     K                  + + +  EL++   +  
Sbjct: 1004 --KERKLLEERVSDLTTNLAEEEEKA---------KNLTKLKNKHESMISELEVRLKKEE 1052

Query: 297  QLRSALDASETRYQEEYIQSTLQIRSAYEQLERAKSESSQREADLETELKNVKAQIEELR 356
            + R  L+  + + + E      QI     +L+   +E   + A  E EL+   A++E+  
Sbjct: 1053 KSRQELEKIKRKLEGESSDLHEQI----AELQAQIAELKAQLAKKEEELQAALARLEDET 1108

Query: 357  ANLLDKETELQSISEENEGLNLKIKTNESNQRDSKLAVELNKLEAEVVEFKASILDKETE 416
            +   +   +++ +      L   +                NK E +  +    +   +TE
Sbjct: 1109 SQKNNALKKIRELESHISDLQEDL---------ESEKAARNKAEKQKRDLSEELEALKTE 1159

Query: 417  LMSLTEQNGMLKMEIENREMERNKVNDE 444
               L +       + E R  +    +D+
Sbjct: 1160 ---LEDTLDTTATQQELRGSDYKDDDDK 1184

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 57.9 bits (140), Expect = 7e-09
 Identities = 36/205 (17%), Positives = 74/205 (36%), Gaps = 9/205 (4%)

Query: 24   KQRPSRVSELESQLAQLQED---LKKAKEQLNASDSWKRRAQQEAEEAKKQLSAMSARLE 80
                 ++ ++E  +  +++    L K ++ L    S       E EE  K L+ +  + E
Sbjct: 979  VTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHE 1038

Query: 81   ESQQQLLEITTSEDTRVEELRQLSQDRD---KAWQSELDAVQKQQSMDSAALGSAMNEIQ 137
                +L      E+   +EL ++ +  +        ++  +Q Q +   A L     E+Q
Sbjct: 1039 SMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQ 1098

Query: 138  RLKFQLEKVAESEAAQTKHAESAYAEMQNLRIELTET---LSLVEKLKNELSYCKESESQ 194
                +LE     +    K      + + +L+ +L       +  EK K +LS   E+   
Sbjct: 1099 AALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKRDLSEELEALKT 1158

Query: 195  ALEDVRKSQMQLETANANLEMLRSD 219
             LED   +    +    +      D
Sbjct: 1159 ELEDTLDTTATQQELRGSDYKDDDD 1183

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 76.4 bits (187), Expect = 1e-14
 Identities = 76/479 (15%), Positives = 155/479 (32%), Gaps = 124/479 (25%)

Query: 2   NKTPKGSPKVVERKSP----RSPALEKQRPSRVSELE-------SQLAQLQEDLKKAKEQ 50
           N     +   V R  P    R  AL + RP++   ++       + +A   +     K Q
Sbjct: 121 NDNQVFAKYNVSRLQPYLKLRQ-ALLELRPAKNVLIDGVLGSGKTWVAL--DVCLSYKVQ 177

Query: 51  LNASDS--W-KRRAQQEAEEAKKQLSAMSARLEESQQQLLEITTSEDTRVEELRQLSQDR 107
                   W   +     E   + L  +  +++ +     + +++   R+  ++   +  
Sbjct: 178 CKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRL 237

Query: 108 DKAWQSE-----LDAVQKQQSMDSAALGS-------------AMNEIQRLKFQLEKVAES 149
            K+   E     L  VQ  ++ ++  L                ++        L+  + +
Sbjct: 238 LKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMT 297

Query: 150 -EAAQTKHAESAYAEM--QNLRIELTET----LSLV-EKLKNELS---YCKESESQALED 198
               + K     Y +   Q+L  E+  T    LS++ E +++ L+     K      L  
Sbjct: 298 LTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTT 357

Query: 199 VRKSQM-QLETANA-----NLEMLRSDGIKATEAYNTLSL----------ELELSKARVK 242
           + +S +  LE A        L +              LSL           + ++K    
Sbjct: 358 IIESSLNVLEPAEYRKMFDRLSVFPPS-AHIPTI--LLSLIWFDVIKSDVMVVVNKLHKY 414

Query: 243 SLEE--------------LVSKLQND--------LLNS--------SNKLAESMGDV--- 269
           SL E              L  K++ +        +++         S+ L     D    
Sbjct: 415 SLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFY 474

Query: 270 -----HLSQKNGENEEIDKL--KGELDLA--RNELRQLRSALDASETRYQEEYIQSTLQI 320
                HL  KN E+ E   L     LD      ++R   +A +AS        I +TLQ 
Sbjct: 475 SHIGHHL--KNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNAS------GSILNTLQQ 526

Query: 321 RSAYEQ-LERAKSESSQREADLETELKNVKAQIEELRANLLDKETEL-Q-SISEENEGL 376
              Y+  +     +  +    +   L  ++  +      +  K T+L + ++  E+E +
Sbjct: 527 LKFYKPYICDNDPKYERLVNAILDFLPKIEENL------ICSKYTDLLRIALMAEDEAI 579

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.9 bits (113), Expect = 8e-06
 Identities = 44/385 (11%), Positives = 106/385 (27%), Gaps = 115/385 (29%)

Query: 198 DVRKSQMQLETANANLEMLRSDGIKATEAYNTLSLELE-LSKARVKSLEELVSKLQNDLL 256
           D    + Q +  +  L +     +   +  +   +    LSK  +             ++
Sbjct: 8   DFETGEHQYQYKDI-LSVFEDAFVDNFDCKDVQDMPKSILSKEEID-----------HII 55

Query: 257 NSSNKLAESMGDVHLSQKNGENEEIDKLKGELDLARNELRQ--LRSALDAS----ETRYQ 310
            S + +                    +L   L   + E+ Q  +   L  +     +  +
Sbjct: 56  MSKDAV----------------SGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIK 99

Query: 311 EEYIQSTLQIRSAYEQLERAKSESS-------QREADLETELKNVKAQIEELRAN----- 358
            E  Q ++  R   EQ +R  +++         R      +L+     + ELR       
Sbjct: 100 TEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRL-QPYLKLRQA---LLELRPAKNVLI 155

Query: 359 ---------------LLDKETELQ--------SISEEN---------EGLNLKIKTNESN 386
                           L  + + +        ++   N         + L  +I  N ++
Sbjct: 156 DGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTS 215

Query: 387 QRDSKLAVELNKLEAEVVEFKASILDKETELMSLTE-QNGMLKM-EIENREM-------- 436
           + D    ++L     +          +   L+     +N +L +  ++N +         
Sbjct: 216 RSDHSSNIKLRIHSIQ---------AELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSC 266

Query: 437 -----ERNKVNDEAISLAEAARVAEREALMKVGFLTEEADKSSRRAARVTEQLDAAQAAS 491
                 R K   + +S A    ++       +    +E      +      Q    +  +
Sbjct: 267 KILLTTRFKQVTDFLSAATTTHISLDH--HSMTLTPDEVKSLLLKYLDCRPQDLPREVLT 324

Query: 492 TE------MEAELRKLKVQSDQWRK 510
           T       +   +R      D W+ 
Sbjct: 325 TNPRRLSIIAESIRDGLATWDNWKH 349

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 60.5 bits (147), Expect = 1e-09
 Identities = 35/297 (11%), Positives = 90/297 (30%), Gaps = 47/297 (15%)

Query: 220  GIKATEAYNTLSLELELSKARVKSLE---ELVSKLQNDLLNSSNKLAESMGDVHLSQKNG 276
                 + Y  +       +A ++      +    L+        K            +  
Sbjct: 828  MYVVRKRYQCMRDATIALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTL 887

Query: 277  ENEEIDKLKGELDLARNELRQLRSALDASETRYQEEYIQSTLQIRSAYEQLERAKSESSQ 336
            +     +      +A+ EL++L+    + E            + +  +  LE    +  +
Sbjct: 888  KAIVYLQCCYRRMMAKRELKKLKIEARSVE------------RYKKLHIGLENKIMQLQR 935

Query: 337  READLETELKNVKAQIEELRANLLDKETELQSISEENEGLNLKIKTNESNQRDSKLAVEL 396
            +  +   E K++  ++  L      +  +L+S  E       + K              +
Sbjct: 936  KIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAK---------NATNRV 986

Query: 397  NKLEAEVVEFKASILDKETELMSLTEQNGMLKMEIENREMERNKVNDEAISLAEAARVAE 456
              L+ E+ + +  +   +TE  ++ E     K E E    E  + N              
Sbjct: 987  LSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTL------------ 1034

Query: 457  REALMKVGFLTEEADKSSRRAARVTEQLDAAQAASTEMEAELRKLKVQSDQWRKAAE 513
                     L  E ++ +RR     +  +  +    ++  E ++L++  +  R   +
Sbjct: 1035 ---------LKTEKEELNRRIHD--QAKEITETMEKKLVEETKQLELDLNDERLRYQ 1080

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 57.4 bits (139), Expect = 9e-09
 Identities = 33/247 (13%), Positives = 81/247 (32%), Gaps = 16/247 (6%)

Query: 10   KVVERKSPRSPALEKQRPSRVSELESQLAQLQEDLKKAKEQLNAS----DSWKRRAQQEA 65
            + + R        +       S +  +  +           L A       ++R   +  
Sbjct: 846  QALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVYLQCCYRRMMAKRE 905

Query: 66   EEAKKQLSAMSARLEESQQQLLEITTSEDTRVEELRQLSQDRDKAWQSELDAVQKQQSMD 125
             +  K  +    R ++    L       + ++ +L++   +++K ++S L+ +   +   
Sbjct: 906  LKKLKIEARSVERYKKLHIGL-------ENKIMQLQRKIDEQNKEYKSLLEKMNNLEI-- 956

Query: 126  SAALGSAMNEIQRLKFQLEKVAESEAAQTKHAESAYAEMQNLRIELTETLSLVEKLKNEL 185
                 +   +++    +L    E     T    S   E+  LR EL +T +  + ++   
Sbjct: 957  --TYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWA 1014

Query: 186  SYCKESESQALEDVRKSQMQLETANANLEMLRSDGIKATEAYNTLSLELELSKARVKSLE 245
               K    Q + ++++    L+T    L     D  K         L  E  +  +  L 
Sbjct: 1015 DKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEITETMEKKLVEETKQLELD-LN 1073

Query: 246  ELVSKLQ 252
            +   + Q
Sbjct: 1074 DERLRYQ 1080

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 56.7 bits (137), Expect = 1e-08
 Identities = 39/260 (15%), Positives = 87/260 (33%), Gaps = 19/260 (7%)

Query: 59   RRAQQEAEEAKKQLSAMSARLEESQQQLLEITTSEDTRVEELRQLSQDRDKAWQSELDAV 118
            R+  Q   +A   L A+        +  + +   +   +++  +    R   +   L A+
Sbjct: 832  RKRYQCMRDATIALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLAR-VHYHRTLKAI 890

Query: 119  QKQQSMDSAALGSAMNEIQRLKFQLEKVAESEAAQTKHAESAYAEMQNLRIELTETLSLV 178
               Q              + +  +  K  + EA   +  +  +  ++N  ++L   +   
Sbjct: 891  VYLQC----------CYRRMMAKRELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQ 940

Query: 179  EKLKNELSYCKESE----SQALEDVRKSQMQLETANANLEMLRSDGIKATEAYNTLSLEL 234
             K    L     +     S   E +R    +L  +    +   +  +   E    L  EL
Sbjct: 941  NKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKEL 1000

Query: 235  ELSKARVKSLEELVSKLQNDLLNSSNKLAESMGDVHLSQKNGENEEIDKLKGELDLA--- 291
              ++   K++EE   K +++     ++L E    +   ++       D+ K   +     
Sbjct: 1001 HQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEITETMEKK 1060

Query: 292  -RNELRQLRSALDASETRYQ 310
               E +QL   L+    RYQ
Sbjct: 1061 LVEETKQLELDLNDERLRYQ 1080

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C* Length = 3245

 Score = 43.7 bits (103), Expect = 2e-04
 Identities = 25/235 (10%), Positives = 80/235 (34%), Gaps = 21/235 (8%)

Query: 35   SQLAQLQEDLKKAKEQLNASDSWKRRAQ---QEAEEAKKQLSAMSARLEESQQQLLEITT 91
              L  + + +    E+ +  +  +       ++  + + Q+  +   L +  ++L     
Sbjct: 1896 HYLDFINQVVLLINEKRDQLEEEQLHLNIGLKKLRDTEAQVKDLQVSLAQKNRELDVKNE 1955

Query: 92   SEDTRVEELRQLSQDRDKAWQS---ELDAVQKQQSMDSAALGSAMNEIQRLKFQLEKVAE 148
              + +++++ Q  Q  +   +        +  +    +     A  ++++ +       E
Sbjct: 1956 QANQKLKQMVQDQQAAEIKQKDARELQVQLDVRNKEIAVQKVKAYADLEKAEPTGPLREE 2015

Query: 149  SEAAQTKHAESAYAEMQNLRIELTETLSLVEKLKNELSYCKESESQALEDVRKSQMQLET 208
             E  +   A     +   +   +T     +   K E +       Q   +  K + +++ 
Sbjct: 2016 VEQLE-NAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDR 2074

Query: 209  ANANLEMLRSDGIKATEAYNTLSLELELSKARVKSLEELVSKLQNDLLNSSNKLA 263
            + A L+ L S+  +  +                ++    +S +  D++ +S  LA
Sbjct: 2075 SIALLDNLNSERGRWEQQ--------------SENFNTQMSTVVGDVVLASAFLA 2115

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	578
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	98.58
2v71_A	189	Nuclear distribution protein NUDE-like 1; developm	97.44
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	97.4
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	97.32
2v71_A	189	Nuclear distribution protein NUDE-like 1; developm	97.11
3o0z_A	168	RHO-associated protein kinase 1; coiled-coil, tran	95.78
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	95.5
2ocy_A	154	RAB guanine nucleotide exchange factor SEC2; RAB,	95.14
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	94.66
3ol1_A	119	Vimentin; structural genomics, PSI-2, protein stru	94.45
2fxo_A	129	Myosin heavy chain, cardiac muscle beta isoform; c	94.36
3o0z_A	168	RHO-associated protein kinase 1; coiled-coil, tran	94.12
3ol1_A	119	Vimentin; structural genomics, PSI-2, protein stru	93.21
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	93.2
3swk_A	86	Vimentin; cytoskeleton, intermediate filament, alp	91.64
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	91.2
3u1c_A	101	Tropomyosin alpha-1 chain; anti-parallel coiled co	90.92
2v4h_A	110	NF-kappa-B essential modulator; transcription, met	90.88
3hnw_A	138	Uncharacterized protein; coiled-coil, structural g	90.3
3tnu_B	129	Keratin, type II cytoskeletal 5; coiled-coil, stru	90.15
3tnu_A	131	Keratin, type I cytoskeletal 14; coiled-coil, stru	89.62
3swk_A	86	Vimentin; cytoskeleton, intermediate filament, alp	88.47
3hnw_A	138	Uncharacterized protein; coiled-coil, structural g	88.16
2eqb_B	97	RAB guanine nucleotide exchange factor SEC2; coile	87.57
3u59_A	101	Tropomyosin beta chain; muscle contraction, actin,	87.51
2efr_A	155	General control protein GCN4 and tropomyosin 1 Al;	87.47
3tnu_A	131	Keratin, type I cytoskeletal 14; coiled-coil, stru	86.65
2jee_A	81	YIIU; FTSZ, septum, coiled-coil, cell division, ce	86.6
2eqb_B	97	RAB guanine nucleotide exchange factor SEC2; coile	86.26
2ocy_A	154	RAB guanine nucleotide exchange factor SEC2; RAB,	86.16
3tnu_B	129	Keratin, type II cytoskeletal 5; coiled-coil, stru	85.9
2e7s_A	135	RAB guanine nucleotide exchange factor SEC2; coile	85.89
1ic2_A	81	Tropomyosin alpha chain, skeletal muscle; alpha-he	85.84
2v4h_A	110	NF-kappa-B essential modulator; transcription, met	85.74
2efr_A	155	General control protein GCN4 and tropomyosin 1 Al;	85.09
2e7s_A	135	RAB guanine nucleotide exchange factor SEC2; coile	84.96
3ghg_A	562	Fibrinogen alpha chain; triple-stranded coiled coi	84.86
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	84.02
2jee_A	81	YIIU; FTSZ, septum, coiled-coil, cell division, ce	82.3
3cve_A	72	Homer protein homolog 1; coiled coil, alternative	82.02
3cvf_A	79	Homer-3, homer protein homolog 3; coiled coil, alt	81.91
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	81.79
3i00_A	120	HIP-I, huntingtin-interacting protein 1; transcrip	81.19

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A

Probab=98.58  E-value=1.3e-07  Score=113.77  Aligned_cols=38  Identities=21%  Similarity=0.257  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHH
Q 008082          391 KLAVELNKLEAEVVEFKASILDKETELMSLTEQNGMLK  428 (578)
Q Consensus       391 El~k~~kkle~e~~eLk~~L~e~E~~lq~~~~E~~~lk  428 (578)
                      ++...++.++.++..++..+.+.+..+..+..+...+.
T Consensus      1057 ele~~~~~le~el~~l~~el~el~~el~~le~~l~~le 1094 (1184)
T 1i84_S         1057 ELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKE 1094 (1184)
T ss_dssp             --------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444445555555555444444444433333333

>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}

Probab=97.44  E-value=0.017  Score=54.59  Aligned_cols=107  Identities=19%  Similarity=0.183  Sum_probs=54.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccc
Q 008082          189 KESESQALEDVRKSQMQLETANANLEMLRSDGIKATEAYNTLSLELELSKARVKSLEELVSKLQNDLLNSSNKLAESMGD  268 (578)
Q Consensus       189 e~~~s~l~~~~~el~~qLEea~~~le~l~~e~~~l~~~~~~l~~eLe~~~~e~~~Le~ei~kL~~el~~~~~k~~~~e~~  268 (578)
                      +..+.-|...+..+..++..++.++......-..|+.   .+..+|+.+...++.|...+..|..++..|+.|+..    
T Consensus         9 ~ee~~ywk~~~~~~~q~~~~le~El~EFqesSrELE~---ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~----   81 (189)
T 2v71_A            9 KEETAYWKELSMKYKQSFQEARDELVEFQEGSRELEA---ELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEH----   81 (189)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence            3445555555555555555555555544444333332   233355666666677777777777777777766531    


Q ss_pred             ccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008082          269 VHLSQKNGENEEIDKLKGELDLARNELRQLRSALDASE  306 (578)
Q Consensus       269 ~~~~~~~e~~eei~eL~~el~~le~EieeL~s~LE~aE  306 (578)
                          ...+....+..|+.++..+......+...|.+.|
T Consensus        82 ----~~~e~~~~~~~Lq~el~~l~~~~~~l~~~ireLE  115 (189)
T 2v71_A           82 ----QYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELE  115 (189)
T ss_dssp             ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                1111222244444444444444444444444333

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=97.40  E-value=0.039  Score=54.80  Aligned_cols=67  Identities=12%  Similarity=0.136  Sum_probs=27.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008082          192 ESQALEDVRKSQMQLETANANLEMLRSDGIKATEAYNTLSLELELSKARVKSLEELVSKLQNDLLNS  258 (578)
Q Consensus       192 ~s~l~~~~~el~~qLEea~~~le~l~~e~~~l~~~~~~l~~eLe~~~~e~~~Le~ei~kL~~el~~~  258 (578)
                      +..+......+...+.++...+..+.+.+..+...+..+..++.....++..+...+.+.+..+..+
T Consensus        20 i~~l~~~~~~lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v   86 (256)
T 3na7_A           20 IDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEI   86 (256)
T ss_dssp             HHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence            3333333333333444444444444444444444444444444444444444444444444444433

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=97.32  E-value=0.079  Score=52.57  Aligned_cols=29  Identities=24%  Similarity=0.454  Sum_probs=12.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008082          226 AYNTLSLELELSKARVKSLEELVSKLQND  254 (578)
Q Consensus       226 ~~~~l~~eLe~~~~e~~~Le~ei~kL~~e  254 (578)
                      .|..+..+++....++..++..|..+...
T Consensus        91 E~~aL~kEie~~~~~i~~lE~eile~~e~  119 (256)
T 3na7_A           91 ELRSLNIEEDIAKERSNQANREIENLQNE  119 (256)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444444444444444443333

>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}

Probab=97.11  E-value=0.11  Score=48.98  Aligned_cols=94  Identities=20%  Similarity=0.149  Sum_probs=58.5

Q ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhhhhhhhhcccccccccccc
Q 008082          201 KSQMQLETANANLEMLRSDGIKATEAYNTLSLELELSKAR----VKSLEELVSKLQNDLLNSSNKLAESMGDVHLSQKNG  276 (578)
Q Consensus       201 el~~qLEea~~~le~l~~e~~~l~~~~~~l~~eLe~~~~e----~~~Le~ei~kL~~el~~~~~k~~~~e~~~~~~~~~e  276 (578)
                      ++..+|+.+...+..|...+..+...+..+...+..+..+    +..|+.+|..+......+..                
T Consensus        46 ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~el~~l~~~~~~l~~----------------  109 (189)
T 2v71_A           46 ELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHK----------------  109 (189)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------
Confidence            3455555666666666666666666666666555555544    55666666666655544422                


Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008082          277 ENEEIDKLKGELDLARNELRQLRSALDASETRYQEEY  313 (578)
Q Consensus       277 ~~eei~eL~~el~~le~EieeL~s~LE~aE~~lqeE~  313 (578)
                         .|.+|+-.-+.++.....+.+.+++.+++|+..+
T Consensus       110 ---~ireLEq~NDdlEr~~R~~~~SleD~e~kln~ai  143 (189)
T 2v71_A          110 ---YVRELEQANDDLERAKRATIMSLEDFEQRLNQAI  143 (189)
T ss_dssp             ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ---HHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHH
Confidence               2666666667777777777788888887777554

>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}

Probab=95.78  E-value=1.2  Score=41.05  Aligned_cols=108  Identities=13%  Similarity=0.059  Sum_probs=56.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008082          137 QRLKFQLEKVAESEAAQTKHAESAYAEMQNLRIELTETLSLVEKLKNELSYCKESESQALEDVRKSQMQLETANANLEML  216 (578)
Q Consensus       137 ~klr~qle~~~~ak~~~~k~~~~le~el~eL~~el~e~~~eie~l~~~l~e~e~~~s~l~~~~~el~~qLEea~~~le~l  216 (578)
                      .++|-+.-.+..+.......+..+.+.+..|....+.+..++-.|..++..-.....+....+.+++.++..+..++..+
T Consensus        30 ~rlkK~~tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~  109 (168)
T 3o0z_A           30 VRLRKSHTEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHL  109 (168)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333333334444445555555555555555666666666666666666666666666666666555555555


Q ss_pred             HhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 008082          217 RSDGIKATEAYNTLSLELELSKARVKSL  244 (578)
Q Consensus       217 ~~e~~~l~~~~~~l~~eLe~~~~e~~~L  244 (578)
                      .....++......+...+..+..+..++
T Consensus       110 k~~~~k~~~e~r~L~Ekl~~lEKe~a~~  137 (168)
T 3o0z_A          110 KHNLEKVEGERKEAQDMLNHSEKEKNNL  137 (168)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            5555555444444444444444444333

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=95.50  E-value=4.3  Score=53.24  Aligned_cols=85  Identities=12%  Similarity=0.094  Sum_probs=70.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 008082          156 HAESAYAEMQNLRIELTETLSLVEKLKNELSYCKESESQALEDVRKSQMQLETANANLEMLRSDGIKATEAYNTLSLELE  235 (578)
Q Consensus       156 ~~~~le~el~eL~~el~e~~~eie~l~~~l~e~e~~~s~l~~~~~el~~qLEea~~~le~l~~e~~~l~~~~~~l~~eLe  235 (578)
                      ....+...+..++.+|.++...|..++.++..+-.....++..++.++..|+.|.+-+..|..+...|......+..++.
T Consensus      2022 ~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~RW~~~~~~l~~~~~ 2101 (3245)
T 3vkg_A         2022 AANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNLNSERGRWEQQSENFNTQMS 2101 (3245)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHH
Confidence            34456667777778888888888888888888888888899999999999999999999999999999888888887776


Q ss_pred             HHHHH
Q 008082          236 LSKAR  240 (578)
Q Consensus       236 ~~~~e  240 (578)
                      .+-..
T Consensus      2102 ~L~GD 2106 (3245)
T 3vkg_A         2102 TVVGD 2106 (3245)
T ss_dssp             HHHHH
T ss_pred             hccHH
Confidence            65543

>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=95.14  E-value=1.8  Score=39.27  Aligned_cols=49  Identities=24%  Similarity=0.154  Sum_probs=38.3

Q ss_pred             ccccchHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHH
Q 008082          384 ESNQRDSKLAVELNKLEAEVVEFKASILDKETELMSLTEQNGMLKMEIE  432 (578)
Q Consensus       384 ~~~k~~~El~k~~kkle~e~~eLk~~L~e~E~~lq~~~~E~~~lk~~i~  432 (578)
                      .+|+.+....+..-.++..+..|+.++.|++.-|.....+...|+.-+.
T Consensus        98 EAN~MVa~ar~~~~~~e~r~~~L~~ql~e~~~~l~~lq~ql~~LK~v~~  146 (154)
T 2ocy_A           98 EANNMVADARKEKYAIEILNKRLTEQLREKDTLLDTLTLQLKNLKKVMH  146 (154)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455567777777778888888999999999999998888888876554

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=94.66  E-value=11  Score=49.51  Aligned_cols=33  Identities=15%  Similarity=0.273  Sum_probs=19.7

Q ss_pred             HHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHH
Q 008082          113 SELDAVQKQQSMDSAALGSAMNEIQRLKFQLEK  145 (578)
Q Consensus       113 ~ele~~r~~~~~~~~~L~~~~~el~klr~qle~  145 (578)
                      .++...+..+..-+.-|.++..+|..++.+|..
T Consensus      1913 ~el~~~~~rl~~GL~KL~et~~~V~~l~~~L~~ 1945 (3245)
T 3vkg_A         1913 DQLEEEQLHLNIGLKKLRDTEAQVKDLQVSLAQ 1945 (3245)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344445555666666666666666666666653

>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A

Probab=94.36  E-value=2.5  Score=37.21  Aligned_cols=85  Identities=21%  Similarity=0.180  Sum_probs=40.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHH
Q 008082          130 GSAMNEIQRLKFQLEKVAESEAAQTKHAESAYAEMQNLRIELTETLSLVEKLKNELSYCKESESQALEDVRKSQMQLETA  209 (578)
Q Consensus       130 ~~~~~el~klr~qle~~~~ak~~~~k~~~~le~el~eL~~el~e~~~eie~l~~~l~e~e~~~s~l~~~~~el~~qLEea  209 (578)
                      ...-.++.+++..+...-       +.+..++.....+..+...+...+..-+..+.+++....++.....++...|.++
T Consensus        16 ~~~~eel~~lke~l~k~e-------~~r~ele~~~~~l~~Ek~~L~~qL~~E~~~l~e~EE~~~~L~~~k~eLe~~l~el   88 (129)
T 2fxo_A           16 ASMKEEFTRLKEALEKSE-------ARRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQLIKNKIQLEAKVKEM   88 (129)
T ss_dssp             HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence            333445555555554333       3333344444444444444444444445555555555555555555555555555


Q ss_pred             HHHHHHHHhhhH
Q 008082          210 NANLEMLRSDGI  221 (578)
Q Consensus       210 ~~~le~l~~e~~  221 (578)
                      ...++.......
T Consensus        89 ~~rleeeee~~~  100 (129)
T 2fxo_A           89 NKRLEDEEEMNA  100 (129)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            544444333333

>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}

Probab=94.12  E-value=3.5  Score=37.91  Aligned_cols=26  Identities=23%  Similarity=0.479  Sum_probs=13.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008082          281 IDKLKGELDLARNELRQLRSALDASE  306 (578)
Q Consensus       281 i~eL~~el~~le~EieeL~s~LE~aE  306 (578)
                      +.+|+..+..+..++..++.++..+.
T Consensus        92 ~~elq~ri~~L~~El~~~k~~~~k~~  117 (168)
T 3o0z_A           92 IGDLQARITSLQEEVKHLKHNLEKVE  117 (168)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44555555555555555544444433

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=93.20  E-value=2.5  Score=50.26  Aligned_cols=21  Identities=5%  Similarity=0.044  Sum_probs=9.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q 008082          286 GELDLARNELRQLRSALDASE  306 (578)
Q Consensus       286 ~el~~le~EieeL~s~LE~aE  306 (578)
                      ..+..++.+...|+..+++.+
T Consensus      1023 ~kv~~L~~e~~~L~qq~~~l~ 1043 (1080)
T 2dfs_A         1023 QLVSELKEQNTLLKTEKEELN 1043 (1080)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444444444444

>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}

Probab=91.64  E-value=2  Score=35.25  Aligned_cols=81  Identities=10%  Similarity=0.117  Sum_probs=52.6

Q ss_pred             HHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008082          178 VEKLKNELSYCKESESQALEDVRKSQMQLETANANLEMLRSDGIKATEAYNTLSLELELSKARVKSLEELVSKLQNDLLN  257 (578)
Q Consensus       178 ie~l~~~l~e~e~~~s~l~~~~~el~~qLEea~~~le~l~~e~~~l~~~~~~l~~eLe~~~~e~~~Le~ei~kL~~el~~  257 (578)
                      |.+|+.++..+....+++...+..++..+++.+...+.--.....++..+..+...++..--....|+..|..|..+|.=
T Consensus         2 i~eLr~qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~eEl~f   81 (86)
T 3swk_A            2 MRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEIAF   81 (86)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45566666666666666666666666666666666665555556666666666666666555556677777777766654


Q ss_pred             h
Q 008082          258 S  258 (578)
Q Consensus       258 ~  258 (578)
                      +
T Consensus        82 L   82 (86)
T 3swk_A           82 L   82 (86)
T ss_dssp             H
T ss_pred             H
Confidence            4

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=91.20  E-value=6.8  Score=46.48  Aligned_cols=20  Identities=10%  Similarity=0.155  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q 008082          194 QALEDVRKSQMQLETANANL  213 (578)
Q Consensus       194 ~l~~~~~el~~qLEea~~~l  213 (578)
                      .+...+.+++.+|++.....
T Consensus       925 ~LE~kl~eLq~rL~~~e~~n  944 (1080)
T 2dfs_A          925 GLENKIMQLQRKIDEQNKEY  944 (1080)
T ss_dssp             --------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            33333334444444333333

>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A

Probab=90.92  E-value=6.5  Score=33.07  Aligned_cols=17  Identities=12%  Similarity=0.157  Sum_probs=6.4

Q ss_pred             HHHHHHHHHHHHHhHhH
Q 008082          173 ETLSLVEKLKNELSYCK  189 (578)
Q Consensus       173 e~~~eie~l~~~l~e~e  189 (578)
                      ....+|..|+.++.-++
T Consensus        41 ~~E~Ei~sL~kk~~~lE   57 (101)
T 3u1c_A           41 QLEDDIVQLEKQLRVTE   57 (101)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HhHHHHHHHHHHHHHHH
Confidence            33333333444333333

>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}

Probab=90.88  E-value=5.6  Score=33.82  Aligned_cols=78  Identities=17%  Similarity=0.210  Sum_probs=35.4

Q ss_pred             HHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008082          178 VEKLKNELSYCKESESQALEDVRKSQMQLETANA---NLEMLRSDGIKATEAYNTLSLELELSKARVKSLEELVSKLQND  254 (578)
Q Consensus       178 ie~l~~~l~e~e~~~s~l~~~~~el~~qLEea~~---~le~l~~e~~~l~~~~~~l~~eLe~~~~e~~~Le~ei~kL~~e  254 (578)
                      |..|+.++..++......+..+.++...+.....   ++.-|...+.-+...+..-...-+.+..++..|..++..|..+
T Consensus        26 i~~L~~~L~~AEeaL~~Kq~~idelk~ei~q~~~~lE~I~vLkaQv~IY~~DF~aERadREkl~~eKe~L~~ql~~Lq~q  105 (110)
T 2v4h_A           26 LEDLRQQLQQAEEALVAKQELIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQRE  105 (110)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHhHHHHHHHHHHHHHHH
Confidence            3344444444444444444444444443333333   3344444444444444444444444444455555555555544


Q ss_pred             H
Q 008082          255 L  255 (578)
Q Consensus       255 l  255 (578)
                      +
T Consensus       106 ~  106 (110)
T 2v4h_A          106 F  106 (110)
T ss_dssp             H
T ss_pred             H
Confidence            4

>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}

Probab=90.30  E-value=2.6  Score=37.71  Aligned_cols=58  Identities=16%  Similarity=0.228  Sum_probs=30.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008082          199 VRKSQMQLETANANLEMLRSDGIKATEAYNTLSLELELSKARVKSLEELVSKLQNDLL  256 (578)
Q Consensus       199 ~~el~~qLEea~~~le~l~~e~~~l~~~~~~l~~eLe~~~~e~~~Le~ei~kL~~el~  256 (578)
                      +..+..++++...++..|..++..+...++.+..+++.++.++..|+..+.+|++.+.
T Consensus        77 ~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~~  134 (138)
T 3hnw_A           77 ADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLETELN  134 (138)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444455555555555555555555555555555555555555555555443

>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}

Probab=90.15  E-value=6.7  Score=34.39  Aligned_cols=30  Identities=3%  Similarity=0.146  Sum_probs=12.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHhHHHHH
Q 008082          164 MQNLRIELTETLSLVEKLKNELSYCKESES  193 (578)
Q Consensus       164 l~eL~~el~e~~~eie~l~~~l~e~e~~~s  193 (578)
                      +.+++..+..+..+|+.++.+...++..+.
T Consensus        38 i~elrr~iq~L~~el~~l~~~~~~LE~~l~   67 (129)
T 3tnu_B           38 ISEMNRMIQRLRAEIDNVKKQCANLQNAIA   67 (129)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence            333444444444444444444444444433

>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}

Probab=89.62  E-value=5.7  Score=34.95  Aligned_cols=32  Identities=13%  Similarity=0.067  Sum_probs=13.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHH
Q 008082          163 EMQNLRIELTETLSLVEKLKNELSYCKESESQ  194 (578)
Q Consensus       163 el~eL~~el~e~~~eie~l~~~l~e~e~~~s~  194 (578)
                      ++.+++..+..+..+|+.++.+...++..+..
T Consensus        39 Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e   70 (131)
T 3tnu_A           39 EISELRRTMQNLEIELQSQLSMKASLENSLEE   70 (131)
T ss_dssp             --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            33444444444444444444444444444433

>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}

Probab=88.47  E-value=6.5  Score=32.11  Aligned_cols=10  Identities=20%  Similarity=0.531  Sum_probs=4.5

Q ss_pred             HHHHHHHHHH
Q 008082          137 QRLKFQLEKV  146 (578)
Q Consensus       137 ~klr~qle~~  146 (578)
                      ..||.+++.+
T Consensus         3 ~eLr~qi~~l   12 (86)
T 3swk_A            3 RELRRQVDQL   12 (86)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            3444444443

>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}

Probab=88.16  E-value=6.9  Score=34.88  Aligned_cols=29  Identities=7%  Similarity=0.103  Sum_probs=12.5

Q ss_pred             HHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
Q 008082          129 LGSAMNEIQRL--KFQLEKVAESEAAQTKHA  157 (578)
Q Consensus       129 L~~~~~el~kl--r~qle~~~~ak~~~~k~~  157 (578)
                      ++..+.+|...  -..+....-+-..+++-+
T Consensus        37 vd~km~ei~~~~~~~~l~~~r~aVLaALNia   67 (138)
T 3hnw_A           37 INNKITEFNKEESYRRMSAELRTDMMYLNIA   67 (138)
T ss_dssp             HHHHHHHHTTCHHHHTSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccCCCCCCHHHHHHHHHHHHH
Confidence            44444444422  333344444445555533

>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=87.57  E-value=11  Score=31.34  Aligned_cols=53  Identities=17%  Similarity=0.279  Sum_probs=26.5

Q ss_pred             HHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008082          115 LDAVQKQQSMDSAALGSAMNEIQRLKFQLEKVAESEAAQTKHAESAYAEMQNL  167 (578)
Q Consensus       115 le~~r~~~~~~~~~L~~~~~el~klr~qle~~~~ak~~~~k~~~~le~el~eL  167 (578)
                      ++.+|.++..--..+...-.++.+|...+..-...+..+.+....++.++.+|
T Consensus         7 ~e~lre~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeL   59 (97)
T 2eqb_B            7 YNQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDL   59 (97)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444344444555566666666655555555555444444444444

>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}

Probab=87.51  E-value=12  Score=31.40  Aligned_cols=7  Identities=29%  Similarity=0.311  Sum_probs=2.5

Q ss_pred             HHHHHHH
Q 008082          246 ELVSKLQ  252 (578)
Q Consensus       246 ~ei~kL~  252 (578)
                      .+|..|+
T Consensus        86 ~evasLn   92 (101)
T 3u59_A           86 AEVASLN   92 (101)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            3333333

>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A

Probab=87.47  E-value=16  Score=33.08  Aligned_cols=61  Identities=18%  Similarity=0.238  Sum_probs=25.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008082          198 DVRKSQMQLETANANLEMLRSDGIKATEAYNTLSLELELSKARVKSLEELVSKLQNDLLNS  258 (578)
Q Consensus       198 ~~~el~~qLEea~~~le~l~~e~~~l~~~~~~l~~eLe~~~~e~~~Le~ei~kL~~el~~~  258 (578)
                      .+..+..+|.++....+.-...+.+++..++.+...|...+.....+..++...-.++..+
T Consensus        78 qIk~L~~kLKEAE~RAE~AERsv~kLEk~id~lEd~L~~~Kek~~~i~~eLd~tl~el~~~  138 (155)
T 2efr_A           78 EIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEEMKQLEDKVEEL  138 (155)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            3333344444444444444444444444444444444444444444444444443444333

>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}

Probab=86.65  E-value=16  Score=32.06  Aligned_cols=55  Identities=15%  Similarity=0.153  Sum_probs=16.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008082          199 VRKSQMQLETANANLEMLRSDGIKATEAYNTLSLELELSKARVKSLEELVSKLQN  253 (578)
Q Consensus       199 ~~el~~qLEea~~~le~l~~e~~~l~~~~~~l~~eLe~~~~e~~~Le~ei~kL~~  253 (578)
                      +.+++.....-...+.....++..+...+.++..+++.++.....|+..|..++.
T Consensus        19 ~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~   73 (131)
T 3tnu_A           19 TEELNREVATNSELVQSGKSEISELRRTMQNLEIELQSQLSMKASLENSLEETKG   73 (131)
T ss_dssp             ----------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            3333333333333344444444555555555555555555444444444444443

>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}

Probab=86.60  E-value=8.1  Score=31.15  Aligned_cols=53  Identities=17%  Similarity=0.226  Sum_probs=20.3

Q ss_pred             HHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 008082          170 ELTETLSLVEKLKNELSYCKESESQALEDVRKSQMQLETANANLEMLRSDGIK  222 (578)
Q Consensus       170 el~e~~~eie~l~~~l~e~e~~~s~l~~~~~el~~qLEea~~~le~l~~e~~~  222 (578)
                      ++..+..+|.-|+..+++++.....+.....++....+.+..++..|..+...
T Consensus        14 KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~   66 (81)
T 2jee_A           14 KVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNG   66 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence            33333333444444444444444443333333333333333333333333333

>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=86.26  E-value=10  Score=31.63  Aligned_cols=30  Identities=13%  Similarity=0.109  Sum_probs=17.4

Q ss_pred             cccchHHHHHHHHHHHHHHHHHHHHhHhHH
Q 008082          385 SNQRDSKLAVELNKLEAEVVEFKASILDKE  414 (578)
Q Consensus       385 ~~k~~~El~k~~kkle~e~~eLk~~L~e~E  414 (578)
                      +|+.+....+..-.++..+..|+.+|.|++
T Consensus        67 AN~MVa~ar~e~~~~e~kn~~L~~qL~d~d   96 (97)
T 2eqb_B           67 ANNMVADARKEKYAIEILNKRLTEQLREKD   96 (97)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            344455555555556666666666665543

>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=86.16  E-value=19  Score=32.56  Aligned_cols=47  Identities=15%  Similarity=0.150  Sum_probs=20.4

Q ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008082          207 ETANANLEMLRSDGIKATEAYNTLSLELELSKARVKSLEELVSKLQN  253 (578)
Q Consensus       207 Eea~~~le~l~~e~~~l~~~~~~l~~eLe~~~~e~~~Le~ei~kL~~  253 (578)
                      ++|+.-+..-+.....++.....+...+.+...-+..++.++..|+.
T Consensus        97 eEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~~~~l~~lq~ql~~LK~  143 (154)
T 2ocy_A           97 DEANNMVADARKEKYAIEILNKRLTEQLREKDTLLDTLTLQLKNLKK  143 (154)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333333444444444444444444444444455554444

>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}

Probab=85.90  E-value=17  Score=31.72  Aligned_cols=40  Identities=13%  Similarity=0.197  Sum_probs=17.0

Q ss_pred             HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008082          213 LEMLRSDGIKATEAYNTLSLELELSKARVKSLEELVSKLQ  252 (578)
Q Consensus       213 le~l~~e~~~l~~~~~~l~~eLe~~~~e~~~Le~ei~kL~  252 (578)
                      +.....++..+...+.++..+++.++.....|+..|..++
T Consensus        31 l~~~k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e   70 (129)
T 3tnu_B           31 LRNTKHEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAE   70 (129)
T ss_dssp             ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            3333444444444444444444444444444444444433

>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=85.89  E-value=1  Score=39.98  Aligned_cols=48  Identities=23%  Similarity=0.152  Sum_probs=27.5

Q ss_pred             ccccchHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHH
Q 008082          384 ESNQRDSKLAVELNKLEAEVVEFKASILDKETELMSLTEQNGMLKMEI  431 (578)
Q Consensus       384 ~~~k~~~El~k~~kkle~e~~eLk~~L~e~E~~lq~~~~E~~~lk~~i  431 (578)
                      .+|+.+....+..-.++..+..|+.++.|++.-|.....+...|+.-|
T Consensus        86 EAN~MVa~ar~~~~~~e~r~~~L~~ql~e~e~ll~~lq~QL~~LK~v~  133 (135)
T 2e7s_A           86 EANNLVADARMEKYAIEILNKRLTEQLREKDMLLDTLTLQLKNLKKVM  133 (135)
T ss_dssp             HHHHHHHHTTHHHHHHHHHHHHHHHTTTHHHHCC--------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            667777777777777888888888888888888888877777666433

>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1

Probab=85.84  E-value=8.8  Score=30.79  Aligned_cols=52  Identities=13%  Similarity=0.150  Sum_probs=19.8

Q ss_pred             hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 008082          186 SYCKESESQALEDVRKSQMQLETANANLEMLRSDGIKATEAYNTLSLELELS  237 (578)
Q Consensus       186 ~e~e~~~s~l~~~~~el~~qLEea~~~le~l~~e~~~l~~~~~~l~~eLe~~  237 (578)
                      ..++.....+...+..+..++..+.........++..+...+..+..+++.+
T Consensus         9 ~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~   60 (81)
T 1ic2_A            9 QMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKY   60 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333444444444433333333333333333333333333

>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}

Probab=85.74  E-value=13  Score=31.61  Aligned_cols=77  Identities=19%  Similarity=0.164  Sum_probs=40.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 008082          163 EMQNLRIELTETLSLVEKLKNELSYCKESESQALE---DVRKSQMQLETANANLEMLRSDGIKATEAYNTLSLELELSKA  239 (578)
Q Consensus       163 el~eL~~el~e~~~eie~l~~~l~e~e~~~s~l~~---~~~el~~qLEea~~~le~l~~e~~~l~~~~~~l~~eLe~~~~  239 (578)
                      ++..|...|..++..+......|..++..+.+...   .+.-+..|++--.....+-+....++......|..++..+..
T Consensus        25 ei~~L~~~L~~AEeaL~~Kq~~idelk~ei~q~~~~lE~I~vLkaQv~IY~~DF~aERadREkl~~eKe~L~~ql~~Lq~  104 (110)
T 2v4h_A           25 QLEDLRQQLQQAEEALVAKQELIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQR  104 (110)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHhHHHHHHHHHHHHHH
Confidence            45566666666666666666666666666666555   333444455544444444444444444444444444443333

>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A

Probab=85.09  E-value=22  Score=32.25  Aligned_cols=9  Identities=33%  Similarity=0.612  Sum_probs=3.2

Q ss_pred             HHHHHHHHH
Q 008082          244 LEELVSKLQ  252 (578)
Q Consensus       244 Le~ei~kL~  252 (578)
                      |+..|..|.
T Consensus       103 LEk~id~lE  111 (155)
T 2efr_A          103 LEKSIDDLE  111 (155)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            333333333

>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=84.96  E-value=2.9  Score=37.08  Aligned_cols=86  Identities=17%  Similarity=0.193  Sum_probs=35.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHH
Q 008082          129 LGSAMNEIQRLKFQLEKVAESEAAQTKHAESAYAEMQNLRIELTETLSLVEKLKNELSYCKESESQALEDVRKSQMQLET  208 (578)
Q Consensus       129 L~~~~~el~klr~qle~~~~ak~~~~k~~~~le~el~eL~~el~e~~~eie~l~~~l~e~e~~~s~l~~~~~el~~qLEe  208 (578)
                      +.....++.+|...+..-...+..+.+....++.++.+|..-      .-+..+.-+.++......+...+..+..++.+
T Consensus        41 l~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElE~LTas------LFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e  114 (135)
T 2e7s_A           41 LSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTAS------LFDEANNLVADARMEKYAIEILNKRLTEQLRE  114 (135)
T ss_dssp             TTTHHHHHHTHHHHHHHTTSHHHHHHHTTHHHHHHHHHHHHH------HHHHHHHHHHHTTHHHHHHHHHHHHHHHTTTH
T ss_pred             HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444555566655555555555555444444444444322      12223333344433344444444444444444


Q ss_pred             HHHHHHHHHhhh
Q 008082          209 ANANLEMLRSDG  220 (578)
Q Consensus       209 a~~~le~l~~e~  220 (578)
                      ...-++.+...+
T Consensus       115 ~e~ll~~lq~QL  126 (135)
T 2e7s_A          115 KDMLLDTLTLQL  126 (135)
T ss_dssp             HHHCC-------
T ss_pred             HHHHHHHHHHHH
Confidence            444444443333

>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*

Probab=84.86  E-value=7.4  Score=41.77  Aligned_cols=22  Identities=23%  Similarity=0.277  Sum_probs=12.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q 008082          134 NEIQRLKFQLEKVAESEAAQTK  155 (578)
Q Consensus       134 ~el~klr~qle~~~~ak~~~~k  155 (578)
                      .-|.+||.+++...+....+..
T Consensus        64 krINELKnqLEdlsKnsKdseq   85 (562)
T 3ghg_A           64 NRINKLKNSLFEYQKNNKDSHS   85 (562)
T ss_dssp             HHHHHHHHHHTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhchhHHH
Confidence            3456666666665555555544

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=84.02  E-value=20  Score=39.08  Aligned_cols=23  Identities=26%  Similarity=0.375  Sum_probs=9.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Q 008082          281 IDKLKGELDLARNELRQLRSALD  303 (578)
Q Consensus       281 i~eL~~el~~le~EieeL~s~LE  303 (578)
                      +.++...+..++.++......+.
T Consensus       458 ~~~~~~~i~~l~~~~~~~~~~l~  480 (597)
T 3oja_B          458 VNELRAEVQQLTNEQIQQEQLLQ  480 (597)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444444444444444433333

>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}

Probab=82.30  E-value=18  Score=29.14  Aligned_cols=62  Identities=18%  Similarity=0.198  Sum_probs=33.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 008082          199 VRKSQMQLETANANLEMLRSDGIKATEAYNTLSLELELSKARVKSLEELVSKLQNDLLNSSN  260 (578)
Q Consensus       199 ~~el~~qLEea~~~le~l~~e~~~l~~~~~~l~~eLe~~~~e~~~Le~ei~kL~~el~~~~~  260 (578)
                      ++.+...+..+=.+|.-|+-++..++.....+..+.++++.....|..++..|..+...|..
T Consensus         8 leqLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~   69 (81)
T 2jee_A            8 FEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQE   69 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence            34444445555555555555555555555555555555555555566666666666665543

>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}

Probab=82.02  E-value=15  Score=28.87  Aligned_cols=63  Identities=13%  Similarity=0.121  Sum_probs=43.4

Q ss_pred             HHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 008082          180 KLKNELSYCKESESQALEDVRKSQMQLETANANLEMLRSDGIKATEAYNTLSLELELSKARVK  242 (578)
Q Consensus       180 ~l~~~l~e~e~~~s~l~~~~~el~~qLEea~~~le~l~~e~~~l~~~~~~l~~eLe~~~~e~~  242 (578)
                      .+..++.+++.....|...|..++.+|++++..-+.+..++..+...++.-..+|.+++..+.
T Consensus         4 ~~~~kLq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~e~Ld~KI~eL~elrq~La   66 (72)
T 3cve_A            4 NSHMKLQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLLEILDGKIFELTELRDNLA   66 (72)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            455667777777777778888888888888877777777776666666655555555555443

>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}

Probab=81.91  E-value=9  Score=30.77  Aligned_cols=66  Identities=17%  Similarity=0.161  Sum_probs=43.8

Q ss_pred             HHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 008082          177 LVEKLKNELSYCKESESQALEDVRKSQMQLETANANLEMLRSDGIKATEAYNTLSLELELSKARVK  242 (578)
Q Consensus       177 eie~l~~~l~e~e~~~s~l~~~~~el~~qLEea~~~le~l~~e~~~l~~~~~~l~~eLe~~~~e~~  242 (578)
                      +.+.+..++.+++.....|...|..++.+|++++..-+.+..++..+...++.-..+|.+++..+.
T Consensus         7 e~e~~~~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~Ld~KI~eL~elRqgLa   72 (79)
T 3cvf_A            7 EREETQQKVQDLETRNAELEHQLRAMERSLEEARAERERARAEVGRAAQLLDVSLFELSELREGLA   72 (79)
T ss_dssp             ---CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            344556667777777777777888888888888877777777776666666665555555555443

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=81.79  E-value=12  Score=40.83  Aligned_cols=19  Identities=11%  Similarity=0.046  Sum_probs=6.8

Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q 008082          233 ELELSKARVKSLEELVSKL  251 (578)
Q Consensus       233 eLe~~~~e~~~Le~ei~kL  251 (578)
                      .+.+++.++..+..+++.+
T Consensus       559 ~~~~l~~e~~~~~~~~~~l  577 (597)
T 3oja_B          559 KQAELRQETSLKRQKVKQL  577 (597)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333333

>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A

Probab=81.19  E-value=9.1  Score=33.29  Aligned_cols=96  Identities=20%  Similarity=0.248  Sum_probs=26.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHH---HHHHHHHHHHH
Q 008082          132 AMNEIQRLKFQLEKVAESEAAQTKHAESAYAEMQNLRIELTETLSLVEKLKNELSYCKESESQALE---DVRKSQMQLET  208 (578)
Q Consensus       132 ~~~el~klr~qle~~~~ak~~~~k~~~~le~el~eL~~el~e~~~eie~l~~~l~e~e~~~s~l~~---~~~el~~qLEe  208 (578)
                      ..-++..++..++.+   +..+-.-+..+...+..|..++++...+...+...++.+......+..   ....++..+.+
T Consensus        20 Lkreie~lk~ele~l---~~E~q~~v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~~l~~~~~~~~~~q~~~~e   96 (120)
T 3i00_A           20 LYREISGLKAQLENM---KTESQRVVLQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELDELRRQREDTEKAQRSLSE   96 (120)
T ss_dssp             HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC-----------
T ss_pred             HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence            334555555555544   333333334455555555555554444333333333333322222211   11222333444


Q ss_pred             HHHHHHHHHhhhHHHHHHHHHH
Q 008082          209 ANANLEMLRSDGIKATEAYNTL  230 (578)
Q Consensus       209 a~~~le~l~~e~~~l~~~~~~l  230 (578)
                      +........-.+.+|+..|..+
T Consensus        97 ~E~kAqa~Eerf~KLKe~yteL  118 (120)
T 3i00_A           97 IERKAQANEQRYSKLKEKYSEL  118 (120)
T ss_dssp             ----------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            4444444455555555555443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00