Citrus Sinensis ID: 008094
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 578 | 2.2.26 [Sep-21-2011] | |||||||
| Q9C5D6 | 569 | Cationic amino acid trans | yes | no | 0.946 | 0.961 | 0.715 | 0.0 | |
| Q8W4K3 | 600 | Cationic amino acid trans | no | no | 0.889 | 0.856 | 0.335 | 7e-85 | |
| Q797A7 | 461 | Uncharacterized amino aci | yes | no | 0.688 | 0.863 | 0.426 | 1e-77 | |
| P30823 | 624 | High affinity cationic am | yes | no | 0.868 | 0.804 | 0.326 | 1e-71 | |
| Q09143 | 622 | High affinity cationic am | yes | no | 0.868 | 0.807 | 0.327 | 2e-71 | |
| Q9ASS7 | 635 | Cationic amino acid trans | no | no | 0.688 | 0.626 | 0.379 | 2e-70 | |
| B3TP03 | 654 | Low affinity cationic ami | no | no | 0.861 | 0.761 | 0.321 | 7e-68 | |
| P30825 | 629 | High affinity cationic am | yes | no | 0.884 | 0.812 | 0.325 | 5e-67 | |
| Q84MA5 | 594 | Cationic amino acid trans | no | no | 0.892 | 0.868 | 0.296 | 1e-66 | |
| Q8GYB4 | 609 | Cationic amino acid trans | no | no | 0.652 | 0.619 | 0.375 | 4e-66 |
| >sp|Q9C5D6|CAAT9_ARATH Cationic amino acid transporter 9, chloroplastic OS=Arabidopsis thaliana GN=CAT9 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 767 bits (1981), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 398/556 (71%), Positives = 478/556 (85%), Gaps = 9/556 (1%)
Query: 29 TCFSHFWSSALRAKTLTAPS----VRTNDGEGLLRRLGLFELVLIGVGASVGAGIFVVTG 84
T FSHF +SALR+K+L PS VR+ G+ L+RRLGLF+L+L+GVGAS+GAG+FVVTG
Sbjct: 16 TWFSHFRASALRSKSLPPPSSQTAVRSTSGDSLVRRLGLFDLILLGVGASIGAGVFVVTG 75
Query: 85 TVARDAGPGVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNELTAFLVFA 144
TVARDAGPGVTISFLLAGA+ VLNALCYAEL+SRFPAVVGGAY+Y+Y+AFNE+TAFLVF
Sbjct: 76 TVARDAGPGVTISFLLAGASCVLNALCYAELSSRFPAVVGGAYMYSYSAFNEITAFLVFV 135
Query: 145 QLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPIL 204
QLMLDYHIGAASI+RSLASY V++LELFP K +IP W+G G+E LGG LS+NILAPIL
Sbjct: 136 QLMLDYHIGAASISRSLASYAVALLELFPALKGSIPLWMG-SGKELLGGLLSLNILAPIL 194
Query: 205 LALLTIVLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEVDVSNWSPFAPNGFKEILTG 264
LALLT+VLC GV ESS +NS MT KV+IV+VVI AGAFE+DV+NWSPFAPNGFK +LTG
Sbjct: 195 LALLTLVLCQGVRESSAVNSVMTATKVVIVLVVICAGAFEIDVANWSPFAPNGFKAVLTG 254
Query: 265 ATVVFFAYVGFDAVANSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLD 324
ATVVFF+YVGFDAVANSAEESK PQRDLPIGI+GSLL+C +LY+GV LVLTGMVP+ L
Sbjct: 255 ATVVFFSYVGFDAVANSAEESKNPQRDLPIGIMGSLLVCISLYIGVCLVLTGMVPFSLLS 314
Query: 325 EDAPLSDAFASRGLKYVSVLISFGAVAGLTTTLLVGLYVQSRLYLGLGRDGLLPSIFAKV 384
EDAPL++AF+S+G+K+VS+LIS GAVAGLTTTLLVGLYVQSRLYLGLGRDGLLPSIF+++
Sbjct: 315 EDAPLAEAFSSKGMKFVSILISIGAVAGLTTTLLVGLYVQSRLYLGLGRDGLLPSIFSRI 374
Query: 385 HPKRHTPVHSQVWVGIVAGILAGLFNVRVLSHILSVGTLTGYSVVSACVIALRWKDRTSR 444
HP HTP+HSQ+W GIVAG+LAG+FNV LSHILSVGTLTGYSVV+ACV+ALR D+ R
Sbjct: 375 HPTLHTPLHSQIWCGIVAGVLAGIFNVHSLSHILSVGTLTGYSVVAACVVALRLNDKKDR 434
Query: 445 NDSSRLTSAWRQGVICLIIIACCGFGAGLFYRINASYILLIVAVVIAVLASAMLCLRHGY 504
S+R TS+W++GVICL+IIAC GFGAG+FYR +AS I ++++V +AV+ASA+L R Y
Sbjct: 435 ESSNRWTSSWQEGVICLVIIACSGFGAGVFYRFSASVIFILLSVGVAVVASAVLHYRQAY 494
Query: 505 SDP--PGFSCPGVPLLPAVSIFFNLFLFAQLHYEAWWRFVILSFISIGLYAFYGQYHADP 562
+ P GFSCPGVP++P+V IFFN+FLFAQLHYEAW RFV++S ++ +YA YGQYHADP
Sbjct: 495 ALPLGSGFSCPGVPIVPSVCIFFNIFLFAQLHYEAWIRFVVVSVLATAVYALYGQYHADP 554
Query: 563 SSDTIVYHRVAVAEAQ 578
S + Y R E+
Sbjct: 555 S--MLDYQRAPETESD 568
|
Permease involved in the transport of the cationic amino acids. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8W4K3|CAAT4_ARATH Cationic amino acid transporter 4, vacuolar OS=Arabidopsis thaliana GN=CAT4 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 315 bits (806), Expect = 7e-85, Method: Compositional matrix adjust.
Identities = 197/588 (33%), Positives = 316/588 (53%), Gaps = 74/588 (12%)
Query: 36 SSALRAKTLTAPSVRTNDG-EGLLRRLGLFELVLIGVGASVGAGIFVVTGTVARD-AGPG 93
+S +R K + + + NDG L ++L +LV IGVG ++GAG++++ GTVAR+ GP
Sbjct: 2 NSLVRRKQVDSVHLIKNDGPHQLAKKLSAVDLVAIGVGTTIGAGVYILVGTVAREHTGPA 61
Query: 94 VTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNELTAFLVFAQLMLDYHIG 153
+ +SF +AG A+ L+A CYAELASR P+ G AY YAY E A+LV L+LDY IG
Sbjct: 62 LAVSFFIAGVAAALSACCYAELASRCPSA-GSAYHYAYICLGEGIAWLVGWALVLDYTIG 120
Query: 154 AASIARSLASYVVSILELFPFFK--ENIPSWIGHGGEEFLGGTLSINILAPILLALLTIV 211
++IAR + + S FF +N+P ++ + G + ++ A +L+ ++TI+
Sbjct: 121 GSAIARGITPNLAS------FFGGLDNLPVFLAR--QTIPGVGIVVDPCAALLIMIVTIL 172
Query: 212 LCWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEVDVSNW------SPFAPNGFKEILTGA 265
LC+G+ ESS + + +T V V ++ +I G + + W S + P G IL G+
Sbjct: 173 LCFGIKESSTVQAIVTSVNVCTLVFIIVVGGYLACKTGWVGYDLPSGYFPFGLNGILAGS 232
Query: 266 TVVFFAYVGFDAVANSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLDE 325
VVFF+Y+GFD V ++AEE K PQRDLP+GI +LLIC LY+ +S+V+ G+VPY L+
Sbjct: 233 AVVFFSYIGFDTVTSTAEEVKNPQRDLPLGIGIALLICCILYMLLSVVIVGLVPYYSLNP 292
Query: 326 DAPLSDAFASRGLKYVSVLISFGAVAGLTTTLLVGLYVQSRLYLGLGRDGLLPSIFAKVH 385
D P+S AF G+++ + +++ GA+ L +LL L Q R+++ + RDGLLP+ F+++
Sbjct: 293 DTPISSAFGDSGMQWAAYILTTGAITALCASLLGSLLAQPRIFMAMARDGLLPAFFSEIS 352
Query: 386 PKRHTPVHSQVWVGIVAGILAGLFNVRVLSHILSVGTLTGYSVVSACVIALRW------- 438
P+ PV S + +G++A LA +V LS ++SVGTL ++ V+ CV+ LR+
Sbjct: 353 PRTQVPVKSTIAIGVLAAALAFFMDVAQLSEMVSVGTLMAFTAVAVCVLVLRYVPPDGVP 412
Query: 439 ----------------------------------KDRTSRND----SSRLTSAWRQGVIC 460
+ T+R++ R +AW ++C
Sbjct: 413 LSSSSQTLSDTDESRAETENFLVDAIESSDSPLLGNETARDEKYFGKRRKIAAWSIALVC 472
Query: 461 LIIIACCGFGAGLFYRINASYILLIVAVVIAVLASAMLCL--------RHGYSDPPGFSC 512
+ ++ A R+ + I V +L +++ L RH + GF C
Sbjct: 473 IGVLGLA--SAASAERLPSFPRFTICGVSAVILLGSLITLGYIDEDEERHNFGHKGGFLC 530
Query: 513 PGVPLLPAVSIFFNLFLFAQLHYEAWWRFVILSFISIGLYAFYGQYHA 560
P VP LP + I N +L + W R +I I +Y FYG+ H+
Sbjct: 531 PFVPYLPVLCILINTYLIINIGAGTWIRVLIWLLIGSMIYIFYGRSHS 578
|
Permease involved in the transport of the cationic amino acids. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q797A7|YFNA_BACSU Uncharacterized amino acid permease YfnA OS=Bacillus subtilis (strain 168) GN=yfnA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 291 bits (744), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 173/406 (42%), Positives = 247/406 (60%), Gaps = 8/406 (1%)
Query: 36 SSALRAKTLTAPSVRTNDGEGLLRRLGLFELVLIGVGASVGAGIFVVTGTVARD-AGPGV 94
SS R K L S ++ + L R L F+L L+G+G +G GIFV+TGTVA AGP +
Sbjct: 2 SSLFRKKPLETLSAQSKS-KSLARTLSAFDLTLLGIGCVIGTGIFVITGTVAATGAGPAL 60
Query: 95 TISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNELTAFLVFAQLMLDYHIGA 154
ISF+LAG A L A CYAE +S P + G Y Y+Y EL AFL+ LML+Y I
Sbjct: 61 IISFILAGLACALAAFCYAEFSSSIP-ISGSVYSYSYVTLGELLAFLIGWDLMLEYVIAL 119
Query: 155 ASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCW 214
+++A +SY S+L F +IP+ + G N+ A +++ L+T ++
Sbjct: 120 SAVATGWSSYFQSLLA---GFNLHIPAALTGAPGSMAGAVF--NLPAAVIILLITAIVSR 174
Query: 215 GVGESSVLNSCMTVVKVIIVIVVIFAGAFEVDVSNWSPFAPNGFKEILTGATVVFFAYVG 274
GV ES+ N+ + ++K+ I+++ I G V NWSPF P G K ++ A VFFAY+G
Sbjct: 175 GVKESTRFNNVIVLMKIAIILLFIIVGIGYVKPDNWSPFMPFGMKGVILSAATVFFAYLG 234
Query: 275 FDAVANSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLDEDAPLSDAFA 334
FDAV+N++EE K PQ+++P+GI+ +L +C LY+ VSLVLTGM+PY L+ P+S A
Sbjct: 235 FDAVSNASEEVKNPQKNMPVGIISALAVCTVLYIAVSLVLTGMMPYAKLNVGDPVSFALK 294
Query: 335 SRGLKYVSVLISFGAVAGLTTTLLVGLYVQSRLYLGLGRDGLLPSIFAKVHPKRHTPVHS 394
G V+ +IS GA+ G+TT +L LY Q RL + RDGLLP +FAKVHP TP +
Sbjct: 295 FVGQDAVAGIISVGAIIGITTVMLALLYAQVRLTFAMSRDGLLPGLFAKVHPSFKTPFRN 354
Query: 395 QVWVGIVAGILAGLFNVRVLSHILSVGTLTGYSVVSACVIALRWKD 440
GIVA +AG N+ L+H++++GTL ++V+S VI LR K
Sbjct: 355 TWLTGIVAAGIAGFINLGTLAHLVNMGTLAAFTVISIAVIVLRKKH 400
|
Bacillus subtilis (strain 168) (taxid: 224308) |
| >sp|P30823|CTR1_RAT High affinity cationic amino acid transporter 1 OS=Rattus norvegicus GN=Slc7a1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 271 bits (692), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 195/598 (32%), Positives = 305/598 (51%), Gaps = 96/598 (16%)
Query: 51 TNDGEGLLRRLGLFELVLIGVGASVGAGIFVVTGTVARD-AGPGVTISFLLAGAASVLNA 109
+ + L R L ++LV +GVG+++GAG++V+ G VAR+ AGP + ISFL+A ASVL
Sbjct: 22 SREESRLSRCLNTYDLVALGVGSTLGAGVYVLAGAVARENAGPAIVISFLIAALASVLAG 81
Query: 110 LCYAELASRFPAVVGGAYLYAYTAFNELTAFLVFAQLMLDYHIGAASIARSLASYVVSIL 169
LCY E +R P G AYLY+Y EL AF+ L+L Y IG +S+AR+ ++
Sbjct: 82 LCYGEFGARVPKT-GSAYLYSYVTVGELWAFITGWNLILSYIIGTSSVARAWSAT----- 135
Query: 170 ELFPFFKENIPSWIGHGGEEFLG----GTLSI--NILAPILLALLTIVLCWGVGESSVLN 223
F E I IG + + G L+ +I A I++ +LT +L GV ES+++N
Sbjct: 136 -----FDELIGKPIGEFSRQHMALNAPGVLAQTPDIFAVIIIIILTGLLTLGVKESAMVN 190
Query: 224 SCMTVVKVIIVIVVIFAGAFEVDVSNW-------SP---------------FAPNGFKEI 261
T + V+++ ++ +G + + NW SP F P GF +
Sbjct: 191 KIFTCINVLVLCFIMVSGFVKGSIENWQLTENKSSPLCGNNDTNVKYGEGGFMPFGFSGV 250
Query: 262 LTGATVVFFAYVGFDAVANSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYK 321
L+GA F+A+VGFD +A + EE K PQ+ +P+GI+ SLLIC Y GVS LT M+PY
Sbjct: 251 LSGAATCFYAFVGFDCIATTGEEVKNPQKAIPVGIVASLLICFIAYFGVSAALTLMMPYF 310
Query: 322 FLDEDAPLSDAFASRGLKYVSVLISFGAVAGLTTTLLVGLYVQSRLYLGLGRDGLLPSIF 381
LD D+PL AF RG + ++ G++ L+T+ L ++ R+ + DGLL
Sbjct: 311 CLDTDSPLPGAFKYRGWEEAKYAVAVGSLCALSTSPLGSMFPMPRVIYAMAEDGLLFKFL 370
Query: 382 AKVHPKRHTPVHSQVWVGIVAGILAGLFNVRVLSHILSVGTLTGYSVVSACVIALRWK-- 439
AK++ + TP+ + V G +A ++A LF ++ L ++S+GTL YS+V+ACV+ LR++
Sbjct: 371 AKINDRTKTPIIATVTSGAIAAVMAFLFELKDLVDLMSIGTLLAYSLVAACVLVLRYQPE 430
Query: 440 ------------DRTSRNDSSRLTSAWR--------------QGVICLIIIACCGFGAGL 473
D + D + + SA + ++ + F +GL
Sbjct: 431 QPNLVYQMARTTDELDQVDQNEMVSASESQTGFLPAAEKFSLKTILSPKNMEPSKF-SGL 489
Query: 474 FYRINASY--ILLIVAVVIAVL-----------------ASAMLCL-------RHGYSDP 507
I+A +L+I ++AVL S +LC+ R S
Sbjct: 490 IVNISAGLLAVLIITVCIVAVLGREALAEGTLWAVFVMTGSVLLCMLVTGIIWRQPESKT 549
Query: 508 P-GFSCPGVPLLPAVSIFFNLFLFAQLHYEAWWRFVILSFISIGLYAFYGQYHADPSS 564
F P VP+LP +SIF N++L QL W RF + I+ +Y YG +H++ +S
Sbjct: 550 KLSFKVPFVPVLPVLSIFVNIYLMMQLDQGTWVRFAVWMLIAFAIYFGYGVWHSEEAS 607
|
High-affinity, low capacity permease involved in the transport of the cationic amino acids (arginine, lysine and ornithine) in non-hepatic tissues. May also function as an ecotropic retroviral leukemia receptor. Rattus norvegicus (taxid: 10116) |
| >sp|Q09143|CTR1_MOUSE High affinity cationic amino acid transporter 1 OS=Mus musculus GN=Slc7a1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 270 bits (691), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 195/596 (32%), Positives = 303/596 (50%), Gaps = 94/596 (15%)
Query: 51 TNDGEGLLRRLGLFELVLIGVGASVGAGIFVVTGTVARD-AGPGVTISFLLAGAASVLNA 109
+ + L R L ++LV +GVG+++GAG++V+ G VAR+ AGP + ISFL+A ASVL
Sbjct: 22 SREESRLSRCLNTYDLVALGVGSTLGAGVYVLAGAVARENAGPAIVISFLIAALASVLAG 81
Query: 110 LCYAELASRFPAVVGGAYLYAYTAFNELTAFLVFAQLMLDYHIGAASIARSLASYVVSIL 169
LCY E +R P G AYLY+Y EL AF+ L+L Y IG +S+AR+ ++
Sbjct: 82 LCYGEFGARVPKT-GSAYLYSYVTVGELWAFITGWNLILSYIIGTSSVARAWSAT----- 135
Query: 170 ELFPFFKENIPSWIGHGGEEFLG----GTLSI--NILAPILLALLTIVLCWGVGESSVLN 223
F E I IG + + G L+ +I A I++ +LT +L GV ES+++N
Sbjct: 136 -----FDELIGKPIGEFSRQHMALNAPGVLAQTPDIFAVIIIIILTGLLTLGVKESAMVN 190
Query: 224 SCMTVVKVIIVIVVIFAGAFEVDVSNWS--------------------PFAPNGFKEILT 263
T + V+++ ++ +G + + NW F P GF +L+
Sbjct: 191 KIFTCINVLVLCFIVVSGFVKGSIKNWQLTEKNFSCNNNDTNVKYGEGGFMPFGFSGVLS 250
Query: 264 GATVVFFAYVGFDAVANSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFL 323
GA F+A+VGFD +A + EE K PQ+ +P+GI+ SLLIC Y GVS LT M+PY L
Sbjct: 251 GAATCFYAFVGFDCIATTGEEVKNPQKAIPVGIVASLLICFIAYFGVSAALTLMMPYFCL 310
Query: 324 DEDAPLSDAFASRGLKYVSVLISFGAVAGLTTTLLVGLYVQSRLYLGLGRDGLLPSIFAK 383
D D+PL AF +G + ++ G++ L+T+LL ++ R+ + DGLL AK
Sbjct: 311 DIDSPLPGAFKHQGWEEAKYAVAIGSLCALSTSLLGSMFPMPRVIYAMAEDGLLFKFLAK 370
Query: 384 VHPKRHTPVHSQVWVGIVAGILAGLFNVRVLSHILSVGTLTGYSVVSACVIALRWK---- 439
++ + TPV + V G +A ++A LF ++ L ++S+GTL YS+V+ACV+ LR++
Sbjct: 371 INNRTKTPVIATVTSGAIAAVMAFLFELKDLVDLMSIGTLLAYSLVAACVLVLRYQPEQP 430
Query: 440 ----------DRTSRNDSSRLTSAWR--------------QGVICLIIIACCGFGAGLFY 475
+ R D + L SA + ++ + F +GL
Sbjct: 431 NLVYQMARTTEELDRVDQNELVSASESQTGFLPVAEKFSLKSILSPKNVEPSKF-SGLIV 489
Query: 476 RINASYI--LLIVAVVIAVL-----------------ASAMLCL-------RHGYSDPP- 508
I+A + L+I ++AVL S +LC+ R S
Sbjct: 490 NISAGLLAALIITVCIVAVLGREALAEGTLWAVFVMTGSVLLCMLVTGIIWRQPESKTKL 549
Query: 509 GFSCPGVPLLPAVSIFFNLFLFAQLHYEAWWRFVILSFISIGLYAFYGQYHADPSS 564
F P VP+LP +SIF N++L QL W RF + I +Y YG +H++ +S
Sbjct: 550 SFKVPFVPVLPVLSIFVNIYLMMQLDQGTWVRFAVWMLIGFTIYFGYGIWHSEEAS 605
|
High-affinity, low capacity permease involved in the transport of the cationic amino acids (arginine, lysine and ornithine) in non-hepatic tissues. May also function as an ecotropic retroviral leukemia receptor. Mus musculus (taxid: 10090) |
| >sp|Q9ASS7|CAAT2_ARATH Cationic amino acid transporter 2, vacuolar OS=Arabidopsis thaliana GN=CAT2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 267 bits (682), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 158/416 (37%), Positives = 258/416 (62%), Gaps = 18/416 (4%)
Query: 33 HFWS---SALRAKTLTAPSVRTNDGEGLLRRLGLFELVLIGVGASVGAGIFVVTGTVARD 89
H W S +R K + + + +++ G L R L + LV IGVGA++GAG++++ GTVAR+
Sbjct: 14 HSWGYVRSLVRRKQVDSANGQSH-GHQLARALTVPHLVAIGVGATIGAGVYILVGTVARE 72
Query: 90 -AGPGVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNELTAFLVFAQLML 148
+GP + +SFL+AG A+ L+A CYAEL+SR P+ G AY Y+Y E A+++ L+L
Sbjct: 73 HSGPSLALSFLIAGIAAGLSAFCYAELSSRCPSA-GSAYHYSYICVGEGVAWIIGWALIL 131
Query: 149 DYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALL 208
+Y IG +++AR ++ L L ++ +P+ + + G + ++ A IL+ ++
Sbjct: 132 EYTIGGSAVARGISPN----LALIFGGEDGLPAILAR--HQIPGLDIVVDPCAAILVFVV 185
Query: 209 TIVLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEVDVSNW------SPFAPNGFKEIL 262
T +LC G+ ES+ +T V V +++ VI AG++ + W + F P G +
Sbjct: 186 TGLLCMGIKESTFAQGIVTAVNVCVLLFVIVAGSYLGFKTGWPGYELPTGFFPFGVDGMF 245
Query: 263 TGATVVFFAYVGFDAVANSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKF 322
G+ VFFA++GFD+VA++AEE + PQRDLPIGI +LL+C +LY+ VS+V+ G++PY
Sbjct: 246 AGSATVFFAFIGFDSVASTAEEVRNPQRDLPIGIGLALLLCCSLYMMVSIVIVGLIPYYA 305
Query: 323 LDEDAPLSDAFASRGLKYVSVLISFGAVAGLTTTLLVGLYVQSRLYLGLGRDGLLPSIFA 382
+D D P+S AFAS +++ LI+ GAV L + L+ L Q R+ + + RDGLLPSIF+
Sbjct: 306 MDPDTPISSAFASHDMQWAVYLITLGAVMALCSALMGALLPQPRILMAMARDGLLPSIFS 365
Query: 383 KVHPKRHTPVHSQVWVGIVAGILAGLFNVRVLSHILSVGTLTGYSVVSACVIALRW 438
++ + PV + V G+ A LA +V L+ ++SVGTL +++V+ V+ LR+
Sbjct: 366 DINKRTQVPVKATVATGLCAATLAFFMDVSQLAGMVSVGTLLAFTMVAISVLILRY 421
|
Permease involved in the transport of the cationic amino acids. Arabidopsis thaliana (taxid: 3702) |
| >sp|B3TP03|CTR2_CHICK Low affinity cationic amino acid transporter 2 OS=Gallus gallus GN=SLC7A2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 258 bits (660), Expect = 7e-68, Method: Compositional matrix adjust.
Identities = 193/601 (32%), Positives = 295/601 (49%), Gaps = 103/601 (17%)
Query: 50 RTNDGEGL----LRRLGLFELVLIGVGASVGAGIFVVTGTVAR-DAGPGVTISFLLAGAA 104
+ GEGL R L +L+ +GVG+++GAG++V+ G VA+ D+GP + +SFL+A A
Sbjct: 18 KNIKGEGLEDSLCRCLSTLDLIALGVGSTLGAGVYVLAGEVAKSDSGPSIVVSFLIAALA 77
Query: 105 SVLNALCYAELASRFPAVVGGAYLYAYTAFNELTAFLVFAQLMLDYHIGAASIARSLASY 164
SV+ LCYAE +R P G AYLY Y A EL AF+ L+L Y IG +S+AR+ +
Sbjct: 78 SVMAGLCYAEFGARVPKT-GSAYLYTYVAVGELWAFITGWNLILSYVIGTSSVARAWSGT 136
Query: 165 VVSIL-----ELFP-FFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGVGE 218
+L F +FK N P G E+ + A L+ LL+ +L +GV E
Sbjct: 137 FDELLGKQISHFFKTYFKMNYP-----GLAEY------PDFFAVFLILLLSGLLSFGVKE 185
Query: 219 SSVLNSCMTVVKVIIVIVVIFAGAFEVDVSNWS--------------------------- 251
S+ +N T + +++++ V+ +G + DV NW
Sbjct: 186 SAWVNKIFTAINILVLLFVMISGFVKGDVDNWRISEEYLINLSEIAENFSSYKNVTSIYG 245
Query: 252 --PFAPNGFKEILTGATVVFFAYVGFDAVANSAEESKKPQRDLPIGILGSLLICAALYVG 309
F P GF L GA F+A+VGFD +A + EE + PQ+ +PIGI+ SLL+C Y G
Sbjct: 246 SGGFMPYGFTGTLAGAATCFYAFVGFDCIATTGEEVRNPQKAIPIGIVVSLLVCFMAYFG 305
Query: 310 VSLVLTGMVPYKFLDEDAPLSDAFASRGLKYVSVLISFGAVAGLTTTLLVGLYVQSRLYL 369
VS LT M+PY LDE +PL AFA G +++ G++ L+T+LL ++ R+
Sbjct: 306 VSAALTLMMPYYLLDEKSPLPVAFAYVGWGPAKYVVAVGSLCALSTSLLGSMFPLPRIVF 365
Query: 370 GLGRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGILAGLFNVRVLSHILSVGTLTGYSVV 429
+ RDGLL S AKV KR P+ + + G+++ I+A LF+++ L I+S+GTL YS+V
Sbjct: 366 AMARDGLLFSFLAKVS-KRQAPLLATLTAGVISAIMAFLFDLKALVDIMSIGTLLAYSLV 424
Query: 430 SACVIALRWKD----------------------------------------RTSRNDSSR 449
+ CV+ LR++ +T N SS
Sbjct: 425 ATCVLILRYQPSLTYEQPKYSPEKATLAASKRESAVSESQINMIQESHFSLQTLINPSSL 484
Query: 450 LTSAWRQGVIC---LIIIACCG------FGAGLFYRINASYILLIVAVVIAVLASAMLCL 500
T V C L+ CG +G + I L+ +V++ + + +L
Sbjct: 485 PTEQTATTVNCFVGLLAFLVCGLSALTTYGTHFIANLEPWSICLLATLVVSFIVTILLIQ 544
Query: 501 RHGYSDPP-GFSCPGVPLLPAVSIFFNLFLFAQLHYEAWWRFVILSFISIGLYAFYGQYH 559
R + F P +P LP++SI N++L QL + W RF I + +Y YG H
Sbjct: 545 RQPQNQQKVAFMVPLLPFLPSLSILVNIYLMVQLSADTWIRFSIWMALGFIIYFTYGIRH 604
Query: 560 A 560
+
Sbjct: 605 S 605
|
Low-affinity, high capacity permease involved in the transport of the cationic amino acids (arginine, lysine and ornithine). Gallus gallus (taxid: 9031) |
| >sp|P30825|CTR1_HUMAN High affinity cationic amino acid transporter 1 OS=Homo sapiens GN=SLC7A1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 256 bits (653), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 200/614 (32%), Positives = 301/614 (49%), Gaps = 103/614 (16%)
Query: 39 LRAKTLTAPSVRTNDGEGLLRRLGLFELVLIGVGASVGAGIFVVTGTVARD-AGPGVTIS 97
LR K + T L R L F+LV +GVG+++GAG++V+ G VAR+ AGP + IS
Sbjct: 14 LRRKVVDCSREETR----LSRCLNTFDLVALGVGSTLGAGVYVLAGAVARENAGPAIVIS 69
Query: 98 FLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNELTAFLVFAQLMLDYHIGAASI 157
FL+A ASVL LCY E +R P G AYLY+Y EL AF+ L+L Y IG +S+
Sbjct: 70 FLIAALASVLAGLCYGEFGARVPKT-GSAYLYSYVTVGELWAFITGWNLILSYIIGTSSV 128
Query: 158 ARSLASYVVSILELFPFFKENIPSWIGHGGEEFLG----GTLSIN--ILAPILLALLTIV 211
AR+ ++ F E I IG + G L+ N I A I++ +LT +
Sbjct: 129 ARAWSAT----------FDELIGRPIGEFSRTHMTLNAPGVLAENPDIFAVIIILILTGL 178
Query: 212 LCWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEVDVSNWS-------------------- 251
L GV ES+++N T + V+++ ++ +G + V NW
Sbjct: 179 LTLGVKESAMVNKIFTCINVLVLGFIMVSGFVKGSVKNWQLTEEDFGNTSGRLCLNNDTK 238
Query: 252 -------PFAPNGFKEILTGATVVFFAYVGFDAVANSAEESKKPQRDLPIGILGSLLICA 304
F P GF +L+GA F+A+VGFD +A + EE K PQ+ +P+GI+ SLLIC
Sbjct: 239 EGKPGVGGFMPFGFSGVLSGAATCFYAFVGFDCIATTGEEVKNPQKAIPVGIVASLLICF 298
Query: 305 ALYVGVSLVLTGMVPYKFLDEDAPLSDAFASRGLKYVSVLISFGAVAGLTTTLLVGLYVQ 364
Y GVS LT M+PY LD ++PL DAF G + ++ G++ L+ +LL ++
Sbjct: 299 IAYFGVSAALTLMMPYFCLDNNSPLPDAFKHVGWEGAKYAVAVGSLCALSASLLGSMFPM 358
Query: 365 SRLYLGLGRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGILAGLFNVRVLSHILSVGTLT 424
R+ + DGLL A V+ + TP+ + + G VA ++A LF+++ L ++S+GTL
Sbjct: 359 PRVIYAMAEDGLLFKFLANVNDRTKTPIIATLASGAVAAVMAFLFDLKDLVDLMSIGTLL 418
Query: 425 GYSVVSACVIALRWK--------------DRTSRNDSSRLTSAWRQGVICL--------- 461
YS+V+ACV+ LR++ D D + L S + L
Sbjct: 419 AYSLVAACVLVLRYQPEQPNLVYQMASTSDELDPADQNELASTNDSQLGFLPEAEMFSLK 478
Query: 462 IIIACCGFG----AGLFYRINASYI--LLIVAVVIAVL-----------------ASAML 498
I++ +GL I+ S I L+I ++ VL SA+L
Sbjct: 479 TILSPKNMEPSKISGLIVNISTSLIAVLIITFCIVTVLGREALTKGALWAVFLLAGSALL 538
Query: 499 CL-------RHGYSDPP-GFSCPGVPLLPAVSIFFNLFLFAQLHYEAWWRFVILSFISIG 550
C R S F P +P+LP +SIF N++L QL W RF + I
Sbjct: 539 CAVVTGVIWRQPESKTKLSFKVPFLPVLPILSIFVNVYLMMQLDQGTWVRFAVWMLIGFI 598
Query: 551 LYAFYGQYHADPSS 564
+Y YG +H++ +S
Sbjct: 599 IYFGYGLWHSEEAS 612
|
High-affinity, low capacity permease involved in the transport of the cationic amino acids (arginine, lysine and ornithine) in non-hepatic tissues. May also function as an ecotropic retroviral leukemia receptor. Homo sapiens (taxid: 9606) |
| >sp|Q84MA5|CAAT1_ARATH Cationic amino acid transporter 1 OS=Arabidopsis thaliana GN=CAT1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 254 bits (650), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 159/536 (29%), Positives = 293/536 (54%), Gaps = 20/536 (3%)
Query: 48 SVRTNDGEGLLRRLGLFELVLIGVGASVGAGIFVVTGTVARD-AGPGVTISFLLAGAASV 106
++ G + + L ++L+ G+GA +G+GIFV+TG AR+ +GP V +S++++G +++
Sbjct: 61 EMKARSGHEMKKTLTWWDLMWFGIGAVIGSGIFVLTGLEARNHSGPAVVLSYVVSGVSAM 120
Query: 107 LNALCYAELASRFPAVVGGAYLYAYTAFNELTAFLVFAQLMLDYHIGAASIARSLASYVV 166
L+ CY E A P V GG++ Y + AF+ ++L+Y +G A++ARS SY
Sbjct: 121 LSVFCYTEFAVEIP-VAGGSFAYLRVELGDFMAFIAAGNIILEYVVGGAAVARSWTSYFA 179
Query: 167 SILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGVGESSVLNSCM 226
++L P E+ + GE++ ++ +A + A++ ++ G SS N
Sbjct: 180 TLLNHKP---EDFRIIVHKLGEDYS----HLDPIAVGVCAIICVLAVVGTKGSSRFNYIA 232
Query: 227 TVVKVIIVIVVIFAGAFEVDVSNWSPFAPNGFKEILTGATVVFFAYVGFDAVANSAEESK 286
+++ +++++ VI AG + DV N+S F P G + + A V+FFAY+GFDAV+ AEE+K
Sbjct: 233 SIIHMVVILFVIIAGFTKADVKNYSDFTPYGVRGVFKSAAVLFFAYIGFDAVSTMAEETK 292
Query: 287 KPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLDEDAPLSDAFASRGLKYVSVLIS 346
P RD+PIG++GS+++ Y +++ L M PY+ +D DAP S AF++ G + +++
Sbjct: 293 NPGRDIPIGLVGSMVVTTVCYCLMAVTLCLMQPYQQIDPDAPFSVAFSAVGWDWAKYIVA 352
Query: 347 FGAVAGLTTTLLVGLYVQSRLYLGLGRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGILA 406
FGA+ G+TT LLVG Q+R + R ++P A+V+ K TP+++ V + ++A
Sbjct: 353 FGALKGMTTVLLVGAIGQARYMTHIARAHMMPPWLAQVNAKTGTPINATVVMLAATALIA 412
Query: 407 GLFNVRVLSHILSVGTLTGYSVVSACVIALRW--KDRTSRNDSSRLTSAWRQGVICLIII 464
+++L+ +LSV TL + V+ ++ R+ TS D ++ ++ L +I
Sbjct: 413 FFTKLKILADLLSVSTLFIFMFVAVALLVRRYYVTGETSTRDRNKF-------LVFLGLI 465
Query: 465 ACCGFGAGLFYRINAS-YILLIVAVVIAVLAS-AMLCLRHGYSDPPGFSCPGVPLLPAVS 522
+++ + +I + V I L++ AM L P + P VP LP+ S
Sbjct: 466 LASSTATAVYWALEEEGWIGYCITVPIWFLSTVAMKFLVPQARAPKIWGVPLVPWLPSAS 525
Query: 523 IFFNLFLFAQLHYEAWWRFVILSFISIGLYAFYGQYHADPSSDTIVYHRVAVAEAQ 578
I N+FL + +++ RF I + I + Y +G + ++ + + A+ +A+
Sbjct: 526 IAINIFLLGSIDTKSFVRFAIWTGILLIYYVLFGLHATYDTAKATLKEKQALQKAE 581
|
High-affinity permease involved in the transport of the cationic amino acids (e.g. arginine, lysine, histidine, citrulline, valine, and glutamate). Transport mostly basic amino-acids, and, to a lower extent neutral and acidic amino-acids. May function as a proton symporter. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8GYB4|CAAT3_ARATH Cationic amino acid transporter 3, mitochondrial OS=Arabidopsis thaliana GN=CAT3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 252 bits (644), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 147/391 (37%), Positives = 245/391 (62%), Gaps = 14/391 (3%)
Query: 55 EGLLRRLGLFELVLIGVGASVGAGIFVVTGTVARD-AGPGVTISFLLAGAASVLNALCYA 113
+ L + L L+ IGVG+++GAG++++ GTVAR+ +GP + +SFL+AG ++ L+A CYA
Sbjct: 27 QQLAKALTFPHLIAIGVGSTIGAGVYILVGTVAREHSGPALALSFLIAGISAALSAFCYA 86
Query: 114 ELASRFPAVVGGAYLYAYTAFNELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFP 173
EL+SRFP+ G AY Y+Y E A+L+ L+L+Y IG +++AR ++ + I
Sbjct: 87 ELSSRFPSA-GSAYHYSYICIGEGVAWLIGWALILEYTIGGSTVARGISPNLAMIFG--- 142
Query: 174 FFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGVGESSVLNSCMTVVKVII 233
++ +P+ + + G + ++ A +L+ ++T + C GV ES+ +T V +
Sbjct: 143 -GEDCLPTILAR--HQIPGLDIVVDPCAAVLVFIVTGLCCLGVKESTFAQGIVTTANVFV 199
Query: 234 VIVVIFAGAFEVDVSNW------SPFAPNGFKEILTGATVVFFAYVGFDAVANSAEESKK 287
+I VI AG++ + W + + P G +LTG+ VFFAY+GFD VA+ AEE K
Sbjct: 200 MIFVIVAGSYLCFKTGWVGYELPTGYFPYGVDGMLTGSATVFFAYIGFDTVASMAEEVKN 259
Query: 288 PQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLDEDAPLSDAFASRGLKYVSVLISF 347
P+RDLP+GI SLL+C LY+ VS+V+ G+VPY +D D P+S AF+S G+++ + LI+
Sbjct: 260 PRRDLPLGIGISLLLCCLLYMMVSVVIVGLVPYYAMDPDTPISSAFSSHGIQWAAYLINL 319
Query: 348 GAVAGLTTTLLVGLYVQSRLYLGLGRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGILAG 407
GAV L + L+ + Q R+ + + RDGLLPS F+ V+ + P++ + G+ A ILA
Sbjct: 320 GAVMALCSALMGSILPQPRILMAMARDGLLPSYFSYVNQRTQVPINGTITTGVCAAILAF 379
Query: 408 LFNVRVLSHILSVGTLTGYSVVSACVIALRW 438
+V L+ ++SVGTL +++V+ ++ +R+
Sbjct: 380 FMDVSQLAGMVSVGTLVAFTMVAISLLIVRY 410
|
Permease involved in the transport of the cationic neutral or acidic amino acids. Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 578 | ||||||
| 297734594 | 600 | unnamed protein product [Vitis vinifera] | 0.946 | 0.911 | 0.787 | 0.0 | |
| 359489192 | 574 | PREDICTED: uncharacterized amino acid pe | 0.946 | 0.952 | 0.787 | 0.0 | |
| 147792568 | 623 | hypothetical protein VITISV_020825 [Viti | 0.944 | 0.876 | 0.755 | 0.0 | |
| 255541076 | 568 | cationic amino acid transporter, putativ | 0.961 | 0.978 | 0.771 | 0.0 | |
| 356531810 | 558 | PREDICTED: uncharacterized amino acid pe | 0.925 | 0.958 | 0.762 | 0.0 | |
| 356567014 | 560 | PREDICTED: uncharacterized amino acid pe | 0.934 | 0.964 | 0.753 | 0.0 | |
| 224067463 | 577 | cationic amino acid transporter [Populus | 0.923 | 0.925 | 0.768 | 0.0 | |
| 18390592 | 569 | cationic amino acid transporter 9 [Arabi | 0.946 | 0.961 | 0.715 | 0.0 | |
| 307136427 | 562 | cationic amino acid transporter [Cucumis | 0.899 | 0.925 | 0.739 | 0.0 | |
| 115447681 | 605 | Os02g0655700 [Oryza sativa Japonica Grou | 0.975 | 0.932 | 0.698 | 0.0 |
| >gi|297734594|emb|CBI16645.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 843 bits (2179), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 436/554 (78%), Positives = 486/554 (87%), Gaps = 7/554 (1%)
Query: 32 SHFWSSALRAKTLTAPS-----VRTNDGEGLLRRLGLFELVLIGVGASVGAGIFVVTGTV 86
S F SSALR KTL + S +RT G+ L+RRLGLF+L+LIGVGAS+GAGIFVVTGTV
Sbjct: 47 SRFCSSALRTKTLASSSPSDSSIRTLSGDALVRRLGLFDLILIGVGASIGAGIFVVTGTV 106
Query: 87 ARDAGPGVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNELTAFLVFAQL 146
ARDAGPGVTISF+LAGA+ VLNALCYAELASRFPAVVGGAYLY YTAFNELTAFLVFAQL
Sbjct: 107 ARDAGPGVTISFILAGASCVLNALCYAELASRFPAVVGGAYLYTYTAFNELTAFLVFAQL 166
Query: 147 MLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLA 206
MLDYHIGAASIARSLASYVV++LELFPFFKENIPSWIGHGGEEFLGG LSINILAPILL
Sbjct: 167 MLDYHIGAASIARSLASYVVAVLELFPFFKENIPSWIGHGGEEFLGGALSINILAPILLV 226
Query: 207 LLTIVLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEVDVSNWSPFAPNGFKEILTGAT 266
LLTI+LC GVGESS +N MTV KV+IV+ VI GAF+VDVSNWSPFAPNGF+ ILTGAT
Sbjct: 227 LLTIILCRGVGESSAVNCFMTVTKVVIVLFVIIVGAFKVDVSNWSPFAPNGFEAILTGAT 286
Query: 267 VVFFAYVGFDAVANSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLDED 326
VVFFAYVGFDAVANSAEESK+PQRDLPI I+GSLL+C LY+GV LV+TGMVPYK L ED
Sbjct: 287 VVFFAYVGFDAVANSAEESKRPQRDLPIAIMGSLLVCVVLYIGVCLVITGMVPYKLLGED 346
Query: 327 APLSDAFASRGLKYVSVLISFGAVAGLTTTLLVGLYVQSRLYLGLGRDGLLPSIFAKVHP 386
APL++AF S+GLKYVS+LIS GAVAGLTTTLLVGLYVQSRLYLGLGRDGLLPS+FA+VHP
Sbjct: 347 APLAEAFTSKGLKYVSILISIGAVAGLTTTLLVGLYVQSRLYLGLGRDGLLPSLFARVHP 406
Query: 387 KRHTPVHSQVWVGIVAGILAGLFNVRVLSHILSVGTLTGYSVVSACVIALRWKDRTSRND 446
K HTPVHSQ+WVGIVA ILAGLFN+ LSHILSVG+LTGYSVV+ACV+ LRW D+T+
Sbjct: 407 KAHTPVHSQIWVGIVASILAGLFNIHALSHILSVGSLTGYSVVAACVVTLRWNDKTASQV 466
Query: 447 SSRLTSAWRQGVICLIIIACCGFGAGLFYRINASYILLIVAVVIAVLASAMLCLRHGYSD 506
S+R TS W++GVI LIIIA CGF AGLFYR+ AS+ L+VA VIAVLAS L R Y +
Sbjct: 467 STRWTSTWQEGVIYLIIIAGCGFSAGLFYRVGASFFCLLVAAVIAVLASIALYSRQVYMN 526
Query: 507 PPGFSCPGVPLLPAVSIFFNLFLFAQLHYEAWWRFVILSFISIGLYAFYGQYHADP--SS 564
PPGFSCPGVP++PAV IFFN+FLFAQLHYEAW RFVILS ISIG+YAFYGQYHADP S+
Sbjct: 527 PPGFSCPGVPIVPAVCIFFNIFLFAQLHYEAWVRFVILSLISIGIYAFYGQYHADPLSSN 586
Query: 565 DTIVYHRVAVAEAQ 578
+TI+YHR + E Q
Sbjct: 587 ETIIYHRAPIEEGQ 600
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359489192|ref|XP_002272634.2| PREDICTED: uncharacterized amino acid permease YhdG-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 843 bits (2177), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 436/554 (78%), Positives = 486/554 (87%), Gaps = 7/554 (1%)
Query: 32 SHFWSSALRAKTLTAPS-----VRTNDGEGLLRRLGLFELVLIGVGASVGAGIFVVTGTV 86
S F SSALR KTL + S +RT G+ L+RRLGLF+L+LIGVGAS+GAGIFVVTGTV
Sbjct: 21 SRFCSSALRTKTLASSSPSDSSIRTLSGDALVRRLGLFDLILIGVGASIGAGIFVVTGTV 80
Query: 87 ARDAGPGVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNELTAFLVFAQL 146
ARDAGPGVTISF+LAGA+ VLNALCYAELASRFPAVVGGAYLY YTAFNELTAFLVFAQL
Sbjct: 81 ARDAGPGVTISFILAGASCVLNALCYAELASRFPAVVGGAYLYTYTAFNELTAFLVFAQL 140
Query: 147 MLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLA 206
MLDYHIGAASIARSLASYVV++LELFPFFKENIPSWIGHGGEEFLGG LSINILAPILL
Sbjct: 141 MLDYHIGAASIARSLASYVVAVLELFPFFKENIPSWIGHGGEEFLGGALSINILAPILLV 200
Query: 207 LLTIVLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEVDVSNWSPFAPNGFKEILTGAT 266
LLTI+LC GVGESS +N MTV KV+IV+ VI GAF+VDVSNWSPFAPNGF+ ILTGAT
Sbjct: 201 LLTIILCRGVGESSAVNCFMTVTKVVIVLFVIIVGAFKVDVSNWSPFAPNGFEAILTGAT 260
Query: 267 VVFFAYVGFDAVANSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLDED 326
VVFFAYVGFDAVANSAEESK+PQRDLPI I+GSLL+C LY+GV LV+TGMVPYK L ED
Sbjct: 261 VVFFAYVGFDAVANSAEESKRPQRDLPIAIMGSLLVCVVLYIGVCLVITGMVPYKLLGED 320
Query: 327 APLSDAFASRGLKYVSVLISFGAVAGLTTTLLVGLYVQSRLYLGLGRDGLLPSIFAKVHP 386
APL++AF S+GLKYVS+LIS GAVAGLTTTLLVGLYVQSRLYLGLGRDGLLPS+FA+VHP
Sbjct: 321 APLAEAFTSKGLKYVSILISIGAVAGLTTTLLVGLYVQSRLYLGLGRDGLLPSLFARVHP 380
Query: 387 KRHTPVHSQVWVGIVAGILAGLFNVRVLSHILSVGTLTGYSVVSACVIALRWKDRTSRND 446
K HTPVHSQ+WVGIVA ILAGLFN+ LSHILSVG+LTGYSVV+ACV+ LRW D+T+
Sbjct: 381 KAHTPVHSQIWVGIVASILAGLFNIHALSHILSVGSLTGYSVVAACVVTLRWNDKTASQV 440
Query: 447 SSRLTSAWRQGVICLIIIACCGFGAGLFYRINASYILLIVAVVIAVLASAMLCLRHGYSD 506
S+R TS W++GVI LIIIA CGF AGLFYR+ AS+ L+VA VIAVLAS L R Y +
Sbjct: 441 STRWTSTWQEGVIYLIIIAGCGFSAGLFYRVGASFFCLLVAAVIAVLASIALYSRQVYMN 500
Query: 507 PPGFSCPGVPLLPAVSIFFNLFLFAQLHYEAWWRFVILSFISIGLYAFYGQYHADP--SS 564
PPGFSCPGVP++PAV IFFN+FLFAQLHYEAW RFVILS ISIG+YAFYGQYHADP S+
Sbjct: 501 PPGFSCPGVPIVPAVCIFFNIFLFAQLHYEAWVRFVILSLISIGIYAFYGQYHADPLSSN 560
Query: 565 DTIVYHRVAVAEAQ 578
+TI+YHR + E Q
Sbjct: 561 ETIIYHRAPIEEGQ 574
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147792568|emb|CAN66397.1| hypothetical protein VITISV_020825 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 828 bits (2139), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 435/576 (75%), Positives = 485/576 (84%), Gaps = 30/576 (5%)
Query: 33 HFWSSALRAKTLTAPS-----VRTNDGEGLLRRLGLFELVLIGVGASVGAGIFVVTGTVA 87
F SSALR KTL + S +RT G+ L+RRLGLF+L+LIGVGAS+GAGIFVVTGTVA
Sbjct: 48 RFCSSALRTKTLASSSPSDSSIRTLSGDALVRRLGLFDLILIGVGASIGAGIFVVTGTVA 107
Query: 88 RDAGPGVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNELTAFLVFAQLM 147
RDAGPGVTISF+LAGA+ VLNALCYAELASRFPAVVGGAYLY YTAFNELTAFLVFAQLM
Sbjct: 108 RDAGPGVTISFILAGASCVLNALCYAELASRFPAVVGGAYLYTYTAFNELTAFLVFAQLM 167
Query: 148 LDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLAL 207
LDYHIGAASIARSLASYVV++LELFPFFKENIPSWIGHGGEEFLGG LSINILAPILL L
Sbjct: 168 LDYHIGAASIARSLASYVVAVLELFPFFKENIPSWIGHGGEEFLGGALSINILAPILLVL 227
Query: 208 LTIVLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEVDVSNWSPFAPNGFKEILTGATV 267
LTI+LC GVGESS +N MTV KV+IV+ VI GAF+VDVSNWSPFAPNGF+ ILTGATV
Sbjct: 228 LTIILCRGVGESSAVNCFMTVTKVVIVLFVIIVGAFKVDVSNWSPFAPNGFEAILTGATV 287
Query: 268 VFFAYVGFDAVANSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLDEDA 327
VFFAYVGFDAVANSAEESK+PQRDLPI I+GSLL+C LY+GV LV+TGMVPYK L EDA
Sbjct: 288 VFFAYVGFDAVANSAEESKRPQRDLPIAIMGSLLVCVVLYIGVCLVITGMVPYKLLGEDA 347
Query: 328 PLSDAFASRGLKYVSVLISFGAVAGLTTTLLVGLYV-----------------------Q 364
PL++AF S+GLKYVS+LIS GAVAGLTTTLLVGLYV Q
Sbjct: 348 PLAEAFTSKGLKYVSILISIGAVAGLTTTLLVGLYVQVNIETPMYFTWCQCTNDSVSYEQ 407
Query: 365 SRLYLGLGRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGILAGLFNVRVLSHILSVGTLT 424
SRLYLGLGRDGLLPS+FA+VHPK HTPVHSQ+WVGIVA ILAGLFN+ LSHILSVG+LT
Sbjct: 408 SRLYLGLGRDGLLPSLFARVHPKAHTPVHSQIWVGIVASILAGLFNIHALSHILSVGSLT 467
Query: 425 GYSVVSACVIALRWKDRTSRNDSSRLTSAWRQGVICLIIIACCGFGAGLFYRINASYILL 484
GYSVV+ACV+ LRW D+T+ S+R TS W++GVI LIIIA CGF AGLFYR+ AS+ L
Sbjct: 468 GYSVVAACVVTLRWNDKTASQVSTRWTSTWQEGVIYLIIIAGCGFSAGLFYRVGASFFCL 527
Query: 485 IVAVVIAVLASAMLCLRHGYSDPPGFSCPGVPLLPAVSIFFNLFLFAQLHYEAWWRFVIL 544
+VA VIAVLAS L R Y +PPGFSCPGVP++PAV IFFN+FLFAQLHYEAW RFVIL
Sbjct: 528 LVAAVIAVLASIALYSRQVYMNPPGFSCPGVPIVPAVCIFFNIFLFAQLHYEAWVRFVIL 587
Query: 545 SFISIGLYAFYGQYHADP--SSDTIVYHRVAVAEAQ 578
S ISIG+YAFYGQYHADP S++TI+YHR + E Q
Sbjct: 588 SLISIGIYAFYGQYHADPLSSNETIIYHRAPIEEGQ 623
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255541076|ref|XP_002511602.1| cationic amino acid transporter, putative [Ricinus communis] gi|223548782|gb|EEF50271.1| cationic amino acid transporter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 813 bits (2101), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 431/559 (77%), Positives = 486/559 (86%), Gaps = 3/559 (0%)
Query: 22 SASGPPPTCFSHFWSSALRAKTLTAPS---VRTNDGEGLLRRLGLFELVLIGVGASVGAG 78
AS PP+ FS WSSA R K L +P V TN +GL RRLGLF+L+L+GVGAS+GAG
Sbjct: 8 DASQAPPSWFSQCWSSARRTKPLNSPFDTLVHTNPSDGLSRRLGLFDLLLLGVGASIGAG 67
Query: 79 IFVVTGTVARDAGPGVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNELT 138
IFVVTGTVARDAGPGVTISF+LAG + +LNALCYAELASRFPAVVGGAYLY Y+AFNE+T
Sbjct: 68 IFVVTGTVARDAGPGVTISFILAGLSCILNALCYAELASRFPAVVGGAYLYTYSAFNEIT 127
Query: 139 AFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSIN 198
AFLVF QLMLDYHIGAASIARSLASY+V+ILE+FP FK++IPSWIGHGG+EF GGTLSIN
Sbjct: 128 AFLVFGQLMLDYHIGAASIARSLASYLVTILEMFPVFKDHIPSWIGHGGQEFFGGTLSIN 187
Query: 199 ILAPILLALLTIVLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEVDVSNWSPFAPNGF 258
ILAPILLALLT+VLCWGVGESS+LNS MTV KV+IVI+VIF G+FEVDVSNWSPFAP G
Sbjct: 188 ILAPILLALLTVVLCWGVGESSILNSFMTVTKVVIVIIVIFVGSFEVDVSNWSPFAPKGV 247
Query: 259 KEILTGATVVFFAYVGFDAVANSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMV 318
K ILTGATVVFFAYVGFDAVANSAEE+K+PQ+DLP+GI+GSL+IC LY+GV LVLTGMV
Sbjct: 248 KAILTGATVVFFAYVGFDAVANSAEEAKRPQQDLPLGIIGSLVICIVLYIGVCLVLTGMV 307
Query: 319 PYKFLDEDAPLSDAFASRGLKYVSVLISFGAVAGLTTTLLVGLYVQSRLYLGLGRDGLLP 378
PY L EDAPL++AF S+GLKYVS+LIS GAVAGLTTTLLVGLYVQSRLYLGLGRDGLLP
Sbjct: 308 PYTLLGEDAPLAEAFTSKGLKYVSILISIGAVAGLTTTLLVGLYVQSRLYLGLGRDGLLP 367
Query: 379 SIFAKVHPKRHTPVHSQVWVGIVAGILAGLFNVRVLSHILSVGTLTGYSVVSACVIALRW 438
SIFAKVHP +HTP+HSQVWVGIVA IL GLFNV VLSHILSVG+LTGYSVVSACV+ LRW
Sbjct: 368 SIFAKVHPSQHTPIHSQVWVGIVAAILGGLFNVHVLSHILSVGSLTGYSVVSACVVTLRW 427
Query: 439 KDRTSRNDSSRLTSAWRQGVICLIIIACCGFGAGLFYRINASYILLIVAVVIAVLASAML 498
KD+ + SSR TSAW++GVICLII+ACCGF +GL YR AS+I L VAV IAVLA+ L
Sbjct: 428 KDKAVSHVSSRWTSAWQEGVICLIIVACCGFSSGLMYRYGASFIFLAVAVFIAVLAATAL 487
Query: 499 CLRHGYSDPPGFSCPGVPLLPAVSIFFNLFLFAQLHYEAWWRFVILSFISIGLYAFYGQY 558
R Y+DPPGFSCP VP++PAVSIFFN+FLFAQLH+EAW RFV+LS +G+YAFYGQY
Sbjct: 488 YFRQVYTDPPGFSCPWVPIVPAVSIFFNMFLFAQLHHEAWVRFVVLSITMVGIYAFYGQY 547
Query: 559 HADPSSDTIVYHRVAVAEA 577
HA SD IV +R A AEA
Sbjct: 548 HAKAVSDEIVVYRRAPAEA 566
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356531810|ref|XP_003534469.1| PREDICTED: uncharacterized amino acid permease YhdG-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 797 bits (2058), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 414/543 (76%), Positives = 469/543 (86%), Gaps = 8/543 (1%)
Query: 38 ALRAKTLTAPS---VRTNDGEGLLRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGPGV 94
ALR+K L +P+ R + GL RRLG+ +LVL+G+GAS+GAGIFVVTGTVARDAGPGV
Sbjct: 20 ALRSKRLVSPAEKAARDSSDLGLSRRLGVLDLVLLGIGASIGAGIFVVTGTVARDAGPGV 79
Query: 95 TISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNELTAFLVFAQLMLDYHIGA 154
TISF+LAGA+ V+NALCYAELA+RFPAVVGGAYLYAYTAFNELTAFLVF QLMLDYHIGA
Sbjct: 80 TISFILAGASCVINALCYAELATRFPAVVGGAYLYAYTAFNELTAFLVFGQLMLDYHIGA 139
Query: 155 ASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCW 214
ASIARSLASY+++ILELFP FK+NIP WIGHG E +G LSIN+LAPILL LLT +LC
Sbjct: 140 ASIARSLASYLINILELFPVFKDNIPKWIGHG--EDIGDVLSINVLAPILLVLLTFILCR 197
Query: 215 GVGESSVLNSCMTVVKVIIVIVVIFAGAFEVDVSNWSPFAPNGFKEILTGATVVFFAYVG 274
GV ESSV+NS MTV KVIIVI+VIFAGAFEVDVSNWSPFAPNG K I TGATVVFFAYVG
Sbjct: 198 GVQESSVVNSLMTVTKVIIVIIVIFAGAFEVDVSNWSPFAPNGLKAIFTGATVVFFAYVG 257
Query: 275 FDAVANSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLDEDAPLSDAFA 334
FDAVANSAEESK+PQRDLPIGI+GSLLIC ALY+GV LV+TGMVPY L EDAPL++AF
Sbjct: 258 FDAVANSAEESKRPQRDLPIGIIGSLLICIALYIGVCLVITGMVPYNLLGEDAPLAEAFT 317
Query: 335 SRGLKYVSVLISFGAVAGLTTTLLVGLYVQSRLYLGLGRDGLLPSIFAKVHPKRHTPVHS 394
S+GLK+VS+LIS GAVAGLTTTLLVGLYVQSRLYLGLGRDGLLP IFAKVHPKRHTP+HS
Sbjct: 318 SKGLKFVSILISVGAVAGLTTTLLVGLYVQSRLYLGLGRDGLLPLIFAKVHPKRHTPIHS 377
Query: 395 QVWVGIVAGILAGLFNVRVLSHILSVGTLTGYSVVSACVIALRWKDRTSRNDSSRLTSAW 454
Q+WVG+VA +LAGLFNV VLSHILSVGTLTGYSVVSACV+ LRWKD+T+ SS SA
Sbjct: 378 QIWVGLVASVLAGLFNVHVLSHILSVGTLTGYSVVSACVVVLRWKDKTNSQVSS---SAE 434
Query: 455 RQGVICLIIIACCGFGAGLFYRINASYILLIVAVVIAVLASAMLCLRHGYSDPPGFSCPG 514
R+GVICLI +A CGF +GL YR +AS+I LI+A+VIA ASA L R GY+D PGFSCPG
Sbjct: 435 REGVICLIAVALCGFASGLLYRYDASFIFLILALVIAAGASAALVFRQGYADAPGFSCPG 494
Query: 515 VPLLPAVSIFFNLFLFAQLHYEAWWRFVILSFISIGLYAFYGQYHADPSSDTIVYHRVAV 574
VPLLP + IFFN+FLFAQLH+EAW RFVIL + +G+YA YGQYHA+PS++ VYHR
Sbjct: 495 VPLLPNICIFFNMFLFAQLHHEAWVRFVILCVVMVGVYAIYGQYHANPSAEENVYHRAPE 554
Query: 575 AEA 577
EA
Sbjct: 555 EEA 557
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356567014|ref|XP_003551718.1| PREDICTED: uncharacterized amino acid permease YhdG-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 796 bits (2057), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 413/548 (75%), Positives = 471/548 (85%), Gaps = 8/548 (1%)
Query: 33 HFWSSALRAKTLTAPS---VRTNDGEGLLRRLGLFELVLIGVGASVGAGIFVVTGTVARD 89
FWSSALR+K L +P+ R + GL RRLG+ +LVL+G+GAS+GAGIFVVTGTVARD
Sbjct: 17 RFWSSALRSKRLMSPAEKAARESSDLGLSRRLGVLDLVLLGIGASIGAGIFVVTGTVARD 76
Query: 90 AGPGVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNELTAFLVFAQLMLD 149
AGPGVTISF+LAGA+ V+NALCYAELA+RFPAVVGGAYLYAYTAFNELTAFLVF QLMLD
Sbjct: 77 AGPGVTISFILAGASCVINALCYAELATRFPAVVGGAYLYAYTAFNELTAFLVFGQLMLD 136
Query: 150 YHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLT 209
YHIGAASIARSLASY+++ILELFP FK+NIP WIGHG E +G LSIN+LAPILL LLT
Sbjct: 137 YHIGAASIARSLASYLINILELFPVFKDNIPKWIGHG--EDIGDVLSINVLAPILLVLLT 194
Query: 210 IVLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEVDVSNWSPFAPNGFKEILTGATVVF 269
+LC GV ESSV+NS MTV K+IIVI+VIFAGAFEVDVSNWSPFAPNG K I TGATVVF
Sbjct: 195 FILCRGVQESSVVNSLMTVTKIIIVIIVIFAGAFEVDVSNWSPFAPNGLKAIFTGATVVF 254
Query: 270 FAYVGFDAVANSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLDEDAPL 329
FAYVGFDAVANSAEESK+PQRDLPIGI+GSLLIC ALY+GV LV+TGMVPY L EDAPL
Sbjct: 255 FAYVGFDAVANSAEESKRPQRDLPIGIIGSLLICIALYIGVCLVITGMVPYNLLGEDAPL 314
Query: 330 SDAFASRGLKYVSVLISFGAVAGLTTTLLVGLYVQSRLYLGLGRDGLLPSIFAKVHPKRH 389
++AF+S+GLK+VS+LIS GAVAGLTTTLLVGLYVQSRLYLGLGRDGLLP +FAKVH K H
Sbjct: 315 AEAFSSKGLKFVSILISVGAVAGLTTTLLVGLYVQSRLYLGLGRDGLLPLVFAKVHSKYH 374
Query: 390 TPVHSQVWVGIVAGILAGLFNVRVLSHILSVGTLTGYSVVSACVIALRWKDRTSRNDSSR 449
TPVHSQ+WVG+VA +LAGLFNV VLSHILSVGTLTGYSVVSACV+ LRWKD+T+ SS
Sbjct: 375 TPVHSQIWVGLVASVLAGLFNVHVLSHILSVGTLTGYSVVSACVVVLRWKDKTNSQVSS- 433
Query: 450 LTSAWRQGVICLIIIACCGFGAGLFYRINASYILLIVAVVIAVLASAMLCLRHGYSDPPG 509
SA R+G+ICLI +A CGF +GL YR +AS+I LI+A+VIAV ASA L R Y+D PG
Sbjct: 434 --SAEREGIICLIAVALCGFASGLLYRYDASFIFLILALVIAVGASAALVFRQVYADAPG 491
Query: 510 FSCPGVPLLPAVSIFFNLFLFAQLHYEAWWRFVILSFISIGLYAFYGQYHADPSSDTIVY 569
FSCPGVPLLP + IFFN+FLFAQLH+EAW RFVIL + +G+YA YGQYHA+PS++ VY
Sbjct: 492 FSCPGVPLLPNICIFFNMFLFAQLHHEAWVRFVILCVVMVGVYAIYGQYHANPSAEENVY 551
Query: 570 HRVAVAEA 577
R EA
Sbjct: 552 QRALEEEA 559
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224067463|ref|XP_002302490.1| cationic amino acid transporter [Populus trichocarpa] gi|222844216|gb|EEE81763.1| cationic amino acid transporter [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 771 bits (1990), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 419/545 (76%), Positives = 481/545 (88%), Gaps = 11/545 (2%)
Query: 38 ALRAKTLTAPS----VRTNDGEGLLRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGPG 93
ALR K + +P V N + L+RRLGL +L+L+GVGAS+GAGIFVVTGTVARDAGPG
Sbjct: 26 ALRTKPINSPLDTILVSRNSTDALVRRLGLLDLILLGVGASIGAGIFVVTGTVARDAGPG 85
Query: 94 VTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNELTAFLVFAQLMLDYHIG 153
VT+SF+LAG + VLNALCYAELASR PAVVGGAYLY Y+AFNELTAFLVF QLM+DYHIG
Sbjct: 86 VTLSFILAGLSCVLNALCYAELASRLPAVVGGAYLYTYSAFNELTAFLVFGQLMIDYHIG 145
Query: 154 AASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLC 213
AASIARSLASYVV+ILE+FP FK+NIPSWIGHGGEEF GGTLSIN+LAP LLALLT++LC
Sbjct: 146 AASIARSLASYVVTILEMFPVFKDNIPSWIGHGGEEFFGGTLSINLLAPFLLALLTVILC 205
Query: 214 WGVGESSVLNSCMTVVKVIIVIVVIFAGAFEVDVSNWSPFAPNGFKEILTGATVVFFAYV 273
GVGESS++NS MTV+KVIIVI+VIF GAFEVDVSNWSPFAP+G KEILTGATVVFFAYV
Sbjct: 206 LGVGESSIVNSFMTVLKVIIVIIVIFVGAFEVDVSNWSPFAPHGVKEILTGATVVFFAYV 265
Query: 274 GFDAVANSAEESKKPQ------RDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLDEDA 327
GFDAVANSAEES++PQ RDLP+GI+GSL+IC ALY+GV LVLTGMVPY L EDA
Sbjct: 266 GFDAVANSAEESRRPQACSVDLRDLPLGIIGSLVICIALYIGVCLVLTGMVPYYLLGEDA 325
Query: 328 PLSDAFASRGLKYVSVLISFGAVAGLTTTLLVGLYVQSRLYLGLGRDGLLPSIFAKVHPK 387
PL++AF S+GLKYVS+LIS GAVAGLTTTLLVGLYVQSRLYLGLGRDGLLPS+F+KVHP
Sbjct: 326 PLAEAFTSKGLKYVSILISIGAVAGLTTTLLVGLYVQSRLYLGLGRDGLLPSLFSKVHPT 385
Query: 388 RHTPVHSQVWVGIVAGILAGLFNVRVLSHILSVGTLTGYSVVSACVIALRWKDRTSRNDS 447
RHTP+HSQVWVGIVAG L GLFNV VLSHILSVG LTGYSVVSACV+ALRWKD+T+ S
Sbjct: 386 RHTPIHSQVWVGIVAGTLGGLFNVHVLSHILSVGALTGYSVVSACVLALRWKDKTASQFS 445
Query: 448 SRLTSAWRQGVICLIIIACCGFGAGLFYRINASYILLIVAVVIAVLASAMLCLRHGYSDP 507
SR TSAWR+GV+C++ +ACCGF AGLFYR +AS+I L+VAVVIA+LA+A LC R Y++P
Sbjct: 446 SRWTSAWREGVLCIVTVACCGFAAGLFYRFSASFIFLVVAVVIAILATAALCCRQTYTNP 505
Query: 508 PGFSCPGVPLLPAVSIFFNLFLFAQLHYEAWWRFVILSFISIGLYAFYGQYHADPSSD-T 566
PGFSCPGVP++PAV +FFN+FLFAQLH+EAW RFV+LS I +G+YAFYGQYHA P SD +
Sbjct: 506 PGFSCPGVPIVPAVCVFFNMFLFAQLHHEAWVRFVVLSIIMVGIYAFYGQYHAKPGSDES 565
Query: 567 IVYHR 571
I+Y R
Sbjct: 566 IIYQR 570
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|18390592|ref|NP_563754.1| cationic amino acid transporter 9 [Arabidopsis thaliana] gi|75308782|sp|Q9C5D6.1|CAAT9_ARATH RecName: Full=Cationic amino acid transporter 9, chloroplastic; Flags: Precursor gi|13430818|gb|AAK26031.1|AF360321_1 unknown protein [Arabidopsis thaliana] gi|21280891|gb|AAM44938.1| unknown protein [Arabidopsis thaliana] gi|332189800|gb|AEE27921.1| cationic amino acid transporter 9 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 767 bits (1981), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 398/556 (71%), Positives = 478/556 (85%), Gaps = 9/556 (1%)
Query: 29 TCFSHFWSSALRAKTLTAPS----VRTNDGEGLLRRLGLFELVLIGVGASVGAGIFVVTG 84
T FSHF +SALR+K+L PS VR+ G+ L+RRLGLF+L+L+GVGAS+GAG+FVVTG
Sbjct: 16 TWFSHFRASALRSKSLPPPSSQTAVRSTSGDSLVRRLGLFDLILLGVGASIGAGVFVVTG 75
Query: 85 TVARDAGPGVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNELTAFLVFA 144
TVARDAGPGVTISFLLAGA+ VLNALCYAEL+SRFPAVVGGAY+Y+Y+AFNE+TAFLVF
Sbjct: 76 TVARDAGPGVTISFLLAGASCVLNALCYAELSSRFPAVVGGAYMYSYSAFNEITAFLVFV 135
Query: 145 QLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPIL 204
QLMLDYHIGAASI+RSLASY V++LELFP K +IP W+G G+E LGG LS+NILAPIL
Sbjct: 136 QLMLDYHIGAASISRSLASYAVALLELFPALKGSIPLWMG-SGKELLGGLLSLNILAPIL 194
Query: 205 LALLTIVLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEVDVSNWSPFAPNGFKEILTG 264
LALLT+VLC GV ESS +NS MT KV+IV+VVI AGAFE+DV+NWSPFAPNGFK +LTG
Sbjct: 195 LALLTLVLCQGVRESSAVNSVMTATKVVIVLVVICAGAFEIDVANWSPFAPNGFKAVLTG 254
Query: 265 ATVVFFAYVGFDAVANSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLD 324
ATVVFF+YVGFDAVANSAEESK PQRDLPIGI+GSLL+C +LY+GV LVLTGMVP+ L
Sbjct: 255 ATVVFFSYVGFDAVANSAEESKNPQRDLPIGIMGSLLVCISLYIGVCLVLTGMVPFSLLS 314
Query: 325 EDAPLSDAFASRGLKYVSVLISFGAVAGLTTTLLVGLYVQSRLYLGLGRDGLLPSIFAKV 384
EDAPL++AF+S+G+K+VS+LIS GAVAGLTTTLLVGLYVQSRLYLGLGRDGLLPSIF+++
Sbjct: 315 EDAPLAEAFSSKGMKFVSILISIGAVAGLTTTLLVGLYVQSRLYLGLGRDGLLPSIFSRI 374
Query: 385 HPKRHTPVHSQVWVGIVAGILAGLFNVRVLSHILSVGTLTGYSVVSACVIALRWKDRTSR 444
HP HTP+HSQ+W GIVAG+LAG+FNV LSHILSVGTLTGYSVV+ACV+ALR D+ R
Sbjct: 375 HPTLHTPLHSQIWCGIVAGVLAGIFNVHSLSHILSVGTLTGYSVVAACVVALRLNDKKDR 434
Query: 445 NDSSRLTSAWRQGVICLIIIACCGFGAGLFYRINASYILLIVAVVIAVLASAMLCLRHGY 504
S+R TS+W++GVICL+IIAC GFGAG+FYR +AS I ++++V +AV+ASA+L R Y
Sbjct: 435 ESSNRWTSSWQEGVICLVIIACSGFGAGVFYRFSASVIFILLSVGVAVVASAVLHYRQAY 494
Query: 505 SDP--PGFSCPGVPLLPAVSIFFNLFLFAQLHYEAWWRFVILSFISIGLYAFYGQYHADP 562
+ P GFSCPGVP++P+V IFFN+FLFAQLHYEAW RFV++S ++ +YA YGQYHADP
Sbjct: 495 ALPLGSGFSCPGVPIVPSVCIFFNIFLFAQLHYEAWIRFVVVSVLATAVYALYGQYHADP 554
Query: 563 SSDTIVYHRVAVAEAQ 578
S + Y R E+
Sbjct: 555 S--MLDYQRAPETESD 568
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|307136427|gb|ADN34234.1| cationic amino acid transporter [Cucumis melo subsp. melo] | Back alignment and taxonomy information |
|---|
Score = 756 bits (1951), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 391/529 (73%), Positives = 453/529 (85%), Gaps = 9/529 (1%)
Query: 38 ALRAKTLTAPS----VRTNDGEGLLRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGPG 93
ALR K L +PS RTN G+GL+RRLG+ +LVL+GVGAS+GAGIFVVTGTVARDAGPG
Sbjct: 26 ALRTKPLISPSDASSNRTNSGDGLVRRLGVIDLVLLGVGASIGAGIFVVTGTVARDAGPG 85
Query: 94 VTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNELTAFLVFAQLMLDYHIG 153
VTISF LAG + +LNALCYAELA+RFP VVGGAYLY Y AFNELTAFLVFAQLMLDYHIG
Sbjct: 86 VTISFTLAGVSCILNALCYAELATRFPPVVGGAYLYTYAAFNELTAFLVFAQLMLDYHIG 145
Query: 154 AASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLC 213
AASIARSLA Y++S LE+FP FK+NIPSW+G+G +E LGG +SIN+LAP+LLALLT +LC
Sbjct: 146 AASIARSLAGYIISFLEIFPLFKDNIPSWLGNG-QELLGGVISINVLAPVLLALLTFILC 204
Query: 214 WGVGESSVLNSCMTVVKVIIVIVVIFAGAFEVDVSNWSPFAPNGFKEILTGATVVFFAYV 273
WGVGESS +NS MT +KVIIV+ VI GAFEVDVSNWSPF PNGF +LTGATVVFFAYV
Sbjct: 205 WGVGESSTINSIMTSLKVIIVVCVILTGAFEVDVSNWSPFTPNGFHAVLTGATVVFFAYV 264
Query: 274 GFDAVANSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLDEDAPLSDAF 333
GFDAVANSAEESK P+RDLPIGI+GSLLIC ALY+GV LV+TGMVPY L E+APL+ AF
Sbjct: 265 GFDAVANSAEESKNPRRDLPIGIIGSLLICIALYIGVCLVITGMVPYYLLGEEAPLAAAF 324
Query: 334 ASRGLKYVSVLISFGAVAGLTTTLLVGLYVQSRLYLGLGRDGLLPSIFAKVHPKRHTPVH 393
S+GLK+VS LIS GA+AGLTTTLL+GLYVQSRLYLGLGRDGLLPS F+KVHPKRHTP+
Sbjct: 325 TSKGLKFVSFLISVGAIAGLTTTLLIGLYVQSRLYLGLGRDGLLPSFFSKVHPKRHTPII 384
Query: 394 SQVWVGIVAGILAGLFNVRVLSHILSVGTLTGYSVVSACVIALRWKDRTSRNDSSRLTSA 453
SQVWVGIVAG+LAGLFN+ LSHILSVGTLTGYSVVSACVI LRWKD+T+R SS S
Sbjct: 385 SQVWVGIVAGVLAGLFNIHSLSHILSVGTLTGYSVVSACVITLRWKDKTTRQVSS---ST 441
Query: 454 WRQGVICLIIIACCGFGAGLFYRINASYILLIVAVVIAVLASAMLCLRHGYSDPPGFSCP 513
WR+GVICLI++A GFGAG+FYR + ++ +VA ++A+LAS L LRH Y D GF CP
Sbjct: 442 WREGVICLILVAFSGFGAGVFYRYGSLWV-SVVAAILALLASIALHLRHTYGDVAGFPCP 500
Query: 514 GVPLLPAVSIFFNLFLFAQLHYEAWWRFVILSFISIGLYAFYGQYHADP 562
GVP +PA+ +F N+FLFAQLH EAW RFV++S I+I +YAFYGQ+HA+P
Sbjct: 501 GVPFVPALCVFVNMFLFAQLHQEAWVRFVVVSIITIIVYAFYGQHHANP 549
|
Source: Cucumis melo subsp. melo Species: Cucumis melo Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|115447681|ref|NP_001047620.1| Os02g0655700 [Oryza sativa Japonica Group] gi|49388207|dbj|BAD25330.1| amino acid permease-like [Oryza sativa Japonica Group] gi|49388552|dbj|BAD25671.1| amino acid permease-like [Oryza sativa Japonica Group] gi|113537151|dbj|BAF09534.1| Os02g0655700 [Oryza sativa Japonica Group] gi|218191293|gb|EEC73720.1| hypothetical protein OsI_08327 [Oryza sativa Indica Group] | Back alignment and taxonomy information |
|---|
Score = 754 bits (1946), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 401/574 (69%), Positives = 466/574 (81%), Gaps = 10/574 (1%)
Query: 4 ENVQIEKSNNNSSSSSSPSASGPPPTCFSHFWSSALRAKTLTAPSVRTNDGEGLLRRLGL 63
E E+ ++ SSS G S ++ALR K ++A + GEGL+R+LG+
Sbjct: 32 EAAMEEEGADHRPPSSSSGGRG----FLSGLCAAALRRKPISAHAAHAASGEGLVRQLGV 87
Query: 64 FELVLIGVGASVGAGIFVVTGTVARDAGPGVTISFLLAGAASVLNALCYAELASRFPAVV 123
FELVL+G+GAS+GAGIFVVTGTVARDAGPGVTISF+LAGAA VLNALCYAELASRFPAVV
Sbjct: 88 FELVLLGIGASIGAGIFVVTGTVARDAGPGVTISFVLAGAACVLNALCYAELASRFPAVV 147
Query: 124 GGAYLYAYTAFNELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWI 183
GGAYLY Y AFNELTAFLVF QLMLDYHIGAASIARSLASY V LEL PF K +IP+WI
Sbjct: 148 GGAYLYTYAAFNELTAFLVFTQLMLDYHIGAASIARSLASYFVQFLELIPFLKGHIPTWI 207
Query: 184 GHGGEEFLGGTLSINILAPILLALLTIVLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAF 243
GHG EEF GG +S+NILAPILL +LT +LC+GV ESS +N+ MT +K++IVIVV+FAG F
Sbjct: 208 GHG-EEFFGGVVSVNILAPILLIILTTILCYGVKESSAVNTFMTTLKIVIVIVVVFAGVF 266
Query: 244 EVDVSNWSPFAPNGFKEILTGATVVFFAYVGFDAVANSAEESKKPQRDLPIGILGSLLIC 303
EVDVSNWSPF PNGFK ++TGATVVFFAYVGFDAVANSAEE+KKPQRDLPIGILGSLL C
Sbjct: 267 EVDVSNWSPFMPNGFKSVVTGATVVFFAYVGFDAVANSAEEAKKPQRDLPIGILGSLLAC 326
Query: 304 AALYVGVSLVLTGMVPYKFLDEDAPLSDAFASRGLKYVSVLISFGAVAGLTTTLLVGLYV 363
LYV V LV+TGMVPY L EDAPL++AFA++GLK+V+VLIS GAVAGLTTTLLVGLYV
Sbjct: 327 VLLYVAVCLVITGMVPYTLLGEDAPLAEAFAAKGLKFVTVLISIGAVAGLTTTLLVGLYV 386
Query: 364 QSRLYLGLGRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGILAGLFNVRVLSHILSVGTL 423
QSRLYLGLGRDGLLPSIFAKVHP RHTP+HSQ+WVG VA +LAGLFNV LSHILSVGTL
Sbjct: 387 QSRLYLGLGRDGLLPSIFAKVHPTRHTPLHSQIWVGCVAAVLAGLFNVHELSHILSVGTL 446
Query: 424 TGYSVVSACVIALRWKDRTSRNDSSRLTSAWRQGVICLIIIACCGFGAGLFYRINASYIL 483
TGYSVVSACVI LRW D+T+ S S W++GV+CL+IIA CGF AG+ YR + +
Sbjct: 447 TGYSVVSACVITLRWNDKTTSCRSLGNMSIWQEGVLCLVIIALCGFVAGMCYRFSYAIAF 506
Query: 484 LIVAVVIAVLASAMLCLRHGYSDPPGFSCPGVPLLPAVSIFFNLFLFAQLHYEAWWRFVI 543
+I+A++IAV A L R Y DPPGFSCPGVP++P VS+FFN+ LFAQLH EAW+RFVI
Sbjct: 507 MIIALLIAVAAGFALQFRQVYVDPPGFSCPGVPIVPMVSVFFNMLLFAQLHEEAWYRFVI 566
Query: 544 LSFISIGLYAFYGQYHADPSSD-----TIVYHRV 572
LS +++G+YA YGQYHA PSS + YH +
Sbjct: 567 LSLLAVGVYAGYGQYHAVPSSSDHPHPAVAYHGI 600
|
Source: Oryza sativa Japonica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 578 | ||||||
| TAIR|locus:2198861 | 569 | CAT9 "cationic amino acid tran | 0.944 | 0.959 | 0.601 | 3.7e-174 | |
| DICTYBASE|DDB_G0279983 | 766 | ctrB "solute carrier family 7 | 0.645 | 0.486 | 0.358 | 4.7e-68 | |
| TAIR|locus:2167462 | 609 | CAT3 "cationic amino acid tran | 0.626 | 0.594 | 0.338 | 1.3e-65 | |
| TAIR|locus:2196245 | 635 | CAT2 "cationic amino acid tran | 0.628 | 0.571 | 0.334 | 3.3e-63 | |
| DICTYBASE|DDB_G0291201 | 546 | ctrC "solute carrier family 7 | 0.833 | 0.882 | 0.306 | 1e-61 | |
| WB|WBGene00016806 | 589 | C50D2.2 [Caenorhabditis elegan | 0.693 | 0.680 | 0.337 | 4.2e-61 | |
| MGI|MGI:2146512 | 635 | Slc7a4 "solute carrier family | 0.714 | 0.650 | 0.327 | 4.8e-60 | |
| TIGR_CMR|BA_0818 | 467 | BA_0818 "amino acid permease f | 0.731 | 0.905 | 0.354 | 1e-59 | |
| UNIPROTKB|F1P388 | 624 | SLC7A1 "Uncharacterized protei | 0.323 | 0.299 | 0.390 | 3.6e-59 | |
| UNIPROTKB|O43246 | 635 | SLC7A4 "Cationic amino acid tr | 0.629 | 0.573 | 0.335 | 5.4e-59 |
| TAIR|locus:2198861 CAT9 "cationic amino acid transporter 9" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1692 (600.7 bits), Expect = 3.7e-174, P = 3.7e-174
Identities = 334/555 (60%), Positives = 400/555 (72%)
Query: 29 TCFSHFWSSALRAKTLTAPS----VRTNDXXXXXXXXXXXXXXXIGVGASVGAGIFVVTG 84
T FSHF +SALR+K+L PS VR+ +GVGAS+GAG+FVVTG
Sbjct: 16 TWFSHFRASALRSKSLPPPSSQTAVRSTSGDSLVRRLGLFDLILLGVGASIGAGVFVVTG 75
Query: 85 TVARDAGPGVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNELTAFLVFA 144
TVARDAGPGVTISFLLAGA+ VLNALCYAEL+SRFPAVVGGAY+Y+Y+AFNE+TAFLVF
Sbjct: 76 TVARDAGPGVTISFLLAGASCVLNALCYAELSSRFPAVVGGAYMYSYSAFNEITAFLVFV 135
Query: 145 QLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTXXXXXXXXXX 204
QLMLDYHIGAASI+RSLASY V++LELFP K +IP W+G G+E LGG
Sbjct: 136 QLMLDYHIGAASISRSLASYAVALLELFPALKGSIPLWMG-SGKELLGGLLSLNILAPIL 194
Query: 205 XXXXXXXXCWGVGESSVLNSCMTXXXXXXXXXXXFAGAFEVDVSNWSPFAPNGFKEILTG 264
C GV ESS +NS MT AGAFE+DV+NWSPFAPNGFK +LTG
Sbjct: 195 LALLTLVLCQGVRESSAVNSVMTATKVVIVLVVICAGAFEIDVANWSPFAPNGFKAVLTG 254
Query: 265 ATVVFFAYVGFDAVANSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLD 324
ATVVFF+YVGFDAVANSAEESK PQRDLPIGI+GSLL+C +LY+GV LVLTGMVP+ L
Sbjct: 255 ATVVFFSYVGFDAVANSAEESKNPQRDLPIGIMGSLLVCISLYIGVCLVLTGMVPFSLLS 314
Query: 325 EDAPLSDAFASRGLKYVSVLISFXXXXXXXXXXXXXXYVQSXXXXXXXXXXXXPSIFAKV 384
EDAPL++AF+S+G+K+VS+LIS YVQS PSIF+++
Sbjct: 315 EDAPLAEAFSSKGMKFVSILISIGAVAGLTTTLLVGLYVQSRLYLGLGRDGLLPSIFSRI 374
Query: 385 HPKRHTPVHSQVWVGIVAGILAGLFNVRVLSHILSVGTLTGYSVVSACVIALRWKDRTSR 444
HP HTP+HSQ+W GIVAG+LAG+FNV LSHILSVGTLTGYSVV+ACV+ALR D+ R
Sbjct: 375 HPTLHTPLHSQIWCGIVAGVLAGIFNVHSLSHILSVGTLTGYSVVAACVVALRLNDKKDR 434
Query: 445 NDSSRLTSAWRQGVICLIIIACCGFGAGLFYRINASYXXXXXXXXXXXXXSAMLCLRHGY 504
S+R TS+W++GVICL+IIAC GFGAG+FYR +AS SA+L R Y
Sbjct: 435 ESSNRWTSSWQEGVICLVIIACSGFGAGVFYRFSASVIFILLSVGVAVVASAVLHYRQAY 494
Query: 505 SDP--PGFSCPGVPLLPAVSIFFNLFLFAQLHYEAWWRFVILSFISIGLYAFYGQYHADP 562
+ P GFSCPGVP++P+V IFFN+FLFAQLHYEAW RFV++S ++ +YA YGQYHADP
Sbjct: 495 ALPLGSGFSCPGVPIVPSVCIFFNIFLFAQLHYEAWIRFVVVSVLATAVYALYGQYHADP 554
Query: 563 SSDTIVYHRVAVAEA 577
S + Y R E+
Sbjct: 555 SM--LDYQRAPETES 567
|
|
| DICTYBASE|DDB_G0279983 ctrB "solute carrier family 7 member protein" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 596 (214.9 bits), Expect = 4.7e-68, Sum P(2) = 4.7e-68
Identities = 137/382 (35%), Positives = 196/382 (51%)
Query: 70 GVGASVGAGIFVVTGTVARD-AGPGVTISFLLAGAASVLNALCYAELASRFPAVVGGAYL 128
GVG+ +GAGIFV+TG A + AGP + IS+L+AG L+ LCYAE ASR P G Y
Sbjct: 96 GVGSIIGAGIFVLTGYAAHEKAGPAIVISYLVAGICCGLSGLCYAEFASRIPCS-GSTYS 154
Query: 129 YAYTAFNELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGE 188
Y+Y EL A++V L L+Y I +AS+ R + Y+ SI+ +P I
Sbjct: 155 YSYIMVGELIAWIVGWDLTLEYMIASASVGRGWSGYLGSIINSSG---GKLPHPIA---P 208
Query: 189 EFLGGTXXXXXXXXXXXXXXXXXXCWGVGESSVLNSCMTXXXXXXXXXXXFAGAFEVDVS 248
+L G+ ES+ N G+ D S
Sbjct: 209 VYLADGFSVDIIAFLSIMILSLIIAMGMKESARFNKIFVVIKIAIIIFVIVLGSVYADTS 268
Query: 249 NWSPFAPNGFKEILTGATVVFFAYVGFDAVANSAEESKKPQRDLPIGILGSLLICAALYV 308
NW FAP G K I A + FFAY+GFD V N AEE + PQRDLPIGILGSL I LY+
Sbjct: 269 NWDNFAPYGAKGIFNAAAITFFAYLGFDGVCNVAEEVENPQRDLPIGILGSLGISTVLYI 328
Query: 309 GVSLVLTGMVPYKFLDEDAPLSDAFASRGLKYVSVLISFXXXXXXXXXXXXXXYVQSXXX 368
G + VLT +VPY +D +APLS AF + GLK+ S++++ Q
Sbjct: 329 GTAGVLTLLVPYHLIDVEAPLSVAFDNIGLKWASIIVAIGAFAGLTTAQLGGLISQPRLY 388
Query: 369 XXXXXXXXXPSIFAKVHPKRHTPVHSQVWVGIVAGILAGLFNVRVLSHILSVGTLTGYSV 428
P F ++HP+ TP ++ ++ G+ ++ N+ +L+ ++S+GTL +++
Sbjct: 389 YSLSRDGLLPKWFGEIHPRFKTPFNATMFTGVCCATISLFVNIDILADMVSIGTLLSFTL 448
Query: 429 VSACVIALRW-KDRTSRNDSSR 449
VS CV+ LR+ K RT ++R
Sbjct: 449 VSTCVLILRYPKPRTISESTAR 470
|
|
| TAIR|locus:2167462 CAT3 "cationic amino acid transporter 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 561 (202.5 bits), Expect = 1.3e-65, Sum P(2) = 1.3e-65
Identities = 128/378 (33%), Positives = 206/378 (54%)
Query: 69 IGVGASVGAGIFVVTGTVARD-AGPGVTISFLLAGAASVLNALCYAELASRFPAVVGGAY 127
IGVG+++GAG++++ GTVAR+ +GP + +SFL+AG ++ L+A CYAEL+SRFP+ G AY
Sbjct: 41 IGVGSTIGAGVYILVGTVAREHSGPALALSFLIAGISAALSAFCYAELSSRFPSA-GSAY 99
Query: 128 LYAYTAFNELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKEN-IPSWIGHG 186
Y+Y E A+L+ L+L+Y IG +++AR ++ + I F E+ +P+ +
Sbjct: 100 HYSYICIGEGVAWLIGWALILEYTIGGSTVARGISPNLAMI-----FGGEDCLPTILAR- 153
Query: 187 GEEFLGGTXXXXXXXXXXXXXXXXXXCWGVGESSVLNSCMTXXXXXXXXXXXFAGAFEVD 246
+ G C GV ES+ +T AG++
Sbjct: 154 -HQIPGLDIVVDPCAAVLVFIVTGLCCLGVKESTFAQGIVTTANVFVMIFVIVAGSYLCF 212
Query: 247 VSNW------SPFAPNGFKEILTGATVVFFAYVGFDAVANSAEESKKPQRDLPIGILGSL 300
+ W + + P G +LTG+ VFFAY+GFD VA+ AEE K P+RDLP+GI SL
Sbjct: 213 KTGWVGYELPTGYFPYGVDGMLTGSATVFFAYIGFDTVASMAEEVKNPRRDLPLGIGISL 272
Query: 301 LICAALYVGVSLVLTGMVPYKFLDEDAPLSDAFASRGLKYVSVLISFXXXXXXXXXXXXX 360
L+C LY+ VS+V+ G+VPY +D D P+S AF+S G+++ + LI+
Sbjct: 273 LLCCLLYMMVSVVIVGLVPYYAMDPDTPISSAFSSHGIQWAAYLINLGAVMALCSALMGS 332
Query: 361 XYVQSXXXXXXXXXXXXPSIFAKVHPKRHTPVHSQVWVGIVAGILAGLFNVRVLSHILSV 420
Q PS F+ V+ + P++ + G+ A ILA +V L+ ++SV
Sbjct: 333 ILPQPRILMAMARDGLLPSYFSYVNQRTQVPINGTITTGVCAAILAFFMDVSQLAGMVSV 392
Query: 421 GTLTGYSVVSACVIALRW 438
GTL +++V+ ++ +R+
Sbjct: 393 GTLVAFTMVAISLLIVRY 410
|
|
| TAIR|locus:2196245 CAT2 "cationic amino acid transporter 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 542 (195.9 bits), Expect = 3.3e-63, Sum P(2) = 3.3e-63
Identities = 126/377 (33%), Positives = 203/377 (53%)
Query: 69 IGVGASVGAGIFVVTGTVARD-AGPGVTISFLLAGAASVLNALCYAELASRFPAVVGGAY 127
IGVGA++GAG++++ GTVAR+ +GP + +SFL+AG A+ L+A CYAEL+SR P+ G AY
Sbjct: 52 IGVGATIGAGVYILVGTVAREHSGPSLALSFLIAGIAAGLSAFCYAELSSRCPSA-GSAY 110
Query: 128 LYAYTAFNELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGG 187
Y+Y E A+++ L+L+Y IG +++AR ++ + I ++ +P+ +
Sbjct: 111 HYSYICVGEGVAWIIGWALILEYTIGGSAVARGISPNLALIFG----GEDGLPAILAR-- 164
Query: 188 EEFLGGTXXXXXXXXXXXXXXXXXXCWGVGESSVLNSCMTXXXXXXXXXXXFAGAFEVDV 247
+ G C G+ ES+ +T AG++
Sbjct: 165 HQIPGLDIVVDPCAAILVFVVTGLLCMGIKESTFAQGIVTAVNVCVLLFVIVAGSYLGFK 224
Query: 248 SNWS----P--FAPNGFKEILTGATVVFFAYVGFDAVANSAEESKKPQRDLPIGILGSLL 301
+ W P F P G + G+ VFFA++GFD+VA++AEE + PQRDLPIGI +LL
Sbjct: 225 TGWPGYELPTGFFPFGVDGMFAGSATVFFAFIGFDSVASTAEEVRNPQRDLPIGIGLALL 284
Query: 302 ICAALYVGVSLVLTGMVPYKFLDEDAPLSDAFASRGLKYVSVLISFXXXXXXXXXXXXXX 361
+C +LY+ VS+V+ G++PY +D D P+S AFAS +++ LI+
Sbjct: 285 LCCSLYMMVSIVIVGLIPYYAMDPDTPISSAFASHDMQWAVYLITLGAVMALCSALMGAL 344
Query: 362 YVQSXXXXXXXXXXXXPSIFAKVHPKRHTPVHSQVWVGIVAGILAGLFNVRVLSHILSVG 421
Q PSIF+ ++ + PV + V G+ A LA +V L+ ++SVG
Sbjct: 345 LPQPRILMAMARDGLLPSIFSDINKRTQVPVKATVATGLCAATLAFFMDVSQLAGMVSVG 404
Query: 422 TLTGYSVVSACVIALRW 438
TL +++V+ V+ LR+
Sbjct: 405 TLLAFTMVAISVLILRY 421
|
|
| DICTYBASE|DDB_G0291201 ctrC "solute carrier family 7 member protein" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 631 (227.2 bits), Expect = 1.0e-61, P = 1.0e-61
Identities = 154/503 (30%), Positives = 250/503 (49%)
Query: 70 GVGASVGAGIFVVTG-TVARDAGPGVTISFLLAGAASVLNALCYAELASRFPAVVGGAYL 128
G+G++VGAG+FV G +A AGPG +SFL + A +++A CY+E ++R P V G AY
Sbjct: 54 GIGSTVGAGVFVSIGIAIATKAGPGTLLSFLFSAIACLISAFCYSEFSARIP-VSGSAYT 112
Query: 129 YAYTAFNELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWI-GHGG 187
+AY + E + V L L+Y I A+++AR Y I ++F KE P WI G+
Sbjct: 113 FAYVSLGEFMGWFVGWNLTLEYAISASAVARGWVGYFQVIFKIFG--KE-APQWISGYSI 169
Query: 188 EEFLGGTXXXXXXXXXXXXXXXXXXCWGVGESSVLNSCMTXXXXXXXXXXXFAGAFEVDV 247
E++ +G+ +S+ N +T G+ VD
Sbjct: 170 NEWIN----INPVAPVIIVICTIILVFGIKDSARFNMAITAINLLTITFFIILGSIHVDR 225
Query: 248 SNWSPFAPNGFKEILTGATVVFFAYVGFDAVANSAEESKKPQRDLPIGILGSLLICAALY 307
SNW+PF P G + +G +VVFF+YVGFD+V A E K P+RDLPIGI+G+L+I LY
Sbjct: 226 SNWTPFLPFGMTGVFSGCSVVFFSYVGFDSVTTLAGEVKNPKRDLPIGIVGTLVIATTLY 285
Query: 308 VGVSLVLTGMVPYKFLDEDAPLSDAFASRGL--KYVSVLISFXXXXXXXXXXXXXXYVQS 365
+GV+LVL+GMV Y + + +PLSDAF GL K+ +++I+ Q
Sbjct: 286 IGVTLVLSGMVNYLDVSQGSPLSDAFIGNGLDMKWAAMIIACGTLTSLTASTLCSLLGQP 345
Query: 366 XXXXXXXXXXXXPSIFAKVHPKRHTPVHSQVWVGIVAGILAGLFNVRVLSHILSVGTLTG 425
F ++ K+ PV V+ G+ A ILA + ++ L++++S+GTL
Sbjct: 346 RIYLQMAKDGLFFEKFTSMN-KKQVPVFGTVFTGVFASILAIVLDLDNLTNMISIGTLLA 404
Query: 426 YSVVSACVIALRWKDRTSRNDSSRLTSAWRQGVICLIIIACCGFGAGLFYRINASYXXXX 485
++ V A V+ +R++ D SA+ ++ ++ + C FG + ++ +
Sbjct: 405 FTAVCAGVVVMRFRREDGGEDG--FPSAF---ILLILFVFACVFG--ISSKLGWNMWIQI 457
Query: 486 XXXXXXXXXSAMLCLRHGYSDPPGFSCPGVPLLPAVSIFFNLFLFAQLHYEAWWRFVILS 545
++ L+ + P F CP P+LP + I N F L +++R +
Sbjct: 458 ALGACQAVIIGLVWLKKQINIPTSFRCPFNPILPCLGIVVNTFFIMHLDTPSFYRVAAWT 517
Query: 546 FISIGLYAFYGQYHADPSS-DTI 567
+ +Y YG H+ + DT+
Sbjct: 518 ALGSSIYFIYGIRHSKLNQLDTV 540
|
|
| WB|WBGene00016806 C50D2.2 [Caenorhabditis elegans (taxid:6239)] | Back alignment and assigned GO terms |
|---|
Score = 536 (193.7 bits), Expect = 4.2e-61, Sum P(2) = 4.2e-61
Identities = 142/421 (33%), Positives = 195/421 (46%)
Query: 30 CFSHFWSSALRAKTLTAPSVRTNDXXXXXXXXXXXXXXXIGVGASVGAGIFVVTGTVARD 89
CFS R K L A + T +GVG +GAGI+V+TG+V R+
Sbjct: 2 CFSALRERVFRLKNLPAGEIATP----LRRCLSTFDITLLGVGHMIGAGIYVLTGSVVRN 57
Query: 90 -AGPGVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNELTAFLVFAQLML 148
AGP + +SFLLAG AS+L+ALCYAE +RFP G AY Y Y EL AF++ ++L
Sbjct: 58 TAGPSIILSFLLAGFASLLSALCYAEFGARFPKA-GSAYTYTYVGVGELWAFVIGWNIIL 116
Query: 149 DYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGE--EFLGGTXXXXXXXXXXXX 206
++ +GAA++ARS + Y+ S+L + + GH E F G
Sbjct: 117 EHMLGAAAVARSWSGYLDSLLG--NVISNSTIARTGHLHEASSFFGDYPDLLAFLLIVLV 174
Query: 207 XXXXXXCWGVGESSVLNSCMTXXXXXXXXXXXFAGAFEVDVSNWSP--------FAPNGF 258
G S+ NS +T F G D S WS F P G
Sbjct: 175 AFFVAL--GSKVSTNFNSFLTILNIGIVVIVVFYGITFADFSLWSGVDEKGNSRFFPYGV 232
Query: 259 KEILTGATVVFFAYVGFDAVANSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMV 318
+ GA FFAY+GFD +A + EE+K P R +PI S+ I YV +S LT M+
Sbjct: 233 SGMFAGAASCFFAYIGFDGLATAGEEAKDPARSIPIATFSSMTIVTLSYVLMSASLTLMI 292
Query: 319 PYKFLDEDAPLSDAFASRGLKYVSVLISFXXXXXXXXXXXXXXYVQSXXXXXXXXXXXXP 378
PY + A SDAF RG ++ S +S +
Sbjct: 293 PYNMVHPTAAFSDAFTMRGAEFASYAVSVGALFGMTTSLVGGMFALPRCVFSMADDGLLF 352
Query: 379 SIFAKVHPKRHTPVHSQVWVGIVAGILAGLFNVRVLSHILSVGTLTGYSVVSACVIALRW 438
S A V+PK P + + G + I+A LF++ L LS+GTL YS+VSACVI LR+
Sbjct: 353 SSLASVNPKTQVPTQALLIFGFLTAIIALLFDITTLVEFLSIGTLLAYSIVSACVIVLRY 412
Query: 439 K 439
+
Sbjct: 413 Q 413
|
|
| MGI|MGI:2146512 Slc7a4 "solute carrier family 7 (cationic amino acid transporter, y+ system), member 4" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 529 (191.3 bits), Expect = 4.8e-60, Sum P(2) = 4.8e-60
Identities = 140/428 (32%), Positives = 203/428 (47%)
Query: 30 CFSHFWSSALRAKTLTAPSVRTNDXXXXXXXXXXXXXXXIGVGASVGAGIFVVTGTVARD 89
C + F R K L S+ T+ +GVG VG+G++V+TGTVA+D
Sbjct: 10 CLARFCQKLNRLKPLEESSMETS----LRRCLSTLDLTLLGVGGMVGSGLYVLTGTVAKD 65
Query: 90 -AGPGVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNELTAFLVFAQLML 148
AGP V +SFL+A AS+L ALCYAE +R P G AYL+ Y + E+ AFL+ ++L
Sbjct: 66 MAGPAVLLSFLVAAVASLLAALCYAEFGARVPRT-GSAYLFTYVSMGEIWAFLIGWNVLL 124
Query: 149 DYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTXXXXXXXXXXXXXX 208
+Y IG A++AR+ + Y+ +I + S +G FL
Sbjct: 125 EYLIGGAAVARAWSGYLDAIFN--HSIRNFTESHLGVWQVPFLAH-YPDFLAAGILLVAS 181
Query: 209 XXXXCWGVGESSVLNSCMTXXXXXXXXXXXFAGAFEVDVSNWSP----FAPNGFKEILTG 264
C G SS LN + G NWS FAP GF IL G
Sbjct: 182 AFVSC-GARVSSWLNHTFSAISLIVILFIIVLGFILARPHNWSAEEGGFAPFGFSGILAG 240
Query: 265 ATVVFFAYVGFDAVANSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLD 324
F+A+VGFD +A S+EE+K P+ +P+ I SL + A Y+ VS VLT MVP+ LD
Sbjct: 241 TATCFYAFVGFDVIAASSEEAKNPRWAVPMAIAISLSLAAGAYILVSTVLTLMVPWHSLD 300
Query: 325 EDAPLSDAFASRGLKYVSVLISFXXXXXXXXXXXXXXYVQSXXXXXXXXXXXXPSIFAKV 384
D+ L+DAF RG + +++ + +FA+V
Sbjct: 301 PDSALADAFYRRGYSWAGFIVAVGSICAMNTVLLSNLFSLPRIVYAMAADGLFFQVFARV 360
Query: 385 HPKRHTPVHSQVWVGIVAGILAGLFNVRVLSHILSVGTLTGYSVVSACVIALRWKDRTSR 444
HP+ PV + G++ +LA L ++ L LS+GTL Y+ V+ +I LR++ + S
Sbjct: 361 HPRTQVPVVGILVFGVLMALLALLLDLEALVQFLSIGTLLAYTFVATSIIVLRFQ-KASP 419
Query: 445 NDSSRLTS 452
S L S
Sbjct: 420 PSSPCLAS 427
|
|
| TIGR_CMR|BA_0818 BA_0818 "amino acid permease family protein" [Bacillus anthracis str. Ames (taxid:198094)] | Back alignment and assigned GO terms |
|---|
Score = 612 (220.5 bits), Expect = 1.0e-59, P = 1.0e-59
Identities = 158/446 (35%), Positives = 225/446 (50%)
Query: 37 SALRAKTLTAPSVRTNDXXXXXXXXXXXXXXXIGVGASVGAGIFVVTGTVA-RDAGPGVT 95
S LR K L+ S R +G+GA +G GIFV+TG VA + +GPG+
Sbjct: 3 SLLRKKALSTESPRQ-----LQRTLTALDLTFLGIGAVIGTGIFVLTGIVAAKHSGPGIM 57
Query: 96 ISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNELTAFLVFAQLMLDYHIGAA 155
+SFL+A A CYAE AS P V G Y YAY E+ AF+V LML+Y + A
Sbjct: 58 LSFLIAAFTCACVAFCYAEFASSIP-VSGSVYTYAYMTVGEVVAFIVGWCLMLEYLLAVA 116
Query: 156 SIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTXXXXXXXXXXXXXXXXXXCWG 215
++A + Y+ S+L+ F ++P+ I GG +G
Sbjct: 117 AVAVGWSGYLQSLLQGFNI---HLPAIIASAPGVGKGGLIDLPAVCILLIITVLLS--FG 171
Query: 216 VGESSVLNSCMTXXXXXXXXXXXFAGAFEVDVSNWSPFAPNGFKEILTGATVVFFAYVGF 275
+ ES+ +N+ M AGA V NW+PF P G+ I+TGA VFFA++GF
Sbjct: 172 IRESARINNIMVLIKLAVIIAFIVAGAKYVKPENWTPFIPFGYDGIITGAATVFFAFLGF 231
Query: 276 DAVANSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLDEDAPLSDAFAS 335
DA+A +AEE+KKPQRDLPIGI+GSLLIC LY+ VS VLTGMVPY LD P++ A
Sbjct: 232 DAIATAAEETKKPQRDLPIGIIGSLLICTVLYMIVSFVLTGMVPYTQLDVSDPVAFALHF 291
Query: 336 RGLKYVSVLISFXXXXXXXXXXXXXXYVQSXXXXXXXXXXXXPSIFAKVHPKRHTPVHSQ 395
G ++ L++ Y Q P A+V+ + P+ +
Sbjct: 292 VGEDTIAGLLAVGAMTGMTTVLLVVMYGQVRVSYAMSRDGLLPKALARVNKRVKIPLLN- 350
Query: 396 VWV-GIVAGILAGLFNVRVLSHILSVGTLTGYSVVSACVIALRWKDRTSRNDSSRLTSAW 454
W+ G+VA +LAGL ++ VL++++++GTLT ++ V V+ LR K R
Sbjct: 351 TWITGVVAALLAGLLDLHVLANLVNIGTLTAFTFVCCAVLILR-KTHPDLKRGFRTPFV- 408
Query: 455 RQGVICLIIIACCGFGAGLFYRINAS 480
V+ ++ I CC L+ IN S
Sbjct: 409 --PVLPVVAILCC-----LYLMINLS 427
|
|
| UNIPROTKB|F1P388 SLC7A1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 337 (123.7 bits), Expect = 3.6e-59, Sum P(4) = 3.6e-59
Identities = 73/187 (39%), Positives = 104/187 (55%)
Query: 253 FAPNGFKEILTGATVVFFAYVGFDAVANSAEESKKPQRDLPIGILGSLLICAALYVGVSL 312
F P G K +L+GA F+A+VGFD +A + EE K PQ+ +PIGI+ SLLIC Y GVS
Sbjct: 248 FMPYGLKGVLSGAATCFYAFVGFDCIATTGEEVKNPQKAIPIGIVASLLICFVAYFGVSA 307
Query: 313 VLTGMVPYKFLDEDAPLSDAFASRGLKYVSVLISFXXXXXXXXXXXXXXYVQSXXXXXXX 372
LT M+PY LD ++PL +AF G + ++ +
Sbjct: 308 ALTLMMPYYQLDTNSPLPNAFKYVGWDGANYAVAVGSLCALSTSLLGSMFPMPRIIYAMA 367
Query: 373 XXXXXPSIFAKVHPKRHTPVHSQVWVGIVAGILAGLFNVRVLSHILSVGTLTGYSVVSAC 432
AKV+ KR TPV + V G VA I+A LF+++ L ++S+GTL YS+V+AC
Sbjct: 368 EDGLLFKFLAKVNDKRKTPVIATVTSGAVAAIMAFLFDLKDLVDLMSIGTLLAYSLVAAC 427
Query: 433 VIALRWK 439
V+ LR++
Sbjct: 428 VLVLRYQ 434
|
|
| UNIPROTKB|O43246 SLC7A4 "Cationic amino acid transporter 4" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 521 (188.5 bits), Expect = 5.4e-59, Sum P(2) = 5.4e-59
Identities = 127/378 (33%), Positives = 190/378 (50%)
Query: 69 IGVGASVGAGIFVVTGTVARD-AGPGVTISFLLAGAASVLNALCYAELASRFPAVVGGAY 127
+GVG VG+G++V+TG VA++ AGP V +SF +A AS+L ALCYAE +R P G AY
Sbjct: 45 LGVGGMVGSGLYVLTGAVAKEVAGPAVLLSFGVAAVASLLAALCYAEFGARVPRT-GSAY 103
Query: 128 LYAYTAFNELTAFLVFAQLMLDYHIGAASIARSLASYVVSILE--LFPFFKENIPSWIGH 185
L+ Y + EL AFL+ ++L+Y IG A++AR+ + Y+ S+ + F + ++ SW
Sbjct: 104 LFTYVSMGELWAFLIGWNVLLEYIIGGAAVARAWSGYLDSMFSHSIRNFTETHVGSW--- 160
Query: 186 GGEEFLGGTXXXXXXXXXXXXXXXXXXCWGVGESSVLNSCMTXXXXXXXXXXXFAGAFEV 245
+ L G C G SS LN + G
Sbjct: 161 --QVPLLGHYPDFLAAGIILLASAFVSC-GARVSSWLNHTFSAISLLVILFIVILGFILA 217
Query: 246 DVSNWSP----FAPNGFKEILTGATVVFFAYVGFDAVANSAEESKKPQRDLPIGILGSLL 301
NWS FAP GF ++ G F+A+VGFD +A S+EE++ P+R +P+ I SL
Sbjct: 218 QPHNWSADEGGFAPFGFSGVMAGTASCFYAFVGFDVIAASSEEAQNPRRSVPLAIAISLA 277
Query: 302 ICAALYVGVSLVLTGMVPYKFLDEDAPLSDAFASRGLKYVSVLISFXXXXXXXXXXXXXX 361
I A Y+ VS VLT MVP+ LD D+ L+DAF RG ++ +++
Sbjct: 278 IAAGAYILVSTVLTLMVPWHSLDPDSALADAFYQRGYRWAGFIVAAGSICAMNTVLLSLL 337
Query: 362 YVQSXXXXXXXXXXXXPSIFAKVHPKRHTPVHSQVWVGIVAGILAGLFNVRVLSHILSVG 421
+ +FA VHP+ PV + G++ LA L ++ L LS+G
Sbjct: 338 FSLPRIVYAMAADGLFFQVFAHVHPRTQVPVAGTLAFGLLTAFLALLLDLESLVQFLSLG 397
Query: 422 TLTGYSVVSACVIALRWK 439
TL Y+ V+ +I LR++
Sbjct: 398 TLLAYTFVATSIIVLRFQ 415
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9C5D6 | CAAT9_ARATH | No assigned EC number | 0.7158 | 0.9463 | 0.9613 | yes | no |
| P30825 | CTR1_HUMAN | No assigned EC number | 0.3257 | 0.8840 | 0.8124 | yes | no |
| P30823 | CTR1_RAT | No assigned EC number | 0.3260 | 0.8685 | 0.8044 | yes | no |
| Q09143 | CTR1_MOUSE | No assigned EC number | 0.3271 | 0.8685 | 0.8070 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 578 | |||
| TIGR00906 | 557 | TIGR00906, 2A0303, cationic amino acid transport p | 1e-108 | |
| TIGR00909 | 429 | TIGR00909, 2A0306, amino acid transporter | 6e-86 | |
| COG0531 | 466 | COG0531, PotE, Amino acid transporters [Amino acid | 2e-54 | |
| pfam13520 | 425 | pfam13520, AA_permease_2, Amino acid permease | 8e-33 | |
| PRK11357 | 445 | PRK11357, frlA, putative fructoselysine transporte | 8e-29 | |
| TIGR00911 | 501 | TIGR00911, 2A0308, L-type amino acid transporter | 3e-27 | |
| pfam00324 | 473 | pfam00324, AA_permease, Amino acid permease | 2e-25 | |
| TIGR00908 | 442 | TIGR00908, 2A0305, ethanolamine permease | 8e-23 | |
| COG1113 | 462 | COG1113, AnsP, Gamma-aminobutyrate permease and re | 8e-22 | |
| TIGR00905 | 473 | TIGR00905, 2A0302, transporter, basic amino acid/p | 4e-21 | |
| COG0833 | 541 | COG0833, LysP, Amino acid transporters [Amino acid | 2e-18 | |
| PRK10836 | 489 | PRK10836, PRK10836, lysine transporter; Provisiona | 6e-16 | |
| TIGR03428 | 475 | TIGR03428, ureacarb_perm, permease, urea carboxyla | 5e-15 | |
| PRK10238 | 456 | PRK10238, PRK10238, aromatic amino acid transporte | 1e-13 | |
| PRK10644 | 445 | PRK10644, PRK10644, arginine:agmatin antiporter; P | 2e-13 | |
| pfam13906 | 51 | pfam13906, AA_permease_C, C-terminus of AA_permeas | 6e-13 | |
| TIGR01773 | 452 | TIGR01773, GABAperm, gamma-aminobutyrate permease | 8e-13 | |
| PRK11021 | 410 | PRK11021, PRK11021, putative transporter; Provisio | 2e-12 | |
| PRK15049 | 499 | PRK15049, PRK15049, L-asparagine permease; Provisi | 1e-11 | |
| TIGR00913 | 478 | TIGR00913, 2A0310, amino acid permease (yeast) | 1e-11 | |
| PRK11387 | 471 | PRK11387, PRK11387, S-methylmethionine transporter | 2e-11 | |
| TIGR04299 | 430 | TIGR04299, antiport_PotE, putrescine-ornithine ant | 6e-11 | |
| TIGR03810 | 468 | TIGR03810, arg_ornith_anti, arginine-ornithine ant | 7e-11 | |
| PRK10655 | 438 | PRK10655, potE, putrescine transporter; Provisiona | 2e-10 | |
| TIGR00907 | 482 | TIGR00907, 2A0304, amino acid permease (GABA perme | 3e-09 | |
| PRK10249 | 458 | PRK10249, PRK10249, phenylalanine transporter; Pro | 9e-09 | |
| TIGR04298 | 429 | TIGR04298, his_histam_anti, histidine-histamine an | 5e-07 | |
| PRK10197 | 446 | PRK10197, PRK10197, gamma-aminobutyrate transporte | 2e-06 | |
| PRK10746 | 461 | PRK10746, PRK10746, putative transport protein Yif | 4e-06 | |
| PRK10580 | 457 | PRK10580, proY, putative proline-specific permease | 8e-06 | |
| PRK11049 | 469 | PRK11049, PRK11049, D-alanine/D-serine/glycine per | 1e-05 | |
| PRK10435 | 435 | PRK10435, cadB, lysine/cadaverine antiporter; Prov | 7e-05 | |
| TIGR03813 | 474 | TIGR03813, put_Glu_GABA_T, putative glutamate/gamm | 3e-04 |
| >gnl|CDD|129984 TIGR00906, 2A0303, cationic amino acid transport permease | Back alignment and domain information |
|---|
Score = 334 bits (859), Expect = e-108
Identities = 192/555 (34%), Positives = 300/555 (54%), Gaps = 43/555 (7%)
Query: 39 LRAKTLTAPSVRTNDGEGLLRRLGLFELVLIGVGASVGAGIFVVTGTVAR-DAGPGVTIS 97
+R K + S + + R L ++L+ +G+G+++GAGI+V+TG VAR D+GP + +S
Sbjct: 11 IRRKIVDLDS---REESKMKRCLTTWDLMALGIGSTIGAGIYVLTGEVARNDSGPAIVLS 67
Query: 98 FLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNELTAFLVFAQLMLDYHIGAASI 157
FL++G A+VL+ CYAE +R P G AYLY+Y EL AF+ L+L+Y IG A++
Sbjct: 68 FLISGLAAVLSGFCYAEFGARVP-KAGSAYLYSYVTVGELWAFITGWNLILEYVIGTAAV 126
Query: 158 ARSLASYVVSILELFPFFKENIPSW-IGHGGEEFLGGTLSINILAPILLALLTIVLCWGV 216
ARS ++Y +L + I + + + G + A L+ LL ++L +GV
Sbjct: 127 ARSWSAYFDELL------NKQIGQFRRTYFKLNYDGLAEYPDFFAVCLILLLAVLLSFGV 180
Query: 217 GESSVLNSCMTVVKVIIVIVVIFAGAFEVDVSNWSP--------FAPNGFKEILTGATVV 268
ES+ +N T + +++++ VI AG + DV+NWS F P GF +L+GA
Sbjct: 181 KESAWVNKIFTAINILVLLFVIIAGFTKADVANWSITEEKGAGGFMPYGFTGVLSGAATC 240
Query: 269 FFAYVGFDAVANSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLDEDAP 328
FFA++GFDA+A + EE K PQR +PIGI+ SLL+C Y +S LT M+PY LD DAP
Sbjct: 241 FFAFIGFDAIATTGEEVKNPQRAIPIGIVTSLLVCFVAYFLMSAALTLMMPYYLLDPDAP 300
Query: 329 LSDAFASRGLKYVSVLISFGAVAGLTTTLLVGLYVQSRLYLGLGRDGLLPSIFAKVHPKR 388
AF G +++ GA+ G++T+LL G++ R+ + RDGLL A+++ K
Sbjct: 301 FPVAFEYVGWGPAKYIVAVGALCGMSTSLLGGMFPLPRVIYAMARDGLLFKWLAQINSKT 360
Query: 389 HTPVHSQVWVGIVAGILAGLFNVRVLSHILSVGTLTGYSVVSACVIALRWK--------- 439
TP+++ V G +A ++A LF+++ L +LS+GTL YS+V+ACV+ LR++
Sbjct: 361 KTPINATVVSGAIAALMAFLFDLKALVDLLSIGTLLAYSLVAACVLILRYQPGLVYGQAK 420
Query: 440 ---DRTSRNDSSRLTSAW---------RQGVICLIIIACC--GFGAGLFYRINASYILLI 485
++ + + TS R LI+ +G S LL
Sbjct: 421 DTDEKDTLDSWVPFTSKSESQSEGFSLRTLFSGLILGLSILTTYGRAAIAEEAWSIALLT 480
Query: 486 VAVVIAVLASAMLCLRHGYSDPPGFSCPGVPLLPAVSIFFNLFLFAQLHYEAWWRFVILS 545
+ +V+ +L + + F P VP LPA+SI N+FL QL + W RF I
Sbjct: 481 LFLVLFLLVVLTIWRQPQNKQKVAFKVPLVPFLPALSILINIFLMVQLDADTWVRFAIWM 540
Query: 546 FISIGLYAFYGQYHA 560
I +Y YG H+
Sbjct: 541 AIGFLIYFLYGIRHS 555
|
[Transport and binding proteins, Amino acids, peptides and amines]. Length = 557 |
| >gnl|CDD|129987 TIGR00909, 2A0306, amino acid transporter | Back alignment and domain information |
|---|
Score = 273 bits (699), Expect = 6e-86
Identities = 143/389 (36%), Positives = 216/389 (55%), Gaps = 9/389 (2%)
Query: 57 LLRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGPGVTISFLLAGAASVLNALCYAELA 116
L R LGLF+L ++G+GA +G GIFVVTG A AGP V +SF+LAG ++ AL YAELA
Sbjct: 1 LSRELGLFDLTMLGIGAMIGTGIFVVTGIAAGKAGPAVILSFVLAGLTALFIALVYAELA 60
Query: 117 SRFPAVVGGAYLYAYTAFNELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFK 176
+ P V G Y YAY A ELTAF++ L L+Y + A++A Y+ L
Sbjct: 61 AMLP-VAGSPYTYAYEAMGELTAFIIGWSLWLEYGVAVAAVAVGWGGYLQEFLP------ 113
Query: 177 ENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGVGESSVLNSCMTVVKVIIVIV 236
+ + G N+ A +++ LT +L G ES +N + V+KV +++
Sbjct: 114 -GVGLDLPAVLTAKPGNGGVFNLPALLIVLFLTYILYLGAKESGKVNDILVVLKVAALLL 172
Query: 237 VIFAGAFEVDVSNWSPFAPNGFKEILTGATVVFFAYVGFDAVANSAEESKKPQRDLPIGI 296
GA +N++PF P GF + +VFFA++GF+A++ +AEE K P+RD+P I
Sbjct: 173 FAALGAIHFASNNYTPFMPMGFGGVGAATALVFFAFIGFEAISTAAEEVKNPERDIPKAI 232
Query: 297 LGSLLICAALYVGVSLVLTGMVPYK-FLDEDAPLSDAFASRGLKYVSVLISFGAVAGLTT 355
+ SL++ LYV V+ V+ G VP++ APLS G ++++ GAV + +
Sbjct: 233 ILSLIVVTLLYVLVAAVILGAVPWRQLAGSTAPLSLVGYDLGQGIGGLILTAGAVFSIAS 292
Query: 356 TLLVGLYVQSRLYLGLGRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGILAGLFNVRVLS 415
+L G+Y SR+ + RDGLLP +KVHPK TP S + + A +LA L + L+
Sbjct: 293 VMLAGIYGTSRVLFAMSRDGLLPGSLSKVHPKTGTPHMSIIIFSLTAALLASLVPLEGLA 352
Query: 416 HILSVGTLTGYSVVSACVIALRWKDRTSR 444
+ S+GTL ++ V+ VI LR + +
Sbjct: 353 ELTSIGTLIAFAAVNVAVIILRRRRPDIQ 381
|
[Transport and binding proteins, Amino acids, peptides and amines]. Length = 429 |
| >gnl|CDD|223605 COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 191 bits (486), Expect = 2e-54
Identities = 147/454 (32%), Positives = 224/454 (49%), Gaps = 35/454 (7%)
Query: 55 EGLLRRLGLF-ELVLIGVGASVGAGIFVVTGTVARDAGPGVTISFLLAGAASVLNALCYA 113
L ++LGLF L +GVG+ +G+GIF + G+ A P +++L+AG + AL YA
Sbjct: 8 SELKKKLGLFDLLTALGVGSMIGSGIFALPGSAAG-LAPAAILAWLIAGIIILFLALSYA 66
Query: 114 ELASRFPAVVGGAYLYAYTAFNELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFP 173
EL+S P GGAY YA A FL +L Y I A+IA ASY+ +
Sbjct: 67 ELSSAIP-SAGGAYAYAKRALGPRLGFLAGWLYLLAYVIALAAIAIGAASYLSYLFPGPG 125
Query: 174 FFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGVGESSVLNSCMTVVKVII 233
G L I ++A L+ALLT++ G+ S+ +NS +T++K+II
Sbjct: 126 LL---------------SIGPLLIILIALALIALLTLLNLRGIKASAKINSIITILKIII 170
Query: 234 VIVVIFAGAFEVDVSNWSPFAP-----NGFKEILTGATVVFFAYVGFDAVANSAEESKKP 288
+++ I G F SN + FAP F IL + FFA+ GF+A+A AEE K P
Sbjct: 171 LLIFIILGLFAFGFSNGNLFAPFNPGGGSFGGILAAILLAFFAFTGFEAIATLAEEVKNP 230
Query: 289 QRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLDE---DAPLSDAFASRGLKYVSVLI 345
+R +P I+ SLLI LY+ +LV+ G++P L APL+ A G + +++I
Sbjct: 231 KRTIPRAIILSLLIVLILYILGALVIVGVLPAGDLAASAPSAPLALAALFGGGNWGAIII 290
Query: 346 SFGAVAGLTTTLLVGLYVQSRLYLGLGRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGIL 405
+ A+ L +LL + SR+ + RDGLLP FAKV+PK TPV + + GI++ IL
Sbjct: 291 AILALLSLFGSLLAWILAVSRVLYAMARDGLLPKFFAKVNPKGRTPVIALILTGIISLIL 350
Query: 406 AGLFNVRVLSHIL-----SVGTLTGYSVVSACVIALRWKDRTSRNDSSRLTSAWRQGVIC 460
LF + ++ SV L Y +V+ ++ LR K + R +I
Sbjct: 351 LLLFPLSSIAFNALVSLASVAFLIAYLLVALALLVLRRKKPDLK----RPFRLPLAPLIP 406
Query: 461 LIIIACCGFGAGLFYRINASYILLIVAVVIAVLA 494
++ I Y +LL V ++ +
Sbjct: 407 ILGIVAVLLLLYALYASGLPPLLLGVILIAGGII 440
|
Length = 466 |
| >gnl|CDD|222193 pfam13520, AA_permease_2, Amino acid permease | Back alignment and domain information |
|---|
Score = 130 bits (328), Expect = 8e-33
Identities = 110/430 (25%), Positives = 197/430 (45%), Gaps = 42/430 (9%)
Query: 61 LGLFELVLIGVGASVGAGIFVVTGTVARDAGPGVTISFLLAGAASVL-NALCYAELASRF 119
L L + +G+ +G+GIFV + AG + +A L AL YAEL+S F
Sbjct: 1 LSLLSAFALVIGSIIGSGIFVTPLIAS--AGAAAILWGWIAALIFSLAVALVYAELSSAF 58
Query: 120 PAVVGGAYLYAYTAFNELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENI 179
P GG Y++ AF + AF+ L Y +G AS + A Y++S
Sbjct: 59 P-RNGGIYVWLKNAFGKPVAFIAAWFNWLAYILGLASSSSVAAQYLLSAF---------- 107
Query: 180 PSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGVGESSVLNSCMTVVKVIIVIVVIF 239
+ +G T +A +L + ++ G+ ES+ + + + +VK+++ +++I
Sbjct: 108 -------FPDLVGNTWLTYGIAIAILIIFALINIRGIKESAKIQNILGIVKLLLPLILII 160
Query: 240 A--------GAFEVDVSNWSPFAPNGFKEILTGATVVFFAYVGFDAVANSAEESKKPQRD 291
G F + ++W+ F P+G+ + G +V +++ GF++ AN +EE KK RD
Sbjct: 161 LLGLVLALGGGFNLLPNSWTTFFPSGWPGVFLGLLIVLWSFGGFESAANVSEEVKK--RD 218
Query: 292 LPIGILGSLLICAALYVGVSLVLTGMVPYKFLDEDAPLSDA----FASRGLKYVSVLISF 347
+P + LLI LY+ V+++ G+VP + + + L F + G + ++++
Sbjct: 219 VPKALFIGLLIVGVLYLLVNILFLGVVPDDEIAKLSNLPSVAALLFEAVGGPWGAIIVVI 278
Query: 348 GAVAGLTTTLLVGLYVQSRLYLGLGRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGILAG 407
L + + SR+ L RDG+LP FAKV+ K +PV + + I++ IL
Sbjct: 279 LLALSLLGAVNTAIVASSRVLEALARDGVLPKFFAKVN-KFGSPVRALILTAILSLILLL 337
Query: 408 LF--NVRVLSHILSVGTLTGYSVVSACVIALRWKDRTSRNDSSRLTSAWRQGVICLIIIA 465
LF + + +LS+ + V +I L R R D R+ W + ++ I
Sbjct: 338 LFLLSGAAYNALLSLSAVGYLLVYLLLIIGL-LILRKKRPDLPRIKGRW---PVAILAIL 393
Query: 466 CCGFGAGLFY 475
F +
Sbjct: 394 FILFLLVALF 403
|
Length = 425 |
| >gnl|CDD|183096 PRK11357, frlA, putative fructoselysine transporter; Provisional | Back alignment and domain information |
|---|
Score = 119 bits (299), Expect = 8e-29
Identities = 92/363 (25%), Positives = 162/363 (44%), Gaps = 32/363 (8%)
Query: 54 GEGLLRRLGLFELVLIGVGASVGAGIFVVTGTVARDAG-PGVTI-SFLLAGAASVLNALC 111
+ L R+LG + ++ I VG +VG+GIFV G VA+ AG P +T+ +F++ G +
Sbjct: 3 SQELQRKLGFWAVLAIAVGTTVGSGIFVSVGEVAKAAGTPWLTVLAFVIGGLIVIPQMCV 62
Query: 112 YAELASRFPAVVGGAYLYAYTAFNELTAFLVFAQLMLDYHIGAASIARSLASYVVSILEL 171
YAEL++ +P G Y+Y A + AFL + A+ A SL+ ++I+
Sbjct: 63 YAELSTAYPEN-GADYVYLKNAGSRPLAFL------SGWASFWANDAPSLSIMALAIVSN 115
Query: 172 FPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGVGESSVLNSCMTVVKV 231
F P L +A L+ ++ V + + +T+ K+
Sbjct: 116 LGFLTPIDP--------------LLGKFIAAGLIIAFMLLHLRSVEGGAAFQTLITIAKI 161
Query: 232 IIVIVVIFAGAFEVDVSNWSPFAPN------GFKEILTGATVVFFAYVGFDAVANSAEES 285
I +VI G F N++ F +L G + ++Y G ++ E
Sbjct: 162 IPFTIVIGLGIFWFKAENFAAPTTTAIGATGSFMALLAGISATSWSYTGMASICYMTGEI 221
Query: 286 KKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPY-KFLDEDAPLSDAFASRGL--KYVS 342
K P + +P ++GS L+ LY ++LV++G++P+ K + + P+SDA
Sbjct: 222 KNPGKTMPRALIGSCLLVLVLYTLLALVISGLMPFDKLANSETPISDALTWIPALGSTAG 281
Query: 343 VLISFGAVAGLTTTLLVGLYVQSRLYLGLGRDGLLPSIFAKVHPKRHTPVHSQVWVGIVA 402
+ ++ A+ + +L + Q RL + +D L F VHPK +TP S + G +
Sbjct: 282 IFVAITAMIVILGSLSSCVMYQPRLEYAMAKDNLFFKCFGHVHPKYNTPDVSIILQGALG 341
Query: 403 GIL 405
Sbjct: 342 IFF 344
|
Length = 445 |
| >gnl|CDD|233179 TIGR00911, 2A0308, L-type amino acid transporter | Back alignment and domain information |
|---|
Score = 114 bits (288), Expect = 3e-27
Identities = 112/419 (26%), Positives = 193/419 (46%), Gaps = 38/419 (9%)
Query: 40 RAKTLTAPSVRTNDGEG---LLRRLGLFELVLIGVGASVGAGIFVVTGTVARDAG-PGVT 95
+ + S T DG L + + L V I VG +G+GIFV V ++AG G+
Sbjct: 20 SSGRKKSVSASTVDGGEAVALKKEITLLSGVGIIVGTIIGSGIFVSPKGVLKNAGSVGLA 79
Query: 96 -ISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNELTAFL-VFAQLMLDYHIG 153
I + + G S++ AL YAEL + P GG Y Y F L AFL ++ +L++
Sbjct: 80 LIMWAVCGIFSIVGALVYAELGTTIPKS-GGEYNYILEVFGPLLAFLRLWIELLVIRPGS 138
Query: 154 AASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLC 213
A A + A Y+ L P F + +I ++A + + LLT+V C
Sbjct: 139 QAVNALNFAIYI-----LTPVFPDCEVP------------EWAIRLVAVLCVLLLTLVNC 181
Query: 214 WGVGESSVLNSCMTVVKVIIVIVVIFAGAFEVDVSNWSPFAP-NGFK-------EILTGA 265
V ++ + T K++ ++++I G ++ P N F+ I+
Sbjct: 182 LSVKWATRVQDIFTACKLLALLLIIITGWVQLGKGGVESLNPKNAFEGTETSAGGIVLAF 241
Query: 266 TVVFFAYVGFDAVANSAEESKKPQRDLPIGILGSLLICAALYVGVSLV-LTGMVPYKFLD 324
+AY G++ + EE K P R LPI I+ S+ I +YV ++ T + P + L
Sbjct: 242 YSGIWAYGGWNYLNFVTEEVKNPYRTLPIAIIISMPIVTFIYVLTNIAYFTVLSPEELLA 301
Query: 325 EDAPLSDAFASRGLKYVSVLISFGAVAGLTT--TLLVGLYVQSRLYLGLGRDGLLPSIFA 382
A ++ F R L +S + A+ GL+ ++ L+ SRL+ GR+G LPS+ +
Sbjct: 302 SLA-VAVDFGERLLGVMSWAMP--ALVGLSCFGSVNGSLFSSSRLFFVGGREGHLPSLLS 358
Query: 383 KVHPKRHTPVHSQVWVGIVAGILAGLFNVRVLSHILSVGTLTGYSVVSACVIALRWKDR 441
+H KR TP+ S + V + ++ ++ L +++S ++ A ++ LR+K
Sbjct: 359 MIHVKRLTPLPSLLIVCTLTLLMLFSGDIYSLINLISFANWLFNALAVAGLLWLRYKRP 417
|
[Transport and binding proteins, Amino acids, peptides and amines]. Length = 501 |
| >gnl|CDD|215858 pfam00324, AA_permease, Amino acid permease | Back alignment and domain information |
|---|
Score = 109 bits (274), Expect = 2e-25
Identities = 93/406 (22%), Positives = 157/406 (38%), Gaps = 54/406 (13%)
Query: 66 LVLIGVGASVGAGIFVVTGTVARDAGPGVT-ISFLLAGAASVLNALCYAELASRFPAVVG 124
+++I +G +G G+FV +G+V AGP + +L+AG L L E+++ P V G
Sbjct: 2 VLMIALGGVIGTGLFVGSGSVLGQAGPAGALLGYLIAGVVIFLTMLSLGEMSTNGP-VAG 60
Query: 125 GAYLYAYTAFNELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIG 184
G Y YA F L + A + + AS ++ EL P
Sbjct: 61 GFYAYASRFLGPSLGFATGWNYWLSWIFVIA-LELTAASILIQFWELVP----------- 108
Query: 185 HGGEEFLGGTLSINILAPILLALLTIVLCWGVGESSVLNSCMTVVKVIIVIVVIF----- 239
+ + + + LL I+ GV ++KVI +I I
Sbjct: 109 --------DIPYLWVWGAVFIVLLLIINLVGVKGYGEAEFWFALIKVIAIIGFIIVGFII 160
Query: 240 ---------------AGAFEVDVSNWSPFAPNGFKEILTGATVVFFAYVGFDAVANSAEE 284
G ++ F + + FFA+ G + V N+A E
Sbjct: 161 PLSGGGPNDGAYLGYNGGKNNFPPGFASPGTGSFANFFSVFVIAFFAFTGIELVGNAAGE 220
Query: 285 SKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLDEDA-------PLSDAFASRG 337
K P++ +P IL ++ Y+ L + +VP+ A P F S G
Sbjct: 221 VKNPRKAIPKAILQAVWRITIFYILSLLAIGLLVPWNDPGLLADSASAASPFVIFFKSLG 280
Query: 338 LKYVSVLISFGAVAGLTTTLLVGLYVQSRLYLGLGRDGLLPSIFAKVHPKRHTPVHSQVW 397
+ ++ LI+ + + LY SR+ L RDGL P KV K P+ + +
Sbjct: 281 ISGLAPLINAVILTAALSAANSSLYSGSRVLYALARDGLAPKFLKKV-DKSGVPLRAILL 339
Query: 398 ---VGIVAGILAGLFNVRVLSHILSVGTLTGYSV-VSACVIALRWK 439
+ ++A +LA L V + +L++ L G V + LR++
Sbjct: 340 STAISLLAVLLASLNPAIVFNFLLAISGLIGLIVWGLISLSHLRFR 385
|
Length = 473 |
| >gnl|CDD|129986 TIGR00908, 2A0305, ethanolamine permease | Back alignment and domain information |
|---|
Score = 101 bits (252), Expect = 8e-23
Identities = 106/445 (23%), Positives = 180/445 (40%), Gaps = 40/445 (8%)
Query: 57 LLRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGPGVTISFLLAGAASVLNALCYAELA 116
L + L ++L IGVG + +A+ G ++ LL + AEL+
Sbjct: 5 LKKTLATWQLWGIGVGYVISGDYAGWNFGLAQGGWGGFVVATLLVATMYLTFCFSLAELS 64
Query: 117 SRFPAVVGGAYLYAYTAFNELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFK 176
+ P GG Y +A AF FL +++++ +IA + +Y
Sbjct: 65 TMIPTA-GGGYGFARRAFGPWGGFLAGTAILIEFAFAPPAIACFIGAYC----------- 112
Query: 177 ENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGVGESSVLNSCMTVVKVIIVIV 236
E L + A + + + GVGE++ L +T V +I + V
Sbjct: 113 ------------ESLFPVGPGWLAALVFYIVFIGINILGVGEAAKLEFVVTAVAIIALGV 160
Query: 237 VIFAGAFEVDVSNWSPFAPNGFKEILTGATVVFFA--------YVGFDAVANSAEESKKP 288
I A D +N G L GA V FA ++ + VA +AEE+K P
Sbjct: 161 FIGAMVPHFDSANLFNGPQTGASSFLPGAYVGVFAAIPFAIWFFLAVEGVAMAAEETKNP 220
Query: 289 QRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFL-DEDAPLSDAFAS--RGLKYVSVLI 345
+RD+P G++G++L AL G+ +V G K L + PL +A S G ++S +
Sbjct: 221 KRDIPRGLIGAILTLLALAAGILVVGPGAADAKELMGSNNPLPEALESIYGGSTWMSQFV 280
Query: 346 SFGAVAGLTTTLLVGLYVQSRLYLGLGRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGIL 405
+ + GL + +Y SR L R G LP +KV+ K+ PV + V G++ L
Sbjct: 281 NLVGLFGLIASFHGIIYGYSRQIFALSRAGYLPESLSKVNRKK-APVLAIVVPGVIGFGL 339
Query: 406 AGLFNVRVLSHILSVGTLTGYSVVSACVIALRWK----DRTSRNDSSRLTSAWRQGVICL 461
+ ++ + G + Y + A LR + +R R LT + C+
Sbjct: 340 SLTGQTALIILVSVFGAIISYVLSMAAHFTLRIRRPDMERPYRTPGGILTPGVALVLACV 399
Query: 462 IIIACCGFGAGLFYRINASYILLIV 486
++ + A +++LI
Sbjct: 400 ALVTGFYVDPRVVVGAVAIFVVLIG 424
|
The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily [Transport and binding proteins, Amino acids, peptides and amines]. Length = 442 |
| >gnl|CDD|224038 COG1113, AnsP, Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 98.1 bits (245), Expect = 8e-22
Identities = 107/479 (22%), Positives = 178/479 (37%), Gaps = 63/479 (13%)
Query: 52 NDGEGLLRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGPGVTISFLLAGAASVLNALC 111
N+ +GL R L + LI +G ++G G+F+ +G+ AGP V +++L+AG L
Sbjct: 6 NEEQGLKRGLKNRHIQLIAIGGAIGTGLFLGSGSAIAMAGPSVLLAYLIAGIFVFLIMRA 65
Query: 112 YAELASRFPAVVGGAYLYAYTAFNELTAFLVFAQLMLDYHIGAASIARSLASYVVSILEL 171
E+ P V G YA FL + + + ++ Y+
Sbjct: 66 LGEMLVANP-VSGSFSDYARKYLGPWAGFLTGWTYWFFWVLVGIAELTAIGIYLQF---W 121
Query: 172 FPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGV---GESSVLNSCMTV 228
FP +P W+ A + LL V V GE L +
Sbjct: 122 FPD----VPQWVF----------------ALAAVVLLLAVNLISVKVFGE---LEFWFAL 158
Query: 229 VKVIIVIVVIFAGAF-----------EVDVSNWSP---FAPNGFKEILTGATVVFFAYVG 274
+KV +I I G SN F PNGF L+ +V FA+ G
Sbjct: 159 IKVAAIIAFIVVGIVLLFGGFGGGGGAAGFSNLWDHGGFFPNGFLGFLSALQIVMFAFGG 218
Query: 275 FDAVANSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLDEDA-PLSDAF 333
+ V +A E+K P++ +P I + YVG V+ + P+ + ED P F
Sbjct: 219 IELVGITAAEAKDPEKAIPKAINSVIWRILIFYVGSLFVILSLYPWNQIGEDGSPFVTVF 278
Query: 334 ASRGLKYVSVLISFGAVAGLTTTLLVGLYVQSRLYLGLGRDGLLPSIFAKVHPKRHTPVH 393
+ G+ + + +++F + + L GLY SR+ L + G P FAK+ KR P
Sbjct: 279 SLIGIPFAAGIMNFVVLTAALSALNSGLYSTSRMLYSLAKQGDAPKAFAKLS-KRGVP-- 335
Query: 394 SQVWVGIVAGILAGLFNV--------RVLSHILSVGTLTG---YSVVSACVIALRWKDRT 442
I+ + L V +V + S L + ++ + LR K +
Sbjct: 336 ---VNAILLSAVVLLLGVVLNYILPEKVFELVTSSSGLGLLFVWLMILLSQLKLR-KAKP 391
Query: 443 SRNDSSRLTSAWRQGVICLIIIACCGFGAGLFYRINASYILLIVAVVIAVLASAMLCLR 501
+ + L + + + + LL+ V + +L L R
Sbjct: 392 AEGKKLKFKMPLYPFTNYLTLAFLAFVLVLMLFDPDTRISLLVGPVWLVLLGIGYLVKR 450
|
Length = 462 |
| >gnl|CDD|129983 TIGR00905, 2A0302, transporter, basic amino acid/polyamine antiporter (APA) family | Back alignment and domain information |
|---|
Score = 96.3 bits (240), Expect = 4e-21
Identities = 89/363 (24%), Positives = 163/363 (44%), Gaps = 32/363 (8%)
Query: 59 RRLGLFELVLIGVGASVGAGIFVVTGTVARDAGPG-VTISFLLAGAASVLNALCYAELAS 117
++LGLF L + +G+ +G+GIF + +A AGPG V I +++ G + A +A LA+
Sbjct: 7 KKLGLFALTALVIGSMIGSGIFSLPQNLASVAGPGAVIIGWIITGVGMLALAFVFAILAT 66
Query: 118 RFPAVVGGAYLYAYTAFNELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKE 177
+ P + GG Y YA F F+ L IG + A L S + FP F
Sbjct: 67 KKPELDGGIYAYAREGFGPYIGFMSGWGYWLSAWIGNVAYAVLLFSALG---YFFPLFG- 122
Query: 178 NIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGVGESSVLNSCMTVVKVIIVIVV 237
G + + A +LL + T ++ GV +++ +N+ T+ K+I + +
Sbjct: 123 -------------SGNPVPSILGASVLLWVFTFLVLRGVRQAAFINTITTIAKLIPLFLF 169
Query: 238 IFAGAF----EVDVSNW----SPFAPNGFKEILTGATVVFFAYVGFD-AVANSAEESKKP 288
I G F ++ +++ P + F ++ V + ++G + AV +S K
Sbjct: 170 IIIGWFWFKLDLFTADFWGHDVPSLGSVFSQVKNTMLVTLWVFIGIEGAVVSSGRAKNK- 228
Query: 289 QRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLDE-DAPLSDAFASRGL-KYVSVLIS 346
D+ + L +Y+ ++L+ G++P + L P A + K+ +VLIS
Sbjct: 229 -SDVGKATVLGTLGALVIYILITLLSLGVLPQQELANLPNPSMAAVLEMIVGKWGAVLIS 287
Query: 347 FGAVAGLTTTLLVGLYVQSRLYLGLGRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGILA 406
G + + +LL + + + +DGL P IF +V+ K P + + I+ +
Sbjct: 288 LGLIISVLGSLLSWTMLAAEVPFSAAKDGLFPKIFGRVN-KNGAPSVALLLTNILIQLFL 346
Query: 407 GLF 409
L
Sbjct: 347 LLT 349
|
This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions [Transport and binding proteins, Amino acids, peptides and amines]. Length = 473 |
| >gnl|CDD|223903 COG0833, LysP, Amino acid transporters [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 88.5 bits (220), Expect = 2e-18
Identities = 87/363 (23%), Positives = 147/363 (40%), Gaps = 59/363 (16%)
Query: 51 TNDGEGLLRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGP-GVTISFLLAGAASVLNA 109
T G L R L L +I +G ++G G+FV +G AGP G+ I++L+ G
Sbjct: 36 TQQGGELKRSLKSRHLQMIAIGGAIGTGLFVGSGKALSQAGPAGLLIAYLIIGIMVYFVM 95
Query: 110 LCYAELASRFPAVVGGAYLYAYTAFNELTAFLVFAQLMLDYHIGAASIARSLASYVVSIL 169
ELA +P V G YA + F + L++ + +L + +
Sbjct: 96 QSLGELAVFYP-VSGSFSTYATRFVDPAFGFALGWNYWLNWAV-------TLPLELTAAS 147
Query: 170 ELFPF-FKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGV---GESS-VLNS 224
+ + F + +P WI ++ I L L+ ++ +GV GE+ +S
Sbjct: 148 LVIQYWFPDTVPPWI------WIA----------IFLVLIFLLNLFGVKGFGETEFWFSS 191
Query: 225 C--MTVVKVIIVIVVIFAGAFEVDVSNWS-------PFAPNGFKEILTGATVVFFAYVGF 275
+T++ II+ ++I G F GFK + + F++ G
Sbjct: 192 IKVLTIIGFIILGIIIICGGGPTHGYIGFNYWHDPGAF-AGGFKGFCSVFVIAAFSFSGT 250
Query: 276 DAVANSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLDED--------- 326
+ V +A ES+ P++ +P I Y+ V+ +VPY D
Sbjct: 251 ELVGLAAGESENPRKSIPKAIKQVFWRILLFYILSIFVIGLLVPYN--DPRLLGNSSSGV 308
Query: 327 --APLSDAFASRGLKYVSVLISFGAVAGLTTTLLVG---LYVQSRLYLGLGRDGLLPSIF 381
+P A + G+ + +++ AV LT+ L LY SR+ L + G P IF
Sbjct: 309 AASPFVIAIKNAGIPVAASIMN--AVI-LTSVLSAANSGLYASSRMLYSLAKQGKAPKIF 365
Query: 382 AKV 384
AKV
Sbjct: 366 AKV 368
|
Length = 541 |
| >gnl|CDD|182767 PRK10836, PRK10836, lysine transporter; Provisional | Back alignment and domain information |
|---|
Score = 80.2 bits (198), Expect = 6e-16
Identities = 106/401 (26%), Positives = 175/401 (43%), Gaps = 47/401 (11%)
Query: 50 RTNDGEGLLRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGP-GVTISFLLAGAASVLN 108
+T + GL R L L +I +G S+G G+FV +G AGP G +S++L G
Sbjct: 6 KTTEAPGLRRELKARHLTMIAIGGSIGTGLFVASGATISQAGPGGALLSYMLIGLMVYFL 65
Query: 109 ALCYAELASRFPAVVGGAYLYAYTAFNELTAFLVFAQLMLDYHIGAASIARSLASYVVSI 168
ELA+ P V G Y E F + ++ A +IA L + + +
Sbjct: 66 MTSLGELAAYMP-VSGSFATYGQNYVEEGFGFALGWNYWYNW---AVTIAVDLVAAQLVM 121
Query: 169 LELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGVGESSVLNSCMTV 228
FP + P WI FLG ++ LL + G GE+ S + V
Sbjct: 122 SWWFP----DTPGWIWSA--LFLG-----------VIFLLNYISVRGFGEAEYWFSLIKV 164
Query: 229 VKVIIVIVV-------IFAGAFEVDVSNW----SPFAPNGFKEILTGATVVFFAYVGFDA 277
VI+ I+V IF GA SNW +PFA GF ++ A +V F++ G +
Sbjct: 165 TTVIVFIIVGVLMIIGIFKGAEPAGWSNWTIGDAPFA-GGFAAMIGVAMIVGFSFQGTEL 223
Query: 278 VANSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPY---KFLDED------AP 328
+ +A ES+ P +++P + YV L+++ ++PY L D +P
Sbjct: 224 IGIAAGESEDPAKNIPRAVRQVFWRILLFYVFAILIISLIIPYTDPSLLRNDVKDISVSP 283
Query: 329 LSDAFASRGLKYVSVLISFGAVAGLTTTLLVGLYVQSRLYLGLGRDGLLPSIFAKVHPKR 388
+ F GL + +++ + + + G+Y +R+ L DG P IFAK+ +
Sbjct: 284 FTLVFQHAGLLSAAAVMNAVILTAVLSAGNSGMYASTRMLYTLACDGKAPRIFAKL-SRG 342
Query: 389 HTPVHSQVWVGIVAGI--LAGLF-NVRVLSHILSVGTLTGY 426
P ++ ++AG+ L +F N V +L+ +TG+
Sbjct: 343 GVPRNALYATTVIAGLCFLTSMFGNQTVYLWLLNTSGMTGF 383
|
Length = 489 |
| >gnl|CDD|132469 TIGR03428, ureacarb_perm, permease, urea carboxylase system | Back alignment and domain information |
|---|
Score = 77.2 bits (190), Expect = 5e-15
Identities = 104/393 (26%), Positives = 177/393 (45%), Gaps = 40/393 (10%)
Query: 57 LLRRLGLFELVLIGVG-ASVGAGIFVVTGTVARDAGPGVTISFLLAGAASVLNALCYAEL 115
L R+LG + G S+ IF + G GP ++ + +L AL +AEL
Sbjct: 11 LHRKLGRYASFAAGFSFVSILTTIFQLFGFGYGFGGPAFFWTWPVVFVGQLLVALNFAEL 70
Query: 116 ASRFPAVVGGAYLYAYTAFNELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFF 175
A+R+P + G Y ++ E+ + +++ + AA+ A +L + +I F
Sbjct: 71 AARYP-ISGAIYQWSRRMGGEVIGWFAGWFMIIAQIVTAAAAAIALQVVLPNIWSGFQII 129
Query: 176 KENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGVGESSVLNS---CMTVVKVI 232
E+ P+ G + +L +LL L T++ C GV S +N+ +V V+
Sbjct: 130 GED-PTLTSPSG------AANAVLLGSVLLVLTTVINCIGVEWMSRVNTIGVTCEIVGVL 182
Query: 233 IVIVVIFA----GAFEVDVSNWSPFAPNGFKEILTGATVVFFAYVGFDAVANSAEESKKP 288
VI V+F G V ++ + +P + L + + VGF + +EE+K P
Sbjct: 183 AVIGVLFTHAQRGPGVVFDTSVTGASPGYYGAFLVSGLMAAYVMVGFGSAGELSEETKNP 242
Query: 289 QRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLDEDAPLSDA-FASRGLKYV------ 341
+R P IL +L + A +G L++ G L L+D A+ GL YV
Sbjct: 243 RRVAPRTILTALSVSA---LGGGLMILGA-----LMAAPSLTDGRLAAEGLPYVLSAVLD 294
Query: 342 ----SVLISFGAVAGLTTTLLVGLYVQSRLYLGLGRDGLLPS--IFAKVHPKRHTPVHSQ 395
+VL+ A+A L TL + SRL + RDG LP+ ++VHP+ TP+
Sbjct: 295 SPWGTVLLVDVAIAILVCTLAIQT-AGSRLMFSMARDGKLPASAQLSRVHPRTGTPILPS 353
Query: 396 VWVGIVA-GILA-GLFNVRVLSHILSVGTLTGY 426
+ +G++ GIL + N + + + SV + Y
Sbjct: 354 IVIGVLCIGILLINVGNSALFATLASVCIVLIY 386
|
A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon. Length = 475 |
| >gnl|CDD|182324 PRK10238, PRK10238, aromatic amino acid transporter; Provisional | Back alignment and domain information |
|---|
Score = 72.7 bits (178), Expect = 1e-13
Identities = 78/364 (21%), Positives = 149/364 (40%), Gaps = 38/364 (10%)
Query: 54 GEGLLRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGPGVTISFLLAGAASVLNALCYA 113
GE L R L + LI +G ++G G+F+ + +V + AGPG+ + + +AG + L
Sbjct: 7 GEQLKRGLKNRHIQLIALGGAIGTGLFLGSASVIQSAGPGIILGYAIAGFIAFLIMRQLG 66
Query: 114 ELASRFPAVVGGAYLYAYTAFNELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFP 173
E+ P V G +AY + F + Y + A + ++ Y+
Sbjct: 67 EMVVEEP-VAGSFSHFAYKYWGSFAGFASGWNYWVLYVLVAMAELTAVGKYI-------Q 118
Query: 174 FFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGVGESSVLNSCMTVVKVII 233
F+ IP+W+ A + ++ + V + ++KVI
Sbjct: 119 FWYPEIPTWVS----------------AAVFFVVINAINLTNVKVFGEMEFWFAIIKVIA 162
Query: 234 VIVVIFAGAFEVDVSNWSP------------FAPNGFKEILTGATVVFFAYVGFDAVANS 281
V+ +I G + + N P F P+GF ++ ++ F++ G + V +
Sbjct: 163 VVAMIIFGGWLLFSGNGGPQATVSNLWDQGGFLPHGFTGLVMMMAIIMFSFGGLELVGIT 222
Query: 282 AEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLDED-APLSDAFASRGLKY 340
A E+ P++ +P + Y+G VL ++P+ + D +P F G +
Sbjct: 223 AAEADNPEQSIPKATNQVIYRILIFYIGSLAVLLSLMPWTRVTADTSPFVLIFHELGDTF 282
Query: 341 VSVLISFGAVAGLTTTLLVGLYVQSRLYLGLGRDGLLPSIFAKVHPKRHTPVHSQVWVGI 400
V+ ++ + + +Y SR+ GL + G P A V KR PV++ + +
Sbjct: 283 VANALNIVVLTAALSVYNSCVYCNSRMLFGLAQQGNAPKALASVD-KRGVPVNTILVSAL 341
Query: 401 VAGI 404
V +
Sbjct: 342 VTAL 345
|
Length = 456 |
| >gnl|CDD|182613 PRK10644, PRK10644, arginine:agmatin antiporter; Provisional | Back alignment and domain information |
|---|
Score = 72.1 bits (177), Expect = 2e-13
Identities = 87/364 (23%), Positives = 156/364 (42%), Gaps = 53/364 (14%)
Query: 59 RRLGLFELVLIGVGASVGAGIFVVTGTVARDAGPGVTISFLLAGAASVLNALCYAELASR 118
++GL + L+ G +G+G+F++ +A G + +L+ ++ ++ YA+++S
Sbjct: 8 HKVGLIPVTLMVAGNIMGSGVFLLPANLASTGGIAI-YGWLVTIIGALGLSMVYAKMSSL 66
Query: 119 FPAVVGGAYLYAYTAFNELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKEN 178
P+ GG+Y YA F + L IG ++ Y+ FP K+
Sbjct: 67 DPSP-GGSYAYARRCFGPFLGYQTNVLYWLACWIGNIAMVVIGVGYLSY---FFPILKD- 121
Query: 179 IPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCW--------GVGESSVLNSCMTVVK 230
P++L + +V+ W G + + + TV+
Sbjct: 122 -----------------------PLVLTITCVVVLWIFVLLNIVGPKMITRVQAVATVLA 158
Query: 231 VIIVIVVIFAGAF----EVDVSNWSPFAPNGFKEILTGATVVFFAYVGFDAVANSAEESK 286
+I ++ + G F E ++ W+ F I + V ++++G ++ + +A K
Sbjct: 159 LIPIVGIAVFGWFWFRGETYMAAWNVSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVVK 218
Query: 287 KPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLD-EDAPLSDAFASRGLKYVSVLI 345
P+R++PI +G +LI A YV S + GM+P L +P DA ++
Sbjct: 219 NPKRNVPIATIGGVLIAAVCYVLSSTAIMGMIPNAALRVSASPFGDAARMALGDTAGAIV 278
Query: 346 SFGAVAGLTT-----TLLVGLYVQSRLYLGLGRDGLLPSIFAKVHPKRHTPVHSQVWVGI 400
SF A AG TLL G ++ DGL P IFA+V+ K TPV + VG+
Sbjct: 279 SFCAAAGCLGSLGGWTLLAGQTAKAA-----ADDGLFPPIFARVN-KAGTPVAGLLIVGV 332
Query: 401 VAGI 404
+ I
Sbjct: 333 LMTI 336
|
Length = 445 |
| >gnl|CDD|206077 pfam13906, AA_permease_C, C-terminus of AA_permease | Back alignment and domain information |
|---|
Score = 63.0 bits (154), Expect = 6e-13
Identities = 21/51 (41%), Positives = 28/51 (54%)
Query: 510 FSCPGVPLLPAVSIFFNLFLFAQLHYEAWWRFVILSFISIGLYAFYGQYHA 560
F P VP LPA+SI N++L QL W RF + I + +Y YG H+
Sbjct: 1 FKVPLVPFLPALSILINIYLMVQLDALTWIRFAVWLLIGLLIYFGYGIRHS 51
|
This is the C-terminus of AA-permease enzymes that is not captured by the models pfam00324 and pfam13520. Length = 51 |
| >gnl|CDD|233567 TIGR01773, GABAperm, gamma-aminobutyrate permease | Back alignment and domain information |
|---|
Score = 70.3 bits (172), Expect = 8e-13
Identities = 83/367 (22%), Positives = 144/367 (39%), Gaps = 53/367 (14%)
Query: 66 LVLIGVGASVGAGIFVVTGTVARDAGPGVTISFLLAGAASVLNALCYAELASRFPAVVGG 125
+ ++ + +GAG+FV +G+ AGP +++LLAG V E+A P G
Sbjct: 19 VTMLSIAGVIGAGLFVGSGSAIASAGPAALLAYLLAGLLVVFIMRMLGEMAVANPD-TGS 77
Query: 126 AYLYAYTAFNELTAFLV------FAQLMLDYH-IGAASIARSLASYVVSILELFPFFKEN 178
YA A F + F L++ I AA I + FP +
Sbjct: 78 FSTYADDAIGRWAGFTIGWLYWWFWVLVIPLEAIAAAGILQY----------WFP----D 123
Query: 179 IPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGVGESSVLNSCMTVVKVIIVIVV- 237
IP W+ +++ I+L L + GE + + V+ +I I++
Sbjct: 124 IPLWL-------------FSLILTIVLTLTNLYSVKSYGEFEFWFALIKVIAIIAFIILG 170
Query: 238 ---IFAGAFEVDVSNWSP------FAPNGFKEILTGATVVFFAYVGFDAVANSAEESKKP 288
IF A +VS +S F PNG +L V F+++G + V +A ES P
Sbjct: 171 AVAIFGFAPGSEVSGFSNLTGKGGFFPNGIGAVLLAILVTMFSFMGTEIVTIAAAESSNP 230
Query: 289 QRDLPIGILGSLLICAALYVGVSLVLTGMVPYK--FLDEDAPLSDAFASRGLKYVSVLIS 346
+ + + Y+G ++ ++P+ L E G+ + +++
Sbjct: 231 IKSITRATNSVIWRIIVFYLGSIFIVVALLPWNSPNLLEVGSYVAVLELLGIPHAKLIMD 290
Query: 347 FGAVAGLTTTLLVGLYVQSRLYLGLGRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGILA 406
F + + + L LY SR+ L G P +F K++ K+ PV ++A
Sbjct: 291 FVVLTAVLSCLNSALYTTSRMLYSLAERGDAPRVFMKLN-KKGVPV-----QAVLASTFF 344
Query: 407 GLFNVRV 413
V V
Sbjct: 345 SFLTVVV 351
|
GABA permease (gabP) catalyzes the translocation of 4-aminobutyrate (GABA) across the plasma membrane, with homologues expressed in Gram-negative and Gram-positive organisms. This permease is a highly hydrophobic transmembrane protein consisting of 12 transmembrane domains with hydrophilic N- and C-terminal ends. Induced by nitrogen-limited culture conditions in both Escherichia coli and Bacillus subtilis, gabP is an energy dependent transport system stimulated by membrane potential and has been observed adjacent and distant from other GABA degradation proteins. GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 452 |
| >gnl|CDD|236823 PRK11021, PRK11021, putative transporter; Provisional | Back alignment and domain information |
|---|
Score = 68.8 bits (169), Expect = 2e-12
Identities = 73/338 (21%), Positives = 128/338 (37%), Gaps = 46/338 (13%)
Query: 76 GAGIFVVTGTVARDAGPGVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFN 135
G G+F V A AG ++ L A+ +A L FP G A+ + AF
Sbjct: 16 GTGVFAVPALAALVAGNNSLWAWPLLILLIFPIAIVFARLGRHFPHAGGPAH-FVGMAFG 74
Query: 136 ELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTL 195
+ R +S++ + +P+ + F
Sbjct: 75 -------------------PRLGRVTGWLFLSVIPV------GLPAAL-QIAAGFGQALF 108
Query: 196 SINILAPILLALLTIVLCW-----GVGESSVLNSCMTVVKVIIVIVVIFAGAFEVDVSNW 250
+ +L LLT+ L W G S+ L + + ++ V +V+ + +AG + +
Sbjct: 109 GWSSWQLLLAELLTLALLWLLNLRGASSSANLQTVIALLIVALVVAIWWAGDIKPADIPF 168
Query: 251 SPFAPNGFKEILTGATVVFFAYVGFDAVANSAEESKKPQRDLPIGILGSLLICAALYVGV 310
+ + V+F+ +VG +A A+ A E K P+RD P ++ LL+ +Y
Sbjct: 169 PAPGSIEWSGLFAALGVMFWCFVGIEAFAHLASEFKNPERDFPRALMIGLLLAGLVYWAC 228
Query: 311 SLVLTGMVPYKFLDEDAP----LSDA-FASRGLKYVSVLISFGAVAGLTTTLLVGLYVQS 365
++V+ Y A + F L + V+ G +A + V +Y QS
Sbjct: 229 TVVVLHFPAYGDKQAAAASLPGIFVQLFGGYALWVICVI---GYLACFAS---VNIYTQS 282
Query: 366 --RLYLGLGRDGLLPSIFAKVHPKRHTPVHSQVWVGIV 401
RL R+G PS A++ R PV++ V
Sbjct: 283 FARLVWSQAREGRPPSYLARLSA-RGVPVNALNAVLGC 319
|
Length = 410 |
| >gnl|CDD|185009 PRK15049, PRK15049, L-asparagine permease; Provisional | Back alignment and domain information |
|---|
Score = 67.0 bits (163), Expect = 1e-11
Identities = 88/402 (21%), Positives = 168/402 (41%), Gaps = 40/402 (9%)
Query: 55 EGLLRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGPGVTISFLLAGAASVLNALCYAE 114
EG + +G ++ +I +G ++G G+F+ G + AGP + + +L+ G S E
Sbjct: 24 EGYHKAMGNRQVQMIAIGGAIGTGLFLGAGARLQMAGPALALVYLICGLFSFFILRALGE 83
Query: 115 LASRFPAVVGGAYLYAYTAFNELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPF 174
L P+ G YA E A++ +++ + ++A Y + +
Sbjct: 84 LVLHRPS-SGSFVSYAREFLGEKAAYVAGWMYFINWAMTGIVDITAVALY----MHYWGA 138
Query: 175 FKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGVGESSVLNSCMTVVKVIIV 234
F +P W+ + GT+++ I + W E + + V+ ++
Sbjct: 139 FG-GVPQWVFALAALTIVGTMNM------------IGVKW-FAEMEFWFALIKVLAIVTF 184
Query: 235 IVV--IFAGA----------FEVDVSNWSPFAPNGFKEILTGATVVFFAYVGFDAVANSA 282
+VV +F G+ F + N F P+G L V FA+ + V +A
Sbjct: 185 LVVGTVFLGSGQPLDGNTTGFHLITDN-GGFFPHGLLPALVLIQGVVFAFASIEMVGTAA 243
Query: 283 EESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYK-FLDEDAPLSDAFASRGLKYV 341
E K PQ +P I + YVG ++L ++P+ + +P F+ G+ Y+
Sbjct: 244 GECKDPQTMVPKAINSVIWRIGLFYVGSVVLLVMLLPWSAYQAGQSPFVTFFSKLGVPYI 303
Query: 342 SVLISFGAVAGLTTTLLVGLYVQSRLYLGLGRDGLLPSIFAKVHPKRHTP---VHSQVWV 398
+++ + ++L GLY R+ + G PS AK+ ++H P + + + V
Sbjct: 304 GSIMNIVVLTAALSSLNSGLYCTGRILRSMAMGGSAPSFMAKM-SRQHVPYAGILATLVV 362
Query: 399 GIVAGILAGLFNVRVLSHIL---SVGTLTGYSVVSACVIALR 437
+V L L RV +L S+G + ++ + C + LR
Sbjct: 363 YVVGVFLNYLVPSRVFEIVLNFASLGIIASWAFIIVCQMRLR 404
|
Length = 499 |
| >gnl|CDD|233181 TIGR00913, 2A0310, amino acid permease (yeast) | Back alignment and domain information |
|---|
Score = 66.5 bits (163), Expect = 1e-11
Identities = 78/351 (22%), Positives = 134/351 (38%), Gaps = 59/351 (16%)
Query: 66 LVLIGVGASVGAGIFVVTGTVARDAGP-GVTISFLLAGAASVLNALCYAELASRFPAVVG 124
+ +I +G ++G G+ V +GT GP G+ I + + G+ E+A+ +P V G
Sbjct: 9 IQMIALGGTIGTGLLVGSGTALATGGPAGLLIGYAIMGSIIYCVMQSLGEMATFYPVVSG 68
Query: 125 GAYLYAYTAFNELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIG 184
F +A +D G A +Y + L + P I
Sbjct: 69 S--------------FATYASRFVDPAFGFAVGW----NYWLQWLIVLPLELVTASMTI- 109
Query: 185 HGGEEFLGGTLSINILAPILLALLTIVLCWGV---GESS-VLNSC--MTVVKVIIVIVVI 238
++ ++ + I + I+ +GV GE+ +S + ++ II+ +++
Sbjct: 110 ----QYWTDKVNPAVWIAIFYVFIVIINLFGVKGYGEAEFWFSSIKILAIIGFIILSIIL 165
Query: 239 FAGAFEV----------DVSNWSPFAPNG-FKEILTGATVVFFAYVGFDAVANSAEESKK 287
G D ++ G FK + + F++ G + VA +A E+
Sbjct: 166 NCGGGPNHGYIGFRYWHDPGAFAGGTIGGRFKGVCSVFVTAAFSFGGTELVALTAGEAAN 225
Query: 288 PQRDLPIGILGSLLICAALYVGVSLVLTGM-VPY---------KFLDEDA-PLSDAFASR 336
P++ +P + Y+ +L L G VPY D A P A +
Sbjct: 226 PRKSIPRAAKRTFWRILVFYIL-TLFLIGFLVPYNDPRLLSSSSSSDSAASPFVIAIQNH 284
Query: 337 GLKYVSVLISFGAVAGLTTTLLVG---LYVQSRLYLGLGRDGLLPSIFAKV 384
G+K + + F AV L + L LY SR L GL P IFA V
Sbjct: 285 GIKVLPHI--FNAVI-LISVLSAANSSLYASSRTLYALAHQGLAPKIFAYV 332
|
[Transport and binding proteins, Amino acids, peptides and amines]. Length = 478 |
| >gnl|CDD|236904 PRK11387, PRK11387, S-methylmethionine transporter; Provisional | Back alignment and domain information |
|---|
Score = 66.0 bits (161), Expect = 2e-11
Identities = 93/394 (23%), Positives = 167/394 (42%), Gaps = 38/394 (9%)
Query: 51 TNDGEGLLRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGPGVTISFLLAGAASV-LNA 109
+ R + + LV++ +G +G G+F TG + G T+ L GA V L
Sbjct: 6 SQQAGQFKRTMKVRHLVMLSLGGVIGTGLFFNTGYIISTTGAAGTLLAYLIGALVVYLVM 65
Query: 110 LCYAELASRFPAVVGGAYLYAYTAFNELTAFLVFAQLMLDYHIGAASIARSLASYVVSIL 169
C EL+ P G ++YA T + V L + + S SL + +
Sbjct: 66 QCLGELSVAMPE-TGAFHVYAARYLGPATGYTVAWLYWLTWTVALGS---SLTAAGFCMQ 121
Query: 170 ELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGVGESSVLNSCMTVV 229
FP +P W +L L+ L +V E S + VV
Sbjct: 122 YWFP----QVPVWPW-------------CLLFCALIFGLNVVSTRFFAEGEFWFSLIKVV 164
Query: 230 KVIIVIVVIFAGAFE-VDVSNWSP-----------FAPNGFKEILTGATVVFFAYVGFDA 277
++ IV+ A F + + + SP + P+G IL V FA+ G +
Sbjct: 165 TILAFIVLGGAAIFGFIPMQDGSPAPGLRNLTAEGWFPHGGLPILMTMVAVNFAFSGTEL 224
Query: 278 VANSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLD-EDAPLSDAFASR 336
+ +A E++ P + +P+ I ++ +VG LVL ++P + E +P F
Sbjct: 225 IGIAAGETENPAKVIPVAIRTTIARLVIFFVGTVLVLAALIPMQQAGVEKSPFVLVFEKV 284
Query: 337 GLKYVSVLISFGAVAGLTTTLLVGLYVQSRLYLGLGRDGLLPSIFAKVHPKRHTPVHSQV 396
G+ Y + + +F + + + GLY R+ L +G LP+ FA++ KR P+ + +
Sbjct: 285 GIPYAADIFNFVILTAILSAANSGLYASGRMLWSLSNEGTLPACFARLT-KRGIPLTA-L 342
Query: 397 WVGIVAGILAGLFNVRVLSHI-LSVGTLTGYSVV 429
V ++ G+LA +V + +++ ++G++VV
Sbjct: 343 SVSMLGGLLALFSSVVAPDTVFVALSAISGFAVV 376
|
Length = 471 |
| >gnl|CDD|213912 TIGR04299, antiport_PotE, putrescine-ornithine antiporter | Back alignment and domain information |
|---|
Score = 64.1 bits (156), Expect = 6e-11
Identities = 81/364 (22%), Positives = 157/364 (43%), Gaps = 49/364 (13%)
Query: 59 RRLGLFELVLIGVGASVGAGIFVVTGTVARDAGPGVTISFLLAGAASVLNALCYAELASR 118
+++ + +L ++ +G+GI ++ +A+ G IS+L+ ++ A +A A
Sbjct: 4 KKMSVVQLTILTAVNMMGSGIIMLPTNLAQ-VGTMSIISWLVTAVGAMALAWAFAR-AGM 61
Query: 119 FPAVVGGAYLYAYTAFNELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKEN 178
+ + GG YA +F + F+ + I A+IA S Y
Sbjct: 62 YSSKSGGMGGYAEYSFGKAGNFMANYTYGVSLVIANAAIAISAVGY-------------- 107
Query: 179 IPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGVGESSVLN----------SCMTV 228
G E LG LS P+ +AL TI + W ++VLN S TV
Sbjct: 108 --------GAELLGAHLS-----PVQIALATIGVLW---IATVLNFGGARITGQISSFTV 151
Query: 229 VKVIIVIVVIFAGAF-----EVDVSNWSPFAPNGFKEILTGATVVFFAYVGFDAVANSAE 283
VII +V I + + +W+P F + + ++ +A++G ++ + +
Sbjct: 152 WGVIIPVVGISIIGWFWFSGTLYADSWNPHHAGFFSGVGSSISITLWAFLGLESACANTD 211
Query: 284 ESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVP-YKFLDEDAPLSDAFASRGLKYVS 342
+ P++++PI +LG + A +Y+ + V+ G+VP + + +AP AF+ V
Sbjct: 212 VVENPKKNVPIAVLGGTIGAAVMYIISTNVIAGIVPNMELANSNAPFGLAFSQMFNPTVG 271
Query: 343 VLISFGAVAGLTTTLLVGLYVQSRLYLGLGRDGLLPSIFAKVHPKRHTPVHSQVWVGIVA 402
++ V +LL + + ++ +G P IF+K TP+ + + I+
Sbjct: 272 KIVMGLMVISCFGSLLGWQFTIAEVFRSSADEGYFPKIFSKT-IGNGTPLIGMLIITILQ 330
Query: 403 GILA 406
+LA
Sbjct: 331 SLLA 334
|
Members of this protein family are putrescine-ornithine antiporter. They work together with an enzyme that decarboxylates ornithine to putrescine. This two-gene system has the net effect of removing a protein from the cytosol, providing transient resistance to acid conditions. Length = 430 |
| >gnl|CDD|163522 TIGR03810, arg_ornith_anti, arginine-ornithine antiporter | Back alignment and domain information |
|---|
Score = 64.3 bits (157), Expect = 7e-11
Identities = 78/361 (21%), Positives = 143/361 (39%), Gaps = 56/361 (15%)
Query: 59 RRLGLFELVLIGVGASVGAGIFVVTGTVARDAGPG-VTISFLLAGAASVLNALCYAELAS 117
++LGL L + VG+ +G+GIF + +A A G V I +++ G + A + LA+
Sbjct: 1 KKLGLGALTALVVGSMIGSGIFSLPSDMAAGAAAGAVLIGWVITGVGMLALAFSFQNLAN 60
Query: 118 RFPAVVGGAYLYAYTAFNELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKE 177
+ P + GG Y YA F F+ L +G + A L S ++ FP F
Sbjct: 61 KKPELDGGVYSYAKAGFGPFMGFISAWGYWLSAWLGNVAYATLLFS---TLGYFFPIFGG 117
Query: 178 NIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGVGESSVLNSCMTVVKVIIVIVV 237
G I A +LL + ++ GV ++ +N+ T+ K++ + V
Sbjct: 118 --------------GNNPPSIIGASVLLWCVHFLVLRGVEGAAFINTITTIAKLVPLFVF 163
Query: 238 IFAG--AFEVDV--------SNWSPFAPNGFKEILTGATVVFFAYVGFDAVA---NSAEE 284
I G AF+ D +N + ++ V + ++G + + AE+
Sbjct: 164 IVIGIFAFKGDTFTNDFWGNANGGFSLGSVMTQVKNMMLVTVWVFIGIEGASMLSARAEK 223
Query: 285 SKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLDED-----------APLSDAF 333
+ IG++G L I VL ++ Y + + L
Sbjct: 224 RSDVGKATVIGLIGVLAI---------YVLVSVLSYGIMTQAQLAGLKNPSMAYVLEHMV 274
Query: 334 ASRGLKYVSVLISFGAVAGLTTTLLVGLYVQSRLYLGLGRDGLLPSIFAKVHPKRHTPVH 393
+ G +VLI+ G + + L + + + L + +D L+P F K + P +
Sbjct: 275 GTWG----AVLINIGLIISILGAWLSWTLLPAEIPLLMAKDKLMPKYFGKEN-ANGAPTN 329
Query: 394 S 394
+
Sbjct: 330 A 330
|
Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2 [Transport and binding proteins, Amino acids, peptides and amines]. Length = 468 |
| >gnl|CDD|182622 PRK10655, potE, putrescine transporter; Provisional | Back alignment and domain information |
|---|
Score = 62.7 bits (153), Expect = 2e-10
Identities = 85/364 (23%), Positives = 156/364 (42%), Gaps = 49/364 (13%)
Query: 59 RRLGLFELVLIGVGASVGAGIFVVTGTVARDAGPGVTISFLLAGAASVLNALCYAELASR 118
++G+ +L ++ +G+GI ++ +A+ G +S+L+ S+ A +A+
Sbjct: 6 NKMGVVQLTILTAVNMMGSGIIMLPTKLAQ-VGTISILSWLVTAVGSMALAYAFAK-CGM 63
Query: 119 FPAVVGGAYLYAYTAFNELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKEN 178
F GG YA AF + F+ + I +IA S Y
Sbjct: 64 FSRKSGGMGGYAEYAFGKSGNFMANYTYGVSLLIANVAIAISAVGY-------------- 109
Query: 179 IPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGVGESSVLN----------SCMTV 228
G E G TLS P+ + L TI + W +V N S +TV
Sbjct: 110 --------GTELFGATLS-----PVQICLATIGVLW---LCTVANFGGARITGQISSVTV 153
Query: 229 VKVII-VIVVIFAGAF----EVDVSNWSPFAPNGFKEILTGATVVFFAYVGFDAVANSAE 283
VII V+ + G F + V+ W+P F + + + +A++G ++ +++
Sbjct: 154 WGVIIPVVGLSIIGWFWFSPSLYVAAWNPHHLPFFSAVGSSIAMTLWAFLGLESACANSD 213
Query: 284 ESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFL-DEDAPLSDAFASRGLKYVS 342
+ P+R++PI +LG L A +Y+ + V+ G+VP L + AP AFA V
Sbjct: 214 AVENPERNVPIAVLGGTLGAAVIYIVSTNVIAGIVPNMELANSTAPFGLAFAQMFNPTVG 273
Query: 343 VLISFGAVAGLTTTLLVGLYVQSRLYLGLGRDGLLPSIFAKVHPKRHTPVHSQVWVGIVA 402
++ V +LL + ++++ +G P IF++V K PV + + ++
Sbjct: 274 KIVMALMVMSCCGSLLGWQFTIAQVFKSSADEGYFPKIFSRVT-KVDAPVQGMLIIVVIQ 332
Query: 403 GILA 406
+L+
Sbjct: 333 SLLS 336
|
Length = 438 |
| >gnl|CDD|233178 TIGR00907, 2A0304, amino acid permease (GABA permease) | Back alignment and domain information |
|---|
Score = 59.4 bits (144), Expect = 3e-09
Identities = 81/376 (21%), Positives = 150/376 (39%), Gaps = 57/376 (15%)
Query: 92 PGVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNELTAFLVFAQLMLDYH 151
+ +++AGA S+ AL AEL+S +P G + A A F + +
Sbjct: 47 MSIVWGWIIAGAGSICIALSLAELSSAYPTSGGQYFWSAKLAPPRQMPFASWMTGWFNLA 106
Query: 152 ---IGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALL 208
G AS S+A ++ I+ L +E IP+ G + I+++ ++ +L
Sbjct: 107 GQVAGTASTDLSVAQLILGIVSLTTPGREYIPT-----RWHIFGIMIGIHLIHALINSLP 161
Query: 209 TIVLCWGVGESSVLNSCMTVVKVIIVIVV-----------IFAGAFEVDVSNWSPFAPNG 257
T L + S+ S + + + I ++ +F F W P
Sbjct: 162 TKWLPR-ITSSAAYWSLLGFLTICITLLACKSPKFNDGKFVF-TNFNNSTGGWKPGGFAF 219
Query: 258 FKEILTGATVVFFAYVGFDAVANSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGM 317
+L A ++ G+D A+ AEE + P+ P I+G++ I ++VL
Sbjct: 220 LLGLLNPA----WSMTGYDGTAHMAEEIENPEVVGPRAIIGAVAIGIVTGFCFNIVLF-- 273
Query: 318 VPYKFLDEDAPLS------------DAFASRGLKYVSVLISFGAVAGLTTTLLVGLYVQS 365
+ D D+ +S +A ++ + + T + S
Sbjct: 274 --FSMGDIDSLISSTTGQPIAQIFYNALGNKAGAIFLLCLILVTSFFCAIT---CMTANS 328
Query: 366 RLYLGLGRDGLLP--SIFAKVHPKRHTPVHSQVWVGIVAGILAGLFNVRVLSHILSVGTL 423
R+ RDG LP ++++V+P+ P+++ VW+ V IL GL L +G+
Sbjct: 329 RMIYAFSRDGGLPFSPLWSRVNPRTQVPLNA-VWLSAVWIILIGL---------LGLGSS 378
Query: 424 TGY-SVVSACVIALRW 438
T + ++ S C +AL
Sbjct: 379 TAFQAIFSVCTVALDV 394
|
[Transport and binding proteins, Amino acids, peptides and amines]. Length = 482 |
| >gnl|CDD|236667 PRK10249, PRK10249, phenylalanine transporter; Provisional | Back alignment and domain information |
|---|
Score = 57.7 bits (139), Expect = 9e-09
Identities = 72/377 (19%), Positives = 157/377 (41%), Gaps = 32/377 (8%)
Query: 39 LRAKTLTAPSVRTNDGEGLLRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGPGVTISF 98
++ + + +N L R L + LI +G ++G G+F+ G + AGP V + +
Sbjct: 1 MKNASTVSEDTASNQEPTLHRGLHNRHIQLIALGGAIGTGLFLGIGPAIQMAGPAVLLGY 60
Query: 99 LLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNELTAFLVFAQLMLDYHIGAASIA 158
+AG + L E+ P V G +AY + FL + + + +
Sbjct: 61 GVAGIIAFLIMRQLGEMVVEEP-VSGSFAHFAYKYWGPFAGFLSGWNYWVMFVLVGMAEL 119
Query: 159 RSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGVGE 218
+ Y+ ++ ++P+WI F I++ + +V GE
Sbjct: 120 TAAGIYM-------QYWFPDVPTWIWAAA--FF-----------IIINAVNLVNVRLYGE 159
Query: 219 SSVLNSCMTVVKVIIVIV----VIFAG-----AFEVDVSNWSPFAPNGFKEILTGATVVF 269
+ + + V+ +I +I ++F+G A ++ + F G+ ++ V+
Sbjct: 160 TEFWFALIKVLAIIGMIGFGLWLLFSGHGGEKASIDNLWRYGGFFATGWNGLILSLAVIM 219
Query: 270 FAYVGFDAVANSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLDED-AP 328
F++ G + + +A E++ P++ +P + + Y+G +VL + P+ + + +P
Sbjct: 220 FSFGGLELIGITAAEARDPEKSIPKAVNQVVYRILLFYIGSLVVLLALYPWVEVKSNSSP 279
Query: 329 LSDAFASRGLKYVSVLISFGAVAGLTTTLLVGLYVQSRLYLGLGRDGLLPSIFAKVHPKR 388
F + V+ ++F + + G+Y SR+ GL G P +V +R
Sbjct: 280 FVMIFHNLDSNVVASALNFVILVASLSVYNSGVYSNSRMLFGLSVQGNAPKFLTRV-SRR 338
Query: 389 HTPVHSQVWVGIVAGIL 405
P++S + G + ++
Sbjct: 339 GVPINSLMLSGAITSLV 355
|
Length = 458 |
| >gnl|CDD|213911 TIGR04298, his_histam_anti, histidine-histamine antiporter | Back alignment and domain information |
|---|
Score = 51.9 bits (124), Expect = 5e-07
Identities = 74/359 (20%), Positives = 145/359 (40%), Gaps = 38/359 (10%)
Query: 60 RLGLFELVLIGVGASVGAGIFVVTGTVARDAGPGVTISFLLAGAASVLNALCYAELASRF 119
++G+ L L+ +G+G+F++ +A G ++ + AL +A+ +
Sbjct: 1 KMGVIALTLVTASNMMGSGVFLLPTNLA-GIGAISIFGWIFTIIGVIALALVFAKTSLIH 59
Query: 120 PAVVGGAYLYAYTAFNELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENI 179
+ GG YA AF F + IG ++ L + V + FP K+
Sbjct: 60 ERI-GGIVAYARDAFGPFIGFQSTIAYWISAWIGNVAL---LVAGVGYLAFFFPELKDPT 115
Query: 180 PSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGVGESSVLNSCMTVVKVIIVIVVIF 239
GT I A I+L + +G + S + + +++ V
Sbjct: 116 V------------GTTYGCIAAIIILWAFVFLASFGAKVAGRAQSFTAICGLAVILGVGI 163
Query: 240 AGAF----EVDVSNWSPFAPNGFKEILTGATVVFFAYVGFDAVANSAEESKKPQRDLPIG 295
G F E+ + + + F I+ A++ + ++G ++ S + + P++ +P
Sbjct: 164 FGWFWFKPEMYLEVINATGNSNFSAIIAAASIALWGFLGIESAVVSTGQVENPEKTVPKA 223
Query: 296 ILGSLLICAALYVGVSLVLTGMVPYKFL-DEDAPLSDA--------FASRGLKYVSVLIS 346
+ LLI A YV V+ G++P++ L + AP +DA A +S++
Sbjct: 224 TVMGLLIAAVCYVASCTVIAGIIPHEVLINSAAPFADAAKYMFDNELAGNIASALSIIAC 283
Query: 347 FGAVAGLTTTLLVGLYVQSRLYLGLGRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGIL 405
FG+++G +QS GL P FA ++ K P+ S ++ I+ +
Sbjct: 284 FGSISGW-------FILQSEAPRAAAEQGLFPKFFADLN-KNDVPMKSLIFTAILMCCV 334
|
Members of this protein family are antiporters that exchange histidine with histamine, product of histidine decarboxylation. A system consisting of this protein, and a histidine decarboxylase encoded by an adjacent gene, creates decarboxylation/antiport proton-motive cycle that provides a transient resistance to acidic conditions. Length = 429 |
| >gnl|CDD|182297 PRK10197, PRK10197, gamma-aminobutyrate transporter; Provisional | Back alignment and domain information |
|---|
Score = 50.4 bits (120), Expect = 2e-06
Identities = 79/367 (21%), Positives = 144/367 (39%), Gaps = 57/367 (15%)
Query: 68 LIGVGASVGAGIFVVTGTVARDAGPGVTISFLLAGAASVLNALCYAELASRFPAVVGGAY 127
++ + +GA +FV + +AGP V +++L AG V+ AE+A P G
Sbjct: 1 MLSIAGVIGASLFVGSSVAIAEAGPAVLLAYLFAGLLVVMIMRMLAEMAVATPDT-GSFS 59
Query: 128 LYAYTAFNELTAFLV------FAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPS 181
YA A + + F L++ A++ L S+V IP
Sbjct: 60 TYADKAIGRWAGYTIGWLYWWFWVLVIPLEANIAAMI--LHSWV-----------PGIPI 106
Query: 182 WIGHGGEEFLGGTLSINILAPILLALLTIVLCWGVGESSVLNSCMTVVKVIIVIVVIFAG 241
W+ S+ I + + L V +G E + + KVI ++ IF G
Sbjct: 107 WL-----------FSLVITLALTGSNLLSVKNYGEFEF-----WLALCKVIAILAFIFLG 150
Query: 242 AFEV-------DVSNWSP------FAPNGFKEILTGATVVFFAYVGFDAVANSAEESKKP 288
A + +VS S F PNGF +L+ + F+++G + V +A ES P
Sbjct: 151 AVAISGFYPYAEVSGISRLWDSGGFMPNGFGAVLSAMLITMFSFMGAEIVTIAAAESDTP 210
Query: 289 QRDLPIGILGSLLICAALYVGVSLVLTGMVPYKF--LDEDAPLSDAFASRGLKYVSVLIS 346
++ + + + Y+ V+ ++P+ L + + +++
Sbjct: 211 EKHIVRATNSVIWRISIFYLCSIFVVVALIPWNMPGLKAVGSYRSVLELLNIPHAKLIMD 270
Query: 347 FGAVAGLTTTLLVGLYVQSRLYLGLGRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGILA 406
+ +T+ L LY SR+ L R G P++ K++ + TP +V ++ A
Sbjct: 271 CVILLSVTSCLNSALYTASRMLYSLSRRGDAPAVMGKINRSK-TP-----YVAVLLSTGA 324
Query: 407 GLFNVRV 413
V V
Sbjct: 325 AFLTVVV 331
|
Length = 446 |
| >gnl|CDD|182694 PRK10746, PRK10746, putative transport protein YifK; Provisional | Back alignment and domain information |
|---|
Score = 49.0 bits (117), Expect = 4e-06
Identities = 82/352 (23%), Positives = 142/352 (40%), Gaps = 45/352 (12%)
Query: 51 TNDGEGLLRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGPGVTISFLLAGA-----AS 105
++ L R L + LI +G ++G G+F+ + + AGP V +++++AG
Sbjct: 2 ADNKPELQRGLEARHIELIALGGTIGVGLFMGAASTLKWAGPSVLLAYIIAGLFVFFIMR 61
Query: 106 VLNALCYAELASRFPAVVGGAYLYAYTAFNELTAFLVFAQLMLDYHIGAASIARSLASYV 165
+ + + E + AV Y+ + F LTA+ + M +G + I ++ YV
Sbjct: 62 SMGEMLFLEPVTGSFAVYAHRYMSPF--FGYLTAWSYWFMWM---AVGISEIT-AIGVYV 115
Query: 166 VSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGVGESSVLNSC 225
F+ + WI ++ +A + LA L V +G E
Sbjct: 116 -------QFWFPEMAQWIP-----------ALIAVALVALANLAAVRLYGEIE---FWFA 154
Query: 226 MTVVKVIIVIVVIFAGAFEVDVSN-WSP-----------FAPNGFKEILTGATVVFFAYV 273
M V IIV++VI G N F G+K LT +V +Y
Sbjct: 155 MIKVTTIIVMIVIGLGVIFFGFGNGGQSIGFSNLTEHGGFFAGGWKGFLTALCIVVASYQ 214
Query: 274 GFDAVANSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFL-DEDAPLSDA 332
G + + +A E+K PQ L + L YVG V+ + P+ + +P
Sbjct: 215 GVELIGITAGEAKNPQVTLRSAVGKVLWRILIFYVGAIFVIVTIFPWNEIGSNGSPFVLT 274
Query: 333 FASRGLKYVSVLISFGAVAGLTTTLLVGLYVQSRLYLGLGRDGLLPSIFAKV 384
FA G+ + +I+F + + G+Y R+ L ++ LP+ AKV
Sbjct: 275 FAKIGITAAAGIINFVVLTAALSGCNSGMYSCGRMLYALAKNRQLPAAMAKV 326
|
Length = 461 |
| >gnl|CDD|182566 PRK10580, proY, putative proline-specific permease; Provisional | Back alignment and domain information |
|---|
Score = 48.3 bits (115), Expect = 8e-06
Identities = 82/368 (22%), Positives = 151/368 (41%), Gaps = 41/368 (11%)
Query: 57 LLRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGPGVTISFLLAGAASVLNALCYAELA 116
L R L + + +G+++G G+F + + AGP V +++++ G A+ + E++
Sbjct: 7 LKRGLSTRHIRFMALGSAIGTGLFYGSADAIKMAGPSVLLAYIIGGVAAYIIMRALGEMS 66
Query: 117 SRFPAVVGGAYLYAYTAFNELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFK 176
PA + YA L ++ + I A + + Y+ FP
Sbjct: 67 VHNPAASSFS-RYAQENLGPLAGYITGWTYCFEILIVAIADVTAFGIYMGV---WFP--- 119
Query: 177 ENIPSWIGHGGEEFLGGTLSIN-ILAPILLALLTIVLCWGVGESSVLNSCMTVVKVIIVI 235
+P WI LS+ I+ + L + + GE S V +II+I
Sbjct: 120 -TVPHWIW---------VLSVVLIICAVNLMSVKVF-----GELEFWFSFFKVATIIIMI 164
Query: 236 VV--------IFAGAFEVDVSN-WSP--FAPNGFKEILTGATVVFFAYVGFDAVANSAEE 284
V I G + N WS F NG+ ++ +V FAY G + + +A E
Sbjct: 165 VAGIGIIIWGIGNGGQPTGIHNLWSNGGFFSNGWLGMVMSLQMVMFAYGGIEIIGITAGE 224
Query: 285 SKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLDED-APLSDAFASRGLKYVSV 343
+K P++ +P I + YVG V+ + P+ + + +P F G+ + +
Sbjct: 225 AKDPEKSIPRAINSVPMRILVFYVGTLFVIMSIYPWNQVGTNGSPFVLTFQHMGITFAAS 284
Query: 344 LISFGAVAGLTTTLLVGLYVQSRLYLGLGRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAG 403
+++F + + + ++ R+ G+ G P IF+K +R P WV ++
Sbjct: 285 ILNFVVLTASLSAINSDVFGVGRMLHGMAEQGSAPKIFSKT-SRRGIP-----WVTVLVM 338
Query: 404 ILAGLFNV 411
A LF V
Sbjct: 339 TTALLFAV 346
|
Length = 457 |
| >gnl|CDD|236830 PRK11049, PRK11049, D-alanine/D-serine/glycine permease; Provisional | Back alignment and domain information |
|---|
Score = 47.4 bits (113), Expect = 1e-05
Identities = 45/179 (25%), Positives = 80/179 (44%), Gaps = 17/179 (9%)
Query: 229 VKVIIVIVVIFAGAFEVDVSNWSP---------------FAPNGFKEILTGATVVFFAYV 273
+K++ ++ +I G V + SP P G G + FA+V
Sbjct: 166 IKIVAIVALIVVGLVMVAMHFQSPTGVEASFAHLWNDGGMFPKGLSGFFAGFQIAVFAFV 225
Query: 274 GFDAVANSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLDED-APLSDA 332
G + V +A E+K P++ LP I + YV +V+ + P+ + D +P +
Sbjct: 226 GIELVGTTAAETKDPEKSLPRAINSIPIRIIMFYVFALIVIMSVTPWSSVVPDKSPFVEL 285
Query: 333 FASRGLKYVSVLISFGAVAGLTTTLLVGLYVQSRLYLGLGRDGLLPSIFAKVHPKRHTP 391
F GL + +I+F + ++ G++ SR+ GL ++G+ P FAK+ KR P
Sbjct: 286 FVLVGLPAAASVINFVVLTSAASSANSGVFSTSRMLFGLAQEGVAPKAFAKL-SKRAVP 343
|
Length = 469 |
| >gnl|CDD|182458 PRK10435, cadB, lysine/cadaverine antiporter; Provisional | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 7e-05
Identities = 62/268 (23%), Positives = 113/268 (42%), Gaps = 32/268 (11%)
Query: 59 RRLGLFELVLIGVGASVGAGIFVVTGTVARDAGPGVTISFLLAGAASVLNALCYAELASR 118
+++GLF + G +G+GI ++ +A + ++++ ++ A YA LA++
Sbjct: 5 KKIGLFACTGVVAGNMMGSGIALLPANLASIGSIAI-WGWIISIIGAMSLAYVYARLATK 63
Query: 119 FPAVVGGAYLYAYTAFNELTAFLVFAQLMLDYH---IGAASIARSLASYVVSILELFPFF 175
P GG YA E++ F +L YH IG +I + SY+ + FP
Sbjct: 64 NPQQ-GGPIAYA----GEISPAFGFQTGVLYYHANWIGNLAIGITAVSYLST---FFPVL 115
Query: 176 KENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGVGESSVLNSCMTVVKVIIVI 235
+ IP+ I I I+ + T V G S L + V+ +I V+
Sbjct: 116 NDPIPAGIA-----------CIAIVW-----VFTFVNMLGGTWVSRLTTIGLVLVLIPVV 159
Query: 236 VVIFAGAFEVDVS----NWSPFAPNGFKEILTGATVVFFAYVGFDAVANSAEESKKPQRD 291
G D + NW+ I+ + +A+VG ++ A S K P+R
Sbjct: 160 GTAIVGWHWFDAATYAANWNTSDTTDGHAIIKSILLCLWAFVGVESAAVSTGMVKNPKRT 219
Query: 292 LPIGILGSLLICAALYVGVSLVLTGMVP 319
+P+ + + +Y+ + V++GM P
Sbjct: 220 VPLATMLGTGLAGIIYIAATQVISGMFP 247
|
Length = 435 |
| >gnl|CDD|163525 TIGR03813, put_Glu_GABA_T, putative glutamate/gamma-aminobutyrate antiporter | Back alignment and domain information |
|---|
Score = 43.3 bits (102), Expect = 3e-04
Identities = 60/304 (19%), Positives = 124/304 (40%), Gaps = 40/304 (13%)
Query: 227 TVVKVIIVIVV-----IFAGAFEVDVSNWSPFAPN--GFKEILTGATVVFFAYVGFDAVA 279
T++ I++++ + G ++ + W P+ F ++ A++ F Y G + A
Sbjct: 157 TIIPAAILVILGISYLLTGGESQIPLR-WDDAFPDFTNFDNVVLAASI-FLFYAGMEMNA 214
Query: 280 NSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLDEDAPL----SDAFAS 335
++ P ++ PI IL + L ++V +L + ++P + + L +AF
Sbjct: 215 VHVKDVDNPDKNYPIAILIAALGTVLIFVLGTLAIAFIIPREDISLTQSLLVAFDNAFHW 274
Query: 336 RGLKYVSVLISFGAVAGLTTTLLVGLYVQSRLYLGLGRDGLLPSIFAKVHPKRHTPVHSQ 395
GL ++ +++F G+ ++ + S L + + G LP+ F K + K P+H
Sbjct: 275 AGLSWLGPILAFALAIGVLAGVVTWVAGPSSGMLAVAKAGYLPTFFQKTN-KNGMPIHIM 333
Query: 396 VWVGIVAGILAGLFNV--------RVLSHILSVGTLTGYSVVSACVIALRWKDRTSRNDS 447
GI +L+ LF V ++LS + + L Y ++ A I LR+ + R
Sbjct: 334 FVQGIAVSVLSVLFVVMPSVQAAFQILSQLTVILYLVMYLLMFASAIYLRYS-QPDRPRP 392
Query: 448 SRLTSAWRQGVICLIIIACCGFGAGLFYRI-------------NASYILLIVAVVIAVLA 494
R+ G+ + I GF + Y+ L++ + +
Sbjct: 393 YRIPG----GLAGMWFIGGLGFVGSALAFVLSFIPPSQIGTGSPTRYVGLLIGLAALFVT 448
Query: 495 SAML 498
+ L
Sbjct: 449 APFL 452
|
Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain. Length = 474 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 578 | |||
| TIGR00906 | 557 | 2A0303 cationic amino acid transport permease. | 100.0 | |
| PRK15049 | 499 | L-asparagine permease; Provisional | 100.0 | |
| PRK11387 | 471 | S-methylmethionine transporter; Provisional | 100.0 | |
| PRK10746 | 461 | putative transport protein YifK; Provisional | 100.0 | |
| PRK11357 | 445 | frlA putative fructoselysine transporter; Provisio | 100.0 | |
| TIGR00908 | 442 | 2A0305 ethanolamine permease. The three genes used | 100.0 | |
| TIGR00909 | 429 | 2A0306 amino acid transporter. | 100.0 | |
| PRK10249 | 458 | phenylalanine transporter; Provisional | 100.0 | |
| PRK10644 | 445 | arginine:agmatin antiporter; Provisional | 100.0 | |
| COG0833 | 541 | LysP Amino acid transporters [Amino acid transport | 100.0 | |
| PRK10655 | 438 | potE putrescine transporter; Provisional | 100.0 | |
| PRK10836 | 489 | lysine transporter; Provisional | 100.0 | |
| PRK10238 | 456 | aromatic amino acid transporter; Provisional | 100.0 | |
| TIGR01773 | 452 | GABAperm gamma-aminobutyrate permease. GabP is hig | 100.0 | |
| PRK10580 | 457 | proY putative proline-specific permease; Provision | 100.0 | |
| PRK11049 | 469 | D-alanine/D-serine/glycine permease; Provisional | 100.0 | |
| PRK10435 | 435 | cadB lysine/cadaverine antiporter; Provisional | 100.0 | |
| KOG1286 | 554 | consensus Amino acid transporters [Amino acid tran | 100.0 | |
| COG1113 | 462 | AnsP Gamma-aminobutyrate permease and related perm | 100.0 | |
| TIGR00911 | 501 | 2A0308 L-type amino acid transporter. | 100.0 | |
| TIGR00905 | 473 | 2A0302 transporter, basic amino acid/polyamine ant | 100.0 | |
| TIGR00913 | 478 | 2A0310 amino acid permease (yeast). | 100.0 | |
| PRK10197 | 446 | gamma-aminobutyrate transporter; Provisional | 100.0 | |
| KOG1287 | 479 | consensus Amino acid transporters [Amino acid tran | 100.0 | |
| PRK11021 | 410 | putative transporter; Provisional | 100.0 | |
| TIGR03810 | 468 | arg_ornith_anti arginine/ornithine antiporter. Mem | 100.0 | |
| TIGR00930 | 953 | 2a30 K-Cl cotransporter. | 100.0 | |
| TIGR00907 | 482 | 2A0304 amino acid permease (GABA permease). | 100.0 | |
| KOG1289 | 550 | consensus Amino acid transporters [Amino acid tran | 100.0 | |
| TIGR03428 | 475 | ureacarb_perm permease, urea carboxylase system. A | 100.0 | |
| TIGR03813 | 474 | put_Glu_GABA_T putative glutamate/gamma-aminobutyr | 100.0 | |
| COG0531 | 466 | PotE Amino acid transporters [Amino acid transport | 100.0 | |
| TIGR00910 | 507 | 2A0307_GadC glutamate:gamma-aminobutyrate antiport | 100.0 | |
| PF13520 | 426 | AA_permease_2: Amino acid permease; PDB: 3NCY_A 3G | 100.0 | |
| PRK15238 | 496 | inner membrane transporter YjeM; Provisional | 100.0 | |
| PF00324 | 478 | AA_permease: Amino acid permease; InterPro: IPR004 | 100.0 | |
| TIGR00837 | 381 | araaP aromatic amino acid transport protein. aroma | 99.97 | |
| KOG2082 | 1075 | consensus K+/Cl- cotransporter KCC1 and related tr | 99.96 | |
| KOG1288 | 945 | consensus Amino acid transporters [Amino acid tran | 99.95 | |
| TIGR00912 | 359 | 2A0309 spore germination protein (amino acid perme | 99.92 | |
| KOG2083 | 643 | consensus Na+/K+ symporter [Inorganic ion transpor | 99.87 | |
| PHA02764 | 399 | hypothetical protein; Provisional | 99.86 | |
| TIGR00796 | 378 | livcs branched-chain amino acid uptake carrier. tr | 99.83 | |
| TIGR00814 | 397 | stp serine transporter. The HAAAP family includes | 99.78 | |
| PF03222 | 394 | Trp_Tyr_perm: Tryptophan/tyrosine permease family; | 99.76 | |
| PRK10483 | 414 | tryptophan permease; Provisional | 99.69 | |
| PRK09664 | 415 | tryptophan permease TnaB; Provisional | 99.68 | |
| PF03845 | 320 | Spore_permease: Spore germination protein; InterPr | 99.68 | |
| PRK15132 | 403 | tyrosine transporter TyrP; Provisional | 99.67 | |
| COG0814 | 415 | SdaC Amino acid permeases [Amino acid transport an | 99.61 | |
| PRK13629 | 443 | threonine/serine transporter TdcC; Provisional | 99.57 | |
| KOG1303 | 437 | consensus Amino acid transporters [Amino acid tran | 99.25 | |
| PF01235 | 416 | Na_Ala_symp: Sodium:alanine symporter family; Inte | 99.25 | |
| PLN03074 | 473 | auxin influx permease; Provisional | 99.2 | |
| PRK11375 | 484 | allantoin permease; Provisional | 99.18 | |
| KOG1304 | 449 | consensus Amino acid transporters [Amino acid tran | 99.16 | |
| PF13906 | 51 | AA_permease_C: C-terminus of AA_permease | 99.14 | |
| PTZ00206 | 467 | amino acid transporter; Provisional | 99.14 | |
| COG1115 | 452 | AlsT Na+/alanine symporter [Amino acid transport a | 99.06 | |
| TIGR00835 | 425 | agcS amino acid carrier protein. Members of the AG | 99.06 | |
| COG3949 | 349 | Uncharacterized membrane protein [Function unknown | 98.91 | |
| COG1457 | 442 | CodB Purine-cytosine permease and related proteins | 98.9 | |
| PRK11017 | 404 | codB cytosine permease; Provisional | 98.77 | |
| PRK09442 | 483 | panF sodium/panthothenate symporter; Provisional | 98.6 | |
| PF01490 | 409 | Aa_trans: Transmembrane amino acid transporter pro | 98.58 | |
| TIGR00800 | 442 | ncs1 NCS1 nucleoside transporter family. The NCS1 | 98.5 | |
| COG1953 | 497 | FUI1 Cytosine/uracil/thiamine/allantoin permeases | 98.39 | |
| PF05525 | 427 | Branch_AA_trans: Branched-chain amino acid transpo | 98.33 | |
| TIGR02119 | 471 | panF sodium/pantothenate symporter. Pantothenate ( | 98.18 | |
| TIGR00813 | 407 | sss transporter, SSS family. have different number | 98.16 | |
| COG0733 | 439 | Na+-dependent transporters of the SNF family [Gene | 98.1 | |
| PRK15433 | 439 | branched-chain amino acid transport system 2 carri | 97.85 | |
| KOG1305 | 411 | consensus Amino acid transporter protein [Amino ac | 97.85 | |
| PF00474 | 406 | SSF: Sodium:solute symporter family; InterPro: IPR | 97.84 | |
| TIGR02121 | 487 | Na_Pro_sym sodium/proline symporter. This family c | 97.83 | |
| PRK12488 | 549 | acetate permease; Provisional | 97.77 | |
| TIGR02358 | 386 | thia_cytX probable hydroxymethylpyrimidine transpo | 97.77 | |
| PRK15419 | 502 | proline:sodium symporter PutP; Provisional | 97.71 | |
| PRK00701 | 439 | manganese transport protein MntH; Reviewed | 97.68 | |
| PF01566 | 358 | Nramp: Natural resistance-associated macrophage pr | 97.65 | |
| PRK10484 | 523 | putative transporter; Provisional | 97.64 | |
| TIGR02711 | 549 | symport_actP cation/acetate symporter ActP. Member | 97.62 | |
| COG1914 | 416 | MntH Mn2+ and Fe2+ transporters of the NRAMP famil | 97.54 | |
| PF02133 | 440 | Transp_cyt_pur: Permease for cytosine/purines, ura | 97.48 | |
| PLN00151 | 852 | potassium transporter; Provisional | 97.42 | |
| PRK09395 | 551 | actP acetate permease; Provisional | 97.35 | |
| PF02705 | 534 | K_trans: K+ potassium transporter; InterPro: IPR00 | 97.35 | |
| COG1114 | 431 | BrnQ Branched-chain amino acid permeases [Amino ac | 97.32 | |
| COG0591 | 493 | PutP Na+/proline symporter [Amino acid transport a | 97.29 | |
| PF02028 | 485 | BCCT: BCCT family transporter; InterPro: IPR000060 | 97.29 | |
| TIGR03648 | 552 | Na_symport_lg probable sodium:solute symporter, VC | 97.28 | |
| KOG2466 | 572 | consensus Uridine permease/thiamine transporter/al | 97.04 | |
| PLN00150 | 779 | potassium ion transporter family protein; Provisio | 97.04 | |
| PLN00149 | 779 | potassium transporter; Provisional | 96.99 | |
| PRK10745 | 622 | trkD potassium transport protein Kup; Provisional | 96.57 | |
| TIGR00794 | 688 | kup potassium uptake protein. Proteins of the KUP | 96.44 | |
| PLN00148 | 785 | potassium transporter; Provisional | 95.85 | |
| PRK09928 | 679 | choline transport protein BetT; Provisional | 93.87 | |
| PRK09950 | 506 | putative transporter; Provisional | 93.82 | |
| TIGR00910 | 507 | 2A0307_GadC glutamate:gamma-aminobutyrate antiport | 92.68 | |
| KOG3660 | 629 | consensus Sodium-neurotransmitter symporter [Signa | 91.2 | |
| TIGR03813 | 474 | put_Glu_GABA_T putative glutamate/gamma-aminobutyr | 91.06 | |
| PF00209 | 523 | SNF: Sodium:neurotransmitter symporter family; Int | 90.1 | |
| COG4025 | 284 | Predicted membrane protein [Function unknown] | 89.87 | |
| COG3158 | 627 | Kup K+ transporter [Inorganic ion transport and me | 88.98 | |
| TIGR00842 | 453 | bcct choline/carnitine/betaine transport. properti | 86.04 | |
| COG4145 | 473 | PanF Na+/panthothenate symporter [Coenzyme metabol | 85.54 | |
| PRK15238 | 496 | inner membrane transporter YjeM; Provisional | 83.27 | |
| KOG4303 | 524 | consensus Vesicular inhibitory amino acid transpor | 83.26 | |
| PRK03356 | 504 | L-carnitine/gamma-butyrobetaine antiporter; Provis | 81.35 | |
| TIGR01197 | 390 | nramp NRAMP (natural resistance-associated macroph | 81.19 |
| >TIGR00906 2A0303 cationic amino acid transport permease | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-66 Score=557.66 Aligned_cols=521 Identities=36% Similarity=0.632 Sum_probs=419.6
Q ss_pred hhhhhhhhcccCCCCcCccCCCCCCcccccChhHHHHHHhhhhhhhhHHHHHHHHH-hhhCcHHHHHHHHHHHHHHHHHH
Q 008094 32 SHFWSSALRAKTLTAPSVRTNDGEGLLRRLGLFELVLIGVGASVGAGIFVVTGTVA-RDAGPGVTISFLLAGAASVLNAL 110 (578)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~l~r~l~~~~~~~~~i~~~ig~g~~~~~~~~~-~~~G~~~~~~~ii~~l~~~~~a~ 110 (578)
.++.++..|+|+.+++ ++++++++|+++.+|++++++|.++|+|+|..++... ..+||+.+++|+++++.+++.++
T Consensus 4 ~~~~~~~~r~k~~~~~---~~~~~~L~r~L~~~~l~~l~ig~viGsGIf~l~g~~a~~~aGp~~~ls~liagv~~l~~al 80 (557)
T TIGR00906 4 LTFARCLIRRKIVDLD---SREESKMKRCLTTWDLMALGIGSTIGAGIYVLTGEVARNDSGPAIVLSFLISGLAAVLSGF 80 (557)
T ss_pred HHHHHHHhccCCcccc---cccccchhhcCCHHHHHHHHhhhhhcchhhhhhhHHHHhccCcHHHHHHHHHHHHHHHHHH
Confidence 4566677777776542 2245579999999999999999999999999999876 46899999999999999999999
Q ss_pred HHHHHhhcCCCCccchhhhhHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-ccccCCCCccccCCCcc
Q 008094 111 CYAELASRFPAVVGGAYLYAYTAFNELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELF-PFFKENIPSWIGHGGEE 189 (578)
Q Consensus 111 ~~ael~~~~P~~~GG~y~~~~~~~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 189 (578)
+|+|+++++|+ +||.|.|+++.+|+..||++||.++++|....+..+..++.|+..+++.. ..+... ..... ..
T Consensus 81 ~yaElas~~P~-sGg~Y~y~~~~~G~~~gfi~GW~~~l~~~~~~a~va~~~s~yl~~ll~~~~~~~~~~---~~~~~-~~ 155 (557)
T TIGR00906 81 CYAEFGARVPK-AGSAYLYSYVTVGELWAFITGWNLILEYVIGTAAVARSWSAYFDELLNKQIGQFRRT---YFKLN-YD 155 (557)
T ss_pred HHHHHHHhCCC-CCcceeeHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccc---ccccc-CC
Confidence 99999999999 99999999999999999999999999999999999999999998876521 100000 00000 00
Q ss_pred ccccchhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCCCC--------CCCCCChHHH
Q 008094 190 FLGGTLSINILAPILLALLTIVLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEVDVSNWS--------PFAPNGFKEI 261 (578)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~--------~~~~~g~~~~ 261 (578)
... ....+++++++++.+.+|++|+|..+++|++++.++++.++++++.+..+.+.+||. ++.|.|+.++
T Consensus 156 ~l~--~~~~~~a~~ii~l~~~ln~~Gik~s~~v~~i~~~iki~~l~~~iv~g~~~~~~~~~~~~~~~~~~~f~p~g~~g~ 233 (557)
T TIGR00906 156 GLA--EYPDFFAVCLILLLAVLLSFGVKESAWVNKIFTAINILVLLFVIIAGFTKADVANWSITEEKGAGGFMPYGFTGV 233 (557)
T ss_pred ccc--ccchHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHhhhHHHhhCCchhccccccccCCCCCCcchHHH
Confidence 000 112346677778888999999999999999999999999988888888776666665 5677788899
Q ss_pred HHHHHHHHhhccchHHHhhhhhhhcCCCCChhHHHHHHHHHHHHHHHHHHHHHhccccccccCCCChHHHHHHHcChhHH
Q 008094 262 LTGATVVFFAYVGFDAVANSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLDEDAPLSDAFASRGLKYV 341 (578)
Q Consensus 262 ~~~~~~~~~~~~G~e~~~~~~~E~k~P~k~ip~a~~~s~~~~~i~y~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 341 (578)
+.+...++|+|.|+|.+++++||+|||+||+|||++.++.+++++|++..++.....|+++++.++|+.++++..+.++.
T Consensus 234 l~g~~~~~faf~Gfd~v~~~aeE~knP~r~iP~aii~sl~i~~vlY~lv~~~l~~~vp~~~l~~~~p~~~a~~~~g~~~~ 313 (557)
T TIGR00906 234 LSGAATCFFAFIGFDAIATTGEEVKNPQRAIPIGIVTSLLVCFVAYFLMSAALTLMMPYYLLDPDAPFPVAFEYVGWGPA 313 (557)
T ss_pred HHHHHHHHHHHhhHHHHHHhHHhccCccccccHHHHHHHHHHHHHHHHHHHHHhccccHHHhCcCcHHHHHHHHcCchHH
Confidence 99999999999999999999999999999999999999999999999999999999999988888899999998888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhhhhcCCCCcchhHHHHHHHHHHHHHhhcCHHHHHHHHHHH
Q 008094 342 SVLISFGAVAGLTTTLLVGLYVQSRLYLGLGRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGILAGLFNVRVLSHILSVG 421 (578)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP~~~~~~~~r~~~P~~ail~~~~i~~i~~~~~~~~~l~~~~~~~ 421 (578)
..++.++.+++.+++.++.+++.+|++|+|||||.+|++|+|+|||+++|++|+++.++++.++.++.+++.+.++.+++
T Consensus 314 ~~ii~~~~~~~~~~sl~~~~~~~sRil~amarDGlLP~~fakv~~r~~tP~~Ail~~~iv~~il~~~~~~~~l~~l~sig 393 (557)
T TIGR00906 314 KYIVAVGALCGMSTSLLGGMFPLPRVIYAMARDGLLFKWLAQINSKTKTPINATVVSGAIAALMAFLFDLKALVDLLSIG 393 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccHHHhccCCCCCCcHHHHHHHHHHHHHHHHHcCHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999999988888888999999999999
Q ss_pred HHHHHHHHHHHHhhheecCCCCC-CCc------c--c----------cch--hhhhhHHHHHHHHHhhhhcc-hhhccch
Q 008094 422 TLTGYSVVSACVIALRWKDRTSR-NDS------S--R----------LTS--AWRQGVICLIIIACCGFGAG-LFYRINA 479 (578)
Q Consensus 422 ~l~~y~~~~~~~~~~r~~~~~~~-~~~------~--~----------~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 479 (578)
.++.|.+.+++++++|++++... +|. . . ..+ .....++......+..+... .....++
T Consensus 394 ~ll~y~lv~~~~l~lR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (557)
T TIGR00906 394 TLLAYSLVAACVLILRYQPGLVYGQAKDTDEKDTLDSWVPFTSKSESQSEGFSLRTLFSGLILGLSILTTYGRAAIAEEA 473 (557)
T ss_pred HHHHHHHHHHHHHHhhccccccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHHHhhhhhccccc
Confidence 99999999999999998753210 000 0 0 000 00011111111111111111 0001122
Q ss_pred hHHHHHHHHHHHHHHHHHHHhccCCC-CCCCccccccchHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHhhhccc
Q 008094 480 SYILLIVAVVIAVLASAMLCLRHGYS-DPPGFSCPGVPLLPAVSIFFNLFLFAQLHYEAWWRFVILSFISIGLYAFYGQY 558 (578)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~~~~~ 558 (578)
+.....+...+...+....++++++. .++.||+|..|++|.++++.|++++..++..+|+.+++|+++|+++|+.|++|
T Consensus 474 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~p~~p~~p~~~i~~~~~l~~~l~~~~~~~~~~w~~~g~~~y~~yg~~ 553 (557)
T TIGR00906 474 WSIALLTLFLVLFLLVVLTIWRQPQNKQKVAFKVPLVPFLPALSILINIFLMVQLDADTWVRFAIWMAIGFLIYFLYGIR 553 (557)
T ss_pred hhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 33333333334444444455555444 38899999999999999999999999999999999999999999999999999
Q ss_pred ccCC
Q 008094 559 HADP 562 (578)
Q Consensus 559 ~~~~ 562 (578)
|+++
T Consensus 554 ~s~~ 557 (557)
T TIGR00906 554 HSLE 557 (557)
T ss_pred ccCC
Confidence 9874
|
|
| >PRK15049 L-asparagine permease; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-55 Score=467.13 Aligned_cols=420 Identities=20% Similarity=0.368 Sum_probs=340.7
Q ss_pred CCCcccccChhHHHHHHhhhhhhhhHHHHHHHHHhhhCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccchhhhhHHH
Q 008094 54 GEGLLRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGPGVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTA 133 (578)
Q Consensus 54 ~~~l~r~l~~~~~~~~~i~~~ig~g~~~~~~~~~~~~G~~~~~~~ii~~l~~~~~a~~~ael~~~~P~~~GG~y~~~~~~ 133 (578)
++++||+++.+|+.++++|.+||+|+|..++..+..+||..+++|++++++.++.+.+++||++++|+ +||.|+|+++.
T Consensus 23 ~~~l~r~L~~~~~~~i~~G~~IGsGiF~~~g~~~~~aGp~~il~~li~~i~~~~v~~slaELas~~P~-aGg~y~y~~~~ 101 (499)
T PRK15049 23 EEGYHKAMGNRQVQMIAIGGAIGTGLFLGAGARLQMAGPALALVYLICGLFSFFILRALGELVLHRPS-SGSFVSYAREF 101 (499)
T ss_pred chhhhccCCHhHhHHHhhhccccchHHHhhHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CCCHHHHHHHH
Confidence 34599999999999999999999999999999999999988899999999999999999999999999 99999999999
Q ss_pred hchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCccccCCCccccccchhhhHHHHHHHHHHHHHHH
Q 008094 134 FNELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLC 213 (578)
Q Consensus 134 ~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 213 (578)
+||..||.+||.+|++|....+......+.+...+ +.+ .+.+.| +++.+++++++.+|+
T Consensus 102 ~G~~~gf~~GW~~~l~~~~~~~~~~~a~~~~~~~~----~~~-~~~~~~----------------~~~~~~~~l~~~iN~ 160 (499)
T PRK15049 102 LGEKAAYVAGWMYFINWAMTGIVDITAVALYMHYW----GAF-GGVPQW----------------VFALAALTIVGTMNM 160 (499)
T ss_pred hCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----ccC-CCCcHH----------------HHHHHHHHHHHHHHH
Confidence 99999999999999998776655555555554322 111 112222 367777888999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhhhcc---ccc-----CCC------CCCCCCChHHHHHHHHHHHhhccchHHHh
Q 008094 214 WGVGESSVLNSCMTVVKVIIVIVVIFAGAFE---VDV-----SNW------SPFAPNGFKEILTGATVVFFAYVGFDAVA 279 (578)
Q Consensus 214 ~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~---~~~-----~~~------~~~~~~g~~~~~~~~~~~~~~~~G~e~~~ 279 (578)
+|+|..++++.+++.++++.++++++.+... .+. .++ .++.|+|+.+++.++..++|+|.|+|.++
T Consensus 161 ~gvk~~~~i~~~~~~iki~~l~~~ii~~i~~~~~~~~~~~~~~~f~~~~~~~~~~p~g~~~~~~~~~~~~faf~G~e~i~ 240 (499)
T PRK15049 161 IGVKWFAEMEFWFALIKVLAIVTFLVVGTVFLGSGQPLDGNTTGFHLITDNGGFFPHGLLPALVLIQGVVFAFASIEMVG 240 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcccccccCCCCcccccHHHHHHHHHHHHHHHhhHHHHH
Confidence 9999999999999999988777766554321 110 011 13446677777778888999999999999
Q ss_pred hhhhhhcCCCCChhHHHHHHHHHHHHHHHHHHHHHhccccccccC-CCChHHHHHHHcChhHHHHHHHHHHHHHHHHHHH
Q 008094 280 NSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLD-EDAPLSDAFASRGLKYVSVLISFGAVAGLTTTLL 358 (578)
Q Consensus 280 ~~~~E~k~P~k~ip~a~~~s~~~~~i~y~~~~~~~~~~~~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (578)
+++||+|||+|++|||++.++..+.++|++..+......|++++. .++|+.+++++.+.++...++.+..+++.+++.+
T Consensus 241 ~~aeE~knP~r~iPrAi~~~~~~i~~~yi~~~~~~~~~~p~~~~~~~~sP~~~~~~~~g~~~~~~ii~~~ilia~~ss~n 320 (499)
T PRK15049 241 TAAGECKDPQTMVPKAINSVIWRIGLFYVGSVVLLVMLLPWSAYQAGQSPFVTFFSKLGVPYIGSIMNIVVLTAALSSLN 320 (499)
T ss_pred HHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHheecchhccCcCCCHHHHHHHHcCchhHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999988775 4579999999999998889999999999999999
Q ss_pred HHHHHHHHHHHHHhhcCCCchhhhhhcCCCCcchhHHHHHHHHHHHHHhh---c---CHHHHHHHHHHHHHHHHHHHHHH
Q 008094 359 VGLYVQSRLYLGLGRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGILAGL---F---NVRVLSHILSVGTLTGYSVVSAC 432 (578)
Q Consensus 359 ~~~~~~sR~l~~~a~d~~lP~~~~~~~~r~~~P~~ail~~~~i~~i~~~~---~---~~~~l~~~~~~~~l~~y~~~~~~ 432 (578)
+.++++||++|+|||||.+|++|+|+| |+++|++|++++.++..+..++ . .++.+.++.+++.++.|.+++++
T Consensus 321 s~~~~~sR~l~a~Ardg~lP~~f~kv~-k~~~P~~Ail~~~~i~~l~~~l~~~~~~~~f~~l~~~~~~~~li~y~~~~~~ 399 (499)
T PRK15049 321 SGLYCTGRILRSMAMGGSAPSFMAKMS-RQHVPYAGILATLVVYVVGVFLNYLVPSRVFEIVLNFASLGIIASWAFIIVC 399 (499)
T ss_pred HHHHHHHHHHHHHHhcCCcCHHHHHhC-CCCCCHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999 8899999999888875443222 1 25778899999999999999999
Q ss_pred HhhheecCCCCCCCccccchhhhhhHHHHHHHHHhhhhcchhhccchhHHHHHHHHHHHHHHHHHHHhccCCCCCCCccc
Q 008094 433 VIALRWKDRTSRNDSSRLTSAWRQGVICLIIIACCGFGAGLFYRINASYILLIVAVVIAVLASAMLCLRHGYSDPPGFSC 512 (578)
Q Consensus 433 ~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 512 (578)
.+++|++.++..+ .+++||+
T Consensus 400 ~l~~R~~~~~~~~------------------------------------------------------------~~~pf~~ 419 (499)
T PRK15049 400 QMRLRKAIKEGKA------------------------------------------------------------ADVSFKL 419 (499)
T ss_pred HHHHHHhhhhcCC------------------------------------------------------------CCCCCcc
Confidence 9999866433211 1567999
Q ss_pred cccchHHHHHHHHHHHHhhcC--C---HH-HHHHHHHHHHHHHHHHhhhc
Q 008094 513 PGVPLLPAVSIFFNLFLFAQL--H---YE-AWWRFVILSFISIGLYAFYG 556 (578)
Q Consensus 513 p~~p~~~~~~~~~~~~~~~~~--~---~~-~~~~~~~~~~~g~~~y~~~~ 556 (578)
|.+|+.+.++++.+++.+..+ + .. +.....++.++..+.|+..+
T Consensus 420 ~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (499)
T PRK15049 420 PGAPFTSWLTLLFLLSVLVLMAFDYPNGTYTIAALPIIGILLVIGWFGVR 469 (499)
T ss_pred cCccHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999888776653321 1 11 23344445555566665533
|
|
| >PRK11387 S-methylmethionine transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-55 Score=462.97 Aligned_cols=425 Identities=21% Similarity=0.362 Sum_probs=346.1
Q ss_pred CCCcccccChhHHHHHHhhhhhhhhHHHHHHHHHhhhCc-HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccchhhhhHH
Q 008094 54 GEGLLRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGP-GVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYT 132 (578)
Q Consensus 54 ~~~l~r~l~~~~~~~~~i~~~ig~g~~~~~~~~~~~~G~-~~~~~~ii~~l~~~~~a~~~ael~~~~P~~~GG~y~~~~~ 132 (578)
++++||+++.+++.++++|.+||+|+|..++..++.+|| +.+++|++++++.++.+++++||++++|+ +||.|.|+++
T Consensus 9 ~~~l~r~L~~~~~~~l~ig~~IG~Gif~~~g~~~~~~G~~~~~l~~~i~~~~~~~~~~~~aELas~~P~-aGG~y~y~~~ 87 (471)
T PRK11387 9 AGQFKRTMKVRHLVMLSLGGVIGTGLFFNTGYIISTTGAAGTLLAYLIGALVVYLVMQCLGELSVAMPE-TGAFHVYAAR 87 (471)
T ss_pred chhhhhcCcHHHHHHHHHHhhhhhHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCCHHHHHHH
Confidence 346899999999999999999999999999999999998 68999999999999999999999999999 9999999999
Q ss_pred HhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCccccCCCccccccchhhhHHHHHHHHHHHHHH
Q 008094 133 AFNELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVL 212 (578)
Q Consensus 133 ~~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 212 (578)
.+||..||.+||.+|++|....+......+.++..+ .| +.+.| ....++.++++.+|
T Consensus 88 ~~g~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~---~p----~~~~~----------------~~~~~~~~~~~~in 144 (471)
T PRK11387 88 YLGPATGYTVAWLYWLTWTVALGSSLTAAGFCMQYW---FP----QVPVW----------------PWCLLFCALIFGLN 144 (471)
T ss_pred hcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---cC----cCcHH----------------HHHHHHHHHHHHHH
Confidence 999999999999999999888777666655554332 12 11222 24445566788999
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHhhhhccc------c-------cCCC--CCCCCCChHHHHHHHHHHHhhccchHH
Q 008094 213 CWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEV------D-------VSNW--SPFAPNGFKEILTGATVVFFAYVGFDA 277 (578)
Q Consensus 213 ~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~------~-------~~~~--~~~~~~g~~~~~~~~~~~~~~~~G~e~ 277 (578)
++|+|..++++.+.+.++++.++++++.+.... + .+++ +++.|++..++..++..++|+|.|+|.
T Consensus 145 ~~gvk~~~~~~~~~~~~ki~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~faf~G~e~ 224 (471)
T PRK11387 145 VVSTRFFAEGEFWFSLIKVVTILAFIVLGGAAIFGFIPMQDGSPAPGLRNLTAEGWFPHGGLPILMTMVAVNFAFSGTEL 224 (471)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCcccccCCCCCCcccHHHHHHHHHHHHHHHcCHHH
Confidence 999999999999999999888776666543210 0 0111 122355666788888899999999999
Q ss_pred HhhhhhhhcCCCCChhHHHHHHHHHHHHHHHHHHHHHhccccccccC-CCChHHHHHHHcChhHHHHHHHHHHHHHHHHH
Q 008094 278 VANSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLD-EDAPLSDAFASRGLKYVSVLISFGAVAGLTTT 356 (578)
Q Consensus 278 ~~~~~~E~k~P~k~ip~a~~~s~~~~~i~y~~~~~~~~~~~~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (578)
+++++||+|||+||+|||++.+..++.++|++..+++....|.++.. +++|+.+++++.++++...++.+..+++.+++
T Consensus 225 ~~~~a~E~knP~r~iPrAi~~~~~~~~~~y~~~~~~~~~~~p~~~~~~~~~p~~~~~~~~g~~~~~~ii~~~~~~s~~~~ 304 (471)
T PRK11387 225 IGIAAGETENPAKVIPVAIRTTIARLVIFFVGTVLVLAALIPMQQAGVEKSPFVLVFEKVGIPYAADIFNFVILTAILSA 304 (471)
T ss_pred HHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHheecCccccCccCChHHHHHHHcCCchHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999987665 46799999999999999899999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcCCCchhhhhhcCCCCcchhHHHHHHHHHHHHHhh--cC----HHHHHHHHHHHHHHHHHHHH
Q 008094 357 LLVGLYVQSRLYLGLGRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGILAGL--FN----VRVLSHILSVGTLTGYSVVS 430 (578)
Q Consensus 357 ~~~~~~~~sR~l~~~a~d~~lP~~~~~~~~r~~~P~~ail~~~~i~~i~~~~--~~----~~~l~~~~~~~~l~~y~~~~ 430 (578)
.++.+++.||++|+|||||.+|++|+|+| |+++|++|+++..++..+..+. .+ ++.+.++.+...++.|++.+
T Consensus 305 ~~~~~~~~sR~l~a~ardg~lP~~f~~~~-~~~~P~~Ail~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~li~y~~~~ 383 (471)
T PRK11387 305 ANSGLYASGRMLWSLSNEGTLPACFARLT-KRGIPLTALSVSMLGGLLALFSSVVAPDTVFVALSAISGFAVVAVWLSIC 383 (471)
T ss_pred HHHHHHHhhHHHHHHHhcCCcCHHHHHhC-CCCCcHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999 6799999998876654433221 11 24577788888889999999
Q ss_pred HHHhhheecCCCCCCCccccchhhhhhHHHHHHHHHhhhhcchhhccchhHHHHHHHHHHHHHHHHHHHhccCCCCCCCc
Q 008094 431 ACVIALRWKDRTSRNDSSRLTSAWRQGVICLIIIACCGFGAGLFYRINASYILLIVAVVIAVLASAMLCLRHGYSDPPGF 510 (578)
Q Consensus 431 ~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 510 (578)
++.+++|+++++..++. .+++|
T Consensus 384 ~~~i~lr~~~~~~~~~~----------------------------------------------------------~~~~~ 405 (471)
T PRK11387 384 ASHFMFRRRHLRDGKAL----------------------------------------------------------SELAY 405 (471)
T ss_pred HHHHHHHHHHHhcCCCC----------------------------------------------------------CCCCc
Confidence 99999998876543321 15679
Q ss_pred cccccchHHHHHHHHHHHHhhcC--CHH---HHHHHHHHHHHHHHHHhhhcccccC
Q 008094 511 SCPGVPLLPAVSIFFNLFLFAQL--HYE---AWWRFVILSFISIGLYAFYGQYHAD 561 (578)
Q Consensus 511 ~~p~~p~~~~~~~~~~~~~~~~~--~~~---~~~~~~~~~~~g~~~y~~~~~~~~~ 561 (578)
|.|.+|++|.++++.+++++... ++. ......+++++++..|.++++++++
T Consensus 406 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (471)
T PRK11387 406 RAPWYPLTPILGFVLCLLACVGLAFDPSQRIALWCGIPFVALCYGAYYLTQRLKRN 461 (471)
T ss_pred cCCCccHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 99999999999999888766533 222 2445666777888888876555433
|
|
| >PRK10746 putative transport protein YifK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-53 Score=447.28 Aligned_cols=425 Identities=20% Similarity=0.307 Sum_probs=353.4
Q ss_pred CCCCcccccChhHHHHHHhhhhhhhhHHHHHHHHHhhhCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccchhhhhHH
Q 008094 53 DGEGLLRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGPGVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYT 132 (578)
Q Consensus 53 ~~~~l~r~l~~~~~~~~~i~~~ig~g~~~~~~~~~~~~G~~~~~~~ii~~l~~~~~a~~~ael~~~~P~~~GG~y~~~~~ 132 (578)
.++++||+++.+|+.++++|.+||+|+|..++..++.+||+.+++|++++++.++.+++++||++++|+ +||.|+|++|
T Consensus 4 ~~~~l~r~L~~~~~~~i~ig~~IGtGlf~~~g~~l~~aGp~~~l~~~i~g~~~~~v~~~~aEl~~~~P~-sGg~~~y~~~ 82 (461)
T PRK10746 4 NKPELQRGLEARHIELIALGGTIGVGLFMGAASTLKWAGPSVLLAYIIAGLFVFFIMRSMGEMLFLEPV-TGSFAVYAHR 82 (461)
T ss_pred CchHHhccCcHHHHHHHHHHhhhhhhHHHHhHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCCHHHHHHH
Confidence 345689999999999999999999999999999999999999999999999999999999999999999 9999999999
Q ss_pred HhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCccccCCCccccccchhhhHHHHHHHHHHHHHH
Q 008094 133 AFNELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVL 212 (578)
Q Consensus 133 ~~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 212 (578)
.+||..||.+||.+|++|....+....+.+.|+..++ | +.+.| ....+++++++.+|
T Consensus 83 ~~g~~~Gf~~gw~~~~~~~~~~~~~~~a~~~~l~~~~---p----~~~~~----------------~~~~~~~~~~~~lN 139 (461)
T PRK10746 83 YMSPFFGYLTAWSYWFMWMAVGISEITAIGVYVQFWF---P----EMAQW----------------IPALIAVALVALAN 139 (461)
T ss_pred HhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---C----CCchH----------------HHHHHHHHHHHHHH
Confidence 9999999999999999998888888777777876542 2 12222 35566777888899
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHhhhhcc-----------cccCCCC---CCCCCChHHHHHHHHHHHhhccchHHH
Q 008094 213 CWGVGESSVLNSCMTVVKVIIVIVVIFAGAFE-----------VDVSNWS---PFAPNGFKEILTGATVVFFAYVGFDAV 278 (578)
Q Consensus 213 ~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-----------~~~~~~~---~~~~~g~~~~~~~~~~~~~~~~G~e~~ 278 (578)
++|+|..++++.+.+.+|++.++++++.++.. .+.+++. ++.|+|+.++..++..++|+|.|+|.+
T Consensus 140 ~~gv~~~~~~e~~~~~~ki~~i~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~g~~~~~~~~~faf~G~e~v 219 (461)
T PRK10746 140 LAAVRLYGEIEFWFAMIKVTTIIVMIVIGLGVIFFGFGNGGQSIGFSNLTEHGGFFAGGWKGFLTALCIVVASYQGVELI 219 (461)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCccccccCCCCcCcccHHHHHHHHHHHHHHhcCHHHH
Confidence 99999999999999999987776665544311 0123332 234667888999999999999999999
Q ss_pred hhhhhhhcCCCCChhHHHHHHHHHHHHHHHHHHHHHhccccccccC-CCChHHHHHHHcChhHHHHHHHHHHHHHHHHHH
Q 008094 279 ANSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLD-EDAPLSDAFASRGLKYVSVLISFGAVAGLTTTL 357 (578)
Q Consensus 279 ~~~~~E~k~P~k~ip~a~~~s~~~~~i~y~~~~~~~~~~~~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (578)
++.+||+|||||++|||+..+...+.++|++..+......|+++.. +++|+.+++++.+.+....++.+..+.+.+++.
T Consensus 220 ~~~a~E~knP~k~iP~Ai~~~~~~i~~~yv~~~~~~~~~~p~~~~~~~~sp~v~~~~~~g~~~~~~i~~~~il~a~~s~~ 299 (461)
T PRK10746 220 GITAGEAKNPQVTLRSAVGKVLWRILIFYVGAIFVIVTIFPWNEIGSNGSPFVLTFAKIGITAAAGIINFVVLTAALSGC 299 (461)
T ss_pred HHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHeeeeCCCCCCCCCCcHHHHHHHhCchhHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999998876 456999999999888888888888999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCchhhhhhcCCCCcchhHHHHHHHHHHHHH---hhc-----CHHHHHHHHHHHHHHHHHHH
Q 008094 358 LVGLYVQSRLYLGLGRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGILA---GLF-----NVRVLSHILSVGTLTGYSVV 429 (578)
Q Consensus 358 ~~~~~~~sR~l~~~a~d~~lP~~~~~~~~r~~~P~~ail~~~~i~~i~~---~~~-----~~~~l~~~~~~~~l~~y~~~ 429 (578)
++.+++.||++++|||||.+|++|+|+| |+++|++|++++.+...+.. ... .++.+.++.+++.++.|.+.
T Consensus 300 n~~~~~~sR~l~~~a~~g~lP~~~~~~~-~~g~P~~al~~~~~~~~l~~~~~~~~~~~~~~f~~l~~~~~~~~~i~w~~i 378 (461)
T PRK10746 300 NSGMYSCGRMLYALAKNRQLPAAMAKVS-RHGVPVAGVAVSILILLVGSCLNYIIPNPQRVFVYVYSASVLPGMVPWFVI 378 (461)
T ss_pred HHHHHHHHHHHHHHHhCCCcCHHHHHhC-CCCCcHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999 88999999987754432211 111 14668888888889999999
Q ss_pred HHHHhhheecCCCCCCCccccchhhhhhHHHHHHHHHhhhhcchhhccchhHHHHHHHHHHHHHHHHHHHhccCCCCCCC
Q 008094 430 SACVIALRWKDRTSRNDSSRLTSAWRQGVICLIIIACCGFGAGLFYRINASYILLIVAVVIAVLASAMLCLRHGYSDPPG 509 (578)
Q Consensus 430 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 509 (578)
+++.+++|+++++.. ++++
T Consensus 379 ~~~~i~~r~~~~~~~-------------------------------------------------------------~~~~ 397 (461)
T PRK10746 379 LISQLRFRRAHKAAI-------------------------------------------------------------ASHP 397 (461)
T ss_pred HHHHHHHHHhccccc-------------------------------------------------------------cCCC
Confidence 999999998876421 1556
Q ss_pred ccccccchHHHHHHHHHHHHhhcC--C---HHHHHHHHHHHHHHHHHHhhhcccccCCC
Q 008094 510 FSCPGVPLLPAVSIFFNLFLFAQL--H---YEAWWRFVILSFISIGLYAFYGQYHADPS 563 (578)
Q Consensus 510 ~~~p~~p~~~~~~~~~~~~~~~~~--~---~~~~~~~~~~~~~g~~~y~~~~~~~~~~~ 563 (578)
||.|.+|+.+.++++.++..+..+ + ..+.....+++++..+.|+.|++.+|.+-
T Consensus 398 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~ 456 (461)
T PRK10746 398 FRSILFPWANYLTMAFLICVLIGMYFNEDTRMSLFVGIIFLLAVTLIYKVFGLNRHGKA 456 (461)
T ss_pred CcCCCccHHHHHHHHHHHHHHHHHHHCccHHHHHHHHHHHHHHHHHHHHHHHhhhhcch
Confidence 999999999998888877764432 2 23556666777888888888877765553
|
|
| >PRK11357 frlA putative fructoselysine transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-53 Score=448.41 Aligned_cols=422 Identities=25% Similarity=0.391 Sum_probs=346.5
Q ss_pred CCCcccccChhHHHHHHhhhhhhhhHHHHHHHHHhhhC-cH-HHHHHHHHHHHHHHHHHHHHHHhhcCCCCccchhhhhH
Q 008094 54 GEGLLRRLGLFELVLIGVGASVGAGIFVVTGTVARDAG-PG-VTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAY 131 (578)
Q Consensus 54 ~~~l~r~l~~~~~~~~~i~~~ig~g~~~~~~~~~~~~G-~~-~~~~~ii~~l~~~~~a~~~ael~~~~P~~~GG~y~~~~ 131 (578)
++++||+++.+++++++++.++|+|+|..++.....+| |. .+++|++++++.++.+++++|+++++|+ +||.|.|++
T Consensus 3 ~~~L~r~l~~~~~~~l~vg~~ig~Gif~~~g~~~~~~G~~~~~~l~~li~~v~~l~~al~~aEl~s~~P~-~GG~y~y~~ 81 (445)
T PRK11357 3 SQELQRKLGFWAVLAIAVGTTVGSGIFVSVGEVAKAAGTPWLTVLAFVIGGLIVIPQMCVYAELSTAYPE-NGADYVYLK 81 (445)
T ss_pred cccccccccHHHHHHHHHHhheechhccchHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-CCCceeeHH
Confidence 45799999999999999999999999999998777655 43 8899999999999999999999999999 999999999
Q ss_pred HHhchhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCccccCCCccccccchhhhHHHHHHHHHHHH
Q 008094 132 TAFNELTAFLVFAQLM-LDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTI 210 (578)
Q Consensus 132 ~~~g~~~g~~~g~~~~-l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (578)
+.+||..||..||..+ ..+....+..+...++|+..+. |. + ......++.+++.+++.
T Consensus 82 ~~~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~---~~-----~-------------~~~~~~~~~~~~~~~~~ 140 (445)
T PRK11357 82 NAGSRPLAFLSGWASFWANDAPSLSIMALAIVSNLGFLT---PI-----D-------------PLLGKFIAAGLIIAFML 140 (445)
T ss_pred HhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CC-----c-------------hHHHHHHHHHHHHHHHH
Confidence 9999999999999755 4455566677777777765432 20 0 01123466677777889
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCCCCCC-----CCCC-hHHHHHHHHHHHhhccchHHHhhhhhh
Q 008094 211 VLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEVDVSNWSPF-----APNG-FKEILTGATVVFFAYVGFDAVANSAEE 284 (578)
Q Consensus 211 i~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-----~~~g-~~~~~~~~~~~~~~~~G~e~~~~~~~E 284 (578)
+|++|+|..+++|++++++++++++++++.+....+..++.+. ...+ +.++..++..++|+|.|+|.+++++||
T Consensus 141 ln~~gv~~~~~v~~~~~~~~~~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~af~G~e~~~~~a~E 220 (445)
T PRK11357 141 LHLRSVEGGAAFQTLITIAKIIPFTIVIGLGIFWFKAENFAAPTTTAIGATGSFMALLAGISATSWSYTGMASICYMTGE 220 (445)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCCcccccccchHHHHHHHHHHHHHHHhhHHHHHhhHHH
Confidence 9999999999999999999998887777766543333333211 1112 557788889999999999999999999
Q ss_pred hcCCCCChhHHHHHHHHHHHHHHHHHHHHHhccccccccC-CCChHHHHHHHc--ChhHHHHHHHHHHHHHHHHHHHHHH
Q 008094 285 SKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLD-EDAPLSDAFASR--GLKYVSVLISFGAVAGLTTTLLVGL 361 (578)
Q Consensus 285 ~k~P~k~ip~a~~~s~~~~~i~y~~~~~~~~~~~~~~~~~-~~~p~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (578)
+||||||+|||+..++.+++++|++.........|.+++. ++.|+.++++.. .++....++.+..+++.+++.++.+
T Consensus 221 ~k~P~r~iP~Ai~~~~~i~~~~Y~l~~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 300 (445)
T PRK11357 221 IKNPGKTMPRALIGSCLLVLVLYTLLALVISGLMPFDKLANSETPISDALTWIPALGSTAGIFVAITAMIVILGSLSSCV 300 (445)
T ss_pred hcCccccchHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhcCCchHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998888888764 456888888764 3445556667777888899999999
Q ss_pred HHHHHHHHHHhhcCCCchhhhhhcCCCCcchhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHhhheecCC
Q 008094 362 YVQSRLYLGLGRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGILAGLFNVRVLSHILSVGTLTGYSVVSACVIALRWKDR 441 (578)
Q Consensus 362 ~~~sR~l~~~a~d~~lP~~~~~~~~r~~~P~~ail~~~~i~~i~~~~~~~~~l~~~~~~~~l~~y~~~~~~~~~~r~~~~ 441 (578)
.+.+|++|+|||||.+|++|+|+|||+++|++|++++.+++.++....+++.+.+..+....+.|.+...+.+++|+++
T Consensus 301 ~~~sR~~~a~ardg~lp~~~~~v~~~~~tP~~a~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~i~lr~~~- 379 (445)
T PRK11357 301 MYQPRLEYAMAKDNLFFKCFGHVHPKYNTPDVSIILQGALGIFFIFVSDLTSLLGYFTLVMCFKNTLTFGSIIWCRKRD- 379 (445)
T ss_pred HhhhhHHHHHHhcCCchHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHheeecCC-
Confidence 9999999999999999999999999999999999999999888777788888888888888889998888888777543
Q ss_pred CCCCCccccchhhhhhHHHHHHHHHhhhhcchhhccchhHHHHHHHHHHHHHHHHHHHhccCCCCCCCccccccchHHHH
Q 008094 442 TSRNDSSRLTSAWRQGVICLIIIACCGFGAGLFYRINASYILLIVAVVIAVLASAMLCLRHGYSDPPGFSCPGVPLLPAV 521 (578)
Q Consensus 442 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~p~~~~~ 521 (578)
+. +++||.|..|++|.+
T Consensus 380 ~~---------------------------------------------------------------~~~~k~p~~~~~~~~ 396 (445)
T PRK11357 380 DY---------------------------------------------------------------KPLWRTPAFGLMTTL 396 (445)
T ss_pred CC---------------------------------------------------------------CCCcccCCchHHHHH
Confidence 22 445999999999999
Q ss_pred HHHHHHHHhh----cCCHHHHHHHHHHHHHHHHHHhhhcccccC
Q 008094 522 SIFFNLFLFA----QLHYEAWWRFVILSFISIGLYAFYGQYHAD 561 (578)
Q Consensus 522 ~~~~~~~~~~----~~~~~~~~~~~~~~~~g~~~y~~~~~~~~~ 561 (578)
+++.++++.. ..+..++....+++++|+.+|+++++|+++
T Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~~~~~~~~ 440 (445)
T PRK11357 397 AIASSLILVASTFVWAPIPGLICAVIVIATGLPAYAFWAKRSRQ 440 (445)
T ss_pred HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhhhHHhheechhhh
Confidence 9988887753 224445667788899999999977766554
|
|
| >TIGR00908 2A0305 ethanolamine permease | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-53 Score=446.95 Aligned_cols=420 Identities=25% Similarity=0.387 Sum_probs=348.9
Q ss_pred CCCcccccChhHHHHHHhhhhhhhhHHHHHHHHHhhhCc-HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccchhhhhHH
Q 008094 54 GEGLLRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGP-GVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYT 132 (578)
Q Consensus 54 ~~~l~r~l~~~~~~~~~i~~~ig~g~~~~~~~~~~~~G~-~~~~~~ii~~l~~~~~a~~~ael~~~~P~~~GG~y~~~~~ 132 (578)
++++||+++.+++.+++++.++| |.+...+..+..+|| +.++++++++++.++.+++++|+++++|+ +||.|.|+++
T Consensus 2 ~~~l~r~l~~~~~~~l~~~~~ig-g~~~~~~~~~~~~G~~~~~~~~~i~~~~~~~~a~~~aEl~s~~P~-~Gg~y~~~~~ 79 (442)
T TIGR00908 2 HRQLKKTLATWQLWGIGVGYVIS-GDYAGWNFGLAQGGWGGFVVATLLVATMYLTFCFSLAELSTMIPT-AGGGYGFARR 79 (442)
T ss_pred CchhhccCCHHHHHHhHHHHHhh-ccchhHhhHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCCHHHHHHH
Confidence 56799999999999999999997 777777777788999 58899999999999999999999999999 9999999999
Q ss_pred HhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCccccCCCccccccchhhhHHHHHHHHHHHHHH
Q 008094 133 AFNELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVL 212 (578)
Q Consensus 133 ~~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 212 (578)
.+||..||.+||.++++|....+..+..+++|+..+++. .+.| +.+.+++++++.+|
T Consensus 80 ~~G~~~gf~~gw~~~~~~~~~~~~~a~~~~~~l~~~~p~-------~~~~----------------~~~~~~~~~~~~ln 136 (442)
T TIGR00908 80 AFGPWGGFLAGTAILIEFAFAPPAIACFIGAYCESLFPV-------GPGW----------------LAALVFYIVFIGIN 136 (442)
T ss_pred HhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-------Cchh----------------HHHHHHHHHHHHHH
Confidence 999999999999999999999999999999998766421 1122 35667777888999
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCC--------CCCCCCCChHHHHHHHHHHHhhccchHHHhhhhhh
Q 008094 213 CWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEVDVSN--------WSPFAPNGFKEILTGATVVFFAYVGFDAVANSAEE 284 (578)
Q Consensus 213 ~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--------~~~~~~~g~~~~~~~~~~~~~~~~G~e~~~~~~~E 284 (578)
++|+|..++++.+.+.++++.++++......+.+..+ .+++.|.++.+++.++..++|+|.|+|.+++++||
T Consensus 137 ~~g~~~~~~i~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~aeE 216 (442)
T TIGR00908 137 ILGVGEAAKLEFVVTAVAIIALGVFIGAMVPHFDSANLFNGPQTGASSFLPGAYVGVFAAIPFAIWFFLAVEGVAMAAEE 216 (442)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHhccCCHHHhccCCccCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999888776655444332222111 12344566778888999999999999999999999
Q ss_pred hcCCCCChhHHHHHHHHHHHHHHHHHHHHHhccccccccC-CCChHHHHHHHcCh--hHHHHHHHHHHHHHHHHHHHHHH
Q 008094 285 SKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLD-EDAPLSDAFASRGL--KYVSVLISFGAVAGLTTTLLVGL 361 (578)
Q Consensus 285 ~k~P~k~ip~a~~~s~~~~~i~y~~~~~~~~~~~~~~~~~-~~~p~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 361 (578)
+|||+||+|||++.+..++.++|+..........+.+++. .++|+.+++++..+ .+...++.+..+++.+++.++.+
T Consensus 217 ~k~P~r~iprai~~s~~~~~~~~~~~~~~~~g~~~~~~l~~~~~p~~~~~~~~~g~~~~~~~~i~~~~~~~~~~s~~~~~ 296 (442)
T TIGR00908 217 TKNPKRDIPRGLIGAILTLLALAAGILVVGPGAADAKELMGSNNPLPEALESIYGGSTWMSQFVNLVGLFGLIASFHGII 296 (442)
T ss_pred hcCcccccCHHHHHHHHHHHHHHHHHHHHHhcCCCHHHhCCCcchHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998888777777776664 46789888887633 35556667777788889999999
Q ss_pred HHHHHHHHHHhhcCCCchhhhhhcCCCCcchhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHhhheecCC
Q 008094 362 YVQSRLYLGLGRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGILAGLFNVRVLSHILSVGTLTGYSVVSACVIALRWKDR 441 (578)
Q Consensus 362 ~~~sR~l~~~a~d~~lP~~~~~~~~r~~~P~~ail~~~~i~~i~~~~~~~~~l~~~~~~~~l~~y~~~~~~~~~~r~~~~ 441 (578)
++.+|++++|||||.+|++|+|+| |+++|++|++++.+++.++.+..+.+.+.++.+++.++.|.+.+++.+++|+++|
T Consensus 297 ~~~sR~l~a~ardg~lP~~~~~~~-~~~~P~~Ail~~~~i~~~~~l~~~~~~l~~~~~~~~~~~y~~~~~a~i~lr~~~p 375 (442)
T TIGR00908 297 YGYSRQIFALSRAGYLPESLSKVN-RKKAPVLAIVVPGVIGFGLSLTGQTALIILVSVFGAIISYVLSMAAHFTLRIRRP 375 (442)
T ss_pred HHHHHHHHHHHhcCCccHHHHHhC-CCCCcHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999999 9999999999999988777666677788888888999999999999999998876
Q ss_pred CCCCCccccchhhhhhHHHHHHHHHhhhhcchhhccchhHHHHHHHHHHHHHHHHHHHhccCCCCCCCccccccchHHHH
Q 008094 442 TSRNDSSRLTSAWRQGVICLIIIACCGFGAGLFYRINASYILLIVAVVIAVLASAMLCLRHGYSDPPGFSCPGVPLLPAV 521 (578)
Q Consensus 442 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~p~~~~~ 521 (578)
+. +|+||.|..|+.|.+
T Consensus 376 ~~---------------------------------------------------------------~rp~~~p~~~~~~~l 392 (442)
T TIGR00908 376 DM---------------------------------------------------------------ERPYRTPGGILTPGV 392 (442)
T ss_pred CC---------------------------------------------------------------CCCccCCCcchHHHH
Confidence 65 556999999999999
Q ss_pred HHHHHHHHhhc---CCHHHHHHHHHHHHHHHHHHhhhcccccCC
Q 008094 522 SIFFNLFLFAQ---LHYEAWWRFVILSFISIGLYAFYGQYHADP 562 (578)
Q Consensus 522 ~~~~~~~~~~~---~~~~~~~~~~~~~~~g~~~y~~~~~~~~~~ 562 (578)
+++.+++++.. .++..+....++.++..+.|+.|+++|.++
T Consensus 393 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 436 (442)
T TIGR00908 393 ALVLACVALVTGFYVDPRVVVGAVAIFVVLIGYYFLYSRHHLVS 436 (442)
T ss_pred HHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHhhhhchhhc
Confidence 99988776553 366556656777777777887776665554
|
The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily. |
| >TIGR00909 2A0306 amino acid transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-52 Score=443.09 Aligned_cols=428 Identities=36% Similarity=0.634 Sum_probs=374.5
Q ss_pred cccccChhHHHHHHhhhhhhhhHHHHHHHHHhhhCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccchhhhhHHHhch
Q 008094 57 LLRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGPGVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNE 136 (578)
Q Consensus 57 l~r~l~~~~~~~~~i~~~ig~g~~~~~~~~~~~~G~~~~~~~ii~~l~~~~~a~~~ael~~~~P~~~GG~y~~~~~~~g~ 136 (578)
++|+++.+|.+++.++.++|+|++..++.....+|+..+++|++++++.++.+++++|+++++|+ +||.|.|+++.+||
T Consensus 1 l~r~l~~~~~~~~~i~~~ig~gi~~~~~~~~~~~G~~~~l~~li~~~~~~~~a~~~~el~~~~p~-~Gg~y~~~~~~~G~ 79 (429)
T TIGR00909 1 LSRELGLFDLTMLGIGAMIGTGIFVVTGIAAGKAGPAVILSFVLAGLTALFIALVYAELAAMLPV-AGSPYTYAYEAMGE 79 (429)
T ss_pred CCccccHHHHHHHHHhhhhcchHHHhHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-CCcceeeHHHHhCc
Confidence 57999999999999999999999999999888889988999999999999999999999999999 99999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCccccCCCccccccchhhhHHHHHHHHHHHHHHHhhh
Q 008094 137 LTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGV 216 (578)
Q Consensus 137 ~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~ 216 (578)
..|+++||.+++++....+..+..+++++..++... +.+.+.+.... ........+..++++++++.+|++|+
T Consensus 80 ~~g~~~gw~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~~~~~~~----~~~~~~~~~~~i~~~~~~~~l~~~g~ 152 (429)
T TIGR00909 80 LTAFIIGWSLWLEYGVAVAAVAVGWGGYLQEFLPGV---GLDLPAVLTAK----PGNGGVFNLPALLIVLFLTYILYLGA 152 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---cccCchhhhcC----CcccccccHHHHHHHHHHHHHHHhCc
Confidence 999999999999999999999999999988776421 11112111000 00000112356778888999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhcccccCCCCCCCCCChHHHHHHHHHHHhhccchHHHhhhhhhhcCCCCChhHHH
Q 008094 217 GESSVLNSCMTVVKVIIVIVVIFAGAFEVDVSNWSPFAPNGFKEILTGATVVFFAYVGFDAVANSAEESKKPQRDLPIGI 296 (578)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~P~k~ip~a~ 296 (578)
|..+|++.+.+.++++.++++++.+..+.+..++.++.|.++.++..++...+|+|.|+|.+.+++||+|||+|++||++
T Consensus 153 ~~~~~~~~v~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~E~~~p~r~ip~ai 232 (429)
T TIGR00909 153 KESGKVNDILVVLKVAALLLFAALGAIHFASNNYTPFMPMGFGGVGAATALVFFAFIGFEAISTAAEEVKNPERDIPKAI 232 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHhhCcHHhcCCCCCCcHHHHHHHHHHHHHHHhhHHHHHhhHHhccCccccccHHH
Confidence 99999999999999998887777776666666777766778888899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhccccccccC-CCChHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 008094 297 LGSLLICAALYVGVSLVLTGMVPYKFLD-EDAPLSDAFASRGLKYVSVLISFGAVAGLTTTLLVGLYVQSRLYLGLGRDG 375 (578)
Q Consensus 297 ~~s~~~~~i~y~~~~~~~~~~~~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~ 375 (578)
+.+..++.++|++..+......|.+++. ++.|+.++.++.++++...++.+..+++.+++.++.+.+.+|+++++||||
T Consensus 233 ~~~~~~~~v~Yil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~~~~~a~dg 312 (429)
T TIGR00909 233 ILSLIVVTLLYVLVAAVILGAVPWRQLAGSTAPLSLVGYDLGQGIGGLILTAGAVFSIASVMLAGIYGTSRVLFAMSRDG 312 (429)
T ss_pred HHHHHHHHHHHHHHHHHHhcCcCHHHhCCCCcHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 9999999999999999999888887664 456888888888889988899999999999999999999999999999999
Q ss_pred CCchhhhhhcCCCCcchhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHhhheecCCCCCCCccccchhhh
Q 008094 376 LLPSIFAKVHPKRHTPVHSQVWVGIVAGILAGLFNVRVLSHILSVGTLTGYSVVSACVIALRWKDRTSRNDSSRLTSAWR 455 (578)
Q Consensus 376 ~lP~~~~~~~~r~~~P~~ail~~~~i~~i~~~~~~~~~l~~~~~~~~l~~y~~~~~~~~~~r~~~~~~~~~~~~~~~~~~ 455 (578)
.+|++|+|+|||+++|++|+++..+++.++....+++.+.++.+...++.|++.+++.+++|+|+|+.
T Consensus 313 ~lP~~~~~~~~~~~~P~~a~~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~a~~~lr~~~~~~------------ 380 (429)
T TIGR00909 313 LLPGSLSKVHPKTGTPHMSIIIFSLTAALLASLVPLEGLAELTSIGTLIAFAAVNVAVIILRRRRPDI------------ 380 (429)
T ss_pred CCcHHHHHcCCCCCCcHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC------------
Confidence 99999999999999999999999998887776778899999999999999999999999999887665
Q ss_pred hhHHHHHHHHHhhhhcchhhccchhHHHHHHHHHHHHHHHHHHHhccCCCCCCCccccccchHHHHHHHHHHHHhhcCCH
Q 008094 456 QGVICLIIIACCGFGAGLFYRINASYILLIVAVVIAVLASAMLCLRHGYSDPPGFSCPGVPLLPAVSIFFNLFLFAQLHY 535 (578)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~~~ 535 (578)
+|+||.|..|+++.+.+..+.++....++
T Consensus 381 ---------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (429)
T TIGR00909 381 ---------------------------------------------------QRAFRCPLVPVLPVLVVSYCIYLLLNLGP 409 (429)
T ss_pred ---------------------------------------------------CCCCCCCcchHHHHHHHHHHHHHHHHccH
Confidence 45588899999999888888888888899
Q ss_pred HHHHHHHHHHHHHHHHHhhh
Q 008094 536 EAWWRFVILSFISIGLYAFY 555 (578)
Q Consensus 536 ~~~~~~~~~~~~g~~~y~~~ 555 (578)
.++....+|.++|.++|.+|
T Consensus 410 ~~~~~~~~~~~~g~~~y~~~ 429 (429)
T TIGR00909 410 GTTVWFLVWMLLGSVFYFIY 429 (429)
T ss_pred HHHHHHHHHHHHHHHHHHcC
Confidence 99999999999999999754
|
|
| >PRK10249 phenylalanine transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-53 Score=447.13 Aligned_cols=364 Identities=20% Similarity=0.390 Sum_probs=311.5
Q ss_pred CCCCcccccChhHHHHHHhhhhhhhhHHHHHHHHHhhhCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccchhhhhHH
Q 008094 53 DGEGLLRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGPGVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYT 132 (578)
Q Consensus 53 ~~~~l~r~l~~~~~~~~~i~~~ig~g~~~~~~~~~~~~G~~~~~~~ii~~l~~~~~a~~~ael~~~~P~~~GG~y~~~~~ 132 (578)
+++++||+++.+|+.++++|.++|+|+|..++..++.+||..+++|++++++.++.+++++|+++++|+ +||.|.|+++
T Consensus 15 ~~~~l~r~l~~~~~~~i~ig~~IGsGif~~~g~~~~~aGp~~~l~~li~~~~~~~~~~~~aEl~~~~P~-~Gg~~~y~~~ 93 (458)
T PRK10249 15 QEPTLHRGLHNRHIQLIALGGAIGTGLFLGIGPAIQMAGPAVLLGYGVAGIIAFLIMRQLGEMVVEEPV-SGSFAHFAYK 93 (458)
T ss_pred CchhhhccCcHhHhhhhhhhcccchhHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CCCHHHHHHH
Confidence 334799999999999999999999999999999999999999999999999999999999999999999 9999999999
Q ss_pred HhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCccccCCCccccccchhhhHHHHHHHHHHHHHH
Q 008094 133 AFNELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVL 212 (578)
Q Consensus 133 ~~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 212 (578)
.+||..||.+||.+|+++....+......+.|+..+. | +.+.| .+..+++++.+.+|
T Consensus 94 ~~g~~~gf~~gw~~~~~~~~~~~~~~~a~~~~~~~~~---~----~~~~~----------------~~~~~~~~l~~~lN 150 (458)
T PRK10249 94 YWGPFAGFLSGWNYWVMFVLVGMAELTAAGIYMQYWF---P----DVPTW----------------IWAAAFFIIINAVN 150 (458)
T ss_pred HhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC---C----cCcHH----------------HHHHHHHHHHHHHH
Confidence 9999999999999999998877777776767765432 1 11222 35677788889999
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHhhhhcc---------cccCC-CC--CCCCCChHHHHHHHHHHHhhccchHHHhh
Q 008094 213 CWGVGESSVLNSCMTVVKVIIVIVVIFAGAFE---------VDVSN-WS--PFAPNGFKEILTGATVVFFAYVGFDAVAN 280 (578)
Q Consensus 213 ~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~---------~~~~~-~~--~~~~~g~~~~~~~~~~~~~~~~G~e~~~~ 280 (578)
++|+|..++++.+.+.+|++.++++++.++.. .+.++ ++ ++.|+|+.++..++...+|+|.|+|.+++
T Consensus 151 ~~gv~~~~~i~~~~~~ikv~~i~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~af~G~e~~~~ 230 (458)
T PRK10249 151 LVNVRLYGETEFWFALIKVLAIIGMIGFGLWLLFSGHGGEKASIDNLWRYGGFFATGWNGLILSLAVIMFSFGGLELIGI 230 (458)
T ss_pred HhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhccCCCCCCCCcHHHHHHHHHHHHHHHcCHHHHHH
Confidence 99999999999999999887666655543321 01111 11 23457888899999999999999999999
Q ss_pred hhhhhcCCCCChhHHHHHHHHHHHHHHHHHHHHHhccccccccC-CCChHHHHHHHcChhHHHHHHHHHHHHHHHHHHHH
Q 008094 281 SAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLD-EDAPLSDAFASRGLKYVSVLISFGAVAGLTTTLLV 359 (578)
Q Consensus 281 ~~~E~k~P~k~ip~a~~~s~~~~~i~y~~~~~~~~~~~~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (578)
++||+|||+|++|||++.+...+.++|++..+......|+++.. +++|+.+++++.++++...++.+..+++.+++.++
T Consensus 231 ~a~E~~~P~k~iPrai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 310 (458)
T PRK10249 231 TAAEARDPEKSIPKAVNQVVYRILLFYIGSLVVLLALYPWVEVKSNSSPFVMIFHNLDSNVVASALNFVILVASLSVYNS 310 (458)
T ss_pred HHHHhcCHhhHHHHHHHHHHHHHHHHHHHHHHHHheeccccccCccCCcHHHHHHHcCchhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998888887765 35799999999988888888888889999999999
Q ss_pred HHHHHHHHHHHHhhcCCCchhhhhhcCCCCcchhHHHHHHHHHHHHHhhc------CHHHHHHHHHHHHHHHHHHHHHHH
Q 008094 360 GLYVQSRLYLGLGRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGILAGLF------NVRVLSHILSVGTLTGYSVVSACV 433 (578)
Q Consensus 360 ~~~~~sR~l~~~a~d~~lP~~~~~~~~r~~~P~~ail~~~~i~~i~~~~~------~~~~l~~~~~~~~l~~y~~~~~~~ 433 (578)
.+++.||++|+|||||.+|++|+|+| |+++|++|++++.+++.+..++. .++.+.++.+...++.|.+++.+.
T Consensus 311 ~~~~~sR~l~a~ardg~lP~~~~kv~-~~~~P~~All~~~~i~~l~~l~~~~~~~~~f~~l~~~~~~~~~i~y~~~~~~~ 389 (458)
T PRK10249 311 GVYSNSRMLFGLSVQGNAPKFLTRVS-RRGVPINSLMLSGAITSLVVLINYLLPQKAFGLLMALVVATLLLNWIMICLAH 389 (458)
T ss_pred HHHHHHHHHHHHhcCCCcCHHHHHhC-CCCCCHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999 77999999999998877654432 246777888888999999999999
Q ss_pred hhheecCC
Q 008094 434 IALRWKDR 441 (578)
Q Consensus 434 ~~~r~~~~ 441 (578)
+++|++++
T Consensus 390 l~~r~~~~ 397 (458)
T PRK10249 390 LRFRAAMR 397 (458)
T ss_pred HHHHHHHH
Confidence 99886543
|
|
| >PRK10644 arginine:agmatin antiporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-52 Score=442.33 Aligned_cols=414 Identities=21% Similarity=0.337 Sum_probs=342.7
Q ss_pred CCCcccccChhHHHHHHhhhhhhhhHHHHHHHHHhhhCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccchhhhhHHH
Q 008094 54 GEGLLRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGPGVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTA 133 (578)
Q Consensus 54 ~~~l~r~l~~~~~~~~~i~~~ig~g~~~~~~~~~~~~G~~~~~~~ii~~l~~~~~a~~~ael~~~~P~~~GG~y~~~~~~ 133 (578)
+++++|+++.++++++++|.++|+|+|..++..... |+..+++|+++++..++.+++++||++++|+ +||.|+|+++.
T Consensus 3 ~~~~~~~lg~~~~~~l~vg~~iGsGif~~~~~~a~~-g~~~~~~~~i~~~~~l~~al~~aEL~s~~P~-aGG~y~~~~~~ 80 (445)
T PRK10644 3 SDADAHKVGLIPVTLMVAGNIMGSGVFLLPANLAST-GGIAIYGWLVTIIGALGLSMVYAKMSSLDPS-PGGSYAYARRC 80 (445)
T ss_pred CCccCCCcCHHHHHHHHHhhHhhhHHHhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC-CCChhHHHHHH
Confidence 345789999999999999999999999999987664 5567899999999999999999999999999 99999999999
Q ss_pred hchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCccccCCCccccccchhhhHHHHHHHHHHHHHHH
Q 008094 134 FNELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLC 213 (578)
Q Consensus 134 ~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 213 (578)
+||..||++||.+|+++.............|...++ |... + +....++.++++++++.+|+
T Consensus 81 ~g~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~---~-------------~~~~~~~~~~~~~~~~~ln~ 141 (445)
T PRK10644 81 FGPFLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFF---PILK---D-------------PLVLTITCVVVLWIFVLLNI 141 (445)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cccC---C-------------cHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999987776666656666665443 2110 0 11223466777788999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCCCCC-CCC---CChHHHHHHHHHHHhhccchHHHhhhhhhhcCCC
Q 008094 214 WGVGESSVLNSCMTVVKVIIVIVVIFAGAFEVDVSNWSP-FAP---NGFKEILTGATVVFFAYVGFDAVANSAEESKKPQ 289 (578)
Q Consensus 214 ~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~~~---~g~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~P~ 289 (578)
+|+|..+++|++.+.++++.++++.+.+....+.+++.+ +.+ .++.++..++...+|+|.|+|.+++++||+||||
T Consensus 142 ~gvk~~~~i~~i~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~aeE~k~P~ 221 (445)
T PRK10644 142 VGPKMITRVQAVATVLALIPIVGIAVFGWFWFRGETYMAAWNVSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVVKNPK 221 (445)
T ss_pred hchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhccCCccccccchHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCcc
Confidence 999999999999999998888777776654333322221 111 2455677788899999999999999999999999
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHhccccccccC-CCChHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008094 290 RDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLD-EDAPLSDAFASRGLKYVSVLISFGAVAGLTTTLLVGLYVQSRLY 368 (578)
Q Consensus 290 k~ip~a~~~s~~~~~i~y~~~~~~~~~~~~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l 368 (578)
|++|||++.+..++.++|++..++...+.|++++. ++.|+.+++++..+++...++.+..+++.+++.++.+...+|++
T Consensus 222 r~iPrai~~s~~i~~v~Y~l~~~~~~~~~~~~~l~~~~~p~~~~~~~~~g~~~~~~v~~~~~~s~~~~~~~~~~~~sr~~ 301 (445)
T PRK10644 222 RNVPIATIGGVLIAAVCYVLSSTAIMGMIPNAALRVSASPFGDAARMALGDTAGAIVSFCAAAGCLGSLGGWTLLAGQTA 301 (445)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHhcCCChHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999887764 46799998888877777777888888899999999999999999
Q ss_pred HHHhhcCCCchhhhhhcCCCCcchhHHHHHHHHHHHHHhhc-------CHHHHHHHHHHHHHHHHHHHHHHHhhheecCC
Q 008094 369 LGLGRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGILAGLF-------NVRVLSHILSVGTLTGYSVVSACVIALRWKDR 441 (578)
Q Consensus 369 ~~~a~d~~lP~~~~~~~~r~~~P~~ail~~~~i~~i~~~~~-------~~~~l~~~~~~~~l~~y~~~~~~~~~~r~~~~ 441 (578)
++|||||.+|++|+|+| |+++|++|++++.+++.++.+.. .++.+.++.+++.++.|.+++++.+++|+|++
T Consensus 302 ~a~ardg~lP~~~~~v~-~~~tP~~Ai~~~~~i~~l~~l~~~~~~~~~~~~~l~~~~~~~~li~y~~~~~~~~~l~~~~~ 380 (445)
T PRK10644 302 KAAADDGLFPPIFARVN-KAGTPVAGLLIVGVLMTIFQLSSISPNASKEFGLVSSVSVIFTLVPYLYTCAALLLLGHGHF 380 (445)
T ss_pred HHHHhCCCccHHHHhhC-cCCCCHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 99999999999999999 57999999999999877655431 26678888888899999999999999887754
Q ss_pred CCCCCccccchhhhhhHHHHHHHHHhhhhcchhhccchhHHHHHHHHHHHHHHHHHHHhccCCCCCCCccccccchHHHH
Q 008094 442 TSRNDSSRLTSAWRQGVICLIIIACCGFGAGLFYRINASYILLIVAVVIAVLASAMLCLRHGYSDPPGFSCPGVPLLPAV 521 (578)
Q Consensus 442 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~p~~~~~ 521 (578)
+ ++.|..|++|.+
T Consensus 381 ~-------------------------------------------------------------------~~~p~~~~~~~~ 393 (445)
T PRK10644 381 G-------------------------------------------------------------------KARPAYLAVTLI 393 (445)
T ss_pred c-------------------------------------------------------------------ccccchhHHHHH
Confidence 2 222456789999
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHhhhc
Q 008094 522 SIFFNLFLFAQLHYEAWWRFVILSFISIGLYAFYG 556 (578)
Q Consensus 522 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~~~ 556 (578)
+++.|++++...+.++.....++++++..+|++.+
T Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~ 428 (445)
T PRK10644 394 AFVYCIWAVVGSGAKEVMWSFVTLMVITAFYALNY 428 (445)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999887787777777788888888886443
|
|
| >COG0833 LysP Amino acid transporters [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-53 Score=428.11 Aligned_cols=423 Identities=21% Similarity=0.345 Sum_probs=362.3
Q ss_pred CcccccChhHHHHHHhhhhhhhhHHHHHHHHHhhhCc-HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccchhhhhHHHh
Q 008094 56 GLLRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGP-GVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAF 134 (578)
Q Consensus 56 ~l~r~l~~~~~~~~~i~~~ig~g~~~~~~~~~~~~G~-~~~~~~ii~~l~~~~~a~~~ael~~~~P~~~GG~y~~~~~~~ 134 (578)
++||+|+.+|+.++++|..||+|+|...|..+.++|| +.++++++.+++.++++.+.+||+..+|. +|+...|++|..
T Consensus 41 ~lkR~LK~RHl~MIAiGG~IGTGLfvgsG~~l~~aGP~g~li~y~i~G~~vy~vm~sLGEma~~~P~-sGsF~~ya~rfv 119 (541)
T COG0833 41 ELKRSLKSRHLQMIAIGGAIGTGLFVGSGKALSQAGPAGLLIAYLIIGIMVYFVMQSLGELAVFYPV-SGSFSTYATRFV 119 (541)
T ss_pred hhhhhhhHHHHHHHHhccccccceeeecchhhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-CCchhhhhhhhc
Confidence 6999999999999999999999999999999999999 69999999999999999999999999998 999999999999
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCccccCCCccccccchhhhHHHHHHHHHHHHHHHh
Q 008094 135 NELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCW 214 (578)
Q Consensus 135 g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 214 (578)
+|.+||..||.||+.|....+....+.+..++.+.. +..+.| ++..++++++..+|..
T Consensus 120 dpa~GFa~gWnYw~~w~v~~~~El~aa~~vi~yW~p------~~v~~~----------------~w~~iF~~~i~~iN~~ 177 (541)
T COG0833 120 DPAFGFALGWNYWLNWAVTLPLELTAASLVIQYWFP------DTVPPW----------------IWIAIFLVLIFLLNLF 177 (541)
T ss_pred CchHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhcC------CCCChH----------------HHHHHHHHHHHHHHHh
Confidence 999999999999999999999999998888877642 112333 4788899999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhhccc----------ccCCCC--CCCCCChHHHHHHHHHHHhhccchHHHhhhh
Q 008094 215 GVGESSVLNSCMTVVKVIIVIVVIFAGAFEV----------DVSNWS--PFAPNGFKEILTGATVVFFAYVGFDAVANSA 282 (578)
Q Consensus 215 g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~----------~~~~~~--~~~~~g~~~~~~~~~~~~~~~~G~e~~~~~~ 282 (578)
++|..+..+.++..+|++.++.+++.++... ....|+ ...++|+.++...+..+.|+|.|.|.+...+
T Consensus 178 ~Vk~fGE~Efw~s~iKV~~ii~Fii~gii~~~Gg~~~~~~ig~~yw~~pg~F~~gf~g~~~v~v~a~Fsf~GtElvgiaA 257 (541)
T COG0833 178 GVKGFGETEFWFSSIKVLTIIGFIILGIIIICGGGPTHGYIGFNYWHDPGAFAGGFKGFCSVFVIAAFSFSGTELVGLAA 257 (541)
T ss_pred cccccceehHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcceeeecCCCCCCcchHHHHHHHhhheeeeeceeeeeeee
Confidence 9999999999999999999888887765421 112232 2347789999999999999999999999999
Q ss_pred hhhcCCCCChhHHHHHHHHHHHHHHHHHHHHHhccccccccC---------CCChHHHHHHHcChhHHHHHHHHHHHHHH
Q 008094 283 EESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLD---------EDAPLSDAFASRGLKYVSVLISFGAVAGL 353 (578)
Q Consensus 283 ~E~k~P~k~ip~a~~~s~~~~~i~y~~~~~~~~~~~~~~~~~---------~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (578)
+|.|||+|++|||+......+.++|++..+.+...+|+++-+ ..+|+..++++.|.+.+..+++..++.+.
T Consensus 258 gEs~nP~K~iPkAik~vfwRIl~FYi~si~~ig~lvPy~dp~Ll~~~~~~~~~SPFvia~~~~Gi~~~~~imNaVIL~sv 337 (541)
T COG0833 258 GESENPRKSIPKAIKQVFWRILLFYILSIFVIGLLVPYNDPRLLGNSSSGVAASPFVIAIKNAGIPVAASIMNAVILTSV 337 (541)
T ss_pred cccCCchhhhHHHHHHHHHHHHHHHHHHHHHheEEccCCCcccccCCcCCccCCChhHhHHhcCCccchHHHHHHHHHHH
Confidence 999999999999999999999999999999999999987521 34699999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCchhhhhhcCCCCcchhHHHHHHHHHHHHHhhc------CHHHHHHHHHHHHHHHHH
Q 008094 354 TTTLLVGLYVQSRLYLGLGRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGILAGLF------NVRVLSHILSVGTLTGYS 427 (578)
Q Consensus 354 ~~~~~~~~~~~sR~l~~~a~d~~lP~~~~~~~~r~~~P~~ail~~~~i~~i~~~~~------~~~~l~~~~~~~~l~~y~ 427 (578)
+++.|+.++++||++|+||+||..||+|+|+| |+|+|.+|++.+.+++.+-.+-. .++++.+++++..++.|+
T Consensus 338 lSa~NS~lYasSR~L~sLA~~g~APk~f~~~~-r~GvP~~al~vt~~fg~lafl~~~~~~~~vf~wL~~isg~s~~i~W~ 416 (541)
T COG0833 338 LSAANSGLYASSRMLYSLAKQGKAPKIFAKVD-RRGVPLVALLVTLLFGLLAFLNSSFKETTVFNWLLNISGLSGFIAWG 416 (541)
T ss_pred HHHhhccchHHHHHHHHHHhcCCCchHHHhhC-CCCCchHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999 88999999998888866543322 257899999999999999
Q ss_pred HHHHHHhhheecCCCCCCCccccchhhhhhHHHHHHHHHhhhhcchhhccchhHHHHHHHHHHHHHHHHHHHhccCCCCC
Q 008094 428 VVSACVIALRWKDRTSRNDSSRLTSAWRQGVICLIIIACCGFGAGLFYRINASYILLIVAVVIAVLASAMLCLRHGYSDP 507 (578)
Q Consensus 428 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 507 (578)
..+++.+++|+..+...+. .++
T Consensus 417 ~I~~shirFR~A~~~QG~s----------------------------------------------------------~~~ 438 (541)
T COG0833 417 SICLSHIRFRRAMKAQGRS----------------------------------------------------------LDE 438 (541)
T ss_pred HHHHHHHHHHHHHHHcCCC----------------------------------------------------------hhh
Confidence 9999999999775543332 237
Q ss_pred CCccccccchHHHHHHHHHHHHhhcCCH----------HHHHHHHHHHHHHHHHHhhhccccc
Q 008094 508 PGFSCPGVPLLPAVSIFFNLFLFAQLHY----------EAWWRFVILSFISIGLYAFYGQYHA 560 (578)
Q Consensus 508 ~~~~~p~~p~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~g~~~y~~~~~~~~ 560 (578)
.+||.|.+|+.|+++++.|..++...++ ..+...-+-+-+.+++|..|+.++|
T Consensus 439 L~yks~~~p~g~~~~~~~~~li~i~q~y~af~p~~~~~~~F~~~Yl~~pi~i~~y~~yk~~~k 501 (541)
T COG0833 439 LPYKSPFGPYGPIYGLILCILILIGQGYVAFFPIGFSAGDFFAAYLGLPIFIAIYIGYKLYKK 501 (541)
T ss_pred cCccCCCccHHHHHHHHHHHHHHHHcchheeecCCccHHHHHHHHHHHHHHHHHHHHheeEec
Confidence 8899999999999999999998776422 2233333334455556666655544
|
|
| >PRK10655 potE putrescine transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-52 Score=442.01 Aligned_cols=420 Identities=20% Similarity=0.309 Sum_probs=347.5
Q ss_pred cccccChhHHHHHHhhhhhhhhHHHHHHHHHhhhCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccchhhhhHHHhch
Q 008094 57 LLRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGPGVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNE 136 (578)
Q Consensus 57 l~r~l~~~~~~~~~i~~~ig~g~~~~~~~~~~~~G~~~~~~~ii~~l~~~~~a~~~ael~~~~P~~~GG~y~~~~~~~g~ 136 (578)
+||+++.+++++++++.++|+|+|..++... .+|+..+++|++++++.++.+++|+|+++++|+ +||.|.|+++.+||
T Consensus 4 ~~~~l~~~~~~~l~vg~~iGsGif~~p~~~~-~~G~~~~~~w~i~~~~~~~~a~~~aeL~~~~P~-~GG~y~y~~~~~G~ 81 (438)
T PRK10655 4 KSNKMGVVQLTILTAVNMMGSGIIMLPTKLA-QVGTISILSWLVTAVGSMALAYAFAKCGMFSRK-SGGMGGYAEYAFGK 81 (438)
T ss_pred ccCcccHHHHHHHHHHhhhhhHHHHhHHHHH-HhhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCC-CCchHHHHHHHcCc
Confidence 5788999999999999999999999988754 578888999999999999999999999999999 99999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCccccCCCccccccchhhhHHHHHHHHHHHHHHHhhh
Q 008094 137 LTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGV 216 (578)
Q Consensus 137 ~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~ 216 (578)
..||++||.+|+++.......+.....|+..++ |. +. +.....++.++++++.+.+|++|+
T Consensus 82 ~~gf~~gw~~~~~~~~~~~~~a~~~~~y~~~~~---~~---~~-------------~~~~~~~~~~~~l~~~~~ln~~g~ 142 (438)
T PRK10655 82 SGNFMANYTYGVSLLIANVAIAISAVGYGTELF---GA---TL-------------SPVQICLATIGVLWLCTVANFGGA 142 (438)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---cc---cc-------------chHHHHHHHHHHHHHHHHHHHhCH
Confidence 999999999999998877666666777776543 21 00 111233466677788999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhcccccCCCC-CCCCCC---hHHHHHHHHHHHhhccchHHHhhhhhhhcCCCCCh
Q 008094 217 GESSVLNSCMTVVKVIIVIVVIFAGAFEVDVSNWS-PFAPNG---FKEILTGATVVFFAYVGFDAVANSAEESKKPQRDL 292 (578)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~g---~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~P~k~i 292 (578)
|..+++|++.+..+++.++++.+.+....+.+++. ++.|++ +.++..++..++|+|.|+|.+++++||+|||+||+
T Consensus 143 ~~~~~i~~i~~~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~r~i 222 (438)
T PRK10655 143 RITGQISSVTVWGVIIPVVGLSIIGWFWFSPSLYVAAWNPHHLPFFSAVGSSIAMTLWAFLGLESACANSDAVENPERNV 222 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccCCcCccCCchHHHHHHHHHHHHHHHhhhhhhhhhHHHhhCccccc
Confidence 99999999999988888777777665544444442 233333 35677788889999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhccccccccC-CCChHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008094 293 PIGILGSLLICAALYVGVSLVLTGMVPYKFLD-EDAPLSDAFASRGLKYVSVLISFGAVAGLTTTLLVGLYVQSRLYLGL 371 (578)
Q Consensus 293 p~a~~~s~~~~~i~y~~~~~~~~~~~~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~ 371 (578)
|||++.+..+++++|++.........|++++. +++|..+++++..+++...++.+..+++.+++.++.+.+.+|++++|
T Consensus 223 PrAi~~~~~~~~~~Y~l~~~~~~~~~~~~~l~~~~~p~~~~~~~~~g~~~~~~~~~~~~is~~~~~~~~~~~~sR~~~~~ 302 (438)
T PRK10655 223 PIAVLGGTLGAAVIYIVSTNVIAGIVPNMELANSTAPFGLAFAQMFNPTVGKIVMALMVMSCCGSLLGWQFTIAQVFKSS 302 (438)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHhhccchHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999888888887764 46788888888877877778888888899999999999999999999
Q ss_pred hhcCCCchhhhhhcCCCCcchhHHHHHHHHHHHHHhhc-------CHHHHHHHHHHHHHHHHHHHHHHHhhheecCCCCC
Q 008094 372 GRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGILAGLF-------NVRVLSHILSVGTLTGYSVVSACVIALRWKDRTSR 444 (578)
Q Consensus 372 a~d~~lP~~~~~~~~r~~~P~~ail~~~~i~~i~~~~~-------~~~~l~~~~~~~~l~~y~~~~~~~~~~r~~~~~~~ 444 (578)
+|||.+|++|+|+| |+++|++|++++.+++.++.+.. +++.+.++.++..++.|.+.+++.+++|+|+++.
T Consensus 303 a~dg~lP~~~~~v~-~~~tP~~all~~~~i~~~l~l~~~~~~~~~~~~~l~~~~~~~~~i~y~~~~~~~~~lr~~~~~~- 380 (438)
T PRK10655 303 ADEGYFPKIFSRVT-KVDAPVQGMLIIVVIQSLLSLMTISPSLNSQFNVLVNLAVVTNIIPYILSMAALVIIQKVANVP- 380 (438)
T ss_pred hcCCchhHHHHhhC-cCCCCHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC-
Confidence 99999999999999 67999999999988776554432 3567888888899999999999999999887654
Q ss_pred CCccccchhhhhhHHHHHHHHHhhhhcchhhccchhHHHHHHHHHHHHHHHHHHHhccCCCCCCCccccccchHHHHHHH
Q 008094 445 NDSSRLTSAWRQGVICLIIIACCGFGAGLFYRINASYILLIVAVVIAVLASAMLCLRHGYSDPPGFSCPGVPLLPAVSIF 524 (578)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~p~~~~~~~~ 524 (578)
+|+||.| +++|.++.+
T Consensus 381 --------------------------------------------------------------~~~~~~~--~~~~~~~~~ 396 (438)
T PRK10655 381 --------------------------------------------------------------PSKAKVA--NFIAFVGAL 396 (438)
T ss_pred --------------------------------------------------------------cchhHHH--HHHHHHHHH
Confidence 2335554 477888888
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHHHHHHHhhhcccccCCC
Q 008094 525 FNLFLFAQLHYEAWWRFVILSFISIGLYAFYGQYHADPS 563 (578)
Q Consensus 525 ~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~~~~~~~~~~ 563 (578)
.+++.+...+.++.....+++++|+++|.++.+|+.+++
T Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~~~~~~~~~~ 435 (438)
T PRK10655 397 YSFYALYSSGEEAMLYGSIVTFLGWTLYGLISPRFELKN 435 (438)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 877776666666677778899999999987766655543
|
|
| >PRK10836 lysine transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-52 Score=445.89 Aligned_cols=399 Identities=22% Similarity=0.339 Sum_probs=323.3
Q ss_pred CCCCcccccChhHHHHHHhhhhhhhhHHHHHHHHHhhhCcH-HHHHHHHHHHHHHHHHHHHHHHhhcCCCCccchhhhhH
Q 008094 53 DGEGLLRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGPG-VTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAY 131 (578)
Q Consensus 53 ~~~~l~r~l~~~~~~~~~i~~~ig~g~~~~~~~~~~~~G~~-~~~~~ii~~l~~~~~a~~~ael~~~~P~~~GG~y~~~~ 131 (578)
+++++||+++.+|+.++++|.+||+|+|..++.+++.+||. .+++|+++++++++.+++|+||++++|+ +||.|.|++
T Consensus 9 ~~~~l~r~L~~~~~~~l~vG~~IGsGif~~~g~~~~~aGp~~~l~a~~i~g~~~~~~al~~aEL~s~~P~-sGg~y~y~~ 87 (489)
T PRK10836 9 EAPGLRRELKARHLTMIAIGGSIGTGLFVASGATISQAGPGGALLSYMLIGLMVYFLMTSLGELAAYMPV-SGSFATYGQ 87 (489)
T ss_pred CcccccccCcHHHHHHHHHhhhhhhhhhHhhhHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CCCHHHHHH
Confidence 45679999999999999999999999999999999999995 8999999999999999999999999999 999999999
Q ss_pred HHhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCccccCCCccccccchhhhHHHHHHHHHHHHH
Q 008094 132 TAFNELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIV 211 (578)
Q Consensus 132 ~~~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 211 (578)
+.+||..||.+||.+|+.+....+........++..+ .| +.+.| ....+++++++.+
T Consensus 88 ~~~g~~~gf~~Gw~~~~~~~~~~a~~~~a~~~~~~~~---~~----~~~~~----------------~~~~~~~~~~~~l 144 (489)
T PRK10836 88 NYVEEGFGFALGWNYWYNWAVTIAVDLVAAQLVMSWW---FP----DTPGW----------------IWSALFLGVIFLL 144 (489)
T ss_pred HHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc---CC----CCchH----------------HHHHHHHHHHHHH
Confidence 9999999999999999987766554333333333221 11 11111 2455667778899
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHhhhhcc------c----ccCCCCC---CCCCChHHHHHHHHHHHhhccchHHH
Q 008094 212 LCWGVGESSVLNSCMTVVKVIIVIVVIFAGAFE------V----DVSNWSP---FAPNGFKEILTGATVVFFAYVGFDAV 278 (578)
Q Consensus 212 ~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~------~----~~~~~~~---~~~~g~~~~~~~~~~~~~~~~G~e~~ 278 (578)
|++|+|..+++|.+++..|+..++.+++.++.. . +.+++.+ ..++++.++..+....+|+|.|+|.+
T Consensus 145 N~~gv~~~~~~~~~~~~~ki~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~faf~G~e~~ 224 (489)
T PRK10836 145 NYISVRGFGEAEYWFSLIKVTTVIVFIIVGVLMIIGIFKGAEPAGWSNWTIGDAPFAGGFAAMIGVAMIVGFSFQGTELI 224 (489)
T ss_pred HHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCccccCCCCCCCCcccHHHHHHHHHHHHHHHccHHHH
Confidence 999999999999999999987766655443321 1 1123321 12346666666666778999999999
Q ss_pred hhhhhhhcCCCCChhHHHHHHHHHHHHHHHHHHHHHhccccccccC---------CCChHHHHHHHcChhHHHHHHHHHH
Q 008094 279 ANSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLD---------EDAPLSDAFASRGLKYVSVLISFGA 349 (578)
Q Consensus 279 ~~~~~E~k~P~k~ip~a~~~s~~~~~i~y~~~~~~~~~~~~~~~~~---------~~~p~~~~~~~~~~~~~~~~~~~~~ 349 (578)
++++||+||||||+|||++.++..+.++|++.........|.++.+ ..+|+.+++.+.+.+....++.+..
T Consensus 225 ~~~a~E~knP~r~iPrAi~~~~~~v~~~Yvl~~~~~~~~vp~~~~~~~~~~~~~~~~sp~~~~~~~~g~~~~~~ii~~~i 304 (489)
T PRK10836 225 GIAAGESEDPAKNIPRAVRQVFWRILLFYVFAILIISLIIPYTDPSLLRNDVKDISVSPFTLVFQHAGLLSAAAVMNAVI 304 (489)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHheecCCCChhhhccccccccCCcHHHHHHHcCChhHHHHHHHHH
Confidence 9999999999999999999999999999999999998888865321 1368888899888888888889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhhhhcCCCCcchhHHHHHHHHHHHHHhhcC------HHHHHHHHHHHHH
Q 008094 350 VAGLTTTLLVGLYVQSRLYLGLGRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGILAGLFN------VRVLSHILSVGTL 423 (578)
Q Consensus 350 ~~~~~~~~~~~~~~~sR~l~~~a~d~~lP~~~~~~~~r~~~P~~ail~~~~i~~i~~~~~~------~~~l~~~~~~~~l 423 (578)
+++.+++.++.+++.||++|+|||||.+|++|+|+| |+++|++|++++.+++.+..+... ++.+.++.+++.+
T Consensus 305 l~a~~~~~n~~~~~~sR~l~a~Ardg~lP~~~~kv~-~~~~P~~All~~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~~ 383 (489)
T PRK10836 305 LTAVLSAGNSGMYASTRMLYTLACDGKAPRIFAKLS-RGGVPRNALYATTVIAGLCFLTSMFGNQTVYLWLLNTSGMTGF 383 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCcCHHHHhhC-CCCCcHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999 679999999999988776554321 3457788888889
Q ss_pred HHHHHHHHHHhhheecCCCCCCCccccchhhhhhHHHHHHHHHhhhhcchhhccchhHHHHHHHHHHHHHHHHHHHhccC
Q 008094 424 TGYSVVSACVIALRWKDRTSRNDSSRLTSAWRQGVICLIIIACCGFGAGLFYRINASYILLIVAVVIAVLASAMLCLRHG 503 (578)
Q Consensus 424 ~~y~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 (578)
+.|++.+++.+++||+.+++.++.
T Consensus 384 ~~y~~~~~a~l~~R~~~~~~~~~~-------------------------------------------------------- 407 (489)
T PRK10836 384 IAWLGIAISHYRFRRGYVLQGHDL-------------------------------------------------------- 407 (489)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCc--------------------------------------------------------
Confidence 999999999999887632221110
Q ss_pred CCCCCCccccccchHHHHHHHHHHHHhhcCC
Q 008094 504 YSDPPGFSCPGVPLLPAVSIFFNLFLFAQLH 534 (578)
Q Consensus 504 ~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~~ 534 (578)
++++||.|.+|+.|.++++.|++++....
T Consensus 408 --~~~p~~~p~~p~~~~~~~~~~~~~~~~~~ 436 (489)
T PRK10836 408 --NDLPYRSGFFPLGPIFAFVLCLIITLGQN 436 (489)
T ss_pred --CCCCCcCCCccHHHHHHHHHHHHHHHHHH
Confidence 13679999999999999999998877543
|
|
| >PRK10238 aromatic amino acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-52 Score=440.10 Aligned_cols=366 Identities=22% Similarity=0.433 Sum_probs=313.8
Q ss_pred CCCCcccccChhHHHHHHhhhhhhhhHHHHHHHHHhhhCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccchhhhhHH
Q 008094 53 DGEGLLRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGPGVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYT 132 (578)
Q Consensus 53 ~~~~l~r~l~~~~~~~~~i~~~ig~g~~~~~~~~~~~~G~~~~~~~ii~~l~~~~~a~~~ael~~~~P~~~GG~y~~~~~ 132 (578)
.++++||+++.+|+.+++++.+||+|+|..++..++.+||..+++|++++++.++.+++++|+++++|. +||.|+|+++
T Consensus 6 ~~~~l~r~L~~~~~~~i~ig~~IGsGif~~~g~~~~~~Gp~~i~~~~i~gi~~~~v~~s~aEl~s~~P~-aGg~y~~~~~ 84 (456)
T PRK10238 6 HGEQLKRGLKNRHIQLIALGGAIGTGLFLGSASVIQSAGPGIILGYAIAGFIAFLIMRQLGEMVVEEPV-AGSFSHFAYK 84 (456)
T ss_pred cchhhhccCcHHHHHHHHhhccccchHHHhhHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCCHHHHHHH
Confidence 445799999999999999999999999999999999999998999999999999999999999999999 9999999999
Q ss_pred HhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCccccCCCccccccchhhhHHHHHHHHHHHHHH
Q 008094 133 AFNELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVL 212 (578)
Q Consensus 133 ~~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 212 (578)
.+||..||.+||.++++|....++.....++++..+. | +.+.| ....+++++...+|
T Consensus 85 ~~g~~~gf~~Gw~~~~~~~~~~~~~~~~~~~~~~~~~---p----~~~~~----------------~~~~i~~~~~~~lN 141 (456)
T PRK10238 85 YWGSFAGFASGWNYWVLYVLVAMAELTAVGKYIQFWY---P----EIPTW----------------VSAAVFFVVINAIN 141 (456)
T ss_pred HcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---C----cCcHH----------------HHHHHHHHHHHHHH
Confidence 9999999999999999999998888888888876542 2 22223 35666777889999
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHhhhhc---cc------ccCC-C--CCCCCCChHHHHHHHHHHHhhccchHHHhh
Q 008094 213 CWGVGESSVLNSCMTVVKVIIVIVVIFAGAF---EV------DVSN-W--SPFAPNGFKEILTGATVVFFAYVGFDAVAN 280 (578)
Q Consensus 213 ~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~---~~------~~~~-~--~~~~~~g~~~~~~~~~~~~~~~~G~e~~~~ 280 (578)
++|+|..++++.+.+.+++..++++++.++. .. ...+ + .++.|+|+.++..++..+.|+|.|+|.+++
T Consensus 142 ~~gv~~~~~~~~~~~~iki~~i~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~af~G~e~~~~ 221 (456)
T PRK10238 142 LTNVKVFGEMEFWFAIIKVIAVVAMIIFGGWLLFSGNGGPQATVSNLWDQGGFLPHGFTGLVMMMAIIMFSFGGLELVGI 221 (456)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCccccccCCCCCCccccHHHHHHHHHHHHHHhcCHHHHHH
Confidence 9999999999999999998877665543321 10 0111 1 124466777888888889999999999999
Q ss_pred hhhhhcCCCCChhHHHHHHHHHHHHHHHHHHHHHhccccccccC-CCChHHHHHHHcChhHHHHHHHHHHHHHHHHHHHH
Q 008094 281 SAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLD-EDAPLSDAFASRGLKYVSVLISFGAVAGLTTTLLV 359 (578)
Q Consensus 281 ~~~E~k~P~k~ip~a~~~s~~~~~i~y~~~~~~~~~~~~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (578)
++||+|||+|++|||+..+...+.+.|+..........|++++. +++|+.+++++.+.+....++.+..+.+.+++.++
T Consensus 222 ~aeE~knP~r~iPrAi~~~~~~i~~~y~~~~~~~~~~~p~~~l~~~~sP~~~~~~~~g~~~~~~i~~~~i~~~~~s~~~~ 301 (456)
T PRK10238 222 TAAEADNPEQSIPKATNQVIYRILIFYIGSLAVLLSLMPWTRVTADTSPFVLIFHELGDTFVANALNIVVLTAALSVYNS 301 (456)
T ss_pred HHHhhcChhhHHHHHHHHHHHHHHHHHHHHHHHHheecChhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999888887778888765 45799999999988888888888899999999999
Q ss_pred HHHHHHHHHHHHhhcCCCchhhhhhcCCCCcchhHHHHHHHHHHHHHhhc------CHHHHHHHHHHHHHHHHHHHHHHH
Q 008094 360 GLYVQSRLYLGLGRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGILAGLF------NVRVLSHILSVGTLTGYSVVSACV 433 (578)
Q Consensus 360 ~~~~~sR~l~~~a~d~~lP~~~~~~~~r~~~P~~ail~~~~i~~i~~~~~------~~~~l~~~~~~~~l~~y~~~~~~~ 433 (578)
.+++.||++|+|||||.+|++|+|+| |+++|++|++++.+++.+..++. .++.+.++.+.+.++.|.++.++.
T Consensus 302 ~~~~~sR~l~a~ardg~lP~~f~kv~-~~~~P~~Ail~~~~i~~l~~l~~~~~~~~~f~~l~~~~~~~~~i~y~~~~~~~ 380 (456)
T PRK10238 302 CVYCNSRMLFGLAQQGNAPKALASVD-KRGVPVNTILVSALVTALCVLINYLAPESAFGLLMALVVSALVINWAMISLAH 380 (456)
T ss_pred HHHHHHHHHHHHHhCCCccHHHHhhC-cCCCcHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999 67999999999999876654431 246778888888899999999999
Q ss_pred hhheecCCCC
Q 008094 434 IALRWKDRTS 443 (578)
Q Consensus 434 ~~~r~~~~~~ 443 (578)
+++||++++.
T Consensus 381 l~~r~~~~~~ 390 (456)
T PRK10238 381 MKFRRAKQEQ 390 (456)
T ss_pred HHHHHHHHhc
Confidence 9999876654
|
|
| >TIGR01773 GABAperm gamma-aminobutyrate permease | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-52 Score=439.68 Aligned_cols=368 Identities=23% Similarity=0.365 Sum_probs=311.7
Q ss_pred CCCCcccccChhHHHHHHhhhhhhhhHHHHHHHHHhhhCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccchhhhhHH
Q 008094 53 DGEGLLRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGPGVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYT 132 (578)
Q Consensus 53 ~~~~l~r~l~~~~~~~~~i~~~ig~g~~~~~~~~~~~~G~~~~~~~ii~~l~~~~~a~~~ael~~~~P~~~GG~y~~~~~ 132 (578)
.+.++||+|+.+|+.+++++.+||+|+|..++..++.+||..+++|++++++.++.+++++||++++|+ +||.|.|+++
T Consensus 6 ~~~~~~~~L~~~~~~~i~ig~~IGsGif~~~g~~~~~~G~~~~i~~~i~~v~~~~~a~~~aEl~s~~P~-~Gg~~~~~~~ 84 (452)
T TIGR01773 6 SGLKLPNGLKTRHVTMLSIAGVIGAGLFVGSGSAIASAGPAALLAYLLAGLLVVFIMRMLGEMAVANPD-TGSFSTYADD 84 (452)
T ss_pred chHhHhCcCcHHHHHHHHHhhhhhchHHHhhHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCCHHHHHHH
Confidence 355689999999999999999999999999999999999988899999999999999999999999999 9999999999
Q ss_pred HhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCccccCCCccccccchhhhHHHHHHHHHHHHHH
Q 008094 133 AFNELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVL 212 (578)
Q Consensus 133 ~~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 212 (578)
.+||..||.+||.+|++|....++.+...+.++..++ | +.+.| +++.+++++...+|
T Consensus 85 ~~g~~~gf~~gw~~~~~~~~~~~~~~~~~~~~l~~~~---~----~~~~~----------------~~~~~~~~~~~~~n 141 (452)
T TIGR01773 85 AIGRWAGFTIGWLYWWFWVLVIPLEAIAAAGILQYWF---P----DIPLW----------------LFSLILTIVLTLTN 141 (452)
T ss_pred HhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---C----cCcHH----------------HHHHHHHHHHHHHH
Confidence 9999999999999999999998888888888877543 2 12222 46777888889999
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHhhhhcc---c----cc---CCC---CCCCCCChHHHHHHHHHHHhhccchHHHh
Q 008094 213 CWGVGESSVLNSCMTVVKVIIVIVVIFAGAFE---V----DV---SNW---SPFAPNGFKEILTGATVVFFAYVGFDAVA 279 (578)
Q Consensus 213 ~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~---~----~~---~~~---~~~~~~g~~~~~~~~~~~~~~~~G~e~~~ 279 (578)
++|+|..++++.+.+.++++.++++++.+... . +. +++ .++.|+|+.++..++..++|+|.|+|.++
T Consensus 142 ~~gv~~~~~~~~~~~~~ki~~l~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~~~~af~G~e~~~ 221 (452)
T TIGR01773 142 LYSVKSYGEFEFWFALIKVIAIIAFIILGAVAIFGFAPGSEVSGFSNLTGKGGFFPNGIGAVLLAILVTMFSFMGTEIVT 221 (452)
T ss_pred HHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCccccccCCCCcCcccHHHHHHHHHHHHHHhccHHHHh
Confidence 99999999999999999988776665544321 0 11 111 12346677789999999999999999999
Q ss_pred hhhhhhcCCCCChhHHHHHHHHHHHHHHHHHHHHHhccccccccC--CCChHHHHHHHcChhHHHHHHHHHHHHHHHHHH
Q 008094 280 NSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLD--EDAPLSDAFASRGLKYVSVLISFGAVAGLTTTL 357 (578)
Q Consensus 280 ~~~~E~k~P~k~ip~a~~~s~~~~~i~y~~~~~~~~~~~~~~~~~--~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (578)
+++||+|||+||+|||+..+...+.++|++.........|+++.+ ++.|+.++.+..+++....++.+..+++.+++.
T Consensus 222 ~~a~E~k~P~r~iPrAi~~~~~~~~~~y~l~~~~~~~~~p~~~~~~~~~~p~~~~~~~~g~~~~~~ii~~~~~~~~~~~~ 301 (452)
T TIGR01773 222 IAAAESSNPIKSITRATNSVIWRIIVFYLGSIFIVVALLPWNSPNLLEVGSYVAVLELLGIPHAKLIMDFVVLTAVLSCL 301 (452)
T ss_pred HHHHhhcChhhHHHHHHHHHHHHHHHHHHHHHHHHeeEeCCCCcccccCCcHHHHHHHcCChhHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999988888777766433 334888888888888888888888899999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCchhhhhhcCCCCcchhHHHHHHHHHHHHHhhc--C----HHHHHHHHHHHHHHHHHHHHH
Q 008094 358 LVGLYVQSRLYLGLGRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGILAGLF--N----VRVLSHILSVGTLTGYSVVSA 431 (578)
Q Consensus 358 ~~~~~~~sR~l~~~a~d~~lP~~~~~~~~r~~~P~~ail~~~~i~~i~~~~~--~----~~~l~~~~~~~~l~~y~~~~~ 431 (578)
++.+++.||++++|||||.+|++|+|+| |+++|++|++++.+++.+..+.. + ++.+.++.+...++.|.+..+
T Consensus 302 ~~~~~~~sR~~~a~ardg~lP~~~~~v~-~~~~P~~Ail~~~~~~~~~~l~~~~~~~~~f~~l~~~~~~~~~~~y~~~~~ 380 (452)
T TIGR01773 302 NSALYTTSRMLYSLAERGDAPRVFMKLN-KKGVPVQAVLASTFFSFLTVVVNYFAPDKVFLFLVNSSGAIALLVYLVIAV 380 (452)
T ss_pred HHHHHHHHHHHHHHHhCCCcCHHHHhhC-CCCCcHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999 78999999999888876654432 2 345666777778899999999
Q ss_pred HHhhheecCCCCCC
Q 008094 432 CVIALRWKDRTSRN 445 (578)
Q Consensus 432 ~~~~~r~~~~~~~~ 445 (578)
+.+++|+++++.+|
T Consensus 381 ~~i~~r~~~~~~~~ 394 (452)
T TIGR01773 381 SQLRMRKKLKANGE 394 (452)
T ss_pred HHHHHHHHHHhcCC
Confidence 99998887665433
|
GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity. |
| >PRK10580 proY putative proline-specific permease; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-51 Score=436.53 Aligned_cols=419 Identities=20% Similarity=0.348 Sum_probs=343.4
Q ss_pred CCCCcccccChhHHHHHHhhhhhhhhHHHHHHHHHhhhCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccchhhhhHH
Q 008094 53 DGEGLLRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGPGVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYT 132 (578)
Q Consensus 53 ~~~~l~r~l~~~~~~~~~i~~~ig~g~~~~~~~~~~~~G~~~~~~~ii~~l~~~~~a~~~ael~~~~P~~~GG~y~~~~~ 132 (578)
+++++||+++.+|+.++++|.++|+|+|..++...+.+||..+++|++++++.++.+++++|+++++|+ +||.|.|+++
T Consensus 3 ~~~~l~r~L~~~~~~~i~vg~~IG~Gif~~~g~~~~~aG~~~~l~~~i~~i~~~~~a~~~aEl~s~~P~-~Gg~y~y~~~ 81 (457)
T PRK10580 3 SKNKLKRGLSTRHIRFMALGSAIGTGLFYGSADAIKMAGPSVLLAYIIGGVAAYIIMRALGEMSVHNPA-ASSFSRYAQE 81 (457)
T ss_pred CCccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCCHHHHHHH
Confidence 346789999999999999999999999999999999999988999999999999999999999999999 9999999999
Q ss_pred HhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCccccCCCccccccchhhhHHHHHHHHHHHHHH
Q 008094 133 AFNELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVL 212 (578)
Q Consensus 133 ~~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 212 (578)
.+||..||++||.+++++....+......+.|+..+. | +.+.+ ...++++++...+|
T Consensus 82 ~~G~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~---~----~~~~~----------------~~~~~~~~l~~~ln 138 (457)
T PRK10580 82 NLGPLAGYITGWTYCFEILIVAIADVTAFGIYMGVWF---P----TVPHW----------------IWVLSVVLIICAVN 138 (457)
T ss_pred HcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---C----CCChH----------------HHHHHHHHHHHHHH
Confidence 9999999999999999998777776677777765442 2 12222 24556677788999
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHhhhhc-------cc-ccC---C-CC--CCCCCChHHHHHHHHHHHhhccchHHH
Q 008094 213 CWGVGESSVLNSCMTVVKVIIVIVVIFAGAF-------EV-DVS---N-WS--PFAPNGFKEILTGATVVFFAYVGFDAV 278 (578)
Q Consensus 213 ~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~-------~~-~~~---~-~~--~~~~~g~~~~~~~~~~~~~~~~G~e~~ 278 (578)
++|+|..+++|.+++.+++..++++++.++. .. +.. + ++ ++.|+++.+++.++..++|+|.|+|.+
T Consensus 139 ~~gv~~~~~~~~~~~~~~~~~l~~~ii~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~fsf~G~e~~ 218 (457)
T PRK10580 139 LMSVKVFGELEFWFSFFKVATIIIMIVAGIGIIIWGIGNGGQPTGIHNLWSNGGFFSNGWLGMVMSLQMVMFAYGGIEII 218 (457)
T ss_pred HccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCccccCCCCCCCCcchHHHHHHHHHHHHHHhCHHHH
Confidence 9999999999999999998877766544321 10 111 1 21 234667778888999999999999999
Q ss_pred hhhhhhhcCCCCChhHHHHHHHHHHHHHHHHHHHHHhccccccccC-CCChHHHHHHHcChhHHHHHHHHHHHHHHHHHH
Q 008094 279 ANSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLD-EDAPLSDAFASRGLKYVSVLISFGAVAGLTTTL 357 (578)
Q Consensus 279 ~~~~~E~k~P~k~ip~a~~~s~~~~~i~y~~~~~~~~~~~~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (578)
++++||+|||+|++|||++.+...+.++|++..+......|.+++. .++|+.+.++..+.++...++.+..+.+.+++.
T Consensus 219 ~~~a~E~knP~k~iPrAi~~~~~~~~~~y~~~~~~~~~~~p~~~i~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 298 (457)
T PRK10580 219 GITAGEAKDPEKSIPRAINSVPMRILVFYVGTLFVIMSIYPWNQVGTNGSPFVLTFQHMGITFAASILNFVVLTASLSAI 298 (457)
T ss_pred HHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHheecccCCCCccCChHHHHHHHcCChhHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999988888888765 456888888888888888888888888999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCchhhhhhcCCCCcchhHHHHHHHHHHHHHhh---cC---HHHHHHHHHHHHHHHHHHHHH
Q 008094 358 LVGLYVQSRLYLGLGRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGILAGL---FN---VRVLSHILSVGTLTGYSVVSA 431 (578)
Q Consensus 358 ~~~~~~~sR~l~~~a~d~~lP~~~~~~~~r~~~P~~ail~~~~i~~i~~~~---~~---~~~l~~~~~~~~l~~y~~~~~ 431 (578)
++.+++.||++++|||||.+|++|+|+| |+++|++|++++.++..+...+ .+ ++.+.++.+...++.|.+.++
T Consensus 299 ~~~~~~~sR~~~~~ardg~lP~~~~kv~-~~~~P~~Ai~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~ 377 (457)
T PRK10580 299 NSDVFGVGRMLHGMAEQGSAPKIFSKTS-RRGIPWVTVLVMTTALLFAVYLNYIMPENVFLVIASLATFATVWVWIMILL 377 (457)
T ss_pred HHHHHHHHHHHHHHHhCCCcCHHHHhhC-CCCCcHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999 6799999998887654432222 12 457888888888999999999
Q ss_pred HHhhheecCCCCCCCccccchhhhhhHHHHHHHHHhhhhcchhhccchhHHHHHHHHHHHHHHHHHHHhccCCCCCCCcc
Q 008094 432 CVIALRWKDRTSRNDSSRLTSAWRQGVICLIIIACCGFGAGLFYRINASYILLIVAVVIAVLASAMLCLRHGYSDPPGFS 511 (578)
Q Consensus 432 ~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 511 (578)
+.+++|+++++... ++++||
T Consensus 378 ~~~~lr~~~~~~~~------------------------------------------------------------~~~~f~ 397 (457)
T PRK10580 378 SQIAFRRRLPPEEV------------------------------------------------------------KALKFK 397 (457)
T ss_pred HHHHHHHHHHhcCC------------------------------------------------------------CCCCcc
Confidence 99999977544321 145689
Q ss_pred ccccchHHHHHHHHHHHHhhcC-----CHHHHHHHHHHHHHHHHHHhhhc
Q 008094 512 CPGVPLLPAVSIFFNLFLFAQL-----HYEAWWRFVILSFISIGLYAFYG 556 (578)
Q Consensus 512 ~p~~p~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~g~~~y~~~~ 556 (578)
.|..|+.+.++++.+.+++..+ +..+.....++++++.+.|..++
T Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~y~~~~ 447 (457)
T PRK10580 398 VPGGVATTIGGLIFLVFIIGLIGYHPDTRISLYVGFAWIVLLLIGWMFKR 447 (457)
T ss_pred cCCccHHHHHHHHHHHHHHHHHHHCccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9988999998888887754432 23345677788888888888654
|
|
| >PRK11049 D-alanine/D-serine/glycine permease; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-51 Score=433.53 Aligned_cols=366 Identities=18% Similarity=0.336 Sum_probs=310.0
Q ss_pred CCCcccccChhHHHHHHhhhhhhhhHHHHHHHHHhhhCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccchhhhhHHH
Q 008094 54 GEGLLRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGPGVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTA 133 (578)
Q Consensus 54 ~~~l~r~l~~~~~~~~~i~~~ig~g~~~~~~~~~~~~G~~~~~~~ii~~l~~~~~a~~~ael~~~~P~~~GG~y~~~~~~ 133 (578)
++++||+++.+++.++++|.+||+|+|..++.+++.+||+.+++|++++++.++.+.+++|+++..|. .|+.|.|+++.
T Consensus 15 ~~~l~r~l~~~~~~~i~vG~~IGsGif~~~g~~~~~aGp~~i~~~~i~~i~~~~~~~s~aEl~s~~~~-~~~~~~ya~~~ 93 (469)
T PRK11049 15 EQSLRRNLTNRHIQLIAIGGAIGTGLFMGSGKTISLAGPSIIFVYMIIGFMLFFVMRAMGELLLSNLE-YKSFSDFASDL 93 (469)
T ss_pred chhhhccCcHHHHHHHHHhhHHHhHHHHHhhHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCcHHHHHHHH
Confidence 35699999999999999999999999999999999999988999999999999999999999999999 89999999999
Q ss_pred hchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCccccCCCccccccchhhhHHHHHHHHHHHHHHH
Q 008094 134 FNELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLC 213 (578)
Q Consensus 134 ~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 213 (578)
+||..||++||.+++++....++.+...+.|+..++ |. .+.| ..+.+++++++.+|+
T Consensus 94 ~g~~~gf~~gW~~~~~~~~~~~a~~~a~~~~~~~~~---p~----~~~~----------------~~~~~~~~~~~~iN~ 150 (469)
T PRK11049 94 LGPWAGYFTGWTYWFCWVVTGIADVVAITAYAQFWF---PD----LSDW----------------VASLAVVLLLLSLNL 150 (469)
T ss_pred hCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CC----CcHH----------------HHHHHHHHHHHHHHH
Confidence 999999999999999998777777777777776542 21 1111 345567778889999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhhhccc-----cc----CCCC------CCCCCChHHHHHHHHHHHhhccchHHH
Q 008094 214 WGVGESSVLNSCMTVVKVIIVIVVIFAGAFEV-----DV----SNWS------PFAPNGFKEILTGATVVFFAYVGFDAV 278 (578)
Q Consensus 214 ~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-----~~----~~~~------~~~~~g~~~~~~~~~~~~~~~~G~e~~ 278 (578)
+|+|..+++|++.+.+++..++++++.++... +. .++. ++.|+|+.++..++...+|+|.|+|.+
T Consensus 151 ~g~~~~~~i~~~~~~~kl~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~~~~~~~~~~af~G~e~~ 230 (469)
T PRK11049 151 ATVKMFGEMEFWFAMIKIVAIVALIVVGLVMVAMHFQSPTGVEASFAHLWNDGGMFPKGLSGFFAGFQIAVFAFVGIELV 230 (469)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCcccccCCCCCCCcccHHHHHHHHHHHHHHHhcHHHH
Confidence 99999999999999999988888777655321 00 1111 234667778999999999999999999
Q ss_pred hhhhhhhcCCCCChhHHHHHHHHHHHHHHHHHHHHHhccccccccC-CCChHHHHHHHcChhHHHHHHHHHHHHHHHHHH
Q 008094 279 ANSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLD-EDAPLSDAFASRGLKYVSVLISFGAVAGLTTTL 357 (578)
Q Consensus 279 ~~~~~E~k~P~k~ip~a~~~s~~~~~i~y~~~~~~~~~~~~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (578)
++++||+|||+||+|||+..+.+.+.++|++.........|++++. .++|+.+.++..++++...++.+..+++.+++.
T Consensus 231 ~~~a~E~knP~r~iPrai~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~s~~~~~ 310 (469)
T PRK11049 231 GTTAAETKDPEKSLPRAINSIPIRIIMFYVFALIVIMSVTPWSSVVPDKSPFVELFVLVGLPAAASVINFVVLTSAASSA 310 (469)
T ss_pred HHHHHHhcCHhhHHHHHHHHHHHHHHHHHHHHHHHHeeecCccccCccCCcHHHHHHHcCChhHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999888889999999999998888888775 457999998888888888888889999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCchhhhhhcCCCCcchhHHHHHHHHHHHHH---hhc-C----HHHHHHHHHHHHHHHHHHH
Q 008094 358 LVGLYVQSRLYLGLGRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGILA---GLF-N----VRVLSHILSVGTLTGYSVV 429 (578)
Q Consensus 358 ~~~~~~~sR~l~~~a~d~~lP~~~~~~~~r~~~P~~ail~~~~i~~i~~---~~~-~----~~~l~~~~~~~~l~~y~~~ 429 (578)
++.+++.||++|+|||||.+|++|+|+| |+++|++|++++.++..+.. ... + ++.+.++.++...+.|.+.
T Consensus 311 ~~~~~~~sR~l~a~ardg~lP~~~~kv~-~~~tP~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~y~~~ 389 (469)
T PRK11049 311 NSGVFSTSRMLFGLAQEGVAPKAFAKLS-KRAVPAKGLTFSCICLLGGVVLLYVNPSVIGAFTLVTTVSAILFMFVWTII 389 (469)
T ss_pred HHHHHHHHHHHHHHHhCCCCCHHHHhhC-CCCCCHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999 55999999988877544311 111 2 4567777777888999999
Q ss_pred HHHHhhheecCCCCC
Q 008094 430 SACVIALRWKDRTSR 444 (578)
Q Consensus 430 ~~~~~~~r~~~~~~~ 444 (578)
.++.+++|+++|+..
T Consensus 390 ~~a~~~lr~~~p~~~ 404 (469)
T PRK11049 390 LCSYLVYRKQRPHLH 404 (469)
T ss_pred HHHHHHHHHhhhhcC
Confidence 999999998877653
|
|
| >PRK10435 cadB lysine/cadaverine antiporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-51 Score=429.66 Aligned_cols=412 Identities=19% Similarity=0.258 Sum_probs=336.1
Q ss_pred CcccccChhHHHHHHhhhhhhhhHHHHHHHHHhhhCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccchhhhhHHHhc
Q 008094 56 GLLRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGPGVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFN 135 (578)
Q Consensus 56 ~l~r~l~~~~~~~~~i~~~ig~g~~~~~~~~~~~~G~~~~~~~ii~~l~~~~~a~~~ael~~~~P~~~GG~y~~~~~~~g 135 (578)
+.+|+++.++++++++|.++|+|+|..++... .+||..+++|+++++.+++.+++++||++++|+ +||.|.|++| +|
T Consensus 2 ~~~~~lg~~~~~~l~vg~~IGsGif~lp~~~a-~~G~~~i~~wli~~~~~l~~al~~aEL~s~~P~-~GG~y~y~~~-~g 78 (435)
T PRK10435 2 SSAKKIGLFACTGVVAGNMMGSGIALLPANLA-SIGSIAIWGWIISIIGAMSLAYVYARLATKNPQ-QGGPIAYAGE-IS 78 (435)
T ss_pred CCCCcCCHHHHHHHHHhhHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC-CCChhHHHHH-HC
Confidence 35789999999999999999999999999865 578889999999999999999999999999999 9999999999 89
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCccccCCCccccccchhhhHHHHHHHHHHHHHHHhh
Q 008094 136 ELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWG 215 (578)
Q Consensus 136 ~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g 215 (578)
|.+||.+||.+|.+.+......+.....|+..++ |...++ ....+++.+++++.+++|++|
T Consensus 79 ~~~gf~~gw~~~~~~~~~~~~~~~~~~~y~~~~~---p~~~~~----------------~~~~~~~~~i~~~~~~ln~~g 139 (435)
T PRK10435 79 PAFGFQTGVLYYHANWIGNLAIGITAVSYLSTFF---PVLNDP----------------IPAGIACIAIVWVFTFVNMLG 139 (435)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---cccCCh----------------HHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999998776666677777777776543 321111 112245666777889999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhcccccC----CCCCCCCCChHHHHHHHHHHHhhccchHHHhhhhhhhcCCCCC
Q 008094 216 VGESSVLNSCMTVVKVIIVIVVIFAGAFEVDVS----NWSPFAPNGFKEILTGATVVFFAYVGFDAVANSAEESKKPQRD 291 (578)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~----~~~~~~~~g~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~P~k~ 291 (578)
+|..++++.+.+++++++++.+.+.+..+.+.+ +|.+..+.++.++..++..++|+|.|+|.+++++||+||||||
T Consensus 140 vk~~~~i~~i~~~~~li~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~faf~G~E~~~~~a~E~knP~r~ 219 (435)
T PRK10435 140 GTWVSRLTTIGLVLVLIPVVGTAIVGWHWFDAATYAANWNTSDTTDGHAIIKSILLCLWAFVGVESAAVSTGMVKNPKRT 219 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHhhcccccCCCCchHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCcccc
Confidence 999999999998888877666655554433322 3433334567789999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhccccccccC-CCChHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008094 292 LPIGILGSLLICAALYVGVSLVLTGMVPYKFLD-EDAPLSDAFASRGLKYVSVLISFGAVAGLTTTLLVGLYVQSRLYLG 370 (578)
Q Consensus 292 ip~a~~~s~~~~~i~y~~~~~~~~~~~~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~ 370 (578)
+|||++.+..++.++|++..+......|.++++ .++|+.+++++.++++...++.+..+++++++.++.++..+|..++
T Consensus 220 iPrAi~~~~~iv~ilYil~~~~~~~~~p~~~~~~~~~p~~~~~~~~~g~~~~~~i~~~~~i~~l~~~~~~~~~~~r~~~~ 299 (435)
T PRK10435 220 VPLATMLGTGLAGIIYIAATQVISGMFPASVMAASGAPFAISASTILGNWAAPLVSAFTAFACLTSLGSWMMLVGQAGVR 299 (435)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhcCCCcHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999988874 5679999999888888888888888999999999999999999999
Q ss_pred HhhcCCCchhhhhhcCCCCcchhHHHHHHHHHHHHHhh----c--------CHHHHHHHHHHHHHHHHHHHHHHHhhhee
Q 008094 371 LGRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGILAGL----F--------NVRVLSHILSVGTLTGYSVVSACVIALRW 438 (578)
Q Consensus 371 ~a~d~~lP~~~~~~~~r~~~P~~ail~~~~i~~i~~~~----~--------~~~~l~~~~~~~~l~~y~~~~~~~~~~r~ 438 (578)
|||||.+||+|+|+| |+++|++|++++.++..++... . .++.+.++.+...++.|++.+++.+++|+
T Consensus 300 ~ardG~lP~~f~k~n-k~g~P~~Al~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~y~~~~~~~ir~~~ 378 (435)
T PRK10435 300 AANDGNFPKVYGEVD-KNGIPKKGLLLAAVKMTALMILITLMNSSGGKASDLFGELTGIAVLLTMLPYFYSCVDLIRFEG 378 (435)
T ss_pred HHhCCCccHHHHhhC-cCCCCHHHHHHHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999 7899999999988776543321 1 24678888888889999999999875542
Q ss_pred cCCCCCCCccccchhhhhhHHHHHHHHHhhhhcchhhccchhHHHHHHHHHHHHHHHHHHHhccCCCCCCCccccccchH
Q 008094 439 KDRTSRNDSSRLTSAWRQGVICLIIIACCGFGAGLFYRINASYILLIVAVVIAVLASAMLCLRHGYSDPPGFSCPGVPLL 518 (578)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~p~~ 518 (578)
++ +|.+..|++
T Consensus 379 --~~-------------------------------------------------------------------~~~~~~~~~ 389 (435)
T PRK10435 379 --VN-------------------------------------------------------------------IRNFVSLIC 389 (435)
T ss_pred --Cc-------------------------------------------------------------------hhHHHHHHH
Confidence 11 222223566
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHhhhcccccCC
Q 008094 519 PAVSIFFNLFLFAQLHYEAWWRFVILSFISIGLYAFYGQYHADP 562 (578)
Q Consensus 519 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~~~~~~~~~ 562 (578)
+.++.+.+++.+. ..+|..+..+++++.+.|+.|++||.++
T Consensus 390 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (435)
T PRK10435 390 SVLGCVFCFIALM---GASSFELAGTFIVSLIILMFYARKMHER 430 (435)
T ss_pred HHHHHHHHHHHHH---HhhHHHHHHHHHHHHHHHHHHHHHhcch
Confidence 6666666666555 3457788888899999999898777554
|
|
| >KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-52 Score=439.30 Aligned_cols=489 Identities=31% Similarity=0.512 Sum_probs=379.3
Q ss_pred CCCcccccChhHHHHHHhhhhhhhhHHHHHHHHHhhhCc-HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCc-cchhhhhH
Q 008094 54 GEGLLRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGP-GVTISFLLAGAASVLNALCYAELASRFPAVV-GGAYLYAY 131 (578)
Q Consensus 54 ~~~l~r~l~~~~~~~~~i~~~ig~g~~~~~~~~~~~~G~-~~~~~~ii~~l~~~~~a~~~ael~~~~P~~~-GG~y~~~~ 131 (578)
++++||+|+.+|+.++++|..||+|+|...|.++..+|| +.+++++++++.+++.+++++|++.++|. + ||.|.|++
T Consensus 25 ~~~lkR~L~~rhl~miaiGg~IGtGl~V~sG~~l~~~gp~s~iisf~i~g~~~~~~~~~~~E~~~~~P~-~aGs~~~ya~ 103 (554)
T KOG1286|consen 25 ETELKRCLKTRHLQMLAIGGTIGTGLFVGTGSALRNGGPPSLLISFIIAGIAALLSALCLGEFAVRFPV-SAGSFYTYAY 103 (554)
T ss_pred cchhhccCCcccEEEEEecceeccceEEeccHHHhccCChhHHHHHHHHHHHHHHHHHHHHHHheeccc-ccccceeeee
Confidence 368999999999999999999999999999999988777 79999999999999999999999999998 6 99999999
Q ss_pred HHhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCccccCCCccccccchhhhHHHHH-HHHHHHH
Q 008094 132 TAFNELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPI-LLALLTI 210 (578)
Q Consensus 132 ~~~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 210 (578)
+.+||.+||.+||.+++.|+++.++++.+.+.++..+.. ........+ +..........++++ ++.++.+
T Consensus 104 ~~i~e~~aF~~gWny~l~y~i~~a~e~~a~s~~~~~w~~-~~~~~~~~~--------~~~~~~~~~~fla~~v~in~~gv 174 (554)
T KOG1286|consen 104 RFVGESLAFAIGWNYLLEYVIGLAAEARAWSSYLDYWTG-ASLIGILVD--------TVNPGGWIPDFLAFILIINLFGV 174 (554)
T ss_pred eeeCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-ccccccccc--------CCCCCccHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999851 000000000 000001111122222 2333333
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCCCC---------CCCCCChHHHHHHHHHHHhhccchHHHhhh
Q 008094 211 VLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEVDVSNWS---------PFAPNGFKEILTGATVVFFAYVGFDAVANS 281 (578)
Q Consensus 211 i~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~---------~~~~~g~~~~~~~~~~~~~~~~G~e~~~~~ 281 (578)
..+.+.+.....+++++.+.++++.+++.+|....|..+|. .|.|.|+.+++.++..+.|+|.|+|.++..
T Consensus 175 ~~~ge~ef~~~~~kvl~~v~~~Il~iVi~~G~~~~d~~~~ig~~y~~~~g~F~p~gf~Gv~s~~~~~~fsf~G~e~va~~ 254 (554)
T KOG1286|consen 175 LAYGEVEFSLAFNKILTAVGFIILAIVIIAGGGPADVKNWIGFRYWHDPGAFFPFGFKGVLSGAATAFFSFIGFELVATT 254 (554)
T ss_pred hhccceeehHHHHHHHHHHHHHHhheeeecCCCcCCcCCCcCccccCCCCCcCCCCcceeeHHHHHHHHHHhhHHHHHHH
Confidence 33366777888899999999888888888888776655553 277888999999999999999999999999
Q ss_pred hhhhcCCCCChhHHHHHHHHHHHHHHHHHHHHHhccccccc--cCCCChHHHHHH-HcCh---hHHHHHHHHHHHHHHHH
Q 008094 282 AEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKF--LDEDAPLSDAFA-SRGL---KYVSVLISFGAVAGLTT 355 (578)
Q Consensus 282 ~~E~k~P~k~ip~a~~~s~~~~~i~y~~~~~~~~~~~~~~~--~~~~~p~~~~~~-~~~~---~~~~~~~~~~~~~~~~~ 355 (578)
+||+|||||++|+|+..++.++.++|++..+.+...+|+++ ++++.|....+. ..+. +.+..++++.+++++.+
T Consensus 255 a~E~kNP~k~IP~ai~~s~~ri~~~Yi~~~~~l~l~vpy~~~~L~~~~~~~spF~iai~~~~~k~~~~ivna~iL~~~~s 334 (554)
T KOG1286|consen 255 AEEAKNPRKAIPKAIKQSLLRILLFYILSSIVLGLLVPYNDPRLDPGAALASPFVIAIGNAGAKYLPHIVNAGILIGLLS 334 (554)
T ss_pred HHhccCCcccccHHHHHHHHHHHHHHHHHHHHheEEeccCccccCCCCccccHHHHHHhccCccccchhhhHHHHHHHHH
Confidence 99999999999999999999999999999999999999987 777665555555 4444 44445999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCchhhhhhcCCCCcchhHHHHHHHHHHHHHhhcCH------HHHHHHHHHHHHHHHHHH
Q 008094 356 TLLVGLYVQSRLYLGLGRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGILAGLFNV------RVLSHILSVGTLTGYSVV 429 (578)
Q Consensus 356 ~~~~~~~~~sR~l~~~a~d~~lP~~~~~~~~r~~~P~~ail~~~~i~~i~~~~~~~------~~l~~~~~~~~l~~y~~~ 429 (578)
++|+.+++++|.+++||+||.+||+|+++|+| |+|++|++.+.+++.+..+..+. +++.++.+++.++.|.++
T Consensus 335 ~~n~~~y~~sR~l~amA~~G~~Pk~f~~v~~~-g~P~~a~~v~~~~~~l~~~~~~~~~~~~f~~L~~~~si~tl~~w~~i 413 (554)
T KOG1286|consen 335 SLNSSLYAGSRVLYALAKDGLAPKFFARVDRR-GVPLVAVLVSGLFGALAALNFSLGAATVFNWLVNLSSIGTLFAWTLV 413 (554)
T ss_pred HHHHHhHHhHHHHHHHHhcCCcchHHhhcCCC-CCchhHHHHHHHHHHHHHHHhccccchHHHHHHHHHhHHHHHHHHHH
Confidence 99999999999999999999999999999966 99999999999998888777766 999999999999999999
Q ss_pred HHHHhhheecCCCCC-----CCccccchhhhh---hHHHHHHHHHhhhhcchhhc--cchhHHH---HHHHHHHHHHHHH
Q 008094 430 SACVIALRWKDRTSR-----NDSSRLTSAWRQ---GVICLIIIACCGFGAGLFYR--INASYIL---LIVAVVIAVLASA 496 (578)
Q Consensus 430 ~~~~~~~r~~~~~~~-----~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~--~~~~~~~---~~~~~~~~~~~~~ 496 (578)
+++++++|+..++.. .+++.+..++.. ...+...+....++.+.... ++.+... +...+.++..+.+
T Consensus 414 ~~~~i~~R~a~~~q~~~~~~~~~~s~~~~~gs~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~~yl~~~i~l~~~i~~ 493 (554)
T KOG1286|consen 414 ALSHLRFRYAMKVQGRSLDELPYKSPTGPYGSYYGLLVNILILLAQFYVAFFPIGSEFSAWGFFEAYLGLPILLIFYIGY 493 (554)
T ss_pred HHHHeeeeecccccCCCcccccccCCCCCchhHHHHHHHHHHHHHHHhccccccCCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 999999998754332 122222223332 23344444444444444433 3333222 2223233333333
Q ss_pred HHHhccCCCCCCCccccccchHHHHHHHHHHHHhhcCCHHHHH--HHHHHHHHHHHHHhh-hcccccC
Q 008094 497 MLCLRHGYSDPPGFSCPGVPLLPAVSIFFNLFLFAQLHYEAWW--RFVILSFISIGLYAF-YGQYHAD 561 (578)
Q Consensus 497 ~~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~y~~-~~~~~~~ 561 (578)
..++|.+.. ..|+.|.+.+..+..++..++.++|. ....|...+...|.+ |+.+|..
T Consensus 494 ~i~~~~~~~--------~vp~~~~idl~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~ 553 (554)
T KOG1286|consen 494 KIYAKPTNT--------LVPLSPCIDLDTNIYLMDSLDAETWIEERFEVWLEIGLLIYFFWYGIRHSK 553 (554)
T ss_pred heeeccccc--------ccCCccceEEEecceeeccccchhhhhhhHHHHhhhhhHHHHHhhhhhccc
Confidence 333333322 45677777778888888888888899 999999999999987 7777754
|
|
| >COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-51 Score=407.49 Aligned_cols=421 Identities=23% Similarity=0.360 Sum_probs=363.4
Q ss_pred CCCCcccccChhHHHHHHhhhhhhhhHHHHHHHHHhhhCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccchhhhhHH
Q 008094 53 DGEGLLRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGPGVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYT 132 (578)
Q Consensus 53 ~~~~l~r~l~~~~~~~~~i~~~ig~g~~~~~~~~~~~~G~~~~~~~ii~~l~~~~~a~~~ael~~~~P~~~GG~y~~~~~ 132 (578)
+++++||.|+.+|...+++|..||+|+|...+...+.+||+.+++++++|++.+.+.-.++||...-|+ +|+.-+|+++
T Consensus 7 ~~~~l~rgL~~RHIqlIAiGGaIGtGLFlGSg~~I~~AGPSvlLaY~I~G~~~f~iMRaLGEm~~~~p~-~gSF~~~a~~ 85 (462)
T COG1113 7 EEQGLKRGLKNRHIQLIAIGGAIGTGLFLGSGSAIAMAGPSVLLAYLIAGIFVFLIMRALGEMLVANPV-SGSFSDYARK 85 (462)
T ss_pred cchhhhhhhHHHHHHHHHHhhhhhhhhhcccchhhhhhCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CCcHHHHHHH
Confidence 456799999999999999999999999999999999999999999999999999999999999999999 9999999999
Q ss_pred HhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCccccCCCccccccchhhhHHHHHHHHHHHHHH
Q 008094 133 AFNELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVL 212 (578)
Q Consensus 133 ~~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 212 (578)
.+||..||.+||.||+.|+....+...+.+.|++.++. +.|.| +.+++.+++...+|
T Consensus 86 ~lG~~Agf~tgW~YW~~wv~v~~ae~tAi~~y~~~WfP-------~vP~W----------------v~al~~~~l~~~~N 142 (462)
T COG1113 86 YLGPWAGFLTGWTYWFFWVLVGIAELTAIGIYLQFWFP-------DVPQW----------------VFALAAVVLLLAVN 142 (462)
T ss_pred HhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-------CCcHH----------------HHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998853 34666 47888899999999
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHhhhhcc-----------cccCCC---CCCCCCChHHHHHHHHHHHhhccchHHH
Q 008094 213 CWGVGESSVLNSCMTVVKVIIVIVVIFAGAFE-----------VDVSNW---SPFAPNGFKEILTGATVVFFAYVGFDAV 278 (578)
Q Consensus 213 ~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-----------~~~~~~---~~~~~~g~~~~~~~~~~~~~~~~G~e~~ 278 (578)
..++|.++..+..+..+|++.++.+++.|... .+.+|+ .+|.|+|+.+++.++...+|+|.|.|.+
T Consensus 143 L~sVk~FGE~EfWfAlIKV~aIi~~Iv~G~~ll~~g~~~~~~~~g~snl~~hGGffP~G~~g~~~~~~~v~Faf~GiElv 222 (462)
T COG1113 143 LISVKVFGELEFWFALIKVAAIIAFIVVGIVLLFGGFGGGGGAAGFSNLWDHGGFFPNGFLGFLSALQIVMFAFGGIELV 222 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCccccccccCCCcCCCchHHHHHHHHHHHHHHhhHHHH
Confidence 99999999999999999999998888876531 122232 2578999999999999999999999999
Q ss_pred hhhhhhhcCCCCChhHHHHHHHHHHHHHHHHHHHHHhccccccccCC-CChHHHHHHHcChhHHHHHHHHHHHHHHHHHH
Q 008094 279 ANSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLDE-DAPLSDAFASRGLKYVSVLISFGAVAGLTTTL 357 (578)
Q Consensus 279 ~~~~~E~k~P~k~ip~a~~~s~~~~~i~y~~~~~~~~~~~~~~~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (578)
...++|+|||+|.+|||+-.-...+.++|+...+.+....|+++.++ ++|+.+.++..|.+....++++.++.+.++++
T Consensus 223 GitA~Et~dP~k~ipkAin~V~~RI~iFYvgsl~vi~~l~PW~~~~~~~SPFV~~f~~iGi~~Aa~i~N~VVLtAa~S~~ 302 (462)
T COG1113 223 GITAAEAKDPEKAIPKAINSVIWRILIFYVGSLFVILSLYPWNQIGEDGSPFVTVFSLIGIPFAAGIMNFVVLTAALSAL 302 (462)
T ss_pred HHHHHhhcChhhHHHHHHhhhhHHHHHHHHHHHHHHheeccccccCCCCCcHHHHHHHcCCcccccceeEEEeechhhcc
Confidence 99999999999999999999999999999999999999999998764 56999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCchhhhhhcCCCCcchhHHHHHHHHHHHHHhhc------CHHHHHHHHHHHHHHHHHHHHH
Q 008094 358 LVGLYVQSRLYLGLGRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGILAGLF------NVRVLSHILSVGTLTGYSVVSA 431 (578)
Q Consensus 358 ~~~~~~~sR~l~~~a~d~~lP~~~~~~~~r~~~P~~ail~~~~i~~i~~~~~------~~~~l~~~~~~~~l~~y~~~~~ 431 (578)
|+.+++++|++|++|+||..||.|+|+| |+++|++|++++.+...+...+. .++.+.+..+.+.+..|.+..+
T Consensus 303 NSglystsRmL~~la~~g~APk~~~kls-k~gVP~~ai~~s~~~~~~~V~Lny~~P~~vF~~v~s~s~~~~l~vW~~I~~ 381 (462)
T COG1113 303 NSGLYSTSRMLYSLAKQGDAPKAFAKLS-KRGVPVNAILLSAVVLLLGVVLNYILPEKVFELVTSSSGLGLLFVWLMILL 381 (462)
T ss_pred cccccccchHHHHHhhcCcccHhHhhcc-ccCCCHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999 88999999988887755443331 2467888888888999999999
Q ss_pred HHhhheecCCCCCCCccccchhhhhhHHHHHHHHHhhhhcchhhccchhHHHHHHHHHHHHHHHHHHHhccCCCCCCCcc
Q 008094 432 CVIALRWKDRTSRNDSSRLTSAWRQGVICLIIIACCGFGAGLFYRINASYILLIVAVVIAVLASAMLCLRHGYSDPPGFS 511 (578)
Q Consensus 432 ~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 511 (578)
|.+++|+++++..+ +.+||
T Consensus 382 s~l~~rk~~~~~~~-------------------------------------------------------------~~~fk 400 (462)
T COG1113 382 SQLKLRKAKPAEGK-------------------------------------------------------------KLKFK 400 (462)
T ss_pred HHHHHHhcchhccc-------------------------------------------------------------Ccccc
Confidence 99999985554422 45699
Q ss_pred ccccchHHHHHHHHHHHHhhcC----CH-HHHHHHHHHHHHHHHHHhhhcccc
Q 008094 512 CPGVPLLPAVSIFFNLFLFAQL----HY-EAWWRFVILSFISIGLYAFYGQYH 559 (578)
Q Consensus 512 ~p~~p~~~~~~~~~~~~~~~~~----~~-~~~~~~~~~~~~g~~~y~~~~~~~ 559 (578)
+|++|+...+.++..++.+..+ +. .......+|.++-.+.|+..++|+
T Consensus 401 m~~~p~~~~l~l~fl~~vlv~m~~~~~t~~~~~~~~~~~~~l~i~~~~~~~~~ 453 (462)
T COG1113 401 MPLYPFTNYLTLAFLAFVLVLMLFDPDTRISLLVGPVWLVLLGIGYLVKRKKK 453 (462)
T ss_pred cccccHHHHHHHHHHHHHHHHHHcCcccchHHHHHHHHHHHHHHHHHHhhhhh
Confidence 9999999988877766654432 22 234444455444444454444333
|
|
| >TIGR00911 2A0308 L-type amino acid transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-50 Score=434.42 Aligned_cols=374 Identities=26% Similarity=0.376 Sum_probs=305.0
Q ss_pred CCCCcccccChhHHHHHHhhhhhhhhHHHHHHHHHhhhCc-H-HHHHHHHHHHHHHHHHHHHHHHhhcCCCCccchhhhh
Q 008094 53 DGEGLLRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGP-G-VTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYA 130 (578)
Q Consensus 53 ~~~~l~r~l~~~~~~~~~i~~~ig~g~~~~~~~~~~~~G~-~-~~~~~ii~~l~~~~~a~~~ael~~~~P~~~GG~y~~~ 130 (578)
+++++||+++.+++++++++.++|+|+|..++..++.+|+ + .+++|++++++.++.+++++|+++++|+ +||.|+|+
T Consensus 36 ~~~~l~r~l~~~~~~~l~vg~iiGsGif~~~~~~~~~~G~~g~~~~~~ii~~i~~~~~al~~aELas~~P~-sGG~y~~~ 114 (501)
T TIGR00911 36 EAVALKKEITLLSGVGIIVGTIIGSGIFVSPKGVLKNAGSVGLALIMWAVCGIFSIVGALVYAELGTTIPK-SGGEYNYI 114 (501)
T ss_pred cccccCccccHhHhhHhheeceEEeeEeecHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-CCchhhhH
Confidence 5577999999999999999999999999999999988887 4 5689999999999999999999999999 99999999
Q ss_pred HHHhchhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhcccccCCCCccccCCCccccccchhhhHHHHHHHHHHH
Q 008094 131 YTAFNELTAFLVFAQLMLD-YHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLT 209 (578)
Q Consensus 131 ~~~~g~~~g~~~g~~~~l~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (578)
++.+||..||+++|..++. +....+..+..++.|+... ..|. ...+.| ...+++.+++++.+
T Consensus 115 ~~~~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~--~~~~--~~~~~~-------------~~~~i~~~~i~~~~ 177 (501)
T TIGR00911 115 LEVFGPLLAFLRLWIELLVIRPGSQAVNALNFAIYILTP--VFPD--CEVPEW-------------AIRLVAVLCVLLLT 177 (501)
T ss_pred HhHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hcCC--CCCchH-------------HHHHHHHHHHHHHH
Confidence 9999999999999987763 3445556666666665331 1121 111222 22357777888999
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhhcccccC---CC--C-CCC--CCChHHHHHHHHHHHhhccchHHHhhh
Q 008094 210 IVLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEVDVS---NW--S-PFA--PNGFKEILTGATVVFFAYVGFDAVANS 281 (578)
Q Consensus 210 ~i~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~--~-~~~--~~g~~~~~~~~~~~~~~~~G~e~~~~~ 281 (578)
.+|++|+|..++++.+.+.++++.++++++.++...... +. + .+. +++..++..++..++|+|.|+|.++++
T Consensus 178 ~ln~~Gvk~~~~~~~i~~~~~l~~l~~~ii~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~a~~~~~~af~G~e~~~~~ 257 (501)
T TIGR00911 178 LVNCLSVKWATRVQDIFTACKLLALLLIIITGWVQLGKGGVESLNPKNAFEGTETSAGGIVLAFYSGIWAYGGWNYLNFV 257 (501)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCcccccCCCCCcHHHHHHHHHHHHHHHHhHHHHhhh
Confidence 999999999999999999999988887777665432111 11 1 111 134567888999999999999999999
Q ss_pred hhhhcCCCCChhHHHHHHHHHHHHHHHHHHHHHhccccccccCCCChHHHHH-HHcChhHHHHHHHHHHHHHHHHHHHHH
Q 008094 282 AEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLDEDAPLSDAF-ASRGLKYVSVLISFGAVAGLTTTLLVG 360 (578)
Q Consensus 282 ~~E~k~P~k~ip~a~~~s~~~~~i~y~~~~~~~~~~~~~~~~~~~~p~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (578)
+||+|||+|++|||++.+..+++++|++..++.....|.+++..+++....+ +...+ ....++.+...++.+++.++.
T Consensus 258 a~E~knP~r~iPrAi~~s~~~v~~~Y~l~~~a~~~~~~~~~l~~~~~~~~~~~~~~~g-~~~~~i~~~~~is~~~~~~~~ 336 (501)
T TIGR00911 258 TEEVKNPYRTLPIAIIISMPIVTFIYVLTNIAYFTVLSPEELLASLAVAVDFGERLLG-VMSWAMPALVGLSCFGSVNGS 336 (501)
T ss_pred HHHhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhcChHHHHHHHHHHhh-hHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999998888888776544333333 33323 455667777888999999999
Q ss_pred HHHHHHHHHHHhhcCCCchhhhhhcCCCCcchhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHhhheecC
Q 008094 361 LYVQSRLYLGLGRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGILAGLFNVRVLSHILSVGTLTGYSVVSACVIALRWKD 440 (578)
Q Consensus 361 ~~~~sR~l~~~a~d~~lP~~~~~~~~r~~~P~~ail~~~~i~~i~~~~~~~~~l~~~~~~~~l~~y~~~~~~~~~~r~~~ 440 (578)
+.+.||++++|||||.+|++|+|+|||+++|++|+++..+++.+.....+...+.++.+....+.|.+..++.+++|+|+
T Consensus 337 ~~~~sR~l~a~ardg~lP~~~~~v~~~~~~P~~all~~~~i~~l~~~~~~~~~l~~~~~~~~~i~y~l~~~a~i~lR~~~ 416 (501)
T TIGR00911 337 LFSSSRLFFVGGREGHLPSLLSMIHVKRLTPLPSLLIVCTLTLLMLFSGDIYSLINLISFANWLFNALAVAGLLWLRYKR 416 (501)
T ss_pred HHHHHHHHHHHHhcCCccHHHHHhcCCCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHheeccC
Confidence 99999999999999999999999999999999999998888776666667777778888888899999999999999988
Q ss_pred CCCCC
Q 008094 441 RTSRN 445 (578)
Q Consensus 441 ~~~~~ 445 (578)
|+.+|
T Consensus 417 p~~~r 421 (501)
T TIGR00911 417 PEMNR 421 (501)
T ss_pred CCCCC
Confidence 77633
|
|
| >TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-50 Score=427.61 Aligned_cols=421 Identities=23% Similarity=0.352 Sum_probs=347.7
Q ss_pred cccccChhHHHHHHhhhhhhhhHHHHHHHHHhhhCcH-HHHHHHHHHHHHHHHHHHHHHHhhcCCCCccchhhhhHHHhc
Q 008094 57 LLRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGPG-VTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFN 135 (578)
Q Consensus 57 l~r~l~~~~~~~~~i~~~ig~g~~~~~~~~~~~~G~~-~~~~~ii~~l~~~~~a~~~ael~~~~P~~~GG~y~~~~~~~g 135 (578)
.+|+++.+++.+++++.++|+|+|..++...+.+||. .+++|++++++.++.+++|+|+++++|+++||.|+|+++.+|
T Consensus 5 ~~~~l~~~~~~~l~ig~vIGsGif~~~~~~~~~~g~~~~~~~wli~~~~~~~~al~~aEl~s~~P~~sGG~y~y~~~~~G 84 (473)
T TIGR00905 5 KSKKLGLFALTALVIGSMIGSGIFSLPQNLASVAGPGAVIIGWIITGVGMLALAFVFAILATKKPELDGGIYAYAREGFG 84 (473)
T ss_pred cCCCccHHHHHHHHHHHHHhHHHHHhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCChhhhHHhHcc
Confidence 4788999999999999999999999999988888884 789999999999999999999999999857999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCccccCCCccccccchhhhHHHHHHHHHHHHHHHhh
Q 008094 136 ELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWG 215 (578)
Q Consensus 136 ~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g 215 (578)
|..||.+||.+|+++.......+....+++..++.. ++.+ .+....+.+.+++++...+|++|
T Consensus 85 ~~~gf~~gw~~~~~~~~~~~~~~~~~~~~l~~~~p~---~~~~--------------~~~~~~~~~~~~~~~~~~ln~~G 147 (473)
T TIGR00905 85 PYIGFMSGWGYWLSAWIGNVAYAVLLFSALGYFFPL---FGSG--------------NPVPSILGASVLLWVFTFLVLRG 147 (473)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---hcCC--------------CcHHHHHHHHHHHHHHHHHHHhC
Confidence 999999999999998887777777777777665431 1111 01122356677777889999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCCCC-CC----C---CCChHHHHHHHHHHHhhccchHHHhhhhhhhcC
Q 008094 216 VGESSVLNSCMTVVKVIIVIVVIFAGAFEVDVSNWS-PF----A---PNGFKEILTGATVVFFAYVGFDAVANSAEESKK 287 (578)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~----~---~~g~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~ 287 (578)
+|..+|+|.+.+.+++++++++++.+....+.+++. ++ . ++++.++..++...+|+|.|+|.+++++||+||
T Consensus 148 i~~~~~i~~~~~~~~l~~l~~~ii~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~ 227 (473)
T TIGR00905 148 VRQAAFINTITTIAKLIPLFLFIIIGWFWFKLDLFTADFWGHDVPSLGSVFSQVKNTMLVTLWVFIGIEGAVVSSGRAKN 227 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhcccccCccCCCcccchHHHHHHHHHHHHHHHHhHHHHHHHHHHHhc
Confidence 999999999999999988888777665433322221 11 1 124557788889999999999999999999999
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHhccccccccC-CCCh-HHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008094 288 PQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLD-EDAP-LSDAFASRGLKYVSVLISFGAVAGLTTTLLVGLYVQS 365 (578)
Q Consensus 288 P~k~ip~a~~~s~~~~~i~y~~~~~~~~~~~~~~~~~-~~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 365 (578)
+||+|||++.+..+++++|++...+.....|.+++. .++| ..++.+...+++...++.+..+++.+++.++.+.+.|
T Consensus 228 -~r~iPrai~~~~~i~~~~Yil~~~~~~~~~~~~~l~~~~~p~~~~~~~~~~g~~~~~~i~i~~~is~~~~~~~~~~~~s 306 (473)
T TIGR00905 228 -KSDVGKATVLGTLGALVIYILITLLSLGVLPQQELANLPNPSMAAVLEMIVGKWGAVLISLGLIISVLGSLLSWTMLAA 306 (473)
T ss_pred -cccchHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHhhCCCchHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999888888764 4667 6777778878888888899999999999999999999
Q ss_pred HHHHHHhhcCCCchhhhhhcCCCCcchhHHHHHHHHHHHHHhh-----cCHHHHHHHHHHHHHHHHHHHHHHHhhheecC
Q 008094 366 RLYLGLGRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGILAGL-----FNVRVLSHILSVGTLTGYSVVSACVIALRWKD 440 (578)
Q Consensus 366 R~l~~~a~d~~lP~~~~~~~~r~~~P~~ail~~~~i~~i~~~~-----~~~~~l~~~~~~~~l~~y~~~~~~~~~~r~~~ 440 (578)
|++|+|||||.+|++|+|+|| +++|++|++++.+++.++.+. .+++.+.++.+++.++.|.+.+++.+++|+|+
T Consensus 307 R~~~amardg~lP~~~~~v~~-~~tP~~Ai~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~i~y~~~~~a~~~lr~~~ 385 (473)
T TIGR00905 307 EVPFSAAKDGLFPKIFGRVNK-NGAPSVALLLTNILIQLFLLLTLLTSSAYNVLVSLAVVMILVPYLLSAAYLLKLAKVG 385 (473)
T ss_pred HHHHHHHhCCChhHHHHhhCc-cCCCHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 999999999999999999995 599999999998887654432 24678888899999999999999999988765
Q ss_pred CCCCCCccccchhhhhhHHHHHHHHHhhhhcchhhccchhHHHHHHHHHHHHHHHHHHHhccCCCCCCCccccccchHHH
Q 008094 441 RTSRNDSSRLTSAWRQGVICLIIIACCGFGAGLFYRINASYILLIVAVVIAVLASAMLCLRHGYSDPPGFSCPGVPLLPA 520 (578)
Q Consensus 441 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~p~~~~ 520 (578)
+.+ + .+.|..|++++
T Consensus 386 ~~~---------------------------------------------------------------~--~~~~~~~~~~~ 400 (473)
T TIGR00905 386 TYP---------------------------------------------------------------K--IKNRKALIVGV 400 (473)
T ss_pred Ccc---------------------------------------------------------------c--cccchHHHHHH
Confidence 211 0 12234468888
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHhhhcccccC
Q 008094 521 VSIFFNLFLFAQLHYEAWWRFVILSFISIGLYAFYGQYHAD 561 (578)
Q Consensus 521 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~~~~~~~~ 561 (578)
++.+.+.++....++.+.....+++++|+.+|+++.+++++
T Consensus 401 l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~~~~~~~~ 441 (473)
T TIGR00905 401 IACVYSIWLLYAAGLKYLLLGFILYAPGIIFYGRARKERGK 441 (473)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 88888888877777777778888889999999976666543
|
This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions. |
| >TIGR00913 2A0310 amino acid permease (yeast) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-50 Score=430.93 Aligned_cols=421 Identities=19% Similarity=0.289 Sum_probs=336.0
Q ss_pred ccccChhHHHHHHhhhhhhhhHHHHHHHHHhhhCc-HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccchhhhhHHHhch
Q 008094 58 LRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGP-GVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNE 136 (578)
Q Consensus 58 ~r~l~~~~~~~~~i~~~ig~g~~~~~~~~~~~~G~-~~~~~~ii~~l~~~~~a~~~ael~~~~P~~~GG~y~~~~~~~g~ 136 (578)
||+++.+|+.++++|.++|+|+|..++..++.+|| +.+++|++++++.++.+++++||++++|+.+||.|.|+++.+||
T Consensus 1 ~r~L~~~~~~~l~vg~~IGsGif~~~~~~~~~~Gp~~~i~~~~i~~~~~~~~a~~~aEl~s~~P~~gG~~~~~~~~~~g~ 80 (478)
T TIGR00913 1 KKSLKQRHIQMIALGGTIGTGLLVGSGTALATGGPAGLLIGYAIMGSIIYCVMQSLGEMATFYPVVSGSFATYASRFVDP 80 (478)
T ss_pred CCCCcHHHHHHHHHhccccchhhhcchhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHcCc
Confidence 58899999999999999999999999999999999 57999999999999999999999999996255677899999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCccccCCCccccccchhhhHHHHHHHHHHHHHHHhhh
Q 008094 137 LTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGV 216 (578)
Q Consensus 137 ~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~ 216 (578)
..||.+||.+|++|+...+......+.++..+. + +.+.+ ....+++++.+++|++|+
T Consensus 81 ~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~---~----~~~~~----------------~~~~~~~~~~~~in~~gv 137 (478)
T TIGR00913 81 AFGFAVGWNYWLQWLIVLPLELVTASMTIQYWT---D----KVNPA----------------VWIAIFYVFIVIINLFGV 137 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC---C----CCCHH----------------HHHHHHHHHHHHHHHhcc
Confidence 999999999999999998888888887776431 1 11111 133445667789999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhccc--c--------cCCC---CCCCCC----ChHHHHHHHHHHHhhccchHHHh
Q 008094 217 GESSVLNSCMTVVKVIIVIVVIFAGAFEV--D--------VSNW---SPFAPN----GFKEILTGATVVFFAYVGFDAVA 279 (578)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~--------~~~~---~~~~~~----g~~~~~~~~~~~~~~~~G~e~~~ 279 (578)
|..+++|.+.+.++++.++.+++.++... + ..++ +.+.|. ++.++..++...+|+|.|+|.++
T Consensus 138 ~~~~~~~~~~~~~ki~~l~~~ii~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~ 217 (478)
T TIGR00913 138 KGYGEAEFWFSSIKILAIIGFIILSIILNCGGGPNHGYIGFRYWHDPGAFAGGTIGGRFKGVCSVFVTAAFSFGGTELVA 217 (478)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCcccccCCCCCCCCCCccchHHHHHHHHHHHHhhhccHHHHH
Confidence 99999999999888877766655443211 0 0111 112222 25678889999999999999999
Q ss_pred hhhhhhcCCCCChhHHHHHHHHHHHHHHHHHHHHHhccccccc--c-C-------CCChHHHHHHHcChhHHHHHHHHHH
Q 008094 280 NSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKF--L-D-------EDAPLSDAFASRGLKYVSVLISFGA 349 (578)
Q Consensus 280 ~~~~E~k~P~k~ip~a~~~s~~~~~i~y~~~~~~~~~~~~~~~--~-~-------~~~p~~~~~~~~~~~~~~~~~~~~~ 349 (578)
+++||+|||+||+|||++.+..++.++|++..++.....|.++ + + .++|+....+..+.++...++.+..
T Consensus 218 ~~a~E~knP~r~iPrai~~~~~~~~~~Y~l~~~~~~~~~p~~~~~l~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~ 297 (478)
T TIGR00913 218 LTAGEAANPRKSIPRAAKRTFWRILVFYILTLFLIGFLVPYNDPRLLSSSSSSDSAASPFVIAIQNHGIKVLPHIFNAVI 297 (478)
T ss_pred HHHHhhcChhhHHHHHHHHHHHHHHHHHHHHHHHheeeccCCChhhcccccCCCcCCCcHHHHHHHcCCchHhHHHHHHH
Confidence 9999999999999999999999999999999888888887653 2 1 1268877778888888888889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhhhhcCCCCcchhHHHHHHHHHHHHHhhc------CHHHHHHHHHHHHH
Q 008094 350 VAGLTTTLLVGLYVQSRLYLGLGRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGILAGLF------NVRVLSHILSVGTL 423 (578)
Q Consensus 350 ~~~~~~~~~~~~~~~sR~l~~~a~d~~lP~~~~~~~~r~~~P~~ail~~~~i~~i~~~~~------~~~~l~~~~~~~~l 423 (578)
+++.+++.++.+++.||++|+|||||.+|++|+|+| |+++|++|++++.+++.+..+.. .++.+.++.+...+
T Consensus 298 ~~s~~~~~~~~~~~~sR~l~a~ardg~lP~~f~k~~-~~~~P~~Ai~~~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~~ 376 (478)
T TIGR00913 298 LISVLSAANSSLYASSRTLYALAHQGLAPKIFAYVD-RRGVPYVAVIVSSLFGLLAFLAVSKKEAEVFTWLLNISGLSGF 376 (478)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhCCcccHHHHhhC-CCCCCHHHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999 78999999999988865443332 24667888888999
Q ss_pred HHHHHHHHHHhhheecCCCCCCCccccchhhhhhHHHHHHHHHhhhhcchhhccchhHHHHHHHHHHHHHHHHHHHhccC
Q 008094 424 TGYSVVSACVIALRWKDRTSRNDSSRLTSAWRQGVICLIIIACCGFGAGLFYRINASYILLIVAVVIAVLASAMLCLRHG 503 (578)
Q Consensus 424 ~~y~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 (578)
+.|++.+++.+++|++++++.++.
T Consensus 377 i~y~~~~~~~i~~r~~~~~~~~~~-------------------------------------------------------- 400 (478)
T TIGR00913 377 FTWMCICLSHIRFRKAMKAQGRSL-------------------------------------------------------- 400 (478)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCc--------------------------------------------------------
Confidence 999999999999987754432221
Q ss_pred CCCCCCccccccchHHHHHHHHHHHHhhcC----------CHHHHHHHHHHHHHHHHHHhhhccccc
Q 008094 504 YSDPPGFSCPGVPLLPAVSIFFNLFLFAQL----------HYEAWWRFVILSFISIGLYAFYGQYHA 560 (578)
Q Consensus 504 ~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~g~~~y~~~~~~~~ 560 (578)
.+++||.|..|+.+.++++.++++.... +..+.........+.+++|.+|+.+++
T Consensus 401 --~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (478)
T TIGR00913 401 --DELPYKSQTGPYGSYYALFFNILILIAQGYVAFAPVKFSAKSFFEAYLSLPIFIALYIGHKVYKR 465 (478)
T ss_pred --ccCCccCCCcchHHHHHHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 2567999999999998888877764421 333444555555666667776665544
|
|
| >PRK10197 gamma-aminobutyrate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-50 Score=424.62 Aligned_cols=408 Identities=21% Similarity=0.281 Sum_probs=335.9
Q ss_pred HHhhhhhhhhHHHHHHHHHhhhCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccchhhhhHHHhchhhHHHHHHHHHH
Q 008094 69 IGVGASVGAGIFVVTGTVARDAGPGVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNELTAFLVFAQLML 148 (578)
Q Consensus 69 ~~i~~~ig~g~~~~~~~~~~~~G~~~~~~~ii~~l~~~~~a~~~ael~~~~P~~~GG~y~~~~~~~g~~~g~~~g~~~~l 148 (578)
+++|.+||+|+|..++..++.+||..+++|++++++.++.+++++||++++|+ +||.|.|++|.+||..||.+||.+|+
T Consensus 2 ~~ig~~IGsGif~~~g~~~~~aG~~~ll~~~i~gi~~~~~al~~aEL~s~~P~-~Gg~y~y~~~~~G~~~gf~~gw~~~~ 80 (446)
T PRK10197 2 LSIAGVIGASLFVGSSVAIAEAGPAVLLAYLFAGLLVVMIMRMLAEMAVATPD-TGSFSTYADKAIGRWAGYTIGWLYWW 80 (446)
T ss_pred eeecchhHhHHHHHhHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CCCHHHHHHHHcChHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999 99999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccccCCCCccccCCCccccccchhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 008094 149 DYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGVGESSVLNSCMTV 228 (578)
Q Consensus 149 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~ 228 (578)
++....+..+...+.++..+. | +.+ ...++.+++++++.+|++|+|..+++|.+.+.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~---~----~~~----------------~~~~~~~~l~~~~~lN~~gv~~~~~i~~~~~~ 137 (446)
T PRK10197 81 FWVLVIPLEANIAAMILHSWV---P----GIP----------------IWLFSLVITLALTGSNLLSVKNYGEFEFWLAL 137 (446)
T ss_pred HHHHHHHHHHHHHHHHHHhcc---c----cCc----------------HHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHH
Confidence 999888877766665554321 1 111 22477888888999999999999999999999
Q ss_pred HHHHHHHHHHhhhhcccc-------cCC----C--CCCCCCChHHHHHHHHHHHhhccchHHHhhhhhhhcCCCCChhHH
Q 008094 229 VKVIIVIVVIFAGAFEVD-------VSN----W--SPFAPNGFKEILTGATVVFFAYVGFDAVANSAEESKKPQRDLPIG 295 (578)
Q Consensus 229 ~~~~~~~~~~i~~~~~~~-------~~~----~--~~~~~~g~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~P~k~ip~a 295 (578)
+|++.++++++.+..... ..+ + .++.|+++.++..++..++|+|.|+|.+++.+||+||||||+|||
T Consensus 138 ~ki~~li~~ii~~~~~~~g~~~~~~~~~~~~~~~~~~~~p~g~~~~~~a~~~~~faf~G~e~~~~~a~E~knP~r~iPra 217 (446)
T PRK10197 138 CKVIAILAFIFLGAVAISGFYPYAEVSGISRLWDSGGFMPNGFGAVLSAMLITMFSFMGAEIVTIAAAESDTPEKHIVRA 217 (446)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCCCcchhcCCCCCCCcccHHHHHHHHHHHHHHHhCHHHHHHHHHHhcChhhhHHHH
Confidence 999888777665543110 011 1 134467888999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhccccccccCC--CChHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008094 296 ILGSLLICAALYVGVSLVLTGMVPYKFLDE--DAPLSDAFASRGLKYVSVLISFGAVAGLTTTLLVGLYVQSRLYLGLGR 373 (578)
Q Consensus 296 ~~~s~~~~~i~y~~~~~~~~~~~~~~~~~~--~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~ 373 (578)
+..+...+.++|++..+......|+++.+. ..++..+.+..++++...++.+..+++.+++.++.+++.+|++|+|||
T Consensus 218 i~~~~~~i~i~Yil~~~~~~~~~p~~~~~~~~~~~~~~~~~~~g~~~~~~ii~~~i~~~~~~~~n~~~~~~sR~l~a~ar 297 (446)
T PRK10197 218 TNSVIWRISIFYLCSIFVVVALIPWNMPGLKAVGSYRSVLELLNIPHAKLIMDCVILLSVTSCLNSALYTASRMLYSLSR 297 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHheecCcCcccccccCcHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 999999999999999999999988876443 346777788888888888999999999999999999999999999999
Q ss_pred cCCCchhhhhhcCCCCcchhHHHHHHHHHHHHHhhc------CHHHHHHHHHHHHHHHHHHHHHHHhhheecCCCCCCCc
Q 008094 374 DGLLPSIFAKVHPKRHTPVHSQVWVGIVAGILAGLF------NVRVLSHILSVGTLTGYSVVSACVIALRWKDRTSRNDS 447 (578)
Q Consensus 374 d~~lP~~~~~~~~r~~~P~~ail~~~~i~~i~~~~~------~~~~l~~~~~~~~l~~y~~~~~~~~~~r~~~~~~~~~~ 447 (578)
||.+|++|+|+| |+++|++|++++.+++.+..+.. .++.+.++.+...++.|.+.+++.+++||+.++.+
T Consensus 298 dg~lP~~~~~~~-~~~~P~~Ail~~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~li~y~~~~~a~i~lr~~~~~~~--- 373 (446)
T PRK10197 298 RGDAPAVMGKIN-RSKTPYVAVLLSTGAAFLTVVVNYYAPAKVFKFLIDSSGAIALLVYLVIAVSQLRMRKILRAEG--- 373 (446)
T ss_pred CCCcCHHHHhhC-cCCCcHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---
Confidence 999999999999 88999999999887765543331 35778888889999999999999999987633211
Q ss_pred cccchhhhhhHHHHHHHHHhhhhcchhhccchhHHHHHHHHHHHHHHHHHHHhccCCCCCCCccccccchHHHHHHHHHH
Q 008094 448 SRLTSAWRQGVICLIIIACCGFGAGLFYRINASYILLIVAVVIAVLASAMLCLRHGYSDPPGFSCPGVPLLPAVSIFFNL 527 (578)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~ 527 (578)
+++++|.|..|+.+.++++.+.
T Consensus 374 ----------------------------------------------------------~~~~~~~~~~p~~~~~~i~~~~ 395 (446)
T PRK10197 374 ----------------------------------------------------------SEIRLRMWLYPWLTWLVIGFIT 395 (446)
T ss_pred ----------------------------------------------------------CCCCCcCCCcchHHHHHHHHHH
Confidence 1456899999999999988876
Q ss_pred HHhhc--C--CHHHHHHHHHHHHHHHHHHh-hhcccccCC
Q 008094 528 FLFAQ--L--HYEAWWRFVILSFISIGLYA-FYGQYHADP 562 (578)
Q Consensus 528 ~~~~~--~--~~~~~~~~~~~~~~g~~~y~-~~~~~~~~~ 562 (578)
+.+.. . +........+++++++..|+ ..+|.+|++
T Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (446)
T PRK10197 396 FVLVVMLFRPAQQLEVISTGLLAIGIICTVPIMARWKKLV 435 (446)
T ss_pred HHHHHHHHCcchHHHHHHHHHHHHHHHhhhHHHhhhcccc
Confidence 65432 1 23333346677788888888 444444433
|
|
| >KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-51 Score=410.97 Aligned_cols=423 Identities=26% Similarity=0.432 Sum_probs=359.0
Q ss_pred CCCCcccccChhHHHHHHhhhhhhhhHHHHHHHHHhhhCc-H-HHHHHHHHHHHHHHHHHHHHHHhhcCCCCccchhhhh
Q 008094 53 DGEGLLRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGP-G-VTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYA 130 (578)
Q Consensus 53 ~~~~l~r~l~~~~~~~~~i~~~ig~g~~~~~~~~~~~~G~-~-~~~~~ii~~l~~~~~a~~~ael~~~~P~~~GG~y~~~ 130 (578)
++.++||+++.++.+.+.++.++|+|+|..+..+...+|+ + ++..|+++++++++.++||+||++.+|+ +||.|.|.
T Consensus 6 ~~~~~~kkigll~~v~livg~iIGsGIFvsp~~Vl~~~gsvg~sL~iWv~~gi~s~~galcyaELGT~ipk-sGgd~ayi 84 (479)
T KOG1287|consen 6 EEVQLKKKIGLLSGVSLIVGNIIGSGIFVSPKGVLANTGSVGLSLIIWVFCGIISIIGALCYAELGTSIPK-SGGDYAYI 84 (479)
T ss_pred ccccccceeeeecceeEEEEeeEecccccCcHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHhccccC-CCcchhhH
Confidence 4556889999999999999999999999999999999998 4 8889999999999999999999999999 99999999
Q ss_pred HHHhchhhHHHHHHHHHHHH-HHHHHHHHHHHHHH-HHHHHhhcccccCCCCccccCCCccccccchhhhHHHHHHHHHH
Q 008094 131 YTAFNELTAFLVFAQLMLDY-HIGAASIARSLASY-VVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALL 208 (578)
Q Consensus 131 ~~~~g~~~g~~~g~~~~l~~-~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (578)
.+++||..||...|..++.. ....+..+..+++| +... +| ....+ .....+++.+++++.
T Consensus 85 ~~afg~~~aF~~~wvs~l~~~p~~~Ai~altF~~Y~l~p~---fp--~c~~p-------------~~~~~lla~~~l~~l 146 (479)
T KOG1287|consen 85 SEAFGPFPAFLFLWVSLLIIVPTSAAIIALTFATYLLKPF---FP--LCDVP-------------RVASKLLAAALLVLL 146 (479)
T ss_pred HHHhccchhHHHHHHHHHHHhhhHHHHHHHHHHHHhhccc---CC--CCCCc-------------hHHHHHHHHHHHHHH
Confidence 99999999999999887764 44558889999999 3322 22 11222 224557899999999
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhhccc---ccCCCCC--C--CCCChHHHHHHHHHHHhhccchHHHhhh
Q 008094 209 TIVLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEV---DVSNWSP--F--APNGFKEILTGATVVFFAYVGFDAVANS 281 (578)
Q Consensus 209 ~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~~~~~--~--~~~g~~~~~~~~~~~~~~~~G~e~~~~~ 281 (578)
+++|+..+|...++|.+++..|++.+.++++.|+... +.+|+.. + ...+...+..++....|+|.|||.....
T Consensus 147 t~~n~~~V~~a~~vq~~ft~~Kl~al~lIii~G~~~~~~g~~~~~~~~~f~g~~~~~g~i~lafysglfa~~GWd~lN~v 226 (479)
T KOG1287|consen 147 TLINSFSVKWATRVQIVFTIAKLLALLLIIITGLYLLFWGSTQNFENSEFEGSDTDVGNIALAFYSGLFAFSGWDYLNYV 226 (479)
T ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhchheeEecccccccccccccCcCchHHHHHHHHHhhhcccCchhhccc
Confidence 9999999999999999999999999999999887642 2233221 1 1223446778999999999999999999
Q ss_pred hhhhcCCCCChhHHHHHHHHHHHHHHHHHHHHHhccccccccCCCChHHHHHHHc-ChhHHHHHHHHHHHHHHHHHHHHH
Q 008094 282 AEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLDEDAPLSDAFASR-GLKYVSVLISFGAVAGLTTTLLVG 360 (578)
Q Consensus 282 ~~E~k~P~k~ip~a~~~s~~~~~i~y~~~~~~~~~~~~~~~~~~~~p~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 360 (578)
+||+|||+||+|||+..++.+++++|++++++...+++.|++.+++.++.-+.+. ++.+. +++.+.+.++++++.|+.
T Consensus 227 teEiknP~ktLP~Ai~isi~lvt~iYil~NvAy~~vls~~e~l~S~aVav~Fa~~~~G~~~-~~ip~~ValS~~G~~n~~ 305 (479)
T KOG1287|consen 227 TEEIKNPRRTLPRAILISIPLVTVIYVLVNVAYFTVLSPDEILSSDAVAVTFADRILGVFA-WAIPFSVALSLIGSLNSV 305 (479)
T ss_pred hHhhcCccccchHHHHHhhHHHHHHHHHhHhheeEecCHHHhcccchHHHHHHHHhccchH-HHHHHHHHHHhhhhhhhH
Confidence 9999999999999999999999999999999999999888876555555555554 55555 899999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCchhhhhhcCCCCcchhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHhhheecC
Q 008094 361 LYVQSRLYLGLGRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGILAGLFNVRVLSHILSVGTLTGYSVVSACVIALRWKD 440 (578)
Q Consensus 361 ~~~~sR~l~~~a~d~~lP~~~~~~~~r~~~P~~ail~~~~i~~i~~~~~~~~~l~~~~~~~~l~~y~~~~~~~~~~r~~~ 440 (578)
++++||+++++||+|+||+.|++.|+|..+|..++++....+.+..+..+++.+++..++...+.+.+...+++++|+||
T Consensus 306 ifs~SR~~~~~areG~LP~~~s~i~~~~~TP~~allf~~~~~i~~~~~~d~~~LIny~sf~~~l~~~l~~~gll~lR~k~ 385 (479)
T KOG1287|consen 306 IFSSSRLFYAGAREGHLPAFFSMISVRRFTPRPALLFSGLLSIVLSLIGDFDQLINYVSFAYWLFRGLSMAGLLWLRWKH 385 (479)
T ss_pred HHHHHHHHHHHHHccCccHHHHhhcCCCCCChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 99999999999999999999999998888999999999999888888889999999999999999999999999999999
Q ss_pred CCCCCCccccchhhhhhHHHHHHHHHhhhhcchhhccchhHHHHHHHHHHHHHHHHHHHhccCCCCCCCccccccchHHH
Q 008094 441 RTSRNDSSRLTSAWRQGVICLIIIACCGFGAGLFYRINASYILLIVAVVIAVLASAMLCLRHGYSDPPGFSCPGVPLLPA 520 (578)
Q Consensus 441 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~p~~~~ 520 (578)
|+. +|++|+|. +.|.
T Consensus 386 p~~---------------------------------------------------------------~rPiKvpl--~~p~ 400 (479)
T KOG1287|consen 386 PPL---------------------------------------------------------------PRPIKVPL--FIPI 400 (479)
T ss_pred CCC---------------------------------------------------------------CCCEeeee--ehHH
Confidence 986 55688887 6777
Q ss_pred HHHHHHHHHhhcC---C-HHHHHHHHHHHHHHHHHHhhhccccc
Q 008094 521 VSIFFNLFLFAQL---H-YEAWWRFVILSFISIGLYAFYGQYHA 560 (578)
Q Consensus 521 ~~~~~~~~~~~~~---~-~~~~~~~~~~~~~g~~~y~~~~~~~~ 560 (578)
+.++.|+++.... + +....+..+.++.|+.+|+.+.++++
T Consensus 401 ~~~~~~i~lvvip~~~~~~~~~~ig~~i~l~G~~~Y~~~i~~~~ 444 (479)
T KOG1287|consen 401 LFLLICIFLVVIPIISDFPVETLIGIGIILSGVPFYFLFIHWKK 444 (479)
T ss_pred HHHHHHHHHhheeeeecCCccchhHHHHHHHhhhhheEEEEecC
Confidence 7777777764421 2 22356777788999999997776655
|
|
| >PRK11021 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-49 Score=410.90 Aligned_cols=398 Identities=20% Similarity=0.265 Sum_probs=318.4
Q ss_pred cChhHHHHHHhhhhhhhhHHHHHHHHHhhhCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccchhhhhHHHhchhhHH
Q 008094 61 LGLFELVLIGVGASVGAGIFVVTGTVARDAGPGVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNELTAF 140 (578)
Q Consensus 61 l~~~~~~~~~i~~~ig~g~~~~~~~~~~~~G~~~~~~~ii~~l~~~~~a~~~ael~~~~P~~~GG~y~~~~~~~g~~~g~ 140 (578)
+|+++.+++.+|.++|+|+|..++.+.+.+||..+++|++++++.++.+++++|+++++|+ +||.|.|+++.+||..||
T Consensus 1 ~g~~~~~~l~~g~~IGsGif~~~g~~~~~aG~~~~~~~~i~~~~~~~~al~~aEl~s~~P~-aGG~y~y~~~~~G~~~gf 79 (410)
T PRK11021 1 LGLWQGIGLLSTSLLGTGVFAVPALAALVAGNNSLWAWPLLILLIFPIAIVFARLGRHFPH-AGGPAHFVGMAFGPRLGR 79 (410)
T ss_pred CcHHHHHHHHHHHHHhhHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CCCHHHhHHHHhCchhHH
Confidence 5789999999999999999999999999999999999999999999999999999999999 999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCccccCCCccccccchhhhHHHHHHHHHHHHHHHhhhHHHH
Q 008094 141 LVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGVGESS 220 (578)
Q Consensus 141 ~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~ 220 (578)
.+||.+++.+....+........++...+ |. ..+ ....+..+++++++.+|++|+|..+
T Consensus 80 ~~gw~~~~~~~~~~~~~~~~~~~~~~~~~---~~-----~~~-------------~~~~~~~~~~~~~~~ln~~Gv~~~~ 138 (410)
T PRK11021 80 VTGWLFLSVIPVGLPAALQIAAGFGQALF---GW-----SSW-------------QLLLAELLTLALLWLLNLRGASSSA 138 (410)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHc---CC-----CCc-------------hHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 99999998876665555555555655443 21 011 1124566777888899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcccccCC--CCCCCCCChHHHHHHHHHHHhhccchHHHhhhhhhhcCCCCChhHHHHH
Q 008094 221 VLNSCMTVVKVIIVIVVIFAGAFEVDVSN--WSPFAPNGFKEILTGATVVFFAYVGFDAVANSAEESKKPQRDLPIGILG 298 (578)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~~g~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~P~k~ip~a~~~ 298 (578)
|+|.+...+.+..++.+...+ ..+..+ +.++.+.++.++..++...+|+|.|+|.+++++||+|||+||+|||++.
T Consensus 139 ~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~k~iPrAi~~ 216 (410)
T PRK11021 139 NLQTVIALLIVALVVAIWWAG--DIKPADIPFPAPGSIEWSGLFAALGVMFWCFVGIEAFAHLASEFKNPERDFPRALMI 216 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHc--CCchhcCCCCCCCCccHHHHHHHHHHHHHHHhcHHHHHhhHHhccCccccccHHHHH
Confidence 999988765544333322222 112222 2333456788899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcccccccc-CCCChHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 008094 299 SLLICAALYVGVSLVLTGMVPYKFL-DEDAPLSDAFASRGLKYVSVLISFGAVAGLTTTLLVGLYVQSRLYLGLGRDGLL 377 (578)
Q Consensus 299 s~~~~~i~y~~~~~~~~~~~~~~~~-~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~~l 377 (578)
+..++.++|++..+......+.++. .++.|..+++++..++....++.+..+++.+++.++.+.+.+|++++|||||.+
T Consensus 217 ~~~~~~~lYil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~ii~i~~~~s~~~~~~~~~~~~sR~l~a~ardg~l 296 (410)
T PRK11021 217 GLLLAGLVYWACTVVVLHFPAYGDKQAAAASLPGIFVQLFGGYALWVICVIGYLACFASVNIYTQSFARLVWSQAREGRP 296 (410)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCcchhhccccHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCc
Confidence 9999999999999887766654433 345677777777656666667777888999999999999999999999999999
Q ss_pred chhhhhhcCCCCcchhHHHHHHHHHHHHHhh-----cCHHHHHHHHHHHHHHHHHHHHHHHhhheecCCCCCCCccccch
Q 008094 378 PSIFAKVHPKRHTPVHSQVWVGIVAGILAGL-----FNVRVLSHILSVGTLTGYSVVSACVIALRWKDRTSRNDSSRLTS 452 (578)
Q Consensus 378 P~~~~~~~~r~~~P~~ail~~~~i~~i~~~~-----~~~~~l~~~~~~~~l~~y~~~~~~~~~~r~~~~~~~~~~~~~~~ 452 (578)
|++|+|+| |+++|++|++++.+++.+..++ .+++.+.++.+...++.|.+..++.+++++++.
T Consensus 297 P~~~~k~~-~~~tP~~ail~~~~i~~~~~l~~~~~~~~~~~l~~~~~~~~li~y~~~~~a~~~l~~~~~----------- 364 (410)
T PRK11021 297 PSYLARLS-ARGVPVNALNAVLGCCAVSILLIYALGLNLEALIAYANGIFVLIYLLCMLAACKLLKGRY----------- 364 (410)
T ss_pred cHHHHhhc-cCCCcHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHhccch-----------
Confidence 99999999 6799999999988776654433 367788888888889999999999988875420
Q ss_pred hhhhhHHHHHHHHHhhhhcchhhccchhHHHHHHHHHHHHHHHHHHHhccCCCCCCCccccccchHHHHHHHHHHHHhhc
Q 008094 453 AWRQGVICLIIIACCGFGAGLFYRINASYILLIVAVVIAVLASAMLCLRHGYSDPPGFSCPGVPLLPAVSIFFNLFLFAQ 532 (578)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~ 532 (578)
|.+|+++++.|++++..
T Consensus 365 ---------------------------------------------------------------~~~~~~~~~~~~~~~~~ 381 (410)
T PRK11021 365 ---------------------------------------------------------------RPLAVLGCLLCLLLLVM 381 (410)
T ss_pred ---------------------------------------------------------------HHHHHHHHHHHHHHHHH
Confidence 36889999999999888
Q ss_pred CCHHHHHHHHHHHHHHHHHHhhhccccc
Q 008094 533 LHYEAWWRFVILSFISIGLYAFYGQYHA 560 (578)
Q Consensus 533 ~~~~~~~~~~~~~~~g~~~y~~~~~~~~ 560 (578)
.++..+... .+..+++++.+++||+
T Consensus 382 ~~~~~~~~~---~~~~~~~~~~~~~~~~ 406 (410)
T PRK11021 382 LGWKMLYAL---IMLALLWLFLPKRKTH 406 (410)
T ss_pred hhHHHHHHH---HHHHHHHHHHHHhhhh
Confidence 887765443 3345566665665555
|
|
| >TIGR03810 arg_ornith_anti arginine/ornithine antiporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-48 Score=408.96 Aligned_cols=415 Identities=21% Similarity=0.314 Sum_probs=336.5
Q ss_pred cccChhHHHHHHhhhhhhhhHHHHHHHHHhhhCcH-HHHHHHHHHHHHHHHHHHHHHHhhcCCCCc-cchhhhhHHHhch
Q 008094 59 RRLGLFELVLIGVGASVGAGIFVVTGTVARDAGPG-VTISFLLAGAASVLNALCYAELASRFPAVV-GGAYLYAYTAFNE 136 (578)
Q Consensus 59 r~l~~~~~~~~~i~~~ig~g~~~~~~~~~~~~G~~-~~~~~ii~~l~~~~~a~~~ael~~~~P~~~-GG~y~~~~~~~g~ 136 (578)
|+++.+++++++++.+||+|+|..++...+.+||. .+++|++++++.++.+++++|+++++|+ + ||.|+|+++.+||
T Consensus 1 ~~lgl~~~~~l~vg~~IGsGif~~~~~~~~~ag~~~~l~~w~i~~~~~~~~al~~aeL~s~~P~-~gGG~y~y~~~~fG~ 79 (468)
T TIGR03810 1 KKLGLGALTALVVGSMIGSGIFSLPSDMAAGAAAGAVLIGWVITGVGMLALAFSFQNLANKKPE-LDGGVYSYAKAGFGP 79 (468)
T ss_pred CCCCHHHHHHHHHHhHHhhHHHHhHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC-CCCChhhhHHhHcCc
Confidence 68999999999999999999999999999889985 8899999999999999999999999998 6 5999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCccccCCCccccccchhhhHHHHHHHHHHHHHHHhhh
Q 008094 137 LTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGV 216 (578)
Q Consensus 137 ~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~ 216 (578)
..||.+||.+|+++.......+.....++..++ |.+..+. +....+.+.++++.+..+|++|+
T Consensus 80 ~~gf~~gw~~w~~~~~~~~~~~~~~~~~~~~~~---p~~~~~~--------------~~~~~~~~~~~~~~~~~ln~~Gv 142 (468)
T TIGR03810 80 FMGFISAWGYWLSAWLGNVAYATLLFSTLGYFF---PIFGGGN--------------NPPSIIGASVLLWCVHFLVLRGV 142 (468)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---ccccCCC--------------cHHHHHHHHHHHHHHHHHHHhCH
Confidence 999999999999988776666665556655432 3211110 01112355666777889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhcccccCCC-----CCC-----CCCChHHHHHHHHHHHhhccchHHHhhhhhhhc
Q 008094 217 GESSVLNSCMTVVKVIIVIVVIFAGAFEVDVSNW-----SPF-----APNGFKEILTGATVVFFAYVGFDAVANSAEESK 286 (578)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-----~~~-----~~~g~~~~~~~~~~~~~~~~G~e~~~~~~~E~k 286 (578)
|..+++|.+.+.+++++++++++.+....+.+++ .+. .++.+.++..++...+|+|.|+|.+++++||.|
T Consensus 143 ~~~~~i~~i~~~~ki~~l~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~e~k 222 (468)
T TIGR03810 143 EGAAFINTITTIAKLVPLFVFIVIGIFAFKGDTFTNDFWGNANGGFSLGSVMTQVKNMMLVTVWVFIGIEGASMLSARAE 222 (468)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcHhhcCccccccccccCccccHHHHHHHHHHHHHHHHHhHhHHhhhHhhcc
Confidence 9999999999999998888877766543222221 111 112244666788899999999999999999999
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHHHHHhccccccccC-CCCh-HHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008094 287 KPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLD-EDAP-LSDAFASRGLKYVSVLISFGAVAGLTTTLLVGLYVQ 364 (578)
Q Consensus 287 ~P~k~ip~a~~~s~~~~~i~y~~~~~~~~~~~~~~~~~-~~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (578)
| |||+|||+..+...+.++|++..+...+..|.+++. .++| ..+++++..+++...++.+.++++.+++.++.+.+.
T Consensus 223 ~-~k~ip~ai~~~~~~v~~lY~l~~~~~~g~~~~~~l~~~~~p~~~~~~~~~~g~~~~~~i~~~~~is~~~~~~~~~~~~ 301 (468)
T TIGR03810 223 K-RSDVGKATVIGLIGVLAIYVLVSVLSYGIMTQAQLAGLKNPSMAYVLEHMVGTWGAVLINIGLIISILGAWLSWTLLP 301 (468)
T ss_pred C-cccchHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHhcCCCchHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8 799999999999999999999999999988877664 3445 677888888888889999999999999999999999
Q ss_pred HHHHHHHhhcCCCchhhhhhcCCCCcchhHHHHHHHHHHHHHhh--c---CHHHHHHHHHHHHHHHHHHHHHHHhhheec
Q 008094 365 SRLYLGLGRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGILAGL--F---NVRVLSHILSVGTLTGYSVVSACVIALRWK 439 (578)
Q Consensus 365 sR~l~~~a~d~~lP~~~~~~~~r~~~P~~ail~~~~i~~i~~~~--~---~~~~l~~~~~~~~l~~y~~~~~~~~~~r~~ 439 (578)
+|++|+|||||.+|++|+|+| |+++|++|++++.+++.++... . .++.+.++.+...++.|.+.+++.+++|+|
T Consensus 302 sR~~~a~ardg~lP~~f~k~~-~~~tP~~al~~~~~i~~~~~l~~~~~~~~~~~l~~~~~~~~li~y~~~~~~~~~l~~~ 380 (468)
T TIGR03810 302 AEIPLLMAKDKLMPKYFGKEN-ANGAPTNALWLTNGLIQIFLLTTLFSEQAYNFAISLATSAILVPYLWSAAYQVKLSWR 380 (468)
T ss_pred HHHHHHHHhCCCccHHHHhhC-CCCCCHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999 7799999999988887554433 2 357788888889999999999999999876
Q ss_pred CCCCCCCccccchhhhhhHHHHHHHHHhhhhcchhhccchhHHHHHHHHHHHHHHHHHHHhccCCCCCCCccccccchHH
Q 008094 440 DRTSRNDSSRLTSAWRQGVICLIIIACCGFGAGLFYRINASYILLIVAVVIAVLASAMLCLRHGYSDPPGFSCPGVPLLP 519 (578)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~p~~~ 519 (578)
+++. + +++.+ ++++
T Consensus 381 ~~~~-~-------------------------------------------------------------~~~~~----~~~~ 394 (468)
T TIGR03810 381 GGQE-R-------------------------------------------------------------GRRKQ----LLIG 394 (468)
T ss_pred cCCc-c-------------------------------------------------------------chhhh----HHHH
Confidence 5311 0 01111 4778
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHhhhcccc
Q 008094 520 AVSIFFNLFLFAQLHYEAWWRFVILSFISIGLYAFYGQYH 559 (578)
Q Consensus 520 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~~~~~~ 559 (578)
.++.+.+++......++......+..++|+.+|++++++|
T Consensus 395 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~~~~~~ 434 (468)
T TIGR03810 395 LVALLYAVWLIYAAGLKYLLLSAILYAPGIYFYARARKEK 434 (468)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 8888888888888888888888888999999997544433
|
Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2. |
| >TIGR00930 2a30 K-Cl cotransporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-48 Score=433.83 Aligned_cols=426 Identities=17% Similarity=0.221 Sum_probs=343.4
Q ss_pred CcccccChhHHHHHH-hhhhhhhhHHHHHHHHHhhhCcH-HHHHHHHHHHHHHHHHHHHHHHhhc-CCCCccchhhhhHH
Q 008094 56 GLLRRLGLFELVLIG-VGASVGAGIFVVTGTVARDAGPG-VTISFLLAGAASVLNALCYAELASR-FPAVVGGAYLYAYT 132 (578)
Q Consensus 56 ~l~r~l~~~~~~~~~-i~~~ig~g~~~~~~~~~~~~G~~-~~~~~ii~~l~~~~~a~~~ael~~~-~P~~~GG~y~~~~~ 132 (578)
+-+|++|+++.+++. +++++|.|+|..++.+.+.+|.+ +++.|+++++++++++++|+|++++ +|+ +||.|+|++|
T Consensus 73 ~~~~~lG~~~GV~~~~~~nIiGv~iFlr~~~Vvg~aG~~~sll~~~la~~vtlltaLS~seiaTng~p~-aGG~Y~yisr 151 (953)
T TIGR00930 73 AGAVKFGWVMGVLVPCLLNIWGVILFLRLSWIVGQAGIGLSLLIILLCCCVTTITGLSMSAIATNGVVK-GGGAYYLISR 151 (953)
T ss_pred CCCcccceeEeeeHhhhHhHheeeeeeeHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-ccHHHHHHHH
Confidence 446789999998888 99999999999999999999984 8899999999999999999999998 998 9999999999
Q ss_pred HhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCccccCCCccccccchhhhHHHHHHHHHHHHHH
Q 008094 133 AFNELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVL 212 (578)
Q Consensus 133 ~~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 212 (578)
++||.+|+.+||.+++++.+..+.++.++++|+..++...+. .. .. .......+++.+++++++++|
T Consensus 152 alGp~~Gf~iG~~~~la~~va~A~~~~Gf~eyl~~lf~~~~~---~~--~~--------~~~~~~~iia~i~l~ll~~In 218 (953)
T TIGR00930 152 SLGPEFGGSIGLIFAFANAVAVAMYVVGFAETVLDLLRENGS---KI--MV--------DPINDIRIYGTVTVVVLLGIS 218 (953)
T ss_pred HhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc---cc--cc--------CccccchHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999887642110 00 00 001123467888899999999
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHhhhhcccc-----------c----CCCCCCCCCChHHHHHHHHHHHhhccchHH
Q 008094 213 CWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEVD-----------V----SNWSPFAPNGFKEILTGATVVFFAYVGFDA 277 (578)
Q Consensus 213 ~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-----------~----~~~~~~~~~g~~~~~~~~~~~~~~~~G~e~ 277 (578)
++|+|..+|+|.++++++++.++.+++.++.... . .|+.+..+.+..++...+...+++|.|+|+
T Consensus 219 ~~Gvk~~ak~q~vl~vi~ll~ll~~iig~~~~~~~~~~~g~~~~~~~~f~~n~~p~~~~~~~~f~~~~ai~F~A~tGi~a 298 (953)
T TIGR00930 219 FAGMEWENKAQVLFLVIVLLSILNIFVGTIIPAFDKPAKGFFGLGNEIFSENFIPGIPGPEGGFFSLFGIFFPSVTGILA 298 (953)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHheeeecCCCCCccceeeccchhhhhccCCCCCCcccHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998888877765543110 0 011111123333466677778889999999
Q ss_pred HhhhhhhhcCCCCChhHHHHHHHHHHHHHHHHHHHHHhccccccccCC-CChH------------------HHH----HH
Q 008094 278 VANSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLDE-DAPL------------------SDA----FA 334 (578)
Q Consensus 278 ~~~~~~E~k~P~k~ip~a~~~s~~~~~i~y~~~~~~~~~~~~~~~~~~-~~p~------------------~~~----~~ 334 (578)
.++++||+|||+|++|||++.++.+++++|++..++...+.+.+.... ++.. ... +.
T Consensus 299 gan~sgElKnP~r~IPratl~ai~i~~vlYllv~~~~~~~~~~d~~~~~~~~l~~~~~g~~~f~~~~~~p~~~gL~~~~~ 378 (953)
T TIGR00930 299 GANISGDLKDPQKAIPKGTLLAILTTTVVYLGSVVLFGACVVRDATGDKNDTLVTNCTSAACFSECAHNTCSYGLMNNLQ 378 (953)
T ss_pred HHHHHHhccChhhhhHHHHHHHHHHHHHHHHHHHHHHHccccHhhhcccchhhhcccccchhhhhhcccchhhhhcchHH
Confidence 999999999999999999999999999999999988887776543321 1111 001 11
Q ss_pred H-cChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCc--hhhhhhcCCCCcchhHHHHHHHHHHHHHhhcCH
Q 008094 335 S-RGLKYVSVLISFGAVAGLTTTLLVGLYVQSRLYLGLGRDGLLP--SIFAKVHPKRHTPVHSQVWVGIVAGILAGLFNV 411 (578)
Q Consensus 335 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP--~~~~~~~~r~~~P~~ail~~~~i~~i~~~~~~~ 411 (578)
. ........++.++++++++++.++++++++|++++|||||.+| ++|+|+|+|+++|++|++++++++.++.++.++
T Consensus 379 ~~~~~~~~~~lI~ig~~~stlss~la~l~~asRvl~AmArDg~lP~l~~fakv~~k~~tP~~Alllt~iIa~l~ili~~l 458 (953)
T TIGR00930 379 VMSLVSPFPPLITAGIFSATLSSALASLVSAPRLFQALCKDNIYPFLQFFGKGYGKNGEPLRAYLLTAFIAEGFILIAEL 458 (953)
T ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhhcccCCCCCCcHHHHHHHHHHHHHHHHHHhH
Confidence 1 1112245678889999999999999999999999999999999 899999999999999999999999888888899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhheecCCCCCCCccccchhhhhhHHHHHHHHHhhhhcchhhccchhHHHHHHHHHHH
Q 008094 412 RVLSHILSVGTLTGYSVVSACVIALRWKDRTSRNDSSRLTSAWRQGVICLIIIACCGFGAGLFYRINASYILLIVAVVIA 491 (578)
Q Consensus 412 ~~l~~~~~~~~l~~y~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 491 (578)
+.+..+.+.+++++|.+.+++.+++|+++++.+||.
T Consensus 459 ~~ia~lis~~fLl~Y~lvnla~~~l~~~~~p~~RP~-------------------------------------------- 494 (953)
T TIGR00930 459 NTIAPIISNFFLASYALINFSCFHASLLRSPGWRPR-------------------------------------------- 494 (953)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCc--------------------------------------------
Confidence 999999999999999999999999987776555543
Q ss_pred HHHHHHHHhccCCCCCCCccccccchHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHhhhcccccC
Q 008094 492 VLASAMLCLRHGYSDPPGFSCPGVPLLPAVSIFFNLFLFAQLHYEAWWRFVILSFISIGLYAFYGQYHAD 561 (578)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~~~~~~~~ 561 (578)
||. ..|++|+++.+.|++++...+ |...++.+++++++|+++.+++.+
T Consensus 495 ------------------fk~-~~~~~sllG~l~c~~lmf~i~---w~~ali~~~i~~~ly~~~~~~~~~ 542 (953)
T TIGR00930 495 ------------------FKY-YHWWLSLLGASLCCAIMFLIS---WWAALVAMVIALFLYKYVTYKKPD 542 (953)
T ss_pred ------------------ccc-chHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhhccCCC
Confidence 333 346899999999999887765 566677778888888866655443
|
|
| >TIGR00907 2A0304 amino acid permease (GABA permease) | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-47 Score=405.39 Aligned_cols=375 Identities=19% Similarity=0.248 Sum_probs=292.2
Q ss_pred CCCCCCcccccChhHHHHHHhhhh-hhhhHHHHHHHHHhhhCc-HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccchhh
Q 008094 51 TNDGEGLLRRLGLFELVLIGVGAS-VGAGIFVVTGTVARDAGP-GVTISFLLAGAASVLNALCYAELASRFPAVVGGAYL 128 (578)
Q Consensus 51 ~~~~~~l~r~l~~~~~~~~~i~~~-ig~g~~~~~~~~~~~~G~-~~~~~~ii~~l~~~~~a~~~ael~~~~P~~~GG~y~ 128 (578)
..+++++||+++.+++++++++.+ ...|++...+.....+|| +.+++|++++++.++.+++++||++++|+ +||.|+
T Consensus 4 ~g~~~~l~r~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~Gp~~~i~~~~i~gi~~l~~~~~~aEl~s~~P~-~Gg~y~ 82 (482)
T TIGR00907 4 LGYKPELKREFSLWSIFGFAFSISNSWTGISTTYNYGLSSGGAMSIVWGWIIAGAGSICIALSLAELSSAYPT-SGGQYF 82 (482)
T ss_pred cCCcceeecccchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCccchhHHHHHHHHHHHHHHHHHHHHHhhCCC-CccHHH
Confidence 457788999999999999999954 237888888888888999 68999999999999999999999999999 999999
Q ss_pred hhHHHhc----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCccccCCCccccccchhhhHHHHHH
Q 008094 129 YAYTAFN----ELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPIL 204 (578)
Q Consensus 129 ~~~~~~g----~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (578)
|+++.+| +..||++||.+++++....++.+...++++........ ..+.+. ++.....++..++
T Consensus 83 ~~~~~~g~~~g~~~~f~~gW~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~~~~--------~~~~~~~~i~~~~ 150 (482)
T TIGR00907 83 WSAKLAPPRQMPFASWMTGWFNLAGQVAGTASTDLSVAQLILGIVSLTT----PGREYI--------PTRWHIFGIMIGI 150 (482)
T ss_pred HHHHhcccccccceeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----CCCCcc--------ccCchhhhhHHHH
Confidence 9999976 57799999999999999988888888888877654211 000011 1111223466777
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhhcccc---------cCCCC----CCCCCChHHHHHHHHHHHhh
Q 008094 205 LALLTIVLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEVD---------VSNWS----PFAPNGFKEILTGATVVFFA 271 (578)
Q Consensus 205 ~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---------~~~~~----~~~~~g~~~~~~~~~~~~~~ 271 (578)
+++++.+|++|+|..++++++..+++++.++++.+......+ .+++. ++.+.++ ++..++..+.|+
T Consensus 151 ~~~~~~in~~g~k~~~~~~~~~~~~~i~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~g~-~~~~~~~~~~fs 229 (482)
T TIGR00907 151 HLIHALINSLPTKWLPRITSSAAYWSLLGFLTICITLLACKSPKFNDGKFVFTNFNNSTGGWKPGGF-AFLLGLLNPAWS 229 (482)
T ss_pred HHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCChhhhheeeeCCCCCcCCCch-hhhhhhhhhHHH
Confidence 888999999999999999999888887776654443322111 01111 1223444 566777788999
Q ss_pred ccchHHHhhhhhhhcCCCCChhHHHHHHHHHHHHHHHHHHHHHhcccc-cccc-C--CCChHHHHHHHc-ChhHHHHHHH
Q 008094 272 YVGFDAVANSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVP-YKFL-D--EDAPLSDAFASR-GLKYVSVLIS 346 (578)
Q Consensus 272 ~~G~e~~~~~~~E~k~P~k~ip~a~~~s~~~~~i~y~~~~~~~~~~~~-~~~~-~--~~~p~~~~~~~~-~~~~~~~~~~ 346 (578)
|.|+|.+++++||+||||||+|||++.++.+..+++++..+......+ .+++ + .++|+.+.+.+. +.++...++.
T Consensus 230 f~G~e~~~~~a~E~knP~r~iP~Ai~~s~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~ 309 (482)
T TIGR00907 230 MTGYDGTAHMAEEIENPEVVGPRAIIGAVAIGIVTGFCFNIVLFFSMGDIDSLISSTTGQPIAQIFYNALGNKAGAIFLL 309 (482)
T ss_pred hcCcchhhHHHHhcCChhhhcCHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHhcCCCCChHHHHHHHHhCCchHHHHHH
Confidence 999999999999999999999999999998877665555544444433 2222 2 225888888775 5556667777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCc--hhhhhhcCCCCcchhHHHHHHHHHHHHHhhc-----CHHHHHHHHH
Q 008094 347 FGAVAGLTTTLLVGLYVQSRLYLGLGRDGLLP--SIFAKVHPKRHTPVHSQVWVGIVAGILAGLF-----NVRVLSHILS 419 (578)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP--~~~~~~~~r~~~P~~ail~~~~i~~i~~~~~-----~~~~l~~~~~ 419 (578)
+..+++.+++.++.+++.||++++|||||.+| ++|+|+|||+++|++|++++.+++.++.+.. .++.+.++.+
T Consensus 310 ~~~~~~~~~~~~~~~~~~sR~l~a~ardg~lP~~~~f~~v~~~~~~P~~ai~~~~~i~~~~~~~~~~~~~~f~~l~~~~~ 389 (482)
T TIGR00907 310 CLILVTSFFCAITCMTANSRMIYAFSRDGGLPFSPLWSRVNPRTQVPLNAVWLSAVWIILIGLLGLGSSTAFQAIFSVCT 389 (482)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCchHhhceeCCCCCCcHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 88888899999999999999999999999999 9999999988999999999998877655443 3577888888
Q ss_pred HHHHHHHHHHHHHHhhheec
Q 008094 420 VGTLTGYSVVSACVIALRWK 439 (578)
Q Consensus 420 ~~~l~~y~~~~~~~~~~r~~ 439 (578)
.+.++.|.++..+.+++|++
T Consensus 390 ~~~~i~y~~~~~~~l~~~~~ 409 (482)
T TIGR00907 390 VALDVSYVIPIICKLAKGRN 409 (482)
T ss_pred HHHHHHHHHHHHHHHHhcCC
Confidence 88899999988877654443
|
|
| >KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-49 Score=395.06 Aligned_cols=398 Identities=21% Similarity=0.257 Sum_probs=321.9
Q ss_pred CCCCcCccCCCCCCcccccChhHHHHHHhhhh-hhhhHHHHHHHHHhhhCc-HHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 008094 43 TLTAPSVRTNDGEGLLRRLGLFELVLIGVGAS-VGAGIFVVTGTVARDAGP-GVTISFLLAGAASVLNALCYAELASRFP 120 (578)
Q Consensus 43 ~~~~~~~~~~~~~~l~r~l~~~~~~~~~i~~~-ig~g~~~~~~~~~~~~G~-~~~~~~ii~~l~~~~~a~~~ael~~~~P 120 (578)
++|+...+.+++||+||++++++.+.++++.+ .-.|+-......+..+|| +..|+|++++.+.++.+++++|+++++|
T Consensus 32 ~d~~~L~~lgYkqef~R~fs~~s~fg~sFs~~g~~~~i~tsm~~gl~~gG~~~~vwgwlIa~~~~i~va~slaEl~Sa~P 111 (550)
T KOG1289|consen 32 SDEELLAELGYKQELKREFSLFSIFGISFSLMGLLPGIATSMAYGLGSGGPPTLVWGWLIAGFFSICVALSLAELCSAMP 111 (550)
T ss_pred CCHHHHHHcCCchhhhhhhhHHHHHHHHHHHhcchhhhhhheeeccccCChHHHHHHHHHHHHHHHHHHhHHHHHHhhCC
Confidence 33444456679999999999999988888754 224444444555566776 7999999999999999999999999999
Q ss_pred CCccchhhhhHHH----hchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCccccCCCccccccchh
Q 008094 121 AVVGGAYLYAYTA----FNELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLS 196 (578)
Q Consensus 121 ~~~GG~y~~~~~~----~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (578)
+ +||.|.|+... +||..+|++||...+++..+.++...+.++.+.....+. .+.+..+.+ .
T Consensus 112 t-sGgLy~waa~lap~k~~~~~sw~~Gw~~~~g~~~~~aSi~~S~A~~i~~~v~l~------np~y~~~~~--------~ 176 (550)
T KOG1289|consen 112 T-SGGLYFWAAVLAPPKYGPFASWVTGWLNYLGQATGVASITYSLAQLILGAVSLT------NPNYEPTNY--------H 176 (550)
T ss_pred C-CCcHHHHHHHhcCcchhhHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHhhc------CCCCcccce--------E
Confidence 9 99999999986 778899999999999999999999999999999887653 122322222 2
Q ss_pred hhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhhcc--------------cccCCCCCCCCCChHHHH
Q 008094 197 INILAPILLALLTIVLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAFE--------------VDVSNWSPFAPNGFKEIL 262 (578)
Q Consensus 197 ~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--------------~~~~~~~~~~~~g~~~~~ 262 (578)
...+..++..+..++|+...|...+++.+...+.++.+++.+|.-... .+..|..++.+.|+ .+.
T Consensus 177 ~~~v~~ai~~v~~lln~~p~r~l~~I~~~~~~~~ll~~~i~~I~lla~~~~k~gFns~~~iF~~f~N~sgw~~~G~-afi 255 (550)
T KOG1289|consen 177 QFGVFEAILFVHGLLNSLPTRVLARINSVSVYLNLLFLVILMITLLAASSKKTGFNSGSFIFGKFNNYSGWKNNGW-AFI 255 (550)
T ss_pred eehHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCceeeecccccCCCCcchH-HHH
Confidence 336888999999999999999999999999999988887777654332 12223334545677 788
Q ss_pred HHHHHHHhhccchHHHhhhhhhhcCCCCChhHHHHHHHHHHHHHHHHHHHHHhcccccc---ccCC--CChHHHHHHHcC
Q 008094 263 TGATVVFFAYVGFDAVANSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYK---FLDE--DAPLSDAFASRG 337 (578)
Q Consensus 263 ~~~~~~~~~~~G~e~~~~~~~E~k~P~k~ip~a~~~s~~~~~i~y~~~~~~~~~~~~~~---~~~~--~~p~~~~~~~~~ 337 (578)
.++....|++.|+|+++|++||+|||+|+.|||++.++.+..++-.+..+.+..++++| .+++ .+|+.+.+.+..
T Consensus 256 l~f~~~~wt~sGyDa~~H~aEE~~nAsk~aPrgIi~s~~i~~i~gw~~~I~i~~~i~~D~~~v~ns~~g~p~~~i~~~~l 335 (550)
T KOG1289|consen 256 LGFFNPAWTMSGYDAAAHMAEETKNASKAAPRGIISSIAIGFILGWIIIIGIAYTIPDDLDAVLNSSLGQPIVQIYYQAL 335 (550)
T ss_pred HhhccceeEEeccCchHHHHHHhcchhhhccHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHhcCCCCChHHHHHHHhc
Confidence 88999999999999999999999999999999999999999999999999999999854 2232 479999999886
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCc--hhhhhhcCCCCcchhHHHHHHHHHHHHHhhc-----C
Q 008094 338 LKYVSVLISFGAVAGLTTTLLVGLYVQSRLYLGLGRDGLLP--SIFAKVHPKRHTPVHSQVWVGIVAGILAGLF-----N 410 (578)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP--~~~~~~~~r~~~P~~ail~~~~i~~i~~~~~-----~ 410 (578)
++.....+....+++.+....+++.++||+.|+.||||.|| ++++|+||++++|.+|+++..+++.++.++. .
T Consensus 336 g~k~~v~~~~l~ii~~f~~gi~s~~a~SR~v~afaRDg~LP~S~~~~~v~~~t~~P~nAv~l~~i~s~llgll~L~s~~A 415 (550)
T KOG1289|consen 336 GKKGAVFLLSLIIIALFFMGISSLTASSRLVYAFARDGGLPFSKYLAKVNPQTKVPLNAVLLSCIISILLGLLILASATA 415 (550)
T ss_pred CCCceEehhHHHHHHHHHhhHHHHHHHHHHHhhhhccCCCCCcceeeecCCCCCCcHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 66666777778888888899999999999999999999999 9999999999999999999999988776653 3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhheecCCCCCCCccccchhhhh
Q 008094 411 VRVLSHILSVGTLTGYSVVSACVIALRWKDRTSRNDSSRLTSAWRQ 456 (578)
Q Consensus 411 ~~~l~~~~~~~~l~~y~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~ 456 (578)
++++.++..++..++|.++.++.+.++|++-++.|.+.++.+++..
T Consensus 416 f~Alfs~a~i~l~~Ay~iP~~~rlf~~r~~f~~gp~~lGk~s~p~~ 461 (550)
T KOG1289|consen 416 FNALFSAAAIALFIAYAIPIFCRLFFGRDDFRPGPFNLGKFSKPIG 461 (550)
T ss_pred HHHHHHHHHHHHHHHHHHhHHhheeecccccCCCCccccccccchH
Confidence 4667777777778899999998887777644444444444444433
|
|
| >TIGR03428 ureacarb_perm permease, urea carboxylase system | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-46 Score=398.73 Aligned_cols=380 Identities=22% Similarity=0.271 Sum_probs=290.0
Q ss_pred CCCCCCcccccChhHHHHHHhhhh-hhhhHHHHHHHHHhhhCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccchhhh
Q 008094 51 TNDGEGLLRRLGLFELVLIGVGAS-VGAGIFVVTGTVARDAGPGVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLY 129 (578)
Q Consensus 51 ~~~~~~l~r~l~~~~~~~~~i~~~-ig~g~~~~~~~~~~~~G~~~~~~~ii~~l~~~~~a~~~ael~~~~P~~~GG~y~~ 129 (578)
.+++|||||+++.++.++++++.+ ++.|++..++..+..+||..+++|+++++..++.+++++||++++|+ +||.|+|
T Consensus 5 ~g~~~~L~R~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~Gp~~~~~~li~~i~~l~~als~aEL~s~~P~-aGG~Y~~ 83 (475)
T TIGR03428 5 FGYQPQLHRKLGRYASFAAGFSFVSILTTIFQLFGFGYGFGGPAFFWTWPVVFVGQLLVALNFAELAARYPI-SGAIYQW 83 (475)
T ss_pred cCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHhhCCC-CCCHHHH
Confidence 457889999999999999999975 89999999999999999999999999999999999999999999999 9999999
Q ss_pred hHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCccccCCCccccccchhhhHHHHHHHHHHH
Q 008094 130 AYTAFNELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLT 209 (578)
Q Consensus 130 ~~~~~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (578)
+++.+||..||++||.+++++....+........++..+.......+.+ +++.. ........+++.+++++.+
T Consensus 84 ~~~~~g~~~gf~~gW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~------~~~~~~~~~~~~~~~~~~~ 156 (475)
T TIGR03428 84 SRRMGGEVIGWFAGWFMIIAQIVTAAAAAIALQVVLPNIWSGFQIIGED-PTLTS------PSGAANAVLLGSVLLVLTT 156 (475)
T ss_pred HHHHcCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccC-ccccC------CCchHHHHHHHHHHHHHHH
Confidence 9999999999999999999998777666666555544332111100000 01100 0001123456777788899
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCC---C----CCCCCCChHHHHHHHHHHHhhccchHHHhhhh
Q 008094 210 IVLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEVDVSN---W----SPFAPNGFKEILTGATVVFFAYVGFDAVANSA 282 (578)
Q Consensus 210 ~i~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~---~----~~~~~~g~~~~~~~~~~~~~~~~G~e~~~~~~ 282 (578)
.+|++|+|..++++++..+++++.++++++....+.+.+. + .+..+.....+..+....+|+|.|+|.+++++
T Consensus 157 ~in~~g~k~~~~i~~~~~~~~i~~l~~iii~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a 236 (475)
T TIGR03428 157 VINCIGVEWMSRVNTIGVTCEIVGVLAVIGVLFTHAQRGPGVVFDTSVTGASPGYYGAFLVSGLMAAYVMVGFGSAGELS 236 (475)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceeeecCCCCCCccHHHHHHHHHHHHHHHhcCcchHHHHH
Confidence 9999999999999999999988777666655443322110 1 11112223456778888999999999999999
Q ss_pred hhhcCCCCChhHHHHHHHHHHHHHHHHHHHHHhcccccc--ccCCCChHHHHHHHc-ChhHHHHHHHHHHHHHHHHHHHH
Q 008094 283 EESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYK--FLDEDAPLSDAFASR-GLKYVSVLISFGAVAGLTTTLLV 359 (578)
Q Consensus 283 ~E~k~P~k~ip~a~~~s~~~~~i~y~~~~~~~~~~~~~~--~~~~~~p~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 359 (578)
||+|||+||+|||++.++.++.++|.+..+......++. ....+++..+++.+. +.++.. .+....+++.+++.++
T Consensus 237 eE~knP~r~iPrai~~s~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~-~~~~~~~i~~~~~~~~ 315 (475)
T TIGR03428 237 EETKNPRRVAPRTILTALSVSALGGGLMILGALMAAPSLTDGRLAAEGLPYVLSAVLDSPWGT-VLLVDVAIAILVCTLA 315 (475)
T ss_pred HHhcCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHhhcCCCchHHHHHHHhCcHhHH-HHHHHHHHHHHHHHHH
Confidence 999999999999999999999888887777776655532 111122233344443 444443 3445557788899999
Q ss_pred HHHHHHHHHHHHhhcCCCc--hhhhhhcCCCCcchhHHHHHHHHHHHHHhhc-----CHHHHHHHHHHHHHHHHHHHHHH
Q 008094 360 GLYVQSRLYLGLGRDGLLP--SIFAKVHPKRHTPVHSQVWVGIVAGILAGLF-----NVRVLSHILSVGTLTGYSVVSAC 432 (578)
Q Consensus 360 ~~~~~sR~l~~~a~d~~lP--~~~~~~~~r~~~P~~ail~~~~i~~i~~~~~-----~~~~l~~~~~~~~l~~y~~~~~~ 432 (578)
.+.+.||++|++||||.+| ++|+|+|||+++|++|+++..+++.++.++. .++.+.++.+++..++|.++.++
T Consensus 316 ~~~~~sR~~~a~Ardg~lP~s~~~~~v~~r~~tP~~A~~l~~~i~~~~~~i~~~~~~af~~l~s~~~~~~~~~Y~~~~~~ 395 (475)
T TIGR03428 316 IQTAGSRLMFSMARDGKLPASAQLSRVHPRTGTPILPSIVIGVLCIGILLINVGNSALFATLASVCIVLIYLAYLLVTVP 395 (475)
T ss_pred HHHHHHHHHHHHHhcCCCcchHHhcccCCCCCCcHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999 4899999999999999999998877665542 24567777777888899998888
Q ss_pred Hhhheec
Q 008094 433 VIALRWK 439 (578)
Q Consensus 433 ~~~~r~~ 439 (578)
.+..|+|
T Consensus 396 ~l~~~~~ 402 (475)
T TIGR03428 396 LLLRRLR 402 (475)
T ss_pred HHHHHHh
Confidence 7776654
|
A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon. |
| >TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-43 Score=371.49 Aligned_cols=426 Identities=21% Similarity=0.290 Sum_probs=297.4
Q ss_pred cccChhHHHHHHhhhhhhhhHHHHHHHHHhhhCcHHHHHHHHHHHHH-HHHHHHHHHHhhcCCCCccchhhhhHHHhchh
Q 008094 59 RRLGLFELVLIGVGASVGAGIFVVTGTVARDAGPGVTISFLLAGAAS-VLNALCYAELASRFPAVVGGAYLYAYTAFNEL 137 (578)
Q Consensus 59 r~l~~~~~~~~~i~~~ig~g~~~~~~~~~~~~G~~~~~~~ii~~l~~-~~~a~~~ael~~~~P~~~GG~y~~~~~~~g~~ 137 (578)
||++.+++..+.+..+++ +...+ .....|+..++.|++++++. ++.+++++||++++|+ +||.|.|+++.+||.
T Consensus 1 ~~~~~~~l~~~~~~~v~~--~~~~~--~~a~~G~~~~~~~~i~~~~~~ip~al~~aEL~~~~P~-~GG~y~~~~~a~G~~ 75 (474)
T TIGR03813 1 KKLTVVTLAIMNITAVVS--LRGLP--AEAEYGLSAAFYYLFAAIFFLVPVSLVAAELATAWPE-KGGVFRWVGEAFGAR 75 (474)
T ss_pred CcccHHHHHHHHHHHHHH--hhcch--HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHccCCC-CCCceeeHhhhcChh
Confidence 469999999888887754 22223 23457888999999999875 6899999999999999 999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCccccCCCccccccchhhhHHHHHHHHHHHHHHHhhhH
Q 008094 138 TAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGVG 217 (578)
Q Consensus 138 ~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~ 217 (578)
+||..||.+|+++....+......+..+..+..... ..... .........+.++++++.+.+|++|+|
T Consensus 76 ~gf~~gw~~w~~~~~~~p~~~~~~~~~~~~~~~~~~-~~~~~-----------~~~~~~~~~~~l~~~~~~~~in~~gv~ 143 (474)
T TIGR03813 76 WGFLAIFMLWAQVTIWFPTVLTFGAVSLAFIGPEAT-VDESL-----------AGNKLYVLVSVLFVYWLATFIALRGVA 143 (474)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc-cCccc-----------ccccHHHHHHHHHHHHHHHHHHhcChH
Confidence 999999999999877655443333333222211000 00000 011112223555666778889999999
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHhhhhcc---cccC----CCCCCCCC--ChHHHHHHHHHHHhhccchHHHhhhhhhhcC
Q 008094 218 ESSVLNSCMTVV-KVIIVIVVIFAGAFE---VDVS----NWSPFAPN--GFKEILTGATVVFFAYVGFDAVANSAEESKK 287 (578)
Q Consensus 218 ~~~~~~~~~~~~-~~~~~~~~~i~~~~~---~~~~----~~~~~~~~--g~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~ 287 (578)
..++++++...+ ++++++++++.+... .+.. +++++.|+ ++..+..+ ...+|+|.|+|.++.++||+||
T Consensus 144 ~~~~i~~~~~~~~~ii~~~~~ii~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~-~~~~~af~G~e~~~~~a~E~kn 222 (474)
T TIGR03813 144 AFTKVAKWGGIVGTIIPAAILVILGISYLLTGGESQIPLRWDDAFPDFTNFDNVVLA-ASIFLFYAGMEMNAVHVKDVDN 222 (474)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCHHHhCCCccccccHHHH-HHHHHHHhchhHhHHHHHhccC
Confidence 999999886544 344444444433321 0110 12222232 23333322 2457899999999999999999
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHhccccccccCCCCh----HHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 008094 288 PQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLDEDAP----LSDAFASRGLKYVSVLISFGAVAGLTTTLLVGLYV 363 (578)
Q Consensus 288 P~k~ip~a~~~s~~~~~i~y~~~~~~~~~~~~~~~~~~~~p----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (578)
|+||+|||++.+..++.++|++..++...+.|+++...+++ +.+.....+.++...++.+..+++.+++.++.+.+
T Consensus 223 P~r~iPrAi~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~l~~~~~~~~~ 302 (474)
T TIGR03813 223 PDKNYPIAILIAALGTVLIFVLGTLAIAFIIPREDISLTQSLLVAFDNAFHWAGLSWLGPILAFALAIGVLAGVVTWVAG 302 (474)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHhccCHhhccccccHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999887654333 33445555667777777778888899999999999
Q ss_pred HHHHHHHHhhcCCCchhhhhhcCCCCcchhHHHHHHHHHHHHHhhc----C----HHHHHHHHHHHHHHHHHHHHHHHhh
Q 008094 364 QSRLYLGLGRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGILAGLF----N----VRVLSHILSVGTLTGYSVVSACVIA 435 (578)
Q Consensus 364 ~sR~l~~~a~d~~lP~~~~~~~~r~~~P~~ail~~~~i~~i~~~~~----~----~~~l~~~~~~~~l~~y~~~~~~~~~ 435 (578)
.+|+++++||||.+|++|+|+| |+++|++|++++.+++.++..+. + ++.+.++.+...++.|++.+++.++
T Consensus 303 ~sR~~~a~ardg~lP~~~~kv~-k~~~P~~a~~~~~~~~~~l~~~~~~~~s~~~~f~~l~~~~~~~~~i~y~~~~~a~i~ 381 (474)
T TIGR03813 303 PSSGMLAVAKAGYLPTFFQKTN-KNGMPIHIMFVQGIAVSVLSVLFVVMPSVQAAFQILSQLTVILYLVMYLLMFASAIY 381 (474)
T ss_pred HHHHHHHHhhcCCCCHHHhccC-CCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999 88999999999988755433221 2 3567777788888999999999999
Q ss_pred heecCCCCCCCccccchhhhhhHHHHHHHHHhhhhcchhhccc--------hhHHH-HHHHHHHHHHHHHHHHhccC
Q 008094 436 LRWKDRTSRNDSSRLTSAWRQGVICLIIIACCGFGAGLFYRIN--------ASYIL-LIVAVVIAVLASAMLCLRHG 503 (578)
Q Consensus 436 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~-~~~~~~~~~~~~~~~~~~~~ 503 (578)
+|+|+++.+||++-+.+++...++..+.+..+.+.......++ .++.. +..+.++...+.|+++.||+
T Consensus 382 lr~~~~~~~rpf~~p~g~~g~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~ny~~~~~~~~~~~~~~~~~~~~~~~ 458 (474)
T TIGR03813 382 LRYSQPDRPRPYRIPGGLAGMWFIGGLGFVGSALAFVLSFIPPSQIGTGSPTRYVGLLIGLAALFVTAPFLIYARRK 458 (474)
T ss_pred HHhcCCCCCCCeEecCCccchhHHHHHHHHHHHHHHheeEeCCcccCCCchHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9988888888876665555444444444444444433332222 12333 33444444555555554444
|
Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain. |
| >COG0531 PotE Amino acid transporters [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-42 Score=368.62 Aligned_cols=378 Identities=37% Similarity=0.564 Sum_probs=322.4
Q ss_pred CCCCcccccChhH-HHHHHhhhhhhhhHHHHHHHHHhhhCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccchhhhhH
Q 008094 53 DGEGLLRRLGLFE-LVLIGVGASVGAGIFVVTGTVARDAGPGVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAY 131 (578)
Q Consensus 53 ~~~~l~r~l~~~~-~~~~~i~~~ig~g~~~~~~~~~~~~G~~~~~~~ii~~l~~~~~a~~~ael~~~~P~~~GG~y~~~~ 131 (578)
++++++|+++.++ +..+.++.++|.|++..++.....+ +...++|++++++..+.+++++|+++.+|+ +||.|.|++
T Consensus 6 ~~~~~~~~l~~~~~~~~~~~~~~~~~gif~~~~~~~~~~-~~~~~~~li~~~~~~~~a~~~~el~~~~p~-~GG~y~~~~ 83 (466)
T COG0531 6 MSSELKKKLGLFDLLTALGVGSMIGSGIFALPGSAAGLA-PAAILAWLIAGIIILFLALSYAELSSAIPS-AGGAYAYAK 83 (466)
T ss_pred cchhcCCCcchHHHHHHHHHHhhHhhhhHhhhhhHHHhc-hHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CCCeeeehh
Confidence 4566789999999 8899999999999999999887766 655555999999988889999999999999 999999999
Q ss_pred HHhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCccccCCCccccccchhhhHHHHHHHHHHHHH
Q 008094 132 TAFNELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIV 211 (578)
Q Consensus 132 ~~~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 211 (578)
+.+||..|+.++|.+++++....++.+.....++..+++..+.+ ..+ .....+++.+++++...+
T Consensus 84 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-------------~~~~~~~~~~~~~~~~~l 148 (466)
T COG0531 84 RALGPRLGFLAGWLYLLAYVIALAAIAIGAASYLSYLFPGPGLL--SIG-------------PLLIILIALALIALLTLL 148 (466)
T ss_pred hhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhh--cCC-------------chHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999777765421000 000 023446888999999999
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCCCCCCC-----CCChHHHHHHHHHHHhhccchHHHhhhhhhhc
Q 008094 212 LCWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEVDVSNWSPFA-----PNGFKEILTGATVVFFAYVGFDAVANSAEESK 286 (578)
Q Consensus 212 ~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-----~~g~~~~~~~~~~~~~~~~G~e~~~~~~~E~k 286 (578)
|++|+|..++++.+.+.+++++++++.+.+....+..+.+.+. ......+..++...+|+|.|+|.+++++||+|
T Consensus 149 n~~G~~~~~~~~~~~~~~~i~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~E~k 228 (466)
T COG0531 149 NLRGIKASAKINSIITILKIIILLIFIILGLFAFGFSNGNLFAPFNPGGGSFGGILAAILLAFFAFTGFEAIATLAEEVK 228 (466)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccccCCCcccccchHHHHHHHHHHHHHHhhcHHHHHHHHHHhc
Confidence 9999999999999999999999999988877765544322211 12344678888999999999999999999999
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHHHHHhccccccccCCC---ChHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 008094 287 KPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLDED---APLSDAFASRGLKYVSVLISFGAVAGLTTTLLVGLYV 363 (578)
Q Consensus 287 ~P~k~ip~a~~~s~~~~~i~y~~~~~~~~~~~~~~~~~~~---~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (578)
||+|++|||++.+.+.+.++|++.........|.+++... .|..+......+.+...++.+..+.+.+++.++...+
T Consensus 229 np~r~ip~aii~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~~ 308 (466)
T COG0531 229 NPKRTIPRAIILSLLIVLILYILGALVIVGVLPAGDLAASAPSAPLALAALFGGGNWGAIIIAILALLSLFGSLLAWILA 308 (466)
T ss_pred CccccccHHHHHHHHHHHHHHHHHHHHHHhCccHHHHhccCCCccHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999988644433 6888888888878888999999999999999999999
Q ss_pred HHHHHHHHhhcCCCchhhhhhcCCCCcchhHHHHHHHHHHHHHhhc-----CHHHHHHHHHHHHHHHHHHHHHHHhhhee
Q 008094 364 QSRLYLGLGRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGILAGLF-----NVRVLSHILSVGTLTGYSVVSACVIALRW 438 (578)
Q Consensus 364 ~sR~l~~~a~d~~lP~~~~~~~~r~~~P~~ail~~~~i~~i~~~~~-----~~~~l~~~~~~~~l~~y~~~~~~~~~~r~ 438 (578)
.+|.+++|||||.+|++|+|+|+|+++|++++++..+++.++.... .++.+.++.+...++.|.+...+.+.+|+
T Consensus 309 ~sR~~~~~ardg~lP~~~~~~~~~~~~P~~a~~~~~ii~~~l~~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~~~~~~~~ 388 (466)
T COG0531 309 VSRVLYAMARDGLLPKFFAKVNPKGRTPVIALILTGIISLILLLLFPLSSIAFNALVSLASVAFLIAYLLVALALLVLRR 388 (466)
T ss_pred HHHHHHHHHhCCCccHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999987333332 35789999999999999999999999998
Q ss_pred cCCCCCCCc
Q 008094 439 KDRTSRNDS 447 (578)
Q Consensus 439 ~~~~~~~~~ 447 (578)
|+++.+|+.
T Consensus 389 ~~~~~~~~~ 397 (466)
T COG0531 389 KKPDLKRPF 397 (466)
T ss_pred cCCCCCCcc
Confidence 876654443
|
|
| >TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-41 Score=362.74 Aligned_cols=395 Identities=18% Similarity=0.209 Sum_probs=284.8
Q ss_pred ccccChhHHHHHHhhhhhhhhHHHHHHHHHhhhCcHHHHHHHHHHHH-HHHHHHHHHHHhhcCC-CCccchhhhhHHHhc
Q 008094 58 LRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGPGVTISFLLAGAA-SVLNALCYAELASRFP-AVVGGAYLYAYTAFN 135 (578)
Q Consensus 58 ~r~l~~~~~~~~~i~~~ig~g~~~~~~~~~~~~G~~~~~~~ii~~l~-~~~~a~~~ael~~~~P-~~~GG~y~~~~~~~g 135 (578)
+||++.++++++.++.+. ++...+. ....|...+..+++++++ .++.+++++||++++| + +||.|.|+++++|
T Consensus 3 ~~~l~~~~~~~~~~~~v~--~~~~~~~--~a~~G~~~i~~~i~~~l~~~lp~al~~AELas~~p~~-~GG~y~wv~~a~G 77 (507)
T TIGR00910 3 AKKLSLFGFFAITASMVL--AVYEYPT--FATSGFHLVFFLLLGGILWFIPVALCAAEMATVDGWE-EGGIFAWVSNTLG 77 (507)
T ss_pred CcEeeHHHHHHHHHHHHH--HHHhhHH--HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCC-CCCeeeehhhccC
Confidence 577999999999988874 3444442 446788777778888887 6889999999999997 7 8999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCccccCCCccccccchhhhHHHHHHHHHHHHHHHhh
Q 008094 136 ELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWG 215 (578)
Q Consensus 136 ~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g 215 (578)
|.+||.++|.+|+.+....+.........+..... .|.+. .+ .....+..++++++++++|++|
T Consensus 78 ~~~Gf~~~~~~W~~~~~~~~~~~~~~~~~~~y~~~-~~~~~--~~-------------~~~~~i~~l~i~~~~t~~n~~G 141 (507)
T TIGR00910 78 ERFGFAAIFFGWFQIAIGFIPMIYFILGALSYILK-FPALN--ED-------------PIIKFIAALIIFWALAFSQFGG 141 (507)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-Cchhc--cC-------------cHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999998776554443333333222221 11110 01 1122345566777888999999
Q ss_pred hHHHHHHHHHHHHHHHHH-HHHHHhhhhcc--cc-c----CCCCCCCCCC-hHHHHHHHHHHHhhccchHHHhhhhhhhc
Q 008094 216 VGESSVLNSCMTVVKVII-VIVVIFAGAFE--VD-V----SNWSPFAPNG-FKEILTGATVVFFAYVGFDAVANSAEESK 286 (578)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~--~~-~----~~~~~~~~~g-~~~~~~~~~~~~~~~~G~e~~~~~~~E~k 286 (578)
.|..++++++..+..++. .+++++.+... .+ . .+.+++.|+. ..+....+...+|+|.|+|.+++++||+|
T Consensus 142 ~k~~~~i~~i~~~~~~~i~~~ili~l~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~~~faf~G~E~~a~~a~E~k 221 (507)
T TIGR00910 142 TKRTAKIAKAGFFAGILIPAFILFALAAAYFHGGAPIAIEIDSHAFFPDFSKVGTLVVFVAFIGAYMGVEASASHINELE 221 (507)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccCCcHHhcCCCcccccHHHHHHHHHHHHhcHHHHHHHHHHcc
Confidence 999999998876544333 33333222211 11 1 1112233321 11333444556899999999999999999
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHHHHHhccccccccCCCChHHHH----HHHcC--hhHHHHHHHHHHHHHHHHHHHHH
Q 008094 287 KPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLDEDAPLSDA----FASRG--LKYVSVLISFGAVAGLTTTLLVG 360 (578)
Q Consensus 287 ~P~k~ip~a~~~s~~~~~i~y~~~~~~~~~~~~~~~~~~~~p~~~~----~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 360 (578)
||+||+|||++.+.+++.++|.+..+.+....|+++.+.+++..+. ....+ .++...++.+..+++.+++.+++
T Consensus 222 nP~r~~PrAi~~~~i~~~~l~~l~~~~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~l~~~~~~ 301 (507)
T TIGR00910 222 NPGRDYPLAMILLMIAAICLDAIGGFSIAAVIPGKEINLSAGVIQTFQTLILHFAHEIEWLVKVIAALIAFGVLAEIASW 301 (507)
T ss_pred CCcccccHHHHHHHHHHHHHHHHHHHHHheecChhhcccchHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999988888888888876644433333 33332 25566677888888999999999
Q ss_pred HHHHHHHHHHHhhcCCCchhhhhhcCCCCcchhHHHHHHHHHHHHHhhc---------CHHHHHHHHHHHHHHHHHHHHH
Q 008094 361 LYVQSRLYLGLGRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGILAGLF---------NVRVLSHILSVGTLTGYSVVSA 431 (578)
Q Consensus 361 ~~~~sR~l~~~a~d~~lP~~~~~~~~r~~~P~~ail~~~~i~~i~~~~~---------~~~~l~~~~~~~~l~~y~~~~~ 431 (578)
+++.||+++++||||.+|++|+|+| |+++|++|++++.+++.++.++. .+..+.++.+...++.|++..+
T Consensus 302 i~~~sR~l~~~ardg~lP~~~~k~n-k~~~P~~a~~~~~~i~~l~~~~~~~~~~~~~~~f~~l~~~~~~~~~i~Y~l~~~ 380 (507)
T TIGR00910 302 IVGPSRGMFAAAQKGLLPAAFAKMN-KHEVPVPLVIIQGIITSIAGAILTFGGGGNNLSFLIAIALTVVIYLCAYFLFFI 380 (507)
T ss_pred HHHHHHHHHHhcccCCcCHHHHhhC-cCCCcHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999 88999999999998877644331 1234556677888999999999
Q ss_pred HHhhheecCCCCCCCccccchhhhhhHHHHHHHHHhhhhcchh
Q 008094 432 CVIALRWKDRTSRNDSSRLTSAWRQGVICLIIIACCGFGAGLF 474 (578)
Q Consensus 432 ~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (578)
+.+++|+|+++..||++-+.+++...++..+.+..+.+...+.
T Consensus 381 a~i~lr~k~p~~~rpf~~pg~~~~~~i~~~~~~~~~~~~~v~~ 423 (507)
T TIGR00910 381 GYFVLILKHPDLKRTFNIPGGIGGKLIIAGIGFLLSIFAFFIS 423 (507)
T ss_pred HHHHHHHhcCCCCCCeEecCCccchhhHHHHHHHHHHHHHhee
Confidence 9999999999888887766555544455555555555444433
|
Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009 |
| >PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-42 Score=365.92 Aligned_cols=362 Identities=33% Similarity=0.557 Sum_probs=307.4
Q ss_pred cChhHHHHHHhhhhhhhhHHHHHHHHHhhhCcHHHHHHHHHHHHH-HHHHHHHHHHhhcCCCCccchhhhhHHHhchhhH
Q 008094 61 LGLFELVLIGVGASVGAGIFVVTGTVARDAGPGVTISFLLAGAAS-VLNALCYAELASRFPAVVGGAYLYAYTAFNELTA 139 (578)
Q Consensus 61 l~~~~~~~~~i~~~ig~g~~~~~~~~~~~~G~~~~~~~ii~~l~~-~~~a~~~ael~~~~P~~~GG~y~~~~~~~g~~~g 139 (578)
+++++..+++++.++|+|++..+ ....+|+..+++|++++++. ++.+++|+|+++++|+ +||.|.|+++.+||..|
T Consensus 1 l~~~~~~~l~~~~~~g~gi~~~~--~~~~~G~~~~~~~~i~~~~~~l~~a~~~~el~~~~p~-~GG~y~~~~~~~g~~~g 77 (426)
T PF13520_consen 1 LGLFSAIALVIGSIIGSGIFFSP--AAASAGPSAILAWIIAALLFFLPIALSYAELSSAYPS-AGGIYVWVSRAFGPFWG 77 (426)
T ss_dssp B-HHHHHHHHHHCHHTTTTTTHH--HHTCTGCHHHHHHHHHHHHHHHHHHHHHHHHHTTTTS-STTHHHHHHHHH-HHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHH--HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC-cCeeeehhhhcccccch
Confidence 58899999999999999999887 66668998899999998887 8999999999999999 99999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCccccCCCccccccchhhhHHHHHHHHHHHHHHHhhhHHH
Q 008094 140 FLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGVGES 219 (578)
Q Consensus 140 ~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~ 219 (578)
+.++|.++++|....+..+...++++...++ +.+ .+++....++++++++....+|++|.|..
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~---------------~~~~~~~~~i~~~~~~~~~~l~~~g~~~~ 140 (426)
T PF13520_consen 78 FIVGWLYWVAYILSLASVASSFASYLLSLFG--PDL---------------NPSPWPQFLIAIILILLFTLLNLLGIKLS 140 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTTTT--GGG---------------TCSHHHHHHHHHHHHHHHHHHHHTTHHHH
T ss_pred hcccceeEEEeeccccccccchhhhhhhccc--ccc---------------ccccchheeeeecccccceEeeechhhhh
Confidence 9999999999999988888888888765432 100 01122344678889999999999999999
Q ss_pred HHHHHHHHHHHH-HHHHHHHhhhhcccccCC-------CCCCCCCChHHHHHHHHHHHhhccchHHHhhhhhhhcCCCCC
Q 008094 220 SVLNSCMTVVKV-IIVIVVIFAGAFEVDVSN-------WSPFAPNGFKEILTGATVVFFAYVGFDAVANSAEESKKPQRD 291 (578)
Q Consensus 220 ~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~-------~~~~~~~g~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~P~k~ 291 (578)
+|++.+.+.+++ ..++++++.++...+.+. .+++.|+++.+++.++...+|+|.|+|.+++++||.|| ||
T Consensus 141 ~~~~~~~~~~~i~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~--k~ 218 (426)
T PF13520_consen 141 GKIQNILTVIKIVIPLLVLIILGIVSFSFSGFNSLSFSLSTFFPSGWPGFLAGFSVAFFAFSGFEAIASLAEENKN--KT 218 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHH----SHSCSSCSSSSHHHHHHHHHGGGGTTTTHHHHGGGGSSS--HH
T ss_pred hhhhhhhhhhhhhhhhhhheeEEEeeecccccccccccccccCCccccchhhHHHHHHhhcccccccccccccccc--hh
Confidence 999999999999 566666666655433221 22445666667888999999999999999999999777 89
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhccccccccCCCC----hHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008094 292 LPIGILGSLLICAALYVGVSLVLTGMVPYKFLDEDA----PLSDAFASRGLKYVSVLISFGAVAGLTTTLLVGLYVQSRL 367 (578)
Q Consensus 292 ip~a~~~s~~~~~i~y~~~~~~~~~~~~~~~~~~~~----p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~ 367 (578)
+|||++.+.+++.++|.+..++.....|+++.+.++ +.....+..++++...++.+..+++.+++.++.+.+.+|+
T Consensus 219 ip~ai~~~~~~~~i~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~ 298 (426)
T PF13520_consen 219 IPRAIIISIIIVAIIYILFSIALLGALPDDELANSSNSPSPFAVLASAVGGSWLAIIVSIAAILSLFGSINAFIFGASRL 298 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSTHCHHHTTTCHHCHHHHHHHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred heeecccchhHHHHHHhhhhheeeecccchhhhcccccccccchhhccccccccccccccccccccccccchhhcchhhc
Confidence 999999999999999999999999999988765432 4667777778789999999999999999999999999999
Q ss_pred HHHHhhcCCCchhhhhhcCCCCcchhHHHHHHHHHHHHHhhc------CHHHHHHHHHHHHHHHHHHHHHHHhhheecCC
Q 008094 368 YLGLGRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGILAGLF------NVRVLSHILSVGTLTGYSVVSACVIALRWKDR 441 (578)
Q Consensus 368 l~~~a~d~~lP~~~~~~~~r~~~P~~ail~~~~i~~i~~~~~------~~~~l~~~~~~~~l~~y~~~~~~~~~~r~~~~ 441 (578)
+++|||||.+|++|+|+| |+++|++|+++..+++.++.... +++.+.++.++...+.|.+..++.+++|+|++
T Consensus 299 l~~~a~d~~lP~~~~~~~-k~~~P~~a~~~~~~i~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (426)
T PF13520_consen 299 LYAMARDGVLPKWFAKVN-KFGTPYNAIILVAVISSILLLLFLFIPQSSFDILVSLSSVGYLISYILVILAVLFLRRKRP 377 (426)
T ss_dssp HHHHHHTTSSSGGGGTTS-SSSSCHHHHHHHHHHHHHHHHHTTTSSSSHHHHHHHHHHHHTHHHHHHHHHHHHHTHHHSC
T ss_pred ccccccccchhhhhhhcc-ccCCceeeehhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Confidence 999999999999999999 99999999999999986654332 45789999999999999999999999999988
Q ss_pred CCCC
Q 008094 442 TSRN 445 (578)
Q Consensus 442 ~~~~ 445 (578)
+.+|
T Consensus 378 ~~~r 381 (426)
T PF13520_consen 378 DLKR 381 (426)
T ss_dssp SSGH
T ss_pred CcCC
Confidence 7644
|
... |
| >PRK15238 inner membrane transporter YjeM; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-40 Score=356.85 Aligned_cols=434 Identities=16% Similarity=0.196 Sum_probs=291.2
Q ss_pred cccccChhHHHHHHhhhhhhhhHHHHHHHHHhhhCcHHHHHHHHHHHH-HHHHHHHHHHHhhcCCCCccchhhhhHHHhc
Q 008094 57 LLRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGPGVTISFLLAGAA-SVLNALCYAELASRFPAVVGGAYLYAYTAFN 135 (578)
Q Consensus 57 l~r~l~~~~~~~~~i~~~ig~g~~~~~~~~~~~~G~~~~~~~ii~~l~-~~~~a~~~ael~~~~P~~~GG~y~~~~~~~g 135 (578)
+||+++++++..++++.++|.+. .+.....+||..++.+++++++ .++.+++++|+++++|+++||.|+|+++.+|
T Consensus 5 ~~~~l~~~~l~~~~~~~vig~~~---~~~~~~~~G~~~i~~~~i~~~~~~l~~al~~aEL~s~~P~~aGG~Y~w~~~~~G 81 (496)
T PRK15238 5 TKKKLSLIGLILMIFTSVFGFAN---SPRAFYLMGYSAIPWYILSAILFFIPFALMMAEYGSAFKDEKGGIYSWMNKSVG 81 (496)
T ss_pred ccCeeeHHHHHHHHHHHHHhCCc---hHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHcC
Confidence 47889999999999999998652 2334566888777777777766 6889999999999999526999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhcccccCCCCccccCCCccccccchhhhHHHHHHHHHHHHHHHh
Q 008094 136 ELTAFLVFAQLMLDYHIGAASIARSLASYVVS-ILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCW 214 (578)
Q Consensus 136 ~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 214 (578)
|.+||..+|.+|.++....+............ ++... ....|.... .+......+++++.+++++.+|++
T Consensus 82 ~~~gf~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~----~~~~~~~~~~a~~~~~~~t~vn~~ 152 (496)
T PRK15238 82 PKFAFIGTFMWFASYIIWMVSTASKIWIPFSTFIFGKD-----TTQTWHFLG----LNSTQVVGILAVIWMILVTFVASK 152 (496)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcc-----hhhhhhhhc----ccchHHHHHHHHHHHHHHHHHHcc
Confidence 99999999998888776554333221111111 11100 000110000 001112224555666688999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhh---h-ccc-c---cCCCCCCC---CCCh---HHHHHHHHHHHhhccchHHHhh
Q 008094 215 GVGESSVLNSCMTVVKVIIVIVVIFAG---A-FEV-D---VSNWSPFA---PNGF---KEILTGATVVFFAYVGFDAVAN 280 (578)
Q Consensus 215 g~~~~~~~~~~~~~~~~~~~~~~~i~~---~-~~~-~---~~~~~~~~---~~g~---~~~~~~~~~~~~~~~G~e~~~~ 280 (578)
|+|..++++++.+.+++...+++++.. . ... + ..++.++. ..++ .+++.++..+.|+|.|+|.+++
T Consensus 153 g~~~~~~i~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~ 232 (496)
T PRK15238 153 GINKIAKVTSIGGIAVMLLNIVLLLVSIIILILNGGHFAQPIGVSSFVTSPNPAYQSPIAVLSFVVFAIFAYGGIEAVGG 232 (496)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccccHhhcccCCCCccccchHHHHHHHHHHHHHHhHHHHHH
Confidence 999999999988777654432222111 1 111 1 00111111 1111 2577778889999999999999
Q ss_pred hhhhhcCCCCChhHHHHHHHHHHHHHHHHHHHHHhccccccccCC-------CChHHHHHHHc-----------------
Q 008094 281 SAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLDE-------DAPLSDAFASR----------------- 336 (578)
Q Consensus 281 ~~~E~k~P~k~ip~a~~~s~~~~~i~y~~~~~~~~~~~~~~~~~~-------~~p~~~~~~~~----------------- 336 (578)
++||+|||||++|||++.+..++.++|++..+.+....|+++... +.|.. ..+..
T Consensus 233 ~a~E~~~p~~~~p~ai~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~g~~~~~~~~ 311 (496)
T PRK15238 233 LVDKTENPEKNFPKGIIIAAIVISIGYSLAIFLWGVSTNWQQVLSNKSVNLGNITYV-LMNNLGYTLGHALGLSPAASLT 311 (496)
T ss_pred HHHhccCCCccccHHHHHHHHHHHHHHHHHHHHHHhcCchhhcCCccccchhccHHH-HHHHHHHHHHHHhccchhhhhh
Confidence 999999999999999999999999999999888877777665432 11221 11211
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhhhhcCCCCcchhHHHHHHHHHHHHHhhc--C----
Q 008094 337 GLKYVSVLISFGAVAGLTTTLLVGLYVQSRLYLGLGRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGILAGLF--N---- 410 (578)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP~~~~~~~~r~~~P~~ail~~~~i~~i~~~~~--~---- 410 (578)
.+.+...++.+..+.+.+++.++..++.+|.+++++|||.+||+|+|+| |+++|++|++++.+++.++..+. .
T Consensus 312 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~g~~P~~f~k~n-k~g~P~~a~~~~~~i~~l~~~~~~~~~~~~ 390 (496)
T PRK15238 312 LGVWFARITGLSMFLAYTGAFFTLSYSPLKQLIEGTPKALWPKKMTKLN-KNGMPANAMWLQCIIVSVFILLVSFGGDAA 390 (496)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhCccCcccHHHHhhC-cCCCcHHHHHHHHHHHHHHHHHHHhCchhH
Confidence 1234445667788889999999999999999999999999999999999 89999999999988776553332 1
Q ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHhhheecCCCCCCCccccchhhhhhHHHHHHHHHhhhhcchhhcc-----chhH-
Q 008094 411 ---VRVLSHILSVGTLTGYSVVSACVIALRWKDRTSRNDSSRLTSAWRQGVICLIIIACCGFGAGLFYRI-----NASY- 481 (578)
Q Consensus 411 ---~~~l~~~~~~~~l~~y~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~- 481 (578)
++.+.++.++..++.|++.+++++++|| +++.+||++.++++.....+..+.+....+...+.... +...
T Consensus 391 ~~~f~~l~~l~~~~~li~y~~~~~a~i~~r~-~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 469 (496)
T PRK15238 391 SAFFNILTLMANVSMTLPYLFLAGAFPFFKK-KKDIDRPFVVFKTKKSTLIATIVVVLVVGFANVFTIIQPVIEGDYQST 469 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-ccCCCCCceecCCcceehhHHHHHHHHHHHHHHHheeCCCcCCCHHHH
Confidence 4678999999999999999999999876 56667776655443222233333333333322222221 1222
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCC
Q 008094 482 ILLIVAVVIAVLASAMLCLRHGYS 505 (578)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~~~ 505 (578)
....++.++...+.+.++++|+++
T Consensus 470 ~~~~~~~~i~~~~~~~~~~~~~~~ 493 (496)
T PRK15238 470 FWMIGGPVFFSILAWIIYQNYEKK 493 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHhhchh
Confidence 234445555555566665555544
|
|
| >PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-44 Score=386.81 Aligned_cols=359 Identities=30% Similarity=0.485 Sum_probs=300.8
Q ss_pred HHHHHhhhhhhhhHHHHHHHHHhhhCc-HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccchhhhhHHHhchhhHHHHHH
Q 008094 66 LVLIGVGASVGAGIFVVTGTVARDAGP-GVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNELTAFLVFA 144 (578)
Q Consensus 66 ~~~~~i~~~ig~g~~~~~~~~~~~~G~-~~~~~~ii~~l~~~~~a~~~ael~~~~P~~~GG~y~~~~~~~g~~~g~~~g~ 144 (578)
+.+++++.++|+|.|...+.....+|| +.++++++++++.++.+.+++||++++|+ +||.|.|++|.+||..|+.+||
T Consensus 2 v~~~~ig~~ig~g~f~~~g~~~~~~G~~~~~la~li~~i~~~~~~~~~~ems~~~p~-~Gg~y~y~~~~lg~~~Gf~~gw 80 (478)
T PF00324_consen 2 VFMISIGGIIGTGLFLGSGFAIAAAGPGGAPLAYLIAGIIVLLVALSLAEMSRRFPS-AGGFYAYASRGLGPALGFAAGW 80 (478)
T ss_pred EEEeeHHHHHHHHHHHHHHHHHHhcccccchhHhHHHHHHHHhhhhhhhhhhhhhcc-ccchhhhhhhccCCcCCceeeH
Confidence 345788999999999999999999999 78999999999999999999999999998 9999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCC-ccccCCCccccccchhhhHHHHHHHHHHHHHHHhhhHHHHHHH
Q 008094 145 QLMLDYHIGAASIARSLASYVVSILELFPFFKENIP-SWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGVGESSVLN 223 (578)
Q Consensus 145 ~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~ 223 (578)
.+|+.+....+......+.++..+ +..+ +.+ .|.+.. ++..+++++...+|++|+|..++++
T Consensus 81 ~y~~~~~~~~~~~~~~~~~~~~~~-~~~~----~~~~~~~~~~------------~~~~i~~~~~~~l~~~gv~~~~~~~ 143 (478)
T PF00324_consen 81 AYWLSYIAAIAAEATAAGSFLQFW-GYFP----GLPSTWVWGI------------LIAIIFILLITLLNLFGVRVSGKIE 143 (478)
T ss_pred HHHHHHHHHHHhhhhhhhhhhccc-cccc----cccccccccc------------hhhhhhhhhhhhhhhhhhhccchHH
Confidence 999999999888887777666544 1111 222 332110 3577788888999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhh-hc-ccc--cCCC---------CCCCCCC--------hHHHHHHHHHHHhhccchHHHhhhh
Q 008094 224 SCMTVVKVIIVIVVIFAG-AF-EVD--VSNW---------SPFAPNG--------FKEILTGATVVFFAYVGFDAVANSA 282 (578)
Q Consensus 224 ~~~~~~~~~~~~~~~i~~-~~-~~~--~~~~---------~~~~~~g--------~~~~~~~~~~~~~~~~G~e~~~~~~ 282 (578)
.++..++++.++.+++.+ .. ..+ ..+. ++..+++ +.+++.++..++++|.|+|+++..+
T Consensus 144 ~~~~~i~~~~li~~ii~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~a~~a 223 (478)
T PF00324_consen 144 FILTIIKLIALIAFIIVGVIILFFGGGPSNGRYWGDPGSFANNFPPGFTDPSGGGFSGFFAALVFAFFAFVGFESIAILA 223 (478)
T ss_pred HHHHHHhhhHhhhhhhhcccccccccCCCcccccccccccccccccccccccccchhHHHHhhhhhhccccccccccccc
Confidence 999999999888888777 21 111 1111 1122333 7789999999999999999999999
Q ss_pred hhhcCCCCChhHHHHHHHHHHHHHHHHHHHHHhccccccccCCC------ChHHHHHHHcChhHHHHHHHHHHHHHHHHH
Q 008094 283 EESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLDED------APLSDAFASRGLKYVSVLISFGAVAGLTTT 356 (578)
Q Consensus 283 ~E~k~P~k~ip~a~~~s~~~~~i~y~~~~~~~~~~~~~~~~~~~------~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (578)
||+|||||++|||+..++++++++|++..++.....|+++.... +|+.++.+..++++...++.+..+++.+++
T Consensus 224 ~E~k~P~k~IPra~~~~~~~~~v~y~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~i~~~~~l~s~~s~ 303 (478)
T PF00324_consen 224 EEAKNPRKTIPRATLLSVLRIGVFYVLTSYALTLAVPYDNLGLTAASNSASPFVIAAQYSGGPWLAWIVNAGILISAFSS 303 (478)
T ss_pred ccCCCchhhhhhHhhhhhhhhhhhhhhhhhhcccccCccchhhccccccccchhhhhhhcccccccceecccchhhhhhh
Confidence 99999999999999999999999999999999999988865321 488899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcCCCchhhhhhcCCCCcchhHHHHHHHHHHHHHhhcC------HHHHHHHHHHHHHHHHHHHH
Q 008094 357 LLVGLYVQSRLYLGLGRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGILAGLFN------VRVLSHILSVGTLTGYSVVS 430 (578)
Q Consensus 357 ~~~~~~~~sR~l~~~a~d~~lP~~~~~~~~r~~~P~~ail~~~~i~~i~~~~~~------~~~l~~~~~~~~l~~y~~~~ 430 (578)
.++.++++||++++|||||.+|+++.++|+|+++|++|++++.+++.+..+..+ ++.+.++.++..++.|.+.+
T Consensus 304 ~~~~~~~~sR~l~ama~dg~lP~~~~~~~~k~~~P~~Ai~~~~~i~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 383 (478)
T PF00324_consen 304 ANASLYAASRLLYAMARDGLLPKKFFARHPKNGVPYVAILVSSIISLLVLLLGSFSPGIVFNWLLNISTISNLIVYILIN 383 (478)
T ss_pred hhhhhcccceeehhhhhhhhhhhhhhhhhhcCCceEEEEeeehhchheeeeeccchhhHHHHHHhhhhhhhhhhHHHhhh
Confidence 999999999999999999999966666677999999999999888776654432 34667777888889999999
Q ss_pred HHHhhheecCCC
Q 008094 431 ACVIALRWKDRT 442 (578)
Q Consensus 431 ~~~~~~r~~~~~ 442 (578)
++.+++|++.+.
T Consensus 384 ~s~~~~r~~~~~ 395 (478)
T PF00324_consen 384 ISYIRFRKKFKY 395 (478)
T ss_pred hhhhhhhhhhcc
Confidence 999988877543
|
A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane |
| >TIGR00837 araaP aromatic amino acid transport protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.6e-28 Score=253.33 Aligned_cols=336 Identities=15% Similarity=0.096 Sum_probs=260.9
Q ss_pred HHHhhhhhhhhHHHHHHHHHhhhCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccchhhhhHHHhchhhHHHHHHHHH
Q 008094 68 LIGVGASVGAGIFVVTGTVARDAGPGVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNELTAFLVFAQLM 147 (578)
Q Consensus 68 ~~~i~~~ig~g~~~~~~~~~~~~G~~~~~~~ii~~l~~~~~a~~~ael~~~~P~~~GG~y~~~~~~~g~~~g~~~g~~~~ 147 (578)
++.+++++|+|++..|+...+.+++..++..+++++.+...+++++|+++++|+ +||.|.|+++.+||..|++.+|.++
T Consensus 4 ~lv~gt~IGaGIl~lP~~~a~~g~~~~~~~~i~~~~~~~~~~l~~~el~~~~p~-~~~~~~~~~~~~G~~~g~~~~~~~~ 82 (381)
T TIGR00837 4 LIIAGTTIGAGMLALPTSTAGAWFIWTLLLLILLWFLMLHSGLLLLEVYLTYPG-GASFNTIAKDLLGKTGNIIAGLSLL 82 (381)
T ss_pred EEeehhhHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CCCHHHHHHHHhCHHHHHHHHHHHH
Confidence 456789999999999998777666667777899999999999999999999998 8999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCccccCCCccccccchhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 008094 148 LDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGVGESSVLNSCMT 227 (578)
Q Consensus 148 l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~ 227 (578)
+.+.....++....++++..++... ...+.+ ..+..+++.+++..++.+|.|..+|+|.+.+
T Consensus 83 ~~~~~~~~ay~~~~~~~l~~~~~~~--~~~~~~----------------~~~~~~~~~~v~~~l~~~G~~~~~~v~~i~~ 144 (381)
T TIGR00837 83 FVLYILTYAYISGGGSILSRLIGEY--FGFPWS----------------ARAIVLIFTVLFGSFVWLSTSAVDRITRVLI 144 (381)
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHh--cCCCcc----------------HHHHHHHHHHHHHHHHHhchhHHHHHHHHHH
Confidence 9888777788888888887765421 111111 1235666777888999999999999999999
Q ss_pred HHHHHHHHHHHhhhhcccccCCCCCCC--CCChHHHHHHHHHHHhhccchH-HHhhhhhhhcCCCCChhHHHHHHHHHHH
Q 008094 228 VVKVIIVIVVIFAGAFEVDVSNWSPFA--PNGFKEILTGATVVFFAYVGFD-AVANSAEESKKPQRDLPIGILGSLLICA 304 (578)
Q Consensus 228 ~~~~~~~~~~~i~~~~~~~~~~~~~~~--~~g~~~~~~~~~~~~~~~~G~e-~~~~~~~E~k~P~k~ip~a~~~s~~~~~ 304 (578)
..++..++++++.+..+.+.+++.+.. +.++.++..++...+++| |+| ......+|.||++|++||+++.+..++.
T Consensus 145 ~~~l~~l~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~f-g~~~~i~~~~~~~~~~~k~i~raii~g~~i~~ 223 (381)
T TIGR00837 145 FGKIIAFALVFSGLLPHVKGDLLLDVALDTSYWPYILSALPVCLTSF-GFHGNVPSLYKYYDGNVKKVKKSILIGSAIAL 223 (381)
T ss_pred HHHHHHHHHHHHHHHhhccHHHHhcCccccccHHHHHHHHHHHHHHH-HcccccHHHHHHhccCHHHHHHHHHHHHHHHH
Confidence 999998888888777776666654431 235667777888888888 665 5888899998779999999999999999
Q ss_pred HHHHHHHHHHhccccccccC-------CCChHHHHHHH-cChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 008094 305 ALYVGVSLVLTGMVPYKFLD-------EDAPLSDAFAS-RGLKYVSVLISFGAVAGLTTTLLVGLYVQSRLYLGLGRDGL 376 (578)
Q Consensus 305 i~y~~~~~~~~~~~~~~~~~-------~~~p~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~~ 376 (578)
++|++......+..|.+++. +.++..+.++. .++++...++.++..+++.++.++...+.++.
T Consensus 224 ~lY~l~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~al~tS~~g~~l~~~d~--------- 294 (381)
T TIGR00837 224 VLYILWQLATMGNLPRSEFLPIIAKGGNLDGLVNALQGVLKSSAIELALELFSNFALASSFLGVTLGLFDY--------- 294 (381)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHcCCChHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------
Confidence 99999999999999988763 12456667766 46677788889999999999999888777743
Q ss_pred CchhhhhhcCCCCcchhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHH
Q 008094 377 LPSIFAKVHPKRHTPVHSQVWVGIVAGILAGLFNVRVLSHILSVGTLTGYSVVSACV 433 (578)
Q Consensus 377 lP~~~~~~~~r~~~P~~ail~~~~i~~i~~~~~~~~~l~~~~~~~~l~~y~~~~~~~ 433 (578)
+++.+++.|++++ |..+.++..+...++..+.....+..+...+....+....+..
T Consensus 295 l~~~~~~~~~~~~-~~~~~~~~~~~pl~~a~~~p~~~~~~l~~~G~~~~~~~~~~p~ 350 (381)
T TIGR00837 295 LADLFKFDDSKKG-RFKTGLLTFLPPLVFALFYPEGFLYAIGYAGLAATIWAVIIPA 350 (381)
T ss_pred HHHHhCCCcccCC-CchhhhhhHHhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555444434 6677777777777777666666666666666555444444333
|
aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli. |
| >KOG2082 consensus K+/Cl- cotransporter KCC1 and related transporters [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3e-27 Score=241.86 Aligned_cols=419 Identities=14% Similarity=0.180 Sum_probs=319.4
Q ss_pred HHHHHhhhhhhhhHHHHHHHHHhhhCc-HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccchhhhhHHHhchhhHHHHHH
Q 008094 66 LVLIGVGASVGAGIFVVTGTVARDAGP-GVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNELTAFLVFA 144 (578)
Q Consensus 66 ~~~~~i~~~ig~g~~~~~~~~~~~~G~-~~~~~~ii~~l~~~~~a~~~ael~~~~P~~~GG~y~~~~~~~g~~~g~~~g~ 144 (578)
+..=.+-.+.|.-.|....++.+.+|. ..++..++++.+.++++.+++.+++.--.++||.|..++|.+||.+|-.+|.
T Consensus 120 VyLPclQnIlGVilFiRLtWvVG~AGv~q~fllv~iCC~cTmLTaISmSAIATNGVVpaGGsYfmISRsLGPEFGgAVGl 199 (1075)
T KOG2082|consen 120 VYLPCLQNILGVILFIRLTWVVGMAGVGQGFLLVFICCLCTMLTAISMSAIATNGVVPAGGSYFMISRSLGPEFGGAVGL 199 (1075)
T ss_pred eeHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCeeEEEecccCccccceeee
Confidence 333445577888899999999999998 4888888999999999999999999966668999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCccccCCCc-cccccchhhhHHHHHHHHHHHHHHHhhhHHHHHHH
Q 008094 145 QLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGE-EFLGGTLSINILAPILLALLTIVLCWGVGESSVLN 223 (578)
Q Consensus 145 ~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~ 223 (578)
++.++..+..+.+..+..+.+.... +|....-- ....+ +..+......+.+.+++++..++...|+|...++.
T Consensus 200 cFYLgtT~AaaMYIlGaVEi~L~Yi--~P~aaIf~----~~~a~~~~~am~nnlRvYGT~~Li~m~lIVf~GVK~Vnk~A 273 (1075)
T KOG2082|consen 200 CFYLGTTVAAAMYILGAVEIFLTYI--FPAAAIFG----AEDAHDEAAAMLNNLRVYGTVFLILMALIVFVGVKFVNKFA 273 (1075)
T ss_pred hhhhhhHHHHHHHHHhHHHHHHHHH--ccHhhhcC----ccccccchhhhhcceehHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999888876532 23211000 00000 11122334457788888999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhcc------------------------------cccCC------------------------
Q 008094 224 SCMTVVKVIIVIVVIFAGAFE------------------------------VDVSN------------------------ 249 (578)
Q Consensus 224 ~~~~~~~~~~~~~~~i~~~~~------------------------------~~~~~------------------------ 249 (578)
.++..+.++.++.+...++-. .+..+
T Consensus 274 ~vfL~CVILSIlaiyaG~i~~~~~~~~~~vC~lgnr~L~~~~~d~c~k~~~~~~~~~~~~L~~~fC~~~~~~~~c~~y~~ 353 (1075)
T KOG2082|consen 274 PVFLACVILSILAIYAGGIKSIFDPPGFPVCMLGNRLLSSSIFDNCSKTETVDNDNVTSFLWGLFCNSNNDSATCDEYFS 353 (1075)
T ss_pred HHHHHHHHHHHHHHHHhhhhhccCCCCCeeEEecceeccccccccchhhhccccccHHHHHHHhhCCCCCCCcccccccc
Confidence 988888877777665543210 00000
Q ss_pred ---------CCC-------------C------CC---------C---------C-hHHHHHHHHHHHhhccchHHHhhhh
Q 008094 250 ---------WSP-------------F------AP---------N---------G-FKEILTGATVVFFAYVGFDAVANSA 282 (578)
Q Consensus 250 ---------~~~-------------~------~~---------~---------g-~~~~~~~~~~~~~~~~G~e~~~~~~ 282 (578)
+.+ + .+ + + -.+|..-+.+-+.+.+|.-+.++.+
T Consensus 354 ~nnvt~i~GipG~a~g~~~eNlws~Ylekg~~v~~g~~~~~~~~~~~~~~V~~Di~tSFtlLvgIfFPsVTGImaGSNrS 433 (1075)
T KOG2082|consen 354 KNNVTEIQGIPGLASGVFKENLWSAYLEKGEIVEYGVPSADIADSSGHPYVVQDITTSFTLLVGIFFPSVTGIMAGSNRS 433 (1075)
T ss_pred cccceeecCCcchhhhhhhhhhhHhhhcccccccCCCCCCCcccccCCCceeecchhhHHHHHHhhccccceeeecCCCC
Confidence 000 0 00 0 0 0123333334556789999999999
Q ss_pred hhhcCCCCChhHHHHHHHHHHHHHHHHHHHHHhccccccccCCCChHHHHHHH-----cChhHHHHHHHHHHHHHHHHHH
Q 008094 283 EESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLDEDAPLSDAFAS-----RGLKYVSVLISFGAVAGLTTTL 357 (578)
Q Consensus 283 ~E~k~P~k~ip~a~~~s~~~~~i~y~~~~~~~~~~~~~~~~~~~~p~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~ 357 (578)
++.|||+|++|.+.+.+.+....+|+...+.+..++....+.+. +.+.... ...-+-.+++.++.++|.+++.
T Consensus 434 GDLkDaQkSIPvGTI~AilTTS~vYlssv~lFGa~i~~~vLRDK--fG~sv~g~lVva~laWPsPwVi~IGsFlST~GAg 511 (1075)
T KOG2082|consen 434 GDLKDAQKSIPVGTIAAILTTSFVYLSSVVLFGACIEGVVLRDK--FGQSVGGNLVVATLAWPSPWVIVIGSFLSTCGAG 511 (1075)
T ss_pred ccccchhhcCchhhhHHHHHHHHHHHHHHHHHHHhhcchhhhhh--hhhhccCcEEEEEecCCCceeeehhHHHHHhHHH
Confidence 99999999999999999999999999999988888764433221 1111110 0011123567788999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCc--hhhhhhcCCCCcchhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008094 358 LVGLYVQSRLYLGLGRDGLLP--SIFAKVHPKRHTPVHSQVWVGIVAGILAGLFNVRVLSHILSVGTLTGYSVVSACVIA 435 (578)
Q Consensus 358 ~~~~~~~sR~l~~~a~d~~lP--~~~~~~~~r~~~P~~ail~~~~i~~i~~~~~~~~~l~~~~~~~~l~~y~~~~~~~~~ 435 (578)
+.++.+++|++++.|||+.+| +.|+|.. +++-|.+|++++.+++.+..++.+++.+..+.+++++.+|..++++...
T Consensus 512 LQsLtgAPRLLQAIAkD~IiPfL~~F~~~~-~ngEPt~aLlLT~~Ice~gILigslD~iApilsmFFLMCY~fVNLaCav 590 (1075)
T KOG2082|consen 512 LQSLTGAPRLLQAIAKDDIIPFLAPFGHGK-ANGEPTWALLLTAIICECGILIGSLDLIAPILSMFFLMCYLFVNLACAV 590 (1075)
T ss_pred HhhhcCcHHHHHHHhhcCccchhhhhcccc-CCCCccHHHHHHHHHHHhhheeechhHHHHHHHHHHHHHHHHHhHHHHH
Confidence 999999999999999999999 9999988 8899999999999999888889999999999999999999999999998
Q ss_pred heecCCCCCCCccccchhhhhhHHHHHHHHHhhhhcchhhccchhHHHHHHHHHHHHHHHHHHHhccCCCCCCCcccccc
Q 008094 436 LRWKDRTSRNDSSRLTSAWRQGVICLIIIACCGFGAGLFYRINASYILLIVAVVIAVLASAMLCLRHGYSDPPGFSCPGV 515 (578)
Q Consensus 436 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 515 (578)
...-+.+.+||+.++++|
T Consensus 591 qtLLrtPnWRPRfkyyHW-------------------------------------------------------------- 608 (1075)
T KOG2082|consen 591 QTLLRTPNWRPRFKYYHW-------------------------------------------------------------- 608 (1075)
T ss_pred HHHhcCCCCCccchhhhh--------------------------------------------------------------
Confidence 888888889988777777
Q ss_pred chHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHhhhcccc
Q 008094 516 PLLPAVSIFFNLFLFAQLHYEAWWRFVILSFISIGLYAFYGQYH 559 (578)
Q Consensus 516 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~~~~~~ 559 (578)
.++.++...|+++|+..+ |-...+-+++..++|-+-.+|-
T Consensus 609 -~LSflG~sLC~~iMF~~S---WyyAlvAm~~a~~IYKYiEykG 648 (1075)
T KOG2082|consen 609 -SLSFLGASLCLAIMFISS---WYYALVAMLIAGVIYKYIEYKG 648 (1075)
T ss_pred -HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhhcc
Confidence 678888888888877766 5566677788888887544443
|
|
| >KOG1288 consensus Amino acid transporters [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.8e-26 Score=232.25 Aligned_cols=381 Identities=18% Similarity=0.224 Sum_probs=293.4
Q ss_pred ccChhHHHHHHhh-hhhhhhHHHHHHHHHhhhCc-HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccchhhhhHHHhchh
Q 008094 60 RLGLFELVLIGVG-ASVGAGIFVVTGTVARDAGP-GVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNEL 137 (578)
Q Consensus 60 ~l~~~~~~~~~i~-~~ig~g~~~~~~~~~~~~G~-~~~~~~ii~~l~~~~~a~~~ael~~~~P~~~GG~y~~~~~~~g~~ 137 (578)
+|+.++-++.-.. .+...=+|...|.+.+++|- -.++-++++..+.+++.++.+.++++--.+.||.|+.++|.+||.
T Consensus 66 kLgTf~GvfvPtaLsmfSiLlFLR~gfIvG~aGll~Tll~lliaY~I~llTvlSicAIsTNGaV~GGGaYymISRsLGpE 145 (945)
T KOG1288|consen 66 KLGTFEGVFVPTALSMFSILLFLRFGFIVGQAGLLKTLLMLLIAYAILLLTVLSICAISTNGAVRGGGAYYMISRSLGPE 145 (945)
T ss_pred cccceeeEechhHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHHHHHhhhccCCceecCceEEEEEcccCcc
Confidence 7877775444333 34445578889999999998 588888999999999999999999998887999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCccccCCCccccccchhhhHHHHHHHHHHHHHHHhhhH
Q 008094 138 TAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGVG 217 (578)
Q Consensus 138 ~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~ 217 (578)
+|--.|..+.++.++.++.+..++.+-+.+.++-- ... ..+.+....+.+...+...+++.+...+++.|..
T Consensus 146 fGGSIGllFf~anV~~~am~isG~vE~il~nfG~~---a~g-----~sg~~~lP~g~ww~fly~t~vl~l~~~vc~lGsa 217 (945)
T KOG1288|consen 146 FGGSIGLLFFVANVFNCAMNISGFVEPILDNFGKE---AQG-----ASGSQFLPDGYWWRFLYTTLVLALCLIVCLLGSA 217 (945)
T ss_pred cCCeeeehhhHHHHhcchhhhhhhhHHHHHhcCcc---ccC-----CcccccCCCCcchhhHHHHHHHHHHHHHHHhhHH
Confidence 99999999999999999999999888877665411 000 0111223345556667788888888888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhccccc---------------------CC--CC------------CCCCCChHHHH
Q 008094 218 ESSVLNSCMTVVKVIIVIVVIFAGAFEVDV---------------------SN--WS------------PFAPNGFKEIL 262 (578)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---------------------~~--~~------------~~~~~g~~~~~ 262 (578)
..+|..++..+...+.+....+-.++.... ++ |+ .....+..+|.
T Consensus 218 lfAkas~i~f~~is~s~~si~iS~ifvgp~~~~ip~~~~p~~sn~t~~~~yTG~~~sTl~dNL~~~yt~dyt~~~~~~F~ 297 (945)
T KOG1288|consen 218 LFAKASNILFVVISVSLFSIPISFIFVGPFKDPIPVPGDPILSNTTLFVHYTGLSWSTLMDNLGSHYTEDYTGGGYEDFA 297 (945)
T ss_pred HHHhhhhhhhhHHHHHHhhhhheeEEeccccCCCCCCCCccccCcceeeeecCccHHHHhhhhhhhhcccccCCCceehh
Confidence 999987776655444444433322221110 00 10 11112333555
Q ss_pred HHHHHHHhhccchHHHhhhhhhhcCCCCChhHHHHHHHHHHHHHHHHHHHHHhccccccccCCCChHHHHHHHcChhHHH
Q 008094 263 TGATVVFFAYVGFDAVANSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLDEDAPLSDAFASRGLKYVS 342 (578)
Q Consensus 263 ~~~~~~~~~~~G~e~~~~~~~E~k~P~k~ip~a~~~s~~~~~i~y~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 342 (578)
..+...+-+..|.-+.++|++|.|+|.|.+||+.+.++....++|+++.+.+....|...+.++-. ++..... ..
T Consensus 298 ~~FgV~F~g~tGimAGAnMSgELk~PSkSIP~GTl~ava~Tf~~Yvl~~flm~~t~~r~~Lq~dy~---v~~~isl--~p 372 (945)
T KOG1288|consen 298 STFGVFFPGTTGIMAGANMSGELKAPSKSIPKGTLSAVAFTFFVYVLVIFLMGCTVPRTLLQNDYD---VMMHISL--HP 372 (945)
T ss_pred hhheeeeccchhhhcCCCcCccccCccccCCccchHHHHHHHHHHHHHHHHhccCcchHHhhhchh---heeeccc--cc
Confidence 555666778889999999999999999999999999999999999999999998888876655432 2222221 12
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCc--hhhhhhcCCCCcchhHHHHHHHHHHHHHhhcCHHHHHHHHHH
Q 008094 343 VLISFGAVAGLTTTLLVGLYVQSRLYLGLGRDGLLP--SIFAKVHPKRHTPVHSQVWVGIVAGILAGLFNVRVLSHILSV 420 (578)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP--~~~~~~~~r~~~P~~ail~~~~i~~i~~~~~~~~~l~~~~~~ 420 (578)
.++.++.+.+.+.+..+.+.++||++.++|||+.+| ..|+|...+.+.|+.|+.+++.++-+..+..+++.+..+.++
T Consensus 373 ~fi~iGi~sttlfss~s~liGasrvL~alakD~lfg~ll~fak~~s~~~nP~~av~vtw~lvqlvll~g~~N~iA~~it~ 452 (945)
T KOG1288|consen 373 PFILIGILSTTLFSSMSGLIGASRVLEALAKDDLFGGLLFFAKGSSYDGNPYVAVGVTWLLVQLVLLWGDINKIASMITM 452 (945)
T ss_pred hHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcccchhhheeeeccccCCCceeeeeHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 345566666777777788999999999999999999 678888889999999999999999988888899999999999
Q ss_pred HHHHHHHHHHHHHhhheecCCCCCCCccccchh
Q 008094 421 GTLTGYSVVSACVIALRWKDRTSRNDSSRLTSA 453 (578)
Q Consensus 421 ~~l~~y~~~~~~~~~~r~~~~~~~~~~~~~~~~ 453 (578)
.++++|..++++.+.++....+..||..++.+|
T Consensus 453 ~FLlty~~vNLacl~LeissAPNFRPtFkyF~w 485 (945)
T KOG1288|consen 453 TFLLTYGAVNLACLLLEISSAPNFRPTFKYFNW 485 (945)
T ss_pred HHHHHHHHHHHHHHHhhhccCCCCCchhhhhhH
Confidence 999999999999999999988888887666555
|
|
| >TIGR00912 2A0309 spore germination protein (amino acid permease) | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.3e-21 Score=201.44 Aligned_cols=287 Identities=17% Similarity=0.247 Sum_probs=232.1
Q ss_pred cccChhHHHHHHhhhhhhhhHHHHHHHHHhhhCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccchhhhhHHHhchhh
Q 008094 59 RRLGLFELVLIGVGASVGAGIFVVTGTVARDAGPGVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNELT 138 (578)
Q Consensus 59 r~l~~~~~~~~~i~~~ig~g~~~~~~~~~~~~G~~~~~~~ii~~l~~~~~a~~~ael~~~~P~~~GG~y~~~~~~~g~~~ 138 (578)
++++.+|..++.++.++|+|++..|+...+.+|+.++++++++++.+++.+++++|+++++|+ . +.+.|.++.+||..
T Consensus 1 ~~is~~q~~~l~~~~~iG~gil~~P~~~~~~a~~~~wi~~ll~~~~~~~~~~~~~~l~~~~p~-~-~~~~~~~~~~Gk~~ 78 (359)
T TIGR00912 1 DKISSKQLIFLISSTMIGSGLLTLPALVSQSAGQDGWISIILGGLIIIFLLCLMIKIMSKFPE-K-NFSEILSKYLGKIL 78 (359)
T ss_pred CcCcHHHHHHHHHHHHHHHHHHhhhHHHHhccCCCeeHHHHHHHHHHHHHHHHHHHHHHHCCC-C-CHHHHHHHHhhHHH
Confidence 368999999999999999999999999999899989999999999999999999999999998 5 69999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCccccCCCccccccchhhhHHHHHHHHHHHHHHHhhhHH
Q 008094 139 AFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGVGE 218 (578)
Q Consensus 139 g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~ 218 (578)
|++.+|.+++......+......++++.... .| ++|.| ++...++++....+..|.+.
T Consensus 79 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--l~----~tp~~----------------~~~l~~l~~~~~~~~~Gi~~ 136 (359)
T TIGR00912 79 GRLLSILFILYFFLIAAYLIRIFADFIKTYL--LP----RTPII----------------VIIILIIIVSIYIVRKGIEV 136 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cC----CCCHH----------------HHHHHHHHHHHHHHHccHHH
Confidence 9999999887777666666666666665432 12 23332 36667777788889999999
Q ss_pred HHHHHHHHHHHHHHH-HHHHHhhhhcccccCCCCCCCCCChHHHHHHHH-HHHhhccchHHHhhhhhhhcCCCCChhHHH
Q 008094 219 SSVLNSCMTVVKVII-VIVVIFAGAFEVDVSNWSPFAPNGFKEILTGAT-VVFFAYVGFDAVANSAEESKKPQRDLPIGI 296 (578)
Q Consensus 219 ~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~G~e~~~~~~~E~k~P~k~ip~a~ 296 (578)
.+|++.+...+.+.. ++++........+.++..|..++|+.++..+.. ...++|.|+|......+|.||| |+.||++
T Consensus 137 i~r~~~i~~~~~i~~~~~il~~~~~~~~~~~~l~P~~~~g~~~~~~~~~~~~~~~f~g~~i~~~~~~~~~~~-~~~~k~~ 215 (359)
T TIGR00912 137 LLRTAEILLIIFLILFILVLILLAPKLGNIKNLLPVLENGLSPILKGAYPVVTFAFGEIEIFFLLFPLLSKK-KKIKKSI 215 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccHHHccCccccCcHHHHhhhhHHhhhhhHHHHHHHHHHHHhCCh-hhhHHHH
Confidence 999999999888776 344444444455677778888888888888776 8899999999999999999997 5699999
Q ss_pred HHHHHHHHHHHHHHHHHHhccccccccC-CCChHHHHHHHcChh-H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008094 297 LGSLLICAALYVGVSLVLTGMVPYKFLD-EDAPLSDAFASRGLK-Y---VSVLISFGAVAGLTTTLLVGLYVQSRLYLG 370 (578)
Q Consensus 297 ~~s~~~~~i~y~~~~~~~~~~~~~~~~~-~~~p~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~ 370 (578)
..+..+++++|.+......+..+.++.+ ...|..+..+....+ . ...++....+.+.+.....+++..++.+-+
T Consensus 216 ~~~~~~~~~ly~~~~~~~i~~lg~~~~~~~~~P~~~~~~~i~~~~f~eR~e~~~~~~w~~~~f~~~~~~~~~~~~~~~~ 294 (359)
T TIGR00912 216 IKAIIIGVLLYILTTFVSISVFGGNVTKNLYWPTLELIKLINIGDFIERFELIVMTFWVFIIFVKIAFYLYIAVKGLSK 294 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHheecHHHhhhhcccHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999888775 456888888887543 2 233444455566666666677777776544
|
This model describes spore germination protein GerKB and paralogs from Bacillus subtilis, Clostridium tetani, and other known or predicted endospore-forming members of the Firmicutes (low-GC Gram positive bacteria). Members show some similarity to amino acid permeases. |
| >KOG2083 consensus Na+/K+ symporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.87 E-value=8.9e-21 Score=192.32 Aligned_cols=366 Identities=18% Similarity=0.212 Sum_probs=288.1
Q ss_pred ccccChhHHHHHHhh-hhhhhhHHHHHHHHHhhhCc-HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccchhhhhHHHhc
Q 008094 58 LRRLGLFELVLIGVG-ASVGAGIFVVTGTVARDAGP-GVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFN 135 (578)
Q Consensus 58 ~r~l~~~~~~~~~i~-~~ig~g~~~~~~~~~~~~G~-~~~~~~ii~~l~~~~~a~~~ael~~~~P~~~GG~y~~~~~~~g 135 (578)
+-++|||+-++...- ++.|.-+|...+++.+++|. ..++...++..+..+++++..-++++--.|+||.|..+++.+|
T Consensus 27 ~v~fg~~~gv~~~cmlni~gv~lflrl~wivgqagi~~~~~ii~~~~~vt~it~lSa~~I~t~~~vk~Gg~yflis~slg 106 (643)
T KOG2083|consen 27 PVLFGWWDGVFVRCMLNIFGVILFLRLGWIVGQAGIGNSVLIIGLTTVVTLITVLSAIAIVTRGQVKSGGVYFLISRSLG 106 (643)
T ss_pred ceEEeeeehhhhhhhHHHHHHHHhhhhhheeecchhhhhHHHHHHHHHHHHHHHHhHheeeecceeccCcEEEEEEeccc
Confidence 456999997665433 56777789999999999998 4888888899999999999999999988889999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCccccCCCccccccchhhhHHHHHHHHHHHHHHHhh
Q 008094 136 ELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWG 215 (578)
Q Consensus 136 ~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g 215 (578)
|..|-..|..+.++..++++.+..++++.+..++.... .+.- .-++.+..+++..+|.-|
T Consensus 107 ~efggsigiIy~f~~aVa~am~~vgfaEsv~~l~~~~s-------~~~i-------------~gi~~vt~~ill~i~~ag 166 (643)
T KOG2083|consen 107 PEFGGSIGIIYAFANAVATAMYVVGFAESVAHLFETES-------KEMI-------------DGIGSVTVLILLAINVAG 166 (643)
T ss_pred ccccchhHHHHHHHHHHHHHHhhhhHHHHHHHHHHhcc-------HHHh-------------cchhHHHHHHHHHhhhcc
Confidence 99999999999999999999999999999999876421 1111 127778888889999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhcccc-c-------------CCCCC-CCCCChHHHHHHHHHHHhhccchHHHhh
Q 008094 216 VGESSVLNSCMTVVKVIIVIVVIFAGAFEVD-V-------------SNWSP-FAPNGFKEILTGATVVFFAYVGFDAVAN 280 (578)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~-------------~~~~~-~~~~g~~~~~~~~~~~~~~~~G~e~~~~ 280 (578)
.+...|.|.++..+.++.+.-+.+..++..+ . +|..+ +. ++ ..|+..+...+.+.+|.-+.++
T Consensus 167 ~~w~~k~q~~ll~il~iai~~f~~gs~~~~~~~~~g~~~~~a~~~~~n~~~~~~-~~-~tfF~vf~vfFpaatgilaG~n 244 (643)
T KOG2083|consen 167 VEWEAKLQIVLLLILLIAIADFLVGSFFSPNEFSSGFFGYRADIFVENLNPDID-PG-YTFFSVFAVFFPAATGILAGAN 244 (643)
T ss_pred chhHHHHHHHHHHHHHHHHHHhhhhhccChhhhcccccccchhhcccCCCCCcC-CC-CceEeeeeeecchhhhhhcccc
Confidence 9999999999888877777666665554322 0 01111 11 22 1555566667888999999999
Q ss_pred hhhhhcCCCCChhHHHHHHHHHHHHHHHHHHHHHhccccccccCC-----CC----hHH---HHHHHcChhHHHHHHHHH
Q 008094 281 SAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLDE-----DA----PLS---DAFASRGLKYVSVLISFG 348 (578)
Q Consensus 281 ~~~E~k~P~k~ip~a~~~s~~~~~i~y~~~~~~~~~~~~~~~~~~-----~~----p~~---~~~~~~~~~~~~~~~~~~ 348 (578)
++++.|+|++++|++.+.+......+|+........+.-.+.+.. +. .+. +..+.. ......+..+
T Consensus 245 isGdL~~Pq~~IP~GaL~Ai~vst~~yl~~i~~~Ga~~~r~~~~~~~~~~~~~c~~gl~~~~qv~smv--S~~~Pl~~AG 322 (643)
T KOG2083|consen 245 ISGDLKDPQKAIPLGALLAIGVSTLLYLIFIADLGATPVRDALENWNDTSTKSCPIGLTNYLQVMSMV--STFGPLITAG 322 (643)
T ss_pred ccCCCCCchhhcccchhhhhhhhhhhhhhhhhhcccHHHHHHhccchhhccCCCccchHHHHHHHHhH--hhcccchhhH
Confidence 999999999999999999999999999888776665543332211 11 122 222222 1112234555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCc--hhhhhhcCCCCcchhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHH
Q 008094 349 AVAGLTTTLLVGLYVQSRLYLGLGRDGLLP--SIFAKVHPKRHTPVHSQVWVGIVAGILAGLFNVRVLSHILSVGTLTGY 426 (578)
Q Consensus 349 ~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP--~~~~~~~~r~~~P~~ail~~~~i~~i~~~~~~~~~l~~~~~~~~l~~y 426 (578)
...+..++..+++.++.++++++++|+..| .+++|-.++++.|+++..+....+..+..+.+.+.+..+.+...+.+|
T Consensus 323 i~~a~LSsalsslVsap~V~QaL~kd~~yp~i~~f~KgyGkn~~Plrg~~l~~~~av~fi~igeln~iapiis~FfL~sy 402 (643)
T KOG2083|consen 323 ILAAELSSALSSLVSAPKVLQALCKDSLYPSILFFAKGYGKNKEPLRGYLLTFLTAVSFIAIGELNIIAPIISNFFLLSY 402 (643)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHhcCCCccHHHHHccCCccccchHHHHHHHHhHheeEEecccceeccchhhhhhhhh
Confidence 566777778899999999999999999999 788999999999999999998888777778889999999999999999
Q ss_pred HHHHHHHhhheecCCCCCCCc
Q 008094 427 SVVSACVIALRWKDRTSRNDS 447 (578)
Q Consensus 427 ~~~~~~~~~~r~~~~~~~~~~ 447 (578)
.+...+.+..+....+.+||.
T Consensus 403 Alinf~~f~aSl~~s~~wRp~ 423 (643)
T KOG2083|consen 403 ALINFSCFHASLAISEGWRPS 423 (643)
T ss_pred hccchhhhhhhhccccccCch
Confidence 999999998888888777654
|
|
| >PHA02764 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.6e-19 Score=167.95 Aligned_cols=277 Identities=18% Similarity=0.252 Sum_probs=174.0
Q ss_pred CCCCCcccccChhHHHHHHhhhhhhhhHHHHHHHHH-hhhCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccchhhhh
Q 008094 52 NDGEGLLRRLGLFELVLIGVGASVGAGIFVVTGTVA-RDAGPGVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYA 130 (578)
Q Consensus 52 ~~~~~l~r~l~~~~~~~~~i~~~ig~g~~~~~~~~~-~~~G~~~~~~~ii~~l~~~~~a~~~ael~~~~P~~~GG~y~~~ 130 (578)
++.++|.|+.+.+|.+...++.+-+......+.... ...|+..+++|+++++++++.+++|+|+++++|+ +||.|.|.
T Consensus 5 ReSSGLVREvs~lDAF~~Nl~~m~~Gi~Is~~~l~a~l~pG~nlLLAWLLGGLlALPgAL~YAELGSAmPr-AGGdYVYI 83 (399)
T PHA02764 5 RKSSGIIKSFNILDIFSINLLYMGILSGISYPLFVSSLLKNVNLLFAILIGAVFEIPLLLMYYKLTTKFPL-NGGDYAYI 83 (399)
T ss_pred hhcCCceeeccHHHHHHHHHHhhccchhHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhCCC-CCceEEEh
Confidence 467789999999999998888763222112122222 2245568899999999999999999999999999 99999999
Q ss_pred HHHhchhhHHHHHHHHHHHHHHHHHHHHHHHH-HH-HHHHHhhcccccCCCCccccCCCccccccchhhhHHHHHHHHHH
Q 008094 131 YTAFNELTAFLVFAQLMLDYHIGAASIARSLA-SY-VVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALL 208 (578)
Q Consensus 131 ~~~~g~~~g~~~g~~~~l~~~~~~a~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (578)
+|++||..|+..||..|+.+..+.+..+-.-. +. ++..++++ .+. .-....
T Consensus 84 SRAFGP~~GFLvG~a~WLtl~~G~Pal~~l~~~~~~i~~~~~~f--------------------------~~~-~s~~~i 136 (399)
T PHA02764 84 RTAFSSKFYTIFGISLWLTYVLSQPILGDLVLLNFNIQNQFEQF--------------------------LIV-ESLFPI 136 (399)
T ss_pred HHhhCccHHHHHHHHHHHHHHhhcchhhheeeeeeeeHHHHHHH--------------------------HHH-HHHHHH
Confidence 99999999999999999998877664432211 00 00111000 011 111112
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCCCCCCCCCChH-HHHHHHHHHHhhccchHHHhhhhhhhcC
Q 008094 209 TIVLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEVDVSNWSPFAPNGFK-EILTGATVVFFAYVGFDAVANSAEESKK 287 (578)
Q Consensus 209 ~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~G~e~~~~~~~E~k~ 287 (578)
..+-..|.+..+|...+......+ +.+.......+.. .++| ..+ ....+...-.-+|.=.|+..++++|.||
T Consensus 137 ~~~i~~~~~~~~~~v~il~~a~~i---~aif~~~~s~n~~-~~~f---~~snt~~~a~~~~l~~~~fi~a~~y~~~ei~n 209 (399)
T PHA02764 137 VLLIIANKKIYAKIVDILAIAQII---IAIFIAFKSFNFQ-YQNF---TISNTLLSALLFDLSAFIFINAISYIAGEIKN 209 (399)
T ss_pred HHHHHcccHHHHHHHHHHHHHHHH---HHHHhhccceeEE-Ecce---eehHHHHHHHHHHHHHHHHhccHHHHHHHhhc
Confidence 223334566667765554443333 1111111111111 0111 111 3444555555566667999999999999
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHhccccccccCCCChHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008094 288 PQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLDEDAPLSDAFASRGLKYVSVLISFGAVAGLTTTLLVGLYVQSRL 367 (578)
Q Consensus 288 P~k~ip~a~~~s~~~~~i~y~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~ 367 (578)
-+|....+-..|...+.++-++... ++ +. +.........++-+....--.||+
T Consensus 210 ~~k~~~~gyf~s~~~~~~~~ii~sy-------------~n-~~-------------il~~~~~~w~~~y~~~~~~~~srl 262 (399)
T PHA02764 210 IKKSSMIGYFVSYGIVAILSIIDSY-------------SN-LN-------------ILFALMPIWFFSYMPIANKIQSRL 262 (399)
T ss_pred chhhhhhhhHHHHHHHHHHHHHHhh-------------hh-HH-------------HHHHHHHHHHHhheeeecchHHHH
Confidence 9999888888887776665443331 10 00 111112333344444445568999
Q ss_pred HHHHhhcCCCchhhhhhcCCCCcch
Q 008094 368 YLGLGRDGLLPSIFAKVHPKRHTPV 392 (578)
Q Consensus 368 l~~~a~d~~lP~~~~~~~~r~~~P~ 392 (578)
+++|+.|+.+|+.|+|.|| ++|+
T Consensus 263 i~~~~fd~~lpe~f~k~~~--nv~~ 285 (399)
T PHA02764 263 IQTMSFDKVLPEKFSKINP--NVLL 285 (399)
T ss_pred HHHHHhhhhchHHHhccCC--Ccee
Confidence 9999999999999999984 7887
|
|
| >TIGR00796 livcs branched-chain amino acid uptake carrier | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.5e-17 Score=168.45 Aligned_cols=336 Identities=16% Similarity=0.120 Sum_probs=249.2
Q ss_pred HhhhhhhhhHHHHHHHHHhhhCcH---HHHHHHHHHHHHHHHHHHHHHHhhcCCCCccchhhhhHHHhchhhHHHHHHHH
Q 008094 70 GVGASVGAGIFVVTGTVARDAGPG---VTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNELTAFLVFAQL 146 (578)
Q Consensus 70 ~i~~~ig~g~~~~~~~~~~~~G~~---~~~~~ii~~l~~~~~a~~~ael~~~~P~~~GG~y~~~~~~~g~~~g~~~g~~~ 146 (578)
-++.-+|+|-+..|+..-+++|.. ++++|+++++..-+.+++ +.|+ +||.|++..+.+||..|++.+|..
T Consensus 4 lFamffGAGNlIfPp~lG~~aG~~~~~a~lgf~ltgV~lpllgl~------av~~-~gG~~~~l~~~~g~~f~~lf~~~~ 76 (378)
T TIGR00796 4 LFALFFGAGNIIFPPMLGLAAGEHVWTAALGFLLTGVGLPLLGLI------ALAL-VGGGYDSLSARIGKVFGILFTVIL 76 (378)
T ss_pred HHHHHHhhhHHhhhHHHHHHhCccHHHHHHHHHHHHHHHHHHHHh------eeee-cCCCHHHHHHHhChHHHHHHHHHH
Confidence 355668999999999988888752 678999999998887776 8998 899999999999999999999988
Q ss_pred HHHHHHHH-----HHHHHHHHHHHHHHHhhcccccCCCCccccCCCccccccchhhhHHHHHHHHHHHHHHHhhhHHHHH
Q 008094 147 MLDYHIGA-----ASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGVGESSV 221 (578)
Q Consensus 147 ~l~~~~~~-----a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~ 221 (578)
++..-... ++.+...+ +. |.+..+. ......+..+++..+..++++++.|...+
T Consensus 77 ~l~iGP~~aiPRtaa~s~e~~-----i~---p~~~~~~-------------~~~~l~i~siiff~i~~~l~~~~~k~~~~ 135 (378)
T TIGR00796 77 YLTIGPLFAIPRTATVSFEMG-----IA---PLLHSPT-------------SLLALFIFSLIFFAVVLLLSLNPSKLIDR 135 (378)
T ss_pred HHHHHhchhhhHHHHHHHHHH-----HH---hccCccc-------------chHHHHHHHHHHHHHHHHHHcCcccHHHH
Confidence 76543222 22222211 21 2211100 01122345566666667799999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcccccCCCCCCCCCCh-HHHHHHHHHHHhhcc-------chHHHhhhhh-hhcCCCCCh
Q 008094 222 LNSCMTVVKVIIVIVVIFAGAFEVDVSNWSPFAPNGF-KEILTGATVVFFAYV-------GFDAVANSAE-ESKKPQRDL 292 (578)
Q Consensus 222 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~-------G~e~~~~~~~-E~k~P~k~i 292 (578)
++++++.++++.++++++.++.+...+.-.+..+..- ..+..++.-..+++. |+-.+..+.+ |.|||+|+.
T Consensus 136 iGk~LTP~lLi~l~~lii~g~~~p~g~~~~~~~~~~~~~~f~~g~l~GY~TmD~laal~fg~iiv~~i~~~g~~~~~~~~ 215 (378)
T TIGR00796 136 VGKFLTPALLVTLLALIIKALLWPAGPILAASGAYASQQAFSKGFLEGYLTMDALAALVFGIIVVNAIRSRGVTKPKKIT 215 (378)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHcCCCCcCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHH
Confidence 9999999999999999999887633221111111111 357778888888888 9888888888 999999999
Q ss_pred hHHHHHHH-HHHHHHHHHHHHHHhccccccccC----CCChHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008094 293 PIGILGSL-LICAALYVGVSLVLTGMVPYKFLD----EDAPLSDAFASRGLKYVSVLISFGAVAGLTTTLLVGLYVQSRL 367 (578)
Q Consensus 293 p~a~~~s~-~~~~i~y~~~~~~~~~~~~~~~~~----~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~ 367 (578)
|+.+..+. ..+.+.|+...++..+..+.+... ..+...++.++..|+.+..++.+.+.++|+++.++...+++
T Consensus 216 ~~~i~~G~ia~i~l~~vY~~L~~lGa~~~~~~~~~~~~~~~l~~~a~~~~G~~G~~ll~i~v~lACLtT~iGli~~~a-- 293 (378)
T TIGR00796 216 KYTIKAGLIAAVLLAFIYLSLFYLGATSAAAAGDAVNGAQILSAYSQHLFGSLGSFLLGLIITLACLTTAVGLTTACS-- 293 (378)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCcHhhhcccCCcHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 99999998 666777888888888877765443 23466677888888999999999999999999999887744
Q ss_pred HHHHhhcCCCchhhhhhcCCCCcchhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHhh--heecCCCCCC
Q 008094 368 YLGLGRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGILAGLFNVRVLSHILSVGTLTGYSVVSACVIA--LRWKDRTSRN 445 (578)
Q Consensus 368 l~~~a~d~~lP~~~~~~~~r~~~P~~ail~~~~i~~i~~~~~~~~~l~~~~~~~~l~~y~~~~~~~~~--~r~~~~~~~~ 445 (578)
++|+|.++| +|+++.++...+...+.....++.+.++..-...+.|-......+. +|++.++.+|
T Consensus 294 -----------~~f~~~~~k--~~y~~~v~~~~l~s~~ia~~Gl~~Ii~~~~PvL~~~YP~~i~lill~ll~~~~~~~~~ 360 (378)
T TIGR00796 294 -----------EYFHKLVPK--LSYKTWVIVFTLFSFIVANLGLTQIISISIPVLMIIYPLAIVLILLSFLRKLWDSKRA 360 (378)
T ss_pred -----------HHHHHhcCC--CCHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 467777754 9999988888887777777899999998877777777666555555 6766666555
Q ss_pred Ccc
Q 008094 446 DSS 448 (578)
Q Consensus 446 ~~~ 448 (578)
+++
T Consensus 361 ~y~ 363 (378)
T TIGR00796 361 VYQ 363 (378)
T ss_pred eee
Confidence 553
|
transmembrane helical spanners. |
| >TIGR00814 stp serine transporter | Back alignment and domain information |
|---|
Probab=99.78 E-value=5.5e-16 Score=159.27 Aligned_cols=284 Identities=14% Similarity=0.081 Sum_probs=218.3
Q ss_pred HHHHhhhhhhhhHHHHHHHHHhhhCcHHHHHHHHHHHHHHHHHHHHHH------HhhcCCCCccchhhhhHHHhchhhHH
Q 008094 67 VLIGVGASVGAGIFVVTGTVARDAGPGVTISFLLAGAASVLNALCYAE------LASRFPAVVGGAYLYAYTAFNELTAF 140 (578)
Q Consensus 67 ~~~~i~~~ig~g~~~~~~~~~~~~G~~~~~~~ii~~l~~~~~a~~~ae------l~~~~P~~~GG~y~~~~~~~g~~~g~ 140 (578)
....+|+.+|+|++..|.. +|...+++++++++++++.++.++. +.+..| +.+.++++++.+||..|.
T Consensus 9 ~~~l~gt~IGaGiL~LP~~----ag~~G~i~~li~~l~~~pl~~~~~~ll~~~~l~~~~p--~~~i~~~~~~~fGk~~G~ 82 (397)
T TIGR00814 9 MLGLYGTAIGAGVLFLPIQ----AGLGGLWVLVLMAIIAYPLTYFGHRALARFLLSSKNP--CEDITEVVEEHFGKNWGI 82 (397)
T ss_pred HHHHHHHHHHHHHHHHHHH----HHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC--CCCHHHHHHHHcCHHHHH
Confidence 4467789999999999986 3555688888888877777666555 455555 489999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCccccCCCccccccchhhhHHHHHHHHHHHHHHHhhhHHHH
Q 008094 141 LVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGVGESS 220 (578)
Q Consensus 141 ~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~ 220 (578)
+.++.+++........++....+.+.+++... ...+.+. ..+..++++++...++..|.|...
T Consensus 83 ii~~lY~~~~~~i~~aY~~~~~~~~~~fl~~~--~~~~~p~---------------~~i~~lilv~il~~iv~~G~~~i~ 145 (397)
T TIGR00814 83 LITLLYFFAIYPILLIYSVAITNDSASFLVNQ--LGTAPPL---------------RGLLSLALILILVAIMSFGEKLLF 145 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCCCCcH---------------HHHHHHHHHHHHHHHHHhcHHHHH
Confidence 99999999988888888888888877765421 1111111 124666777777899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcccccCCCCCC--CCCChHHHHHHHHHHHhhccchHHHhhhh----hhhcCC---CCC
Q 008094 221 VLNSCMTVVKVIIVIVVIFAGAFEVDVSNWSPF--APNGFKEILTGATVVFFAYVGFDAVANSA----EESKKP---QRD 291 (578)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~--~~~g~~~~~~~~~~~~~~~~G~e~~~~~~----~E~k~P---~k~ 291 (578)
|++.++...+++.++++.+...++.+.++.... ....+..+..++...+|+|.|+|....++ +|.+|| +|+
T Consensus 146 r~~~il~~~~ii~l~~l~~~lip~~~~~~L~~~p~~~~~~~~i~~alpv~~~SF~~~~iIssl~~~~~~~~~~~~~~~~k 225 (397)
T TIGR00814 146 KIMGPLVFPLVLILVLLSLYLIPHWNGANLTTFPSFNGFLKTLWLTIPVMVFSFNHSPIISSFAISYREEYGDKEFAERK 225 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCHHHHhcCCcccchHHHHHHHHHHHHHHHHccccchHHHHHHHHHcCCcchHHHH
Confidence 999999999998888888888888777776422 22346678899999999999999999998 666655 577
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhccccccccC----CCChHHH-HHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008094 292 LPIGILGSLLICAALYVGVSLVLTGMVPYKFLD----EDAPLSD-AFASRGLKYVSVLISFGAVAGLTTTLLVGLYVQSR 366 (578)
Q Consensus 292 ip~a~~~s~~~~~i~y~~~~~~~~~~~~~~~~~----~~~p~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR 366 (578)
..|++..+..+..++|++..+.+....++++.. ++.+... ..+....+....+..+...++...+..+...+...
T Consensus 226 ~~k~i~~~~~i~~~~y~~~~~s~~~~l~~~~~~~a~~~nis~Ls~l~~~~~~~~i~~~~~~f~~~Ai~tSFlG~~lg~~e 305 (397)
T TIGR00814 226 CLRIMKGASLILVATVMFFVFSCVLSLSPAEAVAAKEQNISILSYLANHFNAAWISYAGPIVAIVAISKSFFGHYLGARE 305 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHcCcHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 889999999999999999999999999887652 2222233 33345667777777777777888888887777777
Q ss_pred HHHHHhh
Q 008094 367 LYLGLGR 373 (578)
Q Consensus 367 ~l~~~a~ 373 (578)
.+..+-+
T Consensus 306 ~l~~l~~ 312 (397)
T TIGR00814 306 GLNGIVL 312 (397)
T ss_pred HHHHHHH
Confidence 7777664
|
The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli. |
| >PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.1e-14 Score=150.02 Aligned_cols=292 Identities=17% Similarity=0.189 Sum_probs=233.8
Q ss_pred cccChhHHHHHHhhhhhhhhHHHHHHHHHhhhCc-HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccchhhhhHHHhchh
Q 008094 59 RRLGLFELVLIGVGASVGAGIFVVTGTVARDAGP-GVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNEL 137 (578)
Q Consensus 59 r~l~~~~~~~~~i~~~ig~g~~~~~~~~~~~~G~-~~~~~~ii~~l~~~~~a~~~ael~~~~P~~~GG~y~~~~~~~g~~ 137 (578)
|+-+.+...++.+|+.||+|++..|-.... +|- ...+..+++..++...++.++|...+.|+ ..+.-..+++.+||.
T Consensus 1 ~~~~~~~~~~li~GTaIGAGmLaLP~~~~~-~Gf~~~~~~l~~~w~~~~~s~l~~~E~~~~~~~-~~~~~~~a~~~lG~~ 78 (394)
T PF03222_consen 1 KNNSILGGVLLIAGTAIGAGMLALPIATAG-AGFLPSLILLLIAWPLMYYSGLLLAEVSLNTPE-GSSLTSMAEKYLGKK 78 (394)
T ss_pred CCchHHHHHHHHHHccHhHHHHHHHHHHHh-CchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CCCHHHHHHHHhChH
Confidence 345667888899999999999999986544 454 57788888899999999999999999998 888999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCccccCCCccccccchhhhHHHHHHHHHHHHHHHhhhH
Q 008094 138 TAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGVG 217 (578)
Q Consensus 138 ~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~ 217 (578)
.+++.+..+.+-......++..+.++.+.++++... +.+.+++ ....++.+++..+.+.|.|
T Consensus 79 g~~~~~~~~~~~~y~ll~AYisg~g~~~~~~l~~~~--~~~~~~~----------------~~~~~f~~i~~~iv~~g~~ 140 (394)
T PF03222_consen 79 GGIVIGISYLFLLYALLVAYISGGGSILSSLLGNQL--GTDLSPW----------------LSSLLFTIIFGGIVYFGTK 140 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHhc--CCCCcHH----------------HHHHHHHHHHHHHHHhhHH
Confidence 999999988887666777888888888888775321 1111222 3555666777777889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcccccCCCCCC--CCCChHHHHHHHHHHHhhccchHHHhhhhhhhcCCCCChhHH
Q 008094 218 ESSVLNSCMTVVKVIIVIVVIFAGAFEVDVSNWSPF--APNGFKEILTGATVVFFAYVGFDAVANSAEESKKPQRDLPIG 295 (578)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~--~~~g~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~P~k~ip~a 295 (578)
...|+++.+...+++.++++.+...++.+.++.... .+..+...+..+...+++|.-...+..+.+..++-+|++.|+
T Consensus 141 ~v~~~n~~lv~~~i~~~~~l~~~~~p~~~~~~L~~~~~~~~~~~~~~~~lPv~~~Sf~f~~ivPsl~~~~~~d~~k~~~a 220 (394)
T PF03222_consen 141 AVDRINRVLVFGMIISFIILVVYLIPHWNPSNLLDAPPSPSDWSYILPALPVLVFSFGFHNIVPSLVKYLGGDPKKIRKA 220 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcCHHHhhccccccccHHHHHHHHHHHHHHHHHHhhhHHHHHHhCccHHHHHHH
Confidence 999999999999999999998888888777765431 235677788899999999999999999999999778899999
Q ss_pred HHHHHHHHHHHHHHHHHHHhccccccccC----CC---ChHHHHHHH-cChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008094 296 ILGSLLICAALYVGVSLVLTGMVPYKFLD----ED---APLSDAFAS-RGLKYVSVLISFGAVAGLTTTLLVGLYVQSRL 367 (578)
Q Consensus 296 ~~~s~~~~~i~y~~~~~~~~~~~~~~~~~----~~---~p~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~ 367 (578)
++.+..+..++|++....+.+..|.++.. .+ +++....++ .++++...+..+...++..+|..+...+....
T Consensus 221 i~~Gs~i~lv~yl~w~~~~lg~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~i~~~~~~fa~~Ai~TSFlGv~lgl~d~ 300 (394)
T PF03222_consen 221 IIIGSLIPLVMYLLWVFSILGSLPREQFAEAIAQGGNVSALVSALANVSGSPWISILGSIFAFFAIATSFLGVYLGLFDF 300 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhcCCChHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999988877542 22 244444444 36677888888888888888888888777776
Q ss_pred HHH
Q 008094 368 YLG 370 (578)
Q Consensus 368 l~~ 370 (578)
+..
T Consensus 301 l~d 303 (394)
T PF03222_consen 301 LAD 303 (394)
T ss_pred HHH
Confidence 644
|
A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region. |
| >PRK10483 tryptophan permease; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.6e-13 Score=138.45 Aligned_cols=296 Identities=13% Similarity=0.025 Sum_probs=219.4
Q ss_pred ccccChhHHHHHHhhhhhhhhHHHHHHHHHhhhCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccchhhhhHHHhchh
Q 008094 58 LRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGPGVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNEL 137 (578)
Q Consensus 58 ~r~l~~~~~~~~~i~~~ig~g~~~~~~~~~~~~G~~~~~~~ii~~l~~~~~a~~~ael~~~~P~~~GG~y~~~~~~~g~~ 137 (578)
|++.+.+...++..|+.||+|.+..|-...+.+=..+.+..+++.+++...++.+.|...++|+ .-+.-..+++.+||.
T Consensus 8 ~~~~~~~g~~~iIaGT~IGaGMLaLP~~~a~~GF~~s~~~l~~~W~~M~~taLlllEv~l~~~~-g~~~~tma~~~LG~~ 86 (414)
T PRK10483 8 QTSPSLLGGVVIIGGTIIGAGMFSLPVVMSGAWFFWSMAALIFTWFCMLHSGLMILEANLNYRI-GSSFDTITKDLLGKG 86 (414)
T ss_pred cCCCcHHHHHHHHHHchHhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CCCHHHHHHHHcChH
Confidence 5678899999999999999999999875544332367888899999999999999999999998 778889999999998
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCccccCCCccccccchhhhHHHHHHHHHHHHHHHhhhH
Q 008094 138 TAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGVG 217 (578)
Q Consensus 138 ~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~ 217 (578)
...+.+..+.+-.-....++....++.+...++.. +.+.+++ +-.+++.+++..+.+.|.|
T Consensus 87 g~~i~~~s~lfl~Y~Ll~AYisg~g~il~~~l~~~---~~~i~~~----------------~~~llF~~~~~~iv~~gt~ 147 (414)
T PRK10483 87 WNVVNGISIAFVLYILTYAYISASGSILHHTFAEM---SLNVPAR----------------AAGFGFALLVAFVVWLSTK 147 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHhc---CCCCcHH----------------HHHHHHHHHHHHHHHhhhh
Confidence 77766665544433445566677777777765421 1122332 3667788888888899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcccccCCCCCCC---CCChHHHHHHHHHHHhhccchHHHhhhhhhhcCCCCChhH
Q 008094 218 ESSVLNSCMTVVKVIIVIVVIFAGAFEVDVSNWSPFA---PNGFKEILTGATVVFFAYVGFDAVANSAEESKKPQRDLPI 294 (578)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~---~~g~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~P~k~ip~ 294 (578)
...|+|+++...+++..++.+.....+.+.++..+.. +..+..++.++...+++|.=...+..+.++.++-.|++.|
T Consensus 148 ~vd~~n~~l~~~~i~~f~~~~~~l~~~i~~~~L~~~~~~~~~~~~~~~~alPvl~~SFgfh~iIPsl~~y~~~d~~kir~ 227 (414)
T PRK10483 148 AVSRMTAIVLGAKVITFFLTFGSLLGHVQPATLFNVAESNASYAPYLLMTLPFCLASFGYHGNVPSLMKYYGKDPKTIVK 227 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHhccccccchhHHHHHHHHHHHHhhccCCCcchHHHHHhCcCHHHHHH
Confidence 9999999999999888887777666665554432211 1223346677888888888778888888887765568999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccccccccC----CCC---hHHHHHHH-cChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008094 295 GILGSLLICAALYVGVSLVLTGMVPYKFLD----EDA---PLSDAFAS-RGLKYVSVLISFGAVAGLTTTLLVGLYVQSR 366 (578)
Q Consensus 295 a~~~s~~~~~i~y~~~~~~~~~~~~~~~~~----~~~---p~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR 366 (578)
+++.+..+..++|++-..++.+..|.+++. .++ .+.+.+.+ .+.+....+..+...++..+|..+...+...
T Consensus 228 ~I~iGs~Iplv~yl~W~~~~lg~l~~~~~~~~~~~~~ni~~L~~~l~~~~~~~~i~~~~~~Fa~~Ai~TSFlGv~LGL~d 307 (414)
T PRK10483 228 CLVYGTLMALALYTIWLLATMGNIPRPEFIGIAEKGGNIDVLVQALSGVLNSRSLDLLLVVFSNFAVASSFLGVTLGLFD 307 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCChHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999977531 122 22233333 3556777777888888888888777777776
Q ss_pred HHHHHhh
Q 008094 367 LYLGLGR 373 (578)
Q Consensus 367 ~l~~~a~ 373 (578)
.+..+-|
T Consensus 308 ~l~D~~k 314 (414)
T PRK10483 308 YLADLFG 314 (414)
T ss_pred HHHHHhC
Confidence 6665543
|
|
| >PRK09664 tryptophan permease TnaB; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.5e-13 Score=138.49 Aligned_cols=291 Identities=12% Similarity=0.072 Sum_probs=209.8
Q ss_pred ChhHHHHHHhhhhhhhhHHHHHHHHHhhhCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccchhhhhHHHhchhhHHH
Q 008094 62 GLFELVLIGVGASVGAGIFVVTGTVARDAGPGVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNELTAFL 141 (578)
Q Consensus 62 ~~~~~~~~~i~~~ig~g~~~~~~~~~~~~G~~~~~~~ii~~l~~~~~a~~~ael~~~~P~~~GG~y~~~~~~~g~~~g~~ 141 (578)
+.....++..|+.||+|.+..|-...+.+=..+.+..+++.+++...++.+.|....+|+ .-+.-..+++.+||....+
T Consensus 10 ~~~gg~~iIaGT~IGAGMLaLP~~~a~~Gf~~s~~ll~~~w~~M~~t~LlllEv~l~~~~-g~~l~tma~~~LG~~g~~i 88 (415)
T PRK09664 10 SAFWGVMVIAGTVIGGGMFALPVDLAGAWFFWGAFILIIAWFSMLHSGLLLLEANLNYPV-GSSFNTITKDLIGNTWNII 88 (415)
T ss_pred chhhhhHHhhhccHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CCCHHHHHHHHcChHHHHH
Confidence 555677888999999999999875544333367888899999999999999999999998 7889999999999987776
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCccccCCCccccccchhhhHHHHHHHHHHHHHHHhhhHHHHH
Q 008094 142 VFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGVGESSV 221 (578)
Q Consensus 142 ~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~ 221 (578)
.+..+.+-.-....++..+.++.+...++.. .+.+.+. ....+++.+++..+.+.|.|...|
T Consensus 89 ~~~~~~fl~Y~Ll~AYisggG~il~~~l~~~--~~~~i~~----------------~~~~llF~~~~~~~v~~gt~~vd~ 150 (415)
T PRK09664 89 SGITVAFVLYILTYAYISANGAIISETISMN--LGYHANP----------------RIVGICTAIFVASVLWISSLAASR 150 (415)
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHhhh--ccCCCcH----------------HHHHHHHHHHHHHHHHhchhHHHH
Confidence 6665544333344566677777777765420 1112221 135677888888899999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcccccCCCCCCC-CCC----hHHHHHHHHHHHhhccchHHHhhhhhhhcCCCCChhHHH
Q 008094 222 LNSCMTVVKVIIVIVVIFAGAFEVDVSNWSPFA-PNG----FKEILTGATVVFFAYVGFDAVANSAEESKKPQRDLPIGI 296 (578)
Q Consensus 222 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~g----~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~P~k~ip~a~ 296 (578)
.++++...+++..+..+....++.+.++..... ..+ +..+..++...+.+|.=...+..+....++-.|+++|++
T Consensus 151 ~nr~l~~~~ii~f~~~~~~l~~~i~~~~L~~~~~~~~~~~~~~~i~~alPVl~~SFgfh~iIPsl~~y~~~d~~~~~kaI 230 (415)
T PRK09664 151 ITSLFLGLKIISFVIVFGSFFFQVDYSILRDATSTTAGTSYFPYIFMALPVCLASFGFHGNIPSLIICYGKRKDKLIKSV 230 (415)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcccHHHHhcCccccccchHHHHHHHHHHHHHHhhhCCCcchHHHHHhCccHHHHHHHH
Confidence 999999988888887777777776665543211 111 224555777777777767777777777776567899999
Q ss_pred HHHHHHHHHHHHHHHHHHhccccccccC----CCChHH----HHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008094 297 LGSLLICAALYVGVSLVLTGMVPYKFLD----EDAPLS----DAFASRGLKYVSVLISFGAVAGLTTTLLVGLYVQSRLY 368 (578)
Q Consensus 297 ~~s~~~~~i~y~~~~~~~~~~~~~~~~~----~~~p~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l 368 (578)
+.+..+..++|++...++.+..|.+++. ++.... ...+...+++...+..+...++..+|..+...+....+
T Consensus 231 l~Gs~IpLviY~~W~~~ilG~lp~~~~~~~~~~g~nv~~l~~s~~~~~~~~~i~~~~~~Fa~~Ai~TSFlGv~LGL~D~l 310 (415)
T PRK09664 231 VFGSLLALVIYLFWLYCTMGNIPRESFKAIISSGGNVDSLVKSFLGTKQHGIIEFCLLVFSNLAVASSFFGVTLGLFDYL 310 (415)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCCchHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999988876542 212222 23334466677777777777787777777666666555
Q ss_pred HHH
Q 008094 369 LGL 371 (578)
Q Consensus 369 ~~~ 371 (578)
..+
T Consensus 311 ~D~ 313 (415)
T PRK09664 311 ADL 313 (415)
T ss_pred HHH
Confidence 544
|
|
| >PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell | Back alignment and domain information |
|---|
Probab=99.68 E-value=9.6e-14 Score=140.46 Aligned_cols=285 Identities=19% Similarity=0.301 Sum_probs=238.2
Q ss_pred ccChhHHHHHHhhhhhhhhHHHHHHHHHhhhCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccchhhhhHHHhchhhH
Q 008094 60 RLGLFELVLIGVGASVGAGIFVVTGTVARDAGPGVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNELTA 139 (578)
Q Consensus 60 ~l~~~~~~~~~i~~~ig~g~~~~~~~~~~~~G~~~~~~~ii~~l~~~~~a~~~ael~~~~P~~~GG~y~~~~~~~g~~~g 139 (578)
|++.+|...+.+...+|++....|+...+.+| .++++.+++++.....++.+..+.+++|+ -..+.+.++.+||..|
T Consensus 1 kIS~~Q~~~l~~~~~~g~~~l~~p~~l~~~~~-d~Wi~~ll~~~~~l~~~~l~~~l~~~~p~--~~l~~~~~~~~Gk~lg 77 (320)
T PF03845_consen 1 KISPRQLFFLLISSIIGTGILFLPAILAEQAG-DAWISVLLGGLIGLLLALLIYYLLKRFPG--KTLVEISEKLFGKWLG 77 (320)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CcHHHHHHHHHHHHHHHHHHHHHHHHCCC--CCHHHHHHHHhCcHHH
Confidence 57899999999999999999999999888887 88999999999999999999999999998 6899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCccccCCCccccccchhhhHHHHHHHHHHHHHHHhhhHHH
Q 008094 140 FLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGVGES 219 (578)
Q Consensus 140 ~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~ 219 (578)
...+..+.+.+....+......++.+.... .| ++|.| .+...++++.......|.+..
T Consensus 78 ~ii~~~~~l~~l~~~~~~lr~~~~~i~~~~--lp----~TP~~----------------~i~~~~ll~~~y~a~~G~e~i 135 (320)
T PF03845_consen 78 KIINLLYILYFLLISALVLREFSEFIKTYL--LP----ETPIW----------------VIILLFLLVAAYAARKGIEVI 135 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cC----cCCHH----------------HHHHHHHHHHHHHHhcCHHHH
Confidence 999999999888888888888888877653 22 44444 467777788888889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcccccCCCCCCCCCChHHHHHHHHHHHhhccchHHHhhhhhhhcCCCCChhHHHHHH
Q 008094 220 SVLNSCMTVVKVIIVIVVIFAGAFEVDVSNWSPFAPNGFKEILTGATVVFFAYVGFDAVANSAEESKKPQRDLPIGILGS 299 (578)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~P~k~ip~a~~~s 299 (578)
+|.+.+.....++..+.+........+.++..|..+.|+..++.+.....+.|.|.|....+...+|||+ +..|....+
T Consensus 136 ~R~~~~~~~~~~i~~~~i~~~~~~~~~~~~l~P~~~~g~~~i~~~~~~~~~~~~~~~~~l~~~p~~~~~~-~~~k~~~~~ 214 (320)
T PF03845_consen 136 ARVAEILFPIFLILLLLILLLSIPNIDWDNLLPVLESGIKPILKGSLVISFPFGGIEILLFLFPFVKDKK-KLKKSLLIA 214 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCCHHHeeCcccCChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCch-HHHHHHHHH
Confidence 9988888888888877777777777788888898899999999999999999999999999999999975 578999999
Q ss_pred HHHHHHHHHHHHHHHhccccccccC-CCChHHHHHHHcChh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008094 300 LLICAALYVGVSLVLTGMVPYKFLD-EDAPLSDAFASRGLK----YVSVLISFGAVAGLTTTLLVGLYVQSRLYLG 370 (578)
Q Consensus 300 ~~~~~i~y~~~~~~~~~~~~~~~~~-~~~p~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~ 370 (578)
...++++|.+..+......+.+... ...|..+..+...-+ -...++....+.+.+......+++.++.+-.
T Consensus 215 ~~~~~~~~~~~~~~~i~vfG~~~~~~~~~P~~~~~~~i~i~~fieRld~~~i~~w~~~~~~~~~~~~~~~~~~~~~ 290 (320)
T PF03845_consen 215 ILISGLFLLFIIFITIGVFGPELAKKLTYPVLELARSIEIGDFIERLDSIFILIWIIGIFIKISLYLYAASEGLSQ 290 (320)
T ss_pred HHHHHHHHHHHHHHHHHhcCHHHHhceecHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999888877554 456888877776433 2334455555666666666777777776554
|
A number of such proteins have been found to be evolutionary related [, , ]. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. Spore germination protein (amino acid permease) is involved in the response to the germinative mixture of L-asparagine, glucose, fructose and potassium ions (AFFK). These proteins could be amino acid transporters.; GO: 0009847 spore germination, 0016021 integral to membrane |
| >PRK15132 tyrosine transporter TyrP; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=5.5e-13 Score=136.82 Aligned_cols=291 Identities=16% Similarity=0.106 Sum_probs=221.5
Q ss_pred ChhHHHHHHhhhhhhhhHHHHHHHHHhhhCc-HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccchhhhhHHHhchhhHH
Q 008094 62 GLFELVLIGVGASVGAGIFVVTGTVARDAGP-GVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNELTAF 140 (578)
Q Consensus 62 ~~~~~~~~~i~~~ig~g~~~~~~~~~~~~G~-~~~~~~ii~~l~~~~~a~~~ael~~~~P~~~GG~y~~~~~~~g~~~g~ 140 (578)
+.....++..|+.+|+|.+..|-.... +|. ......++++.++...++.++|.....|+ .-+.-..+++.+||..++
T Consensus 4 ~~~g~~~li~GTaIGAGmLaLPi~~~~-~Gf~~~~~~li~~w~~m~~t~l~l~Ev~~~~~~-~~~~~~~a~~~LG~~g~~ 81 (403)
T PRK15132 4 RTLGSIFIVAGTTIGAGMLAMPLAAAG-VGFSVTLILLIGLWALMCYTALLLLEVYQHVPA-DTGLGTLAKRYLGRYGQW 81 (403)
T ss_pred cHHHHHHHHHhcchhHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC-CCCHHHHHHHHhChHHHH
Confidence 456677788999999999999876544 554 57777788888888899999999888887 778899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCccccCCCccccccchhhhHHHHHHHHHHHHHHHhhhHHHH
Q 008094 141 LVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGVGESS 220 (578)
Q Consensus 141 ~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~ 220 (578)
+.+..+.+.......++..+.++.+.+.++.+ .+.+.+.+ ...+.+.++...+.+.|.|...
T Consensus 82 i~~~~y~fl~y~ll~AYisg~g~il~~~l~~~--~~~~i~~~----------------~~~l~F~~~~~~iv~~g~~~v~ 143 (403)
T PRK15132 82 LTGFSMMFLMYALTAAYISGAGELLASSISDW--TGISMSPT----------------AGVLLFTLVAGGVVCVGTSSVD 143 (403)
T ss_pred HHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHh--ccCCCChH----------------HHHHHHHHHHHHHHhccHHHHH
Confidence 99999888766667778888667766655421 11111211 3455666666678888999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcccccCCCCCCCCCChHHHHHHHHHHHhhccchHHHhhhhhhhcCCCCChhHHHHHHH
Q 008094 221 VLNSCMTVVKVIIVIVVIFAGAFEVDVSNWSPFAPNGFKEILTGATVVFFAYVGFDAVANSAEESKKPQRDLPIGILGSL 300 (578)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~P~k~ip~a~~~s~ 300 (578)
|+++++...+++.++.......++.+.+++... +.+...+..++...+++|.=...+..+....++-+|++.|+++.+.
T Consensus 144 ~~n~~L~~~~ii~~~~~~~~l~p~~~~~~L~~~-~~~~~~~~~~iPvl~~SFgfh~iIpsl~~y~~~~~~~~~k~i~~Gs 222 (403)
T PRK15132 144 LFNRFLFSAKIIFLVVMLALMMPHIHKVNLLTL-PLQQGLALSAIPVIFTSFGFHGSVPSIVSYMGGNIRKLRWVFIIGS 222 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHhcC-CccccHHHHHHHHHHHHhhCCcccHHHHHHhCcCHHHHHHHHHHHH
Confidence 999999999888887777777777776665422 1111136677888888888888888888888877789999999999
Q ss_pred HHHHHHHHHHHHHHhccccccccC----CCC---hHHHHHHH-cChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008094 301 LICAALYVGVSLVLTGMVPYKFLD----EDA---PLSDAFAS-RGLKYVSVLISFGAVAGLTTTLLVGLYVQSRLYLGLG 372 (578)
Q Consensus 301 ~~~~i~y~~~~~~~~~~~~~~~~~----~~~---p~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a 372 (578)
.+..++|++-...+.+..|.++.. ++. +..+.+++ .+.++...+..+...++..+|..+...+....+.++-
T Consensus 223 ~i~li~yl~W~~~~lg~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~fa~~Ai~TSFlGv~lgl~d~l~d~~ 302 (403)
T PRK15132 223 AIPLVAYIFWQLATLGSIDSTTFMGLLANHAGLNGLLQALREVVASPHVELAVHLFADLALATSFLGVALGLFDYLADLF 302 (403)
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHccCchHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999887542 222 34344443 4677888888888888888888888878777777655
Q ss_pred h
Q 008094 373 R 373 (578)
Q Consensus 373 ~ 373 (578)
+
T Consensus 303 ~ 303 (403)
T PRK15132 303 Q 303 (403)
T ss_pred c
Confidence 4
|
|
| >COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.61 E-value=4.4e-12 Score=131.74 Aligned_cols=283 Identities=17% Similarity=0.156 Sum_probs=217.7
Q ss_pred CcccccChhHHHHHHhhhhhhhhHHHHHHHHHhhhCc-HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcc-chhhhhHHH
Q 008094 56 GLLRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGP-GVTISFLLAGAASVLNALCYAELASRFPAVVG-GAYLYAYTA 133 (578)
Q Consensus 56 ~l~r~l~~~~~~~~~i~~~ig~g~~~~~~~~~~~~G~-~~~~~~ii~~l~~~~~a~~~ael~~~~P~~~G-G~y~~~~~~ 133 (578)
+.+++-+..+.+...+++.+|+|++..|-. .+.+|- ..++..++++.++....+++.|.....|+ .. +.+.-+++.
T Consensus 4 ~~~~~~s~~~~vl~l~gT~IGAGvL~lP~a-~~~~G~~~~l~~l~i~~~~t~~s~~~l~~~~~~~~~-~~~~~~~~~~~~ 81 (415)
T COG0814 4 SMKKTSSDLGGVLILAGTAIGAGVLFLPVA-FGGGGFWPGLLLLIIAWPLTYLSLLLLLEALLSSPN-GKASITSLVEDY 81 (415)
T ss_pred cccCCcchHHHHHHHHccccccchhhhhHH-hcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CcccHHHHHHHH
Confidence 345667777888889999999999988864 444565 47788899999999999999999999998 63 999999999
Q ss_pred hchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCccccCCCccccccchhhhHHHHHHHHHHHHHHH
Q 008094 134 FNELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLC 213 (578)
Q Consensus 134 ~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 213 (578)
+||.++++.+..+.+.......++....++.+...++.. +..+. ....+..+++..++..+..
T Consensus 82 ~G~~~~~li~~s~~~~~~~~~~aY~~~~g~~l~~~~~~~--~~~~~---------------~~r~~~~lif~~~~~~l~~ 144 (415)
T COG0814 82 LGKKGGILIGLSYFFALYGLLVAYIVGIGNLLASFLGNQ--FGLNP---------------LPRKLGSLIFALVLAFLSW 144 (415)
T ss_pred hCcchHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHhh--cccCC---------------cchHHHHHHHHHHHHHHHH
Confidence 999999999999998887788888888888888776521 11110 1223566777777777999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCCCCCC--C-CCChHHHHHHHHHHHhhccchHHHhhhhhhhcCCCC
Q 008094 214 WGVGESSVLNSCMTVVKVIIVIVVIFAGAFEVDVSNWSPF--A-PNGFKEILTGATVVFFAYVGFDAVANSAEESKKPQR 290 (578)
Q Consensus 214 ~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~--~-~~g~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~P~k 290 (578)
.|.+..-|.+..+...+++.++++.....++.+.++.... . +..+..++.++...+++|.+.-....+..|.|+++|
T Consensus 145 ~~~~~~lk~ts~l~~~~v~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ipv~vfsF~~h~~i~si~~~~~~~~~ 224 (415)
T COG0814 145 LGTLAVLKITSLLVFGKVIYLVLLVVYLIPHWNPANLFALPSASQSFWKYLLLAIPVFVFSFGFHGNIPSLVNYMRKNSK 224 (415)
T ss_pred hchhHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHhcccccchhhHHHHHHHhhHHHhhhhCCccchHHHHHhccchh
Confidence 9999999999999999998888888877777655544321 1 244567888999999999999999999999998887
Q ss_pred C-hhHHHHHHHHHHHHHHHHHHHHHhcccccccc-------CCCChHHHHHHH-cChhHHHHHHHHHHHHHHHHHH
Q 008094 291 D-LPIGILGSLLICAALYVGVSLVLTGMVPYKFL-------DEDAPLSDAFAS-RGLKYVSVLISFGAVAGLTTTL 357 (578)
Q Consensus 291 ~-ip~a~~~s~~~~~i~y~~~~~~~~~~~~~~~~-------~~~~p~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 357 (578)
+ ++|++..+..+..++|+...+....+.+.+.- .++.....+... ...+.......+....+..++.
T Consensus 225 ~~~~k~~~~~~~~~~vlyi~~~~~~~~~~~~~~~~~il~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~Ai~tSF 300 (415)
T COG0814 225 KAVRKAILIGSLIALVLYILVGFFVFGCFGSLVFGNILAAKEQNISLLSALAGVINSPILSIALNIFALFAIATSF 300 (415)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHccCchHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHH
Confidence 7 99999999999999999999999999887622 122233343333 3444455555555555555443
|
|
| >PRK13629 threonine/serine transporter TdcC; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.1e-11 Score=124.52 Aligned_cols=286 Identities=12% Similarity=0.056 Sum_probs=209.7
Q ss_pred HHHhhhhhhhhHHHHHHHHHhhhCc-HHHHHHHHHHHHHHHHHHHHHHHhhcC-CCCccchhhhhHHHhchhhHHHHHHH
Q 008094 68 LIGVGASVGAGIFVVTGTVARDAGP-GVTISFLLAGAASVLNALCYAELASRF-PAVVGGAYLYAYTAFNELTAFLVFAQ 145 (578)
Q Consensus 68 ~~~i~~~ig~g~~~~~~~~~~~~G~-~~~~~~ii~~l~~~~~a~~~ael~~~~-P~~~GG~y~~~~~~~g~~~g~~~g~~ 145 (578)
....|+.+|+|++..|-.. +.+|. ...+..+++..++......++|..... |+ +.+.-.-+++.+|+..+.+.+..
T Consensus 26 l~l~GTAIGAGmLfLPI~~-g~~Gf~p~lillll~~p~m~~s~l~L~e~~L~~~~~-~~~i~~v~~~~lG~~g~~i~~il 103 (443)
T PRK13629 26 LGLFGTAIGAGVLFFPIRA-GFGGLIPILLMLVLAYPIAFYCHRALARLCLSGSNP-SGNITETVEEHFGKTGGVVITFL 103 (443)
T ss_pred HHHHHHHHhHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCC-CCCHHHHHHHHcChhHHHHHHHH
Confidence 4567899999999998653 33554 467777888888888999999999998 54 56788888899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccccC-CCCccccCCCccccccchhhhHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 008094 146 LMLDYHIGAASIARSLASYVVSILELFPFFKE-NIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGVGESSVLNS 224 (578)
Q Consensus 146 ~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~ 224 (578)
+.+........+.....+.+.+.+. +..+. +.+ ..+..+++.+++..+...|.|...|++.
T Consensus 104 Yff~ly~ll~aY~~~itn~l~sfl~--~ql~~~~~~----------------r~l~slifv~~l~~iv~~G~~~v~kv~~ 165 (443)
T PRK13629 104 YFFAICPLLWIYGVTITNTFMTFWE--NQLGFAPLN----------------RGFVALFLLLLMAFVIWFGKDLMVKVMS 165 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--hhcCcCCcc----------------HHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 9988777777777676666665432 11111 112 2257888888999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhcccccCCCCCCC--------CCCh-HHHHHHHHHHHhhccchHHHhhhhhh----hc-----
Q 008094 225 CMTVVKVIIVIVVIFAGAFEVDVSNWSPFA--------PNGF-KEILTGATVVFFAYVGFDAVANSAEE----SK----- 286 (578)
Q Consensus 225 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~--------~~g~-~~~~~~~~~~~~~~~G~e~~~~~~~E----~k----- 286 (578)
++...+++.++.+.+..+++.+.+++.... +++. ..++.++...+++|.=.-.+..++.. .+
T Consensus 166 ~Lv~~~i~~l~~l~~~LiP~w~~~~L~~~~~~~~~~~~~~~~~~~l~~~iPv~v~SF~f~~iIssl~~y~r~~y~~~~~~ 245 (443)
T PRK13629 166 YLVWPFIASLVLISLSLIPYWNSAVIDQVDLGSLSLTGHDGILVTVWLGISIMVFSFNFSPIVSSFVVSKREEYEKDFGR 245 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCHHHHhcCccccccccccccHHHHHHHHHHHHHHHHhccccchHHHHHHHHHhcccccc
Confidence 999999999999998888887776654211 1111 23556666667766544444433333 22
Q ss_pred -CCCCChhHHHHHHHHHHHHHHHHHHHHHhccccccccC----CCCh-HHHHHHHcCh---------hHHHHHHHHHHHH
Q 008094 287 -KPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLD----EDAP-LSDAFASRGL---------KYVSVLISFGAVA 351 (578)
Q Consensus 287 -~P~k~ip~a~~~s~~~~~i~y~~~~~~~~~~~~~~~~~----~~~p-~~~~~~~~~~---------~~~~~~~~~~~~~ 351 (578)
+.+|+..|++..+..+..++|++..+.+.+..+++++. ++.+ +....+...+ +....+..+...+
T Consensus 246 ~~a~~k~~rii~~gs~i~lv~y~fwv~S~~gsLs~~~l~~a~~qn~s~Ls~La~~~~~~~~~~~~~~~~i~~~~~ifa~~ 325 (443)
T PRK13629 246 DFTERKCSQIISRASMLMVAVVMFFAFSCLFTLSPQNMAEAKAQNIPVLSYLANHFASMTGTKSTFAITLEYAASIIALV 325 (443)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCcHHHHHHHHhhhcccccccchhHHHHHHHHHHHH
Confidence 22477889999999999999999999999999988753 3445 4444555544 5677777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 008094 352 GLTTTLLVGLYVQSRLYLGLGR 373 (578)
Q Consensus 352 ~~~~~~~~~~~~~sR~l~~~a~ 373 (578)
+...+..+...+..-.+..+.+
T Consensus 326 AI~TSFlGv~LGl~E~l~gl~~ 347 (443)
T PRK13629 326 AIFKSFFGHYLGTLEGLNGLIL 347 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888877777777777774
|
|
| >KOG1303 consensus Amino acid transporters [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.25 E-value=8.3e-09 Score=106.62 Aligned_cols=277 Identities=16% Similarity=0.132 Sum_probs=184.6
Q ss_pred cccccChhHHHHHHhhhhhhhhHHHHHHHHHhhhCc-HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccc-----hhhhh
Q 008094 57 LLRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGP-GVTISFLLAGAASVLNALCYAELASRFPAVVGG-----AYLYA 130 (578)
Q Consensus 57 l~r~l~~~~~~~~~i~~~ig~g~~~~~~~~~~~~G~-~~~~~~ii~~l~~~~~a~~~ael~~~~P~~~GG-----~y~~~ 130 (578)
.+|.-++++..+-.++.++|.|+..+| .+..+.|- +.+...++.+++...++..+.+.-+..|. -.| .-+-+
T Consensus 34 ~~~~~s~~~a~~~~i~~~~G~gvLsLP-~A~~~lGW~~G~~~Ll~~~iit~YT~~LL~~~~~~~~~-~~~~r~~~Y~dl~ 111 (437)
T KOG1303|consen 34 PSRGGSWWQAAFHIINALIGAGVLSLP-YALAQLGWISGIVILLLFAIITLYTATLLSRCWEMHEA-VPGKRRYRYPDLG 111 (437)
T ss_pred cCCCCcceehhhheehhhhhhhhhhhH-HHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-CCCccCCChHHHH
Confidence 457799999999999999999999888 56666775 45788888888999999888888888888 677 44445
Q ss_pred HHHhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCccccCCCccccccchhhhHHHHHHHHHHHH
Q 008094 131 YTAFNELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTI 210 (578)
Q Consensus 131 ~~~~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (578)
.+++|+..-.++++...+.....+..+....++.+..+++..-. +++..+ . ....+.+.+ +.+..
T Consensus 112 ~~afG~~~~~iv~~~~~~~~fg~~v~y~il~~~~L~~~~~~~~~-~~~~l~-~------------~~f~iif~~-i~~~~ 176 (437)
T KOG1303|consen 112 QAAFGPKGRLLVSVLQYLELFGICVVYIILAGDNLKALFPIVSL-NDNSLD-K------------QYFIIIFGL-IVLPL 176 (437)
T ss_pred HHHhCCCceEeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-cccccc-c------------eehhhhHHH-HHHHH
Confidence 56788777667788777776667777788888888888764311 110000 0 001111111 11122
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhhcccccC-----CCCCCCCCChHHHHHHHHHHHhhccchHHHhhhhhhh
Q 008094 211 VLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEVDVS-----NWSPFAPNGFKEILTGATVVFFAYVGFDAVANSAEES 285 (578)
Q Consensus 211 i~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-----~~~~~~~~g~~~~~~~~~~~~~~~~G~e~~~~~~~E~ 285 (578)
..+...+..........+..+....+....+..+.-.. ......+.+. .+.++....|+|.|.-....+-..+
T Consensus 177 s~lp~~~~l~~~S~~~avmS~~~a~~~~~~g~~~g~~~~~~~~~~~~~~~~~~--~f~a~g~iaFaf~gH~v~peIq~tM 254 (437)
T KOG1303|consen 177 SQLPNFHSLSYLSLVGAVMSTLYAVILIVLGIADGVGFCAPSGGYLDLGTIPT--VFTALGIIAFAYGGHAVLPEIQHTM 254 (437)
T ss_pred HHCCCcchhHHHHHHHHHHHHHHHHHHHHHhhccccccCCcccCcccCCCCcc--hhhhhhheeeeecCCeeeeehHhhc
Confidence 22444455555555555555555555555555442111 1111112221 1668888999999999999999999
Q ss_pred cCCCCChhHHHHHHHHHHHHHHHHHHHHHhccccccccCCCChHHHHHHHc-ChhHHHHHHHHHHHHHHHHHHHH
Q 008094 286 KKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLDEDAPLSDAFASR-GLKYVSVLISFGAVAGLTTTLLV 359 (578)
Q Consensus 286 k~P~k~ip~a~~~s~~~~~i~y~~~~~~~~~~~~~~~~~~~~p~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 359 (578)
|+|+| .+|+.+.+..+++.+|+.+++.-+...+++..+ +...+. ...+.....++.+.+..+++..-
T Consensus 255 k~p~~-f~~~~lis~~~~~~~y~~vai~GY~aFG~~~~~------~il~s~~~p~~~~~~ani~i~~h~i~s~~i 322 (437)
T KOG1303|consen 255 KSPPK-FKKALLISYIIVTFLYFPVAIIGYWAFGDSVPD------NILLSLQPPTWLIALANILIVLHLIGSYQI 322 (437)
T ss_pred CCchh-hhhHHHHHHHHHHHHHHHHHHhhhhhhccccch------hhhhcccCchhHHHHHHHHHHHHHhhhhhh
Confidence 99987 999999999999999999999988888765321 122333 35666667777777666665543
|
|
| >PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups | Back alignment and domain information |
|---|
Probab=99.25 E-value=4.5e-09 Score=107.06 Aligned_cols=290 Identities=19% Similarity=0.261 Sum_probs=176.8
Q ss_pred ccccChhHHHHHHhhhhhhhhHHHHHHHHHhhhCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC------ccchhhhhH
Q 008094 58 LRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGPGVTISFLLAGAASVLNALCYAELASRFPAV------VGGAYLYAY 131 (578)
Q Consensus 58 ~r~l~~~~~~~~~i~~~ig~g~~~~~~~~~~~~G~~~~~~~ii~~l~~~~~a~~~ael~~~~P~~------~GG~y~~~~ 131 (578)
+++++.++.+..+++..+|+|=......++..+||+++..+.+++++...+.++=+-|+.+|-++ .||..+|.+
T Consensus 16 ~g~iS~fqA~~~ala~~vG~GNI~GVa~AI~~GGPGAiFWMWi~a~~Gmatk~~E~~La~~yR~~~~~G~~~GGP~yyi~ 95 (416)
T PF01235_consen 16 EGGISPFQALCTALAGTVGTGNIAGVATAIAIGGPGAIFWMWISALLGMATKYAEVTLAQKYREKDEDGEYRGGPMYYIE 95 (416)
T ss_pred CCCcChHHHHHHHHHhccCcchHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHheEECCCCCEeecHHHHHH
Confidence 46799999999999999999999888889999999755544555566556666555566655542 588999999
Q ss_pred HHhchh-hHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhcccccCCCCccccCCCccccccchhhhHHHHHHHHHHH
Q 008094 132 TAFNEL-TAFLVFAQLMLDYHIG-AASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLT 209 (578)
Q Consensus 132 ~~~g~~-~g~~~g~~~~l~~~~~-~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (578)
+.+|.+ .+.+.+.+...++... ....+...++.+..-+ +.+.| ..++++.++..
T Consensus 96 ~gl~~k~la~~fai~~~~~~~~~~~~~Q~nsi~~~~~~~f--------~i~~~----------------~~gi~l~~l~~ 151 (416)
T PF01235_consen 96 KGLGSKWLAILFAIFLIIAFGIGFNMVQANSIADALSSAF--------GIPPW----------------ITGIILAILVA 151 (416)
T ss_pred HHhccchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhc--------cccHH----------------HHHHHHHHHHH
Confidence 998854 3444343333333222 2222222222222211 12223 36667777777
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCCCC---------CCCCC----ChHHHH------HHHHHHHh
Q 008094 210 IVLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEVDVSNWS---------PFAPN----GFKEIL------TGATVVFF 270 (578)
Q Consensus 210 ~i~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~---------~~~~~----g~~~~~------~~~~~~~~ 270 (578)
++..-|+|..+++...+..++.+.-++..+.-+.. +.++.. .|.++ |..+.. .++.=.+|
T Consensus 152 ~vi~GGikrI~~v~~~lVP~Ma~~Yi~~~l~ii~~-n~~~ip~~~~~If~~AF~~~aa~GG~~G~~i~~ai~~Gv~Rg~f 230 (416)
T PF01235_consen 152 LVIFGGIKRIAKVSEKLVPFMAILYILGGLIIIII-NIDQIPAAFSLIFSSAFTPKAAFGGFAGSTIMMAIRQGVARGLF 230 (416)
T ss_pred HHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHcCCccchhhHHHHHHHHHHHHhhhhhhc
Confidence 88888999999999888887776655544432221 212211 12222 222211 12222344
Q ss_pred hc---cchHHHhhhhhhhcCCCCChhHHHHHHHHHHHHHHHHHHHHHhccccccccC--CCCh-HHHHHHHcChhHHHHH
Q 008094 271 AY---VGFDAVANSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLD--EDAP-LSDAFASRGLKYVSVL 344 (578)
Q Consensus 271 ~~---~G~e~~~~~~~E~k~P~k~ip~a~~~s~~~~~i~y~~~~~~~~~~~~~~~~~--~~~p-~~~~~~~~~~~~~~~~ 344 (578)
+- .|....+|-+.|+++|.|.=-.++..-.+-+.++..+..+.+.....+.... +... ..++++...+++...+
T Consensus 231 SNEAG~Gsa~~a~a~a~~~hP~~QGl~~~~~vFiDTiiVCt~TalvIl~tG~~~~~~~~~g~~l~~~Af~~~~g~~g~~~ 310 (416)
T PF01235_consen 231 SNEAGLGSAPIAHAAAETDHPVRQGLVQMFEVFIDTIIVCTITALVILVTGVWSWGSGLEGAALTQAAFSTVLGSWGPYF 310 (416)
T ss_pred cCCCCCChhHHHHHHhcCCCcHHHeeeeeehHhHHHHHHHHHHHHHhhccCCCCCCCcchHHHHHHHHHHHhhhhhHHHH
Confidence 33 4778888889999999776555554444444444555555544433222111 1122 3456666666788888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008094 345 ISFGAVAGLTTTLLVGLYVQSRLYLGLG 372 (578)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~sR~l~~~a 372 (578)
+.+..++-.+++..++.+..-|.+.-+-
T Consensus 311 v~i~l~lFafTTilg~~~yge~~~~yl~ 338 (416)
T PF01235_consen 311 VAIALFLFAFTTILGWYYYGEKCAEYLF 338 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 8888888889999998888887766654
|
One such group is the sodium/alanine symporter family, the members of which transport alanine in association with sodium ions. These transporters are believed to possess 8 transmembrane (TM) helices [, ], forming a channel or pore through the cytoplasmic membrane, the interior face being hydrophilic to allow the passage of alanine molecules and sodium ions []. This family is restricted to the bacteria and archaea, examples are the alanine carrier protein from the Bacillus PS3 (Thermophilic bacterium PS-3); the D-alanine/glycine permease from Pseudoalteromonas haloplanktis (Alteromonas haloplanktis); and the hypothetical protein yaaJ from Escherichia coli.; GO: 0005283 sodium:amino acid symporter activity, 0006814 sodium ion transport, 0016020 membrane |
| >PLN03074 auxin influx permease; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=8.2e-08 Score=101.55 Aligned_cols=238 Identities=11% Similarity=0.036 Sum_probs=129.1
Q ss_pred cccChhHHHHHHhhhhhhhhHHHHHHHHHhhhCc-HHHHHHHHHHHHHHHHHHHH----HHHhhcCCCCccchh-----h
Q 008094 59 RRLGLFELVLIGVGASVGAGIFVVTGTVARDAGP-GVTISFLLAGAASVLNALCY----AELASRFPAVVGGAY-----L 128 (578)
Q Consensus 59 r~l~~~~~~~~~i~~~ig~g~~~~~~~~~~~~G~-~~~~~~ii~~l~~~~~a~~~----ael~~~~P~~~GG~y-----~ 128 (578)
++.+..+..+-.+...+|.|++..|. ++..+|- ..++..++.+++....+..+ -|...+.|+ .+-.| .
T Consensus 44 ~~~s~~~~~~~l~~~~vG~GILaLP~-Af~~~G~v~Gii~lv~~~~l~~Yt~~lL~~~~~~~~~r~~~-~~~~~~~~~~~ 121 (473)
T PLN03074 44 HGGSVYDAWFSCASNQVAQVLLTLPY-SFSQLGMLSGILFQIFYGLLGSWTAYLISVLYVEYRARKER-EKVDFKNHVIQ 121 (473)
T ss_pred CCchHHHHHHHHHHHHHhHHHHhHHH-HHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-CCCchhHHHHH
Confidence 34455555555777889999998776 4556664 46666777777766655554 456666775 34222 2
Q ss_pred hh---HHHhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCccccCCCccccccchhhhHHHHHHH
Q 008094 129 YA---YTAFNELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILL 205 (578)
Q Consensus 129 ~~---~~~~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (578)
|. .+.+||.++........+.....+.......+.-+. ...+. .+...|. .++..+.+
T Consensus 122 ~~e~~~~~~G~~~~~~~~~~~~v~l~~~~v~~li~~~~~~~---~l~~~--~~~~~~~--------------~i~~~v~~ 182 (473)
T PLN03074 122 WFEVLDGLLGPYWKNVGLAFNCTFLLFGSVIQLIACASNIY---YINDN--LDKRTWT--------------YIFGACCA 182 (473)
T ss_pred HHHHHHHhcChhHHHHHHHHHhhhhHHHHHHHHHHHhhhhh---hhCCC--cCCCeEE--------------eehHHHHH
Confidence 22 234788877666443333333222222222121111 11110 0111111 11222222
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCCCCCCCCCChHHHHHHHHHHHhhccchHHHhhhhhhh
Q 008094 206 ALLTIVLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEVDVSNWSPFAPNGFKEILTGATVVFFAYVGFDAVANSAEES 285 (578)
Q Consensus 206 ~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~G~e~~~~~~~E~ 285 (578)
.+. ..+..+..+.+..+.....+...+.+.+......+...++...+.++..++.++...+|+|.|.-....+-.|+
T Consensus 183 ~~~---~i~sl~~l~~~S~ig~~~tl~~av~i~i~~i~~~~~~~~~~~~~~~~~~~f~~~~~i~faf~g~~v~~~I~~~M 259 (473)
T PLN03074 183 TTV---FIPSFHNYRIWSFLGLLMTTYTAWYMTIAALSHGQVEGVKHSGPTKLVLYFTGATNILYTFGGHAVTVEIMHAM 259 (473)
T ss_pred HHH---HccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCchhHHHHHHHHHHHHHHhcccccHHHHHHhc
Confidence 222 23334555554433333323222222222222222222221123355566777778999999999999999999
Q ss_pred cCCCCChhHHHHHHHHHHHHHHHHHHHHHhcccccc
Q 008094 286 KKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYK 321 (578)
Q Consensus 286 k~P~k~ip~a~~~s~~~~~i~y~~~~~~~~~~~~~~ 321 (578)
|||+ +.++....+...+..+|+...+..+...+++
T Consensus 260 ~~P~-~F~~~~~l~~~~v~~~y~~~~~~gY~~fG~~ 294 (473)
T PLN03074 260 WKPQ-KFKYIYLAATLYVLTLTLPSAAAVYWAFGDE 294 (473)
T ss_pred cChh-cccchHHHHHHHHHHHHHHHHHeeeeeechh
Confidence 9995 5888888888888888888777666666654
|
|
| >PRK11375 allantoin permease; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=7.3e-07 Score=94.85 Aligned_cols=327 Identities=11% Similarity=0.019 Sum_probs=157.1
Q ss_pred CCcccccChhHHHHHHhhhhhhhhHHHHHHHHHhhhCc---HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcc-chhhhh
Q 008094 55 EGLLRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGP---GVTISFLLAGAASVLNALCYAELASRFPAVVG-GAYLYA 130 (578)
Q Consensus 55 ~~l~r~l~~~~~~~~~i~~~ig~g~~~~~~~~~~~~G~---~~~~~~ii~~l~~~~~a~~~ael~~~~P~~~G-G~y~~~ 130 (578)
++-+|+.++++.+.+=++..+..+-+...+..+. .|- .++++.+++.++........+. .-++ .| +.....
T Consensus 21 p~~~Rt~~~~~~~~~W~g~~~~i~~~~~~g~~l~-~GLs~~~ai~ai~lG~~i~~~~~~l~g~---~G~~-~Gl~~~v~s 95 (484)
T PRK11375 21 TQSQRTWKTFNYFTLWMGSVHNVPNYVMVGGFFI-LGLSTFSIMLAIILSAFFIAAVMVLNGA---AGSK-YGVPFAMIL 95 (484)
T ss_pred CccccCCcHHHHHHHHHHHhccHHHHHHHHHHHH-ccchHHHHHHHHHHHHHHHHHHHHHhcc---cccc-cCCChhHhH
Confidence 3446789999998887777665444433333332 232 3556656655554444444444 4444 34 355566
Q ss_pred HHHhchhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhh-cccccCCCCccccCCCccccccchhhhHHHHHHHHHH
Q 008094 131 YTAFNELTAFLVFAQLM-LDYHIGAASIARSLASYVVSILEL-FPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALL 208 (578)
Q Consensus 131 ~~~~g~~~g~~~g~~~~-l~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (578)
+..||.+-+.+.+.... +..+...+......++.+..+++. .|.+.+ .+..... ..-+....+..+++.++.
T Consensus 96 R~sFG~~Gs~l~~~~rai~~~igW~~vqt~~~g~al~~~l~~i~~~~~~-~~~~~~~-----~g~~~~~~i~~~i~~~l~ 169 (484)
T PRK11375 96 RASYGVRGALFPGLLRGGIAAIMWFGLQCYAGSLALLILIGKIWPGFLT-LGGDFTL-----LGLSLPGLITFLIFWLVN 169 (484)
T ss_pred HHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc-ccccccc-----CCCcHHHHHHHHHHHHHH
Confidence 66789876666666553 344444555556666666655432 232211 1100000 000111122334445555
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCCCCCCCCC-------ChHHHHHHHHHHHhhcc-chHHHhh
Q 008094 209 TIVLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEVDVSNWSPFAPN-------GFKEILTGATVVFFAYV-GFDAVAN 280 (578)
Q Consensus 209 ~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-------g~~~~~~~~~~~~~~~~-G~e~~~~ 280 (578)
..+...|.|...+++.+...+.++..+.+.+..+...+.+......|. ....+..++...+-.+. +.-..+.
T Consensus 170 ~~~~~~g~~~i~~l~~i~~p~~~i~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~vig~~~~~~~~~~D 249 (484)
T PRK11375 170 VGIGFGGGKVLNKFTAILNPCIYIVFGGMAIWAISLVGIGPIFDYIPSGIQKAENSGFLFLVVINAVVAVWAAPAVSASD 249 (484)
T ss_pred HHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhccCcccccCCcchHHHHHHHHHHHHHHHHHHHccccc
Confidence 666678889999988888877766555554443333222211111111 11234444433222333 3334566
Q ss_pred hhhhhcCCCCChhHHHHHHHHHHHHHHHHHHHHH-hccccccccCCCChHHHHHHHcChhHHHHHHHHHHHHHHHHHHH-
Q 008094 281 SAEESKKPQRDLPIGILGSLLICAALYVGVSLVL-TGMVPYKFLDEDAPLSDAFASRGLKYVSVLISFGAVAGLTTTLL- 358 (578)
Q Consensus 281 ~~~E~k~P~k~ip~a~~~s~~~~~i~y~~~~~~~-~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 358 (578)
++...|+|| +.-++...+..+...+.....+.. ......-.....+| .+++.+.+......+..+..+++..++..
T Consensus 250 ~tRy~k~~~-~~~~~~~~g~~i~~~~~~~~g~~~~~~a~~~~g~~~~dp-~~i~~~~~~~~~~~~a~l~~v~a~~~tN~~ 327 (484)
T PRK11375 250 FTQNAHSFR-AQALGQTLGLVVAYILFAVASVCIIAGASIHYGADTWNV-LDIVQRWDSLFASFFAVLVILMTTISTNAT 327 (484)
T ss_pred hhcccCChh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCH-HHHHHHhcchHHHHHHHHHHHHHHHHHHHH
Confidence 777778764 444565555555444432222222 11111101112333 44445444444444445555666666543
Q ss_pred HHHHHHHHHHHHHhhcCCCchhhhhhcCCCCcchhHHHHHHHHHHHHHh
Q 008094 359 VGLYVQSRLYLGLGRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGILAG 407 (578)
Q Consensus 359 ~~~~~~sR~l~~~a~d~~lP~~~~~~~~r~~~P~~ail~~~~i~~i~~~ 407 (578)
...++.+- .-.+.+||+. |.| ++.++..+++.++..
T Consensus 328 ~N~ys~~~-----~l~~l~pk~i---~~~-----~~~~i~~iig~~~~p 363 (484)
T PRK11375 328 GNIIPAGY-----QIAALAPTKL---TYK-----NGVLIASIISLLICP 363 (484)
T ss_pred hhcccHHH-----HHHHhCcCcc---chh-----hHHHHHHHHHHHhcc
Confidence 34444433 3345777643 312 244555555554443
|
|
| >KOG1304 consensus Amino acid transporters [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.5e-07 Score=95.80 Aligned_cols=347 Identities=14% Similarity=0.143 Sum_probs=202.1
Q ss_pred cccChhHHHHHHhhhhhhhhHHHHHHHHHhhhCc--HHHHHHHHHHHHH---HHHHHHHHHHhhcCCCC-----------
Q 008094 59 RRLGLFELVLIGVGASVGAGIFVVTGTVARDAGP--GVTISFLLAGAAS---VLNALCYAELASRFPAV----------- 122 (578)
Q Consensus 59 r~l~~~~~~~~~i~~~ig~g~~~~~~~~~~~~G~--~~~~~~ii~~l~~---~~~a~~~ael~~~~P~~----------- 122 (578)
+..+..+...=-+-.++|+|++..|. +.+.+|- +.+...+++.+.. ....-+.-+++++.-+.
T Consensus 45 ~~~s~~~tl~hl~k~~iGtG~l~lP~-AFk~sG~~~G~~~~~~i~~l~~yc~~~LVk~~~~L~~~~~~~~~~y~~~~~~a 123 (449)
T KOG1304|consen 45 HPTSATQTLIHLLKGSIGTGILSLPL-AFKNSGLVMGLLLTVFIGFLCTYCMHLLVKCSHKLCKRFRGPSLDYAETAESA 123 (449)
T ss_pred CCCchHHHHHHHHHhhhccccccChH-HHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCccccHHHHHHHH
Confidence 34677777666677899999987776 5666775 3444445554443 33555667777765331
Q ss_pred ccchhhhhHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCccccCCCccccccchhhhHHHH
Q 008094 123 VGGAYLYAYTAFNELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAP 202 (578)
Q Consensus 123 ~GG~y~~~~~~~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (578)
..+.|.| -|-+||...+++-....+++...++.+....++-+.++.+.. .... ....+...
T Consensus 124 ~~~~~~~-~r~~g~~~r~~V~~~L~i~QlGfc~vY~VFva~nl~~i~~~~-----~~~~-------------~s~~~~i~ 184 (449)
T KOG1304|consen 124 MEGGPGW-LRKYGPAARFVVNFFLVITQLGFCCVYLVFVATNLKQIVDEH-----SPGV-------------LSVRLYIL 184 (449)
T ss_pred HcCCcHH-HHhhcHHHHHHHHHHHHHHHhchhhEEeeeHHhhHHHHHhcc-----CCCC-------------ccHHHHHH
Confidence 1122234 566899999999999999998888888889999888887610 0011 11222333
Q ss_pred HHHHHHHHHH-HhhhHHHHHHHHHHHHHHHHHHHHHHhhhhcccc-cCCCCCCCCCChHHHHHHHHHHHhhccchHHHhh
Q 008094 203 ILLALLTIVL-CWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEVD-VSNWSPFAPNGFKEILTGATVVFFAYVGFDAVAN 280 (578)
Q Consensus 203 ~~~~~~~~i~-~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~G~e~~~~ 280 (578)
+.......+| .+..|...-+..+.-++.++.++++..-.+.... .+....+ .++.++...+.+++|+|-|.-.+-.
T Consensus 185 ~~~~~~lll~~Ir~Lk~Lsp~Sl~Anv~~~~g~~ii~~y~~~~~~~~~~~~~~--~~~~~~~lf~GtaifafEGig~VLP 262 (449)
T KOG1304|consen 185 IQLPPLLLLNLIRNLKILSPFSLFANVFILVGLAIIMYYLVQDLPPTSDLPAV--TGWSGLPLFFGTAIFAFEGIGMVLP 262 (449)
T ss_pred HHHHHHHHHHHHHhhHHhhHHHHHHHHHHHHHHHHHHHHHHhccCCccccccc--cchhhhHHHHHHHHHHhccceEEEe
Confidence 3333333333 2444554444444444444444443332222211 1111112 2366777788899999999999999
Q ss_pred hhhhhcCCCCChh---HHHHHHHHHHHHHHHHHHHHHhccccccccCCCChHHHHHHHcChhHHHHHHHHHHHHHHHHHH
Q 008094 281 SAEESKKPQRDLP---IGILGSLLICAALYVGVSLVLTGMVPYKFLDEDAPLSDAFASRGLKYVSVLISFGAVAGLTTTL 357 (578)
Q Consensus 281 ~~~E~k~P~k~ip---~a~~~s~~~~~i~y~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (578)
+=+++|+|+ +.| +.+-.++.++.++|....+.-+...+++.-++- .-+....++...+.+...++.+-+.
T Consensus 263 lEn~Mk~P~-~F~g~~gVLn~~M~~V~~ly~~~Gf~GYl~fG~~v~~sI------TLNLP~~~l~~~Vkl~~ai~I~ls~ 335 (449)
T KOG1304|consen 263 LENSMKKPQ-KFPGPFGVLNLGMGIVTLLYIFLGFFGYLAFGDDVKGSI------TLNLPQEILSQTVKLLLAIAIFLTY 335 (449)
T ss_pred hhhcccChh-hcCCccchHHHHHHHHHHHHHHHHHHHHhhccccccceE------EecCCccHHHHHHHHHHHHHHHHcC
Confidence 999999995 577 999999999999999999988888877643220 0112224445555555566666555
Q ss_pred HHHHHHHHHHHHHHhhcCCCchhhhhhcCCCCcchhHHHHHHHHHHHHHh-hcCHHHHHHHHHHHH--HHHHHHHHHHHh
Q 008094 358 LVGLYVQSRLYLGLGRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGILAG-LFNVRVLSHILSVGT--LTGYSVVSACVI 434 (578)
Q Consensus 358 ~~~~~~~sR~l~~~a~d~~lP~~~~~~~~r~~~P~~ail~~~~i~~i~~~-~~~~~~l~~~~~~~~--l~~y~~~~~~~~ 434 (578)
--.++-.-++++.- +.+++++ ++++=.++.-=....+++.+++. +-+++.++++..... .+.++++.+--+
T Consensus 336 pLQ~yv~~eIi~~~-----i~~k~~~-~~~~~~~~~~R~~lVllt~~iA~~iPnL~~fisLVGs~~~s~L~li~P~liel 409 (449)
T KOG1304|consen 336 PLQFYVPIEIIEPG-----IRKKFSE-NRKKLLEYALRVFLVLLTFLIAVAVPNLALFISLVGSVSCSLLALIFPPLIEL 409 (449)
T ss_pred chhhhhhHHHHHHh-----HHHhcCc-chhHHHHHHHHHHHHHHHHHHHHHCCcHHhhHHHHHHHHHHHHHHHccHHHHH
Confidence 56666777777653 2222221 10000111111122222222222 457788888776544 456666666555
Q ss_pred hheecC
Q 008094 435 ALRWKD 440 (578)
Q Consensus 435 ~~r~~~ 440 (578)
...+..
T Consensus 410 ~~~~~~ 415 (449)
T KOG1304|consen 410 ITFYPE 415 (449)
T ss_pred HHhccc
Confidence 444443
|
|
| >PF13906 AA_permease_C: C-terminus of AA_permease | Back alignment and domain information |
|---|
Probab=99.14 E-value=9e-11 Score=81.45 Aligned_cols=51 Identities=45% Similarity=0.749 Sum_probs=49.7
Q ss_pred ccccccchHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHhhhccccc
Q 008094 510 FSCPGVPLLPAVSIFFNLFLFAQLHYEAWWRFVILSFISIGLYAFYGQYHA 560 (578)
Q Consensus 510 ~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~~~~~~~ 560 (578)
||+|..|++|.++++.|++++.+++..+|+.+++|+++|+++|+.||+||+
T Consensus 1 F~vP~vP~~P~~si~~ni~Lm~~L~~~twirf~iWl~iGl~iYf~YG~~hS 51 (51)
T PF13906_consen 1 FKVPLVPFLPALSILINIYLMAQLSALTWIRFGIWLAIGLVIYFGYGIRHS 51 (51)
T ss_pred CCCCcccHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHheeeecC
Confidence 789999999999999999999999999999999999999999999999986
|
|
| >PTZ00206 amino acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=3.7e-07 Score=96.95 Aligned_cols=245 Identities=15% Similarity=0.153 Sum_probs=148.8
Q ss_pred ChhHHHHHHhhhhhhhhHHHHHHHHHhhhCc-HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccchhhhhHHHhchhhHH
Q 008094 62 GLFELVLIGVGASVGAGIFVVTGTVARDAGP-GVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNELTAF 140 (578)
Q Consensus 62 ~~~~~~~~~i~~~ig~g~~~~~~~~~~~~G~-~~~~~~ii~~l~~~~~a~~~ael~~~~P~~~GG~y~~~~~~~g~~~g~ 140 (578)
|..+..+-.+.+++|+|++..|.. ++.+|- ..++..++.++++......+.+.+.+-+ .-...+-+++.+||...+
T Consensus 61 g~~~s~fnL~~~~iGaGILsLP~A-f~~~G~v~giillil~a~ls~ys~~lL~~~~~~~~--~~sY~~la~~~~G~~g~~ 137 (467)
T PTZ00206 61 GIAASAFNIASSTVGAGIVGLPSA-ANSSGLVMAMIYLIIITAMTIFSIYALGVAADKTN--IRTYEGVARVLLGPWGSY 137 (467)
T ss_pred cHHHHHHHHHHHHHhHHHHHHHHH-HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCC--CCCHHHHHHHHhCHHHHH
Confidence 445566666678899999997764 556675 4666666777777666667777666533 345556666679999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCccccCCCccccccchhhhHHHHHHHHHHHHHHHhhhHHHH
Q 008094 141 LVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGVGESS 220 (578)
Q Consensus 141 ~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~ 220 (578)
++.....+.....+.++....++.+..++...+ .+++..... .... ......+.+.+-+...+.++..+
T Consensus 138 ~v~~~~~~~~~G~cv~YlIiigd~l~~~l~~~~-----~~~~~~~~~----~~r~--~~~~i~~~i~lPLs~~r~i~~L~ 206 (467)
T PTZ00206 138 YVAATRAFHGFSACVAYVISVGDILSATLKGTN-----APDFLKQKS----GNRL--LTSLMWLCFMLPLVIPRHIDSLR 206 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-----ccchhhhcc----CcEE--eeeehhhhHhhhcccccchHHHH
Confidence 998888887777777888888888777654211 111111000 0000 00111111122222345556666
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcccccCCCC-----C-------CCCCChHHHHHHHHHHHhhccchHHHhhhhhhhcCC
Q 008094 221 VLNSCMTVVKVIIVIVVIFAGAFEVDVSNWS-----P-------FAPNGFKEILTGATVVFFAYVGFDAVANSAEESKKP 288 (578)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-----~-------~~~~g~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~P 288 (578)
++..+.....+...+.+++.......+++.+ + ..+.+ .....++....|+|.+......+-+|+|||
T Consensus 207 ~~S~i~~~~i~~~vi~ivi~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~-~~~~~algi~~faF~~h~~~~~i~~~M~~~ 285 (467)
T PTZ00206 207 YVSTIAVSFMVYLVIVIVVHSCMNGLPENIKNVSVGKDDNAEIILFNSG-NRAIEGLGVFIFAYVFQITAYEVYMDMTNR 285 (467)
T ss_pred HHHHHHHHHHHHHHhhhhhhhhcccCcccccccccCCCCCCceEEecCc-hHHHhhhhHHHhhhhhhhhhHHHHHhhccc
Confidence 6554443332222222222111111111110 0 00111 256778888999999999999999999987
Q ss_pred C-CChhHHHHHHHHHHHHHHHHHHHHHhcccccc
Q 008094 289 Q-RDLPIGILGSLLICAALYVGVSLVLTGMVPYK 321 (578)
Q Consensus 289 ~-k~ip~a~~~s~~~~~i~y~~~~~~~~~~~~~~ 321 (578)
. |+..+.+..+..++.++|.+..+.-+...+++
T Consensus 286 t~~~~~~v~~~s~~i~~~lY~~~G~~GYl~fG~~ 319 (467)
T PTZ00206 286 SVGKFVLASTIAMGMCFTMYVLTAFFGYMDFGRN 319 (467)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhhhhccccc
Confidence 4 67888999999999999999999888877755
|
|
| >COG1115 AlsT Na+/alanine symporter [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.06 E-value=8.3e-07 Score=89.61 Aligned_cols=290 Identities=20% Similarity=0.271 Sum_probs=184.5
Q ss_pred cccccChhHHHHHHhhhhhhhhHHHHHHHHHhhhCcH-HHHHHHHHHHHHHHHHHHHHHHhhcCCCC------ccchhhh
Q 008094 57 LLRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGPG-VTISFLLAGAASVLNALCYAELASRFPAV------VGGAYLY 129 (578)
Q Consensus 57 l~r~l~~~~~~~~~i~~~ig~g~~~~~~~~~~~~G~~-~~~~~ii~~l~~~~~a~~~ael~~~~P~~------~GG~y~~ 129 (578)
-++.++..++...+++..+|+|=......+...+||+ .+|.|+. +++...+.+.=+-|+..|.++ .||.-+|
T Consensus 59 ~~~~vS~FqAl~~sla~~VGtGNIaGVAtAI~~GGPGAvFWMWi~-Al~Gmat~f~E~~La~~Yr~kd~~G~~~GGP~yY 137 (452)
T COG1115 59 GKGGVSSFQALMTSLAARVGTGNIAGVATAIALGGPGAVFWMWIV-ALFGMATKFAESTLAQKYRVKDKDGEYRGGPAYY 137 (452)
T ss_pred CCCCcChHHHHHHHHHhccCcchHHHHHHHHHcCCCccHHHHHHH-HHHHHHHHHHHHHHHhheeEeCCCCCCcCChHHH
Confidence 3577999999999999999999888888889999996 5555555 555556666555677776643 5788999
Q ss_pred hHHHhc-hhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhcccccCCCCccccCCCccccccchhhhHHHHHHHHH
Q 008094 130 AYTAFN-ELTAFLVFAQLMLDYH-IGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLAL 207 (578)
Q Consensus 130 ~~~~~g-~~~g~~~g~~~~l~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (578)
.++.+| |..|.+.+....+++. .....-+...++.+..-++ .|.| +.++++.++
T Consensus 138 i~kGl~~r~l~v~FA~~li~afg~i~n~vQ~NsIa~a~~~af~--------~~~~----------------~~gi~la~l 193 (452)
T COG1115 138 IEKGLGMRWLAVLFAFALIAAFGFIGNGVQSNSIASALANAFG--------IPPL----------------VTGIVLALL 193 (452)
T ss_pred HHhhcCCcHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHhcC--------CcHH----------------HHHHHHHHH
Confidence 999987 4566666666666655 3555556666666655433 2222 467777788
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCCCC---------CCCCC----ChH------HHHHHHHHH
Q 008094 208 LTIVLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEVDVSNWS---------PFAPN----GFK------EILTGATVV 268 (578)
Q Consensus 208 ~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~---------~~~~~----g~~------~~~~~~~~~ 268 (578)
...+-.-|+|..+++.........+.-++..+.-+.. +.+... .|.+. |+. .+..++.=.
T Consensus 194 ~~~VI~GGi~rIa~v~~~vVPfMA~~Yi~~~~~Ii~~-n~~~iP~~i~~If~sAF~~~aa~GG~~G~~v~~aI~~Gv~RG 272 (452)
T COG1115 194 VALVIFGGIKRIAKVSSKVVPFMAILYVLVALVIIVL-NISQIPAVIALIFSSAFGPKAAAGGFAGYTVAQAIRNGVKRG 272 (452)
T ss_pred HHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hHhhhHHHHHHHHHhcCCchhhhhhhhhHHHHHHHHHHHHHH
Confidence 8888889999999998888777665544433221111 111110 12121 221 222333334
Q ss_pred Hhhc---cchHHHhhhhhhhcCCCCChhHHHHHHHHHHHHHHHHHHHHHhccccccccC--CCChH-HHHHHHcChhHHH
Q 008094 269 FFAY---VGFDAVANSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLD--EDAPL-SDAFASRGLKYVS 342 (578)
Q Consensus 269 ~~~~---~G~e~~~~~~~E~k~P~k~ip~a~~~s~~~~~i~y~~~~~~~~~~~~~~~~~--~~~p~-~~~~~~~~~~~~~ 342 (578)
.|+- .|....++-+.++++|.|.=-..+....+=+.++.....+.+...-.++..+ +...+ .+++++..+.+..
T Consensus 273 lfSNEAGmGsap~aaAaA~~~hPv~QGlv~~~gvfiDT~iVCt~Ta~iIL~sg~~~~~~~~~G~~ltq~A~~~~~g~~G~ 352 (452)
T COG1115 273 LFSNEAGMGSAPIAAAAAKTDHPVKQGLVQMLGVFIDTLVVCTATAFIILLSGAWNSGGGLSGAALTQAAFSSHLGSWGS 352 (452)
T ss_pred hhcccccCCcchhHHHhhcCCCcHHHhHHHHhhhhhhhhHHhhHHHHHHHHcCCcccCCCCchHHHHHHHHHHhcCccHH
Confidence 4544 3666677778888888665433333333324444444444444433332222 22233 3566777778999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008094 343 VLISFGAVAGLTTTLLVGLYVQSRLYLGLG 372 (578)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a 372 (578)
.++.+..++-.+++..++.+..-|.+.-+.
T Consensus 353 ~fv~i~l~lFafTTIlg~yyyge~~~~fl~ 382 (452)
T COG1115 353 YFVAIALFLFAFTTILGWYYYGEKNIEFLF 382 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999888888776655
|
|
| >TIGR00835 agcS amino acid carrier protein | Back alignment and domain information |
|---|
Probab=99.06 E-value=3.7e-07 Score=93.81 Aligned_cols=286 Identities=19% Similarity=0.275 Sum_probs=162.5
Q ss_pred cccChhHHHHHHhhhhhhhhHHHHHHHHHhhhCcH-HHHHHHHHHHHHHHHHHHHHHHhhcCC---CC---ccchhhhhH
Q 008094 59 RRLGLFELVLIGVGASVGAGIFVVTGTVARDAGPG-VTISFLLAGAASVLNALCYAELASRFP---AV---VGGAYLYAY 131 (578)
Q Consensus 59 r~l~~~~~~~~~i~~~ig~g~~~~~~~~~~~~G~~-~~~~~ii~~l~~~~~a~~~ael~~~~P---~~---~GG~y~~~~ 131 (578)
++++.+++.+..++..+|.|=......++..+||+ .+|.|+.+ ++...+.+.-.-++.++- ++ .||.-+|.+
T Consensus 45 g~iS~fqA~~~ala~~VG~GnI~Gva~Ai~~GGpGAvFWMWI~a-llGm~~~~~e~~L~~~yr~~~~~g~~~GGP~yyi~ 123 (425)
T TIGR00835 45 GGVSSFQALFTSLAARVGIGNIVGVATAIAIGGPGAVFWMWVTA-FIGMATKFVESTLAQKYRERDADGVFRGGPMYYIK 123 (425)
T ss_pred CCccHHHHHHHHHHHHHhhhHHHHHHHHHHhcCCCchHHHHHHH-HHHHHHHHHHHHHHHHeeeeCCCCCEecChHHHHH
Confidence 56999999999999999998444444458889996 55555444 444444444444444433 21 234447888
Q ss_pred HHhc-hhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhcccccCCCCccccCCCccccccchhhhHHHHHHHHHHH
Q 008094 132 TAFN-ELTAFLVFAQLMLDY-HIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLT 209 (578)
Q Consensus 132 ~~~g-~~~g~~~g~~~~l~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (578)
+.++ |++|.+.+.. .+.+ ...........++.+...+ +.+.| +..+++.++..
T Consensus 124 ~gl~~k~lg~lfa~~-~i~~f~~~~~~Q~nsi~~~~~~~~--------~~~~~----------------v~~i~l~~l~~ 178 (425)
T TIGR00835 124 KGLGMRWLAVLFAVF-LIASFGIGNMVQANAIASALSNAF--------NVPKL----------------VTGIVLTVLTA 178 (425)
T ss_pred HHhCccHHHHHHHHH-HHHHHhhhHHHHHHHHHHHHHHHc--------CCcHH----------------HHHHHHHHHHH
Confidence 8765 7777776655 4444 3333334444444443211 12333 35556666666
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCCCC---------CCCCC----ChHH------HHHHHHHHHh
Q 008094 210 IVLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEVDVSNWS---------PFAPN----GFKE------ILTGATVVFF 270 (578)
Q Consensus 210 ~i~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~---------~~~~~----g~~~------~~~~~~~~~~ 270 (578)
.+..-|+|...++......+.....++..+.-.. .+.++.. .|.++ |..+ +..++.=..|
T Consensus 179 ~vi~GGik~Ia~v~~~lvP~m~~~Y~~~~l~ii~-~n~~~lp~~~~~If~~AF~~~a~~GG~~G~~v~~ai~~Gv~Rg~f 257 (425)
T TIGR00835 179 LIIFGGLKRIAKISSVVVPFMALLYVIMALYIII-MNIEQLPAVISLIFRSAFGGDAAAGGFAGSTVAQAIMIGVKRGLF 257 (425)
T ss_pred HHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHhCCchhhHhHHHHHHHHHHHHHhhHHHHh
Confidence 6666699999999999888877766544432221 1222221 12222 2222 1113333444
Q ss_pred hc---cchHHHhhhhhhhcCCCCChhHHHHHHHHHHHHHHHHHHHHHhcccccc---ccCCCChHH-HHHHHcChhHHHH
Q 008094 271 AY---VGFDAVANSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYK---FLDEDAPLS-DAFASRGLKYVSV 343 (578)
Q Consensus 271 ~~---~G~e~~~~~~~E~k~P~k~ip~a~~~s~~~~~i~y~~~~~~~~~~~~~~---~~~~~~p~~-~~~~~~~~~~~~~ 343 (578)
+- .|....+|-+.|+++|.|.=-.++..-.+=+.++.....+.+.....++ .+ +...+. ++++...+.+...
T Consensus 258 SNEAG~Gsa~~a~a~a~~~hP~~QGl~~~~~vfiDTivvCt~Talvil~tg~~~~~~~~-~g~~lt~~af~~~~g~~g~~ 336 (425)
T TIGR00835 258 SNEAGMGSAPIAAAAAQVSHPVRQGLVQMLGVFIDTMIVCTATALVILLSGVWNNGEGL-SGAQLTQQALSYGLGSFGAV 336 (425)
T ss_pred ccccccCcHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccCCCCCC-cHHHHHHHHHHHHhhhhHHH
Confidence 43 4777788888999999765444443333323333444444333322222 11 112232 4455555567788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008094 344 LISFGAVAGLTTTLLVGLYVQSRLYLGLG 372 (578)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~sR~l~~~a 372 (578)
++.+..++-.+++..++.+..-+.+.-+-
T Consensus 337 ~v~i~~~lFaftTii~~~yyge~~~~yl~ 365 (425)
T TIGR00835 337 FVAVALFLFAFSTIIGWYYYGEKNAEFLK 365 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 88888888899999998888777766653
|
Members of the AGCS family transport alanine and/or glycine in symport with Na+ and or H+. |
| >COG3949 Uncharacterized membrane protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.91 E-value=4.3e-06 Score=80.91 Aligned_cols=263 Identities=18% Similarity=0.174 Sum_probs=161.1
Q ss_pred HHHHhhhhhhhhHHHHHHHHHhhhCc---HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccchhhhhHHHhchhhHHHHH
Q 008094 67 VLIGVGASVGAGIFVVTGTVARDAGP---GVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNELTAFLVF 143 (578)
Q Consensus 67 ~~~~i~~~ig~g~~~~~~~~~~~~G~---~~~~~~ii~~l~~~~~a~~~ael~~~~P~~~GG~y~~~~~~~g~~~g~~~g 143 (578)
.+..++.++|+|.- +-.+..+..|+ ..+++.++++++....+....|+++++.. ...-.+.++.+||.++-+.-
T Consensus 9 ~f~~ig~~vGAGfA-sGqEi~QFF~~~G~~s~~gIivs~vlf~~~g~vim~ig~~f~a--~~y~~~~~~v~~~~~~ki~d 85 (349)
T COG3949 9 AFAFIGTVVGAGFA-SGQEIMQFFGKYGVYSILGIILSTVLFTLSGAVIMTIGKKFNA--TSYREILKYVSGPKFAKIID 85 (349)
T ss_pred HHHHHHHhhccccc-chHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcc--cchHHHHHHHhhHHHHHHHH
Confidence 34556788888743 44446666555 48999999999999999999999999985 67778889999999987765
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHhhcccccCCCCccccCCCccccccchhhhHHHHHHHHHHHHHHHhh-hHHHHH
Q 008094 144 AQLMLDYHIGAASIARSLAS-YVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWG-VGESSV 221 (578)
Q Consensus 144 ~~~~l~~~~~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g-~~~~~~ 221 (578)
....+ +....+.+..+.+. .+.+.++ .|.|. -++++++.......++ ++..-+
T Consensus 86 ~~iif-~lf~~~vVM~AGags~~~e~~~--------lP~wi----------------Gali~i~~v~i~lfl~~vegi~t 140 (349)
T COG3949 86 IIIIF-FLFSTAVVMLAGAGSLLEEMFG--------LPYWI----------------GALIIILLVLILLFLGRVEGIIT 140 (349)
T ss_pred HHHHH-HHHHHHHHHhccchhHHHHHhC--------ccHHH----------------HHHHHHHHHHHHHHHhcccceee
Confidence 43333 34444455555444 5555443 34553 3355555555555555 777777
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcccccC--CCCCC-CCCChHHHHHHHHHHHhhc-cchHHHhhhhhhhcCCCCChhHHHH
Q 008094 222 LNSCMTVVKVIIVIVVIFAGAFEVDVS--NWSPF-APNGFKEILTGATVVFFAY-VGFDAVANSAEESKKPQRDLPIGIL 297 (578)
Q Consensus 222 ~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~~~-~~~g~~~~~~~~~~~~~~~-~G~e~~~~~~~E~k~P~k~ip~a~~ 297 (578)
++.+.+.+.++.+........+....+ +++.- .++...+.. + ...+.. ...-....+++|+|++ |+..+|-.
T Consensus 141 vn~iI~P~LIi~l~~v~~~~~f~~~~~~a~~~~~~~~~W~~~~~-~--Y~alNi~~~~avLv~lg~~~~~~-~~~~~g~l 216 (349)
T COG3949 141 VNGIITPFLIIILVLVTLSFQFTNLGNAAQIVLTKQGNWKASAV-G--YGALNILVAVAVLVPLGGRMESR-KVSGIGGL 216 (349)
T ss_pred eheeHHHHHHHHHHHHHHHHHHhhccchhhhcCCcCCChHHHHH-h--hhhHHHHhHhHhhhhhccccccc-chhhhhhh
Confidence 777666665554333222222211111 11111 122221111 0 111111 2334456777999985 67778877
Q ss_pred HHHHHHHHHHHHHHHHHhccccccccCCCChHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 008094 298 GSLLICAALYVGVSLVLTGMVPYKFLDEDAPLSDAFASRGLKYVSVLISFGAVAGLTTTLLVGLYV 363 (578)
Q Consensus 298 ~s~~~~~i~y~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (578)
.+-++.+++..+.........| +..+.|-|..+++.+.. +....++.+...+...++..+.+++
T Consensus 217 ~gglIlgvl~~l~nlsLi~~~~-~v~~~dIP~l~i~~~~~-~~i~lvm~vIi~~~IytT~vg~iy~ 280 (349)
T COG3949 217 IGGLILGVLLFLINLSLIALYD-KVVNYDIPLLTIAKNFS-PLIGLVMSVIIWLEIYTTTVGLIYG 280 (349)
T ss_pred hhhHHHHHHHHHHHHHHHhhcc-hhhccCCcHHHHHHhcc-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777777666555 44456779999988886 5555566666666677766666655
|
|
| >COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.90 E-value=3.3e-05 Score=79.45 Aligned_cols=242 Identities=13% Similarity=0.097 Sum_probs=125.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCCccchhhhhHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 008094 94 VTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFP 173 (578)
Q Consensus 94 ~~~~~ii~~l~~~~~a~~~ael~~~~P~~~GG~y~~~~~~~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~ 173 (578)
++++.+++-++........++++..... -+..-.+..||..-+.+.....++.+.-..+.+....++....
T Consensus 54 si~aillG~llG~i~~A~~s~~Ga~~Gl---pqmi~sR~~fG~~Gs~l~sll~~~~~iGW~~v~~~l~~~a~~~------ 124 (442)
T COG1457 54 SLLAILLGNLLGGIFMAYFSYQGARTGL---PQMILSRYPFGVKGSILPSLLNGITLIGWFGVNVILSGIAIGS------ 124 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccCC---ChheeecccccchhHHHHHHHHHHHHhhHHHHHHHHhcccccc------
Confidence 5666666666655555555555544443 1333344458888887777777766655555555555444111
Q ss_pred cccCCCCccccCCCccccccchhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhhcccc-cCCCCC
Q 008094 174 FFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEVD-VSNWSP 252 (578)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~ 252 (578)
.++.+.| ...++..++.++....|.|...+++++.....+...+.......-..+ .+....
T Consensus 125 --~~~~~~~----------------~~ili~g~l~~l~~ifG~r~l~~l~~~a~~~~~~lf~~l~~~~~~~~~~~~~~~~ 186 (442)
T COG1457 125 --GTGLPVW----------------AGILIIGVLMTLVTIFGYRALHKLERIAVPLLLLLFLYLLALLFRSKGGLDALWV 186 (442)
T ss_pred --CCCCcHH----------------HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccceeec
Confidence 1122222 345555666777788999999999999888876665555443332111 111111
Q ss_pred CCCCChHHHHHHHHHHHhhccch-HHHhhhhhhhcCCC--CChhHHHHHHHHHHHHHHHHHHHHHhccccccccCCCChH
Q 008094 253 FAPNGFKEILTGATVVFFAYVGF-DAVANSAEESKKPQ--RDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLDEDAPL 329 (578)
Q Consensus 253 ~~~~g~~~~~~~~~~~~~~~~G~-e~~~~~~~E~k~P~--k~ip~a~~~s~~~~~i~y~~~~~~~~~~~~~~~~~~~~p~ 329 (578)
-.|....++..++..++-.+..+ -.++.++.-.|+|+ |.+--+.....+-....+++.... ....+.+ + +.
T Consensus 187 ~~~~~~~~fl~a~slv~g~~~sw~~~~aDysRy~~~~t~~~~~~~~~~G~~l~~~~~~ilGa~~-a~a~g~~----~-~~ 260 (442)
T COG1457 187 KGPTSPLSFLSALSLVIGSFASWGPYAADYSRYAPSPTPSKAFLAAVLGFFLGTSFMMILGAAL-AAAAGNA----D-SI 260 (442)
T ss_pred cCCCcchhHHHHHHHHHHHHHhhhhhhhhhhhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCCC----c-hH
Confidence 11444456666555544444333 44566777777765 322222222222222333333332 2222322 2 45
Q ss_pred HHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008094 330 SDAFASRGLKYVSVLISFGAVAGLTTTLLVGLYVQSRLYLG 370 (578)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~ 370 (578)
.+.....|+ +.....+.+.++..++..-.+++++=-..+
T Consensus 261 ~~~~~~~G~--~g~~~~lil~l~~~ttN~~nlYsa~ls~~~ 299 (442)
T COG1457 261 ADVMLGLGG--FGLPAILILVLGTVTTNANNLYSAGLSFAN 299 (442)
T ss_pred HHHHHhccc--HHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 555555554 334444555666666655555555543333
|
|
| >PRK11017 codB cytosine permease; Provisional | Back alignment and domain information |
|---|
Probab=98.77 E-value=0.00033 Score=73.20 Aligned_cols=215 Identities=13% Similarity=0.123 Sum_probs=108.6
Q ss_pred ccccChhHHHHHHhhhhhhhhHHHHHHHHHhhhCc-HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccc-hhhhhHHHhc
Q 008094 58 LRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGP-GVTISFLLAGAASVLNALCYAELASRFPAVVGG-AYLYAYTAFN 135 (578)
Q Consensus 58 ~r~l~~~~~~~~~i~~~ig~g~~~~~~~~~~~~G~-~~~~~~ii~~l~~~~~a~~~ael~~~~P~~~GG-~y~~~~~~~g 135 (578)
+|+ ++++....-++..+....+...+.....-+. .++++.+++.++........+..+ |+ .|= .....+..||
T Consensus 8 ~r~-~~~~~~~~~~g~~~~~~~~~~g~~l~~GLs~~~ai~aiilG~~i~~~~~~l~~~~G---~k-~G~~~~v~sR~~FG 82 (404)
T PRK11017 8 ARK-GVLSLTMVMLGFTFFSASMWAGGTLGTGLSFVDFLLAVLIGNLLLGIYTAALGYIG---AK-TGLSTHLLARFSFG 82 (404)
T ss_pred Hhc-chHhHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH---hc-cCcCHHHHHHHHhc
Confidence 455 8888766666655443333333332111222 467777777665544444444444 44 343 4445566689
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCccccCCCccccccchhhhHHHHHHHHHHHHHHHhh
Q 008094 136 ELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWG 215 (578)
Q Consensus 136 ~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g 215 (578)
.+-+.+.+....+..+...+......+..+....+. +.+ ...+++.++.......|
T Consensus 83 ~~Gs~l~~~~~~i~~igW~av~~~~~~~~l~~~~~~--------~~~----------------~~~~i~~~l~~~~~~~G 138 (404)
T PRK11017 83 EKGSWLPSLLLGFTQVGWFGVGVAMFAIPVVKATGL--------DIN----------------LLIVLSGLLMTVTAYFG 138 (404)
T ss_pred hhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCC--------CHH----------------HHHHHHHHHHHHHHHHH
Confidence 887777766666655544444444444444433210 000 12333445555666788
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhcccc-cCCCCCCCCCChHHHHHHHHHHHhh-ccchHHHhhhhhhhcCCCCChh
Q 008094 216 VGESSVLNSCMTVVKVIIVIVVIFAGAFEVD-VSNWSPFAPNGFKEILTGATVVFFA-YVGFDAVANSAEESKKPQRDLP 293 (578)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~-~~G~e~~~~~~~E~k~P~k~ip 293 (578)
.|...+++++......+..+...+....+.+ .+......+.+...+..++...+-. ..+.-..+.++...|+||+. -
T Consensus 139 ~~~i~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~g~~~~~~~~~~DysRy~k~~~~~-~ 217 (404)
T PRK11017 139 ISALTILSRIAVPAIALLGGYSVWLAVNDVGGLDGLKAIVPAEPLDFSAALTLVVGSFISGGTLTADFVRFGRSAKIA-V 217 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhhhcCCCCCcccHHHHHHHHHHHHHHhHhcCCChHhhccCccce-e
Confidence 8888888888777766655544433322211 1111111122222444444332222 23445566788888876543 3
Q ss_pred HHHHHHHHH
Q 008094 294 IGILGSLLI 302 (578)
Q Consensus 294 ~a~~~s~~~ 302 (578)
.+...+..+
T Consensus 218 ~~~~lg~~i 226 (404)
T PRK11017 218 LATMVAFFL 226 (404)
T ss_pred ehhHHHHHH
Confidence 444444433
|
|
| >PRK09442 panF sodium/panthothenate symporter; Provisional | Back alignment and domain information |
|---|
Probab=98.60 E-value=0.00087 Score=71.96 Aligned_cols=281 Identities=14% Similarity=0.151 Sum_probs=136.8
Q ss_pred ccccChhHHHHHHhhhhhhhhHHHHH-HHHHhhhCcH-HHHHH---HHHHHHHHHHHHHHHHHhhcCCCCccchhhhhHH
Q 008094 58 LRRLGLFELVLIGVGASVGAGIFVVT-GTVARDAGPG-VTISF---LLAGAASVLNALCYAELASRFPAVVGGAYLYAYT 132 (578)
Q Consensus 58 ~r~l~~~~~~~~~i~~~ig~g~~~~~-~~~~~~~G~~-~~~~~---ii~~l~~~~~a~~~ael~~~~P~~~GG~y~~~~~ 132 (578)
.|+++++-..+-..++.++++-+... +.++.. |-. .+++. ....+.....+.-+.++.++.. .=..++|.++
T Consensus 40 gr~~~~~~~~~s~~at~~s~~t~ig~~g~~y~~-G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~--~~T~~e~l~~ 116 (483)
T PRK09442 40 NRSMGGFVLAMTLIATYISASSFIGGPGAAYKY-GLGWVLLAMIQVPTVWLSLGILGKKFAILARKYN--AVTLNDMLRA 116 (483)
T ss_pred CCCccHHHHHHHHHHHHhhHhHHhCChhHHHHh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CccHHHHHHH
Confidence 57888887766666666666555444 444443 432 22211 1111122223334555666653 4578888888
Q ss_pred Hhchh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCccccCCCccccccchhhhHHHHHHHHHHHHH
Q 008094 133 AFNEL-TAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIV 211 (578)
Q Consensus 133 ~~g~~-~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 211 (578)
-||+. .....+....+..+...+....+.+..++.+++. | .+. . +.+...++..+.
T Consensus 117 Ryg~~~~~~~~~i~~~~~~~~~~~~ql~~~g~~l~~~~gi-~-------~~~------------~---iii~~~iv~iYt 173 (483)
T PRK09442 117 RYQSRLLVWLASLSLLVFFFAAMTAQFIGGARLLETATGI-S-------YET------------G---LLIFGITVALYT 173 (483)
T ss_pred HhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-C-------HHH------------H---HHHHHHHHHHHH
Confidence 88854 5666666555555555556666666666665432 1 110 1 111122223333
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHhhhhc-------------ccccCCCCCCCCCChH--HHHHH-HHHHHhhccch
Q 008094 212 LCWGVGESSVLNSCMTVVKVIIVIVVIFAGAF-------------EVDVSNWSPFAPNGFK--EILTG-ATVVFFAYVGF 275 (578)
Q Consensus 212 ~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~-------------~~~~~~~~~~~~~g~~--~~~~~-~~~~~~~~~G~ 275 (578)
..-|.|.......+-.++.++..+++.+.... ..+++.+++..+.++. ..... .........+.
T Consensus 174 ~~GGl~av~~TD~iQ~~i~~~~~~vi~~~~~~~~gG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 253 (483)
T PRK09442 174 AFGGFRAVVLTDALQGIVMLVGTVILLIGVIHAGGGLENAVQTLQAIDPQLVTPQGADDILSPPFMTSFWILVCFGVIGL 253 (483)
T ss_pred HhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHhcCccccCCCCCCccccHHHHHHHHHHHHHHHhCC
Confidence 44455555544443333333332222211111 0111111222222211 11111 11112222333
Q ss_pred HHHhhhhhhhcCCCCChhHHHHHHHHHHHHHHHHHHHHHh---ccccccccCCCChHHHHHHHcChhHHHHHHHHHHHHH
Q 008094 276 DAVANSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLT---GMVPYKFLDEDAPLSDAFASRGLKYVSVLISFGAVAG 352 (578)
Q Consensus 276 e~~~~~~~E~k~P~k~ip~a~~~s~~~~~i~y~~~~~~~~---~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 352 (578)
....+-.=..||+ |+..|+.+.+.+....+++...+.-. ...|+ .-+.+..+.....+..++++..++..+++.+
T Consensus 254 p~~~qR~~aaks~-~~a~~~~~~~~~~~~~~~~~~~~~G~~~~~~~p~-~~~~~~~~p~l~~~~lp~~l~gl~~a~~~aA 331 (483)
T PRK09442 254 PHTAVRCMSYKDS-KALHRGIIIGTIVVGFLMFGMHLAGALGRAVLPD-LTVPDKVIPTLMLKVLPPFAAGIFLAAPMAA 331 (483)
T ss_pred CHHHHHHHHcCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCCccchHHHHHHHHcCHHHHHHHHHHHHHH
Confidence 3333333346775 57788888777666665544433221 11232 1123455666677777888888888888888
Q ss_pred HHHHHHHHHHHHHH
Q 008094 353 LTTTLLVGLYVQSR 366 (578)
Q Consensus 353 ~~~~~~~~~~~~sR 366 (578)
.+++..+.+.+.+=
T Consensus 332 ~mST~~s~l~~~ss 345 (483)
T PRK09442 332 IMSTVDSQLLQSSS 345 (483)
T ss_pred HHHHHHHHHHHHHH
Confidence 88887777765554
|
|
| >PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR) | Back alignment and domain information |
|---|
Probab=98.58 E-value=1.3e-08 Score=107.03 Aligned_cols=355 Identities=12% Similarity=0.081 Sum_probs=194.6
Q ss_pred cccChhHHHHHHhhhhhhhhHHHHHHHHHhhhCc-HHHHHHHHHHHHHHHHHHHHHHHhhcCCC--CccchhhhhHHHhc
Q 008094 59 RRLGLFELVLIGVGASVGAGIFVVTGTVARDAGP-GVTISFLLAGAASVLNALCYAELASRFPA--VVGGAYLYAYTAFN 135 (578)
Q Consensus 59 r~l~~~~~~~~~i~~~ig~g~~~~~~~~~~~~G~-~~~~~~ii~~l~~~~~a~~~ael~~~~P~--~~GG~y~~~~~~~g 135 (578)
||-++++..+..+..++|+|++..|... ..+|- ..++..++.++++......+.|.....|+ +.-..-+-+++.+|
T Consensus 1 ~~~s~~~~~~~l~~~~iG~G~L~lP~af-~~~G~~~g~i~l~~~~~~s~~t~~~l~~~~~~~~~~~~~~~y~~l~~~~~G 79 (409)
T PF01490_consen 1 HKGSWFSAFFNLINSIIGAGILSLPYAF-AQSGWVLGIILLVLVALLSYYTMYLLVRAANAMPNGTGRRSYGDLARRAFG 79 (409)
T ss_pred CCccHHHHHHHHHHHHHhHHHHHHHHHH-HHhhhhhhhHHHHHHHHHHHHhhhhhhcccccccccccccccccccccccc
Confidence 4578899999999999999999888754 44665 57777788888888888899999988762 02333344466799
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccC-CCCccccCCCccccccchhhhHHHHHHHHHHHHHH-H
Q 008094 136 ELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKE-NIPSWIGHGGEEFLGGTLSINILAPILLALLTIVL-C 213 (578)
Q Consensus 136 ~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~ 213 (578)
|+.++++.....+........+....++.+..+..... ++ ..... ...++..++..-+. .
T Consensus 80 ~~~~~~~~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~--~~~~~~~~----------------~~~~i~~~i~~pls~~ 141 (409)
T PF01490_consen 80 PKGKWFVDICIFIYLFGSCVAYLIIIGDSLSSLIPSFF--GDLFISRY----------------VWIIIFALIVLPLSFL 141 (409)
T ss_pred ccccccccchheeccccccceeEEEeeeeeeccccccc--cccccccc----------------cccccccccccccccc
Confidence 99888887776666555555555555555555433110 00 00000 11111222222222 2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhhhcc--cccCCCCC---CCCCChHHHHHHHHHHHhhccchHHHhhhhhhhcCC
Q 008094 214 WGVGESSVLNSCMTVVKVIIVIVVIFAGAFE--VDVSNWSP---FAPNGFKEILTGATVVFFAYVGFDAVANSAEESKKP 288 (578)
Q Consensus 214 ~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~~~---~~~~g~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~P 288 (578)
+..+..+..+.+.....+..+.+........ .+..+... ..+..+.++..++....++|.+......+.+|+|+|
T Consensus 142 ~~l~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~faf~~~~~~~~i~~~m~~~ 221 (409)
T PF01490_consen 142 KNLKSLRYLSILGLFSIFYFIVIVVIYIISYGPGEPSGVPSPPVWPFISFSGFFSAFGIIIFAFSCHPNLPPIQSEMKDP 221 (409)
T ss_pred chhhHHHHHhhhhhhccceeeeeecceeeeeecccccccccccccccchhhHHHHhhhhhhhhhhcccccceeeeeccCC
Confidence 2333333333222222221111111111111 11111111 122345688889999999999999999999999998
Q ss_pred CC--ChhHHHHHHHHHHHHHHHHHHHHHhccccccccCCCChHHHHHHHcChh-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008094 289 QR--DLPIGILGSLLICAALYVGVSLVLTGMVPYKFLDEDAPLSDAFASRGLK-YVSVLISFGAVAGLTTTLLVGLYVQS 365 (578)
Q Consensus 289 ~k--~ip~a~~~s~~~~~i~y~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s 365 (578)
+| +..++...+...+.++|.+..+......+++.- + ++..+.... +...+..+...+....+..-..+...
T Consensus 222 ~~~~~~~~~~~~s~~~~~~~y~~~g~~gy~~fg~~~~-~-----~il~n~~~~~~~~~i~~~~~~i~~~~s~pl~~~p~~ 295 (409)
T PF01490_consen 222 SKFKKMKKVLSISMIICFIIYLLFGIFGYLAFGDSVQ-G-----NILLNLPNDDVLIIIARILLVISLLLSYPLQLFPAR 295 (409)
T ss_pred ccccccceeeeehhhhhhHHhhhhhhcccceeeeeec-c-----hhhhcCCCcccccccccccchhhhhhccccccchhH
Confidence 65 455999999999999999999988877765421 1 122333222 23333444444444444434444445
Q ss_pred HHHHHHhhcC-----CCchhhhh-hcCCCCcchhHHHHHHHHHHHHH-hhcCHHHHHHHHHHH--HHHHHHHHHHHHhhh
Q 008094 366 RLYLGLGRDG-----LLPSIFAK-VHPKRHTPVHSQVWVGIVAGILA-GLFNVRVLSHILSVG--TLTGYSVVSACVIAL 436 (578)
Q Consensus 366 R~l~~~a~d~-----~lP~~~~~-~~~r~~~P~~ail~~~~i~~i~~-~~~~~~~l~~~~~~~--~l~~y~~~~~~~~~~ 436 (578)
+.+...-+++ ..++.-.+ ...|.... ....+++.+++ ..-+++.+.++.+.. ..+.|+++....++.
T Consensus 296 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~iA~~vp~~~~i~~l~Ga~~~~~i~fi~P~l~~~~~ 371 (409)
T PF01490_consen 296 NSLENLLFKRAASSRDSPKNTPSSRWLRYLIR----IILVLLSFLIAIFVPNFGDIISLVGALFGSFISFILPALLYLKL 371 (409)
T ss_pred hhhhhheeccccccccccccccccceeeeeee----cchhhhhhhhhhhccchhhhhcccchHHHHhHHHHHHHHHHHHh
Confidence 5555444321 11110000 00011111 11112222222 223566666655433 357899999888887
Q ss_pred eecCCC
Q 008094 437 RWKDRT 442 (578)
Q Consensus 437 r~~~~~ 442 (578)
+++++.
T Consensus 372 ~~~~~~ 377 (409)
T PF01490_consen 372 FKRKRN 377 (409)
T ss_pred hccccc
Confidence 766543
|
UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT) and is is predicted to have 10 transmembrane domains UNC47_CAEEL []. MTR is an N system amino acid transporter system protein involved in methyltryptophan resistance MTR_NEUCR. Other members of this family include proline transporters and amino acid transporters whose specificity has not yet been identified. |
| >TIGR00800 ncs1 NCS1 nucleoside transporter family | Back alignment and domain information |
|---|
Probab=98.50 E-value=0.0013 Score=69.61 Aligned_cols=113 Identities=9% Similarity=-0.015 Sum_probs=72.6
Q ss_pred CcccccChhHHHHHHhhhhhhhhHHHHHHHHHhhh-Cc-HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccchhhhhHHH
Q 008094 56 GLLRRLGLFELVLIGVGASVGAGIFVVTGTVARDA-GP-GVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTA 133 (578)
Q Consensus 56 ~l~r~l~~~~~~~~~i~~~ig~g~~~~~~~~~~~~-G~-~~~~~~ii~~l~~~~~a~~~ael~~~~P~~~GG~y~~~~~~ 133 (578)
+-+|+.++++...+-++..+...-+..-+.....+ +. .++++.+++.++........+..+.++-. ......+..
T Consensus 9 ~~~R~~~~~~~~~~W~~~~~~v~~~~~Ga~l~~~GLs~~~ailai~lG~~i~~~~~~l~~~~G~r~Gl---~~~v~sR~~ 85 (442)
T TIGR00800 9 EEERTWSFLNYFSLWLGAAFNIATWAIGALGLPLGLSWWQSVIAIILGNLLGGIFVALNSRAGAKYGL---PFPVLSRAS 85 (442)
T ss_pred cccCCccHHHHHHHHHHHhhhHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHhhhhHHHhCC---Ccchhhhhh
Confidence 34577899998888777765543343333333221 22 36666666666555544445555544443 355666777
Q ss_pred hchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008094 134 FNELTAFLVFAQLMLDYHIGAASIARSLASYVVSILEL 171 (578)
Q Consensus 134 ~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~ 171 (578)
||.+-+.+.+...++..+...+..+...++.+..+++.
T Consensus 86 FG~~Gs~~~~~~~~i~~igW~av~~~~~g~al~~~l~~ 123 (442)
T TIGR00800 86 FGIYGSLLPSLLRIVMAIGWYGVQAWVGGLCVALMLDS 123 (442)
T ss_pred hhhhHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 99888888888888887777788888888877776653
|
The NCS1 family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism. |
| >COG1953 FUI1 Cytosine/uracil/thiamine/allantoin permeases [Nucleotide transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.39 E-value=0.0045 Score=64.15 Aligned_cols=364 Identities=14% Similarity=0.100 Sum_probs=179.3
Q ss_pred CCCCcccccChhHHHHHHhhhhhhhhHHHHHHHHHhhhC-c-HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccchhhhh
Q 008094 53 DGEGLLRRLGLFELVLIGVGASVGAGIFVVTGTVARDAG-P-GVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYA 130 (578)
Q Consensus 53 ~~~~l~r~l~~~~~~~~~i~~~ig~g~~~~~~~~~~~~G-~-~~~~~~ii~~l~~~~~a~~~ael~~~~P~~~GG~y~~~ 130 (578)
..++.+|+.++++-+.+=.+.+...+-+...+...+.+. + .++++.+++-++....+..-+..++++-. ..-.-.
T Consensus 33 P~~~~~rtWg~~~~~~~W~~~~~nv~~~~~aa~~~~lGLS~~qallai~vG~~iv~i~m~Lng~~G~~~gI---pFpv~~ 109 (497)
T COG1953 33 PTPAEQRTWGWWNYFALWLGMVHNVPTYMLAAGLFELGLSPWQALLAILVGNLIVAIFMVLNGHAGSKYGI---PFPVLS 109 (497)
T ss_pred CCccccCcchHHHHHHHHHHhhccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhccCcccccCC---CchHHH
Confidence 334567889999998888887766666666666666654 3 48888888877766655555544444433 122344
Q ss_pred HHHhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cccccCCCCccccCCCccccccchhhhHHHHH-HHHHH
Q 008094 131 YTAFNELTAFLVFAQLMLDYHIGAASIARSLASYVVSILEL-FPFFKENIPSWIGHGGEEFLGGTLSINILAPI-LLALL 208 (578)
Q Consensus 131 ~~~~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 208 (578)
+..||-..+-.-...-.+.-+......+...+..++.++.. .|.+. .+.... ...+.....++.+. +.++-
T Consensus 110 RaSFGi~Ga~~p~l~R~i~A~~WyGvqty~Gg~av~llL~~i~~~~~--~~~~~~-----~~lg~tt~~~i~F~ifW~l~ 182 (497)
T COG1953 110 RASFGIYGANFPALIRAIVAIVWYGVQTYAGGLAVNLLLGSIFPSLL--IPNTLS-----PLLGLTTLELICFFIFWVLQ 182 (497)
T ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhccccc--cCCccc-----cccCCcHHHHHHHHHHHHHH
Confidence 55577655555444444444444455566666666655543 23211 111000 00111222234443 34444
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCCCC---C-CCCCC---hHHHHHHHHHHHhhc--cchHHHh
Q 008094 209 TIVLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEVDVSNWS---P-FAPNG---FKEILTGATVVFFAY--VGFDAVA 279 (578)
Q Consensus 209 ~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~---~-~~~~g---~~~~~~~~~~~~~~~--~G~e~~~ 279 (578)
..+-..|.+..+|++.+...+..+..+.+.+....+.+..+.. + -.+.+ ...++.++. .+..+ +..-...
T Consensus 183 ~l~~~~g~~~Ir~~~~~a~p~~~~~~~gl~Iw~~~~a~g~~~~~~~p~~~~~~~~~~w~~~~~~~-~~v~~~Atl~lN~~ 261 (497)
T COG1953 183 LLVLFKGMESIRKFETWAGPLVYIAMLGLAIWALVKAGGSSILGELPAGTVSGSNSSWAFLAGIA-AWVGFWATLALNIP 261 (497)
T ss_pred HHHHhcCHHHHHHHHHHhchHHHHHHHHHHHHHHHhcCCcCccccCCCCCCCcchhHHHHHHHHH-HHHHHHHHHhcCCc
Confidence 4555689999999999999888888888877766554432111 1 11111 112222221 11111 1122234
Q ss_pred hhhhhhcCCCCChhHHHHHHHHHHHHHHHHHHHHHhccccccccCC--CChHHHHHHHcChhHHHH-HHHHHHHHHHHHH
Q 008094 280 NSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLDE--DAPLSDAFASRGLKYVSV-LISFGAVAGLTTT 356 (578)
Q Consensus 280 ~~~~E~k~P~k~ip~a~~~s~~~~~i~y~~~~~~~~~~~~~~~~~~--~~p~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 356 (578)
..+.+.|+| |+.-++-..++-+...+.-+..+......- ...++ -+ ..|+..+........ +..+..+++..++
T Consensus 262 DFsRfa~s~-~~~~~gq~~gLPv~~~l~~ligvv~tsa~~-~lyG~~~w~-P~di~~~~~~~~~~~fl~~l~~~iati~~ 338 (497)
T COG1953 262 DFTRFAKSQ-KAQIWGQLVGLPVNFALFSLIGVVVTSASY-ILYGETIWD-PLDIVARFLSGFYAAFLAGLTFAVATIST 338 (497)
T ss_pred hhhcccCCh-hhhhhccchhhhHHHHHHHHHHhhHHHHHH-HhhCcccCC-HHHHHHHhccchHHHHHHHHHHHHHHHhh
Confidence 556666665 344445444444444444444433332211 01111 12 345555555444443 5555555555555
Q ss_pred HHHHHHHHHHHHHHHhhcCCCchhhhhhcCCCCcchhHHHHHHHHHHHHHhh---cCH-HHHHHHHHHHHHH--HHHHHH
Q 008094 357 LLVGLYVQSRLYLGLGRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGILAGL---FNV-RVLSHILSVGTLT--GYSVVS 430 (578)
Q Consensus 357 ~~~~~~~~sR~l~~~a~d~~lP~~~~~~~~r~~~P~~ail~~~~i~~i~~~~---~~~-~~l~~~~~~~~l~--~y~~~~ 430 (578)
..+.-..++- +.++ +.+||.... | ++-+++.+++.++.-. -+- .....+.+.+.++ ...+++
T Consensus 339 Ni~aN~vsp~--~D~s--~l~Pk~in~---k-----rg~liaA~ial~~~PW~l~~s~s~f~~~L~~yg~~LgpiaGVmi 406 (497)
T COG1953 339 NIAANIVSPG--YDLS--ALFPKYINI---K-----RGGLIAAIIALLICPWNLLESSSSFTTFLGSYGVFLGPIAGVMI 406 (497)
T ss_pred hHHhccCChH--HHHH--Hhcccccch---h-----hhHHHHHHHHHHHcChHHHcCccHHHHHHHHHHHHHHHHHHHHH
Confidence 4432222221 1222 366765542 2 2345666665544322 121 1222222333333 345566
Q ss_pred HHHhhheecCCC
Q 008094 431 ACVIALRWKDRT 442 (578)
Q Consensus 431 ~~~~~~r~~~~~ 442 (578)
.-++..||++-+
T Consensus 407 aDyflirk~~~~ 418 (497)
T COG1953 407 ADYFLVRKGRLN 418 (497)
T ss_pred HHHHhhhcCccC
Confidence 667777776654
|
|
| >PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)) | Back alignment and domain information |
|---|
Probab=98.33 E-value=0.0029 Score=65.40 Aligned_cols=316 Identities=18% Similarity=0.154 Sum_probs=167.0
Q ss_pred hhhhhhhhHHHHHHHHHhhhCcH---HHHHHHHHHHHHHHHHHHHHHHhhcCCCCccchhhhhHHHhchhhHHHHHHHHH
Q 008094 71 VGASVGAGIFVVTGTVARDAGPG---VTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNELTAFLVFAQLM 147 (578)
Q Consensus 71 i~~~ig~g~~~~~~~~~~~~G~~---~~~~~ii~~l~~~~~a~~~ael~~~~P~~~GG~y~~~~~~~g~~~g~~~g~~~~ 147 (578)
++.-.|+|=...|...=+.+|.. +.++++++++..=..+. ++...- .|+.+...+| .||..|.+......
T Consensus 13 FamFFGAGNLIFPp~lG~~aG~~~~~a~~GF~lTgV~lP~Lgv----ia~~~~--~~~~~~l~~~-v~~~f~~if~~~i~ 85 (427)
T PF05525_consen 13 FAMFFGAGNLIFPPFLGQQAGSNWWPAMIGFLLTGVGLPLLGV----IAVAKS--GGGIEDLASR-VGPKFALIFTILIY 85 (427)
T ss_pred HHHHhCCccccchHHHHHHhcchHHHHHHHHHHHHHHHHHHHH----HHHhhc--CCCHHHHhcc-cCcHHHHHHHHHHH
Confidence 44446677666777766778863 66677777766433222 111221 2455555554 67777766554333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCccccCCCccccccchhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 008094 148 LDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGVGESSVLNSCMT 227 (578)
Q Consensus 148 l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~ 227 (578)
+.--... +.....+....... .|.+.. + +.....+..+++..+...+.++.-|...++-++++
T Consensus 86 l~IGP~~-aiPRtaa~sfe~~i--~p~~~~--~------------~~~~~~ifs~iFF~i~~~l~~~p~kivd~iGk~LT 148 (427)
T PF05525_consen 86 LSIGPLF-AIPRTAAVSFEMGI--APFFPE--N------------SNISLLIFSIIFFAITYLLSLNPSKIVDRIGKFLT 148 (427)
T ss_pred HHHHhcc-cCcchhhhhHHHhh--hccCCc--c------------cccchhhhhHHHHHHHHHHHhchhhHHHHHHHHHH
Confidence 2211110 11122222211111 122211 0 11123356667777788888888999999999999
Q ss_pred HHHHHHHHHHHhhhhcccccCCCCCC---CCCCh-HHHHHHH----HHHHhhccchHHHhhhhhhhcCCCCChhHHH---
Q 008094 228 VVKVIIVIVVIFAGAFEVDVSNWSPF---APNGF-KEILTGA----TVVFFAYVGFDAVANSAEESKKPQRDLPIGI--- 296 (578)
Q Consensus 228 ~~~~~~~~~~~i~~~~~~~~~~~~~~---~~~g~-~~~~~~~----~~~~~~~~G~e~~~~~~~E~k~P~k~ip~a~--- 296 (578)
-+.++.++++++.++.+...+.-++- .++.+ .++.-+- ..+...|...-..+--....||+ |+..|.+
T Consensus 149 P~LL~~l~ilii~~i~~p~g~~~~~~~~y~~~~f~~Gf~eGY~TMD~laal~Fg~iIi~~i~~~g~~~~-k~~~~~~~~a 227 (427)
T PF05525_consen 149 PILLILLAILIIKGIFSPIGPPQAPSGAYASNPFFKGFLEGYQTMDALAALAFGIIIINAIRQKGYKDK-KEIKKYTIKA 227 (427)
T ss_pred HHHHHHHHHHHHHHHHcCCCCccccchhhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCCCH-HHHHHHHHHH
Confidence 99999999999888876332222111 11111 1121111 12333444433333333334443 3444444
Q ss_pred -HHHHHHHHHHHHHHHHHHhccccc--cccCCCChHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008094 297 -LGSLLICAALYVGVSLVLTGMVPY--KFLDEDAPLSDAFASRGLKYVSVLISFGAVAGLTTTLLVGLYVQSRLYLGLGR 373 (578)
Q Consensus 297 -~~s~~~~~i~y~~~~~~~~~~~~~--~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~ 373 (578)
..+...-.++|....+.-....+. ++.+..+.+.++.++..|+.+..++.+.+.++|+.+..+...+++.....
T Consensus 228 g~ia~~lL~~IY~gL~~lGa~~~~~~~~~~~g~~lL~~i~~~~~G~~G~~ll~iiv~lACLTTaIGL~~a~a~yf~~--- 304 (427)
T PF05525_consen 228 GLIAGILLALIYGGLAYLGATSSGSFPDDINGAELLSQIANHLFGSAGQILLGIIVFLACLTTAIGLISACAEYFSE--- 304 (427)
T ss_pred HHHHHHHHHHHHHHHHHHccCCcccccCCCCHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 444444445555544433332221 11222335666777778888899999999999999999998888876544
Q ss_pred cCCCchhhhhhcCCCCcchhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHH
Q 008094 374 DGLLPSIFAKVHPKRHTPVHSQVWVGIVAGILAGLFNVRVLSHILSVGTLTGY 426 (578)
Q Consensus 374 d~~lP~~~~~~~~r~~~P~~ail~~~~i~~i~~~~~~~~~l~~~~~~~~l~~y 426 (578)
..| +.+++.......+.........++.+..+..=...+.|
T Consensus 305 ----------~~~--kisY~~~v~i~~i~S~~ian~Gl~~Ii~~s~PiL~~iY 345 (427)
T PF05525_consen 305 ----------LFP--KISYKVWVIIFTIFSFIIANLGLDQIIKISVPILMFIY 345 (427)
T ss_pred ----------Hhc--ccChHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHh
Confidence 332 34444333333332333344566777666654444444
|
They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane |
| >TIGR02119 panF sodium/pantothenate symporter | Back alignment and domain information |
|---|
Probab=98.18 E-value=0.016 Score=62.04 Aligned_cols=283 Identities=14% Similarity=0.080 Sum_probs=137.3
Q ss_pred ccccChhHHHHHHhhhhhhhhHHHHH-HHHHhhhCcH-HHHHH---HHHHHHHHHHHHHHHHHhhcCCCCccchhhhhHH
Q 008094 58 LRRLGLFELVLIGVGASVGAGIFVVT-GTVARDAGPG-VTISF---LLAGAASVLNALCYAELASRFPAVVGGAYLYAYT 132 (578)
Q Consensus 58 ~r~l~~~~~~~~~i~~~ig~g~~~~~-~~~~~~~G~~-~~~~~---ii~~l~~~~~a~~~ael~~~~P~~~GG~y~~~~~ 132 (578)
.|+++++....-.+++.+|++-+... +..++ .|-. ..+.+ ..+.++....+.-+.++.++.. .-..++|.++
T Consensus 39 gr~l~~~~~~~s~~at~~s~~t~~g~~g~~y~-~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~T~~e~l~~ 115 (471)
T TIGR02119 39 GRSMGGFVLAMTLVATYGSASSFIGGPGIAYN-YGLGWVLLAMIQVPTGYFVLGVLGKKFAIISRKYN--AITINDVLKA 115 (471)
T ss_pred CCcccHHHHHHHHHHHHhhHHHHcCcHHHHHH-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CccHHHHHHH
Confidence 47899998877777777776666543 33443 3432 11111 1111111222333445555543 3578889999
Q ss_pred Hhchh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCccccCCCccccccchhhhHHHHHHHHHHHHH
Q 008094 133 AFNEL-TAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIV 211 (578)
Q Consensus 133 ~~g~~-~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 211 (578)
-+|+. ....++....+...........+.+..++.+++. +.+. . +.+...+.....
T Consensus 116 Ryg~~~~~~~~~i~~i~~~~~~~~~ql~g~g~~l~~~~gi--------~~~~------------~---iii~~~iv~iYt 172 (471)
T TIGR02119 116 RYNNKFLVWLSSISLLVFFFSAMVAQFIGGARLIESLTGL--------SYLT------------A---LFIFSSSVLIYT 172 (471)
T ss_pred HcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--------CHHH------------H---HHHHHHHHHHHH
Confidence 89954 4555555444444444444455555555555431 1111 0 111122233334
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHhhhhccc-------------ccCCCCCCCCCChH--HHHHHH-HHHHhhccch
Q 008094 212 LCWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEV-------------DVSNWSPFAPNGFK--EILTGA-TVVFFAYVGF 275 (578)
Q Consensus 212 ~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-------------~~~~~~~~~~~g~~--~~~~~~-~~~~~~~~G~ 275 (578)
..-|.|...+.+.+-..+.++..+++.+...... +.+.++++.+++.. .+.... ....+...+.
T Consensus 173 ~~GG~~av~~td~iQ~~v~~~~~~~~~~~~l~~~gG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 252 (471)
T TIGR02119 173 TFGGFRAVALTDAIQGIVMFTGTTILLIAVIKAGGGVEKIMEKLKDIDPNLITPFGGDGGLTKPFVASFWILVGIGVIGL 252 (471)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhcCccccCCCCCCcchhhhHHHHHHHHHHHHHhCc
Confidence 4456666555544444443333322222211110 11111222222211 111111 1112222333
Q ss_pred HHHhhhhhhhcCCCCChhHHHHHHHHHHHHHHHHHHHHHhcc--ccccccCCCChHHHHHHHcChhHHHHHHHHHHHHHH
Q 008094 276 DAVANSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGM--VPYKFLDEDAPLSDAFASRGLKYVSVLISFGAVAGL 353 (578)
Q Consensus 276 e~~~~~~~E~k~P~k~ip~a~~~s~~~~~i~y~~~~~~~~~~--~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (578)
....+-.-..||+ |+..|+...+.+....++....+.-... ..++..+.|..+.....+..+++...++..+++.+.
T Consensus 253 p~~~~R~~aak~~-~~a~~~~~~~~~~~~~~~~~~~~~G~~a~~~~p~~~~~d~~~p~~~~~~lp~~~~gl~~a~llaA~ 331 (471)
T TIGR02119 253 PQTAVRCMSYKDS-KAMHRAMIIGTIVVGIIMLGMHLAGVLGRAVIPDLTVPDKVIPLLAIKVLPPILAGIFLAAPMAAI 331 (471)
T ss_pred hHHHHHHHhcCCH-HHHhhhHhHHHHHHHHHHHHHHHHHHhhhhhccCCCCccchHHHHHHHHchHHHHHHHHHHHHHHH
Confidence 3334445556775 6788888888766665554443332111 112211234556666666677788777777778888
Q ss_pred HHHHHHHHHHHHHH
Q 008094 354 TTTLLVGLYVQSRL 367 (578)
Q Consensus 354 ~~~~~~~~~~~sR~ 367 (578)
+++..+.+.+.+=.
T Consensus 332 mST~~s~l~~~ss~ 345 (471)
T TIGR02119 332 MSTVNSLLLQSSST 345 (471)
T ss_pred HHHHHHHHHHHHHH
Confidence 88887777666544
|
Pantothenate (vitamin B5) is a precursor of coenzyme A and is made from aspartate and 2-oxoisovalerate in most bacteria with completed genome sequences. However, some pathogens must import pantothenate. This model describes PanF, a sodium/pantothenate symporter, from a larger family of Sodium/substrate symporters (pfam00474). Several species that have this transporter appear to lack all enzymes of pantothenate biosynthesis, namely Haemophilus influenzae, Pasteurella multocida, Fusobacterium nucleatum, and Borrelia burgdorferi. |
| >TIGR00813 sss transporter, SSS family | Back alignment and domain information |
|---|
Probab=98.16 E-value=0.0082 Score=62.99 Aligned_cols=283 Identities=13% Similarity=0.014 Sum_probs=140.8
Q ss_pred ccccChhHHHHHHhhhhhhhhHHHHHHHHHhhhCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccchhhhhHHHhch-
Q 008094 58 LRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGPGVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNE- 136 (578)
Q Consensus 58 ~r~l~~~~~~~~~i~~~ig~g~~~~~~~~~~~~G~~~~~~~ii~~l~~~~~a~~~ael~~~~P~~~GG~y~~~~~~~g~- 136 (578)
.|+++++....-.+++.++++-+..........|-..++..+...+.....+..+.+.-++.+ .=..++|.++-+|+
T Consensus 2 gr~~~~~~~~~s~~at~~s~~t~ig~~~~~y~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~T~~e~l~~Ryg~~ 79 (407)
T TIGR00813 2 GRSLGGWVVAASLFASYISASQFLGLPGAIYAYGFAIGFYELGALVLLIILGWLFVPIFINNG--AYTMPEYLEKRFGKR 79 (407)
T ss_pred CCCCCcHHHHHHHHHHHhhHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CCchhHHHHHHhCch
Confidence 378888888776667777766555544433334432222222223334455666666665544 35788899998997
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCccccCCCccccccchhhhHHHHHHHHHHHHHHHhhh
Q 008094 137 LTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGV 216 (578)
Q Consensus 137 ~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~ 216 (578)
....+.+....+......+....+.+..+..+.+. | .+. .+.+...++......-|.
T Consensus 80 ~~~~~~~~~~i~~~~~~~~~q~~g~~~il~~~~gi-~-------~~~---------------~~ii~~~i~~~Yt~~GG~ 136 (407)
T TIGR00813 80 ILRGLSVLSLILYIFLYMSVDLFSGALLIELITGL-D-------LYL---------------SLLLLGAITILYTVFGGL 136 (407)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc-h-------HHH---------------HHHHHHHHHHHHHHHcch
Confidence 56666677766666667777777777777766542 1 111 011222222333444555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhccc-------------cc------CCCCC-CCCCC-hHHHHH---HHHHH-Hhh
Q 008094 217 GESSVLNSCMTVVKVIIVIVVIFAGAFEV-------------DV------SNWSP-FAPNG-FKEILT---GATVV-FFA 271 (578)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-------------~~------~~~~~-~~~~g-~~~~~~---~~~~~-~~~ 271 (578)
|.......+=.++.++..+++.+....+. ++ +.++. ..+.. ...+.. +.... .+.
T Consensus 137 ~av~~Td~iQ~~i~~~~~i~~~~~~~~~~GG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 216 (407)
T TIGR00813 137 KAVVWTDTIQAVIMILGTFILPVFAFSEVGGLGTFVEKASQAAPTNPSPDDLYDFFRDPSTSDLPWGAGVFGLPHVALWY 216 (407)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhcCCCccchhhhccCCCCCcccCCChHHHHhChHHHHHHH
Confidence 55554443333333322222221111110 00 00110 00000 001100 11111 111
Q ss_pred ccchHHHhhhhhhhcCCCCChhHHHHHHHHHHHHHHHHHHHHHhc---ccc----ccc----cCCCChHHHHHHHcChhH
Q 008094 272 YVGFDAVANSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTG---MVP----YKF----LDEDAPLSDAFASRGLKY 340 (578)
Q Consensus 272 ~~G~e~~~~~~~E~k~P~k~ip~a~~~s~~~~~i~y~~~~~~~~~---~~~----~~~----~~~~~p~~~~~~~~~~~~ 340 (578)
+.. ....+-.=-.||+ |+..|++..+.....+++.+..+.-.. ..+ ..+ .+.+..+.....+..+++
T Consensus 217 ~~~-~~~~qR~~a~ks~-~~~r~~~~~~~~~~~~~~~~~~l~G~~a~~~~~~~~p~~~~~~~~~~~~~~p~~~~~~lp~~ 294 (407)
T TIGR00813 217 WTN-QVIVQRCLAAKSA-KHAKKGCLISGVLKLLPMFGAVLPGLIARALYTDIDPALAGAVNQNSDQAYPLLVQELMPPG 294 (407)
T ss_pred hcC-HHHhhHHHhcCCH-HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcccChhhhcccCCChhhHHHHHHHHHcCcc
Confidence 100 0112222234554 678888888876665555433332221 122 111 133445666677777788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008094 341 VSVLISFGAVAGLTTTLLVGLYVQSRL 367 (578)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~sR~ 367 (578)
+..++.++.+.+.+++..+.+.+.+-.
T Consensus 295 l~gl~~agilaA~mST~~s~l~a~ss~ 321 (407)
T TIGR00813 295 LAGLFLAAILAAVMSTLSSQLNSASTV 321 (407)
T ss_pred hHHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 888888888888888887777666654
|
have different numbers of TMSs. A 13 TMS topology with a periplasmic N-terminus and a cytoplasmic C-terminus has been experimentally determined for the proline:Na+ symporter, PutP, of E. coli. |
| >COG0733 Na+-dependent transporters of the SNF family [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.0091 Score=61.16 Aligned_cols=245 Identities=14% Similarity=0.118 Sum_probs=124.1
Q ss_pred hHHHHHHhhhhhhhhHHHHHHHHH-hhhCcHHHHHHHHHHHH-HHHHHHHHHHHhhcCCCCccchhhhhHHHhchhhHHH
Q 008094 64 FELVLIGVGASVGAGIFVVTGTVA-RDAGPGVTISFLLAGAA-SVLNALCYAELASRFPAVVGGAYLYAYTAFNELTAFL 141 (578)
Q Consensus 64 ~~~~~~~i~~~ig~g~~~~~~~~~-~~~G~~~~~~~ii~~l~-~~~~a~~~ael~~~~P~~~GG~y~~~~~~~g~~~g~~ 141 (578)
.....-++|+.+|.|=....+... +++|.+.++-+++..++ .++ ...+|++-=--.+.+..-.|-+. .++.....
T Consensus 12 lGFILAa~GsAVGLGNiWrFPy~~~~nGGgAFll~yli~~l~~GiP--lli~Ef~iGr~~~~~~~~a~~~l-~~~~~~~~ 88 (439)
T COG0733 12 LGFILAAAGSAVGLGNIWRFPYMAGENGGGAFLLPYLIFLLLVGIP--LLLAEFAIGRRGRKNAVGAFRKL-APKKKWEW 88 (439)
T ss_pred HHHHHHHHHHHhcccccccCCeEeeecCcchHHHHHHHHHHHHhHH--HHHHHHHhhhhcCCChhHHHHHh-ccCccchh
Confidence 344455677888887777766644 55666666655555444 333 23455442211101222222222 21222333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-cccCCCCccccCCCccccccchhhhHHHHHHHHHHHHHHHhhhHH-H
Q 008094 142 VFAQLMLDYHIGAASIARSLASYVVSILELFP-FFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGVGE-S 219 (578)
Q Consensus 142 ~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~-~ 219 (578)
.||.-.+........++...+-.+.++..... .+. .+.+.......+...+.......-.+++.+...+..+|++. .
T Consensus 89 ~G~~gv~~~~~i~sfYsvI~GWil~Y~~~s~tg~~~-~~~~~~~~~f~~~~~~~~~~~~~~~~~~~lt~~iv~~GV~~GI 167 (439)
T COG0733 89 IGWFGVLGGFLILSFYSVIGGWILSYLVKSLTGALP-DTGEQFAQLFGQTISNPGLAVIFHLLFLVLTALIVSRGVKKGI 167 (439)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC-CChhHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHhHHhhH
Confidence 44443333333333444444433333332211 111 00000000001111122223334456666677777889876 7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcccc---------cCCCCCCCCCChHHHHHHHHHHHhhcc-chHHHhhhhhhhcCCC
Q 008094 220 SVLNSCMTVVKVIIVIVVIFAGAFEVD---------VSNWSPFAPNGFKEILTGATVVFFAYV-GFDAVANSAEESKKPQ 289 (578)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~i~~~~~~~---------~~~~~~~~~~g~~~~~~~~~~~~~~~~-G~e~~~~~~~E~k~P~ 289 (578)
.|.++++....++.++++.+-.....+ ..+|+.+.+ ...+..++-.++|+.. |+-....++.-.++ +
T Consensus 168 Ek~~kimMP~Lfvl~i~Lvi~~~tLpGA~~G~~f~l~PD~s~l~~--~~v~~~AlGQ~FFsLSlG~g~mitYsSYL~k-~ 244 (439)
T COG0733 168 EKANKIMMPLLFVLFIILVIRAVTLPGAMEGLKFLFKPDFSKLTD--PKVWLAALGQAFFSLSLGFGIMITYSSYLSK-K 244 (439)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCccHHHHHHHHhcCCHHHcCc--hhhHHHHHHHHHHHHHHHHHHHHHHHhhcCc-c
Confidence 888888877776666665554332211 011222211 3356667777888774 88888888888876 6
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHh
Q 008094 290 RDLPIGILGSLLICAALYVGVSLVLT 315 (578)
Q Consensus 290 k~ip~a~~~s~~~~~i~y~~~~~~~~ 315 (578)
.|+++...........+-++..+.+.
T Consensus 245 ~~l~~sa~~v~~~n~~~s~lAGl~If 270 (439)
T COG0733 245 SDLVSSALSIVLLNTLISLLAGLVIF 270 (439)
T ss_pred cchhhhHHHHHHHHHHHHHHHHHHHH
Confidence 78999877777666666555555443
|
|
| >PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.035 Score=57.59 Aligned_cols=273 Identities=14% Similarity=0.058 Sum_probs=141.6
Q ss_pred hhhhhhhhHHHHHHHHHhhhCcH---HHHHHHHHHHHHHHHHHHHHHHhhcCCCCccchhhhhHHHhchhhHHHHHHHHH
Q 008094 71 VGASVGAGIFVVTGTVARDAGPG---VTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNELTAFLVFAQLM 147 (578)
Q Consensus 71 i~~~ig~g~~~~~~~~~~~~G~~---~~~~~ii~~l~~~~~a~~~ael~~~~P~~~GG~y~~~~~~~g~~~g~~~g~~~~ 147 (578)
++.-.|+|=...|+..=.++|.. +.++++++++..=..+. ++-.. . .|+.....+| .||..|.+......
T Consensus 18 FamFFGAGNLIFPp~LG~~aG~~~~~a~~GF~iT~VglPlLgi----iava~-~-~g~~~~l~~r-v~~~f~~~f~~~i~ 90 (439)
T PRK15433 18 FALFVGAGNIIFPPMVGLQAGEHVWTAAFGFLITAVGLPVLTV----VALAK-V-GGGVDSLSTP-IGKVAGVLLATVCY 90 (439)
T ss_pred HHHHhcCcchhccHHHHHHhcchHHHHHHHHHHHHHHHHHHHH----HHHhh-c-CCCHHHHhhh-cchHHHHHHHHHHH
Confidence 34446777777777666678863 66677777766332222 11122 2 2566666665 67776665433222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCccccCCCcccccc-chhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 008094 148 LDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGG-TLSINILAPILLALLTIVLCWGVGESSVLNSCM 226 (578)
Q Consensus 148 l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~ 226 (578)
+.--... +.....+.... ....+ +.++ .....+..+++..+..++..+.-|...++-+++
T Consensus 91 l~IGP~~-aiPRtaavsfE----------m~i~p--------~~~~~~~~~~ifs~iFF~i~~~l~l~p~klvd~iGK~L 151 (439)
T PRK15433 91 LAVGPLF-ATPRTATVSFE----------VGIAP--------LTGDSALPLFIYSLVYFAIVILVSLYPGKLLDTVGNFL 151 (439)
T ss_pred HHHhhcc-ccCCccccchh----------heeec--------cCCcccHHHHHHHHHHHHHHHHHHcChhhHHHHhHHHH
Confidence 1110000 00011110000 00111 1111 122335666777777788888889999999999
Q ss_pred HHHHHHHHHHHHhhhhcccccCCCCCCCCCChHHHHHHHH--------HHHhhccchHHHhhhhhhhcCCCCChhH----
Q 008094 227 TVVKVIIVIVVIFAGAFEVDVSNWSPFAPNGFKEILTGAT--------VVFFAYVGFDAVANSAEESKKPQRDLPI---- 294 (578)
Q Consensus 227 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~~~~~~~~~--------~~~~~~~G~e~~~~~~~E~k~P~k~ip~---- 294 (578)
+-+.++.++++++.++.+...+.-.+..+..-..+..++. .+...|...-..+--....||+ |.+-|
T Consensus 152 TP~LL~~l~~lii~~i~~p~g~~~~~~~~y~~~~f~~Gf~eGY~TMDalaal~Fg~iii~~i~~~G~~~~-~~~~k~t~~ 230 (439)
T PRK15433 152 APLKIIALVILSVAAIVWPAGSISTATEAYQNAAFSNGFVNGYLTMDTLGAMVFGIVIVNAARSRGVTEA-RLLTRYTVW 230 (439)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCcchhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCCH-HHHHHHHHH
Confidence 9999999988888887763211111100000011222221 2333333333333333345554 33444
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccc-cccc-CCCChHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008094 295 GILGSLLICAALYVGVSLVLTGMVP-YKFL-DEDAPLSDAFASRGLKYVSVLISFGAVAGLTTTLLVGLYVQSRLYLG 370 (578)
Q Consensus 295 a~~~s~~~~~i~y~~~~~~~~~~~~-~~~~-~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~ 370 (578)
+-..+.+.-.++|....+.-....+ .++. +..+-......+..++++..++.+.+.++|+++..+...++++....
T Consensus 231 ag~ia~~~L~~vY~gL~~lGa~s~~~~~~~~~g~~il~~~~~~~~G~~G~~ll~iiv~lACLTTaIGLi~a~a~~f~~ 308 (439)
T PRK15433 231 AGLMAGVGLTLLYLALFRLGSDSASLVDQSANGAAILHAYVQHTFGGGGSFLLAALIFIACLVTAVGLTCACAEFFAQ 308 (439)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCcccccCCCcHhHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444444455556555554333222 1111 11222344556667788889999999999999999999888876443
|
|
| >KOG1305 consensus Amino acid transporter protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.0066 Score=62.89 Aligned_cols=250 Identities=14% Similarity=0.137 Sum_probs=131.2
Q ss_pred ccccChhHHHHHHhhhhhhhhHHHHHHHHHhhhCc-HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccchhhhhHHHhch
Q 008094 58 LRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGP-GVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNE 136 (578)
Q Consensus 58 ~r~l~~~~~~~~~i~~~ig~g~~~~~~~~~~~~G~-~~~~~~ii~~l~~~~~a~~~ael~~~~P~~~GG~y~~~~~~~g~ 136 (578)
+++-+.+..+.--..++.|+|++..|. +.+..|- ..++.....+.+.....+.+.+.+...++ . ..-.-..+.+|+
T Consensus 3 ~~~~s~~~~v~nl~~ti~GaGIl~~P~-afk~~Giv~gi~li~~~a~~s~~sl~~l~~~a~~~~~-~-ty~~l~~~~~g~ 79 (411)
T KOG1305|consen 3 SGKTSFRSAVFNLVNTIMGAGILAMPY-AFKTAGLLLGILLIVLSAFLSLLSLYLLSKCAKKSGE-R-TYSSLGDLIFGK 79 (411)
T ss_pred CCccchhhhHHHHHhhhhccHHHHhHH-HHHHhcHHHHHHHHHHHHHHHHhHHHHHHHhhhhcCC-C-CHHHHHHHHcCC
Confidence 455677788777788999999998876 5566775 46667777788888888889999999988 3 333334444555
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCccccCCCccccccchhhhHHHHHHHHHHHHHHHhhh
Q 008094 137 LTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGV 216 (578)
Q Consensus 137 ~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~ 216 (578)
...+......- .+..+..++..-..+.+..+... . +.+ .|... + +.+......+....++.-+.+ .+..
T Consensus 80 ~g~~~~~v~~~-~~~~g~i~yliiigd~~p~~~~~-~-~~~---~~~~~--~-~~~~~~~ill~~~~~i~pLsl--~k~l 148 (411)
T KOG1305|consen 80 LGKVDAAVAVK-CFGVGMVSYLIIIGDLLPGFIRS-L-FLD---EEGGS--H-YLDRNFLILLVLLFIILPLSL--LKNL 148 (411)
T ss_pred CceeeehhhHH-hhhccceEEEEEEccccchhhhh-c-ccc---ccccc--c-cccceeEeehHHHHHHHHHHH--HHhh
Confidence 43211111000 00000000000000111111100 0 000 00000 0 001110011112112222222 2222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhccccc--CCCCCCCCCCh--HHHHHHHHHHHhhccchHHHhhhhhhhcCCC-CC
Q 008094 217 GESSVLNSCMTVVKVIIVIVVIFAGAFEVDV--SNWSPFAPNGF--KEILTGATVVFFAYVGFDAVANSAEESKKPQ-RD 291 (578)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~g~--~~~~~~~~~~~~~~~G~e~~~~~~~E~k~P~-k~ 291 (578)
...+. ....++...+..++..+.-....+. ....+..+++. .++..++....++|...+....+-.|+|||. |+
T Consensus 149 ~~Lk~-tS~~s~~~~~~fv~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pi~~faf~Ch~n~~~i~~El~~~s~~~ 227 (411)
T KOG1305|consen 149 DSLKY-TSALSLASVVYFVVLVVYKYFQGPCALGRLSYLVPNLSSFSSLFYALPIFVFAFTCHSNVFPIYNELKDRSVKK 227 (411)
T ss_pred hhHHH-HHHHHHHHHHHHHHHHHHHHHhcccccCCcccccCCcchhhhhhhhhhhhheeeeccccceeeeeeeeCchHHH
Confidence 22222 2223333222222222222222111 11112223332 4788899999999999999999999999996 67
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhccccccc
Q 008094 292 LPIGILGSLLICAALYVGVSLVLTGMVPYKF 322 (578)
Q Consensus 292 ip~a~~~s~~~~~i~y~~~~~~~~~~~~~~~ 322 (578)
+-+....+...+.++|.......+...+++.
T Consensus 228 i~~v~~~~~~~~~~iy~~~g~~GYL~Fg~~v 258 (411)
T KOG1305|consen 228 IQRVSNIAIILATLIYLLTGLFGYLTFGDLV 258 (411)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhheecccc
Confidence 8888899999999999999988887777653
|
|
| >PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.0026 Score=66.77 Aligned_cols=288 Identities=16% Similarity=0.136 Sum_probs=125.0
Q ss_pred ccccChhHHHHHHhhhhhhhhHHHH-HHHHHhhhCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccchhhhhHHHhch
Q 008094 58 LRRLGLFELVLIGVGASVGAGIFVV-TGTVARDAGPGVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNE 136 (578)
Q Consensus 58 ~r~l~~~~~~~~~i~~~ig~g~~~~-~~~~~~~~G~~~~~~~ii~~l~~~~~a~~~ael~~~~P~~~GG~y~~~~~~~g~ 136 (578)
.|+++++....-.+++.+|++-+.. ++..+. .|....+..+...+...+..+.++.--++.. .=..++|.++-+|+
T Consensus 5 gr~~~~~~~~~s~~at~~s~~t~~G~~g~~y~-~G~~~~~~~~~~~~~~~~~~~~~~~~~r~~~--~~T~~e~~~~Ryg~ 81 (406)
T PF00474_consen 5 GRSLGWWVVAFSLVATWISAWTFIGFPGFAYS-YGISGLWYAIGYAIGFLLFALFFAPRLRRSG--AVTIPEYLEKRYGS 81 (406)
T ss_dssp -S---HHHHHHHHHHHHSSHHHHTHHHHHHHH-T-GGGGHHHHHHHHHHHHHHHHTHHHHHHTT----SHHHHHHHHT-H
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCcceeeeccccchhHHHHHHHHHHhhcccc--hhhhhhhhhhhcCC
Confidence 3778888777666667777665655 444444 4543233323333333444444454444333 35788999999998
Q ss_pred hh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCccccCCCccccccchhhhHHHHHHHHHHHHHHHh
Q 008094 137 LT--AFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCW 214 (578)
Q Consensus 137 ~~--g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 214 (578)
.. ..+.+....+......+....+.+..++.+.+. | .+ . .+.+...++......-
T Consensus 82 ~~~~~~~~~i~~i~~~~~~~~~q~~~~~~~~~~~~gi-~-------~~--------------~-~~~i~~~i~~iYt~~G 138 (406)
T PF00474_consen 82 KALLRILAAIIIIVFMIPYLAAQLVGGGALLSVLFGI-P-------YN--------------T-AILIVGVIVIIYTFFG 138 (406)
T ss_dssp HH-HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT----------HH--------------H-HHHHHHHHHHHTTCTT
T ss_pred chhhhhhcccccchhhhhhhhccccccccchhhccch-h-------hh--------------H-HHHHHHHHHHHhhhhh
Confidence 77 555555555555555666666666666665432 1 00 0 0111111222222233
Q ss_pred hhHHHH---HHHHHHHHHHHHHHHHHHhh--h-hc-------ccccCCCCCCCCCChHH---HHHHHHHHHhhccchHHH
Q 008094 215 GVGESS---VLNSCMTVVKVIIVIVVIFA--G-AF-------EVDVSNWSPFAPNGFKE---ILTGATVVFFAYVGFDAV 278 (578)
Q Consensus 215 g~~~~~---~~~~~~~~~~~~~~~~~~i~--~-~~-------~~~~~~~~~~~~~g~~~---~~~~~~~~~~~~~G~e~~ 278 (578)
|.|... .+|.++..+..+.+.+.... + .. ..++...+.+.|.+... .............|....
T Consensus 139 Gl~av~~td~iQ~~i~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 218 (406)
T PF00474_consen 139 GLRAVAWTDFIQGVIMIIGAIVVLIFVLSAVGGFGGLFQNLSAAHPNFLDLFNPGGFSMFSSPLFFLSFWIALMLGTFGA 218 (406)
T ss_dssp ------SHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-GGGG-SS--SS-----SSGGGGS-TTHHHHSTHHH
T ss_pred hHhhhhHHHHHHHHHHHHHHHHhhhccchhcCCchhhHHHHhhcCcccccccCCCCcccccchhhhHHHHHHHHhhhccc
Confidence 555444 45544433333333222221 1 10 01111011122332210 010100100111233322
Q ss_pred hhhhhh---hcCCCCChhHHHHHHHHHHHHHHHHHH------HHHhccccc----cccCCCChHHHHHHHcChhHHHHHH
Q 008094 279 ANSAEE---SKKPQRDLPIGILGSLLICAALYVGVS------LVLTGMVPY----KFLDEDAPLSDAFASRGLKYVSVLI 345 (578)
Q Consensus 279 ~~~~~E---~k~P~k~ip~a~~~s~~~~~i~y~~~~------~~~~~~~~~----~~~~~~~p~~~~~~~~~~~~~~~~~ 345 (578)
.++... .||+ |+..|++..+.....+++.... .......|. +.-+.+..+.....+..+++...++
T Consensus 219 p~~~qR~~aak~~-~~ar~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~gl~ 297 (406)
T PF00474_consen 219 PHFWQRFLAAKSP-KTARKGMLIAIIFLIIFYFLTIFIGLIAIALFGLYPDAAGPSLGDPDLAFPYLAAQYLPPGLAGLF 297 (406)
T ss_dssp -HHHHHHHSSSHH-HHHHHHHHHHHGGGTTHHHHHHHHHHHH-HHHHHH-TT--S-SSSGGGHHHHHHT-TS-TTHHHHH
T ss_pred hHHHHHHHhcCCH-HHHHHHHhHHhhhheeeehHHhhhhhhhhcccccccccccccccCCcccchhhhhhhccchhHHHH
Confidence 333322 3544 5777887766544444433311 111112221 1112334566677777788888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 008094 346 SFGAVAGLTTTLLVGLYVQSRLYLGLGRDG 375 (578)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~ 375 (578)
..+.+.+.+++..+.+.+.+-. ++||=
T Consensus 298 ~~~~~aA~~ST~~s~l~a~ss~---~~~Di 324 (406)
T PF00474_consen 298 LAGILAAIMSTADSLLLAISSI---FSRDI 324 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH---HHHHC
T ss_pred HHHHHHhhhHHHHHHHhhhhhh---hhHHh
Confidence 7788888888888877776654 45553
|
Thereby the energy stored in an inwardly directed electrochemical sodium gradient (sodium motive force, SMF) is used to drive solute accumulation against a concentration gradient. The SMF is generated by primary sodium pumps (e.g. sodium/potassium ATPases, sodium translocating respiratory chain complexes) or via the action of sodium/proton antiporters. Sodium/substrate transporters are grouped in different families based on sequence similarities [, ]. One of these families, known as the sodium:solute symporter family (SSSF), contains over a hundred members of pro- and eukaryotic origin []. The average hydropathy plot for SSSF proteins predicts 11 to 15 putative transmembrane domains (TMs) in alpha-helical conformation. A secondary structure model of PutP from Escherichia coli suggests the protein contains 13 TMs with the N terminus located on the periplasmic side of the membrane and the C terminus facing the cytoplasm. The results support the idea of a common topological motif for members of the SSSF. Transporters with a C-terminal extension are proposed to have an additional 14th TM. An ordered binding model of sodium/substrate transport suggests that sodium binds to the empty transporter first, thereby inducing a conformational alteration which increases the affinity of the transporter for the solute. The formation of the ternary complex induces another structural change that exposes sodium and substrate to the other site of the membrane. Substrate and sodium are released and the empty transporter re-orientates in the membrane allowing the cycle to start again.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3DH4_D 2XQ2_A. |
| >TIGR02121 Na_Pro_sym sodium/proline symporter | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.072 Score=57.27 Aligned_cols=42 Identities=12% Similarity=0.050 Sum_probs=30.3
Q ss_pred CChHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008094 326 DAPLSDAFASRGLKYVSVLISFGAVAGLTTTLLVGLYVQSRL 367 (578)
Q Consensus 326 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~ 367 (578)
|..+.....+..++++..++..+++.+.+++..+.+.+.+=.
T Consensus 304 d~~~~~~~~~~~p~~l~gl~~a~ilaA~mST~~s~l~s~ss~ 345 (487)
T TIGR02121 304 ETIFIVLSQILFHPWIAGILLAAILAAIMSTISSQLLVSSSA 345 (487)
T ss_pred chhHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555666667778777777788888888888877777654
|
This family consists of the sodium/proline symporter (proline permease) from a number of Gram-negative and Gram-positive bacteria and from the archaeal genus Methanosarcina. Using the related pantothenate permease as an outgroup, candidate sequences from Bifidobacterium longum and several from archaea are found to be outside the clade defined by known proline permeases. These sequences, scoring between 570 and -40, define the range between trusted and noise cutoff scores. |
| >PRK12488 acetate permease; Provisional | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.096 Score=57.10 Aligned_cols=108 Identities=9% Similarity=-0.097 Sum_probs=62.4
Q ss_pred ccccChhHHHHHHhhhhhhhhHHHHH-HHHHhhhCcHHHHHHHHHHHHHHH-HHHHHHHHhhcCCCCccchhhhhHHHhc
Q 008094 58 LRRLGLFELVLIGVGASVGAGIFVVT-GTVARDAGPGVTISFLLAGAASVL-NALCYAELASRFPAVVGGAYLYAYTAFN 135 (578)
Q Consensus 58 ~r~l~~~~~~~~~i~~~ig~g~~~~~-~~~~~~~G~~~~~~~ii~~l~~~~-~a~~~ael~~~~P~~~GG~y~~~~~~~g 135 (578)
.|+++++...+...++.+++.-|... +..+. .|...++ +.++..+..+ ..+.+++--.+... =..++|.++-||
T Consensus 66 GR~l~~~~~~~si~at~~Sa~sflG~~G~~y~-~G~~~~~-~~~g~~~g~~~~~~~~a~~lr~~g~--~T~~d~l~~Rf~ 141 (549)
T PRK12488 66 GGGLTGMQNGLAIAGDMISAASFLGISAMMFM-NGYDGLL-YALGVLAGWPIILFLIAERLRNLGK--YTFADVVSYRLA 141 (549)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH-hChhHHH-HHHHHHHHHHHHHHHHHHHHHHCCC--cchHHHHHHHcC
Confidence 48899999877777777777666554 44444 4543222 2222222222 23445554444433 356777777776
Q ss_pred -hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008094 136 -ELTAFLVFAQLMLDYHIGAASIARSLASYVVSIL 169 (578)
Q Consensus 136 -~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~ 169 (578)
+....+++....+...........+.+..+..++
T Consensus 142 s~~~r~laai~~i~~~~~yl~~q~~g~g~il~~l~ 176 (549)
T PRK12488 142 QGPVRLTAAFGTLTVVLMYLVAQMVGAGKLIELLF 176 (549)
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5677777776666655555566666666666554
|
|
| >TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.07 Score=55.42 Aligned_cols=242 Identities=14% Similarity=0.045 Sum_probs=131.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccchhhhhHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 008094 93 GVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELF 172 (578)
Q Consensus 93 ~~~~~~ii~~l~~~~~a~~~ael~~~~P~~~GG~y~~~~~~~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~ 172 (578)
.++++.+++.++........+..+.+... ......+..||.+-+.+.+....+..+...+..+...++.+..+.+..
T Consensus 30 ~ai~aiilG~~i~~~~~~l~~~~G~~~Gl---~~~v~sR~~FG~~Gs~~~~~l~~i~~igW~~v~~~~gg~~l~~~~~~~ 106 (386)
T TIGR02358 30 RGLLAILLGHLVGVLLLSAAGVIGADTGL---SAMGSLKLSLGSKGSVLPSLLNLLQLVGWTAVMIIVGAKAASLLGGRL 106 (386)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccCc---CHHHHHHHHHccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46666666666554444444444444333 355666677999888888888888887778888888888888776421
Q ss_pred -ccccCCCCccccCCCccccccchhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhhcccccC-CC
Q 008094 173 -PFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEVDVS-NW 250 (578)
Q Consensus 173 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~ 250 (578)
|. . +. .+...++.++.......|.|...+++++...+..+..+...+....+.+.. .+
T Consensus 107 ~~~---~-~~----------------~~~~~i~~~l~~~~~~~G~~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 166 (386)
T TIGR02358 107 FGE---E-SP----------------MLWILIVGILVTLWLLSGPLAFVWLNNWSVWLLLIATLWLLVVVFSKADLSELW 166 (386)
T ss_pred cCC---C-ch----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhc
Confidence 21 0 00 012223333455666789999999999988877766665554333332211 11
Q ss_pred CCCCCCChHHHHHHHHHHHhh-ccchHHHhhhhhhhcCCCCChhHHHHHHHHHHHHHHHHHHHHHhccccccccCCCChH
Q 008094 251 SPFAPNGFKEILTGATVVFFA-YVGFDAVANSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLDEDAPL 329 (578)
Q Consensus 251 ~~~~~~g~~~~~~~~~~~~~~-~~G~e~~~~~~~E~k~P~k~ip~a~~~s~~~~~i~y~~~~~~~~~~~~~~~~~~~~p~ 329 (578)
++ +.. .++..+.....-. ..+....+.++...|+|| +.-++...+..+...+..+.........++ ++|.
T Consensus 167 ~~--~~~-~s~~~~~~~~~~~~~swa~~~~DysRy~k~~~-~~~~~~~~G~~i~~~~~~~~G~~~~~a~~~-----~d~~ 237 (386)
T TIGR02358 167 NR--AGD-MSFAVAVELVIAMPLSWLPLIADYTRFARNPR-HVFLGTVLGYFIGSCWMYFLGLAVTLATGQ-----TDII 237 (386)
T ss_pred CC--CCC-ccHHHHHHHHHHHHHHHHHHccchhhhcCCCc-ceehHHHHHHHHHHHHHHHHHHHHHHhcCC-----CCHH
Confidence 11 111 2333333222211 122233677777788764 455666666666655555555444433332 2333
Q ss_pred HHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008094 330 SDAFASRGLKYVSVLISFGAVAGLTTTLLVGLYVQSRLYLG 370 (578)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~ 370 (578)
+.+...+... ...+..+++..++.....++.+=-+.+
T Consensus 238 -~~~~~~g~~~---~~~~~~~l~~~~~n~~N~ys~~l~l~~ 274 (386)
T TIGR02358 238 -SILAGAGLGI---PALLIILLSTVTTTFMDIYSAAISTGN 274 (386)
T ss_pred -HHHHhccHHH---HHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 4444443321 223344555555544455555444444
|
On the basis of a phylogenomic study of thiamine biosythetic, salvage, and transporter genes and a highly conserved RNA element THI, this protein family has been identified as a probable transporter of hydroxymethylpyrimidine (HMP), the phosphorylated (by ThiD) form of which gets joined (by ThiE) to hydroxyethylthiazole phosphate to make thiamine phosphate. |
| >PRK15419 proline:sodium symporter PutP; Provisional | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.11 Score=56.03 Aligned_cols=42 Identities=14% Similarity=0.071 Sum_probs=30.6
Q ss_pred CChHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008094 326 DAPLSDAFASRGLKYVSVLISFGAVAGLTTTLLVGLYVQSRL 367 (578)
Q Consensus 326 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~ 367 (578)
|..+.....+..++++..++..+.+.+.+++..+.+.+.|=.
T Consensus 311 d~~~~~l~~~~lp~~l~gl~~a~ilAA~mST~~s~l~a~ss~ 352 (502)
T PRK15419 311 ERVFIELAQILFNPWIAGILLSAILAAVMSTLSCQLLVCSSA 352 (502)
T ss_pred chHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444556666667778877888888888888888877777643
|
|
| >PRK00701 manganese transport protein MntH; Reviewed | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.11 Score=54.83 Aligned_cols=74 Identities=12% Similarity=0.085 Sum_probs=41.4
Q ss_pred hCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcc-chhhhhHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008094 90 AGPGVTISFLLAGAASVLNALCYAELASRFPAVVG-GAYLYAYTAFNELTAFLVFAQLMLDYHIGAASIARSLASYVVS 167 (578)
Q Consensus 90 ~G~~~~~~~ii~~l~~~~~a~~~ael~~~~P~~~G-G~y~~~~~~~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~ 167 (578)
-|-..+|..+++.++ ...+-|++.+.-...| |.-.-+++-+|+.+++.......++.......+..+.+.-++.
T Consensus 63 ~Gy~LLW~llls~~~----~~~~Q~~~~RlgivTG~~l~~~ir~~~~~~~~~~~~~~~~l~~~~~~~~e~~G~a~al~l 137 (439)
T PRK00701 63 FGYTLLWVILLSNLM----AMLLQSLSAKLGIATGRDLAQACRDRYPRPVVWFLWIQAELAIMATDLAEVIGAAIALKL 137 (439)
T ss_pred HCHHHHHHHHHHHHH----HHHHHHHHhHhhhhcCCCHHHHHHHHCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555554444 4455566655554334 6777888888988877665554445444444444444444433
|
|
| >PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2 | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.1 Score=53.72 Aligned_cols=46 Identities=11% Similarity=0.057 Sum_probs=38.0
Q ss_pred ChHHHHHHHcCh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008094 327 APLSDAFASRGL-KYVSVLISFGAVAGLTTTLLVGLYVQSRLYLGLG 372 (578)
Q Consensus 327 ~p~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a 372 (578)
+...+.++...+ ++...++.++++.+.+++..+...+.+|.+.+.-
T Consensus 239 ~~~~~~L~~~~G~~~a~~lF~igl~~a~fss~i~~~~~~~~~~~~~~ 285 (358)
T PF01566_consen 239 AQAAQALEPLLGSPWARYLFAIGLFAAGFSSSITATLAGAYVLADFL 285 (358)
T ss_pred HHHHHHHHHhcCchHHHHhHHHHHHHHHHhhHHHhccccceehHhhh
Confidence 456677787777 7999999999999999999998888888776655
|
The NRAMP family is a novel family of functionally related proteins defined by a conserved hydrophobic core of ten transmembrane domains []. Nramp1 is an integral membrane protein expressed exclusively in cells of the immune system and is recruited to the membrane of a phagosome upon phagocytosis. Nramp2 is a multiple divalent cation transporter for Fe2+, Mn2+ and Zn2+ amongst others. It is expressed at high levels in the intestine; and is major transferrin-independent iron uptake system in mammals []. The yeast proteins Smf1 and Smf2 may also transport divalent cations []. The natural resistance of mice to infection with intracellular parasites is controlled by the Bcg locus, which modulates the cytostatic/cytocidal activity of phagocytes. Nramp1, the gene responsible, is expressed exclusively in macrophages and poly-morphonuclear leukocytes, and encodes a polypeptide (natural resistance-associated macrophage protein) with features typical of integral membrane proteins. Other transporter proteins from a variety of sources also belong to this family.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane |
| >PRK10484 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.15 Score=55.44 Aligned_cols=82 Identities=11% Similarity=-0.071 Sum_probs=48.0
Q ss_pred hcCCCCChhHHHHHHHHHHHHHHHHHHH---HHhccccccccCCCChHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHH
Q 008094 285 SKKPQRDLPIGILGSLLICAALYVGVSL---VLTGMVPYKFLDEDAPLSDAFASRGLKYVSVLISFGAVAGLTTTLLVGL 361 (578)
Q Consensus 285 ~k~P~k~ip~a~~~s~~~~~i~y~~~~~---~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (578)
.||+ |+..|+...+.....+++....+ ......|++..+.|..+.....+..++++..++..+++.+.+++..+.+
T Consensus 270 ak~~-k~a~~~~~~~~~~~~~~~~~~~~~G~~a~~~~p~~~~~~d~~~p~~~~~~lp~~l~Gl~~a~ilAA~mST~~s~l 348 (523)
T PRK10484 270 AKNL-AEGQKGALLAAFFKLLGPLILVLPGIIAFHLYGDGLPNADMAYPTLVNDVLPVPLVGFFAAVLFGAILSTFNGFL 348 (523)
T ss_pred CCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCChhhHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHH
Confidence 5664 56777777765544443332221 1122223322234555666677777777777777777888888877777
Q ss_pred HHHHHH
Q 008094 362 YVQSRL 367 (578)
Q Consensus 362 ~~~sR~ 367 (578)
.+.|-.
T Consensus 349 ~s~st~ 354 (523)
T PRK10484 349 NSASTL 354 (523)
T ss_pred HHHHHH
Confidence 766654
|
|
| >TIGR02711 symport_actP cation/acetate symporter ActP | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.16 Score=55.39 Aligned_cols=108 Identities=12% Similarity=-0.048 Sum_probs=55.2
Q ss_pred ccccChhHHHHHHhhhhhhhhHHHH-HHHHHhhhCcHHHHHHHHHHHHHH-HHHHHHHHHhhcCCCCccchhhhhHHHhc
Q 008094 58 LRRLGLFELVLIGVGASVGAGIFVV-TGTVARDAGPGVTISFLLAGAASV-LNALCYAELASRFPAVVGGAYLYAYTAFN 135 (578)
Q Consensus 58 ~r~l~~~~~~~~~i~~~ig~g~~~~-~~~~~~~~G~~~~~~~ii~~l~~~-~~a~~~ael~~~~P~~~GG~y~~~~~~~g 135 (578)
.|+++++....-..++.+++.-|.. ++..+. .|...++.. ++..+.. ...+.++|--++.-. =...+|.++-|+
T Consensus 66 Gr~~~~~~~g~si~at~~SaasflG~~G~~y~-~G~~~~~~~-~g~~~~~~i~~~~~a~~lrr~g~--~T~~d~l~~Rf~ 141 (549)
T TIGR02711 66 GGNITGFQNGLAIAGDYMSAASFLGISALVYT-SGYDGLIYS-LGFLVGWPIILFLIAERLRNLGR--YTFADVASYRLK 141 (549)
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH-hChHHHHHH-HHHHHHHHHHHHHHHHHHHHcCC--ccHHHHHHHHcC
Confidence 4789998765555555566544444 343443 454322211 2222222 333445665444332 345566666665
Q ss_pred -hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008094 136 -ELTAFLVFAQLMLDYHIGAASIARSLASYVVSIL 169 (578)
Q Consensus 136 -~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~ 169 (578)
|....+.+....+...........+.+..++.++
T Consensus 142 s~~~r~l~ai~~i~~~~~yl~~ql~g~g~il~~~~ 176 (549)
T TIGR02711 142 QRPIRILSACGSLVVVALYLIAQMVGAGKLIELLF 176 (549)
T ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666665555544444455555555555554
|
Members of this family belong to the Sodium:solute symporter family. Both members of this family and other close homologs tend to be encoded next to a member of Pfam family pfam04341, a set of uncharacterized membrane proteins. The characterized member from E. coli is encoded near and cotranscribed with the acetyl coenzyme A synthetase (acs) gene. Proximity to an acs gene was used as one criterion for determining the trusted cutoff for this model. Closely related proteins may differ in function and are excluded by the high cutoffs of this model; members of the family of phenylacetic acid transporter PhaJ can score as high as 1011 bits. |
| >COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.15 Score=52.84 Aligned_cols=70 Identities=16% Similarity=0.053 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCcc-chhhhhHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008094 100 LAGAASVLNALCYAELASRFPAVVG-GAYLYAYTAFNELTAFLVFAQLMLDYHIGAASIARSLASYVVSIL 169 (578)
Q Consensus 100 i~~l~~~~~a~~~ael~~~~P~~~G-G~y~~~~~~~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~ 169 (578)
...++..+.++..-|++.+.-..+| |.-.-+++-++|.+++.......++.....-.+..+.+-.++.++
T Consensus 52 ~vills~l~~~~~Q~~~arLgivTG~~laq~ir~~y~~~~~~~~~~~~~i~~~at~iae~~G~aial~ll~ 122 (416)
T COG1914 52 WVILLSNLMAYILQELSARLGIVTGKGLAEAIRERYLPGLGILLWILAEIAGIATDIAEVAGIAIALNLLF 122 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3333444444455555554433222 356666777888888877666666655555555555555555543
|
|
| >PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.0039 Score=66.21 Aligned_cols=170 Identities=14% Similarity=0.109 Sum_probs=88.8
Q ss_pred cccccChhHHHHHHhhhhhhhhHHHHHHHHHhhh-Cc-HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccchhhhhHHHh
Q 008094 57 LLRRLGLFELVLIGVGASVGAGIFVVTGTVARDA-GP-GVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAF 134 (578)
Q Consensus 57 l~r~l~~~~~~~~~i~~~ig~g~~~~~~~~~~~~-G~-~~~~~~ii~~l~~~~~a~~~ael~~~~P~~~GG~y~~~~~~~ 134 (578)
-+|+.++++.+.+=++..+....+..-......+ +. .++++.+++.++........+.++.+.-- ......+..|
T Consensus 5 ~~R~~~~~~~~~iW~~~~~~~~~~~~G~~~~~~gL~~~~ailai~~G~~l~~i~~~~~~~~G~r~Gl---~~~v~sR~~F 81 (440)
T PF02133_consen 5 SERTWSPWSLFWIWFGANISIATFVTGALGVALGLSFWQAILAILIGNLLGAILVALMGIIGPRTGL---PTMVLSRASF 81 (440)
T ss_dssp GG--B-HHHHHHHHCHHH-SCHHH-HHHHHHCCCS-HHHHHHHHHHHHHHHHHHHHHHTHHHHCC------HHHHTTTTS
T ss_pred hcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHHHhcccccccCC---Cchhcchhcc
Confidence 4577889999888777665544444433332222 22 46777777766654444444555544433 3555556679
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-ccccCCCCccccCCCccccccchhhhHHHHHHHHHHHHHHH
Q 008094 135 NELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELF-PFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLC 213 (578)
Q Consensus 135 g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 213 (578)
|..-+.+.+....+..+...+..+...++.+..+.+.. |. ..+... ..........+..++..++......
T Consensus 82 G~~Gs~l~~~l~~i~~igW~av~~~~~g~al~~~~~~~~g~-----~~~~~~---~~~~~~~~~~~~~~~~~~i~~~~~~ 153 (440)
T PF02133_consen 82 GYRGSKLPSLLRAISAIGWFAVNTWLGGQALAALLGIIFGS-----FLWIGN---AIIGIALPLWVCFFIFWLIQTLFAI 153 (440)
T ss_dssp -TTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC----------HH--------------HHHHHHHHHHHHHHC
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCc-----chhhhh---hhhcchhhHHHHHHHHHHHHHHHHh
Confidence 98888888777777777777777788888888776532 10 000000 0000000111222333344555567
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHH
Q 008094 214 WGVGESSVLNSCMTVVKVIIVIVV 237 (578)
Q Consensus 214 ~g~~~~~~~~~~~~~~~~~~~~~~ 237 (578)
.|.+...+++.+...+..+..+.+
T Consensus 154 ~g~~~l~~~~~~~~~~~~~~~~~~ 177 (440)
T PF02133_consen 154 YGMKALRRLAVIAAPILLVVFIGM 177 (440)
T ss_dssp THHHHHHHHHHCCHHHHHHHHHHH
T ss_pred cCHHHHHhHHhhhhHHHHhhhhhe
Confidence 888888888877766554443333
|
Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.; GO: 0015205 nucleobase transmembrane transporter activity, 0015851 nucleobase transport, 0016020 membrane; PDB: 2JLN_A 2JLO_A. |
| >PLN00151 potassium transporter; Provisional | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.031 Score=61.39 Aligned_cols=219 Identities=12% Similarity=0.045 Sum_probs=103.1
Q ss_pred hHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhh---cccccCCCCCCCC---------CChHHHHHHH
Q 008094 198 NILAPILLALLTIVLCWGVGESSVLNSCMTVVKVIIVIVVIFAGA---FEVDVSNWSPFAP---------NGFKEILTGA 265 (578)
Q Consensus 198 ~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~---~~~~~~~~~~~~~---------~g~~~~~~~~ 265 (578)
..+++++++.++.+.-+|....++. +.-+.++=++.+...|+ .+.+++-+..++| ++..+| ..+
T Consensus 275 V~Is~~ILv~LF~~Q~~GT~kVg~~---FgPImllWFl~i~~iGiynI~~~~p~Vl~AlnP~Y~~~Ff~~~~~~gw-~~L 350 (852)
T PLN00151 275 VMISVAFLVILFSVQRFGTSKVGFA---FGPALALWFCSLGGIGIYNLVKYDSSVFRAFNPVYIYYFFKRNSTKAW-SAL 350 (852)
T ss_pred hhHHHHHHHHHHHHHhccchhhhhh---hccHHHHHHHHHHHHHHHHHHhcCHHHHhhhCHHHHHHHHHhCCCceE-EEe
Confidence 4577888888888898998777764 44444444444444443 3333333333333 121111 123
Q ss_pred HHHHhhccchHHHhhhhhhhcCCCCChhHHHHHHHHHHHHHHHHHHHHHhccccccccCCCChHHHHHHHcChhHHHHHH
Q 008094 266 TVVFFAYVGFDAVANSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLDEDAPLSDAFASRGLKYVSVLI 345 (578)
Q Consensus 266 ~~~~~~~~G~e~~~~~~~E~k~P~k~ip~a~~~s~~~~~i~y~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 345 (578)
--++.+.+|.|+.-. +--.-.+|.+-.|-..-+.=+.++--+..-+....-|.+ ..+|+. .....++.+-+
T Consensus 351 GgVvLciTGaEALfA--DLGHFg~~sIqiaw~~~V~P~LlL~Y~GQaA~L~~~p~~---~~npFy----~svP~~~~wP~ 421 (852)
T PLN00151 351 GGCVLCATGSEAMFA--DLGYFSVRSIQLAFTCLVLPCLLLAYMGQAAYLMKNPDS---AEQIFF----SSVPSSLFWPV 421 (852)
T ss_pred cceeeeeccchhhhc--ccCCCCccceeeeehhhHHHHHHHHHcchHHHHhcCccc---ccCcHH----HhCCchhHHHH
Confidence 345678889986532 222333556655543333222222212222222222211 234443 33334444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCch-hhhhhcCC--CC--cchhHHHHHHHHHHHHHhhcCHHHHHHHHHH
Q 008094 346 SFGAVAGLTTTLLVGLYVQSRLYLGLGRDGLLPS-IFAKVHPK--RH--TPVHSQVWVGIVAGILAGLFNVRVLSHILSV 420 (578)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP~-~~~~~~~r--~~--~P~~ail~~~~i~~i~~~~~~~~~l~~~~~~ 420 (578)
.+.+.++..-+..+.+.++=-++.+.-+=|.+|+ +.-|++++ .| .|..-.+++.....+...+-+.+.+.+...+
T Consensus 422 ~vlAtlAaIIASQA~ISgtFSii~Qai~Lg~fPRvkIvHTS~~~~GQIYIP~vNw~Lmv~~i~v~l~F~~s~~l~~AYGi 501 (852)
T PLN00151 422 FLIANLAALIASRAMTTATFSCIKQSMALGCFPRLKIIHTSRKFMGQIYIPVINWFLLVMCLVVVCSFRSITDIGNAYGI 501 (852)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceEEeCCCccCCceeeHHHHHHHHHHHHhheeeecCHHHHHHHhhh
Confidence 4333333333333444444455555566689994 23333433 23 3433322322222223334467788887777
Q ss_pred HHHHHHHHH
Q 008094 421 GTLTGYSVV 429 (578)
Q Consensus 421 ~~l~~y~~~ 429 (578)
+.....++.
T Consensus 502 AV~~vM~iT 510 (852)
T PLN00151 502 AEVGVMMVS 510 (852)
T ss_pred hhhhhhhHH
Confidence 765544443
|
|
| >PRK09395 actP acetate permease; Provisional | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.35 Score=52.87 Aligned_cols=109 Identities=10% Similarity=-0.070 Sum_probs=57.3
Q ss_pred ccccChhHHHHHHhhhhhhhhHHHHHHHHHhhhCcHHHHHHHHHHHHH-HHHHHHHHHHhhcCCCCccchhhhhHHHhc-
Q 008094 58 LRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGPGVTISFLLAGAAS-VLNALCYAELASRFPAVVGGAYLYAYTAFN- 135 (578)
Q Consensus 58 ~r~l~~~~~~~~~i~~~ig~g~~~~~~~~~~~~G~~~~~~~ii~~l~~-~~~a~~~ael~~~~P~~~GG~y~~~~~~~g- 135 (578)
.|+++++...+-..++.+++.-|...+......|...++. .++..+. ....+.+++--++... =..++|.++-||
T Consensus 68 gr~l~~~~~~~si~At~~Sa~tfiG~~g~~y~~G~~~~~~-~~~~~~g~~~~~~~~~~~~r~~g~--~T~~d~l~~Rygs 144 (551)
T PRK09395 68 GGGITGFQNGLAIAGDYMSAASFLGISALVFTSGYDGLIY-SIGFLVGWPIILFLIAERLRNLGK--YTFADVASYRLKQ 144 (551)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHhhHHHHHhCHHHHHH-HHHHHHHHHHHHHHHHHHHhhCCC--ccHHHHHHHHcCC
Confidence 4789998876666666677655555443333345432222 2222222 2223333333332221 245666667777
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008094 136 ELTAFLVFAQLMLDYHIGAASIARSLASYVVSIL 169 (578)
Q Consensus 136 ~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~ 169 (578)
+....+.+....+...........+.+..+..+.
T Consensus 145 ~~~r~l~av~~iv~~~~yl~~q~~g~g~il~~~~ 178 (551)
T PRK09395 145 GPIRTLSACGSLVVVALYLIAQMVGAGKLIQLLF 178 (551)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5577777776666555555555555555555553
|
|
| >PF02705 K_trans: K+ potassium transporter; InterPro: IPR003855 This is a family of K+ potassium transporters that are conserved across phyla, having both bacterial (KUP) [], yeast (HAK) [], and plant (AtKT) [] sequences as members | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.19 Score=53.31 Aligned_cols=222 Identities=12% Similarity=0.077 Sum_probs=113.1
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhhccc--ccCCCCCCCC---------CChHHHHHHHHH
Q 008094 199 ILAPILLALLTIVLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEV--DVSNWSPFAP---------NGFKEILTGATV 267 (578)
Q Consensus 199 ~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~~~~~---------~g~~~~~~~~~~ 267 (578)
.+++++++.++.++-+|.+..++. +..+.++=.+.+...|+.+. +++-+..++| ++..++. .+..
T Consensus 134 ~it~~ILv~LF~iQ~~GT~~ig~~---FgPim~~WF~~l~~~G~~~I~~~p~Vl~A~nP~yai~f~~~~~~~~~~-~LG~ 209 (534)
T PF02705_consen 134 PITIAILVGLFAIQRFGTAKIGKL---FGPIMLLWFLTLGVLGLYNIIQHPEVLKALNPYYAIRFFIRNGWIGFF-VLGA 209 (534)
T ss_pred hHHHHHHHHHHHHHhhhhhHHHHH---HhHHHHHHHHHHHHHHHHHHhhCHHHHHHhCHHHHHHHHHHcCCchhh-hcch
Confidence 477788888888999998877775 45444444444444444321 1211111222 2332222 3345
Q ss_pred HHhhccchHHHhhhhhhhcCCCCChhHHHHHHHHHHHHHHHHHHHHHhccccccccCCCChHHHHHHHcChhHHHHHHHH
Q 008094 268 VFFAYVGFDAVANSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLDEDAPLSDAFASRGLKYVSVLISF 347 (578)
Q Consensus 268 ~~~~~~G~e~~~~~~~E~k~P~k~ip~a~~~s~~~~~i~y~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 347 (578)
.+.+.+|.|+.-. +-=+-.||.+.++-..-+.-+.++--+.+-+.....|++ .++|+... ...++.+-+.+
T Consensus 210 V~L~~TGaEALyA--DmGHfg~~~Ir~aw~~~V~PaL~LnY~GQgA~ll~~p~~---~~npFf~~----~P~~~~~p~~i 280 (534)
T PF02705_consen 210 VFLCVTGAEALYA--DMGHFGRKPIRIAWFFLVFPALLLNYFGQGALLLSHPEA---VSNPFFLL----IPEWLLWPMVI 280 (534)
T ss_pred HHHHHhhHHHHHh--hhccccchhhhhhHHHHHHHHHHHHHccHHHHHHcCcch---hhhHHHHH----hHHHHHHHHHH
Confidence 6778889997643 222233566655544423322222222222222222321 14455433 33455554444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCch-hhhhhcCC--CC--cchhHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Q 008094 348 GAVAGLTTTLLVGLYVQSRLYLGLGRDGLLPS-IFAKVHPK--RH--TPVHSQVWVGIVAGILAGLFNVRVLSHILSVGT 422 (578)
Q Consensus 348 ~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP~-~~~~~~~r--~~--~P~~ail~~~~i~~i~~~~~~~~~l~~~~~~~~ 422 (578)
.+.++..-+..+.+.++=-+..+.-+-|.+|+ ...|++++ .| .|..-.++......+...+-+.+.+.+...++.
T Consensus 281 lAtlAtIIASQA~Isg~FSl~~Qai~Lg~~Pr~~I~hTS~~~~GQIYIP~vNw~L~i~~i~vvl~F~~S~~la~AYGiAV 360 (534)
T PF02705_consen 281 LATLATIIASQAVISGAFSLTRQAIQLGYFPRLKIVHTSEKEEGQIYIPEVNWLLMIGVIAVVLGFRSSSNLAAAYGIAV 360 (534)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEECCcccCCcEechHHHHHHHHHHHhhheEECChHHHHHHHHHHH
Confidence 44444444444555555566667777899994 23344433 23 344433333333233334457788888888887
Q ss_pred HHHHHHHHHHH
Q 008094 423 LTGYSVVSACV 433 (578)
Q Consensus 423 l~~y~~~~~~~ 433 (578)
.....+..+..
T Consensus 361 t~tM~iTT~L~ 371 (534)
T PF02705_consen 361 TGTMLITTILL 371 (534)
T ss_pred HHHHHHHHHHH
Confidence 77666555443
|
; GO: 0015079 potassium ion transmembrane transporter activity, 0071805 potassium ion transmembrane transport, 0016020 membrane |
| >COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.24 Score=50.30 Aligned_cols=278 Identities=17% Similarity=0.130 Sum_probs=137.8
Q ss_pred HHHHHHhhhhhhhhHHHHHHHHHhhhCcH---HHHHHHHHHHHHHHHHHHHHHHhhcCCCCccchhhhhHHHhchhhHHH
Q 008094 65 ELVLIGVGASVGAGIFVVTGTVARDAGPG---VTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNELTAFL 141 (578)
Q Consensus 65 ~~~~~~i~~~ig~g~~~~~~~~~~~~G~~---~~~~~ii~~l~~~~~a~~~ael~~~~P~~~GG~y~~~~~~~g~~~g~~ 141 (578)
..-+|.++.-.|+|=...|+..=..+|.. +.++++++++..=.... ++ .-. +||.|.=..+-.||..|.+
T Consensus 9 ~~GfmLFalFFGAGNlIFPP~LG~~aG~~~~~A~lGFllTgVglPlLgi----Ia--~a~-~g~~~~~l~~~i~~~fg~~ 81 (431)
T COG1114 9 ALGFMLFALFFGAGNLIFPPMLGLHAGEHVWPAILGFLLTGVGLPLLGI----IA--VAL-YGGGVESLATRIGPWFGVL 81 (431)
T ss_pred HHHHHHHHHHhcCCCccCChhhhhhcCccHHHHHHHHHHHHhhHHHHHH----HH--hhc-cCCCHHHHhhhccchHHHH
Confidence 33344455556666666666655667763 66777777776322221 11 122 4443333344477777765
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCccccCCCccccccchhhhHHHHHHHHHHHHHHHhhhHHHHH
Q 008094 142 VFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGVGESSV 221 (578)
Q Consensus 142 ~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~ 221 (578)
..-...++--... +.....+...... ..|...++ +.....+..+++..+...+.+..-|...|
T Consensus 82 f~~~iyLsIGPff-AiPRt~~vsfe~~--i~p~~~~~--------------~~~~l~ifs~ifF~ia~~~sl~psklid~ 144 (431)
T COG1114 82 FAIAIYLSIGPFF-AIPRTGAVSFEVG--ISPLLGDS--------------SLPSLFIFSVIFFAIAYLFSLNPSKLIDR 144 (431)
T ss_pred HHHHHHHHhcccc-cCCcccchhHHHh--hhcccCCC--------------cchHHHHHHHHHHHHHHHHHcCHHHHHHH
Confidence 4433222210000 0001111110000 01211111 12233456667777777888889999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcccccCCCCC---CCC----CChH-HHHHHHHHHHhhccchHHHhhhhhhhcCCCCChh
Q 008094 222 LNSCMTVVKVIIVIVVIFAGAFEVDVSNWSP---FAP----NGFK-EILTGATVVFFAYVGFDAVANSAEESKKPQRDLP 293 (578)
Q Consensus 222 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~---~~~----~g~~-~~~~~~~~~~~~~~G~e~~~~~~~E~k~P~k~ip 293 (578)
+-++++-+.++.++++.+..+...+...-++ ..+ .|+. +....=..+..+|...-..+--..-.+++| +..
T Consensus 145 vGk~LTPilLv~l~il~i~~~~~p~g~~~~a~~~y~~~pf~~GfleGY~TMDaLAal~FgivIv~alk~~g~~~~~-~~~ 223 (431)
T COG1114 145 VGKFLTPILLVLLLILVIAAIIPPAGPISAASGAYQSQPFSKGFLEGYLTMDALAALAFGIVIVNALKSKGVTTKK-QII 223 (431)
T ss_pred HHHHHhHHHHHHHHHHHHHHHhCCCCCcccccHHHHhChHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhccCcHH-HHH
Confidence 9999999999998888887665533221110 111 1111 111111234445554444443344444443 444
Q ss_pred HHHHHHHHHHHHHHHHHHH--HHhccccccccC---C-CChHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008094 294 IGILGSLLICAALYVGVSL--VLTGMVPYKFLD---E-DAPLSDAFASRGLKYVSVLISFGAVAGLTTTLLVGLYVQSRL 367 (578)
Q Consensus 294 ~a~~~s~~~~~i~y~~~~~--~~~~~~~~~~~~---~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~ 367 (578)
|-.+.+-++..+.-.+... ...+....+... + ..-+.+..++..|+....++.+.+.++|+.+..+...+++..
T Consensus 224 ~~~~~aglIa~i~La~iY~~L~ylGa~s~~~~~~~~nG~~IL~~~s~~~fG~~G~~lL~~iv~lACLTTaiGLi~a~aef 303 (431)
T COG1114 224 KYTIKAGLIAAILLALIYLSLFYLGATSASAAGLAANGGQILSAYSQHLFGSYGSILLGLIVFLACLTTAVGLIVACAEF 303 (431)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccchHhhcccccchHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4443333333322222222 222222222111 1 122334555567777888888888999999988888777753
|
|
| >COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.37 Score=51.80 Aligned_cols=284 Identities=14% Similarity=0.060 Sum_probs=144.5
Q ss_pred ccccChhHHHHHHhhhh-hh-hhHHHHHHHHHhhhCcHHHHHHH---HHHHHHHHHHHHHHHHhhcCCCCccchhhhhHH
Q 008094 58 LRRLGLFELVLIGVGAS-VG-AGIFVVTGTVARDAGPGVTISFL---LAGAASVLNALCYAELASRFPAVVGGAYLYAYT 132 (578)
Q Consensus 58 ~r~l~~~~~~~~~i~~~-ig-~g~~~~~~~~~~~~G~~~~~~~i---i~~l~~~~~a~~~ael~~~~P~~~GG~y~~~~~ 132 (578)
.|+++++ +.+++.+.. .+ ...+..++.++..|-...++... ...+.....+--..+++ +.++ .=..++|.++
T Consensus 37 gR~lg~~-v~~ls~~as~~s~~t~lG~~g~ay~~G~~~~~~~~~~~~~~~~~~~~~~~rl~~~~-~~~~-~~T~~d~l~~ 113 (493)
T COG0591 37 GRSLGPF-VYALSAAASDTSGWTFLGLPGLAYASGLSGLWIAIGLLIGAFLLWLLFAPRLRRLA-KARG-ATTIPDFLEA 113 (493)
T ss_pred CCcCChH-HHHHHHHHHHHHHHHHhcchHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cccC-CccHHHHHHH
Confidence 5889998 666666643 44 34444555555543333333222 33333455555667777 5555 6789999999
Q ss_pred Hhc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCccccCCCccccccchhhhHHHHHHHHHHHHH
Q 008094 133 AFN-ELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIV 211 (578)
Q Consensus 133 ~~g-~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 211 (578)
-|| +....+.+....+......+....+.+..+...++ .+ .+ ....+.+.++++....-
T Consensus 114 Rf~s~~lr~l~ali~iv~~i~yia~ql~~~~~~~~~~~g-i~-------~~------------~~~~~~~~~v~~Yt~~g 173 (493)
T COG0591 114 RFGSKILRILSALIIIVFFIPYIALQLVAGGLLLSLLFG-IS-------YV------------TGILIGALIVALYTFLG 173 (493)
T ss_pred HcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC-CC-------HH------------HHHHHHHHHHHHHHHHc
Confidence 999 88888888888888888888888888777755443 11 10 01112233333333333
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHhh---hhcc-----cccCC---CCCCCC-CChHHHHH---HHHHHHhhccchH
Q 008094 212 LCWGVGESSVLNSCMTVVKVIIVIVVIFA---GAFE-----VDVSN---WSPFAP-NGFKEILT---GATVVFFAYVGFD 276 (578)
Q Consensus 212 ~~~g~~~~~~~~~~~~~~~~~~~~~~~i~---~~~~-----~~~~~---~~~~~~-~g~~~~~~---~~~~~~~~~~G~e 276 (578)
-.+++..+..+|..+..+.+..+.+.... +... ....+ .+++.. ........ ........+..-.
T Consensus 174 G~~av~~Td~iqg~im~i~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 253 (493)
T COG0591 174 GLRAVVWTDFIQGLIMLIALIVIPILVLILFGGFGELFAVLASLAPLFLTHPFDGALSPIYIISLIAWGTLFLGYFGQPH 253 (493)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHhcccccccCcccccchHHHHHHHHHHHHHHhhhhcCch
Confidence 45566667777766655544444333332 1110 00111 111111 11111111 1111233333444
Q ss_pred HHhhhhhhhcCCCCChhHHHHHHHHHHHHHHHHHHHHHh----cc--ccc----cccCCCChHHHHHHHcChhHHHHHHH
Q 008094 277 AVANSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLT----GM--VPY----KFLDEDAPLSDAFASRGLKYVSVLIS 346 (578)
Q Consensus 277 ~~~~~~~E~k~P~k~ip~a~~~s~~~~~i~y~~~~~~~~----~~--~~~----~~~~~~~p~~~~~~~~~~~~~~~~~~ 346 (578)
...+.-. .|++| +.||.+......-.+.+++..+++. .. .+. ...+.+..+........+++...++.
T Consensus 254 i~~r~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~~~~g~~~ 331 (493)
T COG0591 254 ILPRFMA-AKSIK-SLPKSARLAGILWPLYCLLGAFLLGLLGIAYFPLLPDLSVPLLNPELVFPYLILALFPPWIAGLLL 331 (493)
T ss_pred hhhhhhh-hccHh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCCHHHHHHHHHHHHChHHHHHHHH
Confidence 4444444 55543 4454443333333333333322211 11 111 11233445666777777888877777
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 008094 347 FGAVAGLTTTLLVGLYVQSR 366 (578)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~sR 366 (578)
.+++.+.+++..+.+...+-
T Consensus 332 ~ailaAvmSt~ss~ll~~ss 351 (493)
T COG0591 332 AAILAAVMSTASSQLLVASS 351 (493)
T ss_pred HHHHHHHHHHHHHHHHhhhH
Confidence 77777777776666655553
|
|
| >PF02028 BCCT: BCCT family transporter; InterPro: IPR000060 These prokaryotic transport proteins belong to a family known as BCCT (for Betaine / Carnitine / Choline Transporters) and are specific for compounds containing a quaternary nitrogen atom | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.34 Score=51.42 Aligned_cols=166 Identities=14% Similarity=0.044 Sum_probs=76.4
Q ss_pred hHHHHHHHHHHHhhccchHHHhhhhhhhcCCCCChhHHHHHHHHHHHHHHHHHHHHHhccccc-cccCCC---------C
Q 008094 258 FKEILTGATVVFFAYVGFDAVANSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPY-KFLDED---------A 327 (578)
Q Consensus 258 ~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~P~k~ip~a~~~s~~~~~i~y~~~~~~~~~~~~~-~~~~~~---------~ 327 (578)
|.+-...+.-+.|.--+--....+++=.| .|++..-+...++... +....-+.+.+...- .+.+.. +
T Consensus 300 w~~~WTvFYwaWWiawaPfvG~FiArISk--GRTIRE~il~~~~~ps-l~~~~wf~ifGg~al~~~~~g~~~~~~~~~~g 376 (485)
T PF02028_consen 300 WPQDWTVFYWAWWIAWAPFVGLFIARISK--GRTIREFILGVLLVPS-LFCFLWFSIFGGYALYLQLSGAGDLAAANEQG 376 (485)
T ss_dssp HHHHTHHHHHHHHHHTHHHHHHHHHHCTT--TSBHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHCTSS-HHHHHHH-
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHHhhhcC--CcCHHHHHHHHHHhhH-HHHHHHHHHHCchHHhhHhhhhhhHHHHhhcc
Confidence 54444344444444334444455555555 4788555544444433 333333333321111 111111 1
Q ss_pred ---hHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-CCchhhhhhcCCCCcchhHHHHHHHHHH
Q 008094 328 ---PLSDAFASRGLKYVSVLISFGAVAGLTTTLLVGLYVQSRLYLGLGRDG-LLPSIFAKVHPKRHTPVHSQVWVGIVAG 403 (578)
Q Consensus 328 ---p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~-~lP~~~~~~~~r~~~P~~ail~~~~i~~ 403 (578)
.+.+.+++. ++..++.+..++..+....+...+++..+-.++.+| .=|+...|+ .++ +..++++.
T Consensus 377 ~~~a~~~~l~~l---P~~~i~~~~~lil~~~f~vTs~DS~~~~la~~s~~~~~ep~~~~ri-------~W~-~~~~~~a~ 445 (485)
T PF02028_consen 377 PEAALFAFLEQL---PLSKILSILFLILIFIFFVTSADSATYVLAMLSSKGDEEPPRWLRI-------FWG-LIIGALAI 445 (485)
T ss_dssp HHHHHHHHHHTS---TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSSS-HHHHH-------HHH-HHHHHHHH
T ss_pred hhhHHHHHHHHh---hHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHcCCCCCCchHHHH-------HHH-HHHHHHHH
Confidence 222333333 223444555555666666777778888888888775 212111111 122 23333444
Q ss_pred HHHhhcCHHHHHHHH---HHHHHHHHHHHHHHHhhhe
Q 008094 404 ILAGLFNVRVLSHIL---SVGTLTGYSVVSACVIALR 437 (578)
Q Consensus 404 i~~~~~~~~~l~~~~---~~~~l~~y~~~~~~~~~~r 437 (578)
.+....+++.+-++. ++-..+...+.+.+.++.-
T Consensus 446 ~ll~~ggl~~lq~~~ii~~lP~~~v~~~~~~~~~k~l 482 (485)
T PF02028_consen 446 VLLLIGGLDALQSASIIGGLPFSFVMLLMCISFIKAL 482 (485)
T ss_dssp HHHHHHSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555544444 4444455556666655543
|
The BCCT proteins contain 12 transmembrane regions and are energized by proton symport. They contain a conserved region with four tryptophans in their central region [].; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2WSX_B 3HFX_A 2WSW_A 4DOJ_B 2WIT_C 4AIN_A 3P03_B. |
| >TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.42 Score=52.23 Aligned_cols=108 Identities=13% Similarity=0.034 Sum_probs=65.8
Q ss_pred ccccChhHHHHHHhhhhhhhhHHHHHHHHHhhhCcH---HHHHHHHHHHHHHHHHHHHHHHhhcCCCCccchhhhhHHHh
Q 008094 58 LRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGPG---VTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAF 134 (578)
Q Consensus 58 ~r~l~~~~~~~~~i~~~ig~g~~~~~~~~~~~~G~~---~~~~~ii~~l~~~~~a~~~ael~~~~P~~~GG~y~~~~~~~ 134 (578)
.|+++++....-..++.+++.-+..........|.. ..+++.++ ....++.+++.-++... -..++|.++-|
T Consensus 31 Gr~l~~~~~~~s~~At~~Sa~tflG~~g~~y~~G~~~~~~~~g~~~~---~~~~~~~~~p~~rr~~~--~T~~e~l~~Rf 105 (552)
T TIGR03648 31 GRGVPPVANGMATAADWMSAASFISMAGLIAFLGYDGLAYLMGWTGG---YVLLALLLAPYLRKFGK--YTVPDFIGDRY 105 (552)
T ss_pred CCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhChHHHHHHHHHHHH---HHHHHHHHHHHHHHCCC--ccHHHHHHHHh
Confidence 488999998776667777765555443333334542 22233232 23345666777777654 57899999888
Q ss_pred c-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008094 135 N-ELTAFLVFAQLMLDYHIGAASIARSLASYVVSILE 170 (578)
Q Consensus 135 g-~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~ 170 (578)
| +....+++....+......+......+..++.+.+
T Consensus 106 ~s~~~~~~~~i~~~~~~~~~l~~ql~~~~~~l~~~~g 142 (552)
T TIGR03648 106 YSNTARLVAVICAIFISFTYVAGQMRGVGVVFSRFLE 142 (552)
T ss_pred CCCceehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 8 44677777666665555555556666666665543
|
This family belongs to a larger family of transporters of the sodium:solute symporter superfamily, TC 2.A.21. Members of this strictly bacterial protein subfamily are found almost invariably immediately downstream from a member of family TIGR03647. Occasionally, the two genes are fused. |
| >KOG2466 consensus Uridine permease/thiamine transporter/allantoin transport [Nucleotide transport and metabolism; Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.17 Score=52.04 Aligned_cols=308 Identities=14% Similarity=0.111 Sum_probs=142.0
Q ss_pred CCcccccChhHHHHHHhhhhhhhhHHHHHHHHHhhhCc--HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccchhhhh--
Q 008094 55 EGLLRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGP--GVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYA-- 130 (578)
Q Consensus 55 ~~l~r~l~~~~~~~~~i~~~ig~g~~~~~~~~~~~~G~--~~~~~~ii~~l~~~~~a~~~ael~~~~P~~~GG~y~~~-- 130 (578)
++-+|..++++-..+=.+..+..+-+...+..++.|-. ..++..+++-++.......- .+ .|..|+-.
T Consensus 50 ~~~~Rtws~~~~~~fW~~~~fnv~Tw~ia~s~l~lGLswwq~~~tv~vG~~~~~~f~~ln-------s~-~G~~yhIsFp 121 (572)
T KOG2466|consen 50 PPSRRTWSWWNYIAFWLADSFNVNTWMIAGSALELGLSWWQTWITVWVGYLFTAIFLVLN-------SR-PGSDYHISFP 121 (572)
T ss_pred CcccccccHHHHHHHHHhccccccceeehhhHHhccCCHHHHHHHHHHHHHHHHHHHHHc-------cC-CCccccccee
Confidence 44568899999988888877777777777777766543 47777666666544333222 22 45555433
Q ss_pred --HH-HhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cccccCCCCccccCCCccccccchhhhHHHHHHHH
Q 008094 131 --YT-AFNELTAFLVFAQLMLDYHIGAASIARSLASYVVSILEL-FPFFKENIPSWIGHGGEEFLGGTLSINILAPILLA 206 (578)
Q Consensus 131 --~~-~~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (578)
+| .||-..+-.--..-.+--++.-+..+...++.++.++.. ++. ..+.|+++... +.....++...+..
T Consensus 122 v~sR~sFGiygS~~pIi~R~vma~vwYg~~awiGgecV~lmL~si~~~-~~hipntl~~~------~~tt~e~i~FfIFw 194 (572)
T KOG2466|consen 122 VLSRSSFGIYGSLWPIINRVVMACVWYGVNAWIGGECVQLMLKSIFKS-FSHIPNTLGKP------GTTTYEFIGFFIFW 194 (572)
T ss_pred eeeeeehhhhHhHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHhhh-hhcCccccCCC------CCchHHHHHHHHHH
Confidence 22 244332222222222222333344555556665555532 233 34556665432 22223334444444
Q ss_pred HHH-HHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhhccccc--C-CCCCCCCCChHHHHHHHHHHHhhccchHHHhhhh
Q 008094 207 LLT-IVLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEVDV--S-NWSPFAPNGFKEILTGATVVFFAYVGFDAVANSA 282 (578)
Q Consensus 207 ~~~-~i~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~-~~~~~~~~g~~~~~~~~~~~~~~~~G~e~~~~~~ 282 (578)
++. .+..++.....++...-.++.....+.+.+...-+.+. + ..++-.+.|..-...-+-....++.++.....-.
T Consensus 195 v~s~~~~~~~p~~ir~lf~~ka~~t~fA~~g~LIw~l~kAhG~G~l~~~~st~~gs~~aWa~~~~i~~~~~~fstl~~N~ 274 (572)
T KOG2466|consen 195 VASLPFYWFPPYKIRHLFTWKAVLTPFAAFGFLIWLLKKAHGLGHLFDSKSTVSGSAHAWAFVRSIMSCIANFSTLIVNA 274 (572)
T ss_pred HHhhheeeccHHHhhhHHHHHHhhhHHHHHHHHHHHHHhcCCccccccCCCcccccchhHHHHHHHHHHHhccchhhccC
Confidence 433 33446666666665555555544445555544433221 1 1111222222111112223455556655554444
Q ss_pred hhhcCCCCChhHHHHHHHHHHHHHHHHHHHHHhccccc--ccc-CC--CChHHHHHHH-------cChhHHHHHHHHHHH
Q 008094 283 EESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPY--KFL-DE--DAPLSDAFAS-------RGLKYVSVLISFGAV 350 (578)
Q Consensus 283 ~E~k~P~k~ip~a~~~s~~~~~i~y~~~~~~~~~~~~~--~~~-~~--~~p~~~~~~~-------~~~~~~~~~~~~~~~ 350 (578)
.|..+=.|+ |.+.+.+.+++..+...+.-.+...+.. +.+ +. -+|+ |++.+ .|......++.+...
T Consensus 275 pDFsRF~ks-p~a~~~~Ql~alp~~~~l~~liGVlv~sa~~~iYG~~~W~Pl-dil~~~l~~~y~~G~RAgvFfi~~~f~ 352 (572)
T KOG2466|consen 275 PDFSRFAKS-PNAIWWGQLIALPLPFGLTPLIGVLVTSASKIIYGTNYWSPL-DILNQWLDTNYSAGARAGVFFIGFGFA 352 (572)
T ss_pred chhHhhcCC-CCccchhhhhhhhhhhhhhhheeeEehhhhhhhhcccccCHH-HHHHHHhccccccccchhhhHHHHHHH
Confidence 443222221 3333344443332221111111111111 111 11 1232 33333 256677778887777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCchhhhh
Q 008094 351 AGLTTTLLVGLYVQSRLYLGLGRDGLLPSIFAK 383 (578)
Q Consensus 351 ~~~~~~~~~~~~~~sR~l~~~a~d~~lP~~~~~ 383 (578)
++.+++..+.-..+ -++.-.+.+||++.-
T Consensus 353 laql~~NISan~va----agnDl~~L~PkyinI 381 (572)
T KOG2466|consen 353 LAQLGTNISANSVA----AGNDLSALLPKYINI 381 (572)
T ss_pred HHHHhcchhccccc----cchhhHhhCcceEEe
Confidence 77777665432211 233334577876654
|
|
| >PLN00150 potassium ion transporter family protein; Provisional | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.11 Score=57.12 Aligned_cols=219 Identities=13% Similarity=0.122 Sum_probs=104.2
Q ss_pred hHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhhc---ccccCCCCCCCC---------CChHHHHHHH
Q 008094 198 NILAPILLALLTIVLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAF---EVDVSNWSPFAP---------NGFKEILTGA 265 (578)
Q Consensus 198 ~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~---~~~~~~~~~~~~---------~g~~~~~~~~ 265 (578)
..+++++++.++.+.-+|....++. +.-+.++=++.+...|+. ..+++-+..++| ++..+| ..+
T Consensus 215 v~is~~ILv~LF~iQ~~GT~kVg~~---FgPIm~~Wf~~i~~iGiyni~~~~p~Vl~AlnP~y~~~ff~~~~~~g~-~~L 290 (779)
T PLN00150 215 TIISCVILVILFSLQRFGTHKVSFL---FAPIFLCWFFSLALIGCYNIIKWDKSVFLAFNPLYIVSFFIRNGRQGW-ESL 290 (779)
T ss_pred hhhHHHHHHHHHHHHhccchhhhhh---hccHHHHHHHHHHHHHHHHHHhcCHHHHhhcCHHHHHHHHHhCCCceE-EEe
Confidence 3577888888888898998777764 444444444444444443 333333333333 222111 123
Q ss_pred HHHHhhccchHHHhhhhhhhcCCCCChhHHHHHHHHHHHHHHHHHHHHHhccccccccCCCChHHHHHHHcChhHHHHHH
Q 008094 266 TVVFFAYVGFDAVANSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLDEDAPLSDAFASRGLKYVSVLI 345 (578)
Q Consensus 266 ~~~~~~~~G~e~~~~~~~E~k~P~k~ip~a~~~s~~~~~i~y~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 345 (578)
-.++.+.+|.|+.- ++-=.-.+|.+-.|-..-+.=+.++--+..-+....-|.+ .++|+.. ...+++.+-+
T Consensus 291 G~V~L~iTGaEALy--ADlGHFg~~~Iriaw~~~V~P~LlL~Y~GQaA~ll~~p~~---~~npFf~----~iP~~~~~P~ 361 (779)
T PLN00150 291 GGIVLCMTGTEAMF--ADLGHFTVKSMQIAFTSLVYPCLLLTYLGQAAYLVKHMED---VNDPFYR----SLPKPIYWPI 361 (779)
T ss_pred cceeeeecchhhhh--ccccCCCccceeeeehhhHHHHHHHHHcchHHHHhcCccc---ccCcHHH----hCCchhHHHH
Confidence 34567888999653 2222333566655543333322222112222222222211 2345433 3344444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCch-hhhhhcC--CCC--cchhHHHHHHHHHHHHHhhcCHHHHHHHHHH
Q 008094 346 SFGAVAGLTTTLLVGLYVQSRLYLGLGRDGLLPS-IFAKVHP--KRH--TPVHSQVWVGIVAGILAGLFNVRVLSHILSV 420 (578)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP~-~~~~~~~--r~~--~P~~ail~~~~i~~i~~~~~~~~~l~~~~~~ 420 (578)
.+.+.++..-+..+.+.++=-++.+.-+-|.+|+ ..-|+++ +.| .|..-.+++.....+...+-+.+.+.+...+
T Consensus 362 ~vlAtlAtIIASQA~ISg~FSi~~Qai~Lg~fPrvkI~hTS~~~~GQIYIP~vNw~Lmv~~i~vv~~F~~s~~l~~AYGi 441 (779)
T PLN00150 362 FVLATCSAMIASQAMISATFSIVKQAMALGCFPRVKIVHTSNKVHGQVYIPEINWILMVLCLVITAGFRDTDEIGNAYGI 441 (779)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceEEecCcccCCceeeHHHHHHHHHHHHhheEEecChHHHHHHhhh
Confidence 4444444443334444444455556666789994 2333332 233 3433222222222222233467778887777
Q ss_pred HHHHHHHHH
Q 008094 421 GTLTGYSVV 429 (578)
Q Consensus 421 ~~l~~y~~~ 429 (578)
+.....++.
T Consensus 442 AV~~vM~iT 450 (779)
T PLN00150 442 AVVGVMIIT 450 (779)
T ss_pred heehhhHHH
Confidence 765544433
|
|
| >PLN00149 potassium transporter; Provisional | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.37 Score=53.22 Aligned_cols=221 Identities=11% Similarity=0.041 Sum_probs=105.9
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhhc---ccccCCCCCCCCC---------ChHHHHHHHH
Q 008094 199 ILAPILLALLTIVLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAF---EVDVSNWSPFAPN---------GFKEILTGAT 266 (578)
Q Consensus 199 ~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~---~~~~~~~~~~~~~---------g~~~~~~~~~ 266 (578)
.+++++++.++.+.-+|....++. +.-+.++=++.+...|+. +.+++-+..++|. +..+| ..+-
T Consensus 200 ~is~~ILv~LF~~Q~~GT~kvg~~---FgPIml~Wf~~i~~iGiyni~~~~p~Vl~AlnP~y~~~f~~~~~~~g~-~~LG 275 (779)
T PLN00149 200 PVACIILIGLFALQHYGTHRVGFL---FAPVVLTWLLCISAIGVYNIFHWNPHVYQALSPYYMYKFLKKTQRGGW-MSLG 275 (779)
T ss_pred HHHHHHHHHHHHHhccccHHHhhh---hhhHHHHHHHHHHHHHHHHHHhcCHhHhhhcCHHHHHHHHHHCCCcee-Eeec
Confidence 477888888888888998777764 444444444444444443 3344444444342 22121 1233
Q ss_pred HHHhhccchHHHhhhhhhhcCCCCChhHHHHHHHHHHHHHHHHHHHHHhccccccccCCCChHHHHHHHcChhHHHHHHH
Q 008094 267 VVFFAYVGFDAVANSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLDEDAPLSDAFASRGLKYVSVLIS 346 (578)
Q Consensus 267 ~~~~~~~G~e~~~~~~~E~k~P~k~ip~a~~~s~~~~~i~y~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 346 (578)
-++.+.+|.|+.- ++-=.-.+|.+..|-..-+.=+.++--+..-+....-|...-+-.+|+.. ...+++.+-+.
T Consensus 276 gV~L~iTG~EALy--ADlGHF~~~~Ir~aw~~~V~P~L~L~Y~GQaA~l~~~p~~~~~~~~pFy~----~iP~~~~~P~~ 349 (779)
T PLN00149 276 GILLCITGSEAMF--ADLGHFSQLSIKIAFTSLVYPSLILAYMGQAAYLSKHHVIESDYRIGFYV----SVPEKLRWPVL 349 (779)
T ss_pred chhhcccchhhhh--hcccCCCccceeeeehhhHHHHHHHHhhhHHHHHhcCcchhccccCcHHH----hCCchhHHHHH
Confidence 4567888999653 22223345666555433333233222222222222223211112335433 33344444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCch-hhhhhcC--CCC--cchhHHHHHHHHHHHHHhhcCHHHHHHHHHHH
Q 008094 347 FGAVAGLTTTLLVGLYVQSRLYLGLGRDGLLPS-IFAKVHP--KRH--TPVHSQVWVGIVAGILAGLFNVRVLSHILSVG 421 (578)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP~-~~~~~~~--r~~--~P~~ail~~~~i~~i~~~~~~~~~l~~~~~~~ 421 (578)
+.+.++..-+..+.+.++=-++.+.-+-|.+|+ ..-|+++ +.| .|..-.+++.....+...+-+.+.+.+...++
T Consensus 350 vlAtlAaIIASQA~ISg~FSii~Qa~~Lg~fPrvkIvhTS~~~~GQIYIP~vNw~Lmv~~i~vv~~F~~s~~l~~AYGiA 429 (779)
T PLN00149 350 VIAILAAVVGSQAIITGTFSIIKQCSALGCFPKVKIVHTSSKIHGQIYIPEINWTLMLLCLAVTVGFRDTKRLGNASGLA 429 (779)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceEEecCcccCCceeeHHHHHHHHHHHHhheeEecChHHHHHHhhhh
Confidence 444444443334444444455556666789994 2333332 233 34333222222222233334677788877777
Q ss_pred HHHHHHHH
Q 008094 422 TLTGYSVV 429 (578)
Q Consensus 422 ~l~~y~~~ 429 (578)
.....++.
T Consensus 430 V~~vM~iT 437 (779)
T PLN00149 430 VITVMLVT 437 (779)
T ss_pred hehHHHHH
Confidence 65544433
|
|
| >PRK10745 trkD potassium transport protein Kup; Provisional | Back alignment and domain information |
|---|
Probab=96.57 E-value=1.2 Score=48.20 Aligned_cols=221 Identities=14% Similarity=0.082 Sum_probs=105.0
Q ss_pred hHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhhccc--ccCCCCCCCC---------CChHHHHHHHH
Q 008094 198 NILAPILLALLTIVLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEV--DVSNWSPFAP---------NGFKEILTGAT 266 (578)
Q Consensus 198 ~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~~~~~---------~g~~~~~~~~~ 266 (578)
..+++++++.++.++-+|....++. ++-+.++=.+.+.+.|+.+. +++-+..++| ++..++ ..+.
T Consensus 144 vpit~~ILv~LF~iQ~~GT~~vG~~---FgPIm~vWF~~i~~~Gi~~I~~~P~Vl~AlnP~ya~~f~~~~~~~gf-~~LG 219 (622)
T PRK10745 144 VPLSIIVLTLLFMIQKHGTGMVGKL---FAPIMLTWFLTLAVLGLRSIIANPEVLHALNPMWAVHFFLEYKTVSF-FALG 219 (622)
T ss_pred HHHHHHHHHHHHHHhccccHHHhhh---hhhHHHHHHHHHHHHHHHHHhcCHHHHhHhCHHHHHHHHHhCCCceE-EEec
Confidence 3477788888888888888777764 55554444444444444322 2222222222 122111 1223
Q ss_pred HHHhhccchHHHhhhhhhhcCCCCChhHHHHHHHHHHHHHHHHHHHHHhccccccccCCCChHHHHHHHcChhHHHHHHH
Q 008094 267 VVFFAYVGFDAVANSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLDEDAPLSDAFASRGLKYVSVLIS 346 (578)
Q Consensus 267 ~~~~~~~G~e~~~~~~~E~k~P~k~ip~a~~~s~~~~~i~y~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 346 (578)
.++.+.+|-|+.- ++-=+-.||.+.+|-..-+.=+.++--+.+-+....-|.. .++|+... ...++.+-+.
T Consensus 220 ~V~L~vTGaEALY--ADmGHFG~~~Ir~aW~~~v~P~L~LnY~GQgA~ll~~p~~---~~NpFf~~----~P~~~~~p~v 290 (622)
T PRK10745 220 AVVLAITGVEALY--ADMGHFGKFPIRLAWFTVVLPSLVLNYFGQGALLLKNPEA---IKNPFFLL----APDWALIPLL 290 (622)
T ss_pred ceeeeccchHHHh--hccCCCCccceeeeehhhHHHHHHHHhcchHHHHhcCchh---hcCcHHHh----CChhHHHHHH
Confidence 4567888999652 2222334566655543333222222112222222222211 24555443 3345544444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCch-hhhhhcC--CCCcchhHHHHHHHHH--HHHHhhcCHHHHHHHHHHH
Q 008094 347 FGAVAGLTTTLLVGLYVQSRLYLGLGRDGLLPS-IFAKVHP--KRHTPVHSQVWVGIVA--GILAGLFNVRVLSHILSVG 421 (578)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP~-~~~~~~~--r~~~P~~ail~~~~i~--~i~~~~~~~~~l~~~~~~~ 421 (578)
+.+.++..-+..+.+.++=-+..+.-+-|.+|+ ...+.++ +.|.-+..+=+...+. .+...+-+.+.+.+...++
T Consensus 291 iLATlAtIIASQAvISGaFSl~~QAi~Lg~~Prl~I~hTS~~~~GQIYIP~vNw~Lmv~~i~~vl~F~sS~~La~AYGiA 370 (622)
T PRK10745 291 ILATLATVIASQAVISGVFSLTRQAVRLGYLPPMRIIHTSEMESGQIYIPFVNWLLYVAVVIVIVSFEHSSNLAAAYGIA 370 (622)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHhCCCCCceEEeCCCccCCceeeHHHHHHHHHHHHeeEEEecCchHHHHHhhhh
Confidence 444444444444444444455556667789994 2333332 3344333332222222 2222334667788777777
Q ss_pred HHHHHHHHHH
Q 008094 422 TLTGYSVVSA 431 (578)
Q Consensus 422 ~l~~y~~~~~ 431 (578)
......+..+
T Consensus 371 Vt~tM~iTT~ 380 (622)
T PRK10745 371 VTGTMVLTSI 380 (622)
T ss_pred heeHhHHHHH
Confidence 6555444443
|
|
| >TIGR00794 kup potassium uptake protein | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.24 Score=54.17 Aligned_cols=221 Identities=10% Similarity=0.069 Sum_probs=108.1
Q ss_pred hHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhhcc---cccCCCCCCCC---------CChHHHHHHH
Q 008094 198 NILAPILLALLTIVLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAFE---VDVSNWSPFAP---------NGFKEILTGA 265 (578)
Q Consensus 198 ~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~---~~~~~~~~~~~---------~g~~~~~~~~ 265 (578)
..+++++++.++.+.-+|....++. ++.+.++=.+.+.+.|+.+ .+++-+..++| ++..++ ..+
T Consensus 169 v~it~~ILv~LF~iQ~~GT~kvg~~---FgPim~vWF~~l~~~Gi~~I~~~~P~Vl~AlnP~ya~~f~~~~~~~~~-~~L 244 (688)
T TIGR00794 169 VPISCIILVLLFLIQRFGTAKVGFT---FAPIILVWLLLLAGIGIYNIVKFNPEVLKALSPYYAVQFFIEYGTVGW-VSL 244 (688)
T ss_pred hhHHHHHHHHHHHHhccccHHHhhh---hhhHHHHHHHHHHHHHHHHHHhcCHHHHhHhCHHHHHHHHHHCCCcee-eec
Confidence 3577788888888888998777764 5555444444444444432 23333333333 222222 133
Q ss_pred HHHHhhccchHHHhhhhhhhcCCCCChhHHHHHHHHHHHHHHHHHHHHHhccccccccCCCChHHHHHHHcChhHHHHHH
Q 008094 266 TVVFFAYVGFDAVANSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLDEDAPLSDAFASRGLKYVSVLI 345 (578)
Q Consensus 266 ~~~~~~~~G~e~~~~~~~E~k~P~k~ip~a~~~s~~~~~i~y~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 345 (578)
..++.+.+|-|+.-. +-=.-.||.+-.|-..-+.-+.++--+..-+....-|.. ..+|+... ..+++.+-+
T Consensus 245 G~V~L~iTGaEALyA--DmGHFg~~~Ir~aw~~~V~P~L~LnY~GQgA~ll~~p~~---~~NpFf~~----~P~~~~~p~ 315 (688)
T TIGR00794 245 GGVVLSITGVEAMFA--DLGHFGKLPIQLAWFTFVYPSLILCYIGQAAYLSKHPEA---IKNPFFLS----IPDWALWPL 315 (688)
T ss_pred cchhheeccHhhhhc--ccCCCCcccceeehHHHHHHHHHHHHcchHHHHhcCcch---hcCcHHHh----CchHHHHHH
Confidence 346778889997632 222233455655543233222222222222222222221 14455433 344555544
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCch-hhhhhcC--CCCcchhHH--HHHHHHHHHHHhhcCHHHHHHHHHH
Q 008094 346 SFGAVAGLTTTLLVGLYVQSRLYLGLGRDGLLPS-IFAKVHP--KRHTPVHSQ--VWVGIVAGILAGLFNVRVLSHILSV 420 (578)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP~-~~~~~~~--r~~~P~~ai--l~~~~i~~i~~~~~~~~~l~~~~~~ 420 (578)
.+.+.++..-+..+.+.++=-+..+.-+-|.+|+ ..-++++ +.|.-+..+ +++.....+...+-+.+.+.+...+
T Consensus 316 ~vlAtlAtIIASQA~IsG~FSl~~Qai~Lg~~Pr~~I~hTS~~~~GQIYiP~vNw~Lmv~~i~vvl~F~~S~~la~AYGi 395 (688)
T TIGR00794 316 FIIATLAAIIASQAVISGVFSITSQAVRLGCFPRVKIIHTSEKYHGQIYIPFVNWLLMLGVIAVTAGFRDTNNLGAAYGI 395 (688)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceEEecCCccCCceeeHHHHHHHHHHHHheeEEecChHHHHHHhhh
Confidence 4444444444444444445555666667789994 2333332 334333332 2222222223334467788888877
Q ss_pred HHHHHHHHHHH
Q 008094 421 GTLTGYSVVSA 431 (578)
Q Consensus 421 ~~l~~y~~~~~ 431 (578)
+.....++..+
T Consensus 396 aVt~tM~iTT~ 406 (688)
T TIGR00794 396 AVTGTFLVTTC 406 (688)
T ss_pred hhhhhhHHHHH
Confidence 76655554444
|
Proteins of the KUP family include the KUP (TrkD) protein of E. coli, a partially sequenced ORF from Lactococcus lactis, high affinity K+ uptake systems (Hak1) of the yeast Debaryomyces occidentalis as well as the fungus, Neurospora crassa, and several homologues in plants. While the E. coli KUP protein is assumed to be a secondary transporter, and uptake is blocked by protonophores such as CCCP (but not arsenate), the energy coupling mechanism has not been defined. However, the N. crassa protein has been shown to be a K+:H+ symporter, establishing that the KUP family consists of secondary carriers. The plant high affinity (20mM) K+ transporter can complement K+ uptake defects in E. coli. |
| >PLN00148 potassium transporter; Provisional | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.21 Score=55.03 Aligned_cols=218 Identities=9% Similarity=0.061 Sum_probs=104.8
Q ss_pred hHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhh---cccccCCCCCCCC---------CChHHHHHHH
Q 008094 198 NILAPILLALLTIVLCWGVGESSVLNSCMTVVKVIIVIVVIFAGA---FEVDVSNWSPFAP---------NGFKEILTGA 265 (578)
Q Consensus 198 ~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~---~~~~~~~~~~~~~---------~g~~~~~~~~ 265 (578)
..+++++++.++.+.-+|....+++ +.-+.++=++.+...|+ .+.+++-+..++| ++..+| ..+
T Consensus 198 v~is~~ILv~LF~vQ~~GT~kVg~~---FgPIm~lWf~~i~~iGiyni~~~~p~Vl~AlnP~y~~~ff~~~~~~g~-~~L 273 (785)
T PLN00148 198 VLLACVILVGLFALQHCGTHRVAFM---FAPIVIIWLLSIGSIGLYNIIHWNPKIIHALSPYYIIKFFRVTGKDGW-ISL 273 (785)
T ss_pred hhHHHHHHHHHHHHhccccHHHHhh---hhhHHHHHHHHHHHHHHHHHHhcCHHHhhhcCHHHHHHHHHhCCCceE-Eee
Confidence 3477788888888888998777764 44444444444444443 3334444443433 222121 123
Q ss_pred HHHHhhccchHHHhhhhhhhcCCCCChhHHHHHHHHHHHHHHHHHHHHHhccccccccCCCChHHHHHHHcChhHHHHHH
Q 008094 266 TVVFFAYVGFDAVANSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLDEDAPLSDAFASRGLKYVSVLI 345 (578)
Q Consensus 266 ~~~~~~~~G~e~~~~~~~E~k~P~k~ip~a~~~s~~~~~i~y~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 345 (578)
-.++.+.+|.|+.-. +-=.-.+|.+.+|-..-+.=+.++--+..-+....-|.+ .++|+.. ...+++.+-+
T Consensus 274 GgV~L~iTGaEALyA--DlGHFg~~~Iriaw~~~V~P~L~L~Y~GQaA~ll~~p~~---~~npFf~----~iP~~~~~P~ 344 (785)
T PLN00148 274 GGILLSITGTEAMFA--DLGHFTAASIRLAFATVIYPCLVVQYMGQAAFLSKNIPS---IPNSFYD----SIPDPVFWPV 344 (785)
T ss_pred cchheeccchhhhhh--hccCCCccceEEeeeehHHHHHHHHHcchHHHHhcCccc---ccCcHHH----hCCchhHHHH
Confidence 345678889997532 222333566655543332222222112222222222321 2345433 2334444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCch-hhhhhcCC--CC--cchhHHHHHHHHHHHHHhhcCHHHHHHHHHH
Q 008094 346 SFGAVAGLTTTLLVGLYVQSRLYLGLGRDGLLPS-IFAKVHPK--RH--TPVHSQVWVGIVAGILAGLFNVRVLSHILSV 420 (578)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP~-~~~~~~~r--~~--~P~~ail~~~~i~~i~~~~~~~~~l~~~~~~ 420 (578)
.+.+.++..-+..+.+.++=-++.+.-+-|.+|+ ..-|++++ .| .|..-.+++.....+...+-+.+.+.+...+
T Consensus 345 ~vlAtlAtIIASQA~ISg~FSi~~Qai~Lg~fPrvkIvhTS~~~~GQIYIP~vNw~Lmv~~i~vv~~F~~s~~la~AYGi 424 (785)
T PLN00148 345 FVIATLAAIVGSQAVITATFSIVKQCHALGCFPRVKVVHTSKHIYGQIYIPEINWILMILTLAVTIGFRDTTLIGNAYGL 424 (785)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceEEecCCccCCceeeHHHHHHHHHHHHHhheeeccchhHHHhhhh
Confidence 4444444333334444444455555666789994 33344433 23 3443323333332333334466777777777
Q ss_pred HHHHHHHH
Q 008094 421 GTLTGYSV 428 (578)
Q Consensus 421 ~~l~~y~~ 428 (578)
+.....++
T Consensus 425 AV~~vM~i 432 (785)
T PLN00148 425 ACMTVMFI 432 (785)
T ss_pred heeeHHHH
Confidence 66544433
|
|
| >PRK09928 choline transport protein BetT; Provisional | Back alignment and domain information |
|---|
Probab=93.87 E-value=13 Score=41.18 Aligned_cols=90 Identities=8% Similarity=-0.156 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhhhhcCCCCcchhHHHHHHHHHHHHHhhcCHHHHHHHHHH--
Q 008094 343 VLISFGAVAGLTTTLLVGLYVQSRLYLGLGRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGILAGLFNVRVLSHILSV-- 420 (578)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP~~~~~~~~r~~~P~~ail~~~~i~~i~~~~~~~~~l~~~~~~-- 420 (578)
.++.+..++.++....++.-+.+-.+-.++-.|.-|+- -.|+.+.=.+++ +.++++..+.....++.+-.+..+
T Consensus 409 ~i~~~l~~il~~iFfvTSaDS~s~Vla~lts~g~~~~~---~pp~~~RifW~v-~ig~la~~LL~~GGL~aLQt~sii~a 484 (679)
T PRK09928 409 TFSASVATITGLLFYVTSADSGALVLGNFTSKLKDINS---DAPNWLRVFWSV-AIGLLTLGMLMTNGISALQNTTVIMG 484 (679)
T ss_pred HHHHHHHHHHHHHHHHhcchHHHHHHHHHHcCCCCCCC---CCCcceeeHHHH-HHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 33444444444555566667777777777765543311 112333334443 334444444444556554444433
Q ss_pred -HHHHHHHHHHHHHhhh
Q 008094 421 -GTLTGYSVVSACVIAL 436 (578)
Q Consensus 421 -~~l~~y~~~~~~~~~~ 436 (578)
-+.+..++.+.+.++.
T Consensus 485 lPf~~I~ll~~~sl~k~ 501 (679)
T PRK09928 485 LPFSFVIFFVMAGLYKS 501 (679)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 3444455555555543
|
|
| >PRK09950 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=93.82 E-value=11 Score=40.34 Aligned_cols=102 Identities=6% Similarity=-0.091 Sum_probs=48.5
Q ss_pred HHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhhhhcCCCCcchhHHHHHHHHHHHHHhh
Q 008094 329 LSDAFASRGLKYVSVLISFGAVAGLTTTLLVGLYVQSRLYLGLGRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGILAGL 408 (578)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP~~~~~~~~r~~~P~~ail~~~~i~~i~~~~ 408 (578)
+.+.+++.. ...++....++.++....+..-+++..+-.++.+|.-++ +-.+|...=.+++ ..++++..+...
T Consensus 391 ~~~~l~~lP---~~~i~~~l~~vl~~if~vTs~DS~s~vla~~ts~g~~~~---~~P~~~~ri~W~i-~~g~ia~~Ll~~ 463 (506)
T PRK09950 391 VQQLLSSLP---AGKLFLAAYLGIMIIFLASHMDAVAYTMAATSTRNLREG---DDPDRGLRLFWCV-VITLIPLSILFT 463 (506)
T ss_pred HHHHHHhCc---HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHcCCCCCC---CCCCcchhHHHHH-HHHHHHHHHHHh
Confidence 334444442 334445555555566666777778888887776554221 1011222223333 333333334344
Q ss_pred cC-HHHHHHHHHH---HHHHHHHHHHHHHhhhe
Q 008094 409 FN-VRVLSHILSV---GTLTGYSVVSACVIALR 437 (578)
Q Consensus 409 ~~-~~~l~~~~~~---~~l~~y~~~~~~~~~~r 437 (578)
.. ++.+-++..+ -..+...+.+.+.++.-
T Consensus 464 gG~l~~lQ~~~ii~alP~~~i~~l~~~s~~k~l 496 (506)
T PRK09950 464 GASLDTMKTTVVLTALPFLVILLIKVYGFIRWL 496 (506)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44 6554444443 33444455555555443
|
|
| >TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter | Back alignment and domain information |
|---|
Probab=92.68 E-value=2.2 Score=46.20 Aligned_cols=60 Identities=13% Similarity=0.284 Sum_probs=32.2
Q ss_pred cCCCCCCCccccccc----hHHHHHHHHHHHHhhcC----------CHHHHH-----HHHHHHHHHHHHHhhhcccccC
Q 008094 502 HGYSDPPGFSCPGVP----LLPAVSIFFNLFLFAQL----------HYEAWW-----RFVILSFISIGLYAFYGQYHAD 561 (578)
Q Consensus 502 ~~~~~~~~~~~p~~p----~~~~~~~~~~~~~~~~~----------~~~~~~-----~~~~~~~~g~~~y~~~~~~~~~ 561 (578)
|+.+.+|+||+|+.| +...++++.+++.+... +...+. ...++.+++.++|..+++|+++
T Consensus 388 k~p~~~rpf~~pg~~~~~~i~~~~~~~~~~~~~v~~~~Pp~~~~~~~~~~y~~~~~~~~~~~~~~~~~~y~~~~~~~~~ 466 (507)
T TIGR00910 388 KHPDLKRTFNIPGGIGGKLIIAGIGFLLSIFAFFISFLPPANIAGDETDMYQEILLISFLVTAALPFIIYALHDKKGHA 466 (507)
T ss_pred hcCCCCCCeEecCCccchhhHHHHHHHHHHHHHheeeeCCCccCCCchHHHHHHHHHHHHHHHHHHHHHHHHhcccccC
Confidence 333347889999765 45566666665543311 111111 1133456777777766655443
|
Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009 |
| >KOG3660 consensus Sodium-neurotransmitter symporter [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=91.20 E-value=27 Score=38.50 Aligned_cols=47 Identities=19% Similarity=0.215 Sum_probs=32.0
Q ss_pred ChhHHHHHHhhhhhhhhHHHH-HHHHHhhhCcHHHHHHHHHHHH-HHHH
Q 008094 62 GLFELVLIGVGASVGAGIFVV-TGTVARDAGPGVTISFLLAGAA-SVLN 108 (578)
Q Consensus 62 ~~~~~~~~~i~~~ig~g~~~~-~~~~~~~~G~~~~~~~ii~~l~-~~~~ 108 (578)
+..+...-.+|..+|-|=... |...+++||.+.++.+++..++ .++.
T Consensus 39 ~~~efllS~ig~~vGlgNvwRFP~~~y~nGGgaFLIpY~i~l~l~GlP~ 87 (629)
T KOG3660|consen 39 SKIEFLLSCLGYAVGLGNVWRFPYLAYKNGGGAFLIPYLIVLFLFGLPL 87 (629)
T ss_pred hHHHHHHHHHHHHhhhhHHHHHHHHHHhcCCchHHHHHHHHHHHhcchH
Confidence 566777778888888777764 5556777887766666665554 4443
|
|
| >TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter | Back alignment and domain information |
|---|
Probab=91.06 E-value=5.9 Score=42.42 Aligned_cols=58 Identities=9% Similarity=0.117 Sum_probs=30.5
Q ss_pred cCCCCCCCccccccch----HHHHHHHHHHHHhhcC-----------CHH-HHHHHHHHHHHHHHHHhhhcccc
Q 008094 502 HGYSDPPGFSCPGVPL----LPAVSIFFNLFLFAQL-----------HYE-AWWRFVILSFISIGLYAFYGQYH 559 (578)
Q Consensus 502 ~~~~~~~~~~~p~~p~----~~~~~~~~~~~~~~~~-----------~~~-~~~~~~~~~~~g~~~y~~~~~~~ 559 (578)
|+.+.+|+||+|..|+ +..++++.+++.+... +.+ +....++.+++..+.|+.+++||
T Consensus 385 ~~~~~~rpf~~p~g~~g~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~ny~~~~~~~~~~~~~~~~~~~~~~~ 458 (474)
T TIGR03813 385 SQPDRPRPYRIPGGLAGMWFIGGLGFVGSALAFVLSFIPPSQIGTGSPTRYVGLLIGLAALFVTAPFLIYARRK 458 (474)
T ss_pred cCCCCCCCeEecCCccchhHHHHHHHHHHHHHHheeEeCCcccCCCchHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3334578899987544 4555555555443311 111 23344455556666666666554
|
Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain. |
| >PF00209 SNF: Sodium:neurotransmitter symporter family; InterPro: IPR000175 Neurotransmitter transport systems are integral to the release, re-uptake and recycling of neurotransmitters at synapses | Back alignment and domain information |
|---|
Probab=90.10 E-value=32 Score=37.41 Aligned_cols=101 Identities=15% Similarity=0.202 Sum_probs=54.9
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhhcccc---------cCCCCCCCCCChHHHHHHHHHHHhhcc-chHHHhh
Q 008094 211 VLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEVD---------VSNWSPFAPNGFKEILTGATVVFFAYV-GFDAVAN 280 (578)
Q Consensus 211 i~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---------~~~~~~~~~~g~~~~~~~~~~~~~~~~-G~e~~~~ 280 (578)
...+|+|..+|+......+..+.++++.+-++...+ ..+|+.+.+ ..-+..+...++|+.. |+-....
T Consensus 194 ~i~kGi~~~~kv~~~~~~~p~v~l~il~ir~ltl~ga~~Gl~~~~~pd~~~l~~--~~vW~~A~~Q~ffsl~ig~G~~it 271 (523)
T PF00209_consen 194 GIWKGIESIGKVMYPTLLLPFVLLIILLIRSLTLPGASEGLKFLFTPDWSKLLD--PKVWIAALGQVFFSLSIGFGIMIT 271 (523)
T ss_dssp TTTTTHHHHHHHHHHHHH---HHHHHHHHHHHT-EEHHHHHHHHHSB-TTGTTS--HHHHHHHHHHHHHHTTTTSSHHHH
T ss_pred heEeccccccchhhhhhhhhhEEEEEEEEEEEcCCCCCCceEEEecCCcchhhH--HHHHHHHHHHHhhccCCCcceEEE
Confidence 345789998888776655444444444433221110 122333222 2345667778888874 7777777
Q ss_pred hhhhhcCCCCChhHHHHHHHHHHHHHHHHHHHHH
Q 008094 281 SAEESKKPQRDLPIGILGSLLICAALYVGVSLVL 314 (578)
Q Consensus 281 ~~~E~k~P~k~ip~a~~~s~~~~~i~y~~~~~~~ 314 (578)
++.-.|+ ++|++|...........+.++..+++
T Consensus 272 ~~Sy~~~-~~n~~~~a~~v~~~~~~~sllag~~i 304 (523)
T PF00209_consen 272 YGSYNKF-KNNIFRDALIVAFINTLVSLLAGLVI 304 (523)
T ss_dssp HHTTS-T-TS-SHHHHHHHHHHHHHHHHTTGTHH
T ss_pred EcCcCCC-CccccccceEEEcCchhhhHhHHHHH
Confidence 7877776 57888876666655555554444333
|
High affinity transport proteins found in the plasma membrane of presynaptic nerve terminals and glial cells are responsible for the removal from the extracellular space of released-transmitters, thereby terminating their actions []. Plasma membrane neurotransmitter transporters fall into two structurally and mechanistically distinct families. The majority of the transporters constitute an extensive family of homologous proteins that derive energy from the co-transport of Na+ and Cl-, in order to transport neurotransmitter molecules into the cell against their concentration gradient. The family has a common structure of 12 presumed transmembrane helices and includes carriers for gamma-aminobutyric acid (GABA), noradrenaline/adrenaline, dopamine, serotonin, proline, glycine, choline, betaine and taurine. They are structurally distinct from the second more-restricted family of plasma membrane transporters, which are responsible for excitatory amino acid transport. The latter couple glutamate and aspartate uptake to the cotransport of Na+ and the counter-transport of K+, with no apparent dependence on Cl- []. In addition, both of these transporter families are distinct from the vesicular neurotransmitter transporters [, ]. Sequence analysis of the Na+/Cl- neurotransmitter superfamily reveals that it can be divided into four subfamilies, these being transporters for monoamines, the amino acids proline and glycine, GABA, and a group of orphan transporters [].; GO: 0005328 neurotransmitter:sodium symporter activity, 0006836 neurotransmitter transport, 0016021 integral to membrane; PDB: 2QEI_A 3F3C_A 3USP_A 3USK_A 3TU0_A 3GWW_A 3TT3_A 3F4J_A 3USJ_B 3GJC_B .... |
| >COG4025 Predicted membrane protein [Function unknown] | Back alignment and domain information |
|---|
Probab=89.87 E-value=3.1 Score=38.61 Aligned_cols=16 Identities=13% Similarity=0.092 Sum_probs=13.1
Q ss_pred HHHHHHHHHhhcCCCc
Q 008094 363 VQSRLYLGLGRDGLLP 378 (578)
Q Consensus 363 ~~sR~l~~~a~d~~lP 378 (578)
..-|-...+.||+.+|
T Consensus 55 ~~ve~v~e~~re~~i~ 70 (284)
T COG4025 55 SKVEKVMEKVREFQIP 70 (284)
T ss_pred HHHHHHHHHHhcCCCc
Confidence 4567888999999887
|
|
| >COG3158 Kup K+ transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=88.98 E-value=36 Score=36.46 Aligned_cols=43 Identities=19% Similarity=0.322 Sum_probs=28.6
Q ss_pred hHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 008094 198 NILAPILLALLTIVLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAF 243 (578)
Q Consensus 198 ~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 243 (578)
..++.++++..+.+.-.|....++ ++.-+.++-.+.+...|+.
T Consensus 149 vpitl~IL~~LF~iQ~~GT~~Vg~---~FGPVm~lWF~~l~~~Gl~ 191 (627)
T COG3158 149 VPITLIILVLLFLIQRFGTGRVGK---LFGPVMLLWFLALAVLGLI 191 (627)
T ss_pred HHHHHHHHHHHHHHhcccchhhhh---hhccHHHHHHHHHHHHHHH
Confidence 357777788888888888877776 4555555555555555554
|
|
| >TIGR00842 bcct choline/carnitine/betaine transport | Back alignment and domain information |
|---|
Probab=86.04 E-value=50 Score=34.94 Aligned_cols=90 Identities=14% Similarity=0.022 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhhhhcCCCCcchhHHHHHHHHHHHHHhhcC-HHHHHHHHHH
Q 008094 342 SVLISFGAVAGLTTTLLVGLYVQSRLYLGLGRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGILAGLFN-VRVLSHILSV 420 (578)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP~~~~~~~~r~~~P~~ail~~~~i~~i~~~~~~-~~~l~~~~~~ 420 (578)
..++....++..+....+..-+++..+-.++.++.-++- + .||...=.+++.+ ++++..+..... ++.+-.+..+
T Consensus 355 ~~i~~~l~~il~~if~vTs~DS~s~vla~~~s~~g~~~~--e-p~~~~ri~W~v~i-g~~a~~ll~~gG~l~~lQ~~~ii 430 (453)
T TIGR00842 355 GTITSALALIVIIIFFITSADSGALVLANTSSRGGQLGE--E-PPKWVRVFWAVAI-GLIALVLLFSGGSLAALQTTAII 430 (453)
T ss_pred HHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcCCCCCC--C-CCcccchHHHHHH-HHHHHHHHHhcCcHHHHHHHHHH
Confidence 334444445555556666677777777777543322110 0 1122223344333 333344444444 6554444444
Q ss_pred H---HHHHHHHHHHHHhh
Q 008094 421 G---TLTGYSVVSACVIA 435 (578)
Q Consensus 421 ~---~l~~y~~~~~~~~~ 435 (578)
+ ..+..++.+.+.++
T Consensus 431 ~alP~~~i~~l~~~sl~k 448 (453)
T TIGR00842 431 AALPFSLVMLVVMASLIK 448 (453)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 3 34444455555443
|
properties inherent to their polypeptide chains. |
| >COG4145 PanF Na+/panthothenate symporter [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=85.54 E-value=45 Score=33.90 Aligned_cols=208 Identities=13% Similarity=0.118 Sum_probs=106.8
Q ss_pred hchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCccccCCCccccccchhhhHHHHHHHHHHHHHHH
Q 008094 134 FNELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLC 213 (578)
Q Consensus 134 ~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 213 (578)
-++..-+.++....+.+...+...-.+.+..+....+. +. .....+.+..+ ...-..
T Consensus 117 ~s~fl~~las~~Lifff~~~m~~qfiGgarLlE~~~gi-dY-------------------~tgL~ifa~~V---~iYt~f 173 (473)
T COG4145 117 QSRFLVWLASLSLIFFFVGAMTVQFIGGARLLETALGI-DY-------------------TTGLLIFAVSV---AIYTAF 173 (473)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHCC-Cc-------------------hhhHHHHHHHH---HHHHhh
Confidence 46777888888888888777777777777777766542 10 00111111111 112222
Q ss_pred hhhH---HHHHHHHHHHHHHHHHHHHHHhh---hhc-------ccccCCCCCCCCCC---hHHHHHHHHHHHhhccchHH
Q 008094 214 WGVG---ESSVLNSCMTVVKVIIVIVVIFA---GAF-------EVDVSNWSPFAPNG---FKEILTGATVVFFAYVGFDA 277 (578)
Q Consensus 214 ~g~~---~~~~~~~~~~~~~~~~~~~~~i~---~~~-------~~~~~~~~~~~~~g---~~~~~~~~~~~~~~~~G~e~ 277 (578)
-|.| .+..+|-.......+.+++..+- |+. ..|++-..|...+. ..-+.+-....++.-.|--.
T Consensus 174 GGFRAvvltD~IQG~vmligtv~Lf~~~i~~~GG~~~av~tl~~iDp~lv~P~~~~~~l~~~Fm~Sfwilv~~gvlglP~ 253 (473)
T COG4145 174 GGFRAVVLTDTIQGLVMLIGTVVLFVGVIYAGGGLSNAVETLTTIDPGLVTPQGADDILDPPFMASFWILVCFGVLGLPH 253 (473)
T ss_pred cceeeeehHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHhCCccccCCCCCcccccchHHHHHHHHHHHHHhcCcH
Confidence 3444 34445554444443333333321 111 11222222211111 11112222334455555544
Q ss_pred HhhhhhhhcCCCCChhHHHHHHHHHHHHHHHHHHHHHhc--cccccccCCCChHHHHHHHcChhHHHHHHHHHHHHHHHH
Q 008094 278 VANSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTG--MVPYKFLDEDAPLSDAFASRGLKYVSVLISFGAVAGLTT 355 (578)
Q Consensus 278 ~~~~~~E~k~P~k~ip~a~~~s~~~~~i~y~~~~~~~~~--~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (578)
.+.-.-..|| +|.+.++|+.+..++.++.+.+-.+-.. .+-+|.-..|.-+...+-+...|....++..+.+.+.++
T Consensus 254 t~vr~ia~kD-skaih~gmiigt~vi~il~~gmhl~G~~graViPdlt~~D~Vip~lalkvlpp~~agifl~apmaAiMS 332 (473)
T COG4145 254 TAVRCIAFKD-SKAIHRGMIIGTIVIAILMLGMHLAGALGRAVIPDLTVVDLVIPTLALKVLPPFAAGIFLAAPMAAIMS 332 (473)
T ss_pred HHHHHHhccc-hhHHhcCcchHHHHHHHHHHHHHHhhhhhhhhcCCCCccchhHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 4444555677 4789999999988888876665543221 121221123334555666666777666776777777788
Q ss_pred HHHHHHHHHH
Q 008094 356 TLLVGLYVQS 365 (578)
Q Consensus 356 ~~~~~~~~~s 365 (578)
+.++.+.-.|
T Consensus 333 TIds~L~~~s 342 (473)
T COG4145 333 TINSQLLQSS 342 (473)
T ss_pred HHHHHHHHHH
Confidence 7777655444
|
|
| >PRK15238 inner membrane transporter YjeM; Provisional | Back alignment and domain information |
|---|
Probab=83.27 E-value=42 Score=36.17 Aligned_cols=13 Identities=15% Similarity=0.353 Sum_probs=8.7
Q ss_pred hcCCCCcchhHHH
Q 008094 384 VHPKRHTPVHSQV 396 (578)
Q Consensus 384 ~~~r~~~P~~ail 396 (578)
.|||++.|.....
T Consensus 238 ~~p~~~~p~ai~~ 250 (496)
T PRK15238 238 ENPEKNFPKGIII 250 (496)
T ss_pred cCCCccccHHHHH
Confidence 3677788876543
|
|
| >KOG4303 consensus Vesicular inhibitory amino acid transporter [Amino acid transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=83.26 E-value=15 Score=36.56 Aligned_cols=238 Identities=13% Similarity=0.120 Sum_probs=116.6
Q ss_pred CcccccChhHHHHHHhhhhhhhhHHHH-HHHHHhhhCcHHHHHHHHHHHHHHHHHHHH-HHHhhcCCCCccc------hh
Q 008094 56 GLLRRLGLFELVLIGVGASVGAGIFVV-TGTVARDAGPGVTISFLLAGAASVLNALCY-AELASRFPAVVGG------AY 127 (578)
Q Consensus 56 ~l~r~l~~~~~~~~~i~~~ig~g~~~~-~~~~~~~~G~~~~~~~ii~~l~~~~~a~~~-ael~~~~P~~~GG------~y 127 (578)
+-+.+++-+++..-....+- |.|.. .+.+...+|-..+.+++..+.++-.+.-.+ .=+-..-|+ |- .|
T Consensus 112 e~~~kI~a~qAaWNVTNAIQ--GMFivgLP~AvlhGGyw~i~amvg~A~vCcyTGk~Li~CLYE~~~d--GevVrvRdsY 187 (524)
T KOG4303|consen 112 EASEKISALQAAWNVTNAIQ--GMFIVGLPIAVLHGGYWSIGAMVGVAYVCCYTGKLLIECLYENGED--GEVVRVRDSY 187 (524)
T ss_pred CCCCccHHHHHhhhhhhhhh--eeeEeccceeeeEcchhHHHHHHhhhhhhhccchhhhhhhccCCCC--CcEEEeehhH
Confidence 33467888887654444442 33332 333444577666666555544432222211 112122222 21 24
Q ss_pred hhhHHH-hchhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCccccCCCccccccchhhhHHHHHHH
Q 008094 128 LYAYTA-FNELTA-FLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILL 205 (578)
Q Consensus 128 ~~~~~~-~g~~~g-~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (578)
.-+.+. ++|..| -.+.-+..+....++..+....++.+.+- +|....+...|. ++.-+.+
T Consensus 188 vaIA~~C~~P~lGgr~V~~AQliELlmTCIlYvVv~gdLl~~~---fP~~svd~~sWm---------------~i~~a~L 249 (524)
T KOG4303|consen 188 VAIADFCYKPGLGGRWVLAAQLIELLMTCILYVVVAGDLLQSC---FPGLSVDKASWM---------------MITSASL 249 (524)
T ss_pred HHHHHHhcCCCcchheeeHHHHHHHHHHHHhhhheechhhhcc---CCCCCccccchh---------------hhhhHHH
Confidence 444444 566555 44444555555566666666666665543 343222333443 1222222
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCCCCCC-CCCChHHHHHHHHHHHhhccchHHHhhhhhh
Q 008094 206 ALLTIVLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEVDVSNWSPF-APNGFKEILTGATVVFFAYVGFDAVANSAEE 284 (578)
Q Consensus 206 ~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~G~e~~~~~~~E 284 (578)
+-..+ +...|...++..+.+...+++-++++.-.+.....=.|... .+-....+-..+-.+.|+|+.---..++-+.
T Consensus 250 Lpc~F--Lk~Lk~VS~lSf~ct~sH~viN~i~v~YCLs~~~dW~wskv~Fsidi~~fPisvG~iVFsYTSqIFLP~LEGN 327 (524)
T KOG4303|consen 250 LPCSF--LKDLKIVSRLSFFCTISHLVINLIMVLYCLSFVSDWSWSKVTFSIDINTFPISVGMIVFSYTSQIFLPNLEGN 327 (524)
T ss_pred hhhHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccceeEEEEEEcccCceEEEEEEEeeeceeeccccccc
Confidence 22222 34556777777777777777666655544433221112100 0000001111223356777776667788889
Q ss_pred hcCCCCChhHHHHHHHHHHHHHHHHHHHHHhccc
Q 008094 285 SKKPQRDLPIGILGSLLICAALYVGVSLVLTGMV 318 (578)
Q Consensus 285 ~k~P~k~ip~a~~~s~~~~~i~y~~~~~~~~~~~ 318 (578)
+|||.+ +---+-++-+...++=.+.........
T Consensus 328 M~~ps~-Fn~Ml~WsHIAAaVfK~~Fg~~~fLTf 360 (524)
T KOG4303|consen 328 MKNPSQ-FNVMLKWSHIAAAVFKVVFGMLGFLTF 360 (524)
T ss_pred cCChhH-heeeeehHHHHHHHHHHHHHHheeeee
Confidence 999964 445566777777766555544444333
|
|
| >PRK03356 L-carnitine/gamma-butyrobetaine antiporter; Provisional | Back alignment and domain information |
|---|
Probab=81.35 E-value=83 Score=33.84 Aligned_cols=102 Identities=13% Similarity=0.001 Sum_probs=48.8
Q ss_pred HHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhhhhcCCCCcchhHHHHHHHHHHHHHhh
Q 008094 329 LSDAFASRGLKYVSVLISFGAVAGLTTTLLVGLYVQSRLYLGLGRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGILAGL 408 (578)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP~~~~~~~~r~~~P~~ail~~~~i~~i~~~~ 408 (578)
+.+.+++.. +..++.+..++.++....+...+++..+-.++.+|.-++- -.||...=.+++ ..++++..+...
T Consensus 394 lf~~l~~lP---l~~i~~~l~~il~~if~vTsaDS~t~vla~~ts~g~~~~~---~p~~~~ri~W~v-~ig~ia~~Ll~~ 466 (504)
T PRK03356 394 IIETWAALP---LSTATMWGFFILCFIATVTLINACSYTLAMSTCREVRDGE---EPPLLVRIGWSI-LVGIIGIVLLAL 466 (504)
T ss_pred HHHHHHHCc---HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHcCCCCCCC---CCCcchhhHHHH-HHHHHHHHHHHh
Confidence 344444442 3334444445555556667777788888888776532211 111222233343 333333434344
Q ss_pred cCHHHHHHHH---HHHHHHHHHHHHHHHhhhe
Q 008094 409 FNVRVLSHIL---SVGTLTGYSVVSACVIALR 437 (578)
Q Consensus 409 ~~~~~l~~~~---~~~~l~~y~~~~~~~~~~r 437 (578)
..++.+-.+. ++-..+...+.+.+.++.-
T Consensus 467 GGl~~lQt~sii~alPf~~i~~l~~~sl~k~l 498 (504)
T PRK03356 467 GGLKPIQTAIIAGGCPLFFVNIMVTLSFIKDA 498 (504)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555444444 3334444455555555443
|
|
| >TIGR01197 nramp NRAMP (natural resistance-associated macrophage protein) metal ion transporters | Back alignment and domain information |
|---|
Probab=81.19 E-value=73 Score=33.10 Aligned_cols=43 Identities=14% Similarity=0.155 Sum_probs=31.1
Q ss_pred HHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008094 329 LSDAFASRGLKYVSVLISFGAVAGLTTTLLVGLYVQSRLYLGL 371 (578)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~ 371 (578)
..+.++...++....++.++.+.+-.++..+..++..-.....
T Consensus 282 ~~~~L~p~~G~~a~~lF~igLlaAG~sS~it~~~ag~~v~~gf 324 (390)
T TIGR01197 282 IGVLLGCLFSPAAGYIFAVGLLAAGQSSGMVGTYSGQFVMEGF 324 (390)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 4455666777888888988888888888888777655544443
|
This model describes the Nramp metal ion transporter family. Historically, in mammals these proteins have been functionally characterized as proteins involved in the host pathogen resistance, hence the name - NRAMP. At least two isoforms Nramp1 and Nramp2 have been identified. However the exact mechanism of pathogen resistance was unclear, until it was demonstrated by expression cloning and electrophysiological techniques that this protein was a metal ion transporter. It was also independently demonstrated that a microcytic anemia (mk) locus in mouse, encodes a metal ion transporter (DCT1 or Nramp2). The transporter has a broad range of substrate specificity that include Fe+2, Zn+2, Mn+2, Co+2, Cd+2, Cu+2, Ni+2 and Pb+2. The uptake of these metal ions is coupled to proton symport. Metal ions are essential cofactors in a number of biological process including, oxidative phosphorylation, gene |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 578 | ||||
| 3gi8_C | 444 | Crystal Structure Of Apct K158a Transporter Bound T | 2e-07 | ||
| 3gi9_C | 444 | Crystal Structure Of Apct Transporter Bound To 7f11 | 2e-07 | ||
| 3ncy_A | 445 | X-Ray Crystal Structure Of An Arginine Agmatine Ant | 1e-06 | ||
| 3ob6_A | 445 | Structure Of Adic(N101a) In The Open-To-Out Arg+ Bo | 3e-06 | ||
| 3l1l_A | 445 | Structure Of Arg-Bound Escherichia Coli Adic Length | 3e-06 | ||
| 3lrb_A | 445 | Structure Of E. Coli Adic Length = 445 | 3e-06 |
| >pdb|3GI8|C Chain C, Crystal Structure Of Apct K158a Transporter Bound To 7f11 Monoclonal Fab Fragment Length = 444 | Back alignment and structure |
|
| >pdb|3GI9|C Chain C, Crystal Structure Of Apct Transporter Bound To 7f11 Monoclonal Fab Fragment Length = 444 | Back alignment and structure |
|
| >pdb|3NCY|A Chain A, X-Ray Crystal Structure Of An Arginine Agmatine Antiporter (Adic) In Complex With A Fab Fragment Length = 445 | Back alignment and structure |
|
| >pdb|3OB6|A Chain A, Structure Of Adic(N101a) In The Open-To-Out Arg+ Bound Conformation Length = 445 | Back alignment and structure |
|
| >pdb|3L1L|A Chain A, Structure Of Arg-Bound Escherichia Coli Adic Length = 445 | Back alignment and structure |
|
| >pdb|3LRB|A Chain A, Structure Of E. Coli Adic Length = 445 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C Length = 444 | Back alignment and structure |
|---|
Score = 372 bits (957), Expect = e-124
Identities = 92/444 (20%), Positives = 179/444 (40%), Gaps = 36/444 (8%)
Query: 55 EGLLRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGPGVTISFLLAGAASVLNALCYAE 114
E ++L L+E V + VG +GA IF + G A+ AG + +F+L+G ++L A Y +
Sbjct: 2 ELKNKKLSLWEAVSMAVGVMIGASIFSIFGVGAKIAGRNLPETFILSGIYALLVAYSYTK 61
Query: 115 LASRFPAVVGGAYLYAYTAFNE-LTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFP 173
L ++ G + + A + + + L + Y I A A+ A Y + ++
Sbjct: 62 LGAKIV-SNAGPIAFIHKAIGDNIITGALSILLWMSYVISIALFAKGFAGYFLPLINAP- 119
Query: 174 FFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGVGESSVLNSCMTVVKVII 233
T +I I ++A T + +G + +VK++I
Sbjct: 120 ------------------INTFNIAITEIGIVAFFTALNFFGSKAVGRAEFFIVLVKLLI 161
Query: 234 VIVVIFAGAFEVDVSNWSP-FAPNGFKEILTGATVVFFAYVGFDAVANSAEESKKPQRDL 292
+ + IFAG + S P AP+ ++ + + F +Y+GF + N++E + P++++
Sbjct: 162 LGLFIFAGLITIHPSYVIPDLAPSAVSGMIFASAIFFLSYMGFGVITNASEHIENPKKNV 221
Query: 293 PIGILGSLLICAALYVGVSLVLTGMVPYKFLD--EDAPLSDAFASRGLKYVSVLISFGAV 350
P I S+LI +YVGV++ G +P L + L+ A +LIS GA+
Sbjct: 222 PRAIFISILIVMFVYVGVAISAIGNLPIDELIKASENALAVAAKPFLGNLGFLLISIGAL 281
Query: 351 AGLTTTLLVGLYVQSRLYLGLGRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGILAGLFN 410
+++ + +Y + + L +DG LP F + + + A LFN
Sbjct: 282 FSISSAMNATIYGGANVAYSLAKDGELPEFFERKVWF--KSTEGLYITSALGVLFALLFN 339
Query: 411 VRVLSHILSVGTLTGYSVVSACVIALRWKDRTSRNDSSRLTSAWRQGVICLIIIACCGFG 470
+ ++ I S + Y V L + + I ++ +
Sbjct: 340 MEGVASITSAVFMVIYLFVILSHYILIDEVGGRKEIV-------IFSFIVVLGVFLLLL- 391
Query: 471 AGLFYRINASYILLIVAVVIAVLA 494
+ I ++ + +
Sbjct: 392 --YYQWITNRFVFYGIIATFIGVL 413
|
| >3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C Length = 444 | Back alignment and structure |
|---|
Score = 51.5 bits (124), Expect = 5e-07
Identities = 13/113 (11%), Positives = 38/113 (33%), Gaps = 14/113 (12%)
Query: 454 WRQGVICLIIIACCGFGAGLFYRI-------NASYILLIVAVVIAVLASAMLCLRHGYSD 506
W + L I + G L + + +A ++++ + V+++ L
Sbjct: 317 WFKSTEGLYITSALGVLFALLFNMEGVASITSAVFMVIYLFVILSHYI-----LIDEV-- 369
Query: 507 PPGFSCPGVPLLPAVSIFFNLFLFAQLHYEAWWRFVILSFISIGLYAFYGQYH 559
+ + +F L + + + +I +FI + ++ +
Sbjct: 370 GGRKEIVIFSFIVVLGVFLLLLYYQWITNRFVFYGIIATFIGVLIFEIIYRKV 422
|
| >3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A Length = 445 | Back alignment and structure |
|---|
Score = 263 bits (673), Expect = 4e-82
Identities = 88/449 (19%), Positives = 168/449 (37%), Gaps = 45/449 (10%)
Query: 55 EGLLRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGPGVTISFLLAGAASVLNALCYAE 114
+ ++GL + L+ GA +G+G+F++ +A G + +L+ ++ ++ YA+
Sbjct: 4 DADAHKVGLIPVTLMVSGAIMGSGVFLLPANLASTGGIAI-YGWLVTIIGALGLSMVYAK 62
Query: 115 LASRFPAVVGGAYLYAYTAFNELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPF 174
++ P GG+Y YA F + L IG ++ Y+ FP
Sbjct: 63 MSFLDP-SPGGSYAYARRCFGPFLGYQTNVLYWLACWIGNIAMVVIGVGYLSY---FFPI 118
Query: 175 FKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGVGESSVLNSCMTVVKVIIV 234
+ I ++L + ++ G + + + TV+ +I +
Sbjct: 119 L----------------KDPWVLTITCVVVLWIFVLLNIVGPKMITRVQAVATVLALIPI 162
Query: 235 IVVIFAGAFEVDVSNWSPFAP----NGFKEILTGATVVFFAYVGFDAVANSAEESKKPQR 290
+ + G F + F I + V ++++G ++ + +A K P+R
Sbjct: 163 VGIAVFGWFWFRGETYMAAWNVSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVVKNPKR 222
Query: 291 DLPIGILGSLLICAALYVGVSLVLTGMVPYKFLDE-DAPLSDAFASRGLKYVSVLISFGA 349
++PI +G +LI A YV + + GM+P L +P DA ++SF A
Sbjct: 223 NVPIATIGGVLIAAVCYVLSTTAIMGMIPNAALRVSASPFGDAARMALGDTAGAIVSFCA 282
Query: 350 VAGLTTTLLVGLYVQSRLYLGLGRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGILA--- 406
AG +L + + DGL P IFA+V+ K TPV + VGI+ I
Sbjct: 283 AAGCLGSLGGWTLLAGQTAKAAADDGLFPPIFARVN-KAGTPVAGLIIVGILMTIFQLSS 341
Query: 407 ----GLFNVRVLSHILSVGTLTGYSVVSACVIALRWKDRTSRNDSSRLTSAWRQGVICLI 462
++S + + TL Y A ++ L + I
Sbjct: 342 ISPNATKEFGLVSSVSVIFTLVPYLYTCAALLLLGHGHFGKAR--------PAYLAVTTI 393
Query: 463 IIACCGFGAGLFYRINASYILLIVAVVIA 491
C + A ++ ++
Sbjct: 394 AFLYCIW---AVVGSGAKEVMWSFVTLMV 419
|
| >4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A Length = 511 | Back alignment and structure |
|---|
Score = 235 bits (601), Expect = 9e-71
Identities = 68/410 (16%), Positives = 136/410 (33%), Gaps = 43/410 (10%)
Query: 57 LLRRLGLFELVLIGVGASVGAGIFVVTGTVA-RDAGPGVTISFLLAGAASVL-NALCYAE 114
++ +L L+G A + + V +G + LL G + LC AE
Sbjct: 4 SVQTGKAKQLTLLGFFAITASMVMAVYEYPTFATSGFSLVFFLLLGGILWFIPVGLCAAE 63
Query: 115 LASRFPAVVGGAYLYAYTAFNELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPF 174
+A+ GG + + F + L IG + + + IL+
Sbjct: 64 MATVDGWEEGGVFAWVSNTLGPRWGFAAISFGYLQIAIGFIPMLYFVLGALSYILKWPAL 123
Query: 175 FKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGVGESSVLNSCMTVVKVIIV 234
++ I A I+L L + G ++ + +++
Sbjct: 124 N----------------EDPITKTIAALIILWALALTQFGGTKYTARIAKVGFFAGILLP 167
Query: 235 IVVIFAGAF---------EVDVSNWSPFAPNGFKEILTGATVVFFAYVGFDAVANSAEES 285
++ A A +++ + + F L +Y+G +A A E
Sbjct: 168 AFILIALAAIYLHSGAPVAIEMDSKTFFPDFSKVGTLVVFVAFILSYMGVEASATHVNEM 227
Query: 286 KKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLDEDAPLSDAFAS------RGLK 339
P RD P+ +L ++ L L + ++P ++ A + F ++
Sbjct: 228 SNPGRDYPLAMLLLMVAAICLSSVGGLSIAMVIPGNEINLSAGVMQTFTVLMSHVAPEIE 287
Query: 340 YVSVLISFGAVAGLTTTLLVGLYVQSRLYLGLGRDGLLPSIFAKVHPKRHTPVHSQVWVG 399
+ +IS + G+ + + SR + LLP+ FAK++ K PV +
Sbjct: 288 WTVRVISALLLLGVLAEIASWIVGPSRGMYVTAQKNLLPAAFAKMN-KNGVPVTLVISQL 346
Query: 400 IVAGILAGLFNV---------RVLSHILSVGTLTGYSVVSACVIALRWKD 440
++ I + + + V L Y ++ I L K
Sbjct: 347 VITSIALIILTNTGGGNNMSFLIALALTVVIYLCAYFMLFIGYIVLVLKH 396
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 578 | |||
| 3l1l_A | 445 | Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC | 100.0 | |
| 3gia_A | 444 | Uncharacterized protein MJ0609; membrane protein, | 100.0 | |
| 4djk_A | 511 | Probable glutamate/gamma-aminobutyrate antiporter; | 100.0 | |
| 2jln_A | 501 | MHP1; hydantoin, transporter, membrane protein, nu | 99.1 | |
| 2xq2_A | 593 | Sodium/glucose cotransporter; transport protein, i | 98.45 | |
| 3dh4_A | 530 | Sodium/glucose cotransporter; membrane protein, sy | 98.3 | |
| 2a65_A | 519 | Leutaa, Na(+):neurotransmitter symporter (SNF fami | 97.33 | |
| 4ain_A | 539 | Glycine betaine transporter BETP; membrane protein | 85.58 |
| >3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.7e-52 Score=437.76 Aligned_cols=420 Identities=21% Similarity=0.332 Sum_probs=356.0
Q ss_pred CCcccccChhHHHHHHhhhhhhhhHHHHHHHHHhhhCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccchhhhhHHHh
Q 008094 55 EGLLRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGPGVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAF 134 (578)
Q Consensus 55 ~~l~r~l~~~~~~~~~i~~~ig~g~~~~~~~~~~~~G~~~~~~~ii~~l~~~~~a~~~ael~~~~P~~~GG~y~~~~~~~ 134 (578)
++.||+++.+++.++.++.++|+|+|..++. ...+||..+++|+++++++++.+++++|+++++|+ +||.|+|+++.+
T Consensus 4 ~~~~r~l~~~~~~~l~ig~~iG~Gif~~~~~-~~~~G~~~~~~~li~~~~~~~~a~~~~el~~~~p~-~Gg~y~~~~~~~ 81 (445)
T 3l1l_A 4 DADAHKVGLIPVTLMVSGAIMGSGVFLLPAN-LASTGGIAIYGWLVTIIGALGLSMVYAKMSFLDPS-PGGSYAYARRCF 81 (445)
T ss_dssp ---CCCBCHHHHHHHHHHHHCSSHHHHHHHH-HHHHCTHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-TTTHHHHHHHHS
T ss_pred CCCCCcccHHHHHHHHHHhHHhhhHHhhHHH-HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHccCCC-CCCchhhHHhHc
Confidence 3467899999999999999999999999887 44578888999999999999999999999999999 999999999999
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCccccCCCccccccchhhhHHHHHHHHHHHHHHHh
Q 008094 135 NELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCW 214 (578)
Q Consensus 135 g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 214 (578)
||..|+..||.+++++....+..+...++++..++ |... .+....+++++++++...+|++
T Consensus 82 G~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~----------------~~~~~~~~~~~~~~~~~~in~~ 142 (445)
T 3l1l_A 82 GPFLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFF---PILK----------------DPWVLTITCVVVLWIFVLLNIV 142 (445)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTC---GGGG----------------SHHHHHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---cccc----------------ccHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999888888888877765432 2110 1123446788888999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCCCC-CCCCCC---hHHHHHHHHHHHhhccchHHHhhhhhhhcCCCC
Q 008094 215 GVGESSVLNSCMTVVKVIIVIVVIFAGAFEVDVSNWS-PFAPNG---FKEILTGATVVFFAYVGFDAVANSAEESKKPQR 290 (578)
Q Consensus 215 g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~g---~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~P~k 290 (578)
|+|..++++.+.+.++++.++++++.+....+.+++. ++.+.+ +.++..++...+|+|.|+|.+++++||+|||+|
T Consensus 143 g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~e~k~p~r 222 (445)
T 3l1l_A 143 GPKMITRVQAVATVLALIPIVGIAVFGWFWFRGETYMAAWNVSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVVKNPKR 222 (445)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHTTSTTCCCCCCCCC-----------HHHHHHHHHHTTTTTTHHHHGGGGBSSHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhhcccccCccCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCccc
Confidence 9999999999999999999888888877665554442 333433 557888999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHhccccccccC-CCChHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008094 291 DLPIGILGSLLICAALYVGVSLVLTGMVPYKFLD-EDAPLSDAFASRGLKYVSVLISFGAVAGLTTTLLVGLYVQSRLYL 369 (578)
Q Consensus 291 ~ip~a~~~s~~~~~i~y~~~~~~~~~~~~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~ 369 (578)
++|||++.+..+++++|++..+......|++++. .++|+.+++++.++++...++.+..+++.+++.++.+++.+|+++
T Consensus 223 ~ip~a~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~sR~~~ 302 (445)
T 3l1l_A 223 NVPIATIGGVLIAAVCYVLSTTAIMGMIPNAALRVSASPFGDAARMALGDTAGAIVSFCAAAGCLGSLGGWTLLAGQTAK 302 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTTSCSTTCTHHHHHHHHHCTTHHHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhccCcHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999887764 567999999999888888899999999999999999999999999
Q ss_pred HHhhcCCCchhhhhhcCCCCcchhHHHHHHHHHHHHHhhc-------CHHHHHHHHHHHHHHHHHHHHHHHhhheecCCC
Q 008094 370 GLGRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGILAGLF-------NVRVLSHILSVGTLTGYSVVSACVIALRWKDRT 442 (578)
Q Consensus 370 ~~a~d~~lP~~~~~~~~r~~~P~~ail~~~~i~~i~~~~~-------~~~~l~~~~~~~~l~~y~~~~~~~~~~r~~~~~ 442 (578)
+|||||.+|++|+|+| |+++|+++++++.+++.++.+.. .++.+.++.+++.++.|.+.+++.+++|+|+|
T Consensus 303 ~~a~dg~lP~~~~~~~-~~~~P~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~~~~~~r~~~~- 380 (445)
T 3l1l_A 303 AAADDGLFPPIFARVN-KAGTPVAGLIIVGILMTIFQLSSISPNATKEFGLVSSVSVIFTLVPYLYTCAALLLLGHGHF- 380 (445)
T ss_dssp HHHHTTSSCGGGGCCC-TTCCCHHHHHHHHHHHHHHHHSTTSHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHSSSS-
T ss_pred HHHhCCCCcHHHHhcC-CCCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCc-
Confidence 9999999999999999 67999999999998777665432 35789999999999999999999999987765
Q ss_pred CCCCccccchhhhhhHHHHHHHHHhhhhcchhhccchhHHHHHHHHHHHHHHHHHHHhccCCCCCCCccccccchHHHHH
Q 008094 443 SRNDSSRLTSAWRQGVICLIIIACCGFGAGLFYRINASYILLIVAVVIAVLASAMLCLRHGYSDPPGFSCPGVPLLPAVS 522 (578)
Q Consensus 443 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~p~~~~~~ 522 (578)
+ .|.|..|+++.++
T Consensus 381 ~------------------------------------------------------------------~r~~~~~~~~~~~ 394 (445)
T 3l1l_A 381 G------------------------------------------------------------------KARPAYLAVTTIA 394 (445)
T ss_dssp G------------------------------------------------------------------GGCTTTHHHHHHH
T ss_pred c------------------------------------------------------------------cccchhHHHHHHH
Confidence 2 1224557889999
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHHHHHHHhhhcccccCCC
Q 008094 523 IFFNLFLFAQLHYEAWWRFVILSFISIGLYAFYGQYHADPS 563 (578)
Q Consensus 523 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~~~~~~~~~~ 563 (578)
.+.+++.+...++.++....+++++|+.+|++++++++++.
T Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~~~~~~~~~~ 435 (445)
T 3l1l_A 395 FLYCIWAVVGSGAKEVMWSFVTLMVITAMYALNYNRLHKNP 435 (445)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHSTTCCCS
T ss_pred HHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhhhcccCc
Confidence 99999998888999999999999999999997776655443
|
| >3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-50 Score=424.09 Aligned_cols=364 Identities=25% Similarity=0.374 Sum_probs=323.8
Q ss_pred CcccccChhHHHHHHhhhhhhhhHHHHHHHHHhhhCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccchhhhhHHHhc
Q 008094 56 GLLRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGPGVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFN 135 (578)
Q Consensus 56 ~l~r~l~~~~~~~~~i~~~ig~g~~~~~~~~~~~~G~~~~~~~ii~~l~~~~~a~~~ael~~~~P~~~GG~y~~~~~~~g 135 (578)
+.||+++.+++.+++++.++|+|++..++.....+||+.+++|++++++.++.+++++|+++++|+ +||.|+|+++.+|
T Consensus 3 ~~~r~l~~~~~~~l~~g~~iG~gi~~~~~~~~~~~G~~~~~~~li~~~~~~~~~~~~~el~~~~P~-~Gg~y~~~~~~~G 81 (444)
T 3gia_A 3 LKNKKLSLWEAVSMAVGVMIGASIFSIFGVGAKIAGRNLPETFILSGIYALLVAYSYTKLGAKIVS-NAGPIAFIHKAIG 81 (444)
T ss_dssp CCCCCBCHHHHHHHHHHHHHHHHTTTSHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHHHTTCCC-TTTHHHHHHHHHC
T ss_pred ccCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHhhCCC-CCcHHHhHHHHhC
Confidence 357899999999999999999999999999999999999999999999999999999999999999 9999999999999
Q ss_pred hh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCccccCCCccccccchhhhHHHHHHHHHHHHHHHh
Q 008094 136 EL-TAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCW 214 (578)
Q Consensus 136 ~~-~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 214 (578)
|. .+...+|.+|++|....+..+..+++++..+++. ..+ +....+++.++++++..+|++
T Consensus 82 ~~~~~g~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~-------------~~~~~~~~~~~~~~~~~in~~ 142 (444)
T 3gia_A 82 DNIITGALSILLWMSYVISIALFAKGFAGYFLPLINA------PIN-------------TFNIAITEIGIVAFFTALNFF 142 (444)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC------CCC-------------HHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC------CCc-------------hHHHHHHHHHHHHHHHHHHHH
Confidence 96 3445589999999999999999999998876431 111 112335778888999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCCCCC-CCCCChHHHHHHHHHHHhhccchHHHhhhhhhhcCCCCChh
Q 008094 215 GVGESSVLNSCMTVVKVIIVIVVIFAGAFEVDVSNWSP-FAPNGFKEILTGATVVFFAYVGFDAVANSAEESKKPQRDLP 293 (578)
Q Consensus 215 g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~P~k~ip 293 (578)
|+|..++++.+.+.++++.++++++.++...+.+++.+ +.++++.+++.+....+|+|.|+|.+++++||+|||+|++|
T Consensus 143 g~~~~~~~~~~~~~~~i~~~~~~ii~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~G~e~~~~~~~e~k~P~r~ip 222 (444)
T 3gia_A 143 GSKAVGRAEFFIVLVKLLILGLFIFAGLITIHPSYVIPDLAPSAVSGMIFASAIFFLSYMGFGVITNASEHIENPKKNVP 222 (444)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCGGGTSCCCSHHHHHHHHHHHHHGGGGGTHHHHHHTTGGGBSSHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcCCCCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHccCcccchh
Confidence 99999999999999999999988888887767777765 45567778888999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccccccccC--CCChHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008094 294 IGILGSLLICAALYVGVSLVLTGMVPYKFLD--EDAPLSDAFASRGLKYVSVLISFGAVAGLTTTLLVGLYVQSRLYLGL 371 (578)
Q Consensus 294 ~a~~~s~~~~~i~y~~~~~~~~~~~~~~~~~--~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~ 371 (578)
||+..+..++.++|++..+......|++++. ++.|+.++.+...+++...++.+..+++.+++.++.+++.||++++|
T Consensus 223 ~ai~~~~~~~~~~y~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~sR~l~a~ 302 (444)
T 3gia_A 223 RAIFISILIVMFVYVGVAISAIGNLPIDELIKASENALAVAAKPFLGNLGFLLISIGALFSISSAMNATIYGGANVAYSL 302 (444)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHTGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCHHHHhcccchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999988887663 34678888888877888888999999999999999999999999999
Q ss_pred hhcCCCchhhhhhcCCCCcchhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHhhheecCC
Q 008094 372 GRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGILAGLFNVRVLSHILSVGTLTGYSVVSACVIALRWKDR 441 (578)
Q Consensus 372 a~d~~lP~~~~~~~~r~~~P~~ail~~~~i~~i~~~~~~~~~l~~~~~~~~l~~y~~~~~~~~~~r~~~~ 441 (578)
||||.+|++|+|+| | ++|.++++++.+++.++..+.+++.+.++.+.+.++.|.+.+++.+++|++++
T Consensus 303 a~dg~lP~~f~~~~-~-~~P~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~ 370 (444)
T 3gia_A 303 AKDGELPEFFERKV-W-FKSTEGLYITSALGVLFALLFNMEGVASITSAVFMVIYLFVILSHYILIDEVG 370 (444)
T ss_dssp HHHSSCCSSCCTTS-C-CSCTHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHC
T ss_pred HHCCCCCHHHhCCC-C-CCCcHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Confidence 99999999999998 4 45999999999998888888899999999999999999999999998887764
|
| >4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-45 Score=396.31 Aligned_cols=378 Identities=19% Similarity=0.237 Sum_probs=285.4
Q ss_pred CCCCcccccChhHHHHHHhhhhhhhhHHHHHHHHHhhhCcHHHHHHHHHHHHH-HHHHHHHHHHhh--cCCCCccchhhh
Q 008094 53 DGEGLLRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGPGVTISFLLAGAAS-VLNALCYAELAS--RFPAVVGGAYLY 129 (578)
Q Consensus 53 ~~~~l~r~l~~~~~~~~~i~~~ig~g~~~~~~~~~~~~G~~~~~~~ii~~l~~-~~~a~~~ael~~--~~P~~~GG~y~~ 129 (578)
+++++||+++.+++++++++.++| ++..+. ...+|+..++.+++++++. ++.+++++|+++ ++| +||.|+|
T Consensus 5 ~~~~~~r~l~~~~~~~l~~~~~ig--~~~~~~--~~~~G~~~~~~~~i~~~~~~l~~al~~ael~s~~~~P--~GG~y~~ 78 (511)
T 4djk_A 5 VQTGKAKQLTLLGFFAITASMVMA--VYEYPT--FATSGFSLVFFLLLGGILWFIPVGLCAAEMATVDGWE--EGGVFAW 78 (511)
T ss_dssp -------CCCHHHHHHHTGGGGCC--GGGHHH--HHTTTTHHHHHHHHHHHHTHHHHHHHHHHHHTTSCC-----CHHHH
T ss_pred ccCccCccccHHHHHHHHHHHHHh--hchhHH--HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHcccccCC--CCChhhh
Confidence 456788999999999999999986 444443 3568887777777777774 579999999999 999 6999999
Q ss_pred hHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCccccCCCccccccchhhhHHHHHHHHHHH
Q 008094 130 AYTAFNELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLT 209 (578)
Q Consensus 130 ~~~~~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (578)
+++.+||..|+.+||.+|+++....+......+.++..+++ .|.+. .......+++++++++++
T Consensus 79 ~~~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~p~~~---------------~~~~~~~~~~~~~~~~~~ 142 (511)
T 4djk_A 79 VSNTLGPRWGFAAISFGYLQIAIGFIPMLYFVLGALSYILK-WPALN---------------EDPITKTIAALIILWALA 142 (511)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHTTTT-CGGGT---------------SCSSHHHHHHHHHHHHHH
T ss_pred HHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-Ccccc---------------cCcHHHHHHHHHHHHHHH
Confidence 99999999999999999999999888888877777754321 12111 111234467888889999
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHH-HHHHHhhhhccc---cc----CCCCCCCCCC-hHHHHHHHHHHHhhccchHHHhh
Q 008094 210 IVLCWGVGESSVLNSCMTVVKVII-VIVVIFAGAFEV---DV----SNWSPFAPNG-FKEILTGATVVFFAYVGFDAVAN 280 (578)
Q Consensus 210 ~i~~~g~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~---~~----~~~~~~~~~g-~~~~~~~~~~~~~~~~G~e~~~~ 280 (578)
.+|++|+|..++++.+.+.++++. ++++++.+.... +. .+++++.|+. ..+.+.++...+|+|.|+|.+++
T Consensus 143 ~in~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~G~e~~~~ 222 (511)
T 4djk_A 143 LTQFGGTKYTARIAKVGFFAGILLPAFILIALAAIYLHSGAPVAIEMDSKTFFPDFSKVGTLVVFVAFILSYMGVEASAT 222 (511)
T ss_dssp HHHHTCSSSHHHHTHHHHHHTTHHHHHHHHHHHHHHTC------------CCCCCTTSTTTTTTHHHHHHHHTTGGGGTG
T ss_pred HHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCcccccCCCcccchHHHHHHHHHHHHhhHHHHHH
Confidence 999999999999999988775443 444444443221 11 1223333321 11233456678999999999999
Q ss_pred hhhhhcCCCCChhHHHHHHHHHHHHHHHHHHHHHhccccccccCCCChHHHHH----HHcC--hhHHHHHHHHHHHHHHH
Q 008094 281 SAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLDEDAPLSDAF----ASRG--LKYVSVLISFGAVAGLT 354 (578)
Q Consensus 281 ~~~E~k~P~k~ip~a~~~s~~~~~i~y~~~~~~~~~~~~~~~~~~~~p~~~~~----~~~~--~~~~~~~~~~~~~~~~~ 354 (578)
++||+|||+|++|||++.+..++.++|++..++...+.|+++...+++..+.+ +..+ .++...++.+..+++.+
T Consensus 223 ~a~E~k~P~k~ip~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 302 (511)
T 4djk_A 223 HVNEMSNPGRDYPLAMLLLMVAAICLSSVGGLSIAMVIPGNEINLSAGVMQTFTVLMSHVAPEIEWTVRVISALLLLGVL 302 (511)
T ss_dssp GGSSSSCCTTTHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTSCCSSSTHHHHHHHHHSSSCSSCTTHHHHHHHHHHHHHH
T ss_pred HHHhccCcccchhHHHHHHHHHHHHHHHHHHHHHHeecCHhhccccchHHHHHHHHHHHhCccchHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999988876555544433 3345 57788888899999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCchhhhhhcCCCCcchhHHHHHHHHHHH-HHhhcC--------HHHHHHHHHHHHHHH
Q 008094 355 TTLLVGLYVQSRLYLGLGRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGI-LAGLFN--------VRVLSHILSVGTLTG 425 (578)
Q Consensus 355 ~~~~~~~~~~sR~l~~~a~d~~lP~~~~~~~~r~~~P~~ail~~~~i~~i-~~~~~~--------~~~l~~~~~~~~l~~ 425 (578)
++.++.+++.||++++|||||.+|++|+|+| |+++|++|++++.++..+ +..+.+ ++.+.++.+++.++.
T Consensus 303 ~~~~~~~~~~sR~l~a~ardg~lP~~~~~~~-~~~~P~~ai~~~~~~~~l~~~~~~~~~~~~~~~f~~l~~~~~~~~~~~ 381 (511)
T 4djk_A 303 AEIASWIVGPSRGMYVTAQKNLLPAAFAKMN-KNGVPVTLVISQLVITSIALIILTNTGGGNNMSFLIALALTVVIYLCA 381 (511)
T ss_dssp HHHHHHTTHHHHHTCHHHHGGGCSSSCCCCC-SSSCCCHHHHHHHHHHHHHHHHHHSSSSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHccCCcccHHHHhcC-CCCCcHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999 579999999988544333 233334 578888899999999
Q ss_pred HHHHHHHHhhheecCCCCCCCccccchh
Q 008094 426 YSVVSACVIALRWKDRTSRNDSSRLTSA 453 (578)
Q Consensus 426 y~~~~~~~~~~r~~~~~~~~~~~~~~~~ 453 (578)
|.+.+++.+++|+|+++.+||++.+.++
T Consensus 382 y~~~~~~~~~~r~~~~~~~~~~~~~~~~ 409 (511)
T 4djk_A 382 YFMLFIGYIVLVLKHPDLKRTFNIPGGK 409 (511)
T ss_dssp HHHHHHHHHHHHHHCCSCCCSCCCSSTT
T ss_pred HHHHHHHHHHHHHhCCCCCCCeecCCCc
Confidence 9999999999998887776665444333
|
| >2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A | Back alignment and structure |
|---|
Probab=99.10 E-value=2.3e-07 Score=98.22 Aligned_cols=283 Identities=13% Similarity=0.034 Sum_probs=151.3
Q ss_pred ccccChhHHHHHHhhhhhhhhHHHHHHHHHhhhCcH---HHHHHHHHHHHHHHHHHHHHHHhhcCCCCccchh-hhhHHH
Q 008094 58 LRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGPG---VTISFLLAGAASVLNALCYAELASRFPAVVGGAY-LYAYTA 133 (578)
Q Consensus 58 ~r~l~~~~~~~~~i~~~ig~g~~~~~~~~~~~~G~~---~~~~~ii~~l~~~~~a~~~ael~~~~P~~~GG~y-~~~~~~ 133 (578)
+|+.++++.+.+-++..+..+-+...+.... |-. ++++.+++.++..... +-++..-|+ .|-.+ ...+..
T Consensus 24 ~R~~~~~~~~~~W~g~~~~i~~~~~Ga~~~~--GLs~~~a~lai~lG~li~~~~~---~l~~~~G~~-~Gl~~~v~~R~~ 97 (501)
T 2jln_A 24 ERSVGPFSLAAIWFAMAIQVAIFIAAGQMTS--SFQVWQVIVAIAAGCTIAVILL---FFTQSAAIR-WGINFTVAARMP 97 (501)
T ss_dssp GCCBCHHHHHHHHHHHHCSTHHHHHHHHHTT--TSCHHHHHHHHHHHHHHHHHHH---HHHTHHHHH-HCCCHHHHTTTT
T ss_pred hCCCCHHHHHHHHHHHHHHHHHHHHHHHHhc--CcCHHHHHHHHHHHHHHHHHHH---HHHhHHHhh-cCCChhhhhHhh
Confidence 5778999999888887776665555444433 432 5555555555444333 444444444 44444 466777
Q ss_pred hchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-ccccCCCCccccCCCccccccchhhhHHHHHHHHHHHHHH
Q 008094 134 FNELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELF-PFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVL 212 (578)
Q Consensus 134 ~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 212 (578)
||+..+.+......+..+...+......++.+..+++.. +. .+.+ +..+++.++...+.
T Consensus 98 FG~~Gs~i~~ll~~i~~igw~~v~~~~gg~al~~~~~~~~g~----~~~~----------------v~~~i~~~l~~~~~ 157 (501)
T 2jln_A 98 FGIRGSLIPITLKALLSLFWFGFQTWLGALALDEITRLLTGF----TNLP----------------LWIVIFGAIQVVTT 157 (501)
T ss_dssp SCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC----CCHH----------------HHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc----chHH----------------HHHHHHHHHHHHHH
Confidence 999988888877777766666666666667666654311 10 0011 23444555666777
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHhhhhccccc--CCCCCCCC-CChHHHHHHHHH-HHhhccchHHHhhhhhhhcCC
Q 008094 213 CWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEVDV--SNWSPFAP-NGFKEILTGATV-VFFAYVGFDAVANSAEESKKP 288 (578)
Q Consensus 213 ~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~-~g~~~~~~~~~~-~~~~~~G~e~~~~~~~E~k~P 288 (578)
..|.|...+++.+...+.++..+.+.+..+...+. +......+ ....+++.++.. ..+...+.-..+.++.+.|++
T Consensus 158 ~~G~~~i~~~~~~~~p~~~i~~i~~~~~~l~~~g~~~~~~~~~~~~~~~~~f~~ai~~~~~~~~~~~~~~~DysRy~~~~ 237 (501)
T 2jln_A 158 FYGITFIRWMNVFASPVLLAMGVYMVYLMLDGADVSLGEVMSMGGENPGMPFSTAIMIFVGGWIAVVVSIHDIVKECKVD 237 (501)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHTTCCCSSCCSCHHHHHHHHHTTTHHHHTTTHHHHTTBCCC
T ss_pred HhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhccCCccchHHHHHHHHHHHHHHHHHHhccCcccccCCCC
Confidence 89999999999998888777666665544433221 11111111 111234433333 222223334467788888887
Q ss_pred CCC-----------hhHHHHHHHHHHHHHHHHHHHHHhccccccccCCCChHHHHHHHcChhHH-HHHHH-HHHHHHHHH
Q 008094 289 QRD-----------LPIGILGSLLICAALYVGVSLVLTGMVPYKFLDEDAPLSDAFASRGLKYV-SVLIS-FGAVAGLTT 355 (578)
Q Consensus 289 ~k~-----------ip~a~~~s~~~~~i~y~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~-~~~~~-~~~~~~~~~ 355 (578)
++. .-.+...+..+...+..+........ ....+|...+.....++.. ..+.. +.++++.++
T Consensus 238 ~~~~~~~~~~~~~~~~~g~~lG~~i~~~~~~~lG~~~~~~-----~~~~dp~~~l~~~l~~~~~~~~~~~~~~~~la~i~ 312 (501)
T 2jln_A 238 PNASREGQTKADARYATAQWLGMVPASIIFGFIGAASMVL-----VGEWNPVIAITEVVGGVSIPMAILFQVFVLLATWS 312 (501)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HSCSCHHHHHHHHHTCCCHHHHHHHHHHHHHHHHT
T ss_pred ccccccchhhccchHHHHHHHHHHHHHHHHHHHHHHHHHh-----ccccCHHHHHHHHhccchHHHHHHHHHHHHHHHHH
Confidence 541 22333333333332222222222111 1224455444332333332 44555 666667766
Q ss_pred HHHH-HHHHHHHHHHHH
Q 008094 356 TLLV-GLYVQSRLYLGL 371 (578)
Q Consensus 356 ~~~~-~~~~~sR~l~~~ 371 (578)
+... ..++.+--+..+
T Consensus 313 tn~~~n~ys~~~~l~~~ 329 (501)
T 2jln_A 313 TNPAANLLSPAYTLCST 329 (501)
T ss_dssp THHHHHTHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHh
Confidence 6653 566776665554
|
| >2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A | Back alignment and structure |
|---|
Probab=98.45 E-value=0.00048 Score=74.35 Aligned_cols=282 Identities=12% Similarity=0.117 Sum_probs=128.2
Q ss_pred ccccChhHHHHHHhhhhhhhhHHHH-HHHHHhhhCc-HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccchhhhhHHHhc
Q 008094 58 LRRLGLFELVLIGVGASVGAGIFVV-TGTVARDAGP-GVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFN 135 (578)
Q Consensus 58 ~r~l~~~~~~~~~i~~~ig~g~~~~-~~~~~~~~G~-~~~~~~ii~~l~~~~~a~~~ael~~~~P~~~GG~y~~~~~~~g 135 (578)
.|+++++...+-.+++.+++.-+.. ++..+. .|- ...+.|. ..+.....++.+...-.+. + .-..++|.++-||
T Consensus 48 GR~l~~~~~~~Sl~at~~sa~t~lG~~g~~y~-~G~~~~~~~~~-~~~~~~~~~~~~~p~~~r~-~-~~T~~e~l~~Rfg 123 (593)
T 2xq2_A 48 GKSLPWWAVGASLIAANISAEQFIGMSGSGYS-IGLAIASYEWM-SAITLIIVGKYFLPIFIEK-G-IYTIPEFVEKRFN 123 (593)
T ss_dssp ---CCHHHHHHHHHGGGSSHHHHHHHHHHHHH-TCGGGGHHHHH-HHHHHHHHHHTHHHHHHHT-T-CCSHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHhcHHHHhhHhHHHHH-cCHHHHHHHHH-HHHHHHHHHHHHHHHHHhC-C-CCCcHHHHHHHcc
Confidence 4778888765555556666555544 444444 443 2333222 2222233344444444443 2 4578999999999
Q ss_pred hhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhcccccCCCCccccCCCccccccchhhhHHHHHHHHHHHHHHHh
Q 008094 136 ELTAFLVFAQLMLDYHI-GAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCW 214 (578)
Q Consensus 136 ~~~g~~~g~~~~l~~~~-~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 214 (578)
+....+.+....+.+.. ..+....+.+..++.+++. +.+. .+.+...+.......-
T Consensus 124 ~~~~~~~ai~~l~~~~~~~~~~~l~~~~~~l~~~~Gi--------~~~~---------------~i~i~~~i~~~Yt~~G 180 (593)
T 2xq2_A 124 KKLKTILAVFWISLYIFVNLTSVLYLGGLALETILGI--------PLMY---------------SILGLALFALVYSIYG 180 (593)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCC--------CHHH---------------HHHHHHHHHHHHHHTT
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc--------cHHH---------------HHHHHHHHHHHHHHhc
Confidence 88877666554443332 2333444445555554431 1110 0111122222233334
Q ss_pred hhHH---HHHHHHHHHHHHHHHHHHHHhh--hhc-----------ccccCCCCCCCCC---------ChHHHHHHHHHHH
Q 008094 215 GVGE---SSVLNSCMTVVKVIIVIVVIFA--GAF-----------EVDVSNWSPFAPN---------GFKEILTGATVVF 269 (578)
Q Consensus 215 g~~~---~~~~~~~~~~~~~~~~~~~~i~--~~~-----------~~~~~~~~~~~~~---------g~~~~~~~~~~~~ 269 (578)
|.|. +..+|.++..+..+.+.++.+. +-. ....+.++.+.+. ++..++.+.....
T Consensus 181 Gl~av~~TD~iQ~iiml~~~l~v~~~~l~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 260 (593)
T 2xq2_A 181 GLSAVVWTDVIQVFFLVLGGFMTTYMAVSFIGGTDGWFAGVSKMVDAAPGHFEMILDQSNPQYMNLPGIAVLIGGLWVAN 260 (593)
T ss_dssp C---CCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGHHHHHHHHHHHHCGGGSCSSCCSSSGGGGTSCTTHHHHSTHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHhhChhhcccccCCCCcccccchHHHHHHHHHHHHH
Confidence 5554 4445544433333222222211 100 0001222211111 1211111121222
Q ss_pred hhccchHH-HhhhhhhhcCCCCChhHHHHHHHHHHHHHHHHHHH---HHhcc-cc--------------cccc-CCCChH
Q 008094 270 FAYVGFDA-VANSAEESKKPQRDLPIGILGSLLICAALYVGVSL---VLTGM-VP--------------YKFL-DEDAPL 329 (578)
Q Consensus 270 ~~~~G~e~-~~~~~~E~k~P~k~ip~a~~~s~~~~~i~y~~~~~---~~~~~-~~--------------~~~~-~~~~p~ 329 (578)
..+.|.+. ..+-.-+.||+ |+..|+.+.+.....++.++... ..... .+ ..+. +.|..+
T Consensus 261 ~~~~~~~q~~~qR~laaks~-k~ar~~~~~~~~~~~~~~~~~~~~Gl~a~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~~ 339 (593)
T 2xq2_A 261 LYYWGFNQYIIQRTLAAKSV-SEAQKGIVFAAFLALIVPFLVVLPGIAAYVITSDPQLMASLGDIAATNLPSAANADKAY 339 (593)
T ss_dssp HHHHTTTCSHHHHHHTTSCH-HHHHHHHHHHHHHTTTHHHHHTHHHHHHHHHHTCHHHHHHHC-----CCCCSTBGGGHH
T ss_pred HHhhcCChHHHHHhheeCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccCCCCCChhhHH
Confidence 33445442 34555577886 67888887776654444332211 11111 00 0112 234445
Q ss_pred HHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008094 330 SDAFASRGLKYVSVLISFGAVAGLTTTLLVGLYVQSRLY 368 (578)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l 368 (578)
.... +..++++..++..+.+.+.+++..+.+.+.|-++
T Consensus 340 p~l~-~~lp~~l~gl~~a~llaA~mST~~s~l~a~st~~ 377 (593)
T 2xq2_A 340 PWLT-QFLPVGVKGVVFAALAAAIVSSLASMLNSTATIF 377 (593)
T ss_dssp HHHH-HTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHH-HHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555 6677888878777878888888888777776543
|
| >3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.30 E-value=0.0011 Score=70.57 Aligned_cols=109 Identities=10% Similarity=0.073 Sum_probs=59.0
Q ss_pred ccccChhHHHHHHhhhhhhhhHHHHHHHHHhhhCcH-HHHHHHHHHHHHHHHHHHHHHHhhcCCCCccchhhhhHHHhch
Q 008094 58 LRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGPG-VTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNE 136 (578)
Q Consensus 58 ~r~l~~~~~~~~~i~~~ig~g~~~~~~~~~~~~G~~-~~~~~ii~~l~~~~~a~~~ael~~~~P~~~GG~y~~~~~~~g~ 136 (578)
-|+++++...+-.+++.+++.-+...+......|-. ..+.|. ..+.....+..+...-.+. + .=..++|.++-||+
T Consensus 19 GR~l~~~~~~~s~~at~~Sa~~~lG~~g~~y~~G~~~~~~~~~-~~~~~~i~~~~~~p~~~~~-~-~~T~~e~l~~Rfg~ 95 (530)
T 3dh4_A 19 GKSLPWWAVGASLIAANISAEQFIGMSGSGYSIGLAIASYEWM-SAITLIIVGKYFLPIFIEK-G-IYTIPEFVEKRFNK 95 (530)
T ss_dssp CSCCCHHHHHHHHHHHHCSHHHHTHHHHHHHHTCGGGHHHHHH-HHHHHHHHHHHTHHHHHHT-T-CCSHHHHHHHHTCH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHH-HHHHHHHHHHHHHHHHHHc-C-CccHHHHHHHHcCc
Confidence 378999988776667777665555544333334543 322222 2222233344444444443 2 45789999999999
Q ss_pred hhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Q 008094 137 LTAFLVFAQLMLDYHI-GAASIARSLASYVVSIL 169 (578)
Q Consensus 137 ~~g~~~g~~~~l~~~~-~~a~~~~~~~~~~~~~~ 169 (578)
....+.+....+.+.. ..+......+..++.++
T Consensus 96 ~~~~~~a~~~l~~~~~~~~~~~l~~~~~~~~~~~ 129 (530)
T 3dh4_A 96 KLKTILAVFWISLYIFVNLTSVLYLGGLALETIL 129 (530)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8877766655444432 22333333444444443
|
| >2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ... | Back alignment and structure |
|---|
Probab=97.33 E-value=0.21 Score=52.17 Aligned_cols=242 Identities=13% Similarity=0.113 Sum_probs=122.2
Q ss_pred ChhHHHHHHhhhhhhhhHHHHHHHH-HhhhCcHHHHHHHHHHHH-HHH---HHHHHHHHhhcCCCCccchhhhhHHHhch
Q 008094 62 GLFELVLIGVGASVGAGIFVVTGTV-ARDAGPGVTISFLLAGAA-SVL---NALCYAELASRFPAVVGGAYLYAYTAFNE 136 (578)
Q Consensus 62 ~~~~~~~~~i~~~ig~g~~~~~~~~-~~~~G~~~~~~~ii~~l~-~~~---~a~~~ael~~~~P~~~GG~y~~~~~~~g~ 136 (578)
+..+...-++|..+|.|=....+.. .+++|.+.++.+++..++ .++ .=+++++.++..-+ .|..-.|-+. ..+
T Consensus 10 sr~~FiLa~~G~AVGLGNiWRFPyl~~~nGGgAFlipYli~l~~~GiPll~~E~alGq~~~~~~r-~~~i~a~~~l-~~~ 87 (519)
T 2a65_A 10 TRLGLILAMAGNAVGLGNFLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIEWAMGRYGGAQGH-GTTPAIFYLL-WRN 87 (519)
T ss_dssp CHHHHHHHHHHHHSSHHHHTHHHHHHHHTTTHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTTC-CSHHHHHHHH-SCS
T ss_pred cHHHHHHHHHHHHhcccHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHhcccchhccC-CCHHHHHHHh-cCC
Confidence 3456666778888998866666654 456666666666655444 333 33344444444444 4555444322 111
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc----cc-ccCCC--C-------ccccC----C--Cccccccchh
Q 008094 137 LTAFLVFAQLMLDYHIGAASIARSLASYVVSILELF----PF-FKENI--P-------SWIGH----G--GEEFLGGTLS 196 (578)
Q Consensus 137 ~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~----~~-~~~~~--~-------~~~~~----~--~~~~~~~~~~ 196 (578)
...-..||...+.-......+....+-.+..+++.+ |. ++.+. . .+... . ..+.-.-...
T Consensus 88 ~~~~giG~~~v~~~~~i~~yY~vi~gW~l~Y~~~s~~~~lp~~w~~~~~~~~~~~~~~~~f~~~l~~~~~~~~~g~~~~~ 167 (519)
T 2a65_A 88 RFAKILGVFGLWIPLVVAIYYVYIESWTLGFAIKFLVGLVPEPPPNATDPDSILRPFKEFLYSYIGVPKGDEPILKPSLF 167 (519)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCCC--CCHHHHHHHHHHHHHHHHTCCSSSSCBCCCCHH
T ss_pred cCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccCCcccccCcHHHHHHHHHCCCCCcccccCccHH
Confidence 111223343333322222233333333333333221 20 11110 0 00000 0 0000000122
Q ss_pred hhHHHHHHHHHHHHHHHhhh-HHHHHHHHHHHHHHHHHHHHHHhhhhcccc-------------cCCCCCCCCCChHHHH
Q 008094 197 INILAPILLALLTIVLCWGV-GESSVLNSCMTVVKVIIVIVVIFAGAFEVD-------------VSNWSPFAPNGFKEIL 262 (578)
Q Consensus 197 ~~~~~~~~~~~~~~i~~~g~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-------------~~~~~~~~~~g~~~~~ 262 (578)
..+..++..++...+..+|+ |-.+|.+.+......+.++++.+-++...+ ..+|+... +...+.
T Consensus 168 ~~~~~~~~w~i~~~ii~~Gv~kgiek~~~~~mp~l~vlliiL~ir~ltLpGp~~~A~~Gl~~~~~Pd~s~L~--~~~vw~ 245 (519)
T 2a65_A 168 AYIVFLITMFINVSILIRGISKGIERFAKIAMPTLFILAVFLVIRVFLLETPNGTAADGLNFLWTPDFEKLK--DPGVWI 245 (519)
T ss_dssp HHHHHHHHHHHHHHHHTTCTTTTHHHHHHHHHHHHHHHHHHHHHHHTTCEETTEEHHHHHHHHHSCCTTSTT--CHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhcCCHHHhC--CHHHHH
Confidence 23334455556667777899 678999988888777777766665443322 11222221 123567
Q ss_pred HHHHHHHhhcc-chHHHhhhhhhhcCCCCChhHHHHHHHHHHHHHHH
Q 008094 263 TGATVVFFAYV-GFDAVANSAEESKKPQRDLPIGILGSLLICAALYV 308 (578)
Q Consensus 263 ~~~~~~~~~~~-G~e~~~~~~~E~k~P~k~ip~a~~~s~~~~~i~y~ 308 (578)
.+...++|++. |+-....++.-.|+ +.|++|............-+
T Consensus 246 ~A~gQ~FFSLslG~G~~ity~SY~~~-~~n~~~~a~~v~~~n~~~sl 291 (519)
T 2a65_A 246 AAVGQIFFTLSLGFGAIITYASYVRK-DQDIVLSGLTAATLNEKAEV 291 (519)
T ss_dssp HHHHHHHHHHTTTSSHHHHHHTTSCT-TSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHhHHhhhhcccCC-CcChHhhHHHHHHHHHHHHH
Confidence 78888889885 88788888877775 57888876655555544433
|
| >4ain_A Glycine betaine transporter BETP; membrane protein, chemosensor and osmosensor, secondary TRAN sodium coupled transport; HET: FLC CM5; 3.10A {Corynebacterium glutamicum} PDB: 4doj_A* 2w8a_A 2wit_A 3p03_A | Back alignment and structure |
|---|
Probab=85.58 E-value=37 Score=35.25 Aligned_cols=25 Identities=12% Similarity=0.247 Sum_probs=19.4
Q ss_pred ccccChhHHHHHHhhhhhhhhHHHH
Q 008094 58 LRRLGLFELVLIGVGASVGAGIFVV 82 (578)
Q Consensus 58 ~r~l~~~~~~~~~i~~~ig~g~~~~ 82 (578)
|.+++..+.++|.+++-+|.|+...
T Consensus 93 kPefS~~sW~aMlF~AGmGiGl~Fw 117 (539)
T 4ain_A 93 APEFRTVSWISMMFAAGMGIGLMFY 117 (539)
T ss_dssp CCSSCHHHHHHHHHTTSCCTHHHHH
T ss_pred CCCCcchHHHHHHHHHhhcchheee
Confidence 4568888888899998888876543
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 578 | |||
| d2a65a1 | 509 | Na(+):neurotransmitter symporter homologue LeuT {A | 96.3 |
| >d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter homologue LeuT {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: SNF-like superfamily: SNF-like family: SNF-like domain: Na(+):neurotransmitter symporter homologue LeuT species: Aquifex aeolicus [TaxId: 63363]
Probab=96.30 E-value=0.64 Score=46.27 Aligned_cols=60 Identities=18% Similarity=0.229 Sum_probs=36.6
Q ss_pred ChhHHHHHHhhhhhhhhHHHHHHHH-HhhhCcHHHHHHHHHHHH-HHH---HHHHHHHHhhcCCC
Q 008094 62 GLFELVLIGVGASVGAGIFVVTGTV-ARDAGPGVTISFLLAGAA-SVL---NALCYAELASRFPA 121 (578)
Q Consensus 62 ~~~~~~~~~i~~~ig~g~~~~~~~~-~~~~G~~~~~~~ii~~l~-~~~---~a~~~ael~~~~P~ 121 (578)
+..+.+.-.+|..+|.|=....+.. .++||...++.+++..++ .++ .=++.++.++.-|.
T Consensus 6 s~~~fila~~g~avGlGNiWrFPyl~~~nGGgaFlipY~~~l~l~gvPll~lE~~lGq~~~~g~i 70 (509)
T d2a65a1 6 TRLGLILAMAGNAVGLGNFLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIEWAMGRYGGAQGH 70 (509)
T ss_dssp CHHHHHHHHHHHHSSHHHHTHHHHHHHHTTTHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTTC
T ss_pred ChHHHHHHHHHHHhcccHHHhhhHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcc
Confidence 3456666778888898777776654 466776666666555444 333 33445555555554
|