Citrus Sinensis ID: 008096

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------
Protein Sequence
MEEKGGSHVNRKKGGIITMPFIFANEVCEKLAVVGFHANMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADTYAGRFWTITVASIIYQIGMFSLTLSAILPQLRPPPCQGDQVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAVLVAVTVLVYIQDNVGWNWGLGIPTVAMFLSIIAFVFGYPLYRNLNPAGSPFVRLMQVCVAAFRKRNLDMVSDPNVLYQNEELDASICLDGKLLHTKHMKFLDKAAIVTEEDDIKSPNLWRLNTVHRVEELKSVIRMGPIWASGILLITAYAQQGTFSLQQAKSMDRHLTKSFQIPAGSMSVFTMVSMLSTIALYDRIIIPVARKFTGLDRGITFLHRMGIGFVISVLATLVAGFVEMKRKQAALAHGLVDKPHIIIPISVLWLVPQYSLHGIAEAFMSVGHLEFLYDQAPESMRSTATALFWTANSIGNYVSTLLVTLVHKFSAGPNGSNWLPDNNLNKGKLEYFYWLITLLQVVNVIYYFFCAKIYTFKPIQMHQKGGDSSSSEGVELDNKV
Secondary Structure (PSIPRED)
cccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHcccccHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHcHHHHHHHHHHHHHHHHEEEEEEEEEccccHHHcHHHHHHHHHHHHHHHHccccEEEccccccccHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccEEEEEccccccccccccccccHHHHHHHHHHHccHHHHHHHHHHHHHHHccHHHHHHHHHHHHccccccEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHEEcccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHcHHHHHHHHHHHHHHHHHccccEEEccccccHHHHHHHHHHHHHHHccccccccHHHHHccccHHHHcccccccccccccEEHccEEEEEcccccccccccEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHcHHHcHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHEHHHHcHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHcHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
meekggshvnrkkggiitmPFIFANEVCEKLAVVGFHANMISYLTTQLHMPLTKAAntltnfggtgsltpligafvadtyagrFWTITVASIIYQIGMFSLTLSailpqlrpppcqgdqvckeadTGQLAILYASLLLAALgsggirpcvvafgadqfdetdpkqatkTWKYFNWYYFVMGAAVLVAVTVLVYIQDnvgwnwglgipTVAMFLSIIAFVFgyplyrnlnpagspFVRLMQVCVAAFRKrnldmvsdpnvlyqneeldasicldgkllhtKHMKFLDKAAIvteeddikspnlwrlnTVHRVEELKSVIRMGPIWASGILLITAYAQQGTFSLQQAKSMDRHltksfqipagsmSVFTMVSMLSTIALYDRIIipvarkftgldrgitFLHRMGIGFVISVLATLVAGFVEMKRKQAALAhglvdkphiiipisvlwlvpqyslhGIAEAFMSVGhleflydqapesmRSTATALFWTANSIGNYVSTLLVTLVHKfsagpngsnwlpdnnlnkgklEYFYWLITLLQVVNVIYYFFCakiytfkpiqmhqkggdssssegveldnkv
Flexible Loop (DISEMBL)
meekggshvnrkkggiiTMPFIFANEVCEKLAVVGFHANMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADTYAGRFWTITVASIIYQIGMFSLTLSAILPQLRPPPCQGDQVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAVLVAVTVLVYIQDNVGWNWGLGIPTVAMFLSIIAFVFGYPLYRNLNPAGSPFVRLMQVCVAAFRKRNLDMVSDPNVLYQNEELDASICLDGKLLHTKHMKFLDKAAIvteeddikspnlwrlntVHRVEELKSVIRMGPIWASGILLITAYAQQGTFSLQQAKSMDRHLTKSFQIPAGSMSVFTMVSMLSTIALYDRIIIPVARKFTGLDRGITFLHRMGIGFVISVLATLVAGFVEMKRKQAALAHGLVDKPHIIIPISVLWLVPQYSLHGIAEAFMSVGHLEFLYDQAPESMRSTATALFWTANSIGNYVSTLLVTLVHKFSAGPNGSNWLPDNNLNKGKLEYFYWLITLLQVVNVIYYFFCAKIYTFKPIQMHqkggdssssegveldnkv
Low Complexity Region (SEG)
MEEKGGSHVNRKKGGIITMPFIFANEVCEKLAVVGFHANMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADTYAGRFWTITVASIIYQIGMFSLTLSAILPQLRPPPCQGDQVCKEADTgqlailyaslllaalgsggiRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGaavlvavtvlvYIQDNVGWNWGLGIPTVAMFLSIIAFVFGYPLYRNLNPAGSPFVRLMQVCVAAFRKRNLDMVSDPNVLYQNEELDASICLDGKLLHTKHMKFLDKAAIVTEEDDIKSPNLWRLNTVHRVEELKSVIRMGPIWASGILLITAYAQQGTFSLQQAKSMDRHLTKSFQIPAGSMSVFTMVSMLSTIALYDRIIIPVARKFTGLDRGITFLHRMGIGFVISVLATLVAGFVEMKRKQAALAHGLVDKPHIIIPISVLWLVPQYSLHGIAEAFMSVGHLEFLYDQAPESMRSTATALFWTANSIGNYVSTLLVTLVHKFSAGPNGSNWLPDNNLNKGKLEYFYWLITLLQVVNVIYYFFCAKIYTFKPIQMHQKGGDSSSSEGVELDNKV
Disordered region (IsUnstruct)
*************GGIITMPFIFANEVCEKLAVVGFHANMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADTYAGRFWTITVASIIYQIGMFSLTLSAILPQLRPPPCQGDQVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAVLVAVTVLVYIQDNVGWNWGLGIPTVAMFLSIIAFVFGYPLYRNLNPAGSPFVRLMQVCVAAFRKRNLDMVSDPNVLYQNEELDASICLDGKLLHTKHMKFLDKAAIVTEEDDIKSPNLWRLNTVHRVEELKSVIRMGPIWASGILLITAYAQQGTFSLQQAK*MDRHLTKSFQIPAGSMSVFTMVSMLSTIALYDRIIIPVARKFTGLDRGITFLHRMGIGFVISVLATLVAGFVEMKRKQAALAHGLVDKPHIIIPISVLWLVPQYSLHGIAEAFMSVGHLEFLYDQAPESMRSTATALFWTANSIGNYVSTLLVTLVHKFSAGPNGSNWLPDNNLNKGKLEYFYWLITLLQVVNVIYYFFCAKIYTFKPI*********************
Disordered Region (DISOPRED)
ME************GIITMPFIFANEVCEKLAVVGFHANMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADTYAGRFWTITVASIIYQIGMFSLTLSAILPQLRPPPC******K**DTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETD*K*ATKTWKYFNWYYFVMGAAVLVAVTVLVYIQDNVGWNWGLGIPTVAMFLSIIAFVFGYPLYRNLNPAGSPFVRLMQVCVAAFRKRNLDMVSDPNV********************KHMKFLDKAAI****************TVHRVEELKSVIRMGPIWASGILLITAYAQQGTFSLQQAKSMDRHLTKSFQIPAGSMSVFTMVSMLSTIALYDRIIIPVARKFTGLDRGITFLHRMGIGFVISVLATLVAGFVEMKRKQAALAHGLVDKPHIIIPISVLWLVPQYSLHGIAEAFMSVGHLEFLYDQAPESMRSTATALFWTANSIGNYVSTLLVTLVHKFSAGPNGSNWLPDNNLNKGKLEYFYWLITLLQVVNVIYYFFCAKIYT*************************
Disordered Region (DISEMBL)
**********RKKGGIITMPFIFANEVCEKLAVVGFHANMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADTYAGRFWTITVASIIYQIGMFSLTLSAILPQLRPPPCQGDQVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAVLVAVTVLVYIQDNVGWNWGLGIPTVAMFLSIIAFVFGYPLYRNLNPAGSPFVRLMQVCVAAFRKRNLDMVSDPNVLYQNEELDASICLDGKLLHTKHMKFLDKAAIVTEEDDIKSPNLWRLNTVHRVEELKSVIRMGPIWASGILLITAYAQQGTFSLQQAKSMDRHLTKSFQIPAGSMSVFTMVSMLSTIALYDRIIIPVARKFTGLDRGITFLHRMGIGFVISVLATLVAGFVEMKRKQAALAHGLVDKPHIIIPISVLWLVPQYSLHGIAEAFMSVGHLEFLYDQAPESMRSTATALFWTANSIGNYVSTLLVTLVHKFSAGPNGSNWLPDNNLNKGKLEYFYWLITLLQVVNVIYYFFCAKIYTFKPIQ********************
Disordered Region (DISPRO)
*****GS*****KGGIITMPFIFANEVCEKLAVVGFHANMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADTYAGRFWTITVASIIYQIGMFSLTLSAILPQLRPPPCQGDQVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAVLVAVTVLVYIQDNVGWNWGLGIPTVAMFLSIIAFVFGYPLYRNLNPAGSPFVRLMQVCVAAFRKRNLDMVSDPNVLYQNEELDASICLDGKLLHTKHMKFLDKAAIVTEEDDIKSPNLWRLNTVHRVEELKSVIRMGPIWASGILLITAYAQQGTFSLQQAKSMDRHLTKSFQIPAGSMSVFTMVSMLSTIALYDRIIIPVARKFTGLDRGITFLHRMGIGFVISVLATLVAGFVEMKRKQAALAHGLVDKPHIIIPISVLWLVPQYSLHGIAEAFMSVGHLEFLYDQAPESMRSTATALFWTANSIGNYVSTLLVTLVHKFSAGPNGSNWLPDNNLNKGKLEYFYWLITLLQVVNVIYYFFCAKIYTFKPI*********************
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEEKGGSHVNRKKGGIITMPFIFANEVCEKLAVVGFHANMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADTYAGRFWTITVASIIYQIGMFSLTLSAILPQLRPPPCQGDQVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAVLVAVTVLVYIQDNVGWNWGLGIPTVAMFLSIIAFVFGYPLYRNLNPAGSPFVRLMQVCVAAFRKRNLDMVSDPNVLYQNEELDASICLDGKLLHTKHMKFLDKAAIVTEEDDIKSPNLWRLNTVHRVEELKSVIRMGPIWASGILLITAYAQQGTFSLQQAKSMDRHLTKSFQIPAGSMSVFTMVSMLSTIALYDRIIIPVARKFTGLDRGITFLHRMGIGFVISVLATLVAGFVEMKRKQAALAHGLVDKPHIIIPISVLWLVPQYSLHGIAEAFMSVGHLEFLYDQAPESMRSTATALFWTANSIGNYVSTLLVTLVHKFSAGPNGSNWLPDNNLNKGKLEYFYWLITLLQVVNVIYYFFCAKIYTFKPIQMHQKGGDSSSSEGVELDNKV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	577	2.2.26 [Sep-21-2011]
Q9SX20	596	Probable nitrite transpor	yes	no	0.996	0.964	0.778	0.0
P46032	585	Peptide transporter PTR2	no	no	0.948	0.935	0.468	1e-142
Q9M390	570	Peptide transporter PTR1	no	no	0.934	0.945	0.454	1e-141
Q9LFB8	570	Peptide transporter PTR5	no	no	0.942	0.954	0.451	1e-139
Q93Z20	590	Probable peptide/nitrate	no	no	0.925	0.905	0.447	1e-132
Q8RX77	620	Nitrate transporter 1.7 O	no	no	0.972	0.904	0.405	1e-122
Q84WG0	545	Probable peptide/nitrate	no	no	0.873	0.924	0.419	1e-119
Q8LPL2	591	Probable peptide/nitrate	no	no	0.916	0.895	0.419	1e-118
Q9M9V7	587	Probable peptide/nitrate	no	no	0.946	0.930	0.399	1e-116
Q9M817	607	Probable peptide transpor	no	no	0.942	0.896	0.382	1e-115

>sp|Q9SX20|PTR18_ARATH Probable nitrite transporter At1g68570 OS=Arabidopsis thaliana GN=At1g68570 PE=2 SV=1

 Score =  927 bits (2396), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 451/579 (77%), Positives = 510/579 (88%), Gaps = 4/579 (0%)

Query: 2   EEKGGSHVNRKKGGIITMPFIFANEVCEKLAVVGFHANMISYLTTQLHMPLTKAANTLTN 61
           E++     NR KGG+ITMPFIFANE+CEKLAVVGFHANMISYLTTQLH+PLTKAANTLTN
Sbjct: 13  EKQLHGRPNRPKGGLITMPFIFANEICEKLAVVGFHANMISYLTTQLHLPLTKAANTLTN 72

Query: 62  FGGTGSLTPLIGAFVADTYAGRFWTITVASIIYQIGMFSLTLSAILPQLRPPPCQGDQVC 121
           F GT SLTPL+GAF+AD++AGRFWTIT ASIIYQIGM  LT+SAI+P LRPPPC+G++VC
Sbjct: 73  FAGTSSLTPLLGAFIADSFAGRFWTITFASIIYQIGMTLLTISAIIPTLRPPPCKGEEVC 132

Query: 122 KEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMG 181
             ADT QL+ILY +LLL ALGSGGIRPCVVAFGADQFDE+DP Q TKTW YFNWYYF MG
Sbjct: 133 VVADTAQLSILYVALLLGALGSGGIRPCVVAFGADQFDESDPNQTTKTWNYFNWYYFCMG 192

Query: 182 AAVLVAVTVLVYIQDNVGWNWGLGIPTVAMFLSIIAFVFGYPLYRNLNPAGSPFVRLMQV 241
           AAVL+AVTVLV+IQDNVGW  GLGIPTVAMFLS+IAFV G+ LYR+L PAGSPF RL+QV
Sbjct: 193 AAVLLAVTVLVWIQDNVGWGLGLGIPTVAMFLSVIAFVGGFQLYRHLVPAGSPFTRLIQV 252

Query: 242 CVAAFRKRNLDMVSDPNVLYQNEELDASICLDGKLLHTKHMKFLDKAAIVTEEDDIKS-- 299
            VAAFRKR L MVSDP++LY N+E+DA I L GKL HTKHM FLDKAAIVTEED++K   
Sbjct: 253 GVAAFRKRKLRMVSDPSLLYFNDEIDAPISLGGKLTHTKHMSFLDKAAIVTEEDNLKPGQ 312

Query: 300 -PNLWRLNTVHRVEELKSVIRMGPIWASGILLITAYAQQGTFSLQQAKSMDRHLTKSFQI 358
            PN WRL+TVHRVEELKSVIRMGPI ASGILLITAYAQQGTFSLQQAK+M+RHLT SFQI
Sbjct: 313 IPNHWRLSTVHRVEELKSVIRMGPIGASGILLITAYAQQGTFSLQQAKTMNRHLTNSFQI 372

Query: 359 PAGSMSVFTMVSMLSTIALYDRIIIPVARKFTGLDRGITFLHRMGIGFVISVLATLVAGF 418
           PAGSMSVFT V+ML+TI  YDR+ + VARKFTGL+RGITFLHRMGIGFVIS++ATLVAGF
Sbjct: 373 PAGSMSVFTTVAMLTTIIFYDRVFVKVARKFTGLERGITFLHRMGIGFVISIIATLVAGF 432

Query: 419 VEMKRKQAALAHGLVDKPHIIIPISVLWLVPQYSLHGIAEAFMSVGHLEFLYDQAPESMR 478
           VE+KRK  A+ HGL+DKPH I+PIS LWL+PQY LHG+AEAFMS+GHLEF YDQAPESMR
Sbjct: 433 VEVKRKSVAIEHGLLDKPHTIVPISFLWLIPQYGLHGVAEAFMSIGHLEFFYDQAPESMR 492

Query: 479 STATALFWTANSIGNYVSTLLVTLVHKFSAGPNGSNWLPDNNLNKGKLEYFYWLITLLQV 538
           STATALFW A SIGNYVSTLLVTLVHKFSA P+GSNWLPDNNLN+G+LEYFYWLIT+LQ 
Sbjct: 493 STATALFWMAISIGNYVSTLLVTLVHKFSAKPDGSNWLPDNNLNRGRLEYFYWLITVLQA 552

Query: 539 VNVIYYFFCAKIYTFKPIQMHQKGGDSSS-SEGVELDNK 576
           VN++YY +CAKIYT+KP+Q+H    DSS   E ++L N+
Sbjct: 553 VNLVYYLWCAKIYTYKPVQVHHSKEDSSPVKEELQLSNR 591

May act as an efflux-type nitrite transporter. Not regulated by the PII protein involved in the regulation of nitrite uptake into higher plant chloroplasts.
Arabidopsis thaliana (taxid: 3702)

>sp|P46032|PTR2_ARATH Peptide transporter PTR2 OS=Arabidopsis thaliana GN=PTR2 PE=1 SV=1

 Score =  507 bits (1305), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 259/553 (46%), Positives = 352/553 (63%), Gaps = 6/553 (1%)

Query: 4   KGGSHVNRKKGGIITMPFIFANEVCEKLAVVGFHANMISYLTTQLHMPLTKAANTLTNFG 63
            G   +  K G     PFI  NE CE+LA  G   N+I+YLTT+LH     AA  +T + 
Sbjct: 33  NGNPPLKEKTGNWKACPFILGNECCERLAYYGIAGNLITYLTTKLHQGNVSAATNVTTWQ 92

Query: 64  GTGSLTPLIGAFVADTYAGRFWTITVASIIYQIGMFSLTLSAILPQLRPPPCQGDQVCKE 123
           GT  LTPLIGA +AD Y GR+WTI   S IY IGM +LTLSA +P L+P  C GD  C  
Sbjct: 93  GTCYLTPLIGAVLADAYWGRYWTIACFSGIYFIGMSALTLSASVPALKPAECIGD-FCPS 151

Query: 124 ADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAA 183
           A   Q A+ +  L L ALG+GGI+PCV +FGADQFD+TD ++  +   +FNW+YF +   
Sbjct: 152 ATPAQYAMFFGGLYLIALGTGGIKPCVSSFGADQFDDTDSRERVRKASFFNWFYFSINIG 211

Query: 184 VLVAVTVLVYIQDNVGWNWGLGIPTVAMFLSIIAFVFGYPLYRNLNPAGSPFVRLMQVCV 243
            LV+ ++LV+IQ+N GW  G GIPTV M L+I +F FG PLYR   P GSP  R+ QV V
Sbjct: 212 ALVSSSLLVWIQENRGWGLGFGIPTVFMGLAIASFFFGTPLYRFQKPGGSPITRISQVVV 271

Query: 244 AAFRKRNLDMVSDPNVLYQNEELDASICLDGKLLHTKHMKFLDKAAIVTEEDDIKS--PN 301
           A+FRK ++ +  D  +LY+ ++ +++I    K+ HT   ++LDKAA+++EE+       N
Sbjct: 272 ASFRKSSVKVPEDATLLYETQDKNSAIAGSRKIEHTDDCQYLDKAAVISEEESKSGDYSN 331

Query: 302 LWRLNTVHRVEELKSVIRMGPIWASGILLITAYAQQGTFSLQQAKSMDRHLTKSFQIPAG 361
            WRL TV +VEELK +IRM PIWASGI+    YAQ  T  +QQ ++M+  +  SFQ+P  
Sbjct: 332 SWRLCTVTQVEELKILIRMFPIWASGIIFSAVYAQMSTMFVQQGRAMNCKI-GSFQLPPA 390

Query: 362 SMSVFTMVSMLSTIALYDRIIIPVARKFTGLDRGITFLHRMGIGFVISVLATLVAGFVEM 421
           ++  F   S++  + LYDR I+P+ARKFTG+D+G T + RMGIG  +SVL    A  VE+
Sbjct: 391 ALGTFDTASVIIWVPLYDRFIVPLARKFTGVDKGFTEIQRMGIGLFVSVLCMAAAAIVEI 450

Query: 422 KRKQAALAHGLVDKPHIIIPISVLWLVPQYSLHGIAEAFMSVGHLEFLYDQAPESMRSTA 481
            R   A   GLV+     +PISVLW +PQY + G AE F  +G LEF YDQ+P++MRS  
Sbjct: 451 IRLHMANDLGLVES-GAPVPISVLWQIPQYFILGAAEVFYFIGQLEFFYDQSPDAMRSLC 509

Query: 482 TALFWTANSIGNYVSTLLVTLVHKFSAGPNGSNWLPDNNLNKGKLEYFYWLITLLQVVNV 541
           +AL    N++GNY+S+L++TLV  F+       W+ D NLN G L+YF+WL+  L +VN+
Sbjct: 510 SALALLTNALGNYLSSLILTLVTYFTTRNGQEGWISD-NLNSGHLDYFFWLLAGLSLVNM 568

Query: 542 IYYFFCAKIYTFK 554
             YFF A  Y  K
Sbjct: 569 AVYFFSAARYKQK 581

Peptide transporter. Mediates the transport of di- and tripeptides. High affinity, low capacity transporter. Can also transport histidine.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M390|PTR1_ARATH Peptide transporter PTR1 OS=Arabidopsis thaliana GN=PTR1 PE=2 SV=1

 Score =  501 bits (1290), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 248/546 (45%), Positives = 351/546 (64%), Gaps = 7/546 (1%)

Query: 11  RKKGGIITMPFIFANEVCEKLAVVGFHANMISYLTTQLHMPLTKAANTLTNFGGTGSLTP 70
            K G      FI  NE CE+LA  G   N+++YL ++L+     AAN +TN+ GT  +TP
Sbjct: 23  EKTGNWKACRFILGNECCERLAYYGMGTNLVNYLESRLNQGNATAANNVTNWSGTCYITP 82

Query: 71  LIGAFVADTYAGRFWTITVASIIYQIGMFSLTLSAILPQLRPPPCQGDQVCKEADTGQLA 130
           LIGAF+AD Y GR+WTI     IY  GM  LTLSA +P L+P  C  D      ++ Q A
Sbjct: 83  LIGAFIADAYLGRYWTIATFVFIYVSGMTLLTLSASVPGLKPGNCNADTC--HPNSSQTA 140

Query: 131 ILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAVLVAVTV 190
           + + +L + ALG+GGI+PCV +FGADQFDE D  +  K   +FNW+YF +    L+A TV
Sbjct: 141 VFFVALYMIALGTGGIKPCVSSFGADQFDENDENEKIKKSSFFNWFYFSINVGALIAATV 200

Query: 191 LVYIQDNVGWNWGLGIPTVAMFLSIIAFVFGYPLYRNLNPAGSPFVRLMQVCVAAFRKRN 250
           LV+IQ NVGW WG G+PTVAM +++  F FG   YR   P GSP  R+ QV VAAFRK +
Sbjct: 201 LVWIQMNVGWGWGFGVPTVAMVIAVCFFFFGSRFYRLQRPGGSPLTRIFQVIVAAFRKIS 260

Query: 251 LDMVSDPNVLYQNEELDASICLDGKLLHTKHMKFLDKAAIVTEEDDIKSP--NLWRLNTV 308
           + +  D ++L++  + +++I    KL+HT ++KF DKAA+ ++ D IK    N WRL +V
Sbjct: 261 VKVPEDKSLLFETADDESNIKGSRKLVHTDNLKFFDKAAVESQSDSIKDGEVNPWRLCSV 320

Query: 309 HRVEELKSVIRMGPIWASGILLITAYAQQGTFSLQQAKSMDRHLTKSFQIPAGSMSVFTM 368
            +VEELKS+I + P+WA+GI+  T Y+Q  T  + Q  +MD+H+ K+F+IP+ S+S+F  
Sbjct: 321 TQVEELKSIITLLPVWATGIVFATVYSQMSTMFVLQGNTMDQHMGKNFEIPSASLSLFDT 380

Query: 369 VSMLSTIALYDRIIIPVARKFTGLDRGITFLHRMGIGFVISVLATLVAGFVEMKRKQAAL 428
           VS+L    +YD+ IIP+ARKFT  +RG T L RMGIG V+S+ A + AG +E+ R     
Sbjct: 381 VSVLFWTPVYDQFIIPLARKFTRNERGFTQLQRMGIGLVVSIFAMITAGVLEVVRLDYVK 440

Query: 429 AHGLVDKPHIIIPISVLWLVPQYSLHGIAEAFMSVGHLEFLYDQAPESMRSTATALFWTA 488
            H   D+    I +S+ W +PQY L G AE F  +G LEF YDQAP++MRS  +AL  T 
Sbjct: 441 THNAYDQKQ--IHMSIFWQIPQYLLIGCAEVFTFIGQLEFFYDQAPDAMRSLCSALSLTT 498

Query: 489 NSIGNYVSTLLVTLVHKFSAGPNGSNWLPDNNLNKGKLEYFYWLITLLQVVNVIYYFFCA 548
            ++GNY+ST+LVT+V K +       W+PD NLN+G L+YF++L+  L  +N + Y + +
Sbjct: 499 VALGNYLSTVLVTVVMKITKKNGKPGWIPD-NLNRGHLDYFFYLLATLSFLNFLVYLWIS 557

Query: 549 KIYTFK 554
           K Y +K
Sbjct: 558 KRYKYK 563

Peptide transporter. Mediates the transport of di- and tripeptides. High affinity transporter with low selectivity. No transport of amino acids.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LFB8|PTR5_ARATH Peptide transporter PTR5 OS=Arabidopsis thaliana GN=PTR5 PE=2 SV=1

 Score =  494 bits (1273), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 249/552 (45%), Positives = 353/552 (63%), Gaps = 8/552 (1%)

Query: 10  NRKKGGIITMPFIFANEVCEKLAVVGFHANMISYLTTQLHMPLTKAANTLTNFGGTGSLT 69
             K G      FI   E CE+LA  G   N+I+YL  Q++M    A+ +++N+ GT   T
Sbjct: 23  KNKTGTWKACRFILGTECCERLAYYGMSTNLINYLEKQMNMENVSASKSVSNWSGTCYAT 82

Query: 70  PLIGAFVADTYAGRFWTITVASIIYQIGMFSLTLSAILPQLRPPPCQGDQVCKEADTGQL 129
           PLIGAF+AD Y GR+WTI    +IY  GM  LT+SA +P L  P C G+     A  GQ 
Sbjct: 83  PLIGAFIADAYLGRYWTIASFVVIYIAGMTLLTISASVPGL-TPTCSGETC--HATAGQT 139

Query: 130 AILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAVLVAVT 189
           AI + +L L ALG+GGI+PCV +FGADQFD+TD K+      +FNW+YFV+    ++A +
Sbjct: 140 AITFIALYLIALGTGGIKPCVSSFGADQFDDTDEKEKESKSSFFNWFYFVINVGAMIASS 199

Query: 190 VLVYIQDNVGWNWGLGIPTVAMFLSIIAFVFGYPLYRNLNPAGSPFVRLMQVCVAAFRKR 249
           VLV+IQ NVGW WGLG+PTVAM ++++ F  G   YR   P GSP  R++QV VA+ RK 
Sbjct: 200 VLVWIQMNVGWGWGLGVPTVAMAIAVVFFFAGSNFYRLQKPGGSPLTRMLQVIVASCRKS 259

Query: 250 NLDMVSDPNVLYQNEELDASICLDGKLLHTKHMKFLDKAAIVTEEDD--IKSPNLWRLNT 307
            + +  D ++LY+N++ ++SI    KL HTK + F DKAA+ TE D+      + W+L T
Sbjct: 260 KVKIPEDESLLYENQDAESSIIGSRKLEHTKILTFFDKAAVETESDNKGAAKSSSWKLCT 319

Query: 308 VHRVEELKSVIRMGPIWASGILLITAYAQQGTFSLQQAKSMDRHLTKSFQIPAGSMSVFT 367
           V +VEELK++IR+ PIWA+GI+  + Y+Q GT  + Q  ++D+H+  +F+IP+ S+S+F 
Sbjct: 320 VTQVEELKALIRLLPIWATGIVFASVYSQMGTVFVLQGNTLDQHMGPNFKIPSASLSLFD 379

Query: 368 MVSMLSTIALYDRIIIPVARKFTGLDRGITFLHRMGIGFVISVLATLVAGFVEMKRKQAA 427
            +S+L    +YD++I+P ARK+TG +RG T L R+GIG VIS+ + + AG +E+ R    
Sbjct: 380 TLSVLFWAPVYDKLIVPFARKYTGHERGFTQLQRIGIGLVISIFSMVSAGILEVARLNYV 439

Query: 428 LAHGLVDKPHIIIPISVLWLVPQYSLHGIAEAFMSVGHLEFLYDQAPESMRSTATALFWT 487
             H L ++    IP+++ W VPQY L G AE F  +G LEF YDQAP++MRS  +AL  T
Sbjct: 440 QTHNLYNEE--TIPMTIFWQVPQYFLVGCAEVFTFIGQLEFFYDQAPDAMRSLCSALSLT 497

Query: 488 ANSIGNYVSTLLVTLVHKFSAGPNGSNWLPDNNLNKGKLEYFYWLITLLQVVNVIYYFFC 547
           A + GNY+ST LVTLV K +       W+   NLN G L+YF+WL+  L  +N + Y + 
Sbjct: 498 AIAFGNYLSTFLVTLVTKVTRSGGRPGWIA-KNLNNGHLDYFFWLLAGLSFLNFLVYLWI 556

Query: 548 AKIYTFKPIQMH 559
           AK YT+K    H
Sbjct: 557 AKWYTYKKTTGH 568

Peptide transporter. Mediates the transport of di- and tripeptides. High affinity transporter. Involved in the uptake of peptides during pollen germination and tube growth.

Arabidopsis thaliana (taxid: 3702)

>sp|Q93Z20|PTR17_ARATH Probable peptide/nitrate transporter At1g62200 OS=Arabidopsis thaliana GN=At1g62200 PE=2 SV=1

 Score =  471 bits (1212), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 246/550 (44%), Positives = 346/550 (62%), Gaps = 16/550 (2%)

Query: 5   GGSHVNRKKGGIITMPFIFANEVCEKLAVVGFHANMISYLTTQLHMPLTKAANTLTNFGG 64
           G     +K G     PFI  NE CE+LA  G   N+I+Y T++LH     AA+ +  + G
Sbjct: 45  GNPPSKKKTGNWKACPFILGNECCERLAYYGIAKNLITYYTSELHESNVSAASDVMIWQG 104

Query: 65  TGSLTPLIGAFVADTYAGRFWTITVASIIYQIGMFSLTLSAILPQLRPPPCQGDQ--VCK 122
           T  +TPLIGA +AD+Y GR+WTI   S IY IGM  LTLSA LP L+P  C G    +C 
Sbjct: 105 TCYITPLIGAVIADSYWGRYWTIASFSAIYFIGMALLTLSASLPVLKPAACAGVAAALCS 164

Query: 123 EADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGA 182
            A T Q A+ +  L L ALG+GGI+PCV +FGADQFD+TDP++  +   +FNW+YF +  
Sbjct: 165 PATTVQYAVFFTGLYLIALGTGGIKPCVSSFGADQFDDTDPRERVRKASFFNWFYFSINI 224

Query: 183 AVLVAVTVLVYIQDNVGWNWGLGIPTVAMFLSIIAFVFGYPLYRNLNPAGSPFVRLMQVC 242
              ++ T+LV++Q+NVGW  G  IPTV M +SI +F  G PLYR   P GSP  R+ QV 
Sbjct: 225 GSFISSTLLVWVQENVGWGLGFLIPTVFMGVSIASFFIGTPLYRFQKPGGSPITRVCQVL 284

Query: 243 VAAFRKRNLDMVSDPNVLYQNEELDASICLDGKLLHTKHMKFLDKAAIVTEEDDIKS--P 300
           VAA+RK  L++  D + LY+  E ++ I    K+ HT   KFLDKAA+++E +       
Sbjct: 285 VAAYRKLKLNLPEDISFLYETREKNSMIAGSRKIQHTDGYKFLDKAAVISEYESKSGAFS 344

Query: 301 NLWRLNTVHRVEELKSVIRMGPIWASGILLITAYAQQGTFSLQQAKSMDRHLTKSFQIPA 360
           N W+L TV +VEE+K++IRM PIWASGI+    Y+Q  T  +QQ +SM+R + +SF+IP 
Sbjct: 345 NPWKLCTVTQVEEVKTLIRMFPIWASGIVYSVLYSQISTLFVQQGRSMNR-IIRSFEIPP 403

Query: 361 GSMSVFTMVSMLSTIALYDRIIIPVARKFTGLDRGITFLHRMGIGFVISVLATLVAGFVE 420
            S  VF  + +L +I +YDR ++P  R+FTG+ +G+T L RMGIG  +SVL+   A  VE
Sbjct: 404 ASFGVFDTLIVLISIPIYDRFLVPFVRRFTGIPKGLTDLQRMGIGLFLSVLSIAAAAIVE 463

Query: 421 MKRKQAALAHGLVDKPHIIIPISVLWLVPQYSLHGIAEAFMSVGHLEFLYDQAPESMRST 480
             R Q A            + +S+ W +PQY L GIAE F  +G +EF YD++P++MRS 
Sbjct: 464 TVRLQLA---------QDFVAMSIFWQIPQYILMGIAEVFFFIGRVEFFYDESPDAMRSV 514

Query: 481 ATALFWTANSIGNYVSTLLVTLVHKFSAGPNGSNWLPDNNLNKGKLEYFYWLITLLQVVN 540
            +AL     ++G+Y+S+L++TLV  F+A      W+PD +LNKG L+YF+WL+  L +VN
Sbjct: 515 CSALALLNTAVGSYLSSLILTLVAYFTALGGKDGWVPD-DLNKGHLDYFFWLLVSLGLVN 573

Query: 541 V-IYYFFCAK 549
           + +Y   C K
Sbjct: 574 IPVYALICVK 583

Arabidopsis thaliana (taxid: 3702)

>sp|Q8RX77|PTR21_ARATH Nitrate transporter 1.7 OS=Arabidopsis thaliana GN=NRT1.7 PE=1 SV=1

 Score =  439 bits (1128), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 235/580 (40%), Positives = 344/580 (59%), Gaps = 19/580 (3%)

Query: 7   SHVNRKKGGIITMPFIFANEVCEKLAVVGFHANMISYLTTQLHMPLTKAANTLTNFGGTG 66
             V +K GG   + FI  NE  E+L  +G  AN + YLT   H+    AAN +  + G  
Sbjct: 46  EKVEKKPGGWRAVSFILGNETLERLGSIGLLANFMVYLTKVFHLEQVDAANVINIWSGFT 105

Query: 67  SLTPLIGAFVADTYAGRFWTITVASIIYQIGMFSLTLSAILPQLRPPPC--QGDQVCKEA 124
           +LTPL+GA+++DTY GRF TI  AS    +G+ ++TL+A  PQL P  C  Q    C   
Sbjct: 106 NLTPLVGAYISDTYVGRFKTIAFASFATLLGLITITLTASFPQLHPASCNSQDPLSCGGP 165

Query: 125 DTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAV 184
           +  Q+ +L   L   ++GSGGIRPC + FG DQFD+   +       +FNWYY      +
Sbjct: 166 NKLQIGVLLLGLCFLSVGSGGIRPCSIPFGVDQFDQRTEEGVKGVASFFNWYYMTFTVVL 225

Query: 185 LVAVTVLVYIQDNVGWNWGLGIPTVAMFLSIIAFVFGYPLYRNLNPAGSPFVRLMQVCVA 244
           ++  TV+VYIQD V W  G  IPT  M L+++ F  G   Y  + P GS F  + QV VA
Sbjct: 226 IITQTVVVYIQDQVSWIIGFSIPTGLMALAVVMFFAGMKRYVYVKPEGSIFSGIAQVIVA 285

Query: 245 AFRKRNLDMVS--DPNVLYQNEELDASICLDGKLLHTKHMKFLDKAAIVTEED---DIKS 299
           A +KR L + +  D  V Y +  + +S+    KL  +   + LDKAA+V E D   +   
Sbjct: 286 ARKKRKLKLPAEDDGTVTYYDPAIKSSVL--SKLHRSNQFRCLDKAAVVIEGDLTPEGPP 343

Query: 300 PNLWRLNTVHRVEELKSVIRMGPIWASGILLITAYAQQGTFSLQQAKSMDRHLTKSFQIP 359
            + WRL +V  VEE+K +IR+ PIW++GI+ + A   QGTF++ QA  MDR+L   F+IP
Sbjct: 344 ADKWRLCSVQEVEEVKCLIRIVPIWSAGIISLAAMTTQGTFTVSQALKMDRNLGPKFEIP 403

Query: 360 AGSMSVFTMVSMLSTIALYDRIIIPVARKFTGLDRGITFLHRMGIGFVISVLATLVAGFV 419
           AGS+SV +++++   +  YDR+ +P  R+ TG   GIT L R+G G V ++ + +VAG V
Sbjct: 404 AGSLSVISLLTIGIFLPFYDRVFVPFMRRITGHKSGITLLQRIGTGIVFAIFSMIVAGIV 463

Query: 420 EMKRKQAALAHGLVDKPHIIIPISVLWLVPQYSLHGIAEAFMSVGHLEFLYDQAPESMRS 479
           E  R+  ++  G    P  + P+SV WL PQ  L G+ EAF  +G +EF   Q PE MRS
Sbjct: 464 ERMRRIRSINAG---DPTGMTPMSVFWLSPQLILMGLCEAFNIIGQIEFFNSQFPEHMRS 520

Query: 480 TATALFWTANSIGNYVSTLLVTLVHKFSAGPNGSNWLPDNNLNKGKLEYFYWLITLLQVV 539
            A +LF  + +  +Y+S+ LVT+VHKFS G +  +WL + NLN GKL+YFY+LI +L VV
Sbjct: 521 IANSLFSLSFAGSSYLSSFLVTVVHKFSGGHDRPDWL-NKNLNAGKLDYFYYLIAVLGVV 579

Query: 540 NVIYYFFCAKIYTFK---PIQMHQKGGDSSSSEGVELDNK 576
           N++Y+++CA+ Y +K   PI+  +   +  SS+ VE+ +K
Sbjct: 580 NLVYFWYCARGYRYKVGLPIEDFE---EDKSSDDVEMTSK 616

Low-affinity proton-dependent nitrate transporter. Not involved in dipeptides transport. Involved in phloem loading and nitrate remobilization from the older leaves to other tissues.

Arabidopsis thaliana (taxid: 3702)

>sp|Q84WG0|PTR26_ARATH Probable peptide/nitrate transporter At2g02020 OS=Arabidopsis thaliana GN=At2g02020 PE=2 SV=2

 Score =  429 bits (1103), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 229/546 (41%), Positives = 320/546 (58%), Gaps = 42/546 (7%)

Query: 5   GGSHVNRKKGGIITMPFIFANEVCEKLAVVGFHANMISYLTTQLHMPLTKAANTLTNFGG 64
           G   + +  G     PFIFANE CE+LA  G   N+I+Y T +LH     AA  +  + G
Sbjct: 35  GNPPLKQTTGNWKACPFIFANECCERLAYYGIAKNLITYFTNELHETNVSAARHVMTWQG 94

Query: 65  TGSLTPLIGAFVADTYAGRFWTITVASIIYQIGMFSLTLSAILPQLRPPPCQGDQVCKEA 124
           T  +TPLIGA +AD Y GR+WTI   S IY  GM +LTLSA +P L+P  C G  +C  A
Sbjct: 95  TCYITPLIGALIADAYWGRYWTIACFSAIYFTGMVALTLSASVPGLKPAECIGS-LCPPA 153

Query: 125 DTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAV 184
              Q  +L++ L L ALG+GGI+PCV +FGADQFD+TDP +  +   +FNW+YF +    
Sbjct: 154 TMVQSTVLFSGLYLIALGTGGIKPCVSSFGADQFDKTDPSERVRKASFFNWFYFTINIGA 213

Query: 185 LVAVTVLVYIQDNVGWNWGLGIPTVAMFLSIIAFVFGYPLYRNLNPAGSPFVRLMQVCVA 244
            V+ TVLV+IQ+N GW  G  IPTV M L+ ++F FG PLYR   P GSP   + QV VA
Sbjct: 214 FVSSTVLVWIQENYGWELGFLIPTVFMGLATMSFFFGTPLYRFQKPRGSPITSVCQVLVA 273

Query: 245 AFRKRNLDMVSDPNVLYQNEELDASICLDGKLLHTKHMKFLDKAAIVTEEDDIKSPNLWR 304
           A+RK NL +  D                                   T+E D  + N W+
Sbjct: 274 AYRKSNLKVPEDS----------------------------------TDEGDANT-NPWK 298

Query: 305 LNTVHRVEELKSVIRMGPIWASGILLITAYAQQGTFSLQQAKSMDRHLTKSFQIPAGSMS 364
           L TV +VEE+K ++R+ PIWASGI+    ++Q  T  +QQ + M R +   F+IP  ++ 
Sbjct: 299 LCTVTQVEEVKILLRLVPIWASGIIFSVLHSQIYTLFVQQGRCMKRTI-GLFEIPPATLG 357

Query: 365 VFTMVSMLSTIALYDRIIIPVARKFTGLDRGITFLHRMGIGFVISVLATLVAGFVEMKRK 424
           +F   S+L ++ +YDR+I+P+ R+FTGL +G T L RMGIG  +SVL+   A  VE  R 
Sbjct: 358 MFDTASVLISVPIYDRVIVPLVRRFTGLAKGFTELQRMGIGLFVSVLSLTFAAIVETVRL 417

Query: 425 QAALAHGLVDKPHIIIPISVLWLVPQYSLHGIAEAFMSVGHLEFLYDQAPESMRSTATAL 484
           Q A    LV+    I+P+++ W +PQY L G A  F  VG +EF Y+Q+P+SMRS  +A 
Sbjct: 418 QLARDLDLVESGD-IVPLNIFWQIPQYFLMGTAGVFFFVGRIEFFYEQSPDSMRSLCSAW 476

Query: 485 FWTANSIGNYVSTLLVTLVHKFSAGPNGSNWLPDNNLNKGKLEYFYWLITLLQVVNV-IY 543
                ++GNY+S+L++TLV   S       W+P +N+N G L+YF+WL+  L  VN+ ++
Sbjct: 477 ALLTTTLGNYLSSLIITLVAYLSG---KDCWIPSDNINNGHLDYFFWLLVSLGSVNIPVF 533

Query: 544 YFFCAK 549
            FF  K
Sbjct: 534 VFFSVK 539

Arabidopsis thaliana (taxid: 3702)

>sp|Q8LPL2|PTR32_ARATH Probable peptide/nitrate transporter At3g16180 OS=Arabidopsis thaliana GN=At3g16180 PE=2 SV=2

 Score =  426 bits (1095), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 233/556 (41%), Positives = 336/556 (60%), Gaps = 27/556 (4%)

Query: 11  RKKGGIITMPFIFANEVCEKLAVVGFHANMISYLTTQLHMPLTKAANTLTNFGGTGSLTP 70
           R KGG++TMPFI ANE  EK+A  G   NMI YL +   + L K    L  +    +  P
Sbjct: 22  RTKGGLLTMPFIIANEGFEKVASYGLLQNMILYLMSDYRLGLVKGQTVLFMWVAATNFMP 81

Query: 71  LIGAFVADTYAGRFWTITVASIIYQIGMFSLTLSAILPQLRPPPC--QGDQVCKEADTGQ 128
           L+GAF++D+Y GRF TI +AS+   +GM  L L+A+LPQ++P PC       C  A + Q
Sbjct: 82  LVGAFLSDSYLGRFLTIVIASLSSLLGMVVLWLTAMLPQVKPSPCVATAGTNCSSATSSQ 141

Query: 129 LAILYASLLLAALGSGGIRPCVVAFGADQFD-ETDPKQATKTWKYFNWYYFVMGAAVLVA 187
           LA+LY +  L ++GSGGIRPC +AFGADQ D + +PK       +F WYY     AVL+A
Sbjct: 142 LALLYTAFALISIGSGGIRPCSLAFGADQLDNKENPKNERVLESFFGWYYASSSVAVLIA 201

Query: 188 VTVLVYIQDNVGWNWGLGIPTVAMFLSIIAFVFGYPLYRNLNPAGSPFVRLMQVCVAAFR 247
            TV+VYIQD++GW  G GIP + M L+   FVF  PLY   + + S F  L QV  AA+ 
Sbjct: 202 FTVIVYIQDHLGWKIGFGIPAILMLLAGFLFVFASPLYVKRDVSKSLFTGLAQVVAAAYV 261

Query: 248 KRNLDMVS--DPNVLY---QNEELDASICLDGKLLHTKHMKFLDKA-AIVTEEDDIKSP- 300
           KRNL +    D    Y   ++ EL A          +  ++FL+KA AI   ++D+ S  
Sbjct: 262 KRNLTLPDHHDSRDCYYRLKDSELKAP---------SDKLRFLNKACAISNRDEDLGSDG 312

Query: 301 ---NLWRLNTVHRVEELKSVIRMGPIWASGILLITAYAQQGTFSLQQAKSMDRHLTK--S 355
              N WRL T  +VE+LK+++++ P+W++GI++ +    Q +F L QAKSMDR L+   +
Sbjct: 313 LALNQWRLCTTDQVEKLKALVKVIPVWSTGIMM-SINVSQNSFQLLQAKSMDRRLSSNST 371

Query: 356 FQIPAGSMSVFTMVSMLSTIALYDRIIIPVARKFTGLDRGITFLHRMGIGFVISVLATLV 415
           FQIPAGS  +FT+++++S + LYDR I+P+A K  G    +    RMG+G  IS LA  V
Sbjct: 372 FQIPAGSFGMFTIIALISWVVLYDRAILPLASKIRGRPVRVNVKIRMGLGLFISFLAMAV 431

Query: 416 AGFVEMKRKQAALAHGLVDKPHIIIPISVLWLVPQYSLHGIAEAFMSVGHLEFLYDQAPE 475
           +  VE  R++ A++ GL +  +  + IS +WLVPQY LHG+AEA   +G  EF Y + P+
Sbjct: 432 SATVEHYRRKTAISQGLANDANSTVSISAMWLVPQYVLHGLAEALTGIGQTEFFYTEFPK 491

Query: 476 SMRSTATALFWTANSIGNYVSTLLVTLVHKFSAGPNGSNWLPDNNLNKGKLEYFYWLITL 535
           SM S A +LF    ++ N ++++++  V   S   N S W+ D N+NKG  +Y+YW++ +
Sbjct: 492 SMSSIAASLFGLGMAVANILASVILNAVKNSSKQGNVS-WIED-NINKGHYDYYYWVLAI 549

Query: 536 LQVVNVIYYFFCAKIY 551
           L  VNVIYY  C+  Y
Sbjct: 550 LSFVNVIYYVVCSWSY 565

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M9V7|PTR8_ARATH Probable peptide/nitrate transporter At1g18880 OS=Arabidopsis thaliana GN=At1g18880 PE=2 SV=1

 Score =  419 bits (1077), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 224/561 (39%), Positives = 335/561 (59%), Gaps = 15/561 (2%)

Query: 19  MPFIFANEVCEKLAVVGFHANMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVAD 78
           MPFI  NE  EKL +VG  +N++ YLTT  +M    AA  +  +GGT +   ++ AF+ D
Sbjct: 26  MPFIIGNETFEKLGIVGSSSNLVIYLTTVFNMKSITAAKVVNIYGGTSNFGTIVAAFLCD 85

Query: 79  TYAGRFWTITVASIIYQIGMFSLTLSAILPQLRPPPCQGD--QVCKEADTGQLAILYASL 136
           +Y GR+ T++ A I   +G  ++ L+A++  L P  C  +   VC     GQ+  L  ++
Sbjct: 86  SYFGRYKTLSFAMIACFLGSVAMDLTAVIHPLHPAQCAKEIGSVCNGPSIGQIMFLAGAM 145

Query: 137 LLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAVLVAVTVLVYIQD 196
           +L  +G+GGIRPC + FGADQFD    +       +FNWY+F    A +V++T++VY+Q 
Sbjct: 146 VLLVIGAGGIRPCNLPFGADQFDPKTKEGKRGIESFFNWYFFTFTFAQMVSLTLIVYVQS 205

Query: 197 NVGWNWGLGIPTVAMFLSIIAFVFGYPLYRNLNPAGSPFVRLMQVCVAAFRKRNLDMVSD 256
           NV W+ GL IP + M L  I F  G  LY  +  +GSP   + +V V A +KR L  V  
Sbjct: 206 NVSWSIGLAIPAILMLLGCIIFFAGSKLYVKVKASGSPIHSITRVIVVAIKKRRLKPVG- 264

Query: 257 PNVLYQNEELDASICLDGKLLHTKHMKFLDKAAIVTEEDDIK---SP-NLWRLNTVHRVE 312
           PN LY      AS   + KL HT+  +FLDK+AI T++D +    SP + W+L ++ +VE
Sbjct: 265 PNELYN---YIASDFKNSKLGHTEQFRFLDKSAIQTQDDKLNKDGSPVDAWKLCSMQQVE 321

Query: 313 ELKSVIRMGPIWASGILLITAYAQQGTFSLQQAKSMDRHLTK-SFQIPAGSMSVFTMVSM 371
           E+K VIR+ P+W S  L   AY QQ T+++ Q+   DR L   SFQIPAGS +VF M+ M
Sbjct: 322 EVKCVIRVLPVWLSAALFYLAYIQQTTYTIFQSLQSDRRLGPGSFQIPAGSYTVFLMLGM 381

Query: 372 LSTIALYDRIIIPVARKFTGLDRGITFLHRMGIGFVISVLATLVAGFVEMKRKQAALAH- 430
              I +YDR+++P  RK+TG D GIT L R+G G  + + + +V+  VE  R++ AL   
Sbjct: 382 TIFIPIYDRVLVPFLRKYTGRDGGITQLQRVGAGLFLCITSMMVSAIVEQYRRKVALTKP 441

Query: 431 --GLVDKPHIIIPISVLWLVPQYSLHGIAEAFMSVGHLEFLYDQAPESMRSTATALFWTA 488
             GL  +   I  +S +WL+PQ  L GIA+A   VG +EF Y Q PE+MRS A +L++  
Sbjct: 442 TLGLAPRKGAISSMSGMWLIPQLVLMGIADALAGVGQMEFYYKQFPENMRSFAGSLYYCG 501

Query: 489 NSIGNYVSTLLVTLVHKFSAGPNGSNWLPDNNLNKGKLEYFYWLITLLQVVNVIYYFFCA 548
             + +Y+ST L++ VH  + G +G +WLP+ +LNKG+LEYFY+L+  +  +N+ Y+   +
Sbjct: 502 IGLASYLSTFLLSAVHDTTEGFSGGSWLPE-DLNKGRLEYFYFLVAGMMTLNLAYFLLVS 560

Query: 549 KIYTFKPIQMHQKGGDSSSSE 569
             Y +K +    K  D +S+E
Sbjct: 561 HWYRYKDVVAKDKDMDKTSAE 581

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M817|PTR6_ARATH Probable peptide transporter At1g52190 OS=Arabidopsis thaliana GN=At1g52190 PE=1 SV=1

 Score =  416 bits (1070), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 217/568 (38%), Positives = 343/568 (60%), Gaps = 24/568 (4%)

Query: 10  NRKKGGIITMPFIFANEVCEKLAVVGFHANMISYLTTQLHMPLTKAANTLTNFGGTGSLT 69
            + KGGIITMPFI ANE  EK+A  G   NMI YL       + K  N L  +    + T
Sbjct: 19  KKTKGGIITMPFIIANEAFEKVASYGLLPNMIMYLIRDYRFGVAKGTNVLFMWSAASNFT 78

Query: 70  PLIGAFVADTYAGRFWTITVASIIYQIGMFSLTLSAILPQLRPPPCQ---GDQVCKEADT 126
           PL+GAF++D+Y GRF TI++AS+   +GM  L L+A+LPQ++P PC        C  +  
Sbjct: 79  PLLGAFLSDSYLGRFLTISIASLSSFLGMVLLWLTAMLPQVKPSPCDPTAAGSHCGSSTA 138

Query: 127 GQLAILYASLLLAALGSGGIRPCVVAFGADQFD-ETDPKQATKTWKYFNWYYFVMGAAVL 185
            QLA+LY++  L ++GSGGIRPC +AFGADQ D + +PK       +F WYY     AVL
Sbjct: 139 SQLALLYSAFALISIGSGGIRPCSLAFGADQLDNKENPKNERVLESFFGWYYASSAVAVL 198

Query: 186 VAVTVLVYIQDNVGWNWGLGIPTVAMFLSIIAFVFGYPLYRNLNPAGSPFVRLMQVCVAA 245
           +A T +VYIQ+++GW  G G+P V M ++ + F+   PLY       S F  L Q  VAA
Sbjct: 199 IAFTGIVYIQEHLGWKIGFGVPAVLMLIAALLFILASPLYVTRGVTKSLFTGLAQAIVAA 258

Query: 246 FRKRNLDMVSDPNVLYQNEELDASICLDGKLLH--TKHMKFLDKAAIVT-EEDDIKSP-- 300
           ++KR L +   P+    ++  D    +    +   ++ ++FL+KA +++  E++I S   
Sbjct: 259 YKKRKLSL---PD---HHDSFDCYYHMKDSEIKAPSQKLRFLNKACLISNREEEIGSDGF 312

Query: 301 --NLWRLNTVHRVEELKSVIRMGPIWASGILLITAYAQQGTFSLQQAKSMDRHLTK---S 355
             N WRL T  +VEELK++I++ PIW++GI++ +    Q +F L QA SMDR L++   S
Sbjct: 313 ALNPWRLCTTDKVEELKALIKVIPIWSTGIMM-SINTSQSSFQLLQATSMDRRLSRHGSS 371

Query: 356 FQIPAGSMSVFTMVSMLSTIALYDRIIIPVARKFTGLDRGITFLHRMGIGFVISVLATLV 415
           FQ+PAGS  +FT++++   + LYDR +IP+A K  G    ++   RMG+G  +S LA  +
Sbjct: 372 FQVPAGSFGMFTIIALALWVILYDRAVIPLASKIRGRPFRLSVKLRMGLGLFMSFLAMAI 431

Query: 416 AGFVEMKRKQAALAHGLVDKPHIIIPISVLWLVPQYSLHGIAEAFMSVGHLEFLYDQAPE 475
           +  VE  R++ A++ G  +  + ++ IS +WLVPQY LHG+AEA  ++G  EF Y + P+
Sbjct: 432 SAMVESFRRKKAISQGYANNSNAVVDISAMWLVPQYVLHGLAEALTAIGQTEFFYTEFPK 491

Query: 476 SMRSTATALFWTANSIGNYVSTLLVTLVHKFSAGPNGSNWLPDNNLNKGKLEYFYWLITL 535
           SM S A +LF    ++ + ++++++  V++ ++     +W+ D N+NKG   Y+YW++ +
Sbjct: 492 SMSSIAASLFGLGMAVASLLASVVLNAVNELTSRNGKESWVSD-NINKGHYNYYYWVLAI 550

Query: 536 LQVVNVIYYFFCAKIYTFKPIQMHQKGG 563
           +  +NVIYY  C+  +++ P+    + G
Sbjct: 551 MSFINVIYYVICS--WSYGPLVDQVRNG 576

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	577
297737830	795	unnamed protein product [Vitis vinifera]	0.996	0.723	0.796	0.0
359472693	672	PREDICTED: probable nitrite transporter	0.996	0.855	0.796	0.0
356495939	576	PREDICTED: probable nitrite transporter	0.998	1.0	0.798	0.0
357488469	584	Peptide transporter PTR [Medicago trunca	0.989	0.977	0.782	0.0
15221439	596	putative nitrite transporter [Arabidopsi	0.996	0.964	0.778	0.0
356498272	576	PREDICTED: probable nitrite transporter	0.998	1.0	0.769	0.0
297838617	597	proton-dependent oligopeptide transport	0.996	0.963	0.770	0.0
312281607	598	unnamed protein product [Thellungiella h	0.996	0.961	0.784	0.0
449465908	584	PREDICTED: probable nitrite transporter	0.996	0.984	0.716	0.0
449514761	575	PREDICTED: probable nitrite transporter	0.986	0.989	0.718	0.0

>gi|297737830|emb|CBI27031.3| unnamed protein product [Vitis vinifera]

 Score =  977 bits (2525), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 461/579 (79%), Positives = 517/579 (89%), Gaps = 4/579 (0%)

Query: 3   EKGGSHVNRKKGGIITMPFIFANEVCEKLAVVGFHANMISYLTTQLHMPLTKAANTLTNF 62
           EK GSH  R KGG+ITMPFIFANE CEKLAVVGF ANMI+YLT QLH+PLTKAANT+TNF
Sbjct: 2   EKKGSHGGRTKGGLITMPFIFANEACEKLAVVGFSANMITYLTQQLHLPLTKAANTITNF 61

Query: 63  GGTGSLTPLIGAFVADTYAGRFWTITVASIIYQIGMFSLTLSAILPQLRPPPCQGD-QVC 121
            GT SLTPL+GAF++D YAGRFWTITVASI++Q+GM SLTLSA+LPQLRPPPC+G+ QVC
Sbjct: 62  SGTASLTPLLGAFISDAYAGRFWTITVASILWQMGMTSLTLSAVLPQLRPPPCKGEHQVC 121

Query: 122 KEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMG 181
           +EAD GQLAILY SLLL ALG+GGIRPCVVAFGADQFDETDPK+ TKTW +FNWYYFVMG
Sbjct: 122 QEADGGQLAILYGSLLLTALGAGGIRPCVVAFGADQFDETDPKEKTKTWNFFNWYYFVMG 181

Query: 182 AAVLVAVTVLVYIQDNVGWNWGLGIPTVAMFLSIIAFVFGYPLYRNLNPAGSPFVRLMQV 241
           A++LVAVTVLVYIQDNVGW WGLGIPT AMFLSII FV GYPLYRNL+P GSPF RL+QV
Sbjct: 182 ASILVAVTVLVYIQDNVGWGWGLGIPTTAMFLSIITFVVGYPLYRNLDPVGSPFTRLLQV 241

Query: 242 CVAAFRKRNLDMVSDPNVLYQNEELDASICLDGKLLHTKHMKFLDKAAIVTEEDDIKS-- 299
           CVAA +KRNL MVSDPN+LY+N+ELDASI   GKLLHT  +KFLDKAAIVTEEDDIKS  
Sbjct: 242 CVAASKKRNLRMVSDPNLLYENDELDASISAAGKLLHTNELKFLDKAAIVTEEDDIKSSQ 301

Query: 300 -PNLWRLNTVHRVEELKSVIRMGPIWASGILLITAYAQQGTFSLQQAKSMDRHLTKSFQI 358
            PNLWRLNTVHRVEELKSVIRMGPIWASGILLITAYAQQGTFSLQQA++MDR L  SFQI
Sbjct: 302 APNLWRLNTVHRVEELKSVIRMGPIWASGILLITAYAQQGTFSLQQARTMDRRLINSFQI 361

Query: 359 PAGSMSVFTMVSMLSTIALYDRIIIPVARKFTGLDRGITFLHRMGIGFVISVLATLVAGF 418
           P GSM+VF+M SML TIALYDR++I VAR+FTGLDRGITFL RM IGFVIS++ATLVAGF
Sbjct: 362 PPGSMTVFSMSSMLITIALYDRLLIRVARRFTGLDRGITFLQRMWIGFVISIVATLVAGF 421

Query: 419 VEMKRKQAALAHGLVDKPHIIIPISVLWLVPQYSLHGIAEAFMSVGHLEFLYDQAPESMR 478
           VE+KRKQAA A+GLV+ P   IPISVLWLVPQYSLHGIAEAFMS+GHLEF YDQAPESM+
Sbjct: 422 VEVKRKQAASAYGLVNSPKSTIPISVLWLVPQYSLHGIAEAFMSIGHLEFFYDQAPESMK 481

Query: 479 STATALFWTANSIGNYVSTLLVTLVHKFSAGPNGSNWLPDNNLNKGKLEYFYWLITLLQV 538
           ST +ALFWTA + GN+VST LV+LVHK+SAGP+GSNWLPD+NLNKGKLE FYWL+TLLQV
Sbjct: 482 STGSALFWTAIAFGNFVSTFLVSLVHKYSAGPDGSNWLPDDNLNKGKLEKFYWLLTLLQV 541

Query: 539 VNVIYYFFCAKIYTFKPIQMHQKGGDSSSSEGVELDNKV 577
           VN+IYY FCAK YTFKPIQ+  K  D+S  +G++L ++V
Sbjct: 542 VNLIYYSFCAKFYTFKPIQIRMKEVDTSEEDGIQLTSRV 580

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359472693|ref|XP_002282337.2| PREDICTED: probable nitrite transporter At1g68570 [Vitis vinifera]

 Score =  969 bits (2506), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 461/579 (79%), Positives = 517/579 (89%), Gaps = 4/579 (0%)

Query: 3   EKGGSHVNRKKGGIITMPFIFANEVCEKLAVVGFHANMISYLTTQLHMPLTKAANTLTNF 62
           EK GSH  R KGG+ITMPFIFANE CEKLAVVGF ANMI+YLT QLH+PLTKAANT+TNF
Sbjct: 94  EKKGSHGGRTKGGLITMPFIFANEACEKLAVVGFSANMITYLTQQLHLPLTKAANTITNF 153

Query: 63  GGTGSLTPLIGAFVADTYAGRFWTITVASIIYQIGMFSLTLSAILPQLRPPPCQGD-QVC 121
            GT SLTPL+GAF++D YAGRFWTITVASI++Q+GM SLTLSA+LPQLRPPPC+G+ QVC
Sbjct: 154 SGTASLTPLLGAFISDAYAGRFWTITVASILWQMGMTSLTLSAVLPQLRPPPCKGEHQVC 213

Query: 122 KEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMG 181
           +EAD GQLAILY SLLL ALG+GGIRPCVVAFGADQFDETDPK+ TKTW +FNWYYFVMG
Sbjct: 214 QEADGGQLAILYGSLLLTALGAGGIRPCVVAFGADQFDETDPKEKTKTWNFFNWYYFVMG 273

Query: 182 AAVLVAVTVLVYIQDNVGWNWGLGIPTVAMFLSIIAFVFGYPLYRNLNPAGSPFVRLMQV 241
           A++LVAVTVLVYIQDNVGW WGLGIPT AMFLSII FV GYPLYRNL+P GSPF RL+QV
Sbjct: 274 ASILVAVTVLVYIQDNVGWGWGLGIPTTAMFLSIITFVVGYPLYRNLDPVGSPFTRLLQV 333

Query: 242 CVAAFRKRNLDMVSDPNVLYQNEELDASICLDGKLLHTKHMKFLDKAAIVTEEDDIKS-- 299
           CVAA +KRNL MVSDPN+LY+N+ELDASI   GKLLHT  +KFLDKAAIVTEEDDIKS  
Sbjct: 334 CVAASKKRNLRMVSDPNLLYENDELDASISAAGKLLHTNELKFLDKAAIVTEEDDIKSSQ 393

Query: 300 -PNLWRLNTVHRVEELKSVIRMGPIWASGILLITAYAQQGTFSLQQAKSMDRHLTKSFQI 358
            PNLWRLNTVHRVEELKSVIRMGPIWASGILLITAYAQQGTFSLQQA++MDR L  SFQI
Sbjct: 394 APNLWRLNTVHRVEELKSVIRMGPIWASGILLITAYAQQGTFSLQQARTMDRRLINSFQI 453

Query: 359 PAGSMSVFTMVSMLSTIALYDRIIIPVARKFTGLDRGITFLHRMGIGFVISVLATLVAGF 418
           P GSM+VF+M SML TIALYDR++I VAR+FTGLDRGITFL RM IGFVIS++ATLVAGF
Sbjct: 454 PPGSMTVFSMSSMLITIALYDRLLIRVARRFTGLDRGITFLQRMWIGFVISIVATLVAGF 513

Query: 419 VEMKRKQAALAHGLVDKPHIIIPISVLWLVPQYSLHGIAEAFMSVGHLEFLYDQAPESMR 478
           VE+KRKQAA A+GLV+ P   IPISVLWLVPQYSLHGIAEAFMS+GHLEF YDQAPESM+
Sbjct: 514 VEVKRKQAASAYGLVNSPKSTIPISVLWLVPQYSLHGIAEAFMSIGHLEFFYDQAPESMK 573

Query: 479 STATALFWTANSIGNYVSTLLVTLVHKFSAGPNGSNWLPDNNLNKGKLEYFYWLITLLQV 538
           ST +ALFWTA + GN+VST LV+LVHK+SAGP+GSNWLPD+NLNKGKLE FYWL+TLLQV
Sbjct: 574 STGSALFWTAIAFGNFVSTFLVSLVHKYSAGPDGSNWLPDDNLNKGKLEKFYWLLTLLQV 633

Query: 539 VNVIYYFFCAKIYTFKPIQMHQKGGDSSSSEGVELDNKV 577
           VN+IYY FCAK YTFKPIQ+  K  D+S  +G++L ++V
Sbjct: 634 VNLIYYSFCAKFYTFKPIQIRMKEVDTSEEDGIQLTSRV 672

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356495939|ref|XP_003516828.1| PREDICTED: probable nitrite transporter At1g68570-like [Glycine max]

 Score =  969 bits (2506), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 461/577 (79%), Positives = 519/577 (89%), Gaps = 1/577 (0%)

Query: 1   MEEKGGSHVNRKKGGIITMPFIFANEVCEKLAVVGFHANMISYLTTQLHMPLTKAANTLT 60
           ME+K  +H  RKKGG+ITMPFIF NEVCEKLAVVGF+ NMISYLTTQLHMPLTKAANTLT
Sbjct: 1   MEQKE-NHARRKKGGLITMPFIFGNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLT 59

Query: 61  NFGGTGSLTPLIGAFVADTYAGRFWTITVASIIYQIGMFSLTLSAILPQLRPPPCQGDQV 120
           NFGGT SLTPL+GAF+AD+YAG+FWT+T+ASIIYQIGM SLTLSA+LPQ RPPPC+G++V
Sbjct: 60  NFGGTASLTPLLGAFIADSYAGKFWTVTLASIIYQIGMISLTLSAVLPQFRPPPCKGEEV 119

Query: 121 CKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVM 180
           C++A  GQLAILY SLLL ALGSGGIRPC+VAFGADQFDE+DPKQ T+TW YFNWYYFVM
Sbjct: 120 CQQASAGQLAILYISLLLGALGSGGIRPCIVAFGADQFDESDPKQTTRTWTYFNWYYFVM 179

Query: 181 GAAVLVAVTVLVYIQDNVGWNWGLGIPTVAMFLSIIAFVFGYPLYRNLNPAGSPFVRLMQ 240
           G A+LVAVTVLVYIQDN+GW  GLGIPT+AMFLSIIAF+ GYPLYRNLNP+GSPF RL+Q
Sbjct: 180 GVAILVAVTVLVYIQDNIGWGIGLGIPTIAMFLSIIAFIVGYPLYRNLNPSGSPFTRLVQ 239

Query: 241 VCVAAFRKRNLDMVSDPNVLYQNEELDASICLDGKLLHTKHMKFLDKAAIVTEEDDIKSP 300
           V VAAFRKR +  VS P++LYQN+ELDASI + GKLLH+  MKFLDKAAIVTEEDD K+P
Sbjct: 240 VAVAAFRKRKVPNVSHPSLLYQNDELDASISMGGKLLHSGQMKFLDKAAIVTEEDDNKTP 299

Query: 301 NLWRLNTVHRVEELKSVIRMGPIWASGILLITAYAQQGTFSLQQAKSMDRHLTKSFQIPA 360
           NLWRLNT+HRVEELKS+IRMGPIWASGILLITAYAQQ TFSLQQAK+MDRHLTK+FQIPA
Sbjct: 300 NLWRLNTIHRVEELKSIIRMGPIWASGILLITAYAQQNTFSLQQAKTMDRHLTKTFQIPA 359

Query: 361 GSMSVFTMVSMLSTIALYDRIIIPVARKFTGLDRGITFLHRMGIGFVISVLATLVAGFVE 420
           GSMSVFT+++ML+T A YDR+ I VAR+FTGLDRGI+FLHRMGIGFVIS LATLVAGFVE
Sbjct: 360 GSMSVFTILTMLTTTAFYDRVFIKVARRFTGLDRGISFLHRMGIGFVISTLATLVAGFVE 419

Query: 421 MKRKQAALAHGLVDKPHIIIPISVLWLVPQYSLHGIAEAFMSVGHLEFLYDQAPESMRST 480
           MKRK+AALAHGL D PH IIPISV WLVPQYSLHG+AEAFMS+GHLEF YDQAPESMRST
Sbjct: 420 MKRKKAALAHGLFDHPHAIIPISVFWLVPQYSLHGMAEAFMSIGHLEFFYDQAPESMRST 479

Query: 481 ATALFWTANSIGNYVSTLLVTLVHKFSAGPNGSNWLPDNNLNKGKLEYFYWLITLLQVVN 540
           A ALFWTA + GNYVST++VTLVHKFSAG NGSNWLPDNNLNKGKLEYFYWLIT+LQ +N
Sbjct: 480 AMALFWTAIAAGNYVSTIMVTLVHKFSAGSNGSNWLPDNNLNKGKLEYFYWLITILQFLN 539

Query: 541 VIYYFFCAKIYTFKPIQMHQKGGDSSSSEGVELDNKV 577
           +IYY  CAK+YT+KPIQ+H KG  +S    +EL   +
Sbjct: 540 LIYYLVCAKLYTYKPIQVHDKGDSNSEGNQIELSTTI 576

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357488469|ref|XP_003614522.1| Peptide transporter PTR [Medicago truncatula] gi|355515857|gb|AES97480.1| Peptide transporter PTR [Medicago truncatula]

 Score =  961 bits (2485), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 447/571 (78%), Positives = 511/571 (89%)

Query: 3   EKGGSHVNRKKGGIITMPFIFANEVCEKLAVVGFHANMISYLTTQLHMPLTKAANTLTNF 62
           EK G+   RKKGG+ TMPFIFANEV EKLAVVGF+ANMISYLTTQLHMPLTKAANTLTNF
Sbjct: 9   EKNGNLTRRKKGGLATMPFIFANEVTEKLAVVGFNANMISYLTTQLHMPLTKAANTLTNF 68

Query: 63  GGTGSLTPLIGAFVADTYAGRFWTITVASIIYQIGMFSLTLSAILPQLRPPPCQGDQVCK 122
           GGT SLTPL+GAF++D++AG+F TITVASIIYQIGM SLT+SA+LPQLRPPPC+G++VC+
Sbjct: 69  GGTSSLTPLLGAFISDSFAGKFMTITVASIIYQIGMISLTMSAVLPQLRPPPCKGEEVCQ 128

Query: 123 EADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGA 182
           EA + QLAILY SLLL+ALGSGGIRPCVVAFGADQFDE+DP Q T+TW YFNWYYFVMG 
Sbjct: 129 EASSRQLAILYVSLLLSALGSGGIRPCVVAFGADQFDESDPNQKTRTWTYFNWYYFVMGT 188

Query: 183 AVLVAVTVLVYIQDNVGWNWGLGIPTVAMFLSIIAFVFGYPLYRNLNPAGSPFVRLMQVC 242
           A+LVAVTVLVYIQDNVGW WGLGIPT+AMF+SIIAF+ GYPLYRNLNP GSPF RL++V 
Sbjct: 189 AILVAVTVLVYIQDNVGWGWGLGIPTLAMFISIIAFIGGYPLYRNLNPEGSPFTRLVKVG 248

Query: 243 VAAFRKRNLDMVSDPNVLYQNEELDASICLDGKLLHTKHMKFLDKAAIVTEEDDIKSPNL 302
           VAAFRKR +  V +  +LYQN+ELDASI L GKLLH+  +KFLDKAAIVTEED+ K+P+L
Sbjct: 249 VAAFRKRKIPKVPNSTLLYQNDELDASITLGGKLLHSDQLKFLDKAAIVTEEDNTKTPDL 308

Query: 303 WRLNTVHRVEELKSVIRMGPIWASGILLITAYAQQGTFSLQQAKSMDRHLTKSFQIPAGS 362
           WRL+TVHRVEELKS+IRMGPIWASGILLITAYAQQGTFSLQQAK+M+RHLTKSF+IPAGS
Sbjct: 309 WRLSTVHRVEELKSIIRMGPIWASGILLITAYAQQGTFSLQQAKTMNRHLTKSFEIPAGS 368

Query: 363 MSVFTMVSMLSTIALYDRIIIPVARKFTGLDRGITFLHRMGIGFVISVLATLVAGFVEMK 422
           MSVFT+++ML T ALYDR++I VAR+FTGLDRGITFLHRMGIGFVIS+ AT VAGFVEMK
Sbjct: 369 MSVFTILTMLFTTALYDRVLIRVARRFTGLDRGITFLHRMGIGFVISLFATFVAGFVEMK 428

Query: 423 RKQAALAHGLVDKPHIIIPISVLWLVPQYSLHGIAEAFMSVGHLEFLYDQAPESMRSTAT 482
           RK+ A+ HGL++    IIPISV WLVPQYSLHG+AEAFMS+GHLEF YDQAPESM STA 
Sbjct: 429 RKKVAMEHGLIEHSSEIIPISVFWLVPQYSLHGMAEAFMSIGHLEFFYDQAPESMTSTAM 488

Query: 483 ALFWTANSIGNYVSTLLVTLVHKFSAGPNGSNWLPDNNLNKGKLEYFYWLITLLQVVNVI 542
           A FWT+ S+GNY+STLLVTLVHKF+ GPNG+NWLPDNNLNKGKLEYFYWLITLLQ +N+I
Sbjct: 489 AFFWTSISLGNYISTLLVTLVHKFTKGPNGTNWLPDNNLNKGKLEYFYWLITLLQFINLI 548

Query: 543 YYFFCAKIYTFKPIQMHQKGGDSSSSEGVEL 573
           YY  CAK+YT+K IQ+H KG +SS    +EL
Sbjct: 549 YYLICAKMYTYKQIQVHHKGENSSEDNNIEL 579

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15221439|ref|NP_177024.1| putative nitrite transporter [Arabidopsis thaliana] gi|75266596|sp|Q9SX20.1|PTR18_ARATH RecName: Full=Probable nitrite transporter At1g68570 gi|5734721|gb|AAD49986.1|AC008075_19 Similar to gb|AF023472 peptide transporter from Hordeum vulgare and is a member of the PF|00854 Peptide transporter family. ESTs gb|T41927 and gb|AA395024 come from this gene [Arabidopsis thaliana] gi|20147231|gb|AAM10330.1| At1g68570/F24J5_7 [Arabidopsis thaliana] gi|25090385|gb|AAN72289.1| At1g68570/F24J5_7 [Arabidopsis thaliana] gi|110742209|dbj|BAE99031.1| peptide transporter like [Arabidopsis thaliana] gi|332196691|gb|AEE34812.1| putative nitrite transporter [Arabidopsis thaliana]

 Score =  927 bits (2396), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 451/579 (77%), Positives = 510/579 (88%), Gaps = 4/579 (0%)

Query: 2   EEKGGSHVNRKKGGIITMPFIFANEVCEKLAVVGFHANMISYLTTQLHMPLTKAANTLTN 61
           E++     NR KGG+ITMPFIFANE+CEKLAVVGFHANMISYLTTQLH+PLTKAANTLTN
Sbjct: 13  EKQLHGRPNRPKGGLITMPFIFANEICEKLAVVGFHANMISYLTTQLHLPLTKAANTLTN 72

Query: 62  FGGTGSLTPLIGAFVADTYAGRFWTITVASIIYQIGMFSLTLSAILPQLRPPPCQGDQVC 121
           F GT SLTPL+GAF+AD++AGRFWTIT ASIIYQIGM  LT+SAI+P LRPPPC+G++VC
Sbjct: 73  FAGTSSLTPLLGAFIADSFAGRFWTITFASIIYQIGMTLLTISAIIPTLRPPPCKGEEVC 132

Query: 122 KEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMG 181
             ADT QL+ILY +LLL ALGSGGIRPCVVAFGADQFDE+DP Q TKTW YFNWYYF MG
Sbjct: 133 VVADTAQLSILYVALLLGALGSGGIRPCVVAFGADQFDESDPNQTTKTWNYFNWYYFCMG 192

Query: 182 AAVLVAVTVLVYIQDNVGWNWGLGIPTVAMFLSIIAFVFGYPLYRNLNPAGSPFVRLMQV 241
           AAVL+AVTVLV+IQDNVGW  GLGIPTVAMFLS+IAFV G+ LYR+L PAGSPF RL+QV
Sbjct: 193 AAVLLAVTVLVWIQDNVGWGLGLGIPTVAMFLSVIAFVGGFQLYRHLVPAGSPFTRLIQV 252

Query: 242 CVAAFRKRNLDMVSDPNVLYQNEELDASICLDGKLLHTKHMKFLDKAAIVTEEDDIKS-- 299
            VAAFRKR L MVSDP++LY N+E+DA I L GKL HTKHM FLDKAAIVTEED++K   
Sbjct: 253 GVAAFRKRKLRMVSDPSLLYFNDEIDAPISLGGKLTHTKHMSFLDKAAIVTEEDNLKPGQ 312

Query: 300 -PNLWRLNTVHRVEELKSVIRMGPIWASGILLITAYAQQGTFSLQQAKSMDRHLTKSFQI 358
            PN WRL+TVHRVEELKSVIRMGPI ASGILLITAYAQQGTFSLQQAK+M+RHLT SFQI
Sbjct: 313 IPNHWRLSTVHRVEELKSVIRMGPIGASGILLITAYAQQGTFSLQQAKTMNRHLTNSFQI 372

Query: 359 PAGSMSVFTMVSMLSTIALYDRIIIPVARKFTGLDRGITFLHRMGIGFVISVLATLVAGF 418
           PAGSMSVFT V+ML+TI  YDR+ + VARKFTGL+RGITFLHRMGIGFVIS++ATLVAGF
Sbjct: 373 PAGSMSVFTTVAMLTTIIFYDRVFVKVARKFTGLERGITFLHRMGIGFVISIIATLVAGF 432

Query: 419 VEMKRKQAALAHGLVDKPHIIIPISVLWLVPQYSLHGIAEAFMSVGHLEFLYDQAPESMR 478
           VE+KRK  A+ HGL+DKPH I+PIS LWL+PQY LHG+AEAFMS+GHLEF YDQAPESMR
Sbjct: 433 VEVKRKSVAIEHGLLDKPHTIVPISFLWLIPQYGLHGVAEAFMSIGHLEFFYDQAPESMR 492

Query: 479 STATALFWTANSIGNYVSTLLVTLVHKFSAGPNGSNWLPDNNLNKGKLEYFYWLITLLQV 538
           STATALFW A SIGNYVSTLLVTLVHKFSA P+GSNWLPDNNLN+G+LEYFYWLIT+LQ 
Sbjct: 493 STATALFWMAISIGNYVSTLLVTLVHKFSAKPDGSNWLPDNNLNRGRLEYFYWLITVLQA 552

Query: 539 VNVIYYFFCAKIYTFKPIQMHQKGGDSSS-SEGVELDNK 576
           VN++YY +CAKIYT+KP+Q+H    DSS   E ++L N+
Sbjct: 553 VNLVYYLWCAKIYTYKPVQVHHSKEDSSPVKEELQLSNR 591

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356498272|ref|XP_003517977.1| PREDICTED: probable nitrite transporter At1g68570-like [Glycine max]

 Score =  921 bits (2380), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 444/577 (76%), Positives = 503/577 (87%), Gaps = 1/577 (0%)

Query: 1   MEEKGGSHVNRKKGGIITMPFIFANEVCEKLAVVGFHANMISYLTTQLHMPLTKAANTLT 60
           M++K    + RKKGG+ITMPFIFANEVCEKLAVVGF+ NM SYLTTQLHMPLTKAANTLT
Sbjct: 1   MDQKENDGI-RKKGGLITMPFIFANEVCEKLAVVGFNTNMNSYLTTQLHMPLTKAANTLT 59

Query: 61  NFGGTGSLTPLIGAFVADTYAGRFWTITVASIIYQIGMFSLTLSAILPQLRPPPCQGDQV 120
           NFGGT SLTPL+GAF+AD+YAG+FWT+TVASI+YQIGM SLTLSA+LPQ RPPPC+G++V
Sbjct: 60  NFGGTASLTPLLGAFIADSYAGKFWTVTVASILYQIGMISLTLSAVLPQFRPPPCKGEEV 119

Query: 121 CKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVM 180
           C++A  GQLA+LY SLLL ALGSGGIRPC+VAFGADQF E+DPKQ TKTW YFNWYYFVM
Sbjct: 120 CRQASAGQLAVLYISLLLGALGSGGIRPCIVAFGADQFHESDPKQNTKTWSYFNWYYFVM 179

Query: 181 GAAVLVAVTVLVYIQDNVGWNWGLGIPTVAMFLSIIAFVFGYPLYRNLNPAGSPFVRLMQ 240
           G A+LVAVTVLVYIQDN+GW  GLGIPT+AMF SI AF+ GYPLYRNLNP GSP+ RL+Q
Sbjct: 180 GVAMLVAVTVLVYIQDNIGWGIGLGIPTIAMFFSIAAFIVGYPLYRNLNPDGSPYTRLVQ 239

Query: 241 VCVAAFRKRNLDMVSDPNVLYQNEELDASICLDGKLLHTKHMKFLDKAAIVTEEDDIKSP 300
           V VAAF KRN+  +S+P++LYQN+ELDASI L+GKLLHT+ MKFLDKAAIVTEEDD K  
Sbjct: 240 VIVAAFHKRNVPYLSNPSLLYQNDELDASISLEGKLLHTEQMKFLDKAAIVTEEDDNKIS 299

Query: 301 NLWRLNTVHRVEELKSVIRMGPIWASGILLITAYAQQGTFSLQQAKSMDRHLTKSFQIPA 360
           NLWRLNTVHRVEELK++IRMGPI ASGI LITA AQQ TF LQQAK+MDRHLTK+FQIPA
Sbjct: 300 NLWRLNTVHRVEELKTIIRMGPIGASGIFLITAVAQQHTFFLQQAKTMDRHLTKTFQIPA 359

Query: 361 GSMSVFTMVSMLSTIALYDRIIIPVARKFTGLDRGITFLHRMGIGFVISVLATLVAGFVE 420
           GSM VF +++ML T A YDR+ I VAR+FTGLDRGI+ L RMGIGFVIS LATLVAGFVE
Sbjct: 360 GSMFVFNILTMLITTAFYDRVFIKVARRFTGLDRGISLLQRMGIGFVISTLATLVAGFVE 419

Query: 421 MKRKQAALAHGLVDKPHIIIPISVLWLVPQYSLHGIAEAFMSVGHLEFLYDQAPESMRST 480
           M RK+AA AHGL+D PH IIPISV WL+PQYSL+G+AEAFMS+GHLEF YDQAPESMRST
Sbjct: 420 MMRKKAASAHGLLDHPHAIIPISVFWLLPQYSLNGMAEAFMSIGHLEFFYDQAPESMRST 479

Query: 481 ATALFWTANSIGNYVSTLLVTLVHKFSAGPNGSNWLPDNNLNKGKLEYFYWLITLLQVVN 540
           A ALFW + S GNYVSTLLVTLVHKFSA PNGSNWLPDNNLNKGKLEYFYWLIT+LQ+ N
Sbjct: 480 AMALFWASISAGNYVSTLLVTLVHKFSARPNGSNWLPDNNLNKGKLEYFYWLITILQIFN 539

Query: 541 VIYYFFCAKIYTFKPIQMHQKGGDSSSSEGVELDNKV 577
           +IYY  CAK+YT+KPI+   KG  SS    +EL + V
Sbjct: 540 LIYYLICAKLYTYKPIEFQDKGDSSSKGNQIELSSTV 576

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297838617|ref|XP_002887190.1| proton-dependent oligopeptide transport family protein [Arabidopsis lyrata subsp. lyrata] gi|297333031|gb|EFH63449.1| proton-dependent oligopeptide transport family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  919 bits (2374), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 447/580 (77%), Positives = 508/580 (87%), Gaps = 5/580 (0%)

Query: 2   EEKGGSHVNRKKGGIITMPFIFA-NEVCEKLAVVGFHANMISYLTTQLHMPLTKAANTLT 60
           E++     NR KGG+ITMPFIF  NE+CEKLAVVGFHANMISYLTTQLH+PLTKAANTLT
Sbjct: 13  EKQLHGRPNRPKGGLITMPFIFGMNEICEKLAVVGFHANMISYLTTQLHLPLTKAANTLT 72

Query: 61  NFGGTGSLTPLIGAFVADTYAGRFWTITVASIIYQIGMFSLTLSAILPQLRPPPCQGDQV 120
           NF GT SLTPL+GAF+AD++AGRFWTIT ASIIYQIGM  LT+SAI+P LRPPPC+G++V
Sbjct: 73  NFAGTSSLTPLLGAFIADSFAGRFWTITFASIIYQIGMTLLTISAIIPTLRPPPCKGEEV 132

Query: 121 CKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVM 180
           C  ADT QL ILY +LLL ALGSGGIRPCVVAFGADQFDE+DP Q TKTW YFNWYYF M
Sbjct: 133 CVVADTAQLTILYVALLLGALGSGGIRPCVVAFGADQFDESDPNQTTKTWNYFNWYYFCM 192

Query: 181 GAAVLVAVTVLVYIQDNVGWNWGLGIPTVAMFLSIIAFVFGYPLYRNLNPAGSPFVRLMQ 240
           GAAVL+AVTVLV+IQDNVGW  GLGIPTVAMFLS+IAFV G+ LYR+L+PAGSPF RL+Q
Sbjct: 193 GAAVLLAVTVLVWIQDNVGWGLGLGIPTVAMFLSVIAFVGGFQLYRHLDPAGSPFTRLIQ 252

Query: 241 VCVAAFRKRNLDMVSDPNVLYQNEELDASICLDGKLLHTKHMKFLDKAAIVTEEDDIKS- 299
           V VAAFRKR L MVSDP++LY N+E+DA I L GKL HTKHM FLDKAAIVTE+D++K  
Sbjct: 253 VGVAAFRKRKLRMVSDPSLLYFNDEIDAPISLGGKLTHTKHMSFLDKAAIVTEQDNLKPG 312

Query: 300 --PNLWRLNTVHRVEELKSVIRMGPIWASGILLITAYAQQGTFSLQQAKSMDRHLTKSFQ 357
             PN WRL+TVHRVEELKSVIRMGPI ASGILLITAYAQQGTFSLQQAK+M+RHLT SFQ
Sbjct: 313 QIPNHWRLSTVHRVEELKSVIRMGPIGASGILLITAYAQQGTFSLQQAKTMNRHLTNSFQ 372

Query: 358 IPAGSMSVFTMVSMLSTIALYDRIIIPVARKFTGLDRGITFLHRMGIGFVISVLATLVAG 417
           IPAGSMSVFT ++ML+TI  YDRI + VARKFTGL+RGITFLHRMGIGFVIS++ATLVAG
Sbjct: 373 IPAGSMSVFTTIAMLTTIVFYDRIFVKVARKFTGLERGITFLHRMGIGFVISIIATLVAG 432

Query: 418 FVEMKRKQAALAHGLVDKPHIIIPISVLWLVPQYSLHGIAEAFMSVGHLEFLYDQAPESM 477
           FVE+KRK  A+ HGL+DKPH I+PIS LWL+PQY LHG+AEAFMS+GHLEF YDQ PESM
Sbjct: 433 FVEIKRKSVAIEHGLLDKPHTIVPISFLWLIPQYGLHGVAEAFMSIGHLEFFYDQVPESM 492

Query: 478 RSTATALFWTANSIGNYVSTLLVTLVHKFSAGPNGSNWLPDNNLNKGKLEYFYWLITLLQ 537
           RSTATALFW A SIGNYVSTLLVTLVHKFSA P+GSNWLPDNNLN+G+LEYFYWLITLLQ
Sbjct: 493 RSTATALFWMAISIGNYVSTLLVTLVHKFSAKPDGSNWLPDNNLNRGRLEYFYWLITLLQ 552

Query: 538 VVNVIYYFFCAKIYTFKPIQMHQKGGDSSS-SEGVELDNK 576
            VN++YY +CAKIYT+KP+Q+H    +SS   + ++L N+
Sbjct: 553 AVNLVYYLWCAKIYTYKPVQVHHSKEESSPVKDELQLSNR 592

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|312281607|dbj|BAJ33669.1| unnamed protein product [Thellungiella halophila]

 Score =  915 bits (2364), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 456/581 (78%), Positives = 517/581 (88%), Gaps = 6/581 (1%)

Query: 2   EEKGGSHVNRK--KGGIITMPFIFANEVCEKLAVVGFHANMISYLTTQLHMPLTKAANTL 59
           EE+   H NR   KGG+ITMPFIFANE+CEKLAVVGFHANMISYLTTQLH+PLTKAANTL
Sbjct: 13  EEEKQLHGNRSRPKGGLITMPFIFANEICEKLAVVGFHANMISYLTTQLHLPLTKAANTL 72

Query: 60  TNFGGTGSLTPLIGAFVADTYAGRFWTITVASIIYQIGMFSLTLSAILPQLRPPPCQGDQ 119
           TNF GT SLTPL+GAFVAD++AGRFWTIT ASIIYQIGM  LT+SAI+P LRPPPC+G++
Sbjct: 73  TNFAGTSSLTPLLGAFVADSFAGRFWTITFASIIYQIGMTLLTISAIIPTLRPPPCKGEE 132

Query: 120 VCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFV 179
           VC EADT QL+ILY +LLL ALGSGGIRPCVVAFGAD+FDE+DPKQ TKTW YFNWYYF 
Sbjct: 133 VCVEADTAQLSILYIALLLGALGSGGIRPCVVAFGADRFDESDPKQTTKTWNYFNWYYFC 192

Query: 180 MGAAVLVAVTVLVYIQDNVGWNWGLGIPTVAMFLSIIAFVFGYPLYRNLNPAGSPFVRLM 239
           MGAAVLVAVTVLVYIQDNVGW  GLGIPTVAMFLS+IAFV G+ LYR+L PAGSPF RL+
Sbjct: 193 MGAAVLVAVTVLVYIQDNVGWGLGLGIPTVAMFLSVIAFVGGFRLYRHLVPAGSPFTRLI 252

Query: 240 QVCVAAFRKRNLDMVSDPNVLYQNEELDASICLDGKLLHTKHMKFLDKAAIVTEEDDIKS 299
           QV VAAFRKRNL MVSDP++LY N+E+D  I L GKL HTKHM FLDKAAIVTE+D++K 
Sbjct: 253 QVSVAAFRKRNLRMVSDPSLLYFNDEIDDPISLGGKLTHTKHMSFLDKAAIVTEQDNLKP 312

Query: 300 ---PNLWRLNTVHRVEELKSVIRMGPIWASGILLITAYAQQGTFSLQQAKSMDRHLTKSF 356
              PN WRL+T+HRVEELKSVIRMGPI ASGILLITAYAQQGTFSLQQAK+M+RHLTKSF
Sbjct: 313 GQIPNPWRLSTIHRVEELKSVIRMGPIGASGILLITAYAQQGTFSLQQAKTMNRHLTKSF 372

Query: 357 QIPAGSMSVFTMVSMLSTIALYDRIIIPVARKFTGLDRGITFLHRMGIGFVISVLATLVA 416
           QIPAGSMSVFT V+ML+TI  YDRI + +AR+FTGL+RGITFLHRMGIGFVIS++ATLVA
Sbjct: 373 QIPAGSMSVFTTVAMLTTIVFYDRIFVKIARRFTGLERGITFLHRMGIGFVISIIATLVA 432

Query: 417 GFVEMKRKQAALAHGLVDKPHIIIPISVLWLVPQYSLHGIAEAFMSVGHLEFLYDQAPES 476
           GFVE+KRK+ A+ HGL+DKPH ++PIS LWL+PQYSLHGIAEAFMS+GHLEF YDQAPES
Sbjct: 433 GFVEIKRKRVAIEHGLLDKPHTVVPISFLWLIPQYSLHGIAEAFMSIGHLEFFYDQAPES 492

Query: 477 MRSTATALFWTANSIGNYVSTLLVTLVHKFSAGPNGSNWLPDNNLNKGKLEYFYWLITLL 536
           MRSTATALFW A SIGNYVSTLLVTLVHKFSA P+GSNWLPDNNLN+G+LEYFYWLITLL
Sbjct: 493 MRSTATALFWMAISIGNYVSTLLVTLVHKFSAKPDGSNWLPDNNLNRGRLEYFYWLITLL 552

Query: 537 QVVNVIYYFFCAKIYTFKPIQMHQ-KGGDSSSSEGVELDNK 576
           QVVN++YY +CAKIYT+KP+Q+H  K  +S   + ++L N+
Sbjct: 553 QVVNLVYYLWCAKIYTYKPVQVHHSKEVESPVRDELQLSNR 593

Source: Thellungiella halophila

Species: Eutrema halophilum

Genus: Eutrema

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449465908|ref|XP_004150669.1| PREDICTED: probable nitrite transporter At1g68570-like [Cucumis sativus]

 Score =  899 bits (2323), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 416/581 (71%), Positives = 495/581 (85%), Gaps = 6/581 (1%)

Query: 3   EKGGSHVNRKKGGIITMPFIFANEVCEKLAVVGFHANMISYLTTQLHMPLTKAANTLTNF 62
           EK   H+ RKKGG+ITMPFIFANE+CEK+AVVGF+ NMISYLT QLHMP TKAANT+TNF
Sbjct: 4   EKKEKHMERKKGGLITMPFIFANEICEKIAVVGFNTNMISYLTKQLHMPSTKAANTITNF 63

Query: 63  GGTGSLTPLIGAFVADTYAGRFWTITVASIIYQIGMFSLTLSAILPQLRPPPCQGDQVCK 122
            GT SLTPLIGAF+AD+Y GRFWTITVASI+YQIGM SLT SA++P LRPPPC+  ++CK
Sbjct: 64  SGTASLTPLIGAFIADSYVGRFWTITVASILYQIGMVSLTTSAVVPGLRPPPCKAGEICK 123

Query: 123 EADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGA 182
           EA  GQL ILY SLLL ALGSGGIRPCVV+FGADQF+E DPK+ TKT+KYFNWYYF MGA
Sbjct: 124 EATGGQLGILYVSLLLTALGSGGIRPCVVSFGADQFEEGDPKRGTKTYKYFNWYYFAMGA 183

Query: 183 AVLVAVTVLVYIQDNVGWNWGLGIPTVAMFLSIIAFVFGYPLYRNLNPAGSPFVRLMQVC 242
           ++LVAVTVLVY+QDN+GW WG GIPT+AM +SII FV GYP+YR+L+P+GSPF RL+QV 
Sbjct: 184 SMLVAVTVLVYVQDNIGWGWGFGIPTIAMLVSIITFVVGYPIYRHLDPSGSPFTRLLQVG 243

Query: 243 VAAFRKRNLDMVSDPNVLYQNEELDASICLDGKLLHTKHMKFLDKAAIVTEEDDIK---- 298
           VAA++KR + +VSD N+LYQN ++D  I  DG LLHTKHM+FLDKAAIVTEE+ +K    
Sbjct: 244 VAAYKKRKVCIVSDSNLLYQNRDIDDPISRDGNLLHTKHMRFLDKAAIVTEEEKVKMGEE 303

Query: 299 --SPNLWRLNTVHRVEELKSVIRMGPIWASGILLITAYAQQGTFSLQQAKSMDRHLTKSF 356
              PNLW+L+TVHRVEELKSVIRMGPIWASGI+LITAY+QQ TFSL QA +M+RHLT SF
Sbjct: 304 LGKPNLWKLSTVHRVEELKSVIRMGPIWASGIILITAYSQQYTFSLLQASTMNRHLTNSF 363

Query: 357 QIPAGSMSVFTMVSMLSTIALYDRIIIPVARKFTGLDRGITFLHRMGIGFVISVLATLVA 416
           QIPAGSM+VFT+++ML T+ALYDR+ IP+AR+FTGLDRGITFL RMGIG VIS+ ATL+A
Sbjct: 364 QIPAGSMTVFTLLTMLITVALYDRVFIPIARRFTGLDRGITFLTRMGIGLVISIFATLIA 423

Query: 417 GFVEMKRKQAALAHGLVDKPHIIIPISVLWLVPQYSLHGIAEAFMSVGHLEFLYDQAPES 476
           GFVE KRK  A  HGL+D P  IIPISV WLVPQYSLHG+AEAFMS+GHLEF YDQ+PES
Sbjct: 424 GFVEQKRKHVAFTHGLIDHPTSIIPISVFWLVPQYSLHGMAEAFMSIGHLEFFYDQSPES 483

Query: 477 MRSTATALFWTANSIGNYVSTLLVTLVHKFSAGPNGSNWLPDNNLNKGKLEYFYWLITLL 536
           MRSTA ALFWT+ S GNY+STLLV+LVHK+S+G NG NW+ ++N++KGKLE FYWL+T L
Sbjct: 484 MRSTAMALFWTSISAGNYLSTLLVSLVHKYSSGANGENWIRNDNISKGKLENFYWLVTGL 543

Query: 537 QVVNVIYYFFCAKIYTFKPIQMHQKGGDSSSSEGVELDNKV 577
           QV+N+ YY  CAK YTFKP+++ +K  DSS  + ++L N V
Sbjct: 544 QVLNLAYYIVCAKFYTFKPLEVQRKVVDSSKVDELQLVNPV 584

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449514761|ref|XP_004164473.1| PREDICTED: probable nitrite transporter At1g68570-like [Cucumis sativus]

 Score =  892 bits (2306), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 413/575 (71%), Positives = 492/575 (85%), Gaps = 6/575 (1%)

Query: 9   VNRKKGGIITMPFIFANEVCEKLAVVGFHANMISYLTTQLHMPLTKAANTLTNFGGTGSL 68
           + RKKGG+ITMPFIFANE+CEK+AVVGF+ NMISYLT QLHMP TKAANT+TNF GT SL
Sbjct: 1   MERKKGGLITMPFIFANEICEKIAVVGFNTNMISYLTKQLHMPSTKAANTITNFSGTASL 60

Query: 69  TPLIGAFVADTYAGRFWTITVASIIYQIGMFSLTLSAILPQLRPPPCQGDQVCKEADTGQ 128
           TPLIGAF+AD+Y GRFWTITVASI+YQIGM SLT SA++P LRPPPC+  ++CKEA  GQ
Sbjct: 61  TPLIGAFIADSYVGRFWTITVASILYQIGMVSLTTSAVVPGLRPPPCKAGEICKEATGGQ 120

Query: 129 LAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAVLVAV 188
           L ILY SLLL ALGSGGIRPCVV+FGADQF+E DPK+ TKT+KYFNWYYF MGA++LVAV
Sbjct: 121 LGILYVSLLLTALGSGGIRPCVVSFGADQFEEGDPKRGTKTYKYFNWYYFAMGASMLVAV 180

Query: 189 TVLVYIQDNVGWNWGLGIPTVAMFLSIIAFVFGYPLYRNLNPAGSPFVRLMQVCVAAFRK 248
           TVLVY+QDN+GW WG GIPT+AM +SII FV GYP+YR+L+P+GSPF RL+QV VAA++K
Sbjct: 181 TVLVYVQDNIGWGWGFGIPTIAMLVSIITFVVGYPIYRHLDPSGSPFTRLLQVGVAAYKK 240

Query: 249 RNLDMVSDPNVLYQNEELDASICLDGKLLHTKHMKFLDKAAIVTEEDDIK------SPNL 302
           R + +VSD N+LYQN ++D  I  DG LLHTKHM+FLDKAAIVTEE+ +K       PNL
Sbjct: 241 RKVCIVSDSNLLYQNRDIDDPISRDGNLLHTKHMRFLDKAAIVTEEEKVKMGEELGKPNL 300

Query: 303 WRLNTVHRVEELKSVIRMGPIWASGILLITAYAQQGTFSLQQAKSMDRHLTKSFQIPAGS 362
           W+L+TVHRVEELKSVIRMGPIWASGI+LITAY+QQ TFSL QA +M+RHLT SFQIPAGS
Sbjct: 301 WKLSTVHRVEELKSVIRMGPIWASGIILITAYSQQYTFSLLQASTMNRHLTNSFQIPAGS 360

Query: 363 MSVFTMVSMLSTIALYDRIIIPVARKFTGLDRGITFLHRMGIGFVISVLATLVAGFVEMK 422
           M+VFT+++ML T+ALYDR+ IP+AR+FTGLDRGITFL RMGIG VIS+ ATL+AGFVE K
Sbjct: 361 MTVFTLLTMLITVALYDRVFIPIARRFTGLDRGITFLTRMGIGLVISIFATLIAGFVEQK 420

Query: 423 RKQAALAHGLVDKPHIIIPISVLWLVPQYSLHGIAEAFMSVGHLEFLYDQAPESMRSTAT 482
           RK  A  HGL+D P  IIPISV WLVPQYSLHG+AEAFMS+GHLEF YDQ+PESMRSTA 
Sbjct: 421 RKHVAFTHGLIDHPTSIIPISVFWLVPQYSLHGMAEAFMSIGHLEFFYDQSPESMRSTAM 480

Query: 483 ALFWTANSIGNYVSTLLVTLVHKFSAGPNGSNWLPDNNLNKGKLEYFYWLITLLQVVNVI 542
           ALFWT+ S GNY+STLLV+LVHK+S+G NG NW+ ++N++KGKLE FYWL+T LQV+N+ 
Sbjct: 481 ALFWTSISAGNYLSTLLVSLVHKYSSGANGENWIRNDNISKGKLENFYWLVTGLQVLNLA 540

Query: 543 YYFFCAKIYTFKPIQMHQKGGDSSSSEGVELDNKV 577
           YY  CAK YTFKP+++ +K  DSS  + ++L N V
Sbjct: 541 YYIVCAKFYTFKPLEVQRKVVDSSKVDELQLVNPV 575

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	577
TAIR|locus:2026884	596	AT1G68570 [Arabidopsis thalian	0.982	0.951	0.744	3.5e-233
TAIR|locus:2041125	585	PTR2 "peptide transporter 2" [	0.944	0.931	0.446	8.3e-122
TAIR|locus:2080235	570	PTR1 "peptide transporter 1" [	0.935	0.947	0.428	8.5e-120
TAIR|locus:2150124	570	PTR5 "peptide transporter 5" [	0.941	0.952	0.427	1.3e-118
TAIR|locus:2018032	590	PTR6 "peptide transporter 6" [	0.922	0.901	0.431	2.2e-114
TAIR|locus:2041140	545	PTR4 "peptide transporter 4" [	0.440	0.466	0.419	1.5e-104
TAIR|locus:2196800	620	NRT1.7 "nitrate transporter 1.	0.968	0.901	0.391	3.7e-103
TAIR|locus:2035005	587	NRT1.9 "nitrate transporter 1.	0.946	0.930	0.377	5e-99
TAIR|locus:2093442	591	AT3G16180 [Arabidopsis thalian	0.922	0.900	0.388	4.5e-98
TAIR|locus:2161438	582	PTR3 "peptide transporter 3" [	0.935	0.927	0.364	2e-97

TAIR|locus:2026884 AT1G68570 [Arabidopsis thaliana (taxid:3702)]

 Score = 2249 (796.7 bits), Expect = 3.5e-233, P = 3.5e-233
 Identities = 425/571 (74%), Positives = 479/571 (83%)

Query:    10 NRKKGGIITMPFIFANEVCEKLAVVGFHANMISYLTTQLHMPLTKAANTLTNFGGTGSLT 69
             NR KGG+ITMPFIFANE+CEKLAVVGFHANMISYLTTQLH+PLTKAANTLTNF GT SLT
Sbjct:    21 NRPKGGLITMPFIFANEICEKLAVVGFHANMISYLTTQLHLPLTKAANTLTNFAGTSSLT 80

Query:    70 PLIGAFVADTYAGRFWTITVASIIYQIGMFSLTLSAILPQLRPPPCQGDQVCKEADTXXX 129
             PL+GAF+AD++AGRFWTIT ASIIYQIGM  LT+SAI+P LRPPPC+G++VC  ADT   
Sbjct:    81 PLLGAFIADSFAGRFWTITFASIIYQIGMTLLTISAIIPTLRPPPCKGEEVCVVADTAQL 140

Query:   130 XXXXXXXXXXXXXXXXXRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGXXXXXXXX 189
                              RPCVVAFGADQFDE+DP Q TKTW YFNWYYF MG        
Sbjct:   141 SILYVALLLGALGSGGIRPCVVAFGADQFDESDPNQTTKTWNYFNWYYFCMGAAVLLAVT 200

Query:   190 XXXYIQDNVGWNWGLGIPTVAMFLSIIAFVFGYPLYRNLNPAGSPFVRLMQVCVAAFRKR 249
                +IQDNVGW  GLGIPTVAMFLS+IAFV G+ LYR+L PAGSPF RL+QV VAAFRKR
Sbjct:   201 VLVWIQDNVGWGLGLGIPTVAMFLSVIAFVGGFQLYRHLVPAGSPFTRLIQVGVAAFRKR 260

Query:   250 NLDMVSDPNVLYQNEELDASICLDGKLLHTKHMKFLDKAAIVTEEDDIKS---PNLWRLN 306
              L MVSDP++LY N+E+DA I L GKL HTKHM FLDKAAIVTEED++K    PN WRL+
Sbjct:   261 KLRMVSDPSLLYFNDEIDAPISLGGKLTHTKHMSFLDKAAIVTEEDNLKPGQIPNHWRLS 320

Query:   307 TVHRVEELKSVIRMGPIWASGILLITAYAQQGTFSLQQAKSMDRHLTKSFQIPAGSMSVF 366
             TVHRVEELKSVIRMGPI ASGILLITAYAQQGTFSLQQAK+M+RHLT SFQIPAGSMSVF
Sbjct:   321 TVHRVEELKSVIRMGPIGASGILLITAYAQQGTFSLQQAKTMNRHLTNSFQIPAGSMSVF 380

Query:   367 TMVSMLSTIALYDRIIIPVARKFTGLDRGITFLHRMGIGFVISVLATLVAGFVEMKRKQA 426
             T V+ML+TI  YDR+ + VARKFTGL+RGITFLHRMGIGFVIS++ATLVAGFVE+KRK  
Sbjct:   381 TTVAMLTTIIFYDRVFVKVARKFTGLERGITFLHRMGIGFVISIIATLVAGFVEVKRKSV 440

Query:   427 ALAHGLVDKPHIIIPISVLWLVPQYSLHGIAEAFMSVGHLEFLYDQAPESMRSTATALFW 486
             A+ HGL+DKPH I+PIS LWL+PQY LHG+AEAFMS+GHLEF YDQAPESMRSTATALFW
Sbjct:   441 AIEHGLLDKPHTIVPISFLWLIPQYGLHGVAEAFMSIGHLEFFYDQAPESMRSTATALFW 500

Query:   487 TANSIGNYVSTLLVTLVHKFSAGPNGSNWLPDNNLNKGKLEYFYWLITLLQVVNVIYYFF 546
              A SIGNYVSTLLVTLVHKFSA P+GSNWLPDNNLN+G+LEYFYWLIT+LQ VN++YY +
Sbjct:   501 MAISIGNYVSTLLVTLVHKFSAKPDGSNWLPDNNLNRGRLEYFYWLITVLQAVNLVYYLW 560

Query:   547 CAKIYTFKPIQMHQKGGDSSS-SEGVELDNK 576
             CAKIYT+KP+Q+H    DSS   E ++L N+
Sbjct:   561 CAKIYTYKPVQVHHSKEDSSPVKEELQLSNR 591

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2041125 PTR2 "peptide transporter 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 1198 (426.8 bits), Expect = 8.3e-122, P = 8.3e-122
 Identities = 247/553 (44%), Positives = 334/553 (60%)

Query:     5 GGSHVNRKKGGIITMPFIFANEVCEKLAVVGFHANMISYLTTQLHMPLTKAANTLTNFGG 64
             G   +  K G     PFI  NE CE+LA  G   N+I+YLTT+LH     AA  +T + G
Sbjct:    34 GNPPLKEKTGNWKACPFILGNECCERLAYYGIAGNLITYLTTKLHQGNVSAATNVTTWQG 93

Query:    65 TGSLTPLIGAFVADTYAGRFWTITVASIIYQIGMFSLTLSAILPQLRPPPCQGDQVCKEA 124
             T  LTPLIGA +AD Y GR+WTI   S IY IGM +LTLSA +P L+P  C GD  C  A
Sbjct:    94 TCYLTPLIGAVLADAYWGRYWTIACFSGIYFIGMSALTLSASVPALKPAECIGD-FCPSA 152

Query:   125 DTXXXXXXXXXXXXXXXXXXXXRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGXXX 184
                                   +PCV +FGADQFD+TD ++  +   +FNW+YF +    
Sbjct:   153 TPAQYAMFFGGLYLIALGTGGIKPCVSSFGADQFDDTDSRERVRKASFFNWFYFSINIGA 212

Query:   185 XXXXXXXXYIQDNVGWNWGLGIPTVAMFLSIIAFVFGYPLYRNLNPAGSPFVRLMQVCVA 244
                     +IQ+N GW  G GIPTV M L+I +F FG PLYR   P GSP  R+ QV VA
Sbjct:   213 LVSSSLLVWIQENRGWGLGFGIPTVFMGLAIASFFFGTPLYRFQKPGGSPITRISQVVVA 272

Query:   245 AFRKRNLDMVSDPNVLYQNEELDASICLDGKLLHTKHMKFLDKAAIVTEEDDIKS---PN 301
             +FRK ++ +  D  +LY+ ++ +++I    K+ HT   ++LDKAA+++EE+  KS    N
Sbjct:   273 SFRKSSVKVPEDATLLYETQDKNSAIAGSRKIEHTDDCQYLDKAAVISEEES-KSGDYSN 331

Query:   302 LWRLNTVHRVEELKSVIRMGPIWASGILLITAYAQQGTFSLQQAKSMDRHLTKSFQIPAG 361
              WRL TV +VEELK +IRM PIWASGI+    YAQ  T  +QQ ++M+  +  SFQ+P  
Sbjct:   332 SWRLCTVTQVEELKILIRMFPIWASGIIFSAVYAQMSTMFVQQGRAMNCKIG-SFQLPPA 390

Query:   362 SMSVFTMVSMLSTIALYDRIIIPVARKFTGLDRGITFLHRMGIGFVISVLATLVAGFVEM 421
             ++  F   S++  + LYDR I+P+ARKFTG+D+G T + RMGIG  +SVL    A  VE+
Sbjct:   391 ALGTFDTASVIIWVPLYDRFIVPLARKFTGVDKGFTEIQRMGIGLFVSVLCMAAAAIVEI 450

Query:   422 KRKQAALAHGLVDKPHIIIPISVLWLVPQYSLHGIAEAFMSVGHLEFLYDQAPESMRSTA 481
              R   A   GLV+     +PISVLW +PQY + G AE F  +G LEF YDQ+P++MRS  
Sbjct:   451 IRLHMANDLGLVESG-APVPISVLWQIPQYFILGAAEVFYFIGQLEFFYDQSPDAMRSLC 509

Query:   482 TALFWTANSIGNYVSTLLVTLVHKFSAGPNGSNWLPDNNLNKGKLEYFYWLITLLQVVNV 541
             +AL    N++GNY+S+L++TLV  F+       W+ DN LN G L+YF+WL+  L +VN+
Sbjct:   510 SALALLTNALGNYLSSLILTLVTYFTTRNGQEGWISDN-LNSGHLDYFFWLLAGLSLVNM 568

Query:   542 IYYFFCAKIYTFK 554
               YFF A  Y  K
Sbjct:   569 AVYFFSAARYKQK 581

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA

GO:0015112 "nitrate transmembrane transporter activity" evidence=IDA

GO:0005773 "vacuole" evidence=IDA

GO:0000325 "plant-type vacuole" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0009705 "plant-type vacuole membrane" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0006869 "lipid transport" evidence=RCA

GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=RCA

GO:0010351 "lithium ion transport" evidence=RCA

GO:0016558 "protein import into peroxisome matrix" evidence=RCA

GO:0015334 "high affinity oligopeptide transporter activity" evidence=IDA

GO:0042936 "dipeptide transporter activity" evidence=IGI;IDA

GO:0042937 "tripeptide transporter activity" evidence=IDA

GO:0042938 "dipeptide transport" evidence=IDA

GO:0042939 "tripeptide transport" evidence=IDA

GO:0015197 "peptide transporter activity" evidence=ISS

GO:0015833 "peptide transport" evidence=TAS

TAIR|locus:2080235 PTR1 "peptide transporter 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1179 (420.1 bits), Expect = 8.5e-120, P = 8.5e-120
 Identities = 235/548 (42%), Positives = 334/548 (60%)

Query:    10 NRKK-GGIITMPFIFANEVCEKLAVVGFHANMISYLTTQLHMPLTKAANTLTNFGGTGSL 68
             N++K G      FI  NE CE+LA  G   N+++YL ++L+     AAN +TN+ GT  +
Sbjct:    21 NKEKTGNWKACRFILGNECCERLAYYGMGTNLVNYLESRLNQGNATAANNVTNWSGTCYI 80

Query:    69 TPLIGAFVADTYAGRFWTITVASIIYQIGMFSLTLSAILPQLRPPPCQGDQVCKEADTXX 128
             TPLIGAF+AD Y GR+WTI     IY  GM  LTLSA +P L+P  C  D  C   ++  
Sbjct:    81 TPLIGAFIADAYLGRYWTIATFVFIYVSGMTLLTLSASVPGLKPGNCNAD-TC-HPNSSQ 138

Query:   129 XXXXXXXXXXXXXXXXXXRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGXXXXXXX 188
                               +PCV +FGADQFDE D  +  K   +FNW+YF +        
Sbjct:   139 TAVFFVALYMIALGTGGIKPCVSSFGADQFDENDENEKIKKSSFFNWFYFSINVGALIAA 198

Query:   189 XXXXYIQDNVGWNWGLGIPTVAMFLSIIAFVFGYPLYRNLNPAGSPFVRLMQVCVAAFRK 248
                 +IQ NVGW WG G+PTVAM +++  F FG   YR   P GSP  R+ QV VAAFRK
Sbjct:   199 TVLVWIQMNVGWGWGFGVPTVAMVIAVCFFFFGSRFYRLQRPGGSPLTRIFQVIVAAFRK 258

Query:   249 RNLDMVSDPNVLYQNEELDASICLDGKLLHTKHMKFLDKAAIVTEEDDIKSP--NLWRLN 306
              ++ +  D ++L++  + +++I    KL+HT ++KF DKAA+ ++ D IK    N WRL 
Sbjct:   259 ISVKVPEDKSLLFETADDESNIKGSRKLVHTDNLKFFDKAAVESQSDSIKDGEVNPWRLC 318

Query:   307 TVHRVEELKSVIRMGPIWASGILLITAYAQQGTFSLQQAKSMDRHLTKSFQIPAGSMSVF 366
             +V +VEELKS+I + P+WA+GI+  T Y+Q  T  + Q  +MD+H+ K+F+IP+ S+S+F
Sbjct:   319 SVTQVEELKSIITLLPVWATGIVFATVYSQMSTMFVLQGNTMDQHMGKNFEIPSASLSLF 378

Query:   367 TMVSMLSTIALYDRIIIPVARKFTGLDRGITFLHRMGIGFVISVLATLVAGFVEMKRKQA 426
               VS+L    +YD+ IIP+ARKFT  +RG T L RMGIG V+S+ A + AG +E+ R   
Sbjct:   379 DTVSVLFWTPVYDQFIIPLARKFTRNERGFTQLQRMGIGLVVSIFAMITAGVLEVVRLDY 438

Query:   427 ALAHGLVDKPHIIIPISVLWLVPQYSLHGIAEAFMSVGHLEFLYDQAPESMRSTATALFW 486
                H   D+  I   +S+ W +PQY L G AE F  +G LEF YDQAP++MRS  +AL  
Sbjct:   439 VKTHNAYDQKQI--HMSIFWQIPQYLLIGCAEVFTFIGQLEFFYDQAPDAMRSLCSALSL 496

Query:   487 TANSIGNYVSTLLVTLVHKFSAGPNGSNWLPDNNLNKGKLEYFYWLITLLQVVNVIYYFF 546
             T  ++GNY+ST+LVT+V K +       W+PDN LN+G L+YF++L+  L  +N + Y +
Sbjct:   497 TTVALGNYLSTVLVTVVMKITKKNGKPGWIPDN-LNRGHLDYFFYLLATLSFLNFLVYLW 555

Query:   547 CAKIYTFK 554
              +K Y +K
Sbjct:   556 ISKRYKYK 563

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0042936 "dipeptide transporter activity" evidence=IGI;IDA

GO:0042937 "tripeptide transporter activity" evidence=IDA

GO:0042938 "dipeptide transport" evidence=IDA

GO:0042939 "tripeptide transport" evidence=IDA

GO:0006807 "nitrogen compound metabolic process" evidence=IMP

GO:0009506 "plasmodesma" evidence=IDA

GO:0015824 "proline transport" evidence=RCA

GO:0015996 "chlorophyll catabolic process" evidence=RCA

TAIR|locus:2150124 PTR5 "peptide transporter 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 1168 (416.2 bits), Expect = 1.3e-118, P = 1.3e-118
 Identities = 237/554 (42%), Positives = 336/554 (60%)

Query:    10 NRKKGGII-TMPFIFANEVCEKLAVVGFHANMISYLTTQLHMPLTKAANTLTNFGGTGSL 68
             N+ K G      FI   E CE+LA  G   N+I+YL  Q++M    A+ +++N+ GT   
Sbjct:    22 NKNKTGTWKACRFILGTECCERLAYYGMSTNLINYLEKQMNMENVSASKSVSNWSGTCYA 81

Query:    69 TPLIGAFVADTYAGRFWTITVASIIYQIGMFSLTLSAILPQLRPPPCQGDQVCKEADTXX 128
             TPLIGAF+AD Y GR+WTI    +IY  GM  LT+SA +P L P  C G+  C  A    
Sbjct:    82 TPLIGAFIADAYLGRYWTIASFVVIYIAGMTLLTISASVPGLTPT-CSGE-TC-HATAGQ 138

Query:   129 XXXXXXXXXXXXXXXXXXRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGXXXXXXX 188
                               +PCV +FGADQFD+TD K+      +FNW+YFV+        
Sbjct:   139 TAITFIALYLIALGTGGIKPCVSSFGADQFDDTDEKEKESKSSFFNWFYFVINVGAMIAS 198

Query:   189 XXXXYIQDNVGWNWGLGIPTVAMFLSIIAFVFGYPLYRNLNPAGSPFVRLMQVCVAAFRK 248
                 +IQ NVGW WGLG+PTVAM ++++ F  G   YR   P GSP  R++QV VA+ RK
Sbjct:   199 SVLVWIQMNVGWGWGLGVPTVAMAIAVVFFFAGSNFYRLQKPGGSPLTRMLQVIVASCRK 258

Query:   249 RNLDMVSDPNVLYQNEELDASICLDGKLLHTKHMKFLDKAAIVTEEDD---IKSPNLWRL 305
               + +  D ++LY+N++ ++SI    KL HTK + F DKAA+ TE D+    KS + W+L
Sbjct:   259 SKVKIPEDESLLYENQDAESSIIGSRKLEHTKILTFFDKAAVETESDNKGAAKSSS-WKL 317

Query:   306 NTVHRVEELKSVIRMGPIWASGILLITAYAQQGTFSLQQAKSMDRHLTKSFQIPAGSMSV 365
              TV +VEELK++IR+ PIWA+GI+  + Y+Q GT  + Q  ++D+H+  +F+IP+ S+S+
Sbjct:   318 CTVTQVEELKALIRLLPIWATGIVFASVYSQMGTVFVLQGNTLDQHMGPNFKIPSASLSL 377

Query:   366 FTMVSMLSTIALYDRIIIPVARKFTGLDRGITFLHRMGIGFVISVLATLVAGFVEMKRKQ 425
             F  +S+L    +YD++I+P ARK+TG +RG T L R+GIG VIS+ + + AG +E+ R  
Sbjct:   378 FDTLSVLFWAPVYDKLIVPFARKYTGHERGFTQLQRIGIGLVISIFSMVSAGILEVARLN 437

Query:   426 AALAHGLVDKPHIIIPISVLWLVPQYSLHGIAEAFMSVGHLEFLYDQAPESMRSTATALF 485
                 H L ++    IP+++ W VPQY L G AE F  +G LEF YDQAP++MRS  +AL 
Sbjct:   438 YVQTHNLYNEE--TIPMTIFWQVPQYFLVGCAEVFTFIGQLEFFYDQAPDAMRSLCSALS 495

Query:   486 WTANSIGNYVSTLLVTLVHKFSAGPNGSNWLPDNNLNKGKLEYFYWLITLLQVVNVIYYF 545
              TA + GNY+ST LVTLV K +       W+   NLN G L+YF+WL+  L  +N + Y 
Sbjct:   496 LTAIAFGNYLSTFLVTLVTKVTRSGGRPGWIA-KNLNNGHLDYFFWLLAGLSFLNFLVYL 554

Query:   546 FCAKIYTFKPIQMH 559
             + AK YT+K    H
Sbjct:   555 WIAKWYTYKKTTGH 568

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0009860 "pollen tube growth" evidence=IMP

GO:0042936 "dipeptide transporter activity" evidence=IDA

GO:0042938 "dipeptide transport" evidence=IDA

TAIR|locus:2018032 PTR6 "peptide transporter 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 1128 (402.1 bits), Expect = 2.2e-114, P = 2.2e-114
 Identities = 238/551 (43%), Positives = 333/551 (60%)

Query:     6 GSHVNRKK-GGIITMPFIFANEVCEKLAVVGFHANMISYLTTQLHMPLTKAANTLTNFGG 64
             G+  ++KK G     PFI  NE CE+LA  G   N+I+Y T++LH     AA+ +  + G
Sbjct:    45 GNPPSKKKTGNWKACPFILGNECCERLAYYGIAKNLITYYTSELHESNVSAASDVMIWQG 104

Query:    65 TGSLTPLIGAFVADTYAGRFWTITVASIIYQIGMFSLTLSAILPQLRPPPCQG--DQVCK 122
             T  +TPLIGA +AD+Y GR+WTI   S IY IGM  LTLSA LP L+P  C G    +C 
Sbjct:   105 TCYITPLIGAVIADSYWGRYWTIASFSAIYFIGMALLTLSASLPVLKPAACAGVAAALCS 164

Query:   123 EADTXXXXXXXXXXXXXXXXXXXXRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGX 182
              A T                    +PCV +FGADQFD+TDP++  +   +FNW+YF +  
Sbjct:   165 PATTVQYAVFFTGLYLIALGTGGIKPCVSSFGADQFDDTDPRERVRKASFFNWFYFSINI 224

Query:   183 XXXXXXXXXXYIQDNVGWNWGLGIPTVAMFLSIIAFVFGYPLYRNLNPAGSPFVRLMQVC 242
                       ++Q+NVGW  G  IPTV M +SI +F  G PLYR   P GSP  R+ QV 
Sbjct:   225 GSFISSTLLVWVQENVGWGLGFLIPTVFMGVSIASFFIGTPLYRFQKPGGSPITRVCQVL 284

Query:   243 VAAFRKRNLDMVSDPNVLYQNEELDASICLDGKLLHTKHMKFLDKAAIVTEEDDIKS--- 299
             VAA+RK  L++  D + LY+  E ++ I    K+ HT   KFLDKAA+++E +  KS   
Sbjct:   285 VAAYRKLKLNLPEDISFLYETREKNSMIAGSRKIQHTDGYKFLDKAAVISEYES-KSGAF 343

Query:   300 PNLWRLNTVHRVEELKSVIRMGPIWASGILLITAYAQQGTFSLQQAKSMDRHLTKSFQIP 359
              N W+L TV +VEE+K++IRM PIWASGI+    Y+Q  T  +QQ +SM+R + +SF+IP
Sbjct:   344 SNPWKLCTVTQVEEVKTLIRMFPIWASGIVYSVLYSQISTLFVQQGRSMNR-IIRSFEIP 402

Query:   360 AGSMSVFTMVSMLSTIALYDRIIIPVARKFTGLDRGITFLHRMGIGFVISVLATLVAGFV 419
               S  VF  + +L +I +YDR ++P  R+FTG+ +G+T L RMGIG  +SVL+   A  V
Sbjct:   403 PASFGVFDTLIVLISIPIYDRFLVPFVRRFTGIPKGLTDLQRMGIGLFLSVLSIAAAAIV 462

Query:   420 EMKRKQAALAHGLVDKPHIIIPISVLWLVPQYSLHGIAEAFMSVGHLEFLYDQAPESMRS 479
             E  R Q  LA   V        +S+ W +PQY L GIAE F  +G +EF YD++P++MRS
Sbjct:   463 ETVRLQ--LAQDFV-------AMSIFWQIPQYILMGIAEVFFFIGRVEFFYDESPDAMRS 513

Query:   480 TATALFWTANSIGNYVSTLLVTLVHKFSAGPNGSNWLPDNNLNKGKLEYFYWLITLLQVV 539
               +AL     ++G+Y+S+L++TLV  F+A      W+PD+ LNKG L+YF+WL+  L +V
Sbjct:   514 VCSALALLNTAVGSYLSSLILTLVAYFTALGGKDGWVPDD-LNKGHLDYFFWLLVSLGLV 572

Query:   540 NV-IYYFFCAK 549
             N+ +Y   C K
Sbjct:   573 NIPVYALICVK 583

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=ISS

GO:0009705 "plant-type vacuole membrane" evidence=IDA

TAIR|locus:2041140 PTR4 "peptide transporter 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 536 (193.7 bits), Expect = 1.5e-104, Sum P(2) = 1.5e-104
 Identities = 110/262 (41%), Positives = 168/262 (64%)

Query:   292 TEEDDIKSPNLWRLNTVHRVEELKSVIRMGPIWASGILLITAYAQQGTFSLQQAKSMDRH 351
             T+E D  + N W+L TV +VEE+K ++R+ PIWASGI+    ++Q  T  +QQ + M R 
Sbjct:   287 TDEGDANT-NPWKLCTVTQVEEVKILLRLVPIWASGIIFSVLHSQIYTLFVQQGRCMKRT 345

Query:   352 LTKSFQIPAGSMSVFTMVSMLSTIALYDRIIIPVARKFTGLDRGITFLHRMGIGFVISVL 411
             +   F+IP  ++ +F   S+L ++ +YDR+I+P+ R+FTGL +G T L RMGIG  +SVL
Sbjct:   346 IGL-FEIPPATLGMFDTASVLISVPIYDRVIVPLVRRFTGLAKGFTELQRMGIGLFVSVL 404

Query:   412 ATLVAGFVEMKRKQAALAHGLVDKPHIIIPISVLWLVPQYSLHGIAEAFMSVGHLEFLYD 471
             +   A  VE  R Q A    LV+   I+ P+++ W +PQY L G A  F  VG +EF Y+
Sbjct:   405 SLTFAAIVETVRLQLARDLDLVESGDIV-PLNIFWQIPQYFLMGTAGVFFFVGRIEFFYE 463

Query:   472 QAPESMRSTATALFWTANSIGNYVSTLLVTLVHKFSAGPNGSNWLPDNNLNKGKLEYFYW 531
             Q+P+SMRS  +A      ++GNY+S+L++TLV  + +G +   W+P +N+N G L+YF+W
Sbjct:   464 QSPDSMRSLCSAWALLTTTLGNYLSSLIITLV-AYLSGKDC--WIPSDNINNGHLDYFFW 520

Query:   532 LITLLQVVNV-IYYFFCAKIYT 552
             L+  L  VN+ ++ FF  K YT
Sbjct:   521 LLVSLGSVNIPVFVFFSVK-YT 541

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=ISS

GO:0009705 "plant-type vacuole membrane" evidence=IDA

TAIR|locus:2196800 NRT1.7 "nitrate transporter 1.7" [Arabidopsis thaliana (taxid:3702)]

 Score = 1022 (364.8 bits), Expect = 3.7e-103, P = 3.7e-103
 Identities = 226/578 (39%), Positives = 328/578 (56%)

Query:     9 VNRKKGGIITMPFIFANEVCEKLAVVGFHANMISYLTTQLHMPLTKAANTLTNFGGTGSL 68
             V +K GG   + FI  NE  E+L  +G  AN + YLT   H+    AAN +  + G  +L
Sbjct:    48 VEKKPGGWRAVSFILGNETLERLGSIGLLANFMVYLTKVFHLEQVDAANVINIWSGFTNL 107

Query:    69 TPLIGAFVADTYAGRFWTITVASIIYQIGMFSLTLSAILPQLRPPPCQG-DQV-CKEADT 126
             TPL+GA+++DTY GRF TI  AS    +G+ ++TL+A  PQL P  C   D + C   + 
Sbjct:   108 TPLVGAYISDTYVGRFKTIAFASFATLLGLITITLTASFPQLHPASCNSQDPLSCGGPNK 167

Query:   127 XXXXXXXXXXXXXXXXXXXXRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGXXXXX 186
                                 RPC + FG DQFD+   +       +FNWYY         
Sbjct:   168 LQIGVLLLGLCFLSVGSGGIRPCSIPFGVDQFDQRTEEGVKGVASFFNWYYMTFTVVLII 227

Query:   187 XXXXXXYIQDNVGWNWGLGIPTVAMFLSIIAFVFGYPLYRNLNPAGSPFVRLMQVCVAAF 246
                   YIQD V W  G  IPT  M L+++ F  G   Y  + P GS F  + QV VAA 
Sbjct:   228 TQTVVVYIQDQVSWIIGFSIPTGLMALAVVMFFAGMKRYVYVKPEGSIFSGIAQVIVAAR 287

Query:   247 RKRNLDMVS--DPNVLYQNEELDASICLDGKLLHTKHMKFLDKAAIVTEED-DIKSP--N 301
             +KR L + +  D  V Y +  + +S+    KL  +   + LDKAA+V E D   + P  +
Sbjct:   288 KKRKLKLPAEDDGTVTYYDPAIKSSVL--SKLHRSNQFRCLDKAAVVIEGDLTPEGPPAD 345

Query:   302 LWRLNTVHRVEELKSVIRMGPIWASGILLITAYAQQGTFSLQQAKSMDRHLTKSFQIPAG 361
              WRL +V  VEE+K +IR+ PIW++GI+ + A   QGTF++ QA  MDR+L   F+IPAG
Sbjct:   346 KWRLCSVQEVEEVKCLIRIVPIWSAGIISLAAMTTQGTFTVSQALKMDRNLGPKFEIPAG 405

Query:   362 SMSVFTMVSMLSTIALYDRIIIPVARKFTGLDRGITFLHRMGIGFVISVLATLVAGFVEM 421
             S+SV +++++   +  YDR+ +P  R+ TG   GIT L R+G G V ++ + +VAG VE 
Sbjct:   406 SLSVISLLTIGIFLPFYDRVFVPFMRRITGHKSGITLLQRIGTGIVFAIFSMIVAGIVER 465

Query:   422 KRKQAALAHGLVDKPHIIIPISVLWLVPQYSLHGIAEAFMSVGHLEFLYDQAPESMRSTA 481
              R+  ++  G  D P  + P+SV WL PQ  L G+ EAF  +G +EF   Q PE MRS A
Sbjct:   466 MRRIRSINAG--D-PTGMTPMSVFWLSPQLILMGLCEAFNIIGQIEFFNSQFPEHMRSIA 522

Query:   482 TALFWTANSIGNYVSTLLVTLVHKFSAGPNGSNWLPDNNLNKGKLEYFYWLITLLQVVNV 541
              +LF  + +  +Y+S+ LVT+VHKFS G +  +WL + NLN GKL+YFY+LI +L VVN+
Sbjct:   523 NSLFSLSFAGSSYLSSFLVTVVHKFSGGHDRPDWL-NKNLNAGKLDYFYYLIAVLGVVNL 581

Query:   542 IYYFFCAKIYTFK---PIQMHQKGGDSSSSEGVELDNK 576
             +Y+++CA+ Y +K   PI+  +   +  SS+ VE+ +K
Sbjct:   582 VYFWYCARGYRYKVGLPIEDFE---EDKSSDDVEMTSK 616

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0015706 "nitrate transport" evidence=IMP

GO:0080054 "low affinity nitrate transmembrane transporter activity" evidence=IDA

GO:0080055 "low affinity nitrate transport" evidence=IDA

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA

TAIR|locus:2035005 NRT1.9 "nitrate transporter 1.9" [Arabidopsis thaliana (taxid:3702)]

 Score = 983 (351.1 bits), Expect = 5.0e-99, P = 5.0e-99
 Identities = 212/561 (37%), Positives = 312/561 (55%)

Query:    19 MPFIFANEVCEKLAVVGFHANMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVAD 78
             MPFI  NE  EKL +VG  +N++ YLTT  +M    AA  +  +GGT +   ++ AF+ D
Sbjct:    26 MPFIIGNETFEKLGIVGSSSNLVIYLTTVFNMKSITAAKVVNIYGGTSNFGTIVAAFLCD 85

Query:    79 TYAGRFWTITVASIIYQIGMFSLTLSAILPQLRPPPCQGD--QVCKEADTXXXXXXXXXX 136
             +Y GR+ T++ A I   +G  ++ L+A++  L P  C  +   VC               
Sbjct:    86 SYFGRYKTLSFAMIACFLGSVAMDLTAVIHPLHPAQCAKEIGSVCNGPSIGQIMFLAGAM 145

Query:   137 XXXXXXXXXXRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGXXXXXXXXXXXYIQD 196
                       RPC + FGADQFD    +       +FNWY+F              Y+Q 
Sbjct:   146 VLLVIGAGGIRPCNLPFGADQFDPKTKEGKRGIESFFNWYFFTFTFAQMVSLTLIVYVQS 205

Query:   197 NVGWNWGLGIPTVAMFLSIIAFVFGYPLYRNLNPAGSPFVRLMQVCVAAFRKRNLDMVSD 256
             NV W+ GL IP + M L  I F  G  LY  +  +GSP   + +V V A +KR L  V  
Sbjct:   206 NVSWSIGLAIPAILMLLGCIIFFAGSKLYVKVKASGSPIHSITRVIVVAIKKRRLKPVG- 264

Query:   257 PNVLYQNEELDASICLDGKLLHTKHMKFLDKAAIVTEEDDIK---SP-NLWRLNTVHRVE 312
             PN LY      AS   + KL HT+  +FLDK+AI T++D +    SP + W+L ++ +VE
Sbjct:   265 PNELYN---YIASDFKNSKLGHTEQFRFLDKSAIQTQDDKLNKDGSPVDAWKLCSMQQVE 321

Query:   313 ELKSVIRMGPIWASGILLITAYAQQGTFSLQQAKSMDRHLTK-SFQIPAGSMSVFTMVSM 371
             E+K VIR+ P+W S  L   AY QQ T+++ Q+   DR L   SFQIPAGS +VF M+ M
Sbjct:   322 EVKCVIRVLPVWLSAALFYLAYIQQTTYTIFQSLQSDRRLGPGSFQIPAGSYTVFLMLGM 381

Query:   372 LSTIALYDRIIIPVARKFTGLDRGITFLHRMGIGFVISVLATLVAGFVEMKRKQAALAH- 430
                I +YDR+++P  RK+TG D GIT L R+G G  + + + +V+  VE  R++ AL   
Sbjct:   382 TIFIPIYDRVLVPFLRKYTGRDGGITQLQRVGAGLFLCITSMMVSAIVEQYRRKVALTKP 441

Query:   431 --GLVDKPHIIIPISVLWLVPQYSLHGIAEAFMSVGHLEFLYDQAPESMRSTATALFWTA 488
               GL  +   I  +S +WL+PQ  L GIA+A   VG +EF Y Q PE+MRS A +L++  
Sbjct:   442 TLGLAPRKGAISSMSGMWLIPQLVLMGIADALAGVGQMEFYYKQFPENMRSFAGSLYYCG 501

Query:   489 NSIGNYVSTLLVTLVHKFSAGPNGSNWLPDNNLNKGKLEYFYWLITLLQVVNVIYYFFCA 548
               + +Y+ST L++ VH  + G +G +WLP++ LNKG+LEYFY+L+  +  +N+ Y+   +
Sbjct:   502 IGLASYLSTFLLSAVHDTTEGFSGGSWLPED-LNKGRLEYFYFLVAGMMTLNLAYFLLVS 560

Query:   549 KIYTFKPIQMHQKGGDSSSSE 569
               Y +K +    K  D +S+E
Sbjct:   561 HWYRYKDVVAKDKDMDKTSAE 581

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0010233 "phloem transport" evidence=IMP

GO:0015112 "nitrate transmembrane transporter activity" evidence=IDA

GO:0090408 "phloem nitrate loading" evidence=IMP

GO:0006826 "iron ion transport" evidence=RCA

GO:0010106 "cellular response to iron ion starvation" evidence=RCA

GO:0010167 "response to nitrate" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

TAIR|locus:2093442 AT3G16180 [Arabidopsis thaliana (taxid:3702)]

 Score = 974 (347.9 bits), Expect = 4.5e-98, P = 4.5e-98
 Identities = 215/553 (38%), Positives = 313/553 (56%)

Query:    11 RKKGGIITMPFIFANEVCEKLAVVGFHANMISYLTTQLHMPLTKAANTLTNFGGTGSLTP 70
             R KGG++TMPFI ANE  EK+A  G   NMI YL +   + L K    L  +    +  P
Sbjct:    22 RTKGGLLTMPFIIANEGFEKVASYGLLQNMILYLMSDYRLGLVKGQTVLFMWVAATNFMP 81

Query:    71 LIGAFVADTYAGRFWTITVASIIYQIGMFSLTLSAILPQLRPPPC--QGDQVCKEADTXX 128
             L+GAF++D+Y GRF TI +AS+   +GM  L L+A+LPQ++P PC       C  A +  
Sbjct:    82 LVGAFLSDSYLGRFLTIVIASLSSLLGMVVLWLTAMLPQVKPSPCVATAGTNCSSATSSQ 141

Query:   129 XXXXXXXXXXXXXXXXXXRPCVVAFGADQFDETD-PKQATKTWKYFNWYYFVMGXXXXXX 187
                               RPC +AFGADQ D  + PK       +F WYY          
Sbjct:   142 LALLYTAFALISIGSGGIRPCSLAFGADQLDNKENPKNERVLESFFGWYYASSSVAVLIA 201

Query:   188 XXXXXYIQDNVGWNWGLGIPTVAMFLSIIAFVFGYPLYRNLNPAGSPFVRLMQVCVAAFR 247
                  YIQD++GW  G GIP + M L+   FVF  PLY   + + S F  L QV  AA+ 
Sbjct:   202 FTVIVYIQDHLGWKIGFGIPAILMLLAGFLFVFASPLYVKRDVSKSLFTGLAQVVAAAYV 261

Query:   248 KRNLDMVSDPNVLYQNEELDASICL-DGKL-LHTKHMKFLDKA-AIVTEEDDIKSPNL-- 302
             KRNL +   P+    ++  D    L D +L   +  ++FL+KA AI   ++D+ S  L  
Sbjct:   262 KRNLTL---PD---HHDSRDCYYRLKDSELKAPSDKLRFLNKACAISNRDEDLGSDGLAL 315

Query:   303 --WRLNTVHRVEELKSVIRMGPIWASGILLITAYAQQGTFSLQQAKSMDRHLTKS--FQI 358
               WRL T  +VE+LK+++++ P+W++GI++ +    Q +F L QAKSMDR L+ +  FQI
Sbjct:   316 NQWRLCTTDQVEKLKALVKVIPVWSTGIMM-SINVSQNSFQLLQAKSMDRRLSSNSTFQI 374

Query:   359 PAGSMSVFTMVSMLSTIALYDRIIIPVARKFTGLDRGITFLHRMGIGFVISVLATLVAGF 418
             PAGS  +FT+++++S + LYDR I+P+A K  G    +    RMG+G  IS LA  V+  
Sbjct:   375 PAGSFGMFTIIALISWVVLYDRAILPLASKIRGRPVRVNVKIRMGLGLFISFLAMAVSAT 434

Query:   419 VEMKRKQAALAHGLVDKPHIIIPISVLWLVPQYSLHGIAEAFMSVGHLEFLYDQAPESMR 478
             VE  R++ A++ GL +  +  + IS +WLVPQY LHG+AEA   +G  EF Y + P+SM 
Sbjct:   435 VEHYRRKTAISQGLANDANSTVSISAMWLVPQYVLHGLAEALTGIGQTEFFYTEFPKSMS 494

Query:   479 STATALFWTANSIGNYVSTLLVTLVHKFSAGPNGSNWLPDNNLNKGKLEYFYWLITLLQV 538
             S A +LF    ++ N ++++++  V   S   N S W+ DN +NKG  +Y+YW++ +L  
Sbjct:   495 SIAASLFGLGMAVANILASVILNAVKNSSKQGNVS-WIEDN-INKGHYDYYYWVLAILSF 552

Query:   539 VNVIYYFFCAKIY 551
             VNVIYY  C+  Y
Sbjct:   553 VNVIYYVVCSWSY 565

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2161438 PTR3 "peptide transporter 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 968 (345.8 bits), Expect = 2.0e-97, P = 2.0e-97
 Identities = 202/554 (36%), Positives = 309/554 (55%)

Query:     6 GSHVNRK-KGGIITMPFIFANEVCEKLAVVGFHANMISYLTTQLHMPLTKAANTLTNFGG 64
             G+ V R  +G      F+   EV E++A  G  +N+  Y+TT+LH    K++N +TN+ G
Sbjct:    20 GNPVRRSIRGRWKACSFVVVYEVFERMAYYGISSNLFIYMTTKLHQGTVKSSNNVTNWVG 79

Query:    65 TGSLTPLIGAFVADTYAGRFWTITVASIIYQIGMFSLTLSAILPQLRPPPCQGDQV--CK 122
             T  LTP++GA+V D   GR+ T  ++  IY  GM  LTLS  +P ++PP C    V  C+
Sbjct:    80 TSWLTPILGAYVGDALLGRYITFVISCAIYFSGMMVLTLSVTIPGIKPPECSTTNVENCE 139

Query:   123 EADTXXXXXXXXXXXXXXXXXXXXRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGX 182
             +A                      +P +   GADQFD  DPK+ T+   +FNW+ F +  
Sbjct:   140 KASVLQLAVFFGALYTLAIGTGGTKPNISTIGADQFDVFDPKEKTQKLSFFNWWMFSIFF 199

Query:   183 XXXXXXXXXXYIQDNVGWNWGLGIPTVAMFLSIIAFVFGYPLYRNLNPAGSPFVRLMQVC 242
                       Y+QDNVGW  G G+PT+ + +SI  F+ G P YR+  P GSPF ++ +V 
Sbjct:   200 GTLFANTVLVYVQDNVGWTLGYGLPTLGLAISITIFLLGTPFYRHKLPTGSPFTKMARVI 259

Query:   243 VAAFRKRNLDMVSDPNVLYQNEELDASICLDGKL-LH-TKHMKFLDKAAIVTEEDDIKSP 300
             VA+FRK N  M  D    ++   L+      G   +H T  ++FLD+A++ T  +     
Sbjct:   260 VASFRKANAPMTHDITSFHELPSLEYE--RKGAFPIHPTPSLRFLDRASLKTGTN----- 312

Query:   301 NLWRLNTVHRVEELKSVIRMGPIWASGILLITAYAQQGTFSLQQAKSMDRHLTKSFQIPA 360
             + W L T   VEE K ++RM P+     +     AQ  T  ++Q  ++DR +T SF IP 
Sbjct:   313 HKWNLCTTTEVEETKQMLRMLPVLFITFVPSMMLAQINTLFVKQGTTLDRKVTGSFSIPP 372

Query:   361 GSMSVFTMVSMLSTIALYDRIIIPVARKFTGLDRGITFLHRMGIGFVISVLATLVAGFVE 420
              S+S F  +SML +I LYDR+ + + RKFTG  RGIT L RMGIG +  +L  +VA   E
Sbjct:   373 ASLSGFVTLSMLISIVLYDRVFVKITRKFTGNPRGITLLQRMGIGLIFHILIMIVASVTE 432

Query:   421 MKRKQAALAHGLVDKPHIIIPISVLWLVPQYSLHGIAEAFMSVGHLEFLYDQAPESMRST 480
               R + A  HGL+ +  + +P+++  L+PQ+ L G+A++F+ V  LEF YDQAPESM+S 
Sbjct:   433 RYRLKVAADHGLIHQTGVKLPLTIFALLPQFVLMGMADSFLEVAKLEFFYDQAPESMKSL 492

Query:   481 ATALFWTANSIGNYVSTLLVTLVHKFSAGPNGSNWLPDNNLNKGKLEYFYWLITLLQVVN 540
              T+   T+ +IGN++S+ L++ V + +    G  W+  NNLN+ +L+Y+Y    +L +VN
Sbjct:   493 GTSYSTTSLAIGNFMSSFLLSTVSEITK-KRGRGWIL-NNLNESRLDYYYLFFAVLNLVN 550

Query:   541 VIYYFFCAKIYTFK 554
              + +    K Y ++
Sbjct:   551 FVLFLVVVKFYVYR 564

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA;ISS;RCA

GO:0016020 "membrane" evidence=IEA;ISS

GO:0009611 "response to wounding" evidence=IEP

GO:0042538 "hyperosmotic salinity response" evidence=IMP

GO:0043201 "response to leucine" evidence=IEP

GO:0080052 "response to histidine" evidence=IEP

GO:0080053 "response to phenylalanine" evidence=IEP

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0042742 "defense response to bacterium" evidence=IMP

GO:0042936 "dipeptide transporter activity" evidence=IGI

GO:0042937 "tripeptide transporter activity" evidence=IGI

GO:0042938 "dipeptide transport" evidence=IGI

GO:0042939 "tripeptide transport" evidence=IGI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9SX20	PTR18_ARATH	No assigned EC number	0.7789	0.9965	0.9647	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	577
pfam00854	372	pfam00854, PTR2, POT family	1e-92
COG3104	498	COG3104, PTR2, Dipeptide/tripeptide permease [Amin	2e-33
TIGR00926	641	TIGR00926, 2A1704, Peptide:H+ symporter (also tran	4e-29
PRK15462	493	PRK15462, PRK15462, dipeptide/tripeptide permease	4e-07
TIGR00926	641	TIGR00926, 2A1704, Peptide:H+ symporter (also tran	2e-05
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	6e-05
TIGR00924	475	TIGR00924, yjdL_sub1_fam, amino acid/peptide trans	2e-04

>gnl|CDD|216153 pfam00854, PTR2, POT family

 Score =  288 bits (739), Expect = 1e-92
 Identities = 136/409 (33%), Positives = 196/409 (47%), Gaps = 40/409 (9%)

Query: 84  FWTITVASIIYQIGMFSLTLSAILPQLRPPPCQGDQVCKEADTGQLAILYASLLLAALGS 143
           F TI + SIIY IG   LTL AI P L P               Q+A+ Y  L L ALG+
Sbjct: 1   FKTILLGSIIYAIGHVLLTLGAIPPSLSPV--------------QVALFYIGLYLIALGT 46

Query: 144 GGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAVLVAVTVLVYIQDNVGWNWG 203
           GGI+P V AFGADQFDET   +      +F+W+YF + A  L+A  +  Y+Q NVG+  G
Sbjct: 47  GGIKPNVSAFGADQFDETQDPR---RDGFFSWFYFSINAGSLIATIITPYLQQNVGYPLG 103

Query: 204 LGIPTVAMFLSIIAFVFGYPLYRNLNPAGS--PFVRLMQVCVAAFRKRNLDMVSDPNVLY 261
            G+P V M L+++ F+ G   Y+   P G     V +  +  AA + R L +  D + LY
Sbjct: 104 FGLPAVGMLLALLVFLLGSRRYKKKAPPGGSPFTVCIAFIITAAGKNRKLQLPKDSHWLY 163

Query: 262 QNEELDASICLDGKLLHTKHMKFLDKAAIVTEEDDIKSPNLWRLN-TVHRVEELKSVIRM 320
              E      +    +HT+    +                 W L      V  L++++ M
Sbjct: 164 WALEKYNKRSISQTKVHTRVA-VIFIPLPKF----------WALFDQQGSVWLLQAILLM 212

Query: 321 GPIWASGILLITAYAQQGTFSLQQAKSMDRHLTKSFQIPAGSMSVFTMVSMLSTIALYDR 380
            PIWA  IL    + Q  T  ++Q  +MDR +   F+IP  S   F  +++L  + + D 
Sbjct: 213 LPIWAFWILPDQMWTQLATLIVRQVPTMDRIIYPLFEIPPASFQSFNPLAVLILLPILDF 272

Query: 381 IIIPVARKFTGLDRGITFLHRMGIGFVISVLATLVAGFVEMKRKQAALAHGLVDKPHIII 440
           ++ P+ R    L RG+T   R G+G  I ++A  +A  VE KR + A A GL       +
Sbjct: 273 LVYPLLR----LKRGLTLPQRFGLGMFILIVANFLAAIVEAKRPRYAAALGLTSPG-WTV 327

Query: 441 PISVLWLVPQYSLHGIAEAFMSVGHLEFLYDQAPESMRSTATALFWTAN 489
           P+ +LW +P+  + G+  A    G LEF  D  P SM S  T L   A 
Sbjct: 328 PLFILWSLPELFISGVGLA----GALEFAPDALPSSMMSLWTLLSAAAA 372

The POT (proton-dependent oligopeptide transport) family all appear to be proton dependent transporters. Length = 372

>gnl|CDD|225646 COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism]

 Score =  133 bits (337), Expect = 2e-33
 Identities = 101/522 (19%), Positives = 182/522 (34%), Gaps = 75/522 (14%)

Query: 1   MEEKGGSHVNRKKGGIITMPF-IFANEVCEKLAVVGFHANMISYLTTQ----LHMPLTKA 55
             E+  + +  K  G     + IF  E+ E+ +  G  A +I YL  Q    L    T A
Sbjct: 4   PTEEENTTLEMKFFGQPRGLYLIFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHA 63

Query: 56  ANTLTNFGGTGSLTPLIGAFVADTYAGRFWTITVASIIYQIGMFSLTLSAILPQLRPPPC 115
               + +G    LTP+IG ++AD   G   TI + +I+  IG   L +S+          
Sbjct: 64  TGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISS---------- 113

Query: 116 QGDQVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNW 175
                           LY  L L  +G+G  +P + +   + + + DP++       F  
Sbjct: 114 ----------VSGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPRRDGG----FTL 159

Query: 176 YYFVMGAAVLVAVTVLVYIQDNVGWNWGLGIPTVAMFLSIIAFVFGYPLYRNL----NPA 231
           +Y  +    L+A  +   +  N GW+ G G+  V M + ++ F+ G    + +    +P 
Sbjct: 160 FYMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMIIGLVIFLLGRRHVKGIGGVPDPN 219

Query: 232 GSPFVRLMQVCVAAFRKRNLDMVSDPNVLYQNEELDASICLDGKLLHTKHMKFLDKAAIV 291
              F  L+ V         +       +L QN          G LL           +I+
Sbjct: 220 PLSFNFLLPVLGGLVVM--ILAALLTLLLNQNT-------FSGVLL---------VISIL 261

Query: 292 TEEDDIKSPNLWRLNTVHRVEELKSVIRMGPIWASGILLITAYAQQGTFSLQQAKSMDRH 351
                               +E + ++   P++   ++    Y Q G+     A      
Sbjct: 262 IAIIYFAEAFRSPKVF----DERRRLLAAIPLFLFAVIFWALYEQMGSSLNLYADRNVNR 317

Query: 352 LTKSFQIPAGSMSVFTMVSMLSTIALYDRIIIPVARKFTGLDRGITFLHRMGIGFVISVL 411
               F++P           ++    +   +   + R        I F     +G +++ L
Sbjct: 318 QIFGFEVPPAWFQSLNPFFIILFSPILAALWTKLGRGNKQPSTPIKF----ALGLILAGL 373

Query: 412 ATLVAGFVEMKRKQAALAHGLVDKPHIIIPISVLWLVPQYSLHGIAEAFMSVGHLEFLYD 471
             L+     +         GLV         SV WLV  Y L    E F+S   L  +  
Sbjct: 374 GFLILLLAGI---WFGGPSGLV---------SVWWLVLSYVLQSFGELFISPVGLSMVTK 421

Query: 472 QAPESMRSTATALFWTANSIGN----YVSTLLVTLVHKFSAG 509
            AP +++S   A+++   + G      V+ L       ++A 
Sbjct: 422 LAPPALKSFIMAMWFLTVAAGQTLGGQVAGLTAVTDPAYTAF 463

Length = 498

>gnl|CDD|233190 TIGR00926, 2A1704, Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

 Score =  121 bits (306), Expect = 4e-29
 Identities = 100/404 (24%), Positives = 160/404 (39%), Gaps = 68/404 (16%)

Query: 33  VVGFHANMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADTYAGRFWTITVASI 92
             G    ++ YL   L      A N    F     LTPLIGA +AD++ G+F TI   S+
Sbjct: 3   YYGMKTILVLYLLNFLGWNEDTATNIYHTFTYLCYLTPLIGALIADSWLGKFKTILYLSL 62

Query: 93  IYQIGMFSLTLSAILPQLRPPPCQGDQVCKEADTGQLAILYASLLLAALGSGGIRPCVVA 152
           +Y +G    +L A+ P L  P                A+    L L ALG+GGI+PCV A
Sbjct: 63  VYVVGHALASLGAV-PSLGHPL-------------HDALSLVGLALIALGTGGIKPCVSA 108

Query: 153 FGADQFDETDPKQATKTWKYFNWYYFVMGAAVLVAVTVLVYIQDNVG-------WNWGLG 205
           FG DQF+E   +Q +  +++F+++YF + A  L +  +   ++ +VG       +    G
Sbjct: 109 FGGDQFEE---RQLSLRFRFFSFFYFAINAGSLFSTIITPILRGDVGCFGCQDCFPLAFG 165

Query: 206 IPTVAMFLSIIAFVFGYPLYRNLNPAGSPFVRLMQVCVAAFRKRNLDMVSDPNVLYQNEE 265
           +P + M L++I F  G  +Y+   P G+   ++M+  V A +KR      D   L+    
Sbjct: 166 VPGILMTLALIVFSMGSKMYKKKPPVGNIVSKVMKCIVFALKKRFRTRSEDWPRLH---- 221

Query: 266 LDASICLDGKLLHTKHMKFLDKAAIVTEEDDIKSPNLWRLNTVHRVEELKSVIRMGPIWA 325
                             +LD AA       I+S               K ++R+  ++ 
Sbjct: 222 ------------------WLDWAAPKYLIRMIRS--------------TKRLLRVLFLF- 248

Query: 326 SGILLITAYAQQGTFSLQQAKSMDRHLTKS--FQIPAGSMSVFTMVSMLSTIALYDRIII 383
             I L   +A       +      R       F I    M     V+ L  + L      
Sbjct: 249 --IPLPMFWALFDQQGSRWTLQATRMDGDVGLFPIQPDQMQA---VNPLLVLILVPIFDY 303

Query: 384 PVARKFTGLDRGITFLHRMGIGFVISVLATLVAGFVEMKRKQAA 427
            V           T L +M +G +++ LA  VA  ++ K     
Sbjct: 304 VVYPALAKCGTRFTSLRKMAVGMLLAALAFAVAALLQNKINPTL 347

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 641

>gnl|CDD|237971 PRK15462, PRK15462, dipeptide/tripeptide permease D; Provisional

 Score = 52.6 bits (126), Expect = 4e-07
 Identities = 46/201 (22%), Positives = 79/201 (39%), Gaps = 25/201 (12%)

Query: 21  FIFANEVCEKLAVVGFHANMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADTY 80
           ++ A ++ E  +  G  A +I YLT QL      A    + +     +TP++G F+AD  
Sbjct: 13  YVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKV 72

Query: 81  AGRFWTITVASIIYQIGMFSLTLSAILPQLRPPPCQGDQVCKEADTGQLAILYASLLLAA 140
            G    + + +++  IG   L  S I P                     + LY SL +  
Sbjct: 73  LGNRMAVMLGALLMAIGHVVLGASEIHP---------------------SFLYLSLAIIV 111

Query: 141 LGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAVLVAVTVLVYIQDNVGW 200
            G G  +  V     + ++ TDP++       F+  Y       ++A     Y Q+   W
Sbjct: 112 CGYGLFKSNVSCLLGELYEPTDPRRDGG----FSLMYAAGNVGSIIAPIACGYAQEEYSW 167

Query: 201 NWGLGIPTVAMFLSIIAFVFG 221
             G G+  V M   ++ F+ G
Sbjct: 168 AMGFGLAAVGMIAGLVIFLCG 188

Length = 493

>gnl|CDD|233190 TIGR00926, 2A1704, Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

 Score = 47.5 bits (113), Expect = 2e-05
 Identities = 26/66 (39%), Positives = 38/66 (57%), Gaps = 4/66 (6%)

Query: 442 ISVLWLVPQYSLHGIAEAFMSVGHLEFLYDQAPESMRSTATALFWTANSIGNYVSTLLVT 501
           +S+LW +PQY L    E   SV  LEF Y QAP +M+S   AL+    +IGN    ++V 
Sbjct: 550 VSILWQLPQYVLATAGEVMFSVTGLEFSYSQAPPNMKSVLQALWLLTVAIGN----IIVL 605

Query: 502 LVHKFS 507
           ++ +F 
Sbjct: 606 IIAEFE 611

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 641

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 45.4 bits (108), Expect = 6e-05
 Identities = 31/187 (16%), Positives = 66/187 (35%), Gaps = 29/187 (15%)

Query: 38  ANMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADTYAGRFWTITVASIIYQIG 97
           +  +  L   L +  ++A   ++ F    +L  L+  +++D + GR   + +  +++ +G
Sbjct: 19  SPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRF-GRRRVLLLGLLLFALG 77

Query: 98  MFSLTLSAILPQLRPPPCQGDQVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQ 157
              L  ++ L                        L     L  LG G + P   A  A+ 
Sbjct: 78  SLLLAFASSLWL----------------------LLVGRFLLGLGGGALYPAAAALIAEW 115

Query: 158 FDETDPKQATKTWKYFNWYYFVMGAAVLVAVTVLVYIQDNVGWNWGLGIPTVAMFLSIIA 217
           F   +  +A         +    G   L+   +   + +++GW W   I  +   L  + 
Sbjct: 116 FPPKERGRA------LGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLALL 169

Query: 218 FVFGYPL 224
            +F   L
Sbjct: 170 LLFLLRL 176

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|233189 TIGR00924, yjdL_sub1_fam, amino acid/peptide transporter (Peptide:H+ symporter), bacterial

 Score = 43.3 bits (102), Expect = 2e-04
 Identities = 34/202 (16%), Positives = 71/202 (35%), Gaps = 27/202 (13%)

Query: 22  IFANEVCEKLAVVGFHANMISYLTTQLHMPLTK--AANTLTNFGGTGSLTPLIGAFVADT 79
           +F  E+ E+ +  G    +  YL  Q  +  ++  A      +     L   +G +  D 
Sbjct: 15  LFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDR 74

Query: 80  YAGRFWTITVASIIYQIGMFSLTLSAILPQLRPPPCQGDQVCKEADTGQLAILYASLLLA 139
             G   T+ +  I+  +G F L +S                          +++  L   
Sbjct: 75  VWGTKKTMVLGGIVLMLGHFMLAMSI----------------------YPDLIFYGLGTI 112

Query: 140 ALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAVLVAVTVLVYIQDNVG 199
           A+GSG  +    +     ++  D  +       F  +Y  +     ++  +   I +N G
Sbjct: 113 AVGSGLFKANPSSMVGKLYERGDMPRRDGG---FTLFYMSINIGSFISPLLAGVIAENYG 169

Query: 200 WNWGLGIPTVAMFLSIIAFVFG 221
           ++ G  +  V M + ++ F  G
Sbjct: 170 YHVGFNLAAVGMVIGLLTFFAG 191

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists [Transport and binding proteins, Amino acids, peptides and amines]. Length = 475

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	577
KOG1237	571	consensus H+/oligopeptide symporter [Amino acid tr	100.0
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	100.0
PRK10207	489	dipeptide/tripeptide permease B; Provisional	100.0
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	100.0
PRK15462	493	dipeptide/tripeptide permease D; Provisional	100.0
PRK09584	500	tppB putative tripeptide transporter permease; Rev	100.0
PRK03545	390	putative arabinose transporter; Provisional	99.95
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.95
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.94
PRK12382	392	putative transporter; Provisional	99.94
PRK05122	399	major facilitator superfamily transporter; Provisi	99.94
PRK10489	417	enterobactin exporter EntS; Provisional	99.94
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.94
PRK10054	395	putative transporter; Provisional	99.94
PRK10504	471	putative transporter; Provisional	99.94
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.94
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.94
PRK11663	434	regulatory protein UhpC; Provisional	99.93
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	99.93
PRK10642	490	proline/glycine betaine transporter; Provisional	99.93
PRK09874	408	drug efflux system protein MdtG; Provisional	99.93
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.93
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	99.93
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.93
PRK09705	393	cynX putative cyanate transporter; Provisional	99.93
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.93
TIGR00891	405	2A0112 putative sialic acid transporter.	99.92
TIGR00900	365	2A0121 H+ Antiporter protein.	99.92
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.92
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.92
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.92
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.92
TIGR00893	399	2A0114 d-galactonate transporter.	99.92
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.92
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.92
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.92
PRK12307	426	putative sialic acid transporter; Provisional	99.92
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.92
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.92
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.92
PLN00028	476	nitrate transmembrane transporter; Provisional	99.92
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.91
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.91
PRK03699	394	putative transporter; Provisional	99.91
KOG2532	466	consensus Permease of the major facilitator superf	99.91
PRK10091	382	MFS transport protein AraJ; Provisional	99.91
PRK03893	496	putative sialic acid transporter; Provisional	99.91
TIGR00898	505	2A0119 cation transport protein.	99.91
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.91
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.91
PRK15011	393	sugar efflux transporter B; Provisional	99.91
TIGR00895	398	2A0115 benzoate transport.	99.91
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.91
PRK09952	438	shikimate transporter; Provisional	99.91
KOG1330	493	consensus Sugar transporter/spinster transmembrane	99.91
PRK15403	413	multidrug efflux system protein MdtM; Provisional	99.9
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.9
PRK11652	394	emrD multidrug resistance protein D; Provisional	99.9
PRK03633	381	putative MFS family transporter protein; Provision	99.9
PRK09528	420	lacY galactoside permease; Reviewed	99.9
PRK11195	393	lysophospholipid transporter LplT; Provisional	99.9
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.9
KOG0254	513	consensus Predicted transporter (major facilitator	99.89
KOG0569	485	consensus Permease of the major facilitator superf	99.89
PRK11043	401	putative transporter; Provisional	99.89
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.89
PRK15075	434	citrate-proton symporter; Provisional	99.89
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.89
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.89
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	99.88
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.88
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.88
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.88
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	99.88
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.88
PRK10133	438	L-fucose transporter; Provisional	99.87
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.87
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	99.86
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.86
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.86
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	99.86
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.86
PRK11010	491	ampG muropeptide transporter; Validated	99.85
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.84
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	99.84
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	99.84
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.83
TIGR00901	356	2A0125 AmpG-related permease.	99.83
PRK11902	402	ampG muropeptide transporter; Reviewed	99.82
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	99.8
PRK10429	473	melibiose:sodium symporter; Provisional	99.8
PRK09848	448	glucuronide transporter; Provisional	99.79
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	99.79
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	99.79
PRK09669	444	putative symporter YagG; Provisional	99.78
TIGR00788	468	fbt folate/biopterin transporter. The only functio	99.78
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	99.78
KOG2615	451	consensus Permease of the major facilitator superf	99.78
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	99.77
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	99.76
TIGR00805	633	oat sodium-independent organic anion transporter.	99.76
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	99.75
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.74
PF13347	428	MFS_2: MFS/sugar transport protein	99.73
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	99.72
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	99.72
KOG2533	495	consensus Permease of the major facilitator superf	99.71
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	99.71
PTZ00207	591	hypothetical protein; Provisional	99.7
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	99.7
KOG3764	464	consensus Vesicular amine transporter [Intracellul	99.68
COG2211	467	MelB Na+/melibiose symporter and related transport	99.67
PRK11462	460	putative transporter; Provisional	99.66
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	99.58
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	99.55
PRK10642	490	proline/glycine betaine transporter; Provisional	99.54
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	99.51
PRK15011	393	sugar efflux transporter B; Provisional	99.48
KOG2325	488	consensus Predicted transporter/transmembrane prot	99.43
PRK05122	399	major facilitator superfamily transporter; Provisi	99.39
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.39
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.39
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.36
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.36
PRK03699	394	putative transporter; Provisional	99.36
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.36
PRK09952	438	shikimate transporter; Provisional	99.36
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.36
COG2270	438	Permeases of the major facilitator superfamily [Ge	99.36
KOG2563	480	consensus Permease of the major facilitator superf	99.35
KOG3626	735	consensus Organic anion transporter [Secondary met	99.34
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.33
PRK09874	408	drug efflux system protein MdtG; Provisional	99.33
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.32
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	99.32
PRK09705	393	cynX putative cyanate transporter; Provisional	99.31
PRK09528	420	lacY galactoside permease; Reviewed	99.3
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	99.3
PRK03545	390	putative arabinose transporter; Provisional	99.3
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.29
TIGR00891	405	2A0112 putative sialic acid transporter.	99.29
PRK03893	496	putative sialic acid transporter; Provisional	99.29
PRK12382	392	putative transporter; Provisional	99.28
TIGR00893	399	2A0114 d-galactonate transporter.	99.28
PRK03633	381	putative MFS family transporter protein; Provision	99.27
KOG2816	463	consensus Predicted transporter ADD1 (major facili	99.25
PRK10489	417	enterobactin exporter EntS; Provisional	99.25
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.25
PRK11663	434	regulatory protein UhpC; Provisional	99.24
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	99.24
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.22
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	99.22
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.21
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	99.21
PRK11010	491	ampG muropeptide transporter; Validated	99.2
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.2
PRK15075	434	citrate-proton symporter; Provisional	99.2
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.19
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.18
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.17
PRK10504	471	putative transporter; Provisional	99.14
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.13
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	99.12
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.1
TIGR00900	365	2A0121 H+ Antiporter protein.	99.09
PLN00028	476	nitrate transmembrane transporter; Provisional	99.09
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.08
PRK12307	426	putative sialic acid transporter; Provisional	99.07
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.07
COG2270	438	Permeases of the major facilitator superfamily [Ge	99.06
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.05
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.04
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.04
PRK10091	382	MFS transport protein AraJ; Provisional	99.03
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.03
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.03
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	99.02
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.02
PRK10054	395	putative transporter; Provisional	99.01
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.01
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.0
PRK11902	402	ampG muropeptide transporter; Reviewed	98.99
TIGR00895	398	2A0115 benzoate transport.	98.98
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	98.98
TIGR00896	355	CynX cyanate transporter. This family of proteins	98.96
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	98.95
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	98.95
KOG3762	618	consensus Predicted transporter [General function	98.95
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	98.95
PRK10213	394	nepI ribonucleoside transporter; Reviewed	98.95
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	98.92
PRK10133	438	L-fucose transporter; Provisional	98.92
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	98.91
PRK11646	400	multidrug resistance protein MdtH; Provisional	98.9
PRK09848	448	glucuronide transporter; Provisional	98.88
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	98.88
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	98.86
PRK11195	393	lysophospholipid transporter LplT; Provisional	98.86
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	98.84
TIGR00901	356	2A0125 AmpG-related permease.	98.84
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	98.82
PF13347	428	MFS_2: MFS/sugar transport protein	98.82
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	98.79
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	98.76
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	98.75
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	98.7
TIGR00898	505	2A0119 cation transport protein.	98.69
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	98.68
PRK11043	401	putative transporter; Provisional	98.67
PRK10473	392	multidrug efflux system protein MdtL; Provisional	98.67
PRK10429	473	melibiose:sodium symporter; Provisional	98.66
KOG1330	493	consensus Sugar transporter/spinster transmembrane	98.61
PRK09669	444	putative symporter YagG; Provisional	98.61
KOG0569	485	consensus Permease of the major facilitator superf	98.61
KOG3098	461	consensus Uncharacterized conserved protein [Funct	98.59
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	98.57
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	98.56
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	98.52
PRK11652	394	emrD multidrug resistance protein D; Provisional	98.48
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	98.47
KOG2532	466	consensus Permease of the major facilitator superf	98.42
COG2211	467	MelB Na+/melibiose symporter and related transport	98.39
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	98.39
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	98.38
COG0477	338	ProP Permeases of the major facilitator superfamil	98.34
KOG3764	464	consensus Vesicular amine transporter [Intracellul	98.28
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	98.27
PRK15403	413	multidrug efflux system protein MdtM; Provisional	98.25
PRK11462	460	putative transporter; Provisional	98.18
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	98.11
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	98.08
PRK09584	500	tppB putative tripeptide transporter permease; Rev	98.07
PRK10207	489	dipeptide/tripeptide permease B; Provisional	98.07
KOG0637	498	consensus Sucrose transporter and related proteins	98.06
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	98.04
KOG4332	454	consensus Predicted sugar transporter [Carbohydrat	98.01
TIGR00788	468	fbt folate/biopterin transporter. The only functio	98.01
TIGR00805	633	oat sodium-independent organic anion transporter.	97.98
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	97.93
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	97.92
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	97.9
PF12832	77	MFS_1_like: MFS_1 like family	97.9
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	97.89
KOG3574	510	consensus Acetyl-CoA transporter [Inorganic ion tr	97.87
PRK15462	493	dipeptide/tripeptide permease D; Provisional	97.8
KOG2615	451	consensus Permease of the major facilitator superf	97.8
KOG3762	618	consensus Predicted transporter [General function	97.77
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	97.71
PTZ00207	591	hypothetical protein; Provisional	97.7
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	97.66
KOG2533	495	consensus Permease of the major facilitator superf	97.66
KOG0254	513	consensus Predicted transporter (major facilitator	97.63
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	97.41
KOG2563	480	consensus Permease of the major facilitator superf	97.38
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	97.32
KOG2325	488	consensus Predicted transporter/transmembrane prot	97.14
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	96.98
PF06779	85	DUF1228: Protein of unknown function (DUF1228); In	96.76
KOG2816	463	consensus Predicted transporter ADD1 (major facili	96.75
PRK03612	521	spermidine synthase; Provisional	96.66
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	96.58
KOG3626	735	consensus Organic anion transporter [Secondary met	96.17
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	96.02
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	95.77
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	95.49
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	95.34
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	95.2
PF13000	544	Acatn: Acetyl-coenzyme A transporter 1; InterPro:	94.6
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	94.5
KOG0637	498	consensus Sucrose transporter and related proteins	93.93
KOG3880	409	consensus Predicted small molecule transporter inv	93.82
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	92.96
KOG2601	503	consensus Iron transporter [Inorganic ion transpor	92.87
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	92.55
PF03219	491	TLC: TLC ATP/ADP transporter; InterPro: IPR004667	92.4
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	91.71
KOG3810	433	consensus Micronutrient transporters (folate trans	91.66
KOG3097	390	consensus Predicted membrane protein [Function unk	90.9
KOG1479	406	consensus Nucleoside transporter [Nucleotide trans	90.79
COG3202	509	ATP/ADP translocase [Energy production and convers	90.72
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	90.62
KOG3098	461	consensus Uncharacterized conserved protein [Funct	89.86
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	89.81
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	86.88
KOG4332	454	consensus Predicted sugar transporter [Carbohydrat	86.75
PF07672	267	MFS_Mycoplasma: Mycoplasma MFS transporter; InterP	85.68
COG0477	338	ProP Permeases of the major facilitator superfamil	85.67

>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]

Probab=100.00  E-value=3.7e-44  Score=388.87  Aligned_cols=533  Identities=50%  Similarity=0.843  Sum_probs=475.7

Q ss_pred             cCCCcceehHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhHhhhhchhhhhhhhhhccchhHHHHHHH
Q 008096           12 KKGGIITMPFIFANEVCEKLAVVGFHANMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADTYAGRFWTITVAS   91 (577)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~lg~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~   91 (577)
                      +.+.|+++.++++.+.++++++|++..++..|+.+.+|.+..++...+..+.......++++++++|.|.||.+++.++.
T Consensus        32 ~~g~~~s~~~il~~e~~e~~a~~g~~~nlv~ylt~~~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s  111 (571)
T KOG1237|consen   32 KTGGWLSAPFILGNEVLERLAFFGLVSNLVTYLTLELHASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGS  111 (571)
T ss_pred             eechhHhHHHHHHHHHHHHHhHhcchhHHHHHHHHHhccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence            88999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhcCCCCCCCC---CCCCcccccccchhHHHHHHHHHHHhccCCcccchhhhhhccCCCCCchhhhh
Q 008096           92 IIYQIGMFSLTLSAILPQLRPPPC---QGDQVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATK  168 (577)
Q Consensus        92 ~~~~i~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~  168 (577)
                      ++..+|.+++.++..+|.++++.|   ..+..|...+......++.++-+..+|.|+..|+..++.+|++++.+++.++.
T Consensus       112 ~i~~~G~~~lt~~a~~~~l~p~~~~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~  191 (571)
T KOG1237|consen  112 LISLLGLFGLTLSAMIPALLPFMCKFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKG  191 (571)
T ss_pred             HHHHHHHHHHHHHHHhhhcCCccccCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhC
Confidence            999999999999999999999887   44557777777788889999999999999999999999999999777666777


Q ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHHHHHHHHHccccccccCCCCChhhHHHHHHHHHHhh
Q 008096          169 TWKYFNWYYFVMGAAVLVAVTVLVYIQDNVGWNWGLGIPTVAMFLSIIAFVFGYPLYRNLNPAGSPFVRLMQVCVAAFRK  248 (577)
Q Consensus       169 r~~~~~~~~~~~~ig~~lg~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (577)
                      +...++++|...+.|..++..+..++.++.||.+.|.++.+++++++++++...+.++..+|.++++.++.+++..+.++
T Consensus       192 ~~~fFnW~yf~~~~g~l~a~t~~vyiq~~~~w~lgf~i~~~~~~lai~iF~~g~~~y~~~~p~gsp~t~i~~Vlvaa~~k  271 (571)
T KOG1237|consen  192 IPSFFNWFYFSQNGGALLAQTVLVYIQDNVGWKLGFGIPTVLNALAILIFLPGFPFYRYKKPRGSPKTRIGQVLVAAAFK  271 (571)
T ss_pred             cccchhHHHHHHHHHHHHHHHHHHhhhhcccceeeccHHHHHHHHHHHHHHcCceeEEeeCCCCCchhHHHHHHHHHHHH
Confidence            88999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccCCCCCcccccccchhhhhhcCCcccccccchhhhhhhhccccc--cCCCCCcccccchhhhhhhhhhhhhhhHHHH
Q 008096          249 RNLDMVSDPNVLYQNEELDASICLDGKLLHTKHMKFLDKAAIVTEED--DIKSPNLWRLNTVHRVEELKSVIRMGPIWAS  326 (577)
Q Consensus       249 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~k~~~~~~~l~~~  326 (577)
                      ++...+.++..+  ..    .........+++...++|++.+..+..  ++...++|+.++.+.+|+.|.+++.++++..
T Consensus       272 ~~~~~~~~~~~~--~~----~~~~~~~~~~t~~f~~l~kaa~~~~~~~~~~~~~~~w~lct~~~Vee~K~~lr~~Pi~~~  345 (571)
T KOG1237|consen  272 RKAVVSLDPEEL--YY----DCTDSVAIEGTKPFRFLDKAALKTSDDLKDGLDANPWRLCTVTQVEEVKAVLRLLPIWLT  345 (571)
T ss_pred             HhccCCCcchhc--cc----cccccccccCCcccchhhHhhccCCcccccccccCCccCCCceehhhhhhhhhhhHHHHH
Confidence            887776654333  00    111112223355667888887765532  3446789999999999999999999999999


Q ss_pred             HHHHHHHhhccceeEEeeccccccccccccccccchhhhhhHHHHHHHHHhhhhhhhhccccccCCCCCCCchhHHHHHH
Q 008096          327 GILLITAYAQQGTFSLQQAKSMDRHLTKSFQIPAGSMSVFTMVSMLSTIALYDRIIIPVARKFTGLDRGITFLHRMGIGF  406 (577)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ig~  406 (577)
                      .+.+++.+.|+.+++..|+..++++.+.++.++++.+..+..+...+..|+++++..|+.+|..+++.+++++.++.+|+
T Consensus       346 ~i~~~~~~aq~~t~~v~Q~~~mdr~~~~~f~ip~asl~~f~~~~~~~~iplydr~~vP~~~~~t~~~~~~t~lqrig~G~  425 (571)
T KOG1237|consen  346 TIIYSTVYAQMVTFFVLQATTMDRHLGSNFKIPAASLQVFILLSILIFIPLYDRVIVPFARKLTGNPFGITPLQRIGIGL  425 (571)
T ss_pred             HHHHHHHHHhhhhheehhhhhcCCCCCCCeEeCchhHHHHHHHHHHhhhhhcceeehhhhhhhcCCCCCCChhheeeccc
Confidence            99999999999999999999999999845999999999999999999999999999999999998777789999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccccchhhHHHHHHHHHHHHHHHHhhhhhhhhhcccCcccHHHHHHHHH
Q 008096          407 VISVLATLVAGFVEMKRKQAALAHGLVDKPHIIIPISVLWLVPQYSLHGIAEAFMSVGHLEFLYDQAPESMRSTATALFW  486 (577)
Q Consensus       407 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~gi~~~~~~~~~~~~v~~~~P~~~rg~~~gi~~  486 (577)
                      .+..+++...+.++.+|...+..     +++.+.+++.+|++++++++|++|.+......++.++++|+++|+.+++++.
T Consensus       426 ~~si~sm~~aa~vE~krl~~~~~-----~~~~~~~mSi~W~iPQyvLig~~Evf~~vg~lEFfY~qaP~sMkS~~~al~l  500 (571)
T KOG1237|consen  426 VLSILSMAVAGIVEAKRLKTAVS-----LLVETNPMSILWQIPQYVLLGAGEVFTSVGGLEFFYSQAPESMKSVATALWL  500 (571)
T ss_pred             hHHHHHHHHHHHHHHHHhhhhhh-----ccCCCCCeeHHHHHHHHHHHHHHHHHHhhhhHHHhHhhCCHHHHHHHHHHHH
Confidence            99999999999999888777665     2334567999999999999999999999999999999999999999999999


Q ss_pred             HHHhHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhhhhhcccccccc
Q 008096          487 TANSIGNYVSTLLVTLVHKFSAGPNGSNWLPDNNLNKGKLEYFYWLITLLQVVNVIYYFFCAKIYTFKPIQ  557 (577)
Q Consensus       487 ~~~~lg~~l~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  557 (577)
                      ...++|+.++..++..+...++.  ..+|...+++|.++++++||+++....+....+..+.++++.++.+
T Consensus       501 ~t~a~G~~lss~Lv~~v~~~t~~--~~~w~~~~~ln~~~ld~Fy~lla~~~~~n~~~~~~~~~~y~~~~~~  569 (571)
T KOG1237|consen  501 LTVAVGNYLSSVLVSLVQFSTGK--AAEWLGFANLNKGRLDYFYWLLAVYSAVNFLYFLICAKRYDYKDDK  569 (571)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCC--CcccCChhHhhhhHHHHHHHHHHHHHhhhhhheEEEEEeeeecccc
Confidence            99999999999999988766543  4589993399999999999999999999999999998887766544

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=100.00  E-value=1.1e-38  Score=329.64  Aligned_cols=461  Identities=20%  Similarity=0.296  Sum_probs=347.3

Q ss_pred             CCCcceehHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----CChHHHHHHHHHHhHhhhhchhhhhhhhhhccchhHHHH
Q 008096           13 KGGIITMPFIFANEVCEKLAVVGFHANMISYLTTQLH----MPLTKAANTLTNFGGTGSLTPLIGAFVADTYAGRFWTIT   88 (577)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~lg----~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~   88 (577)
                      -+|+|.+..+++++++|+++|||+...+..|+..+++    +|++++..+.++|....++.++++||++||+.|+|+++.
T Consensus        17 f~~Pr~l~~if~vE~WERFsyYGmraiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~   96 (498)
T COG3104          17 FGQPRGLYLIFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIV   96 (498)
T ss_pred             CCCCchHHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHH
Confidence            5589999999999999999999999999999999998    999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCcccccccchhHHHHHHHHHHHhccCCcccchhhhhhccCCCCCchhhhh
Q 008096           89 VASIIYQIGMFSLTLSAILPQLRPPPCQGDQVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATK  168 (577)
Q Consensus        89 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~  168 (577)
                      .|.+++++|++.++..+                    ......++++.++.++|.|++.|+..++++|++|++|+||+  
T Consensus        97 lGail~~iGh~~L~~~~--------------------~~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~DprrD--  154 (498)
T COG3104          97 LGAILMAIGHLVLAISS--------------------VSGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPRRD--  154 (498)
T ss_pred             HHHHHHHHHHHHHhccc--------------------cccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCcccC--
Confidence            99999999999999652                    01355689999999999999999999999999999987754  


Q ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHHHHHHHHHccccccccCCC--CChh--hH----HHH
Q 008096          169 TWKYFNWYYFVMGAAVLVAVTVLVYIQDNVGWNWGLGIPTVAMFLSIIAFVFGYPLYRNLNPA--GSPF--VR----LMQ  240 (577)
Q Consensus       169 r~~~~~~~~~~~~ig~~lg~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~--~~----~~~  240 (577)
                        ..++++|++.|+|++++|++.+++.+++||+..|..+++.+.++++.++.+++........  ..+.  ..    ...
T Consensus       155 --~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~f~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~  232 (498)
T COG3104         155 --GGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMIIGLVIFLLGRRHVKGIGGVPDPNPLSFNFLLPVLGG  232 (498)
T ss_pred             --CCccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHccchhcCCCCCCCccchhhhhhhhhHHH
Confidence              5599999999999999999999999999999999999999999999888887665443221  1111  11    011


Q ss_pred             HHHHHHhhccccCCCCCcccccccchhhhhhcCCcccccccchhhhhhhhccccccCCCCCcccccchhhhhhhhhhhhh
Q 008096          241 VCVAAFRKRNLDMVSDPNVLYQNEELDASICLDGKLLHTKHMKFLDKAAIVTEEDDIKSPNLWRLNTVHRVEELKSVIRM  320 (577)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~  320 (577)
                      .+.....-.          ++.....+            +....+....+.....--.....|.   ... ++||+++..
T Consensus       233 ~~~~~~~~~----------~~~~l~~~------------~~~~~~~~~~i~~~~~~~~~~~~~~---~~~-~er~r~~~~  286 (498)
T COG3104         233 LVVMILAAL----------LTLLLNQN------------TFSGVLLVISILIAIIYFAEAFRSP---KVF-DERRRLLAA  286 (498)
T ss_pred             HHHHHHHHH----------HHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHhccC---ccH-HHHHHHHHH
Confidence            110000000          00000000            0000000000000000000000110   112 678889999


Q ss_pred             hhHHHHHHHHHHHhhccceeEEe-eccccccccccccccccchhhhhhHHHHHHHHHhhhhhhhhccccccCCCCCCCch
Q 008096          321 GPIWASGILLITAYAQQGTFSLQ-QAKSMDRHLTKSFQIPAGSMSVFTMVSMLSTIALYDRIIIPVARKFTGLDRGITFL  399 (577)
Q Consensus       321 ~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~  399 (577)
                      +++++..+.||+.+.|.++.+.. .....+++.. ++++++++++++|++.+++++|++++++.++.++.  |.+  ++.
T Consensus       287 ~~Lfl~~~iFW~~~~Q~~ssl~~~a~~~v~~~~~-g~~vp~~~fQslNp~~Iii~~pI~a~l~~~l~~~~--~~p--s~~  361 (498)
T COG3104         287 IPLFLFAVIFWALYEQMGSSLNLYADRNVNRQIF-GFEVPPAWFQSLNPFFIILFSPILAALWTKLGRGN--KQP--STP  361 (498)
T ss_pred             HHHHHHHHHHHHHHHhccchHHHHHHHhhccccc-ceecCHHHHHhhCHHHHHHHHHHHHHHHhHhhcCC--CCC--Ccc
Confidence            99999999999999999865443 4445555533 58899999999999999999999999999988775  333  788


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccccchhhHHHHHHHHHHHHHHHHhhhhhhhhhcccCcccHH
Q 008096          400 HRMGIGFVISVLATLVAGFVEMKRKQAALAHGLVDKPHIIIPISVLWLVPQYSLHGIAEAFMSVGHLEFLYDQAPESMRS  479 (577)
Q Consensus       400 ~~~~ig~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~gi~~~~~~~~~~~~v~~~~P~~~rg  479 (577)
                      .|+..|+.+++.+++++.....    +  +.      +..+..+.+|+++.++++++||.+.+|+..+++.+.+|++..+
T Consensus       362 ~KFalGl~l~g~~fl~l~~~~~----~--~~------~~~~~~s~~~lil~y~l~s~gEL~iSpvGLs~~t~laP~~~~s  429 (498)
T COG3104         362 IKFALGLILAGLGFLILLLAGI----W--FG------GPSGLVSVWWLVLSYVLQSFGELFISPVGLSMVTKLAPPALKS  429 (498)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHH----h--hc------CCCCCcCHHHHHHHHHHHHHHHHHhCHHHHHHHHHhChHHHHH
Confidence            8899999999999888776531    0  11      1134578999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhhhhhcc
Q 008096          480 TATALFWTANSIGNYVSTLLVTLVHKFSAGPNGSNWLPDNNLNKGKLEYFYWLITLLQVVNVIYYFFCAKIY  551 (577)
Q Consensus       480 ~~~gi~~~~~~lg~~l~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  551 (577)
                      ..+|++...+..|..++..+.+.... .     +.     ..+......+|+..+..+++..+..+...|+.
T Consensus       430 ~~ma~wfLt~a~~~~l~g~va~~~~~-~-----~~-----~~~~~~~~~~F~~~g~v~i~~~~~~~~~~~~~  490 (498)
T COG3104         430 FIMAMWFLTVAAGQTLGGQVAGLTAV-T-----DP-----AYTAFIEGRVFGTIGVVAIVIGILLLLLSPKL  490 (498)
T ss_pred             HHHHHHHHHHHHHHHhhceecccccc-c-----ch-----hhhhhhhhhhHHHHHHHHHHHHHHHHHhhHHH
Confidence            99999999999999999888664211 0     00     12223335567777777777777766666653

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=100.00  E-value=2.5e-35  Score=319.57  Aligned_cols=462  Identities=14%  Similarity=0.190  Sum_probs=324.6

Q ss_pred             ccCCCcceehHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhHhhhhchhhhhhhhhhccchhHHHHHH
Q 008096           11 RKKGGIITMPFIFANEVCEKLAVVGFHANMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADTYAGRFWTITVA   90 (577)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~lg~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~   90 (577)
                      ..++|||.++.++..++++++++|++.++++.|+++++|++.++++++.+.+.....+.++++|+++||++||||++.++
T Consensus         8 ~~~~~p~~~~~~~~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g   87 (489)
T PRK10207          8 GLLQQPRPFFMIFFVELWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLG   87 (489)
T ss_pred             chhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHH
Confidence            34579999999999999999999999999999999999999999999999999999999999999999933999999999


Q ss_pred             HHHHHHHHHHHHHhhhcCCCCCCCCCCCCcccccccchhHHHHHHHHHHHhccCCcccchhhhhhccCCCCCchhhhhhh
Q 008096           91 SIIYQIGMFSLTLSAILPQLRPPPCQGDQVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTW  170 (577)
Q Consensus        91 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~  170 (577)
                      .+++.++.++++++.+                     ....++++|+++++|.|+..|+..++++|+||+++++    |.
T Consensus        88 ~~~~~~g~~~~~~~~~---------------------~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~----~~  142 (489)
T PRK10207         88 AIVLAIGYFMTGMSLL---------------------KPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPR----LD  142 (489)
T ss_pred             HHHHHHHHHHHHHhcc---------------------chhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchh----hh
Confidence            9999999999998651                     1233568899999999999999999999999987522    56


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHHHHHHHHHcccccccc--CCCCChhhHHHHHH------
Q 008096          171 KYFNWYYFVMGAAVLVAVTVLVYIQDNVGWNWGLGIPTVAMFLSIIAFVFGYPLYRNL--NPAGSPFVRLMQVC------  242 (577)
Q Consensus       171 ~~~~~~~~~~~ig~~lg~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~------  242 (577)
                      ++++++|++.|+|..+||.+++++.++.||++.|++..+.++++++.+...++..++.  +|++++. |....+      
T Consensus       143 ~~~~~~~~~~nig~~~g~~l~g~l~~~~gw~~~F~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-d~~~~~l~~~~~  221 (489)
T PRK10207        143 GAFTLFYMSINIGSLISLSLAPVIADKFGYSVTYNLCGAGLIIALLVYFACRGMVKDIGSEPDHKPM-SFSKLLLVLLGS  221 (489)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHcchhhcccCCCCCccch-hhhhHHHHHHHH
Confidence            7899999999999999999999999999999999998776666665555554443332  2222221 111110      


Q ss_pred             ---HHHHhhccccCCCCCcccccccchhhhhhcCCcccccccchhhhhhhhccccccCCCCCcccccchhhhhhhhhhhh
Q 008096          243 ---VAAFRKRNLDMVSDPNVLYQNEELDASICLDGKLLHTKHMKFLDKAAIVTEEDDIKSPNLWRLNTVHRVEELKSVIR  319 (577)
Q Consensus       243 ---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~  319 (577)
                         ........ +............                  ...-......+           ..+.++ ..+++.+.
T Consensus       222 ~~~~~~~~~~~-~~~~~~~~~~~~~------------------~~i~~~~f~~~-----------~~~~~~-~~r~r~~~  270 (489)
T PRK10207        222 VVMIFVCAWLM-HNVEVANLVLIVL------------------SIVVTIIFFRE-----------AFKLDK-TGRNKMFV  270 (489)
T ss_pred             HHHHHHHHHHH-hhhhHHHHHHHHH------------------HHHHHHHHHHH-----------HhcCCH-HHHHHHHH
Confidence               00000000 0000000000000                  00000000000           000111 22344555


Q ss_pred             hhhHHHHHHHHHHHhhccceeEEeecc-ccccccccccccccchhhhhhHHHHHHHHHhhhhhhhhccccccCCCCCCCc
Q 008096          320 MGPIWASGILLITAYAQQGTFSLQQAK-SMDRHLTKSFQIPAGSMSVFTMVSMLSTIALYDRIIIPVARKFTGLDRGITF  398 (577)
Q Consensus       320 ~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  398 (577)
                      .+.++...+.+|..+.|.......+.. ..+.+.. ++.++++.+.++|++.+++..|+.++    +.+|.++|+.+.++
T Consensus       271 ~~~l~~~~~~f~~~~~q~~~~l~l~~~~~~~~~~~-G~~i~~~~~~~~n~~~iii~~pl~~~----l~~rl~~r~~~~~~  345 (489)
T PRK10207        271 AFVLMLEAVVFYILYAQMPTSLNFFAINNVHHEIL-GFSINPVSFQALNPFWVVVASPILAG----IYTHLGSKGKDLSM  345 (489)
T ss_pred             HHHHHHHHHHHHHHHHHcccHHHHHHHHhcccccc-ceEECHHHHHhHhHHHHHHHHHHHHH----HHHHHhhCCCCCCc
Confidence            556666678888888887544333332 3444443 67778899999999999999999766    55555555444588


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccccchhhHHHHHHHHHHHHHHHHhhhhhhhhhcccCcccH
Q 008096          399 LHRMGIGFVISVLATLVAGFVEMKRKQAALAHGLVDKPHIIIPISVLWLVPQYSLHGIAEAFMSVGHLEFLYDQAPESMR  478 (577)
Q Consensus       399 ~~~~~ig~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~gi~~~~~~~~~~~~v~~~~P~~~r  478 (577)
                      ..++.+|+++.+++++.+.....   .....+         ...+.+++++.+++.++||.+.+|..++++.+.+|++++
T Consensus       346 ~~k~~~G~~l~~~~~~~~~~~~~---~~~~~~---------~~~s~~~~i~~~~l~g~Ge~~~~~~g~~~~~~~aP~~~~  413 (489)
T PRK10207        346 PMKFTLGMFLCSLGFLTAAAAGM---WFADAQ---------GLTSPWFIVLVYLFQSLGELFISALGLAMIAALVPQHLM  413 (489)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH---hhcCCC---------CccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhChHHHH
Confidence            88999999998888765543220   000000         135678888999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhhhhhcccc
Q 008096          479 STATALFWTANSIGNYVSTLLVTLVHKFSAGPNGSNWLPDNNLNKGKLEYFYWLITLLQVVNVIYYFFCAKIYTF  553 (577)
Q Consensus       479 g~~~gi~~~~~~lg~~l~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  553 (577)
                      |.++|++++.+++|+.++..+...... . ..   ...+  ....+.+.++|..+++.+++..+++++..++.++
T Consensus       414 g~~~g~~~l~~~ig~~lg~~l~~~~~~-~-~~---~~~~--~~~~~~~~~~f~~~~~~~~~~~v~~~~~~~~~~~  481 (489)
T PRK10207        414 GFILGMWFLTQAAAFLLGGYVATFTAV-P-DN---ITDP--LETLPVYTNVFGKIGLVTLGVAVVMALMVPWLNR  481 (489)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcc-c-cc---cccc--hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999988765421 0 00   0000  0112346778888888888888888777665443

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=100.00  E-value=7.3e-35  Score=315.56  Aligned_cols=454  Identities=16%  Similarity=0.189  Sum_probs=324.8

Q ss_pred             ccCCCcceehHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCCChHHHHHHHHHHhHhhhhchhhhhhhhhhccchhHHHH
Q 008096           11 RKKGGIITMPFIFANEVCEKLAVVGFHANMISYLTTQ--LHMPLTKAANTLTNFGGTGSLTPLIGAFVADTYAGRFWTIT   88 (577)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~--lg~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~   88 (577)
                      +..+|+|.++.++..++++++++|++.++++.|++++  +|+|..+++++.+.+.++..++++++|+++||++|||+++.
T Consensus         4 ~~~~~p~~~~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~   83 (475)
T TIGR00924         4 TFFGHPKPLFTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMV   83 (475)
T ss_pred             cccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHH
Confidence            3456888999999999999999999999999999988  99999999999999999999999999999999339999999


Q ss_pred             HHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCcccccccchhHHHHHHHHHHHhccCCcccchhhhhhccCCCCCchhhhh
Q 008096           89 VASIIYQIGMFSLTLSAILPQLRPPPCQGDQVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATK  168 (577)
Q Consensus        89 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~  168 (577)
                      ++.++..++.++++++.                      +.+.++++|++.|+|.|+..|+..++++|++|++++++   
T Consensus        84 ~~~~~~~~g~~~~~~~~----------------------~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~---  138 (475)
T TIGR00924        84 LGGIVLMLGHFMLAMSI----------------------YPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPR---  138 (475)
T ss_pred             HHHHHHHHHHHHHHhcc----------------------cHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCccc---
Confidence            99999999999888765                      45668889999999999999999999999999765333   


Q ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHHHHHHHHHccccccccCCCCChhh----HH-HH---
Q 008096          169 TWKYFNWYYFVMGAAVLVAVTVLVYIQDNVGWNWGLGIPTVAMFLSIIAFVFGYPLYRNLNPAGSPFV----RL-MQ---  240 (577)
Q Consensus       169 r~~~~~~~~~~~~ig~~lg~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~-~~---  240 (577)
                      |+++++++|++.|+|.++||.+++++.+++||++.|++.++.++++.+.+...++..++.++++++.+    +. .+   
T Consensus       139 r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (475)
T TIGR00924       139 RDGGFTLFYMSINIGSFISPLLAGVIAENYGYHVGFNLAAVGMVIGLLTFFAGRHMLRDIGSVPDPLSGQGKTYGKLLLA  218 (475)
T ss_pred             ccceehhHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHcccccccCCCCCCCcchhhhhhHHHHHH
Confidence            77889999999999999999999999998999999999887777666665555544332221111110    00 00   


Q ss_pred             ---HHHHHHhhccccCCCCCcccccccchhhhhhcCCcccccccchhhhhhhhccccccCCCCCcccccchhhhhhhhhh
Q 008096          241 ---VCVAAFRKRNLDMVSDPNVLYQNEELDASICLDGKLLHTKHMKFLDKAAIVTEEDDIKSPNLWRLNTVHRVEELKSV  317 (577)
Q Consensus       241 ---~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~  317 (577)
                         .+........ ...+..   ..+ .          .     ...............  ..++    +.+.. ++++.
T Consensus       219 ~~~~~~~~~~~~~-~~~~~~---~~~-~----------~-----~~~~~~~~~~~~~~~--~~~~----~~~~~-~~~~~  271 (475)
T TIGR00924       219 LLAALALVFFCAW-LMHHVV---IAN-I----------L-----LMTVTLAVIIFFFRL--AFKP----RLDAV-ARNKM  271 (475)
T ss_pred             HHHHHHHHHHHHH-HHhccH---HHH-H----------H-----HHHHHHHHHHHHHHH--HHhc----cCCHH-HHhHH
Confidence               0000000000 000000   000 0          0     000000000000000  0000    01112 22333


Q ss_pred             hhhhhHHHHHHHHHHHhhcccee-EEeeccccccccccccccccchhhhhhHHHHHHHHHhhhhhhhhccccccCCCCCC
Q 008096          318 IRMGPIWASGILLITAYAQQGTF-SLQQAKSMDRHLTKSFQIPAGSMSVFTMVSMLSTIALYDRIIIPVARKFTGLDRGI  396 (577)
Q Consensus       318 ~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~  396 (577)
                      ...+++++...++|+.+.|..+. ..++...++.+.. +++++++++.++|++.+++.+|+.+++..++.+|    ..+.
T Consensus       272 ~~~l~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~-~~~ip~~~~~~~n~~~iil~~p~~~~~~~~l~~~----~~~~  346 (475)
T TIGR00924       272 YAYIVLFLEAVVFWVLYAQMPTSLNFFADNNMHHEML-GMSVPVIWFQSLNPFWVVVGSPVLAMIWTRLGRK----GKDP  346 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccccc-ceEECHHHHHhhhHHHHHHHHHHHHHHHHHHHhC----CCCC
Confidence            44677777788889999888653 3444444566654 6788999999999999999999988755444444    1222


Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccccchhhHHHHHHHHHHHHHHHHhhhhhhhhhcccCcc
Q 008096          397 TFLHRMGIGFVISVLATLVAGFVEMKRKQAALAHGLVDKPHIIIPISVLWLVPQYSLHGIAEAFMSVGHLEFLYDQAPES  476 (577)
Q Consensus       397 ~~~~~~~ig~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~gi~~~~~~~~~~~~v~~~~P~~  476 (577)
                      +...|+.+|+++.++++...++..    +....         +...+++|+++.+++.++||.+..|..++++.+.+|++
T Consensus       347 ~~~~k~~~G~~l~~~~~~~~~~~~----~~~~~---------~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~~  413 (475)
T TIGR00924       347 TTPLKFTLGMLFCGASFLTFAASI----WFADA---------GGLTSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQR  413 (475)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHH----hhcCC---------CCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHH
Confidence            666678999999999988776542    11111         12468899999999999999999999999999999999


Q ss_pred             cHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhhhhhcc
Q 008096          477 MRSTATALFWTANSIGNYVSTLLVTLVHKFSAGPNGSNWLPDNNLNKGKLEYFYWLITLLQVVNVIYYFFCAKIY  551 (577)
Q Consensus       477 ~rg~~~gi~~~~~~lg~~l~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  551 (577)
                      .||+++|++.....+|..+++.+.....+.                 .++.++|...++.+++..+++++..|+.
T Consensus       414 ~~g~~~g~~~l~~~~g~~l~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~  471 (475)
T TIGR00924       414 LMGQMLGMWFLAQAMGSLLGGYLATFGAVP-----------------QGVTGVFGKIGLVTLLVGVVMALMVPWL  471 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----------------cchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999887764321                 1234457777777777777776665543

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=100.00  E-value=6.5e-34  Score=304.58  Aligned_cols=454  Identities=15%  Similarity=0.206  Sum_probs=320.3

Q ss_pred             CcceehHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhHhhhhchhhhhhhhhhccchhHHHHHHHHHH
Q 008096           15 GIITMPFIFANEVCEKLAVVGFHANMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADTYAGRFWTITVASIIY   94 (577)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~lg~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~   94 (577)
                      |++.++.++..++++++++|++..+++.|+++++|+|..+++.+.+.+.....++++++|+++||+.||||++.++.++.
T Consensus         7 ~p~~l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~   86 (493)
T PRK15462          7 QPRAIYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLM   86 (493)
T ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHH
Confidence            88999999999999999999999999999999999999999999999999999999999999999779999999999999


Q ss_pred             HHHHHHHHHhhhcCCCCCCCCCCCCcccccccchhHHHHHHHHHHHhccCCcccchhhhhhccCCCCCchhhhhhhhhhh
Q 008096           95 QIGMFSLTLSAILPQLRPPPCQGDQVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFN  174 (577)
Q Consensus        95 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  174 (577)
                      .++.++++...                     .+...++++..+..+|.|...|+..++++|+||+++++    |.++++
T Consensus        87 ~lg~lll~~~~---------------------~~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~----R~sgf~  141 (493)
T PRK15462         87 AIGHVVLGASE---------------------IHPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPR----RDGGFS  141 (493)
T ss_pred             HHHHHHHHHhh---------------------cchhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCcc----ccceeh
Confidence            99987776432                     01222445555666788888899999999999986433    677899


Q ss_pred             HHHHHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHHHHHHHHHccccccccCC-CCChh--hHHHHH------HHHH
Q 008096          175 WYYFVMGAAVLVAVTVLVYIQDNVGWNWGLGIPTVAMFLSIIAFVFGYPLYRNLNP-AGSPF--VRLMQV------CVAA  245 (577)
Q Consensus       175 ~~~~~~~ig~~lg~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~------~~~~  245 (577)
                      ++|++.|+|+.++|.+++++.+.+||++.|.++++.++++.+.++..++...+..+ +.++.  ++....      +...
T Consensus       142 i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~iaaigm~l~li~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (493)
T PRK15462        142 LMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAVGMIAGLVIFLCGNRHFTHTRGVNKKVLRATNFLLPNWGWLLVLLV  221 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCCchhhhHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999888777777666655544322111 11111  110000      0000


Q ss_pred             ----HhhccccCCCCCcccccccchhhhhhcCCcccccccchhhhh-hhhccccccCCCCCcccccchhhhhhhhhhhhh
Q 008096          246 ----FRKRNLDMVSDPNVLYQNEELDASICLDGKLLHTKHMKFLDK-AAIVTEEDDIKSPNLWRLNTVHRVEELKSVIRM  320 (577)
Q Consensus       246 ----~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~  320 (577)
                          ........                          +....+.. ..+..-.     ..-+...+....++||++...
T Consensus       222 ~~~~~~~~~~~~--------------------------~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~er~r~~~~  270 (493)
T PRK15462        222 ATPALITVLFWK--------------------------EWSVYALIVATIIGLG-----VLAKIYRKAENQKQRKELGLI  270 (493)
T ss_pred             HHHHHHHHHHHH--------------------------HHHHHHHHHHHHHHHH-----HHHHHHHhcCCHHHHhhHHHH
Confidence                00000000                          00000000 0000000     000000000123567888888


Q ss_pred             hhHHHHHHHHHHHhhccce-eEEeeccccccccccccccccchhhhhhHHHHHHHHHhhhhhhhhccccccCCCCCCCch
Q 008096          321 GPIWASGILLITAYAQQGT-FSLQQAKSMDRHLTKSFQIPAGSMSVFTMVSMLSTIALYDRIIIPVARKFTGLDRGITFL  399 (577)
Q Consensus       321 ~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~  399 (577)
                      ++++...+.||..++|.++ ...+.....|+++. +++++++++.++|++.+++.+|++.+++.++.+|  +|.  .+..
T Consensus       271 ~~l~~~~~~Fw~~~~Q~~~sl~lfa~~~vd~~~~-g~~ip~~~~qslNp~~ii~l~P~~a~lw~~l~~~--~~~--~s~~  345 (493)
T PRK15462        271 VTLTFFSMLFWAFAQQGGSSISLYIDRFVNRDMF-GYTVPTAMFQSINAFAVMLCGVFLAWVVKESVAG--NRT--VRIW  345 (493)
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHhccchhc-ceeeCHHHHHhHhHHHHHHHHHHHHHHHHHHhcC--CCC--CCcH
Confidence            8999999999999999874 44555567788876 8999999999999999999999988866555433  222  3788


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccccchhhHHHHHHHHHHHHHHHHhhhhhhhhhcccCcccHH
Q 008096          400 HRMGIGFVISVLATLVAGFVEMKRKQAALAHGLVDKPHIIIPISVLWLVPQYSLHGIAEAFMSVGHLEFLYDQAPESMRS  479 (577)
Q Consensus       400 ~~~~ig~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~gi~~~~~~~~~~~~v~~~~P~~~rg  479 (577)
                      .|+.+|+++++++++++....    .....+         ...+.+|++..++++++||.+.+|...+++.+.+|++.+|
T Consensus       346 ~Kfa~g~~~~g~~f~~l~~~~----~~~~~~---------~~~s~~wl~~~~~~~t~gEl~~sPvgls~~~~laP~~~~g  412 (493)
T PRK15462        346 GKFALGLGLMSAGFCILTLSA----RWSAMY---------GHSSLPLMVLGLAVMGFAELFIDPVAMSQITRIEIPGVTG  412 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH----hhcCCC---------CCcCHHHHHHHHHHHHHHHHHHChHHHHHHHHhChHHHHH
Confidence            899999999999988776544    111111         2368889999999999999999999999999999999999


Q ss_pred             HHHHHHHHH-HhHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCCcchhhHHHHHHHHHHHHH-HHHHhhh
Q 008096          480 TATALFWTA-NSIGNYVSTLLVTLVHKFSAGPNGSNWLPDNNLNKGKLEYFYWLITLLQVVN-VIYYFFC  547 (577)
Q Consensus       480 ~~~gi~~~~-~~lg~~l~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~  547 (577)
                      +.+|++... ..+|+.++..+..........++    ... ..+...+..+|...+..+++. .++.+.+
T Consensus       413 ~~mg~w~l~~~~~~~~~~g~~~~~~~~~~~~~~----~~~-~~~~~~~~~~f~~~~~~~~~~~~~~~~~~  477 (493)
T PRK15462        413 VLTGIYMLLSGAIANYLAGVIADQTSQASFDAS----GAI-NYSINAYIEVFDQITWGALACVGVVLMIW  477 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccccCCcc----ccc-cchhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999774 46787777777665422100000    000 001234556777777777666 5554444

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=100.00  E-value=6.1e-33  Score=302.31  Aligned_cols=459  Identities=17%  Similarity=0.235  Sum_probs=319.0

Q ss_pred             cCCCcceehHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhHhhhhchhhhhhhhhhccchhHHHHHHH
Q 008096           12 KKGGIITMPFIFANEVCEKLAVVGFHANMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADTYAGRFWTITVAS   91 (577)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~lg~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~   91 (577)
                      ..+|++.++.+++.++++++++|++.++++.|+++++|+|.++++++.+.+.......++++|+++||++|||+++.++.
T Consensus        16 ~~~~p~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~   95 (500)
T PRK09584         16 AFKQPKAFYLIFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGA   95 (500)
T ss_pred             hhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence            34677888999999999999999999999999999999999999999999887777878899999999339999999999


Q ss_pred             HHHHHHHHHHHHhhhcCCCCCCCCCCCCcccccccchhHHHHHHHHHHHhccCCcccchhhhhhccCCCCCchhhhhhhh
Q 008096           92 IIYQIGMFSLTLSAILPQLRPPPCQGDQVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWK  171 (577)
Q Consensus        92 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~  171 (577)
                      ++..++.++++++.                     .+...++++|+++|+|.|...|+..++++|++|+++.+    |..
T Consensus        96 ~~~~ig~~l~~~~~---------------------~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~----~~~  150 (500)
T PRK09584         96 IVLAIGYALVAWSG---------------------HDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPR----LDG  150 (500)
T ss_pred             HHHHHHHHHHHHhc---------------------ccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchh----hhh
Confidence            99999988888753                     13455678899999999999999999999999876422    456


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHHHHHHHHHcccccccc--CCCCChhh--HHHH----HH-
Q 008096          172 YFNWYYFVMGAAVLVAVTVLVYIQDNVGWNWGLGIPTVAMFLSIIAFVFGYPLYRNL--NPAGSPFV--RLMQ----VC-  242 (577)
Q Consensus       172 ~~~~~~~~~~ig~~lg~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~--~~~~----~~-  242 (577)
                      +++++|++.++|..+||++++++.+++||++.|++.++..+++++.+....+..++.  ++.+++.+  ....    .. 
T Consensus       151 ~~~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i~~i~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (500)
T PRK09584        151 AFTMYYMSINIGSFFSMLATPWLAAKYGWSVAFALSVVGMLITVVNFAFCQRWVKQYGSKPDFEPINYRKLLLTIVGVVA  230 (500)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHhHHHhccCCCCCCccccchhhHHHHHHHHHH
Confidence            789999999999999999999999999999999998876666655544443322221  22222211  1100    00 


Q ss_pred             HHHHhhccccCCCCCcccccccchhhhhhcCCcccccccchhhhhhhhccccccCCCCCcccccchhhhhhhhhhhhhhh
Q 008096          243 VAAFRKRNLDMVSDPNVLYQNEELDASICLDGKLLHTKHMKFLDKAAIVTEEDDIKSPNLWRLNTVHRVEELKSVIRMGP  322 (577)
Q Consensus       243 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~  322 (577)
                      ...........++    .....           ............   ...           ....+ ..++++.+..+.
T Consensus       231 ~~~~~~~~~~~~~----~~~~~-----------~~~~~~~~~~~~---~~~-----------~~~~~-~~~~~~~~~~~~  280 (500)
T PRK09584        231 LIAIATWLLHNQE----IARMA-----------LGVVALGIVVIF---GKE-----------AFAMK-GAARRKMIVAFI  280 (500)
T ss_pred             HHHHHHHHHhcch----HHHHH-----------HHHHHHHHHHHH---HHH-----------HhhcC-HHHHHHHHHHHH
Confidence            0000000000000    00000           000000000000   000           00011 124455555566


Q ss_pred             HHHHHHHHHHHhhccceeEEeecc-ccccccccccccccchhhhhhHHHHHHHHHhhhhhhhhccccccCCCCCCCchhH
Q 008096          323 IWASGILLITAYAQQGTFSLQQAK-SMDRHLTKSFQIPAGSMSVFTMVSMLSTIALYDRIIIPVARKFTGLDRGITFLHR  401 (577)
Q Consensus       323 l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~  401 (577)
                      +++..+.+|+.+.|.++....+.. ..+++.. ++.++++++.++|++.+++.+|+.++...++.+|.       ++..+
T Consensus       281 ~~~~~i~f~~~~~q~~~~l~~~~~~~~~~~~~-g~~i~~~~~~s~n~i~iil~~p~~~~~~~~l~~r~-------~~~~~  352 (500)
T PRK09584        281 LMLEAIIFFVLYSQMPTSLNFFAIRNVEHSIL-GIAVEPEQYQALNPFWIMIGSPILAAIYNKMGDRL-------PMPHK  352 (500)
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHhcccccc-ceEECHHHHHHHhHHHHHHHHHHHHHHHHHhCcCC-------CcHHH
Confidence            677788899999998876554433 2344443 67788999999999999999999877554444442       56678


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccccchhhHHHHHHHHHHHHHHHHhhhhhhhhhcccCcccHHHH
Q 008096          402 MGIGFVISVLATLVAGFVEMKRKQAALAHGLVDKPHIIIPISVLWLVPQYSLHGIAEAFMSVGHLEFLYDQAPESMRSTA  481 (577)
Q Consensus       402 ~~ig~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~gi~~~~~~~~~~~~v~~~~P~~~rg~~  481 (577)
                      +.+|+++.+++++.+....    .....         ....+.+++++.+++.++||++..|...+++.+.+|++.||.+
T Consensus       353 ~~~G~~l~~l~f~~l~~~~----~~~~~---------~~~vs~~~~~~~~~l~~~ge~~~~p~g~s~~~~~aP~~~rg~~  419 (500)
T PRK09584        353 FAIGMVLCSGAFLVLPLGA----KFAND---------AGIVSVNWLIASYGLQSIGELMISGLGLAMVAQLVPQRLMGFI  419 (500)
T ss_pred             HHHHHHHHHHHHHHHHHHH----HhcCC---------CCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCcHHHHHHH
Confidence            9999999999988876654    11111         1346788899999999999999999999999999999999999


Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhhhhhcccc
Q 008096          482 TALFWTANSIGNYVSTLLVTLVHKFSAGPNGSNWLPDNNLNKGKLEYFYWLITLLQVVNVIYYFFCAKIYTF  553 (577)
Q Consensus       482 ~gi~~~~~~lg~~l~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  553 (577)
                      +|++.....+|+.++..+...+..   .    .-..+.....+.+.++|...++.+++..+++++..++.++
T Consensus       420 ~g~~~l~~a~g~~~~g~~~~~~~~---~----~~~~~~~~~~~~~~~~f~~~~~~~~~~a~~~~~~~~~~~k  484 (500)
T PRK09584        420 MGSWFLTTAGAALIAGYVANLMAV---P----DNVTDPLMSLEVYGRVFLQIGIATAVIAVLMLLTAPKLNR  484 (500)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcc---c----cccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999998888888888887654321   0    0000101112336677888888777666666666655443

>PRK03545 putative arabinose transporter; Provisional

Probab=99.95  E-value=4.2e-25  Score=233.73  Aligned_cols=373  Identities=12%  Similarity=0.056  Sum_probs=244.5

Q ss_pred             CcceehHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhHhhhhchhhhhhhhhhccchhHHHHHHHHHH
Q 008096           15 GIITMPFIFANEVCEKLAVVGFHANMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADTYAGRFWTITVASIIY   94 (577)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~lg~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~   94 (577)
                      +|...+.+....++.....+...+.+| .+.+++|.|.++.+++.+.+.++..+++++.|+++||+ |||+++..+.++.
T Consensus         7 ~~~~~~~l~~~~~~~~~~~~~~~~~~~-~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~   84 (390)
T PRK03545          7 AWLRVVTLALAAFIFNTTEFVPVGLLS-DIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNV-ERRKLLIGLFVLF   84 (390)
T ss_pred             chHHHHHHHHHHHHHHhHHHHHHcchH-HHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-ChHHHHHHHHHHH
Confidence            454444544455555455554444444 56779999999999999999999999999999999998 9999999999999


Q ss_pred             HHHHHHHHHhhhcCCCCCCCCCCCCcccccccchhHHHHHHHHHHHhccCCcccchhhhhhccCCCCCchhhhhhhhhhh
Q 008096           95 QIGMFSLTLSAILPQLRPPPCQGDQVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFN  174 (577)
Q Consensus        95 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  174 (577)
                      .++.+.++++.                      +++.+++.|+++|++.+...|...+++.|++|+++      |+++++
T Consensus        85 ~~~~~~~~~~~----------------------~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~------r~~~~g  136 (390)
T PRK03545         85 IASHVLSALAW----------------------NFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGK------KAQALS  136 (390)
T ss_pred             HHHHHHHHHhc----------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhh------hhhHHH
Confidence            99999998876                      78889999999999999999999999999999887      999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHHHHHHHHHccccccccCCCCChhhHHHHHHHHHHhhccccCC
Q 008096          175 WYYFVMGAAVLVAVTVLVYIQDNVGWNWGLGIPTVAMFLSIIAFVFGYPLYRNLNPAGSPFVRLMQVCVAAFRKRNLDMV  254 (577)
Q Consensus       175 ~~~~~~~ig~~lg~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (577)
                      ++..+.++|..++|.+++.+.+.+|||+.|++.++..++..+......|+.+++  ++++.++.                
T Consensus       137 ~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~~~~--~~~~~~~~----------------  198 (390)
T PRK03545        137 LLATGTALAMVLGLPLGRVIGQYLGWRTTFLAIGGGALITLLLLIKLLPLLPSE--HSGSLKSL----------------  198 (390)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhCCCCCCC--CcchHHHH----------------
Confidence            999999999999999999998889999999998876655544433332221110  00000000                


Q ss_pred             CCCcccccccchhhhhhcCCcccccccchhhhhhhhccccccCCCCCcccccchhhhhhhhhhhhh-hhHHHHHHHHHHH
Q 008096          255 SDPNVLYQNEELDASICLDGKLLHTKHMKFLDKAAIVTEEDDIKSPNLWRLNTVHRVEELKSVIRM-GPIWASGILLITA  333 (577)
Q Consensus       255 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~-~~l~~~~~~~~~~  333 (577)
                                                                            +.....+..... ..........+..
T Consensus       199 ------------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (390)
T PRK03545        199 ------------------------------------------------------PLLFRRPALVSLYLLTVVVVTAHFTA  224 (390)
T ss_pred             ------------------------------------------------------HHHHhCcHHHHHHHHHHHHHHHHHHH
Confidence                                                                  000000111111 1111111111111


Q ss_pred             hhccceeEEeecccccccccccccc-ccchhhhhhHHHHHHHHHhhhhhhhhccccccCCCCCCCchhHHHHHHHHHHHH
Q 008096          334 YAQQGTFSLQQAKSMDRHLTKSFQI-PAGSMSVFTMVSMLSTIALYDRIIIPVARKFTGLDRGITFLHRMGIGFVISVLA  412 (577)
Q Consensus       334 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ig~~~~~l~  412 (577)
                      ....+.+       .....  +.+. ..+.+.....+..+++..+.+    ++.||.++|.        +..+..+..++
T Consensus       225 ~~~~~~~-------l~~~~--g~s~~~~~~~~~~~~~~~~~g~~~~g----~l~dr~~~~~--------~~~~~~~~~~~  283 (390)
T PRK03545        225 YSYIEPF-------VQQVA--GLSENFATLLLLLFGGAGIIGSVLFS----RLGNRHPSGF--------LLIAIALLLVC  283 (390)
T ss_pred             HHHHHHH-------HHHhc--CCCccHHHHHHHHHHHHHHHHHHHHH----HHhhccchhH--------HHHHHHHHHHH
Confidence            1111111       01111  1111 123333334444455555544    4666654321        44454444444


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCCCCccccchhhHHHHHHHHHHHHHHHHhhhhhhhhhcccCcccHHHHHHHHHHHHhHH
Q 008096          413 TLVAGFVEMKRKQAALAHGLVDKPHIIIPISVLWLVPQYSLHGIAEAFMSVGHLEFLYDQAPESMRSTATALFWTANSIG  492 (577)
Q Consensus       413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~gi~~~~~~~~~~~~v~~~~P~~~rg~~~gi~~~~~~lg  492 (577)
                      ........                     .+.+.+.+..++.|++.....+.....+.+..| +.|++++|+.+....+|
T Consensus       284 ~~~l~~~~---------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g  341 (390)
T PRK03545        284 LLLLLPAA---------------------NSEWHLSVLSIFWGIAIMCIGLAMQVKVLKLAP-DATDVAMALFSGIFNIG  341 (390)
T ss_pred             HHHHHHHh---------------------chHHHHHHHHHHHHHHHhcchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHH
Confidence            43332222                     134444556667788877777777788888877 57899999999999999


Q ss_pred             HHHHHHHHHHHhhhcCCCCCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhhhhh
Q 008096          493 NYVSTLLVTLVHKFSAGPNGSNWLPDNNLNKGKLEYFYWLITLLQVVNVIYYFFCAK  549 (577)
Q Consensus       493 ~~l~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  549 (577)
                      ..+|+.+.|.+.+..                 ++...|+..+++.++++++.++..+
T Consensus       342 ~~~G~~~~G~~~~~~-----------------g~~~~~~~~~~~~~~~~~~~~~~~~  381 (390)
T PRK03545        342 IGAGALLGNQVSLHL-----------------GLSSIGYVGAALALAALVWSILIFR  381 (390)
T ss_pred             HHHHHHHHHHHHhcc-----------------ChhHHHHHHHHHHHHHHHHHHHHcc
Confidence            999999999987654                 2245577777778887777766654

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.95  E-value=5.4e-25  Score=233.94  Aligned_cols=361  Identities=12%  Similarity=0.058  Sum_probs=237.6

Q ss_pred             cccCCCcceehHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhHhhhhchhhhhhhhhhccchhHHHHH
Q 008096           10 NRKKGGIITMPFIFANEVCEKLAVVGFHANMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADTYAGRFWTITV   89 (577)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~lg~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~   89 (577)
                      ++.+.+|..+.......+++.+..+..-...| .+.+++|.|..+.+++.+.+.++..+++++.|+++||+ |||+++..
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~   85 (406)
T PRK11551          8 ASSSRLALTIGLCFLVALLEGLDLQSAGVAAP-RMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADRI-GRKRILIV   85 (406)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCchhHHH
Confidence            45567888777777788888887777666655 45578999999999999999999999999999999998 99999999


Q ss_pred             HHHHHHHHHHHHHHhhhcCCCCCCCCCCCCcccccccchhHHHHHHHHHHHhccCCcccchhhhhhccCCCCCchhhhhh
Q 008096           90 ASIIYQIGMFSLTLSAILPQLRPPPCQGDQVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKT  169 (577)
Q Consensus        90 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r  169 (577)
                      +.++..++.++++++.                      +.+.+++.|++.|++.+...+...+++.|++|+++      |
T Consensus        86 ~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------r  137 (406)
T PRK11551         86 SVALFGLFSLATAQAW----------------------DFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRL------R  137 (406)
T ss_pred             HHHHHHHHHHHHHHhc----------------------cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHH------H
Confidence            9998888888888765                      67789999999999999999999999999999877      9


Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHHHHHHHHHccccccccCCCCChhhHHHHHHHHHHhhc
Q 008096          170 WKYFNWYYFVMGAAVLVAVTVLVYIQDNVGWNWGLGIPTVAMFLSIIAFVFGYPLYRNLNPAGSPFVRLMQVCVAAFRKR  249 (577)
Q Consensus       170 ~~~~~~~~~~~~ig~~lg~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (577)
                      ++++++++.+..+|..+++.+++.+.+..+|++.|++.+++.++..+......|+.+..++.++                
T Consensus       138 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~----------------  201 (406)
T PRK11551        138 GTAVSLMYCGVPFGGALASVIGVLAAGDAAWRHIFYVGGVGPLLLVPLLMRWLPESRAFAQAAG----------------  201 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHHHHHHHHHHHHhCCCChhHHhccC----------------
Confidence            9999999999999999999999888888999999988776555444443333332111000000                


Q ss_pred             cccCCCCCcccccccchhhhhhcCCcccccccchhhhhhhhccccccCCCCCcccccchhhhhhhhhhhhhhhHHHHHHH
Q 008096          250 NLDMVSDPNVLYQNEELDASICLDGKLLHTKHMKFLDKAAIVTEEDDIKSPNLWRLNTVHRVEELKSVIRMGPIWASGIL  329 (577)
Q Consensus       250 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~l~~~~~~  329 (577)
                      +   .+++                                          ...++.. .+....++..............
T Consensus       202 ~---~~~~------------------------------------------~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  235 (406)
T PRK11551        202 A---GKQR------------------------------------------APVLRAL-FGEGRATATLLLWISYFFTLIV  235 (406)
T ss_pred             c---chhh------------------------------------------hhhHHHH-hhhhhhhHHHHHHHHHHHHHHH
Confidence            0   0000                                          0000000 0000001111111111111111


Q ss_pred             HHHHhhccceeEEeeccccccccccccc-cccchhhhhhHHHHHHHHHhhhhhhhhccccccCCCCCCCchhHHHHHHHH
Q 008096          330 LITAYAQQGTFSLQQAKSMDRHLTKSFQ-IPAGSMSVFTMVSMLSTIALYDRIIIPVARKFTGLDRGITFLHRMGIGFVI  408 (577)
Q Consensus       330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ig~~~  408 (577)
                      .+......+.+       ... .  +++ ...+.......+..+++..+.++    +.||.++|+.       +..+.+.
T Consensus       236 ~~~~~~~~p~~-------~~~-~--g~s~~~~~~~~~~~~~~~~~~~~~~g~----l~dr~g~~~~-------~~~~~~~  294 (406)
T PRK11551        236 LYFLLNWLPSL-------LVG-Q--GLSRSQAGLVQIAFNIGGALGSLLIGA----LMDRLRPRRV-------VLLIYAG  294 (406)
T ss_pred             HHHHHHHHHHH-------HHh-C--CCChhhhhHHHHHHHHHHHHHHHHHHH----HHHHHhHHHH-------HHHHHHH
Confidence            22211111111       110 1  111 11233334444445555555444    5555543321       3444444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCCCCCccccchhhHHHHHHHHHHHHHHHHhhhhhhhhhcccCcccHHHHHHHHHHH
Q 008096          409 SVLATLVAGFVEMKRKQAALAHGLVDKPHIIIPISVLWLVPQYSLHGIAEAFMSVGHLEFLYDQAPESMRSTATALFWTA  488 (577)
Q Consensus       409 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~gi~~~~~~~~~~~~v~~~~P~~~rg~~~gi~~~~  488 (577)
                      ..++++......                      +.+.+....++.+++.....+..+.++.+..|++.||++.|+.+..
T Consensus       295 ~~~~~~~~~~~~----------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~  352 (406)
T PRK11551        295 ILASLAALAAAP----------------------SFAGMLLAGFAAGLFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAV  352 (406)
T ss_pred             HHHHHHHHHhcC----------------------cHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcchhhhhhhhhHHHHh
Confidence            444444333222                      3334444556677777777888889999999999999999999999


Q ss_pred             HhHHHHHHHHHHHHHhh
Q 008096          489 NSIGNYVSTLLVTLVHK  505 (577)
Q Consensus       489 ~~lg~~l~~~i~~~v~~  505 (577)
                      +.+|..+++.+.+.+.+
T Consensus       353 ~~~g~~~g~~~~g~l~~  369 (406)
T PRK11551        353 GRLGSMAGPLLAGQLLA  369 (406)
T ss_pred             hhHHHHHHhhhHhhhhc
Confidence            99999999999998754

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.94  E-value=3.3e-25  Score=248.16  Aligned_cols=157  Identities=14%  Similarity=0.118  Sum_probs=134.1

Q ss_pred             HHHHHHHHHHHhcCCChHHHHHHHHHHhHhhhhchhhhhhhhhhccchhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCC
Q 008096           36 FHANMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADTYAGRFWTITVASIIYQIGMFSLTLSAILPQLRPPPC  115 (577)
Q Consensus        36 ~~~~l~~~l~~~lg~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  115 (577)
                      ....+.+++.+++|++..+.+++.+++.++.+++++++|+++||+ |||+++++++++..++.++++++.          
T Consensus       185 ~is~ilp~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~-GRR~~lii~lil~~i~~ll~afa~----------  253 (742)
T TIGR01299       185 VVGFVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKL-GRKQCLLICLSVNGFFAFFSSFVQ----------  253 (742)
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHHHHHHHHHHh----------
Confidence            344555677789999999999999999999999999999999998 999999999999999999988876          


Q ss_pred             CCCCcccccccchhHHHHHHHHHHHhccCCcccchhhhhhccCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhc
Q 008096          116 QGDQVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAVLVAVTVLVYIQ  195 (577)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~lg~~i~~~l~  195 (577)
                                  +++.++++|++.|+|.|+..|...++++|.+|++.      |++.+++..++..+|.++++.++..+.
T Consensus       254 ------------s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~------Rg~~~g~~~~~~~iG~ila~~la~~il  315 (742)
T TIGR01299       254 ------------GYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEK------RGEHLSWLCMFWMIGGIYAAAMAWAII  315 (742)
T ss_pred             ------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                        67889999999999999999999999999999777      999999999999999999988765554


Q ss_pred             cc-------------ccchhhhHHHHHHHHHHHHHHHHc
Q 008096          196 DN-------------VGWNWGLGIPTVAMFLSIIAFVFG  221 (577)
Q Consensus       196 ~~-------------~gw~~~f~~~~~~~~~~~~~~~~~  221 (577)
                      ..             .+||+.+++.++..++.++..++.
T Consensus       316 ~~~G~~~~~g~~~~~~gWR~l~~i~~lp~ll~ll~~~~l  354 (742)
T TIGR01299       316 PHYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGALTFM  354 (742)
T ss_pred             HhccchhccccccccccHHHHHHHHHHHHHHHHHHHHHc
Confidence            32             368888888777666555544443

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>PRK12382 putative transporter; Provisional

Probab=99.94  E-value=1.4e-24  Score=229.69  Aligned_cols=374  Identities=13%  Similarity=0.104  Sum_probs=243.5

Q ss_pred             ceehHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhHhhhhchhhhhhhhhhccchhHHHHHHHHHHHH
Q 008096           17 ITMPFIFANEVCEKLAVVGFHANMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADTYAGRFWTITVASIIYQI   96 (577)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~lg~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~i   96 (577)
                      +..+.+.+..++..+......+.+|.|+++++|+|.++.+++.+.+.++..+++++.|+++||+ ||||.+..+.+...+
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~-g~r~~l~~~~~~~~~   93 (392)
T PRK12382         15 FSLFRIAFAVFLTYMTVGLPLPVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQY-GAKRSALQGMLACGL   93 (392)
T ss_pred             ccHHHHHHHHHHHHHHHHHHhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhh-cchHHHHHHHHHHHH
Confidence            4444555577777777888889999999999999999999999999999999999999999999 999999999887777


Q ss_pred             HHHHHHHhhhcCCCCCCCCCCCCcccccccchhHHHHHHHHHHHhccCCcccchhhhhhccCCCCCchhhhhhhhhhhHH
Q 008096           97 GMFSLTLSAILPQLRPPPCQGDQVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWY  176 (577)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  176 (577)
                      +.+........+.              ....+++.+++.|+++|++.+...+...+++.|.+|+++      |+++++++
T Consensus        94 ~~~~~~~~~~~~~--------------~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~a~~~~  153 (392)
T PRK12382         94 AGLAYLLAAILPV--------------SAPFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKH------SGKVMSWN  153 (392)
T ss_pred             HHHHHHhhhcccc--------------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccc------cchhhhHH
Confidence            6554433211110              011367889999999999999999999999999999887      99999999


Q ss_pred             HHHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHHHHHHHHHccccccccCCCCChhhHHHHHHHHHHhhccccCCCC
Q 008096          177 YFVMGAAVLVAVTVLVYIQDNVGWNWGLGIPTVAMFLSIIAFVFGYPLYRNLNPAGSPFVRLMQVCVAAFRKRNLDMVSD  256 (577)
Q Consensus       177 ~~~~~ig~~lg~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (577)
                      +.+.++|..+||.+++++.+.+||++.+.+..+..++.+.   ... +.++.+++++...+                   
T Consensus       154 ~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~-------------------  210 (392)
T PRK12382        154 GMAMYGALAAGAPLGLLLHSHFGFAALALTTMVLPLLAWA---FNG-TVRKVPAHAGERPS-------------------  210 (392)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHH---HHH-hccCCCCCcccCch-------------------
Confidence            9999999999999999998888999876655443322221   111 11110000000000                   


Q ss_pred             CcccccccchhhhhhcCCcccccccchhhhhhhhccccccCCCCCcccccchhhhhhhhhhhhhhhHHHHHHHHHHHhhc
Q 008096          257 PNVLYQNEELDASICLDGKLLHTKHMKFLDKAAIVTEEDDIKSPNLWRLNTVHRVEELKSVIRMGPIWASGILLITAYAQ  336 (577)
Q Consensus       257 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~l~~~~~~~~~~~~~  336 (577)
                                                                   .++..  +.. .+... .   .......+......
T Consensus       211 ---------------------------------------------~~~~~--~~~-~~~~~-~---~~l~~~~~~~~~~~  238 (392)
T PRK12382        211 ---------------------------------------------LWSVV--GLI-WKPGL-G---LALQGVGFAVIGTF  238 (392)
T ss_pred             ---------------------------------------------HHHHH--HHH-HHhHH-H---HHHHHHHHhHHHHH
Confidence                                                         00000  000 00000 0   00111111111111


Q ss_pred             cceeEEeeccccccccccccccccchhhhhhHHHHHHHHHhhhhhhhhccccccCCCCCCCchhHHHHHHHHHHHHHHHH
Q 008096          337 QGTFSLQQAKSMDRHLTKSFQIPAGSMSVFTMVSMLSTIALYDRIIIPVARKFTGLDRGITFLHRMGIGFVISVLATLVA  416 (577)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ig~~~~~l~~~~~  416 (577)
                      .+.+..      +...    . ..+.......+..++..++.+    ++.||+++|+.       +..+..+.++++++.
T Consensus       239 ~~~~~~------~~~~----~-~~~~~~~~~~~~~~~~~~~~g----~l~~r~g~~~~-------~~~~~~~~~~~~~~~  296 (392)
T PRK12382        239 VSLYFA------SKGW----A-MAGFTLTAFGGAFVLMRVLFG----WMPDRFGGVKV-------AIVSLLVETVGLLLL  296 (392)
T ss_pred             HHHHHH------hcCC----c-hhHHHHHHHHHHHHHHHHHHH----HHHHhcCCCee-------hHHHHHHHHHHHHHH
Confidence            011100      0001    0 011222223333444455544    46666665543       566666666666554


Q ss_pred             HHHHHHHHHHHHhcCCCCCCCccccchhhHHHHHHHHHHHHHHHHhhhhhhhhhcccCcccHHHHHHHHHHHHhHHHHHH
Q 008096          417 GFVEMKRKQAALAHGLVDKPHIIIPISVLWLVPQYSLHGIAEAFMSVGHLEFLYDQAPESMRSTATALFWTANSIGNYVS  496 (577)
Q Consensus       417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~gi~~~~~~~~~~~~v~~~~P~~~rg~~~gi~~~~~~lg~~l~  496 (577)
                      ...+                      +.+...+..++.+++.+...+.....+.+..|++.||++.|+.++...+|..++
T Consensus       297 ~~~~----------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig  354 (392)
T PRK12382        297 WLAP----------------------TAWVALAGAALTGAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVS  354 (392)
T ss_pred             HHcc----------------------cHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence            4332                      334445566778888888888888888999999999999999999999999999


Q ss_pred             HHHHHHHhhhcCCCCCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhhh
Q 008096          497 TLLVTLVHKFSAGPNGSNWLPDNNLNKGKLEYFYWLITLLQVVNVIYYFFC  547 (577)
Q Consensus       497 ~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  547 (577)
                      +.+.+.+.+..      +           +...|.+.+++.+++.++.++.
T Consensus       355 ~~~~g~l~~~~------g-----------~~~~~~~~~~~~~~~~~~~~~~  388 (392)
T PRK12382        355 GPLAGMLATSF------G-----------YPSVFLAGAISAVLGIIVTILS  388 (392)
T ss_pred             HHHHHHHHHHh------C-----------chHHHHHHHHHHHHHHHHHHhh
Confidence            99999987653      1           2445777777777777666544

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.94  E-value=2e-24  Score=229.06  Aligned_cols=375  Identities=14%  Similarity=0.073  Sum_probs=247.5

Q ss_pred             CcceehHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhHhhhhchhhhhhhhhhccchhHHHHHHHHHH
Q 008096           15 GIITMPFIFANEVCEKLAVVGFHANMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADTYAGRFWTITVASIIY   94 (577)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~lg~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~   94 (577)
                      .++.+..+....+...++.....+.+|.|+++++|.|..+.+++.+.+.++..+++++.|+++||+ |||+++..+.++.
T Consensus        13 ~~~~~~~l~~~~~~~~~~~~~~~~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~-g~r~~l~~~~~~~   91 (399)
T PRK05122         13 LTLRIVSIVMFTFISYLTIGLPLAVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTL-GPKKAVVFGLCGC   91 (399)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhcc-CCcchHHHHHHHH
Confidence            345556666688888888888899999999999999999999999999999999999999999999 9999999999988


Q ss_pred             HHHHHHHHHhhhcCCCCCCCCCCCCcccccccchhHHHHHHHHHHHhccCCcccchhhhhhccCCCCCchhhhhhhhhhh
Q 008096           95 QIGMFSLTLSAILPQLRPPPCQGDQVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFN  174 (577)
Q Consensus        95 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  174 (577)
                      .++.+.+.++.....              ....+...+++.|+++|++.+...+...+++.|.+|+++      |+++.+
T Consensus        92 ~~~~~~~~~~~~~~~--------------~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~  151 (399)
T PRK05122         92 ALSGLLYLLAGLLAA--------------WPVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALH------TGRVIS  151 (399)
T ss_pred             HHHHHHHHHhhhhhc--------------cchhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhh------hccchh
Confidence            888777665431110              001246678999999999999999999999999999888      999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHHHHHHHHHccccccccCCCCChhhHHHHHHHHHHhhccccCC
Q 008096          175 WYYFVMGAAVLVAVTVLVYIQDNVGWNWGLGIPTVAMFLSIIAFVFGYPLYRNLNPAGSPFVRLMQVCVAAFRKRNLDMV  254 (577)
Q Consensus       175 ~~~~~~~ig~~lg~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (577)
                      ++..+..+|..+|+.+++++.+.+||++.+++..+..++..+.   ..+. +..++++++..                  
T Consensus       152 ~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~------------------  209 (399)
T PRK05122        152 WNGIATYGALAIGAPLGVLLYHWGGLAGLGLLIMLLALLGLLL---ARPR-PAVPPVKGERL------------------  209 (399)
T ss_pred             hhhhhhhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHH---HhcC-CCCCCCCccch------------------
Confidence            9999999999999999999998899999887766544333222   1111 10000000000                  


Q ss_pred             CCCcccccccchhhhhhcCCcccccccchhhhhhhhccccccCCCCCcccccchhhhhhhhhhhhh-hhHHHHHHHHHHH
Q 008096          255 SDPNVLYQNEELDASICLDGKLLHTKHMKFLDKAAIVTEEDDIKSPNLWRLNTVHRVEELKSVIRM-GPIWASGILLITA  333 (577)
Q Consensus       255 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~-~~l~~~~~~~~~~  333 (577)
                                                                     +++       +..|..... ....+....+...
T Consensus       210 -----------------------------------------------~~~-------~~~~~~~~~~~~~~~~~~~~~~~  235 (399)
T PRK05122        210 -----------------------------------------------PFR-------RVLGRVWPYGMGLALASIGFGTI  235 (399)
T ss_pred             -----------------------------------------------hHH-------HHHHHHHHHHHHHHHHHHHHHHH
Confidence                                                           000       000000000 0011111111111


Q ss_pred             hhccceeEEeeccccccccccccccccchhhhhhHHHHHHHHHhhhhhhhhccccccCCCCCCCchhHHHHHHHHHHHHH
Q 008096          334 YAQQGTFSLQQAKSMDRHLTKSFQIPAGSMSVFTMVSMLSTIALYDRIIIPVARKFTGLDRGITFLHRMGIGFVISVLAT  413 (577)
Q Consensus       334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ig~~~~~l~~  413 (577)
                      ....+.+..      +.    +. ...........+..++..++.    .++.||.++|+       .+..+.++.++++
T Consensus       236 ~~~~~~~~~------~~----~~-~~~~~~~~~~~~~~~~~~~~~----g~l~~r~~~~~-------~~~~~~~~~~~~~  293 (399)
T PRK05122        236 ATFITLYYA------AR----GW-DGAALALTLFGVAFVGARLLF----GNLINRLGGLR-------VAIVSLLVEILGL  293 (399)
T ss_pred             HHHHHHHHH------Hc----cc-ccchHHHHHHHHHHHHHHHHH----HHHHHHhccHH-------HHHHHHHHHHHHH
Confidence            111111100      00    00 001122223333344444443    34666654332       2556666666666


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCCCCccccchhhHHHHHHHHHHHHHHHHhhhhhhhhhcccCcccHHHHHHHHHHHHhHHH
Q 008096          414 LVAGFVEMKRKQAALAHGLVDKPHIIIPISVLWLVPQYSLHGIAEAFMSVGHLEFLYDQAPESMRSTATALFWTANSIGN  493 (577)
Q Consensus       414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~gi~~~~~~~~~~~~v~~~~P~~~rg~~~gi~~~~~~lg~  493 (577)
                      ++.....                      +.+..++..++.|++.+...+.....+.+..|++.||+++|+.+....+|.
T Consensus       294 ~~~~~~~----------------------~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~  351 (399)
T PRK05122        294 LLLWLAP----------------------SPWMALIGAALTGFGFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSL  351 (399)
T ss_pred             HHHHHhc----------------------cHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence            5554433                      344455566788888888888877888899999999999999999999999


Q ss_pred             HHHHHHHHHHhhhcCCCCCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhhh
Q 008096          494 YVSTLLVTLVHKFSAGPNGSNWLPDNNLNKGKLEYFYWLITLLQVVNVIYYFFC  547 (577)
Q Consensus       494 ~l~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  547 (577)
                      .+++.+.+.+.+..                 ++.+.|+..+++.+++.+..+++
T Consensus       352 ~~~~~~~g~l~~~~-----------------g~~~~~~~~~~~~~~~~~~~~~~  388 (399)
T PRK05122        352 GITGPLAGLVASWF-----------------GYPSIFLAAALAALLGLALTWLL  388 (399)
T ss_pred             HHHHHHHHHHHHHc-----------------CHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999988876543                 23455777777777766665544

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.94  E-value=4.7e-25  Score=235.46  Aligned_cols=391  Identities=13%  Similarity=0.074  Sum_probs=246.7

Q ss_pred             ehHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhHhhhhchhhhhhhhhhccchhHHHHHHHHHHHHHH
Q 008096           19 MPFIFANEVCEKLAVVGFHANMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADTYAGRFWTITVASIIYQIGM   98 (577)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~lg~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~i~~   98 (577)
                      ...++...++..+........+|.+.+ +++.|..+.+++.+.+.++..+++++.|+++||+ |||+.+..+.++..++.
T Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~-g~~~~l~~~~~~~~~~~   96 (417)
T PRK10489         19 FRAVFIARFISIFGLGLLGVAVPVQIQ-MMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRY-DRKKLILLARGTCGLGF   96 (417)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHH-HHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhc-CCceEEEehHHHHHHHH
Confidence            344555566777776666677777664 6778999999999999999999999999999998 99999998888777776


Q ss_pred             HHHHHhhhcCCCCCCCCCCCCcccccccchhHHHHHHHHHHHhccCCcccchhhhhhccCCCCCchhhhhhhhhhhHHHH
Q 008096           99 FSLTLSAILPQLRPPPCQGDQVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYF  178 (577)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~  178 (577)
                      +.+++.....                 ..+++.+++.|+++|++.+...++..+++.|++|+++      |+++.++.+.
T Consensus        97 ~~~~~~~~~~-----------------~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~  153 (417)
T PRK10489         97 IGLALNAFLP-----------------EPSLLAIYLLGLWDGFFGSLGVTALLAATPALVGREN------LMQAGAITML  153 (417)
T ss_pred             HHHHHHHHcC-----------------CCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHH------HHHHHHHHHH
Confidence            6655321000                 1256778899999999998888999999999999776      8899999999


Q ss_pred             HHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHHHHHHHHHccccccccC-CCCChhhHHHHHHHHHHhhccccCCCCC
Q 008096          179 VMGAAVLVAVTVLVYIQDNVGWNWGLGIPTVAMFLSIIAFVFGYPLYRNLN-PAGSPFVRLMQVCVAAFRKRNLDMVSDP  257 (577)
Q Consensus       179 ~~~ig~~lg~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (577)
                      ..++|..+||.+++.+.+..+|++.|++.++..++..++....+ +.++.+ ++.++.++..+                 
T Consensus       154 ~~~~g~~~g~~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~-----------------  215 (417)
T PRK10489        154 TVRLGSVISPALGGLLIAAGGVAWNYGLAAAGTFITLLPLLRLP-ALPPPPQPREHPLRSLLA-----------------  215 (417)
T ss_pred             HHhHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhCC-CCCCCCcccccchHHHHH-----------------
Confidence            99999999999999998888999999887776665554443322 111000 00000000000                 


Q ss_pred             cccccccchhhhhhcCCcccccccchhhhhhhhccccccCCCCCcccccchhhhhhhhhhhhhhhHHHHHHHHHHHhhcc
Q 008096          258 NVLYQNEELDASICLDGKLLHTKHMKFLDKAAIVTEEDDIKSPNLWRLNTVHRVEELKSVIRMGPIWASGILLITAYAQQ  337 (577)
Q Consensus       258 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~l~~~~~~~~~~~~~~  337 (577)
                                                                  .+     +...+.+.+................... 
T Consensus       216 --------------------------------------------~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  245 (417)
T PRK10489        216 --------------------------------------------GF-----RFLLASPVVGGIALLGGLLTMASAVRVL-  245 (417)
T ss_pred             --------------------------------------------HH-----HHHHcChHHHHHHHHHHHHHHHHhHHHh-
Confidence                                                        00     0000011111111110110011111111 


Q ss_pred             ceeEEeeccccccccccccc-cccchhhhhhHHHHHHHHHhhhhhhhhccccccCCCCCCCchhHHHHHHHHHHHHHHHH
Q 008096          338 GTFSLQQAKSMDRHLTKSFQ-IPAGSMSVFTMVSMLSTIALYDRIIIPVARKFTGLDRGITFLHRMGIGFVISVLATLVA  416 (577)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ig~~~~~l~~~~~  416 (577)
                            .+.+.....  +.+ ...+.+.....++.+++..+.+    ++.||..++       +.+..+.++.++++++.
T Consensus       246 ------~p~~~~~~~--g~~~~~~g~~~~~~~~g~~ig~~~~~----~l~~~~~~~-------~~l~~~~~~~~~~~~~~  306 (417)
T PRK10489        246 ------YPALADEVW--QMGAAQIGLLYAAVPLGAALGALTSG----WLAHSARPG-------LLMLLSTLGSFLAVGLF  306 (417)
T ss_pred             ------hHHHHHhcc--CCChhHhHHHHHHHHHHHHHHHHHHH----HhhhccCcc-------hHHHHHHHHHHHHHHHH
Confidence                  111112111  111 1123333444444455554433    344442211       22556666666665544


Q ss_pred             HHHHHHHHHHHHhcCCCCCCCccccchhhHHHHHHHHHHHHHHHHhhhhhhhhhcccCcccHHHHHHHHHHHHhHHHHHH
Q 008096          417 GFVEMKRKQAALAHGLVDKPHIIIPISVLWLVPQYSLHGIAEAFMSVGHLEFLYDQAPESMRSTATALFWTANSIGNYVS  496 (577)
Q Consensus       417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~gi~~~~~~~~~~~~v~~~~P~~~rg~~~gi~~~~~~lg~~l~  496 (577)
                      ...+                      +++......++.+++.+...+..+.++.+..|++.||++.|++++.+.+|..++
T Consensus       307 ~~~~----------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g  364 (417)
T PRK10489        307 GLMP----------------------MWILAVLCLALFGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIG  364 (417)
T ss_pred             Hccc----------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHH
Confidence            4322                      444445566777888777778888899999999999999999999999999999


Q ss_pred             HHHHHHHhhhcCCCCCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhhhhhccccccccccc
Q 008096          497 TLLVTLVHKFSAGPNGSNWLPDNNLNKGKLEYFYWLITLLQVVNVIYYFFCAKIYTFKPIQMHQ  560 (577)
Q Consensus       497 ~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  560 (577)
                      +.+.|.+.+..+.                 ...++..+++.++..++.+...++.|+++.||.+
T Consensus       365 ~~l~G~l~~~~g~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  411 (417)
T PRK10489        365 AALLGGLGAMMTP-----------------VASASASGFGLLIIGVLLLLVLGELRRFRQTPPE  411 (417)
T ss_pred             HHHHHHHHHHhch-----------------hhHHHHHHHHHHHHHHHHHHhccccccccccccc
Confidence            9999998765411                 2235555655555555555566766766666554

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.94  E-value=4.2e-25  Score=241.64  Aligned_cols=183  Identities=14%  Similarity=0.073  Sum_probs=137.7

Q ss_pred             CCcceehHHHHHHHHHHHHHHHHHHHHHHHHHHh----cCCChHHHHHHHHHHhHhhhhchhhhhhhhhhccchhHHHHH
Q 008096           14 GGIITMPFIFANEVCEKLAVVGFHANMISYLTTQ----LHMPLTKAANTLTNFGGTGSLTPLIGAFVADTYAGRFWTITV   89 (577)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~----lg~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~   89 (577)
                      .|++.+..+....+.+.+....+-...+..-.+.    .+.+..+.+++.+.+.++..+++++.|+++||+ |||+++.+
T Consensus        13 ~~~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~-Grr~~~~~   91 (502)
T TIGR00887        13 QHFRAIVIAGVGFFTDSYDLFCISLVTKMLGYVYYHGKGPLPSSVSAAVNGSASIGTLAGQLFFGWLADKL-GRKRVYGM   91 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-ccHHHHHH
Confidence            3444444444455555554443344344332222    245677889999999999999999999999998 99999999


Q ss_pred             HHHHHHHHHHHHHHhhhcCCCCCCCCCCCCcccccccchhHHHHHHHHHHHhccCCcccchhhhhhccCCCCCchhhhhh
Q 008096           90 ASIIYQIGMFSLTLSAILPQLRPPPCQGDQVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKT  169 (577)
Q Consensus        90 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r  169 (577)
                      ++++..++.++++++.+..                +..+...++++|+++|++.|+..+...++++|.+|+++      |
T Consensus        92 ~~~~~~v~~~~~~~~~~~~----------------~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~------R  149 (502)
T TIGR00887        92 ELIIMIIATVASGLSPGSS----------------PKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKW------R  149 (502)
T ss_pred             HHHHHHHHHHHHHHccCcc----------------cchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhh------H
Confidence            9999999998888764100                01136789999999999999999999999999999988      9


Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHhhcc-----------------------cccchhhhHHHHHHHHHHHHHHH
Q 008096          170 WKYFNWYYFVMGAAVLVAVTVLVYIQD-----------------------NVGWNWGLGIPTVAMFLSIIAFV  219 (577)
Q Consensus       170 ~~~~~~~~~~~~ig~~lg~~i~~~l~~-----------------------~~gw~~~f~~~~~~~~~~~~~~~  219 (577)
                      +++.++.+....+|..+++.+..++..                       +++||+.|.+.++..++.++...
T Consensus       150 g~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~~~~  222 (502)
T TIGR00887       150 GAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALYFRL  222 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999888765421                       24799999887776665544433

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>PRK10054 putative transporter; Provisional

Probab=99.94  E-value=1.1e-24  Score=231.06  Aligned_cols=355  Identities=11%  Similarity=0.075  Sum_probs=236.5

Q ss_pred             CcceehHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhHhhhhchhhhhhhhhhccchhHHHHHHHHHH
Q 008096           15 GIITMPFIFANEVCEKLAVVGFHANMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADTYAGRFWTITVASIIY   94 (577)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~lg~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~   94 (577)
                      .+|+.+.++...++...+.+...++++.|+++++|+|..+.+++.+.+.+++.+++++.|+++||+ |||+++.++.++.
T Consensus         5 ~~~~~~~l~~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~-g~k~~~~~~~~~~   83 (395)
T PRK10054          5 LRRSTSALLASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKF-DKKRYMLLAITAF   83 (395)
T ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CcchhHHHHHHHH
Confidence            446677878889999999999999999999999999999999999999999999999999999998 9999999999988


Q ss_pred             HHHHHHHHHhhhcCCCCCCCCCCCCcccccccchhHHHHHHHHHHHhccCCcccchhhhhhccCCCCCchhhhhhhhhhh
Q 008096           95 QIGMFSLTLSAILPQLRPPPCQGDQVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFN  174 (577)
Q Consensus        95 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  174 (577)
                      .++.+.+++++                      +.+.+++.|.+.+.+.+...++..++..|.+|+++      |+++++
T Consensus        84 ~~~~~~~~~~~----------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~g  135 (395)
T PRK10054         84 ASGFIAIPLVN----------------------NVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTS------KTKIFS  135 (395)
T ss_pred             HHHHHHHHHHh----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhH------HHHHHH
Confidence            88888888766                      56677788888888878888889999999999777      999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHHHHHHHHHccccccccCCCCChhhHHHHHHHHHHhhccccCC
Q 008096          175 WYYFVMGAAVLVAVTVLVYIQDNVGWNWGLGIPTVAMFLSIIAFVFGYPLYRNLNPAGSPFVRLMQVCVAAFRKRNLDMV  254 (577)
Q Consensus       175 ~~~~~~~ig~~lg~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (577)
                      +.+...++|..+||.+++++.+ .+|+.+|++.++..++..+......++.++++++++  ++            .    
T Consensus       136 ~~~~~~~lg~~igp~l~~~l~~-~g~~~~f~~~~~~~~i~~i~~~~~~~~~~~~~~~~~--~~------------~----  196 (395)
T PRK10054        136 LNYTMLNIGWTVGPPLGTLLVM-QSINLPFWLAAICSAFPLVFIQIWVQRSEKAIATET--GS------------V----  196 (395)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-hccCcHHHHHHHHHHHHHHHHHHHHhccccccccch--hh------------h----
Confidence            9999999999999999998874 799999998887766665444333332111100000  00            0    


Q ss_pred             CCCcccccccchhhhhhcCCcccccccchhhhhhhhccccccCCCCCcccccchhhhhhhhhhhhhh-hHHHHHHHHHHH
Q 008096          255 SDPNVLYQNEELDASICLDGKLLHTKHMKFLDKAAIVTEEDDIKSPNLWRLNTVHRVEELKSVIRMG-PIWASGILLITA  333 (577)
Q Consensus       255 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~-~l~~~~~~~~~~  333 (577)
                                                                      |+   .+...+.|...... ...+........
T Consensus       197 ------------------------------------------------~~---~~~~~~~~~~~~~~~~~~l~~~~~~~~  225 (395)
T PRK10054        197 ------------------------------------------------WS---PSVLLQDKALLWFTCSGFLASFVSGAF  225 (395)
T ss_pred             ------------------------------------------------hh---hhhhccCceehHHHHHHHHHHHHHHHh
Confidence                                                            00   00000111111111 111111111111


Q ss_pred             hhccceeEEeeccccccccccccccccchhhhhhHHHHHHHHHhhhhhhhhccccccCCCCCCCchhHHHHHHHHHHHHH
Q 008096          334 YAQQGTFSLQQAKSMDRHLTKSFQIPAGSMSVFTMVSMLSTIALYDRIIIPVARKFTGLDRGITFLHRMGIGFVISVLAT  413 (577)
Q Consensus       334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ig~~~~~l~~  413 (577)
                      ......+..   ...+....   +...+.+...+....+..    .....++.||.++|+       .+..++.+.++++
T Consensus       226 ~~~~~~~~~---~~~~~~~~---~~~~g~~~~~~~~~~~~~----~~~~g~~~~~~~~~~-------~l~~~~~~~~~~~  288 (395)
T PRK10054        226 ASCISQYVM---VVADSDFA---EKVVAVVLPVNAAMVVSL----QYSVGRRLNAANIRP-------LMTAGTLCFVIGL  288 (395)
T ss_pred             hhhHHHHHH---HhcccchH---HHHHHHHHHhhhhheeee----hhHHHHHHccCCchh-------HHHHHHHHHHHHH
Confidence            000011100   00010010   000112222222222222    223344555554333       2667776666666


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCCCCccccchhhHHHHHHHHHHHHHHHHhhhhhhhhhcccCcccHHHHHHHHHHHHhHHH
Q 008096          414 LVAGFVEMKRKQAALAHGLVDKPHIIIPISVLWLVPQYSLHGIAEAFMSVGHLEFLYDQAPESMRSTATALFWTANSIGN  493 (577)
Q Consensus       414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~gi~~~~~~~~~~~~v~~~~P~~~rg~~~gi~~~~~~lg~  493 (577)
                      .......                     .+++.+.+..++.++++....|..+..+.+.+|++.|+++.+..+ ...+|.
T Consensus       289 ~~~~~~~---------------------~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~p~~~~~~~~~~~~-~~~~G~  346 (395)
T PRK10054        289 VGFIFSG---------------------NSLLLWGMSAAVFTVGEIIYAPGEYMLIDHIAPPGMKASYFSAQS-LGWLGA  346 (395)
T ss_pred             HHHHHcc---------------------hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCcccceehHhHHH-HHHHHH
Confidence            5554322                     133334456678999999989999999999999999999998765 566899


Q ss_pred             HHHHHHHHHHhhhc
Q 008096          494 YVSTLLVTLVHKFS  507 (577)
Q Consensus       494 ~l~~~i~~~v~~~~  507 (577)
                      .+||.+.|.+.|..
T Consensus       347 ~~Gp~~~G~l~~~~  360 (395)
T PRK10054        347 AINPLVSGVILTTL  360 (395)
T ss_pred             HHHHHHHHHHHHHc
Confidence            99999999988765

>PRK10504 putative transporter; Provisional

Probab=99.94  E-value=3.5e-24  Score=232.38  Aligned_cols=179  Identities=13%  Similarity=0.097  Sum_probs=153.6

Q ss_pred             cceehHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhHhhhhchhhhhhhhhhccchhHHHHHHHHHHH
Q 008096           16 IITMPFIFANEVCEKLAVVGFHANMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADTYAGRFWTITVASIIYQ   95 (577)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~lg~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~   95 (577)
                      .+..+.+....++..+..+.+.+.+|.+.+ ++|.|..+.+++.+.+.++..++.++.|+++||+ |||+++..+.++..
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~r~~~~~~~~~~~   86 (471)
T PRK10504          9 RWQLWIVAFGFFMQSLDTTIVNTALPSMAQ-SLGESPLHMHMVIVSYVLTVAVMLPASGWLADRV-GVRNIFFTAIVLFT   86 (471)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHH-HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-chHHHHHHHHHHHH
Confidence            345566666777788888888888888875 6999999999999999999999999999999998 99999999998888


Q ss_pred             HHHHHHHHhhhcCCCCCCCCCCCCcccccccchhHHHHHHHHHHHhccCCcccchhhhhhccCCCCCchhhhhhhhhhhH
Q 008096           96 IGMFSLTLSAILPQLRPPPCQGDQVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNW  175 (577)
Q Consensus        96 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  175 (577)
                      ++.+.+.++.                      +.+.+++.|+++|++.+...|...+++.|.+|+++      |++++++
T Consensus        87 ~~~~~~~~~~----------------------~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~  138 (471)
T PRK10504         87 LGSLFCALSG----------------------TLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQ------YMAAMTF  138 (471)
T ss_pred             HHHHHHHHhC----------------------CHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHH------HHHHHHH
Confidence            8888877654                      67778999999999999999999999999999766      8999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHHHHHHHHHcccc
Q 008096          176 YYFVMGAAVLVAVTVLVYIQDNVGWNWGLGIPTVAMFLSIIAFVFGYPL  224 (577)
Q Consensus       176 ~~~~~~ig~~lg~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~  224 (577)
                      .+...++|..+||.+++++.+..||++.|++..+...+..+......++
T Consensus       139 ~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~  187 (471)
T PRK10504        139 VTLPGQVGPLLGPALGGLLVEYASWHWIFLINIPVGIIGAIATLMLMPN  187 (471)
T ss_pred             HHHHHHHHHHhhhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            9999999999999999999998999999998877665555544444443

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.94  E-value=5.8e-24  Score=225.83  Aligned_cols=348  Identities=13%  Similarity=0.094  Sum_probs=235.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhHhhhhchhhhhhhhhhccchhHHHHHHHHHHHHHHH
Q 008096           20 PFIFANEVCEKLAVVGFHANMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADTYAGRFWTITVASIIYQIGMF   99 (577)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~lg~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~i~~~   99 (577)
                      ..++...++...+.+...++++.|+++++|+|..+.|++.+.+.+...+.+++.|+++||+ |||+++..+.++..++.+
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~-g~k~~l~~~~~~~~~~~~   91 (400)
T PRK11646         13 YFLLIDNMLVVLGFFVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRF-GAKPMIVTGMLMRAAGFA   91 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHh-CchHHHHHHHHHHHHHHH
Confidence            5566788899999999999999999999999999999999999999999999999999998 999999999999999998


Q ss_pred             HHHHhhhcCCCCCCCCCCCCcccccccchhHHHHHHHHHHHhccCCcccchhhhhhccCCCCCchhhhhhhhhhhHHHHH
Q 008096          100 SLTLSAILPQLRPPPCQGDQVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFV  179 (577)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  179 (577)
                      ++.++.                      +.+.+++.|+++|++.+...|...+++.|.+|+++      |+++.++.+..
T Consensus        92 ~~~~~~----------------------~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~a~~~~~~~  143 (400)
T PRK11646         92 TMAIAH----------------------EPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQ------RGRFFSLLMMQ  143 (400)
T ss_pred             HHHHhc----------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH------HHHHHHHHHHH
Confidence            888765                      67788999999999999899999999999999877      99999999999


Q ss_pred             HHHHHHHHHHHHHhhcccccchhhhHHHHHHHHHHHHHHHHccccccccCCCCChhhHHHHHHHHHHhhccccCCCCCcc
Q 008096          180 MGAAVLVAVTVLVYIQDNVGWNWGLGIPTVAMFLSIIAFVFGYPLYRNLNPAGSPFVRLMQVCVAAFRKRNLDMVSDPNV  259 (577)
Q Consensus       180 ~~ig~~lg~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (577)
                      .++|..+||.+++++. .+||++.|++.++..++..++.....|+.+. ++..++.++                      
T Consensus       144 ~~~g~~ig~~l~g~l~-~~g~~~~f~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~----------------------  199 (400)
T PRK11646        144 DSAGAVIGALLGSWLL-QYDFRLVCATGAVLFVLAAAFNAWLLPAYKL-STVRTPVRE----------------------  199 (400)
T ss_pred             HHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHHHhCCcccc-cccchhhHH----------------------
Confidence            9999999999999998 7899999998877655544433333222110 000000000                      


Q ss_pred             cccccchhhhhhcCCcccccccchhhhhhhhccccccCCCCCcccccchhhhhhhhhhhhhhhHHHHHHHHHHHhhccce
Q 008096          260 LYQNEELDASICLDGKLLHTKHMKFLDKAAIVTEEDDIKSPNLWRLNTVHRVEELKSVIRMGPIWASGILLITAYAQQGT  339 (577)
Q Consensus       260 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~l~~~~~~~~~~~~~~~~  339 (577)
                                                                .+     +...+.+........   ...++....+...
T Consensus       200 ------------------------------------------~~-----~~~~~~~~~~~~~~~---~~~~~~~~~~~~~  229 (400)
T PRK11646        200 ------------------------------------------GM-----TRVLRDKRFVTYVLT---LTGYYMLAVQVML  229 (400)
T ss_pred             ------------------------------------------HH-----HHHHcCchHHHHHHH---HHHHHHHHHHHHH
Confidence                                                      00     000001111111111   1111111111100


Q ss_pred             eEEeeccccccccccccccccchhhhhhHHHHHHHHHhhhhhhhhccccccCCCCCCCchhHHHHHHHHHHHHHHHHHHH
Q 008096          340 FSLQQAKSMDRHLTKSFQIPAGSMSVFTMVSMLSTIALYDRIIIPVARKFTGLDRGITFLHRMGIGFVISVLATLVAGFV  419 (577)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ig~~~~~l~~~~~~~~  419 (577)
                      +   .+.+.....  +.+...+.+.....+..+.....    ..+..+|+.      +..+.+..+..+.++++++....
T Consensus       230 ~---~p~~~~~~~--~~~~~~g~l~~~~~~~~~~~~~~----~~~~~~~r~------~~~~~~~~~~~~~~~~~~~l~~~  294 (400)
T PRK11646        230 M---LPIMVNDIA--GSPSAVKWMYAIEACLSLTLLYP----IARWSEKRF------RLEHRLMAGLLIMSLSMFPIGMV  294 (400)
T ss_pred             h---hhhhHHhhc--CCchHHHHHHHHHHHHHHHHHHH----HHHHHHHhc------chhHHHHHHHHHHHHHHHHHHHh
Confidence            0   111111111  11111222222232222222222    233333321      12223566666666666555443


Q ss_pred             HHHHHHHHHhcCCCCCCCccccchhhHHHHHHHHHHHHHHHHhhhhhhhhhcccCcccHHHHHHHHHHHHhHHHHHHHHH
Q 008096          420 EMKRKQAALAHGLVDKPHIIIPISVLWLVPQYSLHGIAEAFMSVGHLEFLYDQAPESMRSTATALFWTANSIGNYVSTLL  499 (577)
Q Consensus       420 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~gi~~~~~~~~~~~~v~~~~P~~~rg~~~gi~~~~~~lg~~l~~~i  499 (577)
                      .                      +.+.+....++.+++.+...|....++.+.+|++.||+++|+.+....+|..+++.+
T Consensus       295 ~----------------------~~~~~~~~~~l~~~g~~~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l  352 (400)
T PRK11646        295 S----------------------NLQQLFTLICLFYIGSIIAEPARETLSASLADARARGSYMGFSRLGLALGGAIGYIG  352 (400)
T ss_pred             h----------------------hHHHHHHHHHHHHHHHHHHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccc
Confidence            3                      333444455667888888888999999999999999999999999999999999999


Q ss_pred             HHHHhhhc
Q 008096          500 VTLVHKFS  507 (577)
Q Consensus       500 ~~~v~~~~  507 (577)
                      .|.+.+..
T Consensus       353 ~G~l~~~~  360 (400)
T PRK11646        353 GGWLFDLG  360 (400)
T ss_pred             hHHHHHHH
Confidence            99998764

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.94  E-value=5.4e-25  Score=239.10  Aligned_cols=155  Identities=13%  Similarity=0.172  Sum_probs=125.6

Q ss_pred             CCChHHHHHHHHHHhHhhhhchhhhhhhhhhccchhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCcccccccch
Q 008096           49 HMPLTKAANTLTNFGGTGSLTPLIGAFVADTYAGRFWTITVASIIYQIGMFSLTLSAILPQLRPPPCQGDQVCKEADTGQ  128 (577)
Q Consensus        49 g~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (577)
                      +.+..+.+++.+.+.++..+++++.|+++||+ |||+++..+.+++.++.+.++++...-.-.          ...+...
T Consensus        51 ~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~-Grr~~~~~~~~l~~i~~~~~~~~~~~~~~~----------~~~~~~~  119 (479)
T PRK10077         51 SAANSLLGFCVASALIGCIIGGALGGYCSNRF-GRRDSLKIAAVLFFISALGSAWPEFGFTSI----------GPDNTGY  119 (479)
T ss_pred             cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHhhccccccc----------cccchhH
Confidence            89999999999999999999999999999998 999999999999999888877642000000          0001224


Q ss_pred             hHHHHHHHHHHHhccCCcccchhhhhhccCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhc--------ccccc
Q 008096          129 LAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAVLVAVTVLVYIQ--------DNVGW  200 (577)
Q Consensus       129 ~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~lg~~i~~~l~--------~~~gw  200 (577)
                      +..++++|+++|++.|+..|...++++|++|+++      |++++++.+.+..+|.++++.+++.+.        +.+||
T Consensus       120 ~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~------rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gW  193 (479)
T PRK10077        120 VPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHI------RGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDGW  193 (479)
T ss_pred             HHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhh------hhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCCh
Confidence            5678899999999999999999999999999888      999999999999999999987765443        35799


Q ss_pred             hhhhHHHHHHHHHHHHHHHH
Q 008096          201 NWGLGIPTVAMFLSIIAFVF  220 (577)
Q Consensus       201 ~~~f~~~~~~~~~~~~~~~~  220 (577)
                      |+.|++.++..++..+..++
T Consensus       194 r~~f~~~~~~~~~~~~~~~~  213 (479)
T PRK10077        194 RYMFASEAIPALLFLMLLYF  213 (479)
T ss_pred             HHHHHHHHHHHHHHHHHHHc
Confidence            99999887766655444333

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.93  E-value=4.9e-24  Score=228.94  Aligned_cols=160  Identities=16%  Similarity=0.141  Sum_probs=138.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhHhhhhchhhhhhhhhhccchhHHHHHHHHHHHHHHHHHHHh
Q 008096           25 NEVCEKLAVVGFHANMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADTYAGRFWTITVASIIYQIGMFSLTLS  104 (577)
Q Consensus        25 ~~~~~~~~~~~~~~~l~~~l~~~lg~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~i~~~~~~~~  104 (577)
                      ..++..+..+.....+|.+. +++|+|.++.+++.+.+.++..+++++.|+++||+ |||+++.++.++..++.++++++
T Consensus        31 ~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-g~r~~~~~~~~~~~~~~~~~~~~  108 (434)
T PRK11663         31 GYALFYFTRKSFNAAMPEML-ADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRS-NARYFMGIGLIATGIINILFGFS  108 (434)
T ss_pred             HHHHHHHhhhhHHHhhHHHH-HhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhc-CCchhHHHHHHHHHHHHHHHHHH
Confidence            34444444445555565555 57999999999999999999999999999999998 99999999999999999988887


Q ss_pred             hhcCCCCCCCCCCCCcccccccchhHHHHHHHHHHHhccCCcccchhhhhhccCCCCCchhhhhhhhhhhHHHHHHHHHH
Q 008096          105 AILPQLRPPPCQGDQVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAV  184 (577)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~  184 (577)
                      .                      +++.+++.|++.|++.|...+...+++.|++|+++      |+++.++++.+.++|.
T Consensus       109 ~----------------------~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~------rg~~~~~~~~~~~~g~  160 (434)
T PRK11663        109 S----------------------SLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTE------RGGWWAIWNTAHNVGG  160 (434)
T ss_pred             h----------------------HHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHH------HHHHHHHHHHHHHHHH
Confidence            6                      67788899999999999999999999999999877      9999999999999999


Q ss_pred             HHHHHHHHhhcccccchhhhHHHHHHHHHH
Q 008096          185 LVAVTVLVYIQDNVGWNWGLGIPTVAMFLS  214 (577)
Q Consensus       185 ~lg~~i~~~l~~~~gw~~~f~~~~~~~~~~  214 (577)
                      .+++.+.+++.+.+|||+.|++.++..++.
T Consensus       161 ~~~~~~~~~l~~~~gw~~~f~~~~i~~~~~  190 (434)
T PRK11663        161 ALIPLVVGAIALHYGWRYGMMIAGIIAIVV  190 (434)
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence            999999999998899999998877655443

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=99.93  E-value=5.3e-24  Score=223.21  Aligned_cols=159  Identities=15%  Similarity=0.067  Sum_probs=125.7

Q ss_pred             HHHHHHHHHHHHhcCCChHHHHHHHHHHhHhhhhchhhhhhhhhhccchhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCC
Q 008096           35 GFHANMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADTYAGRFWTITVASIIYQIGMFSLTLSAILPQLRPPP  114 (577)
Q Consensus        35 ~~~~~l~~~l~~~lg~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  114 (577)
                      .......+.+++++|+|.++.+++.+.+.+++.+++++.|+++||+ |||+++..+.+....+.. +....         
T Consensus         8 ~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~-grr~~~~~~~~~~~~~~~-~~~~~---------   76 (368)
T TIGR00903         8 VTFSPVLSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRA-FKRWFLFGSLATFAAAAG-RLLDP---------   76 (368)
T ss_pred             HHHHhhHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-cchHHHHHHHHHHHHHHH-HHHHh---------
Confidence            3444444556779999999999999999999999999999999998 999887655544444332 22221         


Q ss_pred             CCCCCcccccccchhHHHHHHHHHHHhccCCcccchhhhhhccCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHHHHHhh
Q 008096          115 CQGDQVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAVLVAVTVLVYI  194 (577)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~lg~~i~~~l  194 (577)
                                  .++..+++.|+++|+|.+. .+...+.++|++|+++      |++++++.+.+..+|..+++++++++
T Consensus        77 ------------~~~~~l~~~R~l~G~g~~~-~~~~~~~~~~~~~~~~------r~~a~~~~~~~~~lG~~l~~~~~~~l  137 (368)
T TIGR00903        77 ------------FNYEWLLACQLLAALGQPF-LLNAFAPAASQIREER------RDLVISLLSFAMYLGIIFALAAGLKI  137 (368)
T ss_pred             ------------ccHHHHHHHHHHHHhHhHH-HHHHHHHHHHHcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                        1678899999999999986 4566666799999877      99999999999999999999999999


Q ss_pred             cccccchhhhHHHHHHHHHHHHHHHHccc
Q 008096          195 QDNVGWNWGLGIPTVAMFLSIIAFVFGYP  223 (577)
Q Consensus       195 ~~~~gw~~~f~~~~~~~~~~~~~~~~~~~  223 (577)
                      .+.+|||+.|++.+++.++..+++....|
T Consensus       138 ~~~~gWr~~f~~~~~l~~~~~~~~~~~lp  166 (368)
T TIGR00903       138 YTAGGLQLLIIPIAAVAAAGIILVLAALP  166 (368)
T ss_pred             HHccchHHHHHHHHHHHHHHHHHHHHHcC
Confidence            99999999998876665554444444333

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.93  E-value=6e-24  Score=231.79  Aligned_cols=176  Identities=15%  Similarity=0.101  Sum_probs=130.6

Q ss_pred             cceehHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHH-HHH-----HHHHHhHhhhhchhhhhhhhhhccchhHHHHH
Q 008096           16 IITMPFIFANEVCEKLAVVGFHANMISYLTTQLHMPLTK-AAN-----TLTNFGGTGSLTPLIGAFVADTYAGRFWTITV   89 (577)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~lg~s~~~-~~~-----i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~   89 (577)
                      ++......+..+++.+.+. +..+...++.++++.+.++ ..+     +.++..++..+++++.|+++||+ |||+++.+
T Consensus        15 ~~~~~~~~~g~~~~~~d~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~-Grr~~l~~   92 (490)
T PRK10642         15 RKAITAASLGNAMEWFDFG-VYGFVAYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKY-GRQKILAI   92 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccHHHHHH
Confidence            4444444456666665544 4556667888887543322 122     24667788999999999999999 99999999


Q ss_pred             HHHHHHHHHHHHHHhhhcCCCCCCCCCCCCcccccccchhHHHHHHHHHHHhccCCcccchhhhhhccCCCCCchhhhhh
Q 008096           90 ASIIYQIGMFSLTLSAILPQLRPPPCQGDQVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKT  169 (577)
Q Consensus        90 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r  169 (577)
                      +++++.++++++++++++..              ........+++.|+++|+|.|+..++..++++|++|+++      |
T Consensus        93 ~~~l~~i~~~~~a~~~~~~~--------------~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~------R  152 (490)
T PRK10642         93 TIVIMSISTFCIGLIPSYAT--------------IGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRK------R  152 (490)
T ss_pred             HHHHHHHHHHHHHhcccHHH--------------HHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCC------C
Confidence            99999999999998762211              000011247899999999999999999999999999888      9


Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHhhc--------ccccchhhhHHHHHHHHH
Q 008096          170 WKYFNWYYFVMGAAVLVAVTVLVYIQ--------DNVGWNWGLGIPTVAMFL  213 (577)
Q Consensus       170 ~~~~~~~~~~~~ig~~lg~~i~~~l~--------~~~gw~~~f~~~~~~~~~  213 (577)
                      +++.++...+..+|..+|+.+...+.        ..+|||+.|++.++..++
T Consensus       153 g~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~~~~~~~gWR~~f~i~~~~~l~  204 (490)
T PRK10642        153 GFMGSWLDFGSIAGFVLGAGVVVLISTIVGEANFLDWGWRIPFFIALPLGII  204 (490)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhcCccHHHHHHHHHHHHHH
Confidence            99999988888888888876654432        257999999987665443

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.93  E-value=1.4e-23  Score=223.02  Aligned_cols=378  Identities=13%  Similarity=0.064  Sum_probs=243.6

Q ss_pred             ehHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHH-----HHHHHHHHhHhhhhchhhhhhhhhhccchhHHHHHHHHH
Q 008096           19 MPFIFANEVCEKLAVVGFHANMISYLTTQLHMPLTK-----AANTLTNFGGTGSLTPLIGAFVADTYAGRFWTITVASII   93 (577)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~lg~s~~~-----~~~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~   93 (577)
                      ...+....++..++.....+++|.|.+ ++|.+..+     .+++.+.+.++..+++++.|+++||+ |||+.+..+.++
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~   93 (408)
T PRK09874         16 LTVAWLGCFLTGAAFSLVMPFLPLYVE-QLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRK-GRKIMLLRSALG   93 (408)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhHHHHHH-HhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-CcHHHHHHHHHH
Confidence            444445777788888888889999885 58888655     48889999999999999999999998 999999999998


Q ss_pred             HHHHHHHHHHhhhcCCCCCCCCCCCCcccccccchhHHHHHHHHHHHhccCCcccchhhhhhccCCCCCchhhhhhhhhh
Q 008096           94 YQIGMFSLTLSAILPQLRPPPCQGDQVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYF  173 (577)
Q Consensus        94 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  173 (577)
                      ..++.+++.++.                      +++.+++.|++.|++.+ ..+...+++.|.+|+++      |+++.
T Consensus        94 ~~~~~~~~~~~~----------------------~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~------~~~~~  144 (408)
T PRK09874         94 MGIVMVLMGLAQ----------------------NIWQFLILRALLGLLGG-FVPNANALIATQVPRNK------SGWAL  144 (408)
T ss_pred             HHHHHHHHHHHh----------------------hHHHHHHHHHHHHHhhh-hHHhHHHHHHHhcCHhh------hhHHH
Confidence            888888877765                      67889999999999865 46788888999998877      89999


Q ss_pred             hHHHHHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHHHHHHHHHccccccccCCCCChhhHHHHHHHHHHhhccccC
Q 008096          174 NWYYFVMGAAVLVAVTVLVYIQDNVGWNWGLGIPTVAMFLSIIAFVFGYPLYRNLNPAGSPFVRLMQVCVAAFRKRNLDM  253 (577)
Q Consensus       174 ~~~~~~~~ig~~lg~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (577)
                      ++++.+.++|..++|.+++.+.+.++|++.|++.++..++..+......++.+..+++++ ..+..+             
T Consensus       145 ~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-------------  210 (408)
T PRK09874        145 GTLSTGGVSGALLGPLAGGLLADSYGLRPVFFITASVLFLCFLVTLFCIRENFQPVSKKE-MLHMRE-------------  210 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhccCcccccchh-hhHHHH-------------
Confidence            999999999999999999999888899999988887766555544443332111000000 000000             


Q ss_pred             CCCCcccccccchhhhhhcCCcccccccchhhhhhhhccccccCCCCCcccccchhhhhhhhhhhhhhhH-HHHHHHHHH
Q 008096          254 VSDPNVLYQNEELDASICLDGKLLHTKHMKFLDKAAIVTEEDDIKSPNLWRLNTVHRVEELKSVIRMGPI-WASGILLIT  332 (577)
Q Consensus       254 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~l-~~~~~~~~~  332 (577)
                                                    .                  +     +..++.+........ .........
T Consensus       211 ------------------------------~------------------~-----~~~~~~~~~~~~~~~~~~~~~~~~~  237 (408)
T PRK09874        211 ------------------------------V------------------V-----TSLKNPKLVLSLFVTTLIIQVATGS  237 (408)
T ss_pred             ------------------------------H------------------H-----HhCcCCchHHHHHHHHHHHHHHHHH
Confidence                                          0                  0     000011111101110 010111000


Q ss_pred             HhhccceeEEeeccccccccccccccccchhhhhhHHHHHHHHHhhhhhhhhccccccCCCCCCCchhHHHHHHHHHHHH
Q 008096          333 AYAQQGTFSLQQAKSMDRHLTKSFQIPAGSMSVFTMVSMLSTIALYDRIIIPVARKFTGLDRGITFLHRMGIGFVISVLA  412 (577)
Q Consensus       333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ig~~~~~l~  412 (577)
                      .....+.+.....    .... ......+.+.....+..++..+..++    +.||.++|+.       +..+..+..++
T Consensus       238 ~~~~~~~~~~~~~----~~~~-~~~~~~g~~~~~~~l~~~~~~~~~g~----l~dr~g~~~~-------~~~~~~~~~~~  301 (408)
T PRK09874        238 IAPILTLYVRELA----GNVS-NIAFISGMIASVPGVAALLSAPRLGK----LGDRIGPEKI-------LITALIFSVLL  301 (408)
T ss_pred             HHHHHHHHHHHHh----ccch-HHHHHHHHHHHHHHHHHHHHHHHHHH----HHhccccchh-------HHHHHHHHHHH
Confidence            0000000100000    0000 00000122223333444455555444    6666655443       55565555555


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCCCCccccchhhHHHHHHHHHHHHHHHHhhhhhhhhhcccCcccHHHHHHHHHHHHhHH
Q 008096          413 TLVAGFVEMKRKQAALAHGLVDKPHIIIPISVLWLVPQYSLHGIAEAFMSVGHLEFLYDQAPESMRSTATALFWTANSIG  492 (577)
Q Consensus       413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~gi~~~~~~~~~~~~v~~~~P~~~rg~~~gi~~~~~~lg  492 (577)
                      ++......                      +.+.+.+..++.+++.+...+.....+.+..|++.+|+.+|+.+....+|
T Consensus       302 ~~~~~~~~----------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g  359 (408)
T PRK09874        302 LIPMSFVQ----------------------TPLQLGILRFLLGAADGALLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIG  359 (408)
T ss_pred             HHHHHHhc----------------------cHHHHHHHHHHHHhhhHhhHHHHHHHHHHhCCcccceeeehHHHHHHHHH
Confidence            44433322                      34444556677888888889998888999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhcCCCCCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhhhhh
Q 008096          493 NYVSTLLVTLVHKFSAGPNGSNWLPDNNLNKGKLEYFYWLITLLQVVNVIYYFFCAK  549 (577)
Q Consensus       493 ~~l~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  549 (577)
                      ..+++.+.+.+.+..                 ++...|++.+++.+++.+..++..+
T Consensus       360 ~~~gp~~~G~l~~~~-----------------g~~~~f~~~~~~~l~~~~~~~~~~~  399 (408)
T PRK09874        360 NVTGPLMGAAISANY-----------------GFRAVFLVTAGVVLFNAVYSWNSLR  399 (408)
T ss_pred             HHhhHHHHHHHHhhc-----------------chhHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999875533                 2345577777777777766655443

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.93  E-value=1e-23  Score=224.83  Aligned_cols=181  Identities=13%  Similarity=0.093  Sum_probs=150.5

Q ss_pred             CCCcceehHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhHhhhhchhhhhhhhhhccchhHHHHHHHH
Q 008096           13 KGGIITMPFIFANEVCEKLAVVGFHANMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADTYAGRFWTITVASI   92 (577)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~lg~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~   92 (577)
                      |.+|+.++...+..+++..... ...+....+++++|+|.++.+++.+.+.++..+++++.|+++||+ |||+++..+++
T Consensus         4 ~~~~~~~~~~~~~~~~~~~d~~-~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-G~r~~~~~~~~   81 (412)
T TIGR02332         4 KLFRRLIIFLFILFIFSFLDRI-NIGFAGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAII-GARRWIAGIMV   81 (412)
T ss_pred             eehhHHHHHHHHHHHHHHhhhh-hHHHHHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHh-ChHHHHHHHHH
Confidence            4456655555555555544444 444455589999999999999999999999999999999999998 99999999999


Q ss_pred             HHHHHHHHHHHhhhcCCCCCCCCCCCCcccccccchhHHHHHHHHHHHhccCCcccchhhhhhccCCCCCchhhhhhhhh
Q 008096           93 IYQIGMFSLTLSAILPQLRPPPCQGDQVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKY  172 (577)
Q Consensus        93 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~  172 (577)
                      +..++.+++++++                      +.+.+++.|++.|++.+...|...+++.|++|+++      |+++
T Consensus        82 ~~~~~~~~~~~~~----------------------~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------rg~~  133 (412)
T TIGR02332        82 LWGIASTATMFAT----------------------GPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYF------RARA  133 (412)
T ss_pred             HHHHHHHHHHHhc----------------------CHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHH------HHHH
Confidence            9999999999876                      67789999999999999999999999999999777      9999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHhhcc------cccchhhhHHHHHHHHHHHHHHHHccc
Q 008096          173 FNWYYFVMGAAVLVAVTVLVYIQD------NVGWNWGLGIPTVAMFLSIIAFVFGYP  223 (577)
Q Consensus       173 ~~~~~~~~~ig~~lg~~i~~~l~~------~~gw~~~f~~~~~~~~~~~~~~~~~~~  223 (577)
                      .++++.+..+|..+++.+++++.+      ..|||+.|++.++..++..++..+..|
T Consensus       134 ~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~  190 (412)
T TIGR02332       134 NALFMIAMPVTMALGLILSGYILALDGLMALKGWQWLFLLEGFPSVILGVMTWFWLD  190 (412)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccchhHHHHHHHHHHHHHHHHHhhccC
Confidence            999999999999999999988763      369999999987766554444433333

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=99.93  E-value=3e-24  Score=237.63  Aligned_cols=335  Identities=27%  Similarity=0.480  Sum_probs=268.0

Q ss_pred             HHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhHhhhhchhhhhhhhhhccchhHHHHHHHHHHHHHHHHHHHhhhcCCC
Q 008096           31 LAVVGFHANMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADTYAGRFWTITVASIIYQIGMFSLTLSAILPQL  110 (577)
Q Consensus        31 ~~~~~~~~~l~~~l~~~lg~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~~  110 (577)
                      +++|++.+.+..|+.+.+|++.+++..+...+.....+.++++|+++|++.||++++.++.+++.+|..+++++. .|..
T Consensus         1 FsyYGm~aiLvlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a-~~~~   79 (654)
T TIGR00926         1 FSYYGMRTILVLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGA-IPSS   79 (654)
T ss_pred             CceeecHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhcc-Cccc
Confidence            468999999999999999999999999999999999999999999999999999999999999999999988754 2210


Q ss_pred             CCCCCCCCCcccccccchhHHHHHHHHHHHhccCCcccchhhhhhccCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHHH
Q 008096          111 RPPPCQGDQVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAVLVAVTV  190 (577)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~lg~~i  190 (577)
                                   .........+++..+.++|.|+..|+..+..+|++++++.++   |.++++++|++.|+|+++++++
T Consensus        80 -------------~~~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~~~---~~s~F~~fY~~iNiGSlis~~i  143 (654)
T TIGR00926        80 -------------GHPLHDLLDLLGLALIALGTGGIKPCVSAFGGDQFEERQLSL---RSRFFSFFYFAINAGSLISTII  143 (654)
T ss_pred             -------------ccchHHHHHHHHHHHHHhhccccccCchhhhHhhcCccchhH---HHHHHHHHHHHHHHHHHHHHHH
Confidence                         011234557788999999999999999999999998654333   8889999999999999999999


Q ss_pred             HHhhccc-------ccchhhhHHHHHHHHHHHHHHHHccccccccCCCCChhhHHHHHHHHHHhhccccCCCCCcccccc
Q 008096          191 LVYIQDN-------VGWNWGLGIPTVAMFLSIIAFVFGYPLYRNLNPAGSPFVRLMQVCVAAFRKRNLDMVSDPNVLYQN  263 (577)
Q Consensus       191 ~~~l~~~-------~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  263 (577)
                      .+++.++       .+|..+|.+++++++++++++...++++++.+|.+++..+..+++..+.+++....++.       
T Consensus       144 ~~~l~~~~~~fg~~~~~~~aF~i~~i~m~ia~lvf~~g~k~y~~~~p~gs~l~~v~~vi~~a~~~~~~~~~~~-------  216 (654)
T TIGR00926       144 TPILRGDVGCFGCQDCYPLAFGVPAILMILALIVFMAGSKMYKKKPPKGNIVSKVIKCIVTALRKRFSTRSEH-------  216 (654)
T ss_pred             HHHHHHhhcccccCcchHHHHHHHHHHHHHHHHHHHHhccccCCCCCCccHHHHHHHHHHHHHHHhhccCCcc-------
Confidence            9998744       36999999999999999998888888777777777777776666666665432211100       


Q ss_pred             cchhhhhhcCCcccccccchhhhhhhhccccccCCCCCcccccchhhhhhhhhhhhhhhHHHHHHHHHHHhhccceeEEe
Q 008096          264 EELDASICLDGKLLHTKHMKFLDKAAIVTEEDDIKSPNLWRLNTVHRVEELKSVIRMGPIWASGILLITAYAQQGTFSLQ  343 (577)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~l~~~~~~~~~~~~~~~~~~~~  343 (577)
                                      ...+++|.+....              ..+.++++|++++.+++++..+.+|..+.|+.+.+..
T Consensus       217 ----------------~~~~~ld~a~~~~--------------~~~~V~evkrll~il~l~i~~~ifw~~~~Q~~s~~~~  266 (654)
T TIGR00926       217 ----------------WPLHWLDYAKDKH--------------DIRMIRSTKRLLRVLVLFIPLPMFWALFDQQGSRWTL  266 (654)
T ss_pred             ----------------cchhHHHHhcccc--------------ccchHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHH
Confidence                            0012333221110              1234567889999999999999999999999988788


Q ss_pred             eccccccccccccccccchhhhhhHHHHHHHHHhhhhhhhhccccccCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHH
Q 008096          344 QAKSMDRHLTKSFQIPAGSMSVFTMVSMLSTIALYDRIIIPVARKFTGLDRGITFLHRMGIGFVISVLATLVAGFVEMKR  423 (577)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ig~~~~~l~~~~~~~~~~~~  423 (577)
                      |+..++.+++ ++.+++.++..++++.+++..|++++.+.|..+|.+.+   .+++.++.+|+++.++++.++...+.+.
T Consensus       267 qa~~m~~~l~-g~~ip~~~lq~~n~L~IIil~Pi~~~~lyp~l~~~~~~---ls~l~k~~iG~~la~la~~va~~ve~~~  342 (654)
T TIGR00926       267 QATRMDGDVG-GFEIQPDQMQVVNPLLILIFVPIFDYIVYPAIAKCGTR---FTSLRKMAVGGLLAALSFFVAALVQLKV  342 (654)
T ss_pred             HHHHhcCccC-CEecCHHHHHHHHHHHHHHhHHHHHHhHHHHHHhcCCC---CChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8887777765 67889999999999999999999987777777665432   3789999999999999998888876554

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.93  E-value=1.2e-23  Score=229.60  Aligned_cols=400  Identities=13%  Similarity=0.017  Sum_probs=243.5

Q ss_pred             cceehHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhHhhhhchhhhhhhhhhccchhHHHHHHHHHHH
Q 008096           16 IITMPFIFANEVCEKLAVVGFHANMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADTYAGRFWTITVASIIYQ   95 (577)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~lg~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~   95 (577)
                      |..+..+....++..+..-.+..-+| .+.+++|.+.++.+|+.+.+.++..++.++.|+++||+ |||+++.++.++..
T Consensus         5 ~~~~~~~~~~~~~~~ld~tiv~~a~p-~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~-Grk~~l~~~~~~~~   82 (495)
T PRK14995          5 WLTLVIIVLVYIPVAIDATVLHVAAP-TLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRI-GFKRLLMLGGTLFG   82 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHH
Confidence            44444444455555555444444444 45678999999999999999999999999999999998 99999999999999


Q ss_pred             HHHHHHHHhhhcCCCCCCCCCCCCcccccccchhHHHHHHHHHHHhccCCcccchhhhhhccCC-CCCchhhhhhhhhhh
Q 008096           96 IGMFSLTLSAILPQLRPPPCQGDQVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFD-ETDPKQATKTWKYFN  174 (577)
Q Consensus        96 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~-~~~~~~~~~r~~~~~  174 (577)
                      ++.++++++.                      +.+.++++|+++|+|.++..|...+.+.+.++ +++      |+++++
T Consensus        83 ~~~~~~~~a~----------------------~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~------r~~~~g  134 (495)
T PRK14995         83 LASLAAAFSP----------------------TASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQ------RNMALG  134 (495)
T ss_pred             HHHHHHHHcC----------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHH------HHHHHH
Confidence            9999999876                      78889999999999999999988888888774 444      999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHHHHHHHHHccccccccCCCCChhhHHHH------HHHHHHhh
Q 008096          175 WYYFVMGAAVLVAVTVLVYIQDNVGWNWGLGIPTVAMFLSIIAFVFGYPLYRNLNPAGSPFVRLMQ------VCVAAFRK  248 (577)
Q Consensus       175 ~~~~~~~ig~~lg~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~  248 (577)
                      ++....++|..+||.+++++.+.+|||+.|++.....++..++.....|+.+.++.++.+......      .+.....+
T Consensus       135 ~~~~~~~~g~~~gp~lgg~l~~~~gwr~~f~i~~~~~~~~~~l~~~~l~~~~~~~~~~~d~~g~~~~~~~~~~l~~~~~~  214 (495)
T PRK14995        135 VWAAVGSGGAAFGPLVGGILLEHFYWGSVFLINVPIVLVVMGLTARYVPRQAGRRDQPLNLGHALMLIVAILLLVYSAKT  214 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCChHhHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999998777666555544444432221111111111000      00111111


Q ss_pred             ccccCCCCCcccccccchhhhhhcCCcccccccchhhhhhhhccccccCCCCCcccccchhhhhhhhhhhhhhh-HHHHH
Q 008096          249 RNLDMVSDPNVLYQNEELDASICLDGKLLHTKHMKFLDKAAIVTEEDDIKSPNLWRLNTVHRVEELKSVIRMGP-IWASG  327 (577)
Q Consensus       249 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~-l~~~~  327 (577)
                      .. +...+...... .-.         ..     ..+.......+.+...+..+++.++      .+....... .+...
T Consensus       215 ~~-~~~~~~~~~~~-~~~---------~~-----~~~l~~f~~~e~~~~~p~~~~~lf~------~~~~~~~~~~~~~~~  272 (495)
T PRK14995        215 AL-KGFLSLWVTSL-TLL---------TG-----ALLLGLFIRTQLAASRPMIDMRLFT------HRIILSGVVMAMTAM  272 (495)
T ss_pred             cc-ccCCchHHHHH-HHH---------HH-----HHHHHHHHHHHhcCCCCCcCHHHhC------CcccHHHHHHHHHHH
Confidence            00 00000000000 000         00     0000000001100111112222111      111111111 11111


Q ss_pred             HHHHHHhhccceeEEeeccccccccccccc-cccchhhhhhHHHHHHHHHhhhhhhhhccccccCCCCCCCchhHHHHHH
Q 008096          328 ILLITAYAQQGTFSLQQAKSMDRHLTKSFQ-IPAGSMSVFTMVSMLSTIALYDRIIIPVARKFTGLDRGITFLHRMGIGF  406 (577)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ig~  406 (577)
                      ..++......+.       ++....  +++ ...+.......+...+..++.++    +.||+++|+.       +..|+
T Consensus       273 ~~~~~~~~~~~~-------~lq~v~--g~s~~~ag~~~~~~~~~~~~~~~~~g~----l~~r~g~~~~-------~~~g~  332 (495)
T PRK14995        273 ITLVGFELLMAQ-------ELQFVH--GLSPLEAGMFMLPVMVASGFSGPIAGI----LVSRLGLRLV-------ATGGM  332 (495)
T ss_pred             HHHHHHHHHHHH-------HHHHHc--CCCHHHHHHHHHHHHHHHHHHHHHHHH----HHHHcCchHH-------HHHHH
Confidence            111111110011       111111  111 12333444444555566666554    6666654332       56677


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccccchhhHHHHHHHHHHHHHHHHhhhhhhhhhcccCcccHHHHHHHHH
Q 008096          407 VISVLATLVAGFVEMKRKQAALAHGLVDKPHIIIPISVLWLVPQYSLHGIAEAFMSVGHLEFLYDQAPESMRSTATALFW  486 (577)
Q Consensus       407 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~gi~~~~~~~~~~~~v~~~~P~~~rg~~~gi~~  486 (577)
                      ++.++++.+.....                   ...+.+......++.|++.+...+.....+.+.+|++.++.+.++.+
T Consensus       333 ~~~~~~~~~l~~~~-------------------~~~~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~g~~~~~~~  393 (495)
T PRK14995        333 ALSALSFYGLAMTD-------------------FSTQQWQAWGLMALLGFSAASALLASTSAIMAAAPPEKAAAAGAIET  393 (495)
T ss_pred             HHHHHHHHHHHHhc-------------------CCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCHHhcchHHHHHH
Confidence            77766665544332                   11233344556788899999999999999999999999999999999


Q ss_pred             HHHhHHHHHHHHHHHHHhhh
Q 008096          487 TANSIGNYVSTLLVTLVHKF  506 (577)
Q Consensus       487 ~~~~lg~~l~~~i~~~v~~~  506 (577)
                      +.+.+|+.+|+.+.+.+.+.
T Consensus       394 ~~~~lG~~~G~ai~g~i~~~  413 (495)
T PRK14995        394 MAYELGAGLGIAIFGLLLSR  413 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999998653

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.93  E-value=1.7e-23  Score=221.77  Aligned_cols=358  Identities=13%  Similarity=0.051  Sum_probs=229.8

Q ss_pred             HHHHHHHHHHHHHhcCCChHHHHHHHHHHhHhhhhchhhhhhhhhhccchhHHHHHHHHHHHHHHHHHHHhhhcCCCCCC
Q 008096           34 VGFHANMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADTYAGRFWTITVASIIYQIGMFSLTLSAILPQLRPP  113 (577)
Q Consensus        34 ~~~~~~l~~~l~~~lg~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  113 (577)
                      +.+.+.+| .+++++|+|.++.+++.+.+.++..+++++.|+++||+ |||+++..+.+++.++.+.+++++        
T Consensus        26 ~~~~~~lp-~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~-G~r~~l~~~~~l~~~~~~~~~~a~--------   95 (393)
T PRK09705         26 TSVGPLLP-QLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHV-SERRSVAISLLLIAVGALMRELYP--------   95 (393)
T ss_pred             hccchhHH-HHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHh-CchHHHHHHHHHHHHHHHHHHHCc--------
Confidence            44444444 56789999999999999999999999999999999999 999999999999999999999977        


Q ss_pred             CCCCCCcccccccchhHHHHHHHHHHHhccCCcccchhhhhhccCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHHHHHh
Q 008096          114 PCQGDQVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAVLVAVTVLVY  193 (577)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~lg~~i~~~  193 (577)
                                    +++.++++|+++|+|.+...+...+++.|++| ++      |+++.+.+..+.+.|..+|+.++++
T Consensus        96 --------------~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~~------~~~~~g~~~~~~~~g~~~g~~~~~~  154 (393)
T PRK09705         96 --------------QSALLLSSALLGGVGIGIIQAVMPSVIKRRFQ-QR------TPLVMGLWSAALMGGGGLGAAITPW  154 (393)
T ss_pred             --------------chHHHHHHHHHHHhHHHHHhhhhhHHHHHHcc-cc------chhHHHHHHHHHHHHHHHHHHHHHH
Confidence                          67779999999999999999999999999987 66      8999999999999999999999998


Q ss_pred             hcccc-cchhhhHHHHHHHHHHHHHHHHccccccccCCCCChhhHHHHHHHHHHhhccccCCCCCcccccccchhhhhhc
Q 008096          194 IQDNV-GWNWGLGIPTVAMFLSIIAFVFGYPLYRNLNPAGSPFVRLMQVCVAAFRKRNLDMVSDPNVLYQNEELDASICL  272 (577)
Q Consensus       194 l~~~~-gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  272 (577)
                      +.+.. +||+.+.+.++..++....+....++    +|+.+                     ++++              
T Consensus       155 l~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~---------------------~~~~--------------  195 (393)
T PRK09705        155 LVQHSETWYQTLAWWALPAVVALFAWWWQSAR----EVASS---------------------HKTT--------------  195 (393)
T ss_pred             HHHhcCCHHHHHHHHHHHHHHHHHHHHHHhcC----CCccc---------------------cCCC--------------
Confidence            87765 89988766555444333333222211    11100                     0000              


Q ss_pred             CCcccccccchhhhhhhhccccccCCCCCcccccchhhhhhhhhhhhhhhHHHHHHHHHHHhhccceeEEeecccccccc
Q 008096          273 DGKLLHTKHMKFLDKAAIVTEEDDIKSPNLWRLNTVHRVEELKSVIRMGPIWASGILLITAYAQQGTFSLQQAKSMDRHL  352 (577)
Q Consensus       273 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  352 (577)
                                                 ..+.+..     .+.+.........+....++......+.+.. + ...+   
T Consensus       196 ---------------------------~~~~~~l-----~~~~~~~l~~~~~~~~~~~~~~~~~lp~~l~-~-~g~s---  238 (393)
T PRK09705        196 ---------------------------TTPVRVV-----FTPRAWTLGVYFGLINGGYASLIAWLPAFYI-E-IGAS---  238 (393)
T ss_pred             ---------------------------cCCcccc-----cCHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-H-cCCC---
Confidence                                       0000000     0111111111111112222222222222211 0 0111   


Q ss_pred             ccccccccchhhhhhHHHHHHHHHhhhhhhhhccccccCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 008096          353 TKSFQIPAGSMSVFTMVSMLSTIALYDRIIIPVARKFTGLDRGITFLHRMGIGFVISVLATLVAGFVEMKRKQAALAHGL  432 (577)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ig~~~~~l~~~~~~~~~~~~~~~~~~~~~  432 (577)
                          ....+.......+..+++..+.    +++.||.++|+.       +.+++.+..+++.+.....            
T Consensus       239 ----~~~ag~~~~~~~i~~i~g~~~~----g~l~~r~~~~~~-------~~~~~~l~~~~~~~~~~~~------------  291 (393)
T PRK09705        239 ----AQYSGSLLALMTLGQAAGALLM----PAMARHQDRRKL-------LMLALVLQLVGFCGFIWLP------------  291 (393)
T ss_pred             ----hhhhhHHHHHHHHHHHHHHHHH----HHHHhhccchHH-------HHHHHHHHHHHHHHHHHcc------------
Confidence                1113334444555555555554    446666554332       5566666666655443222            


Q ss_pred             CCCCCccccchhhHHHHHHHHHHHHHHHHhhhhhhhhhcccC-cccHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCCC
Q 008096          433 VDKPHIIIPISVLWLVPQYSLHGIAEAFMSVGHLEFLYDQAP-ESMRSTATALFWTANSIGNYVSTLLVTLVHKFSAGPN  511 (577)
Q Consensus       433 ~~~~~~~~~~~~~~l~~~~~l~gi~~~~~~~~~~~~v~~~~P-~~~rg~~~gi~~~~~~lg~~l~~~i~~~v~~~~~~~~  511 (577)
                               .+...+  ..++.+++.+...+.......+..| ++.+|+.+|+.+....++..++|.+.+++.|..+   
T Consensus       292 ---------~~~~~~--~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g---  357 (393)
T PRK09705        292 ---------LQLPVL--WAMVCGLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISG---  357 (393)
T ss_pred             ---------chHHHH--HHHHHHHhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---
Confidence                     111111  2244567777777777766667764 6889999999999999999999999999887652   


Q ss_pred             CCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhhhhhccc
Q 008096          512 GSNWLPDNNLNKGKLEYFYWLITLLQVVNVIYYFFCAKIYT  552 (577)
Q Consensus       512 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  552 (577)
                                   ++...|...+..+++..++.+.+.+|++
T Consensus       358 -------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~  385 (393)
T PRK09705        358 -------------NYLMDWAFHALCVVGLMIITLRFAPARF  385 (393)
T ss_pred             -------------CchHHHHHHHHHHHHHHHHHHHhccccc
Confidence                         1233455656666666666666655543

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.93  E-value=4.6e-23  Score=218.55  Aligned_cols=177  Identities=10%  Similarity=0.121  Sum_probs=154.7

Q ss_pred             cccCCCcceehHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhHhhhhchhhhhhhhhhccchhHHHHH
Q 008096           10 NRKKGGIITMPFIFANEVCEKLAVVGFHANMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADTYAGRFWTITV   89 (577)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~lg~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~   89 (577)
                      .+.|..|+....+....++.....|...+.+|.+ .+++|+|.++.++..+.+.++..+++++.|+++||+ |||+.+..
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~-grr~~~~~   90 (394)
T PRK10213         13 AITRPNWSAVFSVAFCVACLIIVEFLPVSLLTPM-AQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQAT-DRRYVVIL   90 (394)
T ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHH-HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccc-CcHHHHHH
Confidence            4557788877766666666666667777777664 568999999999999999999999999999999998 99999999


Q ss_pred             HHHHHHHHHHHHHHhhhcCCCCCCCCCCCCcccccccchhHHHHHHHHHHHhccCCcccchhhhhhccCCCCCchhhhhh
Q 008096           90 ASIIYQIGMFSLTLSAILPQLRPPPCQGDQVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKT  169 (577)
Q Consensus        90 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r  169 (577)
                      +.++..++.+.++++.                      +.+.+++.|+++|++.+...|...+++.|++|+++      |
T Consensus        91 ~~~~~~~~~~~~~~~~----------------------~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~------~  142 (394)
T PRK10213         91 FAVLLTLSCLLVSFAN----------------------SFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRT------V  142 (394)
T ss_pred             HHHHHHHHHHHHHHHC----------------------hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhH------H
Confidence            9999999988888765                      78889999999999999999999999999999877      9


Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHHHHH
Q 008096          170 WKYFNWYYFVMGAAVLVAVTVLVYIQDNVGWNWGLGIPTVAMFLSII  216 (577)
Q Consensus       170 ~~~~~~~~~~~~ig~~lg~~i~~~l~~~~gw~~~f~~~~~~~~~~~~  216 (577)
                      +++.++...+.++|..+||.+++++.+.+|||+.|++.++..++..+
T Consensus       143 ~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l~~~~~l  189 (394)
T PRK10213        143 PKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAVMGVLCIF  189 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999887765554433

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.92  E-value=2e-23  Score=220.73  Aligned_cols=175  Identities=11%  Similarity=0.160  Sum_probs=152.7

Q ss_pred             ccCCCcceehHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhHhhhhchhhhhhhhhhccchhHHHHHH
Q 008096           11 RKKGGIITMPFIFANEVCEKLAVVGFHANMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADTYAGRFWTITVA   90 (577)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~lg~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~   90 (577)
                      ..+.+|+......+..+.+.+..+......+ .+++++|+|..+.+++.+.+.++..++.++.|+++||+ |||+++.++
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~-g~r~~~~~~   83 (405)
T TIGR00891         6 LTRAQWNAFSAAWLGWLLDAFDFFLVALVLA-EVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRY-GRRLPMVTS   83 (405)
T ss_pred             CCcccHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHH
Confidence            4467788877877888888887776666655 56789999999999999999999999999999999998 999999999


Q ss_pred             HHHHHHHHHHHHHhhhcCCCCCCCCCCCCcccccccchhHHHHHHHHHHHhccCCcccchhhhhhccCCCCCchhhhhhh
Q 008096           91 SIIYQIGMFSLTLSAILPQLRPPPCQGDQVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTW  170 (577)
Q Consensus        91 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~  170 (577)
                      .++..++.++++++.                      +++.+++.|++.|++.+...+...+++.|++|+++      |+
T Consensus        84 ~~~~~~~~~~~~~~~----------------------~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~------~~  135 (405)
T TIGR00891        84 IVLFSAGTLACGFAP----------------------GYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHL------RN  135 (405)
T ss_pred             HHHHHHHHHHHHHhc----------------------cHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhh------hh
Confidence            999999988888765                      67889999999999999999999999999999887      99


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHhhccccc--chhhhHHHHHHHHHHH
Q 008096          171 KYFNWYYFVMGAAVLVAVTVLVYIQDNVG--WNWGLGIPTVAMFLSI  215 (577)
Q Consensus       171 ~~~~~~~~~~~ig~~lg~~i~~~l~~~~g--w~~~f~~~~~~~~~~~  215 (577)
                      ++.++++.+..+|..+++.+.+.+.+..+  |++.|++.++..++.+
T Consensus       136 ~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~w~~~f~~~~~~~~~~~  182 (405)
T TIGR00891       136 KASGLLISGYAVGAVVAAQVYSLVVPVWGDGWRALFFISILPIIFAL  182 (405)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHH
Confidence            99999999999999999999998877665  9999987665544443

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.92  E-value=2.4e-23  Score=216.74  Aligned_cols=358  Identities=13%  Similarity=0.058  Sum_probs=235.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhHhhhhchhhhhhhhhhccchhHHHHHHHHHHHHHHHH
Q 008096           21 FIFANEVCEKLAVVGFHANMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADTYAGRFWTITVASIIYQIGMFS  100 (577)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~l~~~l~~~lg~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~i~~~~  100 (577)
                      .++...++..++.......+|.|.. +++.|..+.+++.+.+.++..+++++.|+++||+ |||+++..+.++..++.++
T Consensus         3 ~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~-g~r~~~~~~~~~~~~~~~~   80 (365)
T TIGR00900         3 LLFAAQLISLIGTAITQVALPLYVL-AGTGSASVLSLAALAGMLPYVVLSPIAGALADRY-DRKKVMIGADLIRAVLVAV   80 (365)
T ss_pred             ehHHHHHHHHHHHHHHHHHHHHHHH-HhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhh-chhHHHHHHHHHHHHHHHH
Confidence            3455677777777777777888776 5799999999999999999999999999999998 9999999999988888877


Q ss_pred             HHHhhhcCCCCCCCCCCCCcccccccchhHHHHHHHHHHHhccCCcccchhhhhhccCCCCCchhhhhhhhhhhHHHHHH
Q 008096          101 LTLSAILPQLRPPPCQGDQVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVM  180 (577)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~  180 (577)
                      +++....+                 ..+.+.+++.|+++|++.+...|...+++.|++|+++      |++++++.+.+.
T Consensus        81 ~~~~~~~~-----------------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~  137 (365)
T TIGR00900        81 LPFVALLG-----------------GLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQ------LTQANSLSQAVR  137 (365)
T ss_pred             HHHHHHcC-----------------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH------HHHHHhHHHHHH
Confidence            77654111                 1267889999999999999999999999999999877      999999999999


Q ss_pred             HHHHHHHHHHHHhhcccccchhhhHHHHHHHHHHHHHHHHccccccccCCCCChhh-HHHHHHHHHHhhccccCCCCCcc
Q 008096          181 GAAVLVAVTVLVYIQDNVGWNWGLGIPTVAMFLSIIAFVFGYPLYRNLNPAGSPFV-RLMQVCVAAFRKRNLDMVSDPNV  259 (577)
Q Consensus       181 ~ig~~lg~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  259 (577)
                      .+|.++||.+++++.+..||++.|++.++..+++.+.....+++.++++ +.++.+ +..+                   
T Consensus       138 ~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-------------------  197 (365)
T TIGR00900       138 SLFYIVGPGIGGLMYATLGIKWAIWVDAVGFAISALLIVSVRIPELAAS-EIQALSNAVLR-------------------  197 (365)
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcccccCCCc-cccccchhHHH-------------------
Confidence            9999999999999998899999998887766655544443322111100 000000 0000                   


Q ss_pred             cccccchhhhhhcCCcccccccchhhhhhhhccccccCCCCCcccccchhhhhhhhhhhhhhhH-HHHHHHHHHHh-hcc
Q 008096          260 LYQNEELDASICLDGKLLHTKHMKFLDKAAIVTEEDDIKSPNLWRLNTVHRVEELKSVIRMGPI-WASGILLITAY-AQQ  337 (577)
Q Consensus       260 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~l-~~~~~~~~~~~-~~~  337 (577)
                           +                  ..               ..+     +...+.+.+...... ........... ...
T Consensus       198 -----~------------------~~---------------~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (365)
T TIGR00900       198 -----D------------------TR---------------EGI-----KFVLKNPLLRTLLLLALLFNLVFAPAIVALF  234 (365)
T ss_pred             -----H------------------HH---------------hHH-----HHHHcCcHHHHHHHHHHHHHHHHHHHHHHHh
Confidence                 0                  00               000     000011111111111 11111111111 111


Q ss_pred             ceeEEeeccccccccccccccccchhhhhhHHHHHHHHHhhhhhhhhccccccCCCCCCCchhHHHHHHHHHHHHHHHHH
Q 008096          338 GTFSLQQAKSMDRHLTKSFQIPAGSMSVFTMVSMLSTIALYDRIIIPVARKFTGLDRGITFLHRMGIGFVISVLATLVAG  417 (577)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ig~~~~~l~~~~~~  417 (577)
                      +.+       .....+ ......+.+.....+..++..++.+    ++.||.++++       .+..+..+.+++++...
T Consensus       235 ~~~-------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~~-------~~~~~~~~~~~~~~~~~  295 (365)
T TIGR00900       235 PYV-------QSKYLG-RGSTHYGWVLAAFGLGALLGALLLG----LLGRYFKRMA-------LMTGAIFVIGLAILVVG  295 (365)
T ss_pred             HHH-------HHHHhC-CchHHHHHHHHHHHHHHHHHHHHHH----HHHHHhchhH-------HHHHHHHHHHHHHHHHH
Confidence            111       111111 0001123333334444455555544    4555554332       24555555555555544


Q ss_pred             HHHHHHHHHHHhcCCCCCCCccccchhhHHHHHHHHHHHHHHHHhhhhhhhhhcccCcccHHHHHHHHHHHHhHHHHHHH
Q 008096          418 FVEMKRKQAALAHGLVDKPHIIIPISVLWLVPQYSLHGIAEAFMSVGHLEFLYDQAPESMRSTATALFWTANSIGNYVST  497 (577)
Q Consensus       418 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~gi~~~~~~~~~~~~v~~~~P~~~rg~~~gi~~~~~~lg~~l~~  497 (577)
                      ...                    + +.+...+..++.+++.+...+..+.++.+..|++.||++.|+.++...++..+++
T Consensus       296 ~~~--------------------~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~  354 (365)
T TIGR00900       296 LTP--------------------P-NFPLFLVLWFAIGVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGL  354 (365)
T ss_pred             hhc--------------------h-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            433                    1 2445566678889999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhh
Q 008096          498 LLVTLVHKF  506 (577)
Q Consensus       498 ~i~~~v~~~  506 (577)
                      .+.+.+.|.
T Consensus       355 ~~~g~l~~~  363 (365)
T TIGR00900       355 ILAGPLADH  363 (365)
T ss_pred             HHHHHHHHH
Confidence            999987664

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.92  E-value=6.7e-23  Score=214.94  Aligned_cols=169  Identities=10%  Similarity=0.060  Sum_probs=138.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhHhhhhchhhhhhhhhhccchhHHHHH-HHHHHHHHHHHH
Q 008096           23 FANEVCEKLAVVGFHANMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADTYAGRFWTITV-ASIIYQIGMFSL  101 (577)
Q Consensus        23 ~~~~~~~~~~~~~~~~~l~~~l~~~lg~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~-~~~~~~i~~~~~  101 (577)
                      +...++..++.....+.++.|+++++|.|..+.+++.+.+.+...+.+++.|+++||+ ||||.++. +.++..++.+++
T Consensus         3 ~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~-g~r~~~~~~~~~~~~~~~~~~   81 (375)
T TIGR00899         3 LLVAFLTGIAGALQFPTLSLFLSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQ-GDRKGLILFCCLLAALACLLF   81 (375)
T ss_pred             hHHHHHHHHHHHHHhhHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHHHHH
Confidence            3457778888888899999999999999999999999999999999999999999998 98887654 555555666677


Q ss_pred             HHhhhcCCCCCCCCCCCCcccccccchhHHHHHHHHHHHhccCCcccchhhhhhccCCCCCchhhhhhhh--hhhHHHHH
Q 008096          102 TLSAILPQLRPPPCQGDQVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWK--YFNWYYFV  179 (577)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~--~~~~~~~~  179 (577)
                      +++.                      +++.+++.|++++.+.+...|...++..|..|+++      |.+  ..+..+.+
T Consensus        82 ~~~~----------------------~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~------~~~~~~~~~~~~~  133 (375)
T TIGR00899        82 AWNR----------------------NYFLLLVLGVLLSSFASTANPQLFALAREHADRTG------REAVMFSSVMRAQ  133 (375)
T ss_pred             Hhcc----------------------hHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcc------hhhHHHHHHHHHH
Confidence            7654                      67778888999888888888888888888877544      443  36777788


Q ss_pred             HHHHHHHHHHHHHhhcccccchhhhHHHHHHHHHHHHHHHH
Q 008096          180 MGAAVLVAVTVLVYIQDNVGWNWGLGIPTVAMFLSIIAFVF  220 (577)
Q Consensus       180 ~~ig~~lg~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~  220 (577)
                      .++|..+||.+++++.+.+|||+.|++.++..++..+...+
T Consensus       134 ~~~g~~ig~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~  174 (375)
T TIGR00899       134 ISLAWVIGPPLAFWLALGFGFTVMFLTAALAFVLCGVLVWL  174 (375)
T ss_pred             HhHHHHHhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence            89999999999999998899999999988776655554444

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.92  E-value=1.1e-22  Score=208.97  Aligned_cols=183  Identities=13%  Similarity=0.110  Sum_probs=165.7

Q ss_pred             ccCCCcceehHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhHhhhhchhhhhhhhhhccchhHHHHHH
Q 008096           11 RKKGGIITMPFIFANEVCEKLAVVGFHANMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADTYAGRFWTITVA   90 (577)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~lg~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~   90 (577)
                      ..+..|..++.+-+..|+....=+.....+|. +.+++|.|..++|+.++.|.++..++.++...+.||+ .||+.++..
T Consensus         7 ~~~~~~~~l~aLa~~~F~igttEfv~~gLLp~-iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~-~Rr~lLl~~   84 (394)
T COG2814           7 ARKPMWLALLALALAAFAIGTTEFVPVGLLPP-IAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRL-ERRRLLLGL   84 (394)
T ss_pred             ccccchHHHHHHHHHHHHHHhHHHHHHhchHH-HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccc-chHHHHHHH
Confidence            34455666666666777777777777777765 5579999999999999999999999999999999998 999999999


Q ss_pred             HHHHHHHHHHHHHhhhcCCCCCCCCCCCCcccccccchhHHHHHHHHHHHhccCCcccchhhhhhccCCCCCchhhhhhh
Q 008096           91 SIIYQIGMFSLTLSAILPQLRPPPCQGDQVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTW  170 (577)
Q Consensus        91 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~  170 (577)
                      +.++.++.++++++.                      |++.+.++|++.|+..|.+++...++.+++.|+++      |+
T Consensus        85 l~lFi~~n~l~alAp----------------------~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~------~~  136 (394)
T COG2814          85 LALFIVSNLLSALAP----------------------SFAVLLLARALAGLAHGVFWSIAAALAARLVPPGK------RG  136 (394)
T ss_pred             HHHHHHHHHHHHHhc----------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccc------hh
Confidence            999999999999988                      88999999999999999999999999999999998      99


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHHHHHHHHHccc
Q 008096          171 KYFNWYYFVMGAAVLVAVTVLVYIQDNVGWNWGLGIPTVAMFLSIIAFVFGYP  223 (577)
Q Consensus       171 ~~~~~~~~~~~ig~~lg~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~  223 (577)
                      ++.++...+..++..+|..++.++.+.+|||.+|++.+...++.++..+...|
T Consensus       137 ~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GWR~~F~~ia~l~ll~~~~~~~~lP  189 (394)
T COG2814         137 RALALVFTGLTLATVLGVPLGTFLGQLFGWRATFLAIAVLALLALLLLWKLLP  189 (394)
T ss_pred             hHHHHHHHHHHHHHHHhccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            99999999999999999999999999999999999999888888777776666

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.92  E-value=8.6e-24  Score=229.20  Aligned_cols=178  Identities=10%  Similarity=-0.001  Sum_probs=138.1

Q ss_pred             ehHHHHHHHHHHHHHHHH---HHHHHHHHHHhcCCChHHHHHHHHHHhHhhhhchhhhhhhhhhccchhHHHHHHHHHHH
Q 008096           19 MPFIFANEVCEKLAVVGF---HANMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADTYAGRFWTITVASIIYQ   95 (577)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~---~~~l~~~l~~~lg~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~   95 (577)
                      .+.++...++.....|..   .....+.+.+++|+|.++.+++.+.+.+++.+++++.|+++||+ |||+++.+++++..
T Consensus        27 ~~~i~~~~~~~~~~~y~~r~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~-g~r~~l~~~~~~~~  105 (467)
T PRK09556         27 FMQSYLVVFIGYLTMYLIRKNFKAAQNDMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADGK-NTKQFLPFLLILSA  105 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHhcChhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhcc-CccchHHHHHHHHH
Confidence            343444444443333432   22334567789999999999999999999999999999999999 99999999988888


Q ss_pred             HHHHHHHHhhhcCCCCCCCCCCCCcccccccchhHHHHHHHHHHHhccCCcccchhhhhhccCCCCCchhhhhhhhhhhH
Q 008096           96 IGMFSLTLSAILPQLRPPPCQGDQVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNW  175 (577)
Q Consensus        96 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  175 (577)
                      ++.+.+++... .                ...+.+.+++.|++.|++.+...|...++++|++|+++      |++++++
T Consensus       106 ~~~~~~~~~~~-~----------------~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~------rg~a~gi  162 (467)
T PRK09556        106 ICMLGFGASLG-S----------------GSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRK------RGRFLGF  162 (467)
T ss_pred             HHHHHHHHHHh-c----------------ccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccc------eeeeEEe
Confidence            77776665310 0                01278889999999999999999999999999999988      9999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhcccc---cchhhhHHHHHHHHHHHHHHHH
Q 008096          176 YYFVMGAAVLVAVTVLVYIQDNV---GWNWGLGIPTVAMFLSIIAFVF  220 (577)
Q Consensus       176 ~~~~~~ig~~lg~~i~~~l~~~~---gw~~~f~~~~~~~~~~~~~~~~  220 (577)
                      +..+.++|.++++.+..++.+.+   +|+..|.+.++..++..+++++
T Consensus       163 ~~~~~~lG~~l~~~i~~~~~~~~~~~~~~~~f~~~g~~~~~~~i~~~~  210 (467)
T PRK09556        163 WNISHNLGGAGAGGVALWGANYFFDGHVIGMFIFPSIIALIIGFIGLR  210 (467)
T ss_pred             eecccchhhhHHHHHHHHHHHhhccCcchhHHHHHHHHHHHHHHHHHH
Confidence            99999999999998887765543   5888887766655444343333

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.92  E-value=1.2e-23  Score=219.80  Aligned_cols=338  Identities=12%  Similarity=0.069  Sum_probs=217.7

Q ss_pred             HHHHHHHHHHHHHHhcCCChHHHHHHHHHHhHhhhhchhhhhhhhhhccchhHHHHHHHHHHHHHHHHHHHhhhcCCCCC
Q 008096           33 VVGFHANMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADTYAGRFWTITVASIIYQIGMFSLTLSAILPQLRP  112 (577)
Q Consensus        33 ~~~~~~~l~~~l~~~lg~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~~~~  112 (577)
                      .|. ...+.+++.+++|+|.++.+++.+.+.++..+++++.|+++||+ |||+++.++.++..++.++++++.       
T Consensus        19 ~~~-~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~-G~r~~~~~~~~~~~~~~~~~~~~~-------   89 (377)
T TIGR00890        19 VYT-WTLLAPPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKF-GPRAVAMLGGILYGLGFTFYAIAD-------   89 (377)
T ss_pred             Hhh-hhhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHc-CccchhHHhHHHHHHHHHHHHHHH-------
Confidence            444 44556778889999999999999999999999999999999998 999999999999999999999877       


Q ss_pred             CCCCCCCcccccccchhHHHHHHHHHHHhccCCcccchhhhhhccCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 008096          113 PPCQGDQVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAVLVAVTVLV  192 (577)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~lg~~i~~  192 (577)
                                     +.+.+++.|++.|++.+...+.....+.+++| ++      |+++.++...+.++|..+++.+.+
T Consensus        90 ---------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~------~~~~~~~~~~~~~~g~~~~~~~~~  147 (377)
T TIGR00890        90 ---------------SLAALYLTYGLASAGVGIAYGIALNTAVKWFP-DK------RGLASGIIIGGYGLGSFILSPLIT  147 (377)
T ss_pred             ---------------HHHHHHHHHHHHhHHHHHHHHhHHHHHHHHcC-cc------cHHHHHHHHHhcchhHhHHHHHHH
Confidence                           78889999999999999888888888888887 44      889999999999999888777777


Q ss_pred             hhcccccchhhhHHHHHHHHHHHHHHHHccccccccCCCCChhhHHHHHHHHHHhhccccCCCCCcccccccchhhhhhc
Q 008096          193 YIQDNVGWNWGLGIPTVAMFLSIIAFVFGYPLYRNLNPAGSPFVRLMQVCVAAFRKRNLDMVSDPNVLYQNEELDASICL  272 (577)
Q Consensus       193 ~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  272 (577)
                      .+.+..|||+.|++.++..++..+......++.++++.+.                 +.+.   +     .         
T Consensus       148 ~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~---~-----~---------  193 (377)
T TIGR00890       148 SVINLEGVPAAFIYMGIIFLLVIVLGAFLIGYPPGQLIKT-----------------NIEV---S-----V---------  193 (377)
T ss_pred             HHHhcccHHHHHHHHHHHHHHHHHHHHHheecCchhcccc-----------------Cccc---c-----h---------
Confidence            7777789999999888776555444433322211100000                 0000   0     0         


Q ss_pred             CCcccccccchhhhhhhhccccccCCCCCcccccchhhhhhhhhhhhhhhHHHHHHHHHHHhhccceeEEeecccccccc
Q 008096          273 DGKLLHTKHMKFLDKAAIVTEEDDIKSPNLWRLNTVHRVEELKSVIRMGPIWASGILLITAYAQQGTFSLQQAKSMDRHL  352 (577)
Q Consensus       273 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  352 (577)
                             +.                  ...+     +..++++........................+       . .+.
T Consensus       194 -------~~------------------~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~-~~~  235 (377)
T TIGR00890       194 -------KD------------------YTVW-----EMLRTPQFWVLYLSFFLNAVSGLLLIGLYKPY-------G-QSL  235 (377)
T ss_pred             -------hh------------------hhHH-----HHHcCccHHHHHHHHHHHhHHHHHHHHHHHHH-------H-HHc
Confidence                   00                  0000     00001111111111111111110000000000       0 011


Q ss_pred             ccccc-cccchhhhhhHHHHHHHHHhhhhhhhhccccccCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 008096          353 TKSFQ-IPAGSMSVFTMVSMLSTIALYDRIIIPVARKFTGLDRGITFLHRMGIGFVISVLATLVAGFVEMKRKQAALAHG  431 (577)
Q Consensus       353 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ig~~~~~l~~~~~~~~~~~~~~~~~~~~  431 (577)
                        +.+ ...+.+.....+..++..++.++    +.||+++|+.       +.++.++.++++++.....           
T Consensus       236 --~~~~~~~~~~~~~~~~~~~~~~~~~g~----l~dr~g~~~~-------~~~~~~~~~~~~~~~~~~~-----------  291 (377)
T TIGR00890       236 --GLSDGFLVLAVSISSIFNGGGRPFLGA----LSDKIGRQKT-------MSIVFGISAVGMAAMLFIP-----------  291 (377)
T ss_pred             --CCCHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhhhhh-------hhHHHHHHHHHHHHHHHcc-----------
Confidence              111 11233444455555666666555    5566554433       5666666666665544332           


Q ss_pred             CCCCCCccccchhhHHHHHHHHHHHHHHHHhhhhhhhhhcccCcccHHHHHHHHHHHHhHHHHHHHHHHHHHhhh
Q 008096          432 LVDKPHIIIPISVLWLVPQYSLHGIAEAFMSVGHLEFLYDQAPESMRSTATALFWTANSIGNYVSTLLVTLVHKF  506 (577)
Q Consensus       432 ~~~~~~~~~~~~~~~l~~~~~l~gi~~~~~~~~~~~~v~~~~P~~~rg~~~gi~~~~~~lg~~l~~~i~~~v~~~  506 (577)
                               ..+....+...++.+++.+...+....++.|..|++.|+++.|+.+....+|..+++.+.+.+.+.
T Consensus       292 ---------~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~  357 (377)
T TIGR00890       292 ---------MLNDVLFLATVALVFFTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTE  357 (377)
T ss_pred             ---------cchhHHHHHHHHHHHHHhccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence                     112222233345556666666666777889999999999999999999999999999999987653

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.92  E-value=3.7e-23  Score=216.95  Aligned_cols=158  Identities=13%  Similarity=0.171  Sum_probs=139.9

Q ss_pred             HHHHHHHHHHHhcCCChHHHHHHHHHHhHhhhhchhhhhhhhhhccchhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCC
Q 008096           36 FHANMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADTYAGRFWTITVASIIYQIGMFSLTLSAILPQLRPPPC  115 (577)
Q Consensus        36 ~~~~l~~~l~~~lg~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  115 (577)
                      ......+++.+++|+|..+.+++.+.+.++..++.++.|+++||+ |||+++..+.++..++..+++++.          
T Consensus        12 ~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~r~~~~~~~~~~~~~~~~~~~~~----------   80 (399)
T TIGR00893        12 NLSFAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRF-GARKTLAVFIVIWGVFTGLQAFAG----------   80 (399)
T ss_pred             hhhHhHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhc-CcceeeHHHHHHHHHHHHHHHHHc----------
Confidence            334445568889999999999999999999999999999999998 999999999999999999888876          


Q ss_pred             CCCCcccccccchhHHHHHHHHHHHhccCCcccchhhhhhccCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhc
Q 008096          116 QGDQVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAVLVAVTVLVYIQ  195 (577)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~lg~~i~~~l~  195 (577)
                                  +++.+++.|++.|++.+...+...+++.|.+|+++      |++++++.+...++|..+++.+.+++.
T Consensus        81 ------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~~l~  142 (399)
T TIGR00893        81 ------------AYVSLYILRVLLGAAEAPFFPGIILIVASWFPASE------RATAVSIFNSAQGLGGIIGGPLVGWIL  142 (399)
T ss_pred             ------------CHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHH------HHHHHHHHHHhchHHHHHHHHHHHHHH
Confidence                        68889999999999999999999999999999877      999999999999999999999999988


Q ss_pred             ccccchhhhHHHHHHHHHHHHHHHHcc
Q 008096          196 DNVGWNWGLGIPTVAMFLSIIAFVFGY  222 (577)
Q Consensus       196 ~~~gw~~~f~~~~~~~~~~~~~~~~~~  222 (577)
                      +..+|++.|++.++..++..+......
T Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (399)
T TIGR00893       143 IHFSWQWAFIIEGVLGIIWGVLWLKFI  169 (399)
T ss_pred             HhCCchHHHHHHHHHHHHHHHHhhhee
Confidence            889999999888776655555444433

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.92  E-value=6.7e-23  Score=219.97  Aligned_cols=168  Identities=17%  Similarity=0.181  Sum_probs=128.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcC---CChHHHHHHHHHHhHhh---hhchhhhhhhhhhccchhHHHHHHHHHHHHHH
Q 008096           25 NEVCEKLAVVGFHANMISYLTTQLH---MPLTKAANTLTNFGGTG---SLTPLIGAFVADTYAGRFWTITVASIIYQIGM   98 (577)
Q Consensus        25 ~~~~~~~~~~~~~~~l~~~l~~~lg---~s~~~~~~i~~~~~~~~---~~~~~~~G~laDr~~Grk~~~~~~~~~~~i~~   98 (577)
                      ..+++.+... ..++...++.++++   .+..+.+.+.+.+..+.   .++++++|+++||+ |||+++..+.+++.+++
T Consensus        30 ~~~~~~~d~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~-Grr~~l~~~~~~~~~~~  107 (432)
T PRK10406         30 GNLVEWFDFY-VYSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKH-GRKKSMLISVCMMCFGS  107 (432)
T ss_pred             HHHHHHHHHH-HHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHHHH
Confidence            3555555544 46677778888874   56665555444444444   49999999999999 99999999999999999


Q ss_pred             HHHHHhhhcCCCCCCCCCCCCcccccccchhHHHHHHHHHHHhccCCcccchhhhhhccCCCCCchhhhhhhhhhhHHHH
Q 008096           99 FSLTLSAILPQLRPPPCQGDQVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYF  178 (577)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~  178 (577)
                      ++++++.++..              ....+...+++.|+++|++.|+..|...++++|++|+++      |+++.++.+.
T Consensus       108 ~~~~~~~~~~~--------------~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~------rg~~~~~~~~  167 (432)
T PRK10406        108 LVIACLPGYET--------------IGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGR------KGFYASFQYV  167 (432)
T ss_pred             HHHhhcCCchh--------------HHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCc------ccHHHHHHHH
Confidence            99998652211              001134568899999999999999999999999999888      9999999888


Q ss_pred             HHHHHHHHHHHHHHhhc--------ccccchhhhHHHHHHHHHH
Q 008096          179 VMGAAVLVAVTVLVYIQ--------DNVGWNWGLGIPTVAMFLS  214 (577)
Q Consensus       179 ~~~ig~~lg~~i~~~l~--------~~~gw~~~f~~~~~~~~~~  214 (577)
                      +.+.|.++++++...+.        +.+|||++|++.++..++.
T Consensus       168 ~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~  211 (432)
T PRK10406        168 TLIGGQLLALLVVVVLQQTLEDAELREWGWRIPFALGAVLAVVA  211 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHH
Confidence            88888888887655543        2579999999877765543

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.92  E-value=3.9e-23  Score=223.92  Aligned_cols=149  Identities=9%  Similarity=0.105  Sum_probs=131.2

Q ss_pred             hcCCChHHHHHHHHHHhHhhhhchhhhhhhhhhccchhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCccccccc
Q 008096           47 QLHMPLTKAANTLTNFGGTGSLTPLIGAFVADTYAGRFWTITVASIIYQIGMFSLTLSAILPQLRPPPCQGDQVCKEADT  126 (577)
Q Consensus        47 ~lg~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  126 (577)
                      ++++|..+.|++.+.+.+++.++++++|+++||+ |||+++..+.++..++.+++.++.                    .
T Consensus        70 ~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-g~r~~l~~~~~~~~~~~~~~~~~~--------------------~  128 (465)
T TIGR00894        70 NFKWSGALQGLILSSHFYGQIIIQIPVGYLAGKY-VFKWSIGIGMFLSSVISIVIPWAA--------------------G  128 (465)
T ss_pred             CCCCCHHHhhHHHHHHHHHHHHHHcchHHHHHHh-CcchhhHHHHHHHHHHHHHHHHHH--------------------H
Confidence            6899999999999999999999999999999998 999999999999888887776543                    0


Q ss_pred             chhHHHHHHHHHHHhccCCcccchhhhhhccCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhcccc-cchhhhH
Q 008096          127 GQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAVLVAVTVLVYIQDNV-GWNWGLG  205 (577)
Q Consensus       127 ~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~lg~~i~~~l~~~~-gw~~~f~  205 (577)
                      .+...+++.|+++|++.+...|....+++|++|+++      |+++.++.+.+.++|..+++.+++++.+.+ ||++.|+
T Consensus       129 ~~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~  202 (465)
T TIGR00894       129 GGIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKE------RSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFY  202 (465)
T ss_pred             cCchHHHHHHHHHHHhcccchhhHHHHHHhcCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehh
Confidence            145678999999999999999999999999999888      999999999999999999999999998884 9999999


Q ss_pred             HHHHHHHHHHHHHHHcc
Q 008096          206 IPTVAMFLSIIAFVFGY  222 (577)
Q Consensus       206 ~~~~~~~~~~~~~~~~~  222 (577)
                      +.++..++..++++...
T Consensus       203 i~~~~~~~~~~~~~~~~  219 (465)
T TIGR00894       203 VFGIVGCAWSLLWFVFP  219 (465)
T ss_pred             hhhHHHHHHHHHHHHHh
Confidence            98887665555544443

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.92  E-value=7.7e-24  Score=219.45  Aligned_cols=170  Identities=16%  Similarity=0.314  Sum_probs=148.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhHhhhhchhhhhhhhhhccchhHHHHHHHHHHHHHHHHHH
Q 008096           23 FANEVCEKLAVVGFHANMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADTYAGRFWTITVASIIYQIGMFSLT  102 (577)
Q Consensus        23 ~~~~~~~~~~~~~~~~~l~~~l~~~lg~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~i~~~~~~  102 (577)
                      +...++..+......+.++.++.+++|.|.++.+++.+.+.++..+++++.|+++||+ |||+++.++.++..++..++.
T Consensus         2 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~l~~~~~~~~~~~~~~~   80 (352)
T PF07690_consen    2 FLAFFLSGFGFSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRF-GRRRVLIIGLLLFALGSLLLA   80 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCeeeEeehhhhhhhHHHHhh
Confidence            4456667777777777777788899999999999999999999999999999999998 999999999999999966666


Q ss_pred             HhhhcCCCCCCCCCCCCcccccccchhHHHHHHHHHHHhccCCcccchhhhhhccCCCCCchhhhhhhhhhhHHHHHHHH
Q 008096          103 LSAILPQLRPPPCQGDQVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGA  182 (577)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~i  182 (577)
                      ++.                      +.+.+++.|++.|++.+...+...+++.|++|+++      |++++++.+...++
T Consensus        81 ~~~----------------------~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~------~~~~~~~~~~~~~~  132 (352)
T PF07690_consen   81 FAS----------------------NFWLLLIARFLLGIGSGFFSPASNALIADWFPPEE------RGRAFGILSAGFSL  132 (352)
T ss_dssp             HHC----------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCC------HHHHHHHHHHHHHH
T ss_pred             hhh----------------------hHHHHhhhccccccccccccccccccccccchhhh------hhhccccccchhhh
Confidence            543                      56689999999999999999999999999999988      99999999999999


Q ss_pred             HHHHHHHHHHhhcccccchhhhHHHHHHHHHHHHHHHHc
Q 008096          183 AVLVAVTVLVYIQDNVGWNWGLGIPTVAMFLSIIAFVFG  221 (577)
Q Consensus       183 g~~lg~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~  221 (577)
                      |..++|.+++++.+.+||++.|++.++..++..++....
T Consensus       133 g~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~il~~~~  171 (352)
T PF07690_consen  133 GSILGPLLGGFLISYFGWRWAFLISAILSLIAAILFILF  171 (352)
T ss_dssp             HHHHHHHHHHHCCCHCHHCCHHHHHHHHHHHHHHHHHCC
T ss_pred             hhhcccchhhhhhhccccccccccccchhhhhhhhHhhh
Confidence            999999999999988999999999998877776643333

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.92  E-value=3.7e-23  Score=221.22  Aligned_cols=168  Identities=13%  Similarity=0.153  Sum_probs=146.6

Q ss_pred             CCCcceehHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhHhhhhchhhhhhhhhhccchhHHHHHHHH
Q 008096           13 KGGIITMPFIFANEVCEKLAVVGFHANMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADTYAGRFWTITVASI   92 (577)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~lg~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~   92 (577)
                      +.+|+......+..+.+.+..+.. .++..++++++|.|..+.+++.+.+.++..+++++.|+++||+ |||+++.++.+
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~-g~r~~l~~~~~   91 (426)
T PRK12307         14 RPQKNALFSAWLGYVFDGFDFMLI-FYIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKF-GRKPLMMWSIV   91 (426)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHH-HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CChHHHHHHHH
Confidence            455666666666666666666555 4444567789999999999999999999999999999999998 99999999999


Q ss_pred             HHHHHHHHHHHhhhcCCCCCCCCCCCCcccccccchhHHHHHHHHHHHhccCCcccchhhhhhccCCCCCchhhhhhhhh
Q 008096           93 IYQIGMFSLTLSAILPQLRPPPCQGDQVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKY  172 (577)
Q Consensus        93 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~  172 (577)
                      +..++.++++++.                      +.+.++++|+++|++.+...+...+++.|++|+++      |+++
T Consensus        92 ~~~~~~~~~~~~~----------------------~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~------r~~~  143 (426)
T PRK12307         92 AYSVGTGLSGLAS----------------------GVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHL------KSKA  143 (426)
T ss_pred             HHHHHHHHHHHHh----------------------HHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhH------hhHh
Confidence            9999999988876                      67889999999999999999999999999999887      9999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHhhcccccchhhhHHHHHH
Q 008096          173 FNWYYFVMGAAVLVAVTVLVYIQDNVGWNWGLGIPTVA  210 (577)
Q Consensus       173 ~~~~~~~~~ig~~lg~~i~~~l~~~~gw~~~f~~~~~~  210 (577)
                      .++++.+..+|.++++.+.+.+.+.+|||+.|++....
T Consensus       144 ~~~~~~~~~lg~~~~~~l~~~l~~~~~w~~~f~i~~~~  181 (426)
T PRK12307        144 SAFLVSGFGIGNIIAAYFMPSFAEAYGWRAAFFVGLLP  181 (426)
T ss_pred             hhHHHHHHhHHHHHHHHHHHHHcccCCHHHHHHHHHHH
Confidence            99999999999999999999998889999999875543

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.92  E-value=2.2e-23  Score=224.80  Aligned_cols=145  Identities=18%  Similarity=0.302  Sum_probs=125.2

Q ss_pred             CChHHHHHHHHHHhHhhhhchhhhhhhhhhccchhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCcccccccchh
Q 008096           50 MPLTKAANTLTNFGGTGSLTPLIGAFVADTYAGRFWTITVASIIYQIGMFSLTLSAILPQLRPPPCQGDQVCKEADTGQL  129 (577)
Q Consensus        50 ~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (577)
                      .+..+.+++.+.+.++..+++++.|+++||+ |||+++.++.++..++.+++.++.+                   ..+.
T Consensus        68 ~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~-grr~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~  127 (481)
T TIGR00879        68 YSSSLWGLVVSIFLVGGFIGALFAGWLSDRF-GRKKSLLIIALLFVIGAILMGLAAF-------------------ALSV  127 (481)
T ss_pred             CChhHHHHHHHHHHHHHHHHHHHhhHhhhhh-hhHHHHHHHHHHHHHHHHHHHHhcc-------------------ccch
Confidence            3389999999999999999999999999998 9999999999999999888876541                   1245


Q ss_pred             HHHHHHHHHHHhccCCcccchhhhhhccCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHHHH---HhhcccccchhhhHH
Q 008096          130 AILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAVLVAVTVL---VYIQDNVGWNWGLGI  206 (577)
Q Consensus       130 ~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~lg~~i~---~~l~~~~gw~~~f~~  206 (577)
                      +.++++|+++|+|.+...+...++++|++|+++      |+++.++++.+.++|..+++.++   +...+..+||+.|++
T Consensus       128 ~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~w~~~f~~  201 (481)
T TIGR00879       128 EMLIVGRVLLGIGVGIASALVPMYLSEIAPKAL------RGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRIPLGL  201 (481)
T ss_pred             HHHHHHHHHHHhhhhHHHhHHHHHHHccCChhh------hhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCccHHHHHHH
Confidence            678999999999999999999999999999888      99999999999999999999998   676677899999998


Q ss_pred             HHHHHHHHHHHHHH
Q 008096          207 PTVAMFLSIIAFVF  220 (577)
Q Consensus       207 ~~~~~~~~~~~~~~  220 (577)
                      .++..++..+..++
T Consensus       202 ~~~~~~~~~~~~~~  215 (481)
T TIGR00879       202 QLIPAGLLFLGLFF  215 (481)
T ss_pred             HHHHHHHHHHHHhc
Confidence            66655554444333

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.92  E-value=9.4e-23  Score=220.15  Aligned_cols=157  Identities=14%  Similarity=0.090  Sum_probs=126.8

Q ss_pred             HHHHHHHHHhcCCChHHHHHHHHHHhHhhhhchhhhhhhhhhccchhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCC
Q 008096           38 ANMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADTYAGRFWTITVASIIYQIGMFSLTLSAILPQLRPPPCQG  117 (577)
Q Consensus        38 ~~l~~~l~~~lg~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  117 (577)
                      .+..+|+.++ |+|..+.+++.+.+.++..+++++.|+++||+ |||+++.++.++..++.+.++++...          
T Consensus        49 ~~~~p~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~-g~k~~l~~~~~~~~i~~~~~~~~~~~----------  116 (452)
T PRK11273         49 ALAMPYLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILAAAVMLFMGFVPWA----------  116 (452)
T ss_pred             HHhhHHHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhcc-CCchhHHHHHHHHHHHHHHHHhhhcc----------
Confidence            3444577777 99999999999999999999999999999998 99999999999999988888875311          


Q ss_pred             CCcccccccchhHHHHHHHHHHHhccCCcccchhhhhhccCCCCCchhhhhhhhhhhHHHHHHHHHHH-HHHHHHHhhcc
Q 008096          118 DQVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAVL-VAVTVLVYIQD  196 (577)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~-lg~~i~~~l~~  196 (577)
                              +.+.+.+++.|++.|++.+...|...+.+.|++|+++      |++++++++.+.++|.. .+|+++..+..
T Consensus       117 --------~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~l~~~~~~~  182 (452)
T PRK11273        117 --------TSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKE------RGGIVSVWNCAHNVGGGLPPLLFLLGMAW  182 (452)
T ss_pred             --------cccHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHH------HHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence                    1256778899999999999999988899999999877      99999999999999864 45554433333


Q ss_pred             cccchhhhHHHHHHHHHHHHHHHH
Q 008096          197 NVGWNWGLGIPTVAMFLSIIAFVF  220 (577)
Q Consensus       197 ~~gw~~~f~~~~~~~~~~~~~~~~  220 (577)
                      ..|||+.|++.++..++..++..+
T Consensus       183 ~~gw~~~f~i~~~~~~~~~~l~~~  206 (452)
T PRK11273        183 FNDWHAALYMPAFAAILVALFAFA  206 (452)
T ss_pred             hccHHHHHHHHHHHHHHHHHHHHH
Confidence            458999999887765554444333

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.92  E-value=1.3e-22  Score=215.87  Aligned_cols=176  Identities=15%  Similarity=0.113  Sum_probs=143.1

Q ss_pred             CcceehHHHHHHHHHH---HHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhHhhhhchhhhhhhhhhccchhHHHHHHH
Q 008096           15 GIITMPFIFANEVCEK---LAVVGFHANMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADTYAGRFWTITVAS   91 (577)
Q Consensus        15 ~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~l~~~lg~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~   91 (577)
                      |.+..+..+...++..   ++...+.+.++. +.+++|.|..+.++..+.+.++..+++++.|+++||+ |||+.+.++.
T Consensus         8 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~-g~r~~l~~~~   85 (406)
T PRK15402          8 GRQALLFPLCLVLFEFATYIANDMIQPGMLA-VVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRI-GRRPVMLAGV   85 (406)
T ss_pred             hHHHHHHHHHHHHHHHHHHhhhhhHhcchHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CChHHHHHHH
Confidence            3333444444444433   344455555554 4578999999999999999999999999999999998 9999999999


Q ss_pred             HHHHHHHHHHHHhhhcCCCCCCCCCCCCcccccccchhHHHHHHHHHHHhccCCcccchhhhhhccCCCCCchhhhhhhh
Q 008096           92 IIYQIGMFSLTLSAILPQLRPPPCQGDQVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWK  171 (577)
Q Consensus        92 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~  171 (577)
                      ++..++.+++.++.                      +.+.+++.|+++|++.+...+...+++.|.+|+++      |.+
T Consensus        86 ~~~~~~~~~~~~~~----------------------~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~------~~~  137 (406)
T PRK15402         86 AFFILTCLAILLAQ----------------------SIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEAD------AIK  137 (406)
T ss_pred             HHHHHHHHHHHHHc----------------------cHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhH------HHH
Confidence            99999888888765                      67778999999999999988999999999999877      788


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHHHHHHHHH
Q 008096          172 YFNWYYFVMGAAVLVAVTVLVYIQDNVGWNWGLGIPTVAMFLSIIAFVF  220 (577)
Q Consensus       172 ~~~~~~~~~~ig~~lg~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~  220 (577)
                      ..++.+....+|..++|.+++++.+..+|++.|++.++..++..+....
T Consensus       138 ~~~~~~~~~~~~~~~g~~i~~~l~~~~~w~~~~~~~~~~~~~~~~~~~~  186 (406)
T PRK15402        138 ITALMANVALLAPLLGPLVGAALIHVLPWRGMFVLFAALAALSFFGLWR  186 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHH
Confidence            8888888888999999999999988889999998877776665554443

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.92  E-value=8.4e-23  Score=221.79  Aligned_cols=177  Identities=8%  Similarity=0.025  Sum_probs=138.5

Q ss_pred             CCCcceehHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhHhhhhchhhhhhhhhhccchhHHHHHHHH
Q 008096           13 KGGIITMPFIFANEVCEKLAVVGFHANMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADTYAGRFWTITVASI   92 (577)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~lg~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~   92 (577)
                      +++++.+.......++..+..+...+.++ ++.+++|+|.++.+++.+.+.+++.+++++.|+++||+ |||+++.++.+
T Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-G~r~~~~~~~~  109 (476)
T PLN00028         32 RPHMRAFHLSWISFFTCFVSTFAAAPLLP-IIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLY-GPRYGSAFLLM  109 (476)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CChHHHHHHHH
Confidence            45555666555566666666665554444 66789999999999999999999999999999999998 99999999999


Q ss_pred             HHHHHHHHHHHhhhcCCCCCCCCCCCCcccccccchhHHHHHHHHHHHhccCCcccchhhhhhccCCCCCchhhhhhhhh
Q 008096           93 IYQIGMFSLTLSAILPQLRPPPCQGDQVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKY  172 (577)
Q Consensus        93 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~  172 (577)
                      +..++.++++++.                      +...+++.|+++|++.+... ....+++|++|+++      |+++
T Consensus       110 ~~~~~~~~~~~~~----------------------s~~~l~~~r~l~G~~~~~~~-~~~~~i~~~~~~~~------rg~a  160 (476)
T PLN00028        110 LTAPAVFCMSLVS----------------------SATGFIAVRFFIGFSLATFV-SCQYWMSTMFNGKI------VGTA  160 (476)
T ss_pred             HHHHHHHHHHHhc----------------------CHHHHHHHHHHHHHHHHhhH-HHHHHHHHhcChhh------eeHH
Confidence            9999988888766                      67778899999999988654 45667899999887      9999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHhhcc---------cccchhhhHHHHHHHHHHHHHHHH
Q 008096          173 FNWYYFVMGAAVLVAVTVLVYIQD---------NVGWNWGLGIPTVAMFLSIIAFVF  220 (577)
Q Consensus       173 ~~~~~~~~~ig~~lg~~i~~~l~~---------~~gw~~~f~~~~~~~~~~~~~~~~  220 (577)
                      +++.+...++|..+++.+.+.+..         ..|||+.|++.+++.++..+...+
T Consensus       161 ~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~i~g~l~l~~~l~~~~  217 (476)
T PLN00028        161 NGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFFVPGLLHIIMGILVLT  217 (476)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHH
Confidence            999888778888777666554421         258999999888776555444443

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.91  E-value=8.7e-23  Score=221.98  Aligned_cols=394  Identities=13%  Similarity=0.145  Sum_probs=239.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhHhhhhchhhhhhhhhhccchhHHHHHHHHHHHHHHHHHH
Q 008096           23 FANEVCEKLAVVGFHANMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADTYAGRFWTITVASIIYQIGMFSLT  102 (577)
Q Consensus        23 ~~~~~~~~~~~~~~~~~l~~~l~~~lg~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~i~~~~~~  102 (577)
                      ....++..+........ .+++.+++|.|.++.+++.+.+.++..++.++.|+++||+ |||+.+.++.++..++.++++
T Consensus         8 ~~~~~~~~~~~~~~~~~-~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~~   85 (485)
T TIGR00711         8 MLGTFMAVLDSTIVNVA-IPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRF-GTRRLFLISTFAFTLGSLLCG   85 (485)
T ss_pred             HHHHHHHHHHHHHHHHH-HHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHh-CcHHHHHHHHHHHHHHHHHHh
Confidence            33444454544444444 4556678999999999999999999999999999999998 999999999999999999988


Q ss_pred             HhhhcCCCCCCCCCCCCcccccccchhHHHHHHHHHHHhccCCcccchhhhhhccCCCCCchhhhhhhhhhhHHHHHHHH
Q 008096          103 LSAILPQLRPPPCQGDQVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGA  182 (577)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~i  182 (577)
                      ++.                      +...+++.|+++|++.+...+...+++.|.+|+++      |+++.++++.+..+
T Consensus        86 ~~~----------------------~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~~~~~~~  137 (485)
T TIGR00711        86 VAP----------------------NLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEK------RGRAMAIWGLTVLV  137 (485)
T ss_pred             CcC----------------------CHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHH------HHHHHHHHHHHHHH
Confidence            765                      67889999999999999999999999999999777      99999999999999


Q ss_pred             HHHHHHHHHHhhcccccchhhhHHHHHHHHHHHHHHHHccccccccCCCCChhhHH-HH-----HHHHHHhhccccCCCC
Q 008096          183 AVLVAVTVLVYIQDNVGWNWGLGIPTVAMFLSIIAFVFGYPLYRNLNPAGSPFVRL-MQ-----VCVAAFRKRNLDMVSD  256 (577)
Q Consensus       183 g~~lg~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-----~~~~~~~~~~~~~~~~  256 (577)
                      |..+||.+++++.+++|||+.|++.++..++..++..+..++.++++..+.+.... ..     .+.....+.+..    
T Consensus       138 g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~l~~~~~~~~~~~~~~~~~~----  213 (485)
T TIGR00711       138 APALGPTLGGWIIENYHWRWIFLINVPIGIIVVVVAFFILPRDKPAASENFDFLGLLLLSVGLGSLLYGLSEGPER----  213 (485)
T ss_pred             HhhhhhccHhHhccCcCceehhhhhhHHHHHHHHHHHHHcCCccccccCCCcHHHHHHHHHHHHHHHHHHhhCCCC----
Confidence            99999999999999999999999887766655555444444322111111111100 00     000011111000    


Q ss_pred             CcccccccchhhhhhcCCcccccccchhh-hhhhhccccccCCCCCcccccchhhhhhhhhhhhhhhHHHHHHHHHHHhh
Q 008096          257 PNVLYQNEELDASICLDGKLLHTKHMKFL-DKAAIVTEEDDIKSPNLWRLNTVHRVEELKSVIRMGPIWASGILLITAYA  335 (577)
Q Consensus       257 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~l~~~~~~~~~~~~  335 (577)
                       .+.........           ...... -......+.++.++..+++.     .++++........+.....++....
T Consensus       214 -~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~  276 (485)
T TIGR00711       214 -GWFDSNEILIL-----------SITGLVAIIAFVVWELTDDNPLVDLRL-----FKYRNFTIGCVYMSLLGLGLYGSFY  276 (485)
T ss_pred             -CCCCchHHHHH-----------HHHHHHHHHHHHHHHHcCCCCccCHHH-----HcCCChHHHHHHHHHHHHHHHHHHH
Confidence             00000000000           000000 00000000001111111111     1111111111111111111111111


Q ss_pred             ccceeEEeeccccccccccccc-cccchhhhhhHHHHHHHHHhhhhhhhhccccccCCCCCCCchhHHHHHHHHHHHHHH
Q 008096          336 QQGTFSLQQAKSMDRHLTKSFQ-IPAGSMSVFTMVSMLSTIALYDRIIIPVARKFTGLDRGITFLHRMGIGFVISVLATL  414 (577)
Q Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ig~~~~~l~~~  414 (577)
                      ..+.+       .....  +++ ...+.......+..+++.++.++    +.||.++|+       .+.+|..+.++++.
T Consensus       277 ~~p~~-------~~~~~--g~s~~~~g~~~~~~~~~~~~~~~~~g~----l~~r~~~~~-------~~~~g~~~~~~~~~  336 (485)
T TIGR00711       277 LLPLY-------LQQVL--GYTALQAGLHILPVGLAPMLSSPIAGR----MGDKIDPRK-------LVTIGLILYAVGFY  336 (485)
T ss_pred             HHHHH-------HHHhc--CCCHHHHHHHHHHHHHHHHHHHHHHHH----HHhhcCcHH-------HHHHHHHHHHHHHH
Confidence            11111       11111  111 11334444455555666666554    555654332       26677777777666


Q ss_pred             HHHHHHHHHHHHHHhcCCCCCCCccccchhhHHHHHHHHHHHHHHHHhhhhhhhhhcccCcccHHHHHHHHHHHHhHHHH
Q 008096          415 VAGFVEMKRKQAALAHGLVDKPHIIIPISVLWLVPQYSLHGIAEAFMSVGHLEFLYDQAPESMRSTATALFWTANSIGNY  494 (577)
Q Consensus       415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~gi~~~~~~~~~~~~v~~~~P~~~rg~~~gi~~~~~~lg~~  494 (577)
                      +.....                  ....+.+......++.+++.+...+.......+..|++.+|+++|+.++.+.+|+.
T Consensus       337 ~~~~~~------------------~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~  398 (485)
T TIGR00711       337 WRAFTF------------------TPDTPFLAIALPQFIRGFGMGCFFMPLTTIALSGLPPHKIARGSSLSNFTRQLGGS  398 (485)
T ss_pred             HHhccC------------------CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhHHHHHHHHHHHHHHH
Confidence            554211                  01234444555677889998888888888888899999999999999999999999


Q ss_pred             HHHHHHHHHhh
Q 008096          495 VSTLLVTLVHK  505 (577)
Q Consensus       495 l~~~i~~~v~~  505 (577)
                      +++.+.+.+.+
T Consensus       399 ig~~i~g~~~~  409 (485)
T TIGR00711       399 IGTALITTILT  409 (485)
T ss_pred             HHHHHHHHHHH
Confidence            99999988765

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.91  E-value=3.9e-23  Score=223.21  Aligned_cols=151  Identities=11%  Similarity=0.048  Sum_probs=129.0

Q ss_pred             HHHHHhcCCChHHHHHHHHHHhHhhhhchhhhhhhhhhccchhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCcc
Q 008096           42 SYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADTYAGRFWTITVASIIYQIGMFSLTLSAILPQLRPPPCQGDQVC  121 (577)
Q Consensus        42 ~~l~~~lg~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~  121 (577)
                      ..+.+++|.|.++.+++.+.+.++..++.++.|+++||+ |||++++.+.++..++.+.+++++                
T Consensus        43 ~~i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~-g~r~~l~~~~~~~~~~~~~~~~~~----------------  105 (455)
T TIGR00892        43 KELQQIFQATYSETAWISSIMLAVLYAGGPISSILVNRF-GCRPVVIAGGLLASLGMILASFSS----------------  105 (455)
T ss_pred             HHHHHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHc-CchHHHHhhHHHHHHHHHHHHHhh----------------
Confidence            445679999999999999999999999999999999998 999999999999999988888866                


Q ss_pred             cccccchhHHHHH-HHHHHHhccCCcccchhhhhhccCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhcccccc
Q 008096          122 KEADTGQLAILYA-SLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAVLVAVTVLVYIQDNVGW  200 (577)
Q Consensus       122 ~~~~~~~~~~~~~-~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~lg~~i~~~l~~~~gw  200 (577)
                            +.+.+++ .|++.|++.+...+...+++.++++ ++      |+++.++.+.+..+|..++|.+++++.+.+||
T Consensus       106 ------~~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~------r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~gw  172 (455)
T TIGR00892       106 ------NVIELYLTAGFITGLGLAFNFQPSLTMLGKYFY-RR------RPLANGLAMAGSPVFLSTLAPLNQYLFESFGW  172 (455)
T ss_pred             ------hHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHH-hh------HHHHHHHHHhcccHHHHHHHHHHHHHHHHhCh
Confidence                  5555654 5688999999877777888889885 45      89999999999999999999999999998999


Q ss_pred             hhhhHHHHHHHHHHHHHHHHcc
Q 008096          201 NWGLGIPTVAMFLSIIAFVFGY  222 (577)
Q Consensus       201 ~~~f~~~~~~~~~~~~~~~~~~  222 (577)
                      |++|++.+++.++..+..++..
T Consensus       173 r~~f~~~~~~~~~~~v~~~~~~  194 (455)
T TIGR00892       173 RGSFLILGGLLLHCCVCGALMR  194 (455)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhC
Confidence            9999998887666555444443

>PRK03699 putative transporter; Provisional

Probab=99.91  E-value=3.6e-22  Score=211.67  Aligned_cols=174  Identities=11%  Similarity=0.135  Sum_probs=145.4

Q ss_pred             CCcceehHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhHhhhhchhhhhhhhhhccchhHHHHHHHHH
Q 008096           14 GGIITMPFIFANEVCEKLAVVGFHANMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADTYAGRFWTITVASII   93 (577)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~lg~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~   93 (577)
                      +|||..+...+..++.....+.+-..+|. +.+++|+|.++.+++.+.+.++..+++++.|+++||+ |||+++..+.++
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~-g~r~~~~~~~~~   81 (394)
T PRK03699          4 NRIKLTWISFLSYALTGALVIVTGMVMGP-IAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEII-PLKRQLIFGFAL   81 (394)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhhhHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHH
Confidence            45666666666666666665555555555 5678999999999999999999999999999999998 999999999999


Q ss_pred             HHHHHHHHHHhhhcCCCCCCCCCCCCcccccccchhHHHHHHHHHHHhccCCcccchhhhhhccCCCCCchhhhhhhhhh
Q 008096           94 YQIGMFSLTLSAILPQLRPPPCQGDQVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYF  173 (577)
Q Consensus        94 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  173 (577)
                      ..++.++++++.                      +.+.+++.|+++|++.+...+...+++.|.+|+++      |+++.
T Consensus        82 ~~i~~~l~~~~~----------------------~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~------r~~~~  133 (394)
T PRK03699         82 MILAVAGLMFSH----------------------SLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQ------RGSRL  133 (394)
T ss_pred             HHHHHHHHHHcc----------------------hHHHHHHHHHHHHHhhHhhccchhHHhhhhcccch------HHHHH
Confidence            999988888765                      67788999999999999999999999999998777      88889


Q ss_pred             hHHHHHHHHHHHHHHHHHHhhc-ccccchhhhHHHHHHHHHHHHH
Q 008096          174 NWYYFVMGAAVLVAVTVLVYIQ-DNVGWNWGLGIPTVAMFLSIIA  217 (577)
Q Consensus       174 ~~~~~~~~ig~~lg~~i~~~l~-~~~gw~~~f~~~~~~~~~~~~~  217 (577)
                      +..+....+|..++|.+.+++. +..|||+.|.+.++..++..+.
T Consensus       134 ~~~~~~~~~g~~~~~~~~~~l~~~~~gw~~~f~~~~~~~~~~~~~  178 (394)
T PRK03699        134 LFTDSFFSMAGMIFPIIAAYLLARSIEWYWVYACIGLVYVAIFIL  178 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHH
Confidence            8888888899999999888765 4579999998877665544433

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.91  E-value=3.5e-23  Score=221.08  Aligned_cols=376  Identities=15%  Similarity=0.198  Sum_probs=252.1

Q ss_pred             hcCCChHHHHHHHHHHhHhhhhchhhhhhhhhhccchhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCccccccc
Q 008096           47 QLHMPLTKAANTLTNFGGTGSLTPLIGAFVADTYAGRFWTITVASIIYQIGMFSLTLSAILPQLRPPPCQGDQVCKEADT  126 (577)
Q Consensus        47 ~lg~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  126 (577)
                      ++++|.+|.+++.+.+..|+.++++++|+++||| |-|+++.++.++.++++++.+++...                   
T Consensus        67 ~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~-G~r~v~~~~~~~sa~~t~l~P~aa~~-------------------  126 (466)
T KOG2532|consen   67 EYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKF-GARRVFFISGLISALLTLLTPLAASI-------------------  126 (466)
T ss_pred             eecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHc-CchHHHHHHHHHHHHHHHHHHHHHHh-------------------
Confidence            5889999999999999999999999999999999 99999999999999999999998732                   


Q ss_pred             chhHHHHHHHHHHHhccCCcccchhhhhhccCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhccc-ccchhhhH
Q 008096          127 GQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAVLVAVTVLVYIQDN-VGWNWGLG  205 (577)
Q Consensus       127 ~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~lg~~i~~~l~~~-~gw~~~f~  205 (577)
                       +.+.+++.|+++|++.|...|+...+.+++.|++|      |++..++.+.+..+|.+++..+.|++.+. +||++.|+
T Consensus       127 -~~~~~~~~R~lqGl~~g~~~pa~~~i~~~W~P~~E------rs~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY  199 (466)
T KOG2532|consen  127 -GFYLLLVLRFLQGLGQGVLFPAIGSILAKWAPPNE------RSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFY  199 (466)
T ss_pred             -cchhhHHHHHHhHHHHhHHHhhhhceeeeECCHHH------HHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHH
Confidence             33467999999999999999999999999999999      99999999999999999999999999998 99999999


Q ss_pred             HHHHHHHHHHHHHHHccccccccCCCCChhhHHHHHHHHHHhhccccCCCCCcccccccchhhhhhcCCcccccccchhh
Q 008096          206 IPTVAMFLSIIAFVFGYPLYRNLNPAGSPFVRLMQVCVAAFRKRNLDMVSDPNVLYQNEELDASICLDGKLLHTKHMKFL  285 (577)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l  285 (577)
                      +.++..++..++++......+.+++.-++...                                             +++
T Consensus       200 ~~g~~g~i~~~~w~~~~~d~P~~h~~is~~El---------------------------------------------~~I  234 (466)
T KOG2532|consen  200 VFGIVGLIWFILWFLFYSDSPSKHPNISEKEL---------------------------------------------KYI  234 (466)
T ss_pred             HHHHHHHHHHHHHHHHhcCCcccCCCCCHHHH---------------------------------------------HHH
Confidence            99998888777776665433332222211110                                             000


Q ss_pred             hhhhhccccccCCCCCcccccchhhhhhhhhhhhhhhHHHHHHHHHHHhhccceeEEeecccccccccccccc-ccchhh
Q 008096          286 DKAAIVTEEDDIKSPNLWRLNTVHRVEELKSVIRMGPIWASGILLITAYAQQGTFSLQQAKSMDRHLTKSFQI-PAGSMS  364 (577)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  364 (577)
                      +.....++. ..+...||+           .+++..+++..-+..++-......+..+.+.+++..+  ++++ .++.+.
T Consensus       235 ~~~k~~~~~-~~~~~vP~~-----------~i~ts~~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL--~f~v~~~G~~s  300 (466)
T KOG2532|consen  235 EKGKSEAHV-KKKPPVPYK-----------AILTSPPVWAIWISAFGGNWGFYLLLTYLPTYLKEVL--GFDVRETGFLS  300 (466)
T ss_pred             Hhccccccc-CCCCCCCHH-----------HHHcCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHh--CCChhhhhHHH
Confidence            000000000 111355664           2222222222211111111111112233344455444  5555 477888


Q ss_pred             hhhHHHHHHHHHhhhhhhhhccccccCCCCCCCchhHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccccc
Q 008096          365 VFTMVSMLSTIALYDRIIIPVARKFTGLDRGITFLHRM--GIGFVISVLATLVAGFVEMKRKQAALAHGLVDKPHIIIPI  442 (577)
Q Consensus       365 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~--~ig~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  442 (577)
                      +++.+...+...+.+.+.|++..| .   .+.+..+|+  .++....++.++++++..                    ..
T Consensus       301 alP~l~~~~~k~~~g~lsD~l~~~-~---ls~t~~rkifn~i~~~~~ai~l~~l~~~~--------------------~~  356 (466)
T KOG2532|consen  301 ALPFLAMAIVKFVAGQLSDRLTFR-I---LSETTVRKIFNTIAFGGPAVFLLVLAFTS--------------------DE  356 (466)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhc-c---CchHhHHHHHHhHHHHHHHHHHHeeeecC--------------------CC
Confidence            888888888888877766666554 1   111333333  555666666666655543                    11


Q ss_pred             hhhHHHHHHHHHHHHHH-HHhhhhhhhhhcccCcccHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCC
Q 008096          443 SVLWLVPQYSLHGIAEA-FMSVGHLEFLYDQAPESMRSTATALFWTANSIGNYVSTLLVTLVHKFSAGPNGSNWLPDNNL  521 (577)
Q Consensus       443 ~~~~l~~~~~l~gi~~~-~~~~~~~~~v~~~~P~~~rg~~~gi~~~~~~lg~~l~~~i~~~v~~~~~~~~~~~~~~~~~~  521 (577)
                      +. +..+..+..+.+.. +..+..+.-..+.+| +.-+..+|+.+....+.++++|++++.+.. .            + 
T Consensus       357 ~~-~~a~~~l~~~~~~~g~~~~Gf~~~~~~~ap-q~a~~l~g~~~~~~~~~~~~~P~~vg~~~~-~------------~-  420 (466)
T KOG2532|consen  357 HR-LLAVILLTIAIGLSGFNISGFYKNHQDIAP-QHAGFVMGIINFVGALAGFIAPLLVGIIVT-D------------N-  420 (466)
T ss_pred             cc-hHHHHHHHHHHHHcccchhhhHhhhhhccc-hHHHHHHHHHHHHHHHHHHHHHHheeeEeC-C------------C-
Confidence            11 11111222222222 233333333333356 557999999999999999999999887642 1            1 


Q ss_pred             CcchhhHHHHHHHHHHHHHHHHHhhhh
Q 008096          522 NKGKLEYFYWLITLLQVVNVIYYFFCA  548 (577)
Q Consensus       522 ~~~~~~~~~~~~~~~~~~~~i~~~~~~  548 (577)
                      +...+..+|++.+++.+++.+++.++.
T Consensus       421 t~~eW~~VF~i~a~i~~~~~i~f~~f~  447 (466)
T KOG2532|consen  421 TREEWRIVFLIAAGILIVGNIIFLFFG  447 (466)
T ss_pred             CHHHHHHHHHHHHHHHHHhchheeEee
Confidence            334567789999999999998888875

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.91  E-value=4.3e-22  Score=210.18  Aligned_cols=174  Identities=13%  Similarity=0.130  Sum_probs=149.1

Q ss_pred             ceehHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhHhhhhchhhhhhhhhhccchhHHHHHHHHHHHH
Q 008096           17 ITMPFIFANEVCEKLAVVGFHANMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADTYAGRFWTITVASIIYQI   96 (577)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~lg~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~i   96 (577)
                      +.++.+....+......+...+.+|. +++++|.|.++.+++.+.+.++..+++++.|+++||+ |||+++.++.++..+
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~   80 (382)
T PRK10091          3 KVILSLALGTFGLGMAEFGIMGVLTE-LAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRY-SLKHILLFLVALCVI   80 (382)
T ss_pred             chHHHHHHHHHHHHhhHHHHHhChHH-HHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccC-ccHHHHHHHHHHHHH
Confidence            33445555666666776777777765 5578999999999999999999999999999999998 999999999999999


Q ss_pred             HHHHHHHhhhcCCCCCCCCCCCCcccccccchhHHHHHHHHHHHhccCCcccchhhhhhccCCCCCchhhhhhhhhhhHH
Q 008096           97 GMFSLTLSAILPQLRPPPCQGDQVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWY  176 (577)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  176 (577)
                      +.++++++.                      +++.+++.|++.|++.+...+...+++.|++|+++      |+++.+.+
T Consensus        81 ~~~l~~~~~----------------------~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~  132 (382)
T PRK10091         81 GNAMFTLSS----------------------SYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGK------VTAAVAGM  132 (382)
T ss_pred             HHHHHHHhC----------------------cHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHH------hhHHHHHH
Confidence            999998876                      78889999999999999988888999999998766      88899999


Q ss_pred             HHHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHHHHHHHHH
Q 008096          177 YFVMGAAVLVAVTVLVYIQDNVGWNWGLGIPTVAMFLSIIAFVF  220 (577)
Q Consensus       177 ~~~~~ig~~lg~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~  220 (577)
                      ..+..+|..++|.+++++.+..|||++|++.++..++..+....
T Consensus       133 ~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~  176 (382)
T PRK10091        133 VSGMTVANLLGIPLGTYLSQEFSWRYTFLLIAVFNIAVLASIYF  176 (382)
T ss_pred             HHHHHHHHHHhccHHHHHhhhccHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999998899999999888766555444333

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.91  E-value=1.2e-22  Score=221.72  Aligned_cols=169  Identities=12%  Similarity=0.176  Sum_probs=145.0

Q ss_pred             CCCcceehHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhHhhhhchhhhhhhhhhccchhHHHHHHHH
Q 008096           13 KGGIITMPFIFANEVCEKLAVVGFHANMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADTYAGRFWTITVASI   92 (577)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~lg~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~   92 (577)
                      +.+|+.+..+....++..+..+.+. .+..++.+++|+|..+.+++.+.+.++..+++++.|+++||+ |||+++..+.+
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~   93 (496)
T PRK03893         16 RAQWKAFSAAWLGYLLDGFDFVLIT-LVLTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRY-GRRLAMVISIV   93 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHH
Confidence            4556655555556666656555444 444567789999999999999999999999999999999998 99999999999


Q ss_pred             HHHHHHHHHHHhhhcCCCCCCCCCCCCcccccccchhHHHHHHHHHHHhccCCcccchhhhhhccCCCCCchhhhhhhhh
Q 008096           93 IYQIGMFSLTLSAILPQLRPPPCQGDQVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKY  172 (577)
Q Consensus        93 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~  172 (577)
                      +..++.+.++++.                      +++.+++.|++.|++.++..+...+++.|.+|+++      |+++
T Consensus        94 ~~~~~~~~~~~~~----------------------~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~~  145 (496)
T PRK03893         94 LFSVGTLACGFAP----------------------GYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHL------RNKA  145 (496)
T ss_pred             HHHHHHHHHHHHh----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH------HHHH
Confidence            9999999888876                      67889999999999999999999999999999877      8999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHhhcccccchhhhHHHHHHH
Q 008096          173 FNWYYFVMGAAVLVAVTVLVYIQDNVGWNWGLGIPTVAM  211 (577)
Q Consensus       173 ~~~~~~~~~ig~~lg~~i~~~l~~~~gw~~~f~~~~~~~  211 (577)
                      .++++.+.++|..++|.+.+++.+.+|||+.|++..+..
T Consensus       146 ~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~f~~~~~~~  184 (496)
T PRK03893        146 SGFLISGFSIGAVVAAQVYSLVVPVWGWRALFFIGILPI  184 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHH
Confidence            999999999999999999999999999999998755443

>TIGR00898 2A0119 cation transport protein

Probab=99.91  E-value=1e-22  Score=222.96  Aligned_cols=147  Identities=17%  Similarity=0.242  Sum_probs=129.9

Q ss_pred             HHHHHhcCCC---hHHHHHHHHHHhHhhhhchhhhhhhhhhccchhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCC
Q 008096           42 SYLTTQLHMP---LTKAANTLTNFGGTGSLTPLIGAFVADTYAGRFWTITVASIIYQIGMFSLTLSAILPQLRPPPCQGD  118 (577)
Q Consensus        42 ~~l~~~lg~s---~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  118 (577)
                      ..+.+++|++   ..+.+++.+++.++..+++++.|+++||+ |||+++.++.++..++.++++++.             
T Consensus       113 ~~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~-Grr~~~~~~~~~~~i~~~~~~~~~-------------  178 (505)
T TIGR00898       113 STIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRF-GRKKVLLLSTLVTAVSGVLTAFSP-------------  178 (505)
T ss_pred             ccEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhc-cchHHHHHHHHHHHHHHHHHHHcc-------------
Confidence            3466789998   99999999999999999999999999998 999999999999999998888876             


Q ss_pred             CcccccccchhHHHHHHHHHHHhccCCcccchhhhhhccCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhcccc
Q 008096          119 QVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAVLVAVTVLVYIQDNV  198 (577)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~lg~~i~~~l~~~~  198 (577)
                               +++.+++.|++.|++.++..+...+++.|++|+++      |+++.++...+..+|.++++.++..+.+  
T Consensus       179 ---------~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~~~~~--  241 (505)
T TIGR00898       179 ---------NYTVFLVFRLLVGMGIGGIWVQAVVLNTEFLPKKQ------RAIVGTLIQVFFSLGLVLLPLVAYFIPD--  241 (505)
T ss_pred             ---------cHHHHHHHHHHHHhhccchHHHHHHHhheecChhh------hHHHHHHHHHHHHHHHHHHHHHHHHhhH--
Confidence                     78889999999999999999999999999999888      9999999988999999999988766643  


Q ss_pred             cchhhhHHHHHHHHHHHHHHHH
Q 008096          199 GWNWGLGIPTVAMFLSIIAFVF  220 (577)
Q Consensus       199 gw~~~f~~~~~~~~~~~~~~~~  220 (577)
                       ||+.|++.++..++..+..++
T Consensus       242 -wr~~~~~~~i~~~~~~~~~~~  262 (505)
T TIGR00898       242 -WRWLQLAVSLPTFLFFLLSWF  262 (505)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHh
Confidence             999998888776665555443

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.91  E-value=3.7e-23  Score=209.85  Aligned_cols=411  Identities=12%  Similarity=0.057  Sum_probs=264.2

Q ss_pred             ccCCCcceehHHHHHHHHHHHHHHHHHHH---HHHHHHHhcCCChHHHHHHHHHHhHhhhhchhhhhhhhhhccchhHHH
Q 008096           11 RKKGGIITMPFIFANEVCEKLAVVGFHAN---MISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADTYAGRFWTI   87 (577)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---l~~~l~~~lg~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~   87 (577)
                      .++.+.|.-+.++...++....+|.+.-.   ..+++.++.++|.+|.|.+.+.+.+++.++-.+.|.++||. +.|+.+
T Consensus        19 ~~~~y~~~r~qif~~~fiGYa~fYl~RknF~~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~-npr~fm   97 (448)
T COG2271          19 IDKTYKRWRIQIFLSIFIGYAAFYLTRKNFNLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRS-NPRYFM   97 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccC-CCceee
Confidence            34556666667777888888888877544   46788899999999999999999999999999999999998 999999


Q ss_pred             HHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCcccccccchhHHHHHHHHHHHhccCCcccchhhhhhccCCCCCchhhh
Q 008096           88 TVASIIYQIGMFSLTLSAILPQLRPPPCQGDQVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQAT  167 (577)
Q Consensus        88 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~  167 (577)
                      .+++++.++..+++.+++                      +.+.+.+..++.|..+|.-.|.+...++.++|.+|     
T Consensus        98 ~~gLilsai~nil~Gfs~----------------------s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~e-----  150 (448)
T COG2271          98 AFGLILSAIVNILFGFSP----------------------SLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKE-----  150 (448)
T ss_pred             hHHHHHHHHHHHHHhhhh----------------------HHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccc-----
Confidence            999999999999999987                      77889999999999999999999999999999999     


Q ss_pred             hhhhhhhHHHHHHHHHHHHHHHHH--HhhcccccchhhhHHHHHHHHHH-HHHHHHccccccccCCCCChhhHHHHHHHH
Q 008096          168 KTWKYFNWYYFVMGAAVLVAVTVL--VYIQDNVGWNWGLGIPTVAMFLS-IIAFVFGYPLYRNLNPAGSPFVRLMQVCVA  244 (577)
Q Consensus       168 ~r~~~~~~~~~~~~ig~~lg~~i~--~~l~~~~gw~~~f~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (577)
                       ||+..++.+.+-|+|+.+.|++.  +++..+.+||..|++++++.++. ++++...+.+ ++...- ++..++.     
T Consensus       151 -RG~~~siWn~shNiGGal~~~~~~la~~~~~~~w~~~f~~pgiiaiival~~~~~~rd~-Pqs~GL-P~ie~~~-----  222 (448)
T COG2271         151 -RGTWWSIWNTSHNIGGALAPLVALLAFFAFHGGWRAAFYFPGIIAIIVALILLFLLRDR-PQSEGL-PPIEEYR-----  222 (448)
T ss_pred             -cCceEEEehhhhhcccchHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhCCC-ccccCC-CCHHHhh-----
Confidence             99999999999999999999999  89988889999999999876554 4444443332 111100 1111100     


Q ss_pred             HHhhccccCCCCCcccccccchhhhhhcCCcccccccchhhhhhhhccccccCCCCCcccccchhhhhhhhhhhhhhhHH
Q 008096          245 AFRKRNLDMVSDPNVLYQNEELDASICLDGKLLHTKHMKFLDKAAIVTEEDDIKSPNLWRLNTVHRVEELKSVIRMGPIW  324 (577)
Q Consensus       245 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~l~  324 (577)
                                +++.+.++.++                              +.+....|+++. +-+...|.+   +.+.
T Consensus       223 ----------~d~~e~~~~~~------------------------------~~~~ls~~~i~~-~YVL~Nk~i---W~la  258 (448)
T COG2271         223 ----------GDPLEIYEEEK------------------------------ENEGLTAWQIFV-KYVLKNKLI---WLLA  258 (448)
T ss_pred             ----------cCchhhhhhhc------------------------------cCCCccHHHHHH-HHHHcChHH---HHHH
Confidence                      00100100000                              000111121111 111111211   2222


Q ss_pred             HHHHHHHHHhhccceeEEeecccccccccccccc-ccchhhhhhHHHHHHHHHhhhhhhhhccccccCCCCCCCchhHHH
Q 008096          325 ASGILLITAYAQQGTFSLQQAKSMDRHLTKSFQI-PAGSMSVFTMVSMLSTIALYDRIIIPVARKFTGLDRGITFLHRMG  403 (577)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~  403 (577)
                      +..+..|.+-....   ...+.+..+..  +++. .+....++...+.+.+..+.+++.|++.+    .+|  .+.  -+
T Consensus       259 ~a~vfvYivR~gi~---dW~p~YL~e~k--~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfk----grR--~p~--~~  325 (448)
T COG2271         259 LANVFVYVVRYGIN---DWGPLYLSEVK--GFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFK----GRR--GPM--AL  325 (448)
T ss_pred             HHHHHHHHHHHHHh---hhHHHHHHHhc--CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcc----ccc--chH--HH
Confidence            22333333322211   11111222222  3332 24445555666777777777775555442    222  121  23


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccccchhhHHHHHHHHHHHHHHHHhhhhh--hhhhcccCcccHHHH
Q 008096          404 IGFVISVLATLVAGFVEMKRKQAALAHGLVDKPHIIIPISVLWLVPQYSLHGIAEAFMSVGHL--EFLYDQAPESMRSTA  481 (577)
Q Consensus       404 ig~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~gi~~~~~~~~~~--~~v~~~~P~~~rg~~  481 (577)
                      +.+++..++...+-..+                    ..+++.  ...++..+|.....|...  ....|.+|++..|++
T Consensus       326 i~~~~i~~~~~~~w~~~--------------------~~~~~l--~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~AaGtA  383 (448)
T COG2271         326 IFMLLITASLVLYWLAP--------------------NGSYLL--DAILLFIIGFLIYGPQMLIGLAAAEFVPKKAAGTA  383 (448)
T ss_pred             HHHHHHHHHHHHHHcCC--------------------CccHHH--HHHHHHHHHHHHhhHHHHHHHHHhccccHhhccch
Confidence            33333333333222211                    113333  333444555555555533  368899999999999


Q ss_pred             HHHHHHHHhH-HHHHHHHHHHHHhhhcCCCCCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhhhhhcccc
Q 008096          482 TALFWTANSI-GNYVSTLLVTLVHKFSAGPNGSNWLPDNNLNKGKLEYFYWLITLLQVVNVIYYFFCAKIYTF  553 (577)
Q Consensus       482 ~gi~~~~~~l-g~~l~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  553 (577)
                      .|+...+..+ |+..+....+.+.|..      +|.           ..|.++.+.++++.+.+..+.+..++
T Consensus       384 ~Gf~Glf~Yl~Ga~~a~~~~g~i~d~~------gW~-----------g~Fi~~~~~a~l~~lll~~~~~~~~~  439 (448)
T COG2271         384 TGFVGLFAYLIGAALAGLPLGYIADTW------GWD-----------GGFIVLSIAALLAILLLLPVWNAEER  439 (448)
T ss_pred             hchhhhHHHHhhHHhcCCcceeeEecC------CCc-----------chHHHHHHHHHHHHHHHHHHHhhcch
Confidence            9999998888 8888888877765532      443           34888888888888887777664433

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.91  E-value=3.7e-22  Score=206.04  Aligned_cols=347  Identities=17%  Similarity=0.257  Sum_probs=255.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhHhhhhchhhhhhhhhhccchhHHHHHHHHHHHHHHHH
Q 008096           21 FIFANEVCEKLAVVGFHANMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADTYAGRFWTITVASIIYQIGMFS  100 (577)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~l~~~l~~~lg~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~i~~~~  100 (577)
                      .+....++..+..+...+.++.|.+ ++|.+..+.+++.+...++..+++++.|+++||+ |||+.+.++.++..++.+.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~-g~r~~~~~~~~~~~~~~~~   80 (352)
T cd06174           3 LLFLGFFLSGLDRGLLSPALPLLAE-DLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRF-GRRRVLLLGLLLFALGSLL   80 (352)
T ss_pred             HHHHHHHHHHHhhhhhHhhHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-CCchhhHHHHHHHHHHHHH
Confidence            4455677788888888888888774 6799999999999999999999999999999998 9999999999999999998


Q ss_pred             HHHhhhcCCCCCCCCCCCCcccccccchhHHHHHHHHHHHhccCCcccchhhhhhccCCCCCchhhhhhhhhhhHHHHHH
Q 008096          101 LTLSAILPQLRPPPCQGDQVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVM  180 (577)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~  180 (577)
                      +.+..                      +.+.+++.|++.|++.+...+...+++.|.+|+++      |++.+++.+...
T Consensus        81 ~~~~~----------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~  132 (352)
T cd06174          81 LAFAS----------------------SLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKE------RGRALGLFSAGF  132 (352)
T ss_pred             HHHhc----------------------cHHHHHHHHHHHHcccccccHhHHHHHHHhCCccc------hhhhhhHHHHHH
Confidence            88765                      67889999999999999999999999999999887      999999999999


Q ss_pred             HHHHHHHHHHHHhhcccccchhhhHHHHHHHHHHHHHHHHccccccccCCCCChhhHHHHHHHHHHhhccccCCCCCccc
Q 008096          181 GAAVLVAVTVLVYIQDNVGWNWGLGIPTVAMFLSIIAFVFGYPLYRNLNPAGSPFVRLMQVCVAAFRKRNLDMVSDPNVL  260 (577)
Q Consensus       181 ~ig~~lg~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  260 (577)
                      ++|..++|.+.+.+.+..+|++.+++.++..++..+......             +++.                     
T Consensus       133 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~---------------------  178 (352)
T cd06174         133 GLGALLGPLLGGLLAESLGWRWLFLILAILGLLLALLLLFLL-------------RLLL---------------------  178 (352)
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH-------------HHHH---------------------
Confidence            999999999999999888999999888877666555443321             0000                     


Q ss_pred             ccccchhhhhhcCCcccccccchhhhhhhhccccccCCCCCcccccchhhhhhhhhhhhhhhHHHHHHHHHHHhhcccee
Q 008096          261 YQNEELDASICLDGKLLHTKHMKFLDKAAIVTEEDDIKSPNLWRLNTVHRVEELKSVIRMGPIWASGILLITAYAQQGTF  340 (577)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~l~~~~~~~~~~~~~~~~~  340 (577)
                                                                               ....................+.+
T Consensus       179 ---------------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~  201 (352)
T cd06174         179 ---------------------------------------------------------LLALAFFLLSFGYYGLLTYLPLY  201 (352)
T ss_pred             ---------------------------------------------------------HHHHHHHHHHhHHHHHHHHHHHH
Confidence                                                                     00000001111111111111111


Q ss_pred             EEeeccccccccccccccccchhhhhhHHHHHHHHHhhhhhhhhccccccCCCCCCCchhHHHHHHHHHHHHHHHHHHHH
Q 008096          341 SLQQAKSMDRHLTKSFQIPAGSMSVFTMVSMLSTIALYDRIIIPVARKFTGLDRGITFLHRMGIGFVISVLATLVAGFVE  420 (577)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ig~~~~~l~~~~~~~~~  420 (577)
                             .+...+ ......+.......+...+..++.++    +.||.++|+.      .+..+..+..++++......
T Consensus       202 -------~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~----~~~~~~~~~~------~~~~~~~~~~i~~~~~~~~~  263 (352)
T cd06174         202 -------LQEVLG-LSAAEAGLLLSLFGLGGILGALLGGL----LSDRLGRRRL------LLLIGLLLAALGLLLLALAP  263 (352)
T ss_pred             -------HHHhcC-CCHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHhhhH------HHHHHHHHHHHHHHHHHHhc
Confidence                   010000 00111334455555666666666554    5566654430      27778777777776665544


Q ss_pred             HHHHHHHHhcCCCCCCCccccchhhHHHHHHHHHHHHHHHHhhhhhhhhhcccCcccHHHHHHHHHHHHhHHHHHHHHHH
Q 008096          421 MKRKQAALAHGLVDKPHIIIPISVLWLVPQYSLHGIAEAFMSVGHLEFLYDQAPESMRSTATALFWTANSIGNYVSTLLV  500 (577)
Q Consensus       421 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~gi~~~~~~~~~~~~v~~~~P~~~rg~~~gi~~~~~~lg~~l~~~i~  500 (577)
                                            +.+...+..++.+++.+...+....++.|..|++.|++.+|+.+..+.+|..+++.+.
T Consensus       264 ----------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~  321 (352)
T cd06174         264 ----------------------SLALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLA  321 (352)
T ss_pred             ----------------------cHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                                  4566677888899999999999999999999999999999999999999999999999


Q ss_pred             HHHhhhcCCCCCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHh
Q 008096          501 TLVHKFSAGPNGSNWLPDNNLNKGKLEYFYWLITLLQVVNVIYYF  545 (577)
Q Consensus       501 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  545 (577)
                      +.+.+..                 ++...+.+.+++.+++.+..+
T Consensus       322 g~l~~~~-----------------~~~~~~~~~~~~~~i~~i~~~  349 (352)
T cd06174         322 GLLLDTG-----------------GYGGVFLILAALALLAALLLL  349 (352)
T ss_pred             HHHhccc-----------------CcchHHHHHHHHHHHHHHHhe
Confidence            9875422                 224446777777777666554

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.91  E-value=8.7e-22  Score=208.68  Aligned_cols=180  Identities=9%  Similarity=0.055  Sum_probs=131.2

Q ss_pred             cceehHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhH-hhhhchhhhhhhhhhccchhHHH-HHHHHH
Q 008096           16 IITMPFIFANEVCEKLAVVGFHANMISYLTTQLHMPLTKAANTLTNFGG-TGSLTPLIGAFVADTYAGRFWTI-TVASII   93 (577)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~lg~s~~~~~~i~~~~~~-~~~~~~~~~G~laDr~~Grk~~~-~~~~~~   93 (577)
                      ......++...++.+++...+.+.++.|+.+++|.|.++.|++.+.+.+ +..+.++++|+ +||+ ||||.+ ..+.++
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~-g~r~~~~~~~~~~   91 (393)
T PRK15011         14 DLTSTAFLIVAFLTGIAGALQTPTLSIFLTDEVHARPAMVGFFFTGSAVIGILVSQFLAGR-SDKR-GDRKSLIVFCCLL   91 (393)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-Hhcc-cchhHHHHHHHHH
Confidence            4555666777899999989999999999999999999999999877655 55555555665 9998 998875 455555


Q ss_pred             HHHHHHHHHHhhhcCCCCCCCCCCCCcccccccchhHHHHHHHHHHHhccCCcccchhhhhhccCCCCCchhhhhhhhhh
Q 008096           94 YQIGMFSLTLSAILPQLRPPPCQGDQVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYF  173 (577)
Q Consensus        94 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  173 (577)
                      ..++..+++++.                      +++.+++.+.+.+...+...|...++..|+.++++  |  ..+...
T Consensus        92 ~~~~~~~~~~~~----------------------~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~  145 (393)
T PRK15011         92 GVLACTLFAWNR----------------------NYFVLLFVGVFLSSFGSTANPQMFALAREHADKTG--R--EAVMFS  145 (393)
T ss_pred             HHHHHHHHHHhh----------------------HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcc--c--hHHHHH
Confidence            556666666655                      55555555444444445667888888888665433  0  123455


Q ss_pred             hHHHHHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHHHHHHHHHccc
Q 008096          174 NWYYFVMGAAVLVAVTVLVYIQDNVGWNWGLGIPTVAMFLSIIAFVFGYP  223 (577)
Q Consensus       174 ~~~~~~~~ig~~lg~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~  223 (577)
                      ++.+.+.++|.++||.+++++.+.+|||..|++.++..++..+.+....|
T Consensus       146 ~~~~~~~~lg~~~g~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~  195 (393)
T PRK15011        146 SFLRAQVSLAWVIGPPLAYALAMGFSFTVMYLSAAVAFIVCGVMVWLFLP  195 (393)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhhcC
Confidence            78888999999999999999998899999998888766555444444333

>TIGR00895 2A0115 benzoate transport

Probab=99.91  E-value=3.4e-22  Score=210.52  Aligned_cols=178  Identities=12%  Similarity=0.099  Sum_probs=146.4

Q ss_pred             CCCcceehHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhHhhhhchhhhhhhhhhccchhHHHHHHHH
Q 008096           13 KGGIITMPFIFANEVCEKLAVVGFHANMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADTYAGRFWTITVASI   92 (577)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~lg~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~   92 (577)
                      +.+|+.........+......+.. .+..+++.+++|+|..+.+++.+.+.++..++.++.|+++||+ |||+.+..+.+
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~   90 (398)
T TIGR00895        13 RYQWRAIILSFLIMLMDGYDLAAM-GFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRI-GRKRVLLWSIL   90 (398)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHh-hhHHHHHHHHH
Confidence            445555555444555554444433 4445566678999999999999999999999999999999998 99999999999


Q ss_pred             HHHHHHHHHHHhhhcCCCCCCCCCCCCcccccccchhHHHHHHHHHHHhccCCcccchhhhhhccCCCCCchhhhhhhhh
Q 008096           93 IYQIGMFSLTLSAILPQLRPPPCQGDQVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKY  172 (577)
Q Consensus        93 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~  172 (577)
                      +..++.+++.++.                      +.+.+++.|++.|++.+...+...+++.|.+|+++      |+++
T Consensus        91 ~~~~~~~~~~~~~----------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------r~~~  142 (398)
T TIGR00895        91 LFSVFTLLCALAT----------------------NVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRF------RGTA  142 (398)
T ss_pred             HHHHHHHHHHHcc----------------------chHHHHHHHHHHhcccccchhhHHHHHHHHcCHHh------hchh
Confidence            8888888887755                      67778899999999999999999999999999877      9999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHHHHHHHHH
Q 008096          173 FNWYYFVMGAAVLVAVTVLVYIQDNVGWNWGLGIPTVAMFLSIIAFVF  220 (577)
Q Consensus       173 ~~~~~~~~~ig~~lg~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~  220 (577)
                      .++.+.+..+|..+++.+++++.+..||++.|++.++..++..++...
T Consensus       143 ~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~  190 (398)
T TIGR00895       143 VGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYVGGIAPLLLLLLLMR  190 (398)
T ss_pred             HhhHhhHHHHHHHHHHHHHHHHhhcccceeehhhhhhHHHHHHHHHHH
Confidence            999999999999999999999999999999998886554444443333

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.91  E-value=8.4e-22  Score=207.23  Aligned_cols=178  Identities=17%  Similarity=0.154  Sum_probs=150.0

Q ss_pred             CcceehHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhHhhhhchhhhhhhhhhccchhHHHHHHHHHH
Q 008096           15 GIITMPFIFANEVCEKLAVVGFHANMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADTYAGRFWTITVASIIY   94 (577)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~lg~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~   94 (577)
                      +++.++.+.+..+...+......+.+|. +.+++|.|.++.+++.+.+.++..+++++.|+++||+ |||+.+..+.++.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~-g~r~~~~~~~~~~   80 (385)
T TIGR00710         3 AKAFALLLGCLSILGPLGIDMYLPAFPE-IAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRY-GRRPVLLLGLFIF   80 (385)
T ss_pred             chHHHHHHHHHHHHHHHHHHHhcccHHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhc-CChHHHHHHHHHH
Confidence            3344455555555566666666666654 5678999999999999999999999999999999998 9999999999999


Q ss_pred             HHHHHHHHHhhhcCCCCCCCCCCCCcccccccchhHHHHHHHHHHHhccCCcccchhhhhhccCCCCCchhhhhhhhhhh
Q 008096           95 QIGMFSLTLSAILPQLRPPPCQGDQVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFN  174 (577)
Q Consensus        95 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  174 (577)
                      .++.+.++++.                      +.+.+++.|++.|++.+...+...+++.|.+|+++      |++.++
T Consensus        81 ~~~~~~~~~~~----------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~  132 (385)
T TIGR00710        81 ALSSLGLALSN----------------------NIETLLVLRFVQAFGASAGSVISQALVRDIYPGEE------LSRIYS  132 (385)
T ss_pred             HHHHHHHHHHc----------------------cHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHH------HHHHHH
Confidence            99998888765                      67789999999999999999999999999999877      999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHHHHHHHHHcc
Q 008096          175 WYYFVMGAAVLVAVTVLVYIQDNVGWNWGLGIPTVAMFLSIIAFVFGY  222 (577)
Q Consensus       175 ~~~~~~~ig~~lg~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~  222 (577)
                      +.+....+|..++|.+++++.+.++|++.|++.++..++..+......
T Consensus       133 ~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (385)
T TIGR00710       133 ILMPVLALAPAVAPLLGGYILVWLSWHAIFAFLSLAGILLSALIFFIL  180 (385)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhC
Confidence            999999999999999999998889999999887776655544444433

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PRK09952 shikimate transporter; Provisional

Probab=99.91  E-value=1.1e-21  Score=210.83  Aligned_cols=179  Identities=11%  Similarity=0.058  Sum_probs=131.7

Q ss_pred             CCCcceehHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCChHHHHHHH-----HHHhHhhhhchhhhhhhhhhccchhH
Q 008096           13 KGGIITMPFIFANEVCEKLAVVGFHANMISYLTTQL--HMPLTKAANTL-----TNFGGTGSLTPLIGAFVADTYAGRFW   85 (577)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l--g~s~~~~~~i~-----~~~~~~~~~~~~~~G~laDr~~Grk~   85 (577)
                      ..+|+......+..+++.+....+-...+.++.+++  +.++.+ +++.     ++..++..+++++.|+++||+ |||+
T Consensus        18 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~-Grr~   95 (438)
T PRK09952         18 SRARRAALGSFAGAVVDWYDFLLYGITAALVFNREFFPQVSPAM-GTLAAFATFGVGFLFRPLGGVVFGHFGDRL-GRKR   95 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHH-HHHHHHHHHHHHHHHHhhHHHHHHHHHHhh-ccHH
Confidence            344555555555666666666554445555666554  677663 5443     234455667888899999998 9999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCcccccccchhHHHHHHHHHHHhccCCcccchhhhhhccCCCCCchh
Q 008096           86 TITVASIIYQIGMFSLTLSAILPQLRPPPCQGDQVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQ  165 (577)
Q Consensus        86 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~  165 (577)
                      ++.++.+++.++.+++++++++..              ........+++.|+++|++.|+..|...+++.|++|+++   
T Consensus        96 ~l~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~---  158 (438)
T PRK09952         96 MLMLTVWMMGIATALIGLLPSFST--------------IGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKNK---  158 (438)
T ss_pred             HHHHHHHHHHHHHHHHhcCCcHHH--------------HHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCCC---
Confidence            999999999999999998762221              000112358889999999999999999999999999887   


Q ss_pred             hhhhhhhhhHHHHHHHHHHHHHHHHHHhhc--------ccccchhhhHHHHHHHHH
Q 008096          166 ATKTWKYFNWYYFVMGAAVLVAVTVLVYIQ--------DNVGWNWGLGIPTVAMFL  213 (577)
Q Consensus       166 ~~~r~~~~~~~~~~~~ig~~lg~~i~~~l~--------~~~gw~~~f~~~~~~~~~  213 (577)
                         |++..+..+.+..+|..++..+...+.        +.+|||++|++.++..++
T Consensus       159 ---rg~~~~~~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l~  211 (438)
T PRK09952        159 ---KAFYSSGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVLI  211 (438)
T ss_pred             ---CcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhccChHHHHHHHHHHHHH
Confidence               899999988888999888877766554        357999999887765443

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=99.91  E-value=7.7e-24  Score=216.63  Aligned_cols=182  Identities=14%  Similarity=0.175  Sum_probs=162.0

Q ss_pred             CCCcceehHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhHhhhhchhhhhhhhhhccchhHHHHHHHH
Q 008096           13 KGGIITMPFIFANEVCEKLAVVGFHANMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADTYAGRFWTITVASI   92 (577)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~lg~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~   92 (577)
                      +..++.+..+.+.++++...-|.+-..+ +-.++.+|.+++..|++.+.+.+..++.+|+.|+++||| .||+++.+|..
T Consensus        29 ~~~~~~l~il~~vnlmny~Dr~~iagv~-~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadry-NR~~v~~vG~~  106 (493)
T KOG1330|consen   29 KSPTLTLVILCLVNLMNYADRYTIAGVL-KEVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRY-NRKRVIAVGIF  106 (493)
T ss_pred             ccchHHHHHHHHHHHHHHhhhhhhhhhh-HHHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhc-CcceEEeeHHH
Confidence            3445556666778888888888776644 567788999999999999999999999999999999999 99999999999


Q ss_pred             HHHHHHHHHHHhhhcCCCCCCCCCCCCcccccccchhHHHHHHHHHHHhccCCcccchhhhhhccCCCCCchhhhhhhhh
Q 008096           93 IYQIGMFSLTLSAILPQLRPPPCQGDQVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKY  172 (577)
Q Consensus        93 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~  172 (577)
                      ++.++.+.++++.                      .+|++.+.|.+.|+|.+.+.|.++++++|.||+.+      |++.
T Consensus       107 iW~~Av~~~~fs~----------------------~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~------Rs~~  158 (493)
T KOG1330|consen  107 IWTLAVFASGFSN----------------------HFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDK------RSRV  158 (493)
T ss_pred             HHHHHHHHHHHHH----------------------HHHHHHHHHHHhccchhhhcccchhHhhhcCcchh------hhHH
Confidence            9999999999987                      88999999999999999999999999999999988      9999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHhhccccc-chhhhHHHHHHHHHHHHHHHHcccc
Q 008096          173 FNWYYFVMGAAVLVAVTVLVYIQDNVG-WNWGLGIPTVAMFLSIIAFVFGYPL  224 (577)
Q Consensus       173 ~~~~~~~~~ig~~lg~~i~~~l~~~~g-w~~~f~~~~~~~~~~~~~~~~~~~~  224 (577)
                      ++++|++.++|.++|.+++..+....+ |||+|+..+++.++..++.++..++
T Consensus       159 ~~ify~~ipvGsglG~vvgs~va~~~~~Wr~af~~~avl~vi~~~L~~~f~~e  211 (493)
T KOG1330|consen  159 LGIFYFAIPVGSGLGYVVGSVVASLTFWWRWAFRGSAVLGVIVGLLVFLFVRE  211 (493)
T ss_pred             HHHhhhhcccccceeEEeeeeeccCccceEEEEEeehHHHHHHHHHHHhhccC
Confidence            999999999999999999998887766 9999999999887766666555543

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=99.90  E-value=2.5e-21  Score=206.51  Aligned_cols=162  Identities=10%  Similarity=0.149  Sum_probs=138.5

Q ss_pred             HHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhHhhhhchhhhhhhhhhccchhHHHHHHHHHHHHHHHHHHHhhhcCCCC
Q 008096           32 AVVGFHANMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADTYAGRFWTITVASIIYQIGMFSLTLSAILPQLR  111 (577)
Q Consensus        32 ~~~~~~~~l~~~l~~~lg~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~~~  111 (577)
                      ......+.+|. +.+++|.|.++.++..+.+.++..+++++.|+++||+ |||+++..+.++..++.++++++.      
T Consensus        31 ~~~~~~p~l~~-i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~-Grr~~l~~~~~~~~~~~~~~~~a~------  102 (413)
T PRK15403         31 TTDLIQPGIIN-VVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRI-GRRPVLITGALIFTLACAATLFTT------  102 (413)
T ss_pred             HHHhhccCHHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHc-CchHHHHHHHHHHHHHHHHHHHcC------
Confidence            33444444444 6778999999999999999999999999999999998 999999999999999999998866      


Q ss_pred             CCCCCCCCcccccccchhHHHHHHHHHHHhccCCcccchhhhhhccCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHHHH
Q 008096          112 PPPCQGDQVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAVLVAVTVL  191 (577)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~lg~~i~  191 (577)
                                      +.+.++++|+++|++.+...+...+++.|.+|+++      |++.+++++.+.++|..+||.++
T Consensus       103 ----------------~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~g~~lg  160 (413)
T PRK15403        103 ----------------SMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTK------GIKLMAIITSIVLVAPIIGPLSG  160 (413)
T ss_pred             ----------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH------HHHHHHHHHHHHHHHHHHHHHHH
Confidence                            67889999999999998777777888999999877      88999999999999999999999


Q ss_pred             HhhcccccchhhhHHHHHHHHHHHHHHHHccc
Q 008096          192 VYIQDNVGWNWGLGIPTVAMFLSIIAFVFGYP  223 (577)
Q Consensus       192 ~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~  223 (577)
                      +.+.+.+|||+.|++.++..+++.+...+..|
T Consensus       161 ~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~lp  192 (413)
T PRK15403        161 AALMHFVHWKVLFAIIAVMGLIAFVGLLLAMP  192 (413)
T ss_pred             HHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            99988889999999888776666554443333

>TIGR00897 2A0118 polyol permease family

Probab=99.90  E-value=3.9e-21  Score=204.31  Aligned_cols=174  Identities=13%  Similarity=0.153  Sum_probs=145.2

Q ss_pred             ccCCCcceehHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhHhhhhchhhhhhhhhhccchhHHHHHH
Q 008096           11 RKKGGIITMPFIFANEVCEKLAVVGFHANMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADTYAGRFWTITVA   90 (577)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~lg~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~   90 (577)
                      +|.+-||++....+..++..++.+....+++.++ +++|.|.++.+++.+.+.++..++.++.|+++||+ |||+++..+
T Consensus         7 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~-g~k~~l~~~   84 (402)
T TIGR00897         7 QKIGIPLNLLWGYIGVVVFMTGDGLEQGWLSPFL-KALGLSPQQSASAFTLYGIAAAISAWISGVVAEII-GPLKTMMIG   84 (402)
T ss_pred             HHcCCCchhhHHHHHHHHHHHhhhhHHHhHHHHH-HHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHc-CcHHHHHHH
Confidence            4556777788888888888888888888899988 57899999999999999999999999999999998 999999999


Q ss_pred             HHHHHHHHHHHHHhhhcCCCCCCCCCCCCcccccccchhHHHHHHHHHHHhccCCcccchhhhhhccCCCCCchhhhhhh
Q 008096           91 SIIYQIGMFSLTLSAILPQLRPPPCQGDQVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTW  170 (577)
Q Consensus        91 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~  170 (577)
                      .++..++.+++.+.. ..                 ..+++.+++.|++.|+|.+...+...+.+.+.+|+++      |+
T Consensus        85 ~~~~~~~~~~~~~~~-~~-----------------~~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~------~g  140 (402)
T TIGR00897        85 LLLWCVGHAAFIVFG-LG-----------------HANYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQDN------LS  140 (402)
T ss_pred             HHHHHHHHHHHHHHh-cc-----------------CccHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHHH------HH
Confidence            999888876654321 00                 1256778889999999998888888888999999877      99


Q ss_pred             hhhhHHHHHHHHHH-HHHHHHHHhhcccccchhhhHHHHHH
Q 008096          171 KYFNWYYFVMGAAV-LVAVTVLVYIQDNVGWNWGLGIPTVA  210 (577)
Q Consensus       171 ~~~~~~~~~~~ig~-~lg~~i~~~l~~~~gw~~~f~~~~~~  210 (577)
                      ++.++++.+.++|. .++|.+++++.+.+||+..++.....
T Consensus       141 ~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g~~~~~~~~~~~  181 (402)
T TIGR00897       141 SAVGWFWAVYSIGIGVFGSYYSSYAIPAFGEMNTLWSALAF  181 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHH
Confidence            99999999999996 68999999988888977666555443

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=99.90  E-value=1.7e-21  Score=206.37  Aligned_cols=176  Identities=14%  Similarity=0.114  Sum_probs=149.4

Q ss_pred             cCCCcceehHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhHhhhhchhhhhhhhhhccchhHHHHHHH
Q 008096           12 KKGGIITMPFIFANEVCEKLAVVGFHANMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADTYAGRFWTITVAS   91 (577)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~lg~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~   91 (577)
                      +++.+|..+.+.....+..+......+.+|.+ .+++|.|..+.+++.+.+.++..+++++.|+++||+ |||+.+.++.
T Consensus         3 ~~~~~~~l~~~~~~~~~~~~~~~~~~p~~~~i-~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~-grr~~~~~~~   80 (394)
T PRK11652          3 RQRNVNLLFMLVLLVAVGQMAQTIYVPAIADM-ARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRV-GRRPVILVGM   80 (394)
T ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHhccHHHH-HHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhc-CChHHHHHHH
Confidence            34466777777777777777766666666655 478999999999999999999999999999999998 9999999999


Q ss_pred             HHHHHHHHHHHHhhhcCCCCCCCCCCCCcccccccchhHHHHHHHHHHHhccCCcccchhhhhhccCCCCCchhhhhhhh
Q 008096           92 IIYQIGMFSLTLSAILPQLRPPPCQGDQVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWK  171 (577)
Q Consensus        92 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~  171 (577)
                      ++..++.+.+.++.                      +.+.+++.|++.|++.+...+....+..|.+++++      |++
T Consensus        81 ~~~~~~~~~~~~~~----------------------~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~  132 (394)
T PRK11652         81 SIFILGTLVALFAH----------------------SLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQ------LRH  132 (394)
T ss_pred             HHHHHHHHHHHHHc----------------------cHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHH------HHH
Confidence            99999988888765                      67789999999999999888888888899888766      888


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHHHHHH
Q 008096          172 YFNWYYFVMGAAVLVAVTVLVYIQDNVGWNWGLGIPTVAMFLSIIA  217 (577)
Q Consensus       172 ~~~~~~~~~~ig~~lg~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~  217 (577)
                      +.++++.+..+|..++|.+++++.+..||++.|++.++..++..+.
T Consensus       133 ~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~  178 (394)
T PRK11652        133 ANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFLLLLGAGVTFS  178 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHH
Confidence            8999999999999999999999988889999998877655544333

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.90  E-value=2.2e-21  Score=204.69  Aligned_cols=156  Identities=14%  Similarity=0.125  Sum_probs=138.7

Q ss_pred             cceehHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhHhhhhchhhhhhhhhhccchhHHHHHHHHHHH
Q 008096           16 IITMPFIFANEVCEKLAVVGFHANMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADTYAGRFWTITVASIIYQ   95 (577)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~lg~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~   95 (577)
                      .|.++++++..++..++...+.+++|.|++ ++|.|.+++|++.+.+.++..+++++.|+++||+ |||+.+..+.++..
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~-~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~-g~k~~~~~~~~~~~   82 (381)
T PRK03633          5 TRPVLLLLCGLLLLTLAIAVLNTLVPLWLA-QEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRI-GFNRSYYLASLIFA   82 (381)
T ss_pred             HHHHHHHHHHHHHHHHhhhhHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHHHH
Confidence            355778888888888888888899998886 6899999999999999999999999999999998 99999999999999


Q ss_pred             HHHHHHHHhhhcCCCCCCCCCCCCcccccccchhHHHHHHHHHHHhccCCcccchhhhhhccCCCCCchhhhhhhhhhhH
Q 008096           96 IGMFSLTLSAILPQLRPPPCQGDQVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNW  175 (577)
Q Consensus        96 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  175 (577)
                      ++...++++.                      +++.+++.|+++|++.+...|...+.+.+..++++      |+++++.
T Consensus        83 ~~~~~~~~~~----------------------~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~  134 (381)
T PRK03633         83 AGCAGLGLMV----------------------GFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRN------RGRLLAA  134 (381)
T ss_pred             HHHHHHHHhc----------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH------HHHHHHH
Confidence            9988888765                      67889999999999999998888888888888766      8999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhcccccch
Q 008096          176 YYFVMGAAVLVAVTVLVYIQDNVGWN  201 (577)
Q Consensus       176 ~~~~~~ig~~lg~~i~~~l~~~~gw~  201 (577)
                      ++.+.++|..+||.+++.+.+...|.
T Consensus       135 ~~~~~~~g~~~g~~~~~~l~~~~~~~  160 (381)
T PRK03633        135 YMMVYYLGTVLGQLLVSKVSTELMSV  160 (381)
T ss_pred             HHHHHHHHHHHHHHHHhcccccccch
Confidence            99999999999999999987654333

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.90  E-value=8.9e-22  Score=210.44  Aligned_cols=392  Identities=8%  Similarity=-0.024  Sum_probs=226.7

Q ss_pred             ceehHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhHhhhhchhhhhhhhhhccchhHHHHHHHHHHHH
Q 008096           17 ITMPFIFANEVCEKLAVVGFHANMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADTYAGRFWTITVASIIYQI   96 (577)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~lg~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~i   96 (577)
                      +..+......++..++++.+.++++.|+++++|+|..+.+++.+.+.++..+++++.|+++||+ |||+++.++..+..+
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~-g~r~~~~~~~~~~~~   88 (420)
T PRK09528         10 PNYWIFSLFFFFFFFIWSSWFSFFPIWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDKL-GLKKHLLWIISGLLV   88 (420)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHH
Confidence            5666666778888888888999999999999999999999999999999999999999999998 999998887666554


Q ss_pred             HHHHHHHhhhcCCCCCCCCCCCCcccccccchhH-HHHHHHHHHHhccCCcccchhhhhhccCCCCCchhhhhhhhhhhH
Q 008096           97 GMFSLTLSAILPQLRPPPCQGDQVCKEADTGQLA-ILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNW  175 (577)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  175 (577)
                      +..........+                   ... ....+..+.++..+...+.....+.++.++.    .++++..++.
T Consensus        89 ~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~g~~~g~  145 (420)
T PRK09528         89 LFGPFFIYVFAP-------------------LLQYNILLGAIVGGIYLGFGFLAGAGAIEAYIERV----SRRSGFEYGR  145 (420)
T ss_pred             HHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHhhhhhccchhhhhhHHHHH----Hhhccccchh
Confidence            433221110000                   000 0112222233333333333333333332211    1126677888


Q ss_pred             HHHHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHHHHHHHHHccccccccCCCCChhhHHHHHHHHHHhhccccCCC
Q 008096          176 YYFVMGAAVLVAVTVLVYIQDNVGWNWGLGIPTVAMFLSIIAFVFGYPLYRNLNPAGSPFVRLMQVCVAAFRKRNLDMVS  255 (577)
Q Consensus       176 ~~~~~~ig~~lg~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (577)
                      .+...++|..++|.+++++.+ .+|++.|++.++..++..+..+...++.++++...               +++  .++
T Consensus       146 ~~~~~~~g~~i~~~~~g~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~--~~~  207 (420)
T PRK09528        146 ARMWGSLGWALCAFIAGILFN-INPQINFWLGSGSALILLVLLFFAKPDAPSTAKVA---------------NAL--GAN  207 (420)
T ss_pred             hHHhhhHHHHHHHHHHHHHHh-cCchHhHHHHHHHHHHHHHHHhcccccccchhhhc---------------cch--hcc
Confidence            888899999999999998875 58999998888776665555444333211100000               000  000


Q ss_pred             CCcccccccchhhhhhcCCcccccccchhhhhhhhccccccCCCCCcccccchhhhhhhhhhhhhhhHHHHHHHHHH-Hh
Q 008096          256 DPNVLYQNEELDASICLDGKLLHTKHMKFLDKAAIVTEEDDIKSPNLWRLNTVHRVEELKSVIRMGPIWASGILLIT-AY  334 (577)
Q Consensus       256 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~l~~~~~~~~~-~~  334 (577)
                      .+                                          +..++.  .....+.+.+.............+. ..
T Consensus       208 ~~------------------------------------------~~~~~~--~~~~l~~~~~~~l~l~~~~~~~~~~~~~  243 (420)
T PRK09528        208 AS------------------------------------------AVSLKD--ALALLKLPKFWFLVLYVIGVACFYDVFD  243 (420)
T ss_pred             cc------------------------------------------cccHHH--HHHHccCCCeEeehHHHHHHHHHHHHHH
Confidence            00                                          000000  0000011111111111111111111 11


Q ss_pred             hccceeEEeeccccccccccccccccchhhhhhHHHHHHHHHhhhhhhhhccccccCCCCCCCchhHHHHHHHHHHHHHH
Q 008096          335 AQQGTFSLQQAKSMDRHLTKSFQIPAGSMSVFTMVSMLSTIALYDRIIIPVARKFTGLDRGITFLHRMGIGFVISVLATL  414 (577)
Q Consensus       335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ig~~~~~l~~~  414 (577)
                      .+.+.+..  ....+...+   ....+.+.....+...+..++.+    ++.||+++|+.       +.++.++..++.+
T Consensus       244 ~~~~~~~~--~~~~~~~~~---~~~~g~~~~~~~~~~~~~~~~~g----~l~dr~g~~~~-------~~~~~~l~~~~~~  307 (420)
T PRK09528        244 QQFPNFFA--SFFATPEQG---TRVFGYLNSFQVFLEALIMFFAP----FIINRIGAKNA-------LLLAGTIMAVRII  307 (420)
T ss_pred             HHHHHHHH--HHHhccCcc---hHHHHHHHHHHHHHHHHHHHHHH----HHHHHhCcchh-------hHHHHHHHHHHHH
Confidence            11122111  000010110   00112333334444445555544    46677765543       6666777777666


Q ss_pred             HHHHHHHHHHHHHHhcCCCCCCCccccchhhHHHHHHHHHHHHHHHHhhhhhhhhhcccCcccHHHHHHH-HHHHHhHHH
Q 008096          415 VAGFVEMKRKQAALAHGLVDKPHIIIPISVLWLVPQYSLHGIAEAFMSVGHLEFLYDQAPESMRSTATAL-FWTANSIGN  493 (577)
Q Consensus       415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~gi~~~~~~~~~~~~v~~~~P~~~rg~~~gi-~~~~~~lg~  493 (577)
                      +..+.+                      +++.++...++.+++.....+....++.+..|++.+++..+. +++...+|.
T Consensus       308 l~~~~~----------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~  365 (420)
T PRK09528        308 GSGFAT----------------------GPLEVSILKLLHAFEVPFLLVGVFKYITLNFDVRLSATIYLVGFQFAKQLGA  365 (420)
T ss_pred             HHHhcc----------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccceeeeeeehHHHHHHHHH
Confidence            665543                      455556667778888877778888899999999999998766 678889999


Q ss_pred             HHHHHHHHHHhhhcCCCCCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhhhhh
Q 008096          494 YVSTLLVTLVHKFSAGPNGSNWLPDNNLNKGKLEYFYWLITLLQVVNVIYYFFCAK  549 (577)
Q Consensus       494 ~l~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  549 (577)
                      .+++.+.|.+.|..      +           +...|...+++.++..++.+...+
T Consensus       366 ~ig~~~~G~l~~~~------G-----------~~~~f~~~~~~~~i~~~~~~~~~~  404 (420)
T PRK09528        366 VFLSTLAGNLYDSI------G-----------FQGTYLILGGIVLLFTLISVFTLS  404 (420)
T ss_pred             HHHHHHHHHHHHhh------C-----------chHHHHHHHHHHHHHHHHHHHHhc
Confidence            99999999987754      2           244477777777666666555444

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=99.90  E-value=4.3e-21  Score=203.40  Aligned_cols=165  Identities=15%  Similarity=0.100  Sum_probs=136.0

Q ss_pred             eehHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhHhhhhchhhhhhhhhhccchhHHHHHHHHHHHHH
Q 008096           18 TMPFIFANEVCEKLAVVGFHANMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADTYAGRFWTITVASIIYQIG   97 (577)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~lg~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~i~   97 (577)
                      ..+.+....++..++...+...++.. .+++|.+..+.+++.+.+.+.+.++.++.|+++||+ |||+++.++.++..++
T Consensus         4 ~f~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~-grr~vl~~~~~~~~~~   81 (393)
T PRK11195          4 GFYAIMAAQFFSALADNALLFAAIAL-LKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSF-PKGRVMFIANGIKLLG   81 (393)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHH-HHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhcc-CCchhhHHHHHHHHHH
Confidence            34555666777666555555555544 578999999999999999999999999999999999 9999999999999888


Q ss_pred             HHHHHHhhhcCCCCCCCCCCCCcccccccchhHHHHHHHHHHHhccCCcccchhhhhhccCCCCCchhhhhhhhhhhHHH
Q 008096           98 MFSLTLSAILPQLRPPPCQGDQVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYY  177 (577)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~  177 (577)
                      .+.++++.                      +   .++.|+++|++.+...|+..+++.|++|+++      |+++.++.+
T Consensus        82 ~~~~~~~~----------------------~---~~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~------~~~a~~~~~  130 (393)
T PRK11195         82 CLLMLFGI----------------------H---PLLAYGLVGIGAAAYSPAKYGILTELLPGEK------LVKANGWME  130 (393)
T ss_pred             HHHHHHHH----------------------H---HHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH------HHHHHHHHH
Confidence            88777644                      3   2678999999999999999999999999887      999999999


Q ss_pred             HHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHHHHH
Q 008096          178 FVMGAAVLVAVTVLVYIQDNVGWNWGLGIPTVAMFLSII  216 (577)
Q Consensus       178 ~~~~ig~~lg~~i~~~l~~~~gw~~~f~~~~~~~~~~~~  216 (577)
                      ...++|.++||.++|++.+. .|+..+.+.+...+++.+
T Consensus       131 ~~~~~~~~~Gp~lgG~l~~~-~~~~~~~i~~~~~~~~~~  168 (393)
T PRK11195        131 GSTIAAILLGTVLGGALADP-HAEAALAVCALIYLLAAL  168 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence            99999999999999999874 477776666554444433

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.90  E-value=7.5e-22  Score=212.23  Aligned_cols=159  Identities=11%  Similarity=0.058  Sum_probs=130.7

Q ss_pred             HHHHHHHHhcCCChHHHHHHHHHHhHhhhhchhhhhhhhhhccchhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCC
Q 008096           39 NMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADTYAGRFWTITVASIIYQIGMFSLTLSAILPQLRPPPCQGD  118 (577)
Q Consensus        39 ~l~~~l~~~lg~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  118 (577)
                      ...+++++ +|+|.++.+++.+.+.++..+++++.|+++||+ |||+.+..+.++..++.+++++..+..          
T Consensus        48 ~~~p~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-g~~~~~~~~~~~~~~~~~~~~~~~~~~----------  115 (438)
T TIGR00712        48 LAMPYLVE-QGFSKGELGFALSAISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILSAAVMLLMGFVPWAT----------  115 (438)
T ss_pred             hhhHHHHH-cCCCHhHhHHHHHHHHHHHHHhhhccchhhhcc-CCceehHHHHHHHHHHHHHHhcccccc----------
Confidence            33456665 599999999999999999999999999999998 999999999998888888776543111          


Q ss_pred             CcccccccchhHHHHHHHHHHHhccCCcccchhhhhhccCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhc-cc
Q 008096          119 QVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAVLVAVTVLVYIQ-DN  197 (577)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~lg~~i~~~l~-~~  197 (577)
                              .+...+++.|++.|++.+...+....++.|++|+++      |++++++++.+.++|..+++.+.+... ..
T Consensus       116 --------~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~------rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~  181 (438)
T TIGR00712       116 --------SSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSE------RGTIVSIWNCAHNIGGGIPPLLVLLGMAWF  181 (438)
T ss_pred             --------chHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCccc------chhHHHHHHHHHHhHhHHHHHHHHHHHHHh
Confidence                    256677889999999999999999999999999888      999999999999999999988876544 34


Q ss_pred             ccchhhhHHHHHHHHHHHHHHHHccc
Q 008096          198 VGWNWGLGIPTVAMFLSIIAFVFGYP  223 (577)
Q Consensus       198 ~gw~~~f~~~~~~~~~~~~~~~~~~~  223 (577)
                      .+||+.|++.++..++..+...+..+
T Consensus       182 ~~w~~~f~~~~~~~~i~~~~~~~~~~  207 (438)
T TIGR00712       182 NDWHAALYFPAICAIIVALFAFAMMR  207 (438)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHhcc
Confidence            68999999988776665444444333

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=99.89  E-value=2.5e-21  Score=212.19  Aligned_cols=420  Identities=13%  Similarity=0.102  Sum_probs=251.8

Q ss_pred             HHHHHHHHHHHHhc-----CCCh--HHHHHHHHHHhHhhhhchhhhhhhhhhccchhHHHHHHHHHHHHHHHHHHHhhhc
Q 008096           35 GFHANMISYLTTQL-----HMPL--TKAANTLTNFGGTGSLTPLIGAFVADTYAGRFWTITVASIIYQIGMFSLTLSAIL  107 (577)
Q Consensus        35 ~~~~~l~~~l~~~l-----g~s~--~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~i~~~~~~~~~~~  107 (577)
                      +....+..++++..     ..+.  ++.+++.+...+++.+++++.|+++|++ |||++++++.+++.+|.++++++.  
T Consensus        64 g~~s~~~~~~~~~~~~~~~~~~~~~~~~s~~~s~~~lga~~g~l~~g~l~d~~-GRk~~l~~~~~~~~iG~ii~~~a~--  140 (513)
T KOG0254|consen   64 GGISGALDFLQRFASLYDLSTGEYSVRQGLLTSILNLGALVGSLLAGRLGDRI-GRKKTLLLAVVLFLIGAIIIALAP--  140 (513)
T ss_pred             ccchhhHHHHHhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHhh--
Confidence            44455555555532     2222  4559999999999999999999999998 999999999999999999999987  


Q ss_pred             CCCCCCCCCCCCcccccccchhHHHHHHHHHHHhccCCcccchhhhhhccCCCCCchhhhhhhhhhhHHHHHHHHHHHHH
Q 008096          108 PQLRPPPCQGDQVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAVLVA  187 (577)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~lg  187 (577)
                                          ++..++++|++.|+|.|+.....+.+++|..|++.      |+...+.++....+|..++
T Consensus       141 --------------------~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~~------RG~l~~~~~l~~~~Gi~~~  194 (513)
T KOG0254|consen  141 --------------------SWYQLIVGRILTGLGVGGASVLAPVYISEIAPAHI------RGTLVSLYQLFITIGILLG  194 (513)
T ss_pred             --------------------hHHHHHHHHHHhccchhhhhhcchhhHhhcCChhh------hHHHHHHHHHHHHHHHHHH
Confidence                                78889999999999999999999999999999888      9999999999999999999


Q ss_pred             HHHHHhhccc-ccchhhhHHHHHHHHHHHHHHHHccccccccCCCCChhhHHHHHHHHHHhhccccCCCCCcccccccch
Q 008096          188 VTVLVYIQDN-VGWNWGLGIPTVAMFLSIIAFVFGYPLYRNLNPAGSPFVRLMQVCVAAFRKRNLDMVSDPNVLYQNEEL  266 (577)
Q Consensus       188 ~~i~~~l~~~-~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  266 (577)
                      .+++....+. ++||..+++..+..++..+.+++. |                               |+|+++.+.++.
T Consensus       195 ~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~~-p-------------------------------esp~~L~~~g~~  242 (513)
T KOG0254|consen  195 YCINYGTSKVYAGWRIPLGLALIPAVILALGMLFL-P-------------------------------ESPRWLIEKGRL  242 (513)
T ss_pred             HHHhhhhccCCccHHHHHHHHHHHHHHHHHHHHhC-C-------------------------------CChHHHHHcCCh
Confidence            6555444332 489988888777766655553332 2                               222222222222


Q ss_pred             hhhhhcCCcccc---cccchhhhhhh--hccccccCCCCCcccccchhhhhhhhhhhhhhhHHHHHHHHHHHhhccceeE
Q 008096          267 DASICLDGKLLH---TKHMKFLDKAA--IVTEEDDIKSPNLWRLNTVHRVEELKSVIRMGPIWASGILLITAYAQQGTFS  341 (577)
Q Consensus       267 ~~~~~~~~~~~~---~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~l~~~~~~~~~~~~~~~~~~  341 (577)
                      .+++....++..   .+....++...  ...+.........|..+..  ...+|+.+    +......+.. +.......
T Consensus       243 ~~a~~~l~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~----i~~~l~~fqq-~tG~~~~~  315 (513)
T KOG0254|consen  243 EEAKRSLKRLRGLSPEDVEVELELLKIKLLVEAEVAEGKASWGELFS--PKVRKRLI----IGLLLQLFQQ-LTGINYVF  315 (513)
T ss_pred             HHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhhhcccccccHHHhcC--cchHHHHH----HHHHHHHHHH-HhCCceEE
Confidence            222222111111   00000000000  0000000000111111111  01112121    1111111112 22222222


Q ss_pred             EeeccccccccccccccccchhhhhhHHHHHHHHHhhhhhhhhccccccCCCCCCCchhHHHHHHHHHHHHHHHHHHHHH
Q 008096          342 LQQAKSMDRHLTKSFQIPAGSMSVFTMVSMLSTIALYDRIIIPVARKFTGLDRGITFLHRMGIGFVISVLATLVAGFVEM  421 (577)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ig~~~~~l~~~~~~~~~~  421 (577)
                      .+....++..   +.+.+.........+..++...+...    +.||.+||+.       ++.|...+.+++++++....
T Consensus       316 ~Y~~~if~~~---g~~~~~~~~~~~~~~v~~~~t~~~~~----lvd~~gRr~l-------ll~s~~~m~~~~~~~~~~~~  381 (513)
T KOG0254|consen  316 YYSTTIFKSA---GLKSDTFLASIILGVVNFLGTLVATY----LVDRFGRRKL-------LLFGAAGMSICLVILAVVGV  381 (513)
T ss_pred             eehHHHHHhc---CCCCchHHHHHHHHHHHHHHHHHHHH----HHHHhccHHH-------HHHhHHHHHHHHHHHHHHHH
Confidence            2222222211   11111112222222222223233233    4555555443       78888888888887776541


Q ss_pred             HHHHHHHhcCCCCCCCccccchhhHHHHHHHHHHHHHHHHhhhhhhhhhcccCcccHHHHHHHHHHHHhHHHHHHHHHHH
Q 008096          422 KRKQAALAHGLVDKPHIIIPISVLWLVPQYSLHGIAEAFMSVGHLEFLYDQAPESMRSTATALFWTANSIGNYVSTLLVT  501 (577)
Q Consensus       422 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~gi~~~~~~~~~~~~v~~~~P~~~rg~~~gi~~~~~~lg~~l~~~i~~  501 (577)
                      .    ...+.     +......+..+....++.........+..|.+..|..|.+.|+++.++...++++.+++......
T Consensus       382 ~----~~~~~-----~~~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~r~~~~s~~~~~n~~~~~~v~~~~~  452 (513)
T KOG0254|consen  382 F----ALYYP-----NSSKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRLRSKGASLAVAVNWLWNFLISFFFP  452 (513)
T ss_pred             H----hccCC-----CcccchhHHHHHHHHHHHHHHhcccccchhhhhhccCcHhHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence            1    11100     00112334444455555666677788889999999999999999999999999999988877766


Q ss_pred             HHhhhcCCCCCCCCCCCCCCCcchhhHHHHHHHHHHHHHHH-HHhhhhhccccccccccccC
Q 008096          502 LVHKFSAGPNGSNWLPDNNLNKGKLEYFYWLITLLQVVNVI-YYFFCAKIYTFKPIQMHQKG  562 (577)
Q Consensus       502 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~~~~~~~~~~~~~~~  562 (577)
                      ...+..+                 ....|..+++...+... +.+++.||+|+++.||.++.
T Consensus       453 ~~~~~~~-----------------~~~~f~~f~~~~~~~~~~fv~~~~pETkg~sleei~~~  497 (513)
T KOG0254|consen  453 FITEALG-----------------IGGTFGYFGGICLLSLIIFVFFFVPETKGLTLEEINEL  497 (513)
T ss_pred             HHHHhcc-----------------ccchHHHHHHHHHHHHHHHheEEcccCCCCcHHHHHHH
Confidence            6543321                 12235666666666666 78888999999999987643

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.89  E-value=1.4e-21  Score=206.71  Aligned_cols=397  Identities=12%  Similarity=0.089  Sum_probs=243.0

Q ss_pred             HHHHHHHHhHhhhhchhhhhhhhhhccchhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCcccccccchhHHHHH
Q 008096           55 AANTLTNFGGTGSLTPLIGAFVADTYAGRFWTITVASIIYQIGMFSLTLSAILPQLRPPPCQGDQVCKEADTGQLAILYA  134 (577)
Q Consensus        55 ~~~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (577)
                      .+.+++.+.+++++++...|+++||+ |||..+.++.++..++.+++.++...+                   +...+++
T Consensus        62 wS~~vs~f~iG~~~Gs~~~~~la~~~-GRK~~l~~~~~l~~~~~~~~~~s~~~~-------------------~~e~li~  121 (485)
T KOG0569|consen   62 WSLIVSIFFIGGMIGSFSSGLLADRF-GRKNALLLSNLLAVLAALLMGLSKSAP-------------------SFEMLIL  121 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhh-cchHHHHHHHHHHHHHHHHHHHHHHhh-------------------hHHHHHH
Confidence            45677888999999999999999999 999999999999999988888876222                   6888999


Q ss_pred             HHHHHHhccCCcccchhhhhhccCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHHHHH--hhcccccchhhhHHHHHHHH
Q 008096          135 SLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAVLVAVTVLV--YIQDNVGWNWGLGIPTVAMF  212 (577)
Q Consensus       135 ~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~lg~~i~~--~l~~~~gw~~~f~~~~~~~~  212 (577)
                      +|++.|+..|......+-++.|..|++-      ||..-.....+..+|..+|..++.  .+.+.-.|.+.+.+..+.++
T Consensus       122 GR~i~Gl~~gl~~~~~pmyl~E~sP~~~------RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~~i~~~  195 (485)
T KOG0569|consen  122 GRLIVGLACGLSTGLVPMYLTEISPKNL------RGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFPLIPAL  195 (485)
T ss_pred             HHHHHHHHhHHHHHHHHHHHhhcChhhh------ccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHHHHHHH
Confidence            9999999999999999999999999998      999999999999999999976653  34455569999888888777


Q ss_pred             HHHHHHHHccccccccCCCCChhhHHHHHHHHHHhhccccCCCCCccccc-ccchhhhhhcCCcccccc-cchhhhhh-h
Q 008096          213 LSIIAFVFGYPLYRNLNPAGSPFVRLMQVCVAAFRKRNLDMVSDPNVLYQ-NEELDASICLDGKLLHTK-HMKFLDKA-A  289 (577)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~-~~~~l~~~-~  289 (577)
                      +.++.+.++                                ||||++++. .++.++++...+..+-.+ ..+..+.. .
T Consensus       196 ~~l~~l~~~--------------------------------PESPk~Ll~~k~~~~~A~~sl~~y~G~~~~~~~~e~~~~  243 (485)
T KOG0569|consen  196 LQLALLPFL--------------------------------PESPKYLLIKKGDEEEARKALKFYRGKEDVEAEIEEMLR  243 (485)
T ss_pred             HHHHHHhcC--------------------------------CCCcchHHHHcCCHHHHHHHHHHHhCCCcchhHHHHHHH
Confidence            766665543                                344444444 333333433333332111 11111100 0


Q ss_pred             -hccccccCCCCC-cccccchhhhhhhhhhhhhhhHHHHHHHHHHHhhccceeEEeeccccccccccccccccchhhhh-
Q 008096          290 -IVTEEDDIKSPN-LWRLNTVHRVEELKSVIRMGPIWASGILLITAYAQQGTFSLQQAKSMDRHLTKSFQIPAGSMSVF-  366 (577)
Q Consensus       290 -~~~~~~~~~~~~-~~~~~~~~~~~~~k~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  366 (577)
                       ..++..+.++.. .++.++.+  ..|+...     ....+.+.+.+........ ....+-.+.  ++....+...+. 
T Consensus       244 e~~~~~~~~~~~~sl~~~~~~~--~lR~~~~-----i~~~v~~~qq~sGi~ai~~-Yst~i~~~a--G~~~~~a~~an~~  313 (485)
T KOG0569|consen  244 EIEEEELEKKKQISLRQLLKNP--TLRRPLL-----IGIVVSFAQQFSGINAIFF-YSTSIFKTA--GFTPEEAQYANLG  313 (485)
T ss_pred             HHHHhccccccCCcHHHHhcCc--chhHHHH-----HHHHHHHHHHhcCcceeHH-HHHHHHHHc--CCCHHHHHHHHHH
Confidence             000000111111 11111111  1112111     1111122222221111100 010111111  222222222222 


Q ss_pred             hHHHHHHHHHhhhhhhhhccccccCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccccchhhH
Q 008096          367 TMVSMLSTIALYDRIIIPVARKFTGLDRGITFLHRMGIGFVISVLATLVAGFVEMKRKQAALAHGLVDKPHIIIPISVLW  446 (577)
Q Consensus       367 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ig~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  446 (577)
                      .....++...+.    ..+.||.+||+.       ++++..++.+..+++.......    .+-+        ....+..
T Consensus       314 ~g~v~~~~t~~~----~~lid~~gRRpL-------ll~~~~~~~~~~~~~~~~~~l~----~~~~--------~~~~y~~  370 (485)
T KOG0569|consen  314 IGIVNLLSTLVS----PFLIDRLGRRPL-------LLISLSLMAVALLLMSIALFLS----NSFG--------SWLSYLC  370 (485)
T ss_pred             HHHHHHHHHHHH----HHHHHhcCCcHH-------HHHHHHHHHHHHHHHHHHHHHH----HHhh--------hHHHHHH
Confidence            122222222222    235566665543       7777777777666555443110    0000        0011112


Q ss_pred             HHHHHHHHHHHHHHHhhhhhhhhhcccCcccHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCCcchh
Q 008096          447 LVPQYSLHGIAEAFMSVGHLEFLYDQAPESMRSTATALFWTANSIGNYVSTLLVTLVHKFSAGPNGSNWLPDNNLNKGKL  526 (577)
Q Consensus       447 l~~~~~l~gi~~~~~~~~~~~~v~~~~P~~~rg~~~gi~~~~~~lg~~l~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~  526 (577)
                      +...+++.........|..+-+..|.+|++.|+.++++...++++.+++.....+.+.+..+                  
T Consensus       371 i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g------------------  432 (485)
T KOG0569|consen  371 IAAIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIG------------------  432 (485)
T ss_pred             HHHHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc------------------
Confidence            22233333334556688899999999999999999999999999999999999999877652                  


Q ss_pred             hHHHHHHHHHHHHHHHHHhhhhhccccccccccc
Q 008096          527 EYFYWLITLLQVVNVIYYFFCAKIYTFKPIQMHQ  560 (577)
Q Consensus       527 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  560 (577)
                      .++|..+.+..+++.++.+...||+|+|+.++..
T Consensus       433 ~~~filF~i~~~~~~i~~~~~lPETkgr~~~eI~  466 (485)
T KOG0569|consen  433 PYVFILFVIPLAIFLIYLYRYLPETKGRTPYEII  466 (485)
T ss_pred             chhhHHHHHHHHHHHHHHHHhCcccCCCCHHHHH
Confidence            2558889999999999999999999999877654

>PRK11043 putative transporter; Provisional

Probab=99.89  E-value=1.1e-20  Score=200.71  Aligned_cols=148  Identities=15%  Similarity=0.193  Sum_probs=130.6

Q ss_pred             HHHhcCCChHHHHHHHHHHhHhhhhchhhhhhhhhhccchhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCcccc
Q 008096           44 LTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADTYAGRFWTITVASIIYQIGMFSLTLSAILPQLRPPPCQGDQVCKE  123 (577)
Q Consensus        44 l~~~lg~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  123 (577)
                      +++++|.|.++.+++.+++.++..+++++.|+++||+ |||+.+..+.++..++.+.++++.                  
T Consensus        32 i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~~~~~------------------   92 (401)
T PRK11043         32 IQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRY-GRKPVLLAGLSLFALGSLGMLWVE------------------   92 (401)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhc-CCcHHHHHHHHHHHHHHHHHHHhc------------------
Confidence            6689999999999999999999999999999999998 999999999999988888888765                  


Q ss_pred             cccchhHHHHHHHHHHHhccCCcccchhhhhhccCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhcccccchhh
Q 008096          124 ADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAVLVAVTVLVYIQDNVGWNWG  203 (577)
Q Consensus       124 ~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~lg~~i~~~l~~~~gw~~~  203 (577)
                          +.+.+++.|+++|++.+...+...+++.|.+|+++      +++.++.......+|..++|.+++++.+.+||++.
T Consensus        93 ----~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~  162 (401)
T PRK11043         93 ----SAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQK------ANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAI  162 (401)
T ss_pred             ----CHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHH
Confidence                67788999999999998888888899999999776      77888888888899999999999999988999999


Q ss_pred             hHHHHHHHHHHHHHHHH
Q 008096          204 LGIPTVAMFLSIIAFVF  220 (577)
Q Consensus       204 f~~~~~~~~~~~~~~~~  220 (577)
                      |++..+..++..+....
T Consensus       163 ~~~~~~~~~~~~~~~~~  179 (401)
T PRK11043        163 FATLFAITLLLILPTLR  179 (401)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            98887766655544443

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.89  E-value=1.4e-21  Score=204.25  Aligned_cols=154  Identities=15%  Similarity=0.186  Sum_probs=135.3

Q ss_pred             HHHHHHHHHhcCCChHHHHHHHHHHhHhhhhchhhhhhhhhhccchhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCC
Q 008096           38 ANMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADTYAGRFWTITVASIIYQIGMFSLTLSAILPQLRPPPCQG  117 (577)
Q Consensus        38 ~~l~~~l~~~lg~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  117 (577)
                      ....+++++++|+|.++.+++.+.+.++..++.++.|+++||+ |||+.+.++.++..++.++++++.            
T Consensus        15 ~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~~~~~------------   81 (379)
T TIGR00881        15 ALAMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRS-NPRVFLPIGLILCAIVNLFFGFST------------   81 (379)
T ss_pred             hhhhHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhh-CCeehhHHHHHHHHHHHHHHHHhh------------
Confidence            3344578889999999999999999999999999999999998 999999999999999999998876            


Q ss_pred             CCcccccccchhHHHHHHHHHHHhccCCcccchhhhhhccCCCCCchhhhhhhhhhhHHHHHHHHHHHHHH-HHHHhhcc
Q 008096          118 DQVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAVLVAV-TVLVYIQD  196 (577)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~lg~-~i~~~l~~  196 (577)
                                +.+.+++.|++.|++.+...+...+++.|++|+++      |+++.++.+.+.++|..++| ++++.+.+
T Consensus        82 ----------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~~~~~~  145 (379)
T TIGR00881        82 ----------SLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSE------RGTWVSFWNCSHNVGGGLLPPLVLFGIAE  145 (379)
T ss_pred             ----------hHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhh------heeeEeehhccchhHHHHHHHHHHHHHHh
Confidence                      67889999999999999999999999999999877      99999999999999999999 56777777


Q ss_pred             cccchhhhHHHHHHHHHHHHHHHH
Q 008096          197 NVGWNWGLGIPTVAMFLSIIAFVF  220 (577)
Q Consensus       197 ~~gw~~~f~~~~~~~~~~~~~~~~  220 (577)
                      ..+|++.|++.++..++..+....
T Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~  169 (379)
T TIGR00881       146 LYSWHWVFIVPGIIAIIVSLICFL  169 (379)
T ss_pred             cCCchhHHHHHHHHHHHHHHHHhe
Confidence            789999998877765554444333

>PRK15075 citrate-proton symporter; Provisional

Probab=99.89  E-value=9.6e-21  Score=203.40  Aligned_cols=172  Identities=13%  Similarity=0.091  Sum_probs=125.6

Q ss_pred             cceehHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHH-HHHhHh-----hhhchhhhhhhhhhccchhHHHHH
Q 008096           16 IITMPFIFANEVCEKLAVVGFHANMISYLTTQLHMPLTKAANTL-TNFGGT-----GSLTPLIGAFVADTYAGRFWTITV   89 (577)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~lg~s~~~~~~i~-~~~~~~-----~~~~~~~~G~laDr~~Grk~~~~~   89 (577)
                      |+.........+++.+... ......+.+.++++.+..+.+... +...++     ..+++++.|+++||+ |||+.+..
T Consensus        14 ~~~~~~~~~~~~~~~~d~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~-Grr~~l~~   91 (434)
T PRK15075         14 ARAILRVTSGNFLEMFDFF-LFGFYATAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRV-GRRKGLIV   91 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhh-chHHHHHH
Confidence            3444444445555544443 455556678889998887765443 322222     236788999999998 99999999


Q ss_pred             HHHHHHHHHHHHHHhhhcCCCCCCCCCCCCcccccccchhHHHHHHHHHHHhccCCcccchhhhhhccCCCCCchhhhhh
Q 008096           90 ASIIYQIGMFSLTLSAILPQLRPPPCQGDQVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKT  169 (577)
Q Consensus        90 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r  169 (577)
                      +.+++.++.++++++.++...              .......+++.|+++|++.+...++..++++|++|+++      |
T Consensus        92 ~~~~~~~~~~l~~~~~~~~~~--------------~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~------r  151 (434)
T PRK15075         92 TLSIMASGTLLIAFVPGYATI--------------GLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGR------K  151 (434)
T ss_pred             HHHHHHHHHHHHHhCCcHHHH--------------HHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCccc------c
Confidence            999999999999987622110              00001246889999999999999999999999999988      9


Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHhhc--------ccccchhhhHHHHH
Q 008096          170 WKYFNWYYFVMGAAVLVAVTVLVYIQ--------DNVGWNWGLGIPTV  209 (577)
Q Consensus       170 ~~~~~~~~~~~~ig~~lg~~i~~~l~--------~~~gw~~~f~~~~~  209 (577)
                      +++.+++..+.++|..+|+.+++.+.        +.+|||++|++..+
T Consensus       152 g~~~~~~~~~~~~g~~~g~~~g~~l~~~~~~~~~~~~gWr~~f~~~~~  199 (434)
T PRK15075        152 GFYTSWQSASQQVAVVFAALLGYLLNQWLSPAQMAEWGWRIPFLIGCL  199 (434)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHH
Confidence            99999988888888888887776652        46899999987544

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.89  E-value=2e-20  Score=198.09  Aligned_cols=170  Identities=14%  Similarity=0.113  Sum_probs=144.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhHhhhhchhhhhhhhhhccchhHHHHHHHHHHHHHHHH
Q 008096           21 FIFANEVCEKLAVVGFHANMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADTYAGRFWTITVASIIYQIGMFS  100 (577)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~l~~~l~~~lg~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~i~~~~  100 (577)
                      ..+...+....+.....+.+|.+ .+++|.|.++.+++.+.+.++..+++++.|+++||+ |||+.+..+.++..++.+.
T Consensus         7 ~~~~~~~~~~~~~~~~~~~lp~~-~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~-g~r~~l~~~~~~~~i~~~~   84 (392)
T PRK10473          7 CSFALVLLYPAGIDMYLVGLPRI-AADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRS-GRKPVAIPGAALFIIASLL   84 (392)
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHH-HHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHh-CChHHHHHHHHHHHHHHHH
Confidence            34445556666666666666655 567999999999999999999999999999999998 9999999999999999888


Q ss_pred             HHHhhhcCCCCCCCCCCCCcccccccchhHHHHHHHHHHHhccCCcccchhhhhhccCCCCCchhhhhhhhhhhHHHHHH
Q 008096          101 LTLSAILPQLRPPPCQGDQVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVM  180 (577)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~  180 (577)
                      +.++.                      +.+.+++.|+++|++.+...+...+++.|.+|+++      |+++.++.+...
T Consensus        85 ~~~~~----------------------~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~~~~~  136 (392)
T PRK10473         85 CSLAE----------------------TSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRR------RAKVLSLLNGIT  136 (392)
T ss_pred             HHHhC----------------------cHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHH------HHHHHHHHHHHH
Confidence            88755                      56778899999999999999999999999999877      999999999999


Q ss_pred             HHHHHHHHHHHHhhcccccchhhhHHHHHHHHHHHHHHHH
Q 008096          181 GAAVLVAVTVLVYIQDNVGWNWGLGIPTVAMFLSIIAFVF  220 (577)
Q Consensus       181 ~ig~~lg~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~  220 (577)
                      ++|..++|.+++.+.+..||++.|++.++..++..++...
T Consensus       137 ~i~~~~~~~i~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~  176 (392)
T PRK10473        137 CIIPVLAPVLGHLIMLKFPWQSLFYTMAAMGILVLLLSLF  176 (392)
T ss_pred             HHHHHHHHHHHHHHHhCcChHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999998888889999998887766555444433

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.89  E-value=1.5e-20  Score=198.39  Aligned_cols=343  Identities=12%  Similarity=-0.030  Sum_probs=216.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhHhhhhchhhhhhhhhhccchhHHH----HHHHHHHHH
Q 008096           21 FIFANEVCEKLAVVGFHANMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADTYAGRFWTI----TVASIIYQI   96 (577)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~l~~~l~~~lg~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~----~~~~~~~~i   96 (577)
                      .+....++...++-...+++|.|++ ++|+|..+.+++.+.+.+...+.+++.|.++||+ ||++..    ..+..+..+
T Consensus         8 ~l~~~~~~~~~~~~~~~p~l~~~l~-~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~-~~~~~~~~~~~~~~~l~~~   85 (382)
T TIGR00902         8 WLALGFFGYFCAYGIFLPFFPAWLK-GIGLGEEMIGLLIGAALIARFAGGLFFAPLIKDA-NHIIIALRLLALASAIFAA   85 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHHHHHH
Confidence            3444566666666777888999995 6899999999999999999999999999999998 875433    222222221


Q ss_pred             HHHHHHHhhhcCCCCCCCCCCCCcccccccchhHHHHHHHHHHHhccCCcccchhhhhhccCCCCCchhhhhhhhhhhHH
Q 008096           97 GMFSLTLSAILPQLRPPPCQGDQVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWY  176 (577)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  176 (577)
                        ..+..++                      +.+.+++.|++++.+.+...|...++..+.  .++      |++.++..
T Consensus        86 --~~~~~~~----------------------~~~~l~~~~~l~~~~~~~~~p~~~al~~~~--~~~------~~~~~g~~  133 (382)
T TIGR00902        86 --AFSAGAH----------------------NAWLLFIAIGLFALFFSAGMPIGDALANTW--QKQ------FGLDYGKV  133 (382)
T ss_pred             --HHHHhhh----------------------hHHHHHHHHHHHHHHHccchhHHHHHHHHH--HHH------cCCCccHH
Confidence              1222333                      678888999999999988889988887553  233      78889999


Q ss_pred             HHHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHHHHHHHHHccccccccCCCCChhhHHHHHHHHHHhhccccCCCC
Q 008096          177 YFVMGAAVLVAVTVLVYIQDNVGWNWGLGIPTVAMFLSIIAFVFGYPLYRNLNPAGSPFVRLMQVCVAAFRKRNLDMVSD  256 (577)
Q Consensus       177 ~~~~~ig~~lg~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (577)
                      ....++|.+++|.+++++.+.+|||..|++......+.++ .....++.++++ ++++  +                 + 
T Consensus       134 ~~~~slG~~~g~~l~g~l~~~~g~~~~f~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~--~-----------------~-  191 (382)
T TIGR00902       134 RLIGSAAFIIGSALFGGLIGMFDEQNILAILTAGLAFMLI-GFLIKPTIPPKD-AIPE--D-----------------E-  191 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHH-HHHcCCCCCCCc-cccc--c-----------------c-
Confidence            9999999999999999999999999998876554332222 222222110000 0000  0                 0 


Q ss_pred             CcccccccchhhhhhcCCcccccccchhhhhhhhccccccCCCCCcccccchhhhhhhhhhhhhh-hHHHHHHHHHHHhh
Q 008096          257 PNVLYQNEELDASICLDGKLLHTKHMKFLDKAAIVTEEDDIKSPNLWRLNTVHRVEELKSVIRMG-PIWASGILLITAYA  335 (577)
Q Consensus       257 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~-~l~~~~~~~~~~~~  335 (577)
                      +                                           ..++  ......+.|+..... ..++........+.
T Consensus       192 ~-------------------------------------------~~~~--~~~~~l~~~~~~~~l~~~~l~~~~~~~~~~  226 (382)
T TIGR00902       192 S-------------------------------------------QGDS--AFIALLKNPMNLRFLAAVCLIQGAHAAYYG  226 (382)
T ss_pred             c-------------------------------------------ccch--hHHHHHcChHHHHHHHHHHHHHHHHHHHHH
Confidence            0                                           0000  000011112221111 11111222222221


Q ss_pred             ccceeEEeeccccccccccccccccchhhhhhHHHHHHHHHhhhhhhhhccccccCCCCCCCchhHHHHHHHHHHHHHHH
Q 008096          336 QQGTFSLQQAKSMDRHLTKSFQIPAGSMSVFTMVSMLSTIALYDRIIIPVARKFTGLDRGITFLHRMGIGFVISVLATLV  415 (577)
Q Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ig~~~~~l~~~~  415 (577)
                      ..+.+       .+. .+ ......+.......+..++..++    .+++.||++.       .+.+.+|.++..+...+
T Consensus       227 ~~~~~-------l~~-~g-~s~~~~g~l~~~~~~~~i~~~~~----~~~l~~r~g~-------~~~l~~~~~~~~~~~~~  286 (382)
T TIGR00902       227 FSAIY-------WQA-AG-ISASATGLLWGIGVLAEIIIFAF----SNKLFQNCSA-------RDLLLISAIACVGRWAI  286 (382)
T ss_pred             HHHHH-------HHH-CC-CCHhHHHHHHHHHHHHHHHHHHH----hHHHHhhCCH-------HHHHHHHHHHHHHHHHH
Confidence            11111       111 11 00011222233333333444333    4456666543       33377888888888777


Q ss_pred             HHHHHHHHHHHHHhcCCCCCCCccccchhhHHHHHHHHHHHHHHHHhhhhhhhhhcccCcccHHHHHHHHH-HHHhHHHH
Q 008096          416 AGFVEMKRKQAALAHGLVDKPHIIIPISVLWLVPQYSLHGIAEAFMSVGHLEFLYDQAPESMRSTATALFW-TANSIGNY  494 (577)
Q Consensus       416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~gi~~~~~~~~~~~~v~~~~P~~~rg~~~gi~~-~~~~lg~~  494 (577)
                      ....+                      +++.++...+++++..+...+....++.+. |++.|++++|+++ +..++|..
T Consensus       287 ~~~~~----------------------~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~  343 (382)
T TIGR00902       287 IGAIE----------------------AFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIA  343 (382)
T ss_pred             HHhHh----------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHH
Confidence            76654                      666677778999999999999999999988 9999999999987 56889999


Q ss_pred             HHHHHHHHHhhhc
Q 008096          495 VSTLLVTLVHKFS  507 (577)
Q Consensus       495 l~~~i~~~v~~~~  507 (577)
                      +++.+.|.+.+..
T Consensus       344 ~g~~~~G~l~~~~  356 (382)
T TIGR00902       344 IFTAFAGFIYPTL  356 (382)
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999987754

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=99.88  E-value=5.9e-21  Score=200.65  Aligned_cols=159  Identities=16%  Similarity=0.186  Sum_probs=139.7

Q ss_pred             HHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhHhhhhchhhhhhhhhhccchhHHHHHHHHHHHHHHHHHHHhhhcCCCC
Q 008096           32 AVVGFHANMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADTYAGRFWTITVASIIYQIGMFSLTLSAILPQLR  111 (577)
Q Consensus        32 ~~~~~~~~l~~~l~~~lg~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~~~  111 (577)
                      +.....+.+|.+.+ ++|+|..+.+++.+.+.++..+++++.|+++||+ |||+.+..+.++..++...+.++.      
T Consensus         6 ~~~~~~p~~~~~~~-~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~~~i~~~~~~~~~------   77 (377)
T PRK11102          6 AIDMYLPALPVIAA-DFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSF-GRKPVILGGTLVFALAAVACALAQ------   77 (377)
T ss_pred             HHHHHhccHHHHHH-HhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhc-CChHHHHHHHHHHHHHHHHHHHHc------
Confidence            34455577777764 6899999999999999999999999999999998 999999999999999999888765      


Q ss_pred             CCCCCCCCcccccccchhHHHHHHHHHHHhccCCcccchhhhhhccCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHHHH
Q 008096          112 PPPCQGDQVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAVLVAVTVL  191 (577)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~lg~~i~  191 (577)
                                      +.+.+++.|+++|++.+...+...+++.|.+|+++      |++++++.+....+|..++|.++
T Consensus        78 ----------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~~~  135 (377)
T PRK11102         78 ----------------TIDQLIYMRFLHGLAAAAASVVINALMRDMFPKEE------FSRMMSFVTLVMTIAPLLAPIIG  135 (377)
T ss_pred             ----------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH------HHHHHHHHHHHHHHHHHHHHHHH
Confidence                            67788999999999999999999999999999877      99999999999999999999999


Q ss_pred             HhhcccccchhhhHHHHHHHHHHHHHHHH
Q 008096          192 VYIQDNVGWNWGLGIPTVAMFLSIIAFVF  220 (577)
Q Consensus       192 ~~l~~~~gw~~~f~~~~~~~~~~~~~~~~  220 (577)
                      +++.+..||++.|++.++..++..+....
T Consensus       136 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (377)
T PRK11102        136 GWLLVWFSWHAIFWVLALAAILAAALVFF  164 (377)
T ss_pred             HHHHHHcChHHHHHHHHHHHHHHHHHHHH
Confidence            99998889999998877766555444433

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.88  E-value=4e-20  Score=198.39  Aligned_cols=355  Identities=14%  Similarity=0.129  Sum_probs=221.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhHhhhhchhhhhhhhhhc---cchh-HHHHHHHHHHHHHHHHH
Q 008096           26 EVCEKLAVVGFHANMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADTY---AGRF-WTITVASIIYQIGMFSL  101 (577)
Q Consensus        26 ~~~~~~~~~~~~~~l~~~l~~~lg~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~---~Grk-~~~~~~~~~~~i~~~~~  101 (577)
                      .+..++....+.++++.|+++++|+|..++|++.++..+..++..|+.|+++||.   +||| +.+..+.+..+++.+++
T Consensus         8 ~~~~~~~~~~~~~~l~~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~   87 (437)
T TIGR00792         8 DFGNNFIFAIVSTYLLFFYTDVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLL   87 (437)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHH
Confidence            4556666777778899999999999999999999999999999999999999983   2774 46777888888887777


Q ss_pred             HHhhhcCCCCCCCCCCCCcccccccchhHHHHHHHHHHHhccCCcccchhhhhhccCCC-CCchhhhhhhhhhhHHHHHH
Q 008096          102 TLSAILPQLRPPPCQGDQVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDE-TDPKQATKTWKYFNWYYFVM  180 (577)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~-~~~~~~~~r~~~~~~~~~~~  180 (577)
                      ....+.+.                ......+++.+++.+++.+...+...++..|+.++ ++      |++..++.+.+.
T Consensus        88 ~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~------R~~~~~~~~~~~  145 (437)
T TIGR00792        88 FTTPDFSA----------------TGKLVYAYITYILLGLFYSFVNIPYWSLVPAITLDPRE------RESLSTFRRFGA  145 (437)
T ss_pred             HhCCCCCc----------------chHHHHHHHHHHHHHHHHHhhcccHhhCcccccCCHHH------HHHHHHHHHHHH
Confidence            65431111                12355667778888999998888889999998754 34      888888888888


Q ss_pred             HHHHHHHHHHHHhhc-------ccccchhhhHHHHHHHHHHHHHHHHccccccccCCCCChhhHHHHHHHHHHhhccccC
Q 008096          181 GAAVLVAVTVLVYIQ-------DNVGWNWGLGIPTVAMFLSIIAFVFGYPLYRNLNPAGSPFVRLMQVCVAAFRKRNLDM  253 (577)
Q Consensus       181 ~ig~~lg~~i~~~l~-------~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (577)
                      ++|..+++.+.+.+.       +..||++.+.+.+++.++..+......++.+.+++..+                    
T Consensus       146 ~~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~e~~~~~~~~~--------------------  205 (437)
T TIGR00792       146 TLGGLLVAVIVLPLVSYFGGGDDKFGWFMFALVLALIGVVSLIICFFGTKERYSEIPKNI--------------------  205 (437)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCcccccHHHHHHHHHHHHHHHHHHHHcCCEecCCCCCccc--------------------
Confidence            888877776655443       24589998887777665554444333332110000000                    


Q ss_pred             CCCCcccccccchhhhhhcCCcccccccchhhhhhhhccccccCCCCCcccccchhhhhhhhhhhhhhhH-HHHHHHHHH
Q 008096          254 VSDPNVLYQNEELDASICLDGKLLHTKHMKFLDKAAIVTEEDDIKSPNLWRLNTVHRVEELKSVIRMGPI-WASGILLIT  332 (577)
Q Consensus       254 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~l-~~~~~~~~~  332 (577)
                        .+                 +      .+..+               .+     +...+.|.+...... ++.......
T Consensus       206 --~~-----------------~------~~~~~---------------~~-----~~l~~~~~~~~~~~~~~~~~~~~~~  240 (437)
T TIGR00792       206 --EK-----------------K------LSLKQ---------------IF-----KALFKNDQLLILCLAYLFYNLAFNI  240 (437)
T ss_pred             --cc-----------------C------CCHHH---------------HH-----HHHhCCHHHHHHHHHHHHHHHHHHH
Confidence              00                 0      00000               00     001111222111111 111111111


Q ss_pred             HhhccceeEEeeccccccccccccccccchhhhhhHHHHHHHHHhhhhhhhhccccccCCCCCCCchhHHHHHHHHHHHH
Q 008096          333 AYAQQGTFSLQQAKSMDRHLTKSFQIPAGSMSVFTMVSMLSTIALYDRIIIPVARKFTGLDRGITFLHRMGIGFVISVLA  412 (577)
Q Consensus       333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ig~~~~~l~  412 (577)
                       ......++....      .  +.....+.+..+..+..+++.++.++    +.+|+++|+.       +.++.++.+++
T Consensus       241 -~~~~~~~~~~~~------~--~~~~~~~~~~~~~~i~~ii~~~~~~~----l~~r~g~~~~-------~~~~~~~~~~~  300 (437)
T TIGR00792       241 -KNGVQVYYFTYV------L--GDPELFSYMGSIAIVAGLIGVLLFPR----LVKKFGRKIL-------FAGGILLMVLG  300 (437)
T ss_pred             -HcchhheeEeee------c--CChHHHHHHHHHHHHHHHHHHHHHHH----HHHHhCcHHH-------HHHHHHHHHHH
Confidence             111112222111      1  10011223344445555666666544    6666654432       66677766666


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCCCCccccchhhHHHHHHHHHHHHHHHHhhhhhhhhhcccC-------cccHHHHHHHH
Q 008096          413 TLVAGFVEMKRKQAALAHGLVDKPHIIIPISVLWLVPQYSLHGIAEAFMSVGHLEFLYDQAP-------ESMRSTATALF  485 (577)
Q Consensus       413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~gi~~~~~~~~~~~~v~~~~P-------~~~rg~~~gi~  485 (577)
                      ++...+..                     .+.+..++..++.+++.+...+..++++.|..|       ++.+|++.|+.
T Consensus       301 ~~~~~~~~---------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~  359 (437)
T TIGR00792       301 YLIFFFAG---------------------SNLPLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVR  359 (437)
T ss_pred             HHHHHHcc---------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHH
Confidence            65544322                     133344555677888888888888888888765       56789999999


Q ss_pred             HHHHhHHHHHHHHHHHHHhhhcC
Q 008096          486 WTANSIGNYVSTLLVTLVHKFSA  508 (577)
Q Consensus       486 ~~~~~lg~~l~~~i~~~v~~~~~  508 (577)
                      ++...+|..+++.+.+.+.+..+
T Consensus       360 ~~~~~~g~~lg~~i~g~ll~~~G  382 (437)
T TIGR00792       360 TFVRKLGQALAGFLVGLILGIIG  382 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcC
Confidence            99999999999999999887653

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>TIGR00889 2A0110 nucleoside transporter

Probab=99.88  E-value=4.4e-20  Score=197.19  Aligned_cols=393  Identities=12%  Similarity=0.064  Sum_probs=228.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhHhhhhchhhhhhhhhhccchhHHHHHHHHHHHHHHHH
Q 008096           21 FIFANEVCEKLAVVGFHANMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADTYAGRFWTITVASIIYQIGMFS  100 (577)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~l~~~l~~~lg~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~i~~~~  100 (577)
                      -+-...++...++-...++++.|+++++|+|..|.|++.+++.++..+++++.|+++||+.+||+++.++.++..++..+
T Consensus         6 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~~   85 (418)
T TIGR00889         6 KLKFMSFLQWFIWGSWLVTLGSYMSKTLHFSGAEIGWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALLLFF   85 (418)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence            34456666767767777999999999999999999999999999999999999999999823477888888877777777


Q ss_pred             HHHhhhcCCCCCCCCCCCCcccccccchhHHHHHHHHHHHhccCCcccchhhhhhccCCCC--CchhhhhhhhhhhHHHH
Q 008096          101 LTLSAILPQLRPPPCQGDQVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDET--DPKQATKTWKYFNWYYF  178 (577)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~--~~~~~~~r~~~~~~~~~  178 (577)
                      +.+..                      +.+.+++.|++.+++.+...+...++..+...+.  +..+..+|.+.+|    
T Consensus        86 ~~~~~----------------------~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~r~~G----  139 (418)
T TIGR00889        86 AAQVT----------------------TPAGMFPVLLANSLAYMPTIALTNSISYANLPQAGLDVVTDFPPIRVMG----  139 (418)
T ss_pred             HHHhc----------------------CHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhhcCCCchhcCCCeeeeh----
Confidence            77654                      5677888888989987777776666543222110  0011112444444    


Q ss_pred             HHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHHHHHHHHHccccccccCCCC-ChhhHHHHHHHHHHhhccccCCCCC
Q 008096          179 VMGAAVLVAVTVLVYIQDNVGWNWGLGIPTVAMFLSIIAFVFGYPLYRNLNPAG-SPFVRLMQVCVAAFRKRNLDMVSDP  257 (577)
Q Consensus       179 ~~~ig~~lg~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  257 (577)
                        .+|.++||.+++.+.....|. +|++.++..++..++.. ..|+.++.++++ ++.++          +         
T Consensus       140 --~lG~~ig~~l~g~l~~~~~~~-~f~~~~~~~~~~~~~~~-~~~e~~~~~~~~~~~~~~----------~---------  196 (418)
T TIGR00889       140 --TIGFIAAMWAVSLLDIELSNI-QLYITAGSSALLGVFAL-TLPDIPVAKSTAKMSIKV----------M---------  196 (418)
T ss_pred             --hHHHHHHHHHHHHhcccchhH-HHHHHHHHHHHHHHHHh-cCCCCCCCccccccCHHH----------H---------
Confidence              478899999988884433354 45555555444443322 223211100000 00000          0         


Q ss_pred             cccccccchhhhhhcCCcccccccchhhhhhhhccccccCCCCCcccccchhhhhhhhhhhhhhhH-HHHHHHHHHHhhc
Q 008096          258 NVLYQNEELDASICLDGKLLHTKHMKFLDKAAIVTEEDDIKSPNLWRLNTVHRVEELKSVIRMGPI-WASGILLITAYAQ  336 (577)
Q Consensus       258 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~l-~~~~~~~~~~~~~  336 (577)
                                                                 .++.   .+...+.+........ ++...........
T Consensus       197 -------------------------------------------~~~~---~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~  230 (418)
T TIGR00889       197 -------------------------------------------LGLD---AFILFKNKRMAIFFFFSMLLGAPLQITNIF  230 (418)
T ss_pred             -------------------------------------------hhhh---HHHHhcCCCeeeHHHHHHHHHhHHHHHHHh
Confidence                                                       0000   0000011111111111 1111111111110


Q ss_pred             cceeEEeeccccccccccccc-cccchhhhhhHHHHHHHHHhhhhhhhhccccccCCCCCCCchhHHHHHHHHHHHHHHH
Q 008096          337 QGTFSLQQAKSMDRHLTKSFQ-IPAGSMSVFTMVSMLSTIALYDRIIIPVARKFTGLDRGITFLHRMGIGFVISVLATLV  415 (577)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ig~~~~~l~~~~  415 (577)
                      .+.+ .... ..+.....++. ...+...+...+..++.....    .++.||+++|+.       +.++.++..+++.+
T Consensus       231 ~~~~-~~~~-g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~----g~l~dr~g~r~~-------l~~~~~~~~v~~~l  297 (418)
T TIGR00889       231 GNGF-LHEF-GRNPEFADSFVVKNASIWMSLSQFSEIFFILTI----PFFLKRFGIKKV-------MLLSLVAWALRFGF  297 (418)
T ss_pred             HHHH-HHHh-cccccccchhhhhhHHHHHHHHHHHHHHHHHHH----HHHHHHhCcHHH-------HHHHHHHHHHHHHH
Confidence            0111 0000 00000000000 012333444444445555554    446677655443       67777777666555


Q ss_pred             HHHHHHHHHHHHHhcCCCCCCCccccchhhHHHHHHHHHHHHHHHHhhhhhhhhhcccCcccHHHHHHHHH-HHHhHHHH
Q 008096          416 AGFVEMKRKQAALAHGLVDKPHIIIPISVLWLVPQYSLHGIAEAFMSVGHLEFLYDQAPESMRSTATALFW-TANSIGNY  494 (577)
Q Consensus       416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~gi~~~~~~~~~~~~v~~~~P~~~rg~~~gi~~-~~~~lg~~  494 (577)
                      .....                  ....+++.+++..++.+++++...+....++.+.+|++.|++++|+.+ ....+|..
T Consensus       298 ~~~~~------------------~~~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~  359 (418)
T TIGR00889       298 FAYGD------------------PEYFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSL  359 (418)
T ss_pred             HHHcC------------------cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHH
Confidence            54322                  001123344556778889988888888999999999999999999997 67889999


Q ss_pred             HHHHHHHHHhhhcCCCCCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhhhhhc
Q 008096          495 VSTLLVTLVHKFSAGPNGSNWLPDNNLNKGKLEYFYWLITLLQVVNVIYYFFCAKI  550 (577)
Q Consensus       495 l~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  550 (577)
                      ++|.+.|.+.+..+..+           ..++...|...+++.+++.+.++++.++
T Consensus       360 iGp~l~G~l~~~~g~~~-----------~~~~~~~f~~~~~~~~i~~~l~~~~~~~  404 (418)
T TIGR00889       360 LGYILSGVMVEKMFAYG-----------TFDWQTMWLFFAGYIAILAVLFMIFFKY  404 (418)
T ss_pred             HHHHHHHHHHHHhcccc-----------CCchHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            99999999887652211           1124566778878877777777777664

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=99.88  E-value=1e-20  Score=192.44  Aligned_cols=391  Identities=12%  Similarity=0.048  Sum_probs=267.6

Q ss_pred             cCCCcceehHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhHhhhhchhhhhhhhhhccchhHHHHHHH
Q 008096           12 KKGGIITMPFIFANEVCEKLAVVGFHANMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADTYAGRFWTITVAS   91 (577)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~lg~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~   91 (577)
                      |+.++|+++. -...+..++..+.+.+.+..++.+++|+|+.|.+++...-.+.+.+..++-|.+.||| |-|++..++.
T Consensus         9 k~~~~~~L~~-S~~af~v~F~VW~l~s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drf-GgR~~~~~s~   86 (417)
T COG2223           9 KRIARRNLWL-STLAFDVGFMVWTLFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRF-GGRKWTILSM   86 (417)
T ss_pred             ccchhHHHHH-HHHHHHHHHHHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhccc-CchHHHHHHH
Confidence            3445555444 4466667788888999999999999999999999999999999999999999999998 9999999999


Q ss_pred             HHHHHHHHHHHHhhhcCCCCCCCCCCCCcccccccchhHHHHHHHHHHHhccCCcccchhhhhhccCCCCCchhhhhhhh
Q 008096           92 IIYQIGMFSLTLSAILPQLRPPPCQGDQVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWK  171 (577)
Q Consensus        92 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~  171 (577)
                      ++..+-.+..+++...|                   +++.+++.++++|++ |+.+++..++++++||+++      +|.
T Consensus        87 ~l~~IP~~~~~~a~~~~-------------------~~~~ll~~gll~G~~-GasFav~m~~~s~~fP~~~------qG~  140 (417)
T COG2223          87 LLLLIPCLGLAFAVTYP-------------------STWQLLVIGLLLGLA-GASFAVGMPNASFFFPKEK------QGL  140 (417)
T ss_pred             HHHHHHHHHHHHHccCC-------------------chHHHHHHHHHHhcc-cceehcccccccccCChhh------hhH
Confidence            99999999999987333                   357899999999999 5567899999999999988      999


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHhhccccc---chhhhHHHHHHHHHHHHHHHHccccccccCCCCChhhHHHHHHHHHHhh
Q 008096          172 YFNWYYFVMGAAVLVAVTVLVYIQDNVG---WNWGLGIPTVAMFLSIIAFVFGYPLYRNLNPAGSPFVRLMQVCVAAFRK  248 (577)
Q Consensus       172 ~~~~~~~~~~ig~~lg~~i~~~l~~~~g---w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (577)
                      +.|++. ..|+|..+...++.++....|   |+....+..+.+++..+..++..+..+..++..++...           
T Consensus       141 AlGI~g-~GN~G~av~q~~~P~v~~~~g~~~w~~~~~i~~~~l~v~~v~~~~~~~d~p~~r~~~~~~~~-----------  208 (417)
T COG2223         141 ALGIAG-AGNLGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVALAIAAVLAWLGMNDVPEHRASVKPQLP-----------  208 (417)
T ss_pred             HHHHhc-cccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhccccccch-----------
Confidence            999999 889999999999999988888   99999888888888777766655433222111110000           


Q ss_pred             ccccCCCCCcccccccchhhhhhcCCcccccccchhhhhhhhccccccCCCCCcccccchhhhh-hhhhhhhhhhHHHHH
Q 008096          249 RNLDMVSDPNVLYQNEELDASICLDGKLLHTKHMKFLDKAAIVTEEDDIKSPNLWRLNTVHRVE-ELKSVIRMGPIWASG  327 (577)
Q Consensus       249 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~k~~~~~~~l~~~~  327 (577)
                                     .                   .                       .+... +++.....+....++
T Consensus       209 ---------------~-------------------~-----------------------~~~v~~~~~~W~lsllY~~tF  231 (417)
T COG2223         209 ---------------A-------------------Q-----------------------LKAVFSNKDTWLLSLLYFATF  231 (417)
T ss_pred             ---------------h-------------------H-----------------------HHHHhcCcchHHHHHHHHHHH
Confidence                           0                   0                       00011 112222222222222


Q ss_pred             HHHHHHhhccceeEEeeccccccccccccccccchhhhhhHHHHHHHHHhhhhhhhhccccccCCCCCCCchhHHHHHHH
Q 008096          328 ILLITAYAQQGTFSLQQAKSMDRHLTKSFQIPAGSMSVFTMVSMLSTIALYDRIIIPVARKFTGLDRGITFLHRMGIGFV  407 (577)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ig~~  407 (577)
                      -.+...-.+.+.+       ...+++ -....++.+....++...+.-|+.++    +.||++.++.       +.+.+.
T Consensus       232 G~Fvgfs~~l~~~-------~~~~fg-~~~~~Ag~~a~~f~~~g~l~Rp~GG~----LsDR~Gg~rv-------~~~~f~  292 (417)
T COG2223         232 GGFVGFSAYLPMY-------LVTQFG-LSPVTAGLIAFLFPLIGALARPLGGW----LSDRIGGRRV-------TLAVFV  292 (417)
T ss_pred             HHHHHHHHHHHHH-------HHHhcC-CChhhHHHHHHHHHHHHHHHHhccch----hhhhccchhH-------HHHHHH
Confidence            2222222222222       222221 11233556667777777778888766    6666665543       666666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccccchhhHHHHHHHHHHHHHHHHhhhhhhhhhcccCcccHHHHHHHHHH
Q 008096          408 ISVLATLVAGFVEMKRKQAALAHGLVDKPHIIIPISVLWLVPQYSLHGIAEAFMSVGHLEFLYDQAPESMRSTATALFWT  487 (577)
Q Consensus       408 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~gi~~~~~~~~~~~~v~~~~P~~~rg~~~gi~~~  487 (577)
                      .++++..++....+               ....+.+.+..+..++..++..+.-+...+-++..+.|+ +-|...|+...
T Consensus       293 ~~~~~~~~l~~~~~---------------~~~~~~~~~~~~~~~l~l~~~~G~GnGsvfk~Ip~if~~-~~G~v~G~vga  356 (417)
T COG2223         293 GMALAAALLSLFLT---------------GFGHGGSFVVFVAVFLALFVFAGLGNGSVFKMIPVIFPK-ETGAVTGIVGA  356 (417)
T ss_pred             HHHHHHHHHHcccc---------------ccccCcchHHHHHHHHHHHHHhccCcchheeechHHHHh-hhhHHHHHHHH
Confidence            66666665554330               000112333444444555555555566666677777765 67899999999


Q ss_pred             HHhHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhhhhhc
Q 008096          488 ANSIGNYVSTLLVTLVHKFSAGPNGSNWLPDNNLNKGKLEYFYWLITLLQVVNVIYYFFCAKI  550 (577)
Q Consensus       488 ~~~lg~~l~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  550 (577)
                      .+++|++.-|...+...+.++                .+...|+.+....+++.+..+....+
T Consensus       357 ~G~lGGf~lp~~~g~~~~~tg----------------~~~~~f~~~~~~~~~a~v~~~~~y~r  403 (417)
T COG2223         357 IGGLGGFFLPLAFGVSLDLTG----------------SYTGAFMLLLAFYLVALVLTWALYAR  403 (417)
T ss_pred             hccccccchhHHHHHHHHhcc----------------cHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999998766552                23445777777777777777766543

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=99.88  E-value=4.5e-20  Score=196.04  Aligned_cols=179  Identities=12%  Similarity=-0.003  Sum_probs=135.3

Q ss_pred             ceehHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCCChHHHHHHHHHHhHhhhhchhhhhhhhhhccchhHHHHHHHHHHH
Q 008096           17 ITMPFIFANEVCEKLAVVGFHANMISYLTT-QLHMPLTKAANTLTNFGGTGSLTPLIGAFVADTYAGRFWTITVASIIYQ   95 (577)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~lg~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~   95 (577)
                      |++++ -...+...+..+.+.+.+...+.+ ++|+|.+|.+++.+++.+++.++.++.|++.||+ |.|+++.++.++..
T Consensus        34 r~l~~-s~~~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~-G~R~v~~~~~ll~~  111 (462)
T PRK15034         34 RNLWI-SVSCLLLAFCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIF-GGRRWTVFSTAILI  111 (462)
T ss_pred             HHHHH-HHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CChHHHHHHHHHHH
Confidence            43333 445566666666666766667655 8999999999999999999999999999999999 99999999999999


Q ss_pred             HHHHHHHHhhhcCCCCCCCCCCCCcccccccchhHHHHHHHHHHHhccCCcccchhhhhhccCCCCCchhhhhhhhhhhH
Q 008096           96 IGMFSLTLSAILPQLRPPPCQGDQVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNW  175 (577)
Q Consensus        96 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  175 (577)
                      +.++.++++..                 ....+++.+++.|++.|++ +...+.....++++||+++      |++++++
T Consensus       112 i~~~~~~~a~~-----------------~~~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~------rG~A~Gi  167 (462)
T PRK15034        112 IPCVWLGIAVQ-----------------NPNTPFGIFIVIALLCGFA-GANFASSMGNISFFFPKAK------QGSALGI  167 (462)
T ss_pred             HHHHHHHHHHc-----------------ccCCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhH------hHHHHHH
Confidence            99998887620                 0012788899999999998 7788999999999999888      9999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhc-----c-------------cccchhhhHHHHHHHHHHHHHHHHc
Q 008096          176 YYFVMGAAVLVAVTVLVYIQ-----D-------------NVGWNWGLGIPTVAMFLSIIAFVFG  221 (577)
Q Consensus       176 ~~~~~~ig~~lg~~i~~~l~-----~-------------~~gw~~~f~~~~~~~~~~~~~~~~~  221 (577)
                      +....++|..+++.+...+.     .             ..+|+.++++..+..++..+..++.
T Consensus       168 ~~g~G~~G~~l~~~l~p~~i~~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~  231 (462)
T PRK15034        168 NGGLGNLGVSVMQLVAPLVIFVPVFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSG  231 (462)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            86666666665555543322     2             2346666666666655555444443

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.88  E-value=5.7e-20  Score=194.90  Aligned_cols=387  Identities=9%  Similarity=-0.013  Sum_probs=230.9

Q ss_pred             eehHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhHhhhhchhhhhhhhhhccchhHHHHHHHHHHHHH
Q 008096           18 TMPFIFANEVCEKLAVVGFHANMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADTYAGRFWTITVASIIYQIG   97 (577)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~lg~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~i~   97 (577)
                      .++......++...+.....++++.|+++++|+|..+.+++.+.+.++..+++++.|+++||+ |||+.+..+....+++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~-grr~~~~~~~~~~~~~   81 (396)
T TIGR00882         3 NFWMFGLFFFLYFFIMSAYFPFFPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKL-GLKKHLLWIISGLLVL   81 (396)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHHH
Confidence            345556678888888888999999999999999999999999999999999999999999998 9999998877666554


Q ss_pred             HHHHHHhhhcCCCCCCCCCCCCcccccccchhHHHHHHHHHHHhccCCcccchhhhhhccCCCCCchhhhhhhhhhhHHH
Q 008096           98 MFSLTLSAILPQLRPPPCQGDQVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYY  177 (577)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~  177 (577)
                      ..........+.              .........++.+++.|++.+...|...++..|..++        ++..++..+
T Consensus        82 ~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--------~~~~~g~~~  139 (396)
T TIGR00882        82 FAPFFIYVFGPL--------------LQSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVSRN--------SNFEYGKAR  139 (396)
T ss_pred             HHHHHHHHhhhH--------------HHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhhhh--------cccccchhh
Confidence            433221110000              0001233456678888999888888888777664321        334567777


Q ss_pred             HHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHHHHHHHHHccccccccCCCCChhhHHHHHHHHHHhhccccCCCCC
Q 008096          178 FVMGAAVLVAVTVLVYIQDNVGWNWGLGIPTVAMFLSIIAFVFGYPLYRNLNPAGSPFVRLMQVCVAAFRKRNLDMVSDP  257 (577)
Q Consensus       178 ~~~~ig~~lg~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (577)
                      ...++|..+||.+++.+.+ ++|+.+|++.+.+.++..++.+...++.++    +++.++            +.+. +++
T Consensus       140 ~~~~~g~~~g~~~~g~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~------------~~~~-~~~  201 (396)
T TIGR00882       140 MFGCVGWALCASIAGILFS-IDPQIVFWLGSGFALILMLLLMFAKPKAPS----SATVAN------------ALGA-NAS  201 (396)
T ss_pred             hhcccHHHHHHHHHhhhhc-cCchHHHHHHHHHHHHHHHHHHHhCCCCch----hhhhhc------------cccc-ccC
Confidence            7889999999999998864 699999998887766655444433322111    000000            0000 000


Q ss_pred             cccccccchhhhhhcCCcccccccchhhhhhhhccccccCCCCCcccccchhhhhhhhhhhhhhhHHHH-HHHHHHHhhc
Q 008096          258 NVLYQNEELDASICLDGKLLHTKHMKFLDKAAIVTEEDDIKSPNLWRLNTVHRVEELKSVIRMGPIWAS-GILLITAYAQ  336 (577)
Q Consensus       258 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~l~~~-~~~~~~~~~~  336 (577)
                                            +                 .+..++     .+..+.|........... ...+.....+
T Consensus       202 ----------------------~-----------------~~~~~~-----~~~l~~~~~~~~~l~~~~~~~~~~~~~~~  237 (396)
T TIGR00882       202 ----------------------A-----------------FSLKLA-----LELFRQRKFWMFVLYVVGVACVYDVFDQQ  237 (396)
T ss_pred             ----------------------C-----------------CCHHHH-----HHHHcCCcHHHHHHHHHHHHHHHHHHHHH
Confidence                                  0                 000000     000011112111111111 1111111111


Q ss_pred             cceeEEeeccccc-cccccccccccchhhhhhHHHHHHHHHhhhhhhhhccccccCCCCCCCchhHHHHHHHHHHHHHHH
Q 008096          337 QGTFSLQQAKSMD-RHLTKSFQIPAGSMSVFTMVSMLSTIALYDRIIIPVARKFTGLDRGITFLHRMGIGFVISVLATLV  415 (577)
Q Consensus       337 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ig~~~~~l~~~~  415 (577)
                      .+.+..   .... ...+  . ...+...+...+...+....    ..++.||+++|+.       +.++.++.++++.+
T Consensus       238 ~~~y~~---~~~~~~~~~--~-~~~g~~~~~~~i~~~~~~~~----~g~l~~r~g~~~~-------l~~~~~l~~l~~~~  300 (396)
T TIGR00882       238 FANFFT---SFFATPQQG--T-RVFGYVTTMGELLNALIMFC----APLIINRIGAKNA-------LLIAGTIMSVRIIG  300 (396)
T ss_pred             HHHHHH---Hhccccccc--h-HHHHHHHHHHHHHHHHHHHH----HHHHHHHhccchh-------HHHHHHHHHHHHHH
Confidence            111100   0000 0000  0 00122233333333334444    3457777765543       66777766666655


Q ss_pred             HHHHHHHHHHHHHhcCCCCCCCccccchhhHHHHHHHHHHHHHHHHhhhhhhhhhcccCcccHHHHHHH-HHHHHhHHHH
Q 008096          416 AGFVEMKRKQAALAHGLVDKPHIIIPISVLWLVPQYSLHGIAEAFMSVGHLEFLYDQAPESMRSTATAL-FWTANSIGNY  494 (577)
Q Consensus       416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~gi~~~~~~~~~~~~v~~~~P~~~rg~~~gi-~~~~~~lg~~  494 (577)
                      ....+                      +.+++.+..++.+++..........+..+..|++.++++.+. .+....+|+.
T Consensus       301 ~~~~~----------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~at~~~~~~~~~~~lg~~  358 (396)
T TIGR00882       301 SSFAT----------------------TALEVVILKMLHAFEVPFLLVGCFKYITSQFDVRLSATIYLIGFQFAKQLAMI  358 (396)
T ss_pred             HHhcC----------------------ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcceEEEeehHHHHHHHHHHHH
Confidence            44332                      455556667788888777777777788888999999988877 6788999999


Q ss_pred             HHHHHHHHHhhhcCCCCCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHh
Q 008096          495 VSTLLVTLVHKFSAGPNGSNWLPDNNLNKGKLEYFYWLITLLQVVNVIYYF  545 (577)
Q Consensus       495 l~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  545 (577)
                      +++.+.|.+.|..                 ++...|.+.+++.++..++..
T Consensus       359 ~~~~l~G~l~~~~-----------------G~~~~f~~~~~~~~i~~~~~~  392 (396)
T TIGR00882       359 FLSTLAGNMYDSI-----------------GFQGAYLVLGCIVLLFTLISV  392 (396)
T ss_pred             HHHHhHHHHHHhc-----------------ccHHHHHHHHHHHHHHHHHHH
Confidence            9999999987643                 124456666666666555443

>PRK10133 L-fucose transporter; Provisional

Probab=99.87  E-value=5.5e-20  Score=197.55  Aligned_cols=155  Identities=12%  Similarity=0.038  Sum_probs=122.5

Q ss_pred             CCCcceehHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhHhhhhchhhhhhhhhhccchhHHHHHHHH
Q 008096           13 KGGIITMPFIFANEVCEKLAVVGFHANMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADTYAGRFWTITVASI   92 (577)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~lg~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~   92 (577)
                      +++...+..+..+.+...+........+| .+++++|.|..+.+++.+.+.++..+++++.|+++||+ |||+++.++.+
T Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~-G~r~~l~~g~~   99 (438)
T PRK10133         22 RSYIIPFALLCSLFFLWAVANNLNDILLP-QFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKL-SYKAGIITGLF   99 (438)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHH
Confidence            33445445555555555555544445555 45899999999999999999999999999999999999 99999999999


Q ss_pred             HHHHHHHHHHHhhhcCCCCCCCCCCCCcccccccchhHHHHHHHHHHHhccCCcccchhhhhhccCCCCCchhhhhhhhh
Q 008096           93 IYQIGMFSLTLSAILPQLRPPPCQGDQVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKY  172 (577)
Q Consensus        93 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~  172 (577)
                      ++.++.+++.... .                  ..++..++++|+++|+|.|...+...+++.|..|+++      |...
T Consensus       100 ~~~~~~~l~~~~~-~------------------a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~------~~~~  154 (438)
T PRK10133        100 LYALGAALFWPAA-E------------------IMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESS------GHFR  154 (438)
T ss_pred             HHHHHHHHHHHHH-h------------------cCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhh------HHHH
Confidence            9999988764221 0                  1267889999999999999999999999998766544      5556


Q ss_pred             hhHHHHHHHHHHHHHHHHHHhh
Q 008096          173 FNWYYFVMGAAVLVAVTVLVYI  194 (577)
Q Consensus       173 ~~~~~~~~~ig~~lg~~i~~~l  194 (577)
                      .+++.....+|..+|+.+++.+
T Consensus       155 ~s~~~~~~~~G~~~g~~~g~~l  176 (438)
T PRK10133        155 LNLAQTFNSFGAIIAVVFGQSL  176 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            7888888889999998887654

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.87  E-value=1.4e-19  Score=196.63  Aligned_cols=360  Identities=14%  Similarity=0.058  Sum_probs=242.4

Q ss_pred             ceehHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhHhhhhchhhhhhhhhhccchhHHHHHHHHHHHH
Q 008096           17 ITMPFIFANEVCEKLAVVGFHANMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADTYAGRFWTITVASIIYQI   96 (577)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~lg~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~i   96 (577)
                      |.+..+....++.+++.+....-++-++. ++.-|+...+++..+..+-..+..+++|.++||+ .|||.++.+-++..+
T Consensus        10 ~~Fr~lw~a~~iS~lG~~~~~va~~wlv~-~lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~-drrrili~~~~~~~~   87 (524)
T PF05977_consen   10 RNFRRLWIAQLISNLGDWMQTVALAWLVT-QLTGSPLMVALVQAASTLPILLLSLFAGALADRF-DRRRILILSQLLRAL   87 (524)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-cchHHHHHHHHHHHH
Confidence            45566667777777777766666665554 5677999999999999999999999999999999 999999999988877


Q ss_pred             HHHHHHHhhhcCCCCCCCCCCCCcccccccchhHHHHHHHHHHHhccCCcccchhhhhhccCCCCCchhhhhhhhhhhHH
Q 008096           97 GMFSLTLSAILPQLRPPPCQGDQVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWY  176 (577)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  176 (577)
                      ....+++.....                 ..+.+.+++.-++.|++.+...|+.++++.|.+|+++      ...+.++.
T Consensus        88 ~~~~L~~l~~~~-----------------~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~------L~~A~al~  144 (524)
T PF05977_consen   88 VALLLAVLAFFG-----------------LLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKED------LPAANALN  144 (524)
T ss_pred             HHHHHHHHHHhC-----------------cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhh------HHHHHHHH
Confidence            666655543121                 2367888899999999999999999999999999888      88999999


Q ss_pred             HHHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHHHHHHHHHccccccccCCCCChhhHHHHHHHHHHhhccccCCCC
Q 008096          177 YFVMGAAVLVAVTVLVYIQDNVGWNWGLGIPTVAMFLSIIAFVFGYPLYRNLNPAGSPFVRLMQVCVAAFRKRNLDMVSD  256 (577)
Q Consensus       177 ~~~~~ig~~lg~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (577)
                      +...|+..++||.++|.+...+|-.++|.+.++..++++.++...+++.++.+...+   ++.+.++..++.        
T Consensus       145 s~~~niar~iGPalgG~Lva~~G~~~~f~inalsfl~~i~~l~~~~~~~~~~~~~~e---~~~~~l~~G~ry--------  213 (524)
T PF05977_consen  145 SISFNIARIIGPALGGILVAFFGAAAAFLINALSFLISILALLRWKPPPPPSSLPRE---RFFSALREGLRY--------  213 (524)
T ss_pred             HHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccchh---hhhhhHHHHHHH--------
Confidence            999999999999999999888898889998888776665555444332211111111   111111111000        


Q ss_pred             CcccccccchhhhhhcCCcccccccchhhhhhhhccccccCCCCCcccccchhhhhhhhhh-hhhhhHHHHHHHHHHHhh
Q 008096          257 PNVLYQNEELDASICLDGKLLHTKHMKFLDKAAIVTEEDDIKSPNLWRLNTVHRVEELKSV-IRMGPIWASGILLITAYA  335 (577)
Q Consensus       257 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~-~~~~~l~~~~~~~~~~~~  335 (577)
                                                                       .+.+  ...+.+ .+...+.+..   .....
T Consensus       214 -------------------------------------------------v~~~--~~l~~~l~~~~~~~l~~---~a~~a  239 (524)
T PF05977_consen  214 -------------------------------------------------VRSS--PPLRSVLLRSFLFNLFA---SAVWA  239 (524)
T ss_pred             -------------------------------------------------Hhcc--hHHHHHHHHHHHHHHhh---hHHHH
Confidence                                                             0000  001111 1111111111   01110


Q ss_pred             ccceeEEeeccccccccccccccccchhhhhhHHHHHHHHHhhhhhhhhccccccCCCCCCCchhHHHHHHHHHHHHHHH
Q 008096          336 QQGTFSLQQAKSMDRHLTKSFQIPAGSMSVFTMVSMLSTIALYDRIIIPVARKFTGLDRGITFLHRMGIGFVISVLATLV  415 (577)
Q Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ig~~~~~l~~~~  415 (577)
                             ..+......++ +-....+.+.+...++.++++.+..+    +.+|...       .+.+..+.++.+++++.
T Consensus       240 -------LlPl~a~~~l~-~~a~~yGll~a~~gvGai~Gal~~~~----l~~~~~~-------~~lv~~~~~~~a~~~~~  300 (524)
T PF05977_consen  240 -------LLPLFARDVLG-GGASGYGLLLAAFGVGAILGALLLPR----LRRRLSS-------RRLVLLASLLFALALLL  300 (524)
T ss_pred             -------hhhHHHHHHhC-CcHHHHHHHHHHHHHHHHHHHHHHHH----hhcccCc-------chhhHHHHHHHHHHHHH
Confidence                   11111222221 11112334444455555555555333    4444322       22256677777777776


Q ss_pred             HHHHHHHHHHHHHhcCCCCCCCccccchhhHHHHHHHHHHHHHHHHhhhhhhhhhcccCcccHHHHHHHHHHHHhHHHHH
Q 008096          416 AGFVEMKRKQAALAHGLVDKPHIIIPISVLWLVPQYSLHGIAEAFMSVGHLEFLYDQAPESMRSTATALFWTANSIGNYV  495 (577)
Q Consensus       416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~gi~~~~~~~~~~~~v~~~~P~~~rg~~~gi~~~~~~lg~~l  495 (577)
                      +++..                      +.+...+..++.|.+........++.+.+..|++.||...+++++....+..+
T Consensus       301 lal~~----------------------~~~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~l  358 (524)
T PF05977_consen  301 LALSP----------------------SFWLALIALFLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPL  358 (524)
T ss_pred             Hhcch----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHH
Confidence            66654                      55666677788899989999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhc
Q 008096          496 STLLVTLVHKFS  507 (577)
Q Consensus       496 ~~~i~~~v~~~~  507 (577)
                      |.++.|.+.+..
T Consensus       359 Gsll~G~la~~~  370 (524)
T PF05977_consen  359 GSLLWGFLADHF  370 (524)
T ss_pred             HHHHHHHHHHHh
Confidence            999999987654

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=99.86  E-value=8.5e-22  Score=207.17  Aligned_cols=366  Identities=35%  Similarity=0.600  Sum_probs=233.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCcccccccchhHHHHHHHHHHHhccCCcccchhhhhhccCCCCCc
Q 008096           84 FWTITVASIIYQIGMFSLTLSAILPQLRPPPCQGDQVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDP  163 (577)
Q Consensus        84 k~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~  163 (577)
                      .|++.++.+++.+|+++++++. .|...            .++.+...++++..+.++|.|+..|+..++++|++++++.
T Consensus         1 yktI~~g~~~~~~G~~ll~l~~-~~~~~------------~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~   67 (372)
T PF00854_consen    1 YKTILLGSIVYLLGHVLLTLSA-IPPSL------------PSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDD   67 (372)
T ss_dssp             HHHHHHHHHHHHHHHHH--HHH-TSSSC------------------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTT
T ss_pred             CHhhhHHHHHHHHHHHHhHHHH-hcchh------------hhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccch
Confidence            4789999999999999988877 34311            1233567899999999999999999999999999998752


Q ss_pred             hhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHHHHHHHHHcccccccc-CCCCChhhH-HHHH
Q 008096          164 KQATKTWKYFNWYYFVMGAAVLVAVTVLVYIQDNVGWNWGLGIPTVAMFLSIIAFVFGYPLYRNL-NPAGSPFVR-LMQV  241 (577)
Q Consensus       164 ~~~~~r~~~~~~~~~~~~ig~~lg~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~  241 (577)
                      ++   |.++++++|++.|+|..+++.+.+++.+++||.+.|.++.+.++++++.+...+++++.. ++.+++..+ ....
T Consensus        68 ~~---~~~~F~~fY~~in~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~~~~~y~~~~~~~~~~~~~~~~~~  144 (372)
T PF00854_consen   68 SR---RDSFFNWFYWGINIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFLSGRKRYRKVAPPGGSPLTNFIKLV  144 (372)
T ss_dssp             TH---HHHHHHHHHHHHHHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHHCCCCTT--S-----S--S--SHHH
T ss_pred             hh---hhhhHHHHHHHHhhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHHhCCcCCcCcCccCCcccchhHHHH
Confidence            33   788899999999999999999999999999999999999999999999999998888777 566666665 3334


Q ss_pred             HHHHHhhccccCCCCCcccccccchhhhhhcCCcccccccchhhhhhhhccccccCCCCCcccc-cchhhhhhhhhhhhh
Q 008096          242 CVAAFRKRNLDMVSDPNVLYQNEELDASICLDGKLLHTKHMKFLDKAAIVTEEDDIKSPNLWRL-NTVHRVEELKSVIRM  320 (577)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~k~~~~~  320 (577)
                      +....+++....+....++.......+    ........  .... .....    ......|.. ++.++.+..|.+.+.
T Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~--~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~k~~~~~  213 (372)
T PF00854_consen  145 LVAAFKKRKLAVPKGSSWLDWALFQYS----ERSIFGII--VFIR-AAVIF----FPEIFFWALFCQVQRVEELKALIRF  213 (372)
T ss_dssp             HHHHHHHHCCCH-HHHHHHHHHHHHHC----CCCCCCCC--CHHH-HHHHH----CCCHHHHTTTSSTTTHHHCCHHHCH
T ss_pred             HHHHHHHhhcccccchHHHHHhhhhhh----hhhhhhhh--hhcc-chhhh----hhhhhhcccCCccceeeeeeeeeec
Confidence            444444444333222212221111000    00000000  0000 00000    000011111 123345566677777


Q ss_pred             hhHHHHHHHHHHHhhccceeEEeeccccccccccccccccchhhhhhHHHHHHHHHhhhhhhhhccccccCCCCCCCchh
Q 008096          321 GPIWASGILLITAYAQQGTFSLQQAKSMDRHLTKSFQIPAGSMSVFTMVSMLSTIALYDRIIIPVARKFTGLDRGITFLH  400 (577)
Q Consensus       321 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~  400 (577)
                      ++.+.+.+.+.+...+...+...+...++....+.+++++..+.+++.+.+++..|+++++++|+.++  ++.  .++..
T Consensus       214 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~l~~~n~i~iii~~pi~~~~~~p~~~~--~~~--~~~~~  289 (372)
T PF00854_consen  214 LPIFLFWIFYWQMYSQLNTFFLLQVPQMDRGIGGLFGIPPAWLQSFNPIFIIIFIPILDRVVYPLLRR--GIQ--PSPPQ  289 (372)
T ss_dssp             HHCCCHHHHHHHHCTCCHHHHHHCGGGTTT-SS------SGGGTTHHHHHCHHHHHHHHHHCCCTTTT----------HH
T ss_pred             cccCeEEEEeeehhhhhhhHHHHhccccccccccccccccchhhhHHHHHHHHHHHHHHHHHhHHhhh--ccc--chhhh
Confidence            77777777777777777776667777777667633889999999999999999999999999999882  222  37888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccccchhhHHHHHHHHHHHHHHHHhhhhhhhhhcccCcccHHH
Q 008096          401 RMGIGFVISVLATLVAGFVEMKRKQAALAHGLVDKPHIIIPISVLWLVPQYSLHGIAEAFMSVGHLEFLYDQAPESMRST  480 (577)
Q Consensus       401 ~~~ig~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~gi~~~~~~~~~~~~v~~~~P~~~rg~  480 (577)
                      ++.+|+++..++.+....++.+|......++         ..+.++.+..+++..++|.+..+...+...|.+|++..+.
T Consensus       290 k~~~G~~~~~~~~~~~~~v~~~r~~~~~~~~---------~~~~~~~~~~~~~~~~~e~~l~~~g~~~~~~~a~~~~p~~  360 (372)
T PF00854_consen  290 KFGIGMVFAILAMFVAAIVEIRRLCYAQPCG---------KVSPWWQVPMYIFWLIPEYFLSGTGESAAYEFAPSRAPSS  360 (372)
T ss_dssp             HHHHH-HHHHHHHHTTTHHHH---HH----T---------T--THHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTT-SSS
T ss_pred             hhhHHHHHHHHHHHHHHHHHhhhhhcccccC---------CCChhhHHHHHHHHHHHHHHhhHHHHHHHHHhhHHhhhHH
Confidence            9999999999998888877765554444443         2344677799999999999999999997777777766666


Q ss_pred             HHHHHHHHH
Q 008096          481 ATALFWTAN  489 (577)
Q Consensus       481 ~~gi~~~~~  489 (577)
                      .+|++....
T Consensus       361 m~~~~~~~~  369 (372)
T PF00854_consen  361 MMGIWFALS  369 (372)
T ss_dssp             STHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            666665443

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.86  E-value=2e-19  Score=215.86  Aligned_cols=360  Identities=12%  Similarity=0.044  Sum_probs=220.3

Q ss_pred             cceehHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCh--HHHHHHHHHHhHhhhhchhhhhhhhhhccchhHHHHHHHHH
Q 008096           16 IITMPFIFANEVCEKLAVVGFHANMISYLTTQLHMPL--TKAANTLTNFGGTGSLTPLIGAFVADTYAGRFWTITVASII   93 (577)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~lg~s~--~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~   93 (577)
                      .+.+..++...++.++...+....+..++...++.+.  ...+++.+++.++..++++++|+++||+ |||++++++.++
T Consensus         8 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~-grk~~l~~~~~~   86 (1146)
T PRK08633          8 IIGFLPLLLTQFLNAFNDLGHKILIQNTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKF-SKNRVIRIVKLF   86 (1146)
T ss_pred             hhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccc-cHHHHHHHHHHH
Confidence            3455666667777777666666677777777777654  4478999999999999999999999999 999999998877


Q ss_pred             HHHHHHHHHHhhhcCCCCCCCCCCCCcccccccchhHHHHHHHHHHHhccCCcccchhhhhhccCCCCCchhhhhhhhhh
Q 008096           94 YQIGMFSLTLSAILPQLRPPPCQGDQVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYF  173 (577)
Q Consensus        94 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  173 (577)
                      ..++.+++.++..                   ..+++.+++.|+++|++.+...|+..++++|++|+++      |++++
T Consensus        87 ~~~~~~~~~~~~~-------------------~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~------r~~~~  141 (1146)
T PRK08633         87 EVGLTLLIVLAYY-------------------LGWFWLAFAVTFLLGAQSAIYSPAKYGIIPELVGKEN------LSRAN  141 (1146)
T ss_pred             HHHHHHHHHHHHH-------------------HccHHHHHHHHHHHHHHHHhhchHHHhhhHHhcCccc------chhhh
Confidence            6666655554321                   1157889999999999999999999999999999888      99999


Q ss_pred             hHHHHHHHHHHHHHHHHHHhhccc--------c-cchhhhHHHHHHHHHHHHHHHHccccccccCCCCChhhHHHHHHHH
Q 008096          174 NWYYFVMGAAVLVAVTVLVYIQDN--------V-GWNWGLGIPTVAMFLSIIAFVFGYPLYRNLNPAGSPFVRLMQVCVA  244 (577)
Q Consensus       174 ~~~~~~~~ig~~lg~~i~~~l~~~--------~-gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (577)
                      +++..+.++|.++|+.+++++.+.        + +|.+.+.+..+...+..+++.+..++.+..++..+...+       
T Consensus       142 ~~~~~~~~ig~~lg~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------  214 (1146)
T PRK08633        142 GLLEAFTIVAILAGTALFSFLFESVNGNTPSEILGRIAPAGLVLLAVAVLGLIFAYRLPKVPAAAPEVFDKKK-------  214 (1146)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhccccccccccchHHHHHHHHHHHHHHHHHHhcCcCCCCCCcccccccc-------
Confidence            999999999999999999998765        2 343333333322222222222222221110000000000       


Q ss_pred             HHhhccccCCCCCcccccccchhhhhhcCCcccccccchhhhhhhhccccccCCCCCcccccchhhhhhhhhhhhhh-hH
Q 008096          245 AFRKRNLDMVSDPNVLYQNEELDASICLDGKLLHTKHMKFLDKAAIVTEEDDIKSPNLWRLNTVHRVEELKSVIRMG-PI  323 (577)
Q Consensus       245 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~-~l  323 (577)
                                 .     .                 ......               ..+     +.....+.+.... ..
T Consensus       215 -----------~-----~-----------------~~~~~~---------------~~~-----~~l~~~~~~~~~~~~~  241 (1146)
T PRK08633        215 -----------Y-----L-----------------FPKLLW---------------RNL-----KLLRSDRVLWLAIIGL  241 (1146)
T ss_pred             -----------c-----c-----------------cHHHHH---------------HHH-----HHHhcCcHHHHHHHHH
Confidence                       0     0                 000000               000     0000111111111 11


Q ss_pred             HHHHHHHHHHhhccceeEEeecccccccccccccc--ccchhhhhhHHHHHHHHHhhhhhhhhccccccCCCCCCCchhH
Q 008096          324 WASGILLITAYAQQGTFSLQQAKSMDRHLTKSFQI--PAGSMSVFTMVSMLSTIALYDRIIIPVARKFTGLDRGITFLHR  401 (577)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~  401 (577)
                      .+.....+......+.       +....+  +.+.  ..+.+.....++.+++..+    .+++.+|.++++.       
T Consensus       242 ~~~~~~~~~~~~~~~~-------~~~~~~--g~s~~~~~g~~~~~~~ig~~~g~~~----~g~l~~r~~~~~~-------  301 (1146)
T PRK08633        242 SYFWFISQLAQANFPA-------YAKEVL--GLDNTFQVQYLLAASAIGIGIGSLL----AGRLSGRHIELGL-------  301 (1146)
T ss_pred             HHHHHHHHHHHHhhHH-------HHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHH----HHHHhCCceEccc-------
Confidence            1111111111111111       111111  1111  1233334444444455555    4446666654433       


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccccchhhHHHHHHHHHHHHHHHHhhhhhhhhhcccCcccHHHH
Q 008096          402 MGIGFVISVLATLVAGFVEMKRKQAALAHGLVDKPHIIIPISVLWLVPQYSLHGIAEAFMSVGHLEFLYDQAPESMRSTA  481 (577)
Q Consensus       402 ~~ig~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~gi~~~~~~~~~~~~v~~~~P~~~rg~~  481 (577)
                      +.++.++.+++++++....                      +.+.+++..++.+++.++..+..+.++.+.+|++.||++
T Consensus       302 ~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~rg~~  359 (1146)
T PRK08633        302 VPLGALGLALSLFLLPTAP----------------------SLASVLVLFFLFGFSAGLFIVPLNALIQFRAPEKELGKV  359 (1146)
T ss_pred             hhHHHHHHHHHHHHHHHhh----------------------hHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCccchhhh
Confidence            5666666666665555433                      455556667788888888888899999999999999999


Q ss_pred             HHHHHHHHhHHHHHHHHHHHHH
Q 008096          482 TALFWTANSIGNYVSTLLVTLV  503 (577)
Q Consensus       482 ~gi~~~~~~lg~~l~~~i~~~v  503 (577)
                      +|+.++...+|..+++.+.+.+
T Consensus       360 ~~~~~~~~~lg~~~~~~~~~~l  381 (1146)
T PRK08633        360 LAANNFLQNVGMLLFLALTTLF  381 (1146)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999998887776654

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.86  E-value=5.3e-20  Score=220.57  Aligned_cols=347  Identities=13%  Similarity=-0.008  Sum_probs=200.5

Q ss_pred             HHHHhcCCCh-HHHHHHHHHHhHhhhhchhhhhhhhhhccchhHHHHHHHH--HHHHHHHHHHHhhhcCCCCCCCCCCCC
Q 008096           43 YLTTQLHMPL-TKAANTLTNFGGTGSLTPLIGAFVADTYAGRFWTITVASI--IYQIGMFSLTLSAILPQLRPPPCQGDQ  119 (577)
Q Consensus        43 ~l~~~lg~s~-~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~  119 (577)
                      .+..+.+.+. ...++..+++.+...++++++|+++||| |||+++.....  +........++..              
T Consensus        41 ~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~G~laDr~-~rk~~~~~~~~~~~~~~~~~~~~~~~--------------  105 (1140)
T PRK06814         41 GLSGALGAYNNALVTLAGAVFILPFFIFSALAGQLADKY-DKAKLAKILKFAEIGIAALAIYGFHL--------------  105 (1140)
T ss_pred             HhccccccchHHHHHHHHHHHHHHHHHHhhhHHhhhhhc-cHHHHHHHHHHHHHHHHHHHHHHHHH--------------
Confidence            3444444333 4578888899999999999999999999 99997643222  1111212222211              


Q ss_pred             cccccccchhHHHHHHHHHHHhccCCcccchhhhhhccCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhccccc
Q 008096          120 VCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAVLVAVTVLVYIQDNVG  199 (577)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~lg~~i~~~l~~~~g  199 (577)
                             .+++.+++.|+++|++.++..|+..+++.|++|+++      |++++++.+++.++|.++||.++|++....|
T Consensus       106 -------~s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~------~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~  172 (1140)
T PRK06814        106 -------NSVPLLFAALFLMGIHSALFGPIKYSILPDHLNKDE------LLGANALVEAGTFIAILLGTIIGGLATISGN  172 (1140)
T ss_pred             -------hhHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCccc------cchhhHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence                   168889999999999999999999999999999988      9999999999999999999999999999999


Q ss_pred             chhhhHHHHHHHHHHHHHHHHccccccccCCCCC----hhhHHHHHHHHHHhhccccCCCCCcccccccchhhhhhcCCc
Q 008096          200 WNWGLGIPTVAMFLSIIAFVFGYPLYRNLNPAGS----PFVRLMQVCVAAFRKRNLDMVSDPNVLYQNEELDASICLDGK  275 (577)
Q Consensus       200 w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  275 (577)
                      |++.|+...+..++++++.....+. +..++..+    ..++...                                   
T Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-----------------------------------  216 (1140)
T PRK06814        173 FVILVALLMGIAVLGWLASLFIPKT-GNAAPDLKIDRNIIRSTIT-----------------------------------  216 (1140)
T ss_pred             cHHHHHHHHHHHHHHHHHHhhCCCC-CCCCCCCeeccchHHHHHH-----------------------------------
Confidence            9998855544444444443333221 11100000    0000000                                   


Q ss_pred             ccccccchhhhhhhhccccccCCCCCcccccchhhhhhhhhhhhh-hhHHHHHHHHHHHhhccceeEEeecccccccccc
Q 008096          276 LLHTKHMKFLDKAAIVTEEDDIKSPNLWRLNTVHRVEELKSVIRM-GPIWASGILLITAYAQQGTFSLQQAKSMDRHLTK  354 (577)
Q Consensus       276 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (577)
                                                .+     +...+.+.+... +...+....+.....+.+.+       ....++ 
T Consensus       217 --------------------------~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-------~~~~~g-  257 (1140)
T PRK06814        217 --------------------------LL-----KYAKADKRIWLAILGISWFWLVGAVVLSQLPLL-------AKETLG-  257 (1140)
T ss_pred             --------------------------HH-----HHHhcCchHHHHHHHHHHHHHHHHHHHHHhHHH-------HHHHcC-
Confidence                                      00     000011111111 11111111111111111111       121121 


Q ss_pred             ccccccchhhhhhHHHHHHHHHhhhhhhhhccccccCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 008096          355 SFQIPAGSMSVFTMVSMLSTIALYDRIIIPVARKFTGLDRGITFLHRMGIGFVISVLATLVAGFVEMKRKQAALAHGLVD  434 (577)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ig~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  434 (577)
                      ......+.+.+...++.+++..+.++    +.+|..+++.       +..+.++.++..+.+.+...  ........+..
T Consensus       258 ~~~~~~g~~~~~~~~g~~ig~~~~g~----l~~~~~~~~~-------~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~  324 (1140)
T PRK06814        258 GDENVATLFLAVFSVGVAVGSFLASK----LSEGRITLLY-------VPIGALLMGLFGLDLAFASS--SVPAEPAQLKS  324 (1140)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHH----HhCCceeeee-------ehHHHHHHHHHHHHHHhccc--ccccccccccc
Confidence            00112344455555666666666554    4444332221       33444444333332222100  00000000000


Q ss_pred             CCCccccchhhHHHHHHHHHHHHHHHHhhhhhhhhhcccCcccHHHHHHHHHHHHhHHHHHHHHHHHHHhh
Q 008096          435 KPHIIIPISVLWLVPQYSLHGIAEAFMSVGHLEFLYDQAPESMRSTATALFWTANSIGNYVSTLLVTLVHK  505 (577)
Q Consensus       435 ~~~~~~~~~~~~l~~~~~l~gi~~~~~~~~~~~~v~~~~P~~~rg~~~gi~~~~~~lg~~l~~~i~~~v~~  505 (577)
                      --......+.+.+.+..++.|++.++..+..++++.+.+|++.||+++|+.++.+.++..+++.+.+.+.+
T Consensus       325 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~  395 (1140)
T PRK06814        325 ILVFLSKRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQA  395 (1140)
T ss_pred             hhhhhcccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHHH
Confidence            00000002334556667778999999999999999999999999999999999999999999999888753

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=99.86  E-value=1.9e-20  Score=195.83  Aligned_cols=159  Identities=15%  Similarity=0.167  Sum_probs=132.7

Q ss_pred             ehHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhHhhhhchhhhhhhhhhccchhHHHHHHHHHHHHHH
Q 008096           19 MPFIFANEVCEKLAVVGFHANMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADTYAGRFWTITVASIIYQIGM   98 (577)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~lg~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~i~~   98 (577)
                      .+......++.....+...+++|.++++++|+|..+.+++.+.+.++..+++++.|+++||+ |||+.+.++.++..++.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~i~~   81 (366)
T TIGR00886         3 LFFSWFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKF-GPRYTTTLSLLLLAIPC   81 (366)
T ss_pred             hHHHHHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHHHH
Confidence            34455566666677777788888789999999999999999999999999999999999998 99999999999999998


Q ss_pred             HHHHHhhhcCCCCCCCCCCCCcccccccchhHHHHHHHHHHHhccCCcccchhhhhhccCCCCCchhhhhhhhhhhHHHH
Q 008096           99 FSLTLSAILPQLRPPPCQGDQVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYF  178 (577)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~  178 (577)
                      ++++++.                     .+++.+++.|+++|++.+. .+...++++|++|+++      |+++.+++..
T Consensus        82 ~~~~~~~---------------------~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~------r~~~~~~~~~  133 (366)
T TIGR00886        82 LWAGLAV---------------------QSYSVLLLLRLFIGIAGGS-FASCMPWISFFFPKKI------QGTALGLAAG  133 (366)
T ss_pred             HHHHHHh---------------------hhHHHHHHHHHHHHHhchh-hHhHHHHHHHhcCHhh------hhHHHHHHHH
Confidence            8888754                     1467788999999999665 4667889999999887      9999999888


Q ss_pred             HHHHHHHHHHHHHHhhcc----------cccchhhhHH
Q 008096          179 VMGAAVLVAVTVLVYIQD----------NVGWNWGLGI  206 (577)
Q Consensus       179 ~~~ig~~lg~~i~~~l~~----------~~gw~~~f~~  206 (577)
                      ..++|..+++.+++.+..          ..+||+.|++
T Consensus       134 ~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~w~~~~~~  171 (366)
T TIGR00886       134 WGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWGWAFVI  171 (366)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHhcccccccccccchhHH
Confidence            888888888777765543          3489999943

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.86  E-value=2.6e-19  Score=188.97  Aligned_cols=341  Identities=13%  Similarity=0.044  Sum_probs=208.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhHhhhhchhhhhhhhhhccchh----HHHHHHHHHHHHH
Q 008096           22 IFANEVCEKLAVVGFHANMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADTYAGRF----WTITVASIIYQIG   97 (577)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~l~~~l~~~lg~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grk----~~~~~~~~~~~i~   97 (577)
                      .....++..++...+.+++|.|++ ++|.|..+.|++.+.+.+...+++++.|+++||+ ||+    +.+.++..+..  
T Consensus         9 ~~~~~~~~~~~~g~~~p~l~~~l~-~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~--   84 (382)
T PRK11128          9 LALSYFGYFFAYGVFLPFWSVWLK-GQGYTPETIGLLLGAGLVARFLGSLLIAPRVKDP-SQLIPALRLLALLTLLFA--   84 (382)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHH-hcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhh-cchHHHHHHHHHHHHHHH--
Confidence            344466666777888889999995 5899999999999999999999999999999998 984    33322222111  


Q ss_pred             HHHHHHhhhcCCCCCCCCCCCCcccccccchhHHHHHHHHHHHhccCCcccchhhhhhccCCCCCchhhhhhhhhhhHHH
Q 008096           98 MFSLTLSAILPQLRPPPCQGDQVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYY  177 (577)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~  177 (577)
                      ...+..+                      .+.+.+++.|++.|++.+...|...++..++.  ++      |+++++..+
T Consensus        85 ~~~~~~~----------------------~~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~~--~~------~~~a~~~~~  134 (382)
T PRK11128         85 VAFWFGA----------------------HSFWLLFVAIGLFNLFFSPLVPLTDALANTWQ--KQ------IGLDYGKVR  134 (382)
T ss_pred             HHHHHhc----------------------ccHHHHHHHHHHHHHHHcccccHHHHHHHHHH--hh------ccCCcchHH
Confidence            1111111                      26788889999999999999999888877762  23      667788888


Q ss_pred             HHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHHHHHHHHHccccccccCCCCChhhHHHHHHHHHHhhccccCCCCC
Q 008096          178 FVMGAAVLVAVTVLVYIQDNVGWNWGLGIPTVAMFLSIIAFVFGYPLYRNLNPAGSPFVRLMQVCVAAFRKRNLDMVSDP  257 (577)
Q Consensus       178 ~~~~ig~~lg~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (577)
                      ...++|..+||.+++++.+++|||..|++.++..++..+... ..++.   +|++++.++                .+  
T Consensus       135 ~~~~lg~~igp~lgg~l~~~~g~~~~f~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~~----------------~~--  192 (382)
T PRK11128        135 LWGSIAFVIGSALTGKLVSWFGEQAILWILTAGVASMLLGQL-LRPTI---MPQGESRQQ----------------ES--  192 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHH-ccCCC---CCccccccc----------------cc--
Confidence            888999999999999999999999999877765444433322 22211   111000000                00  


Q ss_pred             cccccccchhhhhhcCCcccccccchhhhhhhhccccccCCCCCcccccchhhhhhhhhhhhhhh-HHHHHHHHHHHhhc
Q 008096          258 NVLYQNEELDASICLDGKLLHTKHMKFLDKAAIVTEEDDIKSPNLWRLNTVHRVEELKSVIRMGP-IWASGILLITAYAQ  336 (577)
Q Consensus       258 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~-l~~~~~~~~~~~~~  336 (577)
                                                              +....+     ++..+.|....... .++...........
T Consensus       193 ----------------------------------------~~~~~~-----~~i~~~~~~~~~~~~~~l~~~~~~~~~~~  227 (382)
T PRK11128        193 ----------------------------------------AGWPAW-----KALLKEPTVWRFLLCVSLLQGSHAAYYGF  227 (382)
T ss_pred             ----------------------------------------cccchH-----HHHHcChhHHHHHHHHHHHHHHhHhHHHH
Confidence                                                    000000     11111122221111 11111111111111


Q ss_pred             cceeEEeeccccccccccccc-cccchhhhhhHHHHHHHHHhhhhhhhhccccccCCCCCCCchhHHHHHHHHHHHHHHH
Q 008096          337 QGTFSLQQAKSMDRHLTKSFQ-IPAGSMSVFTMVSMLSTIALYDRIIIPVARKFTGLDRGITFLHRMGIGFVISVLATLV  415 (577)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ig~~~~~l~~~~  415 (577)
                      .+.+       .++ .  +.+ ...+.+.....+..++...+    .+++.||+++|+       .+..+.++.+++.++
T Consensus       228 ~~~~-------~~~-~--g~s~~~~g~~~~~~~~~~~~~~~~----~g~l~~r~~~~~-------~l~~~~~~~~~~~~~  286 (382)
T PRK11128        228 SAIY-------WQA-A--GYSASTIGYLWSLGVVAEVLIFAF----SNRLFRRWSARD-------LLLLSAICGVVRWGL  286 (382)
T ss_pred             HHHH-------HHH-C--CCCHhHHHHHHHHHHHHHHHHHHH----HHHHHHHCCHHH-------HHHHHHHHHHHHHHH
Confidence            1111       111 1  111 11222333333333333333    445666654332       366777777776665


Q ss_pred             HHHHHHHHHHHHHhcCCCCCCCccccchhhHHHHHHHHHHHHHHHHhhhhhhhhhcccCcccHHHHHHHHH-HHHhHHHH
Q 008096          416 AGFVEMKRKQAALAHGLVDKPHIIIPISVLWLVPQYSLHGIAEAFMSVGHLEFLYDQAPESMRSTATALFW-TANSIGNY  494 (577)
Q Consensus       416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~gi~~~~~~~~~~~~v~~~~P~~~rg~~~gi~~-~~~~lg~~  494 (577)
                      ....+                      +.+.+++..++++++.+...+....+..+. |++.+++++++.+ ....+|..
T Consensus       287 ~~~~~----------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~  343 (382)
T PRK11128        287 MGSTT----------------------ALPWLIVIQILHCGTFTVCHLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIA  343 (382)
T ss_pred             HHhhh----------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHH
Confidence            55443                      555666678889999998888888888887 5555789999887 55778889


Q ss_pred             HHHHHHHHHhhhc
Q 008096          495 VSTLLVTLVHKFS  507 (577)
Q Consensus       495 l~~~i~~~v~~~~  507 (577)
                      +++.+.|.+.+..
T Consensus       344 ig~~i~G~l~~~~  356 (382)
T PRK11128        344 IMTVLSGFLYQHL  356 (382)
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999987654

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.85  E-value=2.4e-18  Score=187.55  Aligned_cols=178  Identities=14%  Similarity=0.137  Sum_probs=141.9

Q ss_pred             CcceehHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhHhhhhchhhhhhhhhhc----cchhHH-HHH
Q 008096           15 GIITMPFIFANEVCEKLAVVGFHANMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADTY----AGRFWT-ITV   89 (577)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~lg~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~----~Grk~~-~~~   89 (577)
                      +||..+.++...+......+.....+|.+++ +.|.|.++.+.+... ... .+..++.|.++||+    .||||. +.+
T Consensus        10 ~~~~~~~~~~l~~~~gl~~~~~~~~l~~~l~-~~g~~~~~ig~~~~~-~~~-~~~~~l~gpl~Dr~~~~~~Grrr~~ll~   86 (491)
T PRK11010         10 QQPNSAILLILGFASGLPLALTSGTLQAWMT-VENIDLKTIGFFSLV-GQA-YVFKFLWSPLMDRYTPPFLGRRRGWLLA   86 (491)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCCHHHHHHHHHH-HHH-HHHHHHHHHHHHcccccCCCCchHHHHH
Confidence            4455666777888888888888888999986 459999999997333 333 26889999999996    177775 667


Q ss_pred             HHHHHHHHHHHHHHhhhcCCCCCCCCCCCCcccccccchhHHHHHHHHHHHhccCCcccchhhhhhccCCCCCchhhhhh
Q 008096           90 ASIIYQIGMFSLTLSAILPQLRPPPCQGDQVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKT  169 (577)
Q Consensus        90 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r  169 (577)
                      +.+...++...+++..                   +..+++.+.+.+++.+++.+...+...++..|++|+++      |
T Consensus        87 ~~i~~~~~~~~~a~~~-------------------~~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~------r  141 (491)
T PRK11010         87 TQLLLLVAIAAMGFLE-------------------PGTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEE------R  141 (491)
T ss_pred             HHHHHHHHHHHHHHcC-------------------CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhh------h
Confidence            7777777777777653                   11257778889999999999999999999999999887      9


Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHhhcc-cccchhhhHHHHHHHHHHHHHHHH
Q 008096          170 WKYFNWYYFVMGAAVLVAVTVLVYIQD-NVGWNWGLGIPTVAMFLSIIAFVF  220 (577)
Q Consensus       170 ~~~~~~~~~~~~ig~~lg~~i~~~l~~-~~gw~~~f~~~~~~~~~~~~~~~~  220 (577)
                      +++.++...+..+|.++++.+++++.+ ..|||..|++.++..++..+....
T Consensus       142 g~~~~i~~~g~~lG~llg~~l~~~l~~~~~GWr~~f~i~a~l~ll~~l~~~~  193 (491)
T PRK11010        142 GAGAAISVLGYRLAMLVSGGLALWLADRYLGWQGMYWLMAALLIPCIIATLL  193 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999988 579999999988776665554443

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.84  E-value=2.7e-19  Score=187.99  Aligned_cols=157  Identities=13%  Similarity=0.101  Sum_probs=117.6

Q ss_pred             HHHHHHHHhcC--CChHHHHHHHHHH-----hHhhhhchhhhhhhhhhccchhHHHHHHHHHHHHHHHHHHHhhhcCCCC
Q 008096           39 NMISYLTTQLH--MPLTKAANTLTNF-----GGTGSLTPLIGAFVADTYAGRFWTITVASIIYQIGMFSLTLSAILPQLR  111 (577)
Q Consensus        39 ~l~~~l~~~lg--~s~~~~~~i~~~~-----~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~~~  111 (577)
                      ++..++.+++.  .++++.+.+.+..     .+...+++++.|+++||+ |||+++.++.++..++.++++++.+++.  
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~-g~r~~l~~~~~~~~~~~~~~~~~~~~~~--   90 (394)
T TIGR00883        14 FAAVLVFHTFFPPSGDPLVALLATFATFAAGFLARPLGAIVFGHFGDRI-GRKKTLVITLLMMGIGTLLIGLLPSYAT--   90 (394)
T ss_pred             HHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhh-hhHHHHHHHHHHHHHHHHHHhhCCChhh--
Confidence            34445544433  4456666555432     233346789999999998 9999999999999999999988763221  


Q ss_pred             CCCCCCCCcccccccchhHHHHHHHHHHHhccCCcccchhhhhhccCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHHHH
Q 008096          112 PPPCQGDQVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAVLVAVTVL  191 (577)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~lg~~i~  191 (577)
                                  ........+++.|+++|++.+...+...+++.|.+|+++      |++..++.+.+..+|..+++.+.
T Consensus        91 ------------~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~G~~i~~~~~  152 (394)
T TIGR00883        91 ------------IGIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGK------RGFYGSFQQVGAPVGLLLAALTV  152 (394)
T ss_pred             ------------hHHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCccc------chHHHHHHHHHHHHHHHHHHHHH
Confidence                        000112357889999999999999999999999999888      99999999999999999999887


Q ss_pred             Hhhc--------ccccchhhhHHHHHHHHHHHH
Q 008096          192 VYIQ--------DNVGWNWGLGIPTVAMFLSII  216 (577)
Q Consensus       192 ~~l~--------~~~gw~~~f~~~~~~~~~~~~  216 (577)
                      +.+.        +.++||+.|++.++..++..+
T Consensus       153 ~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~  185 (394)
T TIGR00883       153 LLLSYLLGDDALLEWGWRIPFLVSAVLVLIGLY  185 (394)
T ss_pred             HHHHHhcCHHHhhccchHHHHHHHHHHHHHHHH
Confidence            6553        357899999887766554443

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=99.84  E-value=6.3e-24  Score=228.97  Aligned_cols=398  Identities=14%  Similarity=0.137  Sum_probs=238.6

Q ss_pred             HHHHHHHHHHhHhhhhchhhhhhhhhhccchhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCcccccccchhHHH
Q 008096           53 TKAANTLTNFGGTGSLTPLIGAFVADTYAGRFWTITVASIIYQIGMFSLTLSAILPQLRPPPCQGDQVCKEADTGQLAIL  132 (577)
Q Consensus        53 ~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (577)
                      .+.+++.+...++..+++++.|+++||+ |||++++++.++..++.++.++++..                   .+.+.+
T Consensus        46 ~~~~~~~~~~~~g~~~G~~~~g~~~d~~-GRk~~~~~~~~~~~i~~~~~~~~~~~-------------------~~~~~~  105 (451)
T PF00083_consen   46 LLSSLLTSSFFIGAIVGALIFGFLADRY-GRKPALIISALLMIIGSILIAFAPSY-------------------NNFWML  105 (451)
T ss_pred             HHHHHHHHHHHhhhcccccccccccccc-cccccccccccccccccccccccccc-------------------cccccc
Confidence            4678999999999999999999999999 99999999999999999999987511                   256779


Q ss_pred             HHHHHHHHhccCCcccchhhhhhccCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhcc---cccchhhhHHHHH
Q 008096          133 YASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAVLVAVTVLVYIQD---NVGWNWGLGIPTV  209 (577)
Q Consensus       133 ~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~lg~~i~~~l~~---~~gw~~~f~~~~~  209 (577)
                      .++|++.|++.|+..+....++.|..|++.      |++..++.+.+..+|..++..+.-.+..   +.+||..+++..+
T Consensus       106 ~~~R~~~G~~~g~~~~~~~~~~~E~~~~~~------R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~  179 (451)
T PF00083_consen  106 LIGRFLIGFGIGGAYVVSPIYISEIAPPKH------RGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILLIFGAI  179 (451)
T ss_pred             cccccccccccccccccccccccccccccc------cccccccccccccccccccccccccccccccccccccccccccc
Confidence            999999999999999999999999999888      9999999999999998888776544432   2459999888877


Q ss_pred             HHHHHHHHHHHccccccccCCCCChhhHHHHHHHHHHhhccccCCCCCcccccccchhhhhhcCCcccccccchhhhhhh
Q 008096          210 AMFLSIIAFVFGYPLYRNLNPAGSPFVRLMQVCVAAFRKRNLDMVSDPNVLYQNEELDASICLDGKLLHTKHMKFLDKAA  289 (577)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  289 (577)
                      ..++.++...                                ..||||+|++.+++.++++...++.+..+..+. +...
T Consensus       180 ~~l~~~~~~~--------------------------------~~pESP~wL~~~~~~~~A~~~l~~~~~~~~~~~-~~~~  226 (451)
T PF00083_consen  180 PSLLVLLLRF--------------------------------FLPESPRWLLSKGRDEEAEKVLRKLRGKEIEDE-EIEE  226 (451)
T ss_pred             cccccccccc--------------------------------ccccccceecccccccccccccccccccccccc-cccc
Confidence            6554333322                                245666666666655555555444322111000 0000


Q ss_pred             hccccccC-CCCCcccccchhhhhhhhhhhhhhhHHHHHHHHHHHhhccceeEEeeccccccccccccccccc-hhhhhh
Q 008096          290 IVTEEDDI-KSPNLWRLNTVHRVEELKSVIRMGPIWASGILLITAYAQQGTFSLQQAKSMDRHLTKSFQIPAG-SMSVFT  367 (577)
Q Consensus       290 ~~~~~~~~-~~~~~~~~~~~~~~~~~k~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  367 (577)
                      ..++..+. +....|+....++. .+++.+..+.+.....     .........+.....+ ..+    .... ......
T Consensus       227 ~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~l~~~~~-----~~g~~~~~~~~~~i~~-~~~----~~~~~~~~~~~  295 (451)
T PF00083_consen  227 IKAEKKESQESKASWRDLFRNKK-YRKRLLIALLLQFFQQ-----FSGINFIFYYSPSIFE-NAG----ISNSFLATLIL  295 (451)
T ss_pred             cccccccccccceeeeecccccc-cccccccccccccccc-----cccccccccccccccc-ccc----ccccccccccc
Confidence            00000000 01122332222111 2223322222211110     0000000011111111 110    1111 111111


Q ss_pred             HHHHHHHHHhhhhhhhhccccccCCCCCCCchhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCCCCCCCccccchhhH
Q 008096          368 MVSMLSTIALYDRIIIPVARKFTGLDRGITFLHRMGIGFVISVLATLVAG-FVEMKRKQAALAHGLVDKPHIIIPISVLW  446 (577)
Q Consensus       368 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ig~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  446 (577)
                      .+..++...+    ...+.||++||+.       +..+..+.+++++..+ ....      ..++       ....+...
T Consensus       296 ~~~~~~~~~~----~~~~~~~~GRr~~-------~i~~~~~~~~~~~~~~~~~~~------~~~~-------~~~~~~~~  351 (451)
T PF00083_consen  296 GLVNFLGTLL----AIFLIDRFGRRKL-------LIIGLLLMAICSLILGIIFFL------GVSS-------SSWWSILS  351 (451)
T ss_pred             cccccccccc----ccccccccccccc-------ccccccccccccccccccccc------cccc-------cccccccc
Confidence            1111112222    2236677776654       6667666666655553 1110      0000       00112222


Q ss_pred             HHHHHHHHHHHHHHHhhhhhhhhhcccCcccHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCCcchh
Q 008096          447 LVPQYSLHGIAEAFMSVGHLEFLYDQAPESMRSTATALFWTANSIGNYVSTLLVTLVHKFSAGPNGSNWLPDNNLNKGKL  526 (577)
Q Consensus       447 l~~~~~l~gi~~~~~~~~~~~~v~~~~P~~~rg~~~gi~~~~~~lg~~l~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~  526 (577)
                      +....++.........+..+.+..|.+|++.|+++.|+....+++++++++.+.+.+.+..+                 .
T Consensus       352 i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~-----------------~  414 (451)
T PF00083_consen  352 IVFLALFFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLSYAVGRIGGFIIPFLFPYLFNNLG-----------------G  414 (451)
T ss_pred             ceeeeecccccccccccccccccccccccccccccccccccccccccccccccccccccccc-----------------c
Confidence            22222223334446677888899999999999999999999999999999888766533221                 1


Q ss_pred             hHHHHHHHHHHHHHHHHHhhhhhcccccccccccc
Q 008096          527 EYFYWLITLLQVVNVIYYFFCAKIYTFKPIQMHQK  561 (577)
Q Consensus       527 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  561 (577)
                      ...+..++++.++..++.+++.||+|+++.+|.++
T Consensus       415 ~~~~~i~~~~~~i~~i~~~~~lpET~g~~l~ei~~  449 (451)
T PF00083_consen  415 WGVFLIFAGVCLIAIIFVYFFLPETKGKTLEEIQE  449 (451)
T ss_pred             cccchhhHHHHHHHHhheeEEEeeCCCCCHHHHHh
Confidence            23367777888888888899999999999998764

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=99.84  E-value=2.2e-18  Score=183.54  Aligned_cols=165  Identities=12%  Similarity=0.055  Sum_probs=134.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhHhhhhchhhhhhhhhhccchhHHHHHHHHHHHHHHHHHHHh
Q 008096           25 NEVCEKLAVVGFHANMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADTYAGRFWTITVASIIYQIGMFSLTLS  104 (577)
Q Consensus        25 ~~~~~~~~~~~~~~~l~~~l~~~lg~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~i~~~~~~~~  104 (577)
                      ..+...+. +.+...+.+.+++++|+|..+.+++.+.+.++..+++++.|++.||+ |||+++.++.++++++.+++..+
T Consensus        11 ~f~~~G~~-~~~~~~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~-G~r~~~~~g~~l~~~g~~l~~~~   88 (410)
T TIGR00885        11 LFALWGFA-NDITNPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKL-SYKAGILLGLFLYALGAFLFWPA   88 (410)
T ss_pred             HHHHHHHH-HHhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHHHHHHHHHH
Confidence            33333333 45555555677899999999999999999999999999999999998 99999999999999998876544


Q ss_pred             hhcCCCCCCCCCCCCcccccccchhHHHHHHHHHHHhccCCcccchhhhhhccCCCCCchhhhhhhhhhhHHHHHHHHHH
Q 008096          105 AILPQLRPPPCQGDQVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAV  184 (577)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~  184 (577)
                      .                   ...+++.+++.|++.|+|.|...+...+++.+..|+++      |++..++.+...++|.
T Consensus        89 ~-------------------~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~lG~  143 (410)
T TIGR00885        89 A-------------------EIMNYTLFLVGLFILTAGLGFLETAANPYILVMGPEST------ATRRLNLAQSFNPFGS  143 (410)
T ss_pred             H-------------------hhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhH------HHHHHHHHHHHHHHHH
Confidence            3                   01267889999999999999999999999999988776      7788889889999999


Q ss_pred             HHHHHHHHhhcc--------------------------cccchhhhHHHHHHHHHHHH
Q 008096          185 LVAVTVLVYIQD--------------------------NVGWNWGLGIPTVAMFLSII  216 (577)
Q Consensus       185 ~lg~~i~~~l~~--------------------------~~gw~~~f~~~~~~~~~~~~  216 (577)
                      .+||.+++.+..                          ..+||++|.+.++..++..+
T Consensus       144 ~~g~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~  201 (410)
T TIGR00885       144 IIGMVVAQQLILSNLPHQSQDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVAL  201 (410)
T ss_pred             HHHHHHHHHHHhcCCccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999876632                          13699999877765554433

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>TIGR00896 CynX cyanate transporter

Probab=99.83  E-value=3.2e-19  Score=186.23  Aligned_cols=147  Identities=12%  Similarity=0.145  Sum_probs=122.4

Q ss_pred             HHHHHHHHHHHHhcCCChHHHHHHHHHHhHhhhhchhhhhhhhhhccchhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCC
Q 008096           35 GFHANMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADTYAGRFWTITVASIIYQIGMFSLTLSAILPQLRPPP  114 (577)
Q Consensus        35 ~~~~~l~~~l~~~lg~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  114 (577)
                      .....+.+.+.+++|+|.++.+++.+.+.++..+++++.|+++||+ |||+++.++.++..++.+.+ .+.         
T Consensus        17 ~~~~~~lp~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~-~~~---------   85 (355)
T TIGR00896        17 TSVGPLLPQIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRF-GEERSVAAGLLLIAAGILIR-SAP---------   85 (355)
T ss_pred             ccCcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-CchHHHHHHHHHHHHHHHHH-Hhc---------
Confidence            3333344556779999999999999999999999999999999998 99999999998887777666 333         


Q ss_pred             CCCCCcccccccchhHHHHHHHHHHHhccCCcccchhhhhhccCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHHHHHhh
Q 008096          115 CQGDQVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAVLVAVTVLVYI  194 (577)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~lg~~i~~~l  194 (577)
                                   +.+.+++.|++.|++.+...+...+++.|.+| ++      |+++.++++.+.++|..+++.+++.+
T Consensus        86 -------------~~~~l~~~~~~~g~g~~~~~~~~~~~~~~~~~-~~------~~~~~~~~~~~~~~g~~i~~~~~~~l  145 (355)
T TIGR00896        86 -------------GTALLFAGTALIGVGIAIINVLLPSLIKRDFP-QR------VGLMTGLYSMALMGGAALAAAATVPL  145 (355)
T ss_pred             -------------cHHHHHHHHHHHHHHHHHHhccchHHHHHhCc-ch------hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                         56778899999999999988888888888886 45      88999999999999999999998888


Q ss_pred             cccc--cchhhhHHHHHHHH
Q 008096          195 QDNV--GWNWGLGIPTVAMF  212 (577)
Q Consensus       195 ~~~~--gw~~~f~~~~~~~~  212 (577)
                      .+..  +||+.|.+.++..+
T Consensus       146 ~~~~~~~w~~~f~~~~~~~~  165 (355)
T TIGR00896       146 AQHSGGHWQQALAWWALPAL  165 (355)
T ss_pred             HHhhhhhHHHHHHHHHHHHH
Confidence            7654  39988876655443

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>TIGR00901 2A0125 AmpG-related permease

Probab=99.83  E-value=1.4e-18  Score=181.33  Aligned_cols=154  Identities=13%  Similarity=0.131  Sum_probs=120.6

Q ss_pred             HHHHHHHHhcCCChHHHHHHHHHHhHhhhhchhhhhhhhhhc----cchhHH-HHHHHHHHHHHHHHHHHhhhcCCCCCC
Q 008096           39 NMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADTY----AGRFWT-ITVASIIYQIGMFSLTLSAILPQLRPP  113 (577)
Q Consensus        39 ~l~~~l~~~lg~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~----~Grk~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~  113 (577)
                      .+|.+ .+++|+|.+|.++.... .+...+ .++.|.++||+    +||||. +..+.++..+....+++..+       
T Consensus        10 ~~~~~-~~~~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~-------   79 (356)
T TIGR00901        10 TLPYW-LRSKNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVP-------   79 (356)
T ss_pred             HHHHH-HHHcCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCc-------
Confidence            34444 45789999999999755 444444 88999999997    388887 45667667777666665531       


Q ss_pred             CCCCCCcccccccchhHHHHHHHHHHHhccCCcccchhhhhhccCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHHHHHh
Q 008096          114 PCQGDQVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAVLVAVTVLVY  193 (577)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~lg~~i~~~  193 (577)
                                  ..+.+.+....++.+++.+...+...+++.|++|+++      |+++.++...+.++|.++++.+++.
T Consensus        80 ------------~~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~------r~~~~~~~~~~~~~G~~~~~~l~~~  141 (356)
T TIGR00901        80 ------------STDLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEE------LGYGSTIYIVGYRAGMLLSGSLALV  141 (356)
T ss_pred             ------------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhh------hchHHHHHHHHHHHHHHHHHHHHHH
Confidence                        1245666677778888889899999999999999877      9999999999999999999999999


Q ss_pred             hccccc--------chhhhHHHHHHHHHHHHHHHH
Q 008096          194 IQDNVG--------WNWGLGIPTVAMFLSIIAFVF  220 (577)
Q Consensus       194 l~~~~g--------w~~~f~~~~~~~~~~~~~~~~  220 (577)
                      +....|        ||..|++.++..++..+...+
T Consensus       142 l~~~~g~~~~~~~~wr~~f~i~ai~~l~~~~~~~~  176 (356)
T TIGR00901       142 LASPEFANTGLITLWGYIFFWTALLILPGLLVTLF  176 (356)
T ss_pred             HhhhcccccccccccHHHHHHHHHHHHHHHHHHHH
Confidence            888777        999999888876665554443

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.82  E-value=2.8e-17  Score=174.70  Aligned_cols=168  Identities=13%  Similarity=0.106  Sum_probs=135.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhHhhhhchhhhhhhhhhcc----chhH-HHHHHHHHHHH
Q 008096           22 IFANEVCEKLAVVGFHANMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADTYA----GRFW-TITVASIIYQI   96 (577)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~l~~~l~~~lg~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~----Grk~-~~~~~~~~~~i   96 (577)
                      ++...+.....+.-...-+|.|+++ .|+|.+|.|++......  .+..++.|+++||+.    |||| .+.++.++.++
T Consensus         4 ~~~l~~~~~~~~~~~~~~~~~~l~~-~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l   80 (402)
T PRK11902          4 MLLLGFASGLPLALTSGTLQAWMTV-EGLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAA   80 (402)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHH
Confidence            3456666677777778889999985 59999999999777776  688999999999972    5654 78888888888


Q ss_pred             HHHHHHHhhhcCCCCCCCCCCCCcccccccchhHHHHHHHHHHHhccCCcccchhhhhhccCCCCCchhhhhhhhhhhHH
Q 008096           97 GMFSLTLSAILPQLRPPPCQGDQVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWY  176 (577)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  176 (577)
                      +...+++..                   ...+.+.+++..++.++..+...+...+++.|++|+++      |+++.++.
T Consensus        81 ~~~~l~~~~-------------------~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~------r~~~~~~~  135 (402)
T PRK11902         81 SIAAMAFCP-------------------PHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEE------RGAGAAVK  135 (402)
T ss_pred             HHHHHHhcC-------------------ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhh------hhHHHHHH
Confidence            888777653                   11246667777777888889899999999999999888      99999999


Q ss_pred             HHHHHHHHHHHHHHHHhhccc-ccchhhhHHHHHHHHHHHHH
Q 008096          177 YFVMGAAVLVAVTVLVYIQDN-VGWNWGLGIPTVAMFLSIIA  217 (577)
Q Consensus       177 ~~~~~ig~~lg~~i~~~l~~~-~gw~~~f~~~~~~~~~~~~~  217 (577)
                      .++..+|.++++.+++++.+. .|||..|++.++..++..+.
T Consensus       136 ~~g~~~g~i~g~~l~~~l~~~~~gw~~~f~i~a~~~l~~~l~  177 (402)
T PRK11902        136 VLGYRLAMLVSGGLALWLADRVLGWGNTYLLMAGLMLAGALT  177 (402)
T ss_pred             HHHHHHHHHHHhHHHHHHHhcccCHHHHHHHHHHHHHHHHHH
Confidence            999999999999999888875 59999999888766554443

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=99.80  E-value=6.4e-17  Score=173.13  Aligned_cols=442  Identities=10%  Similarity=0.029  Sum_probs=249.1

Q ss_pred             ehHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhHhhhhchhhhhhhhhh----ccchhHHHHHH-HHH
Q 008096           19 MPFIFANEVCEKLAVVGFHANMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADT----YAGRFWTITVA-SII   93 (577)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~lg~s~~~~~~i~~~~~~~~~~~~~~~G~laDr----~~Grk~~~~~~-~~~   93 (577)
                      ++.+-...+..++.+-...++++.|+ +++|.+..+.+++..+..+...+.+++.|+++||    + ||||.++++ .+.
T Consensus         6 li~~~~~~~Giq~~~~l~~~~l~~yl-~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~-GRRrp~il~g~~~   83 (477)
T TIGR01301         6 LLRVASVAAGVQFGWALQLSLLTPYV-QELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRF-GRRRPFIAAGAAL   83 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCC-CChHHHHHHHHHH
Confidence            34444455666777777777888877 5799999999999999999999999999999994    8 999988775 566


Q ss_pred             HHHHHHHHHHhhhcCCCCCCCCCCCCcccccccchhHHHHHHHHHHHhccCCcccchhhhhhccCCCCCchhhhhhhhhh
Q 008096           94 YQIGMFSLTLSAILPQLRPPPCQGDQVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYF  173 (577)
Q Consensus        94 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  173 (577)
                      ..++..+++++.++.....+.-     -........+..+++..+..++....++...++++|++|+++++    ++.+.
T Consensus        84 ~~~~l~ll~~~~~~~~~~~~~~-----~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~----~~~a~  154 (477)
T TIGR01301        84 VAFAVILIGFAADIGHLFGDNL-----DKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARR----TRIAN  154 (477)
T ss_pred             HHHHHHHHHhCchhhhhccccc-----cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHH----HHHHH
Confidence            6677777777653221110000     00000111234455555667788888888999999999987511    35789


Q ss_pred             hHHHHHHHHHHHHHHHHHHhh--cccc-------------cchhhhHHHHHHHHHHHHHHHHccccccccCCCCChhhHH
Q 008096          174 NWYYFVMGAAVLVAVTVLVYI--QDNV-------------GWNWGLGIPTVAMFLSIIAFVFGYPLYRNLNPAGSPFVRL  238 (577)
Q Consensus       174 ~~~~~~~~ig~~lg~~i~~~l--~~~~-------------gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (577)
                      ++.+...++|+++|+.++++.  .+.+             +.+..|++.++..++..++..+..+|.+..++++. .++ 
T Consensus       155 ~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~~~~~~-~~~-  232 (477)
T TIGR01301       155 AYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENPLIGSDDF-INS-  232 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccCCCccccc-hhh-
Confidence            999999999999999988864  2111             56788988888777766665555444322111100 000 


Q ss_pred             HHHHHHHHhhccccCCCCCcccccccchhhhhhcCCcccccccchhhhhhhhccccccCCCCCcccccchhhhhhh-hhh
Q 008096          239 MQVCVAAFRKRNLDMVSDPNVLYQNEELDASICLDGKLLHTKHMKFLDKAAIVTEEDDIKSPNLWRLNTVHRVEEL-KSV  317 (577)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-k~~  317 (577)
                                 +  ..+       .++            + +.                  ...++... +...+. |.+
T Consensus       233 -----------~--~~~-------~~~------------~-~~------------------~~~~~~i~-~~~~~mP~~m  260 (477)
T TIGR01301       233 -----------E--AAP-------PSK------------H-GE------------------EAFFGELF-GAFKYLPRPV  260 (477)
T ss_pred             -----------h--ccc-------ccc------------c-ch------------------hhhHHHHH-HHHHHCCHHH
Confidence                       0  000       000            0 00                  00000000 000000 111


Q ss_pred             hhhhhHHHHHHHHHHHhhccceeEEeecccc-ccccccccccccchhhhhhHHHHHHHHHhhhhhhhhccccccCCCCCC
Q 008096          318 IRMGPIWASGILLITAYAQQGTFSLQQAKSM-DRHLTKSFQIPAGSMSVFTMVSMLSTIALYDRIIIPVARKFTGLDRGI  396 (577)
Q Consensus       318 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~  396 (577)
                      .+.+...++...-|..+....+.+..+..+- +..-...++. ..-..+...+...+...+.+.++.++.+|+++|++  
T Consensus       261 ~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~-gvr~G~~~l~~~s~~~~i~s~~l~~l~~~~g~~k~--  337 (477)
T TIGR01301       261 WILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDD-GVRAGAFGLMLNSVVLGITSIGMEKLCRGWGAGKR--  337 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchh--
Confidence            1122222222222222222222211111000 0000001111 10112222222222222444445557777664322  


Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCC--ccccch-hhHHHHHHHHHHHHHHHHhhhhhhhhhccc
Q 008096          397 TFLHRMGIGFVISVLATLVAGFVEMKRKQAALAHGLVDKPH--IIIPIS-VLWLVPQYSLHGIAEAFMSVGHLEFLYDQA  473 (577)
Q Consensus       397 ~~~~~~~ig~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~l~~~~~l~gi~~~~~~~~~~~~v~~~~  473 (577)
                          .-.++.++.++++....+..    ..+.+....|.+.  ...+.. .+..+..+.+.|+.....+...++++.+..
T Consensus       338 ----~~~~s~~~~~~~l~~~~~i~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Gi~~A~~~siPfal~s~~~  409 (477)
T TIGR01301       338 ----LWGIVNIILAICLAATVLVT----YVAKNSRYYDGDGESLPPPTGIKASALIVFAILGIPLAITYSIPFALASIRS  409 (477)
T ss_pred             ----HHHHHHHHHHHHHHHHHHHH----hhhhccccccccccccCcchhhHHHHHHHHHHhhHHHHHHHHHhHHHHHHHc
Confidence                13667777777776666554    1111000011000  111112 255566778899999999999999999999


Q ss_pred             Cc--ccHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhhhhhcc
Q 008096          474 PE--SMRSTATALFWTANSIGNYVSTLLVTLVHKFSAGPNGSNWLPDNNLNKGKLEYFYWLITLLQVVNVIYYFFCAKIY  551 (577)
Q Consensus       474 P~--~~rg~~~gi~~~~~~lg~~l~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  551 (577)
                      |+  +..|..+|+.|++-.+...+..+..|.+.+..+++               ..+.+.+-++.++++++..++..|+.
T Consensus       410 ~~~~~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~~---------------~~~~~~~~gv~~~~aa~~~~~~~~~~  474 (477)
T TIGR01301       410 SNLGAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGG---------------NLPAFVVGAVAAFVSGLLALILLPRP  474 (477)
T ss_pred             cccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCC---------------CeeHHHHHHHHHHHHHHHHHHhCCCC
Confidence            95  55699999999999999999998888865555321               13446777777888888887777754

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>PRK10429 melibiose:sodium symporter; Provisional

Probab=99.80  E-value=4e-17  Score=177.29  Aligned_cols=364  Identities=10%  Similarity=0.026  Sum_probs=209.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhHhhhhchhhhhhhhh----hccch-hHHHHHHHHHHHHHH
Q 008096           24 ANEVCEKLAVVGFHANMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVAD----TYAGR-FWTITVASIIYQIGM   98 (577)
Q Consensus        24 ~~~~~~~~~~~~~~~~l~~~l~~~lg~s~~~~~~i~~~~~~~~~~~~~~~G~laD----r~~Gr-k~~~~~~~~~~~i~~   98 (577)
                      ..++..++....+.++++.|+++.+|+|..++|.+..+.-+..++..|+.|+++|    || || |+.+.++.+..+++.
T Consensus        13 ~g~~~~~~~~~~~~~~l~~yyt~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~-Grrrp~il~g~i~~~i~~   91 (473)
T PRK10429         13 FGAFGKDFAIGIVYMYLMYYYTDVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRW-GKFKPWILIGTLANSVVL   91 (473)
T ss_pred             cchhHHhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCC-CCcchhHhhhhHHHHHHH
Confidence            3566677778888899999999999999999999999999999999999999999    66 77 566777777777776


Q ss_pred             HHHHHhhhcCCCCCCCCCCCCcccccccchhHHHHHHHHHHHhccCCcccchhhhhhccCCC-CCchhhhhhhhhhhHHH
Q 008096           99 FSLTLSAILPQLRPPPCQGDQVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDE-TDPKQATKTWKYFNWYY  177 (577)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~-~~~~~~~~r~~~~~~~~  177 (577)
                      .++....+.+                .+.....+++..++.+++.........++.+|+.++ +|      |.+..++-.
T Consensus        92 ~llf~~p~~~----------------~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~e------R~~l~~~~~  149 (473)
T PRK10429         92 FLLFSAHLFE----------------GTAQYVFVCVTYILWGMTYTIMDIPFWSLVPTLTLDKRE------REQLVPYPR  149 (473)
T ss_pred             HHHHcCCCCC----------------ccHHHHHHHHHHHHHHHHHHHHcchHHhhhHHhCCCHHH------HHHHHHHHH
Confidence            5554221010                011233455556677888888899999999999864 34      788888767


Q ss_pred             HHHHHHHHHHHHHHHhhcc-------cccchhhhHHHHHHHHHHHHHHHHccccccccCCCCChhhHHHHHHHHHHhhcc
Q 008096          178 FVMGAAVLVAVTVLVYIQD-------NVGWNWGLGIPTVAMFLSIIAFVFGYPLYRNLNPAGSPFVRLMQVCVAAFRKRN  250 (577)
Q Consensus       178 ~~~~ig~~lg~~i~~~l~~-------~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (577)
                      ...++|+.+.+.+...+..       ..+|+....+.++..++..++.+...++... ++..++.               
T Consensus       150 ~~~~ig~~~~~~~~~~~~~~~g~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~e~~~-~~~~~~~---------------  213 (473)
T PRK10429        150 FFASLAGFVTAGFTLPFVNYVGGGDRGFGFQMFTLVLIAFFIVSTIITLRNVHEVYS-SDNQVSA---------------  213 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHHcCceecCC-ccccccc---------------
Confidence            7777776666555433221       1245555555544444433333332222100 0000000               


Q ss_pred             ccCCCCCcccccccchhhhhhcCCcccccccchhhhhhhhccccccCCCCCcccccchhhhhhhhhhhhhhhHHHHHHHH
Q 008096          251 LDMVSDPNVLYQNEELDASICLDGKLLHTKHMKFLDKAAIVTEEDDIKSPNLWRLNTVHRVEELKSVIRMGPIWASGILL  330 (577)
Q Consensus       251 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~l~~~~~~~  330 (577)
                          ++                                          .+.+++.. .+...+.|.+...+...+.....
T Consensus       214 ----~~------------------------------------------~~~~~~~~-~~~~~~n~~~~~ll~~~~~~~~~  246 (473)
T PRK10429        214 ----EG------------------------------------------SHLTLKDI-VALIYKNDQLSCLLGMALAYNIA  246 (473)
T ss_pred             ----cc------------------------------------------cCCCHHHH-HHHHhcCHHHHHHHHHHHHHHHH
Confidence                00                                          00000000 00011112222222221111111


Q ss_pred             HHHhhccceeEEeeccccccccccccccccchhhhhhHHHHHHHHHhhhhhhhhccccccCCCCCCCchhHHHHHHHHHH
Q 008096          331 ITAYAQQGTFSLQQAKSMDRHLTKSFQIPAGSMSVFTMVSMLSTIALYDRIIIPVARKFTGLDRGITFLHRMGIGFVISV  410 (577)
Q Consensus       331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ig~~~~~  410 (577)
                      .........++...... +.       ...+.+.....+..+++.++.    .++.+|+++|+.       +.++.++..
T Consensus       247 ~~~~~~~~~y~~~y~~~-~~-------~~~~~~~~~~~i~~ii~~~~~----~~l~~r~gkk~~-------~~~~~~~~~  307 (473)
T PRK10429        247 SNIINGFAIYYFTYVIG-DA-------DLFPYYLSYAGAANLVTLILF----PRLVKSLSRRIL-------WAGASIFPV  307 (473)
T ss_pred             HHHHhhheeeEEEEECC-CH-------HHHHHHHHHHHHHHHHHHHHH----HHHHHHcCcHHH-------HHHHHHHHH
Confidence            11121122222211111 00       011223333444455555654    447777765542       555665555


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCCCCccccchhhHHHHHHHHHHHHHHHHhhhhhhhhhcccC-------cccHHHHHH
Q 008096          411 LATLVAGFVEMKRKQAALAHGLVDKPHIIIPISVLWLVPQYSLHGIAEAFMSVGHLEFLYDQAP-------ESMRSTATA  483 (577)
Q Consensus       411 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~gi~~~~~~~~~~~~v~~~~P-------~~~rg~~~g  483 (577)
                      ++.+.......                 ..+.+.+.+++..++.+++.+...+..++++.|..+       ++..|...|
T Consensus       308 ~~~~~~~~~~~-----------------~~~~~~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s  370 (473)
T PRK10429        308 LSCGVLLLMGL-----------------AAPHNALLIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYS  370 (473)
T ss_pred             HHHHHHHHHhc-----------------cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHH
Confidence            44443332110                 001234445556677888999898999999999876       455677889


Q ss_pred             HHHHHHhHHHHHHHHHHHHHhhhcCC
Q 008096          484 LFWTANSIGNYVSTLLVTLVHKFSAG  509 (577)
Q Consensus       484 i~~~~~~lg~~l~~~i~~~v~~~~~~  509 (577)
                      ...+...+|..+++.+.+.+.+..+.
T Consensus       371 ~~~~~~K~~~al~~~i~g~~l~~~Gy  396 (473)
T PRK10429        371 VQTMVVKGGSAFAAFFIGVVLGLIGY  396 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            99999999999999999998876643

>PRK09848 glucuronide transporter; Provisional

Probab=99.79  E-value=7.5e-17  Score=173.95  Aligned_cols=358  Identities=10%  Similarity=0.049  Sum_probs=195.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhHhhhhchhhhhhhhhhc---cchhHHH-HHHHHHHHHHHH
Q 008096           24 ANEVCEKLAVVGFHANMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADTY---AGRFWTI-TVASIIYQIGMF   99 (577)
Q Consensus        24 ~~~~~~~~~~~~~~~~l~~~l~~~lg~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~---~Grk~~~-~~~~~~~~i~~~   99 (577)
                      ..++..++......++++.|+++.+|++..++|.+.+...+...+..++.|+++||.   +||||.. .++.+...+...
T Consensus        15 ~g~~~~~~~~~~~~~~l~~y~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~~   94 (448)
T PRK09848         15 LGDVANNFAFAMGALFLLSYYTDVAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSV   94 (448)
T ss_pred             cchHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHHH
Confidence            366677777777888889999999999999999999999999999999999999995   2666644 555554544444


Q ss_pred             HHHHhhhcCCCCCCCCCCCCcccccccchhHHHHHHHHHHHhccCCcccchhhhhhccCCCCCchhhhhhhhhhhHHHHH
Q 008096          100 SLTLSAILPQLRPPPCQGDQVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFV  179 (577)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  179 (577)
                      ++. ..  |...            .........++..++.+++.+...+...++..++.++.++     |.+..++-.++
T Consensus        95 ~~~-~~--~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~-----r~~~~~~r~~~  154 (448)
T PRK09848         95 LVF-WV--PTDW------------SHSSKVVYAYLTYMGLGLCYSLVNIPYGSLATAMTQQPQS-----RARLGAARGIA  154 (448)
T ss_pred             HHH-hC--cCCC------------CcchHHHHHHHHHHHHHHHHHHhcccHhhhhhhhcCCHHH-----HHHHHHHHHHH
Confidence            332 11  1100            0011233345556677888888888888888888776431     55555554433


Q ss_pred             -----HHHHHHHHHHHHHhhcccccchhhhHHHHHHHHHHHHHHHHccccccccCCCCChhhHHHHHHHHHHhhccccCC
Q 008096          180 -----MGAAVLVAVTVLVYIQDNVGWNWGLGIPTVAMFLSIIAFVFGYPLYRNLNPAGSPFVRLMQVCVAAFRKRNLDMV  254 (577)
Q Consensus       180 -----~~ig~~lg~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (577)
                           ..++..++|++.+.........+..+. .+..+++.++.+......++..+.+++.....+.             
T Consensus       155 ~~~~~~~~~~~~~p~i~~~~g~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~e~~~~~~~~~~~~~~-------------  220 (448)
T PRK09848        155 ASLTFVCLAFLIGPSIKNSSPEEMVSVYHFWT-IVLAIAGMVLYFICFKSTRENVVRIVAQPSLKIS-------------  220 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCchhhhHHHHH-HHHHHHHHHHHHHHHcCcEeccCCCccCCCHHHH-------------
Confidence                 345666666665543221111111111 1112222222222111111100000000000000             


Q ss_pred             CCCcccccccchhhhhhcCCcccccccchhhhhhhhccccccCCCCCcccccchhhhhhhhhhhhhhh-HHHHHHHHHHH
Q 008096          255 SDPNVLYQNEELDASICLDGKLLHTKHMKFLDKAAIVTEEDDIKSPNLWRLNTVHRVEELKSVIRMGP-IWASGILLITA  333 (577)
Q Consensus       255 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~-l~~~~~~~~~~  333 (577)
                                                                      +     +.....|.+..... .++....+.. 
T Consensus       221 ------------------------------------------------~-----~~l~~n~~f~~~~~~~~~~~~~~~~-  246 (448)
T PRK09848        221 ------------------------------------------------L-----QTLKRNRPLFMLCIGALCVLISTFA-  246 (448)
T ss_pred             ------------------------------------------------H-----HHHhCCchHHHHHHHHHHHHHHHHH-
Confidence                                                            0     00111122211111 1111111111 


Q ss_pred             hhccceeEEeeccccccccccccccccchhhhhh-HHHHHHHHHhhhhhhhhccccccCCCCCCCchhHHHHHHHHHHHH
Q 008096          334 YAQQGTFSLQQAKSMDRHLTKSFQIPAGSMSVFT-MVSMLSTIALYDRIIIPVARKFTGLDRGITFLHRMGIGFVISVLA  412 (577)
Q Consensus       334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ig~~~~~l~  412 (577)
                      ......++....      .  +.+.....+...+ .+..++..++.+    ++.+|+++|+       .+.+|.++..++
T Consensus       247 ~~~~~~~~~~~~------~--g~~~~~~~~~~~~~~~~~~~~~~l~~----~l~~r~g~~~-------~~~~g~~~~~i~  307 (448)
T PRK09848        247 VSASSLFYVRYV------L--NDTGLFTVLVLVQNLVGTVASAPLVP----GMVARIGKKN-------TFLIGALLGTCG  307 (448)
T ss_pred             HhhhheeeEeee------c--CChHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhCcHH-------HHHHHHHHHHHH
Confidence            111112222111      1  1000011111122 233444555544    4666665433       267787777777


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCCCCccccchhhHHHHHHHHHHHHHHHHhhhhhhhhhcccCcc-------cHHHHHHHH
Q 008096          413 TLVAGFVEMKRKQAALAHGLVDKPHIIIPISVLWLVPQYSLHGIAEAFMSVGHLEFLYDQAPES-------MRSTATALF  485 (577)
Q Consensus       413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~gi~~~~~~~~~~~~v~~~~P~~-------~rg~~~gi~  485 (577)
                      +++..+..                    ..+.+..+...++.++|++...+..++...|..|++       .+|.+.|+.
T Consensus       308 ~~~~~~~~--------------------~~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~  367 (448)
T PRK09848        308 YLLFFWVS--------------------VWSLPVALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLF  367 (448)
T ss_pred             HHHHHHcC--------------------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHH
Confidence            65554322                    124445555667789999999999999999988754       469999999


Q ss_pred             HHHHhHHHHHHHHHHHHHhhhcC
Q 008096          486 WTANSIGNYVSTLLVTLVHKFSA  508 (577)
Q Consensus       486 ~~~~~lg~~l~~~i~~~v~~~~~  508 (577)
                      ++.+.+|..+++.+.+.+.+..+
T Consensus       368 ~~~~klg~aig~~i~g~~l~~~G  390 (448)
T PRK09848        368 SFTRKCGQAIGGSIPAFILGLSG  390 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcC
Confidence            99999999999999999877653

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=99.79  E-value=4e-17  Score=179.53  Aligned_cols=140  Identities=14%  Similarity=0.064  Sum_probs=127.9

Q ss_pred             HhcCCChHHHHHHHHHHhHhhhhchhhhhhhhhhccchhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCcccccc
Q 008096           46 TQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADTYAGRFWTITVASIIYQIGMFSLTLSAILPQLRPPPCQGDQVCKEAD  125 (577)
Q Consensus        46 ~~lg~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  125 (577)
                      +..+.+.....+..+.+.++..+++++.|.++||+ |||+++.+++++..++.++.+++.                    
T Consensus       111 ~~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~-GRk~~~~~~~~~~~i~~~~~a~a~--------------------  169 (521)
T KOG0255|consen  111 NLVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRF-GRKPVLLVSLLLFIIFGILTAFAP--------------------  169 (521)
T ss_pred             ceeeCcHhHHHHHHHHHHHHHHHHHhhheehHhhc-ccHHHHHHHHHHHHHHHHHHHHhC--------------------
Confidence            56678899999999999999999999999999997 999999999999999999999987                    


Q ss_pred             cchhHHHHHHHHHHHhccCCcccchhhhhhccCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhcccccchhhhH
Q 008096          126 TGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAVLVAVTVLVYIQDNVGWNWGLG  205 (577)
Q Consensus       126 ~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~lg~~i~~~l~~~~gw~~~f~  205 (577)
                        +++.+++.|++.|++.++...+...+++|+++++.      |+.+..+ ......++.+++.+++++..  +||+.++
T Consensus       170 --~~~~~~~~Rfl~G~~~~~~~~~~~~~~~E~~~~~~------R~~~~~~-~~~~~~~~~~~~~~~a~~~~--~Wr~~~~  238 (521)
T KOG0255|consen  170 --NYWMFLIFRFLSGFFGSGPLTVGFGLVAEIVSPKQ------RGLALTL-GGFFFVGGLMLPAGAAYITR--DWRWLFW  238 (521)
T ss_pred             --cHHHHHHHHHHHHhhccchhHHhHhhheeecCcch------hhHHHHH-HHHHHHHHHHHHHHHHHHHh--hHHHHHH
Confidence              88889999999999999999999999999999988      9999999 78888888999999999886  7999999


Q ss_pred             HHHHHHHHHHHH
Q 008096          206 IPTVAMFLSIIA  217 (577)
Q Consensus       206 ~~~~~~~~~~~~  217 (577)
                      +..+..++.++.
T Consensus       239 ~~~~~~~~~~~~  250 (521)
T KOG0255|consen  239 IISIPSGLFLLL  250 (521)
T ss_pred             HHHHHHHHHHHH
Confidence            988776655555

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=99.79  E-value=2.9e-18  Score=175.13  Aligned_cols=448  Identities=12%  Similarity=0.010  Sum_probs=241.3

Q ss_pred             CcceehHHHHHHHH---HHHHHHHHHHHHHHHHHHhcC-------CChHHHHHHHHHHhHhhhhchhhhhhhhhhccchh
Q 008096           15 GIITMPFIFANEVC---EKLAVVGFHANMISYLTTQLH-------MPLTKAANTLTNFGGTGSLTPLIGAFVADTYAGRF   84 (577)
Q Consensus        15 ~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~l~~~lg-------~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grk   84 (577)
                      .|+.+..++...+.   +....+.+....+.+-....|       ++....+.+..+..++..++|++.|+++||+ |||
T Consensus        36 qw~~fk~i~iAG~GfftDsYDlF~I~lVt~il~~lY~~~~~~~g~~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~-GRK  114 (538)
T KOG0252|consen   36 QWKHFKAIIIAGMGFFTDSYDLFSISLVTKILGYLYYHGDESGGHYPSGVLALVNAAALVGTIFGQLFFGWLGDKF-GRK  114 (538)
T ss_pred             hHHHHHHHHHhhhhhcccchhhhhHHHHHHHHHHHhcCCCCCCCcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhh-cch
Confidence            67777776663333   333334444444433322322       6677888999999999999999999999998 999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCcccccccchhHHHHHHHHHHHhccCCcccchhhhhhccCCCCCch
Q 008096           85 WTITVASIIYQIGMFSLTLSAILPQLRPPPCQGDQVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPK  164 (577)
Q Consensus        85 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~  164 (577)
                      +++-..++++.+++++++++.               |......-++.+...|+++|+|.|+-+|...+..+|..-.+.  
T Consensus       115 ~vYG~~liImIi~t~~~~~s~---------------~~~~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~--  177 (538)
T KOG0252|consen  115 KVYGKELIIMIICSALSGLSV---------------GTTSPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKKT--  177 (538)
T ss_pred             hhhhHHHHHHHHHHHHhccCC---------------CCCCCcchhhHHHHHHHHhhccccCCCcchHHHhhhhhhhcc--
Confidence            999999999999999777543               112222467788899999999999999999999999776655  


Q ss_pred             hhhhhhhhhhH----HHHHHHHHHHHHHHHHHhhccc-----------ccchhhhHHHHHHHHHHHHHHHHccccccccC
Q 008096          165 QATKTWKYFNW----YYFVMGAAVLVAVTVLVYIQDN-----------VGWNWGLGIPTVAMFLSIIAFVFGYPLYRNLN  229 (577)
Q Consensus       165 ~~~~r~~~~~~----~~~~~~ig~~lg~~i~~~l~~~-----------~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~  229 (577)
                          |+...+.    ..++.-.|++++-++.+-+-..           .=||..|.+.++..++.++.      |....+
T Consensus       178 ----RGa~iaavFa~Qg~GilaG~ivt~Iv~~~fe~~~~~~~~~~~ld~vWRl~~glg~vpa~~~ly~------Rl~M~E  247 (538)
T KOG0252|consen  178 ----RGAFIAAVFAMQGFGILAGGIVALIVSAIFEKIFNGPSTYPHLDGVWRIIFGLGAVPALLVLYF------RLKMPE  247 (538)
T ss_pred             ----ccceeEEEEEecchhHhhccHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHh------hhcCCc
Confidence                6666555    4444555555555554433221           13898887777654433221      111111


Q ss_pred             CCCChhhHHH-HHHHHHHhhccccCCCCCcccccccchhhhhhcCCcccccccchhhhhhhhccccccCCCCCcccccch
Q 008096          230 PAGSPFVRLM-QVCVAAFRKRNLDMVSDPNVLYQNEELDASICLDGKLLHTKHMKFLDKAAIVTEEDDIKSPNLWRLNTV  308 (577)
Q Consensus       230 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  308 (577)
                      ++  ..+.+. +....+..+. .+.. +.  -++.++     +                .   ..  +...+..++-+..
T Consensus       248 t~--~Y~al~~~~~~~a~~d~-~k~~-~~--~~~~~~-----~----------------~---~~--~~~~~~~~~~~F~  295 (538)
T KOG0252|consen  248 TA--RYTALVSKKLKQAAGDM-KKVL-SV--DIEAES-----T----------------A---ES--DVPPPSNSFGLFS  295 (538)
T ss_pred             ch--hHHHHhhcCHhhhhhcc-cccc-cc--ccchhh-----c----------------c---cc--CCCCcccccchHH
Confidence            10  000000 0000000000 0000 00  000000     0                0   00  0011111111111


Q ss_pred             hhhhhhhhhhhhhhHHHHHHHHHHHhhccceeEEeeccccccccc-cccccc-cchhhhhhHHHHHHHHHh-hhhhhhhc
Q 008096          309 HRVEELKSVIRMGPIWASGILLITAYAQQGTFSLQQAKSMDRHLT-KSFQIP-AGSMSVFTMVSMLSTIAL-YDRIIIPV  385 (577)
Q Consensus       309 ~~~~~~k~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~  385 (577)
                      +...+   . .-.-++.+...|+..........+.|...++...- ++-... .....+........++.+ .-++..-+
T Consensus       296 ~~f~~---~-hg~~Llgt~~~WFllDiafy~~nL~~s~I~~~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~  371 (538)
T KOG0252|consen  296 RLFLR---W-HGKHLLGTAGTWFLLDIAFYGQNLFQSVIFSAIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYF  371 (538)
T ss_pred             HHHHH---H-HHHHHHHHHHHHHhhhhhhhccccHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEE
Confidence            10001   1 11122233333333332222222333222221000 000000 000111111222222222 22333345


Q ss_pred             cccccCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccccchhhHHHHHHHHHHHHHHHHhhhh
Q 008096          386 ARKFTGLDRGITFLHRMGIGFVISVLATLVAGFVEMKRKQAALAHGLVDKPHIIIPISVLWLVPQYSLHGIAEAFMSVGH  465 (577)
Q Consensus       386 ~~r~~~~~~~~~~~~~~~ig~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~gi~~~~~~~~~  465 (577)
                      .|+++||..       .+.|+.++.+.+++++..-        .+ +       . ...-.++..-+...+++-.-+.+.
T Consensus       372 id~iGRk~i-------q~~GF~~~~i~~~~~~~~y--------~~-~-------~-~~~Gf~v~y~l~~ff~NFGPn~tt  427 (538)
T KOG0252|consen  372 IDIIGRKYI-------QLMGFFIMTIFFFVIAGPY--------NQ-L-------E-NTIGFVVLYSLTFFFGNFGPNATT  427 (538)
T ss_pred             eehhhhHHH-------HHhhHHHHHHHHHHHcCCc--------cc-c-------c-ccCceeehHHHHHHHHhcCCCcee
Confidence            677776553       6778888877766665432        00 0       0 011111222233334555556667


Q ss_pred             hhhhhcccCcccHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHh
Q 008096          466 LEFLYDQAPESMRSTATALFWTANSIGNYVSTLLVTLVHKFSAGPNGSNWLPDNNLNKGKLEYFYWLITLLQVVNVIYYF  545 (577)
Q Consensus       466 ~~~v~~~~P~~~rg~~~gi~~~~~~lg~~l~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  545 (577)
                      ..+.+|.+|.+.||++-|+...++-.|+.++........+..       +.+     ..+..+.++.++++.+++.++.+
T Consensus       428 fivpaE~FParvR~t~hGIsAA~GK~GAivg~~~F~~~t~~~-------yp~-----~~g~~~v~~i~~~~~~~gi~~T~  495 (538)
T KOG0252|consen  428 FIVPAEIFPARVRSTCHGISAASGKAGAIVGAFGFLYLTDHN-------YPP-----NIGVRNVFIILAGCMLLGILFTL  495 (538)
T ss_pred             EEeehhhchHHHhhhhhhHHHHhccchHHHHHHHhhHhhhcc-------CCc-----cccchHHHHHHHHHHHHhHheeE
Confidence            778999999999999999999999999999999877764421       111     23456778999999999988888


Q ss_pred             hhhhccccccccccccCC
Q 008096          546 FCAKIYTFKPIQMHQKGG  563 (577)
Q Consensus       546 ~~~~~~~~~~~~~~~~~~  563 (577)
                      ++. |.|++..+|.+.+.
T Consensus       496 l~p-Etk~~~leei~~e~  512 (538)
T KOG0252|consen  496 LIP-ETKGKSLEEISNEE  512 (538)
T ss_pred             Eee-cccccCHHHhcChh
Confidence            765 99999988875443

>PRK09669 putative symporter YagG; Provisional

Probab=99.78  E-value=8.4e-17  Score=173.40  Aligned_cols=172  Identities=9%  Similarity=0.076  Sum_probs=122.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhHhhhhchhhhhhhhhh----ccch-hHHHHHHHHHHHHHH
Q 008096           24 ANEVCEKLAVVGFHANMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADT----YAGR-FWTITVASIIYQIGM   98 (577)
Q Consensus        24 ~~~~~~~~~~~~~~~~l~~~l~~~lg~s~~~~~~i~~~~~~~~~~~~~~~G~laDr----~~Gr-k~~~~~~~~~~~i~~   98 (577)
                      ..++..++....+..+++.|+++.+|+|..++|.+..+.-+..++..|+.|+++||    + || |+.+..+.+..+++.
T Consensus        16 ~g~~~~~~~~~~~~~~l~~~~t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~-Grrrp~il~~~~~~~i~~   94 (444)
T PRK09669         16 LGDTACNLVWQTVMLFLAYFYTDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRH-GQFRPYLLWFAIPFGVVC   94 (444)
T ss_pred             chhhhhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCC-CCcchhHHHHHHHHHHHH
Confidence            35566677777778899999999999999999999999999999999999999999    5 76 455667777777766


Q ss_pred             HHHHHhhhcCCCCCCCCCCCCcccccccchhHHHHHHHHHHHhccCCcccchhhhhhccCCCCCchhhhhhhhhhhHHHH
Q 008096           99 FSLTLSAILPQLRPPPCQGDQVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYF  178 (577)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~  178 (577)
                      +++....+.+                .......+++..++.+.+..+......++.+|+.++.+     +|.+..++...
T Consensus        95 ~l~f~~p~~~----------------~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~~t~~~~-----eR~~l~~~r~~  153 (444)
T PRK09669         95 LLTFYTPDFG----------------ATGKIIYACVTYILLSLVYTAINVPYCAMPGAITNDPR-----ERHSLQSWRFA  153 (444)
T ss_pred             HHHHhCCCCC----------------cchHHHHHHHHHHHHHHHHHhhcchHHHhHHHhcCCHH-----HHHHHHHHHHH
Confidence            5544322110                11234555666666777777788888899999886532     17777888777


Q ss_pred             HHHHHHHHHHHHHHhhcc-------cccchhhhHHHHHHHHHHHHH
Q 008096          179 VMGAAVLVAVTVLVYIQD-------NVGWNWGLGIPTVAMFLSIIA  217 (577)
Q Consensus       179 ~~~ig~~lg~~i~~~l~~-------~~gw~~~f~~~~~~~~~~~~~  217 (577)
                      ..++|..+++.+...+..       ..||+..+.+.+++.++..++
T Consensus       154 ~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~~ii~~v~~~~  199 (444)
T PRK09669        154 LSFIGGLIVSVIALPLVDILGKGDEQKGYFYAMMVMGLLGVVLFFC  199 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHH
Confidence            788887777665433222       246777776666555444433

>TIGR00788 fbt folate/biopterin transporter

Probab=99.78  E-value=8.3e-17  Score=174.20  Aligned_cols=386  Identities=15%  Similarity=0.131  Sum_probs=222.8

Q ss_pred             CCCcceehHHHH-HHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhHhhhhchhhhhhhhhhccc-----hhHH
Q 008096           13 KGGIITMPFIFA-NEVCEKLAVVGFHANMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADTYAG-----RFWT   86 (577)
Q Consensus        13 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~l~~~lg~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~G-----rk~~   86 (577)
                      ..+++..+.+++ ..+...+. +.+...++.++.+++|+|.++.+...+...+...+.++ .|.++||+ +     ||+.
T Consensus        21 ~~~~~~~~~~~~~~y~~qGl~-~l~~~~~~~~l~~~lg~s~~~i~~~~sl~~lpw~~K~l-~g~l~D~~-~i~G~rRr~~   97 (468)
T TIGR00788        21 SFHPRVVLAIGLQVLFVKGIA-GLMRLPLSPMLTDDLGLDGARYQRLVGLSSLGWALKPF-AGVMSDTF-PLFGYTKRWY   97 (468)
T ss_pred             cCCcchHHHHHHHHHHHhhHH-HHhhhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHhc-CCCCccchHH
Confidence            334444444444 77888887 88888899999999999999999999999999999766 99999998 7     7777


Q ss_pred             HHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCcccccccchhHHHHHHHHHHHhccCCcccchhhhhhccCCCCCchhh
Q 008096           87 ITVASIIYQIGMFSLTLSAILPQLRPPPCQGDQVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQA  166 (577)
Q Consensus        87 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~  166 (577)
                      +.++.++.. ......++.  +                 +.......+.+++.+++.+..-.+..++..|..+ ++++. 
T Consensus        98 l~~~~~l~~-~~~~~~l~~--~-----------------~~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~~-  155 (468)
T TIGR00788        98 LVLSGLLGS-AILYGLLPG--K-----------------VSSAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESPSA-  155 (468)
T ss_pred             HHHHHHHHH-HHHHHhccc--c-----------------cchHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCCc-
Confidence            777766553 122222221  0                 0123334457888999999999999999999999 44222 


Q ss_pred             hhhhhhhhHHHHHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHHHHHHHHHccccccc-cCCCCChhhHHHHHHHHH
Q 008096          167 TKTWKYFNWYYFVMGAAVLVAVTVLVYIQDNVGWNWGLGIPTVAMFLSIIAFVFGYPLYRN-LNPAGSPFVRLMQVCVAA  245 (577)
Q Consensus       167 ~~r~~~~~~~~~~~~ig~~lg~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  245 (577)
                        ++...+..+...++|.++|+.++|.+.+.++|+..|++.+...++..+...+..++ ++ ..|+.++...        
T Consensus       156 --~~~~~s~~~~~~~~G~~vg~~l~G~l~~~~~~~~~f~~~a~l~ll~~~~~~~~~E~-~~~~~~~~~~~~~--------  224 (468)
T TIGR00788       156 --GPSLVSWMWGASATGGLISSLLGGPLLDKTLTRILFLITAALLLLQLFVSNLSKER-RAFVRPRIGTYLE--------  224 (468)
T ss_pred             --CCCeeeHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhcccc-cccccccccccch--------
Confidence              44556666667789999999999999998999999998887776664443333221 10 1111000000        


Q ss_pred             HhhccccCCCCCcccccccchhhhhhcCCcccccccchhhhhhhhccccccCCCCCcccccchhhhhhhhhhhhhhhHHH
Q 008096          246 FRKRNLDMVSDPNVLYQNEELDASICLDGKLLHTKHMKFLDKAAIVTEEDDIKSPNLWRLNTVHRVEELKSVIRMGPIWA  325 (577)
Q Consensus       246 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~l~~  325 (577)
                                    .+....               .....+..   ++    .....|      ....++.+...+.+  
T Consensus       225 --------------~~~~~~---------------~~~~~~~~---~~----~~~~l~------~~l~~~~i~~~l~f--  260 (468)
T TIGR00788       225 --------------MNMALL---------------TLGVLANV---KV----QILGLR------GAIQLLEIAKPLIF--  260 (468)
T ss_pred             --------------hhhhhh---------------hhhHHHHH---HH----HHHHHH------HHHhcHHHHHHHHH--
Confidence                          000000               00000000   00    000000      00011111111111  


Q ss_pred             HHHHHHHHhhcc-ceeEEeeccccccccccccc-cccchhhhhhHHHHHHHHHhhhhhhhhccccccCCCCCCCchhHHH
Q 008096          326 SGILLITAYAQQ-GTFSLQQAKSMDRHLTKSFQ-IPAGSMSVFTMVSMLSTIALYDRIIIPVARKFTGLDRGITFLHRMG  403 (577)
Q Consensus       326 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~  403 (577)
                       ..+.+...... ...+.....    .+  +++ ...+.......+..+++..+.++    +.+|+       +..+.+.
T Consensus       261 -ifl~~~~~~~~~~~~f~~~~~----~l--G~s~~~~G~~~~~~~v~~i~g~~~~~~----~~~~~-------~~r~~l~  322 (468)
T TIGR00788       261 -IFLSYANLPGASGSVFCATTQ----CL--PGGPSFSGMSKVVGNLGSLCGVGGYDR----FLKTF-------PYRLLFG  322 (468)
T ss_pred             -HHHHHhhcCCCCceeEEEEcc----cC--CCCcchhhhHHHHHHHHHHHHHHHHHH----HHhhC-------CHHHHHH
Confidence             11101111111 122222111    12  111 12333344444555555555444    44443       2333366


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccccchhhHHHHHHHHHHHHHHHHhhhhhhhhhcccCcccHHHHHH
Q 008096          404 IGFVISVLATLVAGFVEMKRKQAALAHGLVDKPHIIIPISVLWLVPQYSLHGIAEAFMSVGHLEFLYDQAPESMRSTATA  483 (577)
Q Consensus       404 ig~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~gi~~~~~~~~~~~~v~~~~P~~~rg~~~g  483 (577)
                      ++.++.+++.+...... +  .++...+         ..+.+.+....++.+++.++...+...++.+..|++.+|+..|
T Consensus       323 ~~~~l~~~~~~~~~~l~-~--~~~~~~g---------i~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~p~~~egt~~a  390 (468)
T TIGR00788       323 VTTLLYTLSSLFDLILV-K--RWNLAFG---------ISDEVFVLGDSIIAEVLAQLKFMPFLVLLARLCPSGCESSVFA  390 (468)
T ss_pred             HHHHHHHHHHhCceeee-e--ccccccC---------CCCeeeeeehhHHHHHHHHHHHccHHHHHHHhCCCCceehHHH
Confidence            66666655543321110 0  0110000         0122344455677888888888889999999999999999999


Q ss_pred             HHHHHHhHHHHHHHHHHHHHhhhcC
Q 008096          484 LFWTANSIGNYVSTLLVTLVHKFSA  508 (577)
Q Consensus       484 i~~~~~~lg~~l~~~i~~~v~~~~~  508 (577)
                      +.+...++|..+++.+.+.+.+..+
T Consensus       391 l~~s~~~lg~~v~~~~gg~l~~~~g  415 (468)
T TIGR00788       391 LLASILHLGSSVSGFLGVLLMETIG  415 (468)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            9999999999999999998877663

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>TIGR00806 rfc RFC reduced folate carrier

Probab=99.78  E-value=2.1e-17  Score=172.90  Aligned_cols=177  Identities=8%  Similarity=-0.022  Sum_probs=149.2

Q ss_pred             CCcceehHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHH-HHHHHHHHhHhhhhchhhhhhhhhhccchhHHHHHHHH
Q 008096           14 GGIITMPFIFANEVCEKLAVVGFHANMISYLTTQLHMPLTK-AANTLTNFGGTGSLTPLIGAFVADTYAGRFWTITVASI   92 (577)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~lg~s~~~-~~~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~   92 (577)
                      ..|+...+++|...+.. -+=...++...|+.+++|+|.+| .+.+.+++..++.++.+++|+++||+ |.|+++.++++
T Consensus        23 ~~W~~~~~~lC~fGF~~-e~R~n~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrl-G~K~vL~l~~l  100 (511)
T TIGR00806        23 KSWRVLVLYLCFYGFMA-QFRPGESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYL-RYKPVLVLQAL  100 (511)
T ss_pred             cchhHHHHHHHHHHHHH-HhhchHHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHH
Confidence            46777777666543332 22345566778999999999999 99999999999999999999999998 99999999999


Q ss_pred             HHHHHHHHHHHhhhcCCCCCCCCCCCCcccccccchhHHHHHHHHHHHhccCCcccchhhhhhccCCCCCchhhhhhhhh
Q 008096           93 IYQIGMFSLTLSAILPQLRPPPCQGDQVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKY  172 (577)
Q Consensus        93 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~  172 (577)
                      .+.+..++++++.                      +...+.+.|++.|++.|... +...++..++|+++      |+++
T Consensus       101 ~Wsl~t~L~~fa~----------------------Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP~kE------R~ra  151 (511)
T TIGR00806       101 SFVCVWLLLLLGT----------------------SVWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPSR------YQRA  151 (511)
T ss_pred             HHHHHHHHHHHHH----------------------HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHH------HHHH
Confidence            9999999999987                      67889999999999999999 99999999999887      9999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHhhcccccchhhh---HHHHHHHHHHHHHHHHcc
Q 008096          173 FNWYYFVMGAAVLVAVTVLVYIQDNVGWNWGL---GIPTVAMFLSIIAFVFGY  222 (577)
Q Consensus       173 ~~~~~~~~~ig~~lg~~i~~~l~~~~gw~~~f---~~~~~~~~~~~~~~~~~~  222 (577)
                      .++...+..+|.++++++++++ ..+||++-+   ++......+++++.++..
T Consensus       152 tsi~~sg~~vG~~Ia~~L~qll-~s~gWr~y~~Ln~Isl~s~~~a~~~a~~LP  203 (511)
T TIGR00806       152 AAYSRAAVLLGVFLSSVLGQLL-VTLGWISYSTLNIISLVFMTFSVFLALFLK  203 (511)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-HhcCchhHHHHHHHHHHHHHHHHHHHHhCC
Confidence            9999999999999999999994 568988655   344445555555555543

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.78  E-value=2e-17  Score=165.31  Aligned_cols=118  Identities=14%  Similarity=0.100  Sum_probs=107.5

Q ss_pred             CCChHHHHHHHHHHhHhhhhchhhhhhhhhhccchhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCcccccccch
Q 008096           49 HMPLTKAANTLTNFGGTGSLTPLIGAFVADTYAGRFWTITVASIIYQIGMFSLTLSAILPQLRPPPCQGDQVCKEADTGQ  128 (577)
Q Consensus        49 g~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (577)
                      +.+..-+|.+-+.|++...+.++.+|.++||| |||+++..+.+..++...+.+.+.                      +
T Consensus        64 ~~~~~yaGflGSsF~ilQ~~sS~~~G~~SD~y-GRkpvll~c~~~va~s~ll~~~S~----------------------~  120 (451)
T KOG2615|consen   64 GASVFYAGFLGSSFSILQFISSPLWGCLSDRY-GRKPVLLACLIGVALSYLLWALSR----------------------N  120 (451)
T ss_pred             cccchhhhhHhhHHHHHHHHhhhhhhhhhhhh-CchHHHHHHHHHHHHHHHHHHHHH----------------------H
Confidence            34567789999999999999999999999999 999999999999999988888887                      6


Q ss_pred             hHHHHHHHHHHHhccCCcccchhhhhhccCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhcc
Q 008096          129 LAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAVLVAVTVLVYIQD  196 (577)
Q Consensus       129 ~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~lg~~i~~~l~~  196 (577)
                      ...+.++|++.|+..|- .....++++|.+++++      |+.+++....+..+|.++||.++|++.+
T Consensus       121 F~afv~aR~l~Gi~kgn-l~v~rAiisdV~sek~------r~l~ms~v~~a~~lGfilGPmIGgyla~  181 (451)
T KOG2615|consen  121 FAAFVLARFLGGIFKGN-LSVIRAIISDVVSEKY------RPLGMSLVGTAFGLGFILGPMIGGYLAQ  181 (451)
T ss_pred             HHHHHHHHHhhhhccCc-hHHHHHHHHhhcChhh------ccceeeeeehhhhcchhhcchhhhHHHh
Confidence            66677889999999886 4778899999999988      9999999999999999999999999987

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=99.77  E-value=1.9e-16  Score=167.17  Aligned_cols=384  Identities=12%  Similarity=0.113  Sum_probs=218.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhHhhhhchhhhhhhhhhccchhHHHHHHHHHHHHHHHHH
Q 008096           22 IFANEVCEKLAVVGFHANMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADTYAGRFWTITVASIIYQIGMFSL  101 (577)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~l~~~l~~~lg~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~i~~~~~  101 (577)
                      +-...++..+.+-...++++.|++ +.|+|..|+|.+.+...+...+.+++.|+++||+..+||.+.+..++.++.....
T Consensus         7 Ls~~~f~~f~~~G~~~p~~~~~L~-~~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~   85 (400)
T PF03825_consen    7 LSLMYFLYFFAYGAFLPYLPLYLE-SRGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLL   85 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHH
Confidence            344555555666667789999997 5689999999999999999999999999999998567888877777766655555


Q ss_pred             HHhhhcCCCCCCCCCCCCcccccccchhHHHHHHHHHHHhccCCcccchhhhhhccCCCCCchhhhhhhhhhhHHHHHHH
Q 008096          102 TLSAILPQLRPPPCQGDQVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMG  181 (577)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~  181 (577)
                      ....                      +.+.++...++..+......|...++..+...++  +++      ++-......
T Consensus        86 ~~~~----------------------~f~~~~~~~~l~~~~~~p~~pl~dsi~~~~~~~~--~~~------YG~iRlwGS  135 (400)
T PF03825_consen   86 AFSS----------------------SFWWLFVIMLLFSFFFSPTMPLSDSIALSYLGDR--GKD------YGRIRLWGS  135 (400)
T ss_pred             HHhc----------------------cHHHHHHHHHHHHHHHccHHHHHHHHHHHHcccc--cCC------CCcchhhhh
Confidence            5443                      4555666777778888888889999888877642  223      444444555


Q ss_pred             HHHHHHHHH-HHhhccccc---chhhhHHHHHHHHHHHHHHHHccccccccCCCCChhhHHHHHHHHHHhhccccCCCCC
Q 008096          182 AAVLVAVTV-LVYIQDNVG---WNWGLGIPTVAMFLSIIAFVFGYPLYRNLNPAGSPFVRLMQVCVAAFRKRNLDMVSDP  257 (577)
Q Consensus       182 ig~~lg~~i-~~~l~~~~g---w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (577)
                      +|.+++.+. ++++....+   ....+++.+...++.... .+..|+.+.++..+++.++                    
T Consensus       136 iGf~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ll~~~-~l~lp~~~~~~~~~~~~~~--------------------  194 (400)
T PF03825_consen  136 IGFIVAALAFGGLLGGYLGISGTSLIFYIAAILSLLLAGF-ALFLPKTPPKRSAKESVKK--------------------  194 (400)
T ss_pred             HHHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHHHHH-HHhCCCCccccccCCCccc--------------------
Confidence            666666443 222322222   223455554433222211 1222221110000000000                    


Q ss_pred             cccccccchhhhhhcCCcccccccchhhhhhhhccccccCCCCCcccccchhhhhhhhhhhhhhh-HHHHHHHHHHHhhc
Q 008096          258 NVLYQNEELDASICLDGKLLHTKHMKFLDKAAIVTEEDDIKSPNLWRLNTVHRVEELKSVIRMGP-IWASGILLITAYAQ  336 (577)
Q Consensus       258 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~-l~~~~~~~~~~~~~  336 (577)
                                                             ....+.+      +..+.++...++. .++........+..
T Consensus       195 ---------------------------------------~~~~~~~------~llk~~~~~~Fll~~~l~~~~~~~~~~f  229 (400)
T PF03825_consen  195 ---------------------------------------LLGLDAL------KLLKNPRFLVFLLAAFLIGISHAAYYTF  229 (400)
T ss_pred             ---------------------------------------ccchHHH------HHhcCccHHHHHHHHHHHHHHHHHHHHH
Confidence                                                   0000000      0111122211111 11112222221111


Q ss_pred             cceeEEeecccccccccccccc-ccchhhhhhHHHHHHHHHhhhhhhhhccccccCCCCCCCchhHHHHHHHHHHHHHHH
Q 008096          337 QGTFSLQQAKSMDRHLTKSFQI-PAGSMSVFTMVSMLSTIALYDRIIIPVARKFTGLDRGITFLHRMGIGFVISVLATLV  415 (577)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ig~~~~~l~~~~  415 (577)
                      ...+       .+...  ++.. ..+...++..+.-+.....    .+++.+|++       ..+.+.++.+..++-..+
T Consensus       230 ~~~y-------l~~~g--g~~~~~~g~~~~l~~~aEi~~f~~----~~~~~~r~g-------~~~ll~~a~~~~~vR~~l  289 (400)
T PF03825_consen  230 FSIY-------LQELG--GYSGSTIGILWALGVVAEIPFFFF----SGRFLKRFG-------IKWLLLLALVAYAVRWLL  289 (400)
T ss_pred             HHHH-------HHHcc--cchhhHHHHHHHHHHHHHHHHHHH----HHHHHHhcC-------HHHHHHHHHHHHHHHHHH
Confidence            1111       11100  1100 1112222222222222222    344555553       445588999999998888


Q ss_pred             HHHHHHHHHHHHHhcCCCCCCCccccchhhHHHHHHHHHHHHHHHHhhhhhhhhhcccCcccHHHHHHHHHH-HHhHHHH
Q 008096          416 AGFVEMKRKQAALAHGLVDKPHIIIPISVLWLVPQYSLHGIAEAFMSVGHLEFLYDQAPESMRSTATALFWT-ANSIGNY  494 (577)
Q Consensus       416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~gi~~~~~~~~~~~~v~~~~P~~~rg~~~gi~~~-~~~lg~~  494 (577)
                      ++....                 +.+..+.......+++|+..+........|+.+.+|++.|++++|+.+. ..++|..
T Consensus       290 ~a~~~~-----------------~~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~  352 (400)
T PF03825_consen  290 YAYFSD-----------------PWPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGA  352 (400)
T ss_pred             HHHhcC-----------------CcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHH
Confidence            776630                 0001111223345679999999999999999999999999999999884 5899999


Q ss_pred             HHHHHHHHHhhhcCCCCCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhhhhhc
Q 008096          495 VSTLLVTLVHKFSAGPNGSNWLPDNNLNKGKLEYFYWLITLLQVVNVIYYFFCAKI  550 (577)
Q Consensus       495 l~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  550 (577)
                      +|..+.|.+.|..+..+.           -.+..+|.+.+++.++..++++++.|+
T Consensus       353 iG~~igG~l~~~~g~~~~-----------~~~~~~~~v~a~~~~~~~~~f~~~fk~  397 (400)
T PF03825_consen  353 IGSLIGGWLYDAFGARGM-----------FDWSAVFLVFAVMALVILVLFVILFKP  397 (400)
T ss_pred             HHHHHHHHHHHHhcchhh-----------hhHHHHHHHHHHHHHHHHHHHHhhccC
Confidence            999999999887643221           123345666666666666666666553

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=99.76  E-value=3.7e-16  Score=155.15  Aligned_cols=425  Identities=12%  Similarity=0.071  Sum_probs=242.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhHhhhhchhhhhhhhhhccchhHHHHHHHHHHHHHHHHHHHh
Q 008096           25 NEVCEKLAVVGFHANMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADTYAGRFWTITVASIIYQIGMFSLTLS  104 (577)
Q Consensus        25 ~~~~~~~~~~~~~~~l~~~l~~~lg~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~i~~~~~~~~  104 (577)
                      ..++.....-.....+..-+.+..|++..|..++......+..+++-.+|.++|++ |||+...+......+..++-..+
T Consensus        85 ~gwmad~m~~m~~s~i~~~l~~~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~~-grr~~f~~T~l~t~v~~~is~~s  163 (528)
T KOG0253|consen   85 MGWMADAMEMMLLSLILPALDEVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADTI-GRRKGFNLTFLVTGVFGVISGAS  163 (528)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHhhhhhhhhhhheehhhh-hcchhhhhhHHHHHHHHHhhcCC
Confidence            44445555556666677777888899999999999999999999999999999998 99999988876665555554443


Q ss_pred             hhcCCCCCCCCCCCCcccccccchhHHHHHHHHHHHhccCCcccchhhhhhccCCCCCchhhhhhhhhhhHHHHHHHHHH
Q 008096          105 AILPQLRPPPCQGDQVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAV  184 (577)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~  184 (577)
                      .                      |+..+.+.|.+.|+|.|+ .|...++-.|..|...      |+.-.-.. ....+|.
T Consensus       164 p----------------------nf~~L~~f~~l~~~g~gg-~pv~~~~yle~lp~~~------r~~~~V~~-~~waig~  213 (528)
T KOG0253|consen  164 P----------------------NFASLCVFRALWGFGVGG-LPVDSAIYLEFLPSSH------RWLLTVMS-FFWAIGQ  213 (528)
T ss_pred             C----------------------CeehhhHHHHHHhccCCC-ccHhHHHHHHhccCcC------CCcchhHH-HHHHHHH
Confidence            3                      778899999999999999 8999999999999766      55544444 5678888


Q ss_pred             HHHHHHHHhhcccccchhhhHHHHHHHHHHHHHHHHc--cccccccCCCCChhhHHHHHHHHHHhhccccCCCCCccccc
Q 008096          185 LVAVTVLVYIQDNVGWNWGLGIPTVAMFLSIIAFVFG--YPLYRNLNPAGSPFVRLMQVCVAAFRKRNLDMVSDPNVLYQ  262 (577)
Q Consensus       185 ~lg~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  262 (577)
                      +++..+.=....++||||..........+.....+..  .+|+...+  +++.+. ...+....+.++..+|.-....+.
T Consensus       214 v~ea~law~vm~~~gwr~~l~~~~~pl~~~a~f~~w~~ESpRf~~~~--G~~~kA-letL~kiArmNg~qlplgvl~~s~  290 (528)
T KOG0253|consen  214 VFEALLAWGVMSNFGWRYLLFTSSTPLMFAARFLVWVYESPRFYLAK--GDDYKA-LETLHKIARMNGKQLPLGVLESSA  290 (528)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHhhcccCcchhhhc--CChHHH-HHHHHHHHHhcCCCCCcceeeeeh
Confidence            8888777666678899987766665433332322222  33333222  222222 223333444455555543333332


Q ss_pred             ccchhhhhhcCCcccccccchhhhhhhhccccccCCCCCcccccchhhhhhhhhhhhhhhHHHH-------HHHHHHHhh
Q 008096          263 NEELDASICLDGKLLHTKHMKFLDKAAIVTEEDDIKSPNLWRLNTVHRVEELKSVIRMGPIWAS-------GILLITAYA  335 (577)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~l~~~-------~~~~~~~~~  335 (577)
                      ..+..+++..+.......               +.++......  .-..+-||+.+..+.+++.       .++.-.-..
T Consensus       291 ~~~~e~e~~~~~~~~~~a---------------~ke~rg~~~n--Llsp~lrkttlllw~iwfgnafsyyg~VLlttelf  353 (528)
T KOG0253|consen  291 IDRQEQEESDLDDSKSSA---------------AKEVRGGTTN--LLSPKLRKTTLLLWRIWFGNAFSYYGSVLLTTELF  353 (528)
T ss_pred             hhhhhhhhhchhhhhhcc---------------ccccccchHh--hcChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            221111111111110000               0000000000  0011223333322222221       112212222


Q ss_pred             ccc----eeEEeeccccccccccccccc----cchhhhhhHH-HHHHHHHhhhhhhhhccccccCCCCCCCchhHHHHHH
Q 008096          336 QQG----TFSLQQAKSMDRHLTKSFQIP----AGSMSVFTMV-SMLSTIALYDRIIIPVARKFTGLDRGITFLHRMGIGF  406 (577)
Q Consensus       336 ~~~----~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ig~  406 (577)
                      |..    .+....+...+....-.....    ...+.+..-+ +.++...        +.+|+|||+.       |..++
T Consensus       354 qsgd~c~~~~r~~p~e~e~~~~c~~s~~~dYrdllitslaefPGlLIt~~--------iverlGRKkT-------Mal~l  418 (528)
T KOG0253|consen  354 QSGDACPLYNRFLPTELETRANCPLSVAKDYRDLLITSLAEFPGLLITGV--------IVERLGRKKT-------MALSL  418 (528)
T ss_pred             hccCccccchhcchhHHHhhhcCCccchhHHHHHHHHHHhhCCchhHHHH--------HHHHhcchhH-------HHHHH
Confidence            221    111122222222110000000    1111121111 1222323        4445555554       77777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccccchhhHHHHHHHHHHHHHHHHhhhhhhhhhcccCcccHHHHHHHHH
Q 008096          407 VISVLATLVAGFVEMKRKQAALAHGLVDKPHIIIPISVLWLVPQYSLHGIAEAFMSVGHLEFLYDQAPESMRSTATALFW  486 (577)
Q Consensus       407 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~gi~~~~~~~~~~~~v~~~~P~~~rg~~~gi~~  486 (577)
                      ++..+..++.....                      +........+..-++....+.+.|.|..|..|+..|+++.|...
T Consensus       419 ~~f~iflfll~~c~----------------------~rn~~tvllf~arafisg~fqvaYvYtPEVyPTavRatgvGtcS  476 (528)
T KOG0253|consen  419 ILFGIFLFLLTTCK----------------------TRNAYTVLLFTARAFISGAFQVAYVYTPEVYPTAVRATGVGTCS  476 (528)
T ss_pred             HHHHHHHHHHHHhc----------------------CcchhHHHHHHHHHHHhchheEEEEecCcccchhhhhcchhhhh
Confidence            77777766655443                      11122222334445566777889999999999999999999999


Q ss_pred             HHHhHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhhhhhccccccc
Q 008096          487 TANSIGNYVSTLLVTLVHKFSAGPNGSNWLPDNNLNKGKLEYFYWLITLLQVVNVIYYFFCAKIYTFKPI  556 (577)
Q Consensus       487 ~~~~lg~~l~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  556 (577)
                      .++.+|+.+.|++. ......      ...+            -.++..+.+++.+..+++..|+|+|..
T Consensus       477 smaRIggI~~p~iA-~~~e~s------~sl~------------i~vy~~~~ilagIavcffPiEtkGR~l  527 (528)
T KOG0253|consen  477 SMARIGGIFSPVIA-MRAELS------TSLP------------IFVYGALFILAGIAVCFFPIETKGRSL  527 (528)
T ss_pred             hHHhhhhhhhhHHH-HHhccc------eeeh------------HHHHHHHHHHHHHHheeeeeccCCCCC
Confidence            99999999999997 332211      1111            366777788888888888778777653

>TIGR00805 oat sodium-independent organic anion transporter

Probab=99.76  E-value=4e-17  Score=182.36  Aligned_cols=201  Identities=14%  Similarity=0.192  Sum_probs=153.8

Q ss_pred             CCcceehHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhHhhhhchhhhhhhhhhccchhHHHHHHHHH
Q 008096           14 GGIITMPFIFANEVCEKLAVVGFHANMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADTYAGRFWTITVASII   93 (577)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~lg~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~   93 (577)
                      ..++.+++.++...+....+.++.......++++++++.++.|++.+.+.+++.++.++.|+++||+ |||+.+.+++++
T Consensus        29 ~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~-~r~~~i~~g~ll  107 (633)
T TIGR00805        29 SKIKVFSLLLTCAQLQGLLYNGLVNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKL-HRPIVIGIGCAI  107 (633)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhccc-CcceEEEecHHH
Confidence            3444444545555566666677888888889999999999999999999999999999999999998 999999999999


Q ss_pred             HHHHHHHHHHhhhcCC-C---------------CCCCCCCC-----------Ccccccc--cchhHHHHHHHHHHHhccC
Q 008096           94 YQIGMFSLTLSAILPQ-L---------------RPPPCQGD-----------QVCKEAD--TGQLAILYASLLLAALGSG  144 (577)
Q Consensus        94 ~~i~~~~~~~~~~~~~-~---------------~~~~~~~~-----------~~~~~~~--~~~~~~~~~~~~l~g~g~g  144 (577)
                      ++++.+++++...+.. +               ....|..+           ..|....  ...+..++++|+++|+|.+
T Consensus       108 ~~lg~ll~alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~  187 (633)
T TIGR00805       108 MGLGSFLLSLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGAT  187 (633)
T ss_pred             HHHHHHHHhChHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCC
Confidence            9999999886531110 0               01122111           1222211  1246678899999999999


Q ss_pred             CcccchhhhhhccCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhcccc----------------------cchh
Q 008096          145 GIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAVLVAVTVLVYIQDNV----------------------GWNW  202 (577)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~lg~~i~~~l~~~~----------------------gw~~  202 (577)
                      ...+...+++.|.+|+++      |++++++++.+..+|..+|+++++++.+.+                      +|+.
T Consensus       188 ~~~~~~~~~i~d~~~~~~------~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl  261 (633)
T TIGR00805       188 PIFPLGISYIDDFAKSKN------SPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWI  261 (633)
T ss_pred             cchhcCchhhhccCCccc------cHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHH
Confidence            999999999999999988      999999999999999999999999876532                      2777


Q ss_pred             hhHHHHHHHHHHHHHHHHc
Q 008096          203 GLGIPTVAMFLSIIAFVFG  221 (577)
Q Consensus       203 ~f~~~~~~~~~~~~~~~~~  221 (577)
                      .|++.+++.++..+.++..
T Consensus       262 ~Fli~g~l~~l~~v~l~~~  280 (633)
T TIGR00805       262 GFLICGGVALLTSIPFFFF  280 (633)
T ss_pred             HHHHHHHHHHHHHHHHHhC
Confidence            7877776665554444443

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=99.75  E-value=4.5e-16  Score=169.05  Aligned_cols=150  Identities=11%  Similarity=0.150  Sum_probs=119.2

Q ss_pred             HHHHHHHHHhcCCChHHHHHHHHHHhHhhhhchhhhhhhhhhccchhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCC
Q 008096           38 ANMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADTYAGRFWTITVASIIYQIGMFSLTLSAILPQLRPPPCQG  117 (577)
Q Consensus        38 ~~l~~~l~~~lg~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  117 (577)
                      .....++..++|-+ ....|+.+...+...+..++.|+++|.| |||..++.+.++..+|.+.++-+.            
T Consensus        64 a~~l~~I~~diG~~-~~~~w~~~~~~l~~av~~~~~G~LSDlf-GRr~~~i~g~~l~vvG~Iv~atA~------------  129 (599)
T PF06609_consen   64 ASILPYINADIGGS-DNWSWFSTAWTLASAVSFPFVGRLSDLF-GRRYFFIIGSLLGVVGSIVCATAQ------------  129 (599)
T ss_pred             HHHHHHHHHhcCCC-ccchHHHHHHHHHHHHHHHhhHHHHHHh-cchHHHHHHHHHHHhHHHHhhcCC------------
Confidence            34456888899865 6788999999999999999999999998 999999999999999999999876            


Q ss_pred             CCcccccccchhHHHHHHHHHHHhccCCcccchhhhhhccCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhccc
Q 008096          118 DQVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAVLVAVTVLVYIQDN  197 (577)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~lg~~i~~~l~~~  197 (577)
                                +...++++-.+.|+|.|... .....++|..|.+.      |.....+.....-+....++.++..+..+
T Consensus       130 ----------~~~~~iag~~l~GvgaG~~~-~~~~~isEl~p~k~------R~~~~~~~~~~~i~~~~~~~~ia~~~~~~  192 (599)
T PF06609_consen  130 ----------NMNTFIAGMVLYGVGAGVQE-LAALAISELVPNKW------RGLGLAIASIPFIITTWISPLIAQLFAAH  192 (599)
T ss_pred             ----------cHHHHHHHHHHHHHhhHHHH-HHHHHHHHhcccch------hhhHhHHHHHHHHhhhcccHHHHHHhccC
Confidence                      67779999999999977665 45666899998655      66666655554444444566666566556


Q ss_pred             ccchhhhHHHHHHHHHHHHHH
Q 008096          198 VGWNWGLGIPTVAMFLSIIAF  218 (577)
Q Consensus       198 ~gw~~~f~~~~~~~~~~~~~~  218 (577)
                      .+|||.|++..+...++++..
T Consensus       193 ~~WRw~~~~~~i~~~i~~vl~  213 (599)
T PF06609_consen  193 SGWRWIFYIFIIWSGIALVLI  213 (599)
T ss_pred             CCcchHHHHHHHHHHHHHHHH
Confidence            789999999988766665443

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.74  E-value=2.4e-15  Score=159.16  Aligned_cols=178  Identities=12%  Similarity=-0.034  Sum_probs=121.4

Q ss_pred             ehHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHH--HHHhHhhhhchhhh-hhhhhhccchhHHHHHHHHHH-
Q 008096           19 MPFIFANEVCEKLAVVGFHANMISYLTTQLHMPLTKAANTL--TNFGGTGSLTPLIG-AFVADTYAGRFWTITVASIIY-   94 (577)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~lg~s~~~~~~i~--~~~~~~~~~~~~~~-G~laDr~~Grk~~~~~~~~~~-   94 (577)
                      ...+.+..+...+.+....+.+|.|++ +.|.|.++.|.+.  ....+...+.+++. ++.+||+ ||||..++.+.+. 
T Consensus         3 ~~~~~~ly~~~g~~~~~~~p~lp~~l~-~~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~-g~r~~~i~~~~~~~   80 (390)
T TIGR02718         3 VITLGLLYLSQGIPIGLAMDALPTLLR-EDGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRL-GRRRSWVLPMQCLV   80 (390)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccC-CcchhHHHHHHHHH
Confidence            345556788888888888899999996 5699999999973  45566666666666 6689998 9999876665332 


Q ss_pred             HHHHHHHHHhhhcCCCCCCCCCCCCcccccccchhHHHHHHHHHHHhccCCcccchhhhhhccCCCCCchhhhhhhhhhh
Q 008096           95 QIGMFSLTLSAILPQLRPPPCQGDQVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFN  174 (577)
Q Consensus        95 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  174 (577)
                      .+....+++..  +.                ......++...++.++..+...+...++..|..++++      ++.+.+
T Consensus        81 ~~~~~~~~~~~--~~----------------~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~------~~~~~~  136 (390)
T TIGR02718        81 SACLASLALVG--PD----------------VAGAGWAVGLLACASLASATQDIATDGMAAEHFNGRT------LAKGNA  136 (390)
T ss_pred             HHHHHHHHcCC--cc----------------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhh------hhHHHH
Confidence            22222222111  00                0112223344445556666666666777777666554      677778


Q ss_pred             HHHHHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHHHHHHHHHcc
Q 008096          175 WYYFVMGAAVLVAVTVLVYIQDNVGWNWGLGIPTVAMFLSIIAFVFGY  222 (577)
Q Consensus       175 ~~~~~~~ig~~lg~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~  222 (577)
                      ...++..+|..+|+...+++.+.+||+..|++.++..++..+......
T Consensus       137 ~~~~g~~lG~~~g~~~~~~l~~~~gw~~~f~~~a~l~~~~~~~~~~~~  184 (390)
T TIGR02718       137 VQIAGVMIGFFGGGAGTLVLFGKFGQRPAFLLVACVPLASLVCVLWLK  184 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcC
Confidence            888888999999998888999999999999998887766555544433

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>PF13347 MFS_2: MFS/sugar transport protein

Probab=99.73  E-value=6.8e-16  Score=165.53  Aligned_cols=396  Identities=14%  Similarity=0.111  Sum_probs=240.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhHhhhhchhhhhhhhh----hccchhHH-HHHHHHHHHHHHHH
Q 008096           26 EVCEKLAVVGFHANMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVAD----TYAGRFWT-ITVASIIYQIGMFS  100 (577)
Q Consensus        26 ~~~~~~~~~~~~~~l~~~l~~~lg~s~~~~~~i~~~~~~~~~~~~~~~G~laD----r~~Grk~~-~~~~~~~~~i~~~~  100 (577)
                      .+..++.......++..|+++.+|+++...+.+..+..+..++..|+.|+++|    |+ ||||. +.+|.++.+++..+
T Consensus        10 ~~~~~~~~~~~~~~~~~f~~~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~-Grrrp~~l~g~i~~~~~~~l   88 (428)
T PF13347_consen   10 DLGYNMIWSLLSSYLLYFYTDVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRW-GRRRPWILIGAILLALSFFL   88 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccc-cccceEeehhhHHHHHHHHH
Confidence            45566666667778999999999999999999999999999999999999999    77 76665 56777878887777


Q ss_pred             HHHhhhcCCCCCCCCCCCCcccccccchhHHHHHHHHHHHhccCCcccchhhhhhccCCCCCchhhhhhhhhhhHHHHHH
Q 008096          101 LTLSAILPQLRPPPCQGDQVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVM  180 (577)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~  180 (577)
                      +....  |.            ..........+.+..++..++.........++.+|+.++++     +|.+..++-....
T Consensus        89 lf~~~--p~------------~~~~~~~~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~-----~R~~l~~~~~~~~  149 (428)
T PF13347_consen   89 LFSPP--PA------------GLSFTAKLVWLFVFYILFDIAYTFVQIPYNALIPELTPDPD-----ERTRLSSWRMIFS  149 (428)
T ss_pred             hhccc--cc------------hhhhhhHHHHHHHHHHHHHHhhhhccCchhhcCccccccHh-----hhhhHHHHHHHHH
Confidence            76531  10            00011133445667777799999999999999999998643     1788888887888


Q ss_pred             HHHHHHHHHHHHhhcccc-------cchhhhHHHHHHHHHHHHHHHHccccccccCCCCChhhHHHHHHHHHHhhccccC
Q 008096          181 GAAVLVAVTVLVYIQDNV-------GWNWGLGIPTVAMFLSIIAFVFGYPLYRNLNPAGSPFVRLMQVCVAAFRKRNLDM  253 (577)
Q Consensus       181 ~ig~~lg~~i~~~l~~~~-------gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (577)
                      .+|.++...+.+.+.+..       +|++...+.+++.++..++..+..|+.+.+++..++..++               
T Consensus       150 ~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v~~iv~~v~~~i~~~~~ke~~~~~~~~~~~~~~---------------  214 (428)
T PF13347_consen  150 MIGSLLASFLAPILVSWFGGGDTSNGYRWMALVLAIVGLVFFLITFFFVKERSVEVTEQEKKISL---------------  214 (428)
T ss_pred             HHHHHHHHHHhhhhhhhhccCccchHHHHHHHHHHHHHHHHhhhhhheeeecccccccccccccc---------------
Confidence            888876666655444322       5777777777666655555555444310000000000000               


Q ss_pred             CCCCcccccccchhhhhhcCCcccccccchhhhhhhhccccccCCCCCcccccchhhhhhhhhhhhhhhHHHHHHHHHHH
Q 008096          254 VSDPNVLYQNEELDASICLDGKLLHTKHMKFLDKAAIVTEEDDIKSPNLWRLNTVHRVEELKSVIRMGPIWASGILLITA  333 (577)
Q Consensus       254 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~l~~~~~~~~~~  333 (577)
                                                                    +..++     ...+.|.....+.....   .+..
T Consensus       215 ----------------------------------------------~~~~~-----~~~~nr~~~~l~~~~~~---~~~~  240 (428)
T PF13347_consen  215 ----------------------------------------------RDSLR-----SLFRNRPFRILLLAFFL---QWLA  240 (428)
T ss_pred             ----------------------------------------------ccchh-----hhcccchHHHHHHHHHH---HHhh
Confidence                                                          00000     00111112111111111   1111


Q ss_pred             hhccceeEEeeccccccccccccccccchhhhhhHHHHHHHHHhhhhhhhhccccccCCCCCCCchhHHHHHHHHHHHHH
Q 008096          334 YAQQGTFSLQQAKSMDRHLTKSFQIPAGSMSVFTMVSMLSTIALYDRIIIPVARKFTGLDRGITFLHRMGIGFVISVLAT  413 (577)
Q Consensus       334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ig~~~~~l~~  413 (577)
                      .....+...+   +.+..++  .+...+.+.....+..++..++.    .++.+|+++|+.       +..+.++.+++.
T Consensus       241 ~~~~~~~~~y---~~~~vl~--~~~~~~~~~~~~~~~~~v~~~~~----~~l~~r~gk~~~-------~~~~~~~~~~~~  304 (428)
T PF13347_consen  241 FALMNTFLPY---YFTYVLG--NEGLISIFMLIFFVASIVGSPLW----GRLSKRFGKKKV-------YIIGLLLAALGF  304 (428)
T ss_pred             hhhhhhHHHH---HHHHHhc--CchhhHHHHHHHHHHHHHHHHHH----HHHHHHccceee-------hhhhHHHHHHHH
Confidence            1100111010   1111111  11112233334455556666664    447777777665       778888888877


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCCCCccccchhhHHHHHHHHHHHHHHHHhhhhhhhhhcccCc-------ccHHHHHHHHH
Q 008096          414 LVAGFVEMKRKQAALAHGLVDKPHIIIPISVLWLVPQYSLHGIAEAFMSVGHLEFLYDQAPE-------SMRSTATALFW  486 (577)
Q Consensus       414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~gi~~~~~~~~~~~~v~~~~P~-------~~rg~~~gi~~  486 (577)
                      ++..+..                    ..+.+++.+..++.+++.+......+++..|..+.       +..|...|+.+
T Consensus       305 ~~~~~~~--------------------~~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~  364 (428)
T PF13347_consen  305 LLLFFLG--------------------PGSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNS  364 (428)
T ss_pred             HHHHHHH--------------------hhhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhh
Confidence            7666554                    13667777888999999999999999999998873       55799999999


Q ss_pred             HHHhHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhhhhhcc
Q 008096          487 TANSIGNYVSTLLVTLVHKFSAGPNGSNWLPDNNLNKGKLEYFYWLITLLQVVNVIYYFFCAKIY  551 (577)
Q Consensus       487 ~~~~lg~~l~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  551 (577)
                      ....++..+++.+.+.+.+..+...+..     ..+..........++..-++..++..++..++
T Consensus       365 ~~~k~~~~la~~i~g~~l~~~Gy~~~~~-----~q~~~~~~~i~~~~~~~p~~~~~~~~i~~~~y  424 (428)
T PF13347_consen  365 FFIKIGQGLAGAIVGLLLALVGYDANAA-----VQSASALSGIRILFSIVPAIFLLLAIIFMRFY  424 (428)
T ss_pred             hhhHHHHHHHHHHHHHHHHHhCcCCCcC-----cCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            9999999999999998877664332110     12223333344444444444444444444444

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=99.72  E-value=1.7e-15  Score=164.08  Aligned_cols=419  Identities=15%  Similarity=0.091  Sum_probs=254.9

Q ss_pred             HHHHHHHHHHHHHHHH---HHHHHHHHhcCCChHHHHHHHHHHhHhhhhchhhhhhhhhhccchhHHHHHHHHHHHHHHH
Q 008096           23 FANEVCEKLAVVGFHA---NMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADTYAGRFWTITVASIIYQIGMF   99 (577)
Q Consensus        23 ~~~~~~~~~~~~~~~~---~l~~~l~~~lg~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~i~~~   99 (577)
                      ....|..++..+++..   .+-..++++++.+.++++|+.++......+..++.+.+.||| |.|++.++|.++..+|.+
T Consensus        48 ~~a~fl~~~~~~g~~~~~Gv~~~~~~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rf-g~R~v~i~G~~v~~~g~~  126 (509)
T KOG2504|consen   48 VFASFLVNLSTDGLINSFGLLFEELMDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRF-GCRTVMIAGGLVAALGLL  126 (509)
T ss_pred             eHhHHHHHHhhhcchheehhhHHHHHHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhhc-CchHHHHHHHHHHHHHHH
Confidence            3344444444444433   334566778999999999999999999999999999999999 999999999999999999


Q ss_pred             HHHHhhhcCCCCCCCCCCCCcccccccchhHHHHHH-HHHHHhccCCcccchhhhhhccCCCCCchhhhhhhhhhhHHHH
Q 008096          100 SLTLSAILPQLRPPPCQGDQVCKEADTGQLAILYAS-LLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYF  178 (577)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~  178 (577)
                      +.++++                      +++.+++. =++.|+|.|+....+...++.+|+. +      |+.+.|+-..
T Consensus       127 lssF~~----------------------~i~~l~lt~gvi~G~G~~~~~~paiviv~~YF~k-k------R~lA~Gia~~  177 (509)
T KOG2504|consen  127 LSSFAT----------------------SLWQLYLTFGVIGGLGLGLIYLPAVVILGTYFEK-K------RALATGIAVS  177 (509)
T ss_pred             HHHHHh----------------------hHHHHHHHHHHHhhccchhhhcchhhhhhhHhHH-H------HHHHHhhhhc
Confidence            999988                      56666655 4567999999999999999977763 2      8999999989


Q ss_pred             HHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHHHHHHHHHccccccccCCCCChhhHHHHHHHHHHhhccccCCCCCc
Q 008096          179 VMGAAVLVAVTVLVYIQDNVGWNWGLGIPTVAMFLSIIAFVFGYPLYRNLNPAGSPFVRLMQVCVAAFRKRNLDMVSDPN  258 (577)
Q Consensus       179 ~~~ig~~lg~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (577)
                      +..+|.++=|.+.-++.+.+|||+.+++...+.+-........+|.....++.  ..++...        .....+..+.
T Consensus       178 GsG~G~~~~~~l~~~l~~~~G~r~~~l~~~~~~l~~~~~~~~~rp~~~~~~~~--~~~~~~~--------~~~~~~~~~~  247 (509)
T KOG2504|consen  178 GTGVGTVVFPPLLKYLLSKYGWRGALLIFGGISLNVLVAGALLRPLSPPKKPN--EEKDLRN--------SAASVESTPK  247 (509)
T ss_pred             cCCcceeeHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCCCCcCCCch--hhhhhcc--------cccccccccc
Confidence            99999999888999999999999999888877766556656655533322222  0011000        0000000000


Q ss_pred             ccccccchhhhhhcCCcccccccchhhhhhhhccccccCCCCC--cccccc----hhhhhhhhhhhhhhhHHHHHHHHHH
Q 008096          259 VLYQNEELDASICLDGKLLHTKHMKFLDKAAIVTEEDDIKSPN--LWRLNT----VHRVEELKSVIRMGPIWASGILLIT  332 (577)
Q Consensus       259 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~~~~~~----~~~~~~~k~~~~~~~l~~~~~~~~~  332 (577)
                       ..+. +  .   ..+...+.+ ...........   ......  +-+...    .+..++++.+...+...+..+.+..
T Consensus       248 -~~~~-~--~---~~~~~~~~~-~~~~~~~~~~~---~~~~~~~~~~~~~~~~~d~~ll~~~~fl~~~~~~~~~~~g~~~  316 (509)
T KOG2504|consen  248 -PVEL-R--I---SERDSGLKK-LSLSNLATLKR---GPDKWRNSPLQAFLSMLDLSLLKDPKFLLLALSNLFAYLGFNV  316 (509)
T ss_pred             -cccc-c--c---ccCCCCCCc-ccccchhhhhh---CCccccccchhhhhhhhhHHHHcCchHHHHHHHHHHHHHHHHH
Confidence             0000 0  0   000000000 00000000000   000000  000000    0111111111111111111222222


Q ss_pred             HhhccceeEEeeccccccccccccccccchhhhhhHHHHHHHHHhhhhhhhhccccccCCCCCCCchhHHHHHHHHHHHH
Q 008096          333 AYAQQGTFSLQQAKSMDRHLTKSFQIPAGSMSVFTMVSMLSTIALYDRIIIPVARKFTGLDRGITFLHRMGIGFVISVLA  412 (577)
Q Consensus       333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ig~~~~~l~  412 (577)
                      .....+.+       .. +.+ ..+...+.+.++..+..+++-++.++    +.|+...     +......++++..+++
T Consensus       317 p~~~l~~~-------~~-~~g-~~~~~aa~l~Siigi~~i~gRi~~G~----laD~~~~-----~~~~~~~~~ll~~gl~  378 (509)
T KOG2504|consen  317 PFVYLPSY-------AK-SLG-LSSNDAAFLLSIIGVSDIIGRIILGL----LADKPGI-----RALVLFLLTLLIAGLA  378 (509)
T ss_pred             HHHHHHHH-------Hh-hcC-CChhhhHHHHHHHHHhhhhhhhhhhh----hcCcccc-----chHHHHHHHHHHHHHH
Confidence            21111111       11 110 11122445555566666666666555    4554321     2334456777777777


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCCCCccccchhhHHHHHHHHHHHHHHHHhhhhhhhhhcccCcccHHHHHHHHHHHHhHH
Q 008096          413 TLVAGFVEMKRKQAALAHGLVDKPHIIIPISVLWLVPQYSLHGIAEAFMSVGHLEFLYDQAPESMRSTATALFWTANSIG  492 (577)
Q Consensus       413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~gi~~~~~~~~~~~~v~~~~P~~~rg~~~gi~~~~~~lg  492 (577)
                      .+......                      +++.++...++.|+..+.........+.+..+.+.-+.+.|+...+.+++
T Consensus       379 ~~~~p~~~----------------------~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~  436 (509)
T KOG2504|consen  379 RLFLPFAT----------------------TYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIG  436 (509)
T ss_pred             HHHHHHhc----------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHH
Confidence            65555444                      56667777788889888888888889999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhcCCCCCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhhhh
Q 008096          493 NYVSTLLVTLVHKFSAGPNGSNWLPDNNLNKGKLEYFYWLITLLQVVNVIYYFFCA  548 (577)
Q Consensus       493 ~~l~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  548 (577)
                      ..++|.+.+.+.|..                ++|...|+..+...+++..++++..
T Consensus       437 ~l~gpPiag~~~d~t----------------g~Y~~~f~~~g~~~~~s~~~~~~~~  476 (509)
T KOG2504|consen  437 ALVGPPIAGLLYDIT----------------GNYDHAFYFCGLCFLLSAVLLLILR  476 (509)
T ss_pred             HHcCcccceeeeecc----------------CCeeeehhhcChHHHHHHHHHHHhH
Confidence            999999988776654                2234447777777777776666554

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=99.72  E-value=4.4e-15  Score=150.61  Aligned_cols=138  Identities=12%  Similarity=0.097  Sum_probs=119.7

Q ss_pred             HHHHHHHHHHHHHHhcCCChHHHHHHHHHHhHhhhhchhhhhhhhhhccchhHHHHHHHHHHHHHHHHHHHhhhcCCCCC
Q 008096           33 VVGFHANMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADTYAGRFWTITVASIIYQIGMFSLTLSAILPQLRP  112 (577)
Q Consensus        33 ~~~~~~~l~~~l~~~lg~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~~~~  112 (577)
                      .....-.+.+++++.+++|..|++++...+..++.+++++.|++.+|+ |+|+.+++|+.+++++..+..=+.       
T Consensus        28 ~~~l~diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~-gyk~gi~lgL~l~avg~~lF~pAa-------   99 (422)
T COG0738          28 ITCLNDILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKL-GYKAGIVLGLLLYAVGAALFWPAA-------   99 (422)
T ss_pred             HhhcchhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHh-hhHHHHHHHHHHHHHHHHHHhhhh-------
Confidence            356677788999999999999999999999999999999999999998 999999999999999988875333       


Q ss_pred             CCCCCCCcccccccchhHHHHHHHHHHHhccCCcccchhhhhhccCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 008096          113 PPCQGDQVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAVLVAVTVLV  192 (577)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~lg~~i~~  192 (577)
                                  ...++..++.+.++.+.|.+....++.++++.+.|+++      -..=+++.+....+|+++||++++
T Consensus       100 ------------~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~------a~~rlnl~q~fn~lGa~~gp~~g~  161 (422)
T COG0738         100 ------------SSKSYGFFLVALFILASGIGLLETAANPYVTLLGKPES------AAFRLNLAQAFNGLGAILGPLLGS  161 (422)
T ss_pred             ------------hhhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchh------HHHHHHHHHHhhhhHHHHHHHHHH
Confidence                        12367888899999999999999999999999999865      233367777788999999999998


Q ss_pred             hhcc
Q 008096          193 YIQD  196 (577)
Q Consensus       193 ~l~~  196 (577)
                      ++..
T Consensus       162 ~lil  165 (422)
T COG0738         162 SLIL  165 (422)
T ss_pred             HHHH
Confidence            8765

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.71  E-value=2.5e-15  Score=161.26  Aligned_cols=152  Identities=17%  Similarity=0.157  Sum_probs=126.5

Q ss_pred             HHHhcCCChHHHHHHHHHHhHhhhhchhhhhhhhhhccchhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCcccc
Q 008096           44 LTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADTYAGRFWTITVASIIYQIGMFSLTLSAILPQLRPPPCQGDQVCKE  123 (577)
Q Consensus        44 l~~~lg~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  123 (577)
                      +.+++++...+.+.+.++|.++++++.+++|++.||+ .-.+.+....+.+.+-.++.....                  
T Consensus        72 ~~edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~-~ls~~l~~~~~~w~~~~~~~~~~~------------------  132 (495)
T KOG2533|consen   72 LKEDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRF-PLSKGLSVSGILWGLFGFLTAAVH------------------  132 (495)
T ss_pred             CccccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhC-ChHHHHHHHHHHHHHHHHHHHHHh------------------
Confidence            3467889999999999999999999999999999998 866666666665555444444443                  


Q ss_pred             cccchhHHHHHHHHHHHhccCCcccchhhhhhccCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHHHHHhh------ccc
Q 008096          124 ADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAVLVAVTVLVYI------QDN  197 (577)
Q Consensus       124 ~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~lg~~i~~~l------~~~  197 (577)
                          +.+.+++.|++.|+.++..+|+...+++.+|.+++      |+.-+++++....+|+++|.++...+      ...
T Consensus       133 ----s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e------~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~  202 (495)
T KOG2533|consen  133 ----SFPGLIALRFLLGLFESGGWPGVVAILGNWYGKSE------RGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGL  202 (495)
T ss_pred             ----hhHHHHHHHHHHHHHhcccchHHHHHHHhhcChhh------hhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCc
Confidence                67789999999999999999999999999999988      99999999999999999999998765      335


Q ss_pred             ccchhhhHHHHHHHHHHHHHHHHcccc
Q 008096          198 VGWNWGLGIPTVAMFLSIIAFVFGYPL  224 (577)
Q Consensus       198 ~gw~~~f~~~~~~~~~~~~~~~~~~~~  224 (577)
                      .||||.|++.+++.++..++.++..|.
T Consensus       203 ~gW~~~FiI~G~i~~~~gi~~f~~lp~  229 (495)
T KOG2533|consen  203 AGWRWLFIIEGVITLVLGIVVFFFLPD  229 (495)
T ss_pred             CCceeehhHHHHHHHHHHheEEEEecC
Confidence            699999999998876666555555443

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=99.71  E-value=6.8e-16  Score=160.66  Aligned_cols=390  Identities=11%  Similarity=0.037  Sum_probs=218.7

Q ss_pred             ehHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhHhhhhchhhhhhhhhhccchhHHHHHHHHHHHH--
Q 008096           19 MPFIFANEVCEKLAVVGFHANMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADTYAGRFWTITVASIIYQI--   96 (577)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~lg~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~i--   96 (577)
                      .+..-...++..+.+-...++++.++++..|+|.+++|.+.++..+...+.+++.|.++||. |.||-++....+..+  
T Consensus         9 ~~~~s~~~f~~Ff~~gi~~pF~~iWL~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dkl-g~kK~Ll~~i~~l~~l~   87 (412)
T PF01306_consen    9 YWWLSLFYFFYFFIWGIFLPFFPIWLTQVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDKL-GLKKHLLWFIAILLLLF   87 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHHC-TTCSHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchh-hhhHHHHHHHHHHHHHH
Confidence            34444455555566667789999999988999999999999999999999999999999998 866654433322222  


Q ss_pred             HHHHH-HHhhhcCCCCCCCCCCCCcccccccchhHHHHHHHHHHHhccCCcccchhhhhhccCCCCCchhhhhhhhhhhH
Q 008096           97 GMFSL-TLSAILPQLRPPPCQGDQVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNW  175 (577)
Q Consensus        97 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  175 (577)
                      +-+.. .+.+.+..                  |   +.++.++.++..+......... .|.+-++.+|+   .+.=+|-
T Consensus        88 ~pff~~v~~pll~~------------------n---~~lg~iig~i~l~~~f~~~~~~-~Ea~~er~sr~---~~feYG~  142 (412)
T PF01306_consen   88 GPFFIYVFGPLLQS------------------N---FWLGAIIGGIYLGLVFNAGVPL-SEAYAERVSRR---NGFEYGR  142 (412)
T ss_dssp             HHHHHHTHHHHHHT------------------T----HHHHHHTTTTTTTTTTTHHHH-HHHHHHHHHHH---HSS-HHH
T ss_pred             HHHHHHHHHHHHHH------------------H---HHHHHHHHHHHHHHHHcccchH-HHHHHHHHHHH---hcCCcch
Confidence            21111 11110000                  1   2233333333333333222221 13333222222   3344666


Q ss_pred             HHHHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHHHHHHHHHccccccccCCCCChhhHHHHHHHHHHhhccccCCC
Q 008096          176 YYFVMGAAVLVAVTVLVYIQDNVGWNWGLGIPTVAMFLSIIAFVFGYPLYRNLNPAGSPFVRLMQVCVAAFRKRNLDMVS  255 (577)
Q Consensus       176 ~~~~~~ig~~lg~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (577)
                      ..+...+|.+++..++|.+.+ .+-+..||+.....++..++....++..+++.+..+.                     
T Consensus       143 ~R~wGSig~ai~s~~~G~L~~-i~p~~~fwi~s~~~~il~lll~~~~~~~~~~~~~~~~---------------------  200 (412)
T PF01306_consen  143 ARMWGSIGFAIASLLAGILFN-INPNIIFWIASAAAIILLLLLLLLKPDVPPQAEVADA---------------------  200 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHSS---SSSSS-SSTT---------------------
T ss_pred             HHHHhhHHHHHHHHHhheeee-eCccHHHHHHHHHHHHHHHHHHHcCCcCchhhhhhcc---------------------
Confidence            667788999999999999875 4556778877665554444444433321111100000                     


Q ss_pred             CCcccccccchhhhhhcCCcccccccchhhhhhhhccccccCCCCCcccccchhhhhhhhhhhhhhhHHHHHHHHHHHhh
Q 008096          256 DPNVLYQNEELDASICLDGKLLHTKHMKFLDKAAIVTEEDDIKSPNLWRLNTVHRVEELKSVIRMGPIWASGILLITAYA  335 (577)
Q Consensus       256 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~l~~~~~~~~~~~~  335 (577)
                       +                                       +.+.++.......+....|+......+.......|..+.
T Consensus       201 -~---------------------------------------~~~~~~~~~~~~~~l~k~~~fw~~~l~v~g~~~~Y~vfd  240 (412)
T PF01306_consen  201 -L---------------------------------------GAKKDKVSLKDVLSLFKMRNFWFFVLFVIGVAAIYDVFD  240 (412)
T ss_dssp             -S---------------------------------------SS------HHHHHHHTTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -c---------------------------------------ccCCCCCcHHHHHHHhcchhHHHHHHHHHHHHHHHHHHH
Confidence             0                                       000000000000011112222222222233333344433


Q ss_pred             -ccceeEEeeccccccccccccccccchhhhhhHHHHHHHHHhhhhhhhhccccccCCCCCCCchhHHHHHHHHHHHHHH
Q 008096          336 -QQGTFSLQQAKSMDRHLTKSFQIPAGSMSVFTMVSMLSTIALYDRIIIPVARKFTGLDRGITFLHRMGIGFVISVLATL  414 (577)
Q Consensus       336 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ig~~~~~l~~~  414 (577)
                       |.+.++...   .+     .-+..+..++..+.+.+++-.+.+-. ..++.+|++       +.+.++++..++++-..
T Consensus       241 qqf~~y~~~~---f~-----~~~~g~~~~G~l~s~~v~~E~~~m~~-~p~li~rig-------~k~~Lllag~i~~iRi~  304 (412)
T PF01306_consen  241 QQFPIYFASF---FQ-----SAGQGNQMYGYLWSVQVFLEALMMFF-SPWLINRIG-------AKNLLLLAGVIMAIRII  304 (412)
T ss_dssp             HHHHHHHHHT---SS-----SHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH--------HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHH---hc-----ccccChhHHhHHHHHHHHHHHHHHHH-HHHHHHhcC-------hHhHHHHHHHHHHHHHH
Confidence             333332111   01     11122344444444444333332221 344666664       33337777777777776


Q ss_pred             HHHHHHHHHHHHHHhcCCCCCCCccccchhhHHHHHHHHHHHHHHHHhhhhhhhhhcccCcccHHHHHHHH-HHHHhHHH
Q 008096          415 VAGFVEMKRKQAALAHGLVDKPHIIIPISVLWLVPQYSLHGIAEAFMSVGHLEFLYDQAPESMRSTATALF-WTANSIGN  493 (577)
Q Consensus       415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~gi~~~~~~~~~~~~v~~~~P~~~rg~~~gi~-~~~~~lg~  493 (577)
                      ..++.+                      +++++.+.-+++++-..+......-|+.+.+|++..++...+. +...++|.
T Consensus       305 ~~~~~~----------------------~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~  362 (412)
T PF01306_consen  305 GSGFAT----------------------NPWVISLIKLLHALEFPLLLVAAFKYITAHFDKRLSATLYLVGFQFAKQIGI  362 (412)
T ss_dssp             HHHT------------------------SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGGHHHHHHHHHTTTHHHHH
T ss_pred             HHhhhc----------------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHH
Confidence            666655                      7788888999999999999999999999999999999999996 68899999


Q ss_pred             HHHHHHHHHHhhhcCCCCCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhhhhhcc
Q 008096          494 YVSTLLVTLVHKFSAGPNGSNWLPDNNLNKGKLEYFYWLITLLQVVNVIYYFFCAKIY  551 (577)
Q Consensus       494 ~l~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  551 (577)
                      .+.+.+.|.++|..+                 .+..|++++++.++..++..+..++.
T Consensus       363 ~i~s~~~G~lyd~~G-----------------~~~tylimg~iv~~~~li~~f~l~~~  403 (412)
T PF01306_consen  363 IILSPLAGYLYDRIG-----------------FQHTYLIMGLIVLPFTLISAFTLKKD  403 (412)
T ss_dssp             HHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHS--S
T ss_pred             HHHhhhHHhhHhhcC-----------------cHHHHHHHHHHHHHHHHHheeeecCC
Confidence            999999999988652                 24568888888888888877776643

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>PTZ00207 hypothetical protein; Provisional

Probab=99.70  E-value=5.4e-14  Score=153.82  Aligned_cols=175  Identities=11%  Similarity=0.023  Sum_probs=128.8

Q ss_pred             CCCcceehHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhHhhhhchhhhhhhhhhccchhHHHHHHHH
Q 008096           13 KGGIITMPFIFANEVCEKLAVVGFHANMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADTYAGRFWTITVASI   92 (577)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~lg~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~   92 (577)
                      .++|..+...+.+..+.. ..|++. .....+++++|+|..|.+++.+... ...+++++.|+++||+ |+|+++.++.+
T Consensus        24 ~~Rw~~lva~~~~~~~~g-~~y~fs-v~s~~L~~~lgls~~~l~~i~svg~-~~g~~~lp~G~L~Dr~-G~R~vllig~l   99 (591)
T PTZ00207         24 PRRFALLVLGAFCSICTS-FMYAFN-LISGAMQARYNLTQRDLSTITTVGI-AVGYFLLPYSFIYDYL-GPRPIFVLSMT   99 (591)
T ss_pred             cchHHHHHHHHHHHHHHH-HHHHHH-HHHHHHHHHhCcCHHHHHHHHHHHH-HHHHHHHHHHHHHHHh-CcHHHHHHHHH
Confidence            344443333333333332 234444 4455788999999999999988744 4456777899999998 99999999999


Q ss_pred             HHHHHHHHHHHhhhcCCCCCCCCCCCCcccccccchhHHHHHHHHHHHhccCCcccchhhhhhccCCCCCchhhhhhhhh
Q 008096           93 IYQIGMFSLTLSAILPQLRPPPCQGDQVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKY  172 (577)
Q Consensus        93 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~  172 (577)
                      ++.++.++++++.+  .              ....+.+.+++.|++.|+|.+...+.....+.++|| ++      |+++
T Consensus       100 l~~iG~ll~ala~~--~--------------~i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~------RG~a  156 (591)
T PTZ00207        100 VFCLGTLLFALTFQ--E--------------VIEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SN------RGAV  156 (591)
T ss_pred             HHHHHHHHHHHHhc--c--------------cccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hh------hHHH
Confidence            99999999998630  0              001378889999999999999999999999999997 45      8999


Q ss_pred             hhHHHHHHHHHHHH-HHHHHHhhcccccchhhhHHHHHHHHHHHH
Q 008096          173 FNWYYFVMGAAVLV-AVTVLVYIQDNVGWNWGLGIPTVAMFLSII  216 (577)
Q Consensus       173 ~~~~~~~~~ig~~l-g~~i~~~l~~~~gw~~~f~~~~~~~~~~~~  216 (577)
                      .++...+.++|+.+ +++..+++.  .+|+..|++.++..++..+
T Consensus       157 ~Gi~~~~~gLGsaI~~~l~~~l~~--~~~~~~fl~l~vl~~vv~l  199 (591)
T PTZ00207        157 VAIMKTFTGLGSAILGSIQLAFFS--DNTSAYFFFLMSFALVVGI  199 (591)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH--HhHHHHHHHHHHHHHHHHH
Confidence            99999999999975 555555654  3577777666665444333

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=99.70  E-value=1.2e-14  Score=145.34  Aligned_cols=367  Identities=13%  Similarity=0.145  Sum_probs=240.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhHhhhhchhhhhhhhhhccchhHHHHHHHHHHHHHHHHHH
Q 008096           23 FANEVCEKLAVVGFHANMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADTYAGRFWTITVASIIYQIGMFSLT  102 (577)
Q Consensus        23 ~~~~~~~~~~~~~~~~~l~~~l~~~lg~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~i~~~~~~  102 (577)
                      +++.+=.+..+-+ ...+...+++++|+|.+++|.+.+.-.++..+.+++..+++.|+ |.++.+..++++.++|..+=.
T Consensus        18 vlia~NLR~~its-vgPLL~~Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~-g~er~l~~~Llli~~G~~iR~   95 (395)
T COG2807          18 VLIAFNLRPAITS-VGPLLDEIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRF-GEERSLFLALLLIAAGILIRS   95 (395)
T ss_pred             HHHHhccchhhhh-hhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHH-hhHHHHHHHHHHHHHHHHHHh
Confidence            3333334444433 34445677889999999999999999999999999999999998 999999999999988877665


Q ss_pred             HhhhcCCCCCCCCCCCCcccccccchhHHHHHHHHHHHhccCCcccchhhhhhccCCCCCchhhhhhhhhhhHHHHHHHH
Q 008096          103 LSAILPQLRPPPCQGDQVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGA  182 (577)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~i  182 (577)
                      ..                       +...++.+-.+.|.|.+..+...++.+-+.||.+       .+..+++|.+..++
T Consensus        96 ~~-----------------------~~~~L~~gt~l~G~gIav~nVLLPslIK~~Fpk~-------~~~mtglYs~sl~~  145 (395)
T COG2807          96 LG-----------------------GLPLLFLGTLLAGAGIAVINVLLPSLIKRDFPKR-------VGLMTGLYSTSLGA  145 (395)
T ss_pred             cc-----------------------cHHHHHHHHHHHHhhHHHHHHhhhHHHHhhcccc-------hhhHHhHHHHHHHH
Confidence            42                       4667899999999999999999999999999965       47889999999999


Q ss_pred             HHHHHHHHHHhhcccc-cchhhhHHHHHHHHHHHHHHHHccccccccCCCCChhhHHHHHHHHHHhhccccCCCCCcccc
Q 008096          183 AVLVAVTVLVYIQDNV-GWNWGLGIPTVAMFLSIIAFVFGYPLYRNLNPAGSPFVRLMQVCVAAFRKRNLDMVSDPNVLY  261 (577)
Q Consensus       183 g~~lg~~i~~~l~~~~-gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  261 (577)
                      |+.+|+.+...+.++. |||..+.+=+...+++++.++.-..+.+  .++.+..                          
T Consensus       146 ~aaLaa~lavpla~~~~gW~~aL~~WAl~allAl~~WlPq~~r~~--~~~~~~~--------------------------  197 (395)
T COG2807         146 GAALAAALAVPLAQHSGGWRGALGFWALLALLALLIWLPQALREQ--AASIATK--------------------------  197 (395)
T ss_pred             HHHHHhhhhhHHHHhhccHHHHHHHHHHHHHHHHHHHhhhccccc--ccccccc--------------------------
Confidence            9999999988888776 7999998888877777777765422111  1110000                          


Q ss_pred             cccchhhhhhcCCcccccccchhhhhhhhccccccCCCCCcccccchhhhhhhhhhhhhhhHHHHHHHHHHHhhccceeE
Q 008096          262 QNEELDASICLDGKLLHTKHMKFLDKAAIVTEEDDIKSPNLWRLNTVHRVEELKSVIRMGPIWASGILLITAYAQQGTFS  341 (577)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~l~~~~~~~~~~~~~~~~~~  341 (577)
                                                        ...+..-|+        +.......+.+=+....+|+...+.+.++
T Consensus       198 ----------------------------------~~~~~~vw~--------~~~aW~vtLfmGlqS~~~Y~~~~WLP~il  235 (395)
T COG2807         198 ----------------------------------LVSVRKVWR--------SPLAWQVTLFMGLQSLLYYIVIGWLPAIL  235 (395)
T ss_pred             ----------------------------------ccccccccc--------CchhHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence                                              000011221        11111111122233455666666665543


Q ss_pred             EeeccccccccccccccccchhhhhhHHHHHHHHHhhhhhhhhccccccCCCCCCCchhHHHHHHHHHHHHHHHHHHHHH
Q 008096          342 LQQAKSMDRHLTKSFQIPAGSMSVFTMVSMLSTIALYDRIIIPVARKFTGLDRGITFLHRMGIGFVISVLATLVAGFVEM  421 (577)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ig~~~~~l~~~~~~~~~~  421 (577)
                      ..+.  ++.       ...+.+.++..+..+........    +.+|..+++    +.  ......++.+++.-..+.+ 
T Consensus       236 i~~G--~sa-------~~aG~llsl~~l~~~~~~ll~P~----la~R~~n~r----~~--~~~~~~~~l~G~~G~~~~P-  295 (395)
T COG2807         236 IDRG--LSA-------AEAGSLLSLMQLAQLPTALLIPL----LARRSKNQR----PL--VVLALLLMLVGLVGLLLAP-  295 (395)
T ss_pred             HHcC--CCH-------HHhhhHHHHHHHHHHHHHHHHHH----HHHHhcccc----hH--HHHHHHHHHHHHHHHHHhh-
Confidence            3221  111       12333333333333333332222    444432222    22  3444445555554444443 


Q ss_pred             HHHHHHHhcCCCCCCCccccchhhHHHHHHHHHHHHHHHHhhhhhhhhhcccC-cccHHHHHHHHHHHHhHHHHHHHHHH
Q 008096          422 KRKQAALAHGLVDKPHIIIPISVLWLVPQYSLHGIAEAFMSVGHLEFLYDQAP-ESMRSTATALFWTANSIGNYVSTLLV  500 (577)
Q Consensus       422 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~gi~~~~~~~~~~~~v~~~~P-~~~rg~~~gi~~~~~~lg~~l~~~i~  500 (577)
                                         ..++++ .  .+++|+|.+..+|....++.+..+ ++..+...|+.+..+.+=..+||.++
T Consensus       296 -------------------~~~~~l-w--~~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~  353 (395)
T COG2807         296 -------------------GQLPIL-W--ALLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLF  353 (395)
T ss_pred             -------------------hhHHHH-H--HHHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhH
Confidence                               112221 2  478999999999999988777765 57778888999999999999999999


Q ss_pred             HHHhhhcCCCCCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhhhhh
Q 008096          501 TLVHKFSAGPNGSNWLPDNNLNKGKLEYFYWLITLLQVVNVIYYFFCAK  549 (577)
Q Consensus       501 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  549 (577)
                      |.++|.+     +.|...           +..++...++..++-+...|
T Consensus       354 G~lhDa~-----gsw~~~-----------~~~l~~~~i~m~i~Gl~a~r  386 (395)
T COG2807         354 GFLHDAT-----GSWSAP-----------LVLLALATLLMLIFGLRAGR  386 (395)
T ss_pred             hHHHHhc-----CChHHH-----------HHHHHHHHHHHHHHHhhcch
Confidence            9999987     455444           56666666666555555433

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.68  E-value=7.8e-16  Score=154.92  Aligned_cols=149  Identities=13%  Similarity=0.062  Sum_probs=136.1

Q ss_pred             HhcCCChHHHHHHHHHHhHhhhhchhhhhhhhhhccchhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCcccccc
Q 008096           46 TQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADTYAGRFWTITVASIIYQIGMFSLTLSAILPQLRPPPCQGDQVCKEAD  125 (577)
Q Consensus        46 ~~lg~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  125 (577)
                      +.++-++++.|++.+.+.+...+..++.|.+.||+ |+|-.+++|..++..+++++++..                    
T Consensus        99 ~~~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~i-Gy~ipm~~Gl~vmf~sTilFafg~--------------------  157 (464)
T KOG3764|consen   99 ISLDRENTQIGLLFASKALVQLLVNPFFGNLIDRI-GYKIPMVAGLFVMFLSTILFAFGN--------------------  157 (464)
T ss_pred             cCccccccchhHHHHHHHHHHHHhcccchhhHHHh-ccccHHHHHHHHHHHHHHHHHHcc--------------------
Confidence            35677899999999999999999999999999998 999999999999999999999987                    


Q ss_pred             cchhHHHHHHHHHHHhccCCcccchhhhhhccCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhcccccchhhhH
Q 008096          126 TGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAVLVAVTVLVYIQDNVGWNWGLG  205 (577)
Q Consensus       126 ~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~lg~~i~~~l~~~~gw~~~f~  205 (577)
                        +++.++++|.++|+|.++...+..++++|.||++.     .|++++|+.-.+..+|-++||..+|.+.+..|.+.+|.
T Consensus       158 --sy~~l~vAR~LQgvgsA~~~tsglamlAd~f~~d~-----er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFl  230 (464)
T KOG3764|consen  158 --SYPMLFVARSLQGVGSAFADTSGLAMLADVFPEDN-----ERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFL  230 (464)
T ss_pred             --hhHHHHHHHHHhhhhHHHHHhhhHHHHHHHcccch-----hhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHH
Confidence              67779999999999999999999999999999865     18999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHcc
Q 008096          206 IPTVAMFLSIIAFVFGY  222 (577)
Q Consensus       206 ~~~~~~~~~~~~~~~~~  222 (577)
                      +.+..+++...+-++..
T Consensus       231 VL~~v~Lld~~L~l~vi  247 (464)
T KOG3764|consen  231 VLAIVLLLDGALQLLVI  247 (464)
T ss_pred             HHHHHHHHHHHHHHhee
Confidence            99988877766655443

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=99.67  E-value=7.5e-14  Score=146.84  Aligned_cols=368  Identities=12%  Similarity=0.079  Sum_probs=232.9

Q ss_pred             CcceehHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhHhhhhchhhhhhhhhhc---cchhH-HHHHH
Q 008096           15 GIITMPFIFANEVCEKLAVVGFHANMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADTY---AGRFW-TITVA   90 (577)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~lg~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~---~Grk~-~~~~~   90 (577)
                      ++++-+---..++..++.+-....++..|.++.+|+|...+|.+..+.=+.-++.-|+.|.+.||.   +||+| -+.++
T Consensus        10 s~~eki~Yg~gd~~~~~~~~~~~~yLl~fYTdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g   89 (467)
T COG2211          10 SLKEKIGYGLGDFASNFAFGIVVLYLLFFYTDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWG   89 (467)
T ss_pred             cHHHHHhhcchhhHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHH
Confidence            444444445578888888889999999999999999999999999999999999999999999984   25544 56777


Q ss_pred             HHHHHHHHHHHHHhhhcCCCCCCCCCCCCcccccccchhHHHHHHHHHHHhccCCcccchhhhhhccCCCCCchhhhhhh
Q 008096           91 SIIYQIGMFSLTLSAILPQLRPPPCQGDQVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTW  170 (577)
Q Consensus        91 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~  170 (577)
                      .+..++...++..+..+.                .+.+....++.-.+.+++.........++.+|+-++.+     +|.
T Consensus        90 ~ip~~i~~~l~F~~p~~~----------------~~~k~~ya~vtY~l~~l~YT~vniPy~al~~~iT~d~~-----ER~  148 (467)
T COG2211          90 AIPFAIVAVLLFITPDFS----------------MTGKLIYALVTYMLLGLGYTLVNIPYGALGPEITQDPQ-----ERA  148 (467)
T ss_pred             hHHHHHHHHHHHcCCCcc----------------cCcchHHHHHHHHHHHHHHHheeCchhhcchhhcCCHH-----HHH
Confidence            777887777776554111                12355556677888899999999999999999987643     288


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHhhcc-------cccchhhhHHHHHHHHHHHHHHHHccccccccCC-CCC-hhhHHHHH
Q 008096          171 KYFNWYYFVMGAAVLVAVTVLVYIQD-------NVGWNWGLGIPTVAMFLSIIAFVFGYPLYRNLNP-AGS-PFVRLMQV  241 (577)
Q Consensus       171 ~~~~~~~~~~~ig~~lg~~i~~~l~~-------~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~  241 (577)
                      +..++-..+.++|..+...+.+.+..       ..||+..-.+.+++..+.++.+++..+|...++. ..+ ...++.+.
T Consensus       149 ~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~~~~~g~~~~~~~~~vi~~i~~l~~~~~v~ER~~~~~~~~~~~~~~~~~~  228 (467)
T COG2211         149 SLTSWRMVFASLGGLLVAVLFPPLVKLFGGGDKALGYQGTALVLGVIGVILLLFCFFNVKERVVETQPTKTGVKLKLKDS  228 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcccCccccCcccccccHHHH
Confidence            88999888888887776666554432       2366666555555555555554444332111111 100 00110100


Q ss_pred             HHHHHhhccccCCCCCcccccccchhhhhhcCCcccccccchhhhhhhhccccccCCCCCcccccchhhhhhhhhhhhhh
Q 008096          242 CVAAFRKRNLDMVSDPNVLYQNEELDASICLDGKLLHTKHMKFLDKAAIVTEEDDIKSPNLWRLNTVHRVEELKSVIRMG  321 (577)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~  321 (577)
                      +.                                                                  ...+.|..+..+
T Consensus       229 ~~------------------------------------------------------------------~~~~Nrp~~~~l  242 (467)
T COG2211         229 FL------------------------------------------------------------------LIFKNRPLLLLL  242 (467)
T ss_pred             HH------------------------------------------------------------------HHHccchHHHHH
Confidence            00                                                                  011122222222


Q ss_pred             hHHHHHHHHHHHhhccceeEEeeccccccccccccccccchhhhhhHHHHHHHHHhhhhhhhhccccccCCCCCCCchhH
Q 008096          322 PIWASGILLITAYAQQGTFSLQQAKSMDRHLTKSFQIPAGSMSVFTMVSMLSTIALYDRIIIPVARKFTGLDRGITFLHR  401 (577)
Q Consensus       322 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~  401 (577)
                      ...+..............++...... +..      ..+...........+++.++    ..++.+|++||+.       
T Consensus       243 ~~~l~~~~~~~i~~s~~~yy~~y~lg-~~~------l~~~~~~~~~~~~~l~~~~~----~p~L~~~~gkk~~-------  304 (467)
T COG2211         243 LMNLLLFIAFNIRGSIMVYYVTYVLG-DPE------LFAYLLLLASGAGLLIGLIL----WPRLVKKFGKKKL-------  304 (467)
T ss_pred             HHHHHHHHHHHHHhhhhheeEEEEcC-ChH------HHHHHHHHHHHHHHHHHHHh----HHHHHHHhchHHH-------
Confidence            22222222222222222232222111 111      11222222222222333344    3447777776654       


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccccchhhHHHHHHHHHHHHHHHHhhhhhhhhhcccC-------
Q 008096          402 MGIGFVISVLATLVAGFVEMKRKQAALAHGLVDKPHIIIPISVLWLVPQYSLHGIAEAFMSVGHLEFLYDQAP-------  474 (577)
Q Consensus       402 ~~ig~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~gi~~~~~~~~~~~~v~~~~P-------  474 (577)
                      +.+|.++.+++.++.-+.+                    ..+.+.+++..++.+++.+...+..|+++.|...       
T Consensus       305 ~~~~~~~~~i~~~~~~f~~--------------------~~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG  364 (467)
T COG2211         305 FLIGLLLLAVGYLLLYFTP--------------------AGSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTG  364 (467)
T ss_pred             HHHHHHHHHHHHHHHHhhc--------------------CcchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhC
Confidence            7888888888877766654                    2244555556688889999999999999888765       


Q ss_pred             cccHHHHHHHHHHHHhHHHHHHHHHHHHHhhhc
Q 008096          475 ESMRSTATALFWTANSIGNYVSTLLVTLVHKFS  507 (577)
Q Consensus       475 ~~~rg~~~gi~~~~~~lg~~l~~~i~~~v~~~~  507 (577)
                      .+.-|...|...+++-+|.+++..+.+++.+..
T Consensus       365 ~R~eGi~~s~~tF~~K~g~ala~~~~g~~L~~~  397 (467)
T COG2211         365 VRREGIVYSGMTFFRKLGLALAGFIPGWILGAI  397 (467)
T ss_pred             CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            366788889999999999999999999987765

>PRK11462 putative transporter; Provisional

Probab=99.66  E-value=5.7e-14  Score=151.93  Aligned_cols=175  Identities=11%  Similarity=0.177  Sum_probs=125.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhHhhhhchhhhhhhhhhc---cchhHH-HHHHHHHHHHHHH
Q 008096           24 ANEVCEKLAVVGFHANMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADTY---AGRFWT-ITVASIIYQIGMF   99 (577)
Q Consensus        24 ~~~~~~~~~~~~~~~~l~~~l~~~lg~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~---~Grk~~-~~~~~~~~~i~~~   99 (577)
                      ..++..++.+..+..++..|+++.+|++...+|.+..+.-+.-++.-|+.|+++||.   +||||. +.++.+.++++.+
T Consensus        16 ~g~~~~~~~~~~~~~~l~~fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~   95 (460)
T PRK11462         16 MGDAASHIIFDNVMLYMMFFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCV   95 (460)
T ss_pred             cchhhhhHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHH
Confidence            466677777788888999999999999999999999999999999999999999973   377654 5567677777766


Q ss_pred             HHHHhhhcCCCCCCCCCCCCcccccccchhHHHHHHHHHHHhccCCcccchhhhhhccCCCCCchhhhhhhhhhhHHHHH
Q 008096          100 SLTLSAILPQLRPPPCQGDQVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFV  179 (577)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  179 (577)
                      ++......+                .......+++.-++..++..+......++.+|+.++.+     +|.+..++...+
T Consensus        96 llf~~p~~s----------------~~~~~~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~-----eRt~l~s~r~~~  154 (460)
T PRK11462         96 LAYSTPDLS----------------MNGKMIYAAITYTLLTLLYTVVNIPYCALGGVITNDPT-----QRISLQSWRFVL  154 (460)
T ss_pred             HHHhCCCCC----------------cchHHHHHHHHHHHHHHHHHHHhccHHHHHHHhcCCHH-----HHHHHHHHHHHH
Confidence            655322000                01123345556667788999999999999999988643     288999999989


Q ss_pred             HHHHHHHHHHHHHhhccc-------ccchhhhHHHHHHHHHHHHHHH
Q 008096          180 MGAAVLVAVTVLVYIQDN-------VGWNWGLGIPTVAMFLSIIAFV  219 (577)
Q Consensus       180 ~~ig~~lg~~i~~~l~~~-------~gw~~~f~~~~~~~~~~~~~~~  219 (577)
                      .++|..+++.+...+...       .||+....+.+++.++..++.+
T Consensus       155 ~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~~ii~~i~~~i~~  201 (460)
T PRK11462        155 ATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAVLSVVAFMMLAFCF  201 (460)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHH
Confidence            999888887775444332       2466555444444444333333

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=99.58  E-value=5e-15  Score=142.22  Aligned_cols=147  Identities=11%  Similarity=0.117  Sum_probs=123.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhHhhhhchhhhhhhhhhccchhHHHHHHHHHHHHHHHHHHHhhhc
Q 008096           28 CEKLAVVGFHANMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADTYAGRFWTITVASIIYQIGMFSLTLSAIL  107 (577)
Q Consensus        28 ~~~~~~~~~~~~l~~~l~~~lg~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~i~~~~~~~~~~~  107 (577)
                      +.+...|.--.-+..+...+.+.+.++..++.+.++.-..+.+.++|++.||.+|-|..-++-+.+..+|.+..+.-.  
T Consensus        54 fgsyfcyd~p~alq~~fk~d~ni~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~fv~~GqliFa~Gg--  131 (459)
T KOG4686|consen   54 FGSYFCYDAPGALQIDFKLDSNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIFVFLGQLIFAAGG--  131 (459)
T ss_pred             ccceeecCCchhhhhhhhcccccceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHHHHHHHHHHHhch--
Confidence            344444555566777888888899999999999999999999999999999988988776666777778888887543  


Q ss_pred             CCCCCCCCCCCCcccccccchhHHHHHHHHHHHhccCCcccchhhhhhccCCCCCchhhhhhhhhhhHHHHHHHHHHHHH
Q 008096          108 PQLRPPPCQGDQVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAVLVA  187 (577)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~lg  187 (577)
                                       ...+.|.+.++|++.|+|.-....+-.+++.-+|..+|      .+..+|++.....+|+..-
T Consensus       132 -----------------i~~aFw~M~~GRF~FGIGgESlAVaQN~yav~wFKGKE------Ln~vfGlqlSvAR~GstvN  188 (459)
T KOG4686|consen  132 -----------------ISHAFWTMLAGRFLFGIGGESLAVAQNKYAVYWFKGKE------LNFVFGLQLSVARLGSTVN  188 (459)
T ss_pred             -----------------HHHHHHHHHhhheeeccCchhhhhhhcceeEEEecCcc------ccchhhHHHHHHHhhceee
Confidence                             23378999999999999999888888999999999999      9999999999999999888


Q ss_pred             HHHHHhhccccc
Q 008096          188 VTVLVYIQDNVG  199 (577)
Q Consensus       188 ~~i~~~l~~~~g  199 (577)
                      -.+.+++.+..+
T Consensus       189 f~lm~~ly~~~~  200 (459)
T KOG4686|consen  189 FLLMPFLYDTMG  200 (459)
T ss_pred             eeecHHHHHHHH
Confidence            888888776543

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=99.55  E-value=7.5e-12  Score=134.95  Aligned_cols=362  Identities=13%  Similarity=0.055  Sum_probs=195.2

Q ss_pred             HHHHHHHHHhHhhhhchhhhhhhhhhccchhH-HHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCcccccccchhHHH
Q 008096           54 KAANTLTNFGGTGSLTPLIGAFVADTYAGRFW-TITVASIIYQIGMFSLTLSAILPQLRPPPCQGDQVCKEADTGQLAIL  132 (577)
Q Consensus        54 ~~~~i~~~~~~~~~~~~~~~G~laDr~~Grk~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (577)
                      -.++..++..+..++..|+.|-++|+- |+|| .+.+..++..++.+++.+..                    +.+++..
T Consensus        71 ~~~~~~sis~l~~all~P~lGa~aD~~-~~Rk~~l~~~~~~~~~~~~~l~~v~--------------------~~~~~~~  129 (477)
T PF11700_consen   71 LWLYANSISGLLQALLAPFLGAIADYG-GRRKRFLLIFTLLGVLATALLWFVS--------------------PGQWWLA  129 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHccc-ccchHHHHHHHHHHHHHHHHHHHhC--------------------cchHHHH
Confidence            346778888999999999999999987 6555 55556666666777777653                    2255555


Q ss_pred             HHHHHHHHhccCCcccchhhhhhccCCCCCchhhh--------------------hhhhhhhHHHHHHHHHHHHHHHHHH
Q 008096          133 YASLLLAALGSGGIRPCVVAFGADQFDETDPKQAT--------------------KTWKYFNWYYFVMGAAVLVAVTVLV  192 (577)
Q Consensus       133 ~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~--------------------~r~~~~~~~~~~~~ig~~lg~~i~~  192 (577)
                      .+..++..++.+.......+++.|..++++..++.                    .|++..+.-.....+|+++..++.-
T Consensus       130 ~~l~iia~v~~~~~~vfyna~LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l  209 (477)
T PF11700_consen  130 LVLFIIANVGYEASNVFYNAYLPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISL  209 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHH
Confidence            56666667888888899999999999887631111                    0166666666667777777766543


Q ss_pred             hhccc--------ccchhhhHHHHHHHH-HHHHHHHHcccccc-ccCCCCC-hhhHHHHHHHHHHhhccccCCCCCcccc
Q 008096          193 YIQDN--------VGWNWGLGIPTVAMF-LSIIAFVFGYPLYR-NLNPAGS-PFVRLMQVCVAAFRKRNLDMVSDPNVLY  261 (577)
Q Consensus       193 ~l~~~--------~gw~~~f~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~  261 (577)
                      .+...        .+.|..+.+.++.-+ +++..+...+++.+ +..|.+. ..+.-.+.++..+++             
T Consensus       210 ~~~~~~~~~~~~~~~~r~~~~~~a~ww~vfsiP~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~t~k~-------------  276 (477)
T PF11700_consen  210 LLVISPGSTASNTWAIRVAFLIVALWWLVFSIPLFLWLPDRPGPRPLPSGSSYLRFGFKRLWRTFKE-------------  276 (477)
T ss_pred             HHHHcCCCccccchhhhHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCcchhHHHHHHHHHHHHHHH-------------
Confidence            33211        224666666555433 33333344333322 1111111 111111111111111             


Q ss_pred             cccchhhhhhcCCcccccccchhhhhhhhccccccCCCCCcccccchhhhhhhhhhhhhhhH-HHHHHHHHHHhhcccee
Q 008096          262 QNEELDASICLDGKLLHTKHMKFLDKAAIVTEEDDIKSPNLWRLNTVHRVEELKSVIRMGPI-WASGILLITAYAQQGTF  340 (577)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~l-~~~~~~~~~~~~~~~~~  340 (577)
                                                                       ..+.|.+.+++.- ++..-....... .   
T Consensus       277 -------------------------------------------------~~~~~~~~~fLia~~l~~dg~~ti~~-~---  303 (477)
T PF11700_consen  277 -------------------------------------------------IRKLRQLFLFLIAYFLYSDGVNTIIS-F---  303 (477)
T ss_pred             -------------------------------------------------HHhChHHHHHHHHHHHHHHHHHHHHH-H---
Confidence                                                             1111222222111 111101111000 0   


Q ss_pred             EEeecccccccccccccccc-chhhhhhHHHHHHHHHhhhhhhhhccccccCCCCCCCchhHHHHHHHHHHHHHHHHHHH
Q 008096          341 SLQQAKSMDRHLTKSFQIPA-GSMSVFTMVSMLSTIALYDRIIIPVARKFTGLDRGITFLHRMGIGFVISVLATLVAGFV  419 (577)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ig~~~~~l~~~~~~~~  419 (577)
                         ...+....+  +++... ..+..+..+..+++..+    ..++.||++.|.     .+.+.+++++..+..+...+.
T Consensus       304 ---~~i~a~~~l--g~s~~~l~~~~l~~~i~a~~Ga~~----~g~l~~r~g~k~-----~~~l~~~l~~~~~i~~~g~~G  369 (477)
T PF11700_consen  304 ---AGIYATEVL--GMSTTQLIVFGLVVQIVAIIGALL----FGWLQDRFGPKT-----KRTLLISLILWIIIPLYGLFG  369 (477)
T ss_pred             ---HHHHHHHhc--CcCHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhCCch-----hHHHHHHHHHHHHHHHHHHHH
Confidence               000111111  111111 11222233334444444    444677766442     122444444443322222221


Q ss_pred             HHHHHHHHHhcCCCCCCCccccchhhHHHHHHHHHHHHHHHHhhhhhhhhhcccCcccHHHHHHHHHHHHhHHHHHHHHH
Q 008096          420 EMKRKQAALAHGLVDKPHIIIPISVLWLVPQYSLHGIAEAFMSVGHLEFLYDQAPESMRSTATALFWTANSIGNYVSTLL  499 (577)
Q Consensus       420 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~gi~~~~~~~~~~~~v~~~~P~~~rg~~~gi~~~~~~lg~~l~~~i  499 (577)
                      .     .....         ...+.+.+.+.-++.|+..+...+..-++..++.|++..+...|++.+.+...+++||++
T Consensus       370 ~-----~~~~~---------g~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll  435 (477)
T PF11700_consen  370 F-----WPSFF---------GLKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLL  435 (477)
T ss_pred             h-----hhccc---------CcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHH
Confidence            0     00000         012333345556778999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhhcCCCCCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhh
Q 008096          500 VTLVHKFSAGPNGSNWLPDNNLNKGKLEYFYWLITLLQVVNVIYYFF  546 (577)
Q Consensus       500 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  546 (577)
                      ++.+.+.++.                ..+-+..+.++.++++++++.
T Consensus       436 ~g~i~~~tg~----------------~r~g~~~l~~lf~~gl~ll~~  466 (477)
T PF11700_consen  436 FGLITDATGS----------------QRYGFLFLLVLFLIGLILLFF  466 (477)
T ss_pred             HHHHHHHhCC----------------chhHHHHHHHHHHHHHHHHhh
Confidence            9999887632                233355666666666655543

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.54  E-value=1.2e-13  Score=150.92  Aligned_cols=181  Identities=10%  Similarity=0.071  Sum_probs=134.8

Q ss_pred             CcceehHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhHhhhhchhhhhhhhhhccchhHHHHHHHHHH
Q 008096           15 GIITMPFIFANEVCEKLAVVGFHANMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADTYAGRFWTITVASIIY   94 (577)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~lg~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~   94 (577)
                      +|+.....+...++..+.+|++..++|.|+++.+|++..+.+++.....++..++.++.|+++||+ |||+.+..+.++.
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-grr~~~~~~~~~~  326 (490)
T PRK10642        248 HWRSLLTCIGLVIATNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRF-GRRPFVILGSVAL  326 (490)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHH
Confidence            455544444455667788899999999999999999999989888888899999999999999998 9999988887655


Q ss_pred             HHHHHHHHHhhhcCCCCCCCCCCCCcccccccchhHHHHHHHHHHHhccCCcccchhhhhhccCCCCCchhhhhhhhhhh
Q 008096           95 QIGMFSLTLSAILPQLRPPPCQGDQVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFN  174 (577)
Q Consensus        95 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  174 (577)
                      .++.+.+....                   ...+...+++++++.+++.+...+...+++.|.+|++.      |+++++
T Consensus       327 ~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~p~~~------Rg~~~g  381 (490)
T PRK10642        327 FVLAIPAFILI-------------------NSNVIGLIFAGLLMLAVILNCFTGVMASTLPAMFPTHI------RYSALA  381 (490)
T ss_pred             HHHHHHHHHHH-------------------hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcc------chHHHH
Confidence            54433322111                   01145567788888888777777778888999999988      999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhcccc-cchhhhHHHHHHHHHHHHHHHHc
Q 008096          175 WYYFVMGAAVLVAVTVLVYIQDNV-GWNWGLGIPTVAMFLSIIAFVFG  221 (577)
Q Consensus       175 ~~~~~~~ig~~lg~~i~~~l~~~~-gw~~~f~~~~~~~~~~~~~~~~~  221 (577)
                      +.+....+++.++|.+.+++.+.. +|+.++++..+..++..+..++.
T Consensus       382 ~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~  429 (490)
T PRK10642        382 AAFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLITGVTM  429 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHh
Confidence            865556677788999999887654 46766665555555554444443

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=99.51  E-value=3.9e-11  Score=123.24  Aligned_cols=345  Identities=16%  Similarity=0.123  Sum_probs=207.9

Q ss_pred             HHHhcCCChHHHHHHHHHHhHhhhhchhhhhhhhhhccc-----hhH-HHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCC
Q 008096           44 LTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADTYAG-----RFW-TITVASIIYQIGMFSLTLSAILPQLRPPPCQG  117 (577)
Q Consensus        44 l~~~lg~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~G-----rk~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  117 (577)
                      |..+++.+..-.+...+...+.+. ..+..|+.||++ +     ||. -++.|.+.+..+..+.+++...-.-   .   
T Consensus         6 MIvEL~vpA~lv~~lval~~~~ap-~R~~~G~~SD~~-~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~---~---   77 (403)
T PF03209_consen    6 MIVELGVPAWLVALLVALHYLVAP-LRVWFGHRSDTH-PSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAE---S---   77 (403)
T ss_pred             HHHHhccHHHHHHHHHHHHHHHHH-HHHHhccccccC-cccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHcc---c---
Confidence            456889999888888887777665 589999999998 5     444 4667777777777777776422110   0   


Q ss_pred             CCcccccccchhHHHHHHHHHHHhccCCcccchhhhhhccCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhccc
Q 008096          118 DQVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAVLVAVTVLVYIQDN  197 (577)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~lg~~i~~~l~~~  197 (577)
                      ++..............+...+.|+|.+....+..++++|..|+++      |+++.++.+...-+|.+++.++.+.+.+.
T Consensus        78 ~~~~~~~~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~------R~~~v~ivw~Mli~G~iv~ai~~g~lL~~  151 (403)
T PF03209_consen   78 GQQSSGPFWLGLALAALAFLLYGLGVHASGTSFLALLADLAPEER------RPRVVAIVWVMLIVGIIVSAIVFGRLLDP  151 (403)
T ss_pred             ccccccccHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhh------hhhhHHHHHHHHHHHHHHHHHHHHHHccc
Confidence            000000111122334455667899999999999999999999988      99999999999999999999999988877


Q ss_pred             ccchhhh----HHHHHHHHHHHHHHHHccccccccCCCCChhhHHHHHHHHHHhhccccCCCCCcccccccchhhhhhcC
Q 008096          198 VGWNWGL----GIPTVAMFLSIIAFVFGYPLYRNLNPAGSPFVRLMQVCVAAFRKRNLDMVSDPNVLYQNEELDASICLD  273 (577)
Q Consensus       198 ~gw~~~f----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  273 (577)
                      ++-.-..    .++.+..++..+..+-..++.++..+..+                      .                 
T Consensus       152 ~s~~rL~~v~~~~a~i~~~l~~ia~wg~E~r~~~~~~~~~----------------------~-----------------  192 (403)
T PF03209_consen  152 FSPERLIQVIQGVALIALLLNLIALWGQEPRRSRRAAAAE----------------------R-----------------  192 (403)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcccccCCC----------------------C-----------------
Confidence            6532222    22223333333333333332221110000                      0                 


Q ss_pred             CcccccccchhhhhhhhccccccCCCCCcccccchhhhhhhhhhhhhhh-HHHHHHHHHHHhhccceeEEeecccccccc
Q 008096          274 GKLLHTKHMKFLDKAAIVTEEDDIKSPNLWRLNTVHRVEELKSVIRMGP-IWASGILLITAYAQQGTFSLQQAKSMDRHL  352 (577)
Q Consensus       274 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  352 (577)
                            +..++.+               .|+...     ..++..+++. +++....+++           |+...+++-
T Consensus       193 ------~~~~f~~---------------a~~~~~-----~~~~a~~f~~fl~l~t~a~~~-----------QD~iLEPyg  235 (403)
T PF03209_consen  193 ------PRPPFRE---------------AWRQVW-----ASPQARRFFVFLFLGTLAFFM-----------QDVILEPYG  235 (403)
T ss_pred             ------CCccHHH---------------HHHHHH-----hCCChhHHHHHHHHHHHHHHh-----------hHHHcCCch
Confidence                  0000110               010000     0011111111 1222222222           222233333


Q ss_pred             ccccccccc---hhhhhhHHHHHHHHHhhhhhhhhccccccCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008096          353 TKSFQIPAG---SMSVFTMVSMLSTIALYDRIIIPVARKFTGLDRGITFLHRMGIGFVISVLATLVAGFVEMKRKQAALA  429 (577)
Q Consensus       353 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ig~~~~~l~~~~~~~~~~~~~~~~~~  429 (577)
                      +.-++.+.+   .+..+-..+.+++....++    +..|..      ++.+...+|....++++.++....         
T Consensus       236 g~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~----~l~~~~------~~~~~a~~G~~~~~~~f~lii~a~---------  296 (403)
T PF03209_consen  236 GEVFGMSVGETTRLTAFWGGGTLLGMLLAGF----LLSRRL------GKKRTAALGCLLGALAFALIILAG---------  296 (403)
T ss_pred             hHHcCCCHHHHHHHHHHHHHHHHHHHHHHHH----HhcCCC------CchHHHHHHHHHHHHHHHHHHHHH---------
Confidence            212233333   3334444455555555444    222221      222335677777777776655544         


Q ss_pred             cCCCCCCCccccchhhHHHHHHHHHHHHHHHHhhhhhhhhhcccCcccHHHHHHHHHHHHhHHHHHHHHHHHHHhhhc
Q 008096          430 HGLVDKPHIIIPISVLWLVPQYSLHGIAEAFMSVGHLEFLYDQAPESMRSTATALFWTANSIGNYVSTLLVTLVHKFS  507 (577)
Q Consensus       430 ~~~~~~~~~~~~~~~~~l~~~~~l~gi~~~~~~~~~~~~v~~~~P~~~rg~~~gi~~~~~~lg~~l~~~i~~~v~~~~  507 (577)
                                ..-+.+.+....++.|++.+...........++.+++..|+.+|.+..++.++..++..+.+.+.|..
T Consensus       297 ----------~~~~~~~~~~~~~l~G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~  364 (403)
T PF03209_consen  297 ----------PLGSPWLFRPGVFLLGLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLV  364 (403)
T ss_pred             ----------hcccchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                      11245667788899999999999999999999999999999999999999999999999999988765

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.48  E-value=1.2e-12  Score=138.86  Aligned_cols=179  Identities=15%  Similarity=0.101  Sum_probs=136.5

Q ss_pred             CCCcceehHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhHhhhhchhhhhhhhhhccchhHHHHHHHH
Q 008096           13 KGGIITMPFIFANEVCEKLAVVGFHANMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADTYAGRFWTITVASI   92 (577)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~lg~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~   92 (577)
                      +.+++..+..+...+.....++....++|.|+++++|++..+.+++.+...+...++.++.|+++||+ |||+.+..+.+
T Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~-g~~~~~~~~~~  290 (393)
T PRK15011        212 RRNRRDTLLLFVICTLMWGTNSLYIINMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRL-GKRFLMRVAAV  290 (393)
T ss_pred             ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ChHHHHHHHHH
Confidence            33445444444444444455556667899999999999999999998888888888999999999998 99998887766


Q ss_pred             HHHHHHHHHHHhhhcCCCCCCCCCCCCcccccccchhHHHHHHHHHHHhccCCcccchhhhhhccCCCCCchhhhhhhhh
Q 008096           93 IYQIGMFSLTLSAILPQLRPPPCQGDQVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKY  172 (577)
Q Consensus        93 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~  172 (577)
                      ...+....+.+..                      +.+.+++.+++.+++.|...+...++..|.+|+ +      |+++
T Consensus       291 ~~~~~~~~~~~~~----------------------~~~~~l~~~~l~~~~~g~~~~~~~~~~~~~~p~-~------~g~~  341 (393)
T PRK15011        291 AGVCFYAGMLMAH----------------------SPAILLGLQLLNAIYIGILGGIGMLYFQDLMPG-Q------AGSA  341 (393)
T ss_pred             HHHHHHHHHHHHh----------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-C------cchH
Confidence            5555443333322                      455566778877777777667777888888874 4      7788


Q ss_pred             hhHHHHHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHHHHHHHHHc
Q 008096          173 FNWYYFVMGAAVLVAVTVLVYIQDNVGWNWGLGIPTVAMFLSIIAFVFG  221 (577)
Q Consensus       173 ~~~~~~~~~ig~~lg~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~  221 (577)
                      .++++...++|..+||.++|.+.+.+||+..|++..+..+++.+.....
T Consensus       342 ~~~~~~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~~  390 (393)
T PRK15011        342 TTLYTNTSRVGWIIAGSLAGIVAEIWNYHAVFWFALVMIIATLFCLLRI  390 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhh
Confidence            9998888999999999999999998999999988887777766665543

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=99.43  E-value=1.4e-12  Score=137.50  Aligned_cols=193  Identities=15%  Similarity=0.123  Sum_probs=154.8

Q ss_pred             CCCcccCCCcceehHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCCChHHHHHHHHHHhHhhhhchhhhhhhhhhccch-h
Q 008096            7 SHVNRKKGGIITMPFIFANEVCEKLAVVGFHANMISYLTT-QLHMPLTKAANTLTNFGGTGSLTPLIGAFVADTYAGR-F   84 (577)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~lg~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr-k   84 (577)
                      ..+++++.+||.+++.....+...+.+....+-+-.|+++ +.+.+.+..|+++++..++.++..+..|+.+.|. ++ |
T Consensus        24 ~~~~~~~t~wrsi~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~-~~~k  102 (488)
T KOG2325|consen   24 SPLDERKTNWRSIYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKT-GSVK  102 (488)
T ss_pred             ccccccCCchHhHHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhccccccc-CCcc
Confidence            3445779999999999999999999999999999999986 5889999999999999999999999999999997 64 8


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCcccccccchhHHHHHHHHHHHhccCCcccchhhhhhccCCCCCch
Q 008096           85 WTITVASIIYQIGMFSLTLSAILPQLRPPPCQGDQVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPK  164 (577)
Q Consensus        85 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~  164 (577)
                      +.+++|.++.++|.++.......|.                 ...+.++++|++.|+|.|. ....-+|+++....+|  
T Consensus       103 ~Pli~s~ii~~~g~llY~~l~~~~~-----------------~~~y~mL~~R~l~Gvg~~n-~a~lR~Y~a~~s~~~d--  162 (488)
T KOG2325|consen  103 KPLIVSFLIAIIGNLLYLALAYVPN-----------------GVKYLMLVARILTGVGVGN-FAVLRAYIADASTVED--  162 (488)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHhccc-----------------chHHHHHHHHHHcCcCccc-HHHHHHHHHhccCccc--
Confidence            8888899999999999844442332                 3678899999999999776 4777889999887777  


Q ss_pred             hhhhhhhhhhHHHHHHHHHHHHHHHHHHhhccc------------c-cchhhhHHHHHHHHHHHHHHHHcccc
Q 008096          165 QATKTWKYFNWYYFVMGAAVLVAVTVLVYIQDN------------V-GWNWGLGIPTVAMFLSIIAFVFGYPL  224 (577)
Q Consensus       165 ~~~~r~~~~~~~~~~~~ig~~lg~~i~~~l~~~------------~-gw~~~f~~~~~~~~~~~~~~~~~~~~  224 (577)
                          |.++++....+..+|.++||.+...+...            + -+..+-|+.+++.++.++.+.+..++
T Consensus       163 ----R~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E  231 (488)
T KOG2325|consen  163 ----RPRAFAATSGGFVLGIILGPTIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKE  231 (488)
T ss_pred             ----hHHHHHHhhhHHHHHHHHhHHHHHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheee
Confidence                88999988888888888888886554321            1 13445567777666666665555544

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.39  E-value=4.9e-12  Score=134.16  Aligned_cols=168  Identities=13%  Similarity=0.081  Sum_probs=135.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhHhhhhchhhhhhhhhhccchhHHHHHHHHHHHHHHHHHHHhhh
Q 008096           27 VCEKLAVVGFHANMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADTYAGRFWTITVASIIYQIGMFSLTLSAI  106 (577)
Q Consensus        27 ~~~~~~~~~~~~~l~~~l~~~lg~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~i~~~~~~~~~~  106 (577)
                      .+..+.++....+++.|+.+ .|+  .+.++..+.+.++..++.++.|++.||+ |+|+.+..+.++..++..+..+.. 
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~~~~~~~~~~~~~~~~~~~~-  300 (399)
T PRK05122        226 ALASIGFGTIATFITLYYAA-RGW--DGAALALTLFGVAFVGARLLFGNLINRL-GGLRVAIVSLLVEILGLLLLWLAP-  300 (399)
T ss_pred             HHHHHHHHHHHHHHHHHHHH-ccc--ccchHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHHhc-
Confidence            34455566677788888864 465  3456677788888899999999999998 999999988888888777766543 


Q ss_pred             cCCCCCCCCCCCCcccccccchhHHHHHHHHHHHhccCCcccchhhhhhccCCCCCchhhhhhhhhhhHHHHHHHHHHHH
Q 008096          107 LPQLRPPPCQGDQVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAVLV  186 (577)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~l  186 (577)
                                           +.+.+++.+++.|++.+...|...+...|.+|+++      |+++.++++...++|..+
T Consensus       301 ---------------------~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------~g~~~g~~~~~~~~g~~~  353 (399)
T PRK05122        301 ---------------------SPWMALIGAALTGFGFSLVFPALGVEAVKRVPPQN------RGAALGAYSVFLDLSLGI  353 (399)
T ss_pred             ---------------------cHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCHHH------HHHHHHHHHHHHHHHHHH
Confidence                                 45567778889999999888888888889888777      999999999999999999


Q ss_pred             HHHHHHhhcccccchhhhHHHHHHHHHHHHHHHHcccccc
Q 008096          187 AVTVLVYIQDNVGWNWGLGIPTVAMFLSIIAFVFGYPLYR  226 (577)
Q Consensus       187 g~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~  226 (577)
                      ++.+.|++.+..||++.|++.++..+++.+......++.+
T Consensus       354 ~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  393 (399)
T PRK05122        354 TGPLAGLVASWFGYPSIFLAAALAALLGLALTWLLYRRAP  393 (399)
T ss_pred             HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence            9999999999899999999888877777666655554433

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.39  E-value=5e-12  Score=137.22  Aligned_cols=174  Identities=13%  Similarity=0.008  Sum_probs=130.9

Q ss_pred             ehHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhHhhhhchhhhhhhhhhccchhHHHHHHHHHHHHHH
Q 008096           19 MPFIFANEVCEKLAVVGFHANMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADTYAGRFWTITVASIIYQIGM   98 (577)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~lg~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~i~~   98 (577)
                      ++.+....++....++++..++|.|+++++|+|..++++......++..++.+++|+++||+ |||+.+.....+..++.
T Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~-g~r~~~~~~~~~~~~~~  338 (467)
T PRK09556        260 IWLLCFANIFLYIVRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLA-NGRRALVACIALALIIF  338 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHH
Confidence            45555566677777788889999999999999999999999999999999999999999998 98887766544444333


Q ss_pred             HHHHHhhhcCCCCCCCCCCCCcccccccchhHHHHHHHHHHHhccCCcccchhhhhhccCCCCCchhhhhhhhhhhHHHH
Q 008096           99 FSLTLSAILPQLRPPPCQGDQVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYF  178 (577)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~  178 (577)
                      ..+.+..  .                  .+....++.+++.|++.............|.+|+++      |+++.++.+.
T Consensus       339 ~~~~~~~--~------------------~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~~~------~g~a~gi~~~  392 (467)
T PRK09556        339 TLGVYQH--A------------------TSEYMYLASLFALGFLVFGPQLLIGVAAVGFVPKKA------IGVANGIKGT  392 (467)
T ss_pred             HHHHHHh--c------------------CcHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcchhh------HHHHHHHHHH
Confidence            2222211  1                  134455567777776543333333456679999888      9999999999


Q ss_pred             HHHH-HHHHHHHHHHhhcc------------cccchhhhHHHHHHHHHHHHHHH
Q 008096          179 VMGA-AVLVAVTVLVYIQD------------NVGWNWGLGIPTVAMFLSIIAFV  219 (577)
Q Consensus       179 ~~~i-g~~lg~~i~~~l~~------------~~gw~~~f~~~~~~~~~~~~~~~  219 (577)
                      ..++ |..++|.+.|++.+            ..||+..|++..+..+++.+...
T Consensus       393 ~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~  446 (467)
T PRK09556        393 FAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAALDIAAIGCICLMA  446 (467)
T ss_pred             HHHHHhHHHHhhhHHHHhcccccccccccccccChHHHHHHHHHHHHHHHHHHH
Confidence            9886 77999999999988            57899999888777766655544

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.39  E-value=8.5e-12  Score=128.58  Aligned_cols=172  Identities=18%  Similarity=0.244  Sum_probs=152.3

Q ss_pred             eehHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhHhhhhchhhhhhhhhhccchhH-HHHHHHHHHHH
Q 008096           18 TMPFIFANEVCEKLAVVGFHANMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADTYAGRFW-TITVASIIYQI   96 (577)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~lg~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grk~-~~~~~~~~~~i   96 (577)
                      .++......++..........+++.++.+.+|.+..+.+++.....++..++.++.|++.||+ |||+ .+..+.++..+
T Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~i  254 (352)
T cd06174         176 LLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRL-GRRRLLLLIGLLLAAL  254 (352)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHH
Confidence            344455566777777888889999999988899999999999999999999999999999998 9999 99999999888


Q ss_pred             HHHHHHHhhhcCCCCCCCCCCCCcccccccchhHHHHHHHHHHHhccCCcccchhhhhhccCCCCCchhhhhhhhhhhHH
Q 008096           97 GMFSLTLSAILPQLRPPPCQGDQVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWY  176 (577)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  176 (577)
                      +.+.+.+..                      +.+..++..++.|++.+...+...+++.|.+|+++      |++.++++
T Consensus       255 ~~~~~~~~~----------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~  306 (352)
T cd06174         255 GLLLLALAP----------------------SLALLLVALLLLGFGLGFAFPALLTLASELAPPEA------RGTASGLF  306 (352)
T ss_pred             HHHHHHHhc----------------------cHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHH------HHHHHHHH
Confidence            888887654                      56778889999999999999999999999999877      99999999


Q ss_pred             HHHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHHHHHHH
Q 008096          177 YFVMGAAVLVAVTVLVYIQDNVGWNWGLGIPTVAMFLSIIAF  218 (577)
Q Consensus       177 ~~~~~ig~~lg~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~  218 (577)
                      +...++|..+++.+.+.+.+..+|+..+++.++..+++.+..
T Consensus       307 ~~~~~~~~~i~~~i~g~l~~~~~~~~~~~~~~~~~~i~~i~~  348 (352)
T cd06174         307 NTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALLL  348 (352)
T ss_pred             HHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHh
Confidence            999999999999999999988999999998888777665554

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.36  E-value=1.4e-11  Score=129.03  Aligned_cols=167  Identities=13%  Similarity=0.060  Sum_probs=132.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhHhhhhchhhhhhhhhhccchhHHHHHHHHHHHHHHHHHHH
Q 008096           24 ANEVCEKLAVVGFHANMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADTYAGRFWTITVASIIYQIGMFSLTL  103 (577)
Q Consensus        24 ~~~~~~~~~~~~~~~~l~~~l~~~lg~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~i~~~~~~~  103 (577)
                      ...++...........+|.|+++++|.+..+.+++.+...+...++.++.|+++||+ |||+.+.++.++..+......+
T Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~~~~~~~~~~~~~~~  284 (375)
T TIGR00899       206 VACTLMWGCNILYIINMPLLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRF-GKRRLMLLAALAGVAFYTGLAA  284 (375)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-cchhHHHHHHHHHHHHHHHHHH
Confidence            333444444445566789999999999999999998888778888889999999998 9999988877665555444443


Q ss_pred             hhhcCCCCCCCCCCCCcccccccchhHHHHHHHHHHHhccCCcccchhhhhhccCCCCCchhhhhhhhhhhHHHHHHHHH
Q 008096          104 SAILPQLRPPPCQGDQVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAA  183 (577)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig  183 (577)
                      ..                      +.+.+++.+++.|++.+...+...++..|..|+ +      ++++.++++...++|
T Consensus       285 ~~----------------------~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~-~------~~~~~~~~~~~~~~g  335 (375)
T TIGR00899       285 DN----------------------SLWALLMLQLLNAIFIGILAGIGMLYFQDLMPG-R------AGAATTLYTNTGRVG  335 (375)
T ss_pred             HH----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc-h------hhHHHHHHHHHHHHH
Confidence            33                      556677778888988888888888888998874 3      568899999999999


Q ss_pred             HHHHHHHHHhhcccccchhhhHHHHHHHHHHHHHHHH
Q 008096          184 VLVAVTVLVYIQDNVGWNWGLGIPTVAMFLSIIAFVF  220 (577)
Q Consensus       184 ~~lg~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~  220 (577)
                      ..++|.+.|++.+..||+..|++.++..+++.+...+
T Consensus       336 ~~~g~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~  372 (375)
T TIGR00899       336 WIIAGSVGGILAERWSYHAVYWFAIVMLIVALFCLLL  372 (375)
T ss_pred             HHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhe
Confidence            9999999999999899999999888877766665443

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.36  E-value=5.2e-12  Score=132.58  Aligned_cols=170  Identities=14%  Similarity=0.038  Sum_probs=132.4

Q ss_pred             CcceehHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhHhhhhchhhhhhhhhhccchhHHHHHHHHHH
Q 008096           15 GIITMPFIFANEVCEKLAVVGFHANMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADTYAGRFWTITVASIIY   94 (577)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~lg~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~   94 (577)
                      +++..+......++.....+....++|.|+++++|++..+.+.+.....++..++.++.|+++||+ |||+.+..+..+.
T Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~~~  295 (394)
T TIGR00883       217 HRKPFLLGLGLVIATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRI-GRRPVLIIFTVLA  295 (394)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-chHHHHHHHHHHH
Confidence            333455556677777788888889999999999999999999999999999999999999999998 9999877655544


Q ss_pred             HHHHH-HH-HHhhhcCCCCCCCCCCCCcccccccchhHHHHHHHHHHHhccCCcccchhhhhhccCCCCCchhhhhhhhh
Q 008096           95 QIGMF-SL-TLSAILPQLRPPPCQGDQVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKY  172 (577)
Q Consensus        95 ~i~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~  172 (577)
                      .+... .. .+..                    ..+.+.+++..++.+++.+...+...+++.|.+|+++      |+++
T Consensus       296 ~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~~~~  349 (394)
T TIGR00883       296 ALLAVPLLMALLD--------------------SGSFTLFFFLVLGLALIGGMYTGPMGSFLPELFPTEV------RYTG  349 (394)
T ss_pred             HHHHHHHHHHHhc--------------------CCchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCccc------eeeE
Confidence            43331 11 1111                    1145556677788888888889999999999999887      8888


Q ss_pred             hhH-HHHHHHHHHHHHHHHHHhhccccc-chhhhHHHHHHH
Q 008096          173 FNW-YYFVMGAAVLVAVTVLVYIQDNVG-WNWGLGIPTVAM  211 (577)
Q Consensus       173 ~~~-~~~~~~ig~~lg~~i~~~l~~~~g-w~~~f~~~~~~~  211 (577)
                      .++ ++.+..+|..++|.++|++.+..| |+..++......
T Consensus       350 ~~~~~~~~~~~g~~~~p~~~g~l~~~~g~~~~~~~~~~~~~  390 (394)
T TIGR00883       350 ASLAYNLAGAIFGGFAPYIAAALVAMTGDWYAIGYYLAALA  390 (394)
T ss_pred             eeehhHhHHHHHhhHHHHHHHHHHHHcCcchhHHHHHHHHH
Confidence            888 455567899999999999998888 887666555443

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>PRK03699 putative transporter; Provisional

Probab=99.36  E-value=1.1e-11  Score=131.48  Aligned_cols=168  Identities=17%  Similarity=0.145  Sum_probs=132.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhHhhhhchhhhhhhhhhccchhHHHHHHHHHHHHHHH
Q 008096           20 PFIFANEVCEKLAVVGFHANMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADTYAGRFWTITVASIIYQIGMF   99 (577)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~lg~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~i~~~   99 (577)
                      +++....++.....+++..++|.|+++++|+|..+.+++.+.+.++..++.+++|+++||+ +||+.+.....+..+...
T Consensus       208 ~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~-~~~~~l~~~~~~~~~~~~  286 (394)
T PRK03699        208 LFLAIAALLYILAQLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFF-DLQRILTVLAGLALVLMY  286 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHh-chhhHHHHHHHHHHHHHH
Confidence            3334455566667788889999999999999999999999999999999999999999998 999998877766666555


Q ss_pred             HHHHhhhcCCCCCCCCCCCCcccccccchhHHHHHHHHHHHhccCCcccchhhhhhccCCCCCchhhhhhhhhhhHHHHH
Q 008096          100 SLTLSAILPQLRPPPCQGDQVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFV  179 (577)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  179 (577)
                      +.....                      +...+.+..++.|++.+...+...++..|..|++       +++..+.....
T Consensus       287 ~~~~~~----------------------~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~-------~~~~~g~~~~~  337 (394)
T PRK03699        287 LFVNTD----------------------DPSHLLYAILGLGFFSSAIYTTIITLGSQQTKVA-------SPKLVNFILTC  337 (394)
T ss_pred             HHHHcC----------------------CchHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC-------CHHHHHHHHHh
Confidence            444332                      3444555667788888888888888888776633       34557777888


Q ss_pred             HHHHHHHHHHHHHhhcccccchhhhHHHHHHHHHHHHH
Q 008096          180 MGAAVLVAVTVLVYIQDNVGWNWGLGIPTVAMFLSIIA  217 (577)
Q Consensus       180 ~~ig~~lg~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~  217 (577)
                      .++|..++|.+.|++.+..||+..+++.++..+++.+.
T Consensus       338 ~~~g~~i~p~~~G~l~~~~g~~~~~~~~~~~~~~~~~~  375 (394)
T PRK03699        338 GTIGTMLTFVVTSPIVAHFGLQAALLTANGLYAVVFVM  375 (394)
T ss_pred             hhHHHHHHHHHHHHHHHHhCchhhhhhhHHHHHHHHHH
Confidence            89999999999999999999999998877766655443

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.36  E-value=7.1e-12  Score=141.24  Aligned_cols=136  Identities=11%  Similarity=-0.001  Sum_probs=110.4

Q ss_pred             HHHHHHHhHhhhhchhhhhhhhhhccchhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCcccccccchhHHHHHH
Q 008096           56 ANTLTNFGGTGSLTPLIGAFVADTYAGRFWTITVASIIYQIGMFSLTLSAILPQLRPPPCQGDQVCKEADTGQLAILYAS  135 (577)
Q Consensus        56 ~~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (577)
                      .....+..++..++.+++|+++||+ |||+++.++.++.+++.++++++.                      +...+++.
T Consensus       598 ~~~~~l~~l~~i~G~il~g~L~Dr~-GRr~~l~~~~~lsai~~ll~~~~~----------------------s~~~ll~~  654 (742)
T TIGR01299       598 YFVNFLGTLAVLPGNIVSALLMDKI-GRLRMLAGSMVLSCISCFFLSFGN----------------------SESAMIAL  654 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHHHHHc----------------------cHHHHHHH
Confidence            3445566688899999999999998 999999999999888888877755                      34456677


Q ss_pred             HHHHHhccCCcccchhhhhhccCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHHHH
Q 008096          136 LLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAVLVAVTVLVYIQDNVGWNWGLGIPTVAMFLSI  215 (577)
Q Consensus       136 ~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~lg~~i~~~l~~~~gw~~~f~~~~~~~~~~~  215 (577)
                      +++.+++.++..+...++++|++|.+.      |++++++.+....+|.++||.+++.+... +...+|++.+++.+++.
T Consensus       655 ~~l~g~~~~~~~~~~~a~~aEl~Pt~~------Rgta~Gi~~~~~rlGaiigp~i~g~L~~~-~~~~pf~i~a~~lll~~  727 (742)
T TIGR01299       655 LCLFGGLSIAAWNALDVLTVELYPSDK------RATAFGFLNALCKAAAVLGILIFGSFVGI-TKAAPILFASAALACGG  727 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHH
Confidence            778888888888999999999999887      99999999999999999999999987653 45667777776666655


Q ss_pred             HHHHHc
Q 008096          216 IAFVFG  221 (577)
Q Consensus       216 ~~~~~~  221 (577)
                      ++..+.
T Consensus       728 ll~~~L  733 (742)
T TIGR01299       728 LLALKL  733 (742)
T ss_pred             HHHHhC
Confidence            554443

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>PRK09952 shikimate transporter; Provisional

Probab=99.36  E-value=1.4e-11  Score=132.48  Aligned_cols=182  Identities=16%  Similarity=0.137  Sum_probs=133.7

Q ss_pred             CcceehHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhHhhhhchhhhhhhhhhccchhHHHHHHHHHH
Q 008096           15 GIITMPFIFANEVCEKLAVVGFHANMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADTYAGRFWTITVASIIY   94 (577)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~lg~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~   94 (577)
                      +++.....+...++..+.+|...++++.|+++.+|++......+.........++.++.|+++||+ |||+++..+.++.
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~-grr~~~~~~~~~~  326 (438)
T PRK09952        248 HPGAFLKIIALRLCELLTMYIVTAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRF-GRRRVYITGALIG  326 (438)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHH
Confidence            444444445566777888899999999999999999998777777777777888889999999998 9999988887665


Q ss_pred             HHHHHHHHHhhhcCCCCCCCCCCCCcccccccchhHHHHHHHHHHHhccCCcccchhhhhhccCCCCCchhhhhhhhhhh
Q 008096           95 QIGMFSLTLSAILPQLRPPPCQGDQVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFN  174 (577)
Q Consensus        95 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  174 (577)
                      .++.+.+......                  ..+...+++..++.+++.+...+...++.+|.+|.+.      |+.+.+
T Consensus       327 ~~~~~~~~~~~~~------------------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~------r~tg~g  382 (438)
T PRK09952        327 TLSAFPFFMALEA------------------QSIFWIVFFSIMLANIAHDMVVCVQQPMFTEMFGASY------RYSGAG  382 (438)
T ss_pred             HHHHHHHHHHHHc------------------CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcch------hHHHHh
Confidence            5544433332100                  0123344455666788888888888999999999877      888888


Q ss_pred             HHH-HHHHHHHHHHHHHHHhhcccc--cchhhhHHHHHHHHHHHHHHHHc
Q 008096          175 WYY-FVMGAAVLVAVTVLVYIQDNV--GWNWGLGIPTVAMFLSIIAFVFG  221 (577)
Q Consensus       175 ~~~-~~~~ig~~lg~~i~~~l~~~~--gw~~~f~~~~~~~~~~~~~~~~~  221 (577)
                      +.+ .+..+|+.++|.+.+++.+..  +|...+.+.++..+++.+..+..
T Consensus       383 ~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~~~~  432 (438)
T PRK09952        383 VGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTALLM  432 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHc
Confidence            844 445689999999999987643  47777777766666665555443

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.36  E-value=8.7e-12  Score=130.07  Aligned_cols=168  Identities=11%  Similarity=0.092  Sum_probs=135.0

Q ss_pred             ehHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhHhhhhchhhhhhhhhhccchhHHHHHHHHHHHHHH
Q 008096           19 MPFIFANEVCEKLAVVGFHANMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADTYAGRFWTITVASIIYQIGM   98 (577)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~lg~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~i~~   98 (577)
                      .+.+....++..+.......+.+.|. +++|.+.++.+++.+.+.++..++.++.|+++||+ |||+.+.++.++..++.
T Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~~~~~~~  284 (377)
T TIGR00890       207 FWVLYLSFFLNAVSGLLLIGLYKPYG-QSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKI-GRQKTMSIVFGISAVGM  284 (377)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhhhhhHHHHHHHHHH
Confidence            33444444455555555566667775 56899999999999999999999999999999998 99999999988888887


Q ss_pred             HHHHHhhhcCCCCCCCCCCCCcccccccchhHHHHHHHHHHHhccCCcccchhhhhhccCCCCCchhhhhhhhhhhHHHH
Q 008096           99 FSLTLSAILPQLRPPPCQGDQVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYF  178 (577)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~  178 (577)
                      +++.+..+                    .+...++...++.+++.+...+..+++..|.+|+++      |+++.++++.
T Consensus       285 ~~~~~~~~--------------------~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~------~~~~~g~~~~  338 (377)
T TIGR00890       285 AAMLFIPM--------------------LNDVLFLATVALVFFTWGGTISLFPSLVSDIFGPAN------SAANYGFLYT  338 (377)
T ss_pred             HHHHHccc--------------------chhHHHHHHHHHHHHHhccchhccHHHHHHHhhhhh------hhhHhHHHHH
Confidence            77665431                    122334456777888888888888999999999887      9999999999


Q ss_pred             HHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHHH
Q 008096          179 VMGAAVLVAVTVLVYIQDNVGWNWGLGIPTVAMFLS  214 (577)
Q Consensus       179 ~~~ig~~lg~~i~~~l~~~~gw~~~f~~~~~~~~~~  214 (577)
                      ..++|..++|.+.|.+.+..||++.|.+.+++.+++
T Consensus       339 ~~~~g~~~~~~~~g~l~~~~g~~~~f~~~~~~~~~~  374 (377)
T TIGR00890       339 AKAVAGIFGGLIASHALTEIGFEYTFIVTGAFALTS  374 (377)
T ss_pred             HHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHh
Confidence            999999999999999999999999998877765554

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=99.36  E-value=2e-10  Score=117.72  Aligned_cols=344  Identities=13%  Similarity=0.037  Sum_probs=192.0

Q ss_pred             HHHHHHHHHHHhcCC-------ChHHHHHHHHHHhHhhhhchhhhhhhhhhccchhHHHHHHHHHHHHHHHHHHHhhhcC
Q 008096           36 FHANMISYLTTQLHM-------PLTKAANTLTNFGGTGSLTPLIGAFVADTYAGRFWTITVASIIYQIGMFSLTLSAILP  108 (577)
Q Consensus        36 ~~~~l~~~l~~~lg~-------s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~i~~~~~~~~~~~~  108 (577)
                      ...++|.|+++..+-       +.+-.+...++..+..++..|+.|.++|+..-||+.+.+...+..++++++.++.+  
T Consensus        34 tt~ifply~~~~~~~~g~~~~~~~a~~gy~~aia~llia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i~~--  111 (438)
T COG2270          34 TTFIFPLYFTSVAGAGGVDPASSTAYWGYASAIAGLLIALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWFIPP--  111 (438)
T ss_pred             eeehhHHHHHHHHhhcCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHhCC--
Confidence            345668888876543       33455677788888888999999999999833666677777777788888887651  


Q ss_pred             CCCCCCCCCCCcccccccchhHHHHHHHHHHHhccCCcccchhhhhhccCCCCCchhhhhhhhhhhHHHHHHHHHHHHHH
Q 008096          109 QLRPPPCQGDQVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAVLVAV  188 (577)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~lg~  188 (577)
                                       ..+++...+...+..++..+......+++.+..++++.+|.++++.+++      .+|+.+.-
T Consensus       112 -----------------~s~~~~~l~~~il~~i~~~~s~Vfyds~L~~~~~k~~~~riS~lg~~~g------ylgs~i~l  168 (438)
T COG2270         112 -----------------GSYLLLLLLFLILASIGFEFSNVFYDSMLPRLTTKDNMGRISGLGWALG------YLGSVILL  168 (438)
T ss_pred             -----------------CchHHHHHHHHHHHHHhcchhheehhhHhhhhcCccccCcccccccccc------cccchHHH
Confidence                             1256777777888899999999999999999999887555555444443      34444433


Q ss_pred             HHH--Hh-hc---------------ccccchhhhHHHHHHHHHHHHHHHHccccccccC-CCCChhhHHHHHHHHHHhhc
Q 008096          189 TVL--VY-IQ---------------DNVGWNWGLGIPTVAMFLSIIAFVFGYPLYRNLN-PAGSPFVRLMQVCVAAFRKR  249 (577)
Q Consensus       189 ~i~--~~-l~---------------~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  249 (577)
                      +.+  +. ..               +...-|.++.++++..++..+-++...++....+ +..+..+.-.+.+...++  
T Consensus       169 i~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ri~~~l~A~W~li~~iPm~~~v~~~~~~~~~~~~~l~~g~k~L~~t~k--  246 (438)
T COG2270         169 IFVVLGFALGQQTGITIILLGLPPADGEDVRITGLLAALWWLLFALPMILNVHDAEKISSPPPTALRNGFKELKSTFK--  246 (438)
T ss_pred             HHHHHHHhcccccceeEEeeccCccccccchhHHHHHHHHHHHHHhHHHhcccccccccccchHHHHHHHHHHHHHHH--
Confidence            332  11 11               1112344444444443333333333332221111 111111110111111111  


Q ss_pred             cccCCCCCcccccccchhhhhhcCCcccccccchhhhhhhhccccccCCCCCcccccchhhhhhhhhhhhhhhHHH-HHH
Q 008096          250 NLDMVSDPNVLYQNEELDASICLDGKLLHTKHMKFLDKAAIVTEEDDIKSPNLWRLNTVHRVEELKSVIRMGPIWA-SGI  328 (577)
Q Consensus       250 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~l~~-~~~  328 (577)
                                                                                  ...++|.+.+++.-.. ..=
T Consensus       247 ------------------------------------------------------------~i~~~~~i~~FLiA~~~~~D  266 (438)
T COG2270         247 ------------------------------------------------------------EIRGRKNLVLFLIARFFYID  266 (438)
T ss_pred             ------------------------------------------------------------HHhcccchHHHHHHHHHHHh
Confidence                                                                        1111122221111100 000


Q ss_pred             HHHHHhhccceeEEeeccccccccccccccc-cchhhhhhHHHHHHHHHhhhhhhhhccccccCCCCCCCchhHHHHHHH
Q 008096          329 LLITAYAQQGTFSLQQAKSMDRHLTKSFQIP-AGSMSVFTMVSMLSTIALYDRIIIPVARKFTGLDRGITFLHRMGIGFV  407 (577)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ig~~  407 (577)
                      ........ .+.      +-...+  +++.. -..+.....+..+++..+    ..++.+|++-|++       +.++++
T Consensus       267 Gv~til~~-~~~------fg~~~~--gls~~~lll~g~~~~vvA~lg~ii----~g~Ld~rfg~k~v-------l~~~lv  326 (438)
T COG2270         267 GVNTILAM-GGV------FGAADL--GLSSTELLLIGIALSVVAALGAII----AGFLDERFGSKPV-------LMIGLV  326 (438)
T ss_pred             hHHHHHHH-HHH------HHHHHc--CccHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhCCcee-------ehHHHH
Confidence            00000000 000      000001  11111 112233333334444444    3347777765554       677777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccccchhhHHHHHHHHHHHHHHHHhhhhhhhhhcccCcccHHHHHHHHHH
Q 008096          408 ISVLATLVAGFVEMKRKQAALAHGLVDKPHIIIPISVLWLVPQYSLHGIAEAFMSVGHLEFLYDQAPESMRSTATALFWT  487 (577)
Q Consensus       408 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~gi~~~~~~~~~~~~v~~~~P~~~rg~~~gi~~~  487 (577)
                      ...+.++...+..                      .....++.-++.|...+.....+=++..+++|+++-+...|++++
T Consensus       327 i~~~~~~~~~~~~----------------------~~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyal  384 (438)
T COG2270         327 ILSIAALYLIFLE----------------------GELDFWILGLLVGTSLGGAQASSRSYLARLVPKGKEGRFFGLYAL  384 (438)
T ss_pred             HHHHHHHHHHHcc----------------------ccHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCccccceeehhhh
Confidence            7666555444443                      112223334667777788888888899999999999999999999


Q ss_pred             HHhHHHHHHHHHHHHHhhhcC
Q 008096          488 ANSIGNYVSTLLVTLVHKFSA  508 (577)
Q Consensus       488 ~~~lg~~l~~~i~~~v~~~~~  508 (577)
                      .+..+.+++|.+++.+.+.++
T Consensus       385 tgra~S~~gp~lv~v~t~iTg  405 (438)
T COG2270         385 TGRAASFLGPFLVAVITQITG  405 (438)
T ss_pred             hhhHHHHHHHHHHHHHHHHhc
Confidence            999999999999999988774

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.35  E-value=7.9e-11  Score=121.26  Aligned_cols=387  Identities=12%  Similarity=0.038  Sum_probs=225.5

Q ss_pred             HHHHHHHHHHhcCCChHHHHHHHHHHhHhhhhchhhhhhhhhhccchhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCC
Q 008096           37 HANMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADTYAGRFWTITVASIIYQIGMFSLTLSAILPQLRPPPCQ  116 (577)
Q Consensus        37 ~~~l~~~l~~~lg~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  116 (577)
                      .+.+..|....+| +...+-|..-+|.+.+....+++-|+.|++ |=|.++.++..+..+|..+=.++. .|.+-     
T Consensus        64 ya~i~n~~~~~Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~-GLR~a~llgt~ln~iGa~Ir~iss-~p~v~-----  135 (480)
T KOG2563|consen   64 YAPINNYVNSFYG-SSSAADWLSMIYMVVSVPFGFAAMWILDKF-GLRTALLLGTVLNGIGAWIRLISS-LPFVP-----  135 (480)
T ss_pred             ehhHHHHHHHHhc-chHHHHHHHHHHHHHHHHHhhHHHHhhccc-chHHHHHHHHHHHHHHHHHhhhcc-Ccccc-----
Confidence            3455667777788 888889999999999999999999999998 999999999999999988777664 33211     


Q ss_pred             CCCcccccccchhH--HHHHHHHHHHhccCCcccchhhhhhccCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHHHHHhh
Q 008096          117 GDQVCKEADTGQLA--ILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAVLVAVTVLVYI  194 (577)
Q Consensus       117 ~~~~~~~~~~~~~~--~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~lg~~i~~~l  194 (577)
                                ...+  +...+-.+.+.+.-++....+-..+-+||+++      |..+..+-.++..+|..+|.++...+
T Consensus       136 ----------~~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~q------ra~A~~~~v~~n~LGvavg~llppil  199 (480)
T KOG2563|consen  136 ----------PLFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQ------RAIATVLGVMGNPLGVAVGFLLPPIL  199 (480)
T ss_pred             ----------ccchhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcch------hhhhhhHHHhcchHHHHHHhhcccee
Confidence                      1334  77788888899888888887888889999998      99999888888778877777666655


Q ss_pred             cccc------cchh--hhHHHHHHHHHHHHHHHHccccccccCCCCChhhHHHHHHHHHHhhccccCCCCCcccccccch
Q 008096          195 QDNV------GWNW--GLGIPTVAMFLSIIAFVFGYPLYRNLNPAGSPFVRLMQVCVAAFRKRNLDMVSDPNVLYQNEEL  266 (577)
Q Consensus       195 ~~~~------gw~~--~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  266 (577)
                      ..+.      .|..  .|+....+..+.++...+.+++.++.+|..+..+.            +                
T Consensus       200 V~~~~~~~~~~~~~~~~f~~~~~l~~l~l~l~~~~~~~~P~tPps~s~~~~------------~----------------  251 (480)
T KOG2563|consen  200 VPSSKDSEDNSWLFFTLFLGVECLAALLLALVLFVFTKKPPTPPSASQAAL------------Q----------------  251 (480)
T ss_pred             cCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCchhHhhh------------h----------------
Confidence            5432      3543  23323333333333344444443333333211110            0                


Q ss_pred             hhhhhcCCcccccccchhhhhhhhccccccCCCCCcccccchhhhhhhhhhhhhhhHHHHHHHHHHHhhccceeEEeecc
Q 008096          267 DASICLDGKLLHTKHMKFLDKAAIVTEEDDIKSPNLWRLNTVHRVEELKSVIRMGPIWASGILLITAYAQQGTFSLQQAK  346 (577)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  346 (577)
                                    ..++....                   .+-.++++.++....+-.....|+....-+..     + 
T Consensus       252 --------------~~~f~~si-------------------~~~~~n~~F~il~~~ygi~~g~F~~l~~~l~~-----~-  292 (480)
T KOG2563|consen  252 --------------DASFPKSI-------------------KSCFKNRQFIILAICYGIGLGLFNSLSTLLNL-----A-  292 (480)
T ss_pred             --------------cCcHHHHH-------------------HHHHcCccHHHHHHHHhhhHHHHHHHHHHhhh-----c-
Confidence                          00000000                   00112222222222222222233333221110     0 


Q ss_pred             ccccccccccccccchhhhhhHHHHHHHHHhhhhhhhhccccccCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008096          347 SMDRHLTKSFQIPAGSMSVFTMVSMLSTIALYDRIIIPVARKFTGLDRGITFLHRMGIGFVISVLATLVAGFVEMKRKQA  426 (577)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ig~~~~~l~~~~~~~~~~~~~~~  426 (577)
                      .....   .-++.++.......+..++++.+.+.    +.||..+      .+..+.+......++...+....      
T Consensus       293 l~~sg---Y~~~~aG~ig~l~iv~Gmlga~~~gi----i~Dktk~------fk~~~~v~~~~~~v~~~~l~~~t------  353 (480)
T KOG2563|consen  293 LCPSG---YEGVFAGYIGALMIVAGMLGALASGI----IADKTKK------FKLTTLVLYLFALVGTLMLLTCT------  353 (480)
T ss_pred             ccccc---CCccccchhHHHHHHHHHHHHHHHHh----hhhhhhh------HHHHHHHHHHHHHHHHHHHHHhh------
Confidence            00111   11134566666666666666666555    6666421      12123333333333321111111      


Q ss_pred             HHhcCCCCCCCccccchhhHHHHHHHHHHHHHHHHhhhhhhhhhcccCcccHHHHHHHHHHHHhHHHHHHHHHHHHHhhh
Q 008096          427 ALAHGLVDKPHIIIPISVLWLVPQYSLHGIAEAFMSVGHLEFLYDQAPESMRSTATALFWTANSIGNYVSTLLVTLVHKF  506 (577)
Q Consensus       427 ~~~~~~~~~~~~~~~~~~~~l~~~~~l~gi~~~~~~~~~~~~v~~~~P~~~rg~~~gi~~~~~~lg~~l~~~i~~~v~~~  506 (577)
                       ..           .-+.+.++....+.|.+.....|..+++..|..=|..-++..|+.++.+++=+.+-..+.+...+-
T Consensus       354 -~~-----------~~~~viv~~t~~~~g~~~~~~~Pig~ElgvE~TyPv~E~tSsGll~~~gq~f~~~~~~~~~~~~~~  421 (480)
T KOG2563|consen  354 -LF-----------LGDSVIVFTTCGLLGFFGTGYLPIGFELGVETTYPVAEGTSSGLLNLSGQIFGVILVFIMGILAED  421 (480)
T ss_pred             -cc-----------CCceEehhhhHHHHHHhhcCCCCcceeeeeeeccccCCcccceeEEeehhHHHHHHHHHHHHHhhc
Confidence             11           123344455556677788888999999999987778889999998888777766666666664432


Q ss_pred             cCCCCCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhhhhhccccccccc
Q 008096          507 SAGPNGSNWLPDNNLNKGKLEYFYWLITLLQVVNVIYYFFCAKIYTFKPIQM  558 (577)
Q Consensus       507 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  558 (577)
                      .+..  +.+.+.           -+.++..+++..++..++.+.+++++.|+
T Consensus       422 ~~~~--~~~~~~-----------~i~~~~~~~l~~~lva~~r~~y~R~~~e~  460 (480)
T KOG2563|consen  422 LGPP--GNTFPA-----------NIFLTVSALLGAILVAFFRPDYRRLRAEA  460 (480)
T ss_pred             cCCC--CCCccc-----------hhHhHHHHHHHHHHHhhhhhhHHhHhhhh
Confidence            2111  011111           24556667777777888877777766654

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.34  E-value=5.4e-11  Score=130.54  Aligned_cols=201  Identities=12%  Similarity=0.210  Sum_probs=154.4

Q ss_pred             CCcceehHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhHhhhhchhhhhhhhhhccchhHHHHHHHHH
Q 008096           14 GGIITMPFIFANEVCEKLAVVGFHANMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADTYAGRFWTITVASII   93 (577)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~lg~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~   93 (577)
                      ...+.++.+++...+......+.+......+++.|+++.++.|++.+.+-++..+...+..|.+-|. -|-+.+-+|+++
T Consensus        93 ~~~k~fl~~l~~~~~~q~l~~~y~~s~IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~-HrPr~Ig~G~~~  171 (735)
T KOG3626|consen   93 ANIKMFLVLLSLAAFAQGLYVGYFNSVITTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRG-HRPRWIGIGLVL  171 (735)
T ss_pred             cCcchHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhcccc-CccceeeechhH
Confidence            3345556666666666666668889999999999999999999999999999999999999999997 788889999999


Q ss_pred             HHHHHHHHHHhhhcCCCCC------------------------------CCCCCCCc-c---cccccchhHHHHHHHHHH
Q 008096           94 YQIGMFSLTLSAILPQLRP------------------------------PPCQGDQV-C---KEADTGQLAILYASLLLA  139 (577)
Q Consensus        94 ~~i~~~~~~~~~~~~~~~~------------------------------~~~~~~~~-~---~~~~~~~~~~~~~~~~l~  139 (577)
                      ++++.+++++-    +.+.                              +.|++... |   ...+...+.+++++.++.
T Consensus       172 m~lgsll~alP----Hf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~  247 (735)
T KOG3626|consen  172 MGLGSLLFALP----HFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLL  247 (735)
T ss_pred             HHHHHHHHhCh----HHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHh
Confidence            99999988853    2111                              12222211 1   122223455788999999


Q ss_pred             HhccCCcccchhhhhhccCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhccc------------------cc-c
Q 008096          140 ALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAVLVAVTVLVYIQDN------------------VG-W  200 (577)
Q Consensus       140 g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~lg~~i~~~l~~~------------------~g-w  200 (577)
                      |+|...+++...+|+=|-...++      -..++|+.+....+|.++|.++++++...                  .| |
T Consensus       248 GIG~Tpi~tlGisYiDDnvk~~~------SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAW  321 (735)
T KOG3626|consen  248 GIGATPIFTLGISYIDDNVKKKN------SPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAW  321 (735)
T ss_pred             hcCCCCCccCCCccccccccccC------CcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHH
Confidence            99999999999999999888776      77889999999999999999888875421                  23 7


Q ss_pred             hhhhHHHHHHHHHHHHHHHHccccc
Q 008096          201 NWGLGIPTVAMFLSIIAFVFGYPLY  225 (577)
Q Consensus       201 ~~~f~~~~~~~~~~~~~~~~~~~~~  225 (577)
                      ...|++.+.+.+++.+.++++.+++
T Consensus       322 WlGFLi~g~~~~~~a~p~f~fPk~l  346 (735)
T KOG3626|consen  322 WLGFLICGALLLFSAVPLFFFPKEL  346 (735)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCcccC
Confidence            7788888877777766666655543

>TIGR00889 2A0110 nucleoside transporter

Probab=99.33  E-value=1.9e-11  Score=130.63  Aligned_cols=177  Identities=8%  Similarity=0.021  Sum_probs=135.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--------hHHHHHHHHHHhHhhhhchhhhhhhhhhccchhHHHHHHHH
Q 008096           21 FIFANEVCEKLAVVGFHANMISYLTTQLHMP--------LTKAANTLTNFGGTGSLTPLIGAFVADTYAGRFWTITVASI   92 (577)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~l~~~l~~~lg~s--------~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~   92 (577)
                      .++...++..........+++.|+++ .|.+        .++.+.+.+...+...++.++.|+++||+ |||+++.++.+
T Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~-g~r~~l~~~~~  289 (418)
T TIGR00889       212 IFFFFSMLLGAPLQITNIFGNGFLHE-FGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRF-GIKKVMLLSLV  289 (418)
T ss_pred             eHHHHHHHHHhHHHHHHHhHHHHHHH-hcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHH
Confidence            34444555444444555777888864 4443        46779999999999999999999999998 99999999999


Q ss_pred             HHHHHHHHHHHhhhcCCCCCCCCCCCCcccccccchhHHHHHHHHHHHhccCCcccchhhhhhccCCCCCchhhhhhhhh
Q 008096           93 IYQIGMFSLTLSAILPQLRPPPCQGDQVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKY  172 (577)
Q Consensus        93 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~  172 (577)
                      +..++..++....  +                +..+.+.+++.+++.|++.+...+....++.|.+|+++      |+++
T Consensus       290 ~~~v~~~l~~~~~--~----------------~~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~------~g~~  345 (418)
T TIGR00889       290 AWALRFGFFAYGD--P----------------EYFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHI------RASA  345 (418)
T ss_pred             HHHHHHHHHHHcC--c----------------chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH------HHHH
Confidence            8888776666532  0                01134567778999999999988999999999999877      9999


Q ss_pred             hhHHH-HHHHHHHHHHHHHHHhhccc------ccchhhhHHHHHHHHHHHHHHHHccc
Q 008096          173 FNWYY-FVMGAAVLVAVTVLVYIQDN------VGWNWGLGIPTVAMFLSIIAFVFGYP  223 (577)
Q Consensus       173 ~~~~~-~~~~ig~~lg~~i~~~l~~~------~gw~~~f~~~~~~~~~~~~~~~~~~~  223 (577)
                      +++.+ ....+|..+||.++|++.+.      +||+.+|.+.+++.++..+.+.+..+
T Consensus       346 ~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~  403 (418)
T TIGR00889       346 QGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFK  403 (418)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhC
Confidence            99997 56789999999999999876      46999998877766555555444443

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.33  E-value=3.1e-11  Score=128.13  Aligned_cols=170  Identities=10%  Similarity=0.013  Sum_probs=134.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCChH---HHHHHHHHHhHhhhhchhhhhhhhhhccchhHHHHHHHHHHHHHHHHH
Q 008096           25 NEVCEKLAVVGFHANMISYLTTQLHMPLT---KAANTLTNFGGTGSLTPLIGAFVADTYAGRFWTITVASIIYQIGMFSL  101 (577)
Q Consensus        25 ~~~~~~~~~~~~~~~l~~~l~~~lg~s~~---~~~~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~i~~~~~  101 (577)
                      ..++.........++++.|+.+..+....   ..+.+.+...++..++.++.|+++||+ |||+.+..+.++..++.+..
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~~~  305 (408)
T PRK09874        227 TTLIIQVATGSIAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRI-GPEKILITALIFSVLLLIPM  305 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-ccchhHHHHHHHHHHHHHHH
Confidence            34444455556667788888765443221   245566667778888899999999998 99999999888777776666


Q ss_pred             HHhhhcCCCCCCCCCCCCcccccccchhHHHHHHHHHHHhccCCcccchhhhhhccCCCCCchhhhhhhhhhhHHHHHHH
Q 008096          102 TLSAILPQLRPPPCQGDQVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMG  181 (577)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~  181 (577)
                      .+..                      +.+.+++.+++.|++.+...|...+++.+..|++.      |++.+++++...+
T Consensus       306 ~~~~----------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~~~~~~~~~  357 (408)
T PRK09874        306 SFVQ----------------------TPLQLGILRFLLGAADGALLPAVQTLLVYNSSNQI------AGRIFSYNQSFRD  357 (408)
T ss_pred             HHhc----------------------cHHHHHHHHHHHHhhhHhhHHHHHHHHHHhCCccc------ceeeehHHHHHHH
Confidence            5543                      45667788899999999999999999998888777      8999999999999


Q ss_pred             HHHHHHHHHHHhhcccccchhhhHHHHHHHHHHHHHHHHccc
Q 008096          182 AAVLVAVTVLVYIQDNVGWNWGLGIPTVAMFLSIIAFVFGYP  223 (577)
Q Consensus       182 ig~~lg~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~  223 (577)
                      +|..+||.++|++.+.+||++.|++.+++.+++.+..+...+
T Consensus       358 ~g~~~gp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~  399 (408)
T PRK09874        358 IGNVTGPLMGAAISANYGFRAVFLVTAGVVLFNAVYSWNSLR  399 (408)
T ss_pred             HHHHhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999988887777666554433

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.32  E-value=1.5e-11  Score=125.79  Aligned_cols=180  Identities=16%  Similarity=0.161  Sum_probs=146.7

Q ss_pred             ceehHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhHhhhhchhhhhhhhhhcc-chhHHH-HHHHHHH
Q 008096           17 ITMPFIFANEVCEKLAVVGFHANMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADTYA-GRFWTI-TVASIIY   94 (577)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~lg~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~-Grk~~~-~~~~~~~   94 (577)
                      |.+|++...+++..+.-|++..+.|.|++|..|+|..++++..+.|-.++..++++.||+|||++ |||... ++.++..
T Consensus       252 k~iW~la~a~vfvYivR~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~~i  331 (448)
T COG2271         252 KLIWLLALANVFVYVVRYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFMLLI  331 (448)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHHHHH
Confidence            45677777889999999999999999999999999999999999999999999999999999987 666654 3444444


Q ss_pred             HHHHHHHHHhhhcCCCCCCCCCCCCcccccccchhHHHHHHHHHHHhccCCcccchhhhhhccCCCCCchhhhhhhhhhh
Q 008096           95 QIGMFSLTLSAILPQLRPPPCQGDQVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFN  174 (577)
Q Consensus        95 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  174 (577)
                      .++.+..-+++                    +.+..+..+..+++|+..-+.+-..-....|..|.+.      -|++.|
T Consensus       332 ~~~~~~~w~~~--------------------~~~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~A------aGtA~G  385 (448)
T COG2271         332 TASLVLYWLAP--------------------NGSYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPKKA------AGTATG  385 (448)
T ss_pred             HHHHHHHHcCC--------------------CccHHHHHHHHHHHHHHHhhHHHHHHHHHhccccHhh------ccchhc
Confidence            45555444433                    2256777788888888887777666777788888776      889999


Q ss_pred             HHHHHHHH-HHHHHHHHHHhhcccccchhhhHHHHHHHHHHHHHHHHcc
Q 008096          175 WYYFVMGA-AVLVAVTVLVYIQDNVGWNWGLGIPTVAMFLSIIAFVFGY  222 (577)
Q Consensus       175 ~~~~~~~i-g~~lg~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~  222 (577)
                      +...+..+ |..++....|++.+.+||...|++..+..+++.+++....
T Consensus       386 f~Glf~Yl~Ga~~a~~~~g~i~d~~gW~g~Fi~~~~~a~l~~lll~~~~  434 (448)
T COG2271         386 FVGLFAYLIGAALAGLPLGYIADTWGWDGGFIVLSIAALLAILLLLPVW  434 (448)
T ss_pred             hhhhHHHHhhHHhcCCcceeeEecCCCcchHHHHHHHHHHHHHHHHHHH
Confidence            99999888 9999999999999999999999988888777766655544

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=99.32  E-value=4.4e-12  Score=112.43  Aligned_cols=134  Identities=14%  Similarity=0.193  Sum_probs=115.2

Q ss_pred             HHHHhHhhhhchhhhhhhhhhccchhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCcccccccchhHHHHHHHHH
Q 008096           59 LTNFGGTGSLTPLIGAFVADTYAGRFWTITVASIIYQIGMFSLTLSAILPQLRPPPCQGDQVCKEADTGQLAILYASLLL  138 (577)
Q Consensus        59 ~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  138 (577)
                      .+.+.++..++.++.|+++||+ |||+.+..+..+..++.+.+.+..                      +.+.+.+.+++
T Consensus         4 ~~~~~~~~~~~~~~~g~~~d~~-g~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~   60 (141)
T TIGR00880         4 LAGYALGQLIYSPLSGLLTDRF-GRKPVLLVGLFIFVLSTAMFALSS----------------------NITVLIIARFL   60 (141)
T ss_pred             EEeehhHHHHHHhhHHHHHhhc-chhHHHHHHHHHHHHHHHHHHHhc----------------------cHHHHHHHHHH
Confidence            3456678888999999999998 999999999988888887777654                      56778889999


Q ss_pred             HHhccCCcccchhhhhhccCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHHHHHHH
Q 008096          139 AALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAVLVAVTVLVYIQDNVGWNWGLGIPTVAMFLSIIAF  218 (577)
Q Consensus       139 ~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~lg~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~  218 (577)
                      .|++.+...+...+++.|.+|+++      |++..++.+....+|..++|.+.+++.+..+|++.+++.....++..+..
T Consensus        61 ~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (141)
T TIGR00880        61 QGFGAAFALVAGAALIADIYPPEE------RGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILL  134 (141)
T ss_pred             HHHHHHHHHHhHHHHHHHHCChhh------hhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999887      99999999999999999999999999988899999988877666655554


Q ss_pred             HHc
Q 008096          219 VFG  221 (577)
Q Consensus       219 ~~~  221 (577)
                      ...
T Consensus       135 ~~~  137 (141)
T TIGR00880       135 AFL  137 (141)
T ss_pred             hhc
Confidence            443

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.31  E-value=6.5e-11  Score=125.55  Aligned_cols=175  Identities=12%  Similarity=0.021  Sum_probs=135.5

Q ss_pred             ehHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhHhhhhchhhhhhhhhhccchhHHHHHHHHHHHHHH
Q 008096           19 MPFIFANEVCEKLAVVGFHANMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADTYAGRFWTITVASIIYQIGM   98 (577)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~lg~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~i~~   98 (577)
                      .+.+....++....+++...++|.|+++ +|+|..+++...+.+.++..++.++.|+++||+ |||+.+..+..+..++.
T Consensus       207 ~~~l~~~~~~~~~~~~~~~~~lp~~l~~-~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~-~~~~~~~~~~~l~~~~~  284 (393)
T PRK09705        207 AWTLGVYFGLINGGYASLIAWLPAFYIE-IGASAQYSGSLLALMTLGQAAGALLMPAMARHQ-DRRKLLMLALVLQLVGF  284 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhc-cchHHHHHHHHHHHHHH
Confidence            3444445556677888999999999976 899999999999999999999999999999998 99999988887777766


Q ss_pred             HHHHHhhhcCCCCCCCCCCCCcccccccchhHHHHHHHHHHHhccCCcccchhhhhhccCCC-CCchhhhhhhhhhhHHH
Q 008096           99 FSLTLSAILPQLRPPPCQGDQVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDE-TDPKQATKTWKYFNWYY  177 (577)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~-~~~~~~~~r~~~~~~~~  177 (577)
                      .++....   .                  +....  ..++.|++.+...|.......+.+++ ++      |++.+++.+
T Consensus       285 ~~~~~~~---~------------------~~~~~--~~~l~g~g~g~~~~~~~~~~~~~~~~~~~------~g~~~g~~~  335 (393)
T PRK09705        285 CGFIWLP---L------------------QLPVL--WAMVCGLGLGGAFPLCLLLALDHSVQPAI------AGKLVAFMQ  335 (393)
T ss_pred             HHHHHcc---c------------------hHHHH--HHHHHHHhccchHHHHHHHHHhhcCCHHH------HHHHHHHHH
Confidence            6554322   1                  11111  23456888888888887777887753 34      889999999


Q ss_pred             HHHHHHHHHHHHHHHhhccccc-chhhhHHHHHHHHHHHHHHHHcccc
Q 008096          178 FVMGAAVLVAVTVLVYIQDNVG-WNWGLGIPTVAMFLSIIAFVFGYPL  224 (577)
Q Consensus       178 ~~~~ig~~lg~~i~~~l~~~~g-w~~~f~~~~~~~~~~~~~~~~~~~~  224 (577)
                      ...+++..++|.+.|++.+..| |+..|++.+...++...+.....++
T Consensus       336 ~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  383 (393)
T PRK09705        336 GIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVGLMIITLRFAPA  383 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhccc
Confidence            9999999999999999999876 7888888777666665555554443

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.30  E-value=1.8e-11  Score=130.98  Aligned_cols=160  Identities=12%  Similarity=0.045  Sum_probs=128.8

Q ss_pred             HHHHHHHHHHHHHHHHhc---CCChHHHHHHHHHHhHhhhhchhhhhhhhhhccchhHHHHHHHHHHHHHHHHHHHhhhc
Q 008096           31 LAVVGFHANMISYLTTQL---HMPLTKAANTLTNFGGTGSLTPLIGAFVADTYAGRFWTITVASIIYQIGMFSLTLSAIL  107 (577)
Q Consensus        31 ~~~~~~~~~l~~~l~~~l---g~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~i~~~~~~~~~~~  107 (577)
                      ..+......++.|+.+.+   +.+..+.+++.+...+...++.++.|+++||+ |+|+.+..+.++..++.++++++.  
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~l~~~~~~l~~~~~--  313 (420)
T PRK09528        237 CFYDVFDQQFPNFFASFFATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRI-GAKNALLLAGTIMAVRIIGSGFAT--  313 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcchhhHHHHHHHHHHHHHHHhcc--
Confidence            333344445677776543   67778899999999999999999999999998 999999999988888888877654  


Q ss_pred             CCCCCCCCCCCCcccccccchhHHHHHHHHHHHhccCCcccchhhhhhccCCCCCchhhhhhhhhhhH-HHHHHHHHHHH
Q 008096          108 PQLRPPPCQGDQVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNW-YYFVMGAAVLV  186 (577)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~~ig~~l  186 (577)
                                          +.+.+++.+++.+++.+...+....++.|.+|++.      |+...+. ++...++|.++
T Consensus       314 --------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~a~~~~~~~~~~~~lg~~i  367 (420)
T PRK09528        314 --------------------GPLEVSILKLLHAFEVPFLLVGVFKYITLNFDVRL------SATIYLVGFQFAKQLGAVF  367 (420)
T ss_pred             --------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccc------eeeeeeehHHHHHHHHHHH
Confidence                                56677888999999888888888889999998766      6666655 67778999999


Q ss_pred             HHHHHHhhcccccchhhhHHHHHHHHHHHHHHH
Q 008096          187 AVTVLVYIQDNVGWNWGLGIPTVAMFLSIIAFV  219 (577)
Q Consensus       187 g~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~  219 (577)
                      +|.+.|++.+.+||+..|.+.++..++..++..
T Consensus       368 g~~~~G~l~~~~G~~~~f~~~~~~~~i~~~~~~  400 (420)
T PRK09528        368 LSTLAGNLYDSIGFQGTYLILGGIVLLFTLISV  400 (420)
T ss_pred             HHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999887776655444443

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=99.30  E-value=2.8e-13  Score=148.03  Aligned_cols=199  Identities=14%  Similarity=0.211  Sum_probs=3.0

Q ss_pred             ceehHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhHhhhhchhhhhhhhhhccchhHHHHHHHHHHHH
Q 008096           17 ITMPFIFANEVCEKLAVVGFHANMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADTYAGRFWTITVASIIYQI   96 (577)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~lg~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~i   96 (577)
                      |.++..++...+.+....+.......-++++|+++.++.|++.+.+.++..+..++..++++|. -|-|.+-.|.+++++
T Consensus         2 k~fl~~~~~~~~~q~~~~g~~~~~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~-hrprwig~g~~~~~~   80 (539)
T PF03137_consen    2 KWFLVFLCLLGLFQMMVSGYVNSSLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRG-HRPRWIGIGALLMGL   80 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             eehHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-CCcceeeecHHHHHH
Confidence            3445555555555577888888888899999999999999999999999999999999999996 788889999999999


Q ss_pred             HHHHHHHhhhcCCCCCCCCCC-------------CCcc-------------------cccccchhHHHHHHHHHHHhccC
Q 008096           97 GMFSLTLSAILPQLRPPPCQG-------------DQVC-------------------KEADTGQLAILYASLLLAALGSG  144 (577)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~-------------~~~~-------------------~~~~~~~~~~~~~~~~l~g~g~g  144 (577)
                      |.+++++    |+...++=+.             ...|                   .......+..++++.++.|+|..
T Consensus        81 g~~l~~l----Phf~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~  156 (539)
T PF03137_consen   81 GSLLFAL----PHFLSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGAT  156 (539)
T ss_dssp             ---------------------------------------------------------------------------SSS--
T ss_pred             HHHHHhc----cHhhcCCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhcccc
Confidence            9988884    4433321000             0111                   11122346788899999999999


Q ss_pred             CcccchhhhhhccCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhccc---------------------cc-chh
Q 008096          145 GIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAVLVAVTVLVYIQDN---------------------VG-WNW  202 (577)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~lg~~i~~~l~~~---------------------~g-w~~  202 (577)
                      ..++...+|+=|.+++++      -+.+.|+++....+|.++|.++++.+...                     .| |-.
T Consensus       157 pl~tLG~tYiDDnv~~~~------splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWL  230 (539)
T PF03137_consen  157 PLYTLGITYIDDNVSKKN------SPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWL  230 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCccceeeeecccccccc------CccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHH
Confidence            999999999999999877      77889999999999999998888754421                     23 666


Q ss_pred             hhHHHHHHHHHHHHHHHHcccccc
Q 008096          203 GLGIPTVAMFLSIIAFVFGYPLYR  226 (577)
Q Consensus       203 ~f~~~~~~~~~~~~~~~~~~~~~~  226 (577)
                      .|.+.+.+.++..+.+..+.++.+
T Consensus       231 Gfli~g~~~~l~aipl~~FPk~lp  254 (539)
T PF03137_consen  231 GFLICGILLFLSAIPLFFFPKKLP  254 (539)
T ss_dssp             ------------------------
T ss_pred             HHHHHHHHHHHHHHHHHcCCccCC
Confidence            777666666555555555444443

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>PRK03545 putative arabinose transporter; Provisional

Probab=99.30  E-value=9.7e-11  Score=123.95  Aligned_cols=171  Identities=8%  Similarity=-0.004  Sum_probs=134.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhHhhhhchhhhhhhhhhccchhHHHHHHHHHHHHHHHHH
Q 008096           22 IFANEVCEKLAVVGFHANMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADTYAGRFWTITVASIIYQIGMFSL  101 (577)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~l~~~l~~~lg~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~i~~~~~  101 (577)
                      .....++.....++...+++.|+.+.+|+|..+.+++.+.+.++..++.++.|+++||+ |||+.+ .+..+..++....
T Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~-~~~~~~-~~~~~~~~~~~~l  287 (390)
T PRK03545        210 LYLLTVVVVTAHFTAYSYIEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRH-PSGFLL-IAIALLLVCLLLL  287 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhcc-chhHHH-HHHHHHHHHHHHH
Confidence            34445555566666778888999888999999999999999999999999999999998 887654 4444444443333


Q ss_pred             -HHhhhcCCCCCCCCCCCCcccccccchhHHHHHHHHHHHhccCCcccchhhhhhccCCCCCchhhhhhhhhhhHHHHHH
Q 008096          102 -TLSAILPQLRPPPCQGDQVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVM  180 (577)
Q Consensus       102 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~  180 (577)
                       ....                      +.+.+++..++.|++.+...+...+.+.+..| ++      |+++.++++...
T Consensus       288 ~~~~~----------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~-~~------~~~~~g~~~~~~  338 (390)
T PRK03545        288 LPAAN----------------------SEWHLSVLSIFWGIAIMCIGLAMQVKVLKLAP-DA------TDVAMALFSGIF  338 (390)
T ss_pred             HHHhc----------------------hHHHHHHHHHHHHHHHhcchHHHHHHHHHhCC-Cc------HHHHHHHHHHHH
Confidence             2222                      45667778888899888877888888888766 35      788899999889


Q ss_pred             HHHHHHHHHHHHhhcccccchhhhHHHHHHHHHHHHHHHHccc
Q 008096          181 GAAVLVAVTVLVYIQDNVGWNWGLGIPTVAMFLSIIAFVFGYP  223 (577)
Q Consensus       181 ~ig~~lg~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~  223 (577)
                      ++|..+||.++|++.+.+|++..|++.+++.+++.+......+
T Consensus       339 ~~g~~~G~~~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  381 (390)
T PRK03545        339 NIGIGAGALLGNQVSLHLGLSSIGYVGAALALAALVWSILIFR  381 (390)
T ss_pred             HHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHcc
Confidence            9999999999999999999999999988887777766655443

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.29  E-value=5.5e-11  Score=126.33  Aligned_cols=167  Identities=10%  Similarity=-0.030  Sum_probs=130.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhHhhhhchhhhhhhhhhccchhHHHHHHHHHHHHHHHHHHH
Q 008096           24 ANEVCEKLAVVGFHANMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADTYAGRFWTITVASIIYQIGMFSLTL  103 (577)
Q Consensus        24 ~~~~~~~~~~~~~~~~l~~~l~~~lg~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~i~~~~~~~  103 (577)
                      ...++.....+....++|.|+++ .|++..+.+.+.+.+.++..++.++.|+++||+ |||+.+..+.+...++.....+
T Consensus       227 ~~~~~~~~~~~~~~~~~p~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~~~~~  304 (406)
T PRK11551        227 ISYFFTLIVLYFLLNWLPSLLVG-QGLSRSQAGLVQIAFNIGGALGSLLIGALMDRL-RPRRVVLLIYAGILASLAALAA  304 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHh-CCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHh
Confidence            34445556667778888999875 799999999999999999999999999999998 9999988876666665555544


Q ss_pred             hhhcCCCCCCCCCCCCcccccccchhHHHHHHHHHHHhccCCcccchhhhhhccCCCCCchhhhhhhhhhhHHHHHHHHH
Q 008096          104 SAILPQLRPPPCQGDQVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAA  183 (577)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig  183 (577)
                      ..                      +.+.+.+..++.|++.++..+...++..|.+|+++      |++..++.+....+|
T Consensus       305 ~~----------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~~~~~~g  356 (406)
T PRK11551        305 AP----------------------SFAGMLLAGFAAGLFVVGGQSVLYALAPLFYPTQV------RGTGVGAAVAVGRLG  356 (406)
T ss_pred             cC----------------------cHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcchhh------hhhhhhHHHHhhhHH
Confidence            32                      34455666777888888888899999999999888      999999999999999


Q ss_pred             HHHHHHHHHhhcccc-cchhhhHHHHHHHHHHHHHHHH
Q 008096          184 VLVAVTVLVYIQDNV-GWNWGLGIPTVAMFLSIIAFVF  220 (577)
Q Consensus       184 ~~lg~~i~~~l~~~~-gw~~~f~~~~~~~~~~~~~~~~  220 (577)
                      ..++|.+.|++.+.. +|...++......+++.++.+.
T Consensus       357 ~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  394 (406)
T PRK11551        357 SMAGPLLAGQLLALGRSTVGVIGASIPVILVAALAALL  394 (406)
T ss_pred             HHHHhhhHhhhhccCCchHHHHHHHHHHHHHHHHHHHH
Confidence            999999999998764 3555555555555554444443

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.29  E-value=2.3e-11  Score=128.54  Aligned_cols=158  Identities=13%  Similarity=0.111  Sum_probs=125.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhHhhhhchhhhhhhhhhccchhHHHHHHHHHHHHHHHH
Q 008096           21 FIFANEVCEKLAVVGFHANMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADTYAGRFWTITVASIIYQIGMFS  100 (577)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~l~~~l~~~lg~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~i~~~~  100 (577)
                      .+.....+.....+....++|.|+.+++|++..+.+++.+...++..++.++.|+++||+ |||+.+.++.++..+....
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~~  320 (405)
T TIGR00891       242 YLVVLVLFANLYSHPIQDLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWL-GRRKAYVCSLLAGQLLIIP  320 (405)
T ss_pred             HHHHHHHHHHHHHhhhhhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchhhhHHHHHHHHHHHHH
Confidence            333444445555667778899999999999999999999999999999999999999998 9999988887655332222


Q ss_pred             HHHhhhcCCCCCCCCCCCCcccccccchhHHHHHHHHHHHhccCCcccchhhhhhccCCCCCchhhhhhhhhhhHHHHHH
Q 008096          101 LTLSAILPQLRPPPCQGDQVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVM  180 (577)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~  180 (577)
                      .....                     .+.+.+.+..++.++..+...+..++++.|.+|+++      |++++++.+...
T Consensus       321 ~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~g~~~~~~  373 (405)
T TIGR00891       321 VFAIG---------------------ANVAVLGLGLFFQQMLVQGIWGILPKHLGEYFPTDQ------RAAGLGFTYQLG  373 (405)
T ss_pred             HHHhC---------------------CchHHHHHHHHHHHHHHccchhhHHHHHhhhCCcch------hHHHhhHHHHHH
Confidence            11111                     144556666677777777778888899999999888      999999999999


Q ss_pred             HHHHHHHHHHHHhhccccc-chhhhHH
Q 008096          181 GAAVLVAVTVLVYIQDNVG-WNWGLGI  206 (577)
Q Consensus       181 ~ig~~lg~~i~~~l~~~~g-w~~~f~~  206 (577)
                      ++|..++|.+.|++.+..| |+..+..
T Consensus       374 ~~g~~~g~~~~g~l~~~~g~~~~~~~~  400 (405)
T TIGR00891       374 NLGGALAPIIGALLAQRLDEYGTALAS  400 (405)
T ss_pred             HHHHHHHHHHHHHHHHhccccchhHHh
Confidence            9999999999999999888 7765544

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.29  E-value=6.4e-11  Score=129.36  Aligned_cols=150  Identities=17%  Similarity=0.138  Sum_probs=117.8

Q ss_pred             HHHHHHHHHHHHHhcCCChHHHHHHHHHHhHhhhhchhhhhhhhhhccchhHHHHHHHHHHHHHHHHHHHhhhcCCCCCC
Q 008096           34 VGFHANMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADTYAGRFWTITVASIIYQIGMFSLTLSAILPQLRPP  113 (577)
Q Consensus        34 ~~~~~~l~~~l~~~lg~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  113 (577)
                      +....++|.|+++++|++..+.+++.+...++..++.++.|+++||+ |||+.+.++.++..++.++.....        
T Consensus       292 ~~~~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~~~~~~~--------  362 (496)
T PRK03893        292 WPIQALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWL-GTRKAYVCSLLISQLLIIPVFAIG--------  362 (496)
T ss_pred             chHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHHhhcc--------
Confidence            34678899999989999999999999999999999999999999998 999998887766555544333221        


Q ss_pred             CCCCCCcccccccchhHHHHHHHHHHHhccCCcccchhhhhhccCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHHHHHh
Q 008096          114 PCQGDQVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAVLVAVTVLVY  193 (577)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~lg~~i~~~  193 (577)
                                  ..+.+.+.+..++.+....+..+..++++.|.+|+++      |++.+++++...++|..+||.+.|+
T Consensus       363 ------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~~~~~~~~~~~g~~lgp~l~g~  424 (496)
T PRK03893        363 ------------GANVWVLGLLLFFQQMLGQGISGLLPKLIGGYFDTEQ------RAAGLGFTYNVGALGGALAPILGAL  424 (496)
T ss_pred             ------------ccHHHHHHHHHHHHHHHhcccchhhHHHHHhhCCHHH------hhcccchhhhhhhHHHHHHHHHHHH
Confidence                        1133334444444443333445677888999999877      9999999999999999999999999


Q ss_pred             hcccccchhhhHHHHHH
Q 008096          194 IQDNVGWNWGLGIPTVA  210 (577)
Q Consensus       194 l~~~~gw~~~f~~~~~~  210 (577)
                      +.+.+||+..+.+.+..
T Consensus       425 l~~~~g~~~~~~~~~~~  441 (496)
T PRK03893        425 IAQRLDLGTALASLSFS  441 (496)
T ss_pred             HhccCChHHHHHHHHHH
Confidence            99999999887655443

>PRK12382 putative transporter; Provisional

Probab=99.28  E-value=3.7e-11  Score=127.17  Aligned_cols=161  Identities=17%  Similarity=0.173  Sum_probs=131.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhHhhhhchhhhhhhhhhccchhHHHHHHHHHHHHHHHHHHHhhhc
Q 008096           28 CEKLAVVGFHANMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADTYAGRFWTITVASIIYQIGMFSLTLSAIL  107 (577)
Q Consensus        28 ~~~~~~~~~~~~l~~~l~~~lg~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~i~~~~~~~~~~~  107 (577)
                      +.......+..+.+.|+++ .|++.  .+.....+.++..+++++.|++.||+ |+|+.+..+..+..++.++..+..  
T Consensus       227 l~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~~~~~~~~~~~~~~~~~--  300 (392)
T PRK12382        227 LQGVGFAVIGTFVSLYFAS-KGWAM--AGFTLTAFGGAFVLMRVLFGWMPDRF-GGVKVAIVSLLVETVGLLLLWLAP--  300 (392)
T ss_pred             HHHHHHhHHHHHHHHHHHh-cCCch--hHHHHHHHHHHHHHHHHHHHHHHHhc-CCCeehHHHHHHHHHHHHHHHHcc--
Confidence            3445556667778888864 56654  45666777888889999999999998 999999998888888877766543  


Q ss_pred             CCCCCCCCCCCCcccccccchhHHHHHHHHHHHhccCCcccchhhhhhccCCCCCchhhhhhhhhhhHHHHHHHHHHHHH
Q 008096          108 PQLRPPPCQGDQVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAVLVA  187 (577)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~lg  187 (577)
                                          +.+.+++..++.|++.+...|...+...|.+|+++      |+++.++++....+|..++
T Consensus       301 --------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~g~~~~~~~~g~~ig  354 (392)
T PRK12382        301 --------------------TAWVALAGAALTGAGCSLIFPALGVEVVKRVPSQV------RGTALGGYAAFQDIAYGVS  354 (392)
T ss_pred             --------------------cHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCHHH------HHHHHHHHHHHHHHHHHHH
Confidence                                45566778889999999888888888999998777      9999999999999999999


Q ss_pred             HHHHHhhcccccchhhhHHHHHHHHHHHHHHHH
Q 008096          188 VTVLVYIQDNVGWNWGLGIPTVAMFLSIIAFVF  220 (577)
Q Consensus       188 ~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~  220 (577)
                      |.+.|++.+..||+..|.+.+...+++.+....
T Consensus       355 ~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~  387 (392)
T PRK12382        355 GPLAGMLATSFGYPSVFLAGAISAVLGIIVTIL  387 (392)
T ss_pred             HHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999988877776665544

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.28  E-value=6.4e-11  Score=124.00  Aligned_cols=177  Identities=13%  Similarity=0.031  Sum_probs=129.8

Q ss_pred             ceehHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhHhhhhchhhhhhhhhhccchhHH-HHHHHHHHH
Q 008096           17 ITMPFIFANEVCEKLAVVGFHANMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADTYAGRFWT-ITVASIIYQ   95 (577)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~lg~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grk~~-~~~~~~~~~   95 (577)
                      +..+......++.....+.+..++|.|+++.+|.|..+.+++.+...++..++.++.|+++||+ |||+. +........
T Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~  293 (399)
T TIGR00893       215 RRVWGLALGQFLVNIGLGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLL-LRRGKSLVFARKTAI  293 (399)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHH-hhcccchhHHHHHHH
Confidence            3445556677777888888899999999999999999999999999999999999999999998 88861 111111111


Q ss_pred             HHH---HHHHHhhhcCCCCCCCCCCCCcccccccchhHHHHHHHHHHHhccCCcccchhhhhhccCCCCCchhhhhhhhh
Q 008096           96 IGM---FSLTLSAILPQLRPPPCQGDQVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKY  172 (577)
Q Consensus        96 i~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~  172 (577)
                      ++.   ....+..+.                  ..+.+.......+.+.+.+ ..+...++.+|.+|+++      |+++
T Consensus       294 ~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~------~g~~  348 (399)
T TIGR00893       294 IAGLVLSLLMFATNY------------------VNIPYAALALVALGFFGLG-AGAIGWALISDNAPGNI------AGLT  348 (399)
T ss_pred             HHHHHHHHHHHHhcc------------------chhHHHHHHHHHHHHhchh-hhhHHHHHHHhhcChhH------HHHH
Confidence            111   111111100                  0123333333444444444 78999999999999888      9999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHhhccccc-chhhhHHHHHHHHHHHHHHH
Q 008096          173 FNWYYFVMGAAVLVAVTVLVYIQDNVG-WNWGLGIPTVAMFLSIIAFV  219 (577)
Q Consensus       173 ~~~~~~~~~ig~~lg~~i~~~l~~~~g-w~~~f~~~~~~~~~~~~~~~  219 (577)
                      .++.+...++|..++|.+.|++.+..| |+..|++.++..+++.+..+
T Consensus       349 ~~~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~  396 (399)
T TIGR00893       349 GGLINSLGNLGGIVGPIVIGAIAATTGSFAGALMVVAALALIGALSYL  396 (399)
T ss_pred             HHHHHHHHHHhhhhhhHHhhhhccCCCchhHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999888 99999888777666555443

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.27  E-value=1.4e-10  Score=122.42  Aligned_cols=158  Identities=13%  Similarity=0.162  Sum_probs=124.3

Q ss_pred             HHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhHhhhhchhhhhhhhhhccchhHHHHHHHHHHHHHHHHHHHhhhcCC
Q 008096           30 KLAVVGFHANMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADTYAGRFWTITVASIIYQIGMFSLTLSAILPQ  109 (577)
Q Consensus        30 ~~~~~~~~~~l~~~l~~~lg~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~  109 (577)
                      ...+.....++|.|+++ .|.+.++.+++.+...++..+++++.|+++||+ |+|+.+..+.++..++.+...  .    
T Consensus       213 ~~~~~~~~~~lp~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-~~~~~l~~~~~~~~~~~~~~~--~----  284 (381)
T PRK03633        213 GIVLGSLYGLMPLYLNH-QGMSDASIGFWMALLVSAGILGQWPIGRLADRF-GRLLVLRVQVFVVILGSIAML--S----  284 (381)
T ss_pred             HHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHc-CcHHHHHHHHHHHHHHHHHHh--h----
Confidence            33444555678888875 699999999999999999999999999999998 999999888877776654432  1    


Q ss_pred             CCCCCCCCCCcccccccchhHHHHHHHHHHHhccCCcccchhhhhhccCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHH
Q 008096          110 LRPPPCQGDQVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAVLVAVT  189 (577)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~lg~~  189 (577)
                                         .......+++.|++.+...|...+.+.|..|+++      ++...+.++...++|..+||.
T Consensus       285 -------------------~~~~~~~~~l~g~~~~~~~p~~~~~~~~~~~~~~------~~~~~~~~~~~~~lG~~igp~  339 (381)
T PRK03633        285 -------------------QAAMAPALFILGAAGFTLYPVAMAWACEKVEHHE------LVAMNQALLLSYTVGSLLGPS  339 (381)
T ss_pred             -------------------hHHHHHHHHHHHHHHHhHHHHHHHHHHccCCHHH------HHHHHHHHHHHHHHHHHHHHH
Confidence                               1123345667777777788999999999888765      667778888888999999999


Q ss_pred             HHHhhcccccchhhhHHHHHHHHHHHHHHHH
Q 008096          190 VLVYIQDNVGWNWGLGIPTVAMFLSIIAFVF  220 (577)
Q Consensus       190 i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~  220 (577)
                      ++|++.++.||++.|.+.+.+.++..+..+.
T Consensus       340 ~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~  370 (381)
T PRK03633        340 FTAMLMQNYSDNLLFIMIASVSFIYLLMLLR  370 (381)
T ss_pred             HHHHHHHHhCccHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999998877776655544443

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=99.25  E-value=3.1e-09  Score=113.67  Aligned_cols=366  Identities=11%  Similarity=0.051  Sum_probs=213.9

Q ss_pred             ceehHHHHHHHHHHHHHHHHH---HHHHHHHHHhcCCCh-HHHHHHHHHH----hHhhhhchhhhhhhhhhccchhHHHH
Q 008096           17 ITMPFIFANEVCEKLAVVGFH---ANMISYLTTQLHMPL-TKAANTLTNF----GGTGSLTPLIGAFVADTYAGRFWTIT   88 (577)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~---~~l~~~l~~~lg~s~-~~~~~i~~~~----~~~~~~~~~~~G~laDr~~Grk~~~~   88 (577)
                      .....+....+...++.+...   .....+.....+.+. ...+......    .+...+.++..|.++||| |||..+.
T Consensus        18 ~~~~~~~~~~fl~~fa~~l~~~~~~~~~~~~~ct~~~~~~~~~~~~~~~~~~~~~~~~~i~s~~iG~lSD~~-grk~~L~   96 (463)
T KOG2816|consen   18 ASMRHLEPLLFLYMFSWGLSSTVMTNVILYLACTFGDDYQLENGLLLGVKQVTAGLLTLISSPLIGALSDRY-GRKVVLL   96 (463)
T ss_pred             chhhHHHHHHHHHHHHHHhcCcchhhhhhhhhcccccCccchhhhhhhHHHHhhHHHHHHHHhhhHHhhhhh-hhhhhHH
Confidence            344455556666666655555   444555555444322 1222333333    577788899999999999 9999999


Q ss_pred             HHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCcccccccchhHHHHHHHHHHHhccCCcccchhhhhhccCCCCCchhhhh
Q 008096           89 VASIIYQIGMFSLTLSAILPQLRPPPCQGDQVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATK  168 (577)
Q Consensus        89 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~  168 (577)
                      ..+....+..+...+..                       +|.+.  ..-..-+.+...+...++++|....++      
T Consensus        97 ~~~~~~~l~~~~~~~~~-----------------------~~~~~--~~~l~g~~~~~~s~~~a~vadis~~~~------  145 (463)
T KOG2816|consen   97 LPLFGTILPALCLLFQG-----------------------YWFFL--LLGLSGGFSAIFSVGFAYVADISSEEE------  145 (463)
T ss_pred             HHHHHHHHhHHHHHHHH-----------------------HHHhh--hcccccchhhhhhhhhhheeeccchhH------
Confidence            99988888877777643                       23222  111233445566777888999988887      


Q ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHHHHHHHHHccccccccCCCC-ChhhHHHHHHHHHHh
Q 008096          169 TWKYFNWYYFVMGAAVLVAVTVLVYIQDNVGWNWGLGIPTVAMFLSIIAFVFGYPLYRNLNPAG-SPFVRLMQVCVAAFR  247 (577)
Q Consensus       169 r~~~~~~~~~~~~ig~~lg~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  247 (577)
                      |...+++.+.....+..++|.+++.+.+..|.-..|.++.+..+++.+......|+...++... .+.++          
T Consensus       146 R~~~~gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~~~~~~~~~----------  215 (463)
T KOG2816|consen  146 RSSSIGLLSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPESLQEKERSDATLRE----------  215 (463)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhccccccCccccccccccc----------
Confidence            9999999999999999999999999999999999999999888887777666665533322211 00000          


Q ss_pred             hccccCCCCCcccccccchhhhhhcCCcccccccchhhhhhhhccccccCCCCCcccccchhhhhhhhhhhhhhhHHHHH
Q 008096          248 KRNLDMVSDPNVLYQNEELDASICLDGKLLHTKHMKFLDKAAIVTEEDDIKSPNLWRLNTVHRVEELKSVIRMGPIWASG  327 (577)
Q Consensus       248 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~l~~~~  327 (577)
                          ..+.+.                   .+.                  ...+++...+.  ...+|..+.   +....
T Consensus       216 ----~~~~~~-------------------~~~------------------~~~~~~~~~~~--~~~~r~~l~---l~l~~  249 (463)
T KOG2816|consen  216 ----LTPGSL-------------------DSS------------------HVADAFQSLTK--VGPDRLLLL---LLLVA  249 (463)
T ss_pred             ----cCCCcc-------------------cch------------------hhhhhhhhhcc--cCCCccchH---HHHHH
Confidence                000000                   000                  00011110000  111121111   11111


Q ss_pred             HHHHHHhhccceeEEeecccccccccccccc-ccchhhhhhHHHHHHHHHhhhhhhhhccccccCCCCCCCchhHHHHHH
Q 008096          328 ILLITAYAQQGTFSLQQAKSMDRHLTKSFQI-PAGSMSVFTMVSMLSTIALYDRIIIPVARKFTGLDRGITFLHRMGIGF  406 (577)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ig~  406 (577)
                      ...............  ..+.+..+  +++. ..+.+.........+...+.-   ..+.+..+.++.       +.+|+
T Consensus       250 ~~~~~~~~~~~~~~~--~~yl~~~f--~w~~~~~s~~~~~~~~~~~i~~l~~~---~~l~~~l~~~~~-------i~lGl  315 (463)
T KOG2816|consen  250 FLSSLPEAGGASDVL--LLYLKAKF--GWNKKEFSDLLSLVSILGIISQLLLL---PLLSSILGEKRL-------ISLGL  315 (463)
T ss_pred             HHHHHHHhcCceeEE--EEEEeeec--CcCHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhhhhH-------hhHHH
Confidence            122222211111001  11112222  2221 122233333332222222211   013333333322       78899


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccccchhhHHHHHHHHHHHHHHHHhhhhhhhhhcccCcccHHHHHHHHH
Q 008096          407 VISVLATLVAGFVEMKRKQAALAHGLVDKPHIIIPISVLWLVPQYSLHGIAEAFMSVGHLEFLYDQAPESMRSTATALFW  486 (577)
Q Consensus       407 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~gi~~~~~~~~~~~~v~~~~P~~~rg~~~gi~~  486 (577)
                      ..-.+..+..++.+                      +.|..+.. ........+..|..-+++...+.++.+|..+++..
T Consensus       316 ~~~~~~~~~~af~~----------------------~~w~~~~~-~v~~~~~~~~~pa~~s~~s~~v~~~e~g~v~~~is  372 (463)
T KOG2816|consen  316 LSEFLQLLLFAFAT----------------------ETWMMFAA-GVVVALAGIVFPAIRAFASILVSPEEQGKVFGIIS  372 (463)
T ss_pred             HHHHHHHHHHHHhc----------------------cchhhhHH-HHHHHhhcchhHHHHhHHHhhcccccccchhhHHH
Confidence            88888888888876                      44444444 33344457888888999999999999999999999


Q ss_pred             HHHhHHHHHHHHHHHHHhhhc
Q 008096          487 TANSIGNYVSTLLVTLVHKFS  507 (577)
Q Consensus       487 ~~~~lg~~l~~~i~~~v~~~~  507 (577)
                      ....+.+.+++.+.+.+...+
T Consensus       373 ~i~~l~~~~~~~~~~~i~~~t  393 (463)
T KOG2816|consen  373 GIEGLSGVVSPALYGNIFALT  393 (463)
T ss_pred             HHHHHhhhhhHHHHHHHHHHH
Confidence            999999999999999887665

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.25  E-value=7.1e-11  Score=126.13  Aligned_cols=162  Identities=6%  Similarity=-0.087  Sum_probs=132.7

Q ss_pred             HHHHHHHHHHHHHHhcCCChHHHHHHHHHHhHhhhhchhhhhhhhhhccchhHHHHHHHHHHHHHHHHHHHhhhcCCCCC
Q 008096           33 VVGFHANMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADTYAGRFWTITVASIIYQIGMFSLTLSAILPQLRP  112 (577)
Q Consensus        33 ~~~~~~~l~~~l~~~lg~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~~~~  112 (577)
                      .++...++|.|+++.+|.+..+.+++.+...++..++.++.|++.||. ++++.+..+.++..++.+++.+..       
T Consensus       239 ~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~-~~~~~l~~~~~~~~~~~~~~~~~~-------  310 (417)
T PRK10489        239 ASAVRVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSA-RPGLLMLLSTLGSFLAVGLFGLMP-------  310 (417)
T ss_pred             HHhHHHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhcc-CcchHHHHHHHHHHHHHHHHHccc-------
Confidence            456677889999988999999999999999999999999999999997 888888888877777766665533       


Q ss_pred             CCCCCCCcccccccchhHHHHHHHHHHHhccCCcccchhhhhhccCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 008096          113 PPCQGDQVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAVLVAVTVLV  192 (577)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~lg~~i~~  192 (577)
                                     +.+...+..++.|++.+...+...+++.|.+|++.      |++++++++...++|..+||.+.|
T Consensus       311 ---------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~~~~~~g~~~g~~l~G  369 (417)
T PRK10489        311 ---------------MWILAVLCLALFGYLSAISSLLQYTLLQTQTPDEM------LGRINGLWTAQNVTGDAIGAALLG  369 (417)
T ss_pred             ---------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHH------HHHHHHHHHHHHhhhHhHHHHHHH
Confidence                           55666777888888888877888889999999777      999999999999999999999999


Q ss_pred             hhcccccchhhhHHHHHHHHHHHHHHHHccc
Q 008096          193 YIQDNVGWNWGLGIPTVAMFLSIIAFVFGYP  223 (577)
Q Consensus       193 ~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~  223 (577)
                      ++.+.+|++..++..+...++..++.....+
T Consensus       370 ~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  400 (417)
T PRK10489        370 GLGAMMTPVASASASGFGLLIIGVLLLLVLG  400 (417)
T ss_pred             HHHHHhchhhHHHHHHHHHHHHHHHHHHhcc
Confidence            9999989888887766655444444333333

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.25  E-value=1.6e-10  Score=122.09  Aligned_cols=169  Identities=8%  Similarity=-0.042  Sum_probs=142.4

Q ss_pred             ceehHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhHhhhhchhhhhhhhhhccchhHHHHHHHHHHHH
Q 008096           17 ITMPFIFANEVCEKLAVVGFHANMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADTYAGRFWTITVASIIYQI   96 (577)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~lg~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~i   96 (577)
                      |..+......++.........++.+.|+++ +|.|..+.+.+.+...++..+..++.|++.||+ |.|+.+.++.+...+
T Consensus       205 ~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~-~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~-g~~~~l~~~~~~~~~  282 (382)
T TIGR00902       205 PMNLRFLAAVCLIQGAHAAYYGFSAIYWQA-AGISASATGLLWGIGVLAEIIIFAFSNKLFQNC-SARDLLLISAIACVG  282 (382)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhC-CHHHHHHHHHHHHHH
Confidence            334555556666777778888899999965 899999999999999999999999999999998 999999999999999


Q ss_pred             HHHHHHHhhhcCCCCCCCCCCCCcccccccchhHHHHHHHHHHHhccCCcccchhhhhhccCCCCCchhhhhhhhhhhHH
Q 008096           97 GMFSLTLSAILPQLRPPPCQGDQVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWY  176 (577)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  176 (577)
                      ...+++++.                      +.+.+++..++.|+..+...+....++.+. |+++      |+++.+++
T Consensus       283 ~~~~~~~~~----------------------~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~------~~~~q~~~  333 (382)
T TIGR00902       283 RWAIIGAIE----------------------AFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSE------IAKLQALY  333 (382)
T ss_pred             HHHHHHhHh----------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhh------HHHHHHHH
Confidence            988888765                      678888899999999999999999999987 7666      78888887


Q ss_pred             H-HHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHHHHHH
Q 008096          177 Y-FVMGAAVLVAVTVLVYIQDNVGWNWGLGIPTVAMFLSIIA  217 (577)
Q Consensus       177 ~-~~~~ig~~lg~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~  217 (577)
                      + ....+|..+|+.++|++.+.+|+ ..|.+.+...+++.++
T Consensus       334 ~~~~~g~g~~~g~~~~G~l~~~~g~-~~~~~~~~~~~~~~~~  374 (382)
T TIGR00902       334 NALAMGGLIAIFTAFAGFIYPTLGA-GTFVFMAIIAAAAFFL  374 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHHH
Confidence            6 45689999999999999999886 5566666665555443

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.24  E-value=1.3e-10  Score=124.90  Aligned_cols=177  Identities=11%  Similarity=-0.009  Sum_probs=120.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhHhhhhchhhhhhhhhhcc--chhHHHHHHHHHHHHH
Q 008096           20 PFIFANEVCEKLAVVGFHANMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADTYA--GRFWTITVASIIYQIG   97 (577)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~lg~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~--Grk~~~~~~~~~~~i~   97 (577)
                      +.+....++.....+++..++|.|+.+++|+|..+++...+.+.++..++.++.|+++||+.  +|+.......+...+.
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~~~~  325 (434)
T PRK11663        246 WLLSFSYVLVYVVRAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGILLS  325 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHHHHH
Confidence            33344455555666677889999999899999999999999999999999999999999972  2333322222111222


Q ss_pred             HHHHHHhhhcCCCCCCCCCCCCcccccccchhHHHHHHHHHHHhccCCcccchhhhhhccCCCCCchhhhhhhhhhhHHH
Q 008096           98 MFSLTLSAILPQLRPPPCQGDQVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYY  177 (577)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~  177 (577)
                      ........   .                 .+.....+..++.|++..........+.+|.+|+++      |+++.++.+
T Consensus       326 ~~~~~~~~---~-----------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~g~~~  379 (434)
T PRK11663        326 VGSLWLMP---F-----------------ASYVMQAACFFTIGFFVFGPQMLIGMAAAECSHKEA------AGAATGFVG  379 (434)
T ss_pred             HHHHHHcc---c-----------------ccHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccHhh------HHhHHHHHH
Confidence            11111111   0                 022223333334444332222233456688888777      999999999


Q ss_pred             HHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHHHHHHHHHcc
Q 008096          178 FVMGAAVLVAVTVLVYIQDNVGWNWGLGIPTVAMFLSIIAFVFGY  222 (577)
Q Consensus       178 ~~~~ig~~lg~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~  222 (577)
                      ...++|..++|.+.|++.+..||+..|++.+++.+++.+....+.
T Consensus       380 ~~~~~g~~~~p~~~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~  424 (434)
T PRK11663        380 LFAYLGAALSGYPLAKVLEIWHWTGFFVVISIAAGISALLLLPFL  424 (434)
T ss_pred             HHHHHHHHHhcccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999888887766655554443

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=99.24  E-value=3.6e-09  Score=113.41  Aligned_cols=162  Identities=15%  Similarity=0.107  Sum_probs=121.4

Q ss_pred             HHHHHHHHhcCCChHHHHHHHHHHhHhhhhchhhhhhhhhhc--cc--hhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCC
Q 008096           39 NMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADTY--AG--RFWTITVASIIYQIGMFSLTLSAILPQLRPPP  114 (577)
Q Consensus        39 ~l~~~l~~~lg~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~--~G--rk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  114 (577)
                      -...|+++++|+|+++...+.+...+--.+- ++.|.++|.+  +|  ||+-++++.++..++.+.++.....       
T Consensus        11 ~~~~~l~~~l~ls~~~~~~~~~~~~lPw~~K-p~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~-------   82 (433)
T PF03092_consen   11 AIYPFLKDDLGLSPAQLQRLSSLASLPWSIK-PLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPAS-------   82 (433)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHhCchHHh-hhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccc-------
Confidence            3456789999999999999888877766665 7789999996  23  5555666777766666666654311       


Q ss_pred             CCCCCcccccccchhHHHHHHHHHHHhccCCcccchhhhhhccCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHHHHHhh
Q 008096          115 CQGDQVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAVLVAVTVLVYI  194 (577)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~lg~~i~~~l  194 (577)
                                 ..+.....+..++..+|....-..+.++..|....+.. .   |+...+..+....+|.+++..+.|.+
T Consensus        83 -----------~~s~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~-~---~g~lqS~~~~~~~~G~lv~~~l~G~l  147 (433)
T PF03092_consen   83 -----------ESSAAIAVVLLFLASFGYAFADVAADALVVELARREPE-S---RGDLQSFVWGVRSVGSLVGSLLSGPL  147 (433)
T ss_pred             -----------cchhhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCc-h---hHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence                       12445556677778899999999999999998865431 1   67888888889999999999999999


Q ss_pred             cccccchhhhHHHHHHHHHHHHHHHHccc
Q 008096          195 QDNVGWNWGLGIPTVAMFLSIIAFVFGYP  223 (577)
Q Consensus       195 ~~~~gw~~~f~~~~~~~~~~~~~~~~~~~  223 (577)
                      .+..+++..|.+.+++.++..+...+..+
T Consensus       148 ~~~~~~~~~f~i~~~~~~l~~~~~~~~~~  176 (433)
T PF03092_consen  148 LDSFGPQGVFLISAALPLLMLIVALFLLE  176 (433)
T ss_pred             hhcCCCeEEehHHHHHHHHHHHHHHHhhh
Confidence            99999999998888776666555444444

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>TIGR00897 2A0118 polyol permease family

Probab=99.22  E-value=2.8e-10  Score=121.00  Aligned_cols=175  Identities=13%  Similarity=0.061  Sum_probs=129.6

Q ss_pred             ehHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhHhhhhchhhhhhhhhhccchhHHHH-HHHHHHHHH
Q 008096           19 MPFIFANEVCEKLAVVGFHANMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADTYAGRFWTIT-VASIIYQIG   97 (577)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~lg~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~-~~~~~~~i~   97 (577)
                      ++......++....++++..++|.|++ ++|++..+.+++.+...++..++.++.|+++||+ |||+.+. .+.+...++
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~-~~~~~~~~~~~l~~~~~  301 (402)
T TIGR00897       224 VLLGGMVRIINTIGLFGFAVFLPMFVA-ELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKL-GWMNTVRWFGGVGCGIF  301 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhh-cchhHHHHHHHHHHHHH
Confidence            344455667777888999999999985 5899999999999999999999999999999998 9888764 333333333


Q ss_pred             HHHHHHhhhcCCCCCCCCCCCCcccccccchhHHHHHHHHHHHhccCCcccchhhhhhccCCCCCchhhhhhhhhhhHHH
Q 008096           98 MFSLTLSAILPQLRPPPCQGDQVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYY  177 (577)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~  177 (577)
                      ...+.+.....                 ..+.+..++..++.|++.+...+ ..+...|..| ++      |++++++++
T Consensus       302 ~~~l~~~~~~~-----------------~~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~~~~-~~------~g~~~g~~~  356 (402)
T TIGR00897       302 TLALYYIPQHF-----------------GHSFAVALIIAIALGIFLAGYVP-LAAVFPTLAP-KH------KGAAMSVLN  356 (402)
T ss_pred             HHHHHHHHHcc-----------------CCcHHHHHHHHHHHHHHHHHHHH-HHHHHHhhCc-ch------hHHHHHHHH
Confidence            33333221000                 11455566677778887776654 3455666544 45      899999999


Q ss_pred             HHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHHHHHHHHH
Q 008096          178 FVMGAAVLVAVTVLVYIQDNVGWNWGLGIPTVAMFLSIIAFVF  220 (577)
Q Consensus       178 ~~~~ig~~lg~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~  220 (577)
                      ...++|..++|.+.+.+.+.+||...+++.+++.+++.+...+
T Consensus       357 ~~~~lg~~~gp~i~g~l~~~~g~~~~~~~~a~~~~i~~~~~~~  399 (402)
T TIGR00897       357 LSAGLSAFLAPAIAVLFIGFFGAIGVVWIFAALYVVSAFLTAF  399 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999998888777665555443

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=99.22  E-value=2.4e-10  Score=123.33  Aligned_cols=187  Identities=15%  Similarity=0.122  Sum_probs=152.7

Q ss_pred             CcceehHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhHhhhhchhhhhhhhhhccchh--HHHHHHHH
Q 008096           15 GIITMPFIFANEVCEKLAVVGFHANMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADTYAGRF--WTITVASI   92 (577)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~lg~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grk--~~~~~~~~   92 (577)
                      +.|.+...++..++.+-+...+......|.++++|+|..+...+....++.+.++.++.|++.||+ |.|  +++.++++
T Consensus       279 ~~~~~~~fLia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~-g~k~~~~l~~~l~  357 (477)
T PF11700_consen  279 KLRQLFLFLIAYFLYSDGVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRF-GPKTKRTLLISLI  357 (477)
T ss_pred             hChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCchhHHHHHHHH
Confidence            446777777788888899999999999999999999999999999999999999999999999998 988  88888777


Q ss_pred             HHHHHHHHHHHhhhcCCCCCCCCCCCCcccccccchhHHHHHHHHHHHhccCCcccchhhhhhccCCCCCchhhhhhhhh
Q 008096           93 IYQIGMFSLTLSAILPQLRPPPCQGDQVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKY  172 (577)
Q Consensus        93 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~  172 (577)
                      ++.+..+.-.+.. .+..             ....+.+.+++.-++.|+..|..++..-++.+|+.|+++      .+..
T Consensus       358 ~~~~i~~~g~~G~-~~~~-------------~g~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~------e~ef  417 (477)
T PF11700_consen  358 LWIIIPLYGLFGF-WPSF-------------FGLKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGR------EAEF  417 (477)
T ss_pred             HHHHHHHHHHHHh-hhcc-------------cCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCch------hhHH
Confidence            6633222222100 0100             011256678888889999999999999999999999988      8999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHhhccccc-chhhhHHHHHHHHHHHHHHHHcc
Q 008096          173 FNWYYFVMGAAVLVAVTVLVYIQDNVG-WNWGLGIPTVAMFLSIIAFVFGY  222 (577)
Q Consensus       173 ~~~~~~~~~ig~~lg~~i~~~l~~~~g-w~~~f~~~~~~~~~~~~~~~~~~  222 (577)
                      +|+|.......+.+||++.|.+.+..| -|+.+....++.+++++++....
T Consensus       418 Fgly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~~l~~lf~~gl~ll~~v~  468 (477)
T PF11700_consen  418 FGLYAITGKASSWLGPLLFGLITDATGSQRYGFLFLLVLFLIGLILLFFVD  468 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhhcc
Confidence            999999999999999999999998876 88888877777777777765543

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.21  E-value=1.5e-10  Score=125.21  Aligned_cols=175  Identities=15%  Similarity=0.127  Sum_probs=121.5

Q ss_pred             ehHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhHhhhhchhhhhhhhhhcc-chhHH-HHHHHHHHHH
Q 008096           19 MPFIFANEVCEKLAVVGFHANMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADTYA-GRFWT-ITVASIIYQI   96 (577)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~lg~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~-Grk~~-~~~~~~~~~i   96 (577)
                      ++...+..++.....+++..++|.|+++++|++..+++++...+.++..++.++.|+++||+. |||+. ....+.+..+
T Consensus       255 ~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~~~  334 (452)
T PRK11273        255 LWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTI  334 (452)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHH
Confidence            444455666666777888999999999999999999999999999999999999999999971 33432 2222333333


Q ss_pred             HHHHHHHhhhcCCCCCCCCCCCCcccccccchhHHHHHHHHHHHhccCCcccchhhhhhccCCCCCchhhhhhhhhhhHH
Q 008096           97 GMFSLTLSAILPQLRPPPCQGDQVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWY  176 (577)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  176 (577)
                      +.+.+.+..                    ..+....++..++.|.+.....+....+..|.+|+++      |+++.++.
T Consensus       335 ~~~~~~~~~--------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~  388 (452)
T PRK11273        335 ATIVYWLNP--------------------AGNPTVDMACMIVIGFLIYGPVMLIGLHALELAPKKA------AGTAAGFT  388 (452)
T ss_pred             HHHHHHHhc--------------------ccChHHHHHHHHHHHHHHHhHHHHHHHHHHHHcChhh------hhhHHHHH
Confidence            333322211                    0123333344445554433323333456779999888      99999999


Q ss_pred             HHHHHHHHHH-HHHHHHhhcccccchhhhHHHHHHHHHHHHHHH
Q 008096          177 YFVMGAAVLV-AVTVLVYIQDNVGWNWGLGIPTVAMFLSIIAFV  219 (577)
Q Consensus       177 ~~~~~ig~~l-g~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~  219 (577)
                      +...++|+.+ +|.+.|++.+.+||+..|++.++..+++.+...
T Consensus       389 ~~~~~~g~~~~g~~v~g~l~~~~g~~~~f~~~~~~~~~~~~~~~  432 (452)
T PRK11273        389 GLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLI  432 (452)
T ss_pred             HHHHHHHHHHhhhhhHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence            9888888654 799999999999999999888776666655443

>TIGR01272 gluP glucose/galactose transporter

Probab=99.21  E-value=3.8e-10  Score=115.61  Aligned_cols=80  Identities=8%  Similarity=-0.133  Sum_probs=67.9

Q ss_pred             hhHHHHHHHHHHHhccCCcccchhhhhhccCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhccc----------
Q 008096          128 QLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAVLVAVTVLVYIQDN----------  197 (577)
Q Consensus       128 ~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~lg~~i~~~l~~~----------  197 (577)
                      ++..++++.++.|.|.+..++++.+++++..|+++      +.+.+++......+|..+||++++.+...          
T Consensus         9 ~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~------~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~   82 (310)
T TIGR01272         9 YYVLFLGALFVLASGLTILQVAANPYVSILGPIET------AASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVA   82 (310)
T ss_pred             HHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcch------HHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhh
Confidence            67889999999999999999999999999999877      77889999999999999999999876621          


Q ss_pred             ------ccchhhhHHHHHHHHH
Q 008096          198 ------VGWNWGLGIPTVAMFL  213 (577)
Q Consensus       198 ------~gw~~~f~~~~~~~~~  213 (577)
                            .+|+++|++.+.+.++
T Consensus        83 ~~~~~~~~~~~~yl~ia~~~~~  104 (310)
T TIGR01272        83 TANAEAAKVHTPYLLLAGALAV  104 (310)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHH
Confidence                  4688888855554333

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.20  E-value=4.5e-10  Score=122.59  Aligned_cols=179  Identities=12%  Similarity=0.039  Sum_probs=131.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHH-HHhHhhhhchhhhhhhhhhccchhHHHHHHHHHHHHHH
Q 008096           20 PFIFANEVCEKLAVVGFHANMISYLTTQLHMPLTKAANTLT-NFGGTGSLTPLIGAFVADTYAGRFWTITVASIIYQIGM   98 (577)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~lg~s~~~~~~i~~-~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~i~~   98 (577)
                      +.+....++.....+....+.+.|+.+++|+|..+.+++.. ...++..++.+++|+++||+ |+|+.+.++.++..++.
T Consensus       225 ~~~ll~~~l~~~~~~~~~~~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~-g~~~~l~i~~~l~~l~~  303 (491)
T PRK11010        225 WLILLLIVLYKLGDAFAMSLTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRL-SLFRALMIFGILQGVSN  303 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHH
Confidence            33344445555666666778888988889999999999985 55678999999999999998 99998877666555544


Q ss_pred             HHHHHhhhcCCCCCCCCCCCCcccccccchhHHHHHHHHHHHhccCCcccchhhhhhccCCCCCchhhhhhhhhhhHHHH
Q 008096           99 FSLTLSAILPQLRPPPCQGDQVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYF  178 (577)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~  178 (577)
                      +.+......+                  .+...+.+..++..++.|...+...++..+..+++.      +++.+++.+.
T Consensus       304 l~~~~l~~~~------------------~~~~~l~~~~~l~~~~~g~~~~~~~a~~~~l~~~~~------~~t~~gl~~s  359 (491)
T PRK11010        304 AGYWLLSITD------------------KNLYSMGAAVFFENLCGGMGTAAFVALLMTLCNKSF------SATQFALLSA  359 (491)
T ss_pred             HHHHHHHhcc------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC------cHHHHHHHHH
Confidence            3332211000                  134444555556555555555677888888888777      6778999999


Q ss_pred             HHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHHHHHHHHHccc
Q 008096          179 VMGAAVLVAVTVLVYIQDNVGWNWGLGIPTVAMFLSIIAFVFGYP  223 (577)
Q Consensus       179 ~~~ig~~lg~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~  223 (577)
                      ..++|..+++.+.|++.+.+||+..|.+.+++.+++.+.....++
T Consensus       360 ~~~lg~~~~~~~~G~l~~~~G~~~~f~~~~~~~l~~l~~~~~~~~  404 (491)
T PRK11010        360 LSAVGRVYVGPVAGWFVEAHGWPTFYLFSVAAAVPGLLLLLVCRQ  404 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999988899999999999999998888888777776665543

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.20  E-value=5.4e-10  Score=115.59  Aligned_cols=179  Identities=12%  Similarity=0.095  Sum_probs=148.4

Q ss_pred             CcceehHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhHhhhhchhhhhhhhhhccchhHHHHHHHHHH
Q 008096           15 GIITMPFIFANEVCEKLAVVGFHANMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADTYAGRFWTITVASIIY   94 (577)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~lg~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~   94 (577)
                      +.+.++..+...++...+.|...+|+.+++++..|+|.++.+++...+.++..++.+++|+++||  +.|+++....++.
T Consensus       209 ~~p~v~~~l~~t~l~~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr--~~~~~l~~~~~l~  286 (394)
T COG2814         209 RRPGVLLGLLATFLFMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR--GPRRALIAALLLL  286 (394)
T ss_pred             cCchHHHHHHHHHHHHcchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc--cchhHHHHHHHHH
Confidence            34556777778888888999999999999999999999999999999999999999999999998  7888888888888


Q ss_pred             HHHHHHHHHhhhcCCCCCCCCCCCCcccccccchhHHHHHHHHHHHhccCCcccchhhhhhccCCCCCchhhhhhhhhhh
Q 008096           95 QIGMFSLTLSAILPQLRPPPCQGDQVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFN  174 (577)
Q Consensus        95 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  174 (577)
                      ++....+.+..                     .+.+...+..++.|++.+......+.-.++..| ++      +..+.+
T Consensus       287 a~~~l~l~~~~---------------------~~~~~~~~~~~~wg~a~~~~~~~~~~~~a~~~p-~~------~~~a~s  338 (394)
T COG2814         287 ALALLALTFTG---------------------ASPALALALLFLWGFAFSPALQGLQTRLARLAP-DA------ADLAGS  338 (394)
T ss_pred             HHHHHHHHHhc---------------------chHHHHHHHHHHHHHHhhhhhhHHHHHhcccCC-Cc------hHHHHH
Confidence            87777776654                     145566666777888877766666666666333 33      678899


Q ss_pred             HHHHHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHHHHHHHHHccc
Q 008096          175 WYYFVMGAAVLVAVTVLVYIQDNVGWNWGLGIPTVAMFLSIIAFVFGYP  223 (577)
Q Consensus       175 ~~~~~~~ig~~lg~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~  223 (577)
                      ++....|+|..+|..++|.+.+++|+....++.++..+++.++.....+
T Consensus       339 l~~aa~nlgia~GA~lGG~v~~~~g~~~~~~~~a~l~~~a~~~~~~~~~  387 (394)
T COG2814         339 LNVAAFNLGIALGAALGGLVLDALGYAATGWVGAALLLLALLLALLSAR  387 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999988888777665544

>PRK15075 citrate-proton symporter; Provisional

Probab=99.20  E-value=3.2e-10  Score=121.90  Aligned_cols=152  Identities=12%  Similarity=0.067  Sum_probs=110.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhHhhhhchhhhhhhhhhccchhHHHHHHHHHHHHHHH-HHH
Q 008096           24 ANEVCEKLAVVGFHANMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADTYAGRFWTITVASIIYQIGMF-SLT  102 (577)
Q Consensus        24 ~~~~~~~~~~~~~~~~l~~~l~~~lg~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~i~~~-~~~  102 (577)
                      ...++....++.+..++|.|+++.+|++..+.+++...+.++..++.+++|+++||+ |||+.+..+.++..+..+ ...
T Consensus       245 ~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~-g~r~~~~~~~~~~~~~~~~~~~  323 (434)
T PRK15075        245 LMVAMTTVSFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRI-GRRPVLIAFTVLAILTAYPALS  323 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHHHH
Confidence            344456667788899999999988999999999999899999999999999999998 999988776554433221 111


Q ss_pred             HhhhcCCCCCCCCCCCCcccccccchhHHHHHHHHHHHhccCCcccchhhhhhccCCCCCchhhhhhhhhhhHHHHHH-H
Q 008096          103 LSAILPQLRPPPCQGDQVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVM-G  181 (577)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~-~  181 (577)
                      ...  +                 ..+........++.+++.+...+....+..|.+|++.      |+.+.++.+... .
T Consensus       324 ~~~--~-----------------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~e~~p~~~------rg~~~g~~~~~~~~  378 (434)
T PRK15075        324 WLV--A-----------------APSFARMLAVELWLSFLYGSYNGAMVVALTEVMPAEV------RTAGFSLAYSLATA  378 (434)
T ss_pred             HHH--c-----------------CCchHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCCc------cchheeHHHHHHHH
Confidence            111  0                 0122223333445556666666777788999999888      889999855444 4


Q ss_pred             HHHHHHHHHHHhhcccccch
Q 008096          182 AAVLVAVTVLVYIQDNVGWN  201 (577)
Q Consensus       182 ig~~lg~~i~~~l~~~~gw~  201 (577)
                      +++.++|.+.+++.+..|++
T Consensus       379 ~~g~~~p~~~g~i~~~~g~~  398 (434)
T PRK15075        379 IFGGFTPAISTWLIHVTGDK  398 (434)
T ss_pred             HHhhhHHHHHHHHHHhcCCc
Confidence            46788999999999888864

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.19  E-value=1.8e-10  Score=124.53  Aligned_cols=170  Identities=11%  Similarity=0.028  Sum_probs=133.1

Q ss_pred             ehHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhHhhhhchhhhhhhhhhc-cchhHHHHHH--HHHHH
Q 008096           19 MPFIFANEVCEKLAVVGFHANMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADTY-AGRFWTITVA--SIIYQ   95 (577)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~lg~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~-~Grk~~~~~~--~~~~~   95 (577)
                      ++......++..+.++....+++.|++ ++|++..+++++.+...++..++.+++|+++||+ .++|+...++  .++..
T Consensus       243 ~~~~~~~~~l~~~~~~~~~~~l~~~~~-~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~  321 (455)
T TIGR00892       243 FLVYLSGNVIMFLGFFAPIIFLVPYAK-DKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNG  321 (455)
T ss_pred             HHHHHHHHHHHHHHccchHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHH
Confidence            344444556666777778889999986 4799999999999999999999999999999984 1334333333  33333


Q ss_pred             HHHHHHHHhhhcCCCCCCCCCCCCcccccccchhHHHHHHHHHHHhccCCcccchhhhhhccCCCCCchhhhhhhhhhhH
Q 008096           96 IGMFSLTLSAILPQLRPPPCQGDQVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNW  175 (577)
Q Consensus        96 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  175 (577)
                      ++.+++.+..                      +.+.+++.+++.|++.+...++..+++.|.+|+++      +++.+++
T Consensus       322 l~~ll~~~~~----------------------~~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~------~g~~~g~  373 (455)
T TIGR00892       322 LTHLLCALAG----------------------DYTGLVIYCIFFGLSFGSVGALLFEVLMDLVGAQR------FSSAVGL  373 (455)
T ss_pred             HHHHHHHHhc----------------------hHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhHHH------HhhHHhH
Confidence            4444444333                      56777888999999999999999999999999877      8999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhcccc-cchhhhHHHHHHHHHHHHH
Q 008096          176 YYFVMGAAVLVAVTVLVYIQDNV-GWNWGLGIPTVAMFLSIIA  217 (577)
Q Consensus       176 ~~~~~~ig~~lg~~i~~~l~~~~-gw~~~f~~~~~~~~~~~~~  217 (577)
                      ++...++|..+||.++|++.+.. +|++.|++.+++.+++.+.
T Consensus       374 ~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~~~~li~~~~  416 (455)
T TIGR00892       374 VTIVECCAVLIGPPLAGRLVDATKNYKYIFYASGSIVVSAGLF  416 (455)
T ss_pred             HHHHHHHHHHccccceeeeehhcCCcchHHHHhhHHHHHHHHH
Confidence            99999999999999999998877 4999998888776655543

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.18  E-value=5.5e-10  Score=119.96  Aligned_cols=168  Identities=14%  Similarity=0.017  Sum_probs=111.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhHhhhhchhhhhhhhhhccchhHHHHHHHHHHHHHHHHHHH-h
Q 008096           26 EVCEKLAVVGFHANMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADTYAGRFWTITVASIIYQIGMFSLTL-S  104 (577)
Q Consensus        26 ~~~~~~~~~~~~~~l~~~l~~~lg~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~i~~~~~~~-~  104 (577)
                      .++....+|++..++|.|+.+++|++..+.+...+...++..++.++.|+++||+ |||+.+.++.++..+..+.... .
T Consensus       252 ~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~-grr~~~~~~~~~~~~~~~~~~~~~  330 (432)
T PRK10406        252 TAAGSLCFYTFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKI-GRRTSMLCFGSLAALFTVPILSAL  330 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchHHHHHHHHHHHHHHHHHHHHH
Confidence            3344677889999999999999999999999999888888889999999999998 9999887766544333322211 1


Q ss_pred             hhcCCCCCCCCCCCCcccccccchhHHHHHHHHHHHhccCCcccchhhhhhccCCCCCchhhhhhhhhhhHHHHHHHH-H
Q 008096          105 AILPQLRPPPCQGDQVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGA-A  183 (577)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~i-g  183 (577)
                      .+.                   .+....+....+...+.+...+...++.+|.+|++.      |+.++|+.+...++ +
T Consensus       331 ~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~fp~~~------r~t~~g~~~~~g~~~~  385 (432)
T PRK10406        331 QNV-------------------SSPYAAFGLVMCALLIVSFYTSISGILKAEMFPAQV------RALGVGLSYAVANALF  385 (432)
T ss_pred             HcC-------------------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCc------cchhhhHHHHHHHHHH
Confidence            100                   011211211222223333334566788899999988      99999997766553 3


Q ss_pred             HHHHHHHHHhhccccc-chhhhHHHHHHHHHHHHHHHH
Q 008096          184 VLVAVTVLVYIQDNVG-WNWGLGIPTVAMFLSIIAFVF  220 (577)
Q Consensus       184 ~~lg~~i~~~l~~~~g-w~~~f~~~~~~~~~~~~~~~~  220 (577)
                      +...|.+.+++. ..| |...+++.++..+++.+...+
T Consensus       386 g~~~p~~~~~l~-~~g~~~~~~~~~~~~~~i~~~~~~~  422 (432)
T PRK10406        386 GGSAEYVALSLK-SIGMETAFFWYVTLMAVVAFLVSLM  422 (432)
T ss_pred             HhHHHHHHHHHH-HhCCCcHHHHHHHHHHHHHHHHHHH
Confidence            445777777664 445 555566555555555555444

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.17  E-value=3.9e-10  Score=121.47  Aligned_cols=166  Identities=13%  Similarity=0.049  Sum_probs=120.2

Q ss_pred             HHHHHHHHhcCCChHHHHHHHHHHhHhhhhchhhhhhhhhhccchhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCC
Q 008096           39 NMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADTYAGRFWTITVASIIYQIGMFSLTLSAILPQLRPPPCQGD  118 (577)
Q Consensus        39 ~l~~~l~~~lg~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  118 (577)
                      +...+..+++|++..+.++......++..++.+++|+++||+ |||+.+.+++++..++.+++.+...... .       
T Consensus       305 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-------  375 (481)
T TIGR00879       305 YYSPTIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRF-GRRPLLLIGAAGMAICLFVLGILGASFV-T-------  375 (481)
T ss_pred             HHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHHHHHhhccc-C-------
Confidence            334444567899999999999999999999999999999998 9999999998888887777764320000 0       


Q ss_pred             CcccccccchhHHHHH-HHHHHHhccCCcccchhhhhhccCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhccc
Q 008096          119 QVCKEADTGQLAILYA-SLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAVLVAVTVLVYIQDN  197 (577)
Q Consensus       119 ~~~~~~~~~~~~~~~~-~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~lg~~i~~~l~~~  197 (577)
                         ......+...+.. ..+..+.+. +..+...++..|.+|+++      |+++.++.+...++|.+++|.+.+++.++
T Consensus       376 ---~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~p~~~------~~~~~~~~~~~~~lg~~i~~~~~~~~~~~  445 (481)
T TIGR00879       376 ---GSSKSSGNVAIVFILLFIAFFAM-GWGPVPWVIVSEIFPLSL------RPKGISIAVAANWLANFIVGFLFPTMLES  445 (481)
T ss_pred             ---CcccchhHHHHHHHHHHHHHHHc-cccCeehhhhhccCChHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence               0000002222222 222233333 345777788899999877      99999999999999999999999999888


Q ss_pred             ccchhhhHHHHHHHHHHHHHHHHccc
Q 008096          198 VGWNWGLGIPTVAMFLSIIAFVFGYP  223 (577)
Q Consensus       198 ~gw~~~f~~~~~~~~~~~~~~~~~~~  223 (577)
                      .+|++.|++.+++.+++.++..+..+
T Consensus       446 ~~~~~~f~~~~~~~~~~~i~~~~~~~  471 (481)
T TIGR00879       446 IGVGGVFIFFGGLNVLGLIFVYFFLP  471 (481)
T ss_pred             cCccceehhHHHHHHHHHHHHheecc
Confidence            89999998888777666666554444

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PRK10504 putative transporter; Provisional

Probab=99.14  E-value=8.1e-10  Score=119.94  Aligned_cols=157  Identities=11%  Similarity=0.042  Sum_probs=125.2

Q ss_pred             eehHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhHhhhhchhhhhhhhhhccchhHHHHHHHHHHHHH
Q 008096           18 TMPFIFANEVCEKLAVVGFHANMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADTYAGRFWTITVASIIYQIG   97 (577)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~lg~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~i~   97 (577)
                      .....+...++..........+.|.|++..+|.+..+.+++.....++..++.++.|+++||+ |||+++..+.++..++
T Consensus       262 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~-g~~~~~~~~~~~~~~~  340 (471)
T PRK10504        262 TFSLGLAGSFAGRIGSGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRF-GYRRVLVATTLGLALV  340 (471)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchHHHHHHHHHHHHH
Confidence            445555566666666666666788888888999999999999999999888889999999998 9999999888877777


Q ss_pred             HHHHHHhhhcCCCCCCCCCCCCcccccccchhHHHHHHHHHHHhccCCcccchhhhhhccCCCCCchhhhhhhhhhhHHH
Q 008096           98 MFSLTLSAILPQLRPPPCQGDQVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYY  177 (577)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~  177 (577)
                      ..++.+..   .                ..+.+.+.+..++.|++.+...+...++..+.+|+++      ++.++++++
T Consensus       341 ~~~~~~~~---~----------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~~~~~  395 (471)
T PRK10504        341 SLLFMLVA---L----------------LGWYYLLPFVLFLQGMVNSTRFSSMNTLTLKDLPDNL------ASSGNSLLS  395 (471)
T ss_pred             HHHHHhcc---c----------------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHh------ccchHHHHH
Confidence            66665432   0                1133334455667788888888889999999999877      899999999


Q ss_pred             HHHHHHHHHHHHHHHhhcccccc
Q 008096          178 FVMGAAVLVAVTVLVYIQDNVGW  200 (577)
Q Consensus       178 ~~~~ig~~lg~~i~~~l~~~~gw  200 (577)
                      ....+|..+|+.++|.+.+..|+
T Consensus       396 ~~~~~g~~ig~~i~g~ll~~~g~  418 (471)
T PRK10504        396 MIMQLSMSIGVTIAGLLLGLFGQ  418 (471)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhh
Confidence            99999999999999988766554

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.13  E-value=9.4e-10  Score=120.02  Aligned_cols=172  Identities=15%  Similarity=0.133  Sum_probs=147.0

Q ss_pred             ehHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhHhhhhchhhhhhhhhhccchhHHHHHHHHHHHHHH
Q 008096           19 MPFIFANEVCEKLAVVGFHANMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADTYAGRFWTITVASIIYQIGM   98 (577)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~lg~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~i~~   98 (577)
                      +..++...++.++....+...+|.+..+.+|.+....|++.+.+.+|+.++.++.+++.+|+ ++++.+..+.++++++.
T Consensus       220 l~~~l~~~~~~~l~~~a~~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~-~~~~lv~~~~~~~a~~~  298 (524)
T PF05977_consen  220 LRSVLLRSFLFNLFASAVWALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRL-SSRRLVLLASLLFALAL  298 (524)
T ss_pred             HHHHHHHHHHHHHhhhHHHHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhccc-CcchhhHHHHHHHHHHH
Confidence            33344444555555556677889999999999999999999999999999999999999998 99999999998888888


Q ss_pred             HHHHHhhhcCCCCCCCCCCCCcccccccchhHHHHHHHHHHHhccCCcccchhhhhhccCCCCCchhhhhhhhhhhHHHH
Q 008096           99 FSLTLSAILPQLRPPPCQGDQVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYF  178 (577)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~  178 (577)
                      +.++++.                      +.+...+..++.|++.....+...+.+.+..|++.      ||+.++++++
T Consensus       299 ~~lal~~----------------------~~~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~------~GRv~si~~~  350 (524)
T PF05977_consen  299 LLLALSP----------------------SFWLALIALFLAGAAWIIANSSLNTLVQLSVPDWV------RGRVFSIYQM  350 (524)
T ss_pred             HHHhcch----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH------HhHHHHHHHH
Confidence            8888765                      67778888899999999999999999999999888      9999999999


Q ss_pred             HHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHHHHHHHH
Q 008096          179 VMGAAVLVAVTVLVYIQDNVGWNWGLGIPTVAMFLSIIAFV  219 (577)
Q Consensus       179 ~~~ig~~lg~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~  219 (577)
                      ....+..+|.++.|.+.+.+|-+.++.++++..+++.++..
T Consensus       351 ~~~g~~~lGsll~G~la~~~g~~~al~~a~~~lll~~~~~~  391 (524)
T PF05977_consen  351 VFFGGMPLGSLLWGFLADHFGVRTALLIAGAALLLSALIAL  391 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999888887776655555443

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=99.12  E-value=8.9e-10  Score=106.50  Aligned_cols=185  Identities=12%  Similarity=0.059  Sum_probs=147.4

Q ss_pred             CCCcccCCCcceehHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhHhhhhchhhhhhhhhhccchhHH
Q 008096            7 SHVNRKKGGIITMPFIFANEVCEKLAVVGFHANMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADTYAGRFWT   86 (577)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~lg~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grk~~   86 (577)
                      +..+.++.....++.+...+++..++.+=+.+.-+.++++.+|+|...++.+.+.......+.+++.|.++||+ |++-.
T Consensus       254 pkLtdv~~f~ppfw~~~iicv~yyva~fPFi~lg~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~-G~n~~  332 (459)
T KOG4686|consen  254 PKLTDVNTFYPPFWVLVIICVLYYVAWFPFITLGPMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKY-GFNLW  332 (459)
T ss_pred             cccccccccCccHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhh-cceeh
Confidence            34456688888999999999999999998999999999999999999999999999999999999999999999 99887


Q ss_pred             HHHHH-HHHHHHHHHHHHhhhcCCCCCCCCCCCCcccccccchhHHHHHHHHHHHhccCCcccchhhhhhccCCCCCchh
Q 008096           87 ITVAS-IIYQIGMFSLTLSAILPQLRPPPCQGDQVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQ  165 (577)
Q Consensus        87 ~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~  165 (577)
                      .+.+. +....+..++.++.                        +.=+.+..++|+.......+.+.+++...|+++   
T Consensus       333 wv~~a~~~tl~~H~~l~Ft~------------------------lsPy~~m~~lGLsysllAcslWP~va~~vpE~q---  385 (459)
T KOG4686|consen  333 WVASACILTLLGHSGLFFTF------------------------LSPYTSMTFLGLSYSLLACSLWPCVASLVPEEQ---  385 (459)
T ss_pred             hHHHHHHHHHHHhhhHHhhh------------------------ccHHHHHHHHhhhHHHHHHHHhhhhhhhCCHHH---
Confidence            65554 44556777777654                        223466777888888777778888999999988   


Q ss_pred             hhhhhhhhhHHHHHHHHHHHHHHHHHHhhccccc---chhhhHHHHHHH-HHHHHHHHHcc
Q 008096          166 ATKTWKYFNWYYFVMGAAVLVAVTVLVYIQDNVG---WNWGLGIPTVAM-FLSIIAFVFGY  222 (577)
Q Consensus       166 ~~~r~~~~~~~~~~~~ig~~lg~~i~~~l~~~~g---w~~~f~~~~~~~-~~~~~~~~~~~  222 (577)
                         .|++++..+.-.|+|-.+-|++.|++.+.-|   |--.|.+....+ +.+..+++...
T Consensus       386 ---LGTaygf~qsIqNLgla~i~Iiag~i~d~~g~y~~le~ffl~~~~~aL~svgil~~~N  443 (459)
T KOG4686|consen  386 ---LGTAYGFIQSIQNLGLAFIPIIAGFIADGDGSYDNLEAFFLIIGLMALTSVGILFYLN  443 (459)
T ss_pred             ---hcchHHHHHHHHhhhhhHHhhhhheeecCCCchhhHHHHHHHHHHHHHHHHHHHhhee
Confidence               9999999999999999999999999987654   444555444433 33333344433

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.10  E-value=8.9e-10  Score=118.59  Aligned_cols=180  Identities=13%  Similarity=0.093  Sum_probs=120.8

Q ss_pred             ehHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhHhhhhchhhhhhhhhhccchhHHHHHHHHHHHHHH
Q 008096           19 MPFIFANEVCEKLAVVGFHANMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADTYAGRFWTITVASIIYQIGM   98 (577)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~lg~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~i~~   98 (577)
                      ++.+....++.....++...++|.|+++..|+|..+++++...+.+...++.+++|+++||+ ++++....+..+..+..
T Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~-~~~~~~~~~~~~~~~~~  331 (438)
T TIGR00712       253 LWYIAIANVFVYLLRYGVLDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKV-FKGNRGATGVFFMTLVT  331 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCcccHHHHHHHHHHH
Confidence            33444455566667788899999999998999999999999999999999999999999998 65442223332222211


Q ss_pred             HH-HHHhhhcCCCCCCCCCCCCcccccccchhHHHHHHHHHHHhccCCcccchhhhhhccCCCCCchhhhhhhhhhhHHH
Q 008096           99 FS-LTLSAILPQLRPPPCQGDQVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYY  177 (577)
Q Consensus        99 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~  177 (577)
                      +. ..+.. .+.                 .+.+......+..|.+..+..........|.+|+++      |+.+.++++
T Consensus       332 ~~~~~~~~-~~~-----------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~g~~~  387 (438)
T TIGR00712       332 IAVIVYWM-NPA-----------------GNPLVDMICMIVIGFLIYGPVMLIGLHALELAPKKA------AGTAAGFTG  387 (438)
T ss_pred             HHHHHHHh-cCC-----------------CchHHHHHHHHHHHHHHccHHHHHHHHHHHhcChhh------eeeehhhhc
Confidence            11 11111 000                 122333334444454433322222345778899877      999999998


Q ss_pred             HHHHHH-HHHHHHHHHhhcccccchhhhHHHHHHHHHHHHHHHHccc
Q 008096          178 FVMGAA-VLVAVTVLVYIQDNVGWNWGLGIPTVAMFLSIIAFVFGYP  223 (577)
Q Consensus       178 ~~~~ig-~~lg~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~  223 (577)
                      ...++| .++||.+.|.+.+..||...|++.....+++.+...+..+
T Consensus       388 ~~~~~gg~~~gp~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  434 (438)
T TIGR00712       388 LFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMI  434 (438)
T ss_pred             hHHHhhhhhhcchhHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHh
Confidence            888876 4689999999999899999998877766666555554443

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.09  E-value=9e-10  Score=114.40  Aligned_cols=153  Identities=14%  Similarity=0.105  Sum_probs=127.2

Q ss_pred             ehHHHHHHHHHHHHHHHHH-HHHHHHHHHhcCCChHHHHHHHHHHhHhhhhchhhhhhhhhhccchhHHHHHHHHHHHHH
Q 008096           19 MPFIFANEVCEKLAVVGFH-ANMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADTYAGRFWTITVASIIYQIG   97 (577)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~-~~l~~~l~~~lg~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~i~   97 (577)
                      ++......++.....+... .+.|.|.++.+|.+..+.+.+.....++..++.++.|++.||+ |||+.+..+.++..++
T Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~  290 (365)
T TIGR00900       212 LRTLLLLALLFNLVFAPAIVALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYF-KRMALMTGAIFVIGLA  290 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-chhHHHHHHHHHHHHH
Confidence            3444445555566666665 7778888878999999999999999999999999999999998 9999998887777776


Q ss_pred             HHHHHHhhhcCCCCCCCCCCCCcccccccchhHHHHHHHHHHHhccCCcccchhhhhhccCCCCCchhhhhhhhhhhHHH
Q 008096           98 MFSLTLSAILPQLRPPPCQGDQVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYY  177 (577)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~  177 (577)
                      .....+..                    + +.+.+++..++.|++.+...+...+++.|.+|+++      |+++.++++
T Consensus       291 ~~~~~~~~--------------------~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~~~~~  343 (365)
T TIGR00900       291 ILVVGLTP--------------------P-NFPLFLVLWFAIGVGYGPINVPQGTLLQRRVPAEL------LGRVFGAQF  343 (365)
T ss_pred             HHHHHhhc--------------------h-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH------HHHHHHHHH
Confidence            66666543                    0 26667788899999999999999999999999877      999999999


Q ss_pred             HHHHHHHHHHHHHHHhhccccc
Q 008096          178 FVMGAAVLVAVTVLVYIQDNVG  199 (577)
Q Consensus       178 ~~~~ig~~lg~~i~~~l~~~~g  199 (577)
                      ...++|..++|.+.|++.+.+|
T Consensus       344 ~~~~~~~~~g~~~~g~l~~~~g  365 (365)
T TIGR00900       344 SLSHAAWPLGLILAGPLADHLG  365 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcC
Confidence            9999999999999999987653

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.09  E-value=1.9e-09  Score=117.31  Aligned_cols=171  Identities=8%  Similarity=0.029  Sum_probs=112.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhHhhhhchhhhhhhhhhccchhH-------HHHHHHHH
Q 008096           21 FIFANEVCEKLAVVGFHANMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADTYAGRFW-------TITVASII   93 (577)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~l~~~l~~~lg~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grk~-------~~~~~~~~   93 (577)
                      .+.+..++.....+.+..++|.|+.+++|++..+++.+.+.+.++..++.+++|+++||+ |||+       ...+..++
T Consensus       256 ~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~-~~r~~~~~r~~~~~~~~~l  334 (476)
T PLN00028        256 ILALTYGYSFGVELTMDNIIAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVA-ARRFGMRGRLWALWIVQTL  334 (476)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHH-HHhcCcchhHHHHHHHHHH
Confidence            333343444444566777899999999999999999999999999999999999999998 8652       22222222


Q ss_pred             HHHHHHHHHHhhhcCCCCCCCCCCCCcccccccchhHHHHHHHHHHHhccCCcccchhhhhhccCCCCCchhhhhhhhhh
Q 008096           94 YQIGMFSLTLSAILPQLRPPPCQGDQVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYF  173 (577)
Q Consensus        94 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  173 (577)
                      ..+..++.+...                      +.....+..++.+++.+...+...++..+..| +.      |+...
T Consensus       335 ~~i~~~~~~~~~----------------------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~------~g~~~  385 (476)
T PLN00028        335 GGVFCIWLGRAN----------------------SLGAAIVVMILFSIFVQAACGATFGIVPFVSR-RS------LGVIS  385 (476)
T ss_pred             HHHHHHHhcccc----------------------hHHHHHHHHHHHHHHHHHhhhhhcccCcccCh-hh------chhhh
Confidence            222222222111                      33334444455555554445555566666544 33      88889


Q ss_pred             hHHHHHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHHHHHHHHHcc
Q 008096          174 NWYYFVMGAAVLVAVTVLVYIQDNVGWNWGLGIPTVAMFLSIIAFVFGY  222 (577)
Q Consensus       174 ~~~~~~~~ig~~lg~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~  222 (577)
                      ++.+.+.++|+.+++.+.+ .....+|+..|++.+++.+++.++.++.+
T Consensus       386 g~~~~~g~lg~~i~~~l~~-~~~~~~y~~~f~~~~~~~~i~~~~~~~~~  433 (476)
T PLN00028        386 GLTGAGGNVGAVLTQLLFF-TGSSYSTETGISLMGVMIIACTLPVAFIH  433 (476)
T ss_pred             hhhhccccHHHHHHHHHHH-hcCCccHhhHHHHHHHHHHHHHHHHHhee
Confidence            9987777778777776644 22334699999998887777766666554

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.08  E-value=2.8e-09  Score=112.54  Aligned_cols=165  Identities=7%  Similarity=-0.021  Sum_probs=129.0

Q ss_pred             ehHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhHhhhhchhhhhhhhhhccchhHHHHHHHHHHHHHH
Q 008096           19 MPFIFANEVCEKLAVVGFHANMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADTYAGRFWTITVASIIYQIGM   98 (577)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~lg~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~i~~   98 (577)
                      .+.+....++..........+++.|++ +.|++..+.+.+.+...++..+..++.|++.||+ |+|+.+..+.+...++.
T Consensus       207 ~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~l~~~~~~~~~~~  284 (382)
T PRK11128        207 VWRFLLCVSLLQGSHAAYYGFSAIYWQ-AAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRW-SARDLLLLSAICGVVRW  284 (382)
T ss_pred             HHHHHHHHHHHHHHhHhHHHHHHHHHH-HCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHH
Confidence            344444555555666667788888995 5899999999999999999999999999999998 99999999998888887


Q ss_pred             HHHHHhhhcCCCCCCCCCCCCcccccccchhHHHHHHHHHHHhccCCcccchhhhhhccCCCCCchhhhhhhhhhhHHH-
Q 008096           99 FSLTLSAILPQLRPPPCQGDQVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYY-  177 (577)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-  177 (577)
                      ++++.++                      +.+.+++..++.|++.+...+....+..+. ++++      +++..+.+. 
T Consensus       285 ~~~~~~~----------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~-~~~~------~~~~~~~~~~  335 (382)
T PRK11128        285 GLMGSTT----------------------ALPWLIVIQILHCGTFTVCHLAAMRYIAAR-PGSE------VIRLQALYSA  335 (382)
T ss_pred             HHHHhhh----------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHhh------hHHHHHHHHH
Confidence            7776554                      677788889999999998888888888875 4444      567777765 


Q ss_pred             HHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHHHH
Q 008096          178 FVMGAAVLVAVTVLVYIQDNVGWNWGLGIPTVAMFLSI  215 (577)
Q Consensus       178 ~~~~ig~~lg~~i~~~l~~~~gw~~~f~~~~~~~~~~~  215 (577)
                      ....+|..+||.++|.+.+.+|+. .++..+++.++++
T Consensus       336 ~~~~~g~~ig~~i~G~l~~~~g~~-~~~~~~~~~~~~~  372 (382)
T PRK11128        336 LAMGGSIAIMTVLSGFLYQHLGAG-VFWVMALVALPAL  372 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccHH-HHHHHHHHHHHHH
Confidence            445778899999999999988874 5555555444443

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.07  E-value=2.8e-09  Score=113.94  Aligned_cols=148  Identities=16%  Similarity=0.071  Sum_probs=109.5

Q ss_pred             HHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhHhhhhchhhhhhhhhhccchhHHHHHHHHHHHHHHHHHHHhhhcCCCC
Q 008096           32 AVVGFHANMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADTYAGRFWTITVASIIYQIGMFSLTLSAILPQLR  111 (577)
Q Consensus        32 ~~~~~~~~l~~~l~~~lg~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~~~  111 (577)
                      ..+.+..++|.|+++ .|++..+.+.+.+...++..++.++.|+++||+ |||+.+..+.++..+..+......   .  
T Consensus       246 ~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~-~~~~~~~~~~~~~~~~~~~~~~~~---~--  318 (426)
T PRK12307        246 ANWPIFGLLPTYLAG-EGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRI-GLKKTFSIGLLMSFLFIFPLFRIP---Q--  318 (426)
T ss_pred             HHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHHHc---c--
Confidence            334567788999875 699999999999999999999999999999998 999999888877665544443221   0  


Q ss_pred             CCCCCCCCcccccccchhHHHHHHHHHHHhccCCcccchhhhhhccCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHHHH
Q 008096          112 PPPCQGDQVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAVLVAVTVL  191 (577)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~lg~~i~  191 (577)
                                     .+...+....+..+.+..+..+..++++.|.+|++.      |++++++.+....+|..++|.+.
T Consensus       319 ---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~~~~~~~~~~gp~~~  377 (426)
T PRK12307        319 ---------------DNYLLLGACLFGLMATNVGVGGLVPKFLYDYFPLEV------RGLGTGLIYNLAATSGTFNSMAA  377 (426)
T ss_pred             ---------------ccHHHHHHHHHHHHHhcccHhHHHHHHHHHhCcHHH------HhhhhhHHHHHHhHHHHHHHHHH
Confidence                           122222222222333334445667788899999877      99999999999999999999999


Q ss_pred             HhhcccccchhhhHHH
Q 008096          192 VYIQDNVGWNWGLGIP  207 (577)
Q Consensus       192 ~~l~~~~gw~~~f~~~  207 (577)
                      |++.+.+|+....++.
T Consensus       378 g~l~~~~g~~~~~~~~  393 (426)
T PRK12307        378 TWLGITMGLGAALTFI  393 (426)
T ss_pred             HHHHHcccHHHHHHHH
Confidence            9999888866543333

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.07  E-value=6.3e-09  Score=110.67  Aligned_cols=168  Identities=11%  Similarity=-0.067  Sum_probs=126.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhHhhhhchhhhhhhhhhccchhHHHHHHHHHHHHHHHHHHH
Q 008096           24 ANEVCEKLAVVGFHANMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADTYAGRFWTITVASIIYQIGMFSLTL  103 (577)
Q Consensus        24 ~~~~~~~~~~~~~~~~l~~~l~~~lg~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~i~~~~~~~  103 (577)
                      ....+.....+....+.|.|+.+++|++..+.++......++..++.++.|+++||+ |+|+.+.++.++..++..+..+
T Consensus       222 ~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~-~~~~~~~~~~~~~~~g~~~~~~  300 (406)
T PRK15402        222 LALGLVSLPLLAWIALSPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRR-PLRSLIRMGLWPMVAGLLLAAL  300 (406)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHHH
Confidence            334444455556667788899889999999999988888888889999999999998 9999999998888877777765


Q ss_pred             hhhcCCCCCCCCCCCCcccccccchhHHHHHHHHHHHhccCCcccchhhhhhccCCCCCchhhhhhhhhhhHHHHHHHHH
Q 008096          104 SAILPQLRPPPCQGDQVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAA  183 (577)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig  183 (577)
                      .....                 ..+.+.++++.++.|+|.+...+...+..... ++++      |++..+.+++...+|
T Consensus       301 ~~~~~-----------------~~~~~~~~~~~~~~g~g~~~~~~~~~~~~~~~-~~~~------~g~~~~~~~~~~~~~  356 (406)
T PRK15402        301 ATVIS-----------------SHAYLWLTAGLSLYAFGIGLANAGLYRLTLFS-SDVS------KGTVSAAMGMLSMLI  356 (406)
T ss_pred             HHHcc-----------------cccHHHHHHHHHHHHHHHHHHhhhHHHHHhhh-cccc------ccHHHHHHHHHHHHH
Confidence            43111                 12455567788889999888777766655433 3355      899999999999999


Q ss_pred             HHHHHHHHHhhcccccchhhhHHHHHHHHHHHH
Q 008096          184 VLVAVTVLVYIQDNVGWNWGLGIPTVAMFLSII  216 (577)
Q Consensus       184 ~~lg~~i~~~l~~~~gw~~~f~~~~~~~~~~~~  216 (577)
                      ..+|+.+.+++.+..++....+...+..++...
T Consensus       357 ~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  389 (406)
T PRK15402        357 FTVGIELSKHAYLGGGNGLFNLFNLANGLLWLL  389 (406)
T ss_pred             HHHHHHHHHhcccCCchHHHHHHHHHHHHHHHH
Confidence            999999999998887776555555444444433

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=99.06  E-value=2e-09  Score=110.53  Aligned_cols=176  Identities=14%  Similarity=0.160  Sum_probs=145.1

Q ss_pred             CCCcceehHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhHhhhhchhhhhhhhhhccchhHHHHHHHH
Q 008096           13 KGGIITMPFIFANEVCEKLAVVGFHANMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADTYAGRFWTITVASI   92 (577)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~lg~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~   92 (577)
                      |+| ++++..+...++.+=+..++.+....|-..++|++..+...+....++.+++++++.|++.||+ |-|+++..+.+
T Consensus       249 ~~~-~~i~~FLiA~~~~~DGv~til~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rf-g~k~vl~~~lv  326 (438)
T COG2270         249 RGR-KNLVLFLIARFFYIDGVNTILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERF-GSKPVLMIGLV  326 (438)
T ss_pred             hcc-cchHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCceeehHHHH
Confidence            444 4777778888888888899999999999999999999999999999999999999999999998 99999999988


Q ss_pred             HHHHHHHHHHHhhhcCCCCCCCCCCCCcccccccchhHHHHHHHHHHHhccCCcccchhhhhhccCCCCCchhhhhhhhh
Q 008096           93 IYQIGMFSLTLSAILPQLRPPPCQGDQVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKY  172 (577)
Q Consensus        93 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~  172 (577)
                      ++.+..+...+..                      ....+.+.-++.|...|+.++.+-++.++++|+++      -++.
T Consensus       327 i~~~~~~~~~~~~----------------------~~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k------~~~f  378 (438)
T COG2270         327 ILSIAALYLIFLE----------------------GELDFWILGLLVGTSLGGAQASSRSYLARLVPKGK------EGRF  378 (438)
T ss_pred             HHHHHHHHHHHcc----------------------ccHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCcc------ccce
Confidence            8776655555432                      22334555567899999999999999999999988      7889


Q ss_pred             hhHHHHHHHHHHHHHHHHHHhhccccc-chhhhHHHHHHHHHHHHHH
Q 008096          173 FNWYYFVMGAAVLVAVTVLVYIQDNVG-WNWGLGIPTVAMFLSIIAF  218 (577)
Q Consensus       173 ~~~~~~~~~ig~~lg~~i~~~l~~~~g-w~~~f~~~~~~~~~~~~~~  218 (577)
                      +|+|+.....++.+||.+.+.+.+..| -|..+....++..++++.+
T Consensus       379 Fglyaltgra~S~~gp~lv~v~t~iTg~~r~g~~~i~vll~iGl~~L  425 (438)
T COG2270         379 FGLYALTGRAASFLGPFLVAVITQITGSSRAGVLSIIVLLLIGLLLL  425 (438)
T ss_pred             eehhhhhhhHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhHhhE
Confidence            999999999999999999999887665 5555554444444444443

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.05  E-value=1.8e-09  Score=115.35  Aligned_cols=162  Identities=9%  Similarity=-0.041  Sum_probs=114.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCCChHHHHHHHHHHhHhhhhchhhhhhhhhhccchhHH-HHHHHHHHHHH
Q 008096           20 PFIFANEVCEKLAVVGFHANMISYLTT-QLHMPLTKAANTLTNFGGTGSLTPLIGAFVADTYAGRFWT-ITVASIIYQIG   97 (577)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~l~~~l~~-~lg~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grk~~-~~~~~~~~~i~   97 (577)
                      +......++....++++.+++|.|+++ ..|+|..+++.+.....++..++.+++|+++||+ +||+. +....++..++
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~-~~r~~~~~~~~~~~~~~  323 (412)
T TIGR02332       245 MLYTLAYFCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRL-KERKHHTALPYLFAAAG  323 (412)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhccc-CccHHHHHHHHHHHHHH
Confidence            344556677778889999999999987 3578899999999999999999999999999998 87664 34343333333


Q ss_pred             HHHHHHhhhcCCCCCCCCCCCCcccccccchhHHHHHHHHHHHhccCCcccchhhhhhccCCCCCchhhhhhhhhhhHHH
Q 008096           98 MFSLTLSAILPQLRPPPCQGDQVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYY  177 (577)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~  177 (577)
                      . ......  +                   +....+....+.++|.....+.......|.+|+++      |+.++++.+
T Consensus       324 ~-~~~~~~--~-------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~------~~~a~g~~~  375 (412)
T TIGR02332       324 W-LLASAT--D-------------------HNLIQLLGIIMASMGSFSAMAIFWTTPDQSISLQA------RAIAIAVIN  375 (412)
T ss_pred             H-HHHHhc--C-------------------CHHHHHHHHHHHHHHhhhhhhHHHhhcccccchHH------HHHHHHHHH
Confidence            2 222111  0                   11111222223333333333444455567788776      999999999


Q ss_pred             HHHHHHHHHHHHHHHhhccccc-chhhhHHHHHH
Q 008096          178 FVMGAAVLVAVTVLVYIQDNVG-WNWGLGIPTVA  210 (577)
Q Consensus       178 ~~~~ig~~lg~~i~~~l~~~~g-w~~~f~~~~~~  210 (577)
                      ...++|.+++|.+.|.+.+..| |++.|++.++.
T Consensus       376 ~~~~~g~~~~p~~~g~i~~~~g~~~~~~~~~~~~  409 (412)
T TIGR02332       376 ATGNIGSALSPFLIGILKDATGSFNSGLWFVAAL  409 (412)
T ss_pred             HhhhhhhhhhhhhcccccccCCCCchhHHHHHHH
Confidence            9999999999999999998775 99988776654

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=99.04  E-value=3.1e-09  Score=109.13  Aligned_cols=186  Identities=15%  Similarity=0.048  Sum_probs=147.5

Q ss_pred             cceehHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhHhhhhchhhhhhhhhhccchhHHHHHHHHHHH
Q 008096           16 IITMPFIFANEVCEKLAVVGFHANMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADTYAGRFWTITVASIIYQ   95 (577)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~lg~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~   95 (577)
                      -+..|.+...++...-++-++..++|.|++++++.+..+++.+...+.+.+.+..+.+|+++||+ |.+|+..+....++
T Consensus       217 ~~~~W~lsllY~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~-Gg~rv~~~~f~~~~  295 (417)
T COG2223         217 NKDTWLLSLLYFATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRI-GGRRVTLAVFVGMA  295 (417)
T ss_pred             CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhc-cchhHHHHHHHHHH
Confidence            46677878888888888899999999999999999999999999999999999999999999999 88887777777777


Q ss_pred             HHHHHHHHhhhcCCCCCCCCCCCCcccccccchhHHHHHHHHHHHhccCCcccchhhhhhccCCCCCchhhhhhhhhhhH
Q 008096           96 IGMFSLTLSAILPQLRPPPCQGDQVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNW  175 (577)
Q Consensus        96 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  175 (577)
                      ++.....+......               ...+...++...+..++..|.-+.....++...+|++       -+...++
T Consensus       296 ~~~~~l~~~~~~~~---------------~~~~~~~~~~~~l~l~~~~G~GnGsvfk~Ip~if~~~-------~G~v~G~  353 (417)
T COG2223         296 LAAALLSLFLTGFG---------------HGGSFVVFVAVFLALFVFAGLGNGSVFKMIPVIFPKE-------TGAVTGI  353 (417)
T ss_pred             HHHHHHHccccccc---------------cCcchHHHHHHHHHHHHHhccCcchheeechHHHHhh-------hhHHHHH
Confidence            77777665431110               1234555555556666666666677788888888753       6788999


Q ss_pred             HHHHHHHHHHHHHHHHHhhccccc-chhhhHHHHHHHHHHHHHHHHcccc
Q 008096          176 YYFVMGAAVLVAVTVLVYIQDNVG-WNWGLGIPTVAMFLSIIAFVFGYPL  224 (577)
Q Consensus       176 ~~~~~~ig~~lg~~i~~~l~~~~g-w~~~f~~~~~~~~~~~~~~~~~~~~  224 (577)
                      .....++|+..-|...+...+..| +..+|++.....+++....+..+.+
T Consensus       354 vga~G~lGGf~lp~~~g~~~~~tg~~~~~f~~~~~~~~~a~v~~~~~y~r  403 (417)
T COG2223         354 VGAIGGLGGFFLPLAFGVSLDLTGSYTGAFMLLLAFYLVALVLTWALYAR  403 (417)
T ss_pred             HHHhccccccchhHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999998999998888887 8899988888777777765555443

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.04  E-value=4.6e-09  Score=114.15  Aligned_cols=160  Identities=13%  Similarity=0.017  Sum_probs=114.9

Q ss_pred             HHHHHHHHHhcCCChHHHHHHHHHHhHhhhhchhhhhhhhhhccchhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCC
Q 008096           38 ANMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADTYAGRFWTITVASIIYQIGMFSLTLSAILPQLRPPPCQG  117 (577)
Q Consensus        38 ~~l~~~l~~~lg~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  117 (577)
                      .+.|.+ .+++|++.....+......+...++.+++|+++||+ |||+.++.+.++.+++.++++.....+         
T Consensus       292 ~~~p~i-~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~-g~r~~~i~~~~~~~v~~~~l~~~~~~~---------  360 (479)
T PRK10077        292 YYAPEI-FKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKF-GRKPLQIIGALGMAIGMFSLGTAFYTQ---------  360 (479)
T ss_pred             HHHHHH-HHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHh-cChHHHHHhHHHHHHHHHHHHHHHhcC---------
Confidence            344444 457899888888888888888899999999999998 999999999999888888776543100         


Q ss_pred             CCcccccccchhHHHHHHHHHHHhccCC-cccchhhhhhccCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHHHHHh---
Q 008096          118 DQVCKEADTGQLAILYASLLLAALGSGG-IRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAVLVAVTVLVY---  193 (577)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~l~g~g~g~-~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~lg~~i~~~---  193 (577)
                              .... ....+.++.+.+.+. ..|...++++|.+|+++      |+++.++.+...++|.++++.+.+.   
T Consensus       361 --------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~------r~~~~g~~~~~~~~g~~~~~~~~p~~~~  425 (479)
T PRK10077        361 --------APGI-VALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAI------RGKALAIAVAAQWIANYFVSWTFPMMDK  425 (479)
T ss_pred             --------cccH-HHHHHHHHHHHHHhccccchhHHHhHhhCChhH------HHHHHHHHHHHHHHHHHHHHHHhHHHHh
Confidence                    0111 222333344444433 34778899999999877      9999999999888888888666543   


Q ss_pred             ---hcccccchhhhHHHHHHHHHHHHHHHHccc
Q 008096          194 ---IQDNVGWNWGLGIPTVAMFLSIIAFVFGYP  223 (577)
Q Consensus       194 ---l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~  223 (577)
                         +.+.++|++.|++.++..+++.++.+...|
T Consensus       426 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  458 (479)
T PRK10077        426 NSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVP  458 (479)
T ss_pred             ccchhhhccCccHHHHHHHHHHHHHHHHHhccc
Confidence               445788988888877766666555544443

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.03  E-value=6.5e-09  Score=109.72  Aligned_cols=167  Identities=9%  Similarity=0.044  Sum_probs=117.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhHhhhhchhhhhhhhhhccchhHHHHHHHHHHHHHHHHHHH
Q 008096           24 ANEVCEKLAVVGFHANMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADTYAGRFWTITVASIIYQIGMFSLTL  103 (577)
Q Consensus        24 ~~~~~~~~~~~~~~~~l~~~l~~~lg~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~i~~~~~~~  103 (577)
                      ...++.....+....+++.|+.+.+|+|..+.+++.+...++..++.++.|++.||+ |+|+.+..+..+..++.++...
T Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~-~~~~~~~~~~~~~~i~~~~~~~  284 (382)
T PRK10091        206 AATMFGNAGVFAWFSYIKPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRY-SPLRIAAVTDFIIVLALLMLFF  284 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheecccc-CchhHHHHHHHHHHHHHHHHHH
Confidence            334444455555667778899888999999999999999999999999999999998 9999999888887777665543


Q ss_pred             hhhcCCCCCCCCCCCCcccccccchhHHHHHHHHHHHhccCCcccchhhhhhccC-CCCCchhhhhhhhhhhHHHHHHHH
Q 008096          104 SAILPQLRPPPCQGDQVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQF-DETDPKQATKTWKYFNWYYFVMGA  182 (577)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~-~~~~~~~~~~r~~~~~~~~~~~~i  182 (577)
                      ..                     .+.+...+..++.+.|..+..+.......+.. +++.      ++.+  ..+...++
T Consensus       285 ~~---------------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~------~~~~--~~~~~~~~  335 (382)
T PRK10091        285 FG---------------------GMKTASLIFAFICCAGLFALSAPLQILLLQNAKGGEL------LGAA--GGQIAFNL  335 (382)
T ss_pred             HH---------------------hhHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCcchH------HHHH--HHHHHHHH
Confidence            22                     02333444555556655544444443333333 3222      3333  33566789


Q ss_pred             HHHHHHHHHHhhccc-ccchhhhHHHHHHHHHHHHHHHH
Q 008096          183 AVLVAVTVLVYIQDN-VGWNWGLGIPTVAMFLSIIAFVF  220 (577)
Q Consensus       183 g~~lg~~i~~~l~~~-~gw~~~f~~~~~~~~~~~~~~~~  220 (577)
                      |..+||.++|++.+. .+|++.+.+.++..++...+...
T Consensus       336 g~~~Gp~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  374 (382)
T PRK10091        336 GSAIGAYCGGMMLTLGLAYNYVALPAALLSFAAMSSLLL  374 (382)
T ss_pred             HHHHHHHHhHHHHHcccCcchHHHHHHHHHHHHHHHHHH
Confidence            999999999998875 68999998887766655554443

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.03  E-value=2.7e-09  Score=111.34  Aligned_cols=161  Identities=14%  Similarity=0.115  Sum_probs=117.9

Q ss_pred             eehHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhHhhhhchhhhhhhhhhccchhHHHHH-HHHH-HH
Q 008096           18 TMPFIFANEVCEKLAVVGFHANMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADTYAGRFWTITV-ASII-YQ   95 (577)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~lg~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~-~~~~-~~   95 (577)
                      .++.+....++.....+++..++|.|+.+.+|++..+.+.+.+.+.++..++.++.|+++||+.+||+.... .... ..
T Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~  296 (379)
T TIGR00881       217 VLWYISLGYVFVYVVRTGILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALII  296 (379)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHHH
Confidence            344455566666677778888999999999999999999999999999999999999999985234433222 1111 11


Q ss_pred             HHHHHHHHhhhcCCCCCCCCCCCCcccccccchhHHHHHHHHHHHhccCCcccchhhhhhccCCCCCchhhhhhhhhhhH
Q 008096           96 IGMFSLTLSAILPQLRPPPCQGDQVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNW  175 (577)
Q Consensus        96 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  175 (577)
                      ++.......   +                 ..+.....+..++.|+...+..+....+..|.+|+++      |+++.++
T Consensus       297 ~~~~~~~~~---~-----------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~g~  350 (379)
T TIGR00881       297 VSLLVYWLN---P-----------------AANPLMDLICLFALGFLVYGPQMLIGVIASELAPKKA------AGTAAGF  350 (379)
T ss_pred             HHHHHHhcC---c-----------------chhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCcch------hHHHHHH
Confidence            111111110   0                 1133445555666676666666667788999999888      9999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhcccccchhhh
Q 008096          176 YYFVMGAAVLVAVTVLVYIQDNVGWNWGL  204 (577)
Q Consensus       176 ~~~~~~ig~~lg~~i~~~l~~~~gw~~~f  204 (577)
                      ++...++|..++|.+.|.+.+.+||++.|
T Consensus       351 ~~~~~~~g~~~~~~~~g~l~~~~g~~~~f  379 (379)
T TIGR00881       351 VGFFAYLGGILAGLPLGYLADGFGWAGAF  379 (379)
T ss_pred             HHHhhhhhhhhhhhhHHHHHHhhcccccC
Confidence            99999999999999999999999998765

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.03  E-value=6.8e-09  Score=109.83  Aligned_cols=174  Identities=16%  Similarity=0.052  Sum_probs=124.7

Q ss_pred             ehHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhH-hhhhchhhhhhhhhhccchhHHHHHHHHHHHHH
Q 008096           19 MPFIFANEVCEKLAVVGFHANMISYLTTQLHMPLTKAANTLTNFGG-TGSLTPLIGAFVADTYAGRFWTITVASIIYQIG   97 (577)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~lg~s~~~~~~i~~~~~~-~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~i~   97 (577)
                      .+..+...++...+......+.+.|+.+ +|+|.++.+++...... ...++.+++|++.||+ |+|+.+.++.++..+.
T Consensus       210 ~~~~~~~~~l~~~~~~~~~~~~~~~l~~-~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~-g~~~~l~~~~~~~~~~  287 (390)
T TIGR02718       210 AWSLLALALLSAMTAVSGFGLSKLYLVD-AGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRA-GLWRTFILGVGLAGSL  287 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhHHHHh-cCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHH
Confidence            3444445556666666777788889975 79999999999888765 5566789999999998 9999998877665333


Q ss_pred             HHHHHHhhhcCCCCCCCCCCCCcccccccchhHHHHHHHHHHHhccCCcccchhhhhhccCCC-CCchhhhhhhhhhhHH
Q 008096           98 MFSLTLSAILPQLRPPPCQGDQVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDE-TDPKQATKTWKYFNWY  176 (577)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~-~~~~~~~~r~~~~~~~  176 (577)
                      .+......+...                ..+....+....+.+++.+...+...++..+..++ +.      +++.++.+
T Consensus       288 ~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~------~g~~~~~~  345 (390)
T TIGR02718       288 ALLWFAQAAFWL----------------APGIAVAWSCSAFGSLITGITSVAIYTAFMRFAGDGDQ------AGTDVTAV  345 (390)
T ss_pred             HHHHHHHHHccc----------------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccc------hHHHHHHH
Confidence            222221110000                01223334444555667777778888888777765 45      78899999


Q ss_pred             HHHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHHHHH
Q 008096          177 YFVMGAAVLVAVTVLVYIQDNVGWNWGLGIPTVAMFLSII  216 (577)
Q Consensus       177 ~~~~~ig~~lg~~i~~~l~~~~gw~~~f~~~~~~~~~~~~  216 (577)
                      +...++|..+||.++|++.+..||+..|++.+++.+++.+
T Consensus       346 ~~~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~~~~l~a~~  385 (390)
T TIGR02718       346 QSTRDLGELIASSIAGYLTDRFGYAGGFLSGTVLAVLAIL  385 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHH
Confidence            9999999999999999999989999998887766555443

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>TIGR01272 gluP glucose/galactose transporter

Probab=99.02  E-value=4.5e-09  Score=107.70  Aligned_cols=160  Identities=11%  Similarity=0.069  Sum_probs=121.1

Q ss_pred             ehHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCCChHHHHHHHHHHhHhhhhchhhhhhhhhhccchhHHHHHHHHHHHH
Q 008096           19 MPFIFANEVCEKLAVVGFHANMISYLTTQ--LHMPLTKAANTLTNFGGTGSLTPLIGAFVADTYAGRFWTITVASIIYQI   96 (577)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~--lg~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~i   96 (577)
                      .++.....++....-.++..+++.|+.+.  +|++.++.++..+.+..+.+++.++++++.||+ |+|+.+.++.++..+
T Consensus       142 ~~l~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~-g~~~~l~~~~~l~~~  220 (310)
T TIGR01272       142 LVLGALGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMI-SQGRYLAFNAFLAVL  220 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHHH
Confidence            33333333443334457788899999854  799999999999999999999999999999998 999998888877777


Q ss_pred             HHHHHHHhhhcCCCCCCCCCCCCcccccccchhHHHHHHHHHHHhccCCcccchhhhhhccCCCCCchhhhhhhhhhhHH
Q 008096           97 GMFSLTLSAILPQLRPPPCQGDQVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWY  176 (577)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  176 (577)
                      +.++.....                      +.. ...+.++.|++.+..+|...++..+.+|++.       +.+.++.
T Consensus       221 ~~~l~~~~~----------------------~~~-~~~~~~l~g~~~s~i~P~~~s~a~~~~~~~~-------~~asai~  270 (310)
T TIGR01272       221 LSIGAALTH----------------------GYV-AMWFVLALGLFNSIMFPTIFSLALNALGRHT-------SQGSGIL  270 (310)
T ss_pred             HHHHHHHcC----------------------CHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh-------hhhHHHH
Confidence            665444322                      111 2235557899999999999999999888542       2333443


Q ss_pred             HHHHHHHHHHHHHHHHhhcccccchhhhHHHHHH
Q 008096          177 YFVMGAAVLVAVTVLVYIQDNVGWNWGLGIPTVA  210 (577)
Q Consensus       177 ~~~~~ig~~lg~~i~~~l~~~~gw~~~f~~~~~~  210 (577)
                       ....+|+.++|.+.|.+.+..|.+.+|++..++
T Consensus       271 -~~~~~Gg~i~P~l~G~lad~~g~~~a~~v~~~~  303 (310)
T TIGR01272       271 -CLAIVGGAIVPLLQGSLADCLGIQLAFALPVPC  303 (310)
T ss_pred             -HHHHhcchHHHHHHHHHHHhccchHHHHHHHHH
Confidence             456799999999999999988988888765554

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.02  E-value=5e-09  Score=111.07  Aligned_cols=164  Identities=12%  Similarity=0.084  Sum_probs=123.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhc---CCChHHHHHHHHHHhHhhhhchhhhhhhhhhccchhHHHHHHHHHHHHHHHHH
Q 008096           25 NEVCEKLAVVGFHANMISYLTTQL---HMPLTKAANTLTNFGGTGSLTPLIGAFVADTYAGRFWTITVASIIYQIGMFSL  101 (577)
Q Consensus        25 ~~~~~~~~~~~~~~~l~~~l~~~l---g~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~i~~~~~  101 (577)
                      ..++....+......++.|+++.+   +.+....+.+.+...+...++.+..|++.||+ |||+.+.++.++..++..+.
T Consensus       223 ~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~-g~~~~l~~~~~l~~l~~~~~  301 (396)
T TIGR00882       223 YVVGVACVYDVFDQQFANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIINRI-GAKNALLIAGTIMSVRIIGS  301 (396)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccchhHHHHHHHHHHHHHHH
Confidence            333344444445556788887765   55667788888888889999999999999998 99999999988888877766


Q ss_pred             HHhhhcCCCCCCCCCCCCcccccccchhHHHHHHHHHHHhccCCcccchhhhhhccCCCCCchhhhhhhhhhhH-HHHHH
Q 008096          102 TLSAILPQLRPPPCQGDQVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNW-YYFVM  180 (577)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~  180 (577)
                      +++.                      +.+.+++..++.|++..........+..+.++++.      ++...+. ++...
T Consensus       302 ~~~~----------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~at~~~~~~~~~~  353 (396)
T TIGR00882       302 SFAT----------------------TALEVVILKMLHAFEVPFLLVGCFKYITSQFDVRL------SATIYLIGFQFAK  353 (396)
T ss_pred             HhcC----------------------ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcce------EEEeehHHHHHHH
Confidence            6543                      55667778888888866555555556666666544      5665655 56778


Q ss_pred             HHHHHHHHHHHHhhcccccchhhhHHHHHHHHHHHHH
Q 008096          181 GAAVLVAVTVLVYIQDNVGWNWGLGIPTVAMFLSIIA  217 (577)
Q Consensus       181 ~ig~~lg~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~  217 (577)
                      .+|..+++.++|++.+.+||+.+|.+.++..++..+.
T Consensus       354 ~lg~~~~~~l~G~l~~~~G~~~~f~~~~~~~~i~~~~  390 (396)
T TIGR00882       354 QLAMIFLSTLAGNMYDSIGFQGAYLVLGCIVLLFTLI  390 (396)
T ss_pred             HHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999998887776554443

>PRK10054 putative transporter; Provisional

Probab=99.01  E-value=5.4e-09  Score=110.93  Aligned_cols=174  Identities=10%  Similarity=-0.009  Sum_probs=132.2

Q ss_pred             ceehHHHHHHHHHHHHHHHHHHHHHHHHHH--hcCCChHHHHHHHHHHhHhhhhchhhhhhhhhhccchhHHHHHHHHHH
Q 008096           17 ITMPFIFANEVCEKLAVVGFHANMISYLTT--QLHMPLTKAANTLTNFGGTGSLTPLIGAFVADTYAGRFWTITVASIIY   94 (577)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~--~lg~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~   94 (577)
                      |..+......++..+.......+++.|+.+  +.+.+....+.+...........+++.|++.||+ ++|+.+..++++.
T Consensus       206 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~l~~~~~~~  284 (395)
T PRK10054        206 KALLWFTCSGFLASFVSGAFASCISQYVMVVADSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAA-NIRPLMTAGTLCF  284 (395)
T ss_pred             ceehHHHHHHHHHHHHHHHhhhhHHHHHHHhcccchHHHHHHHHHHhhhhheeeehhHHHHHHccC-CchhHHHHHHHHH
Confidence            345555555666555555555566677653  3466777778888888888888888999999998 9999999998888


Q ss_pred             HHHHHHHHHhhhcCCCCCCCCCCCCcccccccchhHHHHHHHHHHHhccCCcccchhhhhhccCCCCCchhhhhhhhhhh
Q 008096           95 QIGMFSLTLSAILPQLRPPPCQGDQVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFN  174 (577)
Q Consensus        95 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  174 (577)
                      .++.....++.                     .+.+.+.+..++.++|.+...|...+++.+..|++.      |+++++
T Consensus       285 ~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~p~~~------~~~~~~  337 (395)
T PRK10054        285 VIGLVGFIFSG---------------------NSLLLWGMSAAVFTVGEIIYAPGEYMLIDHIAPPGM------KASYFS  337 (395)
T ss_pred             HHHHHHHHHcc---------------------hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCccc------ceehHh
Confidence            88777666532                     145566777889999999888999999999999877      788887


Q ss_pred             HHHHHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHHHHHHHH
Q 008096          175 WYYFVMGAAVLVAVTVLVYIQDNVGWNWGLGIPTVAMFLSIIAFV  219 (577)
Q Consensus       175 ~~~~~~~ig~~lg~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~  219 (577)
                      .+. ...+|..+||.++|++.+..|....|++.+....++++..+
T Consensus       338 ~~~-~~~~G~~~Gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~  381 (395)
T PRK10054        338 AQS-LGWLGAAINPLVSGVILTTLPPWSLFVILALAIVAAWLLML  381 (395)
T ss_pred             HHH-HHHHHHHHHHHHHHHHHHHcChhhHHHHHHHHHHHHHHHHH
Confidence            654 56689999999999999999988888776666555555544

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.01  E-value=3e-09  Score=115.73  Aligned_cols=156  Identities=13%  Similarity=0.114  Sum_probs=128.6

Q ss_pred             ceehHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhHhhhhchhhhhhhhhhccchhHHHHHHHHHHHH
Q 008096           17 ITMPFIFANEVCEKLAVVGFHANMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADTYAGRFWTITVASIIYQI   96 (577)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~lg~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~i   96 (577)
                      +.+.......++..+.+++...++|.|+++.+|+|..+.+++.....++..++.++.|++.||+ |||+.+.++.++..+
T Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~~~~g~~~~~~  333 (485)
T TIGR00711       255 RNFTIGCVYMSLLGLGLYGSFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDKI-DPRKLVTIGLILYAV  333 (485)
T ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CcHHHHHHHHHHHHH
Confidence            3444555566777788888889999999999999999999999999999999999999999998 999999999888888


Q ss_pred             HHHHHHHhhhcCCCCCCCCCCCCcccccccchhHHHHHHHHHHHhccCCcccchhhhhhccCCCCCchhhhhhhhhhhHH
Q 008096           97 GMFSLTLSAILPQLRPPPCQGDQVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWY  176 (577)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  176 (577)
                      +..++.+... +                 ..+.+.+....++.|+|.+...+.......+.+|+++      |+.+.+++
T Consensus       334 ~~~~~~~~~~-~-----------------~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~------~g~~~~~~  389 (485)
T TIGR00711       334 GFYWRAFTFT-P-----------------DTPFLAIALPQFIRGFGMGCFFMPLTTIALSGLPPHK------IARGSSLS  389 (485)
T ss_pred             HHHHHhccCC-C-----------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH------HhHHHHHH
Confidence            7776663210 0                 1144556667788999999888888888888888777      99999999


Q ss_pred             HHHHHHHHHHHHHHHHhhccc
Q 008096          177 YFVMGAAVLVAVTVLVYIQDN  197 (577)
Q Consensus       177 ~~~~~ig~~lg~~i~~~l~~~  197 (577)
                      +...++|..+|+.+.+.+.++
T Consensus       390 ~~~~~~g~~ig~~i~g~~~~~  410 (485)
T TIGR00711       390 NFTRQLGGSIGTALITTILTN  410 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999998888654

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.00  E-value=4.6e-09  Score=114.94  Aligned_cols=154  Identities=8%  Similarity=0.008  Sum_probs=129.5

Q ss_pred             ceehHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhHhhhhchhhhhhhhhhccchhHHHHHHHHHHHH
Q 008096           17 ITMPFIFANEVCEKLAVVGFHANMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADTYAGRFWTITVASIIYQI   96 (577)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~lg~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~i   96 (577)
                      |.+.......++....+++...++|.|+++.+|+|..+++.......++..++.++.|++.||+ |+|+.+..+.++..+
T Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~g~~~~~~  337 (495)
T PRK14995        259 RIILSGVVMAMTAMITLVGFELLMAQELQFVHGLSPLEAGMFMLPVMVASGFSGPIAGILVSRL-GLRLVATGGMALSAL  337 (495)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchHHHHHHHHHHHH
Confidence            3445555666777777888889999999999999999999999999999999999999999998 999999989888888


Q ss_pred             HHHHHHHhhhcCCCCCCCCCCCCcccccccchhHHHHHHHHHHHhccCCcccchhhhhhccCCCCCchhhhhhhhhhhHH
Q 008096           97 GMFSLTLSAILPQLRPPPCQGDQVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWY  176 (577)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  176 (577)
                      +.+++.... ..                  .+.+......++.|+|.|...+....++.+..|+++      ++.+.+.+
T Consensus       338 ~~~~l~~~~-~~------------------~~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~------~g~~~~~~  392 (495)
T PRK14995        338 SFYGLAMTD-FS------------------TQQWQAWGLMALLGFSAASALLASTSAIMAAAPPEK------AAAAGAIE  392 (495)
T ss_pred             HHHHHHHhc-CC------------------CchHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCHHh------cchHHHHH
Confidence            777665432 11                  134445667888999999999999999999999887      89999999


Q ss_pred             HHHHHHHHHHHHHHHHhhcc
Q 008096          177 YFVMGAAVLVAVTVLVYIQD  196 (577)
Q Consensus       177 ~~~~~ig~~lg~~i~~~l~~  196 (577)
                      +...++|..+|+.+.+.+.+
T Consensus       393 ~~~~~lG~~~G~ai~g~i~~  412 (495)
T PRK14995        393 TMAYELGAGLGIAIFGLLLS  412 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999888854

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=98.99  E-value=1.5e-08  Score=107.76  Aligned_cols=154  Identities=11%  Similarity=0.198  Sum_probs=108.1

Q ss_pred             HHHHHHHHHhcCCChHHHHHHHHHHh-HhhhhchhhhhhhhhhccchhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCC
Q 008096           38 ANMISYLTTQLHMPLTKAANTLTNFG-GTGSLTPLIGAFVADTYAGRFWTITVASIIYQIGMFSLTLSAILPQLRPPPCQ  116 (577)
Q Consensus        38 ~~l~~~l~~~lg~s~~~~~~i~~~~~-~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  116 (577)
                      .+.+.|+.+++|++.++.+++.+... ++..++.+++|++.||+ |+|+.+.++.++..+..+.+......+.       
T Consensus       230 ~~~~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~-g~~~~l~~~~~~~~l~~l~~~~~~~~~~-------  301 (402)
T PRK11902        230 SLSTTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRL-GLYRSLMLFGVLQAVSNLGYWVLAVTPK-------  301 (402)
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHhcCC-------
Confidence            44556777889999999999987654 45788899999999998 9999888777766655444332210111       


Q ss_pred             CCCcccccccchhHHHHHHH----HHHHhccCCcccchhhhhhccCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 008096          117 GDQVCKEADTGQLAILYASL----LLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAVLVAVTVLV  192 (577)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~----~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~lg~~i~~  192 (577)
                                 +.+.+++..    +..|++.+...+....++.+.+|.++          .++++....+|..+++.++|
T Consensus       302 -----------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~l~~~~~~~~~G  360 (402)
T PRK11902        302 -----------HLWTMALAIGIENLCGGMGTAAFVALLMALCNRSFSATQ----------YALLSALASVGRVYVGPTSG  360 (402)
T ss_pred             -----------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHH----------HHHHHHHHHHHHHHHHHHHH
Confidence                       334444443    34566666667777778887777544          34445555677776677899


Q ss_pred             hhcccccchhhhHHHHHHHHHHHHHHHH
Q 008096          193 YIQDNVGWNWGLGIPTVAMFLSIIAFVF  220 (577)
Q Consensus       193 ~l~~~~gw~~~f~~~~~~~~~~~~~~~~  220 (577)
                      .+.+.+||+..|.+.+++.+++.++...
T Consensus       361 ~l~~~~G~~~~f~~~~~~~~~~~~~~~~  388 (402)
T PRK11902        361 YLVEAYGWPGFYLMTVVIALPGLALLWL  388 (402)
T ss_pred             HHHHHhChHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999888877776555443

>TIGR00895 2A0115 benzoate transport

Probab=98.98  E-value=4e-09  Score=110.92  Aligned_cols=146  Identities=14%  Similarity=0.040  Sum_probs=114.4

Q ss_pred             ehHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhHhhhhchhhhhhhhhhccchhHHHHHHHHHHHHHH
Q 008096           19 MPFIFANEVCEKLAVVGFHANMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADTYAGRFWTITVASIIYQIGM   98 (577)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~lg~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~i~~   98 (577)
                      .+.+.+..++....++....++| ++.+++|++..+.+.+.+...++..++.++.|+++||+ |||+.+.... +..+..
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~-~~~~~~  328 (398)
T TIGR00895       252 TVLLWLLYFMLLVGVYFLTNWLP-KLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADRL-GPRVTALLLL-LGAVFA  328 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-chHHHHHHHH-HHHHHH
Confidence            34444555666677777778887 66678999999999999999999999999999999998 9885544333 333333


Q ss_pred             HHHHHhhhcCCCCCCCCCCCCcccccccchhHHHHHHHHHHHhccCCcccchhhhhhccCCCCCchhhhhhhhhhhHHHH
Q 008096           99 FSLTLSAILPQLRPPPCQGDQVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYF  178 (577)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~  178 (577)
                      .++....                     .+....++..++.|++.+...+...+++.|.+|+++      |++++++.+.
T Consensus       329 ~~~~~~~---------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~g~~~~  381 (398)
T TIGR00895       329 VLVGSTL---------------------FSPTLLLLLGAIAGFFVNGGQSGLYALMALFYPTAI------RATGVGWAIG  381 (398)
T ss_pred             HHHHHHh---------------------hCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHH------HHHHHHHHHH
Confidence            3332211                     134556677788999999999999999999999877      9999999999


Q ss_pred             HHHHHHHHHHHHHHhh
Q 008096          179 VMGAAVLVAVTVLVYI  194 (577)
Q Consensus       179 ~~~ig~~lg~~i~~~l  194 (577)
                      ...+|..+||.+.|++
T Consensus       382 ~~~~g~~~g~~~~G~l  397 (398)
T TIGR00895       382 IGRLGAIIGPILAGYL  397 (398)
T ss_pred             HHHHHHHHHHHhHHhc
Confidence            9999999999998875

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=98.98  E-value=3e-09  Score=114.05  Aligned_cols=161  Identities=16%  Similarity=0.113  Sum_probs=123.6

Q ss_pred             eehHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhHhhhhchhhhhhhhhhccchhHHHHHHHHHHHHH
Q 008096           18 TMPFIFANEVCEKLAVVGFHANMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADTYAGRFWTITVASIIYQIG   97 (577)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~lg~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~i~   97 (577)
                      .++.++...++.....+....+.+.|.+..++ +..+.+++.+...++..++.++.|+++||+ |+|+++.++.++..++
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~-g~~~~~~~~~~~~~~~  300 (437)
T TIGR00792       223 QLLILCLAYLFYNLAFNIKNGVQVYYFTYVLG-DPELFSYMGSIAIVAGLIGVLLFPRLVKKF-GRKILFAGGILLMVLG  300 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHHcchhheeEeeecC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHHH
Confidence            34445556666666666665566666665566 666778888888999999999999999998 9999999998888887


Q ss_pred             HHHHHHhhhcCCCCCCCCCCCCcccccccchhHHHHHHHHHHHhccCCcccchhhhhhccCCCCCch-hhhhhhhhhhHH
Q 008096           98 MFSLTLSAILPQLRPPPCQGDQVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPK-QATKTWKYFNWY  176 (577)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~-~~~~r~~~~~~~  176 (577)
                      .+.+.+..                     .+.+.+++..++.|++.+...+...++++|..+.++.+ .++.++.+++++
T Consensus       301 ~~~~~~~~---------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~  359 (437)
T TIGR00792       301 YLIFFFAG---------------------SNLPLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVR  359 (437)
T ss_pred             HHHHHHcc---------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHH
Confidence            76665532                     14555667778889999999999999999988754321 122368899999


Q ss_pred             HHHHHHHHHHHHHHHHhhcccccch
Q 008096          177 YFVMGAAVLVAVTVLVYIQDNVGWN  201 (577)
Q Consensus       177 ~~~~~ig~~lg~~i~~~l~~~~gw~  201 (577)
                      ++...+|..+++.+.|++.+..||.
T Consensus       360 ~~~~~~g~~lg~~i~g~ll~~~G~~  384 (437)
T TIGR00792       360 TFVRKLGQALAGFLVGLILGIIGYV  384 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            9999999999999999988777764

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>TIGR00896 CynX cyanate transporter

Probab=98.96  E-value=1.3e-08  Score=106.24  Aligned_cols=152  Identities=12%  Similarity=0.032  Sum_probs=116.6

Q ss_pred             ehHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhHhhhhchhhhhhhhhhccchhHHHHHHHHHHHHHH
Q 008096           19 MPFIFANEVCEKLAVVGFHANMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADTYAGRFWTITVASIIYQIGM   98 (577)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~lg~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~i~~   98 (577)
                      .+.+.....+....+++...++|.|+++ +|+|..+.+.+.+.+.++..+++++.|+++||+.+||+.+.++.++..++.
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~~lp~~~~~-~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~  277 (355)
T TIGR00896       199 AWQVTVFFGLQSGLYYSLIGWLPAILIS-HGASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGL  277 (355)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHH
Confidence            3444445555667778888999999975 799999999999999999999999999999998346667777777777777


Q ss_pred             HHHHHhhhcCCCCCCCCCCCCcccccccchhHHHHHHHHHHHhccCCcccchhhhhhccCCCCCchhhhhhhhhhhHHHH
Q 008096           99 FSLTLSAILPQLRPPPCQGDQVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYF  178 (577)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~  178 (577)
                      +.+.+..                      +.... ...++.|++.|...|...+.+.+..++++  +   ++...++.+.
T Consensus       278 ~~~~~~~----------------------~~~~~-~~~~l~g~~~g~~~~~~~~~~~~~~~~~~--~---~g~~~~~~~~  329 (355)
T TIGR00896       278 CGLLFAP----------------------MHGLW-AWALVLGLGQGGAFPLALTLIGLRSRQAA--Q---AAALSAMAQS  329 (355)
T ss_pred             HHHHHhh----------------------hhHHH-HHHHHHHHhhhhHhHHHHHHHHHhccCHH--H---HHHHHHHHHH
Confidence            7666543                      11111 23467899999999988887776555422  1   6778888888


Q ss_pred             HHHHHHHHHHHHHHhhccccc
Q 008096          179 VMGAAVLVAVTVLVYIQDNVG  199 (577)
Q Consensus       179 ~~~ig~~lg~~i~~~l~~~~g  199 (577)
                      ..++|..++|.+.|++.+..|
T Consensus       330 ~~~~~~~~gp~~~G~l~~~~g  350 (355)
T TIGR00896       330 IGYLLAALGPLFVGVLHDISG  350 (355)
T ss_pred             HHHHHHHHHHHHHHHHHHHhc
Confidence            889999999999999988775

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=98.95  E-value=2.3e-07  Score=94.21  Aligned_cols=153  Identities=14%  Similarity=0.141  Sum_probs=105.8

Q ss_pred             HhcCCChHHHHHHHHHHhHhhhhchhhhhhhhhhccchhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCcccccc
Q 008096           46 TQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADTYAGRFWTITVASIIYQIGMFSLTLSAILPQLRPPPCQGDQVCKEAD  125 (577)
Q Consensus        46 ~~lg~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  125 (577)
                      +++|++..|++.+.........+...+.|.++||+ |||+..+..++++.++-+.-- .                     
T Consensus        62 ~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~-Grk~~cl~~cily~~scl~k~-~---------------------  118 (354)
T PF05631_consen   62 ESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRY-GRKKACLLFCILYSLSCLTKH-S---------------------  118 (354)
T ss_pred             HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CchHHHHHHHHHHHHHHHHHh-c---------------------
Confidence            67999999999999999999999999999999999 999999988888877654322 2                     


Q ss_pred             cchhHHHHHHHHHHHhccCCcccchhhhh-hccCCCCCchhhhhhhhhhhHHH-HHHHHHHHHHHHHHHhhcccccc--h
Q 008096          126 TGQLAILYASLLLAALGSGGIRPCVVAFG-ADQFDETDPKQATKTWKYFNWYY-FVMGAAVLVAVTVLVYIQDNVGW--N  201 (577)
Q Consensus       126 ~~~~~~~~~~~~l~g~g~g~~~~~~~~~~-~~~~~~~~~~~~~~r~~~~~~~~-~~~~ig~~lg~~i~~~l~~~~gw--~  201 (577)
                       .++..++++|++.|++.....++--+.. .|+-..+-+++.  .+.-++... ..+.+-++++..++-++.+..+.  .
T Consensus       119 -~~~~~L~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~~~--L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~v  195 (354)
T PF05631_consen  119 -SNYPVLLLGRVLGGIATSLLFSAFESWMVHEHNKRGFPQEW--LSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPV  195 (354)
T ss_pred             -cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHH--HHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCc
Confidence             2688899999999999999888877765 443222111111  222232222 12223334444445555555554  7


Q ss_pred             hhhHHHHHHHHHHHHHHHHcccc
Q 008096          202 WGLGIPTVAMFLSIIAFVFGYPL  224 (577)
Q Consensus       202 ~~f~~~~~~~~~~~~~~~~~~~~  224 (577)
                      .+|..+.++..++.+++....++
T Consensus       196 aPF~~a~~~l~~~~~~I~~~W~E  218 (354)
T PF05631_consen  196 APFDAAIVLLAVAAVLILKTWPE  218 (354)
T ss_pred             chHHHHHHHHHHHHHHHHhcccc
Confidence            78888888777776665554443

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=98.95  E-value=6.5e-09  Score=113.94  Aligned_cols=167  Identities=16%  Similarity=0.088  Sum_probs=109.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHH------------HHHHHhHhhhhchhhhhhhhhhccchhHHHHHHHH
Q 008096           25 NEVCEKLAVVGFHANMISYLTTQLHMPLTKAAN------------TLTNFGGTGSLTPLIGAFVADTYAGRFWTITVASI   92 (577)
Q Consensus        25 ~~~~~~~~~~~~~~~l~~~l~~~lg~s~~~~~~------------i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~   92 (577)
                      ..++..+.+|+...++|.+++ +.|++..+.+.            ......++..++.+++++++||+ |||++++++..
T Consensus       296 ~~~~~~~~~y~~~~~~p~i~~-~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~-gRR~~l~~~~~  373 (502)
T TIGR00887       296 SWFLLDIAFYGVNLNQKVILS-AIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDII-GRKPIQLMGFF  373 (502)
T ss_pred             HHHHHHHHHHccccccHHHHH-HHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-cchhHHHHHHH
Confidence            334456677888888888885 67876543221            12333445566778899999998 99999988887


Q ss_pred             HHHHHHHHHHHhhhcCCCCCCCCCCCCcccccccchhHHHHHHHHHHHhccCCcccchhhhhhccCCCCCchhhhhhhhh
Q 008096           93 IYQIGMFSLTLSAILPQLRPPPCQGDQVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKY  172 (577)
Q Consensus        93 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~  172 (577)
                      +..++..+..+......                  +...+....+...++..+..+....+.+|.+|.+.      |+++
T Consensus       374 ~~~~~~~~l~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~------R~~~  429 (502)
T TIGR00887       374 ILTVLFFVLGFAYNHLS------------------THGFLAIYVLAQFFANFGPNATTFIVPGEVFPTRY------RSTA  429 (502)
T ss_pred             HHHHHHHHHHHHHHhcc------------------hhHHHHHHHHHHHHHhcCCCchhhhhhhccCchhH------HHHH
Confidence            77776666654320000                  11111111111222223345667788899999988      9999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHhhccc----------ccchhhhHHHHHHHHHHHHH
Q 008096          173 FNWYYFVMGAAVLVAVTVLVYIQDN----------VGWNWGLGIPTVAMFLSIIA  217 (577)
Q Consensus       173 ~~~~~~~~~ig~~lg~~i~~~l~~~----------~gw~~~f~~~~~~~~~~~~~  217 (577)
                      .++.+....+|++++|.+.+++.+.          .++...|++.++..+++.+.
T Consensus       430 ~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~  484 (502)
T TIGR00887       430 HGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIFALFMFLGILF  484 (502)
T ss_pred             HHHHHHHhhhHHHHHHHHhhhhhccccccccccccccchHHHHHHHHHHHHHHHH
Confidence            9999999999999999999988763          34455666666655555443

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=98.95  E-value=3.4e-08  Score=103.81  Aligned_cols=137  Identities=15%  Similarity=0.229  Sum_probs=102.5

Q ss_pred             hhhhhhHHHHHHHHHhhhhhhhhccccccCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccc
Q 008096          362 SMSVFTMVSMLSTIALYDRIIIPVARKFTGLDRGITFLHRMGIGFVISVLATLVAGFVEMKRKQAALAHGLVDKPHIIIP  441 (577)
Q Consensus       362 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ig~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  441 (577)
                      .....+..+-++.=+..    .++.+|+++-+.       +..|+.+.++-++.+...+                     
T Consensus       410 v~~a~~~~gEI~~~ffs----~klI~kiGHv~v-------~~lgLa~~~~Rf~~~S~L~---------------------  457 (618)
T KOG3762|consen  410 VVSALCHAGEILFYFFS----FKLIEKIGHVNV-------MYLGLACNVGRFLYYSYLQ---------------------  457 (618)
T ss_pred             ehhhhhccchHHHHHHH----HHHHHHhcccce-------eeehhhHHHHHHHHHHHhc---------------------
Confidence            44445555545444443    357777776655       8889998888888888877                     


Q ss_pred             chhhHHHHHHHHHHHHHHHHhhhhhhhhhcccCcccHHHHHHHHH-HHHhHHHHHHHHHHHHHhhhcCCCCCCCCCCCCC
Q 008096          442 ISVLWLVPQYSLHGIAEAFMSVGHLEFLYDQAPESMRSTATALFW-TANSIGNYVSTLLVTLVHKFSAGPNGSNWLPDNN  520 (577)
Q Consensus       442 ~~~~~l~~~~~l~gi~~~~~~~~~~~~v~~~~P~~~rg~~~gi~~-~~~~lg~~l~~~i~~~v~~~~~~~~~~~~~~~~~  520 (577)
                       ++|.+++.-++.++..+.+..+.-+|+...+|++.|.+++|+.. ...++|-.+|.++.|.+....+.           
T Consensus       458 -n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg~-----------  525 (618)
T KOG3762|consen  458 -NPWMVLPIEILQGITHALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFGA-----------  525 (618)
T ss_pred             -CchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheeehh-----------
Confidence             88888999999999999999999999999999999999999997 56888889999888887554322           


Q ss_pred             CCcchhhHHHHHHHHHHHHHHHHHhhhh
Q 008096          521 LNKGKLEYFYWLITLLQVVNVIYYFFCA  548 (577)
Q Consensus       521 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~  548 (577)
                            ...|..+++.+++.++++....
T Consensus       526 ------~ttf~~~giAcl~~l~~~~~iq  547 (618)
T KOG3762|consen  526 ------RTTFRIFGIACLVTLALFISIQ  547 (618)
T ss_pred             ------HHHHHHHHHHHHHHHHHHHHhh
Confidence                  3346666665555555555443

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=98.95  E-value=1.4e-08  Score=110.06  Aligned_cols=177  Identities=15%  Similarity=-0.010  Sum_probs=121.4

Q ss_pred             ceehHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhHhhhhchhhhhhhhhhccchhHH--------HH
Q 008096           17 ITMPFIFANEVCEKLAVVGFHANMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADTYAGRFWT--------IT   88 (577)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~lg~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grk~~--------~~   88 (577)
                      +.++.+....++....++.+..++|.|+.+.+|++..+.++..+...++..++.+++|+++||+ ++|+.        +.
T Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~-~~~~~~~~~~~~~~~  339 (465)
T TIGR00894       261 LPVWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFL-KSSKTLSLTAARKIF  339 (465)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCCcHHHHHHHH
Confidence            3456666778888888999999999999999999999999999999999999999999999997 54421        11


Q ss_pred             HHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCcccccccchhHHHHHHHHHHHhccCCcccchhhhhhccCCCCCchhhhh
Q 008096           89 VASIIYQIGMFSLTLSAILPQLRPPPCQGDQVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATK  168 (577)
Q Consensus        89 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~  168 (577)
                      .+......+..++.... ..                  .+....++...+.+.+.++..+.......|..|. .      
T Consensus       340 ~~~~~~~~~~~~~~~~~-~~------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~------  393 (465)
T TIGR00894       340 NGIGGLGPGIFAYALPY-LS------------------AAFYLTIIILTLANAVSSGPLAGVLINSLDLAPR-F------  393 (465)
T ss_pred             HHHHHHHHHHHHHHHHH-cC------------------CchHHHHHHHHHHHHHhhhhhhhhhhchhhcChh-H------
Confidence            11111111111111111 00                  1233334444555555555555555555565553 3      


Q ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHhhcccc---cchhhhHHHHHHHHHHHHHHHH
Q 008096          169 TWKYFNWYYFVMGAAVLVAVTVLVYIQDNV---GWNWGLGIPTVAMFLSIIAFVF  220 (577)
Q Consensus       169 r~~~~~~~~~~~~ig~~lg~~i~~~l~~~~---gw~~~f~~~~~~~~~~~~~~~~  220 (577)
                      ++.+.++.+...++|..++|.+.|++.+..   +|+..|.+.++..+++.++...
T Consensus       394 ~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~  448 (465)
T TIGR00894       394 LGFIKGITGLPGFIGGLIASTLAGNILSQDSKNVWLIVFLIMAFVNILCVIFYLI  448 (465)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhheeeCCCCchHHHHHHHHHHHHHHHHHHHeee
Confidence            899999999999999999999999887643   3888888877776666555443

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=98.95  E-value=3.1e-08  Score=105.11  Aligned_cols=164  Identities=12%  Similarity=0.075  Sum_probs=118.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhHhhhhchhhhhhhhhhccchhHHHHHHHHHHHHHHH
Q 008096           20 PFIFANEVCEKLAVVGFHANMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADTYAGRFWTITVASIIYQIGMF   99 (577)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~lg~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~i~~~   99 (577)
                      +..+...++.....++...++++++.+++|++..+.+.+...+.++..++.++.|++.||. +++ .+..+.++..+..+
T Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~-~~~-~l~~~~~~~~~~~~  296 (394)
T PRK10213        219 MAGMIAIFMSFAGQFAFFTYIRPVYMNLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRS-VKL-ALAGAPLVLAVSAL  296 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhcc-chh-HHHHHHHHHHHHHH
Confidence            3333344444455566666765555578899999999999999999999999999999995 544 44444444333333


Q ss_pred             HHHHhhhcCCCCCCCCCCCCcccccccchhHHHHHHHHHHHhccCCcccchhhhhhccCCCCCchhhhhhhhhhhHHHHH
Q 008096          100 SLTLSAILPQLRPPPCQGDQVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFV  179 (577)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  179 (577)
                      .+....                     .+.+.+.+..++.|++.+...+..++++.+..|+ +      +++..+.++..
T Consensus       297 ~l~~~~---------------------~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~-~------~~~~~~~~~~~  348 (394)
T PRK10213        297 VLTLWG---------------------SDKIVATGVAIIWGLTFALVPVGWSTWITRSLAD-Q------AEKAGSIQVAV  348 (394)
T ss_pred             HHHHHh---------------------hhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHCcc-c------HHHHHHHHHHH
Confidence            332221                     1456677788889999999999999999988874 3      34556666777


Q ss_pred             HHHHHHHHHHHHHhhcccccchhhhHHHHHHHHH
Q 008096          180 MGAAVLVAVTVLVYIQDNVGWNWGLGIPTVAMFL  213 (577)
Q Consensus       180 ~~ig~~lg~~i~~~l~~~~gw~~~f~~~~~~~~~  213 (577)
                      .++|..+|+.++|++.+..|++..++..+...++
T Consensus       349 ~~lg~~~G~~l~G~l~~~~g~~~~~~~~~~~~~~  382 (394)
T PRK10213        349 IQLANTCGAAIGGYALDNIGLTSPLMLSGTLMLL  382 (394)
T ss_pred             HHHHHHHHHHHHHHHHhccChhhHHHHHHHHHHH
Confidence            7899999999999999989988888777655433

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=98.92  E-value=3.5e-08  Score=103.56  Aligned_cols=159  Identities=11%  Similarity=0.119  Sum_probs=116.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhHhhhhchhhhhhhhhhccchhHHHHHHHHHHHHHHHH
Q 008096           21 FIFANEVCEKLAVVGFHANMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADTYAGRFWTITVASIIYQIGMFS  100 (577)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~l~~~l~~~lg~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~i~~~~  100 (577)
                      .......+....++....+.|.|+++++|++..+.+++.....++..++.++.|++.||+ |||+.+..+..+..++..+
T Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~-~~~~~~~~~~~~~~~~~~~  288 (385)
T TIGR00710       210 GYALIYGASFGGFFAFFSGAPFVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKW-GAKSLLRMGLILFAVSAVL  288 (385)
T ss_pred             HHHHHHHHHHHHHHHHHHcChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHH
Confidence            333344455556677777889999999999999999999999999999999999999998 9999999888887777776


Q ss_pred             HHHhhhcCCCCCCCCCCCCcccccccchhHHHHHHHHHHHhccCCcccchhhhhhccCCCCCchhhhhhhhhhhHHHHHH
Q 008096          101 LTLSAILPQLRPPPCQGDQVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVM  180 (577)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~  180 (577)
                      +.+....+                 ......+++..++.|++.+...+...+...|.+| ++      |+++.++++...
T Consensus       289 ~~~~~~~~-----------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~------~g~~~~~~~~~~  344 (385)
T TIGR00710       289 LEITAILG-----------------LGSWAMIIGPMMFVGIGNSMISSIAMAYALEDFP-HV------AGTASALFGTLR  344 (385)
T ss_pred             HHHHHHhc-----------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-cc------chHHHHHHHHHH
Confidence            66543111                 0134445566777889999988999998888876 34      788888877776


Q ss_pred             HH-HHHHHHHHHHhhcccccchhhhH
Q 008096          181 GA-AVLVAVTVLVYIQDNVGWNWGLG  205 (577)
Q Consensus       181 ~i-g~~lg~~i~~~l~~~~gw~~~f~  205 (577)
                      .. |.+.++ +.+.+.++.+|...+.
T Consensus       345 ~~~g~i~~~-~~~~~~~~~~~~~~~~  369 (385)
T TIGR00710       345 LVLGAIVGY-LVSLIHGNTAWPMSLS  369 (385)
T ss_pred             HHHHHHHHH-HHHhccccChHHHHHH
Confidence            54 555555 4555555545544433

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PRK10133 L-fucose transporter; Provisional

Probab=98.92  E-value=2.2e-08  Score=107.79  Aligned_cols=164  Identities=13%  Similarity=0.101  Sum_probs=123.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-HHhcCCChHHHHHHHHHHhHhhhhchhhhhhhhhhccchhHHHHHHHHHHHHHHH
Q 008096           21 FIFANEVCEKLAVVGFHANMISYL-TTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADTYAGRFWTITVASIIYQIGMF   99 (577)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~l~~~l-~~~lg~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~i~~~   99 (577)
                      ......++.....++...+++.|+ ++.+|+|+.++++....+.++..++.+++|++.||+ |+|+++..+.++..++..
T Consensus       262 ~~~l~~~~~~~~~~~~~~~~~~~l~~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~-g~~~~l~~~~~~~~~~~~  340 (438)
T PRK10133        262 WAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRF-APHKVLAAYALIAMALCL  340 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CHHHHHHHHHHHHHHHHH
Confidence            334444555566666778888895 667899999999999999999999999999999998 999999888777666555


Q ss_pred             HHHHhhhcCCCCCCCCCCCCcccccccchhHHHHHHHHHHHhccCCcccchhhhhhccCCCCCchhhhhhhhhhhHHHHH
Q 008096          100 SLTLSAILPQLRPPPCQGDQVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFV  179 (577)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  179 (577)
                      +..+..                      +. ..+....+.|++.+...|...+...+.+|++.       +.+.++..+ 
T Consensus       341 ~~~~~~----------------------~~-~~~~~~~l~glg~~~i~P~~~s~a~~~~~~~~-------~~as~l~~~-  389 (438)
T PRK10133        341 ISAFAG----------------------GH-VGLIALTLCSAFMSIQYPTIFSLGIKNLGQDT-------KYGSSFIVM-  389 (438)
T ss_pred             HHHHcC----------------------Ch-HHHHHHHHHHHHHHHHHHHHHHHHHcccchhh-------ccchhHHhH-
Confidence            544432                      11 22456678899999999999999999887532       334444433 


Q ss_pred             HHHHHHHHHHHHHhhccccc-chhhhHHHHHHHHHHHH
Q 008096          180 MGAAVLVAVTVLVYIQDNVG-WNWGLGIPTVAMFLSII  216 (577)
Q Consensus       180 ~~ig~~lg~~i~~~l~~~~g-w~~~f~~~~~~~~~~~~  216 (577)
                      ..+|+.++|.+.|.+.+..| -+..|++..++.+...+
T Consensus       390 ~~~g~~~~~~i~G~l~~~~g~~~~~~~v~~~~~~~~~~  427 (438)
T PRK10133        390 TIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFI  427 (438)
T ss_pred             HhccchHHHHHHHHHHHhccchHHHHHHHHHHHHHHHH
Confidence            34678888899999988887 78888776665544333

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=98.91  E-value=1.6e-08  Score=122.00  Aligned_cols=161  Identities=11%  Similarity=0.032  Sum_probs=129.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChH-HHHHHHHHHhHhhhhchhhhhhhhhhccchhHHHHHHHHHHHHHH
Q 008096           20 PFIFANEVCEKLAVVGFHANMISYLTTQLHMPLT-KAANTLTNFGGTGSLTPLIGAFVADTYAGRFWTITVASIIYQIGM   98 (577)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~lg~s~~-~~~~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~i~~   98 (577)
                      +..+...++.....+....+++.|+.+.+|++.. +.+++.+...++..++.++.|+++||+ ++++.+.++.++.+++.
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~-~~~~~~~~~~~~~~~~~  313 (1146)
T PRK08633        235 WLAIIGLSYFWFISQLAQANFPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRH-IELGLVPLGALGLALSL  313 (1146)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCc-eEccchhHHHHHHHHHH
Confidence            3333344445555667778899999999999999 999999999999999999999999998 99998888888887777


Q ss_pred             HHHHHhhhcCCCCCCCCCCCCcccccccchhHHHHHHHHHHHhccCCcccchhhhhhccCCCCCchhhhhhhhhhhHHHH
Q 008096           99 FSLTLSAILPQLRPPPCQGDQVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYF  178 (577)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~  178 (577)
                      +++.+..                      +.+.+++..++.|++.++..+...+++.+.+|++.      |++++++.++
T Consensus       314 ~~~~~~~----------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------rg~~~~~~~~  365 (1146)
T PRK08633        314 FLLPTAP----------------------SLASVLVLFFLFGFSAGLFIVPLNALIQFRAPEKE------LGKVLAANNF  365 (1146)
T ss_pred             HHHHHhh----------------------hHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCccc------hhhhhHHHHH
Confidence            7776544                      56667788888999999999999999999999888      9999999999


Q ss_pred             HHHHHHHHHHHHHHhhcc-cccchhhhHHHHH
Q 008096          179 VMGAAVLVAVTVLVYIQD-NVGWNWGLGIPTV  209 (577)
Q Consensus       179 ~~~ig~~lg~~i~~~l~~-~~gw~~~f~~~~~  209 (577)
                      ..++|.++++.+++.+.. .+++...|++.+.
T Consensus       366 ~~~lg~~~~~~~~~~l~~~~~~~~~~~~~~~~  397 (1146)
T PRK08633        366 LQNVGMLLFLALTTLFSGLGLSPAGLFYLIAL  397 (1146)
T ss_pred             HHHHHHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence            999999888877776643 2344445554443

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=98.90  E-value=2.3e-08  Score=106.31  Aligned_cols=153  Identities=9%  Similarity=-0.004  Sum_probs=113.1

Q ss_pred             HHHHHHHHHHHHhcCCChHHHHHHHHHHhHhhhhchhhhhhhhhhccchhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCC
Q 008096           35 GFHANMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADTYAGRFWTITVASIIYQIGMFSLTLSAILPQLRPPP  114 (577)
Q Consensus        35 ~~~~~l~~~l~~~lg~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  114 (577)
                      ....++|.|+++..+ ++.+.+++.+...++...+..+.+++.||.++.++.+..+.++..++..+++++.         
T Consensus       226 ~~~~~~p~~~~~~~~-~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~---------  295 (400)
T PRK11646        226 QVMLMLPIMVNDIAG-SPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMVS---------  295 (400)
T ss_pred             HHHHhhhhhHHhhcC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhh---------
Confidence            345678888877655 7788888888877766665566666666533667777778877777777666554         


Q ss_pred             CCCCCcccccccchhHHHHHHHHHHHhccCCcccchhhhhhccCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHHHHHhh
Q 008096          115 CQGDQVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAVLVAVTVLVYI  194 (577)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~lg~~i~~~l  194 (577)
                                   +.+.+.+...+.+++.+...|...+++.|..|+++      |++++++++...++|..+||.++|++
T Consensus       296 -------------~~~~~~~~~~l~~~g~~~~~p~~~~~~~~~~p~~~------~g~~~g~~~~~~~~g~~ig~~l~G~l  356 (400)
T PRK11646        296 -------------NLQQLFTLICLFYIGSIIAEPARETLSASLADARA------RGSYMGFSRLGLALGGAIGYIGGGWL  356 (400)
T ss_pred             -------------hHHHHHHHHHHHHHHHHHHHccHHHHHHhcCCccc------chhhhhHHHHHHHHHHHhcccchHHH
Confidence                         45556666777888888888999999999999888      99999999999999999999999999


Q ss_pred             cccc---c-chhhhHHHHHHHHHHHH
Q 008096          195 QDNV---G-WNWGLGIPTVAMFLSII  216 (577)
Q Consensus       195 ~~~~---g-w~~~f~~~~~~~~~~~~  216 (577)
                      .+..   + ....++...+..++..+
T Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~~~  382 (400)
T PRK11646        357 FDLGKALNQPELPWMMLGIIGLITLL  382 (400)
T ss_pred             HHHHhhcCCcchHHHHHHHHHHHHHH
Confidence            8763   2 23444444444444433

>PRK09848 glucuronide transporter; Provisional

Probab=98.88  E-value=8.9e-09  Score=111.14  Aligned_cols=162  Identities=12%  Similarity=0.129  Sum_probs=124.2

Q ss_pred             eehHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhHhhhhchhhhhhhhhhccchhHHHHHHHHHHHHH
Q 008096           18 TMPFIFANEVCEKLAVVGFHANMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADTYAGRFWTITVASIIYQIG   97 (577)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~lg~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~i~   97 (577)
                      .+.......++....++......+.|+++.+|.+....++......++..++.++.++++||+ |+|+++.++.++..++
T Consensus       229 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~-g~~~~~~~g~~~~~i~  307 (448)
T PRK09848        229 PLFMLCIGALCVLISTFAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARI-GKKNTFLIGALLGTCG  307 (448)
T ss_pred             hHHHHHHHHHHHHHHHHHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHHH
Confidence            344445556666666677777778888888998877666666555677788999999999998 9999999999888888


Q ss_pred             HHHHHHhhhcCCCCCCCCCCCCcccccccchhHHHHHHHHHHHhccCCcccchhhhhhccCCCCCchh-hhhhhhhhhHH
Q 008096           98 MFSLTLSAILPQLRPPPCQGDQVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQ-ATKTWKYFNWY  176 (577)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~-~~~r~~~~~~~  176 (577)
                      .+.+.+..                    ..+.+.+++..++.|+|.+...+...++.+|..|.++.+. ++.++..++.+
T Consensus       308 ~~~~~~~~--------------------~~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~  367 (448)
T PRK09848        308 YLLFFWVS--------------------VWSLPVALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLF  367 (448)
T ss_pred             HHHHHHcC--------------------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHH
Confidence            77666532                    1245666777888999999999999999999988654322 22258888999


Q ss_pred             HHHHHHHHHHHHHHHHhhcccccc
Q 008096          177 YFVMGAAVLVAVTVLVYIQDNVGW  200 (577)
Q Consensus       177 ~~~~~ig~~lg~~i~~~l~~~~gw  200 (577)
                      +....+|..+|+.+.+.+.+..||
T Consensus       368 ~~~~klg~aig~~i~g~~l~~~G~  391 (448)
T PRK09848        368 SFTRKCGQAIGGSIPAFILGLSGY  391 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCC
Confidence            999999999999998887655555

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=98.88  E-value=2e-08  Score=121.06  Aligned_cols=182  Identities=9%  Similarity=-0.016  Sum_probs=131.6

Q ss_pred             eehHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhHhhhhchhhhhhhhhhccchhHHHHHHHHHHHHH
Q 008096           18 TMPFIFANEVCEKLAVVGFHANMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADTYAGRFWTITVASIIYQIG   97 (577)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~lg~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~i~   97 (577)
                      .++..+...++..+..+++..++|.|+++.+|.+..+.+++.+.+.++..++.++.|+++|++ ++++.+..+.++..++
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~-~~~~~~~~~~~~~~~~  304 (1140)
T PRK06814        226 RIWLAILGISWFWLVGAVVLSQLPLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGR-ITLLYVPIGALLMGLF  304 (1140)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCc-eeeeeehHHHHHHHHH
Confidence            444455555666666778888999999999999999999999999999999999999999987 7777666666665555


Q ss_pred             HHHHHHhhhcCCCCCCCCCCCCccc-ccccchhHHHHHHHHHHHhccCCcccchhhhhhccCCCCCchhhhhhhhhhhHH
Q 008096           98 MFSLTLSAILPQLRPPPCQGDQVCK-EADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWY  176 (577)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  176 (577)
                      .+.+++.. ... ..+.-+- .... .....+.+.+++..++.|++.+...+...+++.+.+|++.      |+++++.+
T Consensus       305 ~~~l~~~~-~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~G~v~g~~  375 (1140)
T PRK06814        305 GLDLAFAS-SSV-PAEPAQL-KSILVFLSKRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAH------RARVIAAN  375 (1140)
T ss_pred             HHHHHhcc-ccc-ccccccc-cchhhhhcccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCccc------ceeeeHHH
Confidence            55444420 000 0000000 0000 0001245667788888999999999999999999999988      99999999


Q ss_pred             HHHHHHHHHHHHHHHHhhcc-cccchhhhHHHHH
Q 008096          177 YFVMGAAVLVAVTVLVYIQD-NVGWNWGLGIPTV  209 (577)
Q Consensus       177 ~~~~~ig~~lg~~i~~~l~~-~~gw~~~f~~~~~  209 (577)
                      +....+|..+++++.+.+.. ..++...+++.++
T Consensus       376 ~~~~~~~~~ig~~~~g~l~~~~~~~~~~~~~~~~  409 (1140)
T PRK06814        376 NVLNAAFMVAGTIILALLQALGFSIPWIILFIAL  409 (1140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence            99999999999999888863 3455655554444

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=98.86  E-value=7.8e-08  Score=102.86  Aligned_cols=184  Identities=14%  Similarity=0.089  Sum_probs=126.6

Q ss_pred             ehHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhHhhhhchhhhhhhhhhccchhHHHHHHHHHHHHHH
Q 008096           19 MPFIFANEVCEKLAVVGFHANMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADTYAGRFWTITVASIIYQIGM   98 (577)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~lg~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~i~~   98 (577)
                      .|++....++..-++.++..++|.|+++.+  +............+...+..+++|+++||+ |++|++.++.+...++.
T Consensus       254 ~Wllslly~~tFG~fvg~s~~lp~~~~~~~--~~~~~l~~~~l~~l~~~l~rplgG~LADRi-G~~~vl~~~~i~~~i~~  330 (462)
T PRK15034        254 LWLLSLLYLATFGSFIGFSAGFAMLAKTQF--PDVNILRLAFFGPFIGAIARSVGGAISDKF-GGVRVTLINFIFMAIFS  330 (462)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHc--ChHHHHHHHHHHHHHHHHHHHhhHHHHHhc-CchHHHHHHHHHHHHHH
Confidence            455555666665566667778999998866  344444445556788899999999999998 99999998888777766


Q ss_pred             HHHHHhhhcCCCCCCCCCCCCcccccccchhHHHHHHHHHHHhccCCcccchhhhhhccCCCCCc---------------
Q 008096           99 FSLTLSAILPQLRPPPCQGDQVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDP---------------  163 (577)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~---------------  163 (577)
                      .......  |.              ....+.+.+.+..+...++.|.-+.+...++.+.||+++.               
T Consensus       331 ~~~~l~l--p~--------------~~~~~~~~~~~~~~~l~~~~G~gngsvfk~ip~~f~~~~~~~~~~~~~~~~~~~~  394 (462)
T PRK15034        331 ALLFLTL--PG--------------TGSGNFIAFYAVFMGLFLTAGLGSGSTFQMIAVIFRQITIYRVKMKGGSDEQAQR  394 (462)
T ss_pred             HHHHHHh--cc--------------ccccHHHHHHHHHHHHHHHhcccchHHHHhhHHHHhhhhhhcccccccchhHHhh
Confidence            5443322  21              0113566666766666777777778888888888874111               


Q ss_pred             hhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhccccc-chhhhHHHHHHHHHHHHHHHHc
Q 008096          164 KQATKTWKYFNWYYFVMGAAVLVAVTVLVYIQDNVG-WNWGLGIPTVAMFLSIIAFVFG  221 (577)
Q Consensus       164 ~~~~~r~~~~~~~~~~~~ig~~lg~~i~~~l~~~~g-w~~~f~~~~~~~~~~~~~~~~~  221 (577)
                      +.+++-+...|+......+|+.+-|.+.|...+..| +...|+...+..++...+.+..
T Consensus       395 ~~~~~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~w~~  453 (462)
T PRK15034        395 EAVTETAAALGFISAIGAVGGFFIPQAFGMSLNMTGSPVGAMKVFLIFYIVCVLLTWLV  453 (462)
T ss_pred             HHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHH
Confidence            011235678888888889999999988887766554 7778887777665555554433

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=98.86  E-value=8.8e-08  Score=101.61  Aligned_cols=160  Identities=11%  Similarity=0.004  Sum_probs=120.4

Q ss_pred             HHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhHhhhhchhhhhhhhhhccchhHHHHHHHHHHHHHHHHHHHhhhcCC
Q 008096           30 KLAVVGFHANMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADTYAGRFWTITVASIIYQIGMFSLTLSAILPQ  109 (577)
Q Consensus        30 ~~~~~~~~~~l~~~l~~~lg~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~  109 (577)
                      ..........++.|+++.+|.|..+.+++.+...++..+++++.+++.||+ ++++.+..+.+ ..+..+.+++..    
T Consensus       218 ~~~~~~~~~~~~~~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~-~~~~~~~~g~~-~~~~~~~~~~~~----  291 (393)
T PRK11195        218 WGAGATLRFLVLAWAPVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLE-TVLRVLPAGIL-MGLVVLLMALQH----  291 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCC-cccchHHHHHH-HHHHHHHHHHHh----
Confidence            344455566778889999999999999999999999999999999999998 98888877753 333333334332    


Q ss_pred             CCCCCCCCCCcccccccchhHHHHHHHHHHHhccCCcccchhhhhhccCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHH
Q 008096          110 LRPPPCQGDQVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAVLVAVT  189 (577)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~lg~~  189 (577)
                                        +.+...+..++.|++.+...+...+.+.+..|++.     +++++.++.+...++|..++..
T Consensus       292 ------------------~~~~~~~~~~~~G~~~g~~~~~~~~~~q~~~~~~~-----~~g~~~a~~~~~~~~~~~~~~~  348 (393)
T PRK11195        292 ------------------SLLPAYPLLILIGALGGFFVVPMNALLQHRGHVLV-----GAGHSIAVQNFNENLAMLLMLG  348 (393)
T ss_pred             ------------------HHHHHHHHHHHHHHhhhhhhhhHHHHHHhhCcccc-----cchhHHHHHhHHHHHHHHHHHH
Confidence                              45556677778899999988888888887544321     1688899999999999999998


Q ss_pred             HHHhhcccccchhhhHHHHHHHHHHHHHHH
Q 008096          190 VLVYIQDNVGWNWGLGIPTVAMFLSIIAFV  219 (577)
Q Consensus       190 i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~  219 (577)
                      +.+.+ +..|-+..+++.....++.+....
T Consensus       349 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  377 (393)
T PRK11195        349 LYSLL-VKLGVPVVAVIVGFGLLVALAMAL  377 (393)
T ss_pred             HHHHH-HHcCCCHHHHHHHHHHHHHHHHHH
Confidence            88866 467777777776665555444433

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=98.84  E-value=1.3e-07  Score=95.39  Aligned_cols=173  Identities=14%  Similarity=0.062  Sum_probs=135.4

Q ss_pred             CCCccee--hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhHhhhhchhhhhhhhhhccchhHHHHHH
Q 008096           13 KGGIITM--PFIFANEVCEKLAVVGFHANMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADTYAGRFWTITVA   90 (577)
Q Consensus        13 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~l~~~lg~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~   90 (577)
                      ++-||+-  |.+..-....++.+|..+.++|.++. +.|+|..++|+..+..++......+..-.+++|...+|+..+..
T Consensus       202 ~~vw~~~~aW~vtLfmGlqS~~~Y~~~~WLP~ili-~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~  280 (395)
T COG2807         202 RKVWRSPLAWQVTLFMGLQSLLYYIVIGWLPAILI-DRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLA  280 (395)
T ss_pred             cccccCchhHHHHHHHHhhHHHHHHHHHHHHHHHH-HcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHH
Confidence            4456654  55555566688999999999999997 66999999999999999999999999999999887889999999


Q ss_pred             HHHHHHHHHHHHHhhhcCCCCCCCCCCCCcccccccchhHHHHHHHHHHHhccCCcccchhhhhhccCCCCCchhhhhhh
Q 008096           91 SIIYQIGMFSLTLSAILPQLRPPPCQGDQVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTW  170 (577)
Q Consensus        91 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~  170 (577)
                      +..+.+|.+.+.+..                       ....+...+++|+|.|+.+|.+.+++.+..++.+  +   -+
T Consensus       281 ~~~~l~G~~G~~~~P-----------------------~~~~~lw~~llG~G~G~~F~laL~li~~rs~~a~--~---Aa  332 (395)
T COG2807         281 LLLMLVGLVGLLLAP-----------------------GQLPILWALLLGLGQGGAFPLALTLILLRSSDAA--I---AA  332 (395)
T ss_pred             HHHHHHHHHHHHHhh-----------------------hhHHHHHHHHHhCccchHHHHHHHHHHhhcCChH--H---HH
Confidence            999999999998764                       1123333588999999999999999999877543  1   34


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHhhccccc-chhhhHHHHHHHHHH
Q 008096          171 KYFNWYYFVMGAAVLVAVTVLVYIQDNVG-WNWGLGIPTVAMFLS  214 (577)
Q Consensus       171 ~~~~~~~~~~~ig~~lg~~i~~~l~~~~g-w~~~f~~~~~~~~~~  214 (577)
                      +..+.-+....+=+.+||++.|++.|..| |+.+....+...++.
T Consensus       333 ~LSgmaQg~GYllAa~GP~l~G~lhDa~gsw~~~~~~l~~~~i~m  377 (395)
T COG2807         333 ALSGMAQGVGYLLAAFGPWLFGFLHDATGSWSAPLVLLALATLLM  377 (395)
T ss_pred             HHHHHhhhhhHHHHhhhhhhHhHHHHhcCChHHHHHHHHHHHHHH
Confidence            44555555566667889999999988764 887766555544433

>TIGR00901 2A0125 AmpG-related permease

Probab=98.84  E-value=2.6e-08  Score=103.84  Aligned_cols=144  Identities=14%  Similarity=0.065  Sum_probs=111.3

Q ss_pred             ehHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHh-HhhhhchhhhhhhhhhccchhHHHHHHHHHHHHH
Q 008096           19 MPFIFANEVCEKLAVVGFHANMISYLTTQLHMPLTKAANTLTNFG-GTGSLTPLIGAFVADTYAGRFWTITVASIIYQIG   97 (577)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~lg~s~~~~~~i~~~~~-~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~i~   97 (577)
                      .+.+....++..+.++....+++.|+++ +|++..+.+.+..... +...++.+++|+++||+ |||+.+..++++..++
T Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~-g~~~~l~~~~~~~~~~  288 (356)
T TIGR00901       211 ALLLLLLIVLYKLGDSAATVLTTLFLLD-MGFSKEEIALVAKINGLLGAILGGLIGGIIMQPL-NILYALLLFGIVQALT  288 (356)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHH
Confidence            4555556666788888899999999987 9999999998888766 56788999999999998 9999999888887776


Q ss_pred             HHHHHHhhhcCCCCCCCCCCCCcccccccchhHHHHHHHHHHHhccCCcccchhhhhhccCCCCCchhhhhhhhhhhHHH
Q 008096           98 MFSLTLSAILPQLRPPPCQGDQVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYY  177 (577)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~  177 (577)
                      ..+..+..+..+.           ......+.+.+....++.+++.+...+...+++.|.+|+++      |++.+++++
T Consensus       289 ~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~  351 (356)
T TIGR00901       289 NAGFVWLASNGHH-----------DGITFPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKF------GATQMALLS  351 (356)
T ss_pred             HHHHHHHHhcCcc-----------cccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCc------cHHHHHHHH
Confidence            6655543211000           00000145667777888999999999999999999999998      999999987


Q ss_pred             HHHH
Q 008096          178 FVMG  181 (577)
Q Consensus       178 ~~~~  181 (577)
                      ...+
T Consensus       352 ~~~~  355 (356)
T TIGR00901       352 SLSA  355 (356)
T ss_pred             HHHh
Confidence            7654

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=98.82  E-value=1.1e-07  Score=99.89  Aligned_cols=166  Identities=11%  Similarity=-0.047  Sum_probs=113.2

Q ss_pred             ceehHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhHhhhhchhhhhhhhhhccch---hHHHHH-HHH
Q 008096           17 ITMPFIFANEVCEKLAVVGFHANMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADTYAGR---FWTITV-ASI   92 (577)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~lg~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr---k~~~~~-~~~   92 (577)
                      +..+.+....++....+|++..++|.|+++ .|+|.. .+.......+.+.++   .++++||. .|   |+.... ..+
T Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~wlp~~L~~-~g~s~~-~~~~~~l~~~~g~~g---~~~~~d~~-~r~~~r~~~~~~~~~  265 (368)
T TIGR00903       192 KDLWIIGAILGFGVALFDNLAIWLEAALRP-AGLEDI-AGDAVALAILAGLIG---VAVIPDRV-ARAGLRSIYIRAAAL  265 (368)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCChH-HHHHHHHHHHHHHHH---HHHhhHHh-hhhhhHHHHHHHHHH
Confidence            445666678888999999999999999964 678865 566655555555544   47777775 43   333332 333


Q ss_pred             HHHHHHHHHHHhhhcCCCCCCCCCCCCcccccccchhHHHHHHHHHHHhccCCcccchhhhhhccCCCCCchhhhhhhhh
Q 008096           93 IYQIGMFSLTLSAILPQLRPPPCQGDQVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKY  172 (577)
Q Consensus        93 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~  172 (577)
                      +.++.....++..                      +....++...+.+++.....+...++.+|.+|++.      |+++
T Consensus       266 ~~a~~~~~~~~~~----------------------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~------rgt~  317 (368)
T TIGR00903       266 LIAAFFLALAFEL----------------------NRLALFAFIGIAGLLMLPAYAIIMDWIGKFCDKEL------HGKA  317 (368)
T ss_pred             HHHHHHHHHHHcc----------------------ccHHHHHHHHHHHHhhhhhHHHHHHHHHHhcchhh------cCcc
Confidence            3333333333222                      12223444556677777777888899999999988      9999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHHHHHHH
Q 008096          173 FNWYYFVMGAAVLVAVTVLVYIQDNVGWNWGLGIPTVAMFLSIIAF  218 (577)
Q Consensus       173 ~~~~~~~~~ig~~lg~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~  218 (577)
                      .|+.+...++|+..+|.+.+.+..  |-...|.+.++..+++.+..
T Consensus       318 ~G~~~~~g~~~~~~~~~~~~~~~~--~~~~~f~~~~~~~~i~~~~~  361 (368)
T TIGR00903       318 AGAIGFTSRAISVALALAAMLFIS--SAEAYFTFLAILITIAFAIA  361 (368)
T ss_pred             cchhhHHHHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999887763  55566766666555555544

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>PF13347 MFS_2: MFS/sugar transport protein

Probab=98.82  E-value=6.1e-08  Score=103.99  Aligned_cols=163  Identities=15%  Similarity=0.144  Sum_probs=135.6

Q ss_pred             ceehHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhHhhhhchhhhhhhhhhccchhHHHHHHHHHHHH
Q 008096           17 ITMPFIFANEVCEKLAVVGFHANMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADTYAGRFWTITVASIIYQI   96 (577)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~lg~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~i   96 (577)
                      |....+++..++..+......+..+.|.+..+|.+ ...+.+.....+...++.++.++++||+ |+|+++..+.++.++
T Consensus       225 r~~~~l~~~~~~~~~~~~~~~~~~~y~~~~vl~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~r~-gk~~~~~~~~~~~~~  302 (428)
T PF13347_consen  225 RPFRILLLAFFLQWLAFALMNTFLPYYFTYVLGNE-GLISIFMLIFFVASIVGSPLWGRLSKRF-GKKKVYIIGLLLAAL  302 (428)
T ss_pred             chHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhcCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHc-cceeehhhhHHHHHH
Confidence            45666677888888888888888888888888877 5778888899999999999999999998 999999999999999


Q ss_pred             HHHHHHHhhhcCCCCCCCCCCCCcccccccchhHHHHHHHHHHHhccCCcccchhhhhhccCCCCCch-hhhhhhhhhhH
Q 008096           97 GMFSLTLSAILPQLRPPPCQGDQVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPK-QATKTWKYFNW  175 (577)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~-~~~~r~~~~~~  175 (577)
                      +.++..+..                    +.+.+.+++..++.|++.+...+...++++|..+.++.+ .++..+..++.
T Consensus       303 ~~~~~~~~~--------------------~~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~  362 (428)
T PF13347_consen  303 GFLLLFFLG--------------------PGSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSV  362 (428)
T ss_pred             HHHHHHHHH--------------------hhhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHh
Confidence            988888764                    126788999999999999999999999999999865433 12335788899


Q ss_pred             HHHHHHHHHHHHHHHHHhhcccccch
Q 008096          176 YYFVMGAAVLVAVTVLVYIQDNVGWN  201 (577)
Q Consensus       176 ~~~~~~ig~~lg~~i~~~l~~~~gw~  201 (577)
                      +.....+|..+++.+.+.+.+..|+.
T Consensus       363 ~~~~~k~~~~la~~i~g~~l~~~Gy~  388 (428)
T PF13347_consen  363 NSFFIKIGQGLAGAIVGLLLALVGYD  388 (428)
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHhCcC
Confidence            99999999999999988776555443

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=98.79  E-value=4.4e-08  Score=106.57  Aligned_cols=176  Identities=14%  Similarity=0.146  Sum_probs=151.1

Q ss_pred             ceehHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhHhhhhchhhhhhhhhhccc--hhHHHHHHHHHH
Q 008096           17 ITMPFIFANEVCEKLAVVGFHANMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADTYAG--RFWTITVASIIY   94 (577)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~lg~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~G--rk~~~~~~~~~~   94 (577)
                      +.++.+.....+..++++....+++.|.. .++++..+++.++++..+...++.++.|+++|+. .  ++....++.++.
T Consensus       298 ~~fl~~~~~~~~~~~g~~~p~~~l~~~~~-~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~-~~~~~~~~~~~ll~~  375 (509)
T KOG2504|consen  298 PKFLLLALSNLFAYLGFNVPFVYLPSYAK-SLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKP-GIRALVLFLLTLLIA  375 (509)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCcc-ccchHHHHHHHHHHH
Confidence            44555555777788888888899999987 8999999999999999999999999999999997 6  445567777777


Q ss_pred             HHHHHHHHHhhhcCCCCCCCCCCCCcccccccchhHHHHHHHHHHHhccCCcccchhhhhhccCCCCCchhhhhhhhhhh
Q 008096           95 QIGMFSLTLSAILPQLRPPPCQGDQVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFN  174 (577)
Q Consensus        95 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  174 (577)
                      .++...+++..                      +++.++..-++.|++.|...+.....+.|+.+.++      ...++|
T Consensus       376 gl~~~~~p~~~----------------------~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~------l~~a~G  427 (509)
T KOG2504|consen  376 GLARLFLPFAT----------------------TYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEK------LSNAYG  427 (509)
T ss_pred             HHHHHHHHHhc----------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhh------cchHHH
Confidence            77777777766                      67788888889999999998888889999999888      889999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhccccc-chhhhHHHHHHHHHHHHHHHHcc
Q 008096          175 WYYFVMGAAVLVAVTVLVYIQDNVG-WNWGLGIPTVAMFLSIIAFVFGY  222 (577)
Q Consensus       175 ~~~~~~~ig~~lg~~i~~~l~~~~g-w~~~f~~~~~~~~~~~~~~~~~~  222 (577)
                      +......++.++||.+.|++.+..| |...|+...+..+++..++++..
T Consensus       428 l~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f~~~g~~~~~s~~~~~~~~  476 (509)
T KOG2504|consen  428 LLLLFQGIGALVGPPIAGLLYDITGNYDHAFYFCGLCFLLSAVLLLILR  476 (509)
T ss_pred             HHHHHhHHHHHcCcccceeeeeccCCeeeehhhcChHHHHHHHHHHHhH
Confidence            9999999999999999999988887 99999999988888777666554

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=98.76  E-value=3.7e-08  Score=101.79  Aligned_cols=141  Identities=17%  Similarity=0.247  Sum_probs=118.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-hHHHHHHHHHHhHhhhhchhhhhhhhhhccchhHHHHHHHHHHHHHHHH
Q 008096           22 IFANEVCEKLAVVGFHANMISYLTTQLHMP-LTKAANTLTNFGGTGSLTPLIGAFVADTYAGRFWTITVASIIYQIGMFS  100 (577)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~l~~~l~~~lg~s-~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~i~~~~  100 (577)
                      ++...++..+.++....++|.|+.+.+|++ ..+.+.+.+...+...++.++.|+++||+ |+|+...+......++.+.
T Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~  289 (352)
T PF07690_consen  211 LLIAFFLFFFVFSGFSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRF-GRRRRLLIAILLLILGALG  289 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhHHHHHHHHhhcccchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CcHHHHHHHHHHHHHHHHH
Confidence            444555566677788999999999999999 89999999999999999999999999998 9888887777777766666


Q ss_pred             HHHhhhcCCCCCCCCCCCCcccccccchhHHHHHHHHHHHhccCCcccchhhhhhccCCCCCchhhhhhhhhhhHHHHHH
Q 008096          101 LTLSAILPQLRPPPCQGDQVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVM  180 (577)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~  180 (577)
                      +.+...                   ..+....++..++.|++.+...+...+++.|.+|+++      |+++.++++...
T Consensus       290 ~~~~~~-------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~g~~~~~~  344 (352)
T PF07690_consen  290 LLLLPF-------------------SSSPVWLIIALFLIGFGFGIVFPILFSLIQELVPPEY------RGTAFGLFNSIG  344 (352)
T ss_dssp             HCCSHH-------------------HCHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCHTCH------HHHHHHHHHHHH
T ss_pred             HHHHHH-------------------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH------HHHHHHHHHHHH
Confidence            655431                   1245556667888999999999999999999999887      999999999999


Q ss_pred             HHHHHHHH
Q 008096          181 GAAVLVAV  188 (577)
Q Consensus       181 ~ig~~lg~  188 (577)
                      ++|..+||
T Consensus       345 ~~~~~igP  352 (352)
T PF07690_consen  345 SLGGIIGP  352 (352)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHCC
Confidence            99999987

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=98.75  E-value=1.4e-07  Score=94.88  Aligned_cols=175  Identities=11%  Similarity=0.077  Sum_probs=119.8

Q ss_pred             CcceehHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----------------C--CChHHHHHHHHHHhHhhhhchhhhhh
Q 008096           15 GIITMPFIFANEVCEKLAVVGFHANMISYLTTQL-----------------H--MPLTKAANTLTNFGGTGSLTPLIGAF   75 (577)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l-----------------g--~s~~~~~~i~~~~~~~~~~~~~~~G~   75 (577)
                      .+|..+++....+.+.+++|+.+-+.....+...                 +  .+...--.=....++....+.++.++
T Consensus       324 lrkttlllw~iwfgnafsyyg~VLlttelfqsgd~c~~~~r~~p~e~e~~~~c~~s~~~dYrdllitslaefPGlLIt~~  403 (528)
T KOG0253|consen  324 LRKTTLLLWRIWFGNAFSYYGSVLLTTELFQSGDACPLYNRFLPTELETRANCPLSVAKDYRDLLITSLAEFPGLLITGV  403 (528)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccCccccchhcchhHHHhhhcCCccchhHHHHHHHHHHhhCCchhHHHH
Confidence            3456677788999999999999887655554321                 1  11111112233456778889999999


Q ss_pred             hhhhccchhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCcccccccchhHHHHHHHHHHHhccCCcccchhhhhh
Q 008096           76 VADTYAGRFWTITVASIIYQIGMFSLTLSAILPQLRPPPCQGDQVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGA  155 (577)
Q Consensus        76 laDr~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~  155 (577)
                      +.||+ |||+++..+.+++.+..+++....                 ..+. ....++.+|+..    .+.+.+++.|..
T Consensus       404 iverl-GRKkTMal~l~~f~iflfll~~c~-----------------~rn~-~tvllf~arafi----sg~fqvaYvYtP  460 (528)
T KOG0253|consen  404 IVERL-GRKKTMALSLILFGIFLFLLTTCK-----------------TRNA-YTVLLFTARAFI----SGAFQVAYVYTP  460 (528)
T ss_pred             HHHHh-cchhHHHHHHHHHHHHHHHHHHhc-----------------Ccch-hHHHHHHHHHHH----hchheEEEEecC
Confidence            99997 999999999999888777776543                 1111 112233445443    344568899999


Q ss_pred             ccCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHHHHHHHHH
Q 008096          156 DQFDETDPKQATKTWKYFNWYYFVMGAAVLVAVTVLVYIQDNVGWNWGLGIPTVAMFLSIIAFVF  220 (577)
Q Consensus       156 ~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~lg~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~  220 (577)
                      |.||...      |+.+.|.......+|+++.|.++ ...+ -+-..+..+...+.+++.++..+
T Consensus       461 EVyPTav------RatgvGtcSsmaRIggI~~p~iA-~~~e-~s~sl~i~vy~~~~ilagIavcf  517 (528)
T KOG0253|consen  461 EVYPTAV------RATGVGTCSSMARIGGIFSPVIA-MRAE-LSTSLPIFVYGALFILAGIAVCF  517 (528)
T ss_pred             cccchhh------hhcchhhhhhHHhhhhhhhhHHH-HHhc-cceeehHHHHHHHHHHHHHHhee
Confidence            9999988      99999999999999999999888 3333 33444555666666555555443

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=98.70  E-value=5.2e-07  Score=94.65  Aligned_cols=143  Identities=11%  Similarity=-0.071  Sum_probs=96.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhHhhhhchhhhhhhhhhccchhHHHHHHHHHHHHHHHHHHH
Q 008096           24 ANEVCEKLAVVGFHANMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADTYAGRFWTITVASIIYQIGMFSLTL  103 (577)
Q Consensus        24 ~~~~~~~~~~~~~~~~l~~~l~~~lg~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~i~~~~~~~  103 (577)
                      ...++.....+....+.|.++.+.+|++..+.+++.+...++..++.++.|++.||+ |||+.+..+..+..+..+....
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~~~~~~~~~~~~~~~  279 (377)
T PRK11102        201 LASGFSFAGMFSFLTAGPFVYIELNGVSPQNFGYYFALNIVFLFVMTIINSRFVRRV-GALNMLRFGLWIQFIMGIWLVV  279 (377)
T ss_pred             HHHHHHHHHHHHHHHcCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHHHHHHH
Confidence            344444455566666778888888999999999999999999999999999999998 9999998888765544333322


Q ss_pred             hhhcCCCCCCCCCCCCcccccccchhHHHHHHHHHHHhccCCcccchhhhhhccCCCCCchhhhhhhhhhhHHHHH-HHH
Q 008096          104 SAILPQLRPPPCQGDQVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFV-MGA  182 (577)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~-~~i  182 (577)
                      ....+                  .+.+.+.++..+.+.+.+...+.....+.|..| ++      ++++.++.+.. ..+
T Consensus       280 ~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~------~g~~~~~~~~~~~~~  334 (377)
T PRK11102        280 SALLD------------------LGFWALVVGVAAFVGCVSMISSNAMAVILDEFP-HM------AGTASSLAGTLRFGI  334 (377)
T ss_pred             HHHHh------------------hhHHHHHHHHHHHHHHHHHhhHHHHHHHhcccc-cc------chHHHHHHHHHHHHH
Confidence            21011                  133444444445555555556666677777666 44      67777775544 356


Q ss_pred             HHHHHHHHHH
Q 008096          183 AVLVAVTVLV  192 (577)
Q Consensus       183 g~~lg~~i~~  192 (577)
                      |..+++.+++
T Consensus       335 g~~~g~~~~~  344 (377)
T PRK11102        335 GAIVGALLSL  344 (377)
T ss_pred             HHHHHHHHHh
Confidence            6667665543

>TIGR00898 2A0119 cation transport protein

Probab=98.69  E-value=7.5e-08  Score=105.48  Aligned_cols=143  Identities=13%  Similarity=0.064  Sum_probs=102.7

Q ss_pred             HhcCCChHHHHHHHHHHhHhhhhchhhhhhhhhhccchhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCcccccc
Q 008096           46 TQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADTYAGRFWTITVASIIYQIGMFSLTLSAILPQLRPPPCQGDQVCKEAD  125 (577)
Q Consensus        46 ~~lg~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  125 (577)
                      +.++.+....   .....+...++.++.+++.||+ |||+.+.++.++..++.+++.+..   .                
T Consensus       351 ~~~~~~~~~~---~~~~~~~~i~~~~~~~~l~dr~-grr~~~~~~~~~~~~~~l~~~~~~---~----------------  407 (505)
T TIGR00898       351 GNLGGNIYLD---LFISGLVELPAKLITLLLIDRL-GRRYTMAASLLLAGVALLLLLFVP---V----------------  407 (505)
T ss_pred             cccCCChHHH---HHHHHHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHHHHcC---C----------------
Confidence            3455554333   3344566677888999999998 999999999888888777666543   1                


Q ss_pred             cchhHHHHHHHHHHHhccCCcccchhhhhhccCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhcccccchhhhH
Q 008096          126 TGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAVLVAVTVLVYIQDNVGWNWGLG  205 (577)
Q Consensus       126 ~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~lg~~i~~~l~~~~gw~~~f~  205 (577)
                       ...+...+..++.+++.+...+...++.+|.+|++.      |+.++++.+....+|.+++|.+.+ +. ..++..+++
T Consensus       408 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~------r~~~~g~~~~~~~ig~~i~p~i~~-~~-~~~~~~~~~  478 (505)
T TIGR00898       408 -DLYFLRTALAVLGKFGITSAFQMVYLYTAELYPTVV------RNLGVGVCSTMARVGSIISPFLVY-LG-EKWLFLPLV  478 (505)
T ss_pred             -CchHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHH------HhhhHhHHHHHHHHHHHHHhHHHH-HH-HHHHhhHHH
Confidence             112334444555666666777888899999999877      999999999999999999999988 43 456666777


Q ss_pred             HHHHHHHHHHHHHHH
Q 008096          206 IPTVAMFLSIIAFVF  220 (577)
Q Consensus       206 ~~~~~~~~~~~~~~~  220 (577)
                      +.++..+++.++..+
T Consensus       479 ~~~~~~~~~~~~~~~  493 (505)
T TIGR00898       479 LFGGLALLAGILTLF  493 (505)
T ss_pred             HHHHHHHHHHHHHHc
Confidence            766666555444443

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=98.68  E-value=6e-07  Score=95.14  Aligned_cols=179  Identities=11%  Similarity=0.036  Sum_probs=132.0

Q ss_pred             ehHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhHhhhhchhhhhhhhhhccchhHHHHHHHHHHHHHH
Q 008096           19 MPFIFANEVCEKLAVVGFHANMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADTYAGRFWTITVASIIYQIGM   98 (577)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~lg~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~i~~   98 (577)
                      ++..+...+....+.-....+.+.|+++.-|.+....+.+.+...+.-.+.-...+++-.|+ |-|+++.++++..++=.
T Consensus       209 ~~~Fll~~~l~~~~~~~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~-g~~~ll~~a~~~~~vR~  287 (400)
T PF03825_consen  209 FLVFLLAAFLIGISHAAYYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRF-GIKWLLLLALVAYAVRW  287 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHH
Confidence            33444455555666666678888899755448888888888888888888889999999998 99999999999988877


Q ss_pred             HHHHHhhhcCCCCCCCCCCCCcccccccchhHHHHHHHHHHHhccCCcccchhhhhhccCCCCCchhhhhhhhhhhHHHH
Q 008096           99 FSLTLSAILPQLRPPPCQGDQVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYF  178 (577)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~  178 (577)
                      .+.+..++ |.                +..+....++-.++|+..|....+...++.+..|++.      |+++.++++.
T Consensus       288 ~l~a~~~~-~~----------------~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~------~at~Q~l~~~  344 (400)
T PF03825_consen  288 LLYAYFSD-PW----------------PFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPEL------RATAQGLYSA  344 (400)
T ss_pred             HHHHHhcC-Cc----------------HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccc------hHHHHHHHHH
Confidence            77776520 00                0011223344567999999999999999999999988      8999999877


Q ss_pred             H-HHHHHHHHHHHHHhhcccccchh------hhHHHHHHHHHHHHHHHHc
Q 008096          179 V-MGAAVLVAVTVLVYIQDNVGWNW------GLGIPTVAMFLSIIAFVFG  221 (577)
Q Consensus       179 ~-~~ig~~lg~~i~~~l~~~~gw~~------~f~~~~~~~~~~~~~~~~~  221 (577)
                      . ..+|..+|..++|++.+.+|-+.      .+.+.+...++..+++.+.
T Consensus       345 ~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~~~~v~a~~~~~~~~~f~~~  394 (400)
T PF03825_consen  345 LSFGLGGAIGSLIGGWLYDAFGARGMFDWSAVFLVFAVMALVILVLFVIL  394 (400)
T ss_pred             HHhhHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHhh
Confidence            5 58999999999999998876443      3344444444444444443

>PRK11043 putative transporter; Provisional

Probab=98.67  E-value=1e-06  Score=93.46  Aligned_cols=146  Identities=13%  Similarity=0.069  Sum_probs=107.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhHhhhhchhhhhhhhhhccchhHHHHHHHHHHHHHHHHHHHhhh
Q 008096           27 VCEKLAVVGFHANMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADTYAGRFWTITVASIIYQIGMFSLTLSAI  106 (577)
Q Consensus        27 ~~~~~~~~~~~~~l~~~l~~~lg~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~i~~~~~~~~~~  106 (577)
                      .+....++....++|.|++ ++|++..+.++......++..++.++.+++.||+ |+|+.+....+...++.+.+.+...
T Consensus       213 ~~~~~~~~~~~~~~p~~~~-~~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~-~~~~~~~~~~~~~~~~~~~~~~~~~  290 (401)
T PRK11043        213 AACSAAFFAWLTGSPFILE-QMGYSPADIGLSYVPQTIAFLVGGYGCRAALQKW-GGEQLLPWLLVLFAVSVIAIWLASL  290 (401)
T ss_pred             HHHHHHHHHHHHHhHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344455666677888875 5899999999988888888899999999999998 9999877666665555444333221


Q ss_pred             cCCCCCCCCCCCCcccccccchhHHHHHHHHHHHhccCCcccchhhhhhccCCCCCchhhhhhhhhhhHHHHHHHHHHHH
Q 008096          107 LPQLRPPPCQGDQVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAVLV  186 (577)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~l  186 (577)
                      .+                 ..+.+.+++...+.+++.+...|...+...|..| ++      ++++.++++.....+...
T Consensus       291 ~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~------~g~~~g~~~~~~~~~~~~  346 (401)
T PRK11043        291 LS-----------------HPSLVPLLIPFCVMAAANGAIYPIVVAQALRPFP-QA------TGKAAALQNTLQLGLCFL  346 (401)
T ss_pred             hc-----------------cCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCc-cc------ChHHHHHHHHHHHHHHHH
Confidence            11                 1134445566677888888888988888877776 35      788999998888888888


Q ss_pred             HHHHHHhhcccc
Q 008096          187 AVTVLVYIQDNV  198 (577)
Q Consensus       187 g~~i~~~l~~~~  198 (577)
                      ++.+.+.+.+..
T Consensus       347 ~~~~~g~l~~~~  358 (401)
T PRK11043        347 ASLLVSALISTP  358 (401)
T ss_pred             HHHHHHHccCCC
Confidence            888888887643

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=98.67  E-value=7.6e-07  Score=94.16  Aligned_cols=143  Identities=11%  Similarity=0.057  Sum_probs=92.4

Q ss_pred             HHHHHHHHHHHHHHhcCCChHHHHHHHHHHhHhhhhchhhhhhhhhhccchhHHHHHHHHHHHHHHHHHHHhhhcCCCCC
Q 008096           33 VVGFHANMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADTYAGRFWTITVASIIYQIGMFSLTLSAILPQLRP  112 (577)
Q Consensus        33 ~~~~~~~l~~~l~~~lg~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~~~~  112 (577)
                      ......+.|.|+++++|++..+.+.+.....++..++.++.|++.||+ |||+.+.++.++..++.+.+.+..       
T Consensus       219 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~-g~~~~~~~~~~~~~~~~~~~~~~~-------  290 (392)
T PRK10473        219 ILTFVNTSPVLLMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIF-KPRTLMLTSQVLFLAAGITLALSP-------  290 (392)
T ss_pred             HHHHHHhCHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHHHHH-------
Confidence            344455667788889999999999999999999999999999999998 999999999988888877777654       


Q ss_pred             CCCCCCCcccccccchhHHHHHHHHHHHhccCCcccchhhhhhccCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 008096          113 PPCQGDQVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAVLVAVTVLV  192 (577)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~lg~~i~~  192 (577)
                                     +....+....+.+.|.+...+.  .+..+..|.++  +   .+.+.++    ..++..+|+.+++
T Consensus       291 ---------------~~~~~~~~~~l~~~g~~~~~~~--~~~~~~~~~~~--~---~g~~~~~----~~~~~~~g~~~~~  344 (392)
T PRK10473        291 ---------------SHAVSLFGITLICAGFSVGFGV--AMSQALGPFSL--R---AGVASST----LGIAQVCGSSLWI  344 (392)
T ss_pred             ---------------HHHHHHHHHHHHHHHHHHHhHH--HHHHHhccCcc--c---ccHHHHH----HHHHHHHHHHHHH
Confidence                           2222333333333333332222  22333445433  1   1333333    4456666666666


Q ss_pred             hhcccccchhhhHHHHH
Q 008096          193 YIQDNVGWNWGLGIPTV  209 (577)
Q Consensus       193 ~l~~~~gw~~~f~~~~~  209 (577)
                      ++.+..|+.....+.+.
T Consensus       345 ~l~~~~g~~~~~~~~~~  361 (392)
T PRK10473        345 WLAAVLGISAWNMLIGI  361 (392)
T ss_pred             HHHHHhccchhHHHHHH
Confidence            77666666544433333

>PRK10429 melibiose:sodium symporter; Provisional

Probab=98.66  E-value=1.2e-07  Score=103.25  Aligned_cols=165  Identities=14%  Similarity=0.073  Sum_probs=120.3

Q ss_pred             ceehHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhHhhhhchhhhhhhhhhccchhHHHHHHHHHHHH
Q 008096           17 ITMPFIFANEVCEKLAVVGFHANMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADTYAGRFWTITVASIIYQI   96 (577)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~lg~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~i   96 (577)
                      |.++.+++..++.+...+....+.+.|.+..++ +....+++.+...++..++.++.++++||+ |+|+++.++.++..+
T Consensus       231 ~~~~~ll~~~~~~~~~~~~~~~~~~y~~~y~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~-gkk~~~~~~~~~~~~  308 (473)
T PRK10429        231 DQLSCLLGMALAYNIASNIINGFAIYYFTYVIG-DADLFPYYLSYAGAANLVTLILFPRLVKSL-SRRILWAGASIFPVL  308 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhheeeEEEEECC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CcHHHHHHHHHHHHH
Confidence            556666667777777777666666655544444 666777777777788899999999999998 999999988887776


Q ss_pred             HHHHHHHhhhcCCCCCCCCCCCCcccccccchhHHHHHHHHHHHhccCCcccchhhhhhccCCCCCch-hhhhhhhhhhH
Q 008096           97 GMFSLTLSAILPQLRPPPCQGDQVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPK-QATKTWKYFNW  175 (577)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~-~~~~r~~~~~~  175 (577)
                      +.+...+....+                 +.+.+.+++.-++.|++.+...+...++++|..+.++.+ .++..+..++.
T Consensus       309 ~~~~~~~~~~~~-----------------~~~~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~  371 (473)
T PRK10429        309 SCGVLLLMGLAA-----------------PHNALLIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSV  371 (473)
T ss_pred             HHHHHHHHhccC-----------------chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHH
Confidence            665554321001                 124556667777889999999999999999998754321 12224668888


Q ss_pred             HHHHHHHHHHHHHHHHHhhcccccc
Q 008096          176 YYFVMGAAVLVAVTVLVYIQDNVGW  200 (577)
Q Consensus       176 ~~~~~~ig~~lg~~i~~~l~~~~gw  200 (577)
                      ..+...+|..+|+.+.|++.+..|+
T Consensus       372 ~~~~~K~~~al~~~i~g~~l~~~Gy  396 (473)
T PRK10429        372 QTMVVKGGSAFAAFFIGVVLGLIGY  396 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            9999999999999999988765555

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=98.61  E-value=1.9e-08  Score=104.21  Aligned_cols=150  Identities=17%  Similarity=0.243  Sum_probs=121.0

Q ss_pred             cchhhhhhHHHHHHHHHhhhhhhhhccccccCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcc
Q 008096          360 AGSMSVFTMVSMLSTIALYDRIIIPVARKFTGLDRGITFLHRMGIGFVISVLATLVAGFVEMKRKQAALAHGLVDKPHII  439 (577)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ig~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  439 (577)
                      .+.++....+.-+++.|+.++    +++|..|+..       +.+|..++.++.+.-++..                   
T Consensus        70 ~Gll~~vf~v~~~i~sPl~gy----LadryNR~~v-------~~vG~~iW~~Av~~~~fs~-------------------  119 (493)
T KOG1330|consen   70 LGLLQTVFIVVFMIASPLFGY----LADRYNRKRV-------IAVGIFIWTLAVFASGFSN-------------------  119 (493)
T ss_pred             ccchhHHHHHHHHHHHHHHHH----HHhhcCcceE-------EeeHHHHHHHHHHHHHHHH-------------------
Confidence            456666777777889999888    7777655544       8999999999988888776                   


Q ss_pred             ccchhhHHHHHHHHHHHHHHHHhhhhhhhhhcccCcccHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCCCCCCCCCCC
Q 008096          440 IPISVLWLVPQYSLHGIAEAFMSVGHLEFLYDQAPESMRSTATALFWTANSIGNYVSTLLVTLVHKFSAGPNGSNWLPDN  519 (577)
Q Consensus       440 ~~~~~~~l~~~~~l~gi~~~~~~~~~~~~v~~~~P~~~rg~~~gi~~~~~~lg~~l~~~i~~~v~~~~~~~~~~~~~~~~  519 (577)
                         ++|.+.+.-.+.|+||..+.|..+.++.|++|+..|++..++++++..+|..+|......+.+..            
T Consensus       120 ---~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~------------  184 (493)
T KOG1330|consen  120 ---HFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLT------------  184 (493)
T ss_pred             ---HHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCc------------
Confidence               78888888899999999999999999999999999999999999999999888877765553332            


Q ss_pred             CCCcchhhHHHHHHHHHHHHHHHHHhhhhhccccccccc
Q 008096          520 NLNKGKLEYFYWLITLLQVVNVIYYFFCAKIYTFKPIQM  558 (577)
Q Consensus       520 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  558 (577)
                          .++.|.|...++++++.++..+++.++..++..++
T Consensus       185 ----~~Wr~af~~~avl~vi~~~L~~~f~~eP~rga~~~  219 (493)
T KOG1330|consen  185 ----FWWRWAFRGSAVLGVIVGLLVFLFVREPERGARDE  219 (493)
T ss_pred             ----cceEEEEEeehHHHHHHHHHHHhhccCcccccccc
Confidence                22566688889999999888888877655444443

>PRK09669 putative symporter YagG; Provisional

Probab=98.61  E-value=2.9e-07  Score=99.27  Aligned_cols=159  Identities=14%  Similarity=0.100  Sum_probs=107.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhHhhhhchhhhhhhhhhccchhHHHHHHHHHHHHHHHH
Q 008096           21 FIFANEVCEKLAVVGFHANMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADTYAGRFWTITVASIIYQIGMFS  100 (577)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~l~~~l~~~lg~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~i~~~~  100 (577)
                      .++...++...+........+.|.+..++ +.+..+.+.....+...++.++.++++||+ |+|+.+.++.++..++.+.
T Consensus       233 ~l~~~~~~~~~~~~~~~~~~~y~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~-gk~~~~~~~~~~~~~~~~~  310 (444)
T PRK09669        233 IMFIFNVVLLTAVVTRGGATLYYVNYVLL-RPDLATLFLVTGMIAGLFGALLSERLLGKF-DRVRAFKWTIVAFVILSAL  310 (444)
T ss_pred             HHHHHHHHHHHHHHHHhhhhheeeeeecC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHHH
Confidence            33334444444443333333333333333 344445566666677788889999999998 9999999887766554433


Q ss_pred             HHHhhhcCCCCCCCCCCCCcccccccchhHHHHHHHHHHHhccCCcccchhhhhhccCCCCCchh-hhhhhhhhhHHHHH
Q 008096          101 LTLSAILPQLRPPPCQGDQVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQ-ATKTWKYFNWYYFV  179 (577)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~  179 (577)
                      ..+..                    +.+.+.+++..++.|++.+...+...++++|..+.+|.+. ++..+..++.++..
T Consensus       311 ~~~~~--------------------~~~~~~~~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~  370 (444)
T PRK09669        311 IFFIP--------------------PSNVWLIFALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFA  370 (444)
T ss_pred             HHHhC--------------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHH
Confidence            33221                    1256667777888999999999999999999987544222 22246778889999


Q ss_pred             HHHHHHHHHHHHHhhcccccch
Q 008096          180 MGAAVLVAVTVLVYIQDNVGWN  201 (577)
Q Consensus       180 ~~ig~~lg~~i~~~l~~~~gw~  201 (577)
                      ..+|..+|+.++|++.+..|+.
T Consensus       371 ~klg~alg~~i~g~ll~~~Gy~  392 (444)
T PRK09669        371 IKLGLAIGGAVVGWILAWVDYV  392 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCC
Confidence            9999999999999887766663

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.61  E-value=1e-06  Score=94.12  Aligned_cols=194  Identities=11%  Similarity=0.075  Sum_probs=134.1

Q ss_pred             CCCcceehHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhHhhhhchhhhhhhhhhccchhHHHHHHHH
Q 008096           13 KGGIITMPFIFANEVCEKLAVVGFHANMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADTYAGRFWTITVASI   92 (577)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~lg~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~   92 (577)
                      +.+++....++.+.++..+.---...+....+-++-|++..++.++....+....++.+.+.++.||+ |||+.++.+..
T Consensus       265 ~~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~-gRRpLll~~~~  343 (485)
T KOG0569|consen  265 PTLRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRL-GRRPLLLISLS  343 (485)
T ss_pred             cchhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCcHHHHHHHH
Confidence            45555556666666666665544444445555567899999999999999999999999999999998 99999999999


Q ss_pred             HHHHHHHHHHHhhhcCCCCCCCCCCCCcccccccchhHHHHHHHHHH--HhccCCcccchhhhhhccCCCCCchhhhhhh
Q 008096           93 IYQIGMFSLTLSAILPQLRPPPCQGDQVCKEADTGQLAILYASLLLA--ALGSGGIRPCVVAFGADQFDETDPKQATKTW  170 (577)
Q Consensus        93 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~  170 (577)
                      ++.+..+++.....+..             .......+..+++.++.  .++.| ..|..+-+.+|++|++.      |.
T Consensus       344 ~~~~~~~~~~~~~~l~~-------------~~~~~~~y~~i~~~~~~~~~f~~G-~gpi~~fi~aELf~~~~------R~  403 (485)
T KOG0569|consen  344 LMAVALLLMSIALFLSN-------------SFGSWLSYLCIAAIFLFIISFAIG-PGPIPWFIGAELFPQSA------RS  403 (485)
T ss_pred             HHHHHHHHHHHHHHHHH-------------HhhhHHHHHHHHHHHHHHHhhhcC-CCchhHHHHHHhCCccc------hH
Confidence            99888887776542211             00000111223333333  33333 35788888999999988      99


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHHHHHHHHHcccccccc
Q 008096          171 KYFNWYYFVMGAAVLVAVTVLVYIQDNVGWNWGLGIPTVAMFLSIIAFVFGYPLYRNL  228 (577)
Q Consensus       171 ~~~~~~~~~~~ig~~lg~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~  228 (577)
                      .+.++-+....+..++-......+.+.+|= +.|++..+...+..+..++..|+++.+
T Consensus       404 aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~-~~filF~i~~~~~~i~~~~~lPETkgr  460 (485)
T KOG0569|consen  404 AAQSVATAVNWLSNFIVGFAFPPLQNVIGP-YVFILFVIPLAIFLIYLYRYLPETKGR  460 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHHHHHhCcccCCC
Confidence            999988777777777666666667666664 456666666666666666666665443

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.59  E-value=3.3e-05  Score=82.00  Aligned_cols=104  Identities=10%  Similarity=0.145  Sum_probs=79.7

Q ss_pred             HHHHHhHhhhhchhhhhhhhhhccchhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCcccccccchhHHHHHHHH
Q 008096           58 TLTNFGGTGSLTPLIGAFVADTYAGRFWTITVASIIYQIGMFSLTLSAILPQLRPPPCQGDQVCKEADTGQLAILYASLL  137 (577)
Q Consensus        58 i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (577)
                      -..+-.....+.+++++.+.|+. |.|..+.++...+..-.+..-+-                       |-+.++.+-.
T Consensus        55 ~~aiiY~~ftv~~l~~psiv~~i-~~K~~lv~ga~~y~~f~~gfl~~-----------------------N~y~~yfssa  110 (461)
T KOG3098|consen   55 GQAIIYAFFTVSCLFAPSIVNFL-GPKWALVIGATCYAAFPLGFLFP-----------------------NSYYLYFSSA  110 (461)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHh-hHHHHHHHHhHHHHHHHHHHHhc-----------------------chHHHHHHHH
Confidence            36667777888899999999997 99999999988777665555542                       5677899999


Q ss_pred             HHHhccCCcccchhhhhhccCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHHHH
Q 008096          138 LAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAVLVAVTVL  191 (577)
Q Consensus       138 l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~lg~~i~  191 (577)
                      +.|+|.+..+..--.++++...++.      +++..++.-.....+.++|.++.
T Consensus       111 llG~Gaallw~GqG~ylt~~st~~t------ie~Nisi~Wai~~~~li~Ggi~l  158 (461)
T KOG3098|consen  111 LLGFGAALLWTGQGGYLTSNSTRET------IERNISIFWAIGQSSLIIGGIIL  158 (461)
T ss_pred             HhhhhHHheecccceehhhcCChhh------HHHHHHHHHHHHHHHHHhhhHhh
Confidence            9999999999999999999888766      55555554444455555554443

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=98.57  E-value=9.3e-07  Score=77.89  Aligned_cols=132  Identities=19%  Similarity=0.245  Sum_probs=91.5

Q ss_pred             hHHHHHHHHHhhhhhhhhccccccCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccccchhhH
Q 008096          367 TMVSMLSTIALYDRIIIPVARKFTGLDRGITFLHRMGIGFVISVLATLVAGFVEMKRKQAALAHGLVDKPHIIIPISVLW  446 (577)
Q Consensus       367 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ig~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  446 (577)
                      ..+..++..+..++    +.||.++|+.       +..+..+..++.+......                      +.+.
T Consensus         7 ~~~~~~~~~~~~g~----~~d~~g~~~~-------~~~~~~~~~~~~~~~~~~~----------------------~~~~   53 (141)
T TIGR00880         7 YALGQLIYSPLSGL----LTDRFGRKPV-------LLVGLFIFVLSTAMFALSS----------------------NITV   53 (141)
T ss_pred             ehhHHHHHHhhHHH----HHhhcchhHH-------HHHHHHHHHHHHHHHHHhc----------------------cHHH
Confidence            34445556666555    5556554432       5666666666655544333                      4455


Q ss_pred             HHHHHHHHHHHHHHHhhhhhhhhhcccCcccHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCCcchh
Q 008096          447 LVPQYSLHGIAEAFMSVGHLEFLYDQAPESMRSTATALFWTANSIGNYVSTLLVTLVHKFSAGPNGSNWLPDNNLNKGKL  526 (577)
Q Consensus       447 l~~~~~l~gi~~~~~~~~~~~~v~~~~P~~~rg~~~gi~~~~~~lg~~l~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~  526 (577)
                      .....++.+++.+...+..+.++.|..|++.|+++.++.++...+|..+++.+.+.+.+..                 ++
T Consensus        54 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-----------------~~  116 (141)
T TIGR00880        54 LIIARFLQGFGAAFALVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFL-----------------GW  116 (141)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhccc-----------------ch
Confidence            5666788889988889999999999999999999999999999999999999988864321                 22


Q ss_pred             hHHHHHHHHHHHHHHHHHhhhh
Q 008096          527 EYFYWLITLLQVVNVIYYFFCA  548 (577)
Q Consensus       527 ~~~~~~~~~~~~~~~i~~~~~~  548 (577)
                      .+.|+..+...++..+..++..
T Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~  138 (141)
T TIGR00880       117 RAPFLFLAILALAAFILLAFLL  138 (141)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcC
Confidence            4456666666666655555543

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=98.56  E-value=3.2e-06  Score=83.05  Aligned_cols=162  Identities=10%  Similarity=0.099  Sum_probs=117.0

Q ss_pred             HHHHHHHHHhcCCChHHHHHHHHHHhHhhhhchhhhhhhhhhccchhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCC
Q 008096           38 ANMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADTYAGRFWTITVASIIYQIGMFSLTLSAILPQLRPPPCQG  117 (577)
Q Consensus        38 ~~l~~~l~~~lg~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  117 (577)
                      +.....+++.+|+|.+|...+..+..++..+ .++.|.+.|++ |.+.++.+|.+...+|..++.++-  ...       
T Consensus        22 s~yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~-G~~~G~l~d~~-gp~~~l~iG~~~~~~GY~~~~l~~--~~~-------   90 (250)
T PF06813_consen   22 SAYSPQLKSRLGYSQSQLNTLSTAGDIGSYF-GILAGLLYDRF-GPWVVLLIGAVLGFVGYGLLWLAV--SGR-------   90 (250)
T ss_pred             hhhhHHHHHHhCCCHHHHHHHHHHHHHHhhc-cHHHHHHHHhc-chHHHHHHHHHHHHHHHHHHHHHH--hCc-------
Confidence            4457788999999999999999999999986 58999999998 999999999999999988887764  111       


Q ss_pred             CCcccccccchhHHHHHHHHHHHhccCCcccchhhhhhccCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhccc
Q 008096          118 DQVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAVLVAVTVLVYIQDN  197 (577)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~lg~~i~~~l~~~  197 (577)
                            ....++|.+.+..++.+.+.+....++.....+.||+ +      ||++.++.-....+++.+-..+...+.++
T Consensus        91 ------i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP~-~------RG~vvgilk~~~GLSaai~t~i~~~~f~~  157 (250)
T PF06813_consen   91 ------IPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFPR-S------RGTVVGILKGFFGLSAAIFTQIYSAFFGD  157 (250)
T ss_pred             ------cCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCcc-c------cCceehhhhHHHHhHHHHHHHHHHHHcCC
Confidence                  1123677788888888888887777777777788984 5      89999997777666655544444333333


Q ss_pred             ccchhhhHHHHHHHHHHHHHHHHccc
Q 008096          198 VGWNWGLGIPTVAMFLSIIAFVFGYP  223 (577)
Q Consensus       198 ~gw~~~f~~~~~~~~~~~~~~~~~~~  223 (577)
                      -.-...+.++....++.++...+.++
T Consensus       158 ~~~~fll~la~~~~~v~l~~~~~vr~  183 (250)
T PF06813_consen  158 DPSSFLLFLAVLPAVVCLVAMFFVRP  183 (250)
T ss_pred             ChHHHHHHHHHHHHHHHHHHhhheec
Confidence            22333444444445555555555544

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=98.52  E-value=7.9e-07  Score=92.76  Aligned_cols=139  Identities=14%  Similarity=0.081  Sum_probs=102.4

Q ss_pred             ehHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhHhhhhchhhhhhhhhhccchhHHHHHHHHHHHHHH
Q 008096           19 MPFIFANEVCEKLAVVGFHANMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADTYAGRFWTITVASIIYQIGM   98 (577)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~lg~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~i~~   98 (577)
                      .+.+....++.....+.+..+++.|+++.+|++..+++++.....+...++.+++|+++||+ |||+.+..+......+.
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~~~~~~~~~~  305 (366)
T TIGR00886       227 TWILALLYSVTFGSFLGVSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRL-GGARKLLMSFLGVAMGA  305 (366)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhh-ccchhHHHHHHHHHHHH
Confidence            33444445555556677888999999999999999999999999999999999999999998 99988887777666666


Q ss_pred             HHHHHhhhcCCCCCCCCCCCCcccccccchhHHHHHHHHHHHhccCCcccchhhhhhccCCCCCchhhhhhhhhhhHHHH
Q 008096           99 FSLTLSAILPQLRPPPCQGDQVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYF  178 (577)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~  178 (577)
                      .++.+..  .                +..+...+.....+.+++.|...+...+++++.+| ++      ++.+.|+.+.
T Consensus       306 ~~~~~~~--~----------------~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~------~g~~~g~~~~  360 (366)
T TIGR00886       306 FLVVLGL--V----------------SPLSLAVFIVLFVALFFFSGAGNGSTFALVPHIFR-RA------TGAVSGLVGA  360 (366)
T ss_pred             HHHHhcC--C----------------CcchHHHHHHHHHHHHHHhccccchhhhcchhhch-hh------cccHHHHHHH
Confidence            6555432  0                00034444555555666666666777788888877 34      8888998877


Q ss_pred             HHHHH
Q 008096          179 VMGAA  183 (577)
Q Consensus       179 ~~~ig  183 (577)
                      ..++|
T Consensus       361 ~~~~g  365 (366)
T TIGR00886       361 IGNLG  365 (366)
T ss_pred             hccCC
Confidence            77665

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=98.48  E-value=4.8e-06  Score=88.09  Aligned_cols=141  Identities=8%  Similarity=-0.042  Sum_probs=100.4

Q ss_pred             HHHHHHHHHHHHHhcCCChHHHHHHHHHHhHhhhhchhhhhhhhhhccchhHHHHHHHHHHHHHHHHHHHhhhcCCCCCC
Q 008096           34 VGFHANMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADTYAGRFWTITVASIIYQIGMFSLTLSAILPQLRPP  113 (577)
Q Consensus        34 ~~~~~~l~~~l~~~lg~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  113 (577)
                      .......+.|+++.+|++..+.+++......+..++.++.+++.||+ +++....  .....++.+.........     
T Consensus       224 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~-~~~~~~~--~~~~~~~~~~~~~~~~~~-----  295 (394)
T PRK11652        224 AVFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRF-STLMWQS--VICCLLAGLLMWIPGWFG-----  295 (394)
T ss_pred             HHHHHhChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH--HHHHHHHHHHHHHHHHhc-----
Confidence            33345567788888999999999998888888888999999999998 7433332  222222222211111000     


Q ss_pred             CCCCCCcccccccchhHHHHHHHHHHHhccCCcccchhhhhhccCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHHHHHh
Q 008096          114 PCQGDQVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAVLVAVTVLVY  193 (577)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~lg~~i~~~  193 (577)
                                  ..+.+.+.+..++.++|.+...|...++..|.+|+ +      ++...++.+...++|..+++.+++.
T Consensus       296 ------------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~------~g~~~~~~~~~~~lg~~~~~~~~~~  356 (394)
T PRK11652        296 ------------VMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFPY-L------AGTAGALLGGLQNIGSGLAALLSAM  356 (394)
T ss_pred             ------------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-c------chHHHHHHHHHHHHHHHHHHHHHHH
Confidence                        01345567778889999999999999999998873 4      7788899998999999999999988


Q ss_pred             hcccccch
Q 008096          194 IQDNVGWN  201 (577)
Q Consensus       194 l~~~~gw~  201 (577)
                      +.+...+.
T Consensus       357 ~~~~~~~~  364 (394)
T PRK11652        357 LPQTGQFS  364 (394)
T ss_pred             ccCCchHH
Confidence            87654443

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=98.47  E-value=1.9e-06  Score=90.43  Aligned_cols=178  Identities=11%  Similarity=0.096  Sum_probs=137.1

Q ss_pred             ceehHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CChHHHHHHHHHHhHhhhhchhhhhhhhhhccchhHHHHHHHHH
Q 008096           17 ITMPFIFANEVCEKLAVVGFHANMISYLTTQLH---MPLTKAANTLTNFGGTGSLTPLIGAFVADTYAGRFWTITVASII   93 (577)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~lg---~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~   93 (577)
                      |.++.+..........++..-.-.+.|.+..++   .++...|.+.+...+.-.++-.+..++.+|+ |.|+.++++..+
T Consensus       220 ~~fw~~~l~v~g~~~~Y~vfdqqf~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~ri-g~k~~Lllag~i  298 (412)
T PF01306_consen  220 RNFWFFVLFVIGVAAIYDVFDQQFPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRI-GAKNLLLLAGVI  298 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhc-ChHhHHHHHHHH
Confidence            344444443344444455555557788876553   4566788899999999999999999999998 999999999999


Q ss_pred             HHHHHHHHHHhhhcCCCCCCCCCCCCcccccccchhHHHHHHHHHHHhccCCcccchhhhhhccCCCCCchhhhhhhhhh
Q 008096           94 YQIGMFSLTLSAILPQLRPPPCQGDQVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYF  173 (577)
Q Consensus        94 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  173 (577)
                      +.+=.+++++++                      +.+.+.+...+.++-.+....++.-|+++.+|++.      ..+.+
T Consensus       299 ~~iRi~~~~~~~----------------------~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rl------sAt~y  350 (412)
T PF01306_consen  299 MAIRIIGSGFAT----------------------NPWVISLIKLLHALEFPLLLVAAFKYITAHFDKRL------SATLY  350 (412)
T ss_dssp             HHHHHHHHHT------------------------SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGG------HHHHH
T ss_pred             HHHHHHHHhhhc----------------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhH------HHHHH
Confidence            999889999877                      78889999999999999999999999999999765      55666


Q ss_pred             hH-HHHHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHHHHHHHHHccc
Q 008096          174 NW-YYFVMGAAVLVAVTVLVYIQDNVGWNWGLGIPTVAMFLSIIAFVFGYP  223 (577)
Q Consensus       174 ~~-~~~~~~ig~~lg~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~  223 (577)
                      .+ ++.+.++|..+.+.++|.+.|++|++.+|++.+.+.++..++.++..+
T Consensus       351 ~v~~~~~~~~~~~i~s~~~G~lyd~~G~~~tylimg~iv~~~~li~~f~l~  401 (412)
T PF01306_consen  351 LVGFQFAKQIGIIILSPLAGYLYDRIGFQHTYLIMGLIVLPFTLISAFTLK  401 (412)
T ss_dssp             HHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-
T ss_pred             HHHHHHHHHHHHHHHhhhHHhhHhhcCcHHHHHHHHHHHHHHHHHheeeec
Confidence            66 467779999999999999999999999998777766555555444443

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.42  E-value=2.1e-06  Score=92.37  Aligned_cols=175  Identities=13%  Similarity=0.068  Sum_probs=119.4

Q ss_pred             eehHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhHhhhhchhhhhhhhhhccc-------hhHHH-HH
Q 008096           18 TMPFIFANEVCEKLAVVGFHANMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADTYAG-------RFWTI-TV   89 (577)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~lg~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~G-------rk~~~-~~   89 (577)
                      .++.+....+++++.++.++.++|.|+.+.+|++..+.|++.++-.+...+..+++|.++||...       +||.+ .+
T Consensus       259 ~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~i  338 (466)
T KOG2532|consen  259 PVWAIWISAFGGNWGFYLLLTYLPTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNTI  338 (466)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHhH
Confidence            35667779999999999999999999999999999999999999999999999999999999733       22222 22


Q ss_pred             HHHHHHHHHHHHHHhhhcCCCCCCCCCCCCcccccccc--hhHHHHHHHHHHHhccCCcccchhhhhhccCCCCCchhhh
Q 008096           90 ASIIYQIGMFSLTLSAILPQLRPPPCQGDQVCKEADTG--QLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQAT  167 (577)
Q Consensus        90 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~  167 (577)
                      +....++..+.+++..   .               ++.  ....+.++..+.|+..++    ...-..|..|.+      
T Consensus       339 ~~~~~ai~l~~l~~~~---~---------------~~~~~a~~~l~~~~~~~g~~~~G----f~~~~~~~apq~------  390 (466)
T KOG2532|consen  339 AFGGPAVFLLVLAFTS---D---------------EHRLLAVILLTIAIGLSGFNISG----FYKNHQDIAPQH------  390 (466)
T ss_pred             HHHHHHHHHHeeeecC---C---------------CcchHHHHHHHHHHHHcccchhh----hHhhhhhccchH------
Confidence            3322333333333322   1               011  112222222222333222    222223323432      


Q ss_pred             hhhhhhhHHHHHHHHHHHHHHHHHHhhccc---ccchhhhHHHHHHHHHHHHHHHHc
Q 008096          168 KTWKYFNWYYFVMGAAVLVAVTVLVYIQDN---VGWNWGLGIPTVAMFLSIIAFVFG  221 (577)
Q Consensus       168 ~r~~~~~~~~~~~~ig~~lg~~i~~~l~~~---~gw~~~f~~~~~~~~~~~~~~~~~  221 (577)
                       -+..+++.+...++..+++|.+.+.+..+   ..|+..|++.++..+++-+.+.+.
T Consensus       391 -a~~l~g~~~~~~~~~~~~~P~~vg~~~~~~t~~eW~~VF~i~a~i~~~~~i~f~~f  446 (466)
T KOG2532|consen  391 -AGFVMGIINFVGALAGFIAPLLVGIIVTDNTREEWRIVFLIAAGILIVGNIIFLFF  446 (466)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHheeeEeCCCCHHHHHHHHHHHHHHHHHhchheeEe
Confidence             57889999999999999999999998843   369999999998887776554443

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=98.39  E-value=2.6e-06  Score=90.28  Aligned_cols=161  Identities=17%  Similarity=0.199  Sum_probs=128.6

Q ss_pred             ehHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhHhhhhchhhhhhhhhhccchhHHHHHHHHHHHHHH
Q 008096           19 MPFIFANEVCEKLAVVGFHANMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADTYAGRFWTITVASIIYQIGM   98 (577)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~lg~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~i~~   98 (577)
                      ....+...++...++....+.+..|.+..+|.++.+..+.......+..++.++..++++|+ |+|+++.++.++.+++.
T Consensus       238 ~~~~l~~~l~~~~~~~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~-gkk~~~~~~~~~~~i~~  316 (467)
T COG2211         238 LLLLLLMNLLLFIAFNIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKF-GKKKLFLIGLLLLAVGY  316 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-chHHHHHHHHHHHHHHH
Confidence            33444467777777777777778888888899999998998888888888899999999998 99999999999999999


Q ss_pred             HHHHHhhhcCCCCCCCCCCCCcccccccchhHHHHHHHHHHHhccCCcccchhhhhhccCCCCCchh-hhhhhhhhhHHH
Q 008096           99 FSLTLSAILPQLRPPPCQGDQVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQ-ATKTWKYFNWYY  177 (577)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~-~~~r~~~~~~~~  177 (577)
                      ++..+..                    .++...+++..++.++|.+...+...++++|..+-+|.+. ++.-|..++...
T Consensus       317 ~~~~f~~--------------------~~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~t  376 (467)
T COG2211         317 LLLYFTP--------------------AGSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMT  376 (467)
T ss_pred             HHHHhhc--------------------CcchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHH
Confidence            9988865                    2378888899999999999999999999999987654332 222356677777


Q ss_pred             HHHHHHHHHHHHHHHhhcccccc
Q 008096          178 FVMGAAVLVAVTVLVYIQDNVGW  200 (577)
Q Consensus       178 ~~~~ig~~lg~~i~~~l~~~~gw  200 (577)
                      ...=+|..+|..+.|++....|+
T Consensus       377 F~~K~g~ala~~~~g~~L~~~Gy  399 (467)
T COG2211         377 FFRKLGLALAGFIPGWILGAIGY  399 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCC
Confidence            77778888888777776554443

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=98.39  E-value=2.7e-06  Score=92.57  Aligned_cols=187  Identities=9%  Similarity=0.021  Sum_probs=130.1

Q ss_pred             eehHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHH----HHHHHHHHhHhhhhchhhhh----hhhhhccchhHH--H
Q 008096           18 TMPFIFANEVCEKLAVVGFHANMISYLTTQLHMPLTK----AANTLTNFGGTGSLTPLIGA----FVADTYAGRFWT--I   87 (577)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~lg~s~~~----~~~i~~~~~~~~~~~~~~~G----~laDr~~Grk~~--~   87 (577)
                      .+..+++...+....+.-..+.++.|.+++.+.+...    .+++.+.-.+...+.+++..    ++.||..+.+..  +
T Consensus       273 ~~l~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~~~~ip~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~  352 (475)
T TIGR00924       273 AYIVLFLEAVVFWVLYAQMPTSLNFFADNNMHHEMLGMSVPVIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKF  352 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccceEECHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHH
Confidence            3444455555666666666777888887765544222    56777777777777776655    445541122333  4


Q ss_pred             HHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCcccccccchhHHHHHHHHHHHhccCCcccchhhhhhccCCCCCchhhh
Q 008096           88 TVASIIYQIGMFSLTLSAILPQLRPPPCQGDQVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQAT  167 (577)
Q Consensus        88 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~  167 (577)
                      .+|+++..++.+.++++.....             .....+.+.++...++.++|+....|...+++.+..|++.     
T Consensus       353 ~~G~~l~~~~~~~~~~~~~~~~-------------~~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~~~-----  414 (475)
T TIGR00924       353 TLGMLFCGASFLTFAASIWFAD-------------AGGLTSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQRL-----  414 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcC-------------CCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHH-----
Confidence            7788888888877776421100             0012378889999999999999999999999999999887     


Q ss_pred             hhhhhhhHHHHHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHHHHHHHHHccc
Q 008096          168 KTWKYFNWYYFVMGAAVLVAVTVLVYIQDNVGWNWGLGIPTVAMFLSIIAFVFGYP  223 (577)
Q Consensus       168 ~r~~~~~~~~~~~~ig~~lg~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~  223 (577)
                       |++++++++....+|..+++.+........+|...|...++.+++..+++++..|
T Consensus       415 -~g~~~g~~~l~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  469 (475)
T TIGR00924       415 -MGQMLGMWFLAQAMGSLLGGYLATFGAVPQGVTGVFGKIGLVTLLVGVVMALMVP  469 (475)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence             9999999999999999999988887766667877776666655555555444444

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=98.38  E-value=5.5e-06  Score=88.38  Aligned_cols=158  Identities=11%  Similarity=0.004  Sum_probs=113.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhc-CCChHHHHHHHHHHhHhhhhchhhhhhhhhhccchhHHHHHHHHHHHHHHHHH
Q 008096           23 FANEVCEKLAVVGFHANMISYLTTQL-HMPLTKAANTLTNFGGTGSLTPLIGAFVADTYAGRFWTITVASIIYQIGMFSL  101 (577)
Q Consensus        23 ~~~~~~~~~~~~~~~~~l~~~l~~~l-g~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~i~~~~~  101 (577)
                      ....++......+..++++.|+++.. +.+....+...+.+.....++.+++|+++||+ ++|+.+.++.++..+..++.
T Consensus       238 ~l~~f~yvg~e~~~~s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~-~~~~~l~i~~~~~~~~~ll~  316 (410)
T TIGR00885       238 VIAQFFYVGVQIMCWTFIIQYAVRLIPGMTAGFAANYNIGAMVIFFISRFIGTWLISYL-AAHKVLMAYAIIGMALCLGS  316 (410)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CHHHHHHHHHHHHHHHHHHH
Confidence            33444444444467788999987532 55666666677777788899999999999998 99999988888777776666


Q ss_pred             HHhhhcCCCCCCCCCCCCcccccccchhHHHHHHHHHHHhccCCcccchhhhhhccCCCCCchhhhhhhhhhhHHHHHHH
Q 008096          102 TLSAILPQLRPPPCQGDQVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMG  181 (577)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~  181 (577)
                      .+..                      +. ......++.|++.+.++|...++..+..+++.      +.. .+...++ .
T Consensus       317 ~~~~----------------------~~-~~~~~l~~~glf~s~~fp~i~sl~~~~~g~~~------~~~-s~~l~~~-~  365 (410)
T TIGR00885       317 IFAG----------------------GH-VGLYCLTLCSAFMSLMFPTIYGIALKGLGQDT------KYG-AAGLVMA-I  365 (410)
T ss_pred             HHcC----------------------Ch-HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh------hhh-HHHHHHH-H
Confidence            6543                      22 23466677788888888999999999888643      222 2222333 3


Q ss_pred             HHHHHHHHHHHhhcccc------cchhhhHHHHHHHH
Q 008096          182 AAVLVAVTVLVYIQDNV------GWNWGLGIPTVAMF  212 (577)
Q Consensus       182 ig~~lg~~i~~~l~~~~------gw~~~f~~~~~~~~  212 (577)
                      +|+.+.|.+.|++.|..      +.+..|+++.++.+
T Consensus       366 ~Gga~~p~l~G~~~d~~~~~~~~~~~~~~~~~~~~~~  402 (410)
T TIGR00885       366 IGGGIVPPLQGFIIDMKEIAAAPAVNTSFILPLLCFA  402 (410)
T ss_pred             hccchHHHHHHHHHHHhcccccCccchHHHHHHHHHH
Confidence            99999999999999853      47778877666544

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=98.34  E-value=1e-05  Score=80.37  Aligned_cols=153  Identities=19%  Similarity=0.241  Sum_probs=114.8

Q ss_pred             HHHHHHHHHHHHHHHHhcCCCh--HHHHHHHHHHhHhhhhchhhhhhhhhhccchhHHHHHHHHHHHHHHHHHHHhhhcC
Q 008096           31 LAVVGFHANMISYLTTQLHMPL--TKAANTLTNFGGTGSLTPLIGAFVADTYAGRFWTITVASIIYQIGMFSLTLSAILP  108 (577)
Q Consensus        31 ~~~~~~~~~l~~~l~~~lg~s~--~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~i~~~~~~~~~~~~  108 (577)
                      .........++.+.. +++.+.  .+.+++.+.+.+...++.++.|.++||+ |||+.+..+.....++.+.+++..+  
T Consensus        16 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~~~~~~~~~~~~~~--   91 (338)
T COG0477          16 LDLGLLSPALPLLLS-TLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRY-GRRKVLIIGLLLFLLGTLLLALAPN--   91 (338)
T ss_pred             HhcchHHHHHHHHHH-HcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccc-cchHHHHHHHHHHHHHHHHHHhCcc--
Confidence            333333344444444 444444  5889999999999999999999999998 9998888888766666666666541  


Q ss_pred             CCCCCCCCCCCcccccccchhHHHHHHHHHHHhccCCcccchhhhhhccCCC-CCchhhhhhhhhhhHHHH-HHHHHHHH
Q 008096          109 QLRPPPCQGDQVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDE-TDPKQATKTWKYFNWYYF-VMGAAVLV  186 (577)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~-~~~~~~~~r~~~~~~~~~-~~~ig~~l  186 (577)
                                        ...+.+++.|+.+|++.+...+...+++.|.+|+ ++      |+...+.... ...+|..+
T Consensus        92 ------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~  147 (338)
T COG0477          92 ------------------VGLALLLILRLLQGLGGGGLLPVASALLSEWFPEATE------RGLAVGLVTLGAGALGLAL  147 (338)
T ss_pred             ------------------chHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhH------HHHHHHHHHHHHHHHHHHH
Confidence                              2578888999999999999999999999999997 33      7888888777 57788888


Q ss_pred             HHHHHHhhccc--ccchhhhHHHHHHH
Q 008096          187 AVTVLVYIQDN--VGWNWGLGIPTVAM  211 (577)
Q Consensus       187 g~~i~~~l~~~--~gw~~~f~~~~~~~  211 (577)
                      ++.+++.+...  .+|+..|.......
T Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (338)
T COG0477         148 GPLLAGLLLGALLWGWRAAFLLAALLG  174 (338)
T ss_pred             HHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence            88777666543  57888555555443

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.28  E-value=4.3e-06  Score=85.37  Aligned_cols=144  Identities=17%  Similarity=0.224  Sum_probs=115.3

Q ss_pred             cchhhhhhHHHHHHHHHhhhhhhhhccccccCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcc
Q 008096          360 AGSMSVFTMVSMLSTIALYDRIIIPVARKFTGLDRGITFLHRMGIGFVISVLATLVAGFVEMKRKQAALAHGLVDKPHII  439 (577)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ig~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  439 (577)
                      .+.+...-++.-++..|+++.    +.+|++.|-+       |.+|+..+.++.++.++..                   
T Consensus       108 iG~LFaskA~~qllvnp~~G~----l~~~iGy~ip-------m~~Gl~vmf~sTilFafg~-------------------  157 (464)
T KOG3764|consen  108 IGLLFASKALVQLLVNPFFGN----LIDRIGYKIP-------MVAGLFVMFLSTILFAFGN-------------------  157 (464)
T ss_pred             hhHHHHHHHHHHHHhcccchh----hHHHhccccH-------HHHHHHHHHHHHHHHHHcc-------------------
Confidence            344444555555666666554    6667766655       9999999999999999887                   


Q ss_pred             ccchhhHHHHHHHHHHHHHHHHhhhhhhhhhcccCccc-HHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCCCCCCCCCC
Q 008096          440 IPISVLWLVPQYSLHGIAEAFMSVGHLEFLYDQAPESM-RSTATALFWTANSIGNYVSTLLVTLVHKFSAGPNGSNWLPD  518 (577)
Q Consensus       440 ~~~~~~~l~~~~~l~gi~~~~~~~~~~~~v~~~~P~~~-rg~~~gi~~~~~~lg~~l~~~i~~~v~~~~~~~~~~~~~~~  518 (577)
                         ++..++++-.+.|+|..+......+++++.+|++. ||+++|+....-++|-.++|.+.|.+++..      |....
T Consensus       158 ---sy~~l~vAR~LQgvgsA~~~tsglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~------Gk~aP  228 (464)
T KOG3764|consen  158 ---SYPMLFVARSLQGVGSAFADTSGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFA------GKSAP  228 (464)
T ss_pred             ---hhHHHHHHHHHhhhhHHHHHhhhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhc------CCcCc
Confidence               77788999999999999999999999999999765 799999999999999999999999998876      22223


Q ss_pred             CCCCcchhhHHHHHHHHHHHHHHHHHhhhhhcccc
Q 008096          519 NNLNKGKLEYFYWLITLLQVVNVIYYFFCAKIYTF  553 (577)
Q Consensus       519 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  553 (577)
                                 |++++.+.++-...-++..+.++.
T Consensus       229 -----------FlVL~~v~Lld~~L~l~vi~p~~~  252 (464)
T KOG3764|consen  229 -----------FLVLAIVLLLDGALQLLVIEPTEM  252 (464)
T ss_pred             -----------HHHHHHHHHHHHHHHHheeCcccc
Confidence                       889888888888777776554333

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=98.27  E-value=0.00038  Score=72.89  Aligned_cols=155  Identities=16%  Similarity=0.142  Sum_probs=101.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcC------C-----------------ChHHHHHHHHHHhHhhhhchhhhhhhhhh
Q 008096           23 FANEVCEKLAVVGFHANMISYLTTQLH------M-----------------PLTKAANTLTNFGGTGSLTPLIGAFVADT   79 (577)
Q Consensus        23 ~~~~~~~~~~~~~~~~~l~~~l~~~lg------~-----------------s~~~~~~i~~~~~~~~~~~~~~~G~laDr   79 (577)
                      .+..+|+++.|..+.+-.-.-+.++.+      .                 ..-..+.+..+-.+-..+.-+..-++.+|
T Consensus         6 w~~Gl~Nn~~yvv~lsaA~di~~~~~~~~~~~~~~~~~p~~~~~~~~~~~c~~~~t~~Vlladi~P~l~~Kl~aP~fi~~   85 (402)
T PF02487_consen    6 WLLGLCNNFLYVVMLSAAHDIVGEQKASPNSSHVDPDPPSTTLPSSSRRDCKSVSTGAVLLADILPSLLVKLIAPFFIHR   85 (402)
T ss_pred             HHHHHhcchhHhhhHHhHHHHhhccccCCCCCCCCCCCCCCcCCCccCCCCCcccchHHHHHHHHHHHHHHHHhHhhhhh
Confidence            446678888877666665444442111      0                 11123445555666777777888889998


Q ss_pred             ccchhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCcccccccchhHHHHHHHHHHHhccCCcccchhhhhhccCC
Q 008096           80 YAGRFWTITVASIIYQIGMFSLTLSAILPQLRPPPCQGDQVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFD  159 (577)
Q Consensus        80 ~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~  159 (577)
                      . ..+.-+.+..++..+|.++.+++.                      +.+.-+++..+.+++.|.......++.+ .++
T Consensus        86 v-~y~~Ri~~~~~l~~~g~l~va~~~----------------------~v~~~l~Gv~las~ssg~GE~tfL~lt~-~y~  141 (402)
T PF02487_consen   86 V-PYWIRILICVALSAAGMLLVAFSP----------------------SVWVRLLGVVLASLSSGLGEVTFLSLTH-FYG  141 (402)
T ss_pred             c-cchHHHHHHHHHHHHHHhheeecc----------------------chhHHHHHHHHHhhhhhhhHHHHHHHHH-hcC
Confidence            6 655555666667788888888765                      6777889999999999998888888755 566


Q ss_pred             CCCchhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhcccccc--hhhhHHHHHHHH
Q 008096          160 ETDPKQATKTWKYFNWYYFVMGAAVLVAVTVLVYIQDNVGW--NWGLGIPTVAMF  212 (577)
Q Consensus       160 ~~~~~~~~~r~~~~~~~~~~~~ig~~lg~~i~~~l~~~~gw--~~~f~~~~~~~~  212 (577)
                      +..          .+.+..+...++++|+..-..+.. .|+  |..+.+..++-+
T Consensus       142 ~~~----------l~~wssGTG~aGl~Ga~~y~~lT~-~g~s~~~tll~~~~lp~  185 (402)
T PF02487_consen  142 KSS----------LSAWSSGTGGAGLVGALYYLGLTT-LGLSPRTTLLIMLVLPA  185 (402)
T ss_pred             ccc----------cccccCCcChhhHHHHHHHHHHHH-hCcCHHHHHHHHHHHHH
Confidence            422          555666677777777766555554 444  556655554433

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=98.25  E-value=2.4e-05  Score=83.55  Aligned_cols=165  Identities=18%  Similarity=0.044  Sum_probs=107.3

Q ss_pred             ehHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhHhhhhchhhhhhhhhhccchhHHHHHHHHHHHHHH
Q 008096           19 MPFIFANEVCEKLAVVGFHANMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADTYAGRFWTITVASIIYQIGM   98 (577)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~lg~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~i~~   98 (577)
                      ++......++....++.....+|.++++.+|++..+.++.......+..++..+.+++.++. ++++.+.....+..++.
T Consensus       220 ~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~-~~~~~~~~~~~~~~ig~  298 (413)
T PRK15403        220 FLTGAATLSLSYIPMMSWVAVSPVILIDAGGMTTSQFAWTQVPVFGAVIVANAIVARFVKDP-TEPRFIWRAVPIQLVGL  298 (413)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhChHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccC-CchhHHHHHHHHHHHHH
Confidence            34444445556666677778889999999999999999998888888888888888876554 44454443333444444


Q ss_pred             HHHHHhhh-cCCCCCCCCCCCCcccccccchhHHHHHHHHHHHhccCCcccchhhhhhccCCCCCchhhhhhhhhhhHHH
Q 008096           99 FSLTLSAI-LPQLRPPPCQGDQVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYY  177 (577)
Q Consensus        99 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~  177 (577)
                      .++.+... .++                  ++...+++.++.++|.+...|+..+..-  .+.+.     .++++.++++
T Consensus       299 ~l~~~~~~~~~~------------------~~~~~~~~~~l~~~G~~~~~p~~~~~al--~~~~~-----~~G~a~a~~~  353 (413)
T PRK15403        299 ALLIVGNLLWPH------------------VWLWSVLGTSLYAFGIGLIFPTLFRFTL--FSNNL-----PKGTVSASLN  353 (413)
T ss_pred             HHHHHHHHHccc------------------cHHHHHHHHHHHHHHHHHHhHHHHHHHh--ccCCC-----CCcHHHHHHH
Confidence            44433210 011                  3334567888889999888888875332  22221     1567777777


Q ss_pred             HHHHHHHHHHHHHHHhhcccccchhhhHHHHHH
Q 008096          178 FVMGAAVLVAVTVLVYIQDNVGWNWGLGIPTVA  210 (577)
Q Consensus       178 ~~~~ig~~lg~~i~~~l~~~~gw~~~f~~~~~~  210 (577)
                      .....+..+++...+++... +-.++|....++
T Consensus       354 ~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~  385 (413)
T PRK15403        354 MVILMVMAVSVEIGRWLWFN-GGRLPFHLLAVV  385 (413)
T ss_pred             HHHHHHHHHHHHHHHHHHHc-CCchHHHHHHHH
Confidence            77777888888888888654 555566554443

>PRK11462 putative transporter; Provisional

Probab=98.18  E-value=2.6e-05  Score=84.48  Aligned_cols=156  Identities=12%  Similarity=0.045  Sum_probs=96.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhHhhhhchhhhhhhhhhccchhHHHHHHHHHHHHHHHHHH
Q 008096           23 FANEVCEKLAVVGFHANMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADTYAGRFWTITVASIIYQIGMFSLT  102 (577)
Q Consensus        23 ~~~~~~~~~~~~~~~~~l~~~l~~~lg~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~i~~~~~~  102 (577)
                      +...++..+...........|.+..+| +....+.+...+.++..++.+++++++||+ |+|+++..+..+..+..++..
T Consensus       234 ~~~~~~~~~~~~~~~~~~~y~~~y~~g-~~~~~~~~l~~~~i~~iig~~l~~~l~~r~-gkk~~~~~~~~~~~~~~~~~~  311 (460)
T PRK11462        234 GLLTIFNILAVCVRGGAMMYYVTWILG-TPEVFVAFLTTYCVGNLIGSALAKPLTDWK-CKVTIFWWTNALLAVISLAMF  311 (460)
T ss_pred             HHHHHHHHHHHHHHHhHhhhhhhhhcC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHHHHH
Confidence            334444444444444444444443444 344556777788888889999999999998 998887755554444333333


Q ss_pred             HhhhcCCCCCCCCCCCCcccccccchhHHHHHHHHHHHhccCCcccchhhhhhccCCCCCchh-hhhhhhhhhHHHHHHH
Q 008096          103 LSAILPQLRPPPCQGDQVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQ-ATKTWKYFNWYYFVMG  181 (577)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~~  181 (577)
                      +..   .                 .+...+++..++.|++.+...+...++++|..+.+|.+. ++..+..++.......
T Consensus       312 ~~~---~-----------------~~~~~~~~~~~l~g~~~~~~~~l~~~m~ad~~d~~e~~tG~r~~g~~~a~~~f~~K  371 (460)
T PRK11462        312 FVP---M-----------------QASITMFVFIFVIGVLHQLVTPIQWVMMSDTVDYGEWCNGKRLTGISFAGTLFVLK  371 (460)
T ss_pred             Hhc---h-----------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHhcCCCchHHHHHHHHHHHH
Confidence            221   1                 122234445566788877777777888888776443222 1113455677777889


Q ss_pred             HHHHHHHHHHHhhcccccc
Q 008096          182 AAVLVAVTVLVYIQDNVGW  200 (577)
Q Consensus       182 ig~~lg~~i~~~l~~~~gw  200 (577)
                      +|..+|+.+.|++.+..|+
T Consensus       372 lg~alg~~i~g~iL~~~Gy  390 (460)
T PRK11462        372 LGLAFGGALIGWMLAYGGY  390 (460)
T ss_pred             HHHHHHHHHHHHHHHHcCC
Confidence            9999999888877654454

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=98.11  E-value=0.00049  Score=72.07  Aligned_cols=155  Identities=10%  Similarity=0.027  Sum_probs=108.1

Q ss_pred             HHHHHHHHHh-cCCChHHHH-HHHHHHhHhhhhchhhhhhhhhhccchhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCC
Q 008096           38 ANMISYLTTQ-LHMPLTKAA-NTLTNFGGTGSLTPLIGAFVADTYAGRFWTITVASIIYQIGMFSLTLSAILPQLRPPPC  115 (577)
Q Consensus        38 ~~l~~~l~~~-lg~s~~~~~-~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  115 (577)
                      +++..|+.+. .|++..|.. -+.-...-.+....++...+.|.. |.|++++++.+...+...++.+..          
T Consensus        24 Pfl~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l-~Ykpviil~~~~~i~t~~lll~~~----------   92 (412)
T PF01770_consen   24 PFLTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYL-RYKPVIILQALSYIITWLLLLFGT----------   92 (412)
T ss_pred             ccchHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHHHHHHC----------
Confidence            6678899887 999999987 344444445666778889999987 999999999988888888877765          


Q ss_pred             CCCCcccccccchhHHHHHHHHHHHhccCCcccchhhhhhccCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhc
Q 008096          116 QGDQVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAVLVAVTVLVYIQ  195 (577)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~lg~~i~~~l~  195 (577)
                                  +...+.+.-+..|++.+. ..+..+++=...|+++      -.++.+....+.-+|-.++.+++-.+.
T Consensus        93 ------------sv~~mq~~q~~yg~~~a~-evay~sYiys~v~~~~------yq~vts~~raa~l~g~~~s~~lgQllv  153 (412)
T PF01770_consen   93 ------------SVLAMQLMQFFYGLATAA-EVAYYSYIYSVVDKEH------YQKVTSYTRAATLVGRFISSLLGQLLV  153 (412)
T ss_pred             ------------cHHHHHHHHHHHHHHHHH-HHHHHHHheeecCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                        667788888888887665 3555566655555544      445566666666666666665554443


Q ss_pred             c--cccchhhhHHHHHHHHHHHHHHHHcc
Q 008096          196 D--NVGWNWGLGIPTVAMFLSIIAFVFGY  222 (577)
Q Consensus       196 ~--~~gw~~~f~~~~~~~~~~~~~~~~~~  222 (577)
                      .  ..+++...++......+++++.++.+
T Consensus       154 s~~~~sy~~L~~isl~~~~~a~~~~~fLP  182 (412)
T PF01770_consen  154 SFGGVSYFQLNYISLASVSLALLIALFLP  182 (412)
T ss_pred             HhcCCCHHHHHHHHHHHHHHHHHHHHHcC
Confidence            3  34566666777776666666555443

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=98.08  E-value=0.00011  Score=76.21  Aligned_cols=155  Identities=13%  Similarity=0.159  Sum_probs=127.1

Q ss_pred             HHHHHHhcCCChHHHHHHHHHHhHhhhhchhhhhhhhhhccchhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCc
Q 008096           41 ISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADTYAGRFWTITVASIIYQIGMFSLTLSAILPQLRPPPCQGDQV  120 (577)
Q Consensus        41 ~~~l~~~lg~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  120 (577)
                      =+|--+.||+|..|..-+......+..++-...|++..|..+.+++..+++....++..+..++...             
T Consensus       232 EPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~-------------  298 (403)
T PF03209_consen  232 EPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGPL-------------  298 (403)
T ss_pred             CCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhc-------------
Confidence            3444446899999999999999999999999999998865588999999999999998888877622             


Q ss_pred             ccccccchhHHHHHHHHHHHhccCCcccchhhhhhccCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhccc---
Q 008096          121 CKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAVLVAVTVLVYIQDN---  197 (577)
Q Consensus       121 ~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~lg~~i~~~l~~~---  197 (577)
                            ++.+.+..+.++.|+|.|.+.....+...|+.++++      -+.++|....+..++..+|..++|.+.|.   
T Consensus       299 ------~~~~~~~~~~~l~G~g~G~f~vgals~mM~lt~~~~------aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~~  366 (403)
T PF03209_consen  299 ------GSPWLFRPGVFLLGLGNGLFTVGALSLMMDLTSAGR------AGLFMGAWGAAQAIARGLGTFLGGALRDLVRA  366 (403)
T ss_pred             ------ccchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCcc------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                  257889999999999999999999999999998877      78999999999999999988888765431   


Q ss_pred             -------ccchhhhHHHHHHHHHHHHHHHH
Q 008096          198 -------VGWNWGLGIPTVAMFLSIIAFVF  220 (577)
Q Consensus       198 -------~gw~~~f~~~~~~~~~~~~~~~~  220 (577)
                             .+|...|.+-++.++++++++..
T Consensus       367 ~~~~~~~~aY~~VF~lEa~ll~~a~~ll~~  396 (403)
T PF03209_consen  367 LFGNSPALAYGVVFALEAVLLLAALVLLGR  396 (403)
T ss_pred             hccCCcchHHHHHHHHHHHHHHHHHHHHHH
Confidence                   35667777777776666655443

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=98.07  E-value=3.2e-05  Score=84.69  Aligned_cols=178  Identities=13%  Similarity=0.014  Sum_probs=116.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHh--cCCCh------HHHHHHHHHHhHhhhhchhhh----hhhhhhccchhHHHHHHHHH
Q 008096           26 EVCEKLAVVGFHANMISYLTTQ--LHMPL------TKAANTLTNFGGTGSLTPLIG----AFVADTYAGRFWTITVASII   93 (577)
Q Consensus        26 ~~~~~~~~~~~~~~l~~~l~~~--lg~s~------~~~~~i~~~~~~~~~~~~~~~----G~laDr~~Grk~~~~~~~~~   93 (577)
                      .+.....+|.+..-++.++..+  .+.+.      ...+++.+.-.+...+..++.    +++.||+ +..+.+.+|+++
T Consensus       281 ~~~~~i~f~~~~~q~~~~l~~~~~~~~~~~~~g~~i~~~~~~s~n~i~iil~~p~~~~~~~~l~~r~-~~~~~~~~G~~l  359 (500)
T PRK09584        281 LMLEAIIFFVLYSQMPTSLNFFAIRNVEHSILGIAVEPEQYQALNPFWIMIGSPILAAIYNKMGDRL-PMPHKFAIGMVL  359 (500)
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHhccccccceEECHHHHHHHhHHHHHHHHHHHHHHHHHhCcCC-CcHHHHHHHHHH
Confidence            3355556666666666665531  11111      124555555555555665665    6667775 677889999999


Q ss_pred             HHHHHHHHHHhhhcCCCCCCCCCCCCcccccccchhHHHHHHHHHHHhccCCcccchhhhhhccCCCCCchhhhhhhhhh
Q 008096           94 YQIGMFSLTLSAILPQLRPPPCQGDQVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYF  173 (577)
Q Consensus        94 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  173 (577)
                      .+++.+.++++.....             .....+.+.++...+++++|+++..|...+++.+..|++.      |++++
T Consensus       360 ~~l~f~~l~~~~~~~~-------------~~~~vs~~~~~~~~~l~~~ge~~~~p~g~s~~~~~aP~~~------rg~~~  420 (500)
T PRK09584        360 CSGAFLVLPLGAKFAN-------------DAGIVSVNWLIASYGLQSIGELMISGLGLAMVAQLVPQRL------MGFIM  420 (500)
T ss_pred             HHHHHHHHHHHHHhcC-------------CCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCcHHH------HHHHH
Confidence            9999988887653221             0012346678889999999999999999999999999887      99999


Q ss_pred             hHHHHHHHHHHHHHHHHHHhhcc----------cccchhhhHHHHHHHHHHHHHHHHccc
Q 008096          174 NWYYFVMGAAVLVAVTVLVYIQD----------NVGWNWGLGIPTVAMFLSIIAFVFGYP  223 (577)
Q Consensus       174 ~~~~~~~~ig~~lg~~i~~~l~~----------~~gw~~~f~~~~~~~~~~~~~~~~~~~  223 (577)
                      |.+..+..+|..++..+......          ..++...|...++..++..++++...+
T Consensus       421 g~~~l~~a~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~a~~~~~~~~  480 (500)
T PRK09584        421 GSWFLTTAGAALIAGYVANLMAVPDNVTDPLMSLEVYGRVFLQIGIATAVIAVLMLLTAP  480 (500)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99888877777777666543221          113556665555554433333344333

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=98.07  E-value=1.7e-05  Score=86.62  Aligned_cols=149  Identities=11%  Similarity=0.062  Sum_probs=104.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCh----HHHHHHHHHHhHhhhhchhhhhhhhhhccchhH-------HHHHHHHHH
Q 008096           26 EVCEKLAVVGFHANMISYLTTQLHMPL----TKAANTLTNFGGTGSLTPLIGAFVADTYAGRFW-------TITVASIIY   94 (577)
Q Consensus        26 ~~~~~~~~~~~~~~l~~~l~~~lg~s~----~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grk~-------~~~~~~~~~   94 (577)
                      ..+....+......++.|.++..+.+.    -..+++.+...+...+..++.|++.||+ ++|+       -+.+|+++.
T Consensus       278 ~~~f~~~~~q~~~~l~l~~~~~~~~~~~G~~i~~~~~~~~n~~~iii~~pl~~~l~~rl-~~r~~~~~~~~k~~~G~~l~  356 (489)
T PRK10207        278 AVVFYILYAQMPTSLNFFAINNVHHEILGFSINPVSFQALNPFWVVVASPILAGIYTHL-GSKGKDLSMPMKFTLGMFLC  356 (489)
T ss_pred             HHHHHHHHHHcccHHHHHHHHhccccccceEECHHHHHhHhHHHHHHHHHHHHHHHHHH-hhCCCCCCcHHHHHHHHHHH
Confidence            444555555565778888875433211    0234454555566667888889999998 8886       377788887


Q ss_pred             HHHHHHHHHhhh-cCCCCCCCCCCCCcccccccchhHHHHHHHHHHHhccCCcccchhhhhhccCCCCCchhhhhhhhhh
Q 008096           95 QIGMFSLTLSAI-LPQLRPPPCQGDQVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYF  173 (577)
Q Consensus        95 ~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  173 (577)
                      .++.+.++.... ...             .....+.+.+....+++|+|+++..|...+++.+..|++.      ++.++
T Consensus       357 ~~~~~~~~~~~~~~~~-------------~~~~~s~~~~i~~~~l~g~Ge~~~~~~g~~~~~~~aP~~~------~g~~~  417 (489)
T PRK10207        357 SLGFLTAAAAGMWFAD-------------AQGLTSPWFIVLVYLFQSLGELFISALGLAMIAALVPQHL------MGFIL  417 (489)
T ss_pred             HHHHHHHHHHHHhhcC-------------CCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhChHHH------HHHHH
Confidence            777665432210 000             0011245667788889999999999999999999999877      89999


Q ss_pred             hHHHHHHHHHHHHHHHHHHhh
Q 008096          174 NWYYFVMGAAVLVAVTVLVYI  194 (577)
Q Consensus       174 ~~~~~~~~ig~~lg~~i~~~l  194 (577)
                      ++++...++|..+|..+....
T Consensus       418 g~~~l~~~ig~~lg~~l~~~~  438 (489)
T PRK10207        418 GMWFLTQAAAFLLGGYVATFT  438 (489)
T ss_pred             HHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999998777655

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=98.06  E-value=1.8e-05  Score=82.30  Aligned_cols=167  Identities=14%  Similarity=0.111  Sum_probs=126.0

Q ss_pred             ceehHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhHhhhhchhhhhhhhhhc---cchhHH-HHHHHH
Q 008096           17 ITMPFIFANEVCEKLAVVGFHANMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADTY---AGRFWT-ITVASI   92 (577)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~lg~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~---~Grk~~-~~~~~~   92 (577)
                      +.+..+..+.+...+.+-.=..++++|++ .+|.+.+-.+.+.....+.+.+.+++.|..+||.   +||||. +..+.+
T Consensus        32 ~~li~v~~ia~Gvqf~wA~elsy~tPyl~-~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~  110 (498)
T KOG0637|consen   32 RKLISVASIAAGVQFGWALELSYLTPYLQ-SLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSL  110 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccccHHHH-HcCCCcccccccccccccccceecccccccccccccccccccchHHHhhH
Confidence            45555555666677777677788899986 8899999999999999999999999999999984   376665 555666


Q ss_pred             HHHHHHHHHHHhhhcCCCCCCCCCCCCcccccccchhHHHHHHHHHHHhccCCcccchhhhhhccCCCCCchhhhhhhhh
Q 008096           93 IYQIGMFSLTLSAILPQLRPPPCQGDQVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKY  172 (577)
Q Consensus        93 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~  172 (577)
                      ..+++.+++.++..+...+.   +  +......+-....++++..+.=++.-..+..+-++++|+..++++++   |  +
T Consensus       111 ~i~~~l~Lig~aaDig~~lg---d--~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~---~--A  180 (498)
T KOG0637|consen  111 LIAVSLFLIGYAADIGLLLG---D--NERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKT---R--A  180 (498)
T ss_pred             HHHHHHhhhhhHhhhhHHhc---C--CcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhh---c--c
Confidence            67788888888765544221   1  22222333466778888888888888888999999999997665222   3  7


Q ss_pred             hhHHHHHHHHHHHHHHHHHHhh
Q 008096          173 FNWYYFVMGAAVLVAVTVLVYI  194 (577)
Q Consensus       173 ~~~~~~~~~ig~~lg~~i~~~l  194 (577)
                      .+.+.....+|+.+|..++++.
T Consensus       181 ns~f~~f~avGnvLGY~~g~y~  202 (498)
T KOG0637|consen  181 NSVFSFFMAVGNVLGYALGSYL  202 (498)
T ss_pred             chhHHHHHHhcceeeeeccccc
Confidence            8889899999999998877744

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=98.04  E-value=0.00011  Score=79.40  Aligned_cols=204  Identities=11%  Similarity=-0.043  Sum_probs=145.5

Q ss_pred             CCCcceehHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCh------HH----HHHHHHHHhHhhhhchhhhhhhhhhcc
Q 008096           13 KGGIITMPFIFANEVCEKLAVVGFHANMISYLTTQ-LHMPL------TK----AANTLTNFGGTGSLTPLIGAFVADTYA   81 (577)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-lg~s~------~~----~~~i~~~~~~~~~~~~~~~G~laDr~~   81 (577)
                      |.-++.++.+..++++.+++++.+..+...|+.++ ++-++      .+    ..+....+.+...+.+++.-++.+|+ 
T Consensus       254 ~~mP~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~s~~~~i~s~~l~~l~~~~-  332 (477)
T TIGR01301       254 KYLPRPVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLMLNSVVLGITSIGMEKLCRGW-  332 (477)
T ss_pred             HHCCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-
Confidence            66678888988999999999999999999999754 44322      11    23455555556567777788889998 


Q ss_pred             c-hhHHHHHHHHHHHHHHHHHHHhhhcCC-CCCCCCCCCCcc-cccccchhHHHHHHHHHHHhccCCcccchhhhhhccC
Q 008096           82 G-RFWTITVASIIYQIGMFSLTLSAILPQ-LRPPPCQGDQVC-KEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQF  158 (577)
Q Consensus        82 G-rk~~~~~~~~~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~  158 (577)
                      | ||++..++.++.+++.....+..++++ .++   +++... ........+..++...+.|+..+.....-.+++++..
T Consensus       333 g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~~~Gi~~A~~~siPfal~s~~~  409 (477)
T TIGR01301       333 GAGKRLWGIVNIILAICLAATVLVTYVAKNSRY---YDGDGESLPPPTGIKASALIVFAILGIPLAITYSIPFALASIRS  409 (477)
T ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHhhhhcccc---ccccccccCcchhhHHHHHHHHHHhhHHHHHHHHHhHHHHHHHc
Confidence            8 477778898888888888877653221 000   000000 0001112466777788899999999999999999999


Q ss_pred             CCCCchhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhccccc--chhhhHHHHHHHHHHHHHHHHcccc
Q 008096          159 DETDPKQATKTWKYFNWYYFVMGAAVLVAVTVLVYIQDNVG--WNWGLGIPTVAMFLSIIAFVFGYPL  224 (577)
Q Consensus       159 ~~~~~~~~~~r~~~~~~~~~~~~ig~~lg~~i~~~l~~~~g--w~~~f~~~~~~~~~~~~~~~~~~~~  224 (577)
                      +++.    ++.|..+|+++.+..+.+++..+..|.+.+.+|  -.+++.+.++.++++.++..+..|+
T Consensus       410 ~~~~----~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~~~~~~~~~  473 (477)
T TIGR01301       410 SNLG----AGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLLALILLPR  473 (477)
T ss_pred             cccC----CCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHHHHHHhCCC
Confidence            8532    126899999999999999999988887655554  4567788888888887777766665

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=98.01  E-value=0.00022  Score=69.12  Aligned_cols=93  Identities=15%  Similarity=0.132  Sum_probs=69.8

Q ss_pred             HHHHhcCCChHHHHHHHHHHhHhhhhchhhhhhhhhhccchhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCccc
Q 008096           43 YLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADTYAGRFWTITVASIIYQIGMFSLTLSAILPQLRPPPCQGDQVCK  122 (577)
Q Consensus        43 ~l~~~lg~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (577)
                      |+-.++|+-..|++.+........+++..+.|-++|+- |||+..+.-++.    .+++.+..                 
T Consensus        62 yLYstYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDkq-GRKracvtycit----YiLsCiTK-----------------  119 (454)
T KOG4332|consen   62 YLYSTYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQ-GRKRACVTYCIT----YILSCITK-----------------  119 (454)
T ss_pred             eeehhcCccCCccceeeecccchHHHHHHHHHHHHhhh-ccccceeeehHH----HHHHHHhh-----------------
Confidence            45557788899999988888888889999999999997 999976655443    34444443                 


Q ss_pred             ccccchhHHHHHHHHHHHhccCCcccchhhh-hhccCC
Q 008096          123 EADTGQLAILYASLLLAALGSGGIRPCVVAF-GADQFD  159 (577)
Q Consensus       123 ~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~-~~~~~~  159 (577)
                        .++.+..++++|.+-|+.....+++--+. ++|...
T Consensus       120 --hSpqYkVLmVGR~LGGiaTsLLFSaFEsWliaEHne  155 (454)
T KOG4332|consen  120 --HSPQYKVLMVGRVLGGIATSLLFSAFESWLIAEHNE  155 (454)
T ss_pred             --cCCceEEEeehhhhhhHHHHHHHHHHHHHHHHHhhh
Confidence              23467789999999999988877766554 455553

>TIGR00788 fbt folate/biopterin transporter

Probab=98.01  E-value=8.4e-06  Score=88.53  Aligned_cols=145  Identities=9%  Similarity=-0.119  Sum_probs=112.2

Q ss_pred             HHhcCCChHHHHHHHHHHhHhhhhchhhhhhhhhhccchhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCccccc
Q 008096           45 TTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADTYAGRFWTITVASIIYQIGMFSLTLSAILPQLRPPPCQGDQVCKEA  124 (577)
Q Consensus        45 ~~~lg~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  124 (577)
                      ++.+|+|+.+.|.+.....++..++..+.+++.+|+ +.|+++.++.++..++.+...+...-..+            ..
T Consensus       280 ~~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~-~~r~~l~~~~~l~~~~~~~~~~l~~~~~~------------~~  346 (468)
T TIGR00788       280 TQCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTF-PYRLLFGVTTLLYTLSSLFDLILVKRWNL------------AF  346 (468)
T ss_pred             cccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhC-CHHHHHHHHHHHHHHHHhCceeeeecccc------------cc
Confidence            356899999999999999999999999999999998 99999999998888876554321100000            00


Q ss_pred             ccchhHHHHHHHHHHHhccCCcccchhhhhhccCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhccccc-----
Q 008096          125 DTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAVLVAVTVLVYIQDNVG-----  199 (577)
Q Consensus       125 ~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~lg~~i~~~l~~~~g-----  199 (577)
                      ...+.+.+...-++.+++.+........++.+..|++.      ++..++++....++|..+++.+++++.+..|     
T Consensus       347 gi~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~p~~~------egt~~al~~s~~~lg~~v~~~~gg~l~~~~g~~~~~  420 (468)
T TIGR00788       347 GISDEVFVLGDSIIAEVLAQLKFMPFLVLLARLCPSGC------ESSVFALLASILHLGSSVSGFLGVLLMETIGITCDN  420 (468)
T ss_pred             CCCCeeeeeehhHHHHHHHHHHHccHHHHHHHhCCCCc------eehHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccc
Confidence            00123344555677888888888899999999999988      8999999999999999999999999988776     


Q ss_pred             chhhhHHHH
Q 008096          200 WNWGLGIPT  208 (577)
Q Consensus       200 w~~~f~~~~  208 (577)
                      ++..+....
T Consensus       421 ~~~~~~~i~  429 (468)
T TIGR00788       421 SNNLWLLIL  429 (468)
T ss_pred             ccchHHHHH
Confidence            554444333

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>TIGR00805 oat sodium-independent organic anion transporter

Probab=97.98  E-value=4.2e-05  Score=86.11  Aligned_cols=137  Identities=14%  Similarity=0.103  Sum_probs=95.4

Q ss_pred             cchhhhhhHHHHHHHHHhhhhhhhhccccccCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHH-------------H
Q 008096          360 AGSMSVFTMVSMLSTIALYDRIIIPVARKFTGLDRGITFLHRMGIGFVISVLATLVAGFVEMKRKQ-------------A  426 (577)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ig~~~~~l~~~~~~~~~~~~~~-------------~  426 (577)
                      .+.+.+...++..+..+++++    +++|.+||+.       +.+|+++++++.++.++..-..+.             .
T Consensus        70 ~G~i~s~~~i~~~~~~i~v~~----~~~r~~r~~~-------i~~g~ll~~lg~ll~alphf~~~~y~~~~~~~~~~~~~  138 (633)
T TIGR00805        70 SGLINGSYEIGNLLLIIFVSY----FGTKLHRPIV-------IGIGCAIMGLGSFLLSLPHFLSGRYSYSTTVSSTGNLS  138 (633)
T ss_pred             ceeeeehhhHHHHHHHHHHHH----hhcccCcceE-------EEecHHHHHHHHHHHhChHHhcCCcccccccccccccc
Confidence            456666677777777777665    6677665544       788888888888776543200000             0


Q ss_pred             HHhcCCCCCC------------Cccc----cchhhHHHHHHHHHHHHHHHHhhhhhhhhhcccCcccHHHHHHHHHHHHh
Q 008096          427 ALAHGLVDKP------------HIII----PISVLWLVPQYSLHGIAEAFMSVGHLEFLYDQAPESMRSTATALFWTANS  490 (577)
Q Consensus       427 ~~~~~~~~~~------------~~~~----~~~~~~l~~~~~l~gi~~~~~~~~~~~~v~~~~P~~~rg~~~gi~~~~~~  490 (577)
                      ...+.+|+..            .+..    ...+..+++.-++.|+|.+...+....++.|.+|++.|+.+.|+.+....
T Consensus       139 ~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i~~~~~~  218 (633)
T TIGR00805       139 SANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGILESIAV  218 (633)
T ss_pred             ccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccccHHHHHHHHHHHH
Confidence            0011223100            0000    12345566788999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhhc
Q 008096          491 IGNYVSTLLVTLVHKFS  507 (577)
Q Consensus       491 lg~~l~~~i~~~v~~~~  507 (577)
                      +|..+|+.+.+.+.+..
T Consensus       219 iG~~lG~llgg~l~~~~  235 (633)
T TIGR00805       219 FGPAFGYLLGSFCLQIY  235 (633)
T ss_pred             hhhHHHHHHHHHHHhcc
Confidence            99999999999887644

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=97.93  E-value=0.0018  Score=68.86  Aligned_cols=187  Identities=9%  Similarity=-0.076  Sum_probs=107.5

Q ss_pred             ehHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhHhhhhchhhhhhhhhhccchhHHHHHHHHHHHHHH
Q 008096           19 MPFIFANEVCEKLAVVGFHANMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADTYAGRFWTITVASIIYQIGM   98 (577)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~lg~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~i~~   98 (577)
                      .+.+....++.++.--+...-.+.|+.+-+.-+.--.+.....-.+...++.+..|...||. -|.+++..+.+..-++.
T Consensus         4 ~~~Ly~sh~ls~w~dR~w~Fa~~L~L~~i~p~sLl~~siygl~~~~~~~~f~~~vG~~iD~~-~Rl~~~~~~l~~Qn~sv   82 (432)
T PF06963_consen    4 LWRLYLSHFLSTWGDRMWEFAVPLFLISIFPGSLLPVSIYGLVRSLSAILFGPWVGRWIDRS-PRLKVIRTSLVVQNLSV   82 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhhHHHHHHHhCC-cchhhHHHHHHHHHHHH
Confidence            45556666666666666666677888877655666666666667778888899999999998 99999888776654433


Q ss_pred             HHHHHh----hhcCCCCCCCCCCCCcccccccchhHHHHHH-HHHHHhccCCcccchhhhhhccCCCCCchhhhhhhhhh
Q 008096           99 FSLTLS----AILPQLRPPPCQGDQVCKEADTGQLAILYAS-LLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYF  173 (577)
Q Consensus        99 ~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  173 (577)
                      ...+..    -..+.   .        ...+......+++. .++..+..=.......+.=-|+...=..+++..+.+..
T Consensus        83 ~~s~~~~~~l~~~~~---~--------~~~~~~~~~~l~~~~~~~~~i~~Las~~~~iavERDWVvvi~~~~~~~La~~N  151 (432)
T PF06963_consen   83 AASCALFLLLLSYPS---S--------SSQSSWLFIALFALLILLGAIERLASIANTIAVERDWVVVIAGGDPGALARMN  151 (432)
T ss_pred             HHHHHHHHHHHhCCc---c--------ccccchHHHHHHHHHHHHHHHHHHHHhhhhheeccchhhhhcCCChhhHHHHH
Confidence            332221    10110   0        00001112222222 22222222222222333334444321111122255555


Q ss_pred             hHHHHHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHHHHHH
Q 008096          174 NWYYFVMGAAVLVAVTVLVYIQDNVGWNWGLGIPTVAMFLSIIA  217 (577)
Q Consensus       174 ~~~~~~~~ig~~lg~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~  217 (577)
                      +...---.+--++||++.|.+....|...+.++.+...++++.+
T Consensus       152 A~mRRIDL~ckllaPl~vG~l~t~~s~~~~~~~i~~~N~~S~~v  195 (432)
T PF06963_consen  152 ATMRRIDLFCKLLAPLFVGLLMTFASPVIAAIFIAGWNLASVFV  195 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHH
Confidence            55544456689999999999988888887777777776666665

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>TIGR00806 rfc RFC reduced folate carrier

Probab=97.92  E-value=0.00026  Score=75.35  Aligned_cols=101  Identities=16%  Similarity=0.072  Sum_probs=82.4

Q ss_pred             HHHHHHHHhhhhhhhhccccccCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccccchhhHHH
Q 008096          369 VSMLSTIALYDRIIIPVARKFTGLDRGITFLHRMGIGFVISVLATLVAGFVEMKRKQAALAHGLVDKPHIIIPISVLWLV  448 (577)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ig~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  448 (577)
                      .+-.+.....++    +.||++-|+.       +.++++...+..++.++..                      +...+.
T Consensus        73 ysYal~qIp~Gl----LaDrlG~K~v-------L~l~~l~Wsl~t~L~~fa~----------------------Sl~~L~  119 (511)
T TIGR00806        73 YSHLAVLVPVFL----LTDYLRYKPV-------LVLQALSFVCVWLLLLLGT----------------------SVWHMQ  119 (511)
T ss_pred             HHHHHHHHHHHH----HHHHhCchHH-------HHHHHHHHHHHHHHHHHHH----------------------HHHHHH
Confidence            333444444444    6666654443       7888888888888877765                      677888


Q ss_pred             HHHHHHHHHHHHHhhhhhhhhhcccCcccHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 008096          449 PQYSLHGIAEAFMSVGHLEFLYDQAPESMRSTATALFWTANSIGNYVSTLLVTLV  503 (577)
Q Consensus       449 ~~~~l~gi~~~~~~~~~~~~v~~~~P~~~rg~~~gi~~~~~~lg~~l~~~i~~~v  503 (577)
                      +.-+++|++++... ..+.++.+.+|++.|++++|+++.+..+|.++++.+.+.+
T Consensus       120 i~R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll  173 (511)
T TIGR00806       120 LMEVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLL  173 (511)
T ss_pred             HHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88999999999999 9999999999999999999999999999999999998884

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=97.90  E-value=0.00015  Score=74.71  Aligned_cols=139  Identities=14%  Similarity=0.102  Sum_probs=106.8

Q ss_pred             HHHHHHHHHHHHhcCCChHHHHHHHHHHhHhhhhchhhhhhhhhhccchhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCC
Q 008096           35 GFHANMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADTYAGRFWTITVASIIYQIGMFSLTLSAILPQLRPPP  114 (577)
Q Consensus        35 ~~~~~l~~~l~~~lg~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  114 (577)
                      .+-.+++.|+.+..|++..+++...+.+..+.+++..++-++-.|+ ...|.+.+..++..+-.+..+++.         
T Consensus       254 a~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~-~~~k~Laf~a~~~ill~~~~~l~~---------  323 (422)
T COG0738         254 AIGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRI-KPEKYLAFYALIAILLLLAVALIG---------  323 (422)
T ss_pred             HHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHHHHHHHhc---------
Confidence            3447889999988999999999999999999999999999999998 888887777655544444444443         


Q ss_pred             CCCCCcccccccchhHHHHHHHHHHHhccCCcccchhhhhhccCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHHHHHhh
Q 008096          115 CQGDQVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAVLVAVTVLVYI  194 (577)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~lg~~i~~~l  194 (577)
                                   + ..-+.+.++.|+..+..+|...+...+-.|++.        ...+..-...-.|+.+-|.+.|++
T Consensus       324 -------------g-~v~~~~l~~ig~F~simfPTIfslal~~l~~~t--------s~~s~~l~maivGGAiiP~l~G~i  381 (422)
T COG0738         324 -------------G-VVALYALFLIGLFNSIMFPTIFSLALKNLGEHT--------SVGSGLLVMAIVGGAIIPPLQGVI  381 (422)
T ss_pred             -------------C-hHHHHHHHHHHHHhHHHHHHHHHHHHhccCccc--------cccceeeeeheecchHHHHHHHHH
Confidence                         2 334456678899999999999999999999433        112222223457889999999999


Q ss_pred             cccccchhhhH
Q 008096          195 QDNVGWNWGLG  205 (577)
Q Consensus       195 ~~~~gw~~~f~  205 (577)
                      .|..|-...+.
T Consensus       382 ~d~~g~~~~~~  392 (422)
T COG0738         382 ADMFGIQLTFL  392 (422)
T ss_pred             HHhhhhHHHHH
Confidence            99988776665

>PF12832 MFS_1_like: MFS_1 like family

Probab=97.90  E-value=7.4e-05  Score=59.39  Aligned_cols=67  Identities=19%  Similarity=0.117  Sum_probs=56.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhHhhhhchhhhhhhhhhccchhHHHHHHHHH
Q 008096           25 NEVCEKLAVVGFHANMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADTYAGRFWTITVASII   93 (577)
Q Consensus        25 ~~~~~~~~~~~~~~~l~~~l~~~lg~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~   93 (577)
                      ..++...+...+.++++.|++ +.|+|..|+|.+.++..+...+++++.|.++||+ ++++.+.....+
T Consensus         8 ~yf~~f~~~g~~~Pfl~~~~~-~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~-~~~~~~l~~~~~   74 (77)
T PF12832_consen    8 FYFFYFAALGCLYPFLPLYLK-QLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKF-GKRKVILLGSLF   74 (77)
T ss_pred             HHHHHHHHHHHHHhhhhHhhh-hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CccHHHHHHHHH
Confidence            455555666678899999997 6999999999999999999999999999999999 888877665543

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=97.89  E-value=1.7e-07  Score=101.10  Aligned_cols=187  Identities=14%  Similarity=0.088  Sum_probs=115.7

Q ss_pred             ceehHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhHhhhhchhhhhhhhhhccchhHHHHHHHHHHHH
Q 008096           17 ITMPFIFANEVCEKLAVVGFHANMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADTYAGRFWTITVASIIYQI   96 (577)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~lg~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~i   96 (577)
                      +.....+....+..+..+....+...++.+..+.+..  -.......+...++.+++.++.||+ |||+.++.+.++.++
T Consensus       252 ~~~~~~~~l~~~~~~~g~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-GRr~~~i~~~~~~~~  328 (451)
T PF00083_consen  252 KRLLIALLLQFFQQFSGINFIFYYSPSIFENAGISNS--FLATLILGLVNFLGTLLAIFLIDRF-GRRKLLIIGLLLMAI  328 (451)
T ss_pred             ccccccccccccccccccccccccccccccccccccc--ccccccccccccccccccccccccc-ccccccccccccccc
Confidence            4444445555555555444555555566667777776  3333344566667778888999998 999999999988887


Q ss_pred             HHHHHH-HhhhcCCCCCCCCCCCCcccccccchhHHHHHHHHHHHhccCCcccchhhhhhccCCCCCchhhhhhhhhhhH
Q 008096           97 GMFSLT-LSAILPQLRPPPCQGDQVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNW  175 (577)
Q Consensus        97 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  175 (577)
                      +.+.++ .....+.  .+           ...+...+............+..+....+.+|.+|.+.      |+++.++
T Consensus       329 ~~~~~~~~~~~~~~--~~-----------~~~~~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~------R~~~~~~  389 (451)
T PF00083_consen  329 CSLILGIIFFLGVS--SS-----------SWWSILSIVFLALFFAFFSLGWGPLPWIYTAELFPTKV------RSTGIGL  389 (451)
T ss_pred             cccccccccccccc--cc-----------cccccccceeeeeccccccccccccccccccccccccc------ccccccc
Confidence            776665 1110010  00           00012111111111112222445777788999999988      9999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHHHHHHHHHccccc
Q 008096          176 YYFVMGAAVLVAVTVLVYIQDNVGWNWGLGIPTVAMFLSIIAFVFGYPLY  225 (577)
Q Consensus       176 ~~~~~~ig~~lg~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~  225 (577)
                      .+....++.++++.+...+.+..+-...+.+.+..+++..+..+...|++
T Consensus       390 ~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~i~~i~~~~~lpET  439 (451)
T PF00083_consen  390 SYAVGRIGGFIIPFLFPYLFNNLGGWGVFLIFAGVCLIAIIFVYFFLPET  439 (451)
T ss_pred             ccccccccccccccccccccccccccccchhhHHHHHHHHhheeEEEeeC
Confidence            99988999999988888887776623445555555555555555555543

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]

Probab=97.87  E-value=0.0033  Score=64.18  Aligned_cols=156  Identities=15%  Similarity=0.089  Sum_probs=93.2

Q ss_pred             CCCcceehHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhHhhhh--chhhhhhhhh-----hccchhH
Q 008096           13 KGGIITMPFIFANEVCEKLAVVGFHANMISYLTTQLHMPLTKAANTLTNFGGTGSL--TPLIGAFVAD-----TYAGRFW   85 (577)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~lg~s~~~~~~i~~~~~~~~~~--~~~~~G~laD-----r~~Grk~   85 (577)
                      |+-++++.++++.......- +|....+|..++ .-|.|-++.+...    +.+..  .-+++..+.|     |+ ||||
T Consensus        27 ~~d~~~illLl~LYllQGiP-~GL~~~iP~lL~-ak~vSyt~~a~fS----~ay~P~sLKllWaPiVDs~y~k~~-Grrk   99 (510)
T KOG3574|consen   27 KGDRSSILLLLFLYLLQGIP-LGLIGAIPLLLQ-AKGVSYTSQAIFS----FAYWPFSLKLLWAPIVDSVYSKRF-GRRK   99 (510)
T ss_pred             hhhhhhHHHHHHHHHHcCCc-hhHhhhhHHHhc-CCCcchhhhhhhh----hhhhHHHHHHHHHhhhHHHHHHhh-cccc
Confidence            55567777877777776654 566666666665 5677777665432    22222  2356677777     87 9999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCcccccccchhHHHHHHHHHHHhccCCcccchhhhhhccCCCCCchh
Q 008096           86 TITVASIIYQIGMFSLTLSAILPQLRPPPCQGDQVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQ  165 (577)
Q Consensus        86 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~  165 (577)
                      .-++=+ -+.+|.++..++-..+...        .+... .++...+....++.-+..+.-=.+.....-.+..+++   
T Consensus       100 sWvvp~-q~llG~~mllLs~~v~~~~--------g~ng~-~p~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~e~---  166 (510)
T KOG3574|consen  100 SWVVPC-QYLLGLFMLLLSYLVDRGL--------GGNGG-LPNVVALTLLFLLLNFLAATQDIAVDGWALTMLSREN---  166 (510)
T ss_pred             ceeeeh-HHHHHHHHHHHhhCCCccc--------ccCCC-CcchHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCHhh---
Confidence            644322 1234445555554222211        11111 2234444445566666666655666777777777777   


Q ss_pred             hhhhhhhhhHHHHHHHHHHHHHHHHH
Q 008096          166 ATKTWKYFNWYYFVMGAAVLVAVTVL  191 (577)
Q Consensus       166 ~~~r~~~~~~~~~~~~ig~~lg~~i~  191 (577)
                         .+.+......+.+.|.+++..+.
T Consensus       167 ---lgyaST~q~Vg~~~GyfL~~~if  189 (510)
T KOG3574|consen  167 ---LGYASTCQSVGQTAGYFLGNVVF  189 (510)
T ss_pred             ---cCchhHHHHHHHhhhHHhhccee
Confidence               77888888888888888887654

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=97.80  E-value=0.00012  Score=79.46  Aligned_cols=133  Identities=12%  Similarity=0.116  Sum_probs=85.2

Q ss_pred             hHHHHHHHHHhhhhhhhhccccc-cCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccccchhh
Q 008096          367 TMVSMLSTIALYDRIIIPVARKF-TGLDRGITFLHRMGIGFVISVLATLVAGFVEMKRKQAALAHGLVDKPHIIIPISVL  445 (577)
Q Consensus       367 ~~~~~~~~~~~~~~~~~~~~~r~-~~~~~~~~~~~~~~ig~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  445 (577)
                      ......++.++.++    +.||+ ++|+.       +.+|.++.+++.+++....                     .+..
T Consensus        54 ~~~~~~l~~ligG~----LaDRilGrrr~-------iliG~il~~lg~lll~~~~---------------------~~~~  101 (493)
T PRK15462         54 YCSLVYVTPILGGF----LADKVLGNRMA-------VMLGALLMAIGHVVLGASE---------------------IHPS  101 (493)
T ss_pred             HHHHHHHHHHHHHH----HHHHccCcHHH-------HHHHHHHHHHHHHHHHHhh---------------------cchh
Confidence            33444555555555    56665 44433       7788888877765544221                     1112


Q ss_pred             HHHHHHHHHHHHHHHHhhhhhhhhhcccCcc--cHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCCc
Q 008096          446 WLVPQYSLHGIAEAFMSVGHLEFLYDQAPES--MRSTATALFWTANSIGNYVSTLLVTLVHKFSAGPNGSNWLPDNNLNK  523 (577)
Q Consensus       446 ~l~~~~~l~gi~~~~~~~~~~~~v~~~~P~~--~rg~~~gi~~~~~~lg~~l~~~i~~~v~~~~~~~~~~~~~~~~~~~~  523 (577)
                      .+.....+..+|.+...+....++.|..|++  .|.++.+++.+..++|+.++|.+.+.+.+..                
T Consensus       102 ~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~----------------  165 (493)
T PRK15462        102 FLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEY----------------  165 (493)
T ss_pred             HHHHHHHHHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhh----------------
Confidence            2333344455666777777788999999975  7999999999999999999999999875432                


Q ss_pred             chhhHHHHHHHHHHHHHHHHHhhhh
Q 008096          524 GKLEYFYWLITLLQVVNVIYYFFCA  548 (577)
Q Consensus       524 ~~~~~~~~~~~~~~~~~~i~~~~~~  548 (577)
                       ++.+.|...++..+++++.+++..
T Consensus       166 -Gw~~~F~iaaigm~l~li~~~~~~  189 (493)
T PRK15462        166 -SWAMGFGLAAVGMIAGLVIFLCGN  189 (493)
T ss_pred             -ChHHHHHHHHHHHHHHHHHHHHhh
Confidence             234456665555555555555433

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=97.80  E-value=5e-05  Score=77.35  Aligned_cols=112  Identities=15%  Similarity=0.097  Sum_probs=86.9

Q ss_pred             cchhhhhhHHHHHHHHHhhhhhhhhccccccCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcc
Q 008096          360 AGSMSVFTMVSMLSTIALYDRIIIPVARKFTGLDRGITFLHRMGIGFVISVLATLVAGFVEMKRKQAALAHGLVDKPHII  439 (577)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ig~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  439 (577)
                      .+.+++..++.=.+..|.    ++.+.||.|||+.       +.+|.+..++++++.+...                   
T Consensus        70 aGflGSsF~ilQ~~sS~~----~G~~SD~yGRkpv-------ll~c~~~va~s~ll~~~S~-------------------  119 (451)
T KOG2615|consen   70 AGFLGSSFSILQFISSPL----WGCLSDRYGRKPV-------LLACLIGVALSYLLWALSR-------------------  119 (451)
T ss_pred             hhhHhhHHHHHHHHhhhh----hhhhhhhhCchHH-------HHHHHHHHHHHHHHHHHHH-------------------
Confidence            445555566655666666    4457777777765       8889998888888877665                   


Q ss_pred             ccchhhHHHHHHHHHHHHHHHHhhhhhhhhhcccCcccHHHHHHHHHHHHhHHHHHHHHHHHHHhh
Q 008096          440 IPISVLWLVPQYSLHGIAEAFMSVGHLEFLYDQAPESMRSTATALFWTANSIGNYVSTLLVTLVHK  505 (577)
Q Consensus       440 ~~~~~~~l~~~~~l~gi~~~~~~~~~~~~v~~~~P~~~rg~~~gi~~~~~~lg~~l~~~i~~~v~~  505 (577)
                         ++..++..-++.|+..+-.+ ..-+++.|.++++.|+.+++...++.++|..+||.+.+++..
T Consensus       120 ---~F~afv~aR~l~Gi~kgnl~-v~rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~  181 (451)
T KOG2615|consen  120 ---NFAAFVLARFLGGIFKGNLS-VIRAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQ  181 (451)
T ss_pred             ---HHHHHHHHHHhhhhccCchH-HHHHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHh
Confidence               66555665777888765444 456789999999999999999999999999999999998765

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=97.77  E-value=6.2e-05  Score=79.83  Aligned_cols=172  Identities=9%  Similarity=-0.028  Sum_probs=132.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhHhhhhchhhhhhhhhhccchhHHHHHHHHHHHHHHHHHH
Q 008096           23 FANEVCEKLAVVGFHANMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADTYAGRFWTITVASIIYQIGMFSLT  102 (577)
Q Consensus        23 ~~~~~~~~~~~~~~~~~l~~~l~~~lg~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~i~~~~~~  102 (577)
                      +...++.....-.+.++|--++ ++++-...-.|.....--.+-.+.-++.+++..|+ |+-+++.+++....+=.+...
T Consensus       377 f~~av~mG~g~~lv~tFLfWHl-ed~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~ki-GHv~v~~lgLa~~~~Rf~~~S  454 (618)
T KOG3762|consen  377 FFVAVVMGAGVGLVFTFLFWHL-EDLGGIKTLFGVVSALCHAGEILFYFFSFKLIEKI-GHVNVMYLGLACNVGRFLYYS  454 (618)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHH-hhcCCcceeeeehhhhhccchHHHHHHHHHHHHHh-cccceeeehhhHHHHHHHHHH
Confidence            3444444455445555664455 46665555555444444455566778889999998 999999999988887777777


Q ss_pred             HhhhcCCCCCCCCCCCCcccccccchhHHHHHHHHHHHhccCCcccchhhhhhccCCCCCchhhhhhhhhhhHHHHH-HH
Q 008096          103 LSAILPQLRPPPCQGDQVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFV-MG  181 (577)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~-~~  181 (577)
                      ...                      |.|..+-.-+++|+..+..+.+..+|++...|++-      |..+-++.... -.
T Consensus       455 ~L~----------------------n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l------~at~Q~l~~g~f~G  506 (618)
T KOG3762|consen  455 YLQ----------------------NPWMVLPIEILQGITHALIWAAIISYASHVAPPGL------RATAQGLLQGIFHG  506 (618)
T ss_pred             Hhc----------------------CchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcc------hHHHHHHHHHHhcc
Confidence            665                      78888889999999999999999999999999987      67777775444 48


Q ss_pred             HHHHHHHHHHHhhcccccchhhhHHHHHHHHHHHHHHHHcccc
Q 008096          182 AAVLVAVTVLVYIQDNVGWNWGLGIPTVAMFLSIIAFVFGYPL  224 (577)
Q Consensus       182 ig~~lg~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~  224 (577)
                      +|-.+|.+|+|.+.+++|-+..|...++.+++.++..+.+.+.
T Consensus       507 lG~g~GslIGG~~v~~fg~~ttf~~~giAcl~~l~~~~~iq~~  549 (618)
T KOG3762|consen  507 LGKGLGSLIGGFVVERFGARTTFRIFGIACLVTLALFISIQLL  549 (618)
T ss_pred             cCcchhhhhhhhhheeehhHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            8999999999999999999999999998888777766655544

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=97.71  E-value=0.011  Score=63.75  Aligned_cols=164  Identities=7%  Similarity=-0.017  Sum_probs=100.3

Q ss_pred             ceehHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-----ChHHHHHHHHHHhHhhhhc-hhhhhhhhhhccchhHHHHHH
Q 008096           17 ITMPFIFANEVCEKLAVVGFHANMISYLTTQLHM-----PLTKAANTLTNFGGTGSLT-PLIGAFVADTYAGRFWTITVA   90 (577)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~lg~-----s~~~~~~i~~~~~~~~~~~-~~~~G~laDr~~Grk~~~~~~   90 (577)
                      +.++......+|-.+.++.+.+     +.|.+..     ......++-+...+...+. .++-+++++|+ +|++.+-+.
T Consensus         7 ~k~~~~~l~fF~il~~Y~iLR~-----lKD~lvv~~~~~gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~-~~~~lf~~~   80 (472)
T TIGR00769         7 KKFLPLFLMFFCILFNYTILRD-----TKDTLVVTAKGSGAEIIPFLKTWVVVPMAVIFMLIYTKLSNIL-SKEALFYTV   80 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHh-----hhhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcC-CHHHhHHHH
Confidence            4445555566666666654443     4555555     3356777777666655554 78899999998 999998877


Q ss_pred             HHHHHHHHHHHHHhhhcCCCCCCCCCCCCccccc--c-cc---------hhHHHHHHHHHHHhccCCccc-chhhhhhcc
Q 008096           91 SIIYQIGMFSLTLSAILPQLRPPPCQGDQVCKEA--D-TG---------QLAILYASLLLAALGSGGIRP-CVVAFGADQ  157 (577)
Q Consensus        91 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~---------~~~~~~~~~~l~g~g~g~~~~-~~~~~~~~~  157 (577)
                      ...+..-..++++.- .|.  .+..|++..|+..  . +.         +.|...+.-+...+-.....+ .-+++.+|.
T Consensus        81 ~~~F~~~f~lF~~vl-~p~--~~~~~p~~~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi  157 (472)
T TIGR00769        81 ISPFLGFFALFAFVI-YPL--SDLLHPTALADKLLSLLPPGFMGFIAILRIWSFALFYVMAELWGSVVLSLLFWGFANQI  157 (472)
T ss_pred             HHHHHHHHHHHHHHH-hcc--hhhcCCcHHHHHHHhhcchhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            777776666666553 221  1222333222111  0 00         111111222222222223333 678899999


Q ss_pred             CCCCCchhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhc
Q 008096          158 FDETDPKQATKTWKYFNWYYFVMGAAVLVAVTVLVYIQ  195 (577)
Q Consensus       158 ~~~~~~~~~~~r~~~~~~~~~~~~ig~~lg~~i~~~l~  195 (577)
                      +..+|      -.+.+++++.+.|+|.++++.+..++.
T Consensus       158 ~t~~q------akRfy~l~~~ganlg~i~sg~~~~~~~  189 (472)
T TIGR00769       158 TTIDE------AKRFYALFGLGANVALIFSGRTIKYFS  189 (472)
T ss_pred             CCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99877      667899999999999999998888776

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>PTZ00207 hypothetical protein; Provisional

Probab=97.70  E-value=0.0004  Score=76.81  Aligned_cols=126  Identities=13%  Similarity=0.145  Sum_probs=85.3

Q ss_pred             hhhccccccCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccccchhhHHHHHHHHHHHHHHHH
Q 008096          382 IIPVARKFTGLDRGITFLHRMGIGFVISVLATLVAGFVEMKRKQAALAHGLVDKPHIIIPISVLWLVPQYSLHGIAEAFM  461 (577)
Q Consensus       382 ~~~~~~r~~~~~~~~~~~~~~~ig~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~gi~~~~~  461 (577)
                      .+++.||++.|+.       +.+|.++..+++++.++...         +       ....+.+.+.+..++.|++.+..
T Consensus        81 ~G~L~Dr~G~R~v-------llig~ll~~iG~ll~ala~~---------~-------~i~~s~~~l~l~r~l~G~G~~~~  137 (591)
T PTZ00207         81 YSFIYDYLGPRPI-------FVLSMTVFCLGTLLFALTFQ---------E-------VIEGSVVRLSVYNGLMTLGCMLF  137 (591)
T ss_pred             HHHHHHHhCcHHH-------HHHHHHHHHHHHHHHHHHhc---------c-------cccCcHHHHHHHHHHHHHHHHHH
Confidence            3456677665443       88899999998887766420         0       00125666677778899999888


Q ss_pred             hhhhhhhhhcccCcccHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCCcchhhHHHHHHHHHHHHHH
Q 008096          462 SVGHLEFLYDQAPESMRSTATALFWTANSIGNYVSTLLVTLVHKFSAGPNGSNWLPDNNLNKGKLEYFYWLITLLQVVNV  541 (577)
Q Consensus       462 ~~~~~~~v~~~~P~~~rg~~~gi~~~~~~lg~~l~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  541 (577)
                      .+.....+.+.+| +.||.+.|+..+...+|+.+.+.+...+..                  .++..+++..++..++..
T Consensus       138 ~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~------------------~~~~~~fl~l~vl~~vv~  198 (591)
T PTZ00207        138 DLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFS------------------DNTSAYFFFLMSFALVVG  198 (591)
T ss_pred             HHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HhHHHHHHHHHHHHHHHH
Confidence            8888888888887 679999999999999999865544443211                  112445666666666655


Q ss_pred             HHHhhhhh
Q 008096          542 IYYFFCAK  549 (577)
Q Consensus       542 i~~~~~~~  549 (577)
                      ++.+.+.+
T Consensus       199 ll~~~~vr  206 (591)
T PTZ00207        199 ILAIVFMR  206 (591)
T ss_pred             HHHHhhee
Confidence            55555543

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=97.66  E-value=0.00087  Score=73.87  Aligned_cols=150  Identities=8%  Similarity=-0.012  Sum_probs=110.7

Q ss_pred             cceehHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChH---HHHHHHHHHhHhhhhchhhhhhhhhhccchhH-HHHHHH
Q 008096           16 IITMPFIFANEVCEKLAVVGFHANMISYLTTQLHMPLT---KAANTLTNFGGTGSLTPLIGAFVADTYAGRFW-TITVAS   91 (577)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~lg~s~~---~~~~i~~~~~~~~~~~~~~~G~laDr~~Grk~-~~~~~~   91 (577)
                      +|.+...+.+.++..+.+|....+.|.....-++-|..   +.++......++..++.++.|.+..+. +|-| .++++.
T Consensus       309 ~r~~~~~lvi~fi~G~~~~s~~~l~p~~~~~vf~~d~~~~~~~~~~s~~~~fg~~~g~~i~g~l~~~i-r~~Kw~li~~~  387 (599)
T PF06609_consen  309 RRGFAALLVISFISGMNFFSVNILWPQQVVNVFGSDPISITEIGWISSPVGFGSCAGAVILGLLFSKI-RHIKWQLIFGS  387 (599)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccceeehhhhhHHHHHHHHHHHHHHHHHHc-cchhHHHHHHH
Confidence            46677767788888888999988989888877766553   577888888888889999999999876 5544 456776


Q ss_pred             HHHHHHHHHHHHhhhcCCCCCCCCCCCCcccccccchhHHHHHHHHHHHhccCCcccchhhhhhccCCCCCchhhhhhhh
Q 008096           92 IIYQIGMFSLTLSAILPQLRPPPCQGDQVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWK  171 (577)
Q Consensus        92 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~  171 (577)
                      +++.++...++...                    ++|....+...++.|+|.|...........-..|+++      .+.
T Consensus       388 ~~~ta~~Gama~~~--------------------~~n~~~~i~~~~l~g~giG~~~~~~~~~~ql~~p~~~------ig~  441 (599)
T PF06609_consen  388 VLMTAFCGAMAAVR--------------------PDNKNAAIAFLVLAGFGIGGILVPAIVIAQLIVPDED------IGT  441 (599)
T ss_pred             HHHHHHHHHHHHcc--------------------CCCcchHHHHHHHHHHhHHHHHHHHHHeeEeeeCchH------HHH
Confidence            66665545554332                    1233345566778899998887777777777778776      888


Q ss_pred             hhhHHHHHHHHHHHHHHHHHH
Q 008096          172 YFNWYYFVMGAAVLVAVTVLV  192 (577)
Q Consensus       172 ~~~~~~~~~~ig~~lg~~i~~  192 (577)
                      +.++......+|+.+|..+..
T Consensus       442 a~gL~~s~R~~GGsIg~aIy~  462 (599)
T PF06609_consen  442 ATGLTGSIRSIGGSIGYAIYN  462 (599)
T ss_pred             HHHHHHHHHHHhhHHHHHHHH
Confidence            888888888888888877643

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=97.66  E-value=0.00018  Score=77.88  Aligned_cols=163  Identities=16%  Similarity=0.140  Sum_probs=104.9

Q ss_pred             ehHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhHhhhhchhhhhhhhhh----ccchhHHHHHHHHHH
Q 008096           19 MPFIFANEVCEKLAVVGFHANMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADT----YAGRFWTITVASIIY   94 (577)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~lg~s~~~~~~i~~~~~~~~~~~~~~~G~laDr----~~Grk~~~~~~~~~~   94 (577)
                      ++...+..++....-|++..++|.|+++-.|+|..+++.+...+.+++.++.++.|+++||    . .+|..+...+.++
T Consensus       275 vw~~~l~~~~~~lv~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~-~~~~~~~~~~~~~  353 (495)
T KOG2533|consen  275 VWPFSLCYFFLKLVNYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRLKTIF-ARRLLFIVFLCLY  353 (495)
T ss_pred             HHHHHHHHHHHhhccccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHHhhhH-HHHHHHHHHHHHH
Confidence            4555667888888889999999999998677999999999999999999999999999999    5 6666666665554


Q ss_pred             HH-HHHHHHHhhhcCCCCCCCCCCCCcccccccchhHHHHHHHHHHHhccCCcccchhhhhhccCCCCCchhhhhhhhhh
Q 008096           95 QI-GMFSLTLSAILPQLRPPPCQGDQVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYF  173 (577)
Q Consensus        95 ~i-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  173 (577)
                      .+ +.+.+....                      .......+.+....+.....++...-..+...++.  +   |-...
T Consensus       354 ~~~g~~~l~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~w~s~~~~g~~--k---~~~~~  406 (495)
T KOG2533|consen  354 AIIGAISLLAAA----------------------VLPGAYGAFLIGPYGLIATAIIALSWTSANLAGNT--K---ALTTV  406 (495)
T ss_pred             HHHHHHHHHhhc----------------------cchHHhHHHHhcchhhHHHHHHHHhhccccccchH--H---hHHHH
Confidence            43 323333322                      12223333333444455555666666666665433  1   33334


Q ss_pred             hHHHHHHHHHHHH-HHHHHHhhcccccchhhhHHHHH
Q 008096          174 NWYYFVMGAAVLV-AVTVLVYIQDNVGWNWGLGIPTV  209 (577)
Q Consensus       174 ~~~~~~~~ig~~l-g~~i~~~l~~~~gw~~~f~~~~~  209 (577)
                      +.+..+.+.+++. +++.-+.....++|...|+....
T Consensus       407 ~~~i~~~~s~~~~~~~~~~~~~ap~y~~~~~f~~~~~  443 (495)
T KOG2533|consen  407 SAIIDGTGSAGAISGQLFRSLDAPRYGWGAVFYMLVA  443 (495)
T ss_pred             hhhhcchhHHHHhhhhhcccccCcchhhhhHHHHHHH
Confidence            4444444444433 33334455556788888844433

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=97.63  E-value=0.0005  Score=75.65  Aligned_cols=195  Identities=14%  Similarity=0.121  Sum_probs=108.7

Q ss_pred             CCcceehHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhHhhhhchhhhhhhhhhccchhHHHHHHHHH
Q 008096           14 GGIITMPFIFANEVCEKLAVVGFHANMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADTYAGRFWTITVASII   93 (577)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~lg~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~   93 (577)
                      ..++..........+.++.-+-...+....+-+..|.+... .+......+...++..++.++.||+ |||+.++.+...
T Consensus       291 ~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~~g~~~~~-~~~~~~~~~v~~~~t~~~~~lvd~~-gRr~lll~s~~~  368 (513)
T KOG0254|consen  291 KVRKRLIIGLLLQLFQQLTGINYVFYYSTTIFKSAGLKSDT-FLASIILGVVNFLGTLVATYLVDRF-GRRKLLLFGAAG  368 (513)
T ss_pred             chHHHHHHHHHHHHHHHHhCCceEEeehHHHHHhcCCCCch-HHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHhHHH
Confidence            34555555555666655554444444444444566666443 4455555566667777779999998 999999999999


Q ss_pred             HHHHHHHHHHhhhcCCCCCCCCCCCCcccccccchhHHHHHHHHHHHhccCCcccchhhhhhccCCCCCchhhhhhhhhh
Q 008096           94 YQIGMFSLTLSAILPQLRPPPCQGDQVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYF  173 (577)
Q Consensus        94 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  173 (577)
                      +.++.++++...........        ...............++..+. .+..|....+.+|.+|.+-      |+++.
T Consensus       369 m~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~v~~f~-~g~g~v~w~~~sEifp~~~------r~~~~  433 (513)
T KOG0254|consen  369 MSICLVILAVVGVFALYYPN--------SSKGAGWLAIVFLCLFIFSFA-IGWGPVPWVIVSEIFPLRL------RSKGA  433 (513)
T ss_pred             HHHHHHHHHHHHHHhccCCC--------cccchhHHHHHHHHHHHHHHh-cccccchhhhhhccCcHhH------HhhhH
Confidence            99999988876522210000        000011122222223333333 3334666678899999877      77777


Q ss_pred             hHHHHHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHHHHH-HHHHccccc
Q 008096          174 NWYYFVMGAAVLVAVTVLVYIQDNVGWNWGLGIPTVAMFLSII-AFVFGYPLY  225 (577)
Q Consensus       174 ~~~~~~~~ig~~lg~~i~~~l~~~~gw~~~f~~~~~~~~~~~~-~~~~~~~~~  225 (577)
                      ++-.....+...+-......+.+..++...|........+..+ ..++..|+.
T Consensus       434 s~~~~~n~~~~~~v~~~~~~~~~~~~~~~~f~~f~~~~~~~~~~fv~~~~pET  486 (513)
T KOG0254|consen  434 SLAVAVNWLWNFLISFFFPFITEALGIGGTFGYFGGICLLSLIIFVFFFVPET  486 (513)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHheEEcccC
Confidence            7754444443333222222333333334556555555555555 445555543

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=97.41  E-value=0.00052  Score=75.60  Aligned_cols=128  Identities=9%  Similarity=0.167  Sum_probs=96.7

Q ss_pred             hhhhhHHHHHHHHHhhhhhhhhccccccCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccccc
Q 008096          363 MSVFTMVSMLSTIALYDRIIIPVARKFTGLDRGITFLHRMGIGFVISVLATLVAGFVEMKRKQAALAHGLVDKPHIIIPI  442 (577)
Q Consensus       363 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ig~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  442 (577)
                      ..++..++.+++..+    .+++.||+|||+.       +..++++..++-++.++..                      
T Consensus       123 ~~s~~~~G~~vG~~i----~g~lsD~~GRk~~-------~~~~~~~~~i~~~~~a~a~----------------------  169 (521)
T KOG0255|consen  123 GQSLFFLGVLVGSLI----FGPLSDRFGRKPV-------LLVSLLLFIIFGILTAFAP----------------------  169 (521)
T ss_pred             HHHHHHHHHHHHHhh----heehHhhcccHHH-------HHHHHHHHHHHHHHHHHhC----------------------
Confidence            344455555555555    4557777766654       7788888777776666665                      


Q ss_pred             hhhHHHHHHHHHHHHHHHHhhhhhhhhhcccCcccHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCC
Q 008096          443 SVLWLVPQYSLHGIAEAFMSVGHLEFLYDQAPESMRSTATALFWTANSIGNYVSTLLVTLVHKFSAGPNGSNWLPDNNLN  522 (577)
Q Consensus       443 ~~~~l~~~~~l~gi~~~~~~~~~~~~v~~~~P~~~rg~~~gi~~~~~~lg~~l~~~i~~~v~~~~~~~~~~~~~~~~~~~  522 (577)
                      ++....+.-++.|++........+.++.|..+++.|+.+..+ ......++.+++.+.+++..                 
T Consensus       170 ~~~~~~~~Rfl~G~~~~~~~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~-----------------  231 (521)
T KOG0255|consen  170 NYWMFLIFRFLSGFFGSGPLTVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR-----------------  231 (521)
T ss_pred             cHHHHHHHHHHHHhhccchhHHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh-----------------
Confidence            788888888999999999999999999999999999999999 88888888888888777532                 


Q ss_pred             cchhhHHHHHHHHHHHHHHHH
Q 008096          523 KGKLEYFYWLITLLQVVNVIY  543 (577)
Q Consensus       523 ~~~~~~~~~~~~~~~~~~~i~  543 (577)
                        ++.+.++...+..++.+++
T Consensus       232 --~Wr~~~~~~~~~~~~~~~~  250 (521)
T KOG0255|consen  232 --DWRWLFWIISIPSGLFLLL  250 (521)
T ss_pred             --hHHHHHHHHHHHHHHHHHH
Confidence              3456677766666666555

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=97.38  E-value=0.0012  Score=69.04  Aligned_cols=182  Identities=15%  Similarity=0.030  Sum_probs=116.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhHhhhhchhhhhhhhhhccchhHHHHHHHHHHHHHHH
Q 008096           20 PFIFANEVCEKLAVVGFHANMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADTYAGRFWTITVASIIYQIGMF   99 (577)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~lg~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~i~~~   99 (577)
                      ..+..+.......+|++.+.+-.-+ ..-|++...+|++.....++++++..+.|.++||....|.+..+......++..
T Consensus       269 ~il~~~ygi~~g~F~~l~~~l~~~l-~~sgY~~~~aG~ig~l~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v~~~  347 (480)
T KOG2563|consen  269 IILAICYGIGLGLFNSLSTLLNLAL-CPSGYEGVFAGYIGALMIVAGMLGALASGIIADKTKKFKLTTLVLYLFALVGTL  347 (480)
T ss_pred             HHHHHHHhhhHHHHHHHHHHhhhcc-ccccCCccccchhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence            3334444555555555555553333 345788889999999999999999999999999986666666666666555532


Q ss_pred             HHHHhhhcCCCCCCCCCCCCcccccccchhHHHHHHHHHHHhccCCcccchhhhhhccCCCCCchhhhhhhhhhhHHHHH
Q 008096          100 SLTLSAILPQLRPPPCQGDQVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFV  179 (577)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  179 (577)
                      .....+.                  .....++++..-.+.|.+..+..|...-+..|..-+..      -+...|+.+..
T Consensus       348 ~l~~~t~------------------~~~~~viv~~t~~~~g~~~~~~~Pig~ElgvE~TyPv~------E~tSsGll~~~  403 (480)
T KOG2563|consen  348 MLLTCTL------------------FLGDSVIVFTTCGLLGFFGTGYLPIGFELGVETTYPVA------EGTSSGLLNLS  403 (480)
T ss_pred             HHHHhhc------------------cCCceEehhhhHHHHHHhhcCCCCcceeeeeeeccccC------CcccceeEEee
Confidence            2221111                  11245567777778888888899998888888764433      23446666555


Q ss_pred             HHHHHHHHHHHHHhhccccc----chhhhHHHHHHHHHHHHHHHHcccccc
Q 008096          180 MGAAVLVAVTVLVYIQDNVG----WNWGLGIPTVAMFLSIIAFVFGYPLYR  226 (577)
Q Consensus       180 ~~ig~~lg~~i~~~l~~~~g----w~~~f~~~~~~~~~~~~~~~~~~~~~~  226 (577)
                      .++-.++=.++.+...+..+    |...-+.....+++..++..+.+++++
T Consensus       404 gq~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~lva~~r~~y~  454 (480)
T KOG2563|consen  404 GQIFGVILVFIMGILAEDLGPPGNTFPANIFLTVSALLGAILVAFFRPDYR  454 (480)
T ss_pred             hhHHHHHHHHHHHHHhhccCCCCCCccchhHhHHHHHHHHHHHhhhhhhHH
Confidence            66655555566677777665    443445555555556666566565543

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=97.32  E-value=0.00037  Score=72.81  Aligned_cols=173  Identities=14%  Similarity=0.069  Sum_probs=116.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHH--------HHHHH-hHhhhhchhhhhhhhhhccchhHHHHHHHHH
Q 008096           23 FANEVCEKLAVVGFHANMISYLTTQLHMPLTKAAN--------TLTNF-GGTGSLTPLIGAFVADTYAGRFWTITVASII   93 (577)
Q Consensus        23 ~~~~~~~~~~~~~~~~~l~~~l~~~lg~s~~~~~~--------i~~~~-~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~   93 (577)
                      ....|...+++|+.-.+...-++ ..|+.+++...        ...+. ......+..++.++.|+. |||+..+.|.++
T Consensus       310 ~~~WFllDiafy~~nL~~s~I~~-~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~i-GRk~iq~~GF~~  387 (538)
T KOG0252|consen  310 AGTWFLLDIAFYGQNLFQSVIFS-AIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDII-GRKYIQLMGFFI  387 (538)
T ss_pred             HHHHHhhhhhhhccccHHHHHHH-hhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehh-hhHHHHHhhHHH
Confidence            33666677888877777665554 44544333332        11111 223334667788899997 999999999998


Q ss_pred             HHHHHHHHHHhhhcCCCCCCCCCCCCcccccccchhHHHHHHHHHHHhccCCcccchhhhhhccCCCCCchhhhhhhhhh
Q 008096           94 YQIGMFSLTLSAILPQLRPPPCQGDQVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYF  173 (577)
Q Consensus        94 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  173 (577)
                      +.+-.+.++..-+  +            .. +  ....+...-+.+-++.-+.......+.+|.||.+.      |+...
T Consensus       388 ~~i~~~~~~~~y~--~------------~~-~--~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FParv------R~t~h  444 (538)
T KOG0252|consen  388 MTIFFFVIAGPYN--Q------------LE-N--TIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPARV------RSTCH  444 (538)
T ss_pred             HHHHHHHHcCCcc--c------------cc-c--cCceeehHHHHHHHHhcCCCceeEEeehhhchHHH------hhhhh
Confidence            8887776665321  0            00 1  11112222222334444455566677799999888      99999


Q ss_pred             hHHHHHHHHHHHHHHHHHHhhcc-----cccchhhhHHHHHHHHHHHHHHHH
Q 008096          174 NWYYFVMGAAVLVAVTVLVYIQD-----NVGWNWGLGIPTVAMFLSIIAFVF  220 (577)
Q Consensus       174 ~~~~~~~~ig~~lg~~i~~~l~~-----~~gw~~~f~~~~~~~~~~~~~~~~  220 (577)
                      ++-....-+|+++|.....++.+     ..|.+..|++.+.++++..+.-.+
T Consensus       445 GIsAA~GK~GAivg~~~F~~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T~l  496 (538)
T KOG0252|consen  445 GISAASGKAGAIVGAFGFLYLTDHNYPPNIGVRNVFIILAGCMLLGILFTLL  496 (538)
T ss_pred             hHHHHhccchHHHHHHHhhHhhhccCCccccchHHHHHHHHHHHHhHheeEE
Confidence            99999999999999999999988     788999999999888877665443

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=97.14  E-value=0.015  Score=62.28  Aligned_cols=161  Identities=13%  Similarity=0.120  Sum_probs=96.9

Q ss_pred             cchhhhhhHHHHHHHHHhhhhhhhhccccccCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcc
Q 008096          360 AGSMSVFTMVSMLSTIALYDRIIIPVARKFTGLDRGITFLHRMGIGFVISVLATLVAGFVEMKRKQAALAHGLVDKPHII  439 (577)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ig~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  439 (577)
                      .++..+...++..+..|++++    ...|.+.      ..+.++.|.+++.++.+++...+.                  
T Consensus        73 fG~viaa~slg~~i~~liF~~----Ws~k~~~------~k~Pli~s~ii~~~g~llY~~l~~------------------  124 (488)
T KOG2325|consen   73 FGLVIAASSLGHAIFSLIFGI----WSNKTGS------VKKPLIVSFLIAIIGNLLYLALAY------------------  124 (488)
T ss_pred             hhHHHHHHHHHHHhcchhhcc----cccccCC------cccCHHHHHHHHHHHHHHHHHHHh------------------
Confidence            455556677777778888666    4444442      112288899999999888865541                  


Q ss_pred             ccc-hhhHHHHHHHHHHHHHHHHhhhhhhhhhcccCcccHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCCCCCCCCCC
Q 008096          440 IPI-SVLWLVPQYSLHGIAEAFMSVGHLEFLYDQAPESMRSTATALFWTANSIGNYVSTLLVTLVHKFSAGPNGSNWLPD  518 (577)
Q Consensus       440 ~~~-~~~~l~~~~~l~gi~~~~~~~~~~~~v~~~~P~~~rg~~~gi~~~~~~lg~~l~~~i~~~v~~~~~~~~~~~~~~~  518 (577)
                      .+. .-+++....++.|+|.+. ....=.|+.+..-.+.|.++++.......+|..+||.+...+.... .++ -.+.+ 
T Consensus       125 ~~~~~~y~mL~~R~l~Gvg~~n-~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg-~~G-~~i~~-  200 (488)
T KOG2325|consen  125 VPNGVKYLMLVARILTGVGVGN-FAVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFTPLG-EKG-FMILP-  200 (488)
T ss_pred             cccchHHHHHHHHHHcCcCccc-HHHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHhhhc-CCc-eEEcC-
Confidence            112 445667788888888433 2344456777666666777777777777777777777766653322 110 12222 


Q ss_pred             CCCCcchhhHHHHHHHHHHHHHHHHHhhhhhcccc
Q 008096          519 NNLNKGKLEYFYWLITLLQVVNVIYYFFCAKIYTF  553 (577)
Q Consensus       519 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  553 (577)
                       ++..+-+...-|+.+.+.++.+++.+++.+|...
T Consensus       201 -~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~~~  234 (488)
T KOG2325|consen  201 -GLIFNMYTAPAWLMAILWIIYIVIILFFFKEVYR  234 (488)
T ss_pred             -cceEEecchHHHHHHHHHHHHHHHHHhheeeccc
Confidence             1223333334466677777777777777666433

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=96.98  E-value=0.012  Score=53.65  Aligned_cols=113  Identities=13%  Similarity=0.205  Sum_probs=81.6

Q ss_pred             ChHHHHHHHHHHhHhhhhchhhhhhhhhhccchhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCcccccccchhH
Q 008096           51 PLTKAANTLTNFGGTGSLTPLIGAFVADTYAGRFWTITVASIIYQIGMFSLTLSAILPQLRPPPCQGDQVCKEADTGQLA  130 (577)
Q Consensus        51 s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (577)
                      ++.....-.++......+.+++...+.++. |.|+++++|.+.+.+-......                       ++.+
T Consensus        35 ~~~~G~~slai~Y~~~~~s~l~~P~iv~~l-g~K~sm~lg~~~y~~y~~~~~~-----------------------~~~~   90 (156)
T PF05978_consen   35 SAGLGYYSLAILYGSFAISCLFAPSIVNKL-GPKWSMILGSLGYAIYIASFFY-----------------------PNSY   90 (156)
T ss_pred             cccccHHHHHHHHHHHHHHHHhHHHHHHHH-hhHHHHHHHHHHHHHHHHHHHh-----------------------hhHH
Confidence            333334444555556667777888888987 9999999998877754433321                       1577


Q ss_pred             HHHHHHHHHHhccCCcccchhhhhhccCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHHHHHh
Q 008096          131 ILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAVLVAVTVLVY  193 (577)
Q Consensus       131 ~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~lg~~i~~~  193 (577)
                      .++.+-++.|+|.+..+.+.-.++.+..++++      |++..+++-...+.+.++|.++.-.
T Consensus        91 ~l~~~s~l~G~~~a~lW~aqg~ylt~~s~~~~------~~~~~~ifw~i~~~s~i~G~~~~~~  147 (156)
T PF05978_consen   91 TLYPASALLGFGAALLWTAQGTYLTSYSTEET------IGRNTGIFWAIFQSSLIFGNLFLFF  147 (156)
T ss_pred             HHHHHHHHHhhhhHHhhHhhhHHHHHcCCHHH------HhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            88999999999999999999999998877655      6666777666666666666655433

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters

Probab=96.76  E-value=0.0092  Score=48.05  Aligned_cols=67  Identities=6%  Similarity=0.024  Sum_probs=59.8

Q ss_pred             HHHHHHHHHhcCCChHHHHHHHHHHhHhhhhchhhhhhhhhhccchhHHHHHHHHHHHHHHHHHHHhh
Q 008096           38 ANMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADTYAGRFWTITVASIIYQIGMFSLTLSA  105 (577)
Q Consensus        38 ~~l~~~l~~~lg~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~i~~~~~~~~~  105 (577)
                      +.+.+.|+++.++|.++.+++.+.-.+++.++.+...++.++. .+++.+..+.+...+..+.+++..
T Consensus        12 TplLP~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~-~~~~~~~~~l~~~~~~~~~ma~~~   78 (85)
T PF06779_consen   12 TPLLPLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHS-RPRRLLRAGLLLTVLSTAAMALTH   78 (85)
T ss_pred             HhHhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3345567789999999999999999999999999999999986 888999999999999999999865

Note that many members are hypothetical proteins.

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=96.75  E-value=0.007  Score=65.22  Aligned_cols=127  Identities=15%  Similarity=0.207  Sum_probs=109.5

Q ss_pred             HHHHHHHHhcCCChHHHHHHHHHHhHhhhhchhhhh-hhhhhccchhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCC
Q 008096           39 NMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGA-FVADTYAGRFWTITVASIIYQIGMFSLTLSAILPQLRPPPCQG  117 (577)
Q Consensus        39 ~l~~~l~~~lg~s~~~~~~i~~~~~~~~~~~~~~~G-~laDr~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  117 (577)
                      .++.|+...++++..+.+...+..+....+.+++.. .+.-.+ |-|+.+..|++...+.....+++.            
T Consensus       263 ~~~~yl~~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l-~~~~~i~lGl~~~~~~~~~~af~~------------  329 (463)
T KOG2816|consen  263 VLLLYLKAKFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSIL-GEKRLISLGLLSEFLQLLLFAFAT------------  329 (463)
T ss_pred             EEEEEEeeecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhhHhhHHHHHHHHHHHHHHHhc------------
Confidence            446778888999999999999999999999999888 667666 999999999999999999999987            


Q ss_pred             CCcccccccchhHHHHHHHHHHHhccCCcccchhhhhhccCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhc
Q 008096          118 DQVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAVLVAVTVLVYIQ  195 (577)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~lg~~i~~~l~  195 (577)
                                +.|.++....+.++. +...|...++.+.+.++++      +++.+++.+....+..+++|.+-+.+.
T Consensus       330 ----------~~w~~~~~~v~~~~~-~~~~pa~~s~~s~~v~~~e------~g~v~~~is~i~~l~~~~~~~~~~~i~  390 (463)
T KOG2816|consen  330 ----------ETWMMFAAGVVVALA-GIVFPAIRAFASILVSPEE------QGKVFGIISGIEGLSGVVSPALYGNIF  390 (463)
T ss_pred             ----------cchhhhHHHHHHHhh-cchhHHHHhHHHhhccccc------ccchhhHHHHHHHHhhhhhHHHHHHHH
Confidence                      566677777666655 5667999999999999998      999999999999999999999877654

>PRK03612 spermidine synthase; Provisional

Probab=96.66  E-value=0.078  Score=58.29  Aligned_cols=168  Identities=10%  Similarity=0.009  Sum_probs=93.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhHhhhhchhhhhhhhhhccchhHHHHHHHHHHH---HHHHHHHHh
Q 008096           28 CEKLAVVGFHANMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADTYAGRFWTITVASIIYQ---IGMFSLTLS  104 (577)
Q Consensus        28 ~~~~~~~~~~~~l~~~l~~~lg~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~---i~~~~~~~~  104 (577)
                      +..+..-+.-....-.++-.+|-+..+.+.+.+.+..+..+++.++|+++++- -++. ..+-..+..   ++..++...
T Consensus        25 ~sg~~~L~yEv~~~r~l~~~~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~~-~~~~-~~~e~~i~l~~~~~~~ll~~~  102 (521)
T PRK03612         25 VCAACGLVYELLLGTLASYLLGDSVTQFSTVIGLMLFAMGVGALLSKYLLRDA-AAGF-VAVELLLALLGGLSALILYAA  102 (521)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhH-HHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence            33333333334445556667789999999999999999999999999887543 2222 222111111   111111111


Q ss_pred             hhcCCCCCCCCCCCCcccccccchhHHHHHHHHHHHhccCCcccchhhhhhccCCCCCchhhhhhhhhhhHHHHHHHHHH
Q 008096          105 AILPQLRPPPCQGDQVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAV  184 (577)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~  184 (577)
                      ..+.                 ......++...++.++..|+..|....+..+... ++      -++..|-.|....+|+
T Consensus       103 ~~~~-----------------~~~~~~~~~~~~~~~~l~G~~~Pl~~~~~~~~~~-~~------~g~~~g~ly~~ntlGa  158 (521)
T PRK03612        103 FAFQ-----------------GLSRLLLYVLVLLIGLLIGMEIPLLMRILQRIRD-QH------LGHNVATVLAADYLGA  158 (521)
T ss_pred             HHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cc------hhhhhhhhHhHHhHHH
Confidence            1000                 0011223344455677778777777776654322 11      3455677778888889


Q ss_pred             HHHHHHHHhhcc-cccch-hhhHHHHHHHHHHHHHHHHc
Q 008096          185 LVAVTVLVYIQD-NVGWN-WGLGIPTVAMFLSIIAFVFG  221 (577)
Q Consensus       185 ~lg~~i~~~l~~-~~gw~-~~f~~~~~~~~~~~~~~~~~  221 (577)
                      ++|.++.+++.- .+|-. ..+.++.+-.++++++++..
T Consensus       159 ~~G~l~~~~vLlp~lG~~~t~~~~a~l~~~~a~~~~~~~  197 (521)
T PRK03612        159 LVGGLAFPFLLLPRLGLIRTAALTGSLNLLAALVFLWLF  197 (521)
T ss_pred             HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHH
Confidence            888888776543 56644 33444443344444444433

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=96.58  E-value=0.00037  Score=76.71  Aligned_cols=137  Identities=13%  Similarity=0.163  Sum_probs=2.9

Q ss_pred             cchhhhhhHHHHHHHHHhhhhhhhhccccccCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHH-----H-------H
Q 008096          360 AGSMSVFTMVSMLSTIALYDRIIIPVARKFTGLDRGITFLHRMGIGFVISVLATLVAGFVEMKRKQ-----A-------A  427 (577)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ig~~~~~l~~~~~~~~~~~~~~-----~-------~  427 (577)
                      .+.+.+.+-++.++...++.+    +++|.       ++.+++.+|.++++++.++.++-.-....     .       .
T Consensus        40 ~G~i~s~~di~~~~~~~~vsy----~g~~~-------hrprwig~g~~~~~~g~~l~~lPhf~~~~y~~~~~~~~~~~~~  108 (539)
T PF03137_consen   40 SGLISSSYDIGSLVVVLFVSY----FGGRG-------HRPRWIGIGALLMGLGSLLFALPHFLSGPYSYEEASNSNGNSS  108 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHH----Hhhhc-------CCcceeeecHHHHHHHHHHHhccHhhcCCCccccccccccccc
Confidence            456666677777777776665    55442       23356888999888888776642100000     0       0


Q ss_pred             HhcCCCC--------C--------CCccccchhhHHHHHHHHHHHHHHHHhhhhhhhhhcccCcccHHHHHHHHHHHHhH
Q 008096          428 LAHGLVD--------K--------PHIIIPISVLWLVPQYSLHGIAEAFMSVGHLEFLYDQAPESMRSTATALFWTANSI  491 (577)
Q Consensus       428 ~~~~~~~--------~--------~~~~~~~~~~~l~~~~~l~gi~~~~~~~~~~~~v~~~~P~~~rg~~~gi~~~~~~l  491 (577)
                      ....+|+        +        +.......+..++++.+++|+|..-..+...+|+-|.++++.-+.+.|+...+..+
T Consensus       109 ~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~splYiGi~~~~~~l  188 (539)
T PF03137_consen  109 ISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKNSPLYIGILYAMSIL  188 (539)
T ss_dssp             -------------------------------------------SSS----------------------------------
T ss_pred             cccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeeccccccccCccchhhhhHHhhc
Confidence            0112330        0        01112223455677889999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhc
Q 008096          492 GNYVSTLLVTLVHKFS  507 (577)
Q Consensus       492 g~~l~~~i~~~v~~~~  507 (577)
                      |..+|-++.+...+..
T Consensus       189 GPa~Gf~lg~~~L~~y  204 (539)
T PF03137_consen  189 GPALGFLLGSFCLRIY  204 (539)
T ss_dssp             ----------------
T ss_pred             cHHHHHHHHHHHHhce
Confidence            9999988887765543

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.17  E-value=0.048  Score=61.12  Aligned_cols=139  Identities=13%  Similarity=0.130  Sum_probs=93.8

Q ss_pred             cchhhhhhHHHHHHHHHhhhhhhhhccccccCCCCCCCchhHHHHHHHHHHHHHHHHHHHH----HHHHHHHH----hcC
Q 008096          360 AGSMSVFTMVSMLSTIALYDRIIIPVARKFTGLDRGITFLHRMGIGFVISVLATLVAGFVE----MKRKQAAL----AHG  431 (577)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ig~~~~~l~~~~~~~~~----~~~~~~~~----~~~  431 (577)
                      .+.+.+.+-++..+....+++    ++.|. +      ..+++.+|.++++++.++.++-.    ........    .++
T Consensus       134 sG~I~s~~dig~~l~i~fVsY----fG~r~-H------rPr~Ig~G~~~m~lgsll~alPHf~~~~y~~~~~~~~~~~~~  202 (735)
T KOG3626|consen  134 SGLIASSYDIGNLLLIIFVSY----FGSRG-H------RPRWIGIGLVLMGLGSLLFALPHFFSGPYEYELEVIKQSVEN  202 (735)
T ss_pred             ceeEeeecccchhhhhHhHHH----hcccc-C------ccceeeechhHHHHHHHHHhChHHhcCcchhhhhhhhccccC
Confidence            456666666666666666666    55443 2      22347889999888877766431    11111111    001


Q ss_pred             C---------------C--CCCCc----cc-cchhhHHHHHHHHHHHHHHHHhhhhhhhhhcccCcccHHHHHHHHHHHH
Q 008096          432 L---------------V--DKPHI----II-PISVLWLVPQYSLHGIAEAFMSVGHLEFLYDQAPESMRSTATALFWTAN  489 (577)
Q Consensus       432 ~---------------~--~~~~~----~~-~~~~~~l~~~~~l~gi~~~~~~~~~~~~v~~~~P~~~rg~~~gi~~~~~  489 (577)
                      .               +  .+++.    .. ...+..++.+.++.|+|..-.++....|+-|-+.++.-+.+.|+.++..
T Consensus       203 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~SplYlgi~~~~~  282 (735)
T KOG3626|consen  203 PSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFTLGISYIDDNVKKKNSPLYLGILYSMA  282 (735)
T ss_pred             CccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCccCCCccccccccccCCcHHHHHHHHHH
Confidence            1               0  00111    11 1234456778899999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHhhhcCC
Q 008096          490 SIGNYVSTLLVTLVHKFSAG  509 (577)
Q Consensus       490 ~lg~~l~~~i~~~v~~~~~~  509 (577)
                      .+|-++|-++.++..+....
T Consensus       283 ~lGPaiGfllgS~~l~lYvD  302 (735)
T KOG3626|consen  283 ILGPAIGFLLGSFCLKLYVD  302 (735)
T ss_pred             HhhhHHHHHHHHHHHHeeec
Confidence            99999999998888776644

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=96.02  E-value=0.039  Score=62.21  Aligned_cols=66  Identities=35%  Similarity=0.628  Sum_probs=60.7

Q ss_pred             CccccchhhHHHHHHHHHHHHHHHHhhhhhhhhhcccCcccHHHHHHHHHHHHhHHHHHHHHHHHH
Q 008096          437 HIIIPISVLWLVPQYSLHGIAEAFMSVGHLEFLYDQAPESMRSTATALFWTANSIGNYVSTLLVTL  502 (577)
Q Consensus       437 ~~~~~~~~~~l~~~~~l~gi~~~~~~~~~~~~v~~~~P~~~rg~~~gi~~~~~~lg~~l~~~i~~~  502 (577)
                      ...+..+.+|.++++++.+.+|.+.....+++..+.+|+++|+.+.+++....++|+.+...+...
T Consensus       558 ~~~~~~~~~wq~pq~~~~~~~e~~~~~~~~e~~~~~~p~~mks~~~a~~~~~~~~g~~~~~~~~~~  623 (654)
T TIGR00926       558 VSVNTVSILWQIPQYVILTAGEVLFSVTGLEFSYSQAPPNMKSVLQALWLLTVAIGNLIVVVIAEF  623 (654)
T ss_pred             cCCCceeHHHHHHHHHHHHHHHHHHHHHHHHhhHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            345678999999999999999999999999999999999999999999999999999999888654

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=95.77  E-value=0.12  Score=50.91  Aligned_cols=99  Identities=13%  Similarity=0.079  Sum_probs=64.1

Q ss_pred             hhhccccccCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccccchhhHHHHHHHHHHHHHHHH
Q 008096          382 IIPVARKFTGLDRGITFLHRMGIGFVISVLATLVAGFVEMKRKQAALAHGLVDKPHIIIPISVLWLVPQYSLHGIAEAFM  461 (577)
Q Consensus       382 ~~~~~~r~~~~~~~~~~~~~~~ig~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~gi~~~~~  461 (577)
                      .+.+.|+.+       |...+.+|.+...+++...-..-        ++.       ....+.|.+....++.+.+....
T Consensus        56 ~G~l~d~~g-------p~~~l~iG~~~~~~GY~~~~l~~--------~~~-------i~~~~~~~~~~~~~l~~~s~~~~  113 (250)
T PF06813_consen   56 AGLLYDRFG-------PWVVLLIGAVLGFVGYGLLWLAV--------SGR-------IPSLPVWLMCLFLFLGGNSSCWF  113 (250)
T ss_pred             HHHHHHhcc-------hHHHHHHHHHHHHHHHHHHHHHH--------hCc-------cCccchHHHHHHHHHHcccHHHh
Confidence            344666653       33337888888888887654432        110       11234455555555555666666


Q ss_pred             hhhhhhhhhcccCcccHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 008096          462 SVGHLEFLYDQAPESMRSTATALFWTANSIGNYVSTLLVTLV  503 (577)
Q Consensus       462 ~~~~~~~v~~~~P~~~rg~~~gi~~~~~~lg~~l~~~i~~~v  503 (577)
                      +........+.+|+ .||++.|+.-...++++.+-..+...+
T Consensus       114 ~ta~lvt~~~NFP~-~RG~vvgilk~~~GLSaai~t~i~~~~  154 (250)
T PF06813_consen  114 NTASLVTCVRNFPR-SRGTVVGILKGFFGLSAAIFTQIYSAF  154 (250)
T ss_pred             hhHHHHHHHHhCcc-ccCceehhhhHHHHhHHHHHHHHHHHH
Confidence            66666667788885 699999999999999888877775543

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=95.49  E-value=0.11  Score=54.60  Aligned_cols=124  Identities=15%  Similarity=0.148  Sum_probs=85.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccccchhhHHHHHHHHHHHHHHHHhhhhhhhhhcccCcc---c
Q 008096          401 RMGIGFVISVLATLVAGFVEMKRKQAALAHGLVDKPHIIIPISVLWLVPQYSLHGIAEAFMSVGHLEFLYDQAPES---M  477 (577)
Q Consensus       401 ~~~ig~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~gi~~~~~~~~~~~~v~~~~P~~---~  477 (577)
                      .+.+|.++..++.+++.....        .     +......+...+.++..+.++|.++.=|....+..|+.+++   .
T Consensus         3 tI~~g~~~~~~G~~ll~l~~~--------~-----~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~   69 (372)
T PF00854_consen    3 TILLGSIVYLLGHVLLTLSAI--------P-----PSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSR   69 (372)
T ss_dssp             HHHHHHHHHHHHHHH--HHHT--------S-----SSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTH
T ss_pred             hhhHHHHHHHHHHHHhHHHHh--------c-----chhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhh
Confidence            367788888888877555430        0     00011234456777888899999999999999999999876   4


Q ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhhhhhccccc
Q 008096          478 RSTATALFWTANSIGNYVSTLLVTLVHKFSAGPNGSNWLPDNNLNKGKLEYFYWLITLLQVVNVIYYFFCAKIYTFK  554 (577)
Q Consensus       478 rg~~~gi~~~~~~lg~~l~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  554 (577)
                      |..+...+..+.++|+.++..+.+++.+.                 .++.+.|.+.++..+++.+.++...++++.+
T Consensus        70 ~~~~F~~fY~~in~G~~~~~~~~~~i~~~-----------------~~~~~~f~i~~~~~~~~~~~f~~~~~~y~~~  129 (372)
T PF00854_consen   70 RDSFFNWFYWGINIGSLFSPTLVPYIQQN-----------------YGWFLGFGIPAIGMLLALIVFLSGRKRYRKV  129 (372)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCCCHHHHC-----------------S-HHHHHHHHHHHHHHHHHHHHCCCCTT--S
T ss_pred             hhhhHHHHHHHHhhhhHhhcccchhhccc-----------------cchhhhhhHHHHHHHHHHHHHHhCCcCCcCc
Confidence            56666677788999999999888776532                 2345667888888888888777776665554

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=95.34  E-value=5  Score=43.14  Aligned_cols=57  Identities=16%  Similarity=0.163  Sum_probs=48.4

Q ss_pred             hhHHHHHHHHHHHHHHHHhhhhhhhhhcccCcccHHHHHHHHHHHHhHHHHHHHHHH
Q 008096          444 VLWLVPQYSLHGIAEAFMSVGHLEFLYDQAPESMRSTATALFWTANSIGNYVSTLLV  500 (577)
Q Consensus       444 ~~~l~~~~~l~gi~~~~~~~~~~~~v~~~~P~~~rg~~~gi~~~~~~lg~~l~~~i~  500 (577)
                      -++.++..+++|+..|........+..+..+++.|..+..+...+-.+|-.+|..+.
T Consensus       372 d~~~~~~~~l~gltnGy~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l~  428 (437)
T TIGR00939       372 DAYFIILMLLFGFSNGYLGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVLS  428 (437)
T ss_pred             cHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344455678899999999999999999999999999999999988888888887774

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=95.20  E-value=0.02  Score=60.94  Aligned_cols=142  Identities=12%  Similarity=0.119  Sum_probs=99.1

Q ss_pred             hHHHHHHHHHhhhhhhhhccccccCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccccchhhH
Q 008096          367 TMVSMLSTIALYDRIIIPVARKFTGLDRGITFLHRMGIGFVISVLATLVAGFVEMKRKQAALAHGLVDKPHIIIPISVLW  446 (577)
Q Consensus       367 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ig~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  446 (577)
                      ....+.+...+.++    ++||...++      +.+..|.++++++.++++...                    ..+...
T Consensus        70 y~slVY~t~i~GG~----laDr~LG~~------~tI~lGail~~iGh~~L~~~~--------------------~~~~~g  119 (498)
T COG3104          70 YGSLVYLTPIIGGW----LADRVLGTR------RTIVLGAILMAIGHLVLAISS--------------------VSGPGG  119 (498)
T ss_pred             HHHHHHHHHHHHHH----HHHHhcchh------HHHHHHHHHHHHHHHHHhccc--------------------cccccH
Confidence            33444555555555    444443222      237888899999988776531                    024556


Q ss_pred             HHHHHHHHHHHHHHHhhhhhhhhhcccCcc--cHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCCcc
Q 008096          447 LVPQYSLHGIAEAFMSVGHLEFLYDQAPES--MRSTATALFWTANSIGNYVSTLLVTLVHKFSAGPNGSNWLPDNNLNKG  524 (577)
Q Consensus       447 l~~~~~l~gi~~~~~~~~~~~~v~~~~P~~--~rg~~~gi~~~~~~lg~~l~~~i~~~v~~~~~~~~~~~~~~~~~~~~~  524 (577)
                      +.+...+.++|.+..=+.....+.|..|++  .|-.+.+++.++.++|+.++|.+.+++.+..                 
T Consensus       120 l~i~L~~I~iG~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~~~-----------------  182 (498)
T COG3104         120 LYIGLALIIVGTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLAINY-----------------  182 (498)
T ss_pred             HHHHHHHHHhccccccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHHHhh-----------------
Confidence            677788888999999999999999998853  3666777778888999999999999975543                 


Q ss_pred             hhhHHHHHHHHHHHHHHHHHhhhhhcccccc
Q 008096          525 KLEYFYWLITLLQVVNVIYYFFCAKIYTFKP  555 (577)
Q Consensus       525 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  555 (577)
                      ++...|.+.++-..++++.+++..+..+...
T Consensus       183 g~~~gF~~aavGm~~gl~~f~~~~r~~~~~~  213 (498)
T COG3104         183 GWHVGFGLAAVGMIIGLVIFLLGRRHVKGIG  213 (498)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHccchhcCCC
Confidence            2345577778888888888888766555433

>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]

Probab=94.60  E-value=4.7  Score=43.50  Aligned_cols=64  Identities=17%  Similarity=0.200  Sum_probs=53.0

Q ss_pred             hHHHHHHHHHHHHHHHHhhhhhhhhhcccCcccHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcC
Q 008096          445 LWLVPQYSLHGIAEAFMSVGHLEFLYDQAPESMRSTATALFWTANSIGNYVSTLLVTLVHKFSA  508 (577)
Q Consensus       445 ~~l~~~~~l~gi~~~~~~~~~~~~v~~~~P~~~rg~~~gi~~~~~~lg~~l~~~i~~~v~~~~~  508 (577)
                      ..++...++..+.....+....++-++++.|.+-||+|.+.|+..++|+---..++-.+.|..+
T Consensus       406 ~lvI~~~~l~sf~stvmFVai~AFharISDP~IGGTYMTLLNTvSNLGGtWP~~~vL~lVD~fT  469 (544)
T PF13000_consen  406 LLVIIQHVLSSFMSTVMFVAIMAFHARISDPAIGGTYMTLLNTVSNLGGTWPRTFVLWLVDYFT  469 (544)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccchHHHHHHHHHHhcCCCchHHHHHHHhhhcc
Confidence            4455677778888888888899999999999999999999999999988777777677666543

This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=94.50  E-value=0.23  Score=53.32  Aligned_cols=113  Identities=22%  Similarity=0.303  Sum_probs=72.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccccchhhHHHHHHHHHHHHHHHHhhhhhhhhhccc---CcccH
Q 008096          402 MGIGFVISVLATLVAGFVEMKRKQAALAHGLVDKPHIIIPISVLWLVPQYSLHGIAEAFMSVGHLEFLYDQA---PESMR  478 (577)
Q Consensus       402 ~~ig~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~gi~~~~~~~~~~~~v~~~~---P~~~r  478 (577)
                      +.+|.++.+++.+.++....                  ...+........++..+|..+.-...-..+.|.+   |++ +
T Consensus        62 ~~i~~~~~~~~~~~~~~~~~------------------~~~s~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~-~  122 (433)
T PF03092_consen   62 MIIGWLLGAVSALVLALLPA------------------SESSAAIAVVLLFLASFGYAFADVAADALVVELARREPES-R  122 (433)
T ss_pred             HHHHHHHHHHHHHHHHhccc------------------ccchhhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCch-h
Confidence            77787777666666655440                  0112233344456667777777777776666665   444 8


Q ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhhhhhc
Q 008096          479 STATALFWTANSIGNYVSTLLVTLVHKFSAGPNGSNWLPDNNLNKGKLEYFYWLITLLQVVNVIYYFFCAKI  550 (577)
Q Consensus       479 g~~~gi~~~~~~lg~~l~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  550 (577)
                      |..++....++.+|+.++..+.|.+.+..                 +....|.+.+.+..+..+..+++.+|
T Consensus       123 g~lqS~~~~~~~~G~lv~~~l~G~l~~~~-----------------~~~~~f~i~~~~~~l~~~~~~~~~~e  177 (433)
T PF03092_consen  123 GDLQSFVWGVRSVGSLVGSLLSGPLLDSF-----------------GPQGVFLISAALPLLMLIVALFLLEE  177 (433)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhhhcC-----------------CCeEEehHHHHHHHHHHHHHHHhhhh
Confidence            89999999999999999999988765432                 11223556666666665555655554

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=93.93  E-value=0.22  Score=52.62  Aligned_cols=130  Identities=15%  Similarity=0.152  Sum_probs=93.8

Q ss_pred             cchhhhhhHHHHHHHHHhhhhhhhhccccccCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCc-
Q 008096          360 AGSMSVFTMVSMLSTIALYDRIIIPVARKFTGLDRGITFLHRMGIGFVISVLATLVAGFVEMKRKQAALAHGLVDKPHI-  438 (577)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ig~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-  438 (577)
                      .+.+....++..++.+|+.+...|+.-.|++||++    .  +..+....+++++++.+...    .  .+-++||+.. 
T Consensus        69 ~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRP----f--I~~~s~~i~~~l~Lig~aaD----i--g~~lgd~~~~~  136 (498)
T KOG0637|consen   69 SSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRP----F--ILAGSLLIAVSLFLIGYAAD----I--GLLLGDNERKP  136 (498)
T ss_pred             ccccccccccccceecccccccccccccccccccc----h--HHHhhHHHHHHHhhhhhHhh----h--hHHhcCCcccc
Confidence            34556667888889999999999999999998864    2  56677777788877776541    1  1223345443 


Q ss_pred             cccchhhHHHHHHHHHHHHHHHHhhhhhhhhhcccCcccHHH-HHHHHHHHHhHHHHHHHHHHH
Q 008096          439 IIPISVLWLVPQYSLHGIAEAFMSVGHLEFLYDQAPESMRST-ATALFWTANSIGNYVSTLLVT  501 (577)
Q Consensus       439 ~~~~~~~~l~~~~~l~gi~~~~~~~~~~~~v~~~~P~~~rg~-~~gi~~~~~~lg~~l~~~i~~  501 (577)
                      .........++.+-+.-+..-....++=++..|+.-++.+.+ +.+.+...-++|+.+|-.+.+
T Consensus       137 ~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~avGnvLGY~~g~  200 (498)
T KOG0637|consen  137 VKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFFMAVGNVLGYALGS  200 (498)
T ss_pred             cchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHHHHhcceeeeeccc
Confidence            333444455566666777777777888889999987777777 999999999999999877744

>KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only]

Probab=93.82  E-value=1.8  Score=43.57  Aligned_cols=158  Identities=12%  Similarity=0.125  Sum_probs=87.1

Q ss_pred             eehHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---------CC-----hHHHHHHHHHHhHhhhhchhhhhhhhhhccch
Q 008096           18 TMPFIFANEVCEKLAVVGFHANMISYLTTQLH---------MP-----LTKAANTLTNFGGTGSLTPLIGAFVADTYAGR   83 (577)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~lg---------~s-----~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr   83 (577)
                      .........+|+++.|..+..---.-+.++.+         .|     ....+.+..+=.+-..+..+..-.+-||+ -.
T Consensus        13 ~~~~FwllGLcNN~~YVvmLSAA~DIl~~~~~~~~~~c~~h~~~r~c~~~stg~VLLaDilPsL~iKl~~Pff~~rf-pf   91 (409)
T KOG3880|consen   13 IAVAFWLLGLCNNYGYVVMLSAAEDILSEQVSDPGPTCIPHNSGRECQSVSTGAVLLADILPSLAIKLTAPFFIHRF-PF   91 (409)
T ss_pred             cchHHHHHHHhcccceEeehhhhhhhhccccCCCCCCcccccccccccccccchhhhhhhhHHHHHHHhchhhhhhc-cc
Confidence            34445567788888876554443333333332         00     11134455555556666667777888887 32


Q ss_pred             hHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCcccccccchhHHHHHHHHHHHhccCCcccchhhhhhccCCCCCc
Q 008096           84 FWTITVASIIYQIGMFSLTLSAILPQLRPPPCQGDQVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDP  163 (577)
Q Consensus        84 k~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~  163 (577)
                      -+-+.+..++.+.+..+.+++.                      +.+.-+++..+..++.|.-...-.++-+ .+|... 
T Consensus        92 ~~Ri~~~v~~sa~s~~lVafs~----------------------s~~~sL~GV~~aSissGlGEiTFL~lss-~Y~~~~-  147 (409)
T KOG3880|consen   92 GFRIALVVLLSALSFFLVAFSN----------------------SVPMSLLGVVFASISSGLGEITFLALSS-RYPSIV-  147 (409)
T ss_pred             chHHHHHHHHHhcceEEEEecc----------------------chhHHHhhhhhhhhcCCcceeehhhhhc-cCCCce-
Confidence            2223334455566767777665                      5666888888888888887666666544 355433 


Q ss_pred             hhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhccc--ccchhhhHHHHH
Q 008096          164 KQATKTWKYFNWYYFVMGAAVLVAVTVLVYIQDN--VGWNWGLGIPTV  209 (577)
Q Consensus       164 ~~~~~r~~~~~~~~~~~~ig~~lg~~i~~~l~~~--~gw~~~f~~~~~  209 (577)
                               .+....+..-++++|..--..+.+.  ++-+....+...
T Consensus       148 ---------i~~WSSGTGgAGliGa~SYa~lT~~~~~spk~Tlli~l~  186 (409)
T KOG3880|consen  148 ---------IAGWSSGTGGAGLIGASSYAFLTSWANLSPKSTLLIMLF  186 (409)
T ss_pred             ---------eccccCCCCcchhhhhhHHHHHhhhcCCChhhHHHHHHH
Confidence                     3333333344455554444445442  344445544443

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=92.96  E-value=1.9  Score=46.08  Aligned_cols=138  Identities=12%  Similarity=0.021  Sum_probs=104.0

Q ss_pred             HHHHHHHHHHHHhcCCChHHHHHHHHHHhHhhhhchhhhhhhhhhccchhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCC
Q 008096           35 GFHANMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADTYAGRFWTITVASIIYQIGMFSLTLSAILPQLRPPP  114 (577)
Q Consensus        35 ~~~~~l~~~l~~~lg~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  114 (577)
                      +.-..+..|+..+ |+|..+.|..-+...+.+..+.....++.+|+ |-.|+=.++......+..++..+-..|.     
T Consensus       276 sf~~lmt~yl~~~-G~s~~~igi~R~~gav~Gl~gT~~~p~l~~ri-Glvr~G~~~l~~q~~~L~~~v~~~~~~~-----  348 (432)
T PF06963_consen  276 SFGGLMTAYLKSQ-GYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRI-GLVRAGLWSLWWQWVCLALCVVSFWAPG-----  348 (432)
T ss_pred             cCcHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchhhHHHHHHHHHHHHHHHHHHHhcCC-----
Confidence            3345577888766 99999999999999999999999999999998 9988888887776666665554432222     


Q ss_pred             CCCCCcccccccchhHHHHHHHHHHHhccCCcccchhhhhhccCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 008096          115 CQGDQVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAVLVAVTVLV  192 (577)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~lg~~i~~  192 (577)
                             ...+..+...++.+..+.=+|.=++=-+..-++.|..|+++      |+...+..+...++.-.+...++-
T Consensus       349 -------~~~~~~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~------Rg~v~gvq~sl~~lf~ll~~~~~i  413 (432)
T PF06963_consen  349 -------SPFSSISAYLLLGGIALSRIGLWSFDLAVTQIMQENVPESE------RGAVSGVQNSLQSLFELLSFVLTI  413 (432)
T ss_pred             -------CCchhhHHHHHHHHHHHHHHHHHhhhHHHHHhhcccCCHHH------hhHHHHHHHHHHHHHHHHHHHHHh
Confidence                   00012355556666666666666666777888999999888      999999999999998888765543

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>KOG2601 consensus Iron transporter [Inorganic ion transport and metabolism]

Probab=92.87  E-value=3.6  Score=42.56  Aligned_cols=84  Identities=11%  Similarity=-0.017  Sum_probs=55.9

Q ss_pred             ceehHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhHhhhhchhhhhhhhhhccchhHHHHHHHHHHHH
Q 008096           17 ITMPFIFANEVCEKLAVVGFHANMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADTYAGRFWTITVASIIYQI   96 (577)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~lg~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~i   96 (577)
                      +..+++.+..+..++.--+...-...||..=.|=|..-.+.-...-+....+..++.|..-|+. .|+|++...+.+.=+
T Consensus        27 ~~~i~Ly~gy~lt~wgdR~W~F~VsL~M~~L~gnsl~lvAvyglvesgs~lvlg~ivGq~vDg~-sr~Kvi~~~L~lqNl  105 (503)
T KOG2601|consen   27 STVIFLYLGYFLTTWGDRMWEFSVSLFMILLGGNSLLLVAVYGLVESGSQLVLGPIVGQWVDGM-SRVKVIQTWLLLQNL  105 (503)
T ss_pred             ceeehhhHHHHHhHhhHhHHHHHHHHHHHHHcCceehhHHHHHHHHHhHHHhhHHHHHHHhcch-hHHHHHHHHHhhccH
Confidence            4456667777777666666666667788654453444444444455566677778888899997 999999888776444


Q ss_pred             HHHHH
Q 008096           97 GMFSL  101 (577)
Q Consensus        97 ~~~~~  101 (577)
                      +.+.+
T Consensus       106 Sv~va  110 (503)
T KOG2601|consen  106 SVIVA  110 (503)
T ss_pred             HHHHH
Confidence            44333

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=92.55  E-value=2.4  Score=38.59  Aligned_cols=61  Identities=18%  Similarity=0.305  Sum_probs=52.6

Q ss_pred             hhhHHHHHHHHHHHHHHHHhhhhhhhhhcccCcccHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 008096          443 SVLWLVPQYSLHGIAEAFMSVGHLEFLYDQAPESMRSTATALFWTANSIGNYVSTLLVTLV  503 (577)
Q Consensus       443 ~~~~l~~~~~l~gi~~~~~~~~~~~~v~~~~P~~~rg~~~gi~~~~~~lg~~l~~~i~~~v  503 (577)
                      +.+.+++.-++.|++.+......-.++.+..+++.+++-.|++......+..+|..+.-.+
T Consensus        88 ~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~~  148 (156)
T PF05978_consen   88 NSYTLYPASALLGFGAALLWTAQGTYLTSYSTEETIGRNTGIFWAIFQSSLIFGNLFLFFI  148 (156)
T ss_pred             hHHHHHHHHHHHhhhhHHhhHhhhHHHHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5667788889999999999988888999999999999999999999888888887775443

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions

Probab=92.40  E-value=8.1  Score=42.12  Aligned_cols=136  Identities=7%  Similarity=-0.032  Sum_probs=77.4

Q ss_pred             ChHHHHHHHHHHhH-hhhhchhhhhhhhhhccchhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCccccc---cc
Q 008096           51 PLTKAANTLTNFGG-TGSLTPLIGAFVADTYAGRFWTITVASIIYQIGMFSLTLSAILPQLRPPPCQGDQVCKEA---DT  126 (577)
Q Consensus        51 s~~~~~~i~~~~~~-~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~  126 (577)
                      .+.....+-....+ .+.+...+-.+++|++ +|.+.+-+....+..-..+.++.- +|.  .+.-|++..+...   .+
T Consensus        56 gae~I~flK~~~vlP~a~~f~~~y~kl~n~~-s~~~lFy~~~~~F~~fF~~f~~vl-yP~--~~~lhp~~~~~~~~~~~~  131 (491)
T PF03219_consen   56 GAEVIPFLKVWGVLPVAILFTILYSKLSNRL-SREKLFYIIIIPFLGFFALFAFVL-YPN--RDILHPDAFADKLLAILP  131 (491)
T ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHHHHHH-hhc--hhhcCCCHHHHHhhhhcc
Confidence            44444444443333 5556677889999998 999988776666665555555543 231  1112233222110   01


Q ss_pred             ch---------hHHHHHHHHHHHhccCCccc-chhhhhhccCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhcc
Q 008096          127 GQ---------LAILYASLLLAALGSGGIRP-CVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAVLVAVTVLVYIQD  196 (577)
Q Consensus       127 ~~---------~~~~~~~~~l~g~g~g~~~~-~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~lg~~i~~~l~~  196 (577)
                      ..         .|...+.-++.-+=.....+ .-+++..|.++.+|      -.+.+++++.+.|+|.+++..+..++.+
T Consensus       132 ~~~~~~i~~~~~Wt~slfYv~aElwgsvvlSlLFW~fAN~itt~~e------AKRfYpl~g~ganigli~sG~~~~~~~~  205 (491)
T PF03219_consen  132 PGFKGFIAMFRNWTFSLFYVMAELWGSVVLSLLFWGFANEITTVEE------AKRFYPLFGLGANIGLIFSGQLTSYFSS  205 (491)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            11         11111111111111111122 34788899998777      6678999999999999999888877766

One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=91.71  E-value=7.4  Score=42.21  Aligned_cols=58  Identities=12%  Similarity=0.033  Sum_probs=47.7

Q ss_pred             HHHHHHHHHHHHHhh-hhhhhhhcccCcccHHHHHHHHHHHHhHHHHHHHHHHHHHhhh
Q 008096          449 PQYSLHGIAEAFMSV-GHLEFLYDQAPESMRSTATALFWTANSIGNYVSTLLVTLVHKF  506 (577)
Q Consensus       449 ~~~~l~gi~~~~~~~-~~~~~v~~~~P~~~rg~~~gi~~~~~~lg~~l~~~i~~~v~~~  506 (577)
                      ..++...+...+... ..|.++.|....++-.+..++....+++|..+++.+...+.+.
T Consensus       133 ~FYv~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~~~  191 (472)
T TIGR00769       133 LFYVMAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFSKL  191 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            445555555555554 8899999999999999999999999999999999998887653

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism]

Probab=91.66  E-value=0.54  Score=48.01  Aligned_cols=95  Identities=6%  Similarity=-0.009  Sum_probs=54.7

Q ss_pred             hhhHHHHHHHHHHHHHHHHhhhhhhhhhcccCcccHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCC
Q 008096          443 SVLWLVPQYSLHGIAEAFMSVGHLEFLYDQAPESMRSTATALFWTANSIGNYVSTLLVTLVHKFSAGPNGSNWLPDNNLN  522 (577)
Q Consensus       443 ~~~~l~~~~~l~gi~~~~~~~~~~~~v~~~~P~~~rg~~~gi~~~~~~lg~~l~~~i~~~v~~~~~~~~~~~~~~~~~~~  522 (577)
                      +.|+..+.+++...-..+..+....-+++....+.-|...|++.++.-+   +=+++.-.+.|..+.+      .+--.+
T Consensus       325 ~Iw~~Ya~yvlfr~~y~l~itiA~~~iA~nL~~e~~gLvFGiNTFvAl~---lQsilT~iVvd~~g~~------L~ir~Q  395 (433)
T KOG3810|consen  325 HIWVCYAGYVLFRVIYQLTITIATFQIARNLSSELFGLVFGINTFVALI---LQSILTLIVVDDRGLG------LDIRTQ  395 (433)
T ss_pred             ceehhhhhHHHHHhhHhhhhhHHHHHHHHhhhhhhheeeeehHHHHHHH---HHHhheEEEEcccccC------CCccee
Confidence            6777888888887777777777777777776777778888876654332   2222222233322110      000011


Q ss_pred             cchhhHHHHHHHHHHHHHHHHHhh
Q 008096          523 KGKLEYFYWLITLLQVVNVIYYFF  546 (577)
Q Consensus       523 ~~~~~~~~~~~~~~~~~~~i~~~~  546 (577)
                      ..-+..+|.+++++.++...+.+.
T Consensus       396 ~~~Y~~Yf~v~~~i~~~~~~~~~~  419 (433)
T KOG3810|consen  396 FVVYSSYFIVLGVIFLIGFGIEYL  419 (433)
T ss_pred             EEEEeehHHHHHHHHHHHHHHHHH
Confidence            122345677777777777655443

>KOG3097 consensus Predicted membrane protein [Function unknown]

Probab=90.90  E-value=2.8  Score=42.64  Aligned_cols=113  Identities=12%  Similarity=0.116  Sum_probs=70.1

Q ss_pred             eehHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhHhhhhchhhhhhhhhhccchhHHHHHHHHHHHHH
Q 008096           18 TMPFIFANEVCEKLAVVGFHANMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADTYAGRFWTITVASIIYQIG   97 (577)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~lg~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~i~   97 (577)
                      .-..++-..+...+..|.-..++......++|  ....+.+.......    +++.+.+..++ |.|.++.++...+...
T Consensus        29 knv~i~s~~fl~~f~a~~gl~nlq~~vn~~lg--~~sl~~~y~~l~~s----~m~~~~~Ir~~-g~K~tm~lav~~Y~ly  101 (390)
T KOG3097|consen   29 KNVLILSIAFLLTFTAYLGLQNLQTSVNYDLG--TVSLGALYLSLIDS----SMFMPLLIRFL-GTKWTMVLAVFPYALY  101 (390)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHhcCcc--cchhhhhhHHHHHH----HHHHHHHHHHH-hhHHHHHHHHHHHHHH
Confidence            33445556666666667666666665554333  33333333333333    33444666665 9999999887665542


Q ss_pred             HHHHHHhhhcCCCCCCCCCCCCcccccccchhHHHHHHHHHHHhccCCcccchhhhhhccCCC
Q 008096           98 MFSLTLSAILPQLRPPPCQGDQVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDE  160 (577)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~  160 (577)
                           .+.++.                  +.+..++-+-...|+|.+..+.+--+|++++-..
T Consensus       102 -----iA~Nl~------------------pr~~tlVPa~~~~G~aa~p~W~SkgtYlT~~g~~  141 (390)
T KOG3097|consen  102 -----IAANLE------------------PRYETLVPAGLVLGMAAGPIWASKGTYLTPMGQN  141 (390)
T ss_pred             -----HHhhcc------------------hhHHhhccHHHhhccccccccccCcceecHHHHH
Confidence                 233222                  2566777778889999999998888888776543

>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]

Probab=90.79  E-value=24  Score=37.20  Aligned_cols=57  Identities=21%  Similarity=0.225  Sum_probs=46.7

Q ss_pred             hhhHHHHHHHHHHHHHHHHhhhhhhhhhcccCcccHHHHHHHHHHHHhHHHHHHHHH
Q 008096          443 SVLWLVPQYSLHGIAEAFMSVGHLEFLYDQAPESMRSTATALFWTANSIGNYVSTLL  499 (577)
Q Consensus       443 ~~~~l~~~~~l~gi~~~~~~~~~~~~v~~~~P~~~rg~~~gi~~~~~~lg~~l~~~i  499 (577)
                      +-++.+....++|+..+-.......+..+..|++.+-.+..+....-..|-.+|..+
T Consensus       342 ~~~~~~~l~~~lglsnGYltsl~m~~aPk~v~~~e~e~aG~~m~~fl~~Gl~~G~~~  398 (406)
T KOG1479|consen  342 SDGWFIFLMSLLGLSNGYLTSLIMMYAPKQVKPSEKEAAGNLMVFFLVGGLALGSLL  398 (406)
T ss_pred             CchHHHHHHHHHHhccchHhhheehhcCCCCChHHHHHHHHHHHHHHHHHHHHhhHH
Confidence            445666677889999998888999999999999999988888887777777777655

>COG3202 ATP/ADP translocase [Energy production and conversion]

Probab=90.72  E-value=27  Score=37.67  Aligned_cols=166  Identities=8%  Similarity=-0.023  Sum_probs=98.4

Q ss_pred             CCCcceehHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---ChHHHHHHHHHHhH-hhhhchhhhhhhhhhccchhHHHH
Q 008096           13 KGGIITMPFIFANEVCEKLAVVGFHANMISYLTTQLHM---PLTKAANTLTNFGG-TGSLTPLIGAFVADTYAGRFWTIT   88 (577)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~lg~---s~~~~~~i~~~~~~-~~~~~~~~~G~laDr~~Grk~~~~   88 (577)
                      |.-++.++.+.+..+|-.+.++.+..     +.|.+.+   .+.....+-+.... .+.+..++-+++.+++ .|.+++-
T Consensus        23 r~E~~kflpl~Ll~f~I~~ny~~lR~-----lKDslvv~~~gae~I~FlK~~~vlP~avif~~iy~kl~~~l-t~~~vF~   96 (509)
T COG3202          23 RYELKKFLPLALLFFCILFNYNLLRS-----LKDSLVVTRQGAESISFLKTWGVLPSAVIFTIIYQKLLNIL-TREKVFY   96 (509)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-----hhhheEeecCcchhhHHHHHHHhchHHHHHHHHHHHHHhhc-CHHHHHH
Confidence            44555666666666666555443322     3444543   44455555555555 6677888899999998 9999988


Q ss_pred             HHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCc--------c--------cccccchhHHHHHHHHHHHhccCCccc-chh
Q 008096           89 VASIIYQIGMFSLTLSAILPQLRPPPCQGDQV--------C--------KEADTGQLAILYASLLLAALGSGGIRP-CVV  151 (577)
Q Consensus        89 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~--------~--------~~~~~~~~~~~~~~~~l~g~g~g~~~~-~~~  151 (577)
                      +-+..+....+++++.- .|.  ...-|++..        .        ...+.++...+++.-=+.|   ....+ .-.
T Consensus        97 ~~~~~F~~fF~LFa~Vi-~P~--~~~~hp~~~~~~~~~~~~p~~l~~~ili~~~Ws~s~~Yi~aELWg---slV~S~lFw  170 (509)
T COG3202          97 IILGFFLGFFALFAFVI-YPY--KDILHPDPEFSRDLFADLPMFLKWFILIVGEWSYSLFYIMAELWG---SLVLSLLFW  170 (509)
T ss_pred             HHHHHHHHHHHHHHHHH-hcc--ccccCCCHHHHHHHHhhCCccceeeeEeecchHHHHHHHHHHHHH---HHHHHHHHH
Confidence            88877777777777765 332  111122200        0        0011112222222211111   11111 335


Q ss_pred             hhhhccCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhcc
Q 008096          152 AFGADQFDETDPKQATKTWKYFNWYYFVMGAAVLVAVTVLVYIQD  196 (577)
Q Consensus       152 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~lg~~i~~~l~~  196 (577)
                      ....|....+|      -.+.++.++.+.|++..++..+..++..
T Consensus       171 ~faNeitt~~e------akRFy~lf~l~~ni~lllsg~~~~~~~k  209 (509)
T COG3202         171 QFANEITTIEE------AKRFYPLFGLGANISLLLSGEVTSWLSK  209 (509)
T ss_pred             HHHHHhhhHHH------hhhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            66778777766      6688999999999999999888887765

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=90.62  E-value=1.8  Score=45.73  Aligned_cols=61  Identities=10%  Similarity=0.004  Sum_probs=53.0

Q ss_pred             hhHHHHHHHHHHHhccCCcccchhhhhhccCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHHHHHhh
Q 008096          128 QLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAVLVAVTVLVYI  194 (577)
Q Consensus       128 ~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~lg~~i~~~l  194 (577)
                      +.+..++..+.-|+..|..+.+....+.|..|+++      |..+++...++-.+|..+|.+++-++
T Consensus       334 si~ivf~lif~eGLlGGa~YVNtF~~I~~~~~~~~------REFslg~vsvsds~GI~lAgll~l~l  394 (402)
T PF02487_consen  334 SIWIVFVLIFYEGLLGGASYVNTFYRISEEVPPED------REFSLGAVSVSDSLGILLAGLLGLPL  394 (402)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCHHH------HHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            67778888888999999999999999999888776      99999999999999999988776554

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=89.86  E-value=4.8  Score=43.33  Aligned_cols=112  Identities=20%  Similarity=0.145  Sum_probs=71.0

Q ss_pred             Hhhhhchhhhhhhh---hhccchhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCcccccccchhHHHHHHHHHHH
Q 008096           64 GTGSLTPLIGAFVA---DTYAGRFWTITVASIIYQIGMFSLTLSAILPQLRPPPCQGDQVCKEADTGQLAILYASLLLAA  140 (577)
Q Consensus        64 ~~~~~~~~~~G~la---Dr~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g  140 (577)
                      .+..++.++.+.++   +++ ||++++.++..+..++.++.-+..  |.- +| -.+.+.-..-.+++..+.++.-+++|
T Consensus       290 ~g~v~~g~~~~~l~~rir~f-g~~~~~~~~~~~~~~~~~li~l~~--p~d-ap-~~~t~~~~~~~~~~~~~~~ii~~l~G  364 (461)
T KOG3098|consen  290 LGEVIGGLDFSILSKRIRGF-GRKPTVLIGIIIHLIGFLLIHLSF--PND-AP-LRPTDSPPLLFTPSYYLALIIGFLLG  364 (461)
T ss_pred             HHHHHHHHHHHHHhhhhhhc-ccCcchhHHHHHHHHHHHHHhccc--ccc-CC-CCCCcccccccccchhHHHHHHHHHh
Confidence            33444455555555   455 899999999888777766665543  320 00 11112222223345667777788999


Q ss_pred             hccCCcccchhhhhhccCCCCCchhhhhhhhhhhHHHHHHHHHHHHH
Q 008096          141 LGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAVLVA  187 (577)
Q Consensus       141 ~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~lg  187 (577)
                      ++-+..+...+..+++.+| ++      |..+++++..-..++..++
T Consensus       365 ~~D~~~~t~~~~ii~~~~~-~~------~~~~fsi~kfyq~~~s~v~  404 (461)
T KOG3098|consen  365 FGDACFNTQRYVIIALLYP-DD------RAQAFSLFKFYQSVASCVA  404 (461)
T ss_pred             hHHHHHHHHHHHHHHHHhc-Cc------hHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999995 44      6666777655555555444

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=89.81  E-value=12  Score=39.75  Aligned_cols=81  Identities=21%  Similarity=0.249  Sum_probs=58.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccccchhhHHHHHHHHHHHHHHHHhhhhhhhhhcccCcccHHHH
Q 008096          402 MGIGFVISVLATLVAGFVEMKRKQAALAHGLVDKPHIIIPISVLWLVPQYSLHGIAEAFMSVGHLEFLYDQAPESMRSTA  481 (577)
Q Consensus       402 ~~ig~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~gi~~~~~~~~~~~~v~~~~P~~~rg~~  481 (577)
                      ++.+.+...+...++.+..                      +..++-+..++.|++... -...++|+...+|++.--.+
T Consensus        74 iil~~~~~i~t~~lll~~~----------------------sv~~mq~~q~~yg~~~a~-evay~sYiys~v~~~~yq~v  130 (412)
T PF01770_consen   74 IILQALSYIITWLLLLFGT----------------------SVLAMQLMQFFYGLATAA-EVAYYSYIYSVVDKEHYQKV  130 (412)
T ss_pred             HHHHHHHHHHHHHHHHHHC----------------------cHHHHHHHHHHHHHHHHH-HHHHHHHheeecCHHHHHHH
Confidence            6666666666655555544                      666666677777777443 56677899999999888888


Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHhh
Q 008096          482 TALFWTANSIGNYVSTLLVTLVHK  505 (577)
Q Consensus       482 ~gi~~~~~~lg~~l~~~i~~~v~~  505 (577)
                      ++....+.-+|..++..+...+..
T Consensus       131 ts~~raa~l~g~~~s~~lgQllvs  154 (412)
T PF01770_consen  131 TSYTRAATLVGRFISSLLGQLLVS  154 (412)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            988888888888888777666543

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=86.88  E-value=35  Score=35.40  Aligned_cols=93  Identities=12%  Similarity=0.005  Sum_probs=47.9

Q ss_pred             hhhHHHHHHHHHHHHHHHHhhhhhhh-----hhcccCcccHHHHHHHHH-HHHhHHHHHHHHHHHHHhhhcCCCCCCCCC
Q 008096          443 SVLWLVPQYSLHGIAEAFMSVGHLEF-----LYDQAPESMRSTATALFW-TANSIGNYVSTLLVTLVHKFSAGPNGSNWL  516 (577)
Q Consensus       443 ~~~~l~~~~~l~gi~~~~~~~~~~~~-----v~~~~P~~~rg~~~gi~~-~~~~lg~~l~~~i~~~v~~~~~~~~~~~~~  516 (577)
                      +...+++.-++.|++....+...-+.     -.+-.|++..+...+... ..+.+-..++..+.-.+.+..+.+.     
T Consensus       120 ~~~~L~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~-----  194 (354)
T PF05631_consen  120 NYPVLLLGRVLGGIATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGP-----  194 (354)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCC-----
Confidence            56667778888888887777764443     223345554444444333 2334444444444434333222110     


Q ss_pred             CCCCCCcchhhHHHHHHHHHHHHHHHHHhhhhhc
Q 008096          517 PDNNLNKGKLEYFYWLITLLQVVNVIYYFFCAKI  550 (577)
Q Consensus       517 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  550 (577)
                                ..-|.....+.+++.++....++|
T Consensus       195 ----------vaPF~~a~~~l~~~~~~I~~~W~E  218 (354)
T PF05631_consen  195 ----------VAPFDAAIVLLAVAAVLILKTWPE  218 (354)
T ss_pred             ----------cchHHHHHHHHHHHHHHHHhcccc
Confidence                      112556666666666655554444

>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=86.75  E-value=4.3  Score=40.19  Aligned_cols=141  Identities=10%  Similarity=0.041  Sum_probs=88.2

Q ss_pred             HHHHHHHHhHhhhhchhhhhhhhhhccchh--HHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCcccccccchhHHH
Q 008096           55 AANTLTNFGGTGSLTPLIGAFVADTYAGRF--WTITVASIIYQIGMFSLTLSAILPQLRPPPCQGDQVCKEADTGQLAIL  132 (577)
Q Consensus        55 ~~~i~~~~~~~~~~~~~~~G~laDr~~Grk--~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (577)
                      -|.+.+.+....++++-+..++..|- ..|  +.+.+..++......+..+.. ..       .|+       ..+...-
T Consensus       284 hGfiFatFMlASmLGSSla~Rl~s~s-~~~ve~ymqivf~vs~a~l~Lpilt~-~v-------sP~-------kes~~~s  347 (454)
T KOG4332|consen  284 HGFIFATFMLASMLGSSLASRLLSRS-SPKVESYMQIVFLVSIAALLLPILTS-SV-------SPS-------KESPSES  347 (454)
T ss_pred             chhHHHHHHHHHHHhhHHHHHHHhcC-CcccchHHHHHHHHHHHHHHHHHHHh-cc-------CCC-------cCCchHH
Confidence            37788888888888888777777653 222  234444433333333333222 11       111       1234445


Q ss_pred             HHHHHHHHhccCCcccchhhhhhccCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHH
Q 008096          133 YASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAVLVAVTVLVYIQDNVGWNWGLGIPTVAMF  212 (577)
Q Consensus       133 ~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~lg~~i~~~l~~~~gw~~~f~~~~~~~~  212 (577)
                      +++..+.-.+.|.++|...-+=.+..|+++      |+..++++..-.++-..++-...-.=..-.+-|..|.++.+.+.
T Consensus       348 ~i~F~~~E~cvGlfwPSimkmRsqyIPEea------rstimNfFRvPLnifvClvLynlh~~~~p~~tr~mf~icS~~~~  421 (454)
T KOG4332|consen  348 LIGFCLFEACVGLFWPSIMKMRSQYIPEEA------RSTIMNFFRVPLNIFVCLVLYNLHVDAFPTTTRNMFGICSAFLF  421 (454)
T ss_pred             HHHHHHHHHHHhhcchHHHHHHHhhCCHHH------HhhhhhheechhhHhhhhhheecccccCccccchhhhhhHHHHH
Confidence            777788888999999999999999999988      99999999888887655432110000111356677888877776


Q ss_pred             HHHHH
Q 008096          213 LSIIA  217 (577)
Q Consensus       213 ~~~~~  217 (577)
                      ++.+.
T Consensus       422 ~a~i~  426 (454)
T KOG4332|consen  422 VASIL  426 (454)
T ss_pred             HHHHH
Confidence            66554

>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS)

Probab=85.68  E-value=12  Score=36.96  Aligned_cols=56  Identities=11%  Similarity=0.202  Sum_probs=34.4

Q ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHhh---cc--cccchhhhHHHHHHHHHHHHHHHHcccc
Q 008096          169 TWKYFNWYYFVMGAAVLVAVTVLVYI---QD--NVGWNWGLGIPTVAMFLSIIAFVFGYPL  224 (577)
Q Consensus       169 r~~~~~~~~~~~~ig~~lg~~i~~~l---~~--~~gw~~~f~~~~~~~~~~~~~~~~~~~~  224 (577)
                      |+....+..++.++|+++.-+..-.-   .+  .-.|++.+.+.+++.++-+++.....++
T Consensus         4 K~~~s~~n~~gf~iG~ii~~ipF~~~~~~~~~~~~~W~~I~si~~lL~~IpLIly~ifGk~   64 (267)
T PF07672_consen    4 KSILSQFNPWGFNIGTIIVNIPFLISSSVVIALTNNWQWILSIFILLIFIPLILYIIFGKN   64 (267)
T ss_pred             cceeeeeccccchhhHHHHHhhHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            66667777778888888875442211   11  1249888877777666655555554443

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=85.67  E-value=8.8  Score=37.24  Aligned_cols=62  Identities=23%  Similarity=0.209  Sum_probs=48.0

Q ss_pred             hhHHHHHHHHHHHHHHHHhhhhhhhhhcccCc-ccHHHHHHHHHH-HHhHHHHHHHHHHHHHhh
Q 008096          444 VLWLVPQYSLHGIAEAFMSVGHLEFLYDQAPE-SMRSTATALFWT-ANSIGNYVSTLLVTLVHK  505 (577)
Q Consensus       444 ~~~l~~~~~l~gi~~~~~~~~~~~~v~~~~P~-~~rg~~~gi~~~-~~~lg~~l~~~i~~~v~~  505 (577)
                      .+.+.......+++.+...+....++.+..|+ +.|+...+.... ...+|..+++.+.+.+..
T Consensus        94 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (338)
T COG0477          94 LALLLILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLG  157 (338)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44445555558888888999999999999998 678998888887 577788888877666544

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	577
2xut_A	524	Crystal Structure Of A Proton Dependent Oligopeptid		8e-16

>pdb|2XUT|A Chain A, Crystal Structure Of A Proton Dependent Oligopeptide (Pot) Family Transporter. Length = 524

Iteration: 1
 Score = 82.0 bits (201), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 116/497 (23%), Positives = 204/497 (41%), Gaps = 78/497 (15%)
Query: 19  MPFIFANEVCEKLAVVGFHANMISYLTTQLHMPLTK------AANTLTNFGGTGSLTPLI 72
           +P+I A+E CE+ +  G    +  +L T L + + +      A +   +F       PL+
Sbjct: 14  IPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLL 73
Query: 73  GAFVADTYAGRFWTITVASIIYQIGMFSLTLSAILPQLRPPPCQGDQVCKEADTXXXXXX 132
           G ++AD + G++ TI   S+IY +G   L   AI         QG               
Sbjct: 74  GGWIADRFFGKYNTILWLSLIYCVGHAFL---AIFEH----SVQG--------------F 112
Query: 133 XXXXXXXXXXXXXXRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGXXXXXXXXXXX 192
                         +P V +F  DQFD+++   A K    F+ +YF +            
Sbjct: 113 YTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKA---FDMFYFTINFGSFFASLSMP 169
Query: 193 YIQDNVGWNWGLGIPTVAMFLSIIAFVFGYPLYRNLNPAGSPFVRLMQVCVAAFR----- 247
            +  N G     GIP V MF++ + F  G   Y ++ P        + V  +A       
Sbjct: 170 LLLKNFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPPEPKDPHGFLPVIRSALLTKVEG 229
Query: 248 KRNLDMV-------SDPNVLYQNEELD--ASICLDGKLLHTKHMKFLDKAAIVTEEDDIK 298
           K N+ +V       S    L     L   A +C    L+    M F+   A +  E   K
Sbjct: 230 KGNIGLVLALIGGVSAAYALVNIPTLGIVAGLCCAMVLV----MGFVGAGASLQLERARK 285
Query: 299 S-PNLWRLNTVHRVEELKSVIRMGPIWASGILLITAYAQQGTFSLQQAKSMDRHLTKSFQ 357
           S P+         V+ ++SV+R+  ++A      + + Q+ +  + QA  M +   + F+
Sbjct: 286 SHPD-------AAVDGVRSVLRILVLFALVTPFWSLFDQKASTWILQANDMVK--PQWFE 336
Query: 358 IPAGSMSVFTMVSMLSTIALYDRIIIPVARKFTGLDRGITFLHRMGIGFVISVLATLVAG 417
            PA   ++  ++ ML  I   + ++ P   +   +   +T L +MG G  I+ L+ +V G
Sbjct: 337 -PAMMQALNPLLVML-LIPFNNFVLYPAIER---MGVKLTALRKMGAGIAITGLSWIVVG 391
Query: 418 FVEMKRKQAALAHGLVDKPHIIIPISVLWLVPQYSLHGIAEAFMSVGHLEFLYDQAPESM 477
            +++     +              +S+ W +  Y+L    E  +S   LEF Y QAP++M
Sbjct: 392 TIQLMMDGGS-------------ALSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAM 438
Query: 478 RSTATALFWTAN-SIGN 493
           + T  + FWT + ++GN
Sbjct: 439 KGTIMS-FWTLSVTVGN 454

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	577
2xut_A	524	Proton/peptide symporter family protein; transport	1e-147
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	3e-23

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} Length = 524

 Score =  434 bits (1118), Expect = e-147
 Identities = 110/562 (19%), Positives = 220/562 (39%), Gaps = 62/562 (11%)

Query: 19  MPFIFANEVCEKLAVVGFHANMISYLTTQLH------MPLTKAANTLTNFGGTGSLTPLI 72
           +P+I A+E CE+ +  G    +  +L T L       +    A +   +F       PL+
Sbjct: 14  IPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLL 73

Query: 73  GAFVADTYAGRFWTITVASIIYQIGMFSLTLSAILPQLRPPPCQGDQVCKEADTGQLAIL 132
           G ++AD + G++ TI   S+IY +G   L +                         +   
Sbjct: 74  GGWIADRFFGKYNTILWLSLIYCVGHAFLAIFE---------------------HSVQGF 112

Query: 133 YASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAVLVAVTVLV 192
           Y  L L ALGSGGI+P V +F  DQFD+++   A    K F+ +YF +      A   + 
Sbjct: 113 YTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLA---QKAFDMFYFTINFGSFFASLSMP 169

Query: 193 YIQDNVGWNWGLGIPTVAMFLSIIAFVFGYPLYRNLNPAGSPFVRLMQVCVAAFRKRNLD 252
            +  N G     GIP V MF++ + F  G   Y ++ P        + V  +A   + ++
Sbjct: 170 LLLKNFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPPEPKDPHGFLPVIRSALLTK-VE 228

Query: 253 MVSDPNVLYQNEELDASICLDGKLLHTKHMKFLDKAAIVT-----EEDDIKSPNLWRLNT 307
              +  ++       ++      +     +  L  A ++          ++     + + 
Sbjct: 229 GKGNIGLVLALIGGVSAAYALVNIPTLGIVAGLCCAMVLVMGFVGAGASLQLERARKSHP 288

Query: 308 VHRVEELKSVIRMGPIWASGILLITAYAQQGTFSLQQAKSMDRHLTKSFQIPAGSMSVFT 367
              V+ ++SV+R+  ++A      + + Q+ +  + QA  M +            M    
Sbjct: 289 DAAVDGVRSVLRILVLFALVTPFWSLFDQKASTWILQANDMVKP----QWFEPAMMQALN 344

Query: 368 MVSMLSTIALYDRIIIPVARKFTGLDRGITFLHRMGIGFVISVLATLVAGFVEMKRKQAA 427
            + ++  I   + ++ P   +       +T L +MG G  I+ L+ +V G +++     +
Sbjct: 345 PLLVMLLIPFNNFVLYPAIERMG---VKLTALRKMGAGIAITGLSWIVVGTIQLMMDGGS 401

Query: 428 LAHGLVDKPHIIIPISVLWLVPQYSLHGIAEAFMSVGHLEFLYDQAPESMRSTATALFWT 487
                         +S+ W +  Y+L    E  +S   LEF Y QAP++M+ T  + +  
Sbjct: 402 -------------ALSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTL 448

Query: 488 ANSIGNYVSTLLVTLVHKFSAGPNGSNWLPDNNLNKGKLEYFYWLITLLQVVNVIYYFFC 547
           + ++GN    L    V      P  +  +    ++    + F++      ++  I +   
Sbjct: 449 SVTVGNLWVLLANVSV----KSPTVTEQIVQTGMSVTAFQMFFFAG--FAILAAIVFALY 502

Query: 548 AKIYTFKPIQMHQKGGDSSSSE 569
           A+ Y  +       G ++   +
Sbjct: 503 ARSYQMQDHYRQATGSENLYFQ 524

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} Length = 491

 Score =  102 bits (255), Expect = 3e-23
 Identities = 83/493 (16%), Positives = 173/493 (35%), Gaps = 68/493 (13%)

Query: 22  IFANEVCEKLAVVGFHANMISYLTTQ-----LHMPLTKAANTLTNFGGTGSLTPLIGAFV 76
           +F  E+ E+ +  G  A ++ Y+        LH+    AA+ +  +     L+  IG FV
Sbjct: 18  LFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFV 77

Query: 77  ADTYAGRFWTITVASIIYQIGMFSLTLSAILPQLRPPPCQGDQVCKEADTGQLAILYASL 136
           AD   G    +    ++  +G   L L                          + L+ S+
Sbjct: 78  ADRIIGARPAVFWGGVLIMLGHIVLALP----------------------FGASALFGSI 115

Query: 137 LLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAVLVAVTVLVYIQD 196
           +L  +G+G ++P V       +DE D ++       F+ + F +     +A  ++   Q+
Sbjct: 116 ILIIIGTGFLKPNVSTLVGTLYDEHDRRRDA----GFSIFVFGINLGAFIAPLIVGAAQE 171

Query: 197 NVGWNWGLGIPTVAMFLSIIAFVFGYPLYRNLNPAGSPFVRLMQVCVAAFRKRNLDMVSD 256
             G++    +  + MF+ ++ + FG     + +          +       K +L +   
Sbjct: 172 AAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVKVSLAVAG- 230

Query: 257 PNVLYQNEELDASICLDGKLLHTKHMKFLDKAAIVTEEDDIKSPNLWRLNTVHRVEELKS 316
                      A I +   +       +++   IV     +        +      E   
Sbjct: 231 ---------FIAIIVVMNLVGWNSLPAYINLLTIVAIAIPVFYFAWMISSVKVTSTEHLR 281

Query: 317 VIRMGPIWASGILLITAYAQQGT-FSLQQAKSMDRHLTKSFQIPAGSMSVFTMVSMLSTI 375
           V+   P++ + +L      Q     +   A+ +D         P    S F  ++ L  +
Sbjct: 282 VVSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSW-----FPV---SWFQSLNPLFIM 333

Query: 376 ALYDRIIIPVARKFTGL-DRGITFLHRMGIGFVISVLATLVAGFVEMKRKQAALAHGLVD 434
                     A  +T       +   +  +G + + L+ L+               G V 
Sbjct: 334 LY----TPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGA----LYGTSGKV- 384

Query: 435 KPHIIIPISVLWLVPQYSLHGIAEAFMSVGHLEFLYDQAPESMRSTATALFWTANSIGNY 494
                   S LWLV  ++L  + E  +S   L      AP++  S   ++++ ++S+G+ 
Sbjct: 385 --------SPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSA 436

Query: 495 VSTLLVTLVHKFS 507
           ++  LVTL +  S
Sbjct: 437 LNAQLVTLYNAKS 449

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	577
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.98
2xut_A	524	Proton/peptide symporter family protein; transport	99.97
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.96
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.95
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.95
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.9
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.87
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.37
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.3
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.25
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.13
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	98.98
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	98.76
2xut_A	524	Proton/peptide symporter family protein; transport	98.18

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.98  E-value=9.7e-31  Score=282.75  Aligned_cols=446  Identities=17%  Similarity=0.244  Sum_probs=290.2

Q ss_pred             ccCCCcceehHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCCChHHHHHHHHHHhHhhhhchhhhhhhhhh-ccchh
Q 008096           11 RKKGGIITMPFIFANEVCEKLAVVGFHANMISYLTTQ-----LHMPLTKAANTLTNFGGTGSLTPLIGAFVADT-YAGRF   84 (577)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-----lg~s~~~~~~i~~~~~~~~~~~~~~~G~laDr-~~Grk   84 (577)
                      ..+++++..+.+....++..+.+|++.++++.|++++     +|+|..+.+++.+.+.++..++++++|+++|| + |||
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~-g~r   85 (491)
T 4aps_A            7 TFFGQPLGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRII-GAR   85 (491)
T ss_dssp             ----CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-CHH
T ss_pred             hhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cch
Confidence            4456778888888899999999999999999999998     99999999999999999999999999999999 8 999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCcccccccchhHHHHHHHHHHHhccCCcccchhhhhhccCCCCCch
Q 008096           85 WTITVASIIYQIGMFSLTLSAILPQLRPPPCQGDQVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPK  164 (577)
Q Consensus        85 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~  164 (577)
                      +++.++.++..++.++++++.                      +.+.++++|+++|++.+...|+..++++|++|+++. 
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~-  142 (491)
T 4aps_A           86 PAVFWGGVLIMLGHIVLALPF----------------------GASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDR-  142 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHSCC----------------------STTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTT-
T ss_pred             HHHHHHHHHHHHHHHHHHHhh----------------------hHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccc-
Confidence            999999999999999988765                      677799999999999999999999999999997652 


Q ss_pred             hhhhhhhhhhHHHHHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHHHHHHHHHcccccccc---CCCC-ChhhHHHH
Q 008096          165 QATKTWKYFNWYYFVMGAAVLVAVTVLVYIQDNVGWNWGLGIPTVAMFLSIIAFVFGYPLYRNL---NPAG-SPFVRLMQ  240 (577)
Q Consensus       165 ~~~~r~~~~~~~~~~~~ig~~lg~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~  240 (577)
                         +|+.++++++.+.++|..++|.+++++.+..||+++|++.++..+++.+.+....++...+   ++.. .+.++..+
T Consensus       143 ---~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (491)
T 4aps_A          143 ---RRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKP  219 (491)
T ss_dssp             ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHH
T ss_pred             ---cceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCcccccccccCCCCccccchhHH
Confidence               2677888899999999999999999999989999999998877766666555443332221   1111 11111111


Q ss_pred             HHH--------------HHHhhccccCCCCCcccccccchhhhhhcCCcccccccchhhhhhhhccccccCCCCCccccc
Q 008096          241 VCV--------------AAFRKRNLDMVSDPNVLYQNEELDASICLDGKLLHTKHMKFLDKAAIVTEEDDIKSPNLWRLN  306 (577)
Q Consensus       241 ~~~--------------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  306 (577)
                      ...              ......+.+. +++.....                  .............        .|+..
T Consensus       220 ~~~~~g~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~------------------~~~~~~~~~~~~~--------~~~~~  272 (491)
T 4aps_A          220 LLVKVSLAVAGFIAIIVVMNLVGWNSL-PAYINLLT------------------IVAIAIPVFYFAW--------MISSV  272 (491)
T ss_dssp             HHHHCCCCCHHHHHHHHHHHHHSSCCT-THHHHHHH------------------HHHHHHHHHHHHH--------HC---
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccCccc-ccchhhhh------------------HHHHHHHHHHHHH--------Hhhcc
Confidence            000              0000000000 00000000                  0000000000000        00000


Q ss_pred             chhhhhhhhhhhhhhhHHHHHHHHHHHhhccceeEEeeccccccccccccc-cccchhhhhhHHHHHHHHHhhhhhhhhc
Q 008096          307 TVHRVEELKSVIRMGPIWASGILLITAYAQQGTFSLQQAKSMDRHLTKSFQ-IPAGSMSVFTMVSMLSTIALYDRIIIPV  385 (577)
Q Consensus       307 ~~~~~~~~k~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  385 (577)
                      . ....++++......++.....++..+.+.......+   .....  +.+ ...+.+.....+..++..++.++    +
T Consensus       273 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~----l  342 (491)
T 4aps_A          273 K-VTSTEHLRVVSYIPLFIAAVLFWAIEEQGSVVLATF---AAERV--DSSWFPVSWFQSLNPLFIMLYTPFFAW----L  342 (491)
T ss_dssp             ----------CTTHHHHHHHHHHHHHHHGGGGTHHHHH---HHHSC--CCSSSCSGGGTTHHHHHHHHHHHHHHH----H
T ss_pred             c-ccHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHH---HHHHh--ccCccCHHHHhccchHHHHHHHHHHHH----H
Confidence            0 001223333334444444455555544433221111   11111  111 34566677777777777887666    4


Q ss_pred             cccccCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccccchhhHHHHHHHHHHHHHHHHhhhh
Q 008096          386 ARKFTGLDRGITFLHRMGIGFVISVLATLVAGFVEMKRKQAALAHGLVDKPHIIIPISVLWLVPQYSLHGIAEAFMSVGH  465 (577)
Q Consensus       386 ~~r~~~~~~~~~~~~~~~ig~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~gi~~~~~~~~~  465 (577)
                      .||+++|+.  .....+.+|.++.++++++......    .   .+      .....+++++++..++.+++.+...+..
T Consensus       343 ~~r~~~r~~--~~~~~~~~~~~~~~~~~~~~~~~~~----~---~~------~~~~~~~~~~~~~~~l~g~~~~~~~~~~  407 (491)
T 4aps_A          343 WTAWKKNQP--SSPTKFAVGLMFAGLSFLLMAIPGA----L---YG------TSGKVSPLWLVGSWALVILGEMLISPVG  407 (491)
T ss_dssp             HHHTTTC-----CHHHHHHHHHHHHHHHTTTHHHHH----H---CC------CCTTCCTHHHHHHHHHHHHHHHTTTTHH
T ss_pred             HHHHhccCC--CchHHHHHHHHHHHHHHHHHHHHHH----h---cC------CCCCccHHHHHHHHHHHHHHHHHHhHHH
Confidence            555555443  4455567888888887766655430    0   00      0112356667778888999999999999


Q ss_pred             hhhhhcccCcccHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHh
Q 008096          466 LEFLYDQAPESMRSTATALFWTANSIGNYVSTLLVTLVHKFSAGPNGSNWLPDNNLNKGKLEYFYWLITLLQVVNVIYYF  545 (577)
Q Consensus       466 ~~~v~~~~P~~~rg~~~gi~~~~~~lg~~l~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  545 (577)
                      +.++.|..|++.||+++|+.++.+.+|..+++.+.+.+.+.                  ++.+.|..++++.+++.++.+
T Consensus       408 ~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~  469 (491)
T 4aps_A          408 LSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAK------------------SEVAYFSYFGLGSVVLGIVLV  469 (491)
T ss_dssp             HHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGS------------------STTHHHHHTHHHHHHHHHHHH
T ss_pred             HHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc------------------cHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999997765431                  224457777777777777777


Q ss_pred             hhhhcccc
Q 008096          546 FCAKIYTF  553 (577)
Q Consensus       546 ~~~~~~~~  553 (577)
                      ++.++.++
T Consensus       470 ~~~~~~~~  477 (491)
T 4aps_A          470 FLSKRIQG  477 (491)
T ss_dssp             HC------
T ss_pred             HHHHHHHH
Confidence            66655433

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=99.97  E-value=7.8e-31  Score=285.99  Aligned_cols=484  Identities=22%  Similarity=0.350  Sum_probs=283.6

Q ss_pred             CCCcceehHHHHHHHHHHHHHHHHHHHHHHHHHHhcC------CChHHHHHHHHHHhHhhhhchhhhhhhhhhccchhHH
Q 008096           13 KGGIITMPFIFANEVCEKLAVVGFHANMISYLTTQLH------MPLTKAANTLTNFGGTGSLTPLIGAFVADTYAGRFWT   86 (577)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~lg------~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grk~~   86 (577)
                      +.+++.++.+.+..++..+.+|++.++++.|+++++|      +|..+.+++.+.+.++..++++++|+++||++|||++
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~   87 (524)
T 2xut_A            8 PKWPRQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNT   87 (524)
T ss_dssp             -----CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHH
T ss_pred             ccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHH
Confidence            4566788888999999999999999999999999999      9999999999999999999999999999995599999


Q ss_pred             HHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCcccccccchhHHHHHHHHHHHhccCCcccchhhhhhccCCCCCchhh
Q 008096           87 ITVASIIYQIGMFSLTLSAILPQLRPPPCQGDQVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQA  166 (577)
Q Consensus        87 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~  166 (577)
                      +.++.++..++.++++++.                     .+.+.+++.|++.|++.+...|+..++++|++|+++    
T Consensus        88 ~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~----  142 (524)
T 2xut_A           88 ILWLSLIYCVGHAFLAIFE---------------------HSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSN----  142 (524)
T ss_dssp             HHHHHHHHHHHHHHHHHTS---------------------SCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTT----
T ss_pred             HHHHHHHHHHHHHHHHHhc---------------------ccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccc----
Confidence            9999999999988888753                     146778999999999999999999999999999887    


Q ss_pred             hhhhh---hhhHHHHHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHHHHHHHHHccccccccCCCCChhhHHHHHHH
Q 008096          167 TKTWK---YFNWYYFVMGAAVLVAVTVLVYIQDNVGWNWGLGIPTVAMFLSIIAFVFGYPLYRNLNPAGSPFVRLMQVCV  243 (577)
Q Consensus       167 ~~r~~---~~~~~~~~~~ig~~lg~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (577)
                        |++   .+++++.+.++|..++|.+++++.+..||++.|++.++..+++.+.+....++.+..+++.++..+..+.+.
T Consensus       143 --r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (524)
T 2xut_A          143 --KSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPPEPKDPHGFLPVIR  220 (524)
T ss_dssp             --TTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHHSSSSSCCCCC--------------
T ss_pred             --hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCccchhHHHHHH
Confidence              654   455599999999999999999998888999999998887776666555444433322222221111111111


Q ss_pred             HHHhhccccCCCCCcccccccchhhhhhcCCcccccccchhhhhhh----hccccccCCCCCccc-------ccchhhhh
Q 008096          244 AAFRKRNLDMVSDPNVLYQNEELDASICLDGKLLHTKHMKFLDKAA----IVTEEDDIKSPNLWR-------LNTVHRVE  312 (577)
Q Consensus       244 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~~~~~~~~-------~~~~~~~~  312 (577)
                      ...++++.+. +................   ...+.+....+....    ...+   .....+|+       .......+
T Consensus       221 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~  293 (524)
T 2xut_A          221 SALLTKVEGK-GNIGLVLALIGGVSAAY---ALVNIPTLGIVAGLCCAMVLVMG---FVGAGASLQLERARKSHPDAAVD  293 (524)
T ss_dssp             ------CTTH-HHHHHHHHHHHHHHHHH---TGGGTTTTCSSHHHHHHHHHHHH---HHHTGGGTHHHHSCCSCCSSSST
T ss_pred             HHHhhhhccc-Cccchhhhhhhhhhhhh---hhcccchhhhhhhhhhhhhhhhc---ccccchhhHHhhhhccccHhHHH
Confidence            1111111000 00000000000000000   000000000000000    0000   00011220       00011122


Q ss_pred             hhhhhhhhhhHHHHHHHHHHHhhccceeEEeeccccccccccccccccchhhhhhHHHHHHHHHhhhhhhhhccccccCC
Q 008096          313 ELKSVIRMGPIWASGILLITAYAQQGTFSLQQAKSMDRHLTKSFQIPAGSMSVFTMVSMLSTIALYDRIIIPVARKFTGL  392 (577)
Q Consensus       313 ~~k~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  392 (577)
                      ++|+......++.....++..+.+..+.+..+....+...   + ...+.+...+.+..++..++.+++..+..+|++++
T Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  369 (524)
T 2xut_A          294 GVRSVLRILVLFALVTPFWSLFDQKASTWILQANDMVKPQ---W-FEPAMMQALNPLLVMLLIPFNNFVLYPAIERMGVK  369 (524)
T ss_dssp             TTTTHHHHHHHHTTSHHHHTTTSSTTTHHHHHHHHSCCCS---S-SCHHHHHTTSGGGHHHHGGGTTTC-----------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccchhhHHhHHhcCCCe---e-ecHHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCC
Confidence            3344444444444444444444444333222221111110   0 13556666777777888888777655555655433


Q ss_pred             CCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccccchhhHHHHHHHHHHHHHHHHhhhhhhhhhcc
Q 008096          393 DRGITFLHRMGIGFVISVLATLVAGFVEMKRKQAALAHGLVDKPHIIIPISVLWLVPQYSLHGIAEAFMSVGHLEFLYDQ  472 (577)
Q Consensus       393 ~~~~~~~~~~~ig~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~gi~~~~~~~~~~~~v~~~  472 (577)
                      .   ++.+++.+|+++.++++++.......      .       +.....+.+++++.+++.+++++...+..+.++.+.
T Consensus       370 ~---~~~~~~~~g~~~~~~~~~~~~~~~~~------~-------~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~  433 (524)
T 2xut_A          370 L---TALRKMGAGIAITGLSWIVVGTIQLM------M-------DGGSALSIFWQILPYALLTFGEVLVSATGLEFAYSQ  433 (524)
T ss_dssp             ----CCHHHHHTHHHHHHHHHHTTTTTTTT------T-------TTTCCCCSHHHHHHHHHHHHHHHHHHHHHTTTHHHH
T ss_pred             C---ChHHHHHHHHHHHHHHHHHHHHHHHH------h-------cCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            2   44555777877777776655443200      0       000123556667788999999999999999999999


Q ss_pred             cCcccHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhhhhhccc
Q 008096          473 APESMRSTATALFWTANSIGNYVSTLLVTLVHKFSAGPNGSNWLPDNNLNKGKLEYFYWLITLLQVVNVIYYFFCAKIYT  552 (577)
Q Consensus       473 ~P~~~rg~~~gi~~~~~~lg~~l~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  552 (577)
                      +|++.||+++|+.++...+|+.+++.+.+.+.+..+    .+|..+  .+.+.....|++.+++.++++++++++.++++
T Consensus       434 ~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~----~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  507 (524)
T 2xut_A          434 APKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSPTV----TEQIVQ--TGMSVTAFQMFFFAGFAILAAIVFALYARSYQ  507 (524)
T ss_dssp             CCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSCHH----HHHHHH--HHSCHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred             CcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccc----cccccc--ccccccccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            999999999999999999999999999988644210    012110  00011123367777777887777777766655


Q ss_pred             cccc
Q 008096          553 FKPI  556 (577)
Q Consensus       553 ~~~~  556 (577)
                      +++.
T Consensus       508 ~~~~  511 (524)
T 2xut_A          508 MQDH  511 (524)
T ss_dssp             ----
T ss_pred             cchh
Confidence            5443

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.96  E-value=3.1e-27  Score=251.72  Aligned_cols=399  Identities=11%  Similarity=0.006  Sum_probs=256.0

Q ss_pred             CcceehHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhHhhhhchhhhhhhhhhccchhHHHHHHHHHH
Q 008096           15 GIITMPFIFANEVCEKLAVVGFHANMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADTYAGRFWTITVASIIY   94 (577)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~lg~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~   94 (577)
                      +|+.+..+....+...+..+.+.+.+|.+. +++ .|..+.+++.+.+.++..+++++.|+++||+ |||+++.++.++.
T Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-g~r~~l~~~~~~~  102 (451)
T 1pw4_A           26 RWQIFLGIFFGYAAYYLVRKNFALAMPYLV-EQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILA  102 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTSHHHHHHHTT-SST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhc-CchHHHHHHHHHH
Confidence            355555555566666666666666666555 567 9999999999999999999999999999998 9999999999999


Q ss_pred             HHHHHHHHH----hhhcCCCCCCCCCCCCcccccccchhHHHHHHHHHHHhccCCcccchhhhhhccCCCCCchhhhhhh
Q 008096           95 QIGMFSLTL----SAILPQLRPPPCQGDQVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTW  170 (577)
Q Consensus        95 ~i~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~  170 (577)
                      .++.+++++    +.                      +++.++++|+++|++.+...+...++++|++|+++      |+
T Consensus       103 ~~~~~~~~~~~~~~~----------------------~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~------r~  154 (451)
T 1pw4_A          103 AAVMLFMGFVPWATS----------------------SIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKE------RG  154 (451)
T ss_dssp             HHHHHHHHHCHHHHS----------------------SSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTH------HH
T ss_pred             HHHHHHHHhhhhccc----------------------cHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchh------hh
Confidence            999999998    65                      56779999999999999999999999999999877      99


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHhhccccc-chhhhHHHHHHHHHHHHHHHHccccccccCCCCChhhHHHHHHHHHHhhc
Q 008096          171 KYFNWYYFVMGAAVLVAVTVLVYIQDNVG-WNWGLGIPTVAMFLSIIAFVFGYPLYRNLNPAGSPFVRLMQVCVAAFRKR  249 (577)
Q Consensus       171 ~~~~~~~~~~~ig~~lg~~i~~~l~~~~g-w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (577)
                      +++++.+.+.++|.+++|.+++++.+..| ||+.|++.++..++..++..+..++.+......+ ..+            
T Consensus       155 ~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~------------  221 (451)
T 1pw4_A          155 GIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPP-IEE------------  221 (451)
T ss_dssp             HHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCS-CTT------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCC-hhh------------
Confidence            99999999999999999999999888888 9999999888776655554444433211110000 000            


Q ss_pred             cccCCCCCcccccccchhhhhhcCCcccccccchhhhhhhhccccccCCCCCcccccchhhhhhhhhhhhh-hhHHHHHH
Q 008096          250 NLDMVSDPNVLYQNEELDASICLDGKLLHTKHMKFLDKAAIVTEEDDIKSPNLWRLNTVHRVEELKSVIRM-GPIWASGI  328 (577)
Q Consensus       250 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~-~~l~~~~~  328 (577)
                         . +.+   .+.+.       ..                     +.+....++....+.....+.+... +..++...
T Consensus       222 ---~-~~~---~~~~~-------~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (451)
T 1pw4_A          222 ---Y-KND---YPDDY-------NE---------------------KAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYL  266 (451)
T ss_dssp             ---T-CCC--------------------------------------------CCTHHHHHHTSSCHHHHHHHHHHHHHHH
T ss_pred             ---h-ccc---ccccc-------hh---------------------hhhcccccccchHHHHHcCHHHHHHHHHHHHHHH
Confidence               0 000   00000       00                     0000000000000001111222111 11111122


Q ss_pred             HHHHHhhccceeEEeeccccccccccccc-cccchhhhhhHHHHHHHHHhhhhhhhhccccc--cCCCCCCCchhHHHHH
Q 008096          329 LLITAYAQQGTFSLQQAKSMDRHLTKSFQ-IPAGSMSVFTMVSMLSTIALYDRIIIPVARKF--TGLDRGITFLHRMGIG  405 (577)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~--~~~~~~~~~~~~~~ig  405 (577)
                      .........+.+       .....  +.+ ...+.+.....+..+++.++.++    +.||+  ++|+       .+.++
T Consensus       267 ~~~~~~~~~~~~-------~~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~g~----l~~~~~~~~~~-------~~~~~  326 (451)
T 1pw4_A          267 LRYGILDWSPTY-------LKEVK--HFALDKSSWAYFLYEYAGIPGTLLCGW----MSDKVFRGNRG-------ATGVF  326 (451)
T ss_dssp             HHHHHHHHHHHH-------BTTBS--CCCHHHHHHHHHHHHHHHHHHHHHHHH----HHHHTSTTCHH-------HHHHH
T ss_pred             HHHHHHHHHHHH-------HHHhc--CCCHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhcCCch-------hHHHH
Confidence            222221111111       11112  111 11334445555555666666555    55554  3222       14444


Q ss_pred             HHHHH-HHHHHHHHHHHHHHHHHHhcCCCCCCCccccchhhHHHHHHHHHHHHHHHHhhhhhhhhhcccCcccHHHHHHH
Q 008096          406 FVISV-LATLVAGFVEMKRKQAALAHGLVDKPHIIIPISVLWLVPQYSLHGIAEAFMSVGHLEFLYDQAPESMRSTATAL  484 (577)
Q Consensus       406 ~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~gi~~~~~~~~~~~~v~~~~P~~~rg~~~gi  484 (577)
                      ..+.. ++++++....                    ..+.+......++.+++.....+..+.++.+..|++.||++.|+
T Consensus       327 ~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  386 (451)
T 1pw4_A          327 FMTLVTIATIVYWMNP--------------------AGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGF  386 (451)
T ss_dssp             HHHHHHHHHHHTTSCC--------------------TTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhc--------------------ccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHH
Confidence            44443 4444333221                    12444555666778888888888888999999999999999999


Q ss_pred             HHHHHhH-HHHHHHHHHHHHhhhcCCCCCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhhhhh
Q 008096          485 FWTANSI-GNYVSTLLVTLVHKFSAGPNGSNWLPDNNLNKGKLEYFYWLITLLQVVNVIYYFFCAK  549 (577)
Q Consensus       485 ~~~~~~l-g~~l~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  549 (577)
                      .+....+ |..+++.+.+.+.+..                 ++...|++.+++.+++.++.++..+
T Consensus       387 ~~~~~~~~g~~~~~~~~g~l~~~~-----------------g~~~~~~~~~~~~~~~~~~~~~~~~  435 (451)
T 1pw4_A          387 TGLFGYLGGSVAASAIVGYTVDFF-----------------GWDGGFMVMIGGSILAVILLIVVMI  435 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHSS-----------------CSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhc-----------------CcHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999 9999999999987643                 1245577777777777766666544

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.95  E-value=3.7e-28  Score=262.29  Aligned_cols=418  Identities=12%  Similarity=0.074  Sum_probs=237.0

Q ss_pred             ChHHHHHHHHHHhHhhhhchhhhhhhhhhccchhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCcccccccchhH
Q 008096           51 PLTKAANTLTNFGGTGSLTPLIGAFVADTYAGRFWTITVASIIYQIGMFSLTLSAILPQLRPPPCQGDQVCKEADTGQLA  130 (577)
Q Consensus        51 s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (577)
                      +..+.+++.+++.++..+++++.|+++||+ |||+++.++.+++.++.++++++........+    ...-...-..+++
T Consensus        53 ~~~~~g~~~s~~~~G~~iG~~~~G~laDr~-GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~----~~~~~~~~a~~~~  127 (491)
T 4gc0_A           53 ANSLLGFCVASALIGCIIGGALGGYCSNRF-GRRDSLKIAAVLFFISGVGSAWPELGFTSINP----DNTVPVYLAGYVP  127 (491)
T ss_dssp             HHHHHHHHHHTHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSS----SSSCCGGGGGCHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcc----hhHHHHHHhhhHH
Confidence            446678999999999999999999999999 99999999999999999999964311110000    0000001134788


Q ss_pred             HHHHHHHHHHhccCCcccchhhhhhccCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhccc--------ccchh
Q 008096          131 ILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAVLVAVTVLVYIQDN--------VGWNW  202 (577)
Q Consensus       131 ~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~lg~~i~~~l~~~--------~gw~~  202 (577)
                      .++++|+++|+|.|+..+..+++++|..|+++      |++..++++.+..+|.++++.++..+...        .+|++
T Consensus       128 ~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~------rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (491)
T 4gc0_A          128 EFVIYRIIGGIGVGLASMLSPMYIAELAPAHI------RGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRY  201 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGG------HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHh------hhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHH
Confidence            99999999999999999999999999999887      99999999999999999998887665432        34776


Q ss_pred             hhHHHHHHHHHHHHHHHHccccccccCCCCChhhHHHHHHHHHHhhccccCCCCCcccccccchhhhhhcCCcccccccc
Q 008096          203 GLGIPTVAMFLSIIAFVFGYPLYRNLNPAGSPFVRLMQVCVAAFRKRNLDMVSDPNVLYQNEELDASICLDGKLLHTKHM  282 (577)
Q Consensus       203 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  282 (577)
                      .+.+..+..++.++....                                .||+|+++..+++.+++....++....+..
T Consensus       202 ~~~~~~~~~~~~~~~~~~--------------------------------~peSp~~L~~~~~~~~a~~~l~~~~~~~~~  249 (491)
T 4gc0_A          202 MFASECIPALLFLMLLYT--------------------------------VPESPRWLMSRGKQEQAEGILRKIMGNTLA  249 (491)
T ss_dssp             HHHTTHHHHHHHHHHGGG--------------------------------SCCCHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             Hhhhhhhhhhhhhhhhhc--------------------------------CCCChHHHHHcCchhHHHHhHHHhcCCchh
Confidence            666555554443333222                                222333333322222222221111100000


Q ss_pred             h--hhh-hhhhccccccCCCCCcccccchhhhhhhhhhhhh-hhHHHHHH-HHHHHhhccceeEEeeccccccccccccc
Q 008096          283 K--FLD-KAAIVTEEDDIKSPNLWRLNTVHRVEELKSVIRM-GPIWASGI-LLITAYAQQGTFSLQQAKSMDRHLTKSFQ  357 (577)
Q Consensus       283 ~--~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~-~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  357 (577)
                      +  ..+ ......++   +...      ......++..... ...+.... .........       . ......+ ...
T Consensus       250 ~~~~~~~~~~~~~~~---~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~-~~~~~~~-~~~  311 (491)
T 4gc0_A          250 TQAVQEIKHSLDHGR---KTGG------RLLMFGVGVIVIGVMLSIFQQFVGINVVLYYA-------P-EVFKTLG-AST  311 (491)
T ss_dssp             HHHHHHHHHHHHHHH---HHTT------HHHHSCCTHHHHHHHHHHHHHHTCHHHHHHHH-------H-HHHHHSS-CCH
T ss_pred             HHHHHHHHHHHHhhh---hhhh------HHHHhcccHHHHHHHHHHHHHHhhhhHHHhcc-------h-HHHHhcC-CCc
Confidence            0  000 00000000   0000      0000011111111 11000000 000000000       0 0000010 000


Q ss_pred             cccchhhhhhHHHHHHHHHhhhhhhhhccccccCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCC
Q 008096          358 IPAGSMSVFTMVSMLSTIALYDRIIIPVARKFTGLDRGITFLHRMGIGFVISVLATLVAGFVEMKRKQAALAHGLVDKPH  437 (577)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ig~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  437 (577)
                      ...........+..++...+..+    +.||+++|+.       +..+.....++++.++....        .       
T Consensus       312 ~~~~~~~~~~~~~~~~~~~~~~~----l~dr~Grr~~-------~~~~~~~~~~~~~~l~~~~~--------~-------  365 (491)
T 4gc0_A          312 DIALLQTIIVGVINLTFTVLAIM----TVDKFGRKPL-------QIIGALGMAIGMFSLGTAFY--------T-------  365 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH----HHHHHCSHHH-------HHHHHHHHHHHHHHHHHHHH--------T-------
T ss_pred             cchhhHHHHHHHHHHHHHHHHHH----HHHhhcCcch-------hccchHHHHHHHHHHHHHHh--------c-------
Confidence            11112222333333444444333    5566655433       66677767666665554330        0       


Q ss_pred             ccccchhhHHHHHHHHHHHHHHHHhhhhhhhhhcccCcccHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCCCCCCCCC
Q 008096          438 IIIPISVLWLVPQYSLHGIAEAFMSVGHLEFLYDQAPESMRSTATALFWTANSIGNYVSTLLVTLVHKFSAGPNGSNWLP  517 (577)
Q Consensus       438 ~~~~~~~~~l~~~~~l~gi~~~~~~~~~~~~v~~~~P~~~rg~~~gi~~~~~~lg~~l~~~i~~~v~~~~~~~~~~~~~~  517 (577)
                        ...+...++...++.........+..+.+..|..|++.|++++|+.+..+++++++++.+.+.+.+....        
T Consensus       366 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~--------  435 (491)
T 4gc0_A          366 --QAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWL--------  435 (491)
T ss_dssp             --TCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHH--------
T ss_pred             --ccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------
Confidence              0112222333333333334455677889999999999999999999999999999999998876432100        


Q ss_pred             CCCCCcchhhHHHHHHHHHHHHHHHHHhhhhhccccccccccccCCCCCCc
Q 008096          518 DNNLNKGKLEYFYWLITLLQVVNVIYYFFCAKIYTFKPIQMHQKGGDSSSS  568 (577)
Q Consensus       518 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  568 (577)
                         ....+..+.|++++++++++.++.+++.||+|+++.||.++.-+.+.+
T Consensus       436 ---~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~tLeei~~~f~~~~~  483 (491)
T 4gc0_A          436 ---VAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEELEALWEPETK  483 (491)
T ss_dssp             ---HHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTCCHHHHGGGTC----
T ss_pred             ---HhhhhhhHHHHHHHHHHHHHHHHHHheecCCCCCCHHHHHHHhCCCCc
Confidence               001122345788889999999999999999999999998766544433

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.95  E-value=1.1e-25  Score=239.07  Aligned_cols=357  Identities=11%  Similarity=0.029  Sum_probs=234.7

Q ss_pred             cCCCcceehHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhHhhhhchhhhhhhhhhccchhHHHHHHH
Q 008096           12 KKGGIITMPFIFANEVCEKLAVVGFHANMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADTYAGRFWTITVAS   91 (577)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~lg~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~   91 (577)
                      .+.+++.+..+....++..+......+.+| ++++++|+|..+.+++.+.+.++..++.++.|+++||+ |||+++.++.
T Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~-g~r~~l~~~~   98 (438)
T 3o7q_A           21 SRSYIIPFALLCSLFFLWAVANNLNDILLP-QFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKL-SYKAGIITGL   98 (438)
T ss_dssp             -CTTHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHS-CHHHHHHHHH
T ss_pred             hhHhHHHHHHHHHHHHHHHHHHHhHHHHHH-HHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-cchHHHHHHH
Confidence            345566666655566666666665555555 47789999999999999999999999999999999998 9999999999


Q ss_pred             HHHHHHHHHH---HHhhhcCCCCCCCCCCCCcccccccchhHHHHHHHHHHHhccCCcccchhhhhhccCCCCCchhhhh
Q 008096           92 IIYQIGMFSL---TLSAILPQLRPPPCQGDQVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATK  168 (577)
Q Consensus        92 ~~~~i~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~  168 (577)
                      ++..++.+++   +++.                      +++.++++|++.|++.+...+...++++|++|+++      
T Consensus        99 ~~~~~~~~~~~~~~~~~----------------------~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------  150 (438)
T 3o7q_A           99 FLYALGAALFWPAAEIM----------------------NYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESS------  150 (438)
T ss_dssp             HHHHHHHHHHHHHHHTT----------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTT------
T ss_pred             HHHHHHHHHHHhccccc----------------------cHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchh------
Confidence            9999999998   5544                      78889999999999999999999999999999988      


Q ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHhhc-cccc-------------------------chhhhHHHHHHHHHHHHHHHHcc
Q 008096          169 TWKYFNWYYFVMGAAVLVAVTVLVYIQ-DNVG-------------------------WNWGLGIPTVAMFLSIIAFVFGY  222 (577)
Q Consensus       169 r~~~~~~~~~~~~ig~~lg~~i~~~l~-~~~g-------------------------w~~~f~~~~~~~~~~~~~~~~~~  222 (577)
                      |++++++++.+.++|..++|.+++++. +..+                         |++.|++.++..++..+++.+.+
T Consensus       151 r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~  230 (438)
T 3o7q_A          151 GHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTK  230 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHc
Confidence            999999999999999999999999987 5544                         99999777665554444433321


Q ss_pred             -ccccccCCCCChhhHHHHHHHHHHhhccccCCCCCcccccccchhhhhhcCCcccccccchhhhhhhhccccccCCCCC
Q 008096          223 -PLYRNLNPAGSPFVRLMQVCVAAFRKRNLDMVSDPNVLYQNEELDASICLDGKLLHTKHMKFLDKAAIVTEEDDIKSPN  301 (577)
Q Consensus       223 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  301 (577)
                       |+.+.+++++++.+                                           +                  ...
T Consensus       231 ~p~~~~~~~~~~~~~-------------------------------------------~------------------~~~  249 (438)
T 3o7q_A          231 FPALQSDNHSDAKQG-------------------------------------------S------------------FSA  249 (438)
T ss_dssp             CCCCTTTCCCCSSTT-------------------------------------------S------------------HHH
T ss_pred             CCccccccccccccc-------------------------------------------c------------------hhh
Confidence             11110000000000                                           0                  000


Q ss_pred             cccccchhhhhhhhhhhh-hhhHHHHHHHHHHHhhccceeEEeeccccccccccccccccchhhhhhHHHHHHHHHhhhh
Q 008096          302 LWRLNTVHRVEELKSVIR-MGPIWASGILLITAYAQQGTFSLQQAKSMDRHLTKSFQIPAGSMSVFTMVSMLSTIALYDR  380 (577)
Q Consensus       302 ~~~~~~~~~~~~~k~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  380 (577)
                      ++     +...+.+.+.. ....++............+.+.      .+...+ ......+.......+..+++.++.++
T Consensus       250 ~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~g~  317 (438)
T 3o7q_A          250 SL-----SRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYA------VEEIPG-MTAGFAANYLTGTMVCFFIGRFTGTW  317 (438)
T ss_dssp             HH-----HHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHSTT-CCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hH-----HHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHh------hhccCC-cchhHHHHHHHHHHHHHHHHHHHHHH
Confidence            00     00001111111 1111111111111111111110      111111 00112334444455555666666555


Q ss_pred             hhhhccccccCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccccchhhHHHHHHHHHHHHHHH
Q 008096          381 IIIPVARKFTGLDRGITFLHRMGIGFVISVLATLVAGFVEMKRKQAALAHGLVDKPHIIIPISVLWLVPQYSLHGIAEAF  460 (577)
Q Consensus       381 ~~~~~~~r~~~~~~~~~~~~~~~ig~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~gi~~~~  460 (577)
                          +.||+++|+       .+.++.++.++++++.....                      +.+ .+...++.+++.+.
T Consensus       318 ----l~~r~~~~~-------~~~~~~~~~~~~~~~~~~~~----------------------~~~-~~~~~~~~g~~~~~  363 (438)
T 3o7q_A          318 ----LISRFAPHK-------VLAAYALIAMALCLISAFAG----------------------GHV-GLIALTLCSAFMSI  363 (438)
T ss_dssp             ----HHHHSCHHH-------HHHHHHHHHHHHHHHHHHCC----------------------HHH-HHHHHHHHHHHHTT
T ss_pred             ----HHHHhcchH-------HHHHHHHHHHHHHHHHHHcC----------------------CcH-HHHHHHHHHHHHHH
Confidence                455543322       26666666666665554432                      222 23345777888888


Q ss_pred             HhhhhhhhhhcccCcccHHHHHHHHHHHHhHHHHHHHHHHHHHhhhc
Q 008096          461 MSVGHLEFLYDQAPESMRSTATALFWTANSIGNYVSTLLVTLVHKFS  507 (577)
Q Consensus       461 ~~~~~~~~v~~~~P~~~rg~~~gi~~~~~~lg~~l~~~i~~~v~~~~  507 (577)
                      ..+..+.+..+..|++ ++++.++.. .+.+|+.++|.+.+.+.+..
T Consensus       364 ~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~  408 (438)
T 3o7q_A          364 QYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAA  408 (438)
T ss_dssp             HHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHh
Confidence            8999999999999987 999999887 67799999999999988765

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.90  E-value=7.7e-24  Score=220.43  Aligned_cols=166  Identities=13%  Similarity=0.096  Sum_probs=146.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhHhhhhchhhhhhhhhhccchhHHHHHHHHHHHHHHHH
Q 008096           21 FIFANEVCEKLAVVGFHANMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADTYAGRFWTITVASIIYQIGMFS  100 (577)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~l~~~l~~~lg~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~i~~~~  100 (577)
                      .+....++..+......+.+|.+ .+++|.|..+.+++.+.+.++..+++++.|+++||+ |||+.+..+.++..++.++
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~   81 (375)
T 2gfp_A            4 MLVLLVAVGQMAQTIYIPAIADM-ARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRV-GRRPVILVGMSIFMLATLV   81 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH-HTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTS-CCCCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhhhHHH-HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCchhHHHHHHHHHHHHHH
Confidence            33445666666666666777664 568999999999999999999999999999999998 9999999999999999999


Q ss_pred             HHHhhhcCCCCCCCCCCCCcccccccchhHHHHHHHHHHHhccCCcccchhhhhhccCCCCCchhhhhhhhhhhHHHHHH
Q 008096          101 LTLSAILPQLRPPPCQGDQVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVM  180 (577)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~  180 (577)
                      ++++.                      +.+.+++.|++.|++.+...+...+++.|.+|+++      |++++++++.+.
T Consensus        82 ~~~~~----------------------~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~  133 (375)
T 2gfp_A           82 AVTTS----------------------SLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQ------LRHANSLLNMGI  133 (375)
T ss_dssp             HHHHH----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS------CCSHHHHHHHHH
T ss_pred             HHHhc----------------------cHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHH------HHHHHHHHHHHH
Confidence            99876                      78889999999999999999999999999999888      999999999999


Q ss_pred             HHHHHHHHHHHHhhcccccchhhhHHHHHHHHHHHH
Q 008096          181 GAAVLVAVTVLVYIQDNVGWNWGLGIPTVAMFLSII  216 (577)
Q Consensus       181 ~ig~~lg~~i~~~l~~~~gw~~~f~~~~~~~~~~~~  216 (577)
                      .+|..++|.+++++.+..||++.|++.++..++..+
T Consensus       134 ~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  169 (375)
T 2gfp_A          134 LVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTF  169 (375)
T ss_dssp             HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence            999999999999999888999999887776554444

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.87  E-value=9.3e-23  Score=216.13  Aligned_cols=389  Identities=8%  Similarity=0.000  Sum_probs=219.3

Q ss_pred             eehHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhHhhhhchhhhhhhhhhccchhHHHHHHHHHHHHH
Q 008096           18 TMPFIFANEVCEKLAVVGFHANMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADTYAGRFWTITVASIIYQIG   97 (577)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~lg~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~i~   97 (577)
                      ..+.+....++..+.+....+++|.|+++++|+|..+.+++.+.+.++..+++++.|+++||+ |||+++.++.++..++
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~-Grr~~l~~~~~~~~~~   86 (417)
T 2cfq_A            8 NFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKL-GLRKYLLWIITGMLVM   86 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTS-TTCCHHHHHHHHTTSC
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHH
Confidence            344445555666666777788999999999999999999999999999999999999999998 9999999888776553


Q ss_pred             HHHH---HHhhhcCCCCCCCCCCCCcccccccchhHHHHHHHHHHHhccCCcccchhhhhhccCCCCCchhhhhhhhhhh
Q 008096           98 MFSL---TLSAILPQLRPPPCQGDQVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFN  174 (577)
Q Consensus        98 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  174 (577)
                      ...+   .++...                     ...++.++++.+++.+...+...+...++.++. .   +.++..++
T Consensus        87 ~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~---~~~~~~~g  141 (417)
T 2cfq_A           87 FAPFFIFIFGPLL---------------------QYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKV-S---RRSNFEFG  141 (417)
T ss_dssp             HHHHHHHTHHHHH---------------------HTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHH-H---HHHTCCHH
T ss_pred             HHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHh-h---hhcccchH
Confidence            2222   121100                     001234455555555554444455454444321 1   12566677


Q ss_pred             HHHHHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHHHHHHHHHccccccccCCCCChhhHHHHHHHHHHhhccccCC
Q 008096          175 WYYFVMGAAVLVAVTVLVYIQDNVGWNWGLGIPTVAMFLSIIAFVFGYPLYRNLNPAGSPFVRLMQVCVAAFRKRNLDMV  254 (577)
Q Consensus       175 ~~~~~~~ig~~lg~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (577)
                      ..+...++|..++|.+++++.+ .+|++.|++.++..++..+......|+.+   +..+   +           +     
T Consensus       142 ~~~~~~~~g~~~~~~l~~~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~~~---~~~~---~-----------~-----  198 (417)
T 2cfq_A          142 RARMFGCVGWALGASIVGIMFT-INNQFVFWLGSGCALILAVLLFFAKTDAP---SSAT---V-----------A-----  198 (417)
T ss_dssp             HHSSSTTTHHHHHHHHHHHHHH-HCSHHHHTTTTTTTTTHHHHSCSSCCCCS---CSSC---S-----------S-----
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHHHHHHHHHHHcCcccc---cccc---c-----------c-----
Confidence            7777889999999999998876 68999998776654333332222111100   0000   0           0     


Q ss_pred             CCCcccccccchhhhhhcCCcccccccchhhhhhhhccccccCCCCCcccccchhhhhhhhhhhhhhhH-HHHHHHHHHH
Q 008096          255 SDPNVLYQNEELDASICLDGKLLHTKHMKFLDKAAIVTEEDDIKSPNLWRLNTVHRVEELKSVIRMGPI-WASGILLITA  333 (577)
Q Consensus       255 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~l-~~~~~~~~~~  333 (577)
                      +.+    +.+          +    +                   ...++.  .+.....+........ ......+...
T Consensus       199 ~~~----~~~----------~----~-------------------~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (417)
T 2cfq_A          199 NAV----GAN----------H----S-------------------AFSLKL--ALELFRQPKLWFLSLYVIGVSCTYDVF  239 (417)
T ss_dssp             SSS----SSC----------C----C-------------------CCCHHH--HHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccc----ccc----------c----c-------------------cccHHH--HHHHhcCCchhhHHHHHHHHHHHHHHH
Confidence            000    000          0    0                   000000  0000011111111111 1111111111


Q ss_pred             hhccceeEEeeccccccccccccc-cccchhhhhhHHHHHHHHHhhhhhhhhccccccCCCCCCCchhHHHHHHHHHHHH
Q 008096          334 YAQQGTFSLQQAKSMDRHLTKSFQ-IPAGSMSVFTMVSMLSTIALYDRIIIPVARKFTGLDRGITFLHRMGIGFVISVLA  412 (577)
Q Consensus       334 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ig~~~~~l~  412 (577)
                      ..+.+.++.   ...+..   +.+ ...+.....+.+..+++..+.++    +.||+++|+       .+.++.++.+++
T Consensus       240 ~~~~~~~~~---~~~~~~---~~~~~~~g~~~~~~~~~~~~~~~~~g~----l~dr~g~~~-------~l~~~~~~~~~~  302 (417)
T 2cfq_A          240 DQQFANFFT---SFFATG---EQGTRVFGYVTTMGELLNASIMFFAPL----IINRIGGKN-------ALLLAGTIMSVR  302 (417)
T ss_dssp             HHHHHHHHH---HTSSSH---HHHTHHHHHHHHHHHHHHHHHHHHHHH----HHHHHCHHH-------HHHHHHHHHHHH
T ss_pred             HHHHHHHHH---HHHhcc---CCChhHHHHHHHHHHHHHHHHHHHHHH----HHHHhcHHH-------HHHHHHHHHHHH
Confidence            111111110   000000   000 00123333444444445555444    555654332       255666666665


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCCCCccccchhhHHHHHHHHHHHHHHHHhhhhhhhhhcccCcccHHHHHHHH-HHHHhH
Q 008096          413 TLVAGFVEMKRKQAALAHGLVDKPHIIIPISVLWLVPQYSLHGIAEAFMSVGHLEFLYDQAPESMRSTATALF-WTANSI  491 (577)
Q Consensus       413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~gi~~~~~~~~~~~~v~~~~P~~~rg~~~gi~-~~~~~l  491 (577)
                      +++.....                      +.+.+++..++++++.....+..+.++.|..|++.||++.++. ++.+.+
T Consensus       303 ~~~~~~~~----------------------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~l  360 (417)
T 2cfq_A          303 IIGSSFAT----------------------SALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQL  360 (417)
T ss_dssp             HHHHTTCC----------------------SHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHH
T ss_pred             HHHHHHhc----------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhH
Confidence            54443221                      3344445556667777777777888999999999999999994 888999


Q ss_pred             HHHHHHHHHHHHhhhcCCCCCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhhhhhc
Q 008096          492 GNYVSTLLVTLVHKFSAGPNGSNWLPDNNLNKGKLEYFYWLITLLQVVNVIYYFFCAKI  550 (577)
Q Consensus       492 g~~l~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  550 (577)
                      |+.++|.+.|.+.+..                 ++...|.+.+++.+++.++.++..++
T Consensus       361 g~~~gp~l~G~l~~~~-----------------g~~~~f~~~~~~~l~~~~~~~~~~~~  402 (417)
T 2cfq_A          361 AMIFMSVLAGNMYESI-----------------GFQGAYLVLGLVALGFTLISVFTLSG  402 (417)
T ss_dssp             HHHHHTHHHHTHHHHS-----------------HHHHHHHHHHHHHHHHHHHHTTSSCC
T ss_pred             HHHHhhhhHHHHHHhc-----------------CcHHHHHHHHHHHHHHHHHHHhhhcC
Confidence            9999999999876532                 23455777777777777766655543

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.37  E-value=1.8e-12  Score=137.24  Aligned_cols=179  Identities=14%  Similarity=0.119  Sum_probs=149.1

Q ss_pred             ceehHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhHhhhhchhhhhhhhhhc-cchhHHHHHHHHHHH
Q 008096           17 ITMPFIFANEVCEKLAVVGFHANMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADTY-AGRFWTITVASIIYQ   95 (577)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~lg~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~-~Grk~~~~~~~~~~~   95 (577)
                      +.++.+....++..+..+++..++|.|+++.+|++..+.+++.+...++..++.++.|+++||+ .|||+.+.++.++..
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~  331 (451)
T 1pw4_A          252 KLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLV  331 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHH
Confidence            4556666678888888899999999999988999999999999999999999999999999994 278888877776655


Q ss_pred             -HHHHHHHHhhhcCCCCCCCCCCCCcccccccchhHHHHHHHHHHHhccCCcccchhhhhhccCCCCCchhhhhhhhhhh
Q 008096           96 -IGMFSLTLSAILPQLRPPPCQGDQVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFN  174 (577)
Q Consensus        96 -i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  174 (577)
                       ++.+++.+..                    ..+.+.+.+..++.|++.+...+...+++.|.+|+++      |+++++
T Consensus       332 ~~~~~~~~~~~--------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~~  385 (451)
T 1pw4_A          332 TIATIVYWMNP--------------------AGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKA------AGTAAG  385 (451)
T ss_dssp             HHHHHHTTSCC--------------------TTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTH------HHHHHH
T ss_pred             HHHHHHHHHhc--------------------ccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhh------hhhHHH
Confidence             5544444321                    1245667777888899999988999999999999887      999999


Q ss_pred             HHHHHHHH-HHHHHHHHHHhhcccccchhhhHHHHHHHHHHHHHHHHc
Q 008096          175 WYYFVMGA-AVLVAVTVLVYIQDNVGWNWGLGIPTVAMFLSIIAFVFG  221 (577)
Q Consensus       175 ~~~~~~~i-g~~lg~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~  221 (577)
                      +++...++ |..++|.+.|++.+..||+..|++.+++.+++.++....
T Consensus       386 ~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  433 (451)
T 1pw4_A          386 FTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVV  433 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999 999999999999999999999998888777766655543

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.30  E-value=3.1e-11  Score=127.34  Aligned_cols=168  Identities=14%  Similarity=0.094  Sum_probs=135.6

Q ss_pred             ceehHHHHHHHHHHHHHHHHHHHHHHH-HHHhcCCChHHHHHHHHHHhHhhhhchhhhhhhhhhccchhHHHHHHHHHHH
Q 008096           17 ITMPFIFANEVCEKLAVVGFHANMISY-LTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADTYAGRFWTITVASIIYQ   95 (577)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~l~~~-l~~~lg~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~   95 (577)
                      +.++......++.....+++..+++.| +++.+|++..+++++.+...++..++.++.|+++||+ |||+.+.++.++..
T Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~~~~~~~~~~  336 (438)
T 3o7q_A          258 RHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRF-APHKVLAAYALIAM  336 (438)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHH
Confidence            445555666677777788888999999 8888899999999999999999999999999999998 99999999998888


Q ss_pred             HHHHHHHHhhhcCCCCCCCCCCCCcccccccchhHHHHHHHHHHHhccCCcccchhhhhhccCCCCCchhhhhhhhhhhH
Q 008096           96 IGMFSLTLSAILPQLRPPPCQGDQVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNW  175 (577)
Q Consensus        96 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  175 (577)
                      ++.+++.+..                      +... .+..++.|++.+...|...++..|.+|++       ++.+.++
T Consensus       337 ~~~~~~~~~~----------------------~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~  386 (438)
T 3o7q_A          337 ALCLISAFAG----------------------GHVG-LIALTLCSAFMSIQYPTIFSLGIKNLGQD-------TKYGSSF  386 (438)
T ss_dssp             HHHHHHHHCC----------------------HHHH-HHHHHHHHHHHTTHHHHHHHHHHSSCGGG-------HHHHHHH
T ss_pred             HHHHHHHHcC----------------------CcHH-HHHHHHHHHHHHHHHHHHHHHHHhhcccc-------ccchhhH
Confidence            8877777644                      3333 33447888999999999999999998843       3444555


Q ss_pred             HHHHHHHHHHHHHHHHHhhccccc-chhhhHHHHHHHHHHHH
Q 008096          176 YYFVMGAAVLVAVTVLVYIQDNVG-WNWGLGIPTVAMFLSII  216 (577)
Q Consensus       176 ~~~~~~ig~~lg~~i~~~l~~~~g-w~~~f~~~~~~~~~~~~  216 (577)
                      .. ...+|..++|.+.|++.+..| ++..|++.+++.++..+
T Consensus       387 ~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~  427 (438)
T 3o7q_A          387 IV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFI  427 (438)
T ss_dssp             HH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHHH
T ss_pred             HH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence            44 567999999999999999988 99999877665544433

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.25  E-value=1.2e-11  Score=130.55  Aligned_cols=168  Identities=8%  Similarity=0.047  Sum_probs=126.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCC---ChHHHHHHHHHHhHhhhhchhhhhhhhhhccchhHHHHHHHHHHHHHHHHHHH
Q 008096           27 VCEKLAVVGFHANMISYLTTQLHM---PLTKAANTLTNFGGTGSLTPLIGAFVADTYAGRFWTITVASIIYQIGMFSLTL  103 (577)
Q Consensus        27 ~~~~~~~~~~~~~l~~~l~~~lg~---s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~i~~~~~~~  103 (577)
                      +.....++....++|.|+.+.++.   +..+.+++.+...++..++.++.|+++||+ |||+.+..+.++..++.+.+++
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~l~~~~~~~~~~~~~~~~  308 (417)
T 2cfq_A          230 IGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRI-GGKNALLLAGTIMSVRIIGSSF  308 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-cHHHHHHHHHHHHHHHHHHHHH
Confidence            333444555556788898776653   344567777777788888999999999998 9999999888877776655554


Q ss_pred             hhhcCCCCCCCCCCCCcccccccchhHHHHHHHHHHHhccCCcccchhhhhhccCCCCCchhhhhhhhhhhH-HHHHHHH
Q 008096          104 SAILPQLRPPPCQGDQVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNW-YYFVMGA  182 (577)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~~i  182 (577)
                      ..                      +.+.+++..++.+++.+...+...++.+|.+|++.      |+++.++ ++....+
T Consensus       309 ~~----------------------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~~~~~~l  360 (417)
T 2cfq_A          309 AT----------------------SALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRF------SATIYLVCFCFFKQL  360 (417)
T ss_dssp             CC----------------------SHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHH------HHHHHHHHHTTTHHH
T ss_pred             hc----------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH------HHHHHHHHHHHHHhH
Confidence            32                      34556666667777776667777889999999766      8888888 5777889


Q ss_pred             HHHHHHHHHHhhcccccchhhhHHHHHHHHHHHHHHHHccc
Q 008096          183 AVLVAVTVLVYIQDNVGWNWGLGIPTVAMFLSIIAFVFGYP  223 (577)
Q Consensus       183 g~~lg~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~  223 (577)
                      |..++|.++|++.+..|+...|.+.++..+++.++.+...+
T Consensus       361 g~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~  401 (417)
T 2cfq_A          361 AMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLS  401 (417)
T ss_dssp             HHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred             HHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhc
Confidence            99999999999988888888888877777666665544443

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.13  E-value=1.2e-10  Score=125.13  Aligned_cols=185  Identities=9%  Similarity=-0.030  Sum_probs=138.6

Q ss_pred             ehHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhHhhhhchhhhhhhhhhccchhHHHH-----HHHHH
Q 008096           19 MPFIFANEVCEKLAVVGFHANMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADTYAGRFWTIT-----VASII   93 (577)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~lg~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~-----~~~~~   93 (577)
                      .+.+....++....++....+++.|+++.++.+..+.+++.+...++..++.++.|+++||+ |||+...     ++.++
T Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~-~~r~~~~~~~~~~~~~~  363 (491)
T 4aps_A          285 YIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAW-KKNQPSSPTKFAVGLMF  363 (491)
T ss_dssp             HHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHT-TTC---CHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHH-hccCCCchHHHHHHHHH
Confidence            34444455666666777788899999998888878888999999999999999999999998 9886544     67766


Q ss_pred             HHHHHHHHHHhhhcCCCCCCCCCCCCcccccccchhHHHHHHHHHHHhccCCcccchhhhhhccCCCCCchhhhhhhhhh
Q 008096           94 YQIGMFSLTLSAILPQLRPPPCQGDQVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYF  173 (577)
Q Consensus        94 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  173 (577)
                      ..++.+++.+......             .....+.+.+.+..++.|++.+...|...+++.|.+|++.      |+++.
T Consensus       364 ~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~------~g~~~  424 (491)
T 4aps_A          364 AGLSFLLMAIPGALYG-------------TSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAF------NSQMM  424 (491)
T ss_dssp             HHHHHTTTHHHHHHCC-------------CCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTC------SSSST
T ss_pred             HHHHHHHHHHHHHhcC-------------CCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHH------HHHHH
Confidence            6666666655321100             0011245667778888999999999999999999999988      99999


Q ss_pred             hHHHHHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHHHHHHHHHcccc
Q 008096          174 NWYYFVMGAAVLVAVTVLVYIQDNVGWNWGLGIPTVAMFLSIIAFVFGYPL  224 (577)
Q Consensus       174 ~~~~~~~~ig~~lg~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~  224 (577)
                      ++++...++|..+++.+.+++.+ .++...|++.+...+++.++.+...++
T Consensus       425 g~~~~~~~~g~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  474 (491)
T 4aps_A          425 SMWFLSSSVGSALNAQLVTLYNA-KSEVAYFSYFGLGSVVLGIVLVFLSKR  474 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHGGGGGG-SSTTHHHHHTHHHHHHHHHHHHHC---
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999988865 467777877777666666665555544

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=98.98  E-value=1.4e-08  Score=108.69  Aligned_cols=184  Identities=13%  Similarity=0.048  Sum_probs=128.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhHhhhhchhhhhhhhhhccchhHHHHHHHHHHHHHHH
Q 008096           20 PFIFANEVCEKLAVVGFHANMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADTYAGRFWTITVASIIYQIGMF   99 (577)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~lg~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~i~~~   99 (577)
                      .......++..+..+....+...++.+..+.+..+.........+...++.++++++.||+ |||+.++.+.....++.+
T Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~-Grr~~~~~~~~~~~~~~~  357 (491)
T 4gc0_A          279 VIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKF-GRKPLQIIGALGMAIGMF  357 (491)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhh-cCcchhccchHHHHHHHH
Confidence            3333344444444334444445566678888988888888888899999999999999998 999999999988888877


Q ss_pred             HHHHhhhcCCCCCCCCCCCCcccccccchhHHHHHHHHHHHhccCCcccchhhhhhccCCCCCchhhhhhhhhhhHHHHH
Q 008096          100 SLTLSAILPQLRPPPCQGDQVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFV  179 (577)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  179 (577)
                      .++.......                ........+..+..+.+. +..|....+.+|.+|.+.      |+++.++.+..
T Consensus       358 ~l~~~~~~~~----------------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~E~fPt~~------R~~~~g~~~~~  414 (491)
T 4gc0_A          358 SLGTAFYTQA----------------PGIVALLSMLFYVAAFAM-SWGPVCWVLLSEIFPNAI------RGKALAIAVAA  414 (491)
T ss_dssp             HHHHHHHTTC----------------CHHHHHHHHHHHHHHHHT-TTTHHHHHHHHHSSCTTT------HHHHHHHHHHH
T ss_pred             HHHHHHhccc----------------chHHHHHHHHHHHHHHHh-HHHHHHHHHHHHhCCHhH------HHHHHHHHHHH
Confidence            7665431111                111222222222333333 345777899999999988      99999999999


Q ss_pred             HHHHHHHHHHHHHhhcc------cccchhhhHHHHHHHHHHHHHHHHccccccc
Q 008096          180 MGAAVLVAVTVLVYIQD------NVGWNWGLGIPTVAMFLSIIAFVFGYPLYRN  227 (577)
Q Consensus       180 ~~ig~~lg~~i~~~l~~------~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~  227 (577)
                      .++|+++++.+.+.+.+      ..++...|++.+.+.+++.+..++..||++.
T Consensus       415 ~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg  468 (491)
T 4gc0_A          415 QWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKG  468 (491)
T ss_dssp             HHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCCCC
Confidence            99999999888766543      2456667877777777777777676666443

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=98.76  E-value=9.5e-10  Score=113.56  Aligned_cols=162  Identities=9%  Similarity=-0.032  Sum_probs=126.1

Q ss_pred             ceehHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhHhhhhchhhhhhhhhhccchhHHHHHHHHH-HH
Q 008096           17 ITMPFIFANEVCEKLAVVGFHANMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADTYAGRFWTITVASII-YQ   95 (577)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~lg~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~-~~   95 (577)
                      |..+......++.....+.+..++|.|+++.+|+|..+.+.+.+...++..++.++.|+++||+ |++  +..+..+ ..
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~-~~~--~~~~~~~~~~  275 (375)
T 2gfp_A          199 SGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRF-STL--MWQSVICCLL  275 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHH-HHH--HHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH--HHHHHHHHHH
Confidence            3445555677777788888899999999988999999999999999999999999999999998 772  3333332 22


Q ss_pred             HHHH--HHHHhhhcCCCCCCCCCCCCcccccccchhHHHHHHHHHHHhccCCcccchhhhhhccCCCCCchhhhhhhhhh
Q 008096           96 IGMF--SLTLSAILPQLRPPPCQGDQVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYF  173 (577)
Q Consensus        96 i~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  173 (577)
                      .+..  ......                    ..+.+.+++..++.|++.+...+...++..|.+| ++      |+++.
T Consensus       276 ~~~~~~~~~~~~--------------------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~------~g~~~  328 (375)
T 2gfp_A          276 AGLLMWIPDWFG--------------------VMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FL------AGTAG  328 (375)
T ss_dssp             TSSSSSHHHHHH--------------------HHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HH------HHHHH
T ss_pred             HHHHHHHHhhhc--------------------cccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cc------cchHH
Confidence            2222  111110                    1145667778888999999999999999999988 55      89999


Q ss_pred             hHHHHHHHHHHHHHHHHHHhhcccccchhhhHHHH
Q 008096          174 NWYYFVMGAAVLVAVTVLVYIQDNVGWNWGLGIPT  208 (577)
Q Consensus       174 ~~~~~~~~ig~~lg~~i~~~l~~~~gw~~~f~~~~  208 (577)
                      ++.+...++|..++|.+.+.+.+..+|...+++..
T Consensus       329 g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~  363 (375)
T 2gfp_A          329 ALVGGLQNIGSGVLASLSAMLPQTGQGSLGLLMTL  363 (375)
T ss_dssp             HHHHHHHHHHHHCCSTTCTHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence            99999999999999999999987777877766543

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=98.18  E-value=5.4e-06  Score=89.29  Aligned_cols=139  Identities=16%  Similarity=0.135  Sum_probs=96.2

Q ss_pred             cchhhhhhHHHHHHHHHhhhhhhhhccccc-cCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCc
Q 008096          360 AGSMSVFTMVSMLSTIALYDRIIIPVARKF-TGLDRGITFLHRMGIGFVISVLATLVAGFVEMKRKQAALAHGLVDKPHI  438 (577)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~-~~~~~~~~~~~~~~ig~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  438 (577)
                      .+.+.+...+...++.++.++    +.||+ ++|+.       +.++.++.+++.++.....                  
T Consensus        56 ~g~~~~~~~~~~~~~~~~~G~----l~dr~~g~r~~-------~~~~~~~~~~~~~~~~~~~------------------  106 (524)
T 2xut_A           56 AKDVFHSFVIGVYFFPLLGGW----IADRFFGKYNT-------ILWLSLIYCVGHAFLAIFE------------------  106 (524)
T ss_dssp             HHHHHHHHHHHHHHTHHHHHH----HHTTSSCSHHH-------HHHHHHHHHHHHHHHHHTS------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHH----HHHHHhcchHH-------HHHHHHHHHHHHHHHHHhc------------------
Confidence            344555556666666666555    55555 54432       6777777777766554321                  


Q ss_pred             cccchhhHHHHHHHHHHHHHHHHhhhhhhhhhcccCcccHHHHHHH---HHHHHhHHHHHHHHHHHHHhhhcCCCCCCCC
Q 008096          439 IIPISVLWLVPQYSLHGIAEAFMSVGHLEFLYDQAPESMRSTATAL---FWTANSIGNYVSTLLVTLVHKFSAGPNGSNW  515 (577)
Q Consensus       439 ~~~~~~~~l~~~~~l~gi~~~~~~~~~~~~v~~~~P~~~rg~~~gi---~~~~~~lg~~l~~~i~~~v~~~~~~~~~~~~  515 (577)
                         .+.+.+++..++.|++.+...+....++.|.+|++.|+.+.+.   .+....+|..+++.+.+.+.+..        
T Consensus       107 ---~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~--------  175 (524)
T 2xut_A          107 ---HSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNF--------  175 (524)
T ss_dssp             ---SCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTS--------
T ss_pred             ---ccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--------
Confidence               1556667778889999999999999999999999999877666   88889999999999877764422        


Q ss_pred             CCCCCCCcchhhHHHHHHHHHHHHHHHHHhhh
Q 008096          516 LPDNNLNKGKLEYFYWLITLLQVVNVIYYFFC  547 (577)
Q Consensus       516 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  547 (577)
                               ++.+.|++.+++.++..+..++.
T Consensus       176 ---------g~~~~f~~~~~~~~~~~~~~~~~  198 (524)
T 2xut_A          176 ---------GAAVAFGIPGVLMFVATVFFWLG  198 (524)
T ss_dssp             ---------CHHHHHHHHHHHHHHHHHHHHSS
T ss_pred             ---------cHHHHHHHHHHHHHHHHHHHHHh
Confidence                     23555666666666655555443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	577
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.95
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.91
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.27
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.23

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.95  E-value=2.4e-27  Score=248.81  Aligned_cols=161  Identities=11%  Similarity=0.067  Sum_probs=138.1

Q ss_pred             HHHHHHHHHHhcCCChHHHHHHHHHHhHhhhhchhhhhhhhhhccchhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCC
Q 008096           37 HANMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADTYAGRFWTITVASIIYQIGMFSLTLSAILPQLRPPPCQ  116 (577)
Q Consensus        37 ~~~l~~~l~~~lg~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  116 (577)
                      .+.+.++++ ++|+|.+|.+++.+++.++..+++++.|+++||+ |||+++.++.++..++.++++++.+...       
T Consensus        44 ~~~~~p~~~-~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~-g~r~~~~~~~~~~~~~~~~~~~~~~~~~-------  114 (447)
T d1pw4a_          44 FALAMPYLV-EQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILAAAVMLFMGFVPWATS-------  114 (447)
T ss_dssp             HHHHHHHTT-SSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHHHHHCHHHHS-------
T ss_pred             HHHHHHHHH-HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchHHHHHHHHHHHHHHhhccccchhhh-------
Confidence            455556776 5899999999999999999999999999999999 9999999999999999999887653332       


Q ss_pred             CCCcccccccchhHHHHHHHHHHHhccCCcccchhhhhhccCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhcc
Q 008096          117 GDQVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAVLVAVTVLVYIQD  196 (577)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~lg~~i~~~l~~  196 (577)
                                 +++.+++.|++.|++.+...+...++++|++|+++      |++++++.+.+.++|..+++.+++.+..
T Consensus       115 -----------~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~~~~~~~g~~i~~~~~~~~~~  177 (447)
T d1pw4a_         115 -----------SIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKE------RGGIVSVWNCAHNVGGGIPPLLFLLGMA  177 (447)
T ss_dssp             -----------SSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTH------HHHHHHHHHHHHHHHHTSHHHHHHHHHH
T ss_pred             -----------hHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhc------ccccccccccccchhhhhhhhhhhhHhh
Confidence                       67789999999999999999999999999999887      9999999999999999999998887665


Q ss_pred             c-ccchhhhHHHHHHHHHHHHHHHHccc
Q 008096          197 N-VGWNWGLGIPTVAMFLSIIAFVFGYP  223 (577)
Q Consensus       197 ~-~gw~~~f~~~~~~~~~~~~~~~~~~~  223 (577)
                      . .+|++.|++.+...++..++.+...+
T Consensus       178 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~  205 (447)
T d1pw4a_         178 WFNDWHAALYMPAFCAILVALFAFAMMR  205 (447)
T ss_dssp             HTCCSTTCTHHHHHHHHHHHHHHHHHCC
T ss_pred             hhhcccccchhhhhhHHHHHHHHHHhcc
Confidence            4 47999999888776655555444443

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.91  E-value=9.4e-24  Score=216.67  Aligned_cols=398  Identities=8%  Similarity=-0.037  Sum_probs=233.4

Q ss_pred             ceehHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhHhhhhchhhhhhhhhhccchhHHHHHHHHHHHH
Q 008096           17 ITMPFIFANEVCEKLAVVGFHANMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADTYAGRFWTITVASIIYQI   96 (577)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~lg~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~i   96 (577)
                      |+.+.+....++..+......+++|.|+++++|+|.+|.|++.+++.++..+++++.|+++||+ ||||++.++..+..+
T Consensus         7 ~~~~~l~~~~f~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~-grr~~l~~~~~~~~~   85 (417)
T d1pv7a_           7 TNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKL-GLRKYLLWIITGMLV   85 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHH-TTCTHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHH
Confidence            4456666677777788788889999999999999999999999999999999999999999999 999999999999888


Q ss_pred             HHHHHHHhhhcCCCCCCCCCCCCcccccccchhHHHHHHHHHHHhccCCcccchhhhhhccCCCCCchhhhhhhhhhhHH
Q 008096           97 GMFSLTLSAILPQLRPPPCQGDQVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWY  176 (577)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  176 (577)
                      +..++.+..+.+.                  .....++.+.+.+.+.+...+.......+..+++    ...+....+..
T Consensus        86 ~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~  143 (417)
T d1pv7a_          86 MFAPFFIFIFGPL------------------LQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKV----SRRSNFEFGRA  143 (417)
T ss_dssp             THHHHHHHTHHHH------------------HHTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHHH----HHHHSCCHHHH
T ss_pred             HHHHHHHhhhhhh------------------HHHHHHHHHHHhhhcccccccchhhcccccccch----hhhhHHHHHHH
Confidence            8888877652111                  2222334444444444444444444443333321    12255567777


Q ss_pred             HHHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHHHHHHHHHccccccccCCCCChhhHHHHHHHHHHhhccccCCCC
Q 008096          177 YFVMGAAVLVAVTVLVYIQDNVGWNWGLGIPTVAMFLSIIAFVFGYPLYRNLNPAGSPFVRLMQVCVAAFRKRNLDMVSD  256 (577)
Q Consensus       177 ~~~~~ig~~lg~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (577)
                      ......+..+++.+++.+.+. +|+..+........+..+...+..++.+..++..+ ..+            +  ..+.
T Consensus       144 ~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~------------~--~~~~  207 (417)
T d1pv7a_         144 RMFGCVGWALGASIVGIMFTI-NNQFVFWLGSGCALILAVLLFFAKTDAPSSATVAN-AVG------------A--NHSA  207 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHSSCCCSCSSSCSSH-HHH------------S--CCCC
T ss_pred             hhhhccccccccccccccccc-cccccccchhhHHHHHHHHHHHHhcccccchhhhh-hhh------------h--hccc
Confidence            778888999999999888764 45555555544443333333333332211111110 000            0  0000


Q ss_pred             CcccccccchhhhhhcCCcccccccchhhhhhhhccccccCCCCCcccccchhhhhhhhhhhh-hhhHHHHHHHHHHHhh
Q 008096          257 PNVLYQNEELDASICLDGKLLHTKHMKFLDKAAIVTEEDDIKSPNLWRLNTVHRVEELKSVIR-MGPIWASGILLITAYA  335 (577)
Q Consensus       257 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~-~~~l~~~~~~~~~~~~  335 (577)
                                                                  ....  ........+.... ................
T Consensus       208 --------------------------------------------~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (417)
T d1pv7a_         208 --------------------------------------------FSLK--LALELFRQPKLWFLSLYVIGVSCTYDVFDQ  241 (417)
T ss_dssp             --------------------------------------------CCHH--HHHHHTTSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             --------------------------------------------cccc--ccccccccccccchhhhhHHHHHHHHhhhc
Confidence                                                        0000  0000000000000 0111111111111100


Q ss_pred             ccceeEEeeccccccccccccccccchhhhhhHHHHHHHHHhhhhhhhhccccccCCCCCCCchhHHHHHHHHHHHHHHH
Q 008096          336 QQGTFSLQQAKSMDRHLTKSFQIPAGSMSVFTMVSMLSTIALYDRIIIPVARKFTGLDRGITFLHRMGIGFVISVLATLV  415 (577)
Q Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ig~~~~~l~~~~  415 (577)
                      ....+    ......... ..............+...+...+    ..++.||.+++       +.+.++.++.+++++.
T Consensus       242 ~~~~~----~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~----~~~l~~r~~~~-------~~~~~~~~~~~~~~~~  305 (417)
T d1pv7a_         242 QFANF----FTSFFATGE-QGTRVFGYVTTMGELLNASIMFF----APLIINRIGGK-------NALLLAGTIMSVRIIG  305 (417)
T ss_dssp             HHHHH----HTTSSSCHH-HHHHHHHHHHHHHHHHHHHHHTT----HHHHHHHHCHH-------HHHHHHHHHHHHHHHH
T ss_pred             ccccc----ccccccccc-cchhhhcccccccccccccchhh----hhhhhcccccc-------cchhhhHHHHHHhhhc
Confidence            00000    000000000 00000112222223333333333    44566665433       2367777777776666


Q ss_pred             HHHHHHHHHHHHHhcCCCCCCCccccchhhHHHHHHHHHHHHHHHHhhhhhhhhhcccCcccHHHHHHHH-HHHHhHHHH
Q 008096          416 AGFVEMKRKQAALAHGLVDKPHIIIPISVLWLVPQYSLHGIAEAFMSVGHLEFLYDQAPESMRSTATALF-WTANSIGNY  494 (577)
Q Consensus       416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~gi~~~~~~~~~~~~v~~~~P~~~rg~~~gi~-~~~~~lg~~  494 (577)
                      .....                      +.+.+++..++.+++.+...+..+.++.|..|++.|+++.|+. +..+.+|..
T Consensus       306 ~~~~~----------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  363 (417)
T d1pv7a_         306 SSFAT----------------------SALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMI  363 (417)
T ss_dssp             HHTCC----------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHH
T ss_pred             ccccc----------------------ccchhhHHHHHHHHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHH
Confidence            55433                      5666677778899999999999999999999999999999986 467889999


Q ss_pred             HHHHHHHHHhhhcCCCCCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhhhhhccccc
Q 008096          495 VSTLLVTLVHKFSAGPNGSNWLPDNNLNKGKLEYFYWLITLLQVVNVIYYFFCAKIYTFK  554 (577)
Q Consensus       495 l~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  554 (577)
                      +++.+.|.+.|..                 ++...|++.+++.++..++.++..++.+..
T Consensus       364 i~~~~~G~l~~~~-----------------g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  406 (417)
T d1pv7a_         364 FMSVLAGNMYESI-----------------GFQGAYLVLGLVALGFTLISVFTLSGPGPL  406 (417)
T ss_dssp             HHHHHHHHHHHHH-----------------CHHHHHHHHHHHHHHHHHHHHHHSCCSSCT
T ss_pred             HHHHHHHHHHHHH-----------------CHHHHHHHHHHHHHHHHHHHHHhhcCCCcc
Confidence            9999999987754                 234557788888887777777776654433

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.27  E-value=8.7e-12  Score=128.77  Aligned_cols=181  Identities=13%  Similarity=0.083  Sum_probs=140.7

Q ss_pred             ceehHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhHhhhhchhhhhhhhhhccchhHHHHHHHHHHHH
Q 008096           17 ITMPFIFANEVCEKLAVVGFHANMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADTYAGRFWTITVASIIYQI   96 (577)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~lg~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~i   96 (577)
                      +.++.+....++.....+++..+++.|+.+.++++..+.++......++..++.+++|+++||+ +|++..........+
T Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~  327 (447)
T d1pw4a_         249 KLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKV-FRGNRGATGVFFMTL  327 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-STTCHHHHHHHHHHH
T ss_pred             chHHHHHHHhhhhhhhhhcchhhhhhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhc-cccccccccchhHHH
Confidence            4555666677888888899999999999999999999999999999999999999999999998 876654444433333


Q ss_pred             HHHHHHHhhhcCCCCCCCCCCCCcccccccchhHHHHHHHHHHHhccCCcccchhhhhhccCCCCCchhhhhhhhhhhHH
Q 008096           97 GMFSLTLSAILPQLRPPPCQGDQVCKEADTGQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWY  176 (577)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  176 (577)
                      ...........                 ...+.+...+..++.|++.++..+...++..|.+|++.      |+++.++.
T Consensus       328 ~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~  384 (447)
T d1pw4a_         328 VTIATIVYWMN-----------------PAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKA------AGTAAGFT  384 (447)
T ss_dssp             HHHHHHHTTSC-----------------CTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTH------HHHHHHHH
T ss_pred             HHHHHHHHHhc-----------------ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH------HHHHHHHH
Confidence            22222221101                 12356667777888899999989999999999999877      99999998


Q ss_pred             HHHHHH-HHHHHHHHHHhhcccccchhhhHHHHHHHHHHHHHHHHc
Q 008096          177 YFVMGA-AVLVAVTVLVYIQDNVGWNWGLGIPTVAMFLSIIAFVFG  221 (577)
Q Consensus       177 ~~~~~i-g~~lg~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~  221 (577)
                      +...++ |.+++|.+.|++.+.+||+..|++...+.+++.+++...
T Consensus       385 ~~~~~~~g~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  430 (447)
T d1pw4a_         385 GLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVV  430 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHH
Confidence            888777 567789999999999999999988777666655554433

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.23  E-value=4.7e-12  Score=128.07  Aligned_cols=148  Identities=8%  Similarity=0.008  Sum_probs=125.6

Q ss_pred             hcCCChHHHHHHHHHHhHhhhhchhhhhhhhhhccchhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCccccccc
Q 008096           47 QLHMPLTKAANTLTNFGGTGSLTPLIGAFVADTYAGRFWTITVASIIYQIGMFSLTLSAILPQLRPPPCQGDQVCKEADT  126 (577)
Q Consensus        47 ~lg~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  126 (577)
                      +.+.+....+.......++..++..+.+++.||+ |+|+.+.++.++..++.+++.+..                     
T Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~-~~~~~~~~~~~~~~~~~~~~~~~~---------------------  310 (417)
T d1pv7a_         253 TGEQGTRVFGYVTTMGELLNASIMFFAPLIINRI-GGKNALLLAGTIMSVRIIGSSFAT---------------------  310 (417)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHTCC---------------------
T ss_pred             ccccchhhhcccccccccccccchhhhhhhhccc-ccccchhhhHHHHHHhhhcccccc---------------------
Confidence            3445677788888888999999999999999998 999999999999988888887654                     


Q ss_pred             chhHHHHHHHHHHHhccCCcccchhhhhhccCCCCCchhhhhhhhhhhHH-HHHHHHHHHHHHHHHHhhcccccchhhhH
Q 008096          127 GQLAILYASLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWY-YFVMGAAVLVAVTVLVYIQDNVGWNWGLG  205 (577)
Q Consensus       127 ~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~-~~~~~ig~~lg~~i~~~l~~~~gw~~~f~  205 (577)
                       +.+.+++..++.|++.+...+...+++.|.+|++.      |++..++. .....+|..++|.+.|++.+.+||+..|+
T Consensus       311 -~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~~  383 (417)
T d1pv7a_         311 -SALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRF------SATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYL  383 (417)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGG------HHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred             -ccchhhHHHHHHHHHHHHHHHHHHHHHHHHCCHhH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH
Confidence             67778888889999999999999999999999887      89999985 45667999999999999999999999998


Q ss_pred             HHHHHHHHHHHHHHHccc
Q 008096          206 IPTVAMFLSIIAFVFGYP  223 (577)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~  223 (577)
                      +.+++.++..++..+..+
T Consensus       384 ~~~~~~~~~~~~~~~~l~  401 (417)
T d1pv7a_         384 VLGLVALGFTLISVFTLS  401 (417)
T ss_dssp             HHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHHHHHhhc
Confidence            887776666555544443