Citrus Sinensis ID: 008104

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------
MDSDESPSPPPQLTGVVIITLPPPNNPSLGKTITAYTLTDNSPQSQQTRHRQQQEHPLPPQLHPPQNSQFNFSLPMLFPGLPRKLFLFLAISIFALILYGSVFSYTLQDRYKSNNDDENKESFVFPLYHKFGIREVSQRDAEFKLGRFVDLDGESVVASVNDGIIRPHKSKINKKLVSSNAVAVDSSSIFPLRGNIYPDGLYFTYMIVGNPPRPYYLDMDTGSDLTWIQCDAPCSSCAKGANPLYKPRMGNILPYKDSLCMEIQRNHKPGYCETCQQCDYEIEYADHSSSMGVLARDELHLTIENGSLTKPNVVFGCAYDQQGLLLNTLVKTDGILGLSRAKVSLPSQLASQGIIKNVVGHCLTTNAGGGGYMFLGHDLVPSWGMAWVPMLDSPFMELYHTEILKINYGSSPLNLGARNSQVGWALFDTGSSYTYFTKQAYSELIASLKEVSSDGLVLDASDPTLPVCWRAKFPIRSIVDVKQFFKTLTLHFGSKWQIVSTKFHISPEGYLVISKKGNICLGILDGSEVHNGSTIILGDISLRGQLVVYDNVNKRIGWAKSHCMNPGRFKSLPFLEG
ccccccccccccEEEEEEEEcccccccccccEEEEEEEcccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccccHHccccccccccccccEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEcccccEEEEEEEcccccEEEccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEccccEEEEEEEEEEEEEEEcccccccccEEEEEEEEcccccccccccccEEEccccccccHHHHHccccccccEEEEEccccccccEEEEEccccccccccEEEEcccccccccEEEEEEEEEEccEEEEccccccccccEEEEcccccccccHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccEEEEEEccccEEEEEEEEEccccEEEEEcccEEEEEEEcccccccccEEEEccEEEEcEEEEEEccccEEEEEcccccccccccccccccc
cccccccccccccEEEEEEEcccccccccccEEEEEEEcccccccccccccccccccccccccccccccEEEccHccccccHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHcccccccccccEEEEcccccccccccccHHHHHccccccHccHHHHHHHHHcccHHHHHHHHHHHHHHccccccccccccccccccccEEEEEEEEEccccccEEEEEEccccccEEEccccccccccccccccccccccccccccHHHHHHHccccccccccccccEEEEEEcccccccEEEEEEEEEEEEEcccEEEccEEEEEEEcccccEEEEccccccEcccccccccHHHHHHHccccccEEEEEEEccccccEEEEEcccccccccEEEEEEEcccccccEEEEEEEEEEccEEEEEccccccccEEEEEccccEEcccHHHHHHHHHHHccccccccEEccccccccEEEccccEEEEEccccccccEEEEEEcccEEEccEEEcccHHHEEEEEcccEEEEEcccccccccccEEEEEEEEEccEEEEEEccccEEEEEEccccccccccccccccc
mdsdespspppqltgvviitlpppnnpslgktitaytltdnspqsqqtrhrqqqehplppqlhppqnsqfnfslpmlfpglprKLFLFLAISIFALILYGSVFSYTLQDryksnnddenkesfvfplyhkfgirevsqrdaefklgrfvdldgesvvasvndgiirphkskINKKLvssnavavdsssifplrgniypdglYFTYMivgnpprpyyldmdtgsdltwiqcdapcsscakganplykprmgnilpykdslcmeiqrnhkpgycetcqqcdyeieyadhsssmgvlarDELHltiengsltkpnvvfgcaydqqgLLLNTLVKTdgilglsrakvslpsqlasqGIIKNVVGhclttnaggggymflghdlvpswgmawvpmldspfmeLYHTEILKInygssplnlgarnSQVGWALfdtgssytyFTKQAYSELIASLKEvssdglvldasdptlpvcwrakfpirsiVDVKQFFKTLTlhfgskwqivstkfhispegylviskkgniclgildgsevhngstiilgdislrgqlvvYDNVNKRIGWakshcmnpgrfkslpfleg
mdsdespspppqLTGVVIITLPPPNNPSLGKTITAYTLTDNSPQSQQTRHRQQQEHPLPPQLHPPQNSQFNFSLPMLFPGLPRKLFLFLAISIFALILYGSVFSYTLQDRYKSNNDDENKESFVFPLYHKFGIREVSQRDAEFKLgrfvdldgesvvasvndgiirphkskinkklvssnavavdsssifplrgNIYPDGLYFTYMIVGNPPRPYYLDMDTGSDLTWIQCDAPCSSCAKGANPLYKPRMGNILPYKDSLCMEIQRNHKPGYCETCQQCDYEIEYADHSSSMGVLARDELHLTIENGSLTKPNVVFGCAYDQQGLLLNTLVKTDGILGLSRAKVSLPSQLASQGIIKNVVGHCLTTNAGGGGYMFLGHDLVPSWGMAWVPMLDSPFMELYHTEILKINYGSSPLNLGARNSQVGWALFDTGSSYTYFTKQAYSELIASLKEVSSDGLVLDASDPTLPVCWRAKFPIRSIVDVKQFFKTLTLHFGSKWQIVSTKFHISPEGYLVISKKGNICLGILDGSEVHNGSTIIlgdislrgqLVVYDNVNKRIGwakshcmnpgrfkslpfleg
MDSDESPSPPPQLTGVVIITLPPPNNPSLGKTITAYTLTDNspqsqqtrhrqqqehplppqlhppqNSQFNFSLPMLFPGLPRKlflflaisifalilYGSVFSYTLQDRYKSNNDDENKESFVFPLYHKFGIREVSQRDAEFKLGRFVDLDGESVVASVNDGIIRPHKSKINKKLvssnavavdsssIFPLRGNIYPDGLYFTYMIVGNPPRPYYLDMDTGSDLTWIQCDAPCSSCAKGANPLYKPRMGNILPYKDSLCMEIQRNHKPGYCETCQQCDYEIEYADHSSSMGVLARDELHLTIENGSLTKPNVVFGCAYDQQGLLLNTLVKTDGILGLSRAKVSLPSQLASQGIIKNVVGHCLTTNAGGGGYMFLGHDLVPSWGMAWVPMLDSPFMELYHTEILKINYGSSPLNLGARNSQVGWALFDTGSSYTYFTKQAYSELIASLKEVSSDGLVLDASDPTLPVCWRAKFPIRSIVDVKQFFKTLTLHFGSKWQIVSTKFHISPEGYLVISKKGNICLGILDGSEVHNGSTIILGDISLRGQLVVYDNVNKRIGWAKSHCMNPGRFKSLPFLEG
***************VVIITL************************************************FNFSLPMLFPGLPRKLFLFLAISIFALILYGSVFSYTLQDRYK********ESFVFPLYHKFGIREVSQRDAEFKLGRFVDLDGESVVASVNDGIIRPHKSKINKKLVSSNAVAVDSSSIFPLRGNIYPDGLYFTYMIVGNPPRPYYLDMDTGSDLTWIQCDAPCSSCAKGANPLYKPRMGNILPYKDSLCMEIQRNHKPGYCETCQQCDYEIEYADHSSSMGVLARDELHLTIENGSLTKPNVVFGCAYDQQGLLLNTLVKTDGILGLSRAKVSLPSQLASQGIIKNVVGHCLTTNAGGGGYMFLGHDLVPSWGMAWVPMLDSPFMELYHTEILKINYGSSPLNLGARNSQVGWALFDTGSSYTYFTKQAYSELIASLKEVSSDGLVLDASDPTLPVCWRAKFPIRSIVDVKQFFKTLTLHFGSKWQIVSTKFHISPEGYLVISKKGNICLGILDGSEVHNGSTIILGDISLRGQLVVYDNVNKRIGWAKSHCMNPG**********
**************GVVIITLPPPNNPSLGKTITAYTL****************************************PGLPRKLFLFLAISIFALILYGSVFSY*****************************************************************************************NIYPDGLYFTYMIVGNPPRPYYLDMDTGSDLTWIQCDAPCSSCAKGANPLYKPRMGNILPYKDSLCM**************QQCDYEIEYADHSSSMGVLARDELHLTIENGSLTKPNVVFGCAYDQQGLLLNTLVKTDGILGLSRAKVSLPSQLASQGIIKNVVGHCLTTNAGGGGYMFLGHDLVPSWGMAWVPMLDSPFMELYHTEILKINYGSSPLNLGARNSQVGWALFDTGSSYTYFTKQAYSELIASLKEVSSD*****ASDPTLPVCWRAKFPIRSIVDVKQFFKTLTLHFGSKWQIVSTKFHISPEGYLVISKKGNICLGILDGSEVHNGSTIILGDISLRGQLVVYDNVNKRIGWAKSHCMNPGRFKS*PFL**
***********QLTGVVIITLPPPNNPSLGKTITAYTLTD*****************LPPQLHPPQNSQFNFSLPMLFPGLPRKLFLFLAISIFALILYGSVFSYTLQDRYKSNNDDENKESFVFPLYHKFGIREVSQRDAEFKLGRFVDLDGESVVASVNDGIIRPHKSKINKKLVSSNAVAVDSSSIFPLRGNIYPDGLYFTYMIVGNPPRPYYLDMDTGSDLTWIQCDAPCSSCAKGANPLYKPRMGNILPYKDSLCMEIQRNHKPGYCETCQQCDYEIEYADHSSSMGVLARDELHLTIENGSLTKPNVVFGCAYDQQGLLLNTLVKTDGILGLSRAKVSLPSQLASQGIIKNVVGHCLTTNAGGGGYMFLGHDLVPSWGMAWVPMLDSPFMELYHTEILKINYGSSPLNLGARNSQVGWALFDTGSSYTYFTKQAYSELIASLKEVSSDGLVLDASDPTLPVCWRAKFPIRSIVDVKQFFKTLTLHFGSKWQIVSTKFHISPEGYLVISKKGNICLGILDGSEVHNGSTIILGDISLRGQLVVYDNVNKRIGWAKSHCMNPGRFKSLPFLEG
********PPPQLTGVVIITLPPPNNPSLGKTITAYTLTDNS**************************QFNFSLPMLFPGLPRKLFLFLAISIFALILYGSVFSYTLQDRYKSNNDDENKESFVFPLYHKFGIREVSQRDAEFKLGRFVDLDGESVVASVNDGIIRPHKSKINKKLVSSNAVAVDSSSIFPLRGNIYPDGLYFTYMIVGNPPRPYYLDMDTGSDLTWIQCDAPCSSCAKGANPLYKPRMGNILPYKDSLCMEIQRNHKPGYCETCQQCDYEIEYADHSSSMGVLARDELHLTIENGSLTKPNVVFGCAYDQQGLLLNTLVKTDGILGLSRAKVSLPSQLASQGIIKNVVGHCLTTNAGGGGYMFLGHDLVPSWGMAWVPMLDSPFMELYHTEILKINYGSSPLNLGARNSQVGWALFDTGSSYTYFTKQAYSELIASLKEVSSDGLVLDASDPTLPVCWRAKFPIRSIVDVKQFFKTLTLHFGSKWQIVSTKFHISPEGYLVISKKGNICLGILDGSEVHNGSTIILGDISLRGQLVVYDNVNKRIGWAKSHCMN************
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MDSDESPSPPPQLTGVVIITLPPPNNPSLGKTITAYTLTDNSPQSQQTRHRQQQEHPLPPQLHPPQNSQFNFSLPMLFPGLPRKLFLFLAISIFALILYGSVFSYTLQDRYKSNNDDENKESFVFPLYHKFGIREVSQRDAEFKLGRFVDLDGESVVASVNDGIIRPHKSKINKKLVSSNAVAVDSSSIFPLRGNIYPDGLYFTYMIVGNPPRPYYLDMDTGSDLTWIQCDAPCSSCAKGANPLYKPRMGNILPYKDSLCMEIQRNHKPGYCETCQQCDYEIEYADHSSSMGVLARDELHLTIENGSLTKPNVVFGCAYDQQGLLLNTLVKTDGILGLSRAKVSLPSQLASQGIIKNVVGHCLTTNAGGGGYMFLGHDLVPSWGMAWVPMLDSPFMELYHTEILKINYGSSPLNLGARNSQVGWALFDTGSSYTYFTKQAYSELIASLKEVSSDGLVLDASDPTLPVCWRAKFPIRSIVDVKQFFKTLTLHFGSKWQIVSTKFHISPEGYLVISKKGNICLGILDGSEVHNGSTIILGDISLRGQLVVYDNVNKRIGWAKSHCMNPGRFKSLPFLEG
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query577 2.2.26 [Sep-21-2011]
Q0IU52410 Aspartic proteinase Asp1 no no 0.627 0.882 0.398 3e-71
A2ZC67410 Aspartic proteinase Asp1 N/A no 0.634 0.892 0.379 3e-66
Q9S9K4475 Aspartic proteinase-like no no 0.618 0.751 0.311 5e-37
Q766C3437 Aspartic proteinase nepen N/A no 0.566 0.748 0.267 1e-24
Q766C2438 Aspartic proteinase nepen N/A no 0.623 0.821 0.245 2e-19
Q9LX20528 Aspartic proteinase-like no no 0.582 0.636 0.272 8e-19
Q3EBM5447 Probable aspartic proteas no no 0.599 0.774 0.237 2e-18
Q9LS40500 Protein ASPARTIC PROTEASE no no 0.577 0.666 0.247 3e-17
Q9LHE3470 Protein ASPARTIC PROTEASE no no 0.719 0.882 0.239 7e-17
Q6XBF8437 Aspartic proteinase CDR1 no no 0.571 0.755 0.278 1e-15
>sp|Q0IU52|ASP1_ORYSJ Aspartic proteinase Asp1 OS=Oryza sativa subsp. japonica GN=ASP1 PE=2 SV=1 Back     alignment and function desciption
 Score =  269 bits (688), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 156/391 (39%), Positives = 229/391 (58%), Gaps = 29/391 (7%)

Query: 186 SSSIFPLRGNIYPDGLYFTYMIVGNPPRPYYLDMDTGSDLTWIQCDAPCSSCAKGANPLY 245
           S+ +  L GN+YP G +F  M +G+P + Y+LD+DTGS LTW+QCDAPC++C    + LY
Sbjct: 22  SAVVLELHGNVYPIGHFFITMNIGDPAKSYFLDIDTGSTLTWLQCDAPCTNCNIVPHVLY 81

Query: 246 KPRMGNILPYKDSLCMEIQRN-HKPGYCETCQQCDYEIEYADHSSSMGVLARDELHLTIE 304
           KP    ++   DSLC ++  +  KP  C + +QCDY I+Y D SSSMGVL  D   L+  
Sbjct: 82  KPTPKKLVTCADSLCTDLYTDLGKPKRCGSQKQCDYVIQYVD-SSSMGVLVIDRFSLSAS 140

Query: 305 NGSLTKP-NVVFGCAYDQQGLLLNTLVKTDGILGLSRAKVSLPSQLASQGII-KNVVGHC 362
           NG  T P  + FGC YDQ     N  +  D ILGLSR KV+L SQL SQG+I K+V+GHC
Sbjct: 141 NG--TNPTTIAFGCGYDQGKKNRNVPIPVDSILGLSRGKVTLLSQLKSQGVITKHVLGHC 198

Query: 363 LTTNAGGGGYMFLGHDLVPSWGMAWVPMLDSPFMELYHTEILKINYGSSPLNLGARNSQV 422
           +++   GGG++F G   VP+ G+ W PM         + E    + G   L+  + +  +
Sbjct: 199 ISSK--GGGFLFFGDAQVPTSGVTWTPM---------NREHKYYSPGHGTLHFDSNSKAI 247

Query: 423 GWA----LFDTGSSYTYFTKQAYSELIASLKE-VSSDGLVL---DASDPTLPVCWRAKFP 474
             A    +FD+G++YTYF  Q Y   ++ +K  ++S+   L      D  L VCW+ K  
Sbjct: 248 SAAPMAVIFDSGATYTYFAAQPYQATLSVVKSTLNSECKFLTEVTEKDRALTVCWKGKDK 307

Query: 475 IRSIVDVKQFFKTLTLHFGSKWQIVSTKFHISPEGYLVISKKGNICLGILDGSEVH--NG 532
           I +I +VK+ F++L+L F    +       I PE YL+IS++G++CLGILDGS+ H    
Sbjct: 308 IVTIDEVKKCFRSLSLEFADGDK--KATLEIPPEHYLIISQEGHVCLGILDGSKEHLSLA 365

Query: 533 STIILGDISLRGQLVVYDNVNKRIGWAKSHC 563
            T ++G I++  Q+V+YD+    +GW    C
Sbjct: 366 GTNLIGGITMLDQMVIYDSERSLLGWVNYQC 396

Oryza sativa subsp. japonica (taxid: 39947)
EC: 3EC: .EC: 4EC: .EC: 2EC: 3EC: .EC: -
>sp|A2ZC67|ASP1_ORYSI Aspartic proteinase Asp1 OS=Oryza sativa subsp. indica GN=ASP1 PE=2 SV=2 Back     alignment and function description
>sp|Q9S9K4|ASPL2_ARATH Aspartic proteinase-like protein 2 OS=Arabidopsis thaliana GN=At1g65240 PE=1 SV=2 Back     alignment and function description
>sp|Q766C3|NEP1_NEPGR Aspartic proteinase nepenthesin-1 OS=Nepenthes gracilis GN=nep1 PE=1 SV=1 Back     alignment and function description
>sp|Q766C2|NEP2_NEPGR Aspartic proteinase nepenthesin-2 OS=Nepenthes gracilis GN=nep2 PE=1 SV=1 Back     alignment and function description
>sp|Q9LX20|ASPL1_ARATH Aspartic proteinase-like protein 1 OS=Arabidopsis thaliana GN=At5g10080 PE=1 SV=1 Back     alignment and function description
>sp|Q3EBM5|ASPR1_ARATH Probable aspartic protease At2g35615 OS=Arabidopsis thaliana GN=At2g35615 PE=3 SV=1 Back     alignment and function description
>sp|Q9LS40|ASPG1_ARATH Protein ASPARTIC PROTEASE IN GUARD CELL 1 OS=Arabidopsis thaliana GN=ASPG1 PE=1 SV=1 Back     alignment and function description
>sp|Q9LHE3|ASPG2_ARATH Protein ASPARTIC PROTEASE IN GUARD CELL 2 OS=Arabidopsis thaliana GN=ASPG2 PE=2 SV=1 Back     alignment and function description
>sp|Q6XBF8|CDR1_ARATH Aspartic proteinase CDR1 OS=Arabidopsis thaliana GN=CDR1 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query577
255541790583 protein with unknown function [Ricinus c 0.982 0.972 0.667 0.0
224130234603 predicted protein [Populus trichocarpa] 0.970 0.928 0.636 0.0
225455900 686 PREDICTED: aspartic proteinase Asp1-like 0.946 0.795 0.621 0.0
449439393570 PREDICTED: aspartic proteinase Asp1-like 0.967 0.978 0.565 0.0
297734190473 unnamed protein product [Vitis vinifera] 0.816 0.995 0.657 0.0
356522749 1336 PREDICTED: lysine-specific histone demet 0.942 0.407 0.577 0.0
356529585 1388 PREDICTED: lysine-specific histone demet 0.941 0.391 0.584 0.0
297847186578 aspartyl protease family protein [Arabid 0.967 0.965 0.542 1e-172
18402471583 aspartyl protease [Arabidopsis thaliana] 0.967 0.957 0.533 1e-169
242062640557 hypothetical protein SORBIDRAFT_04g02899 0.902 0.935 0.469 1e-145
>gi|255541790|ref|XP_002511959.1| protein with unknown function [Ricinus communis] gi|223549139|gb|EEF50628.1| protein with unknown function [Ricinus communis] Back     alignment and taxonomy information
 Score =  796 bits (2055), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 396/593 (66%), Positives = 465/593 (78%), Gaps = 26/593 (4%)

Query: 1   MDSDESPSPPPQLTGVVIITLPPPNNPSLGKTITAYTLTDNS-----PQSQQTR------ 49
           M+SD+  S       VVII+LPPPNNPSLGKTITA+TLTD+      PQS Q        
Sbjct: 1   MESDDQSSH----VKVVIISLPPPNNPSLGKTITAFTLTDDDHDATYPQSHQNHEQEPSI 56

Query: 50  ---HRQQQEHPLPPQLHPPQNSQFNFSLPMLFPGLPRKLFLFLAISIFALILYGSVFSYT 106
              HR+ Q     P L PPQN Q  FS   L+   PRKL   L IS+FA+I+Y S+FS T
Sbjct: 57  IQTHRESQLPVQSPSL-PPQNPQIQFSFSGLYFSTPRKLLFLLCISLFAVIVYRSLFSNT 115

Query: 107 LQDRYKSNND-DENKESFVFPLYHKFGIREVSQRDAEFKLGRFVDLDGESVVASVNDG-I 164
           L +   S++D DE  +SF+FPLYHKFGIRE+SQ + E K  R V    ES+VASVND  +
Sbjct: 116 LLELKVSDDDNDEKTKSFIFPLYHKFGIREISQSNLEHKSIRSVY--KESLVASVNDDDV 173

Query: 165 IRPHKSKINKKLVSSNAVAVDSSSIFPLRGNIYPDGLYFTYMIVGNPPRPYYLDMDTGSD 224
           I P++   N KL SSNA AVDSSS+FP+RGN+YPDGLYFTY++VGNPPRPYYLD+DT SD
Sbjct: 174 IVPNR---NYKLASSNAAAVDSSSVFPVRGNVYPDGLYFTYILVGNPPRPYYLDIDTASD 230

Query: 225 LTWIQCDAPCSSCAKGANPLYKPRMGNILPYKDSLCMEIQRNHKPGYCETCQQCDYEIEY 284
           LTWIQCDAPC+SCAKGAN LYKPR  NI+  KDSLC+E+ RN K GYCETCQQCDYEIEY
Sbjct: 231 LTWIQCDAPCTSCAKGANALYKPRRDNIVTPKDSLCVELHRNQKAGYCETCQQCDYEIEY 290

Query: 285 ADHSSSMGVLARDELHLTIENGSLTKPNVVFGCAYDQQGLLLNTLVKTDGILGLSRAKVS 344
           ADHSSSMGVLARDELHLT+ NGS T     FGCAYDQQGLLLNTLVKTDGILGLS+AKVS
Sbjct: 291 ADHSSSMGVLARDELHLTMANGSSTNLKFNFGCAYDQQGLLLNTLVKTDGILGLSKAKVS 350

Query: 345 LPSQLASQGIIKNVVGHCLTTNAGGGGYMFLGHDLVPSWGMAWVPMLDSPFMELYHTEIL 404
           LPSQLA++GII NVVGHCL  +  GGGYMFLG D VP WGM+WVPMLDSP ++ Y T+I+
Sbjct: 351 LPSQLANRGIINNVVGHCLANDVVGGGYMFLGDDFVPRWGMSWVPMLDSPSIDSYQTQIM 410

Query: 405 KINYGSSPLNLGARNSQVGWALFDTGSSYTYFTKQAYSELIASLKEVSSDGLVLDASDPT 464
           K+NYGS PL+LG +  +V   +FD+GSSYTYFTK+AYSEL+ASLK+VS + L+ D SDPT
Sbjct: 411 KLNYGSGPLSLGGQERRVRRIVFDSGSSYTYFTKEAYSELVASLKQVSGEALIQDTSDPT 470

Query: 465 LPVCWRAKFPIRSIVDVKQFFKTLTLHFGSKWQIVSTKFHISPEGYLVISKKGNICLGIL 524
           LP CWRAKFPIRS++DVKQ+FKTLTL FGSKW I+STKF I PEGYL+IS KGN+CLGIL
Sbjct: 471 LPFCWRAKFPIRSVIDVKQYFKTLTLQFGSKWWIISTKFRIPPEGYLIISNKGNVCLGIL 530

Query: 525 DGSEVHNGSTIILGDISLRGQLVVYDNVNKRIGWAKSHCMNPGRFKSLPFLEG 577
           DGS+VH+GS+IILGDISLRGQL++YDNVN +IGW +S C+ P  F +LPF +G
Sbjct: 531 DGSDVHDGSSIILGDISLRGQLIIYDNVNNKIGWTQSDCIKPKTFSTLPFFQG 583

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224130234|ref|XP_002328687.1| predicted protein [Populus trichocarpa] gi|222838863|gb|EEE77214.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225455900|ref|XP_002275943.1| PREDICTED: aspartic proteinase Asp1-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|449439393|ref|XP_004137470.1| PREDICTED: aspartic proteinase Asp1-like [Cucumis sativus] gi|449486840|ref|XP_004157418.1| PREDICTED: aspartic proteinase Asp1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|297734190|emb|CBI15437.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356522749|ref|XP_003530008.1| PREDICTED: lysine-specific histone demethylase 1 homolog 1-like [Glycine max] Back     alignment and taxonomy information
>gi|356529585|ref|XP_003533370.1| PREDICTED: lysine-specific histone demethylase 1 homolog 1-like [Glycine max] Back     alignment and taxonomy information
>gi|297847186|ref|XP_002891474.1| aspartyl protease family protein [Arabidopsis lyrata subsp. lyrata] gi|297337316|gb|EFH67733.1| aspartyl protease family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|18402471|ref|NP_564539.1| aspartyl protease [Arabidopsis thaliana] gi|7770346|gb|AAF69716.1|AC016041_21 F27J15.15 [Arabidopsis thaliana] gi|13430540|gb|AAK25892.1|AF360182_1 unknown protein [Arabidopsis thaliana] gi|14532748|gb|AAK64075.1| unknown protein [Arabidopsis thaliana] gi|332194267|gb|AEE32388.1| aspartyl protease [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|242062640|ref|XP_002452609.1| hypothetical protein SORBIDRAFT_04g028990 [Sorghum bicolor] gi|241932440|gb|EES05585.1| hypothetical protein SORBIDRAFT_04g028990 [Sorghum bicolor] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query577
TAIR|locus:2028466583 AT1G49050 [Arabidopsis thalian 0.960 0.950 0.526 1.2e-154
TAIR|locus:2205861405 AT1G44130 [Arabidopsis thalian 0.627 0.893 0.435 2e-86
TAIR|locus:2204725466 AT1G77480 [Arabidopsis thalian 0.632 0.783 0.425 9.7e-80
TAIR|locus:2167776 631 AT5G43100 [Arabidopsis thalian 0.615 0.562 0.313 2.5e-39
TAIR|locus:2183617482 AT5G36260 [Arabidopsis thalian 0.611 0.732 0.320 1.3e-38
TAIR|locus:2172661493 AT5G22850 [Arabidopsis thalian 0.616 0.722 0.288 2.4e-37
TAIR|locus:2083098 632 AT3G50050 [Arabidopsis thalian 0.585 0.534 0.312 8.1e-37
TAIR|locus:2075512488 AT3G02740 [Arabidopsis thalian 0.604 0.715 0.298 2.7e-36
TAIR|locus:2040545512 AT2G36670 [Arabidopsis thalian 0.589 0.664 0.287 3.3e-33
TAIR|locus:2198753485 AT1G05840 [Arabidopsis thalian 0.622 0.740 0.287 7e-32
TAIR|locus:2028466 AT1G49050 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1508 (535.9 bits), Expect = 1.2e-154, P = 1.2e-154
 Identities = 303/575 (52%), Positives = 380/575 (66%)

Query:    16 VVIITLPPPNNPSLGKTITAYTLTDNXXXXXXXXXXXXXXXXXXXXXXXXXNSQFNFSLP 75
             VVIITLPP ++PS GKTI+A+TLTD+                          S+  FS  
Sbjct:    17 VVIITLPPSDDPSQGKTISAFTLTDHDYPLEIPPEDNPNPSFQPDPLHRNQQSRLLFS-- 74

Query:    76 MLFPGLPRKXXXXXXXXXXXXXXYGSVFSYTLQ------DRYKSNNDDENKE--SFVFPL 127
              L    PR               Y SVF  ++Q      D    ++DD  +E  SFVFP+
Sbjct:    75 DLSMNSPRLVLGLLGISLLAVAFYASVFPNSVQMFRVSPDERNRDDDDNLRETASFVFPV 134

Query:   128 YHKFGIREVSQRDAEFKLGRFVDLDGESVVASVNDGIIRPHKSKINKKLXXXXXXXXXXX 187
             YHK   RE  +R  E  LG    L+ E+ V S++  ++ P   K+N  L           
Sbjct:   135 YHKLRAREFHERILEEDLG----LENENFVESMDLELVNP--VKVNDVLSTSAGSIDSST 188

Query:   188 XIFPLRGNIYPDGLYFTYMIVGNPP--RPYYLDMDTGSDLTWIQCDAPCSSCAKGANPLY 245
              IFP+ GN+YPDGLY+T ++VG P   + Y+LD+DTGS+LTWIQCDAPC+SCAKGAN LY
Sbjct:   189 TIFPVGGNVYPDGLYYTRILVGKPEDGQYYHLDIDTGSELTWIQCDAPCTSCAKGANQLY 248

Query:   246 KPRMGNILPYKDSLCMEIQRNHKPGYCETCQQCDYEIEYADHSSSMGVLARDELHLTIEN 305
             KPR  N++   ++ C+E+QRN    +CE C QCDYEIEYADHS SMGVL +D+ HL + N
Sbjct:   249 KPRKDNLVRSSEAFCVEVQRNQLTEHCENCHQCDYEIEYADHSYSMGVLTKDKFHLKLHN 308

Query:   306 GSLTKPNVVFGCAYDQQGLLLNTLVKTDGILGLSRAKVSLPSQLASQGIIKNVVGHCLTT 365
             GSL + ++VFGC YDQQGLLLNTL+KTDGILGLSRAK+SLPSQLAS+GII NVVGHCL +
Sbjct:   309 GSLAESDIVFGCGYDQQGLLLNTLLKTDGILGLSRAKISLPSQLASRGIISNVVGHCLAS 368

Query:   366 NAGGGGYMFLGHDLVPSWGMAWVPMLDSPFMELYHTEILKINYGSSPLNLGARNSQVGWA 425
             +  G GY+F+G DLVPS GM WVPML    ++ Y  ++ K++YG   L+L   N +VG  
Sbjct:   369 DLNGEGYIFMGSDLVPSHGMTWVPMLHDSRLDAYQMQVTKMSYGQGMLSLDGENGRVGKV 428

Query:   426 LFDTGSSYTYFTKQAYSELIASLKEVSSDGLVLDASDPTLPVCWRAK--FPIRSIVDVKQ 483
             LFDTGSSYTYF  QAYS+L+ SL+EVS   L  D SD TLP+CWRAK  FP  S+ DVK+
Sbjct:   429 LFDTGSSYTYFPNQAYSQLVTSLQEVSGLELTRDDSDETLPICWRAKTNFPFSSLSDVKK 488

Query:   484 FFKTLTLHFGSKWQIVSTKFHISPEGYLVISKKGNICLGILDGSEVHNGSTIILGDISLR 543
             FF+ +TL  GSKW I+S K  I PE YL+IS KGN+CLGILDGS VH+GSTIILGDIS+R
Sbjct:   489 FFRPITLQIGSKWLIISRKLLIQPEDYLIISNKGNVCLGILDGSSVHDGSTIILGDISMR 548

Query:   544 GQLVVYDNVNKRIGWAKSHCMNPGRFK-SLPFLEG 577
             G L+VYDNV +RIGW KS C+ P     ++PF +G
Sbjct:   549 GHLIVYDNVKRRIGWMKSDCVRPREIDHNVPFFQG 583
GO:0004190 "aspartic-type endopeptidase activity" evidence=IEA
GO:0005576 "extracellular region" evidence=ISM
GO:0006508 "proteolysis" evidence=IEA;ISS
GO:0006499 "N-terminal protein myristoylation" evidence=RCA
TAIR|locus:2205861 AT1G44130 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2204725 AT1G77480 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2167776 AT5G43100 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2183617 AT5G36260 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2172661 AT5G22850 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2083098 AT3G50050 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2075512 AT3G02740 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2040545 AT2G36670 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2198753 AT1G05840 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.4.23.25LOW CONFIDENCE prediction!
3rd Layer3.4.230.691
3rd Layer3.4.23.23LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query577
cd05475273 cd05475, nucellin_like, Nucellins, plant aspartic 1e-133
cd05476265 cd05476, pepsin_A_like_plant, Chroloplast Nucleoid 6e-49
cd05472299 cd05472, cnd41_like, Chloroplast Nucleoids DNA-bin 4e-44
cd05471283 cd05471, pepsin_like, Pepsin-like aspartic proteas 7e-40
PLN03146431 PLN03146, PLN03146, aspartyl protease family prote 7e-24
pfam00026316 pfam00026, Asp, Eukaryotic aspartyl protease 7e-20
cd06096326 cd06096, Plasmepsin_5, Plasmepsins are a class of 4e-17
cd05470109 cd05470, pepsin_retropepsin_like, Cellular and ret 5e-17
cd05489362 cd05489, xylanase_inhibitor_I_like, TAXI-I inhibit 2e-12
cd05474295 cd05474, SAP_like, SAPs, pepsin-like proteinases s 6e-09
cd05488320 cd05488, Proteinase_A_fungi, Fungal Proteinase A , 4e-08
cd05477318 cd05477, gastricsin, Gastricsins, asparate proteas 8e-05
cd05490325 cd05490, Cathepsin_D2, Cathepsin_D2, pepsin family 9e-05
cd06097278 cd06097, Aspergillopepsin_like, Aspergillopepsin_l 3e-04
cd05478317 cd05478, pepsin_A, Pepsin A, aspartic protease pro 0.001
>gnl|CDD|133142 cd05475, nucellin_like, Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation Back     alignment and domain information 
 Score =  389 bits (1001), Expect = e-133
 Identities = 159/364 (43%), Positives = 197/364 (54%), Gaps = 91/364 (25%)

Query: 200 GLYFTYMIVGNPPRPYYLDMDTGSDLTWIQCDAPCSSCAKGANPLYKPRMGNILPYKDSL 259
           G Y+  + +GNPP+PY+LD+DTGSDLTW+QCDAPC+ C                      
Sbjct: 1   GYYYVTINIGNPPKPYFLDIDTGSDLTWLQCDAPCTGC---------------------- 38

Query: 260 CMEIQRNHKPGYCETCQQCDYEIEYADHSSSMGVLARDELHLTIENGSLTKPNVVFGCAY 319
                            QCDYEIEYAD  SSMGVL  D   L + NGS  KP + FGC Y
Sbjct: 39  -----------------QCDYEIEYADGGSSMGVLVTDIFSLKLTNGSRAKPRIAFGCGY 81

Query: 320 DQQGLLLNTLVKTDGILGLSRAKVSLPSQLASQGIIKNVVGHCLTTNAGGGGYMFLGHDL 379
           DQQG LLN    TDGILGL R K+SLPSQLASQGIIKNV+GHCL++N  GGG++F G DL
Sbjct: 82  DQQGPLLNPPPPTDGILGLGRGKISLPSQLASQGIIKNVIGHCLSSN--GGGFLFFGDDL 139

Query: 380 VPSWGMAWVPMLDSPFMELYHTEILKINYGSSPLNLGARNSQVGWALFDTGSSYTYFTKQ 439
           VPS G+ W PM      + Y      + +   P        +    +FD+GSSYTYF  Q
Sbjct: 140 VPSSGVTWTPMRRESQKKHYSPGPASLLFNGQP-----TGGKGLEVVFDSGSSYTYFNAQ 194

Query: 440 AYSELIASLKEVSSDGLVLDASDPTLPVCWRAKFPIRSIVDVKQFFKTLTLHFGSKWQIV 499
           AY                                           FK LTL FG  W+  
Sbjct: 195 AY-------------------------------------------FKPLTLKFGKGWRT- 210

Query: 500 STKFHISPEGYLVISKKGNICLGILDGSEVHNGSTIILGDISLRGQLVVYDNVNKRIGWA 559
                I PE YL+IS+KGN+CLGIL+GSE+  G+T I+GDIS++G +V+YDN  ++IGW 
Sbjct: 211 -RLLEIPPENYLIISEKGNVCLGILNGSEIGLGNTNIIGDISMQGLMVIYDNEKQQIGWV 269

Query: 560 KSHC 563
           +S C
Sbjct: 270 RSDC 273

Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. This degradation is a characteristic of programmed cell death. Nucellins are plant aspartic proteases specifically expressed in nucellar cells during degradation. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region, and two other regions nearly identical to two regions of plant aspartic proteases. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. Although the three-dimensional structures of the two lobes are very similar, the amino acid sequences are more divergent, except for the conserved catalytic site motif. Length = 273
>gnl|CDD|133143 cd05476, pepsin_A_like_plant, Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants Back     alignment and domain information
>gnl|CDD|133139 cd05472, cnd41_like, Chloroplast Nucleoids DNA-binding Protease, catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase Back     alignment and domain information
>gnl|CDD|133138 cd05471, pepsin_like, Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH Back     alignment and domain information
>gnl|CDD|178691 PLN03146, PLN03146, aspartyl protease family protein; Provisional Back     alignment and domain information
>gnl|CDD|215663 pfam00026, Asp, Eukaryotic aspartyl protease Back     alignment and domain information
>gnl|CDD|133160 cd06096, Plasmepsin_5, Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite Back     alignment and domain information
>gnl|CDD|133137 cd05470, pepsin_retropepsin_like, Cellular and retroviral pepsin-like aspartate proteases Back     alignment and domain information
>gnl|CDD|133156 cd05489, xylanase_inhibitor_I_like, TAXI-I inhibits degradation of xylan in the cell wall Back     alignment and domain information
>gnl|CDD|133141 cd05474, SAP_like, SAPs, pepsin-like proteinases secreted from pathogens to degrade host proteins Back     alignment and domain information
>gnl|CDD|133155 cd05488, Proteinase_A_fungi, Fungal Proteinase A , aspartic proteinase superfamily Back     alignment and domain information
>gnl|CDD|133144 cd05477, gastricsin, Gastricsins, asparate proteases produced in gastric mucosa Back     alignment and domain information
>gnl|CDD|133157 cd05490, Cathepsin_D2, Cathepsin_D2, pepsin family of proteinases Back     alignment and domain information
>gnl|CDD|133161 cd06097, Aspergillopepsin_like, Aspergillopepsin_like, aspartic proteases of fungal origin Back     alignment and domain information
>gnl|CDD|133145 cd05478, pepsin_A, Pepsin A, aspartic protease produced in gastric mucosa of mammals Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 577
PLN03146431 aspartyl protease family protein; Provisional 100.0
PTZ00165482 aspartyl protease; Provisional 100.0
cd05478317 pepsin_A Pepsin A, aspartic protease produced in g 100.0
KOG1339398 consensus Aspartyl protease [Posttranslational mod 100.0
cd05490325 Cathepsin_D2 Cathepsin_D2, pepsin family of protei 100.0
cd05486316 Cathespin_E Cathepsin E, non-lysosomal aspartic pr 100.0
cd05472299 cnd41_like Chloroplast Nucleoids DNA-binding Prote 100.0
cd05477318 gastricsin Gastricsins, asparate proteases produce 100.0
cd05475273 nucellin_like Nucellins, plant aspartic proteases 100.0
cd06096326 Plasmepsin_5 Plasmepsins are a class of aspartic p 100.0
cd05488320 Proteinase_A_fungi Fungal Proteinase A , aspartic 100.0
cd05487326 renin_like Renin stimulates production of angioten 100.0
cd06098317 phytepsin Phytepsin, a plant homolog of mammalian 100.0
cd05485329 Cathepsin_D_like Cathepsin_D_like, pepsin family o 100.0
PTZ00147453 plasmepsin-1; Provisional 100.0
PTZ00013450 plasmepsin 4 (PM4); Provisional 100.0
cd05473364 beta_secretase_like Beta-secretase, aspartic-acid 100.0
cd05489362 xylanase_inhibitor_I_like TAXI-I inhibits degradat 100.0
cd05476265 pepsin_A_like_plant Chroloplast Nucleoids DNA-bind 100.0
cd06097278 Aspergillopepsin_like Aspergillopepsin_like, aspar 100.0
PF00026317 Asp: Eukaryotic aspartyl protease The Prosite entr 100.0
cd05474295 SAP_like SAPs, pepsin-like proteinases secreted fr 100.0
cd05471283 pepsin_like Pepsin-like aspartic proteases, biloba 100.0
PF14543164 TAXi_N: Xylanase inhibitor N-terminal; PDB: 3HD8_A 99.95
PF14541161 TAXi_C: Xylanase inhibitor C-terminal; PDB: 3AUP_D 99.9
cd05470109 pepsin_retropepsin_like Cellular and retroviral pe 99.86
cd0548396 retropepsin_like_bacteria Bacterial aspartate prot 97.95
TIGR02281121 clan_AA_DTGA clan AA aspartic protease, TIGR02281 96.47
PF1365090 Asp_protease_2: Aspartyl protease 95.17
cd05479124 RP_DDI RP_DDI; retropepsin-like domain of DNA dama 92.37
PF11925370 DUF3443: Protein of unknown function (DUF3443); In 91.38
cd05479124 RP_DDI RP_DDI; retropepsin-like domain of DNA dama 87.53
cd0548491 retropepsin_like_LTR_2 Retropepsins_like_LTR, peps 87.51
cd0609586 RP_RTVL_H_like Retropepsin of the RTVL_H family of 81.66
PF1397572 gag-asp_proteas: gag-polyprotein putative aspartyl 81.46
>PLN03146 aspartyl protease family protein; Provisional Back     alignment and domain information 
Probab=100.00  E-value=2.4e-58  Score=497.85  Aligned_cols=339  Identities=27%  Similarity=0.523  Sum_probs=277.7

Q ss_pred             CCceEEEEEEecCCCceEEEEEECCCCceeEecCCCCCCCCCCCCCcCCCCCCcc---ccCCCcchhhhhcCCCCCCCCC
Q 008104          198 PDGLYFTYMIVGNPPRPYYLDMDTGSDLTWIQCDAPCSSCAKGANPLYKPRMGNI---LPYKDSLCMEIQRNHKPGYCET  274 (577)
Q Consensus       198 ~~~~Y~~~I~IGTPpQ~~~v~vDTGSs~tWV~~~~~C~~C~~~~~~~ydps~Sst---v~c~~~~c~~~~~~~~~~~c~~  274 (577)
                      .++.|+++|.||||||++.|+|||||+++||+|. +|..|..+.++.|||++|+|   ++|.++.|......   ..|..
T Consensus        81 ~~~~Y~v~i~iGTPpq~~~vi~DTGS~l~Wv~C~-~C~~C~~~~~~~fdps~SST~~~~~C~s~~C~~~~~~---~~c~~  156 (431)
T PLN03146         81 NGGEYLMNISIGTPPVPILAIADTGSDLIWTQCK-PCDDCYKQVSPLFDPKKSSTYKDVSCDSSQCQALGNQ---ASCSD  156 (431)
T ss_pred             CCccEEEEEEcCCCCceEEEEECCCCCcceEcCC-CCcccccCCCCcccCCCCCCCcccCCCCcccccCCCC---CCCCC
Confidence            4679999999999999999999999999999998 99999988899999999987   99999999765432   45766


Q ss_pred             CCCceeEEEeCCCCeEEEEEEEEEEEEeecCC-CccccceEEEEEEccCccccccCCccceEEecCCCCCCChHHHHhcC
Q 008104          275 CQQCDYEIEYADHSSSMGVLARDELHLTIENG-SLTKPNVVFGCAYDQQGLLLNTLVKTDGILGLSRAKVSLPSQLASQG  353 (577)
Q Consensus       275 ~~~~~~~i~YgdGs~~~G~~~~D~v~l~~~~g-~~~~~~~~FG~a~~~~g~~~~~~~~~dGIlGLg~~~~S~~~qL~~~g  353 (577)
                      .+.|.|.+.|+||+.+.|.+++|+|+|+...+ ...++++.|||++...+.+.   ...+||||||++.+|+++||... 
T Consensus       157 ~~~c~y~i~Ygdgs~~~G~l~~Dtltlg~~~~~~~~v~~~~FGc~~~~~g~f~---~~~~GilGLG~~~~Sl~sql~~~-  232 (431)
T PLN03146        157 ENTCTYSYSYGDGSFTKGNLAVETLTIGSTSGRPVSFPGIVFGCGHNNGGTFD---EKGSGIVGLGGGPLSLISQLGSS-  232 (431)
T ss_pred             CCCCeeEEEeCCCCceeeEEEEEEEEeccCCCCcceeCCEEEeCCCCCCCCcc---CCCceeEecCCCCccHHHHhhHh-
Confidence            66799999999998889999999999943211 14688999999998876542   35899999999999999999764 


Q ss_pred             CccceEEEEeecC---CCCCeeEEeCCCCCCCC-CceEEeCccCCCCcceEEEEeEEeeCCcceecCccc---CCCccEE
Q 008104          354 IIKNVVGHCLTTN---AGGGGYMFLGHDLVPSW-GMAWVPMLDSPFMELYHTEILKINYGSSPLNLGARN---SQVGWAL  426 (577)
Q Consensus       354 ~i~~~FSl~L~~~---~~~~G~l~fGd~~~~~g-~l~~~pl~~~~~~~~w~V~l~~I~vgg~~l~i~~~~---~~~~~aI  426 (577)
                       +.++||+||.+.   ....|.|+||+..++.+ ++.|+|++......+|.|.|++|+||++.+.++...   .+...+|
T Consensus       233 -~~~~FSycL~~~~~~~~~~g~l~fG~~~~~~~~~~~~tPl~~~~~~~~y~V~L~gIsVgg~~l~~~~~~~~~~~~g~~i  311 (431)
T PLN03146        233 -IGGKFSYCLVPLSSDSNGTSKINFGTNAIVSGSGVVSTPLVSKDPDTFYYLTLEAISVGSKKLPYTGSSKNGVEEGNII  311 (431)
T ss_pred             -hCCcEEEECCCCCCCCCCcceEEeCCccccCCCCceEcccccCCCCCeEEEeEEEEEECCEECcCCccccccCCCCcEE
Confidence             556999999752   24589999998655544 599999985432369999999999999988775432   1235799


Q ss_pred             EecccccccccHHHHHHHHHHH-HhhcCCCceecCCCCCCccccccCCCccccccccccceeEEEEEcccCceeeEEEEE
Q 008104          427 FDTGSSYTYFTKQAYSELIASL-KEVSSDGLVLDASDPTLPVCWRAKFPIRSIVDVKQFFKTLTLHFGSKWQIVSTKFHI  505 (577)
Q Consensus       427 iDSGTt~i~lP~~~~~~l~~~i-~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~P~l~f~F~gg~~~~~~~~~l  505 (577)
                      |||||++++||+++|+++.+++ +++.....  ......+..|+....      .  ..+|.|+|+|+|      +.+.|
T Consensus       312 iDSGTt~t~Lp~~~y~~l~~~~~~~~~~~~~--~~~~~~~~~C~~~~~------~--~~~P~i~~~F~G------a~~~l  375 (431)
T PLN03146        312 IDSGTTLTLLPSDFYSELESAVEEAIGGERV--SDPQGLLSLCYSSTS------D--IKLPIITAHFTG------ADVKL  375 (431)
T ss_pred             EeCCccceecCHHHHHHHHHHHHHHhccccC--CCCCCCCCccccCCC------C--CCCCeEEEEECC------Ceeec
Confidence            9999999999999999999999 76653211  112223556987421      1  248999999996      89999


Q ss_pred             CCCccEEEeCCCceEEEEEcCCCCCCCCceEeChhhhccEEEEEECCCCEEEEEecCCCCC
Q 008104          506 SPEGYLVISKKGNICLGILDGSEVHNGSTIILGDISLRGQLVVYDNVNKRIGWAKSHCMNP  566 (577)
Q Consensus       506 ~p~~yl~~~~~g~~Cl~i~~~~~~~~~~~~ILG~~FLr~~yvVFD~~~~rIGfA~~~C~~~  566 (577)
                      ++++|+++..++.+|+++....     +.||||+.|||++|+|||++++|||||+.+|++.
T Consensus       376 ~~~~~~~~~~~~~~Cl~~~~~~-----~~~IlG~~~q~~~~vvyDl~~~~igFa~~~C~~~  431 (431)
T PLN03146        376 QPLNTFVKVSEDLVCFAMIPTS-----SIAIFGNLAQMNFLVGYDLESKTVSFKPTDCTKM  431 (431)
T ss_pred             CcceeEEEcCCCcEEEEEecCC-----CceEECeeeEeeEEEEEECCCCEEeeecCCcCcC
Confidence            9999999877778999987642     4599999999999999999999999999999863

>PTZ00165 aspartyl protease; Provisional Back     alignment and domain information
>cd05478 pepsin_A Pepsin A, aspartic protease produced in gastric mucosa of mammals Back     alignment and domain information
>KOG1339 consensus Aspartyl protease [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd05490 Cathepsin_D2 Cathepsin_D2, pepsin family of proteinases Back     alignment and domain information
>cd05486 Cathespin_E Cathepsin E, non-lysosomal aspartic protease Back     alignment and domain information
>cd05472 cnd41_like Chloroplast Nucleoids DNA-binding Protease, catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase Back     alignment and domain information
>cd05477 gastricsin Gastricsins, asparate proteases produced in gastric mucosa Back     alignment and domain information
>cd05475 nucellin_like Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation Back     alignment and domain information
>cd06096 Plasmepsin_5 Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite Back     alignment and domain information
>cd05488 Proteinase_A_fungi Fungal Proteinase A , aspartic proteinase superfamily Back     alignment and domain information
>cd05487 renin_like Renin stimulates production of angiotensin and thus affects blood pressure Back     alignment and domain information
>cd06098 phytepsin Phytepsin, a plant homolog of mammalian lysosomal pepsins Back     alignment and domain information
>cd05485 Cathepsin_D_like Cathepsin_D_like, pepsin family of proteinases Back     alignment and domain information
>PTZ00147 plasmepsin-1; Provisional Back     alignment and domain information
>PTZ00013 plasmepsin 4 (PM4); Provisional Back     alignment and domain information
>cd05473 beta_secretase_like Beta-secretase, aspartic-acid protease important in the pathogenesis of Alzheimer's disease Back     alignment and domain information
>cd05489 xylanase_inhibitor_I_like TAXI-I inhibits degradation of xylan in the cell wall Back     alignment and domain information
>cd05476 pepsin_A_like_plant Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants Back     alignment and domain information
>cd06097 Aspergillopepsin_like Aspergillopepsin_like, aspartic proteases of fungal origin Back     alignment and domain information
>PF00026 Asp: Eukaryotic aspartyl protease The Prosite entry also includes Pfam:PF00077 Back     alignment and domain information
>cd05474 SAP_like SAPs, pepsin-like proteinases secreted from pathogens to degrade host proteins Back     alignment and domain information
>cd05471 pepsin_like Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH Back     alignment and domain information
>PF14543 TAXi_N: Xylanase inhibitor N-terminal; PDB: 3HD8_A 3VLB_A 3VLA_A 3AUP_D 1T6G_A 1T6E_X 2B42_A Back     alignment and domain information
>PF14541 TAXi_C: Xylanase inhibitor C-terminal; PDB: 3AUP_D 3HD8_A 1T6G_A 1T6E_X 2B42_A 3VLB_A 3VLA_A Back     alignment and domain information
>cd05470 pepsin_retropepsin_like Cellular and retroviral pepsin-like aspartate proteases Back     alignment and domain information
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family Back     alignment and domain information
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family Back     alignment and domain information
>PF13650 Asp_protease_2: Aspartyl protease Back     alignment and domain information
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein Back     alignment and domain information
>PF11925 DUF3443: Protein of unknown function (DUF3443); InterPro: IPR021847 This family of proteins are functionally uncharacterised Back     alignment and domain information
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein Back     alignment and domain information
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases Back     alignment and domain information
>cd06095 RP_RTVL_H_like Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements Back     alignment and domain information
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query577
3vlb_A413 Crystal Structure Of Xeg-Edgp Length = 413 3e-09
3vla_A413 Crystal Structure Of Edgp Length = 413 3e-09
2ewy_A383 Crystal Structure Of Human Bace2 In Complex With A 3e-07
3aup_A403 Crystal Structure Of Basic 7s Globulin From Soybean 7e-07
1htr_B329 Crystal And Molecular Structures Of Human Progastri 5e-06
3bra_A409 Bace-1 Complexed With Compound 1 Length = 409 8e-06
2zjk_A405 Crystal Structure Of The Human Bace1 Catalytic Doma 9e-06
1t6e_X381 Crystal Structure Of The Triticum Aestivum Xylanase 9e-06
3psg_A370 The High Resolution Crystal Structure Of Porcine Pe 2e-05
2psg_A370 Refined Structure Of Porcine Pepsinogen At 1.8 Angs 2e-05
3hvg_A411 Structure Of Bace (Beta Secretase) In Complex With 3e-05
3l58_A414 Structure Of Bace Bound To Sch589432 Length = 414 3e-05
2qu2_A415 Bace1 With Compound 1 Length = 415 3e-05
2zhr_A411 Crystal Structure Of Bace1 In Complex With Om99-2 A 3e-05
3tpr_A433 Crystal Structure Of Bace1 Complexed With An Inhibi 3e-05
3vv6_A416 Crystal Structure Of Beta Secetase In Complex With 3e-05
3ckp_A412 Crystal Structure Of Bace-1 In Complex With Inhibit 3e-05
1w50_A411 Apo Structure Of Bace (beta Secretase) Length = 411 3e-05
5pep_A326 X-Ray Analyses Of Aspartic Proteases. Ii. Three-Dim 3e-05
3ixk_A405 Potent Beta-Secretase 1 Inhibitor Length = 405 3e-05
2zjn_A405 Crystal Structure Of The Human Bace1 Catalytic Doma 3e-05
1ym4_A408 Crystal Structure Of Human Beta Secretase Complexed 3e-05
3dm6_A406 Beta-Secretase 1 Complexed With Statine-Based Inhib 3e-05
2of0_A402 X-Ray Crystal Structure Of Beta Secretase Complexed 4e-05
1ym2_A402 Crystal Structure Of Human Beta Secretase Complexed 4e-05
1psa_A326 Structure Of A Pepsin(Slash)renin Inhibitor Complex 4e-05
3cib_A390 Structure Of Bace Bound To Sch727596 Length = 390 4e-05
4ewo_A386 Design And Synthesis Of Potent Hydroxyethylamine (H 4e-05
2hm1_A406 Crystal Structure Of Human Beta-Secretase (Bace) In 5e-05
2fdp_A388 Crystal Structure Of Beta-Secretase Complexed With 5e-05
3r1g_B402 Structure Basis Of Allosteric Inhibition Of Bace1 B 5e-05
3pep_A326 Revised 2.3 Angstroms Structure Of Porcine Pepsin. 5e-05
3udh_A404 Crystal Structure Of Bace With Compound 1 Length = 5e-05
1sgz_A389 Crystal Structure Of Unbound Beta-Secretase Catalyt 5e-05
1fkn_A391 Structure Of Beta-Secretase Complexed With Inhibito 5e-05
1f34_A326 Crystal Structure Of Ascaris Pepsin Inhibitor-3 Bou 5e-05
3kmx_A395 Structure Of Bace Bound To Sch346572 Length = 395 5e-05
2wjo_A412 Human Bace (Beta Secretase) In Complex With Cyclohe 5e-05
4b1d_A388 New Aminoimidazoles As Bace-1 Inhibitors: From Rati 5e-05
4dpf_A391 Bace-1 In Complex With A Hea-Macrocyclic Type Inhib 5e-05
2qk5_A395 Structure Of Bace1 Bound To Sch626485 Length = 395 5e-05
2vie_A392 Human Bace-1 In Complex With N-((1s,2r)-1-Benzyl-2- 5e-05
3u6a_A390 Rational Design And Synthesis Of Aminopiperazinones 6e-05
4pep_A326 The Molecular And Crystal Structures Of Monoclinic 6e-05
2q11_A388 Structure Of Bace Complexed To Compound 1 Length = 6e-05
2zji_A405 Crystal Structure Of The Human Bace1 Catalytic Doma 6e-05
3qi1_A408 Design And Synthesis Of Hydroxyethylamine (Hea) Bac 6e-05
2q15_A385 Structure Of Bace Complexed To Compound 3a Length = 6e-05
3lpi_A455 Structure Of Bace Bound To Sch745132 Length = 455 6e-05
3exo_A413 Crystal Structure Of Bace1 Bound To Inhibitor Lengt 6e-05
3tpj_A433 Apo Structure Of Bace1 Length = 433 6e-05
3hd8_A389 Crystal Structure Of The Triticum Aestivum Xylanase 6e-05
1tqf_A405 Crystal Structure Of Human Beta Secretase Complexed 7e-05
2va5_A455 X-Ray Crystal Structure Of Beta Secretase Complexed 7e-05
2qzl_A411 Crystal Structure Of Human Beta Secretase Complexed 7e-05
2hiz_A455 Crystal Structure Of Human Beta-Secretase (Bace) In 8e-05
2zjh_A405 Crystal Structure Of The Human Bace1 Catalytic Doma 1e-04
2zjj_A405 Crystal Structure Of The Human Bace1 Catalytic Doma 1e-04
4aa9_A320 Camel Chymosin At 1.6a Resolution Length = 320 1e-04
3apr_E325 Binding Of A Reduced Peptide Inhibitor To The Aspar 2e-04
2b42_A381 Crystal Structure Of The Triticum Xylanse Inhibitor 3e-04
1flh_A326 Crystal Structure Of Human Uropepsin At 2.45 A Reso 5e-04
4b1c_A375 New Aminoimidazoles As Bace-1 Inhibitors: From Rati 5e-04
1am5_A324 The Crystal Structure And Proposed Amino Acid Seque 7e-04
>pdb|3VLB|A Chain A, Crystal Structure Of Xeg-Edgp Length = 413 Back     alignment and structure 
Iteration: 1

 Score = 60.5 bits (145), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 87/403 (21%), Positives = 153/403 (37%), Gaps = 55/403 (13%)
Query: 202 YFTYMIVGNPPRPYYLDMDTGSDLTWIQCDAPCSSCAKGANPLYKP---RMGNILPYKDS 258
           Y T +    P     L +D G    W+ CD          +  Y+P   R          
Sbjct: 22  YVTTINQRTPLVSENLVVDLGGRFLWVDCDQ------NYVSSTYRPVRCRTSQCSLSGSI 75
Query: 259 LCMEIQRNHKPGYCETCQQCDYEIEYADHSSSMGVLARDELHLTIENGS-----LTKPNV 313
            C +     +PG C       +      ++++ G +A D + +   +GS     +T P  
Sbjct: 76  ACGDCFNGPRPG-CNNNTCGVFPENPVINTATGGEVAEDVVSVESTDGSSSGRVVTVPRF 134
Query: 314 VFGCAYDQQGLLLNTLVKTDGILGLSRAKVSLPSQLASQGIIKNVVGHCLTTNAGGGGYM 373
           +F CA     LL N      G+ GL R +++LPSQ AS    K     CL+ +      +
Sbjct: 135 IFSCA--PTSLLQNLASGVVGMAGLGRTRIALPSQFASAFSFKRKFAMCLSGSTSSNSVI 192
Query: 374 FLGHD--------LVPSWGMAWVPMLDSPF------------MELY-HTEILKINYGSSP 412
             G+D        +V    + + P+L +P             +E +   + +KIN     
Sbjct: 193 IFGNDPYTFLPNIIVSDKTLTYTPLLTNPVSTSATSTQGEPSVEYFIGVKSIKINSKIVA 252
Query: 413 LN---LGARNSQVGWALFDTGSSYTYFTKQAYSELI-ASLKEVSSDGLVLDASDPTLPVC 468
           LN   L   ++ +G     T + YT      Y  +  A +KE ++  +   AS      C
Sbjct: 253 LNTSLLSISSAGLGGTKISTINPYTVLETSIYKAVTEAFIKESAARNITRVASVAPFGAC 312
Query: 469 WRAKFPIRSIVDVKQFFKTLTLHFGSKWQIVSTKFHISPEGYLVISKKGNICLGILDGSE 528
               F   +I+  +      ++      Q  S  + I+    +V      +CLG++DG  
Sbjct: 313 ----FSTDNILSTRLGPSVPSIDL--VLQSESVVWTITGSNSMVYINDNVVCLGVVDGGS 366
Query: 529 VHNGSTIILGDISLRGQLVVYDNVNKRIGW------AKSHCMN 565
            +  ++I++G   L   LV +D    R+G+      +++ C N
Sbjct: 367 -NLRTSIVIGGHQLEDNLVQFDLATSRVGFSGTLLGSRTTCAN 408
>pdb|3VLA|A Chain A, Crystal Structure Of Edgp Length = 413 Back     alignment and structure
>pdb|2EWY|A Chain A, Crystal Structure Of Human Bace2 In Complex With A Hydroxyethylenamine Transition-State Inhibitor Length = 383 Back     alignment and structure
>pdb|3AUP|A Chain A, Crystal Structure Of Basic 7s Globulin From Soybean Length = 403 Back     alignment and structure
>pdb|1HTR|B Chain B, Crystal And Molecular Structures Of Human Progastricsin At 1.62 Angstroms Resolution Length = 329 Back     alignment and structure
>pdb|3BRA|A Chain A, Bace-1 Complexed With Compound 1 Length = 409 Back     alignment and structure
>pdb|2ZJK|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In Complex With 4-(4-Fluoro-Benzyl)-Piperazine-2-Carboxylic Acid(3-Mercapto-Propyl)-Amide Length = 405 Back     alignment and structure
>pdb|1T6E|X Chain X, Crystal Structure Of The Triticum Aestivum Xylanase Inhibitor I Length = 381 Back     alignment and structure
>pdb|3PSG|A Chain A, The High Resolution Crystal Structure Of Porcine Pepsinogen Length = 370 Back     alignment and structure
>pdb|2PSG|A Chain A, Refined Structure Of Porcine Pepsinogen At 1.8 Angstroms Resolution Length = 370 Back     alignment and structure
>pdb|3HVG|A Chain A, Structure Of Bace (Beta Secretase) In Complex With Ev0 Length = 411 Back     alignment and structure
>pdb|3L58|A Chain A, Structure Of Bace Bound To Sch589432 Length = 414 Back     alignment and structure
>pdb|2QU2|A Chain A, Bace1 With Compound 1 Length = 415 Back     alignment and structure
>pdb|2ZHR|A Chain A, Crystal Structure Of Bace1 In Complex With Om99-2 At Ph 5.0 Length = 411 Back     alignment and structure
>pdb|3TPR|A Chain A, Crystal Structure Of Bace1 Complexed With An Inhibitor Length = 433 Back     alignment and structure
>pdb|3VV6|A Chain A, Crystal Structure Of Beta Secetase In Complex With 2-Amino-3-Methyl-6- ((1s, 2r)-2-Phenylcyclopropyl)pyrimidin-4(3h)-One Length = 416 Back     alignment and structure
>pdb|3CKP|A Chain A, Crystal Structure Of Bace-1 In Complex With Inhibitor Length = 412 Back     alignment and structure
>pdb|1W50|A Chain A, Apo Structure Of Bace (beta Secretase) Length = 411 Back     alignment and structure
>pdb|5PEP|A Chain A, X-Ray Analyses Of Aspartic Proteases. Ii. Three-Dimensional Structure Of The Hexagonal Crystal Form Of Porcine Pepsin At 2.3 Angstroms Resolution Length = 326 Back     alignment and structure
>pdb|3IXK|A Chain A, Potent Beta-Secretase 1 Inhibitor Length = 405 Back     alignment and structure
>pdb|2ZJN|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In Complex With N-[1-(5-Chloro-2-Isopropoxy-3-Methoxy-Benzyl)- Piperidin-4-Yl]-2-(2-Methyl-4-Sulfamoyl-Phenoxy)- Acetamide Length = 405 Back     alignment and structure
>pdb|1YM4|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With Nvp-Amk640 Length = 408 Back     alignment and structure
>pdb|3DM6|A Chain A, Beta-Secretase 1 Complexed With Statine-Based Inhibitor Length = 406 Back     alignment and structure
>pdb|2OF0|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With Compound 5 Length = 402 Back     alignment and structure
>pdb|1YM2|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With Nvp-Aur200 Length = 402 Back     alignment and structure
>pdb|1PSA|A Chain A, Structure Of A Pepsin(Slash)renin Inhibitor Complex Reveals A Novel Crystal Packing Induced By Minor Chemical Alterations In The Inhibitor Length = 326 Back     alignment and structure
>pdb|3CIB|A Chain A, Structure Of Bace Bound To Sch727596 Length = 390 Back     alignment and structure
>pdb|4EWO|A Chain A, Design And Synthesis Of Potent Hydroxyethylamine (Hea) Bace-1 Inhibitors Length = 386 Back     alignment and structure
>pdb|2HM1|A Chain A, Crystal Structure Of Human Beta-Secretase (Bace) In The Presence Of An Inhibitor (2) Length = 406 Back     alignment and structure
>pdb|2FDP|A Chain A, Crystal Structure Of Beta-Secretase Complexed With An Amino- Ethylene Inhibitor Length = 388 Back     alignment and structure
>pdb|3R1G|B Chain B, Structure Basis Of Allosteric Inhibition Of Bace1 By An Exosite- Binding Antibody Length = 402 Back     alignment and structure
>pdb|3PEP|A Chain A, Revised 2.3 Angstroms Structure Of Porcine Pepsin. Evidence For A Flexible Subdomain Length = 326 Back     alignment and structure
>pdb|3UDH|A Chain A, Crystal Structure Of Bace With Compound 1 Length = 404 Back     alignment and structure
>pdb|1SGZ|A Chain A, Crystal Structure Of Unbound Beta-Secretase Catalytic Domain. Length = 389 Back     alignment and structure
>pdb|1FKN|A Chain A, Structure Of Beta-Secretase Complexed With Inhibitor Length = 391 Back     alignment and structure
>pdb|1F34|A Chain A, Crystal Structure Of Ascaris Pepsin Inhibitor-3 Bound To Porcine Pepsin Length = 326 Back     alignment and structure
>pdb|3KMX|A Chain A, Structure Of Bace Bound To Sch346572 Length = 395 Back     alignment and structure
>pdb|2WJO|A Chain A, Human Bace (Beta Secretase) In Complex With Cyclohexanecarboxylic Acid (2-(2-Am Ino-6-Phenoxy-4h- Quinazolin-3-Yl)-2-Cyclohexyl-Ethyl)-Amide Length = 412 Back     alignment and structure
>pdb|4B1D|A Chain A, New Aminoimidazoles As Bace-1 Inhibitors: From Rational Design To Ab-Lowering In Brain Length = 388 Back     alignment and structure
>pdb|4DPF|A Chain A, Bace-1 In Complex With A Hea-Macrocyclic Type Inhibitor Length = 391 Back     alignment and structure
>pdb|2QK5|A Chain A, Structure Of Bace1 Bound To Sch626485 Length = 395 Back     alignment and structure
>pdb|2VIE|A Chain A, Human Bace-1 In Complex With N-((1s,2r)-1-Benzyl-2-Hydroxy- 3-((1,1, 5-Trimethylhexyl)amino)propyl)-3-(Ethylamino)-5-(2- Oxopyrrolidin-1-Yl)benzamide Length = 392 Back     alignment and structure
>pdb|3U6A|A Chain A, Rational Design And Synthesis Of Aminopiperazinones As Beta Secretase (Bace) Inhibitors Length = 390 Back     alignment and structure
>pdb|4PEP|A Chain A, The Molecular And Crystal Structures Of Monoclinic Porcine Pepsin Refined At 1.8 Angstroms Resolution Length = 326 Back     alignment and structure
>pdb|2Q11|A Chain A, Structure Of Bace Complexed To Compound 1 Length = 388 Back     alignment and structure
>pdb|2ZJI|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In Complex With N-[1-(2, 6-Dimethoxy-Benzyl)-Piperidin-4-Yl]-4-Mercapto- Butyramide Length = 405 Back     alignment and structure
>pdb|3QI1|A Chain A, Design And Synthesis Of Hydroxyethylamine (Hea) Bace-1 Inhibitors: Prime Side Chromane-Containing Inhibitors Length = 408 Back     alignment and structure
>pdb|2Q15|A Chain A, Structure Of Bace Complexed To Compound 3a Length = 385 Back     alignment and structure
>pdb|3LPI|A Chain A, Structure Of Bace Bound To Sch745132 Length = 455 Back     alignment and structure
>pdb|3EXO|A Chain A, Crystal Structure Of Bace1 Bound To Inhibitor Length = 413 Back     alignment and structure
>pdb|3TPJ|A Chain A, Apo Structure Of Bace1 Length = 433 Back     alignment and structure
>pdb|3HD8|A Chain A, Crystal Structure Of The Triticum Aestivum Xylanase Inhibitor-Iia In Complex With Bacillus Subtilis Xylanase Length = 389 Back     alignment and structure
>pdb|1TQF|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With Inhibitor Length = 405 Back     alignment and structure
>pdb|2VA5|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With Compound 8c Length = 455 Back     alignment and structure
>pdb|2QZL|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With Ixs Length = 411 Back     alignment and structure
>pdb|2HIZ|A Chain A, Crystal Structure Of Human Beta-Secretase (Bace) In The Presence Of An Inhibitor Length = 455 Back     alignment and structure
>pdb|2ZJH|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In Complex With N-(1-Benzyl-Piperidin-4-Yl)-4-Mercapto-Butyramide Length = 405 Back     alignment and structure
>pdb|2ZJJ|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In Complex With 4-(4-Fluoro-Benzyl)-Piperazine-2-Carboxylic Acid (2-Mercapto-Ethyl)- Amide Length = 405 Back     alignment and structure
>pdb|4AA9|A Chain A, Camel Chymosin At 1.6a Resolution Length = 320 Back     alignment and structure
>pdb|3APR|E Chain E, Binding Of A Reduced Peptide Inhibitor To The Aspartic Proteinase From Rhizopus Chinensis. Implications For A Mechanism Of Action Length = 325 Back     alignment and structure
>pdb|2B42|A Chain A, Crystal Structure Of The Triticum Xylanse Inhibitor-I In Complex With Bacillus Subtilis Xylanase Length = 381 Back     alignment and structure
>pdb|1FLH|A Chain A, Crystal Structure Of Human Uropepsin At 2.45 A Resolution Length = 326 Back     alignment and structure
>pdb|4B1C|A Chain A, New Aminoimidazoles As Bace-1 Inhibitors: From Rational Design To Ab-Lowering In Brain Length = 375 Back     alignment and structure
>pdb|1AM5|A Chain A, The Crystal Structure And Proposed Amino Acid Sequence Of A Pepsin From Atlantic Cod (Gadus Morhua) Length = 324 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query577
3vla_A413 EDGP; extracellular, inhibitor, plant protein; HET 7e-74
3aup_A403 SBG7S, BG, basic 7S globulin; pepsin-like fold, pl 1e-73
1t6e_X381 Xylanase inhibitor; two beta-barrel domain structu 6e-66
3lpj_A455 Beta-secretase 1; alzheimer'S, aspartyl protease, 7e-26
2qp8_A395 Beta-secretase 1; BACE1, protease, alternative spl 1e-24
2ewy_A383 Beta-secretase 2; BACE2, aspartic protease, hydrol 2e-24
1j71_A334 Candidapepsin, aspartic proteinase; candida tropic 2e-21
3pvk_A342 Candidapepsin-2; hydrolase; 1.27A {Candida albican 5e-20
2qzx_A342 Candidapepsin-5; aspartic proteinase, aspartyl pro 6e-20
3psg_A370 Pepsinogen; hydrolase(acid proteinase zymogen); 1. 9e-19
2bju_A453 Plasmepsin II; aspartic proteinase, drug design, m 1e-18
3fv3_A339 SAPP1P-secreted aspartic protease 1; secreted aspa 2e-18
3c9x_A329 Trichoderma reesei aspartic protease; aspartic pro 2e-18
1am5_A324 Pepsin, acid proteinase; aspartyl protease, hydrol 3e-18
3cms_A323 Chymosin B; hydrolase, acid proteinase; 2.00A {Bos 5e-18
1bxo_A323 Protein (penicillopepsin); hydrolase, phosphonate 8e-18
1tzs_A351 Cathepsin E; hydrolase, aspartic protease, activat 3e-17
1htr_B329 Gastricsin; aspartyl protease; 1.62A {Homo sapiens 4e-17
1mpp_A361 Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomu 4e-17
1ibq_A325 Aspergillopepsin; aspartic proteinase, hydrolase; 1e-16
3qvc_A451 Histo-aspartic protease; HAP, plasmepsin, zymogen, 2e-16
1miq_A375 Plasmepsin; aspartic proteinase zymogen, domain op 2e-16
2apr_A325 Rhizopuspepsin; hydrolase (aspartic proteinase); 1 2e-16
1izd_A323 Aspartic proteinase; sugar binding, acid protease, 3e-16
1wkr_A340 Polyporopepsin; hydrolase, hydrolase-hydrolase inh 4e-16
1oew_A329 Endothiapepsin; hydrolase, aspartic proteinase mec 6e-16
1dpj_A329 Proteinase A; proteinase A, hydrolase-hydrolase in 1e-15
1yg9_A330 Aspartic protease BLA G 2; allegren, hydrolase, al 4e-15
2x0b_A383 Renin; hydrolase-hormone complex, hydrolase hormon 9e-15
3k1w_A341 Renin; protease, alternative splicing, aspartyl pr 2e-14
1b5f_A239 Protein (cardosin A); hydrolase, aspartic proteina 2e-11
1qdm_A478 Prophytepsin; aspartic proteinases, saposin-like d 1e-09
1lya_B241 Cathepsin D; lysosomal aspartic protease; HET: NAG 5e-09
1b5f_B87 Protein (cardosin A); hydrolase, aspartic proteina 2e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-05
>3vla_A EDGP; extracellular, inhibitor, plant protein; HET: NAG; 0.95A {Daucus carota} PDB: 3vlb_A Length = 413 Back     alignment and structure
 Score =  240 bits (613), Expect = 7e-74
 Identities = 79/419 (18%), Positives = 148/419 (35%), Gaps = 44/419 (10%)

Query: 186 SSSIFPLRGNIYPDGLYFTYMIVGNPPRPYYLDMDTGSDLTWIQCDAPCSSCAKGANPLY 245
           S+ + P++ +      Y T +    P     L +D G    W+ CD    S         
Sbjct: 7   SALVVPVKKDA-STLQYVTTINQRTPLVSENLVVDLGGRFLWVDCDQNYVSSTYRPVRCR 65

Query: 246 KPRMGNILPYKDSLCMEIQRNHKPGYCETCQQCDYEIEYADHSSSMGVLARDELHLTIEN 305
             +           C +     +PG C       +      ++++ G +A D + +   +
Sbjct: 66  TSQC---SLSGSIACGDCFNGPRPG-CNNNTCGVFPENPVINTATGGEVAEDVVSVESTD 121

Query: 306 GS-----LTKPNVVFGCAYDQQGLLLNTLVKTDGILGLSRAKVSLPSQLASQGIIKNVVG 360
           GS     +T P  +F CA       L + V   G+ GL R +++LPSQ AS    K    
Sbjct: 122 GSSSGRVVTVPRFIFSCAPTSLLQNLASGV--VGMAGLGRTRIALPSQFASAFSFKRKFA 179

Query: 361 HCLTTNAGGGGYMFLG--------HDLVPSWGMAWVPMLDSPFMEL-----------YHT 401
            CL+ +      +  G        + +V    + + P+L +P               Y  
Sbjct: 180 MCLSGSTSSNSVIIFGNDPYTFLPNIIVSDKTLTYTPLLTNPVSTSATSTQGEPSVEYFI 239

Query: 402 EILKINYGSSPLN-----LGARNSQVGWALFDTGSSYTYFTKQAYSELIASL-KEVSSDG 455
            +  I   S  +      L   ++ +G     T + YT      Y  +  +  KE ++  
Sbjct: 240 GVKSIKINSKIVALNTSLLSISSAGLGGTKISTINPYTVLETSIYKAVTEAFIKESAARN 299

Query: 456 LVLDASDPTLPVCWRAKFPIRSIVDVKQFFKTLTLHFGSKWQIVSTKFHISPEGYLVISK 515
           +   AS      C+     + + +        L L   S        + I+    +V   
Sbjct: 300 ITRVASVAPFGACFSTDNILSTRLGPSVPSIDLVLQSESVV------WTITGSNSMVYIN 353

Query: 516 KGNICLGILDGSEVHNGSTIILGDISLRGQLVVYDNVNKRIGWAKSHCMNPGRFKSLPF 574
              +CLG++DG   +  ++I++G   L   LV +D    R+G++ +   +     +  F
Sbjct: 354 DNVVCLGVVDGGS-NLRTSIVIGGHQLEDNLVQFDLATSRVGFSGTLLGSRTTCANFNF 411
>3aup_A SBG7S, BG, basic 7S globulin; pepsin-like fold, plant protein; 1.91A {Glycine max} Length = 403 Back     alignment and structure
>1t6e_X Xylanase inhibitor; two beta-barrel domain structure, hydrolase inhibitor; 1.70A {Triticum aestivum} SCOP: b.50.1.2 PDB: 1t6g_A 2b42_A 3hd8_A Length = 381 Back     alignment and structure
>3lpj_A Beta-secretase 1; alzheimer'S, aspartyl protease, hydrolase; HET: TLA Z75; 1.79A {Homo sapiens} PDB: 3lpi_A* 3lpk_A* 3ohf_A* 3ohh_A* 3r2f_A* 3skf_A* 3skg_A* 2hiz_A* 2p83_A* 2va7_A* 2va5_A* 2va6_A* Length = 455 Back     alignment and structure
>2qp8_A Beta-secretase 1; BACE1, protease, alternative splicing, aspartyl protease, glycoprotein, hydrolase, membrane, transmembrane, zymogen; HET: TAR SC7; 1.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 2qk5_A* 2qmf_A* 2qmg_A* 2qmd_A* 4djx_A* 3l59_A* 3l5b_A* 3l5c_A* 3l58_A* 3l5d_A* 3l5f_A* 4dju_A* 4djv_A* 4djw_A* 3l5e_A* 4djy_A* 2zhv_A 2zhs_A 2zhr_A 2zhu_A ... Length = 395 Back     alignment and structure
>2ewy_A Beta-secretase 2; BACE2, aspartic protease, hydrolase; HET: DBO; 3.10A {Homo sapiens} Length = 383 Back     alignment and structure
>1j71_A Candidapepsin, aspartic proteinase; candida tropicalis aspartic protease, SAPT1, hydrolase; 1.80A {Candida tropicalis} SCOP: b.50.1.2 Length = 334 Back     alignment and structure
>3pvk_A Candidapepsin-2; hydrolase; 1.27A {Candida albicans} PDB: 1eag_A 3q70_A* 1zap_A* 2qzw_A 2h6t_A* 2h6s_A* Length = 342 Back     alignment and structure
>2qzx_A Candidapepsin-5; aspartic proteinase, aspartyl protease, CL PAIR of basic residues, glycoprotein, protease, secreted; HET: STA; 2.50A {Candida albicans} Length = 342 Back     alignment and structure
>3psg_A Pepsinogen; hydrolase(acid proteinase zymogen); 1.65A {Sus scrofa} SCOP: b.50.1.2 PDB: 2psg_A 4pep_A* 3pep_A* 1f34_A* 1psa_A* 1yx9_A 5pep_A 1flh_A 1qrp_E* 1psn_A* 1pso_E* 3utl_A Length = 370 Back     alignment and structure
>2bju_A Plasmepsin II; aspartic proteinase, drug design, malaria, aspartyl protease, glycoprotein, hydrolase, signal, zymogen; HET: IH4; 1.56A {Plasmodium falciparum} SCOP: b.50.1.2 PDB: 1pfz_A 1xdh_A* 1lf3_A 1w6h_A* 1w6i_A* 1lf4_A* 1lf2_A* 1lee_A* 1m43_A* 2igx_A* 1sme_A* 1me6_A* 1xe6_A* 1xe5_A* 2igy_A* 2r9b_A 3f9q_A 3qrv_A 3qs1_A* 2anl_A* ... Length = 453 Back     alignment and structure
>3fv3_A SAPP1P-secreted aspartic protease 1; secreted aspartic protease, virulence factor, H; HET: STA; 1.85A {Candida parapsilosis} PDB: 3tne_A* Length = 339 Back     alignment and structure
>3c9x_A Trichoderma reesei aspartic protease; aspartic proteinase, aspartyl protease, hydrolase; 1.70A {Trichoderma reesei} PDB: 3c9y_A* 3emy_A* Length = 329 Back     alignment and structure
>1am5_A Pepsin, acid proteinase; aspartyl protease, hydrolase; 2.16A {Gadus morhua} SCOP: b.50.1.2 Length = 324 Back     alignment and structure
>3cms_A Chymosin B; hydrolase, acid proteinase; 2.00A {Bos taurus} SCOP: b.50.1.2 PDB: 4cms_A 1czi_E* 1cms_A Length = 323 Back     alignment and structure
>1bxo_A Protein (penicillopepsin); hydrolase, phosphonate inhibitors, macrocycle; HET: MAN PP7; 0.95A {Penicillium janthinellum} SCOP: b.50.1.2 PDB: 1apu_E* 1apv_E* 1apw_E* 1apt_E* 1bxq_A* 1ppk_E* 1ppl_E* 1ppm_E* 2wea_A* 2web_A* 2wec_A* 2wed_A* 3app_A Length = 323 Back     alignment and structure
>1tzs_A Cathepsin E; hydrolase, aspartic protease, activation intermediate; 2.35A {Homo sapiens} Length = 351 Back     alignment and structure
>1htr_B Gastricsin; aspartyl protease; 1.62A {Homo sapiens} SCOP: b.50.1.2 PDB: 1avf_A Length = 329 Back     alignment and structure
>1mpp_A Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomucor pusillus} SCOP: b.50.1.2 PDB: 2asi_A* 2rmp_A* Length = 361 Back     alignment and structure
>1ibq_A Aspergillopepsin; aspartic proteinase, hydrolase; HET: MAN; 2.14A {Aspergillus phoenicis} SCOP: b.50.1.2 Length = 325 Back     alignment and structure
>3qvc_A Histo-aspartic protease; HAP, plasmepsin, zymogen, hydrolase; 2.10A {Plasmodium falciparum} PDB: 3qvi_A* 3fns_A 3fnt_A* 3fnu_A* Length = 451 Back     alignment and structure
>1miq_A Plasmepsin; aspartic proteinase zymogen, domain opening, hydrolase; 2.50A {Plasmodium vivax} SCOP: b.50.1.2 PDB: 1ls5_A* Length = 375 Back     alignment and structure
>2apr_A Rhizopuspepsin; hydrolase (aspartic proteinase); 1.80A {Rhizopus microsporus var} SCOP: b.50.1.2 PDB: 3apr_E* 4apr_E* 5apr_E* 6apr_E* 1uh9_A 1uh8_A 1uh7_A Length = 325 Back     alignment and structure
>1izd_A Aspartic proteinase; sugar binding, acid protease, hydrolase; HET: MAN; 1.90A {Aspergillus oryzae} SCOP: b.50.1.2 PDB: 1ize_A* Length = 323 Back     alignment and structure
>1wkr_A Polyporopepsin; hydrolase, hydrolase-hydrolase inhibitor complex; HET: STA; 1.30A {Irpex lacteus} SCOP: b.50.1.2 Length = 340 Back     alignment and structure
>1oew_A Endothiapepsin; hydrolase, aspartic proteinase mechanism, atomic resolution, succinimide, anisotropic refinement; HET: SUI; 0.9A {Cryphonectria parasitica} SCOP: b.50.1.2 PDB: 1gkt_A* 1gvt_A* 1gvv_A* 1gvw_A* 1gvx_A* 1gvu_A* 1oex_A* 2jji_A* 2jjj_A* 2vs2_A* 3uri_A* 3urj_A* 3url_A* 3pww_A* 1e80_E* 1e81_E* 1e82_E* 1e5o_E* 1eed_P* 1epl_E* ... Length = 329 Back     alignment and structure
>1dpj_A Proteinase A; proteinase A, hydrolase-hydrolase inhibitor COM; HET: BMA MAN NAG; 1.80A {Saccharomyces cerevisiae} SCOP: b.50.1.2 PDB: 1dp5_A* 1fmu_A* 1fmx_A* 1fq5_A* 1fq4_A* 1fq6_A* 1fq7_A* 1fq8_A* 2jxr_A* 1g0v_A* Length = 329 Back     alignment and structure
>1yg9_A Aspartic protease BLA G 2; allegren, hydrolase, allergen; HET: NAG; 1.30A {Blattella germanica} PDB: 2nr6_A* 3liz_A* Length = 330 Back     alignment and structure
>2x0b_A Renin; hydrolase-hormone complex, hydrolase hormone complex, vasoconstrictor, glycoprotein, hypertension, serpins; 4.33A {Homo sapiens} Length = 383 Back     alignment and structure
>3k1w_A Renin; protease, alternative splicing, aspartyl protease, cleavage on PAIR of basic residues, disease mutation, disulfide bond, glycoprotein; HET: BFX NDG HSQ; 1.50A {Homo sapiens} PDB: 3d91_A* 3g70_A* 3g6z_A* 3own_A* 2iko_A* 1bbs_A* 1rne_A* 2bkt_A* 2bks_A* 2iku_A* 2il2_A* 2ren_A* 2v0z_C* 2v10_C* 2v11_C* 2v12_C* 2v13_A* 2v16_C* 3g72_A* 3oot_A* ... Length = 341 Back     alignment and structure
>1b5f_A Protein (cardosin A); hydrolase, aspartic proteinase; HET: NAG FUC BMA MAN; 1.72A {Cynara cardunculus} SCOP: b.50.1.2 Length = 239 Back     alignment and structure
>1qdm_A Prophytepsin; aspartic proteinases, saposin-like domain, zymogen structure, hydrolase; 2.30A {Hordeum vulgare} SCOP: a.64.1.2 b.50.1.2 Length = 478 Back     alignment and structure
>1lya_B Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_B* 1lyw_B* Length = 241 Back     alignment and structure
>1b5f_B Protein (cardosin A); hydrolase, aspartic proteinase; HET: NAG FUC BMA MAN; 1.72A {Cynara cardunculus} SCOP: b.50.1.2 Length = 87 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query577
3vla_A413 EDGP; extracellular, inhibitor, plant protein; HET 100.0
3psg_A370 Pepsinogen; hydrolase(acid proteinase zymogen); 1. 100.0
2x0b_A383 Renin; hydrolase-hormone complex, hydrolase hormon 100.0
1tzs_A351 Cathepsin E; hydrolase, aspartic protease, activat 100.0
2apr_A325 Rhizopuspepsin; hydrolase (aspartic proteinase); 1 100.0
1mpp_A361 Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomu 100.0
1j71_A334 Candidapepsin, aspartic proteinase; candida tropic 100.0
2qzx_A342 Candidapepsin-5; aspartic proteinase, aspartyl pro 100.0
1am5_A324 Pepsin, acid proteinase; aspartyl protease, hydrol 100.0
4aa9_A320 Chymosin; hydrolase, aspartic peptidase, rennet; H 100.0
1dpj_A329 Proteinase A; proteinase A, hydrolase-hydrolase in 100.0
3cms_A323 Chymosin B; hydrolase, acid proteinase; 2.00A {Bos 100.0
3aup_A403 SBG7S, BG, basic 7S globulin; pepsin-like fold, pl 100.0
3fv3_A339 SAPP1P-secreted aspartic protease 1; secreted aspa 100.0
1htr_B329 Gastricsin; aspartyl protease; 1.62A {Homo sapiens 100.0
3pvk_A342 Candidapepsin-2; hydrolase; 1.27A {Candida albican 100.0
3c9x_A329 Trichoderma reesei aspartic protease; aspartic pro 100.0
3k1w_A341 Renin; protease, alternative splicing, aspartyl pr 100.0
1oew_A329 Endothiapepsin; hydrolase, aspartic proteinase mec 100.0
1t6e_X381 Xylanase inhibitor; two beta-barrel domain structu 100.0
2bju_A453 Plasmepsin II; aspartic proteinase, drug design, m 100.0
1miq_A375 Plasmepsin; aspartic proteinase zymogen, domain op 100.0
1ibq_A325 Aspergillopepsin; aspartic proteinase, hydrolase; 100.0
1izd_A323 Aspartic proteinase; sugar binding, acid protease, 100.0
1qdm_A478 Prophytepsin; aspartic proteinases, saposin-like d 100.0
1yg9_A330 Aspartic protease BLA G 2; allegren, hydrolase, al 100.0
3qvc_A451 Histo-aspartic protease; HAP, plasmepsin, zymogen, 100.0
2ewy_A383 Beta-secretase 2; BACE2, aspartic protease, hydrol 100.0
1bxo_A323 Protein (penicillopepsin); hydrolase, phosphonate 100.0
3lpj_A455 Beta-secretase 1; alzheimer'S, aspartyl protease, 100.0
3vf3_A402 Beta-secretase 1; structure-based drug design, hyd 100.0
2qp8_A395 Beta-secretase 1; BACE1, protease, alternative spl 100.0
1wkr_A340 Polyporopepsin; hydrolase, hydrolase-hydrolase inh 100.0
1b5f_A239 Protein (cardosin A); hydrolase, aspartic proteina 100.0
1lya_B241 Cathepsin D; lysosomal aspartic protease; HET: NAG 100.0
1lya_A97 Cathepsin D; lysosomal aspartic protease; HET: NAG 99.8
1b5f_B87 Protein (cardosin A); hydrolase, aspartic proteina 99.54
3s8i_A148 Protein DDI1 homolog 1; protease, structural genom 91.53
3s8i_A148 Protein DDI1 homolog 1; protease, structural genom 82.12
2i1a_A148 DNA damage-inducible protein DDI1; acid protease f 80.59
>3vla_A EDGP; extracellular, inhibitor, plant protein; HET: NAG; 0.95A {Daucus carota} PDB: 3vlb_A Back     alignment and structure
Probab=100.00  E-value=7.9e-58  Score=491.10  Aligned_cols=361  Identities=22%  Similarity=0.353  Sum_probs=283.5

Q ss_pred             CCceEeeeecCCCCCceEEEEEEecCCCceEEEEEECCCCceeEecCCCCCCCCCCCCCcCCCCCCccccCCCcchhhhh
Q 008104          185 DSSSIFPLRGNIYPDGLYFTYMIVGNPPRPYYLDMDTGSDLTWIQCDAPCSSCAKGANPLYKPRMGNILPYKDSLCMEIQ  264 (577)
Q Consensus       185 ~~~~~~pl~g~~~~~~~Y~~~I~IGTPpQ~~~v~vDTGSs~tWV~~~~~C~~C~~~~~~~ydps~Sstv~c~~~~c~~~~  264 (577)
                      .+.+.+||+++. .+++|+++|.||||||+|.|+|||||+++||+|. +|          |..+..+.++|.++.|....
T Consensus         6 ~~~~~~pv~~d~-~~~~Y~~~i~iGTPpq~~~v~~DTGS~~lWv~c~-~c----------~~Sst~~~v~C~s~~C~~~~   73 (413)
T 3vla_A            6 PSALVVPVKKDA-STLQYVTTINQRTPLVSENLVVDLGGRFLWVDCD-QN----------YVSSTYRPVRCRTSQCSLSG   73 (413)
T ss_dssp             CSEEEEEEEECT-TTCCEEEEEEETTTTEEEEEEEETTCSSEEEECS-SS----------CCCTTCEECBTTSHHHHHTT
T ss_pred             CccEEEEeeecC-CCCeEEEEEEcCCCCcceEEEEeCCChhhhcccC-CC----------CCCCCcCccCCCcccccccc
Confidence            467899998764 7899999999999999999999999999999987 65          22222234999999998765


Q ss_pred             cCCCC--------CCCCCCCCceeEEEe-CCCCeEEEEEEEEEEEEeecCCC-----ccccceEEEEEEccCccccccCC
Q 008104          265 RNHKP--------GYCETCQQCDYEIEY-ADHSSSMGVLARDELHLTIENGS-----LTKPNVVFGCAYDQQGLLLNTLV  330 (577)
Q Consensus       265 ~~~~~--------~~c~~~~~~~~~i~Y-gdGs~~~G~~~~D~v~l~~~~g~-----~~~~~~~FG~a~~~~g~~~~~~~  330 (577)
                      .. .+        ..|. .+.|.|.+.| ++|+.+.|++++|+|+|+..+|.     +.++++.|||++.+.....  ..
T Consensus        74 ~~-~~~~c~s~~~~~c~-~~~c~~~i~Y~~d~~~~~G~l~~Dtv~l~~~~g~~~~~~~~v~~~~FGc~~~~~~~g~--~~  149 (413)
T 3vla_A           74 SI-ACGDCFNGPRPGCN-NNTCGVFPENPVINTATGGEVAEDVVSVESTDGSSSGRVVTVPRFIFSCAPTSLLQNL--AS  149 (413)
T ss_dssp             CC-EEECCSSCCBTTBC-SSEEEECCEETTTTEECCEEEEEEEEEEEEECSSBEEEEEEEEEEEEEEECGGGGTTS--CT
T ss_pred             cC-CCcccccCCCCCCC-CCcCcceeecCcCCceeeeEEEEEEEEecccCCCCcccceeeCCEEEECcccccccCc--cc
Confidence            32 11        1233 3579999999 58879999999999999765543     5788999999998632211  35


Q ss_pred             ccceEEecCCCCCCChHHHHhcCCccceEEEEeecCCCCCeeEEeCCCCC-------CCCC-ceEEeCccCCC-------
Q 008104          331 KTDGILGLSRAKVSLPSQLASQGIIKNVVGHCLTTNAGGGGYMFLGHDLV-------PSWG-MAWVPMLDSPF-------  395 (577)
Q Consensus       331 ~~dGIlGLg~~~~S~~~qL~~~g~i~~~FSl~L~~~~~~~G~l~fGd~~~-------~~g~-l~~~pl~~~~~-------  395 (577)
                      .+|||||||++.+|++.||.+++.++++||+||.++...+|+|+||+...       +.++ ++|+||+..+.       
T Consensus       150 ~~dGIlGLg~~~lSl~sql~~~~~i~~~FS~cL~~~~~~~G~l~fGg~~~~~~p~~~~~g~~l~~tPl~~~~~~~~~~~~  229 (413)
T 3vla_A          150 GVVGMAGLGRTRIALPSQFASAFSFKRKFAMCLSGSTSSNSVIIFGNDPYTFLPNIIVSDKTLTYTPLLTNPVSTSATST  229 (413)
T ss_dssp             TCCEEEECSSSSSSHHHHHHHHHTCCSEEEEECCSCSSSCEEEEEESCCEEETTTEEECTTTSEEEECBCCSSCCSSSCC
T ss_pred             ccccccccCCCCcchHHHHhhhcCCCceEEEeCCCCCCCceEEEECCCcccccccccccCCceeEeecccCCcccccccc
Confidence            78999999999999999999998889999999998666789999996432       5677 99999987642       


Q ss_pred             ----CcceEEEEeEEeeCCcceecCcccC-----CCccEEEecccccccccHHHHHHHHHHH-HhhcCCCceecCCCCCC
Q 008104          396 ----MELYHTEILKINYGSSPLNLGARNS-----QVGWALFDTGSSYTYFTKQAYSELIASL-KEVSSDGLVLDASDPTL  465 (577)
Q Consensus       396 ----~~~w~V~l~~I~vgg~~l~i~~~~~-----~~~~aIiDSGTt~i~lP~~~~~~l~~~i-~~~~~~~~~~~~~~~~~  465 (577)
                          ..+|.|+|++|.||++.+.++....     +...+||||||++++||+++|++|+++| +++....+.+.+....+
T Consensus       230 ~~~~~~~y~V~l~~IsVgg~~l~~~~~~~~~~~~g~~~aIiDSGTslt~lp~~~y~~l~~a~~~~~~~~~~~~~~~~~~~  309 (413)
T 3vla_A          230 QGEPSVEYFIGVKSIKINSKIVALNTSLLSISSAGLGGTKISTINPYTVLETSIYKAVTEAFIKESAARNITRVASVAPF  309 (413)
T ss_dssp             TTCCCCSCEECCCEEEETTEEECCCGGGTSBCTTSCBCEEECSSSSSEEEEHHHHHHHHHHHHHHHHHTTCCEECCCTTC
T ss_pred             ccCCCceEEEEEEEEEECCEEccCCchhcccccCCCCCEEEECCCCcEEcCHHHHHHHHHHHHHHhcccCCCcCCCCCCC
Confidence                1599999999999999988764321     3478999999999999999999999999 76642223333333445


Q ss_pred             ccccccCCCccccccccccceeEEEEEcccCceeeEEEEECCCccEEEeCCCceEEEEEcCCCCCCCCceEeChhhhccE
Q 008104          466 PVCWRAKFPIRSIVDVKQFFKTLTLHFGSKWQIVSTKFHISPEGYLVISKKGNICLGILDGSEVHNGSTIILGDISLRGQ  545 (577)
Q Consensus       466 ~~C~~~~~~~~~~~~~~~~~P~l~f~F~gg~~~~~~~~~l~p~~yl~~~~~g~~Cl~i~~~~~~~~~~~~ILG~~FLr~~  545 (577)
                      ..|+..+....  ...+..+|+|+|+|+|+    ++.|+|++++|+++..++.+|++++.... ..+..||||+.|||++
T Consensus       310 ~~C~~~~~~~~--~~~~~~lP~i~f~f~g~----~~~~~l~~~~y~~~~~~~~~Cl~~~~~~~-~~~~~~IlGd~fl~~~  382 (413)
T 3vla_A          310 GACFSTDNILS--TRLGPSVPSIDLVLQSE----SVVWTITGSNSMVYINDNVVCLGVVDGGS-NLRTSIVIGGHQLEDN  382 (413)
T ss_dssp             SCEEECTTCCE--ETTEECCCCEEEECSST----TCEEEECHHHHEEEEETTEEEECEEEEES-SCSSSEEECHHHHTTE
T ss_pred             cceeccCCccc--cccccCCCcEEEEEcCC----cEEEEeCccceEEEeCCCcEEEEEEecCC-CcccceeEehhhhcCe
Confidence            66987642110  12234689999999982    28999999999998766789998887542 1246899999999999


Q ss_pred             EEEEECCCCEEEEEecCCCCCCC
Q 008104          546 LVVYDNVNKRIGWAKSHCMNPGR  568 (577)
Q Consensus       546 yvVFD~~~~rIGfA~~~C~~~~~  568 (577)
                      |+|||++++|||||++.+.....
T Consensus       383 ~vvfD~~~~riGfa~~~~~~~~~  405 (413)
T 3vla_A          383 LVQFDLATSRVGFSGTLLGSRTT  405 (413)
T ss_dssp             EEEEETTTTEEEEEEEGGGGTCC
T ss_pred             EEEEECCCCEEEEEEecccCccc
Confidence            99999999999999976544433
>3psg_A Pepsinogen; hydrolase(acid proteinase zymogen); 1.65A {Sus scrofa} SCOP: b.50.1.2 PDB: 2psg_A 4pep_A* 3pep_A* 1f34_A* 1psa_A* 1yx9_A 5pep_A 1flh_A 1qrp_E* 1psn_A* 1pso_E* 3utl_A Back     alignment and structure
>2x0b_A Renin; hydrolase-hormone complex, hydrolase hormone complex, vasoconstrictor, glycoprotein, hypertension, serpins; 4.33A {Homo sapiens} Back     alignment and structure
>1tzs_A Cathepsin E; hydrolase, aspartic protease, activation intermediate; 2.35A {Homo sapiens} Back     alignment and structure
>2apr_A Rhizopuspepsin; hydrolase (aspartic proteinase); 1.80A {Rhizopus microsporus var} SCOP: b.50.1.2 PDB: 3apr_E* 4apr_E* 5apr_E* 6apr_E* 1uh9_A 1uh8_A 1uh7_A Back     alignment and structure
>1mpp_A Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomucor pusillus} SCOP: b.50.1.2 PDB: 2asi_A* 2rmp_A* Back     alignment and structure
>1j71_A Candidapepsin, aspartic proteinase; candida tropicalis aspartic protease, SAPT1, hydrolase; 1.80A {Candida tropicalis} SCOP: b.50.1.2 Back     alignment and structure
>2qzx_A Candidapepsin-5; aspartic proteinase, aspartyl protease, CL PAIR of basic residues, glycoprotein, protease, secreted; HET: STA; 2.50A {Candida albicans} Back     alignment and structure
>1am5_A Pepsin, acid proteinase; aspartyl protease, hydrolase; 2.16A {Gadus morhua} SCOP: b.50.1.2 Back     alignment and structure
>4aa9_A Chymosin; hydrolase, aspartic peptidase, rennet; HET: NAG; 1.60A {Camelus dromedarius} PDB: 4aa8_A 1czi_E* 1cms_A 4cms_A 3cms_A Back     alignment and structure
>1dpj_A Proteinase A; proteinase A, hydrolase-hydrolase inhibitor COM; HET: BMA MAN NAG; 1.80A {Saccharomyces cerevisiae} SCOP: b.50.1.2 PDB: 1dp5_A* 1fmu_A* 1fmx_A* 1fq5_A* 1fq4_A* 1fq6_A* 1fq7_A* 1fq8_A* 2jxr_A* 1g0v_A* Back     alignment and structure
>3cms_A Chymosin B; hydrolase, acid proteinase; 2.00A {Bos taurus} SCOP: b.50.1.2 PDB: 4cms_A 1czi_E* 1cms_A Back     alignment and structure
>3aup_A SBG7S, BG, basic 7S globulin; pepsin-like fold, plant protein; 1.91A {Glycine max} Back     alignment and structure
>3fv3_A SAPP1P-secreted aspartic protease 1; secreted aspartic protease, virulence factor, H; HET: STA; 1.85A {Candida parapsilosis} SCOP: b.50.1.0 PDB: 3tne_A* Back     alignment and structure
>1htr_B Gastricsin; aspartyl protease; 1.62A {Homo sapiens} SCOP: b.50.1.2 PDB: 1avf_A Back     alignment and structure
>3pvk_A Candidapepsin-2; hydrolase; 1.27A {Candida albicans} SCOP: b.50.1.2 PDB: 1eag_A 3q70_A* 1zap_A* 2qzw_A 2h6t_A* 2h6s_A* Back     alignment and structure
>3c9x_A Trichoderma reesei aspartic protease; aspartic proteinase, aspartyl protease, hydrolase; 1.70A {Trichoderma reesei} PDB: 3c9y_A* 3emy_A* Back     alignment and structure
>3k1w_A Renin; protease, alternative splicing, aspartyl protease, cleavage on PAIR of basic residues, disease mutation, disulfide bond, glycoprotein; HET: BFX NDG HSQ; 1.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 3d91_A* 3g70_A* 3g6z_A* 3own_A* 2iko_A* 1bbs_A* 1rne_A* 2bkt_A* 2bks_A* 2iku_A* 2il2_A* 2ren_A* 2v0z_C* 2v10_C* 2v11_C* 2v12_C* 2v13_A* 2v16_C* 3g72_A* 3oot_A* ... Back     alignment and structure
>1oew_A Endothiapepsin; hydrolase, aspartic proteinase mechanism, atomic resolution, succinimide, anisotropic refinement; HET: SUI; 0.9A {Cryphonectria parasitica} SCOP: b.50.1.2 PDB: 1gkt_A* 1gvt_A* 1gvv_A* 1gvw_A* 1gvx_A* 1gvu_A* 1oex_A* 2jji_A* 2jjj_A* 2vs2_A* 3uri_A* 3urj_A* 3url_A* 3pww_A* 1e80_E* 1e81_E* 1e82_E* 1e5o_E* 1eed_P* 1epl_E* ... Back     alignment and structure
>1t6e_X Xylanase inhibitor; two beta-barrel domain structure, hydrolase inhibitor; 1.70A {Triticum aestivum} SCOP: b.50.1.2 PDB: 1t6g_A 2b42_A 3hd8_A Back     alignment and structure
>2bju_A Plasmepsin II; aspartic proteinase, drug design, malaria, aspartyl protease, glycoprotein, hydrolase, signal, zymogen; HET: IH4; 1.56A {Plasmodium falciparum} SCOP: b.50.1.2 PDB: 1pfz_A 1xdh_A* 1lf3_A 1w6h_A* 1w6i_A* 1lf4_A* 1lf2_A* 1lee_A* 1m43_A* 2igx_A* 1sme_A* 1me6_A* 1xe6_A* 1xe5_A* 2igy_A* 2r9b_A 3f9q_A 3qrv_A 3qs1_A* 2anl_A* ... Back     alignment and structure
>1miq_A Plasmepsin; aspartic proteinase zymogen, domain opening, hydrolase; 2.50A {Plasmodium vivax} SCOP: b.50.1.2 PDB: 1ls5_A* Back     alignment and structure
>1ibq_A Aspergillopepsin; aspartic proteinase, hydrolase; HET: MAN; 2.14A {Aspergillus phoenicis} SCOP: b.50.1.2 Back     alignment and structure
>1izd_A Aspartic proteinase; sugar binding, acid protease, hydrolase; HET: MAN; 1.90A {Aspergillus oryzae} SCOP: b.50.1.2 PDB: 1ize_A* Back     alignment and structure
>1qdm_A Prophytepsin; aspartic proteinases, saposin-like domain, zymogen structure, hydrolase; 2.30A {Hordeum vulgare} SCOP: a.64.1.2 b.50.1.2 Back     alignment and structure
>1yg9_A Aspartic protease BLA G 2; allegren, hydrolase, allergen; HET: NAG; 1.30A {Blattella germanica} PDB: 2nr6_A* 3liz_A* Back     alignment and structure
>3qvc_A Histo-aspartic protease; HAP, plasmepsin, zymogen, hydrolase; 2.10A {Plasmodium falciparum} PDB: 3qvi_A* 3fns_A 3fnt_A* 3fnu_A* Back     alignment and structure
>2ewy_A Beta-secretase 2; BACE2, aspartic protease, hydrolase; HET: DBO; 3.10A {Homo sapiens} Back     alignment and structure
>1bxo_A Protein (penicillopepsin); hydrolase, phosphonate inhibitors, macrocycle; HET: MAN PP7; 0.95A {Penicillium janthinellum} SCOP: b.50.1.2 PDB: 1apu_E* 1apv_E* 1apw_E* 1apt_E* 1bxq_A* 1ppk_E* 1ppl_E* 1ppm_E* 2wea_A* 2web_A* 2wec_A* 2wed_A* 3app_A Back     alignment and structure
>3lpj_A Beta-secretase 1; alzheimer'S, aspartyl protease, hydrolase; HET: TLA Z75; 1.79A {Homo sapiens} PDB: 3lpi_A* 3lpk_A* 3ohf_A* 3ohh_A* 3r2f_A* 3skf_A* 3skg_A* 4fse_A* 2hiz_A* 2p83_A* 2va7_A* 2va5_A* 2va6_A* Back     alignment and structure
>3vf3_A Beta-secretase 1; structure-based drug design, hydrolase-hydrolase inhibitor C; HET: 0GS; 1.48A {Homo sapiens} PDB: 2f3e_A* 2f3f_A* 1ym2_A* 3dv1_A* 3dv5_A* 3k5c_A* 3k5f_A* 3k5g_A* 3pi5_A* 3qbh_A* 3duy_A* 3veu_A* 3vg1_A* 4d83_A* 4d88_A* 4d89_A* 4d8c_A* 3msk_A* 3k5d_A* 1ym4_A* ... Back     alignment and structure
>2qp8_A Beta-secretase 1; BACE1, protease, alternative splicing, aspartyl protease, glycoprotein, hydrolase, membrane, transmembrane, zymogen; HET: TAR SC7; 1.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 2qk5_A* 2qmf_A* 2qmg_A* 2qmd_A* 4djx_A* 3l59_A* 3l5b_A* 3l5c_A* 3l58_A* 3l5d_A* 3l5f_A* 4dju_A* 4djv_A* 4djw_A* 3l5e_A* 4djy_A* 2zhv_A 2zhs_A 2zhr_A 2zhu_A ... Back     alignment and structure
>1wkr_A Polyporopepsin; hydrolase, hydrolase-hydrolase inhibitor complex; HET: STA; 1.30A {Irpex lacteus} SCOP: b.50.1.2 Back     alignment and structure
>1b5f_A Protein (cardosin A); hydrolase, aspartic proteinase; HET: NAG FUC BMA MAN; 1.72A {Cynara cardunculus} SCOP: b.50.1.2 Back     alignment and structure
>1lya_B Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_B* 1lyw_B* Back     alignment and structure
>1lya_A Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_A* 1lyw_A* Back     alignment and structure
>1b5f_B Protein (cardosin A); hydrolase, aspartic proteinase; HET: NAG FUC BMA MAN; 1.72A {Cynara cardunculus} SCOP: b.50.1.2 Back     alignment and structure
>3s8i_A Protein DDI1 homolog 1; protease, structural genomics, structural genomics consortiu retropepsin-like domain, protein turnover, hydrolase; 1.70A {Homo sapiens} Back     alignment and structure
>3s8i_A Protein DDI1 homolog 1; protease, structural genomics, structural genomics consortiu retropepsin-like domain, protein turnover, hydrolase; 1.70A {Homo sapiens} Back     alignment and structure
>2i1a_A DNA damage-inducible protein DDI1; acid protease fold, dimer, retroviral protease domain, protein turnover; HET: DNA; 2.30A {Saccharomyces cerevisiae} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 577
d1t6ex_381 b.50.1.2 (X:) Xylanase inhibitor TAXI-I {Wheat (Tr 3e-49
d2qp8a1387 b.50.1.2 (A:60-446) beta-secretase (memapsin) {Hum 5e-37
d3cmsa_323 b.50.1.2 (A:) Chymosin (synonym: renin) {Cow (Bos 2e-34
g1lya.1338 b.50.1.2 (A:,B:) Cathepsin D {Human (Homo sapiens) 1e-32
d2apra_325 b.50.1.2 (A:) Acid protease {Bread mold (Rhizopus 1e-32
g1b5f.1326 b.50.1.2 (A:,B:) Plant acid proteinase, phytepsin 1e-31
d1qdma2337 b.50.1.2 (A:2-247,A:248-338) Plant acid proteinase 5e-31
g1htr.1372 b.50.1.2 (P:,B:) Pepsin(ogen) {Human (Homo sapiens 2e-30
d1dpja_329 b.50.1.2 (A:) Acid protease {Baker's yeast (Saccha 2e-30
d1j71a_334 b.50.1.2 (A:) Acid protease {Yeast (Candida tropic 4e-30
d1izea_323 b.50.1.2 (A:) Acid protease {Fungus (Aspergillus o 5e-30
d1am5a_324 b.50.1.2 (A:) Pepsin(ogen) {Atlantic cod (Gadus mo 2e-29
d1oewa_330 b.50.1.2 (A:) Endothiapepsin {Chestnut blight fung 2e-29
d1miqa_373 b.50.1.2 (A:) Plasmepsin (a hemoglobin-degrading e 3e-29
d3psga_370 b.50.1.2 (A:) Pepsin(ogen) {Pig (Sus scrofa) [TaxI 3e-29
d1bxoa_323 b.50.1.2 (A:) Acid protease {Fungus (Penicillium j 7e-29
d1eaga_342 b.50.1.2 (A:) Acid protease {Yeast (Candida albica 3e-28
d2bjua1329 b.50.1.2 (A:1-329) Plasmepsin (a hemoglobin-degrad 3e-27
d1mppa_357 b.50.1.2 (A:) Pepsin {Mucor pusillus [TaxId: 4840] 6e-27
d1smra_335 b.50.1.2 (A:) Chymosin (synonym: renin) {Mouse (Mu 2e-26
d1wkra_340 b.50.1.2 (A:) Acid protease {Irpex lacteus (Polypo 5e-26
d1hrna_337 b.50.1.2 (A:) Chymosin (synonym: renin) {Human (Ho 5e-24
>d1t6ex_ b.50.1.2 (X:) Xylanase inhibitor TAXI-I {Wheat (Triticum aestivum) [TaxId: 4565]} Length = 381 Back     information, alignment and structure

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Xylanase inhibitor TAXI-I
species: Wheat (Triticum aestivum) [TaxId: 4565]

 Score =  172 bits (437), Expect = 3e-49
 Identities = 68/380 (17%), Positives = 118/380 (31%), Gaps = 33/380 (8%)

Query: 197 YPDGLYFTYMIVGNPPRPYYLDMDTGSDLTWIQCDAPCSSCAKGANPLYKPRMGNILPYK 256
               LY      G       L +D    L W  CD      A+   P   P       Y 
Sbjct: 11  PATSLYTIPFHDGAS-----LVLDVAGPLVWSTCD-GGQPPAE--IPCSSPTCLLANAYP 62

Query: 257 DSLCMEIQRNHKPGYCETCQQCDYEIEYADHSSSMGVLARDELHLTIENGSLTKPNVVFG 316
              C                   Y       + + G L+         +GS     V  G
Sbjct: 63  APGC---PAPSCGSDKHDKPCTAYPYNPVSGACAAGSLSHTRFVANTTDGSKPVSKVNVG 119

Query: 317 CAYD--QQGLLLNTLVKTDGILGLSRAKVSLPSQLASQGIIKNVVGHCLTTNAGGGGYMF 374
                    LL +    + G+ GL+ + ++LP+Q+AS   + N    CL T   G     
Sbjct: 120 VLAACAPSKLLASLPRGSTGVAGLANSGLALPAQVASAQKVANRFLLCLPTGGPGVAIFG 179

Query: 375 LGHDLVP--SWGMAWVPMLDSPFMELYHTEILKINYGSSPLNLGARNSQVGWALFDTGSS 432
            G    P  +  M + P++       ++     I  G + + +       G  +  T   
Sbjct: 180 GGPVPWPQFTQSMPYTPLVTKGGSPAHYISARSIVVGDTRVPVPEGALATGGVMLSTRLP 239

Query: 433 YTYFTKQAYSELIASLKEVSSDGLVLDASDPT-------LPVCWRAKFPIRSIVDVKQFF 485
           Y       Y  L+ +  +  +      A             VC+  K    ++       
Sbjct: 240 YVLLRPDVYRPLMDAFTKALAAQHANGAPVARAVEAVAPFGVCYDTKTLGNNLGGYAVPN 299

Query: 486 KTLTLHFGSKWQIVSTKFHISPEGYLVISKKGNICLGILDGSEV----HNGSTIILGDIS 541
             L L  GS W        ++ +  +V  K+G  C+  ++   V         +ILG   
Sbjct: 300 VQLGLDGGSDWT-------MTGKNSMVDVKQGTACVAFVEMKGVAAGDGRAPAVILGGAQ 352

Query: 542 LRGQLVVYDNVNKRIGWAKS 561
           +   ++ +D   KR+G+++ 
Sbjct: 353 MEDFVLDFDMEKKRLGFSRL 372
>d2qp8a1 b.50.1.2 (A:60-446) beta-secretase (memapsin) {Human (Homo sapiens) [TaxId: 9606]} Length = 387 Back     information, alignment and structure
>d3cmsa_ b.50.1.2 (A:) Chymosin (synonym: renin) {Cow (Bos taurus) [TaxId: 9913]} Length = 323 Back     information, alignment and structure
>d2apra_ b.50.1.2 (A:) Acid protease {Bread mold (Rhizopus chinensis) [TaxId: 4843]} Length = 325 Back     information, alignment and structure
>d1qdma2 b.50.1.2 (A:2-247,A:248-338) Plant acid proteinase, phytepsin {Barley (Hordeum vulgare) [TaxId: 4513]} Length = 337 Back     information, alignment and structure
>d1dpja_ b.50.1.2 (A:) Acid protease {Baker's yeast (Saccharomyces cerevisiae), proteinase A [TaxId: 4932]} Length = 329 Back     information, alignment and structure
>d1j71a_ b.50.1.2 (A:) Acid protease {Yeast (Candida tropicalis) [TaxId: 5482]} Length = 334 Back     information, alignment and structure
>d1izea_ b.50.1.2 (A:) Acid protease {Fungus (Aspergillus oryzae) [TaxId: 5062]} Length = 323 Back     information, alignment and structure
>d1am5a_ b.50.1.2 (A:) Pepsin(ogen) {Atlantic cod (Gadus morhua) [TaxId: 8049]} Length = 324 Back     information, alignment and structure
>d1miqa_ b.50.1.2 (A:) Plasmepsin (a hemoglobin-degrading enzyme) {Plasmodium vivax [TaxId: 5855]} Length = 373 Back     information, alignment and structure
>d3psga_ b.50.1.2 (A:) Pepsin(ogen) {Pig (Sus scrofa) [TaxId: 9823]} Length = 370 Back     information, alignment and structure
>d1bxoa_ b.50.1.2 (A:) Acid protease {Fungus (Penicillium janthinellum), penicillopepsin [TaxId: 5079]} Length = 323 Back     information, alignment and structure
>d1eaga_ b.50.1.2 (A:) Acid protease {Yeast (Candida albicans) [TaxId: 5476]} Length = 342 Back     information, alignment and structure
>d2bjua1 b.50.1.2 (A:1-329) Plasmepsin (a hemoglobin-degrading enzyme) {Plasmodium falciparum, plasmepsin II [TaxId: 5833]} Length = 329 Back     information, alignment and structure
>d1mppa_ b.50.1.2 (A:) Pepsin {Mucor pusillus [TaxId: 4840]} Length = 357 Back     information, alignment and structure
>d1smra_ b.50.1.2 (A:) Chymosin (synonym: renin) {Mouse (Mus musculus) [TaxId: 10090]} Length = 335 Back     information, alignment and structure
>d1wkra_ b.50.1.2 (A:) Acid protease {Irpex lacteus (Polyporus tulipiferae), Polyporopepsin [TaxId: 5319]} Length = 340 Back     information, alignment and structure
>d1hrna_ b.50.1.2 (A:) Chymosin (synonym: renin) {Human (Homo sapiens) [TaxId: 9606]} Length = 337 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query577
d3psga_370 Pepsin(ogen) {Pig (Sus scrofa) [TaxId: 9823]} 100.0
g1htr.1372 Pepsin(ogen) {Human (Homo sapiens), progastricsin 100.0
d2apra_325 Acid protease {Bread mold (Rhizopus chinensis) [Ta 100.0
d1dpja_329 Acid protease {Baker's yeast (Saccharomyces cerevi 100.0
d1j71a_334 Acid protease {Yeast (Candida tropicalis) [TaxId: 100.0
d1oewa_330 Endothiapepsin {Chestnut blight fungus (Endothia p 100.0
d1miqa_373 Plasmepsin (a hemoglobin-degrading enzyme) {Plasmo 100.0
d1am5a_324 Pepsin(ogen) {Atlantic cod (Gadus morhua) [TaxId: 100.0
d1smra_335 Chymosin (synonym: renin) {Mouse (Mus musculus) [T 100.0
d1mppa_357 Pepsin {Mucor pusillus [TaxId: 4840]} 100.0
d1eaga_342 Acid protease {Yeast (Candida albicans) [TaxId: 54 100.0
d2qp8a1387 beta-secretase (memapsin) {Human (Homo sapiens) [T 100.0
d1hrna_337 Chymosin (synonym: renin) {Human (Homo sapiens) [T 100.0
d1izea_323 Acid protease {Fungus (Aspergillus oryzae) [TaxId: 100.0
d1t6ex_381 Xylanase inhibitor TAXI-I {Wheat (Triticum aestivu 100.0
d2bjua1329 Plasmepsin (a hemoglobin-degrading enzyme) {Plasmo 100.0
d1bxoa_323 Acid protease {Fungus (Penicillium janthinellum), 100.0
d3cmsa_323 Chymosin (synonym: renin) {Cow (Bos taurus) [TaxId 100.0
d1wkra_340 Acid protease {Irpex lacteus (Polyporus tulipifera 100.0
g1lya.1338 Cathepsin D {Human (Homo sapiens) [TaxId: 9606]} 100.0
g1b5f.1326 Plant acid proteinase, phytepsin {Cynara carduncul 100.0
d1qdma2337 Plant acid proteinase, phytepsin {Barley (Hordeum 100.0
>d3psga_ b.50.1.2 (A:) Pepsin(ogen) {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Pepsin(ogen)
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=100.00  E-value=1.4e-53  Score=449.44  Aligned_cols=314  Identities=24%  Similarity=0.435  Sum_probs=258.1

Q ss_pred             CceEeeeecCCCCCceEEEEEEecCCCceEEEEEECCCCceeEecCCCCCCCCCCCCCcCCCCCCccccCCCcchhhhhc
Q 008104          186 SSSIFPLRGNIYPDGLYFTYMIVGNPPRPYYLDMDTGSDLTWIQCDAPCSSCAKGANPLYKPRMGNILPYKDSLCMEIQR  265 (577)
Q Consensus       186 ~~~~~pl~g~~~~~~~Y~~~I~IGTPpQ~~~v~vDTGSs~tWV~~~~~C~~C~~~~~~~ydps~Sstv~c~~~~c~~~~~  265 (577)
                      .....||..  +.|..|+++|.||||||+|+|+|||||+++||+|. .|..|.|+.++.|||++|+|          +..
T Consensus        44 ~~~~~~l~n--~~d~~Y~~~i~iGtP~Q~~~vi~DTGSs~~Wv~~~-~C~~~~~~~~~~yd~~~Sst----------~~~  110 (370)
T d3psga_          44 LIGDEPLEN--YLDTEYFGTIGIGTPAQDFTVIFDTGSSNLWVPSV-YCSSLACSDHNQFNPDDSST----------FEA  110 (370)
T ss_dssp             SSCCCTTGG--GTTCCEEEEEEETTTTEEEEEEEETTCCCEEEEBT-TCCSGGGTTSCCBCGGGCTT----------CEE
T ss_pred             ccccccccc--ccCCEEEEEEEEcCCCeEEEEEEeCCCCCeEEECc-cCCCcccccccccCCCcccc----------ccc
Confidence            334556653  46789999999999999999999999999999999 99999999999999999985          222


Q ss_pred             CCCCCCCCCCCCceeEEEeCCCCeEEEEEEEEEEEEeecCCCccccceEEEEEEccCccccccCCccceEEecCCCC---
Q 008104          266 NHKPGYCETCQQCDYEIEYADHSSSMGVLARDELHLTIENGSLTKPNVVFGCAYDQQGLLLNTLVKTDGILGLSRAK---  342 (577)
Q Consensus       266 ~~~~~~c~~~~~~~~~i~YgdGs~~~G~~~~D~v~l~~~~g~~~~~~~~FG~a~~~~g~~~~~~~~~dGIlGLg~~~---  342 (577)
                      .          .|.|.+.|++| .+.|.++.|++.+    ++.++.++.|||++...+.+.. ....+||+|||++.   
T Consensus       111 ~----------~~~~~~~Yg~G-s~~G~~~~d~~~~----~~~~~~~~~f~~~~~~~~~~~~-~~~~~Gi~gl~~~~~~~  174 (370)
T d3psga_         111 T----------SQELSITYGTG-SMTGILGYDTVQV----GGISDTNQIFGLSETEPGSFLY-YAPFDGILGLAYPSISA  174 (370)
T ss_dssp             E----------EEEEEEESSSC-EEEEEEEEEEEEE----TTEEEEEEEEEEECSCCCGGGG-GCSCSEEEECSCGGGCG
T ss_pred             C----------CCcEEEEeCCc-eEEEEEEEEEEee----eceeeeeeEEEEEeeccCceec-ccccccccccccCcccc
Confidence            2          68999999999 7999999999999    8999999999999988776654 56789999999864   


Q ss_pred             ---CCChHHHHhcCCc-cceEEEEeecCCCCCeeEEeC--CCCCCCCCceEEeCccCCCCcceEEEEeEEeeCCcceecC
Q 008104          343 ---VSLPSQLASQGII-KNVVGHCLTTNAGGGGYMFLG--HDLVPSWGMAWVPMLDSPFMELYHTEILKINYGSSPLNLG  416 (577)
Q Consensus       343 ---~S~~~qL~~~g~i-~~~FSl~L~~~~~~~G~l~fG--d~~~~~g~l~~~pl~~~~~~~~w~V~l~~I~vgg~~l~i~  416 (577)
                         .+++++|.++|+| .++||+|+.++...+|.|+||  |..++.++++|+|+...   .+|.|.++++.++|+.+.. 
T Consensus       175 ~~~~~~~~~l~~~~~i~~~~fs~~l~~~~~~~g~l~~Gg~d~~~~~~~l~~~p~~~~---~~w~v~~~~i~v~g~~~~~-  250 (370)
T d3psga_         175 SGATPVFDNLWDQGLVSQDLFSVYLSSNDDSGSVVLLGGIDSSYYTGSLNWVPVSVE---GYWQITLDSITMDGETIAC-  250 (370)
T ss_dssp             GGCCCHHHHHHHTTCSSSSEEEEEEC-----CEEEEETCCCGGGBSSCCEEEECSEE---TTEEEEECEEESSSSEEEC-
T ss_pred             cCCCchhhhhhhhcccccceeEEEeecCCCCCceEecCCcCchhcccceeEEeeccc---ceEEEEEeeEEeCCeEEec-
Confidence               3488999999999 999999999887889999999  46788899999999766   5999999999999988764 


Q ss_pred             cccCCCccEEEecccccccccHHHHHHHHHHH-HhhcCCCceecCCCCCCccccccCCCccccccccccceeEEEEEccc
Q 008104          417 ARNSQVGWALFDTGSSYTYFTKQAYSELIASL-KEVSSDGLVLDASDPTLPVCWRAKFPIRSIVDVKQFFKTLTLHFGSK  495 (577)
Q Consensus       417 ~~~~~~~~aIiDSGTt~i~lP~~~~~~l~~~i-~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~P~l~f~F~gg  495 (577)
                         .....+||||||++++||++++++|++++ +......      ...++ |+..+           .+|+|+|+|+| 
T Consensus       251 ---~~~~~aiiDSGTs~~~lp~~~~~~i~~~l~~~~~~~~------~~~~~-C~~~~-----------~~P~l~f~f~g-  308 (370)
T d3psga_         251 ---SGGCQAIVDTGTSLLTGPTSAIANIQSDIGASENSDG------EMVIS-CSSID-----------SLPDIVFTIDG-  308 (370)
T ss_dssp             ---TTCEEEEECTTCCSEEEEHHHHHHHHHHTTCEECTTC------CEECC-GGGGG-----------GCCCEEEEETT-
T ss_pred             ---CCCccEEEecCCceEeCCHHHHHHHHHHhCCeeecCC------cEEEe-ccccC-----------CCceEEEEECC-
Confidence               34578999999999999999999999999 5443211      11233 76532           47999999976 


Q ss_pred             CceeeEEEEECCCccEEEeCCCceEE-EEEcCCC-CCCCCceEeChhhhccEEEEEECCCCEEEEEec
Q 008104          496 WQIVSTKFHISPEGYLVISKKGNICL-GILDGSE-VHNGSTIILGDISLRGQLVVYDNVNKRIGWAKS  561 (577)
Q Consensus       496 ~~~~~~~~~l~p~~yl~~~~~g~~Cl-~i~~~~~-~~~~~~~ILG~~FLr~~yvVFD~~~~rIGfA~~  561 (577)
                           +.|.|+|++|+++..  ..|+ ++..... ...++.||||++|||++|+|||++++|||||++
T Consensus       309 -----~~~~l~~~~yi~~~~--~~c~~~~~~~~~~~~~~~~~ILG~~flr~~y~vfD~~~~~IGfAp~  369 (370)
T d3psga_         309 -----VQYPLSPSAYILQDD--DSCTSGFEGMDVPTSSGELWILGDVFIRQYYTVFDRANNKVGLAPV  369 (370)
T ss_dssp             -----EEEEECHHHHEEECS--SCEEESEEEECCCTTSCCEEEECHHHHTTEEEEEETTTTEEEEEEB
T ss_pred             -----EEEEEChHHeEEEcC--CeEEEEEEEcccCCCCCCcEEECHHhhcCEEEEEECCCCEEEEEec
Confidence                 899999999999743  3463 3332211 123568999999999999999999999999986
>d2apra_ b.50.1.2 (A:) Acid protease {Bread mold (Rhizopus chinensis) [TaxId: 4843]} Back     information, alignment and structure
>d1dpja_ b.50.1.2 (A:) Acid protease {Baker's yeast (Saccharomyces cerevisiae), proteinase A [TaxId: 4932]} Back     information, alignment and structure
>d1j71a_ b.50.1.2 (A:) Acid protease {Yeast (Candida tropicalis) [TaxId: 5482]} Back     information, alignment and structure
>d1miqa_ b.50.1.2 (A:) Plasmepsin (a hemoglobin-degrading enzyme) {Plasmodium vivax [TaxId: 5855]} Back     information, alignment and structure
>d1am5a_ b.50.1.2 (A:) Pepsin(ogen) {Atlantic cod (Gadus morhua) [TaxId: 8049]} Back     information, alignment and structure
>d1smra_ b.50.1.2 (A:) Chymosin (synonym: renin) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1mppa_ b.50.1.2 (A:) Pepsin {Mucor pusillus [TaxId: 4840]} Back     information, alignment and structure
>d1eaga_ b.50.1.2 (A:) Acid protease {Yeast (Candida albicans) [TaxId: 5476]} Back     information, alignment and structure
>d2qp8a1 b.50.1.2 (A:60-446) beta-secretase (memapsin) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1hrna_ b.50.1.2 (A:) Chymosin (synonym: renin) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1izea_ b.50.1.2 (A:) Acid protease {Fungus (Aspergillus oryzae) [TaxId: 5062]} Back     information, alignment and structure
>d1t6ex_ b.50.1.2 (X:) Xylanase inhibitor TAXI-I {Wheat (Triticum aestivum) [TaxId: 4565]} Back     information, alignment and structure
>d2bjua1 b.50.1.2 (A:1-329) Plasmepsin (a hemoglobin-degrading enzyme) {Plasmodium falciparum, plasmepsin II [TaxId: 5833]} Back     information, alignment and structure
>d1bxoa_ b.50.1.2 (A:) Acid protease {Fungus (Penicillium janthinellum), penicillopepsin [TaxId: 5079]} Back     information, alignment and structure
>d3cmsa_ b.50.1.2 (A:) Chymosin (synonym: renin) {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1wkra_ b.50.1.2 (A:) Acid protease {Irpex lacteus (Polyporus tulipiferae), Polyporopepsin [TaxId: 5319]} Back     information, alignment and structure
>d1qdma2 b.50.1.2 (A:2-247,A:248-338) Plant acid proteinase, phytepsin {Barley (Hordeum vulgare) [TaxId: 4513]} Back     information, alignment and structure