Citrus Sinensis ID: 008135

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570------
Protein Sequence
MRGKVRRRPTESALQPTPDLYGGNRFGGSRDSDASFASSRPSSIGMGRASAADLYTDRSHQSSAIRAINAHLSSHSFHIAFPLKQVPSVKDITDVIKFLISQLDYPSTTKFEEDLFVVLKSLSCPFKINKSTLRSPNSPHNWPAYLALIHWLVQIASYNYHLTTNSKAFVENNSMYMYASDSYLNYIEGKDGDVDNIDKGFIEKLEKEKENVSEYVEELKKKVSEMEGAMTGPTEREKLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRRELQAVERDIADAENARNEWESKTWDLDSKLGRKFKELEALSMECNQAMKRLKLATEIQYSLNSNGSTPSEVMGVDYKSTLKPALESFADDVKRSSVEKLEELISLQQQSSEMAAKIEGKRKRIDALQFHINEMETQLNLLSKETQEITKRCAEEAKKMEEDIQTEAHNLDMVEREAVEVLKASESKFQEAIRQCEEEIQIRALDLFALVDSVSKYKERMESKISKMNKGISETALTVSEAYKNSLPAQFSIAFGECTKHTST
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHcccccccccHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHccccHHHHHcHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHccccccccHHHHHHHHHHHcccccEEcHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEccccccHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEcccccccccc
Coil and Loop (DISEMBL)
mrgkvrrrptesalqptpdlyggnrfggsrdsdasfassrpssigmgrasaadlytdrshqsSAIRAINAhlsshsfhiafplkqvpsvkdITDVIKFLISqldypsttkfEEDLFVVLKSlscpfkinkstlrspnsphnwpAYLALIHWLVQIASYnyhlttnskafvENNSMYMYASDSYLnyiegkdgdvdniDKGFIEKLEKEKENVSEYVEELKKKVSEmegamtgpterekLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRRELQAVERDIADAENARNEWESKTWDLDSKLGRKFKELEALSMECNQAMKRLKLATEIQYSlnsngstpsevmgvdykstlKPALESFADDVKRSSVEKLEELISLQQQSSEMAAKIEGKRKRIDALQFHINEMETQLNLLSKETQEITKRCAEEAKKMEEDIQTEAHNLDMVEREAVEVLKASESKFQEAIRQCEEEIQIRALDLFALVDSVSKYKERMESKISKMNKGISETALTVSEAYknslpaqfsiafgectkhtst
Flexible Loop (DISEMBL)
mrgkvrrrptesalqptpdlyggnrfGGSRDSDASFASSRPSSIGMGRASAADLYTDRSHQSSAIRAINAHLSSHSFHIAFPLKQVPSVKDITDVIKFLISQLDYPSTTKFEEDLFVVLKSLSCPFKINkstlrspnspHNWPAYLALIHWLVQIASYNYHLTTNSKAFVENNSMYMYASDSYLNYIEGKDGDVDNIDKGFIEKLEKEKENVSEYVEELKKkvsemegamtgptereklekekCVLEEDLNKfnaiigelnmrkEKMEKLVEEKereigkkveehkriceeneefkkrvklqtinardverMRRELQAVERDiadaenarnewesktwdldskLGRKFKELEALSMECNQAMKRLKLATEIQYSLnsngstpsevMGVDYKSTLKPALESFADDVKRSSVEKLEELISLQQQSSEMAAKIEGKRKRIDALQFHINEMETqlnllsketQEITKRCAEEAKKMEEDIQTEAHNLDMVEREAVEVLKASESKFQEAIRQCEEEIQIRALDLFALVDSVSKYKERMeskiskmnkgiSETALTVSEAYKNSLPAQFSiafgectkhtst
Low Complexity Region (SEG)
MRGKVRRRPTESALQPTPDLYGGNRFGGsrdsdasfassrpssIGMGRASAADLYTDRSHQSSAIRAINAHLSSHSFHIAFPLKQVPSVKDITDVIKFLISQLDYPSTTKFEEDLFVVLKSLSCPFKINKSTLRSPNSPHNWPAYLALIHWLVQIASYNYHLTTNSKAFVENNSMYMYASDSYLNYIEGKDGDVDNIDKGFIEKLEKEKENVSEYVEELKKKVSEMEGAMTGPTereklekekcvleedlNKFNAIIGELNmrkekmeklveekereIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRRELQAVERDIADAENARNEWESKTWDLDSKLGRKFKELEALSMECNQAMKRLKLATEIQYSLNSNGSTPSEVMGVDYKSTLKPALESFADDVKRSSVEKLEELISLQQQSSEMAAKIEGKRKRIDALQFHINEMETQLNLLSKETQEITKRCAEEAKKMEEDIQTEAHNLDMVEREAVEVLKASESKFQEAIRQCEEEIQIRALDLFALVDSVSKYKERMESKISKMNKGISETALTVSEAYKNSLPAQFSIAFGECTKHTST
Disordered region (IsUnstruct)
****************************************************************IRAINAHLSSHSFHIAFPLKQVPSVKDITDVIKFLISQLDYPSTTKFEEDLFVVLKSLSCPFKINKSTLR***SPHNWPAYLALIHWLVQIASYNYHLTTNSKAFVENNSMYMYASDSYLNYIEGKDGDVDNIDKGFIE****************************************CVLEEDLNKFNAIIGEL*****************************************************************************W****************************************************************************************************ALQFHIN********************************************************QEAIRQCEEEIQIRALDLFALVDSVSK**************************Y***LPAQFSIAFG********
Disordered Region (DISOPRED)
*********************************************************RSHQSSAIRAINAHLSS*****************ITDVIKFLISQLDYPSTTKFEEDLFVVLKSLSCPFKINKSTLRSPNSPHNWPAYLALIHWLVQIASYNYHLTTNSKAFVENNSMYMYASDSYLNYIEGKDGDVDNIDKGFIE*************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************
Disordered Region (DISEMBL)
*************LQPTPDLYGGNRFGG*****************MGRASAADLYTDRSHQSSAIRAINAHLSSHSFHIAFPLKQVPSVKDITDVIKFLISQLDYPSTTKFEEDLFVVLKSLSCPFKINKSTLRSPNSPHNWPAYLALIHWLVQIASYNYHLTTNSKAFVENNSMYMYASDSYLNYIEGKDGDVDNIDKGFIEKLEKEKENVSEYVEELKKKVSEMEGAMTGPTEREKLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRRELQAVERDIADAENARNEWESKTWDLDSKLGRKFKELEALSMECNQAMKRLKLATEIQYSLNSNGSTPSEVMGVDYKSTLKPALESFADDVKRSSVEKLEELISLQQQSSEMAAKIEGKRKRIDALQFHINEMETQLNLLSKETQEITKRCAEEAKKMEEDIQTEAHNLDMVEREAVEVLKASESKFQEAIRQCEEEIQIRALDLFALVDSVSKYKERMESKISKMNKGISETALTVSEAYKNSLPAQFSIAFGECTKHTST
Disordered Region (DISPRO)
**************************************************AADLYTDRSHQSSAIRAINAHLSSHSFHIAFPLKQVPSVKDITDVIKFLISQLDYPSTTKFEEDLFVVLKSLSCPFKINKSTLRSPNSPHNWPAYLALIHWLVQIASYNYHLTTNSKAFVENNSMYMYASDSYLNYIEGKDGDVDNIDKGFIEKLEKEKENVSEYVEELKKKVSEMEGAMTGPTEREKLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRRELQAVERDIADAENARNEWESKTWDLDSKLGRKFKELEALSMECNQAMKRLKLATEIQYSLNSNGSTPSEVMGVDYKSTLKPALESFADDVKRSSVEKLEELISLQQQSSEMAAKIEGKRKRIDALQFHINEMETQLNLLSKETQEITKRCAEEAKKMEEDIQTEAHNLDMVEREAVEVLKASESKFQEAIRQCEEEIQIRALDLFALVDSVSKYKERMESKISKMNKGISETALTVSEAYKNSLPAQFSIAFGECT*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
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Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MRGKVRRRPTESALQPTPDLYGGNRFGGSRDSDASFASSRPSSIGMGRASAADLYTDRSHQSSAIRAINAHLSSHSFHIAFPLKQVPSVKDITDVIKFLISQLDYPSTTKFEEDLFVVLKSLSCPFKINKSTLRSPNSPHNWPAYLALIHWLVQIASYNYHLTTNSKAFVENNSMYMYASDSYLNYIEGKDGDVDNIDKGFxxxxxxxxxxxxxxxxxxxxxxxxxxxxMTGPTEREKLEKEKCVLEEDLNKFNAIxxxxxxxxxxxxxxxxxxxxxxxxxxxxHKRICEENEEFKKRVKLQTINARDxxxxxxxxxxxxxxxxxxxxxxxxxxxxTWDLDSKLGRKFKExxxxxxxxxxxxxxxxxxxxxQYSLNSNGSTPSEVMGVDYKSTLKPALESFADDVKRSSVEKLEELISLQQQSSEMAAKIEGKRKRxxxxxxxxxxxxxxxxxxxxxxxxxxxxCAEExxxxxxxxxxxxxxxxxxxxxAVEVLKASESKFQEAIRQCEEEIQIRALDLFALVDSVSKYKERMESKISKMNKGISETALTVSEAYKNSLPAQFSIAFGECTKHTST
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	576	2.2.26 [Sep-21-2011]
O14777	642	Kinetochore protein NDC80	yes	no	0.932	0.836	0.220	1e-19
Q4R630	642	Kinetochore protein NDC80	N/A	no	0.911	0.817	0.214	4e-19
Q9D0F1	642	Kinetochore protein NDC80	yes	no	0.901	0.808	0.219	8e-17
P0CP16	703	Probable kinetochore prot	yes	no	0.737	0.604	0.204	1e-15
Q8AWF5	638	Kinetochore protein NDC80	N/A	no	0.581	0.525	0.221	1e-15
Q76I89	640	Kinetochore protein NDC80	yes	no	0.904	0.814	0.211	2e-15
P0CP17	703	Probable kinetochore prot	N/A	no	0.737	0.604	0.204	2e-15
Q5U4X5	640	Kinetochore protein NDC80	yes	no	0.739	0.665	0.214	6e-15
Q10198	624	Kinetochore protein ndc80	yes	no	0.772	0.713	0.226	1e-14
Q5B3B1	738	Probable kinetochore prot	yes	no	0.598	0.467	0.235	3e-14

>sp|O14777|NDC80_HUMAN Kinetochore protein NDC80 homolog OS=Homo sapiens GN=NDC80 PE=1 SV=1

 Score = 98.6 bits (244), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 135/613 (22%), Positives = 263/613 (42%), Gaps = 76/613 (12%)

Query: 4   KVRRRPTESAL---QPTPD----LYGGNRFG-GSRDSDASFASSRPSSIGMGRASAADLY 55
           + + +PT   L   +PT +    L+G    G GSR+S     SS    I   R       
Sbjct: 33  QTKEKPTFGKLSINKPTSERKVSLFGKRTSGHGSRNSQLGIFSS-SEKIKDPRP-----L 86

Query: 56  TDRSHQSSAIRAINAHLSSHSFHIAFPLK--QVPSVKDITDVIKFLISQLDYPS----TT 109
            D++     IR +   L+ + +     +K  Q PSVKD   +  FL   L  PS     T
Sbjct: 87  NDKAFIQQCIRQLCEFLTENGYAHNVSMKSLQAPSVKDFLKIFTFLYGFL-CPSYELPDT 145

Query: 110 KFEEDLFVVLKSLSCPFKINKSTLRSPNSPHNWPAYLALIHWLVQIASYNYHLTTNSKAF 169
           KFEE++  + K L  PF ++KS++ +  +PH WP  +A + WL+     +  +  +S  F
Sbjct: 146 KFEEEVPRIFKDLGYPFALSKSSMYTVGAPHTWPHIVAALVWLIDCIKIHTAMKESSPLF 205

Query: 170 -------------VENNSMYM-YASDSYLNYIEGKDG-------------DVDNIDKGFI 202
                        + +N +++ Y    Y +++ G D              D+ N+D   +
Sbjct: 206 DDGQPWGEETEDGIMHNKLFLDYTIKCYESFMSGADSFDEMNAELQSKLKDLFNVDAFKL 265

Query: 203 EKLEKEKENVSEYVEELKKKVSEMEGAMTGPTEREKLEKEKCVLEEDLNKFNAIIGELNM 262
           E LE +   ++E +  L+++  E E     P   E L K K  L+ D+ K+ A +  L  
Sbjct: 266 ESLEAKNRALNEQIARLEQE-REKE-----PNRLESLRKLKASLQGDVQKYQAYMSNLES 319

Query: 263 RKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRRELQAVERD 322
               +++ +     EI +   E + I +EN   +  +  Q  +  D+ER+  E   +++ 
Sbjct: 320 HSAILDQKLNGLNEEIARVELECETIKQENTRLQNIIDNQKYSVADIERINHERNELQQT 379

Query: 323 IADAENARNEWESKTWDLDSKLGRKFKELEALSMECNQAMKRLKLATE-------IQYSL 375
           I          + K W+ + K  R  + +E    E ++  ++LKL  +         + +
Sbjct: 380 INKLTKDLEAEQQKLWNEELKYARGKEAIETQLAEYHKLARKLKLIPKGAENSKGYDFEI 439

Query: 376 NSNGSTPSEVMGVDYKSTLKPALESFADDVKRSSVEKLEELISLQQQSSEMAAKIEGKRK 435
             N    +  + V Y++ +   L+   ++ +    + L + + L+    ++ A I   ++
Sbjct: 440 KFNPEAGANCL-VKYRAQVYVPLKELLNETEEEINKALNKKMGLEDTLEQLNAMITESKR 498

Query: 436 RIDALQFHINEMETQLNLLSKETQEITKRCAEEAKKMEEDIQTEAHNLDMVEREAVEVLK 495
            +  L+  + +++       KE +E  ++CA E + +E+        ++    EA+  L 
Sbjct: 499 SVRTLKEEVQKLDDLYQQKIKEAEEEDEKCASELESLEKHKHLLESTVNQGLSEAMNELD 558

Query: 496 ASESKFQEAIRQCEEE-------IQIRALDLFAL-VDSVSKYKERMESKISK-----MNK 542
           A + ++Q  ++   EE       +Q R L++ A  V SV K+ E   +K+ +     M++
Sbjct: 559 AVQREYQLVVQTTTEERRKVGNNLQ-RLLEMVATHVGSVEKHLEEQIAKVDREYEECMSE 617

Query: 543 GISETALTVSEAY 555
            +SE    + + Y
Sbjct: 618 DLSENIKEIRDKY 630

Acts as a component of the essential kinetochore-associated NDC80 complex, which is required for chromosome segregation and spindle checkpoint activity. Required for kinetochore integrity and the organization of stable microtubule binding sites in the outer plate of the kinetochore.
Homo sapiens (taxid: 9606)

>sp|Q4R630|NDC80_MACFA Kinetochore protein NDC80 homolog OS=Macaca fascicularis GN=NDC80 PE=2 SV=1

 Score = 97.1 bits (240), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 127/591 (21%), Positives = 255/591 (43%), Gaps = 66/591 (11%)

Query: 4   KVRRRPTESAL---QPTPD----LYGGNRFG-GSRDSDASFASSRPSSIGMGRASAADLY 55
           + + RPT   L   +PT +    L+G    G GSR+S     SS    I   R       
Sbjct: 33  QTKERPTFGKLSINKPTSERKVSLFGKRTSGHGSRNSQLGIFSS-SEKIKDPRP-----L 86

Query: 56  TDRSHQSSAIRAINAHLSSHSFHIAFPLK--QVPSVKDITDVIKFLISQLDYPS----TT 109
            D++     IR +   L+ + +     +K  Q PSVKD   +  FL   L  PS     T
Sbjct: 87  NDKAFIQQCIRQLCEFLTENGYAHNVSMKSLQAPSVKDFLKIFTFLYGFL-CPSYELPDT 145

Query: 110 KFEEDLFVVLKSLSCPFKINKSTLRSPNSPHNWPAYLALIHWLVQIASYNYHLTTNSKAF 169
           KFEE++  + K L  PF ++KS++ +  +PH WP  +A + WL+     +  +  +S  F
Sbjct: 146 KFEEEVPRIFKDLGYPFALSKSSMYTVGAPHTWPHIVAALVWLIDCIKIHTAMKESSPLF 205

Query: 170 -------------VENNSMYM-YASDSYLNYIEGKDG-------------DVDNIDKGFI 202
                        + +N +++ Y    Y +++ G D              D+ N+D   +
Sbjct: 206 DDGQPWGEETEDGIMHNKLFLDYTIKCYESFMSGADSFDEMNAELQSKLKDLFNVDAFKL 265

Query: 203 EKLEKEKENVSEYVEELKKKVSEMEGAMTGPTEREKLEKEKCVLEEDLNKFNAIIGELNM 262
           E LE +   ++E +  L+++  E E     P   E L K K  L+ D+ K+ A +  L  
Sbjct: 266 ESLEAKNRALNEQIARLEQE-REKE-----PNRLESLRKLKASLQGDVQKYQAYMSNLES 319

Query: 263 RKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRRELQAVERD 322
               +++ +     EI +   E + I +EN   +  +  Q  +  D+ER+  E   +++ 
Sbjct: 320 HSAILDQKLNGLNEEIARVELECETIKQENTRLQNIIDNQKYSVADIERINHERNELQQT 379

Query: 323 IADAENARNEWESKTWDLDSKLGRKFKELEALSMECNQAMKRLKLATE-------IQYSL 375
           I          + K W+ + K  R  + +E    E ++  ++LKL  +         + +
Sbjct: 380 INKLTKDLEAEQQKLWNEELKYARGKEAIETQLAEYHKLARKLKLIPKGAENSKGYDFEI 439

Query: 376 NSNGSTPSEVMGVDYKSTLKPALESFADDVKRSSVEKLEELISLQQQSSEMAAKIEGKRK 435
             N    +  + V Y++ +   L+   ++ +    +   + + L+    ++ A I   ++
Sbjct: 440 KFNPEAGANCL-VKYRAQVYVPLKELLNETEEEINKARNKKMGLEDTLEQLNAMITESKR 498

Query: 436 RIDALQFHINEMETQLNLLSKETQEITKRCAEEAKKMEEDIQTEAHNLDMVEREAVEVLK 495
            +  L+  + +++       KE +E  ++CA E + +E+        ++    EA+  L 
Sbjct: 499 SVRTLKEEVQKLDDLYQQKIKEAEEEDEKCASELESLEKHKHLLESTVNQGLSEAMNELD 558

Query: 496 ASESKFQEAIRQCEEEIQIRALDLFALVDSVSKY----KERMESKISKMNK 542
           A + ++Q  ++   EE +    +L  L++ V+ +    ++ +E +I+K ++
Sbjct: 559 AVQREYQLVVQTTTEERRKVGNNLQRLLEMVATHVGSVEKHLEEQIAKADR 609

Acts as a component of the essential kinetochore-associated NDC80 complex, which is required for chromosome segregation and spindle checkpoint activity. Required for kinetochore integrity and the organization of stable microtubule binding sites in the outer plate of the kinetochore.

Macaca fascicularis (taxid: 9541)

>sp|Q9D0F1|NDC80_MOUSE Kinetochore protein NDC80 homolog OS=Mus musculus GN=Ndc80 PE=2 SV=1

 Score = 89.4 bits (220), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 135/614 (21%), Positives = 263/614 (42%), Gaps = 95/614 (15%)

Query: 12  SALQPTPD----LYGGNRFG-GSRDSDASFASSRPSSIGMGRASAADLYTDRSHQSSAIR 66
           S  +PT +    ++G    G GSR+S     SS    I   R        D++     IR
Sbjct: 44  STHKPTSERKVSIFGKRTSGHGSRNSQLGIFSS-SEKIKDPRP-----LNDKAFIQQCIR 97

Query: 67  AINAHLSSHSFHIAFPLK--QVPSVKDITDVIKFLISQLDYPS----TTKFEEDLFVVLK 120
            +   L+ + +  +  +K  Q PS K+   +  FL   L  PS     TK EE++  + K
Sbjct: 98  QLYEFLTENGYVYSVSMKSLQAPSTKEFLKIFAFLYGFL-CPSYELPGTKCEEEVPRIFK 156

Query: 121 SLSCPFKINKSTLRSPNSPHNWPAYLALIHWLVQIASYNYHLTTNSKAF----------- 169
           +L  PF ++KS++ +  +PH WP  +A + WL+     +  +  +S  F           
Sbjct: 157 ALGYPFTLSKSSMYTVGAPHTWPHIVAALVWLIDCIKIDTAMKESSPLFDDGQLWGEETE 216

Query: 170 --VENNSMYM-YASDSYLNYIEGKDG-------------DVDNIDKGFIEKLEKEKENVS 213
             +++N +++ Y    Y  ++ G D              D+  +D   +E LE E + ++
Sbjct: 217 DGIKHNKLFLEYTKKCYEKFMTGADSFEEEDAELQAKLKDLYKVDASKLESLEAENKALN 276

Query: 214 EYVEELKKKVSEMEGAMTGPTEREKLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEE 273
           E +  L+++          P     L+K K  L+ D+  + A +  L      +++    
Sbjct: 277 EQIARLEEERERE------PNRLMSLKKLKASLQADVQNYKAYMSNLESHLAVLKQKSNS 330

Query: 274 KEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRRELQAVERDIADAENARNEW 333
            + EIG+  +E + + +EN   +  V  Q  +  D+ER+  E   +++ I          
Sbjct: 331 LDEEIGRVEQECETVKQENTRLQSIVDNQKYSVADIERINHEKNELQQTINKLTKDLEAE 390

Query: 334 ESKTWDLDSKLGRKFKELEALSMECNQAMKRLKLATEIQYSLNSNGSTPSEVMGVDYKST 393
           + + W+ + K  R  + +EA   E ++  ++LKL  +        G+  S+  G D++  
Sbjct: 391 QQQMWNEELKYARGKEAIEAQLAEYHKLARKLKLIPK--------GAENSK--GYDFEIK 440

Query: 394 LKPALESFADDVKRSSVEKLEELISLQQQSSEMAAKIEGKRKRIDALQFHINEMETQ--- 450
             P  E+ A+ + +   +    L  L  +S E   K   K++ ++     +N M+T+   
Sbjct: 441 FNP--EAGANCLVKYRTQVYAPLKELLNESEEEINKALNKKRHLEDTLEQLNTMKTESKN 498

Query: 451 -LNLLSKETQEITKRCAEEAKKMEEDIQTEAHNLDMVER--------------EAVEVLK 495
            + +L +E Q++     +  K+ EE  +  A  L+ +E+              EA++ L 
Sbjct: 499 TVRMLKEEIQKLDDLHQQAVKEAEEKDKKSASELESLEKHKHLLESGVNDGLSEAMDELD 558

Query: 496 ASESKFQEAI-------RQCEEEIQIRALDLFAL-VDSVSKYKERMESKISK-----MNK 542
           A + ++Q  +       R+ E  +Q R L++ A  V S+ K+ E   +K  +     M++
Sbjct: 559 AVQREYQLTVKTTTEERRKVENNLQ-RLLEMVATHVGSLEKHLEEENAKADREYEEFMSE 617

Query: 543 GISETALTVSEAYK 556
            + E    ++E YK
Sbjct: 618 DLLENIREMAEKYK 631

Acts as a component of the essential kinetochore-associated NDC80 complex, which is required for chromosome segregation and spindle checkpoint activity. Required for kinetochore integrity and the organization of stable microtubule binding sites in the outer plate of the kinetochore.

Mus musculus (taxid: 10090)

>sp|P0CP16|NDC80_CRYNJ Probable kinetochore protein NDC80 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=NDC80 PE=3 SV=1

 Score = 85.5 bits (210), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 105/514 (20%), Positives = 221/514 (42%), Gaps = 89/514 (17%)

Query: 57  DRSHQSSAIRAINAHLSSHSFHIAFPLKQV--PSVKDITDVIKFLISQLDYPSTT---KF 111
           D+  QS+ +R +N +L S  + +    K +  P+ K+   + KFL++ L  P      KF
Sbjct: 140 DKVFQSNCMRNVNEYLISVRYPLPLTAKTLTSPTAKEFQSIFKFLVNDLVDPGAAWGKKF 199

Query: 112 EEDLFVVLKSLSCPF--KINKSTLRSPNSPHNWPAYLALIHWLVQI--ASYNYH------ 161
           E+D   +LK L  P    ++K+ L +P +P +WP  LA+++WLV +  A  N+       
Sbjct: 200 EDDTLSILKDLKYPGMDSVSKTALTAPGAPQSWPNMLAMLNWLVDLCKALDNWDDPEIIS 259

Query: 162 --LTTNSKAF------VENNSMYMYASDSYLNYIEGKDGDVDNIDKGF------------ 201
             L   +         +++  ++ +A+ +Y  + +G+  + D  ++              
Sbjct: 260 DPLMVPATELPLDYPNLDDRLLWDFAAKTYSQWFDGEAEEFDEAEQELEHAYGKSYSIVL 319

Query: 202 -----------------IEKLEKEKE---------NVSEYVEELKKKVSEMEGAMTGPTE 235
                             EKLE+E +         +V E    +  ++S  + +   P  
Sbjct: 320 NDTEQATDRMASATVAECEKLEREIQKRNVEIQQLHVQEVCSPITDRISFADKSYKPPL- 378

Query: 236 REKLEKEKCVLEEDLNKFNAIIGELNMRKEKME-KLVEEKEREIGKKVEEHKRICEENEE 294
            +KLE E   L  D NKF + + +   + EK+  ++ + KE  I ++ E   R  E    
Sbjct: 379 -KKLEDEYVQLMSDKNKFISFLDQQGQKIEKIRLRISKVKEAVISQEAELEARQSEL-AH 436

Query: 295 FKKRVKLQTINARDVERMRRELQAVERDIADAENARNEWESKTWDLDSKLGRKFKELEAL 354
            ++ V  Q ++  +V+RM  E  ++ R + D  N  +E     +D +  + +     E L
Sbjct: 437 IEQAVAAQNLSPDEVQRMNHERDSLTRSLEDLRNKISEASQFAYDQEMVVTKSMDRFEGL 496

Query: 355 SMECNQAMKRL----------KLATEIQYSLNSN-GSTPSE---VMGVDYKSTLKPALES 400
             + N    ++           LA  + Y+L+ + G+   E    +GV  +ST+  AL++
Sbjct: 497 LTDYNSLAHQIGLLDSSLDVPSLAANVNYNLDVDLGAEELEEVKAVGVRMRSTIWQALQT 556

Query: 401 FADDVKRSSVEKLEELISLQQQSSEMAAKIEGKRKRIDALQFHINEMETQLNLLSKETQE 460
             +  ++ ++      I+L+ +  ++   +E +++        +  +E +L ++  + ++
Sbjct: 557 CRETFRQEALGLGNGTIALEDEFDKLGQSVERQKE-------EVGNLEVRLKIVHNQAED 609

Query: 461 ITKRCAEE---AKKMEEDIQTEAHNLDMVEREAV 491
              + A E     K+   ++TE  N+    ++ V
Sbjct: 610 AQSQIASENSDTNKIITQLETEVTNMLAASQQGV 643

Acts as a component of the essential kinetochore-associated NDC80 complex, which is required for chromosome segregation and spindle checkpoint activity.

Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) (taxid: 214684)

>sp|Q8AWF5|NDC80_XENLA Kinetochore protein NDC80 homolog OS=Xenopus laevis GN=ndc80 PE=1 SV=2

 Score = 85.5 bits (210), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 83/375 (22%), Positives = 167/375 (44%), Gaps = 40/375 (10%)

Query: 26  FGGSRDSDASFASSRPSSIGMGRASAADL--YTDRSHQSSAIRAINAHLSSHSFHIAFPL 83
           F G R S+ +  +S+  + G G     D     D++     IR +   L+ + +  A  +
Sbjct: 55  FFGKRASNGTARTSQYGAFG-GTEKIKDPRPLHDKAFIQQCIRQLCEFLNENGYSQALTV 113

Query: 84  K--QVPSVKDITDVIKFLISQL--DYPST-TKFEEDLFVVLKSLSCPFKINKSTLRSPNS 138
           K  Q PS KD   +  F+ + +  +Y +  +KFEE++  + K L  PF ++KS++ +  +
Sbjct: 114 KSLQGPSTKDFLKIFAFIYTFICPNYENPESKFEEEIPRIFKELGYPFALSKSSMYTVGA 173

Query: 139 PHNWPAYLALIHWLVQIASYNYHLTTNSKAF------------VENNSMYM-YASDSYLN 185
           PH WP  +A + WL+        L + +  F            ++ N +++ Y    Y  
Sbjct: 174 PHTWPQIVAALVWLIDCVKLCCVLRSENPVFEDPPMGEQSENGIDFNQLFLDYTVRCYDQ 233

Query: 186 YIEGKDG----DVD---------NIDKGFIEKLEKEKENVSEYVEELKKKVSEMEGAMTG 232
           ++EG+D     D D         ++D+  +E L++E   + E +E L+K+          
Sbjct: 234 FMEGRDTFEEYDTDVCIRLKEAYHVDESNLEALQQESRRLMEEIERLEKEKE------NE 287

Query: 233 PTEREKLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEEN 292
           P     + K K  L+ D+ K+   + E+      +++ V     E+     E + I +EN
Sbjct: 288 PDRLASMRKLKASLQADIQKYQNYLTEIESHSTLLDQRVSSISEELEATELESRAIQQEN 347

Query: 293 EEFKKRVKLQTINARDVERMRRELQAVERDIADAENARNEWESKTWDLDSKLGRKFKELE 352
              K  +  Q  +  D+ER++ E   +++ IA      +E + + W  + K  +  + +E
Sbjct: 348 LRLKNILDNQKYSVADIERIKYEETELQQTIAKLTKDLDEDKQQLWHEELKYAKMKESVE 407

Query: 353 ALSMECNQAMKRLKL 367
               E ++  ++++L
Sbjct: 408 TQLSEFHKIGRKVRL 422

Acts as a component of the essential kinetochore-associated NDC80 complex, which is required for chromosome segregation and spindle checkpoint activity.

Xenopus laevis (taxid: 8355)

>sp|Q76I89|NDC80_CHICK Kinetochore protein NDC80 homolog OS=Gallus gallus GN=NDC80 PE=1 SV=1

 Score = 84.7 bits (208), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 124/586 (21%), Positives = 243/586 (41%), Gaps = 65/586 (11%)

Query: 26  FGGSRDSDASFASSRPSSIGM-GRASAADL--YTDRSHQSSAIRAINAHLSSHSFHIAFP 82
           F G R S A    SR S  GM G     D     D++     I+ +   L  + +     
Sbjct: 59  FFGKRASGA--GGSRNSQYGMFGTEKIKDPRPLHDKAFIQQCIKQLCEFLVENGYAHNVT 116

Query: 83  LK--QVPSVKDITDVIKFLISQLDYPS----TTKFEEDLFVVLKSLSCPFKINKSTLRSP 136
           +K  Q PSVKD   +  F+   L  PS     +KFEE++  V K L  PF ++KS++ + 
Sbjct: 117 IKSLQSPSVKDFIKIFTFIYGFL-CPSYELPDSKFEEEIPRVFKELGYPFPLSKSSMYTV 175

Query: 137 NSPHNWPAYLALIHWLVQIASYNYHLTTNSKAF-------------VENNSMYM-YASDS 182
            +PH WP  +A + WL         +  N  +F             + +N ++M Y    
Sbjct: 176 GAPHTWPQIVAALIWLTDCFKLYAAMRENPSSFDDGQNWGGETDDGIVHNKLFMDYVVKC 235

Query: 183 YLNYIEGKDG-------------DVDNIDKGFIEKLEKEKENVSEYVEELKKKVSEMEGA 229
           Y ++++G D              D+ N+D+  IE L  E + + E +  L+K+       
Sbjct: 236 YEHFMKGGDTYEELDAEVQSKLKDLFNVDEFKIEGLAAENKRLHEEIARLEKERE----- 290

Query: 230 MTGPTEREKLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRIC 289
            + P     L K +   + D+ K+ A +  L      +++ ++    E+     E + + 
Sbjct: 291 -SEPDRLVSLRKLRSSFQADVQKYQAYLANLESHTTILDQKMKSVNEEVETTEMEVEAMK 349

Query: 290 EENEEFKKRVKLQTINARDVERMRRELQAVERDIADAENARNEWESKTWDLDSKLGRKFK 349
           +EN   +     Q  +  D+ER+  E   +++ I          E + W+ + K  R  +
Sbjct: 350 QENARLQHIFDNQKYSVADIERINHERNELQQTINKLTKELEAEEHQLWNEELKYARNKE 409

Query: 350 ELEALSMECNQAMKRLKL-------ATEIQYSLNSNGSTPSEVMGVDYKSTLKPALESFA 402
            +E    E ++  ++LKL       +    + ++ N       + V Y++ +K  L    
Sbjct: 410 AIETQLAEYHKLARKLKLIPISAENSKGHDFEIHFNPEAGPNCL-VKYRTQIKAPLMEIV 468

Query: 403 DDVKRSSVEKLEELISLQQQSSEMAAKIEGKRKRIDALQFHINEMETQLNLLSKETQEIT 462
           +  +    +  +  +SL+    ++ A +  K+  +  L+    +++   +   KE +E  
Sbjct: 469 NQTEEEIRKATQRKMSLEDTLEQVNAMVAEKKSSVKTLKEEAEKLDDLYHQKLKEAEEEE 528

Query: 463 KRCAEEAKKMEEDIQTEAHNLDMVEREAVEVLKASESKFQEAIRQCEEEIQIRALDLFAL 522
           ++CA E + +E+  Q     ++    EA   L   + ++Q  ++   EE +    +L  L
Sbjct: 529 QKCANELELLEKHKQLLESGVNEGLSEATNELHDIQRQYQIVMQTTTEESRKAGDNLNRL 588

Query: 523 VD-------SVSKYKERMESKISK-----MNKGISETALTVSEAYK 556
           ++       S+ KY +   SKI +     M++ +  T   + ++YK
Sbjct: 589 LEVITTHVVSIEKYLDEQNSKIDRDYEEFMSEDLLSTLTGILDSYK 634

Acts as a component of the essential kinetochore-associated NDC80 complex, which is required for chromosome segregation and spindle checkpoint activity.

Gallus gallus (taxid: 9031)

>sp|P0CP17|NDC80_CRYNB Probable kinetochore protein NDC80 OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) GN=NDC80 PE=3 SV=1

 Score = 84.3 bits (207), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 105/514 (20%), Positives = 221/514 (42%), Gaps = 89/514 (17%)

Query: 57  DRSHQSSAIRAINAHLSSHSFHIAFPLKQV--PSVKDITDVIKFLISQLDYPSTT---KF 111
           D+  QS+ +R +N +L S  + +    K +  P+ K+   + KFL++ L  P      KF
Sbjct: 140 DKVFQSNCMRNVNEYLISVRYPLPLTAKTLTSPTAKEFQSIFKFLVNDLVDPGAAWGKKF 199

Query: 112 EEDLFVVLKSLSCPF--KINKSTLRSPNSPHNWPAYLALIHWLVQI--ASYNYH------ 161
           E+D   +LK L  P    ++K+ L +P +P +WP  LA+++WLV +  A  N+       
Sbjct: 200 EDDTLSILKDLKYPGMDSVSKTALTAPGAPQSWPNMLAMLNWLVDLCKALDNWDDPEIIS 259

Query: 162 --LTTNSKAF------VENNSMYMYASDSYLNYIEGKDGDVDNIDKGF------------ 201
             L   +         +++  ++ +A+ +Y  + +G+  + D  ++              
Sbjct: 260 DPLMVPATELPLDYPNLDDRLLWDFAAKTYSQWFDGEAEEFDEAEQELEHAYGKSYSIVL 319

Query: 202 -----------------IEKLEKEKE---------NVSEYVEELKKKVSEMEGAMTGPTE 235
                             EKLE+E +         +V E    +  ++S  + +   P  
Sbjct: 320 NDTEQATDRMASATVAECEKLEREIQKRNVEIQQLHVQEVCSPITDRISFADKSYKPPL- 378

Query: 236 REKLEKEKCVLEEDLNKFNAIIGELNMRKEKME-KLVEEKEREIGKKVEEHKRICEENEE 294
            +KLE E   L  D NKF + + +   + EK+  ++ + KE  I ++ E   R  E    
Sbjct: 379 -KKLEDEYVQLMSDKNKFISFLDQQGQKIEKIRLRISKVKEAVISQEAELEARQSEL-AH 436

Query: 295 FKKRVKLQTINARDVERMRRELQAVERDIADAENARNEWESKTWDLDSKLGRKFKELEAL 354
            ++ V  Q ++  +V+RM  E  ++ R + D  N  +E     +D +  + +     E L
Sbjct: 437 IEQAVAAQNLSPDEVQRMNHERDSLTRSLEDLRNKISEASQFAYDQEMVVTKSMDRFEGL 496

Query: 355 SMECNQAMKRL----------KLATEIQYSLNSN-GSTPSE---VMGVDYKSTLKPALES 400
             + N    ++           LA  + Y+L+ + G+   E    +GV  +ST+  AL++
Sbjct: 497 LTDYNSLAHQIGLLDFSLDVPSLAANVNYNLDVDLGAEELEEVKAVGVRMRSTIWQALQT 556

Query: 401 FADDVKRSSVEKLEELISLQQQSSEMAAKIEGKRKRIDALQFHINEMETQLNLLSKETQE 460
             +  ++ ++      I+L+ +  ++   +E +++        +  +E +L ++  + ++
Sbjct: 557 CREMFRQEALGLGNGTIALEDEFDKLGQSVERQKE-------EVGNLEVRLKIVHNQAED 609

Query: 461 ITKRCAEE---AKKMEEDIQTEAHNLDMVEREAV 491
              + A E     K+   ++TE  N+    ++ V
Sbjct: 610 AQSQIASENSDTNKIITQLETEVTNMLAASQQGV 643

Acts as a component of the essential kinetochore-associated NDC80 complex, which is required for chromosome segregation and spindle checkpoint activity.

Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) (taxid: 283643)

>sp|Q5U4X5|NDC80_XENTR Kinetochore protein NDC80 homolog OS=Xenopus tropicalis GN=ndc80 PE=2 SV=1

 Score = 82.8 bits (203), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 104/485 (21%), Positives = 209/485 (43%), Gaps = 59/485 (12%)

Query: 26  FGGSRDSDASFASSRPSSIGMGRASAADL--YTDRSHQSSAIRAINAHLSSHSFHIAFPL 83
           F G R S+ +  +S+  + G G     D     D++     IR +   L+ + +     +
Sbjct: 55  FFGKRMSNGTARTSQYGAFG-GTEKIKDPRPLHDKAFIQQCIRQLCEFLNENGYSQTLTV 113

Query: 84  K--QVPSVKDITDVIKFLISQL--DYPST-TKFEEDLFVVLKSLSCPFKINKSTLRSPNS 138
           K  Q PS KD   +  F+ + +  +Y +  +KFEE++  + K L  PF ++KS++ +  +
Sbjct: 114 KSLQGPSTKDFLKIFAFIYTFICPNYENPESKFEEEIPRIFKELGYPFALSKSSMYTVGA 173

Query: 139 PHNWPAYLALIHWLVQIASYNYHLTTNSKAF------------VENNSMYM-YASDSYLN 185
           PH WP  +A + WL+        L + +  F            ++ N +++ Y    Y  
Sbjct: 174 PHTWPQIVAALVWLIDCVKLCCVLRSENPVFEEPQMGEQSENGIDFNQLFLDYTVRCYDQ 233

Query: 186 YIEGKDG----DVD---------NIDKGFIEKLEKEKENVSEYVEELKKKVSEMEGAMTG 232
           ++EG+D     D D         ++D+  +E L++E   + E +E L+K+          
Sbjct: 234 FMEGRDTFEEYDADMCIRLKEAYHVDESNLEALQQESRRLLEEIERLEKEKE------NE 287

Query: 233 PTEREKLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEEN 292
           P     + K K  L+ D+ K+   + E+      +E+ V     ++     E + + +EN
Sbjct: 288 PDRLASMRKLKVSLQADIQKYQNYLTEIESHSTLLEQRVSSVSEDLEATELESRAVQQEN 347

Query: 293 EEFKKRVKLQTINARDVERMRRELQAVERDIADAENARNEWESKTWDLDSKLGRKFKELE 352
              K  +  Q  +  D+ER++ E   +++ IA      +E + + W  + K  +  + +E
Sbjct: 348 LRLKNILDNQKYSVADIERIKYEENELQQTIAKLTKDLDEDKQQLWSEELKYAKMKESVE 407

Query: 353 ALSMECNQAMKRLKLATEIQYSLNSNGSTPSEVMGVDYKSTLKPALESFADDVKRSSVEK 412
               E ++  ++++L              P+      Y   ++  L+S     ++SS+  
Sbjct: 408 TQLSEFHKIGRKVRLI------------PPTAEYANGYDFQIQCNLDS-----EQSSLIH 450

Query: 413 LEELISLQQQSSEMAAKIEGKRKRIDALQFHINEMETQLNLLSKETQEITKRCAEEAKKM 472
               I++     E+ ++ EG+       +  + +M  QLN L  E +   K   +EA+K+
Sbjct: 451 YRNKINV--PLVEILSQSEGQIAGATNKKMGVEDMVEQLNTLIGEKKNEVKVQKDEAQKL 508

Query: 473 EEDIQ 477
           EE  Q
Sbjct: 509 EETYQ 513

Acts as a component of the essential kinetochore-associated NDC80 complex, which is required for chromosome segregation and spindle checkpoint activity.

Xenopus tropicalis (taxid: 8364)

>sp|Q10198|NDC80_SCHPO Kinetochore protein ndc80 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ndc80 PE=1 SV=1

 Score = 82.0 bits (201), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 115/507 (22%), Positives = 223/507 (43%), Gaps = 62/507 (12%)

Query: 13  ALQPT--PDLYGGNRFGGSRDSDASFASSRP--SSIGMGRASAADLYTDRSHQSSAIRAI 68
            L PT  P L    R    R S+ASF S  P  +SI   R     L   R  Q  A + +
Sbjct: 59  VLTPTMRPSLAPNTRRSSVRVSNASFISQTPNITSIKDPRP----LSDRRYQQECATQVV 114

Query: 69  NAHL-SSHSFHIAFPLKQVPSVKDITDVIKFLISQLD--YPSTTKFEEDLFVVLKSLSCP 125
           N  L S  S  +    + +PS ++   + K L ++LD  +    ++EED+   LK+L+ P
Sbjct: 115 NYLLESGFSQPLGLNNRFMPSTREFAAIFKHLYNKLDPNFRFGARYEEDVTTCLKALNYP 174

Query: 126 F--KINKSTLRSPNSPHNWPAYLALIHWLVQI-------ASYNYHLTTNS-KAFVENNSM 175
           F   I++S L +  SPH WPA L ++HW+V +        +  Y +  NS    + +  +
Sbjct: 175 FLDSISRSRLVAIGSPHVWPAILGMLHWVVSLIQCTEKAVAMVYTVEQNSLDDHLVDKVL 234

Query: 176 YMYASDSYLNYIEGKD----------GDVDNIDKGFIEKLEKEKENVSEYVEELKKKVSE 225
           + Y   +Y  Y++                +  ++    + E  K    E + ++K    E
Sbjct: 235 FDYLVRTYHLYLDESPEESEPEKELKATFNQQNQDLYNQTEALKSTNEELINQIKS-AEE 293

Query: 226 MEGAMTGPTEREKLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEH 285
           ++ A+      + LE+    ++ D  KF + +  +  + E    L+++ +  I +K  + 
Sbjct: 294 LDSAI------QVLEERYRTMQRDEVKFQSAMSGMKSKMESRTNLMKQLQVNIEEKESQL 347

Query: 286 KRICEENEEFKKRVKLQTINARDVERMRRELQAVERDIADAENARNEWESKTWDLDSKLG 345
           + + E+ +  K +V+ Q I+  + E+M  E + ++R++    +  +E   + +D D  + 
Sbjct: 348 QLLKEKRDSLKYQVENQDISISEFEKMVSEREQLDRNLNMIGSKISELRKEVFDTDLLIQ 407

Query: 346 RKFKELEALSMECNQAMKRLKL-------ATEIQYSLNSNGSTPSEVMGVDYKSTLKPAL 398
                LE    + N    R+ +       +    + L  N   P+ +  +D K+ ++P  
Sbjct: 408 ASIDSLEKKVQKFNSLAYRIGIVPIAAIRSANNDFELEINPEGPNYI-NLDLKNKVRP-- 464

Query: 399 ESFADDVKRS-SVEKLEELISLQQQSSEMAAKIEGKRKRIDALQFHINEMETQL------ 451
             F ++V+RS ++E  EE    Q +S ++   ++     I  LQ  +  +E++L      
Sbjct: 465 --FINEVRRSITLEFHEE----QNKSLKLQEHVDTVNDLIAELQDELRGIESRLTSVLSE 518

Query: 452 -NLLSKETQEITKRCAEEAKKMEEDIQ 477
            N+L +   E       E+ K+E ++Q
Sbjct: 519 CNMLRETASEEKNAFDAESDKLERELQ 545

Acts as a component of the NMS (Ndc80-MIND-Spc7) super complex which has a role in kinetochore function during late meiotic prophase and throughout the mitotic cell cycle. Acts as a component of the essential kinetochore-associated NDC80 complex, which is required for chromosome segregation and spindle checkpoint activity.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q5B3B1|NDC80_EMENI Probable kinetochore protein ndc80 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=ndc80 PE=3 SV=1

 Score = 80.9 bits (198), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 91/386 (23%), Positives = 175/386 (45%), Gaps = 41/386 (10%)

Query: 3   GKVRRRPTESALQPTPDLYGGNRFGGSRDSDASFASSRPSSIGMGRASAADLYTDRSHQS 62
           G +   P   +LQ    ++     GG+     SF +  PS+ G+ R        DRS Q+
Sbjct: 107 GSMSSNPASQSLQRRSSVFSRPSTGGAM-GHQSFFTQVPSAAGVPRDPRP--LRDRSFQA 163

Query: 63  SAIRAINAHLSSHSFHIAF--PLKQ----VPSVKDITDVIKFLISQLD--YPSTTKFEED 114
              + +  +L+ ++F +     L Q     P+ KD   + ++L  ++D  Y      + +
Sbjct: 164 RIAQELLEYLTHNNFELEMKHSLGQNTLRSPTQKDFNYIFQWLYHRIDPGYRFQKAMDAE 223

Query: 115 LFVVLKSLSCPFK--INKSTLRSPNSPHNWPAYLALIHWLVQIASY--NYHLTTNSKAFV 170
           +  +LK L  P++  I KS + +     NWP +L ++HWL+++A     + +    +A  
Sbjct: 224 VPPILKQLRYPYEKGITKSQIAAVGG-QNWPTFLGMLHWLMELAQMMDRFAMGEYDEACA 282

Query: 171 E-------NNSMYMYASDSYLNYIEGKDGDVDNIDK----GFIEKLEKEKENVSE-YVEE 218
           E       +  ++ + + +Y ++++G + + D+         IE + +E E  +E YV+E
Sbjct: 283 EMGVDVSGDRIIFRFLTGAYHDWLQGGEEEDDDAAAQRLIPHIELMAQEFEKGNEKYVQE 342

Query: 219 ----------LKKKVSEMEGAMTGPTEREKLEKEKCVLEEDLNKFNAIIGELNMRKEKME 268
                     L+ ++ E+E       +  KL+K+  +LE+D  KF   I  +  + EK E
Sbjct: 343 MQVLDAENRALRDQIEELE---KNAPDMAKLDKQFRILEDDKRKFEDYIQNVQGKIEKYE 399

Query: 269 KLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRRELQAVERDIADAEN 328
             +   E EI K   E +   EE    +  V  Q +  +D++RM  E   ++R + DA +
Sbjct: 400 SRIAFLEDEIRKTESELQAAEEERAGLQASVDQQGLTIQDIDRMNTERDRLQRSLDDAVS 459

Query: 329 ARNEWESKTWDLDSKLGRKFKELEAL 354
              E  ++    +S+   K ++LE L
Sbjct: 460 RLEETHARVMAKESEASAKLEDLEEL 485

Acts as a component of the essential kinetochore-associated NDC80 complex, which is required for chromosome segregation and spindle checkpoint activity.

Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) (taxid: 227321)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	576
255587682	574	hec1 protein, putative [Ricinus communis	0.975	0.979	0.629	0.0
224054294	573	predicted protein [Populus trichocarpa]	0.968	0.973	0.604	0.0
225448101	571	PREDICTED: kinetochore protein NDC80 hom	0.972	0.980	0.588	0.0
225455018	571	PREDICTED: kinetochore protein NDC80 hom	0.972	0.980	0.583	1e-179
147771819	735	hypothetical protein VITISV_035303 [Viti	0.972	0.761	0.581	1e-177
359486113	571	PREDICTED: LOW QUALITY PROTEIN: kinetoch	0.925	0.933	0.573	1e-174
359486104	627	PREDICTED: LOW QUALITY PROTEIN: kinetoch	0.927	0.851	0.581	1e-170
359486098	552	PREDICTED: LOW QUALITY PROTEIN: kinetoch	0.942	0.983	0.543	1e-166
147765579	1261	hypothetical protein VITISV_041326 [Viti	0.883	0.403	0.568	1e-160
298204607	509	unnamed protein product [Vitis vinifera]	0.871	0.986	0.538	1e-155

>gi|255587682|ref|XP_002534355.1| hec1 protein, putative [Ricinus communis] gi|223525439|gb|EEF28028.1| hec1 protein, putative [Ricinus communis]

 Score =  696 bits (1796), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 359/570 (62%), Positives = 442/570 (77%), Gaps = 8/570 (1%)

Query: 1   MRGK-VRRRPTESALQPTPDLYGGNRFGGSRDSDASFASSRPSSIGMGRASAADLYTDRS 59
           MRG   RRRPTES +   P     +R   SRDSDASFASSRPS+IG+GR+S  +LYTDR 
Sbjct: 1   MRGNNTRRRPTESLIPQQPPPPDHHRQFTSRDSDASFASSRPSTIGVGRSS--ELYTDRG 58

Query: 60  HQSSAIRAINAHLSSHSFHIAFPLKQVPSVKDITDVIKFLISQLDYPSTTKFEEDLFVVL 119
           HQ+SA+RAIN +LSSHS  ++     + S KDIT+V++FL+ QLDYP TTK E+DLF++L
Sbjct: 59  HQNSAVRAINTYLSSHSSSLSLRTHPISSAKDITEVLQFLLHQLDYP-TTKLEDDLFLIL 117

Query: 120 KSLSCPFKINKSTLRSPNSPHNWPAYLALIHWLVQIASYNYHLTTNSKAFVENNSMYMYA 179
           K L+CPFK++KS LR+PN+PHNWP++LALIHWLVQIA +  HL  NS+AFVENN+M +YA
Sbjct: 118 KFLNCPFKVSKSALRAPNTPHNWPSFLALIHWLVQIAMFEEHLAVNSRAFVENNTMLVYA 177

Query: 180 SDSYLNYIEGKDGDVDNIDKGFIEKLEKEKENVSEYVEELKKKVSEME----GAMTGPTE 235
            DSYL+YI G D  VD +D+ F+EKLEKE+E+V E V  L++   E+E    G  TGPTE
Sbjct: 178 LDSYLSYIRGDDDSVDALDREFMEKLEKERESVVESVRVLEENFKELEAKAEGLKTGPTE 237

Query: 236 REKLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEF 295
           REKLE  + VLEED+NKFNAII E N R E ++K++ EK  E+  KVEE KRI  ENE+ 
Sbjct: 238 REKLENLRNVLEEDVNKFNAIIAEFNSRIEGLDKVLVEKRNELETKVEERKRIDLENEDL 297

Query: 296 KKRVKLQTINARDVERMRRELQAVERDIADAENARNEWESKTWDLDSKLGRKFKELEALS 355
           KKRV+ Q+ NARD ERM+RELQAVER+I DAE+ARN WE K WDL++++G K+KELE LS
Sbjct: 298 KKRVEEQSFNARDAERMKRELQAVERNIGDAESARNSWEEKIWDLNTEIGHKYKELETLS 357

Query: 356 MECNQAMKRLKLATEIQYSLNSNGSTPSEVMGVDYKSTLKPALESFADDVKRSSVEKLEE 415
           M+CNQA++RLKL    QY LN+ GSTP+EVMGVDYKS +KP L SFADDVKRSS+ KLEE
Sbjct: 358 MDCNQAVRRLKLGNGFQYLLNAKGSTPTEVMGVDYKSVVKPGLASFADDVKRSSMAKLEE 417

Query: 416 LISLQQQSSEMAAKIEGKRKRIDALQFHINEMETQLNLLSKETQEITKRCAEEAKKMEED 475
            ISLQQ SSE  AK EGK+ RI ALQ HI+E+E +L LL  E +E TKRCA EA+K+ ED
Sbjct: 418 FISLQQGSSEFTAKTEGKKNRIAALQSHIDEVEARLILLQNEMEEYTKRCAVEAQKLLED 477

Query: 476 IQTEAHNLDMVEREAVEVLKASESKFQEAIRQCEEEIQIRALDLFALVDSVSKYKERMES 535
           +Q EAHNL ++EREA E+LKASE K QEA +Q EEEIQ +A DLFA+VD+VSKYKE MES
Sbjct: 478 VQEEAHNLGILEREAGEILKASELKLQEATKQSEEEIQKKARDLFAVVDTVSKYKEHMES 537

Query: 536 KISKMNKGISETALTVSEAYKNSLPAQFSI 565
           KIS+M   +SETA  VS+AYK+ LPAQF I
Sbjct: 538 KISEMKNKLSETAAAVSDAYKHFLPAQFGI 567

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224054294|ref|XP_002298188.1| predicted protein [Populus trichocarpa] gi|222845446|gb|EEE82993.1| predicted protein [Populus trichocarpa]

 Score =  669 bits (1727), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 347/574 (60%), Positives = 427/574 (74%), Gaps = 16/574 (2%)

Query: 1   MRGKVRRRPTES-ALQPTPD----LYGGNRFGGSRDSDASFASSRPSSIGMGRASAADLY 55
           MRG   RRPT S   QPTPD     Y  N    SRDSDASFASSRPSSIG+GR   AD Y
Sbjct: 1   MRGASHRRPTNSFNPQPTPDHHRHQYANN---TSRDSDASFASSRPSSIGVGRT--ADPY 55

Query: 56  TDRSHQSSAIRAINAHLSSHSFHIAFPLKQVPSVKDITDVIKFLISQLDYPSTTKFEEDL 115
           T+++HQ+SAIRAINA+LSSHS  +  P    PS KDIT+ +K+L+ QLDY ST K E+DL
Sbjct: 56  TEKAHQASAIRAINAYLSSHSSKL-LPPNSTPSGKDITETLKYLLHQLDYEST-KLEDDL 113

Query: 116 FVVLKSLSCPFKINKSTLRSPNSPHNWPAYLALIHWLVQIASYNYHLTTNSKAFVENNSM 175
             +LKSL+CPFK NKSTLR+PN+PHNWP+Y+A+IHWLVQ+A Y   L   + + VENNSM
Sbjct: 114 ASILKSLNCPFKFNKSTLRAPNTPHNWPSYVAIIHWLVQLAMYREDLAAKTGSLVENNSM 173

Query: 176 YMYASDSYLNYIEGKDGDVDNIDKGFIEKLEKEKENVSEYVEELKKKVSEMEGAM----T 231
           +MYA DSYLNYI G D  V  +D  F+ KL KE+E+V E V  L+  + E E        
Sbjct: 174 FMYALDSYLNYIRGNDDSVLELDNEFMGKLGKERESVLENVRVLEASLKETEAKAEALRA 233

Query: 232 GPTEREKLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEE 291
           GPTERE+LEKE+ VLEED+ KF+A+IGE     E +EK +EEK +E+  KVEE K++ EE
Sbjct: 234 GPTERERLEKERSVLEEDVKKFHAMIGEFTQGIEVLEKGLEEKRKEMETKVEEKKKLDEE 293

Query: 292 NEEFKKRVKLQTINARDVERMRRELQAVERDIADAENARNEWESKTWDLDSKLGRKFKEL 351
           N+E KKRV+ Q+ N RD ERM+RELQ V+RDI +AE +RN WE K WDLD+ +  KFKE+
Sbjct: 294 NDELKKRVEEQSFNPRDAERMKRELQVVDRDIVEAEASRNAWEEKMWDLDATIAHKFKEI 353

Query: 352 EALSMECNQAMKRLKLATEIQYSLNSNGSTPSEVMGVDYKSTLKPALESFADDVKRSSVE 411
           EAL+MECNQA +RLKL    QY  N+NGST +E+MG+DYK+T+KP LESFA  VK SS+ 
Sbjct: 354 EALAMECNQATRRLKLGNGYQYVPNANGSTAAEIMGLDYKTTIKPGLESFAAAVKGSSMA 413

Query: 412 KLEELISLQQQSSEMAAKIEGKRKRIDALQFHINEMETQLNLLSKETQEITKRCAEEAKK 471
           KLEELI LQ+QSSE+AAKIEGKR R   LQ HI+EME QLNL  KET++ T RCA EAKK
Sbjct: 414 KLEELILLQKQSSELAAKIEGKRNRTSTLQSHIDEMEAQLNLSRKETEDSTSRCAAEAKK 473

Query: 472 MEEDIQTEAHNLDMVEREAVEVLKASESKFQEAIRQCEEEIQIRALDLFALVDSVSKYKE 531
           + ED+Q EAHNLD++EREA E+LKA+E K QEAI+  EEEIQ++A++L ALVDSVSK KE
Sbjct: 474 LVEDVQIEAHNLDVLEREAAEILKAAEQKLQEAIKTSEEEIQMQAVELLALVDSVSKCKE 533

Query: 532 RMESKISKMNKGISETALTVSEAYKNSLPAQFSI 565
           ++ESKIS+    +SET + VS AYK SL AQF I
Sbjct: 534 QIESKISESKIKLSETVVAVSNAYKGSLSAQFGI 567

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225448101|ref|XP_002273942.1| PREDICTED: kinetochore protein NDC80 homolog [Vitis vinifera]

 Score =  640 bits (1650), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 338/574 (58%), Positives = 434/574 (75%), Gaps = 14/574 (2%)

Query: 1   MRGKVRRRPTESALQPTPDLYGGNRFGG-SRDSDASFASSRPSSIGMGRASAADLYTDRS 59
           M+   RRRP +S   P P     +     SRDSDASFASSRPSS+G+ R+SA D  TDRS
Sbjct: 1   MKATGRRRPKDSIRPPPPPAPSVDHHRQFSRDSDASFASSRPSSLGINRSSAGDALTDRS 60

Query: 60  HQSSAIRAINAHLSSHSFHIAF--PLKQVPSVKDITDVIKFLISQLDYPSTTKFEEDLFV 117
           +Q SAIR IN+ L+SHS  ++   PL   PS KDI++ +KFLISQLD+P TTK E+DL +
Sbjct: 61  YQLSAIRTINSFLASHSSPLSLKPPL---PSAKDISETLKFLISQLDFP-TTKLEDDLPI 116

Query: 118 VLKSLSCPFKINKSTLRSPNSPHNWPAYLALIHWLVQIASYNYHLTTNSKAFVENNSMYM 177
           +LK L+CP K+NKS L++P +PH WP  L ++HWLVQIA YN HL +N + F   ++ ++
Sbjct: 117 LLKHLNCPIKLNKSALKAPGTPHAWPPLLGVMHWLVQIALYNDHLVSNLQCF---DNTFV 173

Query: 178 YASDSYLNYIEGKDGDVDNIDKGFIEKLEKEKENVSEYVEELKKKVSEMEGAM----TGP 233
           YA DSYL+YI G D  ++ +D+ F+ KLEKE++ V+E V+ L+K+V+E EG +    +GP
Sbjct: 174 YALDSYLHYIRGDDDGMEAVDREFMGKLEKERDAVAEGVKALEKEVAEREGRLEELRSGP 233

Query: 234 TEREKLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENE 293
           + +E +EK + VLEED+ KF+AII E + R   +EK++EEKE+E+G KVEE+ RICEENE
Sbjct: 234 SAKEVVEKVRGVLEEDVKKFHAIIAEFSGRIASVEKILEEKEKELGVKVEENNRICEENE 293

Query: 294 EFKKRVKLQTINARDVERMRRELQAVERDIADAENARNEWESKTWDLDSKLGRKFKELEA 353
           E KKRV+LQT NARD ERM+RELQAVERDI +AE ARN WE K+WDLD+ +G KFKELEA
Sbjct: 294 ELKKRVELQTFNARDAERMKRELQAVERDITEAEVARNGWEEKSWDLDTTIGHKFKELEA 353

Query: 354 LSMECNQAMKRLKLATEIQYSLNSNGSTPSEVMGVDYKSTLKPALESFADDVKRSSVEKL 413
           LS+ECNQA++RLKL   +QY LN+ GS+P+EV+G+DYKS LKPAL+SFADD+ +SS+ KL
Sbjct: 354 LSIECNQALRRLKLGNGLQYVLNAKGSSPTEVLGIDYKSALKPALDSFADDINKSSMSKL 413

Query: 414 EELISLQQQSSEMAAKIEGKRKRIDALQFHINEMETQLNLLSKETQEITKRCAEEAKKME 473
           EELISLQQQS E AAKIE KR R+ ALQ   +E+E QLN L KETQ  T RCA EAKK+ 
Sbjct: 414 EELISLQQQSVENAAKIEAKRNRLAALQSRSDEVEAQLNFLKKETQNYTSRCAMEAKKLV 473

Query: 474 EDIQTEAHNLDMVEREAVEVLKASESKFQEAIRQCEEEIQIRALDLFALVDSVSKYKERM 533
           ED++ E HN+D+VERE  +VL+ S+ K QEAI+Q EEEIQI A +L+ALVDSVSKYKE M
Sbjct: 474 EDVEIETHNVDIVEREVADVLETSKLKLQEAIKQNEEEIQICAWELYALVDSVSKYKEHM 533

Query: 534 ESKISKMNKGISETALTVSEAYKNSLPAQFSIAF 567
            SKIS+M   +SETA  VS++YK SL AQF I  
Sbjct: 534 ASKISEMKSNLSETAGAVSDSYKGSLSAQFGITL 567

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225455018|ref|XP_002279662.1| PREDICTED: kinetochore protein NDC80 homolog [Vitis vinifera]

 Score =  633 bits (1632), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 335/574 (58%), Positives = 434/574 (75%), Gaps = 14/574 (2%)

Query: 1   MRGKVRRRPTESALQPTPDLYGGNRFGG-SRDSDASFASSRPSSIGMGRASAADLYTDRS 59
           M+   RRRP +S   P P     +     SRDSDASFA SRPSS+G+ R+SA D  TDRS
Sbjct: 1   MKATGRRRPKDSFRPPPPPPPSVDHHRQLSRDSDASFAGSRPSSLGISRSSAGDALTDRS 60

Query: 60  HQSSAIRAINAHLSSHSFHIAF--PLKQVPSVKDITDVIKFLISQLDYPSTTKFEEDLFV 117
           +Q SAIR IN+ L+SHS  ++   PL   PS KDI++ +KFLISQLD+P TTK E+DL +
Sbjct: 61  YQLSAIRTINSFLASHSSPLSLKPPL---PSAKDISETLKFLISQLDFP-TTKLEDDLPI 116

Query: 118 VLKSLSCPFKINKSTLRSPNSPHNWPAYLALIHWLVQIASYNYHLTTNSKAFVENNSMYM 177
           +LK L+CP K+NKS L++P +PH WP+ L ++HWLVQIA YN HL +N + F   ++ ++
Sbjct: 117 LLKHLNCPIKLNKSALKAPGTPHAWPSLLGVMHWLVQIALYNDHLVSNLQCF---DNTFV 173

Query: 178 YASDSYLNYIEGKDGDVDNIDKGFIEKLEKEKENVSEYVEELKKKVSEMEGAM----TGP 233
           YA DSYL+YI G D  ++ +D+ F+ KLE+E++ V+E V+ L+K+V+E EG +     GP
Sbjct: 174 YALDSYLHYIRGDDDGMEAVDREFMGKLERERDAVAEGVKALEKEVAEREGRLEELRLGP 233

Query: 234 TEREKLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENE 293
           + +E +EKE+ VLEED+ KF+AII E + R   +EK++EEKE+E+G KVEE+ RICEENE
Sbjct: 234 SAKEVVEKERGVLEEDVKKFHAIIAEFSGRIASVEKILEEKEKELGVKVEENNRICEENE 293

Query: 294 EFKKRVKLQTINARDVERMRRELQAVERDIADAENARNEWESKTWDLDSKLGRKFKELEA 353
           E KKRV+LQT NARD ERM+RELQAVERDI +AE ARN WE K+WDLD+ +G KFKELEA
Sbjct: 294 ELKKRVELQTFNARDAERMKRELQAVERDITEAEVARNGWEEKSWDLDTTIGHKFKELEA 353

Query: 354 LSMECNQAMKRLKLATEIQYSLNSNGSTPSEVMGVDYKSTLKPALESFADDVKRSSVEKL 413
           LS+ECNQA++RLKL   +QY LN+ GS+P+EV+G+DYKSTLKPAL+SFADD+ +SS+ KL
Sbjct: 354 LSIECNQALRRLKLGNGLQYVLNAKGSSPAEVLGIDYKSTLKPALDSFADDINKSSMSKL 413

Query: 414 EELISLQQQSSEMAAKIEGKRKRIDALQFHINEMETQLNLLSKETQEITKRCAEEAKKME 473
           EELISLQQQS E AAKIE KR R+ ALQ   +E+E QL  L KE+Q  T RCA EAKK+ 
Sbjct: 414 EELISLQQQSVENAAKIEAKRNRLAALQSSSDEVEAQLIFLKKESQNYTSRCATEAKKLV 473

Query: 474 EDIQTEAHNLDMVEREAVEVLKASESKFQEAIRQCEEEIQIRALDLFALVDSVSKYKERM 533
           ED++ E HN+D+VERE  +VL+ S+ K QEAI+Q EEEIQ+ A +L+ALVDSVSKYKE M
Sbjct: 474 EDVEIETHNVDIVEREVADVLETSKLKLQEAIKQNEEEIQMCAWELYALVDSVSKYKEHM 533

Query: 534 ESKISKMNKGISETALTVSEAYKNSLPAQFSIAF 567
            SKIS+M   +SETA  VS++YK SL AQF I  
Sbjct: 534 ASKISEMKCNLSETAGAVSDSYKGSLLAQFGITL 567

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147771819|emb|CAN66776.1| hypothetical protein VITISV_035303 [Vitis vinifera]

 Score =  626 bits (1615), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 334/574 (58%), Positives = 430/574 (74%), Gaps = 14/574 (2%)

Query: 1   MRGKVRRRPTESALQPTPDLYGGNRFGG-SRDSDASFASSRPSSIGMGRASAADLYTDRS 59
           M+   RRRP +S   P P     +     SRDSDASFASSRPSS+G+ R+SA D  TDRS
Sbjct: 1   MKATGRRRPKDSIRPPPPPAPSVDHHRQFSRDSDASFASSRPSSLGINRSSAGDALTDRS 60

Query: 60  HQSSAIRAINAHLSSHSFHIAF--PLKQVPSVKDITDVIKFLISQLDYPSTTKFEEDLFV 117
           +Q SAIR IN+ L+SHS  ++   PL   PS KDI++ +KFLISQLD+P TTK E+DL +
Sbjct: 61  YQLSAIRTINSFLASHSSPLSLKPPL---PSAKDISETLKFLISQLDFP-TTKLEDDLPI 116

Query: 118 VLKSLSCPFKINKSTLRSPNSPHNWPAYLALIHWLVQIASYNYHLTTNSKAFVENNSMYM 177
           +LK L+CP K+NKS L++P +PH WP  L ++HWLVQIA YN HL +N + F   ++ ++
Sbjct: 117 LLKHLNCPIKLNKSALKAPGTPHAWPPLLGVMHWLVQIALYNDHLVSNLQCF---DNTFV 173

Query: 178 YASDSYLNYIEGKDGDVDNIDKGFIEKLEKEKENVSEYVEELKKKVSEMEGAM----TGP 233
           YA DSYL+YI G D  ++ +D+ F+ KLE E++ V+E V+ L+K+V+E EG +    +GP
Sbjct: 174 YALDSYLHYIRGDDDGMEAVDREFMGKLEXERDAVAEGVKALEKEVAEREGRLEELRSGP 233

Query: 234 TEREKLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENE 293
           + +E +EKE+ VLEED+ KF+AII E + R   +EK++EEKE+E+G KVEE+ RICEENE
Sbjct: 234 SAKEVVEKERGVLEEDVKKFHAIIAEFSGRIASVEKILEEKEKELGVKVEENNRICEENE 293

Query: 294 EFKKRVKLQTINARDVERMRRELQAVERDIADAENARNEWESKTWDLDSKLGRKFKELEA 353
           E KKRV+LQT NARD ERM+RELQAVERDI +AE ARN WE K+WDLD+ +G KFKELEA
Sbjct: 294 ELKKRVELQTFNARDAERMKRELQAVERDITEAEVARNGWEEKSWDLDTTIGHKFKELEA 353

Query: 354 LSMECNQAMKRLKLATEIQYSLNSNGSTPSEVMGVDYKSTLKPALESFADDVKRSSVEKL 413
           LS+ECNQA++RLKL   +QY LN+ GS+P EV+G+DYKS LKPAL+SFADD+ +SS+ KL
Sbjct: 354 LSIECNQALRRLKLGNGLQYVLNAKGSSPXEVLGIDYKSXLKPALDSFADDINKSSMSKL 413

Query: 414 EELISLQQQSSEMAAKIEGKRKRIDALQFHINEMETQLNLLSKETQEITKRCAEEAKKME 473
           EELISLQQQS E AAKIE KR R+ ALQ   +E+E QL  L KE+Q  T RCA EAKK+ 
Sbjct: 414 EELISLQQQSVENAAKIEAKRNRLAALQSXSDEVEAQLIFLKKESQNYTSRCATEAKKLV 473

Query: 474 EDIQTEAHNLDMVEREAVEVLKASESKFQEAIRQCEEEIQIRALDLFALVDSVSKYKERM 533
           ED++ E HN+D VERE  +VL+ S+ K QEAI+Q EEEIQ  A +L+ALVDSVSKYKE M
Sbjct: 474 EDVEIETHNVDXVEREVADVLETSKLKLQEAIKQNEEEIQXCAWELYALVDSVSKYKEHM 533

Query: 534 ESKISKMNKGISETALTVSEAYKNSLPAQFSIAF 567
            SKIS+M   +SETA  VS++YK SL AQF +  
Sbjct: 534 ASKISEMKCNLSETAGAVSDSYKGSLLAQFGLTI 567

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359486113|ref|XP_003633389.1| PREDICTED: LOW QUALITY PROTEIN: kinetochore protein NDC80 homolog [Vitis vinifera]

 Score =  619 bits (1595), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 312/544 (57%), Positives = 415/544 (76%), Gaps = 11/544 (2%)

Query: 29  SRDSDASFASSRPSSIGMGRASAADLYTDRSHQSSAIRAINAHLSSHSFHIAFPLKQ-VP 87
           +R+SD SF +SRPSS+G+ R+SA+D +T+RS+Q SAIR IN  L+SHS     PLK   P
Sbjct: 30  NRNSDTSFTNSRPSSLGINRSSASDAHTNRSYQLSAIRTINFFLASHSS--PLPLKPPFP 87

Query: 88  SVKDITDVIKFLISQLDYPSTTKFEEDLFVVLKSLSCPFKINKSTLRSPNSPHNWPAYLA 147
           S KDI++ +KFLISQLD+P TTK E+DL ++LK L+CP K+NKS L++P +PH WP+ L 
Sbjct: 88  SAKDISETLKFLISQLDFP-TTKLEDDLPILLKHLNCPIKLNKSALKAPGTPHAWPSLLG 146

Query: 148 LIHWLVQIASYNYHLTTNSKAFVENNSMYMYASDSYLNYIEGKDGDVDNIDKGFIEKLEK 207
           ++HWLVQIA YN HL +N + F   ++ ++YA DSYL+YI G D  ++ +D+ F+ KLE+
Sbjct: 147 VMHWLVQIALYNDHLVSNLECF---DNTFVYALDSYLHYIRGDDDGMEAVDREFMGKLER 203

Query: 208 EKENVSEYVEELKKKVSEMEGAM----TGPTEREKLEKEKCVLEEDLNKFNAIIGELNMR 263
           E++ V+E V+ L+K+V+  EG +    +GP+ +E +EKE+ VLE+D+ KF+AII E   R
Sbjct: 204 ERDAVAEGVKALEKEVAGREGRLEELRSGPSAKEVVEKERXVLEDDVKKFHAIIAEFXGR 263

Query: 264 KEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRRELQAVERDI 323
              +EK+++EKE+E+G KVEE+ RICEENEE KK V+LQT NARD ERM+R+LQAVERDI
Sbjct: 264 IASVEKILDEKEKELGVKVEENNRICEENEELKKSVELQTFNARDAERMKRKLQAVERDI 323

Query: 324 ADAENARNEWESKTWDLDSKLGRKFKELEALSMECNQAMKRLKLATEIQYSLNSNGSTPS 383
            +AE ARN WE K+WD+D+ +G KF+ELEALS+ECNQA++RLKL   +QY LN+NGS+ +
Sbjct: 324 TEAEVARNGWEEKSWDVDTTIGHKFEELEALSIECNQALRRLKLGNGLQYVLNANGSSLA 383

Query: 384 EVMGVDYKSTLKPALESFADDVKRSSVEKLEELISLQQQSSEMAAKIEGKRKRIDALQFH 443
           +V+G+DYK TLKPAL+SFADD+ +SS+ KLEELISLQQ S E A KIE KR R+ ALQ  
Sbjct: 384 KVLGIDYKXTLKPALDSFADDINKSSMSKLEELISLQQXSVENADKIETKRNRLAALQSS 443

Query: 444 INEMETQLNLLSKETQEITKRCAEEAKKMEEDIQTEAHNLDMVEREAVEVLKASESKFQE 503
            +E+E QLN L KETQ  T RCA EAKK+ ED + E HN+D++ERE  +VL+ S+ K  E
Sbjct: 444 SDEVEAQLNFLKKETQNYTSRCATEAKKLVEDAEIETHNVDIMEREVADVLETSKLKLXE 503

Query: 504 AIRQCEEEIQIRALDLFALVDSVSKYKERMESKISKMNKGISETALTVSEAYKNSLPAQF 563
           AI+Q EEEIQI A +L+ALVDSVSKYKE   SKIS+M   +SETA  VS++YK SL AQF
Sbjct: 504 AIKQNEEEIQICAWELYALVDSVSKYKEHRVSKISEMKSNLSETAEAVSDSYKGSLSAQF 563

Query: 564 SIAF 567
            I  
Sbjct: 564 GITL 567

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359486104|ref|XP_003633386.1| PREDICTED: LOW QUALITY PROTEIN: kinetochore protein NDC80 homolog [Vitis vinifera]

 Score =  603 bits (1556), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 316/543 (58%), Positives = 420/543 (77%), Gaps = 9/543 (1%)

Query: 29  SRDSDASFASSRPSSIGMGRASAADLYTDRSHQSSAIRAINAHLSSHSFHIAFPLKQVPS 88
           SR+SD SF+SSRPSS+G+ R+SA D  TDRS+Q SAIR IN+ L+SHS  +        +
Sbjct: 76  SRNSDPSFSSSRPSSLGINRSSAGDALTDRSYQLSAIRTINSFLASHSSPLPLKPPLPSA 135

Query: 89  VKDITDVIKFLISQLDYPSTTKFEEDLFVVLKSLSCPFKINKSTLRSPNSPHNWPAYLAL 148
            +DI++ +KFLISQLD+P TTK E+DL ++LK L+CP K+NKS L++P +PH WP+ L +
Sbjct: 136 -EDISEXLKFLISQLDFP-TTKLEDDLPILLKHLNCPIKLNKSALKAPGTPHAWPSLLGV 193

Query: 149 IHWLVQIASYNYHLTTNSKAFVENNSMYMYASDSYLNYIEGKDGDVDNIDKGFIEKLEKE 208
           +HWLVQIA YN HL +N + F   ++ +++A DSYL+YI G D  ++ +D+ F+ KLE+E
Sbjct: 194 MHWLVQIALYNDHLVSNLECF---DNTFVHALDSYLHYIRGDDDGMEAVDREFMGKLERE 250

Query: 209 KENVSEYVEELKKKVSEMEGAM----TGPTEREKLEKEKCVLEEDLNKFNAIIGELNMRK 264
           ++ V++ V+ L+K+V+E EG +    +GP+ +E +EKE+ VLEED+ KF+AII E + R 
Sbjct: 251 RDAVAKGVKALEKEVAEREGRLEELRSGPSAKEVVEKERGVLEEDVKKFHAIIAEFSGRI 310

Query: 265 EKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRRELQAVERDIA 324
             +EK+++EKE+E+G KVEE+ RICEENEE KKRV+LQT NARD ERM+RELQAVERDI 
Sbjct: 311 ASVEKILDEKEKELGVKVEENNRICEENEELKKRVELQTFNARDAERMKRELQAVERDIT 370

Query: 325 DAENARNEWESKTWDLDSKLGRKFKELEALSMECNQAMKRLKLATEIQYSLNSNGSTPSE 384
           +AE ARN WE K+WD+D+ +G KFKELEALS+ECNQA++RLKL   +QY LN+ GS P+E
Sbjct: 371 EAEVARNGWEEKSWDVDTTIGHKFKELEALSIECNQALRRLKLGNGLQYVLNAKGSLPAE 430

Query: 385 VMGVDYKSTLKPALESFADDVKRSSVEKLEELISLQQQSSEMAAKIEGKRKRIDALQFHI 444
           V+G+DYKSTLKPAL+SFADD+ + S+ KLEELISLQ+QS E AAKIE KR R+ ALQ   
Sbjct: 431 VLGIDYKSTLKPALDSFADDINKCSMLKLEELISLQEQSVENAAKIEAKRNRLAALQTSS 490

Query: 445 NEMETQLNLLSKETQEITKRCAEEAKKMEEDIQTEAHNLDMVEREAVEVLKASESKFQEA 504
           +E+E QLN L KETQ  T RCA EAKK+ ED++ E +N+D+VERE  +VL+ S+ K QEA
Sbjct: 491 DEVEAQLNFLKKETQNYTSRCAMEAKKLVEDVEIETYNVDIVEREVADVLEMSKLKLQEA 550

Query: 505 IRQCEEEIQIRALDLFALVDSVSKYKERMESKISKMNKGISETALTVSEAYKNSLPAQFS 564
           I+Q E+EIQI A +L+ALVDSVSKYKERM SKIS+M   +SETA  VS++YK SL AQF 
Sbjct: 551 IKQNEDEIQICAWELYALVDSVSKYKERMVSKISEMKSNLSETAGAVSDSYKGSLSAQFG 610

Query: 565 IAF 567
           I  
Sbjct: 611 ITL 613

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359486098|ref|XP_003633385.1| PREDICTED: LOW QUALITY PROTEIN: kinetochore protein ndc80-like [Vitis vinifera]

 Score =  593 bits (1528), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 311/572 (54%), Positives = 410/572 (71%), Gaps = 29/572 (5%)

Query: 1   MRGKVRRRPTESALQPTPDLYGGNRFGG-SRDSDASFASSRPSSIGMGRASAADLYTDRS 59
           M+   RRRP +S   P P     +     SR+SDASFASS PSS+G+ R+SA D  T+RS
Sbjct: 1   MKATGRRRPKDSIHPPPPPPPSVDHHRQFSRNSDASFASSHPSSLGINRSSAGDALTNRS 60

Query: 60  HQSSAIRAINAHLSSHSFHIAFPLKQVPSVKDITDVIKFLISQLDYPSTTKFEEDLFVVL 119
           +Q SAIR IN+ L+SH                            D+P TTK E+DL ++L
Sbjct: 61  YQLSAIRTINSFLASHXXXXX--------------------XXXDFP-TTKLEDDLPILL 99

Query: 120 KSLSCPFKINKSTLRSPNSPHNWPAYLALIHWLVQIASYNYHLTTNSKAFVENNSMYMYA 179
           K L+CP K+NKS L++P +P  WP+ L ++HWL QIA YN HL +N + F   ++ ++YA
Sbjct: 100 KHLNCPIKLNKSALKAPGTPPVWPSLLGVMHWLAQIALYNDHLVSNLEYF---DNTFVYA 156

Query: 180 SDSYLNYIEGKDGDVDNIDKGFIEKLEKEKENVSEYVEELKKKVSEMEGAM----TGPTE 235
            DSYL+YI G D  ++ + + F+ KLE+E++ V++ V+ L+K+V+E EG +    +GP+ 
Sbjct: 157 LDSYLHYIRGDDDGMEAVGREFMGKLERERDAVAKGVKALEKEVAEREGRLEELRSGPSA 216

Query: 236 REKLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEF 295
           +E +EKE+ VLEED+ KF+AII E + R   +EK+++EKE+E+G KVEE+ RICEENEE 
Sbjct: 217 KEVVEKERGVLEEDVKKFHAIIAEFSGRIASVEKILDEKEKELGVKVEENNRICEENEEL 276

Query: 296 KKRVKLQTINARDVERMRRELQAVERDIADAENARNEWESKTWDLDSKLGRKFKELEALS 355
           KKRV+LQT NARD ERM+RELQAVERDI +AE ARN WE K+WD+D+ +G KFKELEALS
Sbjct: 277 KKRVELQTFNARDAERMKRELQAVERDITEAEVARNGWEEKSWDVDTTIGHKFKELEALS 336

Query: 356 MECNQAMKRLKLATEIQYSLNSNGSTPSEVMGVDYKSTLKPALESFADDVKRSSVEKLEE 415
           +ECNQA+ RLKL   +QY LN+ GS P+EV+G+DYKSTLKPAL+SFADD+ + S+ KLEE
Sbjct: 337 IECNQALWRLKLGNGLQYVLNAKGSLPAEVLGIDYKSTLKPALDSFADDINKCSMLKLEE 396

Query: 416 LISLQQQSSEMAAKIEGKRKRIDALQFHINEMETQLNLLSKETQEITKRCAEEAKKMEED 475
           LISLQ+QS E AAKIE K+ R+ ALQ   +E+E QLN L KETQ  T RCA EAKK+ ED
Sbjct: 397 LISLQEQSVENAAKIEAKKNRLAALQTSCDEVEAQLNFLKKETQNYTSRCAMEAKKLVED 456

Query: 476 IQTEAHNLDMVEREAVEVLKASESKFQEAIRQCEEEIQIRALDLFALVDSVSKYKERMES 535
           ++ E HN+D+VERE  +VL+ S+ K QEAI+Q E+EIQI A +L+ALVDSVSKYKE M S
Sbjct: 457 VEIETHNVDIVEREVADVLEMSKLKLQEAIKQNEDEIQICAWELYALVDSVSKYKEPMVS 516

Query: 536 KISKMNKGISETALTVSEAYKNSLPAQFSIAF 567
           KIS+M   +SETA  VS++YK SL AQF I  
Sbjct: 517 KISEMKSNLSETAGAVSDSYKGSLSAQFGITL 548

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147765579|emb|CAN64748.1| hypothetical protein VITISV_041326 [Vitis vinifera]

 Score =  572 bits (1474), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 304/535 (56%), Positives = 399/535 (74%), Gaps = 26/535 (4%)

Query: 29  SRDSDASFASSRPSSIGMGRASAADLYTDRSHQSSAIRAINAHLSSHSFHIAFPLKQVPS 88
           SR+SDASFASSRPSS+G+ R+SA D  TDRS+Q SAIR IN+ L+SHS  +        S
Sbjct: 30  SRNSDASFASSRPSSLGINRSSAGDALTDRSYQLSAIRTINSFLASHSSPLPLKPPLP-S 88

Query: 89  VKDITDVIKFLISQLDYPSTTKFEEDLFVVLKSLSCPFKINKSTLRSPNSPHNWPAYLAL 148
            KDI++ +KFLIS+LD+P TTK E+DL ++LK L+CP K+NKS L++P +PH+WP+ L +
Sbjct: 89  AKDISETLKFLISELDFP-TTKLEDDLPILLKHLNCPIKLNKSALKAPGTPHSWPSLLGV 147

Query: 149 IHWLVQIASYNYHLTTNSKAFVENNSMYMYASDSYLNYIEGKDGDVDNIDKGFIEKLEKE 208
           +HWLVQIA YN HL +N + F   ++ ++YA DSYL+YI G D  ++ +D+ F+ KLE+E
Sbjct: 148 MHWLVQIALYNDHLMSNLECF---DNTFVYALDSYLHYIRGDDDGMEAVDREFMGKLERE 204

Query: 209 KENVSEYVEELKKKVSEMEGAM----TGPTEREKLEKEKCVLEEDLNKFNAIIGELNMRK 264
           ++ V+E V+ L+K+V+E EG +    +GP+ +E +EKE+ VLEED+ KF+AII E + R 
Sbjct: 205 RDAVAEGVKALEKEVTEREGRLEELRSGPSAKEVMEKERGVLEEDVKKFHAIIAEFSGRI 264

Query: 265 EKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRRELQAVERDIA 324
             +EK++EEKE+E+G KVEE+ RICEENEE KKRV+LQT NARD ERM+RELQAVERDI 
Sbjct: 265 SSVEKILEEKEKELGVKVEENNRICEENEELKKRVELQTFNARDAERMKRELQAVERDIT 324

Query: 325 DAENARNEWESKTWDLDSKLGRKFKELEALSMECNQAMKRLKLATEIQYSLNSNGSTPSE 384
           +AE ARN WE K+WD+D+ +G K                 LKL   +QY LN+ GS+P+E
Sbjct: 325 EAEVARNGWEEKSWDVDTTIGHK-----------------LKLGNGLQYVLNAKGSSPAE 367

Query: 385 VMGVDYKSTLKPALESFADDVKRSSVEKLEELISLQQQSSEMAAKIEGKRKRIDALQFHI 444
           V+G+DYKSTLKPAL+SFADD+ +SS+ KLEELISLQQQS E AAKIE KR  + ALQ   
Sbjct: 368 VLGIDYKSTLKPALDSFADDINKSSMSKLEELISLQQQSVENAAKIEAKRNHLAALQSSS 427

Query: 445 NEMETQLNLLSKETQEITKRCAEEAKKMEEDIQTEAHNLDMVEREAVEVLKASESKFQEA 504
           +E+E QLN L KETQ  T RCA EAKK+ ED++ E HN+D+VERE  +VL+ S+ K QEA
Sbjct: 428 DEVEAQLNFLKKETQNYTSRCAXEAKKLVEDVEIETHNVDIVEREVADVLETSKLKLQEA 487

Query: 505 IRQCEEEIQIRALDLFALVDSVSKYKERMESKISKMNKGISETALTVSEAYKNSL 559
           I+Q EEEIQI A +L+ALVDSV KYKE M SK S+M   +SETA  VS++YK SL
Sbjct: 488 IKQNEEEIQICAWELYALVDSVXKYKEHMASKXSEMKSNLSETAGAVSDSYKGSL 542

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|298204607|emb|CBI23882.3| unnamed protein product [Vitis vinifera]

 Score =  554 bits (1428), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 307/570 (53%), Positives = 388/570 (68%), Gaps = 68/570 (11%)

Query: 1   MRGKVRRRPTESALQPTPDLYGGNRFGG-SRDSDASFASSRPSSIGMGRASAADLYTDRS 59
           M+   RRRP +S   P P     +     SRDSDASFASSRPSS+G+ R+SA D  TDRS
Sbjct: 1   MKATGRRRPKDSIRPPPPPAPSVDHHRQFSRDSDASFASSRPSSLGINRSSAGDALTDRS 60

Query: 60  HQSSAIRAINAHLSSHSFHIAF--PLKQVPSVKDITDVIKFLISQLDYPSTTKFEEDLFV 117
           +Q SAIR IN+ L+SHS  ++   PL   PS KDI++ +KFLISQLD+P TTK E+DL +
Sbjct: 61  YQLSAIRTINSFLASHSSPLSLKPPL---PSAKDISETLKFLISQLDFP-TTKLEDDLPI 116

Query: 118 VLKSLSCPFKINKSTLRSPNSPHNWPAYLALIHWLVQIASYNYHLTTNSKAFVENNSMYM 177
           +LK L+CP K+NKS L++P +PH WP  L ++H                           
Sbjct: 117 LLKHLNCPIKLNKSALKAPGTPHAWPPLLGVMH--------------------------- 149

Query: 178 YASDSYLNYIEGKDGDVDNIDKGFIEKLEKEKENVSEYVEELKKKVSEMEGAMTGPTERE 237
                YL+YI G D  ++ +D+                               +GP+ +E
Sbjct: 150 ----CYLHYIRGDDDGMEAVDRE------------------------------SGPSAKE 175

Query: 238 KLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKK 297
            +EK + VLEED+ KF+AII E + R   +EK++EEKE+E+G KVEE+ RICEENEE KK
Sbjct: 176 VVEKVRGVLEEDVKKFHAIIAEFSGRIASVEKILEEKEKELGVKVEENNRICEENEELKK 235

Query: 298 RVKLQTINARDVERMRRELQAVERDIADAENARNEWESKTWDLDSKLGRKFKELEALSME 357
           RV+LQT NARD ERM+RELQAVERDI +AE ARN WE K+WDLD+ +G KFKELEALS+E
Sbjct: 236 RVELQTFNARDAERMKRELQAVERDITEAEVARNGWEEKSWDLDTTIGHKFKELEALSIE 295

Query: 358 CNQAMKRLKLATEIQYSLNSNGSTPSEVMGVDYKSTLKPALESFADDVKRSSVEKLEELI 417
           CNQA++RLKL   +QY LN+ GS+P+EV+G+DYKS LKPAL+SFADD+ +SS+ KLEELI
Sbjct: 296 CNQALRRLKLGNGLQYVLNAKGSSPTEVLGIDYKSALKPALDSFADDINKSSMSKLEELI 355

Query: 418 SLQQQSSEMAAKIEGKRKRIDALQFHINEMETQLNLLSKETQEITKRCAEEAKKMEEDIQ 477
           SLQQQS E AAKIE KR R+ ALQ   +E+E QLN L KETQ  T RCA EAKK+ ED++
Sbjct: 356 SLQQQSVENAAKIEAKRNRLAALQSRSDEVEAQLNFLKKETQNYTSRCAMEAKKLVEDVE 415

Query: 478 TEAHNLDMVEREAVEVLKASESKFQEAIRQCEEEIQIRALDLFALVDSVSKYKERMESKI 537
            E HN+D+VERE  +VL+ S+ K QEAI+Q EEEIQI A +L+ALVDSVSKYKE M SKI
Sbjct: 416 IETHNVDIVEREVADVLETSKLKLQEAIKQNEEEIQICAWELYALVDSVSKYKEHMASKI 475

Query: 538 SKMNKGISETALTVSEAYKNSLPAQFSIAF 567
           S+M   +SETA  VS++YK SL AQF I  
Sbjct: 476 SEMKSNLSETAGAVSDSYKGSLSAQFGITL 505

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	576
TAIR|locus:2096996	568	AT3G54630 "AT3G54630" [Arabido	0.892	0.904	0.461	8.3e-122
UNIPROTKB|O14777	642	NDC80 "Kinetochore protein NDC	0.647	0.580	0.188	2.4e-21
UNIPROTKB|E1BF82	642	NDC80 "Uncharacterized protein	0.628	0.563	0.194	2.8e-20
UNIPROTKB|Q4R630	642	NDC80 "Kinetochore protein NDC	0.647	0.580	0.185	3e-20
UNIPROTKB|E2RIY7	642	NDC80 "Uncharacterized protein	0.631	0.566	0.174	5.8e-19
UNIPROTKB|Q76I89	640	NDC80 "Kinetochore protein NDC	0.649	0.584	0.188	7.1e-19
MGI|MGI:1914302	642	Ndc80 "NDC80 homolog, kinetoch	0.595	0.534	0.185	4.8e-17
POMBASE|SPBC11C11.03	624	ndc80 "spindle pole body prote	0.807	0.745	0.203	2.3e-15
ZFIN|ZDB-GENE-030131-904	632	ndc80 "NDC80 homolog, kinetoch	0.269	0.245	0.286	2.4e-15
UNIPROTKB|G4NCT8	747	MGG_01027 "Kinetochore protein	0.289	0.223	0.242	4.8e-10

TAIR|locus:2096996 AT3G54630 "AT3G54630" [Arabidopsis thaliana (taxid:3702)]

 Score = 1198 (426.8 bits), Expect = 8.3e-122, P = 8.3e-122
 Identities = 243/527 (46%), Positives = 349/527 (66%)

Query:    44 IGMGRASAADLYTDRSHQSSAIRAINAHLSSHSFHIAFPLKQVPSVKDITDVIKFLISQL 103
             IG+G   A+D   DRS   S IR INA LS+H+F I+     VPSVKDI++ +KFL+S L
Sbjct:    50 IGLGGRGASD---DRS---SMIRFINAFLSTHNFPISIRGNPVPSVKDISETLKFLLSAL 103

Query:   104 DYP-STTKFEEDLFVVLKSLSCPFKINKSTLRSPNSPHNWPAYLALIHWLVQIASYNYHL 162
             DYP  + K++EDL   LKS  CPFKI KS+L++PN+PHNWP  LA++HWL ++A ++ HL
Sbjct:   104 DYPCDSIKWDEDLVFFLKSQKCPFKITKSSLKAPNTPHNWPTVLAVVHWLAELARFHQHL 163

Query:   163 TTNSKAFVENNSMYMYASDSYLNYIEGKDGDVDNIDKGFIEKLEKEKENVSEYVEELKKK 222
              +NS +  E+NSM  +A  S+ ++I G+D  V+++D  F+ KLE EK +V+E +   +K 
Sbjct:   164 VSNSTSVPEDNSMNFFAIQSFGHFIRGEDDKVNDLDSQFLGKLEAEKTSVAETISGCEKI 223

Query:   223 VSEMEGAMT----GPTXXXXXXXXXXXXXXXXNKFNAIIGELNXXXXXXXXXXXXXXXXI 278
               E+E  +     GP+                NKF  I+ E                  +
Sbjct:   224 SGELEAKLESLRKGPSKKESLEKVKADLENDVNKFRTIVVEYTDRNPAMEKVVEEKAKEL 283

Query:   279 GKKVEEHKRICEENEEFKKRVKLQTINARDVERMRRELQAVERDIADAENARNEWESKTW 338
               K EE +RI  EN+E KK V+LQ  +A DV RMRRELQAVERD+ADAE AR+ W+ K W
Sbjct:   284 KAKEEERERISVENKELKKSVELQNFSAADVNRMRRELQAVERDVADAEVARDGWDQKAW 343

Query:   339 DLDSKLGRKFKELEALSMECNQAMKRLKLATEIQYSLNSNGSTPSEVMGVDYKSTLKPAL 398
             +L+S++  +F +++ L+++CNQA++RLKL  +IQ+++N  G TP+ VMGVDYKS +KPAL
Sbjct:   344 ELNSQIRNQFHQIQTLAIDCNQALRRLKL--DIQFAVNERGETPAAVMGVDYKSVVKPAL 401

Query:   399 ESFADDVKRSSVEKLEELISLQQQSSEMAAKIEGKRKRIDALQFHINEMETQLNLLSKET 458
              S  D +K SS EK+EEL++LQ   SEMA+KIE KR  + ++Q  IN++E ++ L+ KET
Sbjct:   402 CSLCDGIKGSSAEKVEELVTLQHHKSEMASKIESKRSLLGSIQLQINDLEEKMKLVKKET 461

Query:   459 QEITKRCAEEAKKMEEDIQTEAHNLDMVEREAVEVLKASESKFQEAIRQCEEEIQIRALD 518
             QE++ +C  EAK + E ++ EA NL++VE+EA E +KASE + QEA+++ EEE+Q  A  
Sbjct:   462 QELSTKCDLEAKTLVESVKAEALNLEVVEKEAAEFVKASELRLQEAVKESEEEVQACAAQ 521

Query:   519 LFALVDSVSKYKERMESKISKMNKGISETALTVSEAYKNSLPAQFSI 565
             LFAL+DS+SK KE M+SKIS++  G+++TA  VSE YK +      I
Sbjct:   522 LFALIDSISKQKEYMDSKISEIKTGVADTASAVSEIYKANFKKNLGI 568

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0000911 "cytokinesis by cell plate formation" evidence=RCA

GO:0006260 "DNA replication" evidence=RCA

GO:0006306 "DNA methylation" evidence=RCA

GO:0007067 "mitosis" evidence=RCA

GO:0007129 "synapsis" evidence=RCA

GO:0007131 "reciprocal meiotic recombination" evidence=RCA

GO:0008283 "cell proliferation" evidence=RCA

GO:0010564 "regulation of cell cycle process" evidence=RCA

GO:0048451 "petal formation" evidence=RCA

GO:0048453 "sepal formation" evidence=RCA

GO:0051567 "histone H3-K9 methylation" evidence=RCA

UNIPROTKB|O14777 NDC80 "Kinetochore protein NDC80 homolog" [Homo sapiens (taxid:9606)]

 Score = 179 (68.1 bits), Expect = 2.4e-21, Sum P(2) = 2.4e-21
 Identities = 76/404 (18%), Positives = 167/404 (41%)

Query:   176 YMYASDSY--LNY-IEGKDGDVDNIDKGFIEKLEKEKENVSEYVEELKKKVSEMEGAMTG 232
             +M  +DS+  +N  ++ K  D+ N+D   +E LE +   ++E +  L+++  E E     
Sbjct:   236 FMSGADSFDEMNAELQSKLKDLFNVDAFKLESLEAKNRALNEQIARLEQE-REKE----- 289

Query:   233 PTXXXXXXXXXXXXXXXXNKFNAIIGELNXXXXXXXXXXXXXXXXIGKKVEEHKRICEEN 292
             P                  K+ A +  L                 I +   E + I +EN
Sbjct:   290 PNRLESLRKLKASLQGDVQKYQAYMSNLESHSAILDQKLNGLNEEIARVELECETIKQEN 349

Query:   293 EEFKKRVKLQTINARDVERMRRELQAVERDIADAENARNEWESKTWDLDSKLGRKFKELE 352
                +  +  Q  +  D+ER+  E   +++ I          + K W+ + K  R  + +E
Sbjct:   350 TRLQNIIDNQKYSVADIERINHERNELQQTINKLTKDLEAEQQKLWNEELKYARGKEAIE 409

Query:   353 ALSMECNQAMKRLKLATE-------IQYSLNSNGSTPSEVMGVDYKSTLKPALESFADDV 405
                 E ++  ++LKL  +         + +  N    +  + V Y++ +   L+   ++ 
Sbjct:   410 TQLAEYHKLARKLKLIPKGAENSKGYDFEIKFNPEAGANCL-VKYRAQVYVPLKELLNET 468

Query:   406 KRSSVEKLEELISLQQQSSEMAAKIEGKRKRIDALQFHINEMETQLNLLSKETQEITKRC 465
             +    + L + + L+    ++ A I   ++ +  L+  + +++       KE +E  ++C
Sbjct:   469 EEEINKALNKKMGLEDTLEQLNAMITESKRSVRTLKEEVQKLDDLYQQKIKEAEEEDEKC 528

Query:   466 AEEAKKMEEDIQTEAHNLDMVEREAVEVLKASESKFQEAIRQCEEE-------IQIRALD 518
             A E + +E+        ++    EA+  L A + ++Q  ++   EE       +Q R L+
Sbjct:   529 ASELESLEKHKHLLESTVNQGLSEAMNELDAVQREYQLVVQTTTEERRKVGNNLQ-RLLE 587

Query:   519 LFAL-VDSVSKYKERMESKISK-----MNKGISETALTVSEAYK 556
             + A  V SV K+ E   +K+ +     M++ +SE    + + Y+
Sbjct:   588 MVATHVGSVEKHLEEQIAKVDREYEECMSEDLSENIKEIRDKYE 631

GO:0051301 "cell division" evidence=IEA

GO:0007049 "cell cycle" evidence=NAS

GO:0007051 "spindle organization" evidence=NAS

GO:0048015 "phosphatidylinositol-mediated signaling" evidence=NAS

GO:0007052 "mitotic spindle organization" evidence=IMP

GO:0000776 "kinetochore" evidence=IDA

GO:0031262 "Ndc80 complex" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0000777 "condensed chromosome kinetochore" evidence=IDA

GO:0007059 "chromosome segregation" evidence=IMP

GO:0008608 "attachment of spindle microtubules to kinetochore" evidence=IMP

GO:0000132 "establishment of mitotic spindle orientation" evidence=IMP

GO:0000070 "mitotic sister chromatid segregation" evidence=TAS

GO:0005634 "nucleus" evidence=TAS

GO:0000775 "chromosome, centromeric region" evidence=TAS

GO:0007067 "mitosis" evidence=TAS

GO:0000087 "M phase of mitotic cell cycle" evidence=TAS

GO:0000236 "mitotic prometaphase" evidence=TAS

GO:0000278 "mitotic cell cycle" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0000942 "condensed nuclear chromosome outer kinetochore" evidence=IDA

UNIPROTKB|E1BF82 NDC80 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 174 (66.3 bits), Expect = 2.8e-20, Sum P(2) = 2.8e-20
 Identities = 76/391 (19%), Positives = 162/391 (41%)

Query:   176 YMYASDSY--LNY-IEGKDGDVDNIDKGFIEKLEKEKENVSEYVEELKKKVSEMEGAMTG 232
             +M  +DS+  +N  ++ K  D+ N+D   +E L  +   ++E +  L+++  E E     
Sbjct:   236 FMTGADSFEEMNAELQSKLKDLFNVDASKLESLAAKNRALNEQIARLEQE-REKE----- 289

Query:   233 PTXXXXXXXXXXXXXXXXNKFNAIIGELNXXXXXXXXXXXXXXXXIGKKVEEHKRICEEN 292
             P                  K+ A +  L                 I +   E + + +EN
Sbjct:   290 PNRLESLRKLKTSLQADVQKYQAYMSNLESHSAILDQKLNGLDEEISRVELECETMKQEN 349

Query:   293 EEFKKRVKLQTINARDVERMRRELQAVERDIADAENARNEWESKTWDLDSKLGRKFKELE 352
                +  V  Q  +  DVER+  E   +++ I          + + W+ + K  R  + +E
Sbjct:   350 SRLQNIVDNQKYSVADVERINHERNELQQTINKLTKDLEAEQQQLWNEELKYARGKEAIE 409

Query:   353 ALSMECNQAMKRLKLATE-------IQYSLNSNGSTPSEVMGVDYKSTLKPALESFADDV 405
                 E ++  ++LKL  +         + +  N    +  + V Y++ +   L+   +  
Sbjct:   410 TQLTEYHKLARKLKLIPKGAENSKGYDFEIKFNPDAGANCL-VKYRAQVYAPLKELLNQT 468

Query:   406 KRSSVEKLEELISLQQQSSEMAAKIEGKRKRIDALQFHINEMETQLNLLSKETQEITKRC 465
             +    + L + + L+    +++  I   R+ +  L+  + +++       KE +E  K+C
Sbjct:   469 EEEINKALNKKMGLEDTLEQLSTMITESRRSVRTLKEEVQKLDDLYQQKVKEAEEEDKKC 528

Query:   466 AEEAKKMEEDIQTEAHNLDMVEREAVEVLKASESKFQEAIRQCEEE-------IQIRALD 518
             A+E + +E+        ++    EAV  L A + ++Q  ++   EE       +Q R L+
Sbjct:   529 ADELESLEKHKHLLESAVNEGLSEAVNELDAIQREYQLVVQTTTEERRKVGNNLQ-RLLE 587

Query:   519 LFAL-VDSVSKYKERMESKISKMNKGISETA 548
             + A+ V SV K+   +E +I+K ++   E A
Sbjct:   588 MVAIHVGSVEKH---LEEQIAKNDRECKEYA 615

GO:0031262 "Ndc80 complex" evidence=IEA

GO:0008608 "attachment of spindle microtubules to kinetochore" evidence=IEA

GO:0007052 "mitotic spindle organization" evidence=IEA

GO:0000942 "condensed nuclear chromosome outer kinetochore" evidence=IEA

GO:0000132 "establishment of mitotic spindle orientation" evidence=IEA

UNIPROTKB|Q4R630 NDC80 "Kinetochore protein NDC80 homolog" [Macaca fascicularis (taxid:9541)]

 Score = 169 (64.5 bits), Expect = 3.0e-20, Sum P(2) = 3.0e-20
 Identities = 75/404 (18%), Positives = 165/404 (40%)

Query:   176 YMYASDSY--LNY-IEGKDGDVDNIDKGFIEKLEKEKENVSEYVEELKKKVSEMEGAMTG 232
             +M  +DS+  +N  ++ K  D+ N+D   +E LE +   ++E +  L+++  E E     
Sbjct:   236 FMSGADSFDEMNAELQSKLKDLFNVDAFKLESLEAKNRALNEQIARLEQE-REKE----- 289

Query:   233 PTXXXXXXXXXXXXXXXXNKFNAIIGELNXXXXXXXXXXXXXXXXIGKKVEEHKRICEEN 292
             P                  K+ A +  L                 I +   E + I +EN
Sbjct:   290 PNRLESLRKLKASLQGDVQKYQAYMSNLESHSAILDQKLNGLNEEIARVELECETIKQEN 349

Query:   293 EEFKKRVKLQTINARDVERMRRELQAVERDIADAENARNEWESKTWDLDSKLGRKFKELE 352
                +  +  Q  +  D+ER+  E   +++ I          + K W+ + K  R  + +E
Sbjct:   350 TRLQNIIDNQKYSVADIERINHERNELQQTINKLTKDLEAEQQKLWNEELKYARGKEAIE 409

Query:   353 ALSMECNQAMKRLKLATE-------IQYSLNSNGSTPSEVMGVDYKSTLKPALESFADDV 405
                 E ++  ++LKL  +         + +  N    +  + V Y++ +   L+   ++ 
Sbjct:   410 TQLAEYHKLARKLKLIPKGAENSKGYDFEIKFNPEAGANCL-VKYRAQVYVPLKELLNET 468

Query:   406 KRSSVEKLEELISLQQQSSEMAAKIEGKRKRIDALQFHINEMETQLNLLSKETQEITKRC 465
             +    +   + + L+    ++ A I   ++ +  L+  + +++       KE +E  ++C
Sbjct:   469 EEEINKARNKKMGLEDTLEQLNAMITESKRSVRTLKEEVQKLDDLYQQKIKEAEEEDEKC 528

Query:   466 AEEAKKMEEDIQTEAHNLDMVEREAVEVLKASESKFQEAIRQCEEE-------IQIRALD 518
             A E + +E+        ++    EA+  L A + ++Q  ++   EE       +Q R L+
Sbjct:   529 ASELESLEKHKHLLESTVNQGLSEAMNELDAVQREYQLVVQTTTEERRKVGNNLQ-RLLE 587

Query:   519 LFAL-VDSVSKYKERMESKISK-----MNKGISETALTVSEAYK 556
             + A  V SV K+ E   +K  +     M++ +SE    + + Y+
Sbjct:   588 MVATHVGSVEKHLEEQIAKADREYEECMSEDLSENIKEIRDKYE 631

GO:0000776 "kinetochore" evidence=ISS

GO:0000777 "condensed chromosome kinetochore" evidence=ISS

GO:0007052 "mitotic spindle organization" evidence=ISS

GO:0007059 "chromosome segregation" evidence=ISS

GO:0031262 "Ndc80 complex" evidence=ISS

UNIPROTKB|E2RIY7 NDC80 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 165 (63.1 bits), Expect = 5.8e-19, Sum P(2) = 5.8e-19
 Identities = 67/385 (17%), Positives = 160/385 (41%)

Query:   176 YMYASDSY--LNY-IEGKDGDVDNIDKGFIEKLEKEKENVSEYVEELKKKVSEMEGAMTG 232
             +M  +DS+  +N  ++ K  D+ N+D   +E L  + + ++E +  L+++  E E     
Sbjct:   236 FMTGADSFEEMNAELQSKLKDLFNVDASKLESLAAKNKALNEQIARLEQE-REKE----- 289

Query:   233 PTXXXXXXXXXXXXXXXXNKFNAIIGELNXXXXXXXXXXXXXXXXIGKKVEEHKRICEEN 292
             P                  K+ A +  L                 I +   E++ + +EN
Sbjct:   290 PNRLESLRKLKTSLQADVQKYQAYMNNLESHSAILDQKLNGLDEEISRVELEYETMKQEN 349

Query:   293 EEFKKRVKLQTINARDVERMRRELQAVERDIADAENARNEWESKTWDLDSKLGRKFKELE 352
                +  V  Q  +  D+ER+  E   +++ I          + + W+ + K  R  + +E
Sbjct:   350 TRLQNIVDNQKYSVADIERINHERNELQQTINKLTKDLEAEQQQLWNEELKYARGKEAIE 409

Query:   353 ALSMECNQAMKRLKLATE-------IQYSLNSNGSTPSEVMGVDYKSTLKPALESFADDV 405
                 E ++  ++LKL  +         + +  N    +  + V Y++ +   L+   +  
Sbjct:   410 TQLSEYHKLARKLKLIPKGAENSKGYDFEIKFNPEAGANCL-VKYRAQVYVPLKELLNQT 468

Query:   406 KRSSVEKLEELISLQQQSSEMAAKIEGKRKRIDALQFHINEMETQLNLLSKETQEITKRC 465
             +    + L + + L+    ++   I   R+ +  L+  + +++       KE +E  K+C
Sbjct:   469 EEEINKALNKKMGLEDTLEQLNTMITESRRGVRTLKEEVQKLDDLYQQKVKEAEEEDKKC 528

Query:   466 AEEAKKMEEDIQTEAHNLDMVEREAVEVLKASESKFQEAIRQCEEEIQIRALDLFALVDS 525
             A E + +++        ++    EA+  L A + ++Q  ++   EE +    +L  L++ 
Sbjct:   529 ASELESLDKHKHLLESAVNEGLSEAINELDAIQREYQLVVQTTTEERRKVGNNLQRLLEM 588

Query:   526 VSKY----KERMESKISKMNKGISE 546
             V+ +    ++ +E +I+K+++   E
Sbjct:   589 VATHVGSVEKHLEVQIAKVDREYEE 613

GO:0031262 "Ndc80 complex" evidence=IEA

GO:0008608 "attachment of spindle microtubules to kinetochore" evidence=IEA

GO:0007052 "mitotic spindle organization" evidence=IEA

GO:0000942 "condensed nuclear chromosome outer kinetochore" evidence=IEA

GO:0000132 "establishment of mitotic spindle orientation" evidence=IEA

UNIPROTKB|Q76I89 NDC80 "Kinetochore protein NDC80 homolog" [Gallus gallus (taxid:9031)]

 Score = 166 (63.5 bits), Expect = 7.1e-19, Sum P(2) = 7.1e-19
 Identities = 76/403 (18%), Positives = 159/403 (39%)

Query:   176 YMYASDSYLNY---IEGKDGDVDNIDKGFIEKLEKEKENVSEYVEELKKKVSEMEGAMTG 232
             +M   D+Y      ++ K  D+ N+D+  IE L  E + + E +  L+K+  E E     
Sbjct:   239 FMKGGDTYEELDAEVQSKLKDLFNVDEFKIEGLAAENKRLHEEIARLEKE-RESE----- 292

Query:   233 PTXXXXXXXXXXXXXXXXNKFNAIIGELNXXXXXXXXXXXXXXXXIGKKVEEHKRICEEN 292
             P                  K+ A +  L                 +     E + + +EN
Sbjct:   293 PDRLVSLRKLRSSFQADVQKYQAYLANLESHTTILDQKMKSVNEEVETTEMEVEAMKQEN 352

Query:   293 EEFKKRVKLQTINARDVERMRRELQAVERDIADAENARNEWESKTWDLDSKLGRKFKELE 352
                +     Q  +  D+ER+  E   +++ I          E + W+ + K  R  + +E
Sbjct:   353 ARLQHIFDNQKYSVADIERINHERNELQQTINKLTKELEAEEHQLWNEELKYARNKEAIE 412

Query:   353 ALSMECNQAMKRLKL---ATEIQ----YSLNSNGSTPSEVMGVDYKSTLKPALESFADDV 405
                 E ++  ++LKL   + E      + ++ N       + V Y++ +K  L    +  
Sbjct:   413 TQLAEYHKLARKLKLIPISAENSKGHDFEIHFNPEAGPNCL-VKYRTQIKAPLMEIVNQT 471

Query:   406 KRSSVEKLEELISLQQQSSEMAAKIEGKRKRIDALQFHINEMETQLNLLSKETQEITKRC 465
             +    +  +  +SL+    ++ A +  K+  +  L+    +++   +   KE +E  ++C
Sbjct:   472 EEEIRKATQRKMSLEDTLEQVNAMVAEKKSSVKTLKEEAEKLDDLYHQKLKEAEEEEQKC 531

Query:   466 AEEAKKMEEDIQTEAHNLDMVEREAVEVLKASESKFQEAIRQCEEEIQI------RALDL 519
             A E + +E+  Q     ++    EA   L   + ++Q  ++   EE +       R L++
Sbjct:   532 ANELELLEKHKQLLESGVNEGLSEATNELHDIQRQYQIVMQTTTEESRKAGDNLNRLLEV 591

Query:   520 FAL-VDSVSKYKERMESKISK-----MNKGISETALTVSEAYK 556
                 V S+ KY +   SKI +     M++ +  T   + ++YK
Sbjct:   592 ITTHVVSIEKYLDEQNSKIDRDYEEFMSEDLLSTLTGILDSYK 634

GO:0007067 "mitosis" evidence=IEA

GO:0051301 "cell division" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005815 "microtubule organizing center" evidence=IEA

GO:0000132 "establishment of mitotic spindle orientation" evidence=IEA

GO:0000942 "condensed nuclear chromosome outer kinetochore" evidence=IEA

GO:0008608 "attachment of spindle microtubules to kinetochore" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0007052 "mitotic spindle organization" evidence=ISS

GO:0000776 "kinetochore" evidence=ISS

GO:0031262 "Ndc80 complex" evidence=ISS

GO:0000777 "condensed chromosome kinetochore" evidence=ISS

GO:0007059 "chromosome segregation" evidence=ISS

MGI|MGI:1914302 Ndc80 "NDC80 homolog, kinetochore complex component (S. cerevisiae)" [Mus musculus (taxid:10090)]

 Score = 158 (60.7 bits), Expect = 4.8e-17, Sum P(2) = 4.8e-17
 Identities = 69/372 (18%), Positives = 154/372 (41%)

Query:   176 YMYASDSYLNY---IEGKDGDVDNIDKGFIEKLEKEKENVSEYVEELKKKVSEMEGAMTG 232
             +M  +DS+      ++ K  D+  +D   +E LE E + ++E +  L+++  E E     
Sbjct:   236 FMTGADSFEEEDAELQAKLKDLYKVDASKLESLEAENKALNEQIARLEEE-RERE----- 289

Query:   233 PTXXXXXXXXXXXXXXXXNKFNAIIGELNXXXXXXXXXXXXXXXXIGKKVEEHKRICEEN 292
             P                   + A +  L                 IG+  +E + + +EN
Sbjct:   290 PNRLMSLKKLKASLQADVQNYKAYMSNLESHLAVLKQKSNSLDEEIGRVEQECETVKQEN 349

Query:   293 EEFKKRVKLQTINARDVERMRRELQAVERDIADAENARNEWESKTWDLDSKLGRKFKELE 352
                +  V  Q  +  D+ER+  E   +++ I          + + W+ + K  R  + +E
Sbjct:   350 TRLQSIVDNQKYSVADIERINHEKNELQQTINKLTKDLEAEQQQMWNEELKYARGKEAIE 409

Query:   353 ALSMECNQAMKRLKLATEIQYSLNSNGSTPSEVMGVDYKSTLKPALESFADDVKRSSVEK 412
             A   E ++  ++LKL  +        G+  S+  G D++    P  E+ A+ + +   + 
Sbjct:   410 AQLAEYHKLARKLKLIPK--------GAENSK--GYDFEIKFNP--EAGANCLVKYRTQV 457

Query:   413 LEELISLQQQSSEMAAKIEGKRKRIDALQFHINEMETQ----LNLLSKETQEITKRCAEE 468
                L  L  +S E   K   K++ ++     +N M+T+    + +L +E Q++     + 
Sbjct:   458 YAPLKELLNESEEEINKALNKKRHLEDTLEQLNTMKTESKNTVRMLKEEIQKLDDLHQQA 517

Query:   469 AKKMEEDIQTEAHNLDMVEREAVEVLKASESKFQEAIRQCEEEIQIRALDLFALVDSVSK 528
              K+ EE  +  A  L+ +E+    +L   ES   + + +  +E+     +    V + ++
Sbjct:   518 VKEAEEKDKKSASELESLEKHK-HLL---ESGVNDGLSEAMDELDAVQREYQLTVKTTTE 573

Query:   529 YKERMESKISKM 540
              + ++E+ + ++
Sbjct:   574 ERRKVENNLQRL 585

GO:0000089 "mitotic metaphase" evidence=ISO

GO:0000132 "establishment of mitotic spindle orientation" evidence=ISO

GO:0000775 "chromosome, centromeric region" evidence=ISO

GO:0000776 "kinetochore" evidence=ISO

GO:0000777 "condensed chromosome kinetochore" evidence=ISO

GO:0000942 "condensed nuclear chromosome outer kinetochore" evidence=ISO

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=ISO

GO:0005694 "chromosome" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

GO:0007052 "mitotic spindle organization" evidence=ISO

GO:0007059 "chromosome segregation" evidence=ISO

GO:0007067 "mitosis" evidence=IEA

GO:0008608 "attachment of spindle microtubules to kinetochore" evidence=ISO

GO:0031262 "Ndc80 complex" evidence=ISO

GO:0051301 "cell division" evidence=IEA

POMBASE|SPBC11C11.03 ndc80 "spindle pole body protein Ndc80" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 225 (84.3 bits), Expect = 2.3e-15, P = 2.3e-15
 Identities = 102/501 (20%), Positives = 220/501 (43%)

Query:    58 RSHQSSAIRAINAHLSS-HSFHIAFPLKQVPSVKDITDVIKFLISQLD--YPSTTKFEED 114
             R  Q  A + +N  L S  S  +    + +PS ++   + K L ++LD  +    ++EED
Sbjct:   104 RYQQECATQVVNYLLESGFSQPLGLNNRFMPSTREFAAIFKHLYNKLDPNFRFGARYEED 163

Query:   115 LFVVLKSLSCPF--KINKSTLRSPNSPHNWPAYLALIHWLVQIASYN-------YHLTTN 165
             +   LK+L+ PF   I++S L +  SPH WPA L ++HW+V +           Y +  N
Sbjct:   164 VTTCLKALNYPFLDSISRSRLVAIGSPHVWPAILGMLHWVVSLIQCTEKAVAMVYTVEQN 223

Query:   166 S-KAFVENNSMYMYASDSYLNYIEG--KDGDVDNIDKGFIEKLEKEKENVSEYVEELKKK 222
             S    + +  ++ Y   +Y  Y++   ++ + +   K    +  ++  N +E ++   ++
Sbjct:   224 SLDDHLVDKVLFDYLVRTYHLYLDESPEESEPEKELKATFNQQNQDLYNQTEALKSTNEE 283

Query:   223 -VSEMEGAMTGPTXXXXXXXXXXXXXXXXNKFNAIIGELNXXXXXXXXXXXXXXXXIGKK 281
              +++++ A    +                 KF + +  +                 I +K
Sbjct:   284 LINQIKSAEELDSAIQVLEERYRTMQRDEVKFQSAMSGMKSKMESRTNLMKQLQVNIEEK 343

Query:   282 VEEHKRICEENEEFKKRVKLQTINARDVERMRRELQAVERDIADAENARNEWESKTWDLD 341
               + + + E+ +  K +V+ Q I+  + E+M  E + ++R++    +  +E   + +D D
Sbjct:   344 ESQLQLLKEKRDSLKYQVENQDISISEFEKMVSEREQLDRNLNMIGSKISELRKEVFDTD 403

Query:   342 SKLGRKFKELEALSMECNQAMKRLKLATEIQYSLNSNGSTPSEVM--GVDYKST-LKPAL 398
               +      LE    + N    R+ +   I    ++N     E+   G +Y +  LK  +
Sbjct:   404 LLIQASIDSLEKKVQKFNSLAYRIGIVP-IAAIRSANNDFELEINPEGPNYINLDLKNKV 462

Query:   399 ESFADDVKRS-SVEKLEELISLQQQSSEMAAKIEGKRKRIDALQFHINEMETQLNLLSKE 457
               F ++V+RS ++E  EE    Q +S ++   ++     I  LQ  +  +E++L  +  E
Sbjct:   463 RPFINEVRRSITLEFHEE----QNKSLKLQEHVDTVNDLIAELQDELRGIESRLTSVLSE 518

Query:   458 TQEITKRCAEEAKKMEEDIQTEAHNLDMVEREAVEVLKASESKFQEAIRQCEEEIQIRAL 517
                + +  +EE  K   D ++     D +ERE ++ LK S      ++ Q ++ IQ   +
Sbjct:   519 CNMLRETASEE--KNAFDAES-----DKLERE-LQQLKLSS---HNSMLQLDQRIQSINI 567

Query:   518 DLFALVDSVSKYKERMESKIS 538
             +   +  +  +YK  +  +++
Sbjct:   568 EADQIAHACMEYKNNIYKEVA 588

GO:0000070 "mitotic sister chromatid segregation" evidence=IC

GO:0000778 "condensed nuclear chromosome kinetochore" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0008608 "attachment of spindle microtubules to kinetochore" evidence=IDA

GO:0031262 "Ndc80 complex" evidence=TAS

GO:0031617 "NMS complex" evidence=IDA

GO:0044732 "mitotic spindle pole body" evidence=IDA

GO:0051455 "attachment of spindle microtubules to kinetochore involved in homologous chromosome segregation" evidence=IDA

GO:0071444 "cellular response to pheromone" evidence=IMP

ZFIN|ZDB-GENE-030131-904 ndc80 "NDC80 homolog, kinetochore complex component (S. cerevisiae)" [Danio rerio (taxid:7955)]

 Score = 150 (57.9 bits), Expect = 2.4e-15, Sum P(2) = 2.4e-15
 Identities = 51/178 (28%), Positives = 81/178 (45%)

Query:    57 DRSHQSSAIRAINAHLSSHSFHIAFPLK--QVPSVKDITDVIKFLISQLDYPS----TTK 110
             D++     I+ +   L    F  +  +K  Q PS K+   + +F+ + L+ PS    T K
Sbjct:    86 DKAFVQQCIKQLYEFLVDRGFPGSITVKALQSPSTKEFLKIYEFIYNFLE-PSFQMPTAK 144

Query:   111 FEEDLFVVLKSLSCPFKINKSTLRSPNSPHNWPAYLALIHWLVQIASYNYHLTTNSKAF- 169
              EE++  +LK L  PF ++KS++ S  +PH WP  L  + WL+               F 
Sbjct:   145 VEEEIPRMLKDLGYPFALSKSSMYSIGAPHTWPLALGALIWLMDAVKLFGGQREQDLLFS 204

Query:   170 ------------VENNSMYM-YASDSYLNYIEGKDGDVDNIDKGFIEKLEKEKENVSE 214
                          E N + M Y SD+Y  +++G D   D+ D  F+ KL+K   NV E
Sbjct:   205 DFSDELCDLEDRTEYNKLIMEYCSDTYNKFMQGAD-TFDDEDDDFLYKLKK-LYNVDE 260

GO:0007052 "mitotic spindle organization" evidence=ISS

GO:0000776 "kinetochore" evidence=IEA;ISS

GO:0000777 "condensed chromosome kinetochore" evidence=ISS

GO:0007059 "chromosome segregation" evidence=ISS

GO:0031262 "Ndc80 complex" evidence=ISS

GO:0005694 "chromosome" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

GO:0051301 "cell division" evidence=IEA

GO:0000775 "chromosome, centromeric region" evidence=IEA

GO:0007067 "mitosis" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|G4NCT8 MGG_01027 "Kinetochore protein ndc-80" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 126 (49.4 bits), Expect = 4.8e-10, Sum P(2) = 4.8e-10
 Identities = 47/194 (24%), Positives = 95/194 (48%)

Query:    57 DRSHQSSAIRAINAHLSSHSFHIAFP--LKQ----VPSVKDITDVIKFLISQLD--YPST 108
             DRS+Q+   + +  +L+ H+F +     L Q     P+ KD   + ++L +++D  Y   
Sbjct:   160 DRSYQNRIGQELLDYLTQHNFELDMNHNLSQNVIKSPTQKDFNYIFQWLYNRIDPSYKFM 219

Query:   109 TKFEEDLFVVLKSLSCPFK--INKSTLRSPNSPHNWPAYLALIHWLVQIASY--NYHLTT 164
                ++++  +LK L  P++  I KS + +     NW  +L ++HW++Q+A     + L  
Sbjct:   220 KNIDQEVPPLLKQLRYPYEKGITKSQIAAVGG-QNWSTFLGMLHWMMQLAQMIEGFALNR 278

Query:   165 NSKAFVE-------NNSMYMYASDSYLNYIEGKDGDV-----DNIDKGFIEKLEKEKENV 212
              + A +E       ++  + + S +Y  ++ G D  V     D + K  IE++E   E  
Sbjct:   279 YADACLEAGVDTVGDHITFDFLSAAYAEWL-GMDDSVSEEEADRLLKPHIEEMEAAFEQA 337

Query:   213 S-EYVEELKKKVSE 225
             + ++ EEL+   +E
Sbjct:   338 NAKHFEELRMLEAE 351

GO:0003674 "molecular_function" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh4_pg.C_LG_I001269 hypothetical protein (573 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	576
pfam03801	159	pfam03801, Ndc80_HEC, HEC/Ndc80p family	5e-31
COG5185	622	COG5185, HEC1, Protein involved in chromosome segr	3e-24
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	7e-13
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	1e-10
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	3e-10
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	5e-09
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	6e-09
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	3e-08
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	8e-08
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	4e-07
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	4e-07
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	6e-07
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	3e-06
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	1e-05
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	2e-05
PRK03918	880	PRK03918, PRK03918, chromosome segregation protein	3e-05
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	6e-05
PRK03918	880	PRK03918, PRK03918, chromosome segregation protein	1e-04
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	1e-04
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	2e-04
pfam07888	546	pfam07888, CALCOCO1, Calcium binding and coiled-co	2e-04
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	2e-04
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	4e-04
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	5e-04
PRK03918	880	PRK03918, PRK03918, chromosome segregation protein	5e-04
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	5e-04
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	7e-04
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	7e-04
PRK02224	880	PRK02224, PRK02224, chromosome segregation protein	9e-04
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	0.001
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	0.002
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	0.003
pfam04156	186	pfam04156, IncA, IncA protein	0.003

>gnl|CDD|217738 pfam03801, Ndc80_HEC, HEC/Ndc80p family

 Score =  117 bits (296), Expect = 5e-31
 Identities = 52/154 (33%), Positives = 76/154 (49%), Gaps = 11/154 (7%)

Query: 28  GSRDSDASFASSRPSSIGM-GRASAADLYTDRSHQSSAIRAINAHLSSHSFHIAFPLK-- 84
           GSR S AS +SS+PSS+    R        D++ QS  I+ I   L  + F I    K  
Sbjct: 10  GSRTSLASSSSSQPSSVPRDPRPL-----RDKAFQSQCIQEIYEFLVENGFEIEISPKTL 64

Query: 85  QVPSVKDITDVIKFLISQLD--YPSTTKFEEDLFVVLKSLSCPF-KINKSTLRSPNSPHN 141
           + P+ KD  ++ KFL ++LD  Y    K EE++  +LK L  P+  I KS L +   PH 
Sbjct: 65  KSPTQKDFIEIFKFLYNRLDPSYKFGKKIEEEVPSILKDLGYPYLTITKSQLSAVGGPHT 124

Query: 142 WPAYLALIHWLVQIASYNYHLTTNSKAFVENNSM 175
           WP +L  +HWLV++  Y   L  +        + 
Sbjct: 125 WPTFLGALHWLVELIKYLEALLNHDYDEACEGNE 158

Members of this family are components of the mitotic spindle. It has been shown that Ndc80/HEC from yeast is part of a complex called the Ndc80p complex. This complex is thought to bind to the microtubules of the spindle. Length = 159

>gnl|CDD|227512 COG5185, HEC1, Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]

 Score =  106 bits (266), Expect = 3e-24
 Identities = 97/507 (19%), Positives = 217/507 (42%), Gaps = 31/507 (6%)

Query: 57  DRSHQSSAIRAINAHLSSHSFHIAFPLK--QVPSVKDITDVIKFLISQLD--YPSTTKFE 112
           D+++Q +    I  +L  + F I   +K  + PS K    + K+L  +LD  +  T + E
Sbjct: 102 DKNYQQACQEEIYDYLKENGFDIPISIKFLKQPSQKGFIIIFKWLYLRLDPGFGFTKRIE 161

Query: 113 EDLFVVLKSLSCPF--KINKSTLRSPNSPHNWPAYLALIHWLVQIASYNYHLTTNSKAFV 170
            +++ +LK+L  PF   INKS L S   PHNWP  L ++HW+V++           K   
Sbjct: 162 NEVYQILKNLRYPFLESINKSQL-SAIGPHNWPKILGMLHWMVRLIIKLDMCLQPLKTLD 220

Query: 171 ENNS--------MYMYASDSYLNYIEGKDGDVDNIDK------GFIEKLEKEKENVSEYV 216
           + +         ++ Y ++SY ++++ +D    +  +       F+  +  +  N+    
Sbjct: 221 QQDRYELMVEKLLFDYFTESYKSFLKLEDNYEPSEQELKLGFEKFVHIINTDIANLKTQN 280

Query: 217 EELKKKVSEMEGAMTGPTEREKLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKER 276
           + L +K+ E   AM    + + L ++   L+ D NK+   +  +  + ++    +E+ + 
Sbjct: 281 DNLYEKIQE---AMKISQKIKTLREKWRALKSDSNKYENYVNAMKQKSQEWPGKLEKLKS 337

Query: 277 EIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRRELQAVERDIADAENARNEWESK 336
           EI  K EE K +    +E  K+++ Q I+    E M +E + + R++       ++    
Sbjct: 338 EIELKEEEIKALQSNIDELHKQLRKQGISTEQFELMNQEREKLTRELDKINIQSDKLTKS 397

Query: 337 TWDLDSKLGRKFKELEALSMECNQAMKRLKLATEI------QYSLNSNGSTPSEVMGVDY 390
                 +    FK LE    + +  ++ +  +           SL  N        G   
Sbjct: 398 VKSRKLEAQGIFKSLEKTLRQYDSLIQNITRSRSQIGHNVNDSSLKINIEQLFPK-GSGI 456

Query: 391 KSTLKPALESFADDVKRSSVEKLEELISLQQQSSEMAAKIEGKRKRIDALQFHINEMETQ 450
             ++K ++    D+++     +  + I+L++    +   I    + ++ L+  ++E  ++
Sbjct: 457 NESIKKSILELNDEIQERIKTEENKSITLEEDIKNLKHDINELTQILEKLELELSEANSK 516

Query: 451 LNLLSKETQEITKRCAEEAKKMEEDIQTEAHNLDMVEREAVEVLKASESKFQEAIRQCEE 510
             L  +E +        E +K+E+++            +A ++++++E K  E       
Sbjct: 517 FELSKEENERELVAQRIEIEKLEKELNDLNLLSKTSILDAEQLVQSTEIKLDELKVDLNR 576

Query: 511 EIQIRALDLFALVDSVSKYKERMESKI 537
           +       +  ++D  SK+K  ++S +
Sbjct: 577 KRYKIHKQVIHVIDITSKFKINIQSSL 603

Length = 622

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 71.2 bits (175), Expect = 7e-13
 Identities = 80/384 (20%), Positives = 164/384 (42%), Gaps = 23/384 (5%)

Query: 202  IEKLEKEKENVSEYVEELKKKVSEMEGAMT-GPTEREKLEKEKCVLEEDLNKFNAIIGEL 260
            IE+LE++ E + E + EL+K ++E+   +     E E+L KE   L   ++     +  L
Sbjct: 679  IEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARL 738

Query: 261  NMRKEKMEKLVEEKEREIG----KKVEEHKRICEENEEFKKRVKLQTINARDVERMRREL 316
                E++E+ + +  +E+     +  E  +R+ E  EE  +           +E+++ EL
Sbjct: 739  EAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEEL 798

Query: 317  QAVERDIADAENARNEWESKTWDLDSKLGRKFKELEALSMECNQAMKRLKLATEIQYSLN 376
            +A+   + +          +  +L  +L    + + A         ++++  +E   SL 
Sbjct: 799  KALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLA 858

Query: 377  SNGSTPSEVMGVDYKSTLKPALESFADDVKRSSVEKLEELISLQQQSSEMAAKIEGKRKR 436
            +      E++       L+  LE+   + + S  E L  L S  ++ SE   ++E KR  
Sbjct: 859  AEIEELEELI-----EELESELEA-LLNERASLEEALALLRSELEELSEELRELESKRSE 912

Query: 437  I----DALQFHINEMETQLNLLSKETQEITKRCAEEAKKMEEDIQTEAHNLDMVEREAVE 492
            +    + L+  + ++E +L  L      + +R +EE     E+ +   + ++  E EA  
Sbjct: 913  LRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEARR 972

Query: 493  VLKASESKFQE-------AIRQCEEEIQIRALDLFALVDSVSKYKERMESKISKMNKGIS 545
             LK  E+K +E       AI + EE  + R   L A  + +++ KE +E  I ++++   
Sbjct: 973  RLKRLENKIKELGPVNLAAIEEYEELKE-RYDFLTAQKEDLTEAKETLEEAIEEIDREAR 1031

Query: 546  ETALTVSEAYKNSLPAQFSIAFGE 569
            E      +    +    F   FG 
Sbjct: 1032 ERFKDTFDQVNENFQRVFPKLFGG 1055

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 64.3 bits (157), Expect = 1e-10
 Identities = 77/311 (24%), Positives = 146/311 (46%), Gaps = 25/311 (8%)

Query: 203 EKLEKEKENVSEYVEELKKKVSEMEGAM------TGPTEREKLEKEKCVLEEDLNKFNAI 256
           E+L +E+E    Y + L K+  E EG            ++E +E++   LEE+L K    
Sbjct: 201 ERLRREREKAERY-QALLKEKREYEGYELLKEKEALERQKEAIERQLASLEEELEKLTEE 259

Query: 257 IGELNMRKEKMEKLVEEKEREIGKKVE-EHKRICEENEEFK-KRVKLQTINARDVERMRR 314
           I EL  R E++E+L+EE  ++I    E E  R+ E+  E + +   L+    R +    R
Sbjct: 260 ISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIASLE----RSIAEKER 315

Query: 315 ELQAVERDIADAENARNEWESKTWDLDSKLGRKFKELEALSMECNQAMKRL-KLATEIQY 373
           EL+  E  +A  E   ++  ++  +L+ ++  + K  + L+ E  +  + L  L  E++ 
Sbjct: 316 ELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEE 375

Query: 374 SLNSNGSTPSEVMGVDYKSTLKPALESFADDVKRSSVEKLEELISLQQQSSEMAAKIEGK 433
                  T  E+   DY+  L+  L+   +++KR      EEL  L ++ +++ A I G 
Sbjct: 376 VDKEFAETRDELK--DYREKLE-KLKREINELKRELDRLQEELQRLSEELADLNAAIAGI 432

Query: 434 RKRIDALQFHINEMETQLNLLSKETQEITKRCAEEAKKMEEDIQTEAHNLDMVEREAVEV 493
             +I+ L+    E E +   + K+  ++ ++ A +  K E+++       D VE+E    
Sbjct: 433 EAKINELE---EEKEDKALEIKKQEWKL-EQLAADLSKYEQELYDLKEEYDRVEKE---- 484

Query: 494 LKASESKFQEA 504
           L   + +  EA
Sbjct: 485 LSKLQRELAEA 495

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 62.8 bits (153), Expect = 3e-10
 Identities = 73/319 (22%), Positives = 147/319 (46%), Gaps = 43/319 (13%)

Query: 202 IEKLEKEKENVSEYVEELKKKVSEMEGAMTGPTEREKLEKEKCVLEEDLNKFNAIIGELN 261
           +EKLE++ E    Y +ELK ++ E+E A+    + ++L KE   LEE+L++    +    
Sbjct: 202 LEKLERQAEKAERY-QELKAELRELELALLL-AKLKELRKELEELEEELSRLEEEL---- 255

Query: 262 MRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVE----RMRRELQ 317
              E++++ +EE E+EI +   E + + EE EE ++ +        ++E     +R  L+
Sbjct: 256 ---EELQEELEEAEKEIEELKSELEELREELEELQEELLELKEEIEELEGEISLLRERLE 312

Query: 318 AVERDIADAENARNEWESKTWDLDSKLGRKFKELEALSMECNQAMKRLKLATEIQYSLNS 377
            +E ++ + E    E + K       L  + +E E L  E  Q +  L+ A         
Sbjct: 313 ELENELEELEERLEELKEKI----EALKEELEERETLLEELEQLLAELEEA--------- 359

Query: 378 NGSTPSEVMGVDYKSTLKPALESFADDVKRSSVEKLEELISLQQQSSEMAAKIEGKRKRI 437
                        K  L+  L +  ++++       EEL  L+ + +E+  ++E  ++ I
Sbjct: 360 -------------KEELEEKLSALLEELEELFEALREELAELEAELAEIRNELEELKREI 406

Query: 438 DALQFHINEMETQLNLLSKETQEITKRCAEEAKKMEEDIQTEAHNLDMVEREAVEVLKAS 497
           ++L+  +  +  +L  L +E +E+     EE +   E++  E   L+    E  + LK  
Sbjct: 407 ESLEERLERLSERLEDLKEELKELEAE-LEELQTELEELNEELEELEEQLEELRDRLKEL 465

Query: 498 ESKF---QEAIRQCEEEIQ 513
           E +    QE +++ E+E+ 
Sbjct: 466 ERELAELQEELQRLEKELS 484

Length = 1163

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 58.9 bits (143), Expect = 5e-09
 Identities = 68/312 (21%), Positives = 145/312 (46%), Gaps = 34/312 (10%)

Query: 235 EREKLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEE 294
           ++EK  +E   +EE++ + + II E     +++E+L  E+E     K E ++ + +E  E
Sbjct: 171 KKEKALEELEEVEENIERLDLIIDEKR---QQLERLRRERE-----KAERYQALLKEKRE 222

Query: 295 FKKRVKLQTINARDVERMRRELQAVERDIADAENARNEWESKTWDLDSKLGRKFKELEAL 354
           ++          ++ E + R+ +A+ER +A  E    +   +  +L+ +L    + LE L
Sbjct: 223 YE-----GYELLKEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEEL 277

Query: 355 SMECNQAMKRLKLATEIQYSLNSN-GSTPSEVMGVDYKSTLKPALESFADDVKRSS--VE 411
           + +         L  E Q  +    G   +E+      ++L+ ++     +++ +   + 
Sbjct: 278 NKKIK------DLGEEEQLRVKEKIGELEAEI------ASLERSIAEKERELEDAEERLA 325

Query: 412 KLEELI-SLQQQSSEMAAKIEGKRKRIDALQFHINEMETQLNLLSKETQEITKRCAEEAK 470
           KLE  I  L  +  E+  +IE +RKR D L     E++ +L  L  E +E+ K    E +
Sbjct: 326 KLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKE-FAETR 384

Query: 471 KMEEDIQTEAHNLDMVEREAVEVLKASESKFQEAIRQCEEEIQIRALDLFALVDSVSKYK 530
              +D + +   L+ ++RE +  LK    + QE +++  EE+      +  +   +++ +
Sbjct: 385 DELKDYREK---LEKLKRE-INELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELE 440

Query: 531 ERMESKISKMNK 542
           E  E K  ++ K
Sbjct: 441 EEKEDKALEIKK 452

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 58.6 bits (142), Expect = 6e-09
 Identities = 64/318 (20%), Positives = 136/318 (42%), Gaps = 43/318 (13%)

Query: 235 EREKLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEE 294
           E  +LE +   LEE+L      +  L    E++ + +EE ER++ +   E   + EE E+
Sbjct: 675 ELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRELAALEEELEQ 734

Query: 295 FKKRVKLQTINARDVERMRRELQA----VERDIADAENARNEWESKTWDLDSKLGRKFKE 350
            + R++       ++E    ELQ     +E ++   E A  + + +  +L+ K     +E
Sbjct: 735 LQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEIEELEEKRQALQEE 794

Query: 351 LEALSMECNQAMKRLKLATEIQYSLNSNGSTPSEVMGVDYKSTLKPALESFADDVKRSSV 410
           LE L  E  +A +RL                               ALE   + +++   
Sbjct: 795 LEELEEELEEAERRLD------------------------------ALERELESLEQRRE 824

Query: 411 EKLEELISLQQQSSEMAAKIEGKRKRIDALQFHINEMETQLNLLSKETQEITKRCA---E 467
              +E+  L+++  E+  K++   + ++ L+  + E++ +L  L  E +E+        E
Sbjct: 825 RLEQEIEELEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEE 884

Query: 468 EAKKMEEDIQTEAHNLDMVEREAVEVLKASESKFQEAIRQCEEEIQIRALDL-----FAL 522
           E +++EE+++     L  ++ E +E L+    + +  + + E E+     +L       L
Sbjct: 885 EKEELEEELRELESELAELKEE-IEKLRERLEELEAKLERLEVELPELEEELEEEYEDTL 943

Query: 523 VDSVSKYKERMESKISKM 540
              + +  ER+E +I  +
Sbjct: 944 ETELEREIERLEEEIEAL 961

Length = 1163

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 56.2 bits (136), Expect = 3e-08
 Identities = 63/315 (20%), Positives = 132/315 (41%), Gaps = 32/315 (10%)

Query: 202 IEKLEKEKENVSEYVEELKKKVSEMEGAMTGPTER-EKLEKEKCVLEEDLNKFNAIIGEL 260
           +E L++E  ++   +  ++ ++ E+   ++  + +  ++EKE   LE++  K    + EL
Sbjct: 683 LEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEEL 742

Query: 261 NMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKK-RVKLQTINARDVERMRRELQAV 319
              +E +  L +E E    +  E   RI E  E+  K    L  + AR       E+QA 
Sbjct: 743 ---EEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSRIPEIQAE 799

Query: 320 ERDIADAENARNEWESKTWDLDSKLGRKFKELEALSMECNQAMKRLKLATEIQYSLNSNG 379
              +   E   +  E++  +++ KL R   E E L  E  Q ++  ++  + Q       
Sbjct: 800 LSKL---EEEVSRIEARLREIEQKLNRLTLEKEYLEKE-IQELQEQRIDLKEQ------- 848

Query: 380 STPSEVMGVDYKSTLKPALESFADDVKRSSVEKLEELISLQQQSSEMAAKIEGKRKRIDA 439
                            ++E   +++     E  EEL  L+    ++ +++   +K  D 
Sbjct: 849 ---------------IKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDE 893

Query: 440 LQFHINEMETQLNLLSKETQEITKRCAEEAKKMEEDIQTEAHNLDMVEREAVEVLK-ASE 498
           L+  + E+E ++  L  + ++  KR +E   K+E   +  +   D    +     +  S 
Sbjct: 894 LEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEELSL 953

Query: 499 SKFQEAIRQCEEEIQ 513
              Q  +++ EEEI+
Sbjct: 954 EDVQAELQRVEEEIR 968

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 55.1 bits (133), Expect = 8e-08
 Identities = 69/353 (19%), Positives = 154/353 (43%), Gaps = 29/353 (8%)

Query: 234 TEREKLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKER--EIGKKVEEHKRICEE 291
             +E+ E++    EE+L +   ++ EL  + EK+E+  E+ ER  E+  ++ E +     
Sbjct: 172 ERKEEAERKLERTEENLERLEDLLEELEKQLEKLERQAEKAERYQELKAELRELELALLL 231

Query: 292 NEEFKKRVKLQTINARDVERMRRELQAVERDIADAENARNEWESKTWDLDSKLGRKFKEL 351
            +  + R +L+ +   ++ R+  EL+ ++ ++ +AE    E +S+  +L  +L    +EL
Sbjct: 232 AKLKELRKELEELE-EELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEEL 290

Query: 352 EALSMECNQAMKRLKLATEIQYSLNSNGSTPSEV------------MGVDYKSTLKPALE 399
             L  E  +    + L  E    L +      E               ++ + TL   LE
Sbjct: 291 LELKEEIEELEGEISLLRERLEELENELEELEERLEELKEKIEALKEELEERETLLEELE 350

Query: 400 SFADDVKRSSVEKLEELISLQQQSSEMAAKIEGKRKRIDALQFHINEMETQLNLLSKETQ 459
               +++  + E+LEE +S   +  E     E  R+ +  L+  + E+  +L  L +E +
Sbjct: 351 QLLAELEE-AKEELEEKLSALLEELE--ELFEALREELAELEAELAEIRNELEELKREIE 407

Query: 460 EITKRCAEEAKKMEEDIQTEAHNLDMVE---------REAVEVLKASESKFQEAIRQCEE 510
            + +R    ++++E+  +        +E          E +E L+    + ++ +++ E 
Sbjct: 408 SLEERLERLSERLEDLKEELKELEAELEELQTELEELNEELEELEEQLEELRDRLKELER 467

Query: 511 EIQIRALDLFALVDSVSKYKERMESKISKMNKGISETALTVSEAYKNSLPAQF 563
           E+     +L  L   +S  + R++    +  +  S+    V EA ++ LP  +
Sbjct: 468 ELAELQEELQRLEKELSSLEARLDR--LEAEQRASQGVRAVLEALESGLPGVY 518

Length = 1163

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 52.8 bits (127), Expect = 4e-07
 Identities = 64/305 (20%), Positives = 125/305 (40%), Gaps = 50/305 (16%)

Query: 217 EELKKKVSEMEGAMTGPTEREKLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKER 276
           EEL++++ E E       E E+L  E   LEE L +    + EL    E+++K +     
Sbjct: 242 EELQEELKEAE------EELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALAN 295

Query: 277 EIGKKVEEHKRICEENEEF--KKRVKLQTINAR----------DVERMRRELQAVERDIA 324
           EI  ++E+ K+I  E      ++  +L+               ++  +  +L+ ++ ++ 
Sbjct: 296 EI-SRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELE 354

Query: 325 DAENARNEWESKTWDLDSKLGRKFKELEALSMECNQAMKRLKLAT-EIQYSLNSNGSTPS 383
             E    E E++  +L+S+L    ++LE L  +  Q   ++     EI+           
Sbjct: 355 SLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIER---------- 404

Query: 384 EVMGVDYKSTLKPALESFADDVKRSSVEKLEELISLQ-QQSSEMAAKIEGKRKRIDALQF 442
                     L+  LE   D  +R   E  E L  L+  +  E+ A++E   + ++ LQ 
Sbjct: 405 ----------LEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQE 454

Query: 443 HINEMETQLNLLSKETQEITKRCAEEAKKMEEDIQTEAHNLDMVEREAVEVLKASESKFQ 502
            +  +E  L  L +E +E      +     E ++      LD +ER     L+ +   F 
Sbjct: 455 ELERLEEALEELREELEEAE----QALDAAERELAQLQARLDSLER-----LQENLEGFS 505

Query: 503 EAIRQ 507
           E ++ 
Sbjct: 506 EGVKA 510

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 52.8 bits (127), Expect = 4e-07
 Identities = 53/281 (18%), Positives = 118/281 (41%), Gaps = 26/281 (9%)

Query: 247 EEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINA 306
            E+L++   I+ EL  + + +E+  E        K E +K +  E  E +  +       
Sbjct: 185 RENLDRLEDILNELERQLKSLERQAE--------KAERYKELKAELRELELALL-----V 231

Query: 307 RDVERMRRELQAVERDIADAENARNEWESKTWDLDSKLGRKFKELEALSMECNQAMKRLK 366
             +E +R EL+ ++ ++ +AE    E  ++  +L+ KL     E+  L  E  +  K L 
Sbjct: 232 LRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELY 291

Query: 367 LATEIQYSLNSNGSTPSEVMGVDYKSTLKPALESFADDVKRSSVEKLEELISLQQQSSEM 426
                   L        E +           LE+  ++++    E  EEL  L+++  E+
Sbjct: 292 ALANEISRLEQQKQILRERL--ANLERQLEELEAQLEELESKLDELAEELAELEEKLEEL 349

Query: 427 AAKIEGKRKRIDALQFHINEMETQLNLLSKETQEITKRCAEEAKK----------MEEDI 476
             ++E     ++ L+  + E+E++L  L ++ + +  + A+   +          +E  +
Sbjct: 350 KEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARL 409

Query: 477 QTEAHNLDMVEREAVEVL-KASESKFQEAIRQCEEEIQIRA 516
           +      + +++E  E+L K  E++ +E   + EE  +   
Sbjct: 410 ERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELE 450

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 52.4 bits (126), Expect = 6e-07
 Identities = 76/345 (22%), Positives = 144/345 (41%), Gaps = 36/345 (10%)

Query: 202 IEKLEKEKENVSEYVEELKKKVSEMEGAMTGPTEREKLEKEKCVLEEDLNKFNAIIGELN 261
           ++ LE++ E    Y +ELK ++ E+E A+      E+L +E   L+E+L +    + EL 
Sbjct: 202 LKSLERQAEKAERY-KELKAELRELELALLV-LRLEELREELEELQEELKEAEEELEELT 259

Query: 262 MRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRRELQAVER 321
              +++E+ +EE   E+ +     + I E  +E        +   +  + +R  L  +ER
Sbjct: 260 AELQELEEKLEELRLEVSEL---EEEIEELQKELYALANEISRLEQQKQILRERLANLER 316

Query: 322 DIADAENARNEWESKTWDLDSKLGRKFKELEALSMECNQAMKRLKLATEIQYSLNSNGST 381
            + + E    E ESK  +L  +L    ++LE L  E       L+        L S    
Sbjct: 317 QLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESR--- 373

Query: 382 PSEVMGVDYKSTLKPALESFADDVKRSSVEKLEELISLQQQSSEMAAKIEGKRKRIDALQ 441
                       L+  LE+    V     +   ++ SL  +   + A++E    R + LQ
Sbjct: 374 ---------LEELEEQLETLRSKVA----QLELQIASLNNEIERLEARLERLEDRRERLQ 420

Query: 442 FHINEMETQLNLLSKETQEITKRCAEEAKKMEEDIQTEAHNLDMVEREAVEVLKASESKF 501
             I E+  +  L   E +E+     E  ++  E++Q E   L     EA+E L+    + 
Sbjct: 421 QEIEELLKK--LEEAELKELQAELEEL-EEELEELQEELERL----EEALEELREELEEA 473

Query: 502 QEAIRQCEEEIQIRALDLFALVDSVSKYKERMESKISKMNKGISE 546
           ++A+   E E+      L +L        ER++  +   ++G+  
Sbjct: 474 EQALDAAERELAQLQARLDSL--------ERLQENLEGFSEGVKA 510

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 50.1 bits (120), Expect = 3e-06
 Identities = 56/282 (19%), Positives = 112/282 (39%), Gaps = 23/282 (8%)

Query: 235 EREKLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEE 294
           E E+LE++   LEE +        EL     ++ K +EE E E+ +  +E + +  +   
Sbjct: 678 EIEELEEKIEELEEKIA-------ELEKALAELRKELEELEEELEQLRKELEELSRQISA 730

Query: 295 FKKRVKLQTINARDVERMRRELQAVERDIADAENARNEWESKTWDLDSKLGRKFKELEAL 354
            +K +         +E    +L    +++ + E    E E +  + + +L     E+E L
Sbjct: 731 LRKDLARLEAEVEQLEERIAQLS---KELTELEAEIEELEERLEEAEEELAEAEAEIEEL 787

Query: 355 SMECNQAMKRLKLATEIQYSLNSNGSTPSEVMGVDYKSTLKPALESFADDVKRSSVEKLE 414
             +  Q  + LK   E    L +  +  +E             L    + ++R       
Sbjct: 788 EAQIEQLKEELKALREALDELRAELTLLNEEAA---------NLRERLESLERRIAATER 838

Query: 415 ELISLQQQSSEMAAKIEGKRKRIDALQFHINEMETQLNLLSKE---TQEITKRCAEEAKK 471
            L  L++Q  E++  IE     I+ L+  I E+E++L  L  E    +E       E ++
Sbjct: 839 RLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEE 898

Query: 472 MEEDIQTEAHNLDMVEREAVEVLKASESKFQEAIRQCEEEIQ 513
           + E+++        + RE  E L+   ++ +  +   E  I 
Sbjct: 899 LSEELRELESKRSELRRELEE-LREKLAQLELRLEGLEVRID 939

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 47.8 bits (114), Expect = 1e-05
 Identities = 53/275 (19%), Positives = 118/275 (42%), Gaps = 33/275 (12%)

Query: 306 ARDVERMRRELQAVERDIADAENARNEWESKTWDLDSKLGRKFKELEALSMECNQAMKRL 365
              +E ++REL +++ ++   EN  +E   +  D   K+G   KE+E L  E  +  +RL
Sbjct: 680 RERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERL 739

Query: 366 K-LATEIQYSLNSNGSTPSEVMGVDYK--------STLKPALESFADDVKRSSVEKLEEL 416
           + L  ++        +  SE+  ++ +          L+ AL      +  S + +++  
Sbjct: 740 EELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSRIPEIQAE 799

Query: 417 ISLQQQSSEMAAKIEGKRKRIDALQFHINEMETQLNLLSKETQEITKRCAEEAKKMEEDI 476
           +S          K+E +  RI+A    + E+E +LN L+ E     K   E+  +  ++ 
Sbjct: 800 LS----------KLEEEVSRIEAR---LREIEQKLNRLTLE-----KEYLEKEIQELQEQ 841

Query: 477 QTEAHNLDMVEREAVEVLKASESKFQEAIRQCEEEIQIRALDLFALVDSVSKYKERMESK 536
           + +         + +E L   + + +E +    EE++    DL + +  + K ++ +E++
Sbjct: 842 RIDLKEQIKSIEKEIENLNGKKEELEEEL----EELEAALRDLESRLGDLKKERDELEAQ 897

Query: 537 ISKMNKGISETALTVSEAYKN--SLPAQFSIAFGE 569
           + ++ + I E    + +  K    L A+      E
Sbjct: 898 LRELERKIEELEAQIEKKRKRLSELKAKLEALEEE 932

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 47.0 bits (112), Expect = 2e-05
 Identities = 54/280 (19%), Positives = 126/280 (45%), Gaps = 19/280 (6%)

Query: 202  IEKLEKEKENVSEYVEELKKKVSEMEGAMTGPTE-REKLEKEKCVLEEDLNKFNAIIGEL 260
            +E+L++  E + E +E L++ +++++  +    E R+ L++E   LEE+L +    +  L
Sbjct: 753  LEELQERLEELEEELESLEEALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDAL 812

Query: 261  NMRKEKMEKLVEEKEREI---GKKVEEHKRICEENEEFKKRVKLQTINAR-DVERMRREL 316
                E +E+  E  E+EI    +++EE +   +E EE  + ++ +    + ++E +  E 
Sbjct: 813  ERELESLEQRRERLEQEIEELEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEK 872

Query: 317  QAVERDIADAENARNEWESKTWDLDSKLGRKFKELEALSMECNQAMKRLKLATEIQYSLN 376
            + +E ++ + E  + E           L  + +ELE+   E  + +++L+   E   +  
Sbjct: 873  EELEDELKELEEEKEE-----------LEEELRELESELAELKEEIEKLRERLEELEAKL 921

Query: 377  SNGSTPSEVMGVDYKSTLKPALESFADDVKRSSVEKLEELISLQQQSSEMAAKIEGKRKR 436
                     +  + +   +  LE+  +       E++E L  +  ++ E     E   +R
Sbjct: 922  ERLEVELPELEEELEEEYEDTLETELEREIERLEEEIEALGPVNLRAIEE---YEEVEER 978

Query: 437  IDALQFHINEMETQLNLLSKETQEITKRCAEEAKKMEEDI 476
             + L+    ++E     L +  +E+ K   E  K+  + I
Sbjct: 979  YEELKSQREDLEEAKEKLLEVIEELDKEKRERFKETFDKI 1018

Length = 1163

>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional

 Score = 47.0 bits (112), Expect = 3e-05
 Identities = 70/362 (19%), Positives = 158/362 (43%), Gaps = 33/362 (9%)

Query: 204 KLEKEKENVSEYVEELKKKVSEMEGAMTGPTEREKLEKEKCVLEEDLNKFNAIIGELNMR 263
           ++EK    + E +  +++++ E+E         E+L+K+   LE+ L +           
Sbjct: 311 EIEKRLSRLEEEINGIEERIKELE---EKEERLEELKKKLKELEKRLEELEERHELYEEA 367

Query: 264 KEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRRELQAVERDI 323
           K K E+L   K+R  G   E+ ++  EE E+ K+ ++ +      +     EL+   +++
Sbjct: 368 KAKKEELERLKKRLTGLTPEKLEKELEELEKAKEEIEEEI---SKITARIGELKKEIKEL 424

Query: 324 ADAENARNEWESK--------TWDLDSKLGRKF-KELEALSMECNQAMKRLKLATEIQYS 374
             A     + + K        T +   +L  ++  EL+ +  E  +  ++ +   +    
Sbjct: 425 KKAIEELKKAKGKCPVCGRELTEEHRKELLEEYTAELKRIEKELKEIEEKERKLRKELRE 484

Query: 375 LNSNGSTPSEVMGVDYKSTLKPALESFADDVKRSSVEKLEELISLQQQSSEMAAKIEGKR 434
           L       SE+  +  K   +  L+   + +K+ ++E+LE+     ++  E   K++G+ 
Sbjct: 485 LEKVLKKESEL--IKLKELAE-QLKELEEKLKKYNLEELEKKAEEYEKLKEKLIKLKGEI 541

Query: 435 KRIDALQFHINEMETQLNLLSKETQEITKRCAEEAKKME-------EDIQTEAHNLDMVE 487
           K +      + E++ +L  L K+  E+ +  AE  K++E       E+++     L+   
Sbjct: 542 KSLKKELEKLEELKKKLAELEKKLDELEEELAELLKELEELGFESVEELEERLKELEPFY 601

Query: 488 REAVEVLKASESKFQ---EAIRQCEEEIQIRALDLFALVDSVSKYKERMESKISKMNKGI 544
            E +E LK +E + +   + +++ EEE+       F  +    K  E +  ++ ++ K  
Sbjct: 602 NEYLE-LKDAEKELEREEKELKKLEEELD----KAFEELAETEKRLEELRKELEELEKKY 656

Query: 545 SE 546
           SE
Sbjct: 657 SE 658

Length = 880

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 45.9 bits (108), Expect = 6e-05
 Identities = 67/313 (21%), Positives = 136/313 (43%), Gaps = 11/313 (3%)

Query: 203  EKLEKEKENVSEYVEELKKKVSEMEGAMTGPTEREKLEKEKCVLEEDLNKFNAIIGELNM 262
            ++ +K+ E   +  +E KK     + A       E  + ++    E+  K +        
Sbjct: 1486 DEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEK 1545

Query: 263  RK-EKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRRELQAV-- 319
            +K ++++K  E K+ E  KK EE K+  E+     ++ +     A+  E  R E      
Sbjct: 1546 KKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEE----AKKAEEARIEEVMKLY 1601

Query: 320  -ERDIADAENARNEWESKTWDLDSKLGRKFKELEALSMECNQAMKRLKLATEIQYSLNSN 378
             E     AE A+   E+K      +L +  +E + +     +  +  K A E++ +   N
Sbjct: 1602 EEEKKMKAEEAKKAEEAKI--KAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEEN 1659

Query: 379  GSTPSEVMGVDYKSTLKPALESFADDVKRSSVEKLEELISLQQQSSEMAAKIEGKRKRID 438
                +E      +   K      A++ ++ + E L++     +++ E+  K   ++K+ +
Sbjct: 1660 KIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAE 1719

Query: 439  ALQFHINEMETQLNLLSKETQEITKRCAEEAKKMEEDIQTEAHNLDMVEREAVEVLKASE 498
             L+    E + +     KE +E  K+ AEEAKK EE+ +  AH     E++A E+ K  E
Sbjct: 1720 ELKKAEEENKIKAEEAKKEAEE-DKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKE 1778

Query: 499  SKFQEAIRQCEEE 511
            +  +E + + +E+
Sbjct: 1779 AVIEEELDEEDEK 1791

Length = 2084

>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional

 Score = 45.1 bits (107), Expect = 1e-04
 Identities = 76/344 (22%), Positives = 151/344 (43%), Gaps = 59/344 (17%)

Query: 202 IEKLEKEKENVSEYVEELKKKVSEMEGAMTGPTEREKLEKEKCVLEEDLNKFNAI----- 256
           I++ EKE E V   + E+  ++ E+        E EKLEKE   LEE   +   +     
Sbjct: 195 IKEKEKELEEVLREINEISSELPELRE------ELEKLEKEVKELEELKEEIEELEKELE 248

Query: 257 -----IGELNMRKEKMEKLVEEKE---REIGKKVEEHKRICEENEEFKK--------RVK 300
                  +L  +  ++E+ +EE +    E+ +KV+E K + E+ EE+ K          +
Sbjct: 249 SLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELKEKAEEYIKLSEFYEEYLDE 308

Query: 301 LQTINARDVERMRRELQAVERDIADAENARNEWESKTWDLDSKLGRKFKELEALSMECNQ 360
           L+ I  R + R+  E+  +E  I + E      E +      +L ++ +ELE       +
Sbjct: 309 LREIEKR-LSRLEEEINGIEERIKELEEKEERLE-ELKKKLKELEKRLEELEERHELYEE 366

Query: 361 AMKRLKLATEIQYSLNSNGSTPSEVMGVDYKSTLKPALESFADDVKRSSVEKLEELISLQ 420
           A  + +    ++  L   G TP +             LE   ++++++  E  EE+  + 
Sbjct: 367 AKAKKEELERLKKRL--TGLTPEK-------------LEKELEELEKAKEEIEEEISKIT 411

Query: 421 QQSSEMAAKIEGKRKRIDALQ----------FHINEMETQLNLLSKETQEITKRCAE--E 468
            +  E+  +I+  +K I+ L+            + E E +  LL + T E+ +   E  E
Sbjct: 412 ARIGELKKEIKELKKAIEELKKAKGKCPVCGRELTE-EHRKELLEEYTAELKRIEKELKE 470

Query: 469 AKKMEEDIQTEAHNLDMVEREAVEVLKASESKFQEAIRQCEEEI 512
            ++ E  ++ E   L+ V ++  E++K    +  E +++ EE++
Sbjct: 471 IEEKERKLRKELRELEKVLKKESELIK--LKELAEQLKELEEKL 512

Length = 880

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 44.7 bits (105), Expect = 1e-04
 Identities = 73/325 (22%), Positives = 140/325 (43%), Gaps = 14/325 (4%)

Query: 207  KEKENVSEYVEELKKKVSEM----EGAMTGPTEREKLEKEKCVLEEDLNKFNAIIGELNM 262
            K+K   ++  +E KKK  E     E        ++K ++ K   E       A   E   
Sbjct: 1463 KKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAK 1522

Query: 263  RKEKMEKLVEEKEREIGKKVEEHKRICE--ENEEFKKRVKLQTINARDVERMRRELQAVE 320
            + ++ +K  E K+ +  KK EE K+  E  + EE KK  + +           + +   +
Sbjct: 1523 KADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRK 1582

Query: 321  RDIA-DAENARNEWESKTWDLDSKL----GRKFKELEALSMECNQAMKRLKLATEIQYSL 375
             + A  AE AR E   K ++ + K+     +K +E +  + E  +A +  K   +++   
Sbjct: 1583 AEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKE 1642

Query: 376  NSNGSTPSEVMGVDYKSTLKPALESFADDVKRSSVEKLEELISLQQQSSEMAAKIEGKRK 435
                    E+   + ++ +K A E+   +  +   E+ ++    +++++E   K   + K
Sbjct: 1643 AEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAK 1702

Query: 436  RIDALQFHINEMETQLNLLSKETQEITKRCAEEAKKMEEDIQTEAHNL--DMVEREAVEV 493
            + + L+    E + +   L K  +E  K  AEEAKK  E+ + +A     D  E++ +  
Sbjct: 1703 KAEELKKKEAEEKKKAEELKKA-EEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAH 1761

Query: 494  LKASESKFQEAIRQCEEEIQIRALD 518
            LK  E K  E IR+ +E +    LD
Sbjct: 1762 LKKEEEKKAEEIRKEKEAVIEEELD 1786

Length = 2084

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 44.3 bits (105), Expect = 2e-04
 Identities = 34/168 (20%), Positives = 68/168 (40%), Gaps = 25/168 (14%)

Query: 195 DNIDKGFIEKLEKEKENVSEYVEELKKKVSEMEGAMTGPT-EREKLEKEKCVLEEDL--- 250
             +    I +++ E   + E V  ++ ++ E+E  +   T E+E LEKE   L+E     
Sbjct: 786 ARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDL 845

Query: 251 ----NKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINA 306
                     I  LN +KE++E+ +EE E  +         +                  
Sbjct: 846 KEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDL-----------------K 888

Query: 307 RDVERMRRELQAVERDIADAENARNEWESKTWDLDSKLGRKFKELEAL 354
           ++ + +  +L+ +ER I + E    +   +  +L +KL    +EL  +
Sbjct: 889 KERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEI 936

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|116500 pfam07888, CALCOCO1, Calcium binding and coiled-coil domain (CALCOCO1) like

 Score = 43.8 bits (103), Expect = 2e-04
 Identities = 57/304 (18%), Positives = 122/304 (40%), Gaps = 28/304 (9%)

Query: 205 LEKEKENVSEYVEELKKKVSEMEGAMTGPTEREKLEKEKC--------VLEEDLNKFNAI 256
           L K+   +   V +++ ++ ++E A+   TE+ +  +E+          +  + N   A 
Sbjct: 155 LMKKFLALEGDVSDMRSRIEQLETALRHSTEKTEELEEQHKEAQSSSESMSAERNALLAQ 214

Query: 257 IGELNMRKEKME-------KLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDV 309
             E   R  ++E       +  +E +R +    +    +     E K+R+K  TI  RD 
Sbjct: 215 RAENQQRILELEQDIQTLTQKKQENDRVLEGTQDIEAELERMKGELKQRLKKMTIQRRDE 274

Query: 310 ERMRRELQAVERDIADAENARNEWESKTWDLDSKLGRKFKELEALSMECNQAMKRLKLAT 369
           E  R +LQ     + +      E    +      LG +   L +L       + + +L +
Sbjct: 275 ETERIDLQLENEQLHEDLRTLQERLESSQQKAGLLGEELASLGSLRDHTIAELHQSRLES 334

Query: 370 -EIQYSLNSNGSTPSEVMGV--DYKSTLKPALESFADDVKRSSVEKLEELISLQQQSS-- 424
            ++   L+       E        + TL+ + E+  D +++ S E L+    LQ++ S  
Sbjct: 335 AQMSLQLSQLNLALKEGQSQWAQERETLRQSAEADKDRIQKLSAELLKLEEWLQEERSQR 394

Query: 425 -----EMAAKIEGKRKRIDALQFHINEMETQLNLLSKET---QEITKRCAEEAKKMEEDI 476
                E+  + +  R ++   +  ++E+ + L +L KE    QE  +   +  + +E  +
Sbjct: 395 EKLEVELGIEKDCNRVQLSENRRELSELRSALRVLQKEKEQLQEEKQELLDYIRVLELRL 454

Query: 477 QTEA 480
             EA
Sbjct: 455 DKEA 458

Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region. Length = 546

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 44.0 bits (104), Expect = 2e-04
 Identities = 75/374 (20%), Positives = 170/374 (45%), Gaps = 32/374 (8%)

Query: 201 FIEKLEKEKENVSEYVEELKKKVSEMEGAMTGPTER-EKLEKEKCVLEEDLNKFNAIIGE 259
             E+  +  + + E ++EL++++ E+E  +    ER ++LE+    L+E+L + +A + E
Sbjct: 348 LAEEKNELAKLLEERLKELEERLEELEKELEKALERLKQLEEAIQELKEELAELSAALEE 407

Query: 260 LNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMR------ 313
           +    E++EK +EE ERE+ +  EE K++ E+  + + +  +    A   E+        
Sbjct: 408 IQEELEELEKELEELERELEELEEEIKKLEEQINQLESKELMIAELAGAGEKCPVCGQEL 467

Query: 314 --------RELQAVERDIADAENARNEWESKTWDLDSKLGRKFKELEALSMECNQAMKRL 365
                    EL  +E +  + E +R + E++  +   +L ++ +ELE   +E  +  + L
Sbjct: 468 PEEHEKELLELYELELEELEEELSREKEEAELREEIEELEKELRELEEELIELLELEEAL 527

Query: 366 KLATEIQYSLNSNGSTPSEVMGVDYKSTLKPALESFADDVKRSSVEKLEELISLQQQSSE 425
           K   E +           E +    +      L+          +++L+EL+   +    
Sbjct: 528 KEELEEK---LEKLENLLEELEELKEKLQLQQLKEELRQ-LEDRLQELKELLEELRLLRT 583

Query: 426 MAAKIEGKRKRIDALQFHINEMETQLNLLSKETQEITKRCAE-EAKKMEEDIQTE----- 479
              ++E  R+R+  L+  + E+E +L+ L +  Q +    AE E ++ EE++++E     
Sbjct: 584 RKEELEELRERLKELKKKLKELEERLSQLEELLQSLELSEAENELEEAEEELESELEKLN 643

Query: 480 -AHNLDMVEREAVEVLKASESKFQEAIRQCEEEIQIRA------LDLFALVDSVSKYKER 532
               L+ + + A+E L+    + +  IR+  + I+          +L  L + + + +E 
Sbjct: 644 LQAELEELLQAALEELEEKVEELEAEIRRELQRIENEEQLEEKLEELEQLEEELEQLREE 703

Query: 533 MESKISKMNKGISE 546
           +E  + K+ +    
Sbjct: 704 LEELLKKLGEIEQL 717

Length = 908

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 43.2 bits (102), Expect = 4e-04
 Identities = 50/265 (18%), Positives = 116/265 (43%), Gaps = 25/265 (9%)

Query: 199 KGFIEKLEKEKENVSEYVEELKKKVSEMEGAMTGPT-EREKLEKEKCVLEEDLNKFNAII 257
           +  +E+ EKE E +   +EEL++++ E++  +     E E+LE E  +L E L +    +
Sbjct: 259 QEELEEAEKEIEELKSELEELREELEELQEELLELKEEIEELEGEISLLRERLEELENEL 318

Query: 258 GELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVK-LQTINARDVERMRREL 316
            EL  R E++++ +E  + E+ ++    + + +   E ++  + L+   +  +E +    
Sbjct: 319 EELEERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLSALLEELEELF 378

Query: 317 QAVERDIADAENARNEWESKTWDLDSKLGRKFKELEALSMECNQAMKRLKLATEIQYSLN 376
           +A+  ++A+ E    E  ++  +L  ++    + LE LS       + LK          
Sbjct: 379 EALREELAELEAELAEIRNELEELKREIESLEERLERLSERLEDLKEELKELEA------ 432

Query: 377 SNGSTPSEVMGVDYKSTLKPALESFADDVKRSSVEKLEELISLQQQSSEMAAKIEGKRKR 436
                            L+  LE    ++     E  E+L  L+ +  E+  ++   ++ 
Sbjct: 433 -------------ELEELQTELE----ELNEELEELEEQLEELRDRLKELERELAELQEE 475

Query: 437 IDALQFHINEMETQLNLLSKETQEI 461
           +  L+  ++ +E +L+ L  E +  
Sbjct: 476 LQRLEKELSSLEARLDRLEAEQRAS 500

Length = 1163

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 42.7 bits (101), Expect = 5e-04
 Identities = 68/347 (19%), Positives = 139/347 (40%), Gaps = 57/347 (16%)

Query: 225 EMEGAMTG------------PTEREKLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVE 272
           E  GAMTG             +E  +L++ +  LE    + +++  EL   + ++++L +
Sbjct: 650 EKSGAMTGGSRAPRGGILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQ 709

Query: 273 EKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRRELQAVER-------DIAD 325
           E      K  E  K I +  +E +K  +       D+  + +E++ V+         I +
Sbjct: 710 ELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEE 769

Query: 326 AENARNEWESKTWDLDSKLGR-KFKELEALSMECNQAMKRLKLAT-EIQYSLNSNGSTPS 383
            E   ++ E    DL+++L   +  E++A   +  + + R++    EI+  LN       
Sbjct: 770 LEEDLHKLEEALNDLEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNR------ 823

Query: 384 EVMGVDYKSTLKPALESFADDVKRSSVEKLEELISLQQQSSEMAAKIEGKRKRIDALQFH 443
                   +  K  LE           E  E+ I L++Q   +  +IE    + + L+  
Sbjct: 824 -------LTLEKEYLEK-------EIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEE 869

Query: 444 INEMETQLNLLSKETQEITKRCAEEAKKMEE----------DIQTEAHNLDMVEREAVEV 493
           + E+E  L  L     ++ K   E   ++ E           I+ +   L  ++   +E 
Sbjct: 870 LEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELK-AKLEA 928

Query: 494 LKASESKFQEAIRQCEEEIQIRALDLFALVDSVSKYKERMESKISKM 540
           L+   S+ ++   + +EEI    L L    + V    +R+E +I  +
Sbjct: 929 LEEELSEIEDPKGE-DEEIPEEELSL----EDVQAELQRVEEEIRAL 970

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional

 Score = 42.7 bits (101), Expect = 5e-04
 Identities = 67/287 (23%), Positives = 133/287 (46%), Gaps = 45/287 (15%)

Query: 202 IEKLEKEKENVSEYVEELKKKVSEMEGAMTGPTEREKLEK---EKCVLEEDLNKFNAIIG 258
           ++++EKE + + E   +L+K++ E+E  +   +E  KL++   +   LEE L K+N  + 
Sbjct: 461 LKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKLKELAEQLKELEEKLKKYN--LE 518

Query: 259 ELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRREL-- 316
           EL  + E+ EKL +EK  ++  +++  K+  E+ EE KK++        ++E    EL  
Sbjct: 519 ELEKKAEEYEKL-KEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKLDELEEELAELLK 577

Query: 317 ----------QAVERDIADAENARNEWESKTWDLDSKLGRKFKELEALSMECNQAMKRLK 366
                     + +E  + + E   NE+     D + +L R+ KEL+ L  E ++A + L 
Sbjct: 578 ELEELGFESVEELEERLKELEPFYNEYLELK-DAEKELEREEKELKKLEEELDKAFEELA 636

Query: 367 LATEIQYSLNSNGSTPSEVMGVDYKSTLKPALESFADDVKRSSVEKLEELISLQQQSSEM 426
              +    L               +  L+   + ++++      E+  EL      S E+
Sbjct: 637 ETEKRLEEL---------------RKELEELEKKYSEEEYEELREEYLEL------SREL 675

Query: 427 AAKIEGKRKRIDALQFHINEMETQLNLLSKETQEITKRCAEEAKKME 473
           A    G R  ++ L+    E++  L  L +E +E  ++  +E +K+E
Sbjct: 676 A----GLRAELEELEKRREEIKKTLEKLKEELEER-EKAKKELEKLE 717

Length = 880

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 42.8 bits (100), Expect = 5e-04
 Identities = 69/320 (21%), Positives = 139/320 (43%), Gaps = 28/320 (8%)

Query: 203  EKLEKEKENVSEYVEELKKKVSEMEGAMTGPTEREKLEKEKCVLEEDLNKFNAIIGELNM 262
            ++ +K+ E   +  +  KKK  E + A     E  K E E    E +  +  A   E   
Sbjct: 1318 DEAKKKAEEAKKKADAAKKKAEEAKKA----AEAAKAEAEAAADEAEAAEEKAEAAEKKK 1373

Query: 263  RKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRRELQAVERD 322
             + K +    +K+ E  KK +E K+  EE+++    +K      +  +  +++ +  ++ 
Sbjct: 1374 EEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKK- 1432

Query: 323  IADAENARNEWESKTWDLDSKLGRKFKELEALSMECNQAMKRLKLATEIQYSLNSNGSTP 382
               A+ A+ + E           +K  E +  + E  +A +  K A E + +  +     
Sbjct: 1433 ---ADEAKKKAEEA---------KKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAE 1480

Query: 383  SEVMGVDYKSTLKPALESFADDVKRSSVEK--LEELISLQQ-QSSEMAAKIEGKRKRIDA 439
                  + K   + A +  AD+ K+++  K   +E    ++ + ++ A K E  +K  +A
Sbjct: 1481 EAKKADEAKKKAEEAKKK-ADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEA 1539

Query: 440  LQFHINEMETQLNLLSKETQEITKRCAEEAKKMEEDIQTEAHNLDMVEREAVEVLKASES 499
             +    +   +L    +  +   K+ AEEAKK EED        +M  R+A E  KA E+
Sbjct: 1540 KKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEED-------KNMALRKAEEAKKAEEA 1592

Query: 500  KFQEAIRQCEEEIQIRALDL 519
            + +E ++  EEE +++A + 
Sbjct: 1593 RIEEVMKLYEEEKKMKAEEA 1612

Length = 2084

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 42.4 bits (100), Expect = 7e-04
 Identities = 60/284 (21%), Positives = 125/284 (44%), Gaps = 26/284 (9%)

Query: 201  FIEKLEKEKENVSEYVEELKKKVSEMEG-------------AMTGPTEREKLEKEKCVLE 247
             +  LE+E ENV   ++EL+ ++ E+E              A    +   +++ E   LE
Sbjct: 745  DLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSRIPEIQAELSKLE 804

Query: 248  EDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINAR 307
            E++++  A + E+  +  ++    E  E+EI +  E+   + E+ +  +K ++       
Sbjct: 805  EEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKE 864

Query: 308  DVERMRRELQAVERDIADAENARNEWESKTWDLDSKLGRKFKELEALSMECNQAMKRLKL 367
            ++E    EL+A  RD+   E+   + + +  +L+++L    +++E L  +  +  KRL  
Sbjct: 865  ELEEELEELEAALRDL---ESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSE 921

Query: 368  ATEIQYSLNSNGSTPSEVMGVDYKSTLKPALESFADDVKRSSVEKLEELISLQQQSSEMA 427
                  +L    S   +  G D +    P  E   +DV+       EE+ +L  +   M 
Sbjct: 922  LKAKLEALEEELSEIEDPKGEDEEI---PEEELSLEDVQAELQRVEEEIRAL--EPVNML 976

Query: 428  AKIEGKRKRIDALQFHINEMETQLNLLSKETQEITKRCAEEAKK 471
            A  E +      +   ++E++ +   L +E + I +R  E  KK
Sbjct: 977  AIQEYEE-----VLKRLDELKEKRAKLEEERKAILERIEEYEKK 1015

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 42.4 bits (99), Expect = 7e-04
 Identities = 70/316 (22%), Positives = 126/316 (39%), Gaps = 15/316 (4%)

Query: 206  EKEKENVSEYVEELKKKVSEMEGAMTGPTEREKLEKEKCVLEEDLNKFNAIIGELNMRK- 264
             KE     E  EE   K  E +   TG  E  +  +E     ED  K        + RK 
Sbjct: 1083 AKEDNRADEATEEAFGKAEEAKKTETGKAEEARKAEEAKKKAEDARKAEEARKAEDARKA 1142

Query: 265  EKMEKLVEEKEREIGKKVEEHKRICEE---NEEFKKRVKLQTINARDVERMRRELQAVER 321
            E+  K  + K  EI +K E+ ++  E     +  K     +    R  E +R+   A + 
Sbjct: 1143 EEARKAEDAKRVEIARKAEDARKAEEARKAEDAKKAEAARKAEEVRKAEELRKAEDARKA 1202

Query: 322  DIA-DAENARNEWESKTWDLDSKLGRKFKELEALSMECNQAMKRLKLATEIQYSLNSNGS 380
            + A  AE  R   E++  + D+K     K+ E    +  +A K    A E + +      
Sbjct: 1203 EAARKAEEERKAEEARKAE-DAKKAEAVKKAEEAKKDAEEAKK----AEEERNNEEIRKF 1257

Query: 381  TPSEVMGVDYKSTLKPALESF-ADDVKRS-SVEKLEEL-ISLQQQSSEMAAKIEGKRKRI 437
              + +     +     A E+  AD++K++   +K +E   + +++ ++ A K   + K+ 
Sbjct: 1258 EEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKA 1317

Query: 438  DALQFHINEMETQLNLLSKETQEITKRCAEEAKKMEEDIQTEAHNLDMVEREAVEVLKAS 497
            D  +    E + + +   K+ +E  K  A EA K E +   +       + EA E  K  
Sbjct: 1318 DEAKKKAEEAKKKADAAKKKAEEAKK--AAEAAKAEAEAAADEAEAAEEKAEAAEKKKEE 1375

Query: 498  ESKFQEAIRQCEEEIQ 513
              K  +A ++  EE +
Sbjct: 1376 AKKKADAAKKKAEEKK 1391

Length = 2084

>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional

 Score = 41.9 bits (99), Expect = 9e-04
 Identities = 69/361 (19%), Positives = 137/361 (37%), Gaps = 44/361 (12%)

Query: 202 IEKLEKEKENVSEYVEELKKKVSEMEGAMTG---------------PTEREKLEKEKCVL 246
           I + E+E+E ++E V +L++++ E+E                       RE+LE     L
Sbjct: 267 IAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEEL 326

Query: 247 EEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINA 306
            + L +        N   E + +  ++ E    +  EE   +  E EE ++ V+ +    
Sbjct: 327 RDRLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELESELEEAREAVEDR---R 383

Query: 307 RDVERMRRELQAVERDIADAENARNEWESKTWDLDSKLGRKFKELEALSMECNQAMKRLK 366
            ++E +  E++ +     DA       E    +L  +     +    L      A +R++
Sbjct: 384 EEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAELEATLRTARERVE 443

Query: 367 LATEIQYSLNSNGSTP---------SEVMGVDYKSTLKPALESFADDVKRSSVEKLEELI 417
            A      L   G  P           V  ++        LE+  +D+    VE++EE +
Sbjct: 444 EAEA----LLEAGKCPECGQPVEGSPHVETIEEDRERVEELEAELEDL-EEEVEEVEERL 498

Query: 418 SLQQQSSEMAAKIEGKRKRIDALQFHINEMETQLNLLSKETQEITKRCAE---EAKKMEE 474
              +   E   +IE   +R + L+  I E    +    +  +E+ +R AE   EA++  E
Sbjct: 499 ERAEDLVEAEDRIERLEERREDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKRE 558

Query: 475 DIQTEAHNLDMVEREAVEVLKASESKFQEAIRQCEEEIQIRALDLFALVDSVSKYKERME 534
                    +    EA E +    SK  E     +E I+     +  L+ +++  ++ +E
Sbjct: 559 AAAEAEEEAE----EAREEVAELNSKLAE----LKERIE-SLERIRTLLAAIADAEDEIE 609

Query: 535 S 535
            
Sbjct: 610 R 610

Length = 880

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 41.3 bits (97), Expect = 0.001
 Identities = 66/375 (17%), Positives = 155/375 (41%), Gaps = 25/375 (6%)

Query: 187 IEGKDGDVDNIDKGFIEKLEKEKENVSEYVEELKKKVSEMEGAMTGPTEREKLEKEKCVL 246
           +E  + ++  + K    + E+E+E + + +E L+++++E+E       E+E+LE+ K  L
Sbjct: 205 LEALEEELKELKKLEEIQEEQEEEELEQEIEALEERLAELE------EEKERLEELKARL 258

Query: 247 EEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINA 306
            E  +     +        ++E+L+EE E +I +  E  + I E  EE +    L     
Sbjct: 259 LEIESLELEALKIREEELRELERLLEELEEKIERLEELEREIEELEEELEGLRALLEELE 318

Query: 307 RDVERMRRELQAVERDIADAENARNEWESKTWDLDSKLGRKFKELEALSMECNQAMKRL- 365
             +E+++   + +E+     E   +E E    + +       + L+ L     +  K L 
Sbjct: 319 ELLEKLKSLEERLEKLEEKLEKLESELEELAEEKNELAKLLEERLKELEERLEELEKELE 378

Query: 366 -------KLATEIQYSLNSNGSTPSEVMGVDY---KSTLKPALESFADDVKRSSVEKLEE 415
                  +L   IQ          + +  +     +   +        +     ++KLEE
Sbjct: 379 KALERLKQLEEAIQELKEELAELSAALEEIQEELEELEKELEELERELEELEEEIKKLEE 438

Query: 416 LISLQQQSSEMAAKIEGKRKRID-ALQFHINEMETQL-NLLSKETQEITKR-----CAEE 468
            I+  +    M A++ G  ++     Q    E E +L  L   E +E+ +         E
Sbjct: 439 QINQLESKELMIAELAGAGEKCPVCGQELPEEHEKELLELYELELEELEEELSREKEEAE 498

Query: 469 AKKMEEDIQTEAHNLDMVEREAVEVLKASESKFQEAIRQCEEEI-QIRALDLFALVDSVS 527
            ++  E+++ E   L+    E +E+ +A + + +E + + E  + ++  L     +  + 
Sbjct: 499 LREEIEELEKELRELEEELIELLELEEALKEELEEKLEKLENLLEELEELKEKLQLQQLK 558

Query: 528 KYKERMESKISKMNK 542
           +   ++E ++ ++ +
Sbjct: 559 EELRQLEDRLQELKE 573

Length = 908

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 41.3 bits (96), Expect = 0.002
 Identities = 68/317 (21%), Positives = 122/317 (38%), Gaps = 12/317 (3%)

Query: 203  EKLEKEKENVSEYVEELKKKVSEMEGAMTGPTEREKLEKEKCVLEEDLNKFNAIIGELNM 262
            +K E+E+ N      E  +             E  +   E    EE      A   E   
Sbjct: 1243 KKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKK 1302

Query: 263  RKEKMEKLVEEKER--EIGKKVEEHKRICEE-NEEFKKRVKLQTINARDVERMRRELQAV 319
            + ++ +K  EE ++  E  KK EE K+  +   ++ ++  K       + E    E +A 
Sbjct: 1303 KADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAA 1362

Query: 320  ERDIADAENARNEWESKTWDLDSKLG--RKFKELEALSMECNQAMKRLKLATEIQYSLNS 377
            E     AE  + E + K      K    +K  E +  + E  +    LK A   +   + 
Sbjct: 1363 EEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADE 1422

Query: 378  NGSTPSEVMGVDYKSTLKPALESFADDVKRSSVE--KLEELI--SLQQQSSEMAAKIEGK 433
                  E    D ++  K      AD+ K+ + E  K EE    + + + ++ A K   +
Sbjct: 1423 AKKKAEEKKKAD-EAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEE 1481

Query: 434  RKRIDALQFHINEMETQLNLLSKETQEITKRCAEEAKKMEEDIQTEAHNLDMVEREAVEV 493
             K+ D  +    E + + +   K  +   K+ A+EAKK EE  + +        ++A E 
Sbjct: 1482 AKKADEAKKKAEEAKKKADEAKKAAEA--KKKADEAKKAEEAKKADEAKKAEEAKKADEA 1539

Query: 494  LKASESKFQEAIRQCEE 510
             KA E K  + +++ EE
Sbjct: 1540 KKAEEKKKADELKKAEE 1556

Length = 2084

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 40.1 bits (94), Expect = 0.003
 Identities = 44/236 (18%), Positives = 94/236 (39%), Gaps = 36/236 (15%)

Query: 307 RDVERMRRELQAVERDIADAENARNEWESKTWDLDSKLGRKFKELEALSMECNQAMKRLK 366
           R  E+   EL+ VE +I                LD  +  K ++LE L  E  +A +   
Sbjct: 170 RKKEKALEELEEVEENIER--------------LDLIIDEKRQQLERLRREREKAERYQA 215

Query: 367 LATEIQYSLNSNGSTPSEVMGVDYKSTLKPALESFADDVKRSSVEKLEELISLQQQSSEM 426
           L  E +                +Y+       E  A + ++ ++E+  +L SL+++  ++
Sbjct: 216 LLKEKR----------------EYEGYEL-LKEKEALERQKEAIER--QLASLEEELEKL 256

Query: 427 AAKIEGKRKRIDALQFHINEMETQLNLLSKETQ-EITKRCAEEAKKMEEDIQTEAHNLDM 485
             +I    KR++ ++  + E+  ++  L +E Q  + ++  E   ++    ++ A     
Sbjct: 257 TEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKERE 316

Query: 486 VEREAVEVLKASE--SKFQEAIRQCEEEIQIRALDLFALVDSVSKYKERMESKISK 539
           +E     + K      K    I + E EI+        L +  ++ KE +E   ++
Sbjct: 317 LEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAE 372

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|217933 pfam04156, IncA, IncA protein

 Score = 39.0 bits (91), Expect = 0.003
 Identities = 29/103 (28%), Positives = 54/103 (52%), Gaps = 1/103 (0%)

Query: 411 EKLEELISLQQQSSEMAAKIEGKRKRIDALQFHINEMETQLNLLSKETQEITKRCAEEAK 470
           E   EL  L+QQ SE+  ++E   +RI  L+  + +++  L LL +  + + +R  E  +
Sbjct: 76  ELQGELSELKQQLSELQEELEDLEERIAELESELEDLKEDLQLLRELLKSLEERL-ESLE 134

Query: 471 KMEEDIQTEAHNLDMVEREAVEVLKASESKFQEAIRQCEEEIQ 513
           +  +++  E   L    RE VE L+    + QE +++ +E IQ
Sbjct: 135 ESIKELAKELRELRQDLREEVEELREELERLQENLQRLQEAIQ 177

Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is non-fusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA, is functionally associated with the homotypic fusion of inclusions. This family probably includes members of the wider Inc family rather than just IncA. Length = 186

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	576
KOG0995	581	consensus Centromere-associated protein HEC1 [Cell	100.0
COG5185	622	HEC1 Protein involved in chromosome segregation, i	100.0
PF03801	157	Ndc80_HEC: HEC/Ndc80p family; InterPro: IPR005550	100.0
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	99.61
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	99.53
KOG0161	1930	consensus Myosin class II heavy chain [Cytoskeleto	99.37
KOG0996	1293	consensus Structural maintenance of chromosome pro	99.15
KOG0933	1174	consensus Structural maintenance of chromosome pro	99.05
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	99.01
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	98.96
PF01576	859	Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu	98.77
KOG0995	581	consensus Centromere-associated protein HEC1 [Cell	98.75
PF00038	312	Filament: Intermediate filament protein; InterPro:	98.7
KOG0971	1243	consensus Microtubule-associated protein dynactin	98.65
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	98.62
KOG0161	1930	consensus Myosin class II heavy chain [Cytoskeleto	98.61
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	98.57
PRK02224	880	chromosome segregation protein; Provisional	98.57
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	98.55
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	98.55
PF09730	717	BicD: Microtubule-associated protein Bicaudal-D; I	98.5
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	98.48
KOG0977	546	consensus Nuclear envelope protein lamin, intermed	98.47
PRK02224	880	chromosome segregation protein; Provisional	98.47
PRK04778	569	septation ring formation regulator EzrA; Provision	98.46
KOG4674	1822	consensus Uncharacterized conserved coiled-coil pr	98.44
KOG0964	1200	consensus Structural maintenance of chromosome pro	98.42
PF12128	1201	DUF3584: Protein of unknown function (DUF3584); In	98.41
KOG0018	1141	consensus Structural maintenance of chromosome pro	98.32
PRK03918	880	chromosome segregation protein; Provisional	98.29
PRK11637	428	AmiB activator; Provisional	98.15
PF10174	775	Cast: RIM-binding protein of the cytomatrix active	98.12
PRK03918	880	chromosome segregation protein; Provisional	98.11
KOG0250	1074	consensus DNA repair protein RAD18 (SMC family pro	98.11
KOG0964	1200	consensus Structural maintenance of chromosome pro	98.07
PHA02562	562	46 endonuclease subunit; Provisional	98.05
PF00038	312	Filament: Intermediate filament protein; InterPro:	98.0
PRK04863	1486	mukB cell division protein MukB; Provisional	97.95
KOG1029	1118	consensus Endocytic adaptor protein intersectin [S	97.94
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	97.93
KOG0933	1174	consensus Structural maintenance of chromosome pro	97.89
TIGR03185	650	DNA_S_dndD DNA sulfur modification protein DndD. T	97.89
KOG0971	1243	consensus Microtubule-associated protein dynactin	97.86
KOG0250	1074	consensus DNA repair protein RAD18 (SMC family pro	97.69
KOG4674	1822	consensus Uncharacterized conserved coiled-coil pr	97.68
KOG0977	546	consensus Nuclear envelope protein lamin, intermed	97.68
PRK11637	428	AmiB activator; Provisional	97.61
PF00261	237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	97.57
KOG0976	1265	consensus Rho/Rac1-interacting serine/threonine ki	97.54
KOG0612	1317	consensus Rho-associated, coiled-coil containing p	97.51
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	97.48
PRK01156	895	chromosome segregation protein; Provisional	97.41
PF10234	267	Cluap1: Clusterin-associated protein-1; InterPro:	97.34
KOG4643	1195	consensus Uncharacterized coiled-coil protein [Fun	97.3
PF10174	775	Cast: RIM-binding protein of the cytomatrix active	97.28
PRK09039	343	hypothetical protein; Validated	97.24
PF10498	359	IFT57: Intra-flagellar transport protein 57 ; Inte	97.22
PRK04778	569	septation ring formation regulator EzrA; Provision	97.22
COG5185	622	HEC1 Protein involved in chromosome segregation, i	97.21
PF12128	1201	DUF3584: Protein of unknown function (DUF3584); In	97.15
COG1579	239	Zn-ribbon protein, possibly nucleic acid-binding [	97.11
PHA02562	562	46 endonuclease subunit; Provisional	97.07
KOG4673	961	consensus Transcription factor TMF, TATA element m	97.04
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	96.98
KOG0976	1265	consensus Rho/Rac1-interacting serine/threonine ki	96.98
PF05667	594	DUF812: Protein of unknown function (DUF812); Inte	96.93
PF09730	717	BicD: Microtubule-associated protein Bicaudal-D; I	96.9
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	96.9
KOG0018	1141	consensus Structural maintenance of chromosome pro	96.89
TIGR03185	650	DNA_S_dndD DNA sulfur modification protein DndD. T	96.87
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	96.87
KOG0994	1758	consensus Extracellular matrix glycoprotein Lamini	96.83
PF09755	310	DUF2046: Uncharacterized conserved protein H4 (DUF	96.8
KOG0980	980	consensus Actin-binding protein SLA2/Huntingtin-in	96.77
COG1340	294	Uncharacterized archaeal coiled-coil protein [Func	96.76
PF15070	617	GOLGA2L5: Putative golgin subfamily A member 2-lik	96.72
PF01576	859	Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu	96.66
smart00787	312	Spc7 Spc7 kinetochore protein. This domain is foun	96.61
PF06160	560	EzrA: Septation ring formation regulator, EzrA ; I	96.61
COG1579	239	Zn-ribbon protein, possibly nucleic acid-binding [	96.58
PF06160	560	EzrA: Septation ring formation regulator, EzrA ; I	96.58
PRK09039	343	hypothetical protein; Validated	96.56
KOG4673	961	consensus Transcription factor TMF, TATA element m	96.54
smart00787	312	Spc7 Spc7 kinetochore protein. This domain is foun	96.51
COG4942	420	Membrane-bound metallopeptidase [Cell division and	96.5
KOG1029	1118	consensus Endocytic adaptor protein intersectin [S	96.48
PF13851	201	GAS: Growth-arrest specific micro-tubule binding	96.43
KOG0963	629	consensus Transcription factor/CCAAT displacement	96.37
KOG4643	1195	consensus Uncharacterized coiled-coil protein [Fun	96.29
PF05667	594	DUF812: Protein of unknown function (DUF812); Inte	96.28
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	96.27
PF03148	384	Tektin: Tektin family; InterPro: IPR000435 Tektin	96.19
PF12718	143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	96.14
PRK04863	1486	mukB cell division protein MukB; Provisional	96.12
PF14662	193	CCDC155: Coiled-coil region of CCDC155	96.11
KOG0963	629	consensus Transcription factor/CCAAT displacement	96.08
PF12718	143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	96.07
KOG0996	1293	consensus Structural maintenance of chromosome pro	95.9
KOG0962	1294	consensus DNA repair protein RAD50, ABC-type ATPas	95.77
KOG0979	1072	consensus Structural maintenance of chromosome pro	95.73
KOG0994	1758	consensus Extracellular matrix glycoprotein Lamini	95.7
TIGR02680	1353	conserved hypothetical protein TIGR02680. Members	95.66
KOG0979	1072	consensus Structural maintenance of chromosome pro	95.49
KOG0980	980	consensus Actin-binding protein SLA2/Huntingtin-in	95.43
PF14662	193	CCDC155: Coiled-coil region of CCDC155	95.43
COG0419	908	SbcC ATPase involved in DNA repair [DNA replicatio	95.43
PF15254	861	CCDC14: Coiled-coil domain-containing protein 14	95.42
KOG0999	772	consensus Microtubule-associated protein Bicaudal-	95.37
PF15070	617	GOLGA2L5: Putative golgin subfamily A member 2-lik	95.21
PF12325	120	TMF_TATA_bd: TATA element modulatory factor 1 TATA	95.15
PF05483	786	SCP-1: Synaptonemal complex protein 1 (SCP-1); Int	95.13
PF15066	527	CAGE1: Cancer-associated gene protein 1 family	95.04
PRK11281	1113	hypothetical protein; Provisional	94.95
PF10234	267	Cluap1: Clusterin-associated protein-1; InterPro:	94.94
PF05622	713	HOOK: HOOK protein; InterPro: IPR008636 This famil	94.9
COG4477	570	EzrA Negative regulator of septation ring formatio	94.9
COG1340	294	Uncharacterized archaeal coiled-coil protein [Func	94.89
KOG0243	1041	consensus Kinesin-like protein [Cytoskeleton]	94.83
PF05557	722	MAD: Mitotic checkpoint protein; InterPro: IPR0086	94.82
TIGR01843	423	type_I_hlyD type I secretion membrane fusion prote	94.74
PF09787	511	Golgin_A5: Golgin subfamily A member 5; InterPro:	94.71
KOG0243	1041	consensus Kinesin-like protein [Cytoskeleton]	94.56
PF05701	522	WEMBL: Weak chloroplast movement under blue light;	94.54
PF05701	522	WEMBL: Weak chloroplast movement under blue light;	94.34
PF13851	201	GAS: Growth-arrest specific micro-tubule binding	94.33
PF09755	310	DUF2046: Uncharacterized conserved protein H4 (DUF	94.22
PF04849	306	HAP1_N: HAP1 N-terminal conserved region; InterPro	94.19
PF10473	140	CENP-F_leu_zip: Leucine-rich repeats of kinetochor	94.09
TIGR00634	563	recN DNA repair protein RecN. All proteins in this	94.07
PF12252	1439	SidE: Dot/Icm substrate protein; InterPro: IPR0210	93.84
PF15397	258	DUF4618: Domain of unknown function (DUF4618)	93.8
PF08614	194	ATG16: Autophagy protein 16 (ATG16); InterPro: IPR	93.76
PF04111	314	APG6: Autophagy protein Apg6; InterPro: IPR007243	93.7
KOG1962	216	consensus B-cell receptor-associated protein and r	93.65
TIGR02680	1353	conserved hypothetical protein TIGR02680. Members	93.29
PF10146	230	zf-C4H2: Zinc finger-containing protein ; InterPro	93.25
TIGR03007	498	pepcterm_ChnLen polysaccharide chain length determ	93.21
KOG1853	333	consensus LIS1-interacting protein NUDE [Cytoskele	93.2
COG3883	265	Uncharacterized protein conserved in bacteria [Fun	93.18
COG3883	265	Uncharacterized protein conserved in bacteria [Fun	93.08
PF05622	713	HOOK: HOOK protein; InterPro: IPR008636 This famil	93.0
PF05266	190	DUF724: Protein of unknown function (DUF724); Inte	92.88
PF07926	132	TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro:	92.72
PF10473	140	CENP-F_leu_zip: Leucine-rich repeats of kinetochor	92.59
KOG0804	493	consensus Cytoplasmic Zn-finger protein BRAP2 (BRC	92.39
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	92.38
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	92.22
PF11559	151	ADIP: Afadin- and alpha -actinin-Binding; InterPro	91.89
PF08581	79	Tup_N: Tup N-terminal; InterPro: IPR013890 The N-t	91.77
COG0419	908	SbcC ATPase involved in DNA repair [DNA replicatio	91.59
KOG0249	916	consensus LAR-interacting protein and related prot	91.39
PRK10869	553	recombination and repair protein; Provisional	91.37
PF07106	169	TBPIP: Tat binding protein 1(TBP-1)-interacting pr	91.32
PF09789	319	DUF2353: Uncharacterized coiled-coil protein (DUF2	91.27
PF08614	194	ATG16: Autophagy protein 16 (ATG16); InterPro: IPR	91.26
PF06005	72	DUF904: Protein of unknown function (DUF904); Inte	91.15
PF15619	194	Lebercilin: Ciliary protein causing Leber congenit	91.14
PF10481	307	CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR0	91.12
KOG0999	772	consensus Microtubule-associated protein Bicaudal-	91.03
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	91.02
TIGR01005	754	eps_transp_fam exopolysaccharide transport protein	90.99
TIGR00634	563	recN DNA repair protein RecN. All proteins in this	90.72
PF05010	207	TACC: Transforming acidic coiled-coil-containing p	90.59
PF09789	319	DUF2353: Uncharacterized coiled-coil protein (DUF2	90.55
PF07111	739	HCR: Alpha helical coiled-coil rod protein (HCR);	90.52
PF15619	194	Lebercilin: Ciliary protein causing Leber congenit	90.52
PF05557	722	MAD: Mitotic checkpoint protein; InterPro: IPR0086	90.37
PF05483	786	SCP-1: Synaptonemal complex protein 1 (SCP-1); Int	90.23
PF12325	120	TMF_TATA_bd: TATA element modulatory factor 1 TATA	90.12
TIGR01005	754	eps_transp_fam exopolysaccharide transport protein	89.91
PF05010	207	TACC: Transforming acidic coiled-coil-containing p	89.89
PF04949	159	Transcrip_act: Transcriptional activator; InterPro	89.85
PF11932	251	DUF3450: Protein of unknown function (DUF3450); In	89.55
KOG1853	333	consensus LIS1-interacting protein NUDE [Cytoskele	89.41
PF09762	182	KOG2701: Coiled-coil domain-containing protein (DU	89.38
PF07926	132	TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro:	89.36
COG2433	652	Uncharacterized conserved protein [Function unknow	89.31
PF15066	527	CAGE1: Cancer-associated gene protein 1 family	89.26
KOG4302	660	consensus Microtubule-associated protein essential	89.21
COG2433	652	Uncharacterized conserved protein [Function unknow	89.12
PF04111	314	APG6: Autophagy protein Apg6; InterPro: IPR007243	88.99
PF06785	401	UPF0242: Uncharacterised protein family (UPF0242);	88.42
PF05911	769	DUF869: Plant protein of unknown function (DUF869)	88.41
PF03915	424	AIP3: Actin interacting protein 3; InterPro: IPR02	88.31
PRK14011	144	prefoldin subunit alpha; Provisional	87.91
PF13863	126	DUF4200: Domain of unknown function (DUF4200)	87.9
PF10146	230	zf-C4H2: Zinc finger-containing protein ; InterPro	87.88
PF10186	302	Atg14: UV radiation resistance protein and autopha	87.79
PF11559	151	ADIP: Afadin- and alpha -actinin-Binding; InterPro	87.54
KOG0804	493	consensus Cytoplasmic Zn-finger protein BRAP2 (BRC	87.41
PRK10869	553	recombination and repair protein; Provisional	87.28
KOG0978	698	consensus E3 ubiquitin ligase involved in syntaxin	87.28
TIGR03017	444	EpsF chain length determinant protein EpsF. Sequen	86.93
PF03962	188	Mnd1: Mnd1 family; InterPro: IPR005647 This family	86.85
KOG1003	205	consensus Actin filament-coating protein tropomyos	86.45
PF15188	85	CCDC-167: Coiled-coil domain-containing protein 16	86.4
KOG1962	216	consensus B-cell receptor-associated protein and r	86.32
PF02403	108	Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal dom	86.24
PF12777	344	MT: Microtubule-binding stalk of dynein motor; Int	85.99
PF14915	305	CCDC144C: CCDC144C protein coiled-coil region	85.97
KOG2129	552	consensus Uncharacterized conserved protein H4 [Fu	85.42
KOG1937	521	consensus Uncharacterized conserved protein [Funct	85.12
TIGR03007	498	pepcterm_ChnLen polysaccharide chain length determ	84.92
PF09744	158	Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; Inte	84.75
PF06008	264	Laminin_I: Laminin Domain I; InterPro: IPR009254 L	84.69
PLN02939	977	transferase, transferring glycosyl groups	84.14
KOG4807	593	consensus F-actin binding protein, regulates actin	84.13
TIGR01000	457	bacteriocin_acc bacteriocin secretion accessory pr	84.08
KOG4809	654	consensus Rab6 GTPase-interacting protein involved	83.92
PLN03229	762	acetyl-coenzyme A carboxylase carboxyl transferase	83.81
PF11932	251	DUF3450: Protein of unknown function (DUF3450); In	83.81
PF09738	302	DUF2051: Double stranded RNA binding protein (DUF2	83.69
KOG4403	575	consensus Cell surface glycoprotein STIM, contains	83.22
PF13870	177	DUF4201: Domain of unknown function (DUF4201)	83.21
TIGR01843	423	type_I_hlyD type I secretion membrane fusion prote	83.18
PF05266	190	DUF724: Protein of unknown function (DUF724); Inte	83.18
PF05911	769	DUF869: Plant protein of unknown function (DUF869)	82.56
PF06818	202	Fez1: Fez1; InterPro: IPR009638 This family repres	82.23
PRK10929	1109	putative mechanosensitive channel protein; Provisi	82.1
PF07889	126	DUF1664: Protein of unknown function (DUF1664); In	82.07
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	81.9
smart00806	426	AIP3 Actin interacting protein 3. Aip3p/Bud6p is a	81.73
PF13166	712	AAA_13: AAA domain	81.57
PF09304	107	Cortex-I_coil: Cortexillin I, coiled coil; InterPr	80.92
PRK15422	79	septal ring assembly protein ZapB; Provisional	80.91
PF05546	207	She9_MDM33: She9 / Mdm33 family; InterPro: IPR0088	80.39
PRK03947	140	prefoldin subunit alpha; Reviewed	80.38
PRK10929	1109	putative mechanosensitive channel protein; Provisi	80.17
PF02050	123	FliJ: Flagellar FliJ protein; InterPro: IPR012823	80.12

>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=6.1e-88  Score=701.47  Aligned_cols=546  Identities=30%  Similarity=0.483  Sum_probs=492.6

Q ss_pred             CCCC--CCCCCCCCC--CCC----CCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCChHHHHHHHHHHHH
Q 008135            1 MRGK--VRRRPTESA--LQP----TPDLYG-GNRFGGSRDSDASFASSRPSSIGMG-RASAADLYTDRSHQSSAIRAINA   70 (576)
Q Consensus         1 ~~~~--~~~~~~~~~--~~~----~~~~~~-~~~~~~~r~s~~s~~~sr~s~~g~~-~~~d~rpl~dk~~q~~~~~~i~~   70 (576)
                      ||++  ++|++..|.  .+|    +||.+| ..+.|++|+|++|   ||-|++..- +..||||++||+|+++|++.|++
T Consensus         5 ~r~~~~~~r~t~~p~~~i~P~~~v~~pT~~~~valf~~r~S~~s---~~~~~~~~~~s~~dpRpl~dk~~~s~c~~~I~~   81 (581)
T KOG0995|consen    5 MRRKTAGKRGTGTPSGGINPTKRVTTPTSGTSVALFDRRPSLHS---SRLSSFNTSNSIRDPRPLSDKRYRSQCIRQIYN   81 (581)
T ss_pred             hhccccccccccCCCCCCCCCCCCCCCCCCcccccCCCCccccc---ccccccCchhccCCCCCcccHHHHHHHHHHHHH
Confidence            6733  566565555  233    444444 8899999999997   553333221 11289999999999999999999


Q ss_pred             HhhhCCCC--CCCCCCCCCCHHHHHHHHHHHHHcCCCCC--CcChHhHHHHHHHhcCCCCcccccccccCCCCCChHHHH
Q 008135           71 HLSSHSFH--IAFPLKQVPSVKDITDVIKFLISQLDYPS--TTKFEEDLFVVLKSLSCPFKINKSTLRSPNSPHNWPAYL  146 (576)
Q Consensus        71 fL~~~~~~--~~~k~l~~pt~k~f~~i~~~L~~~ld~~~--~~k~eeev~~~lk~l~yP~~i~ks~l~~~g~~h~wp~~l  146 (576)
                      ||.++||+  +|++.+..||+|||+.||.|||.+|||.+  +.+||+||+++||.|||||.+++|++.|+|+||+||++|
T Consensus        82 fL~engf~~~iS~k~l~~PS~KdF~~iFkfLY~~Ldp~y~f~~r~EeEV~~ilK~L~YPf~~siSs~~a~gspH~WP~iL  161 (581)
T KOG0995|consen   82 FLVENGFSHPISIKLLMKPSVKDFIAIFKFLYGFLDPDYEFPERIEEEVVQILKNLKYPFLLSISSLQAAGSPHNWPHIL  161 (581)
T ss_pred             HHHHcCCCCChhhhhcCCCccccHHHHHHHHHhccCCCcccchhHHHHHHHHHHhCCCCcccchhhhccCCCCCccHHHH
Confidence            99999998  89999999999999999999999999765  699999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhhhhCCcc---c----ccchHHHHHHHHHHHHHHcCCCCCchhhhHHHHHHHHHHHHhHHHHHHHH
Q 008135          147 ALIHWLVQIASYNYHLTTNSKA---F----VENNSMYMYASDSYLNYIEGKDGDVDNIDKGFIEKLEKEKENVSEYVEEL  219 (576)
Q Consensus       147 ~~L~WLv~l~~~~~~~~~~~~~---~----~~~~~~~~y~~~~Y~~fl~g~d~~~~~l~~~~~~kl~~~~~~~~~~~~~L  219 (576)
                      |||||||+|+++..++..+++.   .    ..+..||+|+++||.+||.|+|+ +.+++.+|..+|++.......++..|
T Consensus       162 ~mlhWlvdlI~~~t~~v~~~~l~q~~~ed~~m~k~f~dy~~~~Y~~fl~g~d~-~~~~~~Elk~~l~~~~~~i~~~ie~l  240 (581)
T KOG0995|consen  162 GMLHWLVDLIRINTALVEDSPLEQEEAEDKTMNKLFFDYTIRSYTSFLKGEDN-SSELEDELKHRLEKYFTSIANEIEDL  240 (581)
T ss_pred             HHHHHHHHHHHHhHHHhhccchhccchHHHHHHHHHHHHHHHHHHHHhccCcc-cchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999988776522   1    12247999999999999999998 56899999999998888777777777


Q ss_pred             HHHHHHHHh----ccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135          220 KKKVSEMEG----AMTGPTEREKLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEF  295 (576)
Q Consensus       220 ~~~~~~le~----l~~~~~~l~~l~~~~~~L~~D~~K~~~~i~~l~~~~~~~e~~l~~l~~Ele~~~~e~~~l~~e~~eL  295 (576)
                      ++...+|++    .+..|++.+.+++++++|++|+.||++|+.++..+.+.|++.+..++.|++.++.+++.|+.++.+|
T Consensus       241 ~~~n~~l~e~i~e~ek~~~~~eslre~~~~L~~D~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~L  320 (581)
T KOG0995|consen  241 KKTNRELEEMINEREKDPGKEESLREKKARLQDDVNKFQAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDEL  320 (581)
T ss_pred             HHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            766666555    6789999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHccCC-ccee--
Q 008135          296 KKRVKLQTINARDVERMRRELQAVERDIADAENARNEWESKTWDLDSKLGRKFKELEALSMECNQAMKRLKLA-TEIQ--  372 (576)
Q Consensus       296 ~~~l~~Q~~s~~di~r~~~Er~~L~~~l~~~e~~~~~l~~~~~~~e~~l~~~~e~le~l~~~yn~~~~kl~l~-~d~~--  372 (576)
                      +++|+.|++|++||++||.|+.+|.++++.+..+++.|.+.+|+++..+...++++++++.+||+++++|+++ ..+.  
T Consensus       321 k~~Ie~Q~iS~~dve~mn~Er~~l~r~l~~i~~~~d~l~k~vw~~~l~~~~~f~~le~~~~~~~~l~~~i~l~~~~~~~n  400 (581)
T KOG0995|consen  321 KKQIELQGISGEDVERMNLERNKLKRELNKIQSELDRLSKEVWELKLEIEDFFKELEKKFIDLNSLIRRIKLGIAENSKN  400 (581)
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999986 3322  


Q ss_pred             EeeCCCCCCCccccchhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 008135          373 YSLNSNGSTPSEVMGVDYKSTLKPALESFADDVKRSSVEKLEELISLQQQSSEMAAKIEGKRKRIDALQFHINEMETQLN  452 (576)
Q Consensus       373 ~~ln~~~~~~~ei~~~~~k~~ik~~L~~l~~ei~~~~~~~~~e~~~Lq~~l~~l~~~ieek~~~l~~Le~kl~~l~~ql~  452 (576)
                      +.+|+.+..+   .+++|+..++|.|.+++++|+..++....++..||+.+++++..++++...+..++.++..+.+.|+
T Consensus       401 ~~~~pe~~~~---~~~d~k~~V~~~l~el~~ei~~~~~~~~~~~~tLq~~~~~~~~~i~E~~~~l~~~~~el~~~~~~~~  477 (581)
T KOG0995|consen  401 LERNPERAAT---NGVDLKSYVKPLLKELLDEISEELHEAENELETLQEHFSNKASTIEEKIQILGEIELELKKAESKYE  477 (581)
T ss_pred             CCcCCccCcc---ccccchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3456655555   5899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135          453 LLSKETQEITKRCAEEAKKMEEDIQTEAHNLDMVEREAVEVLKASESKFQEAIRQCEEEIQIRALDLFALVDSVSKYKER  532 (576)
Q Consensus       453 ~lk~e~eee~~~~~~Ei~kl~eele~~~~~~~~~~~ea~~el~~~~~~~ee~~~e~eeek~~l~~el~~l~~~i~k~K~~  532 (576)
                      ..+++.+++...|..|+++|++++..++-.+....++|.+.+++++..++.+..++++++++++++|..+++.|.++|..
T Consensus       478 ~~k~e~eee~~k~~~E~e~le~~l~~l~l~~~~~m~~a~~~v~s~e~el~~~~~~~~eer~ki~~ql~~~i~~i~~~k~~  557 (581)
T KOG0995|consen  478 LKKEEAEEEWKKCRKEIEKLEEELLNLKLVLNTSMKEAEELVKSIELELDRMVATGEEERQKIAKQLFAVIDQISDFKVS  557 (581)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999998888888999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhHHHHHHHHHHHH
Q 008135          533 MESKISKMNKGISETALTVSE  553 (576)
Q Consensus       533 i~~~i~~~~~~~~~~~~~i~~  553 (576)
                      |++.|++.+.++...+++|..
T Consensus       558 iqs~le~~k~~~~~~~~ei~~  578 (581)
T KOG0995|consen  558 IQSSLENLKADLHKECEEIEK  578 (581)
T ss_pred             HHHHHHHHHHHHHHHHHHHHh
Confidence            999999999988888777743

>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]

Probab=100.00  E-value=7.2e-71  Score=555.25  Aligned_cols=495  Identities=19%  Similarity=0.308  Sum_probs=444.6

Q ss_pred             CCCCCCChHHHHHHHHHHHHHhhhCCCC--CCCCCCCCCCHHHHHHHHHHHHHcCCCCC--CcChHhHHHHHHHhcCCCC
Q 008135           51 AADLYTDRSHQSSAIRAINAHLSSHSFH--IAFPLKQVPSVKDITDVIKFLISQLDYPS--TTKFEEDLFVVLKSLSCPF  126 (576)
Q Consensus        51 d~rpl~dk~~q~~~~~~i~~fL~~~~~~--~~~k~l~~pt~k~f~~i~~~L~~~ld~~~--~~k~eeev~~~lk~l~yP~  126 (576)
                      |||||+||+||++|...|++||.++||+  ++++.+..||+|+|+.||+|||.++||.|  ++.+|+||+.+||.|+|||
T Consensus        96 DpRplrdk~yqq~c~~~I~~yL~engfd~pis~k~l~~PS~k~F~~IFK~LY~~lDp~f~F~~r~E~eV~~~lKnL~YPf  175 (622)
T COG5185          96 DPRPLRDKNYQQACQEEIYDYLKENGFDIPISIKFLKQPSQKGFIIIFKWLYLRLDPGFGFTKRIENEVYQILKNLRYPF  175 (622)
T ss_pred             CCcccccchHHHHHHHHHHHHHHHcCCCcchhHHHhcCCccccHHHHHHHHHhccCCCCCcchhhHHHHHHHHHhcCCch
Confidence            9999999999999999999999999995  78899999999999999999999999665  9999999999999999999


Q ss_pred             --cccccccccCCCCCChHHHHHHHHHHHHHHHHhhhhhhCCcc--------cccchHHHHHHHHHHHHHHcCCCCCchh
Q 008135          127 --KINKSTLRSPNSPHNWPAYLALIHWLVQIASYNYHLTTNSKA--------FVENNSMYMYASDSYLNYIEGKDGDVDN  196 (576)
Q Consensus       127 --~i~ks~l~~~g~~h~wp~~l~~L~WLv~l~~~~~~~~~~~~~--------~~~~~~~~~y~~~~Y~~fl~g~d~~~~~  196 (576)
                        .|+||+|+|+ +||+||.+||||||+|+|+...+.+-.....        ..++..||+|++++|+.||.|+|++. +
T Consensus       176 l~sI~kSqlsAI-~ph~Wp~iLgMlhW~V~li~~~~~~~~~~~tl~qq~~~e~~Vek~lfdY~~~~Y~~fl~~~~~~~-~  253 (622)
T COG5185         176 LESINKSQLSAI-GPHNWPKILGMLHWMVRLIIKLDMCLQPLKTLDQQDRYELMVEKLLFDYFTESYKSFLKLEDNYE-P  253 (622)
T ss_pred             hhhhhHhHhhcc-CCcchHHHHHHHHHHHHHHHHHHHHHhhhchHhhccHHHHHHHHHHHHHHHHHHHHHhcCCCccC-c
Confidence              9999999998 7899999999999999999865544322111        23557899999999999999999764 4


Q ss_pred             hhHHHHHHHHH-------HHHhHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135          197 IDKGFIEKLEK-------EKENVSEYVEELKKKVSEMEGAMTGPTEREKLEKEKCVLEEDLNKFNAIIGELNMRKEKMEK  269 (576)
Q Consensus       197 l~~~~~~kl~~-------~~~~~~~~~~~L~~~~~~le~l~~~~~~l~~l~~~~~~L~~D~~K~~~~i~~l~~~~~~~e~  269 (576)
                      .+.+|...+.+       +++++..+...|.+.+.+.+.+   ...++.+++++.+|+.|..||++|+..|+.+..+|..
T Consensus       254 ~e~Elk~~f~~~~~~i~~~i~~lk~~n~~l~e~i~ea~k~---s~~i~~l~ek~r~l~~D~nk~~~~~~~mk~K~~~~~g  330 (622)
T COG5185         254 SEQELKLGFEKFVHIINTDIANLKTQNDNLYEKIQEAMKI---SQKIKTLREKWRALKSDSNKYENYVNAMKQKSQEWPG  330 (622)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcch
Confidence            55555444443       4455555555555555554432   2478899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 008135          270 LVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRRELQAVERDIADAENARNEWESKTWDLDSKLGRKFK  349 (576)
Q Consensus       270 ~l~~l~~Ele~~~~e~~~l~~e~~eL~~~l~~Q~~s~~di~r~~~Er~~L~~~l~~~e~~~~~l~~~~~~~e~~l~~~~e  349 (576)
                      .+..++.+++.++.+++.|+..+.+|..+|..|++|+++++.|+.||.+|.+.|+...-+.+.|.+.+.+.+......++
T Consensus       331 ~l~kl~~eie~kEeei~~L~~~~d~L~~q~~kq~Is~e~fe~mn~Ere~L~reL~~i~~~~~~L~k~V~~~~leaq~~~~  410 (622)
T COG5185         331 KLEKLKSEIELKEEEIKALQSNIDELHKQLRKQGISTEQFELMNQEREKLTRELDKINIQSDKLTKSVKSRKLEAQGIFK  410 (622)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHhHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHccC--------CcceeEeeCCCCCCCccccchhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135          350 ELEALSMECNQAMKRLKL--------ATEIQYSLNSNGSTPSEVMGVDYKSTLKPALESFADDVKRSSVEKLEELISLQQ  421 (576)
Q Consensus       350 ~le~l~~~yn~~~~kl~l--------~~d~~~~ln~~~~~~~ei~~~~~k~~ik~~L~~l~~ei~~~~~~~~~e~~~Lq~  421 (576)
                      ++++.+.+||.+...|++        +.|+.+.+|..+..|   .+.++++.|++.+.+|++++.-+++......++|++
T Consensus       411 slek~~~~~~sl~~~i~~~~~~i~~~~nd~~l~iN~E~~~~---~~sg~~~~I~~~i~eln~~i~~~~~~e~nksi~Lee  487 (622)
T COG5185         411 SLEKTLRQYDSLIQNITRSRSQIGHNVNDSSLKINIEQLFP---KGSGINESIKKSILELNDEIQERIKTEENKSITLEE  487 (622)
T ss_pred             HHHHHHHHHHHHHHHhcccHHHHhhcCCCCceeeccccCCc---cccCchHhHHHHHHHHhHHHHHHHHHHhccceeHHH
Confidence            999999999999999987        578999999877666   478899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 008135          422 QSSEMAAKIEGKRKRIDALQFHINEMETQLNLLSKETQEITKRCAEEAKKMEEDIQTEAHNLDMVEREAVEVLKASESKF  501 (576)
Q Consensus       422 ~l~~l~~~ieek~~~l~~Le~kl~~l~~ql~~lk~e~eee~~~~~~Ei~kl~eele~~~~~~~~~~~ea~~el~~~~~~~  501 (576)
                      .++.+...+.++...+..++.++....+.|...+++.+++.....+|+++|+.++..++-.+..-...+++.+...+-.+
T Consensus       488 ~i~~~~~~i~El~~~l~~~e~~L~~a~s~~~~~ke~~e~e~~a~~~E~eklE~el~~lnL~s~ts~l~~eq~vqs~~i~l  567 (622)
T COG5185         488 DIKNLKHDINELTQILEKLELELSEANSKFELSKEENERELVAQRIEIEKLEKELNDLNLLSKTSILDAEQLVQSTEIKL  567 (622)
T ss_pred             HhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhccchHhhHHHHHHHHHhhH
Confidence            99999999999999999999999999999999999999999999999999999999987555544456778889999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 008135          502 QEAIRQCEEEIQIRALDLFALVDSVSKYKERMESKISKMNKGISETALTVSE  553 (576)
Q Consensus       502 ee~~~e~eeek~~l~~el~~l~~~i~k~K~~i~~~i~~~~~~~~~~~~~i~~  553 (576)
                      +.+...++++|..+++++..+++.+.+||.+||..+++++-++-..++++..
T Consensus       568 d~~~~~~n~~r~~i~k~V~~v~~~~~~fk~~IQssledl~~~l~k~~~~l~~  619 (622)
T COG5185         568 DELKVDLNRKRYKIHKQVIHVIDITSKFKINIQSSLEDLENELGKVIEELRN  619 (622)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHhhHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999999888877777653

>PF03801 Ndc80_HEC: HEC/Ndc80p family; InterPro: IPR005550 Members of this family are components of the mitotic spindle

Probab=100.00  E-value=2.2e-37  Score=285.56  Aligned_cols=141  Identities=40%  Similarity=0.643  Sum_probs=96.3

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhhCCC---CCCCCCCCCCCHHHHHHHHHHH
Q 008135           23 GNRFGGSRDSDASFASSRPSSIGMGRASAADLYTDRSHQSSAIRAINAHLSSHSF---HIAFPLKQVPSVKDITDVIKFL   99 (576)
Q Consensus        23 ~~~~~~~r~s~~s~~~sr~s~~g~~~~~d~rpl~dk~~q~~~~~~i~~fL~~~~~---~~~~k~l~~pt~k~f~~i~~~L   99 (576)
                      +.+.||+|+|.+++.++++++.+    .||||++||+||++|++.|++||.++||   +++.+.|.+||.|||+.||+||
T Consensus         4 rss~~~~R~S~~~~~~~~~~~~~----~d~Rpl~Dk~~q~~~~~~I~~fL~~~~~~~~~is~k~l~~Pt~kdf~~I~~fL   79 (157)
T PF03801_consen    4 RSSVFGSRSSSASSSSSQPSSPQ----KDPRPLSDKSYQQECIRKIYEFLSEHGFESHPISPKTLKSPTQKDFVEIFNFL   79 (157)
T ss_dssp             ---------------------------S--S-TT-HHHHHHHHHHHHHHHHHTT--SS---TTTTSS--HHHHHHHHHHH
T ss_pred             cccccCCCCCCCCCCCCCCCCCC----CCCCCCCCHHHHHHHHHHHHHHHHHcCCCCccccccccCCCCHHHHHHHHHHH
Confidence            34667788888866555554433    3799999999999999999999999999   5788999999999999999999


Q ss_pred             HHcCCCCC--CcChHhHHHHHHHhcCCCC-cccccccccCCCCCChHHHHHHHHHHHHHHHHhhhhhhCCc
Q 008135          100 ISQLDYPS--TTKFEEDLFVVLKSLSCPF-KINKSTLRSPNSPHNWPAYLALIHWLVQIASYNYHLTTNSK  167 (576)
Q Consensus       100 ~~~ld~~~--~~k~eeev~~~lk~l~yP~-~i~ks~l~~~g~~h~wp~~l~~L~WLv~l~~~~~~~~~~~~  167 (576)
                      +++||+.+  ++++||||+.+||.||||| +|+||+|.|||+||+||++||+|+|||+|+.+.+.+.....
T Consensus        80 ~~~idp~~~~~~k~eeev~~~lK~L~YP~~~isKS~L~a~gs~hsWP~lL~~L~WLv~l~~~~~~~~~~~~  150 (157)
T PF03801_consen   80 FRQIDPNFKFGKKFEEEVPFLLKALGYPFATISKSSLQAPGSPHSWPHLLGALHWLVELIKYEEELDSNSE  150 (157)
T ss_dssp             HHTTSTT---SSTHHHHHHHHHHHTT-SS----HHHHHSTTSTTTHHHHHHHHHHHHHHHHHHHHHTT---
T ss_pred             HHHhCCCCCcCcCHHHHHHHHHHHhCCCccccCHHHccCCCCcccHHHHHHHHHHHHHHHHHHHHHhccCc
Confidence            99999654  7799999999999999999 99999999999999999999999999999999998876553

It has been shown that Ndc80 from yeast is part of a complex called the Ndc80p complex []. This complex is thought to bind to the microtubules of the spindle.; PDB: 3IZ0_E 2VE7_B 2IGP_A.

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=99.61  E-value=1.1e-11  Score=149.18  Aligned_cols=84  Identities=18%  Similarity=0.271  Sum_probs=69.0

Q ss_pred             HhHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 008135          464 RCAEEAKKMEEDIQTEA-HNLDMVEREAVEVLKASESKFQEAIRQCEEEIQIRALDLFALVDSVSKYKERMESKISKMNK  542 (576)
Q Consensus       464 ~~~~Ei~kl~eele~~~-~~~~~~~~ea~~el~~~~~~~ee~~~e~eeek~~l~~el~~l~~~i~k~K~~i~~~i~~~~~  542 (576)
                      .+..++..++.+++.++ +|+.++     ++|+.++.+|..+.    .++..+...+..+.+.|...        +....
T Consensus       946 ~~~~~i~~le~~i~~lg~VN~~Ai-----ee~e~~~~r~~~l~----~~~~dl~~a~~~l~~~i~~~--------d~~~~ 1008 (1163)
T COG1196         946 ELEREIERLEEEIEALGPVNLRAI-----EEYEEVEERYEELK----SQREDLEEAKEKLLEVIEEL--------DKEKR 1008 (1163)
T ss_pred             HHHHHHHHHHHHHHhccCCChhHH-----HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH--------HHHHH
Confidence            45677888888888886 888888     99999999999988    77777777777777777777        44333


Q ss_pred             -HHHHHHHHHHHHHhcccccccc
Q 008135          543 -GISETALTVSEAYKNSLPAQFS  564 (576)
Q Consensus       543 -~~~~~~~~i~~~f~~~~~~~~~  564 (576)
                       .|+++|..||.+|..+|+.-||
T Consensus      1009 ~~f~~~f~~In~~F~~if~~L~~ 1031 (1163)
T COG1196        1009 ERFKETFDKINENFSEIFKELFG 1031 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCC
Confidence             3999999999999999999988

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=99.53  E-value=9.8e-11  Score=142.03  Aligned_cols=83  Identities=14%  Similarity=0.214  Sum_probs=54.0

Q ss_pred             HHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 008135          466 AEEAKKMEEDIQTEA-HNLDMVEREAVEVLKASESKFQEAIRQCEEEIQIRALDLFALVDSVSKYKERMESKISKMNKGI  544 (576)
Q Consensus       466 ~~Ei~kl~eele~~~-~~~~~~~~ea~~el~~~~~~~ee~~~e~eeek~~l~~el~~l~~~i~k~K~~i~~~i~~~~~~~  544 (576)
                      ..++..+..+|..++ +|+.++     .+|..+..+|+.+.    .....+...+..+.+.|....       ..+...|
T Consensus       957 ~~~l~~l~~~i~~l~~vN~~Ai-----~~~~~~~~~~~~l~----~q~~dl~~~~~~l~~~i~~l~-------~~~~~~f 1020 (1164)
T TIGR02169       957 QAELQRVEEEIRALEPVNMLAI-----QEYEEVLKRLDELK----EKRAKLEEERKAILERIEEYE-------KKKREVF 1020 (1164)
T ss_pred             HHHHHHHHHHHHHcCCCChHHH-----HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH-------HHHHHHH
Confidence            334555555555554 566655     77777777777777    444445555555555444442       2234449


Q ss_pred             HHHHHHHHHHHhcccccccc
Q 008135          545 SETALTVSEAYKNSLPAQFS  564 (576)
Q Consensus       545 ~~~~~~i~~~f~~~~~~~~~  564 (576)
                      +++|..|+.+|..+|..-||
T Consensus      1021 ~~~f~~~~~~f~~~~~~l~~ 1040 (1164)
T TIGR02169      1021 MEAFEAINENFNEIFAELSG 1040 (1164)
T ss_pred             HHHHHHHHHHHHHHHHHHhC
Confidence            99999999999999988874

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]

Probab=99.37  E-value=1e-08  Score=124.11  Aligned_cols=304  Identities=20%  Similarity=0.271  Sum_probs=199.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHH
Q 008135          239 LEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIG-------KKVEEHKRICEENEEFKKRVKLQTINARDVER  311 (576)
Q Consensus       239 l~~~~~~L~~D~~K~~~~i~~l~~~~~~~e~~l~~l~~Ele-------~~~~e~~~l~~e~~eL~~~l~~Q~~s~~di~r  311 (576)
                      .+.+...++..+...+..+..++..+.+++..+.++.++++       ..+....++..+.++|+.+++.|+-+......
T Consensus      1074 ke~El~~l~~k~e~e~~~~~~l~k~i~eL~~~i~el~e~le~er~~r~K~ek~r~dL~~ele~l~~~Lee~~~~t~~q~e 1153 (1930)
T KOG0161|consen 1074 KESELSQLQSKLEDEQAEVAQLQKQIKELEARIKELEEELEAERASRAKAERQRRDLSEELEELKEELEEQGGTTAAQLE 1153 (1930)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence            33344444444555555555555555555555555555554       44467778899999999999999777777777


Q ss_pred             HHHHH----HHHHHHHHH----HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHccCC-cceeEeeCCCCCCC
Q 008135          312 MRREL----QAVERDIAD----AENARNEWESKTWDLDSKLGRKFKELEALSMECNQAMKRLKLA-TEIQYSLNSNGSTP  382 (576)
Q Consensus       312 ~~~Er----~~L~~~l~~----~e~~~~~l~~~~~~~e~~l~~~~e~le~l~~~yn~~~~kl~l~-~d~~~~ln~~~~~~  382 (576)
                      ++..+    ..+.+++++    .+..+..+++++.+.-..+..+++++...-.....-...+... .++...+......-
T Consensus      1154 ~~~k~e~e~~~l~~~leee~~~~e~~~~~lr~~~~~~~~el~~qle~l~~~k~~lekek~~lq~e~~~l~~ev~~~~~~k 1233 (1930)
T KOG0161|consen 1154 LNKKREAEVQKLRRDLEEETLDHEAQIEELRKKHADSLAELQEQLEQLQKDKAKLEKEKSDLQREIADLAAELEQLSSEK 1233 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            77443    566666654    3667777777776666666666666653322222111111110 11111111111000


Q ss_pred             ccccchhhhhchHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135          383 SEVMGVDYKSTLKPALESF---ADDVKRSSVEKLEELISLQQQSSEMAAKIEGKRKRIDALQFHINEMETQLNLLSKETQ  459 (576)
Q Consensus       383 ~ei~~~~~k~~ik~~L~~l---~~ei~~~~~~~~~e~~~Lq~~l~~l~~~ieek~~~l~~Le~kl~~l~~ql~~lk~e~e  459 (576)
                      .+  .......+...|.++   .+++.+.+..+......+..++..+.+.+++.+..++++......+..+++.++.+++
T Consensus      1234 ~~--~e~~~k~~E~~l~elq~k~~~~~~~~~~l~~q~~~l~~E~~~l~~~lee~e~~~~~~~r~~~~~~~qle~~k~qle 1311 (1930)
T KOG0161|consen 1234 KD--LEKKDKKLEAQLSELQLKLDEQERLRNDLTAKRSRLQNENEELSRQLEEAEAKLSALSRDKQALESQLEELKRQLE 1311 (1930)
T ss_pred             cc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            00  122223344455544   6667777778888899999999999999999999999999999999999999999999


Q ss_pred             HHHHHh----------HHHHHHHHHHHHHH---HhhhhHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Q 008135          460 EITKRC----------AEEAKKMEEDIQTE---AHNLDMVEREAVEVLKASESKFQEAIR----QCEEEIQIRALDLFAL  522 (576)
Q Consensus       460 ee~~~~----------~~Ei~kl~eele~~---~~~~~~~~~ea~~el~~~~~~~ee~~~----e~eeek~~l~~el~~l  522 (576)
                      ++....          ..+...+.+.++..   +.++....++++.++.+|..++++...    +.++.++.++..+..+
T Consensus      1312 ~e~r~k~~l~~~l~~l~~e~~~l~e~leee~e~~~~l~r~lsk~~~e~~~~~~k~e~~~~~~~eelee~kk~l~~~lq~~ 1391 (1930)
T KOG0161|consen 1312 EETREKSALENALRQLEHELDLLREQLEEEQEAKNELERKLSKANAELAQWKKKFEEEVLQRLEELEELKKKLQQRLQEL 1391 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence            888733          23666666666664   255555668899999999999999333    6777888888877776


Q ss_pred             HH----------HHHHHHHHHHHHHHHHhHHH
Q 008135          523 VD----------SVSKYKERMESKISKMNKGI  544 (576)
Q Consensus       523 ~~----------~i~k~K~~i~~~i~~~~~~~  544 (576)
                      -+          .+++.+..++..+++...++
T Consensus      1392 qe~~e~~~~~~~~Lek~k~~l~~el~d~~~d~ 1423 (1930)
T KOG0161|consen 1392 EEQIEAANAKNASLEKAKNRLQQELEDLQLDL 1423 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence            64          44677888888888866554

>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=99.15  E-value=1e-06  Score=100.38  Aligned_cols=64  Identities=23%  Similarity=0.263  Sum_probs=45.4

Q ss_pred             HHHHHHcCCCCCCcChHh--HHHHHHHh--cCCCCccc--ccc-----cccCCCCCChHHHHHHHHHHHHHHHHh-hhhh
Q 008135           96 IKFLISQLDYPSTTKFEE--DLFVVLKS--LSCPFKIN--KST-----LRSPNSPHNWPAYLALIHWLVQIASYN-YHLT  163 (576)
Q Consensus        96 ~~~L~~~ld~~~~~k~ee--ev~~~lk~--l~yP~~i~--ks~-----l~~~g~~h~wp~~l~~L~WLv~l~~~~-~~~~  163 (576)
                      +.-.+..|||.++++.++  +++.||+.  |||.-+|.  |-.     +.++.+|.+.|       .|.|||++. +.+.
T Consensus       636 IsTac~~LdyiVVdt~e~aq~cI~fl~~~nLgraTFi~LDki~~~~~~l~~i~tpenvP-------RLfDLv~~~d~~~r  708 (1293)
T KOG0996|consen  636 ISTACARLDYIVVDTIETAQECINFLKKNNLGRATFIILDKIKDHQKKLAPITTPENVP-------RLFDLVKCKDEKFR  708 (1293)
T ss_pred             HHHhccccceEEeccHHHHHHHHHHHHHcCCCceeEEehHhhhhhhhccCCCCCCCCcc-------hHhhhhccCCHHHH
Confidence            444788899999999988  89999998  55543333  333     66788888888       577777776 4444


Q ss_pred             hCC
Q 008135          164 TNS  166 (576)
Q Consensus       164 ~~~  166 (576)
                      ...
T Consensus       709 ~aF  711 (1293)
T KOG0996|consen  709 PAF  711 (1293)
T ss_pred             HHH
Confidence            433

>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=99.05  E-value=1.7e-06  Score=97.15  Aligned_cols=80  Identities=19%  Similarity=0.275  Sum_probs=52.8

Q ss_pred             HhHHHHHHHHHHHHHHH--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008135          464 RCAEEAKKMEEDIQTEA--HNLDMVEREAVEVLKASESKFQEAIRQCEEEIQIRALDLFALVDSVSKYKERMESKISKMN  541 (576)
Q Consensus       464 ~~~~Ei~kl~eele~~~--~~~~~~~~ea~~el~~~~~~~ee~~~e~eeek~~l~~el~~l~~~i~k~K~~i~~~i~~~~  541 (576)
                      .+..++.+|.+..+.++  +|+..+     .-++.++.++-               ++......|+++|.+|+.+|+.++
T Consensus       962 ~are~l~~Lq~k~~~l~k~vn~~~m-----~mle~~E~~~~---------------~lk~k~~~Ie~Dk~kI~ktI~~lD 1021 (1174)
T KOG0933|consen  962 EAREELKKLQEKKEKLEKTVNPKNM-----DMLERAEEKEA---------------ALKTKKEIIEKDKSKIKKTIEKLD 1021 (1174)
T ss_pred             HHHHHHHHhhHHHHHHHhhcCHHHH-----HHHHHHHHHHH---------------HHHHHHHHHHhhHHHHHHHHHHHH
Confidence            44556666666666664  444433     44444444433               444556677778888888777766


Q ss_pred             HH----HHHHHHHHHHHHhccccccc
Q 008135          542 KG----ISETALTVSEAYKNSLPAQF  563 (576)
Q Consensus       542 ~~----~~~~~~~i~~~f~~~~~~~~  563 (576)
                      +.    +.-|...||..|-.||+--+
T Consensus      1022 e~k~~~L~kaw~~VN~dFG~IFs~LL 1047 (1174)
T KOG0933|consen 1022 EKKREELNKAWEKVNKDFGSIFSTLL 1047 (1174)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHhC
Confidence            43    88999999999999997544

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=99.01  E-value=6.5e-06  Score=100.19  Aligned_cols=26  Identities=8%  Similarity=0.019  Sum_probs=19.8

Q ss_pred             HhHHH---HHHHHHHHHHHhccccccccc
Q 008135          540 MNKGI---SETALTVSEAYKNSLPAQFSI  565 (576)
Q Consensus       540 ~~~~~---~~~~~~i~~~f~~~~~~~~~~  565 (576)
                      +..-|   +++|..|+++|..+|++-|+.
T Consensus      1023 ~~~~f~~~~~~F~~v~~~f~~~F~~lf~~ 1051 (1179)
T TIGR02168      1023 IEEIDREARERFKDTFDQVNENFQRVFPK 1051 (1179)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34446   888888888888888888864

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=98.96  E-value=7.8e-06  Score=99.51  Aligned_cols=68  Identities=16%  Similarity=0.236  Sum_probs=47.5

Q ss_pred             HHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhccccccc
Q 008135          492 EVLKASE----SKFQEAIRQCEEEIQIRALDLFALVDSVSKYKERMESKISKMNKGISETALTVSEAYKNSLPAQF  563 (576)
Q Consensus       492 ~el~~~~----~~~ee~~~e~eeek~~l~~el~~l~~~i~k~K~~i~~~i~~~~~~~~~~~~~i~~~f~~~~~~~~  563 (576)
                      ++|..+.    .+|+.+.    .....|...+..+...|......+.........-|..++..++..|+.+|..-+
T Consensus       982 ee~~~~~~~a~er~~~l~----~q~~dL~~~~~~L~~~i~~i~~~~~~~f~~~~~~F~~v~~~f~~~F~~lf~~~~ 1053 (1179)
T TIGR02168       982 KELGPVNLAAIEEYEELK----ERYDFLTAQKEDLTEAKETLEEAIEEIDREARERFKDTFDQVNENFQRVFPKLF 1053 (1179)
T ss_pred             HHcCCCCHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            5555555    5565555    556666666666666666666666666666666699999999999999998654

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril

Probab=98.77  E-value=1.3e-09  Score=126.76  Aligned_cols=304  Identities=20%  Similarity=0.306  Sum_probs=0.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhcCCHH
Q 008135          235 EREKLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKV-------EEHKRICEENEEFKKRVKLQTINAR  307 (576)
Q Consensus       235 ~l~~l~~~~~~L~~D~~K~~~~i~~l~~~~~~~e~~l~~l~~Ele~~~-------~e~~~l~~e~~eL~~~l~~Q~~s~~  307 (576)
                      .+...+.++..+...+..-++.+..++..+.+++..|.+++++|++..       ....+|..++.+|...+...+.++.
T Consensus        12 ~l~kke~El~~~~~~~e~e~~~~~~l~k~~kelq~~i~el~eeLe~Er~~R~kaek~r~dL~~ELe~l~~~Lee~~~~t~   91 (859)
T PF01576_consen   12 QLKKKEEELSQLNSKLEDEQALRAQLQKKIKELQARIEELEEELESERQARAKAEKQRRDLSEELEELKERLEEAGGATQ   91 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHH
Confidence            444555677778888888888999999999999999999999998654       4556899999999999999998888


Q ss_pred             HHHHHHHHH----HHHHHHHHHH----HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHccC-CcceeEeeCCC
Q 008135          308 DVERMRREL----QAVERDIADA----ENARNEWESKTWDLDSKLGRKFKELEALSMECNQAMKRLKL-ATEIQYSLNSN  378 (576)
Q Consensus       308 di~r~~~Er----~~L~~~l~~~----e~~~~~l~~~~~~~e~~l~~~~e~le~l~~~yn~~~~kl~l-~~d~~~~ln~~  378 (576)
                      ....+++.|    ..|+++|++.    +..+..+.+++.+.-..+...++.+.+.-.       ++.. ...++.++++.
T Consensus        92 aq~E~~kkrE~El~~Lrr~LEe~~~~~e~~~~~lrkkh~~~~~eL~eqle~lqk~k~-------~lEK~k~~l~~e~~dL  164 (859)
T PF01576_consen   92 AQIELNKKREAELAKLRRDLEEANLQHEATLAELRKKHQDAVAELNEQLEQLQKQKA-------KLEKEKSQLEAELDDL  164 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHhHHHHH
Confidence            888887665    6788888643    567778888877766667767766666532       2221 23344444433


Q ss_pred             CCCCcccc-----chhhhhchHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 008135          379 GSTPSEVM-----GVDYKSTLKPALESF---ADDVKRSSVEKLEELISLQQQSSEMAAKIEGKRKRIDALQFHINEMETQ  450 (576)
Q Consensus       379 ~~~~~ei~-----~~~~k~~ik~~L~~l---~~ei~~~~~~~~~e~~~Lq~~l~~l~~~ieek~~~l~~Le~kl~~l~~q  450 (576)
                      ....+.+.     .......+...|..+   .++..+.+.++.....+|+.+++++...+++.+..+..|......+.++
T Consensus       165 ~~~l~~~~k~k~~~Ek~~K~lE~qL~El~~klee~er~~~el~~~k~kL~~E~~eL~~qLee~e~~~~~l~r~k~~L~~q  244 (859)
T PF01576_consen  165 QAQLDSLQKAKQEAEKKRKQLEAQLNELQAKLEESERQRNELTEQKAKLQSENSELTRQLEEAESQLSQLQREKSSLESQ  244 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            32222222     223334556666666   6667888888999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHh----------HHHHHHHHHHHHHH---HhhhhHHHHHHHHHHHHHHHHHHHH-HH---HHHHHHH
Q 008135          451 LNLLSKETQEITKRC----------AEEAKKMEEDIQTE---AHNLDMVEREAVEVLKASESKFQEA-IR---QCEEEIQ  513 (576)
Q Consensus       451 l~~lk~e~eee~~~~----------~~Ei~kl~eele~~---~~~~~~~~~ea~~el~~~~~~~ee~-~~---e~eeek~  513 (576)
                      ++.++..++++....          ..+++.+++.++..   +.++....+.++.++..|+.+|+.- ..   ++++.++
T Consensus       245 Leelk~~leeEtr~k~~L~~~l~~le~e~~~L~eqleeE~e~k~~l~~qlsk~~~El~~~k~K~e~e~~~~~EelEeaKK  324 (859)
T PF01576_consen  245 LEELKRQLEEETRAKQALEKQLRQLEHELEQLREQLEEEEEAKSELERQLSKLNAELEQWKKKYEEEAEQRTEELEEAKK  324 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHhhHHHHHhHhhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence            999999998887622          23566666666654   2455545578899999999999993 33   6788899


Q ss_pred             HHHHHHHHHHH----------HHHHHHHHHHHHHHHHhHHHH
Q 008135          514 IRALDLFALVD----------SVSKYKERMESKISKMNKGIS  545 (576)
Q Consensus       514 ~l~~el~~l~~----------~i~k~K~~i~~~i~~~~~~~~  545 (576)
                      ++..+|..+-+          .+.+.|.++++.++++..++=
T Consensus       325 kL~~~L~el~e~le~~~~~~~~LeK~k~rL~~EleDl~~eLe  366 (859)
T PF01576_consen  325 KLERKLQELQEQLEEANAKVSSLEKTKKRLQGELEDLTSELE  366 (859)
T ss_dssp             ------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99998888874          447778889999988776543

Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.

>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]

Probab=98.75  E-value=0.00067  Score=73.05  Aligned_cols=112  Identities=15%  Similarity=0.130  Sum_probs=58.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhhHHHHHH
Q 008135          411 EKLEELISLQQQSSEMAAKIEGKRKRIDALQFHINEMETQLNLLSKETQEITKRCAEEAKKMEEDIQTEAHNLDMVEREA  490 (576)
Q Consensus       411 ~~~~e~~~Lq~~l~~l~~~ieek~~~l~~Le~kl~~l~~ql~~lk~e~eee~~~~~~Ei~kl~eele~~~~~~~~~~~ea  490 (576)
                      ++.+++...+..+..+...+.++...++.+...+..++.++..+....+........+-.+.+.+++.+..+++......
T Consensus       429 ei~~~~~~~~~~~~tLq~~~~~~~~~i~E~~~~l~~~~~el~~~~~~~~~~k~e~eee~~k~~~E~e~le~~l~~l~l~~  508 (581)
T KOG0995|consen  429 EISEELHEAENELETLQEHFSNKASTIEEKIQILGEIELELKKAESKYELKKEEAEEEWKKCRKEIEKLEEELLNLKLVL  508 (581)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445555555555666666666666666665555555555555555544444444444555555555544444443444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135          491 VEVLKASESKFQEAIRQCEEEIQIRALDLFAL  522 (576)
Q Consensus       491 ~~el~~~~~~~ee~~~e~eeek~~l~~el~~l  522 (576)
                      +..+.......+....++++-..++..++..+
T Consensus       509 ~~~m~~a~~~v~s~e~el~~~~~~~~eer~ki  540 (581)
T KOG0995|consen  509 NTSMKEAEELVKSIELELDRMVATGEEERQKI  540 (581)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45555555555555545555444444444444

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=98.70  E-value=0.00059  Score=70.83  Aligned_cols=66  Identities=21%  Similarity=0.313  Sum_probs=34.8

Q ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 008135          415 ELISLQQQSSEMAAKIEGKRKRIDALQFHINEMETQLNLLSKETQEITKRCAEEAKKMEEDIQTEA  480 (576)
Q Consensus       415 e~~~Lq~~l~~l~~~ieek~~~l~~Le~kl~~l~~ql~~lk~e~eee~~~~~~Ei~kl~eele~~~  480 (576)
                      .+..++.++..+...+.....++..|+.+...|+.++..+...+..+...+...+..++.++..++
T Consensus       210 ~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~~~~~~~~~i~~le~el~~l~  275 (312)
T PF00038_consen  210 ELESAKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLDEEREEYQAEIAELEEELAELR  275 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHHHHHHHHHHhhhccchhHHHHH
Confidence            344445555555555555555555555555555555555555555555555555555555555544

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=98.65  E-value=0.00051  Score=76.74  Aligned_cols=177  Identities=16%  Similarity=0.206  Sum_probs=82.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008135          257 IGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRRELQAVERDIADAENARNEWESK  336 (576)
Q Consensus       257 i~~l~~~~~~~e~~l~~l~~Ele~~~~e~~~l~~e~~eL~~~l~~Q~~s~~di~r~~~Er~~L~~~l~~~e~~~~~l~~~  336 (576)
                      .++++.-..++-.....++.+|...+.+.++++.-.++++..+++-.   +.|+-..-+++-.+...+.++..+..+.++
T Consensus       264 leqlqEfkSkim~qqa~Lqrel~raR~e~keaqe~ke~~k~emad~a---d~iEmaTldKEmAEERaesLQ~eve~lkEr  340 (1243)
T KOG0971|consen  264 LEQLQEFKSKIMEQQADLQRELKRARKEAKEAQEAKERYKEEMADTA---DAIEMATLDKEMAEERAESLQQEVEALKER  340 (1243)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444555556666666555555666555555555555432   223333333333333344445555555555


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcceeEeeCCCCCCCcccc-chhhhhchHHHHHHHHHHHHHHHHHHHHH
Q 008135          337 TWDLDSKLGRKFKELEALSMECNQAMKRLKLATEIQYSLNSNGSTPSEVM-GVDYKSTLKPALESFADDVKRSSVEKLEE  415 (576)
Q Consensus       337 ~~~~e~~l~~~~e~le~l~~~yn~~~~kl~l~~d~~~~ln~~~~~~~ei~-~~~~k~~ik~~L~~l~~ei~~~~~~~~~e  415 (576)
                      +.+++..+.=...+++..             |.|-      .+.+.-++. -..+...+|.+|.+|++-....-.    .
T Consensus       341 ~deletdlEILKaEmeek-------------G~~~------~~~ss~qfkqlEqqN~rLKdalVrLRDlsA~ek~----d  397 (1243)
T KOG0971|consen  341 VDELETDLEILKAEMEEK-------------GSDG------QAASSYQFKQLEQQNARLKDALVRLRDLSASEKQ----D  397 (1243)
T ss_pred             HHHHHHHHHHHHHHHHhc-------------CCCC------cccchHHHHHHHHHHHHHHHHHHHHHhcchHHHH----H
Confidence            555555444344444333             2111      001111111 233445677777777654432111    2


Q ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135          416 LISLQQQSSEMAAKIEGKRKRIDALQFHINEMETQLNLLSKETQ  459 (576)
Q Consensus       416 ~~~Lq~~l~~l~~~ieek~~~l~~Le~kl~~l~~ql~~lk~e~e  459 (576)
                      ..+++++++..+..+++.+..-..|..+++.+++.+..+++.++
T Consensus       398 ~qK~~kelE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQVD  441 (1243)
T KOG0971|consen  398 HQKLQKELEKKNSELEELRRQKERLSRELDQAESTIADLKEQVD  441 (1243)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            22444555555555555555555555555555555555555443

>TIGR00606 rad50 rad50

Probab=98.62  E-value=0.0004  Score=85.42  Aligned_cols=32  Identities=16%  Similarity=0.286  Sum_probs=17.7

Q ss_pred             HHHHHHHHHHHHHhHHH-HHHHHHHHHHHhccc
Q 008135          528 KYKERMESKISKMNKGI-SETALTVSEAYKNSL  559 (576)
Q Consensus       528 k~K~~i~~~i~~~~~~~-~~~~~~i~~~f~~~~  559 (576)
                      .-+..++..|..+..++ -..|..+.+.|+..+
T Consensus      1075 g~~k~le~qi~~l~~eL~e~~yk~a~~ryrka~ 1107 (1311)
T TIGR00606      1075 GRQKGYEKEIKHFKKELREPQFRDAEEKYREMM 1107 (1311)
T ss_pred             HHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHH
Confidence            44455555555555555 245666666666543

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]

Probab=98.61  E-value=0.00095  Score=82.24  Aligned_cols=122  Identities=13%  Similarity=0.238  Sum_probs=69.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HhHHHHHHHHH
Q 008135          405 VKRSSVEKLEELISLQQQSSEMAAKIEGKRKRIDALQFHINEMETQLNLLSKETQEITK----------RCAEEAKKMEE  474 (576)
Q Consensus       405 i~~~~~~~~~e~~~Lq~~l~~l~~~ieek~~~l~~Le~kl~~l~~ql~~lk~e~eee~~----------~~~~Ei~kl~e  474 (576)
                      .+..+..+...+..|+.++.++...++.-++..+.++.+.+.+...|+.+..++++...          ....++.++++
T Consensus      1088 e~~~~~~l~k~i~eL~~~i~el~e~le~er~~r~K~ek~r~dL~~ele~l~~~Lee~~~~t~~q~e~~~k~e~e~~~l~~ 1167 (1930)
T KOG0161|consen 1088 EQAEVAQLQKQIKELEARIKELEEELEAERASRAKAERQRRDLSEELEELKEELEEQGGTTAAQLELNKKREAEVQKLRR 1167 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence            34444555566666666677777777777777777777777777777777777766633          22235566666


Q ss_pred             HHHHHH----hhhhHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Q 008135          475 DIQTEA----HNLDMVEREAVEVLKASESKFQEAI---RQCEEEIQIRALDLFALVDSV  526 (576)
Q Consensus       475 ele~~~----~~~~~~~~ea~~el~~~~~~~ee~~---~e~eeek~~l~~el~~l~~~i  526 (576)
                      .++...    ..+..+...-...+..+..+++.+.   +.++.++..+..++..+...|
T Consensus      1168 ~leee~~~~e~~~~~lr~~~~~~~~el~~qle~l~~~k~~lekek~~lq~e~~~l~~ev 1226 (1930)
T KOG0161|consen 1168 DLEEETLDHEAQIEELRKKHADSLAELQEQLEQLQKDKAKLEKEKSDLQREIADLAAEL 1226 (1930)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            666543    1122222333344444444444432   355566666666666666444

>TIGR00606 rad50 rad50

Probab=98.57  E-value=0.0024  Score=78.77  Aligned_cols=20  Identities=5%  Similarity=0.129  Sum_probs=12.0

Q ss_pred             HHHHHHHHHHHhcccccccc
Q 008135          545 SETALTVSEAYKNSLPAQFS  564 (576)
Q Consensus       545 ~~~~~~i~~~f~~~~~~~~~  564 (576)
                      ...+.+||..-++++..-|+
T Consensus      1136 ~~~~~~~n~~~~~~w~~~~~ 1155 (1311)
T TIGR00606      1136 SMKMEEINKIIRDLWRSTYR 1155 (1311)
T ss_pred             HHHHHHHHHHHHHHHHHHcC
Confidence            34556666666666666554

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PRK02224 chromosome segregation protein; Provisional

Probab=98.57  E-value=0.0049  Score=73.17  Aligned_cols=17  Identities=29%  Similarity=0.411  Sum_probs=6.8

Q ss_pred             HHHHHHHHHHHHHHHHH
Q 008135          237 EKLEKEKCVLEEDLNKF  253 (576)
Q Consensus       237 ~~l~~~~~~L~~D~~K~  253 (576)
                      ..++..+..+..++..+
T Consensus       380 ~~~~~~l~~l~~el~el  396 (880)
T PRK02224        380 EDRREEIEELEEEIEEL  396 (880)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            33333444444444433

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=98.55  E-value=0.0026  Score=69.23  Aligned_cols=28  Identities=11%  Similarity=0.223  Sum_probs=17.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135          510 EEIQIRALDLFALVDSVSKYKERMESKI  537 (576)
Q Consensus       510 eek~~l~~el~~l~~~i~k~K~~i~~~i  537 (576)
                      .+|..+..+-++|++.|.....++...-
T Consensus       431 kEKEql~~EkQeL~~yi~~Le~r~~~~~  458 (546)
T PF07888_consen  431 KEKEQLQEEKQELLEYIERLEQRLDKVA  458 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            5666677777777777766655555443

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=98.55  E-value=0.0021  Score=78.23  Aligned_cols=75  Identities=11%  Similarity=0.019  Sum_probs=53.7

Q ss_pred             HHHHHHHHHHHHHcCCCCCCcCh--HhHHHHHHHh--cCCCCcccccccccCCCCCChHHHHHHHHHHHHHHHHhhhhhh
Q 008135           89 VKDITDVIKFLISQLDYPSTTKF--EEDLFVVLKS--LSCPFKINKSTLRSPNSPHNWPAYLALIHWLVQIASYNYHLTT  164 (576)
Q Consensus        89 ~k~f~~i~~~L~~~ld~~~~~k~--eeev~~~lk~--l~yP~~i~ks~l~~~g~~h~wp~~l~~L~WLv~l~~~~~~~~~  164 (576)
                      .+--..|...|+..+++.++.+.  ...++.+||.  +|++-+|+.+.+.+...... +...|+++.++++|.|++.+..
T Consensus       529 ~~y~~Aie~alG~~l~~vVV~~~~~a~~~i~~lk~~~~gr~tflpl~~i~~~~~~~~-~~~~g~~~~a~dli~~d~~~~~  607 (1163)
T COG1196         529 EKYETALEAALGNRLQAVVVENEEVAKKAIEFLKENKAGRATFLPLDRIKPLRSLKS-DAAPGFLGLASDLIDFDPKYEP  607 (1163)
T ss_pred             hHHHHHHHHHcccccCCeeeCChHHHHHHHHHHhhcCCCccccCchhhhcccccccc-ccccchhHHHHHHhcCCHHHHH
Confidence            34455678888889998886664  4489999996  78888888887754322111 1157888999999999976554

>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []

Probab=98.50  E-value=0.0049  Score=69.68  Aligned_cols=113  Identities=17%  Similarity=0.228  Sum_probs=71.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Q 008135          241 KEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGK-------KVEEHKRICEENEEFKKRVKLQTINARDVERMR  313 (576)
Q Consensus       241 ~~~~~L~~D~~K~~~~i~~l~~~~~~~e~~l~~l~~Ele~-------~~~e~~~l~~e~~eL~~~l~~Q~~s~~di~r~~  313 (576)
                      .......++.+.+......+......++.....|..|+..       .-.+...|+.|+-.|+++|..-.-|--+++-|+
T Consensus        48 ~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K~rE~rll~dyselEeENislQKqvs~Lk~sQvefE~~K  127 (717)
T PF09730_consen   48 QELSNVQAENERLSQLNQELRKECEDLELERKRLREEIKEYKFREARLLQDYSELEEENISLQKQVSVLKQSQVEFEGLK  127 (717)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence            3333444444444444444444444444444444444432       225566888999999999999988999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 008135          314 RELQAVERDIADAENARNEWESKTWDLDSKLGRKFKELEA  353 (576)
Q Consensus       314 ~Er~~L~~~l~~~e~~~~~l~~~~~~~e~~l~~~~e~le~  353 (576)
                      +|+..|..+++-+..+++++..-..-.+..+...++.|..
T Consensus       128 hei~rl~Ee~~~l~~qlee~~rLk~iae~qleEALesl~~  167 (717)
T PF09730_consen  128 HEIKRLEEEIELLNSQLEEAARLKEIAEKQLEEALESLKS  167 (717)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999888888877776666655444444444444444433

Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=98.48  E-value=0.01  Score=72.54  Aligned_cols=71  Identities=10%  Similarity=0.044  Sum_probs=45.8

Q ss_pred             HHHHHHHHHcCCCCCCcChHh--HHHHHHHh--cCCCCcccccccccCCCCCChHHHHHHHHHHHHHHHHhhhhh
Q 008135           93 TDVIKFLISQLDYPSTTKFEE--DLFVVLKS--LSCPFKINKSTLRSPNSPHNWPAYLALIHWLVQIASYNYHLT  163 (576)
Q Consensus        93 ~~i~~~L~~~ld~~~~~k~ee--ev~~~lk~--l~yP~~i~ks~l~~~g~~h~wp~~l~~L~WLv~l~~~~~~~~  163 (576)
                      ..|...|+..+++.++...++  .++.+||.  +|...+|+.+.+.+...+...|...|.++|+++++.|++.+.
T Consensus       539 ~Aie~~lg~~l~~ivv~~~~~a~~~i~~l~~~~~gr~tflpl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  613 (1164)
T TIGR02169       539 TAIEVAAGNRLNNVVVEDDAVAKEAIELLKRRKAGRATFLPLNKMRDERRDLSILSEDGVIGFAVDLVEFDPKYE  613 (1164)
T ss_pred             HHHHHHhhhhhCCEEECCHHHHHHHHHHHHhcCCCCeeeccHhhcCCCCCCcccccCCCchHHHHHHccCcHHHH
Confidence            456778888888888777666  89999996  565555555555321111112333577788889988876554

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]

Probab=98.47  E-value=0.00029  Score=76.53  Aligned_cols=73  Identities=26%  Similarity=0.284  Sum_probs=60.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhh
Q 008135          412 KLEELISLQQQSSEMAAKIEGKRKRIDALQFHINEMETQLNLLSKETQEITKRCAEEAKKMEEDIQTEAHNLD  484 (576)
Q Consensus       412 ~~~e~~~Lq~~l~~l~~~ieek~~~l~~Le~kl~~l~~ql~~lk~e~eee~~~~~~Ei~kl~eele~~~~~~~  484 (576)
                      ..+++..+...++.+...+.+.+..+..|..++..|..+++...+..+.....+.+++.+|++++..+-++++
T Consensus       294 ~rEEl~~~R~~i~~Lr~klselE~~n~~L~~~I~dL~~ql~e~~r~~e~~L~~kd~~i~~mReec~~l~~Elq  366 (546)
T KOG0977|consen  294 AREELRRIRSRISGLRAKLSELESRNSALEKRIEDLEYQLDEDQRSFEQALNDKDAEIAKMREECQQLSVELQ  366 (546)
T ss_pred             HHHHHHHHHhcccchhhhhccccccChhHHHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence            3477888888888888888888888888999999999888888888888888888888888888888654443

>PRK02224 chromosome segregation protein; Provisional

Probab=98.47  E-value=0.007  Score=71.89  Aligned_cols=13  Identities=31%  Similarity=0.307  Sum_probs=5.1

Q ss_pred             HHHHHHHHHHHHH
Q 008135          350 ELEALSMECNQAM  362 (576)
Q Consensus       350 ~le~l~~~yn~~~  362 (576)
                      .++..+..|...+
T Consensus       430 ~~~~~~~~~~~~l  442 (880)
T PRK02224        430 ELEATLRTARERV  442 (880)
T ss_pred             HHHHHHHHHHHHH
Confidence            3333334444333

>PRK04778 septation ring formation regulator EzrA; Provisional

Probab=98.46  E-value=0.0026  Score=71.58  Aligned_cols=37  Identities=14%  Similarity=0.362  Sum_probs=23.4

Q ss_pred             HhHHHHHHHHHHHHHHHhhhhHHHHHHHH-HHHHHHHHHHHHH
Q 008135          464 RCAEEAKKMEEDIQTEAHNLDMVEREAVE-VLKASESKFQEAI  505 (576)
Q Consensus       464 ~~~~Ei~kl~eele~~~~~~~~~~~ea~~-el~~~~~~~ee~~  505 (576)
                      .+..++..+..+++.-.+||.++     + +|..+..+++.+.
T Consensus       452 ~~~~~i~~l~~~L~~g~VNm~ai-----~~e~~e~~~~~~~L~  489 (569)
T PRK04778        452 EVSDEIEALAEELEEKPINMEAV-----NRLLEEATEDVETLE  489 (569)
T ss_pred             HHHHHHHHHHHHhccCCCCHHHH-----HHHHHHHHHHHHHHH
Confidence            44556666777776633777766     4 6666666666655

>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]

Probab=98.44  E-value=0.0038  Score=75.93  Aligned_cols=127  Identities=20%  Similarity=0.233  Sum_probs=63.9

Q ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 008135          419 LQQQSSEMAAKIEGKRKRIDALQFHINEMETQLNLLSKETQE-ITKRCAEEAKKMEEDIQTEAHNLDMVEREAVEVLKAS  497 (576)
Q Consensus       419 Lq~~l~~l~~~ieek~~~l~~Le~kl~~l~~ql~~lk~e~ee-e~~~~~~Ei~kl~eele~~~~~~~~~~~ea~~el~~~  497 (576)
                      +..++..+...+++....-++++.....+..++...+++.+. -......++..+.+.+...-+.........+..-+.|
T Consensus      1413 ~~~e~~sl~eeL~e~~q~~~~~~s~~e~i~~e~~~~~k~~~~~~~e~~~~~i~~~~e~~~~~~~~~~~~~~~le~~k~e~ 1492 (1822)
T KOG4674|consen 1413 LSEELESLKEELEELQQLQATLQSETEAITKELFEAKKEEEKSTTERLLEEIKKLLETVRKKTVDADSKSENLEGTKKEL 1492 (1822)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence            556777777777777677777777777777777777776665 3334444555555555443322222212222333344


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 008135          498 ESKFQEAIRQCEEEIQIRALDLFALVDSVSKYKERMESKISKMNKGISETALT  550 (576)
Q Consensus       498 ~~~~ee~~~e~eeek~~l~~el~~l~~~i~k~K~~i~~~i~~~~~~~~~~~~~  550 (576)
                      ..-++++.    ..+..+..+...+-.++.+-. .++..|.++...|-.++.+
T Consensus      1493 ~~e~e~~~----~~~~~~~~E~lk~r~Rl~~ee-q~~~~I~rl~~eLe~~~~~ 1540 (1822)
T KOG4674|consen 1493 ESEKEELK----QRLTELAAENLKLRSRLAKEE-QYQKEISRLKEELESTKEA 1540 (1822)
T ss_pred             hhhHHHHH----HHHHHHHHHHHHHHhhcchhH-HHHHHHHHHHHHHHHHHHH
Confidence            44444433    333333344444444443333 4444555444444444333

>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]

Probab=98.42  E-value=0.0032  Score=71.37  Aligned_cols=231  Identities=12%  Similarity=0.129  Sum_probs=112.1

Q ss_pred             HHHHHHHHhhhCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCCCCCcChHh---HHHHHHHh--cCCCCcccccccccCCC
Q 008135           64 AIRAINAHLSSHSFHIAFPLKQVPSVKDITDVIKFLISQLDYPSTTKFEE---DLFVVLKS--LSCPFKINKSTLRSPNS  138 (576)
Q Consensus        64 ~~~~i~~fL~~~~~~~~~k~l~~pt~k~f~~i~~~L~~~ld~~~~~k~ee---ev~~~lk~--l~yP~~i~ks~l~~~g~  138 (576)
                      .++.|++-+..+||-..+-.|.. -...|...+......--++++-.-++   -|+.-|..  +|...+++.+.|.++. 
T Consensus       511 ~v~~I~e~~k~ngv~G~v~eL~~-v~~~f~tavEvtaGNsLF~iVVdndevATkIl~~~n~m~~GrVTF~PLNrl~~r~-  588 (1200)
T KOG0964|consen  511 SVRKIKEELKPNGVFGTVYELIK-VPNKFKTAVEVTAGNSLFNIVVDNDEVATKILRKLNKMKGGRVTFMPLNRLKARD-  588 (1200)
T ss_pred             HHHHHHHHhcccccceehhhhhc-CCHHHHhHHhhhcccceEEEEecccHHHHHHHHHHHhccCCeeEEeecccCchhh-
Confidence            45666666655665322211110 01134444444443322332222233   45555554  3554444444443422 


Q ss_pred             CCChHHHHHHHHHHHHHHHHhhhhhhCCcc----cccchH--HHHHHHHHHHH---HHcCCC-CCchhhhHHHHHH----
Q 008135          139 PHNWPAYLALIHWLVQIASYNYHLTTNSKA----FVENNS--MYMYASDSYLN---YIEGKD-GDVDNIDKGFIEK----  204 (576)
Q Consensus       139 ~h~wp~~l~~L~WLv~l~~~~~~~~~~~~~----~~~~~~--~~~y~~~~Y~~---fl~g~d-~~~~~l~~~~~~k----  204 (576)
                       ..+|.-..++ -|+.-++|++.++....+    +.+...  -..++.+.|..   =|.|+. +--+.|.++|.++    
T Consensus       589 -v~yp~~sdai-Pli~kl~y~p~fdka~k~Vfgktivcrdl~qa~~~ak~~~ln~ITl~GDqvskkG~lTgGy~D~krsr  666 (1200)
T KOG0964|consen  589 -VEYPKDSDAI-PLISKLRYEPQFDKALKHVFGKTIVCRDLEQALRLAKKHELNCITLSGDQVSKKGVLTGGYEDQKRSR  666 (1200)
T ss_pred             -ccCCCCCCcc-chHHHhCcchhhHHHHHHHhCceEEeccHHHHHHHHHhcCCCeEEeccceecccCCccccchhhhhhH
Confidence             1344444443 456666777665543222    111111  22344444432   156665 2336788888754    


Q ss_pred             HH--HHHHhHHHHHHHHHHHHHHHHh-ccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135          205 LE--KEKENVSEYVEELKKKVSEMEG-AMTGPTEREKLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKK  281 (576)
Q Consensus       205 l~--~~~~~~~~~~~~L~~~~~~le~-l~~~~~~l~~l~~~~~~L~~D~~K~~~~i~~l~~~~~~~e~~l~~l~~Ele~~  281 (576)
                      |.  +.+.....++..|++.+.++.. +..-...++.+......++.|...|..-+..+...+.....+...++..++.+
T Consensus       667 Le~~k~~~~~~~~~~~l~~~L~~~r~~i~~~~~~i~q~~~~~qk~e~~~~~~~~~~~~l~~e~~~~k~e~~~v~~s~~~k  746 (1200)
T KOG0964|consen  667 LELLKNVNESRSELKELQESLDEVRNEIEDIDQKIDQLNNNMQKVENDRNAFKREHEKLKRELNTIKGEKSRVQESLEPK  746 (1200)
T ss_pred             HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHH
Confidence            22  2333344455666666665554 22222355566666666666666666666666666655556666666666666


Q ss_pred             HHHHHHHHHHHHHHHHH
Q 008135          282 VEEHKRICEENEEFKKR  298 (576)
Q Consensus       282 ~~e~~~l~~e~~eL~~~  298 (576)
                      ...++.+...+..+..+
T Consensus       747 ~~~Le~i~~~l~~~~~~  763 (1200)
T KOG0964|consen  747 GKELEEIKTSLHKLESQ  763 (1200)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            66666555555444443

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins

Probab=98.41  E-value=0.015  Score=71.10  Aligned_cols=35  Identities=17%  Similarity=0.291  Sum_probs=25.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 008135          281 KVEEHKRICEENEEFKKRVKLQTINARDVERMRRE  315 (576)
Q Consensus       281 ~~~e~~~l~~e~~eL~~~l~~Q~~s~~di~r~~~E  315 (576)
                      ...+...+..++.+++.++....++++..+.+..-
T Consensus       440 ~~~~~~~~~~~l~~l~~~~~~~~~~~e~~~~~~~~  474 (1201)
T PF12128_consen  440 LQEQREQLKSELAELKQQLKNPQYTEEEKEQLEQA  474 (1201)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCcCCCHHHHHHHHHH
Confidence            34555667777888888888888888877776633

>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]

Probab=98.32  E-value=0.0042  Score=71.32  Aligned_cols=71  Identities=14%  Similarity=0.002  Sum_probs=44.7

Q ss_pred             HHHHHHHHHHhhhCCCCCCC---CCCCCCCHHHHHHH-HHHHHHcCCCCCC--cChHhHHHHHHHhcCCCC--ccccccc
Q 008135           62 SSAIRAINAHLSSHSFHIAF---PLKQVPSVKDITDV-IKFLISQLDYPST--TKFEEDLFVVLKSLSCPF--KINKSTL  133 (576)
Q Consensus        62 ~~~~~~i~~fL~~~~~~~~~---k~l~~pt~k~f~~i-~~~L~~~ld~~~~--~k~eeev~~~lk~l~yP~--~i~ks~l  133 (576)
                      .+..+..++-|. .-||-..   -.|-.||.+-|-.. -..|+.+.|..++  .+.--+++.++|.-.+|-  +|+..++
T Consensus       487 ~~~~~eave~lK-r~fPgv~GrviDLc~pt~kkyeiAvt~~Lgk~~daIiVdte~ta~~CI~ylKeqr~~~~TFlPld~i  565 (1141)
T KOG0018|consen  487 RSRKQEAVEALK-RLFPGVYGRVIDLCQPTQKKYEIAVTVVLGKNMDAIIVDTEATARDCIQYLKEQRLEPMTFLPLDSI  565 (1141)
T ss_pred             HHHHHHHHHHHH-HhCCCccchhhhcccccHHHHHHHHHHHHhcccceEEeccHHHHHHHHHHHHHhccCCccccchhhh
Confidence            445566666662 3466433   23458997655444 5667778887663  444559999999977654  6666655

>PRK03918 chromosome segregation protein; Provisional

Probab=98.29  E-value=0.022  Score=67.69  Aligned_cols=9  Identities=11%  Similarity=0.593  Sum_probs=4.1

Q ss_pred             HHHHHHHHH
Q 008135          149 IHWLVQIAS  157 (576)
Q Consensus       149 L~WLv~l~~  157 (576)
                      -.|+..++.
T Consensus       114 ~~~i~~~~~  122 (880)
T PRK03918        114 REWVERLIP  122 (880)
T ss_pred             HHHHHHhcC
Confidence            345555443

>PRK11637 AmiB activator; Provisional

Probab=98.15  E-value=0.0064  Score=66.02  Aligned_cols=35  Identities=20%  Similarity=0.333  Sum_probs=13.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 008135          411 EKLEELISLQQQSSEMAAKIEGKRKRIDALQFHIN  445 (576)
Q Consensus       411 ~~~~e~~~Lq~~l~~l~~~ieek~~~l~~Le~kl~  445 (576)
                      .+.+++.....++......++....++..+...+.
T Consensus       170 ~~l~~l~~~~~~L~~~k~~le~~~~~l~~~~~e~~  204 (428)
T PRK11637        170 ETIAELKQTREELAAQKAELEEKQSQQKTLLYEQQ  204 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333433333333333333333333333

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []

Probab=98.12  E-value=0.037  Score=63.62  Aligned_cols=214  Identities=16%  Similarity=0.221  Sum_probs=112.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 008135          235 EREKLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRR  314 (576)
Q Consensus       235 ~l~~l~~~~~~L~~D~~K~~~~i~~l~~~~~~~e~~l~~l~~Ele~~~~e~~~l~~e~~eL~~~l~~Q~~s~~di~r~~~  314 (576)
                      +++++......+..++..++.-+...+.+...|+..+..+..+|+.+...+......+..++.          +..++..
T Consensus       309 ~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qe----------E~~~~~~  378 (775)
T PF10174_consen  309 RLETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQE----------EKSRLQG  378 (775)
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHH
Confidence            555566666666666777766666667777777777777777766666666666655555533          3444444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcceeEeeCCCCCCCccccchhhhhch
Q 008135          315 ELQAVERDIADAENARNEWESKTWDLDSKLGRKFKELEALSMECNQAMKRLKLATEIQYSLNSNGSTPSEVMGVDYKSTL  394 (576)
Q Consensus       315 Er~~L~~~l~~~e~~~~~l~~~~~~~e~~l~~~~e~le~l~~~yn~~~~kl~l~~d~~~~ln~~~~~~~ei~~~~~k~~i  394 (576)
                      |+..+...++..+..+..|+.++.+++-.+...-..+.....       +|.             +.|+..-.......+
T Consensus       379 Ei~~l~d~~d~~e~ki~~Lq~kie~Lee~l~ekd~ql~~~k~-------Rl~-------------~~~d~~~~~~~~~~l  438 (775)
T PF10174_consen  379 EIEDLRDMLDKKERKINVLQKKIENLEEQLREKDRQLDEEKE-------RLS-------------SQADSSNEDEALETL  438 (775)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHh-------------ccccccchHHHHHHH
Confidence            445555555555555555555544444444333333333321       111             012211222222333


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhHHHHHH
Q 008135          395 KPALESFADDVKRSSVEKLEELISLQQQSSEMAAKIEGKRKRIDALQFHINEMETQLNLLSKETQEITK---RCAEEAKK  471 (576)
Q Consensus       395 k~~L~~l~~ei~~~~~~~~~e~~~Lq~~l~~l~~~ieek~~~l~~Le~kl~~l~~ql~~lk~e~eee~~---~~~~Ei~k  471 (576)
                      ..++...-.-+...-......-....++++.....+.+.+..+..|+..+.+...++..++.++..-..   +..++++.
T Consensus       439 Eea~~eker~~e~l~e~r~~~e~e~~Eele~~~~e~~~lk~~~~~LQ~eLsEk~~~l~~~kee~s~l~s~~~K~~s~i~~  518 (775)
T PF10174_consen  439 EEALREKERLQERLEEQRERAEKERQEELETYQKELKELKAKLESLQKELSEKELQLEDAKEEASKLASSQEKKDSEIER  518 (775)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHhhccchhhhHHHH
Confidence            333332211111100001111234456777778888888888888888888888888888776654443   22234444


Q ss_pred             HHHHHHH
Q 008135          472 MEEDIQT  478 (576)
Q Consensus       472 l~eele~  478 (576)
                      +.-.++.
T Consensus       519 l~I~lEk  525 (775)
T PF10174_consen  519 LEIELEK  525 (775)
T ss_pred             HHHHHHH
Confidence            4444443

Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].

>PRK03918 chromosome segregation protein; Provisional

Probab=98.11  E-value=0.048  Score=64.76  Aligned_cols=12  Identities=33%  Similarity=0.271  Sum_probs=5.2

Q ss_pred             CCCCCCCCCCCC
Q 008135           22 GGNRFGGSRDSD   33 (576)
Q Consensus        22 ~~~~~~~~r~s~   33 (576)
                      |.+..+|+..||
T Consensus        24 g~~~i~G~nG~G   35 (880)
T PRK03918         24 GINLIIGQNGSG   35 (880)
T ss_pred             CcEEEEcCCCCC
Confidence            333444444444

>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]

Probab=98.11  E-value=0.01  Score=68.60  Aligned_cols=74  Identities=14%  Similarity=0.229  Sum_probs=29.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135          259 ELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRRELQAVERDIADAENARNEWES  335 (576)
Q Consensus       259 ~l~~~~~~~e~~l~~l~~Ele~~~~e~~~l~~e~~eL~~~l~~Q~~s~~di~r~~~Er~~L~~~l~~~e~~~~~l~~  335 (576)
                      .+...+...+.++..+++.++.....++.+.....+.+.+++.-   .++++.+..|++.+..+++.+.....+++.
T Consensus       285 ~~~~~i~~~qek~~~l~~ki~~~~~k~~~~r~k~teiea~i~~~---~~e~~~~d~Ei~~~r~~~~~~~re~~~~~~  358 (1074)
T KOG0250|consen  285 NQEEEIKKKQEKVDTLQEKIEEKQGKIEEARQKLTEIEAKIGEL---KDEVDAQDEEIEEARKDLDDLRREVNDLKE  358 (1074)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH---HHhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            33334444444444444444444433443333333333333322   223334444444444444444443333333

>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]

Probab=98.07  E-value=0.042  Score=62.67  Aligned_cols=26  Identities=23%  Similarity=0.338  Sum_probs=16.9

Q ss_pred             CCCCcChH--hHHHHHHHhcCC----CCcccc
Q 008135          105 YPSTTKFE--EDLFVVLKSLSC----PFKINK  130 (576)
Q Consensus       105 ~~~~~k~e--eev~~~lk~l~y----P~~i~k  130 (576)
                      |.+.++..  .||+.+|-.-|+    ||.|.+
T Consensus       109 Y~lD~k~Vtk~evvnLLESAGFSrsNPYyIV~  140 (1200)
T KOG0964|consen  109 YFLDNKMVTKGEVVNLLESAGFSRSNPYYIVP  140 (1200)
T ss_pred             hhcccccccHHHHHHHHHhcCcccCCCceEee
Confidence            44444443  489999999775    775543

>PHA02562 46 endonuclease subunit; Provisional

Probab=98.05  E-value=0.018  Score=64.71  Aligned_cols=15  Identities=13%  Similarity=0.284  Sum_probs=8.2

Q ss_pred             HHHHHHHHHHHHHHH
Q 008135          491 VEVLKASESKFQEAI  505 (576)
Q Consensus       491 ~~el~~~~~~~ee~~  505 (576)
                      +.++..+..++.++.
T Consensus       378 ~~~l~~l~~~l~~~~  392 (562)
T PHA02562        378 AEELAKLQDELDKIV  392 (562)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            345555555555554

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=98.00  E-value=0.028  Score=58.27  Aligned_cols=25  Identities=20%  Similarity=0.218  Sum_probs=16.1

Q ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHh
Q 008135          204 KLEKEKENVSEYVEELKKKVSEMEG  228 (576)
Q Consensus       204 kl~~~~~~~~~~~~~L~~~~~~le~  228 (576)
                      .|+..++++.+.+..|+.+...|+.
T Consensus         8 ~LNdRla~YIekVr~LE~~N~~Le~   32 (312)
T PF00038_consen    8 SLNDRLASYIEKVRFLEQENKRLES   32 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhHH
Confidence            4556666666677777766666664

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>PRK04863 mukB cell division protein MukB; Provisional

Probab=97.95  E-value=0.016  Score=71.31  Aligned_cols=49  Identities=12%  Similarity=0.049  Sum_probs=29.0

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Q 008135          318 AVERDIADAENARNEWESKTWDLDSKLGRKFKELEALSMECNQAMKRLK  366 (576)
Q Consensus       318 ~L~~~l~~~e~~~~~l~~~~~~~e~~l~~~~e~le~l~~~yn~~~~kl~  366 (576)
                      .|...++.......++..+..+++..+......++.+-..|+.++.-.|
T Consensus       439 eLe~~LenF~aklee~e~qL~elE~kL~~lea~leql~~~~~~l~~~~G  487 (1486)
T PRK04863        439 NAEDWLEEFQAKEQEATEELLSLEQKLSVAQAAHSQFEQAYQLVRKIAG  487 (1486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            3444445555556666666666666666666666666666666655433

>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.94  E-value=0.06  Score=59.95  Aligned_cols=49  Identities=8%  Similarity=0.142  Sum_probs=27.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 008135          306 ARDVERMRRELQAVERDIADAENARNEWESKTWDLDSKLGRKFKELEAL  354 (576)
Q Consensus       306 ~~di~r~~~Er~~L~~~l~~~e~~~~~l~~~~~~~e~~l~~~~e~le~l  354 (576)
                      .++|-.+|.....|...++.+..++.+|..++.|....+++...+++.+
T Consensus       429 qe~iv~~nak~~ql~~eletLn~k~qqls~kl~Dvr~~~tt~kt~ie~~  477 (1118)
T KOG1029|consen  429 QEWIVYLNAKKKQLQQELETLNFKLQQLSGKLQDVRVDITTQKTEIEEV  477 (1118)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhheeccchHHHHHHHh
Confidence            3444445555555555566666666666666666665555555555544

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=97.93  E-value=0.057  Score=59.13  Aligned_cols=38  Identities=13%  Similarity=0.112  Sum_probs=22.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHH---HHHHHHHHHHHHh
Q 008135          519 LFALVDSVSKYKERMESKISKMNKG---ISETALTVSEAYK  556 (576)
Q Consensus       519 l~~l~~~i~k~K~~i~~~i~~~~~~---~~~~~~~i~~~f~  556 (576)
                      +...+..+.+-|+.++.+-.++..+   |-..+..+++.+.
T Consensus       422 lks~lrv~qkEKEql~~EkQeL~~yi~~Le~r~~~~~~~~~  462 (546)
T PF07888_consen  422 LKSSLRVAQKEKEQLQEEKQELLEYIERLEQRLDKVADEKW  462 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence            4444455566677777766665544   5556666666554

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=97.89  E-value=0.09  Score=60.37  Aligned_cols=106  Identities=17%  Similarity=0.255  Sum_probs=54.9

Q ss_pred             HHHHHHHHHHHHhhhhhhCCc-----ccc------cchHHHHHHHHHHHHHHcCCC-CCchhhhHHHHH-------HHHH
Q 008135          147 ALIHWLVQIASYNYHLTTNSK-----AFV------ENNSMYMYASDSYLNYIEGKD-GDVDNIDKGFIE-------KLEK  207 (576)
Q Consensus       147 ~~L~WLv~l~~~~~~~~~~~~-----~~~------~~~~~~~y~~~~Y~~fl~g~d-~~~~~l~~~~~~-------kl~~  207 (576)
                      +-..|+++||.|++.+...-.     .|+      .-.+.|+.-+.|=..=+.||. |..+.|.++...       +|. 
T Consensus       599 ~~v~~al~Li~yd~~l~~amefvFG~tlVc~~~d~AKkVaf~~~i~~rsVTl~GDV~dP~GtlTGGs~~~~a~~L~~l~-  677 (1174)
T KOG0933|consen  599 DNVELALSLIGYDDELKKAMEFVFGSTLVCDSLDVAKKVAFDPKIRTRSVTLEGDVYDPSGTLTGGSRSKGADLLRQLQ-  677 (1174)
T ss_pred             chHHHHHHHhcCCHHHHHHHHHHhCceEEecCHHHHHHhhcccccccceeeecCceeCCCCcccCCCCCCcccHHHHHH-
Confidence            445899999999988765321     111      123456666666445577876 455566655431       111 


Q ss_pred             HHHhHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135          208 EKENVSEYVEELKKKVSEMEGAMTGPTEREKLEKEKCVLEEDLNKFNAIIGELNMRKEK  266 (576)
Q Consensus       208 ~~~~~~~~~~~L~~~~~~le~l~~~~~~l~~l~~~~~~L~~D~~K~~~~i~~l~~~~~~  266 (576)
                      .+....-+++..+.             .++.++.+++.|+.--.||..+-.+++-+..+
T Consensus       678 ~l~~~~~~~~~~q~-------------el~~le~eL~~le~~~~kf~~l~~ql~l~~~~  723 (1174)
T KOG0933|consen  678 KLKQAQKELRAIQK-------------ELEALERELKSLEAQSQKFRDLKQQLELKLHE  723 (1174)
T ss_pred             HHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            11111122222222             33444455555666666666666665554443

>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD

Probab=97.89  E-value=0.09  Score=60.28  Aligned_cols=61  Identities=20%  Similarity=0.285  Sum_probs=35.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH--HHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135          398 LESFADDVKRSSVEKLEELISLQQQSSEMAAKIEGK--RKRIDALQFHINEMETQLNLLSKET  458 (576)
Q Consensus       398 L~~l~~ei~~~~~~~~~e~~~Lq~~l~~l~~~ieek--~~~l~~Le~kl~~l~~ql~~lk~e~  458 (576)
                      +..+.......+..+.+++..++.+++.+...+...  ...+..+..++..++..+..+..++
T Consensus       382 ~~~~~~~~~~~~~~~~~~~~~~e~el~~l~~~l~~~~~~e~i~~l~e~l~~l~~~l~~~~~~~  444 (650)
T TIGR03185       382 IQQVKRELQDAKSQLLKELRELEEELAEVDKKISTIPSEEQIAQLLEELGEAQNELFRSEAEI  444 (650)
T ss_pred             HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333334455666667777777777777777642  3455666666665555555554433

This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.

>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=97.86  E-value=0.094  Score=59.43  Aligned_cols=53  Identities=11%  Similarity=0.267  Sum_probs=24.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 008135          252 KFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTI  304 (576)
Q Consensus       252 K~~~~i~~l~~~~~~~e~~l~~l~~Ele~~~~e~~~l~~e~~eL~~~l~~Q~~  304 (576)
                      ..+.+...+..++..++++|..-..|.+....-.++...+..++...|+--.+
T Consensus       266 qlqEfkSkim~qqa~Lqrel~raR~e~keaqe~ke~~k~emad~ad~iEmaTl  318 (1243)
T KOG0971|consen  266 QLQEFKSKIMEQQADLQRELKRARKEAKEAQEAKERYKEEMADTADAIEMATL  318 (1243)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            33344444444455555555555444444333334444444555554444443

>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]

Probab=97.69  E-value=0.2  Score=58.39  Aligned_cols=17  Identities=0%  Similarity=0.032  Sum_probs=12.3

Q ss_pred             HHHHHHHHHHHHHHhcc
Q 008135          542 KGISETALTVSEAYKNS  558 (576)
Q Consensus       542 ~~~~~~~~~i~~~f~~~  558 (576)
                      ..+-+.+.+|...|...
T Consensus       475 ~~m~~lL~~I~r~~~~f  491 (1074)
T KOG0250|consen  475 PNMPQLLRAIERRKRRF  491 (1074)
T ss_pred             hhhHHHHHHHHHHHhcC
Confidence            34778888888887654

>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]

Probab=97.68  E-value=0.3  Score=60.23  Aligned_cols=37  Identities=16%  Similarity=0.207  Sum_probs=23.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135          490 AVEVLKASESKFQEAIRQCEEEIQIRALDLFALVDSV  526 (576)
Q Consensus       490 a~~el~~~~~~~ee~~~e~eeek~~l~~el~~l~~~i  526 (576)
                      ..+-+..+...|++....++.....++.++..+...+
T Consensus       938 ~eqsl~~~ks~lde~~~~~ea~ie~~~~k~tslE~~l  974 (1822)
T KOG4674|consen  938 LEQSLESVKSELDETRLELEAKIESLHKKITSLEEEL  974 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence            4445666777777766666666666666655555444

>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]

Probab=97.68  E-value=0.14  Score=56.25  Aligned_cols=92  Identities=16%  Similarity=0.100  Sum_probs=51.2

Q ss_pred             HHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH-
Q 008135          468 EAKKMEEDIQTEAHN---LDMVEREAVEVLKASESKFQEAIRQCEEEIQIRALDLFALVDSVSKYKERMESKISKMNKG-  543 (576)
Q Consensus       468 Ei~kl~eele~~~~~---~~~~~~ea~~el~~~~~~~ee~~~e~eeek~~l~~el~~l~~~i~k~K~~i~~~i~~~~~~-  543 (576)
                      .....++++......   +....++.+..-..+..+.+++.-++++.++.-...|......|.+.++.++.-+.++..- 
T Consensus       290 ~~~~~rEEl~~~R~~i~~Lr~klselE~~n~~L~~~I~dL~~ql~e~~r~~e~~L~~kd~~i~~mReec~~l~~Elq~Ll  369 (546)
T KOG0977|consen  290 EQNYAREELRRIRSRISGLRAKLSELESRNSALEKRIEDLEYQLDEDQRSFEQALNDKDAEIAKMREECQQLSVELQKLL  369 (546)
T ss_pred             hhHHHHHHHHHHHhcccchhhhhccccccChhHHHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhh
Confidence            333344555554322   2222233333344555666666666666777777777777777777777777766665533 


Q ss_pred             -HHHHHHHHHHHHhccc
Q 008135          544 -ISETALTVSEAYKNSL  559 (576)
Q Consensus       544 -~~~~~~~i~~~f~~~~  559 (576)
                       .--+++.=-..|+..+
T Consensus       370 D~ki~Ld~EI~~YRkLL  386 (546)
T KOG0977|consen  370 DTKISLDAEIAAYRKLL  386 (546)
T ss_pred             chHhHHHhHHHHHHHHh
Confidence             4455555555666554

>PRK11637 AmiB activator; Provisional

Probab=97.61  E-value=0.16  Score=55.17  Aligned_cols=29  Identities=14%  Similarity=0.177  Sum_probs=11.0

Q ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 008135          417 ISLQQQSSEMAAKIEGKRKRIDALQFHIN  445 (576)
Q Consensus       417 ~~Lq~~l~~l~~~ieek~~~l~~Le~kl~  445 (576)
                      ..++.+..++...+.+.+.+...|+....
T Consensus       187 ~~le~~~~~l~~~~~e~~~~k~~L~~~k~  215 (428)
T PRK11637        187 AELEEKQSQQKTLLYEQQAQQQKLEQARN  215 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333333333333333333333

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=97.57  E-value=0.1  Score=51.90  Aligned_cols=38  Identities=26%  Similarity=0.272  Sum_probs=22.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135          492 EVLKASESKFQEAIRQCEEEIQIRALDLFALVDSVSKYKERM  533 (576)
Q Consensus       492 ~el~~~~~~~ee~~~e~eeek~~l~~el~~l~~~i~k~K~~i  533 (576)
                      ..|+.++.+++.+.    .....|...+..+.+.+...|.+.
T Consensus       183 ~~lkeaE~Rae~aE----~~v~~Le~~id~le~eL~~~k~~~  220 (237)
T PF00261_consen  183 EKLKEAENRAEFAE----RRVKKLEKEIDRLEDELEKEKEKY  220 (237)
T ss_dssp             HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45555566666655    455666666666666666555443

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....

>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]

Probab=97.54  E-value=0.25  Score=55.42  Aligned_cols=42  Identities=19%  Similarity=0.132  Sum_probs=18.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135          236 REKLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKERE  277 (576)
Q Consensus       236 l~~l~~~~~~L~~D~~K~~~~i~~l~~~~~~~e~~l~~l~~E  277 (576)
                      +-.|+.++..++..++++++-+..++....+.+.+|.++..+
T Consensus       108 iriLQn~c~~lE~ekq~lQ~ti~~~q~d~ke~etelE~~~sr  149 (1265)
T KOG0976|consen  108 IRILQNKCLRLEMEKQKLQDTIQGAQDDKKENEIEIENLNSR  149 (1265)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence            334444444444455555555444444444444444433333

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]

Probab=97.51  E-value=0.37  Score=56.70  Aligned_cols=12  Identities=0%  Similarity=-0.186  Sum_probs=6.7

Q ss_pred             HHHHHHHHHHHH
Q 008135          175 MYMYASDSYLNY  186 (576)
Q Consensus       175 ~~~y~~~~Y~~f  186 (576)
                      |.+|...++..+
T Consensus       397 FIGfTy~~~~~~  408 (1317)
T KOG0612|consen  397 FIGFTYTHESLL  408 (1317)
T ss_pred             eeeeeeccchhh
Confidence            666665554444

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=97.48  E-value=0.17  Score=52.83  Aligned_cols=129  Identities=17%  Similarity=0.271  Sum_probs=64.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhcCCHH----HH
Q 008135          235 EREKLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRI-CEENEEFKKRVKLQTINAR----DV  309 (576)
Q Consensus       235 ~l~~l~~~~~~L~~D~~K~~~~i~~l~~~~~~~e~~l~~l~~Ele~~~~e~~~l-~~e~~eL~~~l~~Q~~s~~----di  309 (576)
                      .+..|+...+.|..++..+..++..+..+...+..++..++.-...    +..+ ..+++.++..+..+....+    ++
T Consensus       157 ~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~e----~~~~D~~eL~~lr~eL~~~~~~i~~~k~~l  232 (325)
T PF08317_consen  157 NLELLQEDYAKLDKQLEQLDELLPKLRERKAELEEELENLKQLVEE----IESCDQEELEALRQELAEQKEEIEAKKKEL  232 (325)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----hhhcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444555555555555555555555555555555555544332221    1111 1333444444444443333    55


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH----HHHHHHHHHHHHHHHHHHccC
Q 008135          310 ERMRRELQAVERDIADAENARNEWESKTWDLDSKLGR----KFKELEALSMECNQAMKRLKL  367 (576)
Q Consensus       310 ~r~~~Er~~L~~~l~~~e~~~~~l~~~~~~~e~~l~~----~~e~le~l~~~yn~~~~kl~l  367 (576)
                      .+++.++..+...++++...+.++...+.+.+.....    ...++..+-..|+.+-...|.
T Consensus       233 ~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~~~~r~~t~~Ev~~Lk~~~~~Le~~~gw  294 (325)
T PF08317_consen  233 AELQEELEELEEKIEELEEQKQELLAEIAEAEKIREECRGWTRSEVKRLKAKVDALEKLTGW  294 (325)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHCc
Confidence            5566666666666666666666666655555543221    224566666666666555554

>PRK01156 chromosome segregation protein; Provisional

Probab=97.41  E-value=0.52  Score=56.22  Aligned_cols=35  Identities=6%  Similarity=0.228  Sum_probs=17.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135          266 KMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVK  300 (576)
Q Consensus       266 ~~e~~l~~l~~Ele~~~~e~~~l~~e~~eL~~~l~  300 (576)
                      ++..++.++..++.....++..+...+.+|.....
T Consensus       413 e~~~~~~~l~~~i~~l~~~i~~l~~~~~el~~~~~  447 (895)
T PRK01156        413 EINVKLQDISSKVSSLNQRIRALRENLDELSRNME  447 (895)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344444444455555555555555555554444

>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin

Probab=97.34  E-value=0.045  Score=54.82  Aligned_cols=37  Identities=24%  Similarity=0.501  Sum_probs=30.9

Q ss_pred             HhcCCCCcccccccccCCCCCChHHHHHHHHHHHHHHHHhh
Q 008135          120 KSLSCPFKINKSTLRSPNSPHNWPAYLALIHWLVQIASYNY  160 (576)
Q Consensus       120 k~l~yP~~i~ks~l~~~g~~h~wp~~l~~L~WLv~l~~~~~  160 (576)
                      +.||||=.||-..+.+|    +||-+--+|.|||....-..
T Consensus         1 R~LGypr~iSmenFrtP----NF~LVAeiL~WLv~rydP~~   37 (267)
T PF10234_consen    1 RALGYPRLISMENFRTP----NFELVAEILRWLVKRYDPDA   37 (267)
T ss_pred             CCCCCCCCCcHHHcCCC----ChHHHHHHHHHHHHHcCCCC
Confidence            46999999999999775    89999999999997664443

Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].

>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]

Probab=97.30  E-value=0.56  Score=54.13  Aligned_cols=50  Identities=14%  Similarity=0.131  Sum_probs=33.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135          411 EKLEELISLQQQSSEMAAKIEGKRKRIDALQFHINEMETQLNLLSKETQE  460 (576)
Q Consensus       411 ~~~~e~~~Lq~~l~~l~~~ieek~~~l~~Le~kl~~l~~ql~~lk~e~ee  460 (576)
                      ++..+...+..++..++..+.+...+++.+.+...++..||......++.
T Consensus       478 Q~~~et~el~~~iknlnk~L~~r~~elsrl~a~~~elkeQ~kt~~~qye~  527 (1195)
T KOG4643|consen  478 QLEAETEELLNQIKNLNKSLNNRDLELSRLHALKNELKEQYKTCDIQYEL  527 (1195)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445556666677777777777777777777777777777666555443

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []

Probab=97.28  E-value=0.6  Score=53.96  Aligned_cols=50  Identities=20%  Similarity=0.260  Sum_probs=28.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH
Q 008135          257 IGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINA  306 (576)
Q Consensus       257 i~~l~~~~~~~e~~l~~l~~Ele~~~~e~~~l~~e~~eL~~~l~~Q~~s~  306 (576)
                      .+.+...+..+...+.+++..++.....+.....++..|...|...|.++
T Consensus       123 ~er~~~El~~lr~~lE~~q~~~e~~q~~l~~~~eei~kL~e~L~~~g~~~  172 (775)
T PF10174_consen  123 RERLQRELERLRKTLEELQLRIETQQQTLDKADEEIEKLQEMLQSKGLSA  172 (775)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcc
Confidence            33333444444444555555555555555566677777777777777764

Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].

>PRK09039 hypothetical protein; Validated

Probab=97.24  E-value=0.29  Score=51.48  Aligned_cols=23  Identities=13%  Similarity=0.459  Sum_probs=17.6

Q ss_pred             CCCChHHHHHHHHHHHHHHHHhh
Q 008135          138 SPHNWPAYLALIHWLVQIASYNY  160 (576)
Q Consensus       138 ~~h~wp~~l~~L~WLv~l~~~~~  160 (576)
                      +.+.||.++.+|+=|.-++.|.-
T Consensus        12 ~~~~wpg~vd~~~~ll~~~~f~l   34 (343)
T PRK09039         12 GVDYWPGFVDALSTLLLVIMFLL   34 (343)
T ss_pred             CCCCCchHHHHHHHHHHHHHHHH
Confidence            34679999999988887776653

>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms

Probab=97.22  E-value=0.21  Score=52.57  Aligned_cols=70  Identities=19%  Similarity=0.250  Sum_probs=54.9

Q ss_pred             CCCCH--HHHHHHHHHHHHcCCCCC--CcChHh------HHHHHHHhcCCCCcccccccccCCCCCChHHHHHHHHHHHH
Q 008135           85 QVPSV--KDITDVIKFLISQLDYPS--TTKFEE------DLFVVLKSLSCPFKINKSTLRSPNSPHNWPAYLALIHWLVQ  154 (576)
Q Consensus        85 ~~pt~--k~f~~i~~~L~~~ld~~~--~~k~ee------ev~~~lk~l~yP~~i~ks~l~~~g~~h~wp~~l~~L~WLv~  154 (576)
                      .+|..  -.|..+..||....+..|  ...+++      .|+..||.+|.|..++-+.|.+ |..   +++..+|.-|++
T Consensus        36 ~Np~eQF~~F~~L~~WL~~~~g~~f~~p~e~DDPn~~~~~Il~~lr~~g~~~df~p~kLk~-G~G---e~vc~VLd~Lad  111 (359)
T PF10498_consen   36 TNPGEQFYYFTSLCAWLISKAGRKFEQPQEYDDPNATISNILDELRKLGVPVDFPPSKLKQ-GSG---EHVCYVLDQLAD  111 (359)
T ss_pred             CCchHHHHHHHHHHHHHHHhcCCCCCCCcccCCHHHHHHHHHHHHHccCCCCCCChHHhhC-CCC---HHHHHHHHHHHH
Confidence            36663  499999999999888655  455555      6788889999999999999977 432   489999999998


Q ss_pred             HHHH
Q 008135          155 IASY  158 (576)
Q Consensus       155 l~~~  158 (576)
                      .+-.
T Consensus       112 ~AL~  115 (359)
T PF10498_consen  112 EALK  115 (359)
T ss_pred             HHHH
Confidence            7644

Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.

>PRK04778 septation ring formation regulator EzrA; Provisional

Probab=97.22  E-value=0.59  Score=52.74  Aligned_cols=21  Identities=14%  Similarity=0.227  Sum_probs=15.5

Q ss_pred             HHHHHHHHHHHHhc---cccccccc
Q 008135          544 ISETALTVSEAYKN---SLPAQFSI  565 (576)
Q Consensus       544 ~~~~~~~i~~~f~~---~~~~~~~~  565 (576)
                      |..++..|+.+|..   .| +.|-|
T Consensus       512 fr~~~~~V~~~f~~Ae~lF-~~~~Y  535 (569)
T PRK04778        512 YRSDNEEVAEALNEAERLF-REYDY  535 (569)
T ss_pred             cCCCCHHHHHHHHHHHHHH-HhCCh
Confidence            88888999988875   45 55555

>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]

Probab=97.21  E-value=0.41  Score=50.74  Aligned_cols=155  Identities=10%  Similarity=0.100  Sum_probs=95.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 008135          394 LKPALESFADDVKRSSVEKLEELISLQQQSSEMAAKIEGKRKRIDALQFHINEMETQLNLLSKETQEITKRCAEEAKKME  473 (576)
Q Consensus       394 ik~~L~~l~~ei~~~~~~~~~e~~~Lq~~l~~l~~~ieek~~~l~~Le~kl~~l~~ql~~lk~e~eee~~~~~~Ei~kl~  473 (576)
                      ++..+..+..++.+.+..   ....-++..-.+...+.+++..++.|+..+..++.++-..-............+....+
T Consensus       456 ~~~~I~~~i~eln~~i~~---~~~~e~nksi~Lee~i~~~~~~i~El~~~l~~~e~~L~~a~s~~~~~ke~~e~e~~a~~  532 (622)
T COG5185         456 INESIKKSILELNDEIQE---RIKTEENKSITLEEDIKNLKHDINELTQILEKLELELSEANSKFELSKEENERELVAQR  532 (622)
T ss_pred             chHhHHHHHHHHhHHHHH---HHHHHhccceeHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence            444444555555443332   22333444445677778888888888888888888888877777666656666777777


Q ss_pred             HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhHHHHHHHHH
Q 008135          474 EDIQTEAHNLDMVEREAVEVLKASESKFQEAIRQCEEEIQIRALDLFALVDSVS---KYKERMESKISKMNKGISETALT  550 (576)
Q Consensus       474 eele~~~~~~~~~~~ea~~el~~~~~~~ee~~~e~eeek~~l~~el~~l~~~i~---k~K~~i~~~i~~~~~~~~~~~~~  550 (576)
                      .+++.++..++.+.-...+-+-.++++++.+.+.+++-+..|......+-..|.   ..-.++.-.|++.-+|+-..+..
T Consensus       533 ~E~eklE~el~~lnL~s~ts~l~~eq~vqs~~i~ld~~~~~~n~~r~~i~k~V~~v~~~~~~fk~~IQssledl~~~l~k  612 (622)
T COG5185         533 IEIEKLEKELNDLNLLSKTSILDAEQLVQSTEIKLDELKVDLNRKRYKIHKQVIHVIDITSKFKINIQSSLEDLENELGK  612 (622)
T ss_pred             HHHHHHHHHHHHhhhhccchHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHhhHHHHHHHHHH
Confidence            777777766665555566667777888888777777777766666555443332   22334444444444444444443


Q ss_pred             H
Q 008135          551 V  551 (576)
Q Consensus       551 i  551 (576)
                      +
T Consensus       613 ~  613 (622)
T COG5185         613 V  613 (622)
T ss_pred             H
Confidence            3

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins

Probab=97.15  E-value=1.2  Score=54.92  Aligned_cols=14  Identities=7%  Similarity=-0.031  Sum_probs=9.3

Q ss_pred             HHHHHHHHHHHHHc
Q 008135          175 MYMYASDSYLNYIE  188 (576)
Q Consensus       175 ~~~y~~~~Y~~fl~  188 (576)
                      -++-+..-|..|-.
T Consensus       328 ~L~~i~~~~~~ye~  341 (1201)
T PF12128_consen  328 ELDEIEQQKKDYED  341 (1201)
T ss_pred             HHHHHHHHHHHHHH
Confidence            34566778888844

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

Probab=97.11  E-value=0.25  Score=48.72  Aligned_cols=65  Identities=6%  Similarity=0.068  Sum_probs=42.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh
Q 008135          492 EVLKASESKFQEAIRQCEEEIQIRALDLFALVDSVSKYKERMESKISKMNKGISETALTVSEAYK  556 (576)
Q Consensus       492 ~el~~~~~~~ee~~~e~eeek~~l~~el~~l~~~i~k~K~~i~~~i~~~~~~~~~~~~~i~~~f~  556 (576)
                      .++..++.++......+.+.+..+..++..+-+....+..+...-.+.++.+++.-|..|-.++|
T Consensus       124 ~~i~~l~~~~~~~e~~~~e~~~~~e~e~~~i~e~~~~~~~~~~~L~~~l~~ell~~yeri~~~~k  188 (239)
T COG1579         124 KEIEDLKERLERLEKNLAEAEARLEEEVAEIREEGQELSSKREELKEKLDPELLSEYERIRKNKK  188 (239)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCC
Confidence            34444445555555555566666666666666666667777777777788888888888877754

>PHA02562 46 endonuclease subunit; Provisional

Probab=97.07  E-value=0.79  Score=51.52  Aligned_cols=63  Identities=21%  Similarity=0.263  Sum_probs=32.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 008135          238 KLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQT  303 (576)
Q Consensus       238 ~l~~~~~~L~~D~~K~~~~i~~l~~~~~~~e~~l~~l~~Ele~~~~e~~~l~~e~~eL~~~l~~Q~  303 (576)
                      .++.++..+...+..++.++..+....   ...+..++++++....+...++.++..|+..+.+-+
T Consensus       185 ~l~~~i~~l~~~i~~~~~~i~~~~~~~---~~~i~~l~~e~~~l~~~~~~l~~~l~~l~~~i~~l~  247 (562)
T PHA02562        185 TLDMKIDHIQQQIKTYNKNIEEQRKKN---GENIARKQNKYDELVEEAKTIKAEIEELTDELLNLV  247 (562)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            333444444555555555555544322   234555556666555566666666666655554443

>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]

Probab=97.04  E-value=0.77  Score=50.89  Aligned_cols=107  Identities=14%  Similarity=0.104  Sum_probs=56.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----CCHHHHH
Q 008135          235 EREKLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQT----INARDVE  310 (576)
Q Consensus       235 ~l~~l~~~~~~L~~D~~K~~~~i~~l~~~~~~~e~~l~~l~~Ele~~~~e~~~l~~e~~eL~~~l~~Q~----~s~~di~  310 (576)
                      .+....+.+..|.+.=+|+-.-+-....-|.++..++.+-+.=++.+...+..|+.|...|+..++...    .-.+-|.
T Consensus       447 eLaEkdE~I~~lm~EGEkLSK~ql~qs~iIkKLRAk~ke~etl~~K~ge~i~~L~sE~~~lk~il~~Kee~Ek~~~E~I~  526 (961)
T KOG4673|consen  447 ELAEKDEIINQLMAEGEKLSKKQLAQSAIIKKLRAKIKEAETLEEKKGELITKLQSEENKLKSILRDKEETEKLLQETIE  526 (961)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            444555666666666666655554444555555444444332233344456666666666666555431    2234455


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 008135          311 RMRRELQAVERDIADAENARNEWESKTWDLD  341 (576)
Q Consensus       311 r~~~Er~~L~~~l~~~e~~~~~l~~~~~~~e  341 (576)
                      +|+.+....+..+.......++++.+..-.+
T Consensus       527 k~~ae~~rq~~~~~~sr~~~~~le~~~~a~q  557 (961)
T KOG4673|consen  527 KHQAELTRQKDYYSNSRALAAALEAQALAEQ  557 (961)
T ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence            5665555555555554445555554443333

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=96.98  E-value=0.036  Score=57.88  Aligned_cols=75  Identities=20%  Similarity=0.279  Sum_probs=38.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCHHHHHHHHHHHHHHH
Q 008135          246 LEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVK-LQTINARDVERMRRELQAVE  320 (576)
Q Consensus       246 L~~D~~K~~~~i~~l~~~~~~~e~~l~~l~~Ele~~~~e~~~l~~e~~eL~~~l~-~Q~~s~~di~r~~~Er~~L~  320 (576)
                      +...+.....-+......+.+++.++..+..+++....++..+..++.++++.+. .++++..+|.++..+...|+
T Consensus       214 lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~~~~r~~t~~Ev~~Lk~~~~~Le  289 (325)
T PF08317_consen  214 LRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEKIREECRGWTRSEVKRLKAKVDALE  289 (325)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence            3333334444444444444444444444445555555555555556666655554 35566666666555555443

>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]

Probab=96.98  E-value=0.96  Score=50.97  Aligned_cols=30  Identities=13%  Similarity=0.051  Sum_probs=12.5

Q ss_pred             HHHHHHHHHHHhHH--HHHHHHHHHHHHhccc
Q 008135          530 KERMESKISKMNKG--ISETALTVSEAYKNSL  559 (576)
Q Consensus       530 K~~i~~~i~~~~~~--~~~~~~~i~~~f~~~~  559 (576)
                      |..++..++.++..  -+..++.=.++|+-++
T Consensus       416 kneL~~a~ekld~mgthl~mad~Q~s~fk~Lk  447 (1265)
T KOG0976|consen  416 KNELQEALEKLDLMGTHLSMADYQLSNFKVLK  447 (1265)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHhhHHHHH
Confidence            33444444443322  2233344445555433

>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function

Probab=96.93  E-value=1.1  Score=50.61  Aligned_cols=46  Identities=15%  Similarity=0.187  Sum_probs=34.2

Q ss_pred             HHHHHHHHHHHHhhhCCCCCCC--CCCCCCCHHHHHHHHHHHHHcCCC
Q 008135           60 HQSSAIRAINAHLSSHSFHIAF--PLKQVPSVKDITDVIKFLISQLDY  105 (576)
Q Consensus        60 ~q~~~~~~i~~fL~~~~~~~~~--k~l~~pt~k~f~~i~~~L~~~ld~  105 (576)
                      -+-...-.|-.++.+-||+..+  -++.=|+.++.-.||.||...|-.
T Consensus        63 aRfr~~~~lA~~~k~lGy~~digyq~fLYp~e~~~R~ll~fLiekLP~  110 (594)
T PF05667_consen   63 ARFRVGTSLAQACKELGYRGDIGYQTFLYPNEKDLRRLLMFLIEKLPR  110 (594)
T ss_pred             HHHHHHHHHHHHHHHcCCCCCCcchhhccCChHHHHHHHHHHHHHCCc
Confidence            3344566777888888997443  445568889999999999999863

>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []

Probab=96.90  E-value=1.2  Score=50.85  Aligned_cols=119  Identities=16%  Similarity=0.197  Sum_probs=79.2

Q ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH---hhhhHH
Q 008135          414 EELISLQQQSSEMAAKIEGKRKRIDALQFHINE----METQLNLLSKETQEITKRCAEEAKKMEEDIQTEA---HNLDMV  486 (576)
Q Consensus       414 ~e~~~Lq~~l~~l~~~ieek~~~l~~Le~kl~~----l~~ql~~lk~e~eee~~~~~~Ei~kl~eele~~~---~~~~~~  486 (576)
                      .+...+.+++-.++..+..|+.+|++|..=+..    .+.-+..++..++.+...+..-+.+|+.++..++   .....+
T Consensus       583 ~d~e~l~eqilKLKSLLSTKREQIaTLRTVLKANKqTAEvALanLKsKYE~EK~~v~etm~kLRnELK~LKEDAATFsSl  662 (717)
T PF09730_consen  583 KDKEELQEQILKLKSLLSTKREQIATLRTVLKANKQTAEVALANLKSKYENEKAMVSETMMKLRNELKALKEDAATFSSL  662 (717)
T ss_pred             ccHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            356677888889999999999999988765553    4455677888888888888888888888888875   222222


Q ss_pred             H-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135          487 E-------REAVEVLKASESKFQEAIRQCEEEIQIRALDLFALVDSVSKYKERMESKISKM  540 (576)
Q Consensus       487 ~-------~ea~~el~~~~~~~ee~~~e~eeek~~l~~el~~l~~~i~k~K~~i~~~i~~~  540 (576)
                      .       .|-..++++.+.++..+.    ++|++|..=|.-    ...-|--+-.+++++
T Consensus       663 RamFa~RCdEYvtQldemqrqL~aAE----dEKKTLNsLLRm----AIQQKLaLTQRLEdl  715 (717)
T PF09730_consen  663 RAMFAARCDEYVTQLDEMQRQLAAAE----DEKKTLNSLLRM----AIQQKLALTQRLEDL  715 (717)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhH----HHHHHHHHHHHH----HHHHHHHHHHHHHhc
Confidence            2       234455555555555554    788777654443    334455555555544

Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=96.90  E-value=1.2  Score=51.08  Aligned_cols=92  Identities=17%  Similarity=0.230  Sum_probs=40.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008135          238 KLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRRELQ  317 (576)
Q Consensus       238 ~l~~~~~~L~~D~~K~~~~i~~l~~~~~~~e~~l~~l~~Ele~~~~e~~~l~~e~~eL~~~l~~Q~~s~~di~r~~~Er~  317 (576)
                      .|+.+.+.|++|+......=.++..++       ..+...-.....++.+++.+++.|+.++....-   ....=+.-+.
T Consensus       422 rLE~dvkkLraeLq~~Rq~E~ELRsqi-------s~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~---aRq~DKq~l~  491 (697)
T PF09726_consen  422 RLEADVKKLRAELQSSRQSEQELRSQI-------SSLTNNERSLKSELSQLRQENEQLQNKLQNLVQ---ARQQDKQSLQ  491 (697)
T ss_pred             HHHHHHHHHHHHHHhhhhhHHHHHHHH-------hhccccchHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Confidence            333344444444444444444444333       333332223445556666666666655433210   0111112234


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhH
Q 008135          318 AVERDIADAENARNEWESKTWD  339 (576)
Q Consensus       318 ~L~~~l~~~e~~~~~l~~~~~~  339 (576)
                      .|++.|.+...++..++.+..+
T Consensus       492 ~LEkrL~eE~~~R~~lEkQL~e  513 (697)
T PF09726_consen  492 QLEKRLAEERRQRASLEKQLQE  513 (697)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            4555555555555555444433

; GO: 0016021 integral to membrane

>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]

Probab=96.89  E-value=1.4  Score=51.47  Aligned_cols=124  Identities=10%  Similarity=0.213  Sum_probs=75.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHh
Q 008135          402 ADDVKRSSVEKLEELISLQQQSSEMAAKIEGKRKRIDALQFHINEMETQLNLLSKETQEITKRCAEEAKKMEEDIQTEAH  481 (576)
Q Consensus       402 ~~ei~~~~~~~~~e~~~Lq~~l~~l~~~ieek~~~l~~Le~kl~~l~~ql~~lk~e~eee~~~~~~Ei~kl~eele~~~~  481 (576)
                      ..+......++..++.+|..+++-...  .+...++..++..+..++.+++.++..-+..    ...+... ++|+. + 
T Consensus       776 ~~~~a~k~~ef~~q~~~l~~~l~fe~~--~d~~~~ve~~~~~v~~~~~~~~~~~~~e~~~----~k~i~e~-~~~e~-k-  846 (1141)
T KOG0018|consen  776 QQEFAKKRLEFENQKAKLENQLDFEKQ--KDTQRRVERWERSVEDLEKEIEGLKKDEEAA----EKIIAEI-EELEK-K-  846 (1141)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhhheec--ccHHHHHHHHHHHHHHHHHhHHhhHHHHHHH----HHHHhhH-HHHHH-H-
Confidence            333444455566666666666665544  5556666666666666666666666533222    2222222 34444 2 


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135          482 NLDMVEREAVEVLKASESKFQEAIRQCEEEIQIRALDLFALVDSVSKYKERMESKISK  539 (576)
Q Consensus       482 ~~~~~~~ea~~el~~~~~~~ee~~~e~eeek~~l~~el~~l~~~i~k~K~~i~~~i~~  539 (576)
                      + +..-.+.+.++.+|+..+..+.    .+..+|.+++..+...|+++....+.-+..
T Consensus       847 ~-k~~~~~~~~e~~e~~k~~~~~~----~~~tkl~~~i~~~es~ie~~~~er~~lL~~  899 (1141)
T KOG0018|consen  847 N-KSKFEKKEDEINEVKKILRRLV----KELTKLDKEITSIESKIERKESERHNLLSK  899 (1141)
T ss_pred             H-HHHHHHHHHHHHHHHHHHHHHH----HHHHHHhhhhhhhhhHHHHHHHHHHHHHHH
Confidence            2 2222345577778887777766    778888888888888888887777776654

>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD

Probab=96.87  E-value=1.3  Score=50.81  Aligned_cols=26  Identities=12%  Similarity=0.252  Sum_probs=13.6

Q ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHH
Q 008135          420 QQQSSEMAAKIEGKRKRIDALQFHIN  445 (576)
Q Consensus       420 q~~l~~l~~~ieek~~~l~~Le~kl~  445 (576)
                      +..+.++...+.+.+.++..+..++.
T Consensus       390 ~~~~~~~~~~~~~~e~el~~l~~~l~  415 (650)
T TIGR03185       390 QDAKSQLLKELRELEEELAEVDKKIS  415 (650)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            34445555555555555555555554

This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.87  E-value=0.74  Score=52.06  Aligned_cols=15  Identities=20%  Similarity=0.401  Sum_probs=8.8

Q ss_pred             HHHHHHHHHHHHHHH
Q 008135          144 AYLALIHWLVQIASY  158 (576)
Q Consensus       144 ~~l~~L~WLv~l~~~  158 (576)
                      .+-|+...|.-++.|
T Consensus       544 viqgl~A~lLgl~~~  558 (970)
T KOG0946|consen  544 VIQGLCAFLLGLCYY  558 (970)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            344666666666655

>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]

Probab=96.83  E-value=1.6  Score=51.20  Aligned_cols=20  Identities=10%  Similarity=0.132  Sum_probs=13.4

Q ss_pred             HHHHHHHHHHHHHHcCCCCC
Q 008135          174 SMYMYASDSYLNYIEGKDGD  193 (576)
Q Consensus       174 ~~~~y~~~~Y~~fl~g~d~~  193 (576)
                      ...+-+++.-+.|+...+..
T Consensus      1471 ~el~~Li~~v~~Flt~~~ad 1490 (1758)
T KOG0994|consen 1471 RELRNLIQQVRDFLTQPDAD 1490 (1758)
T ss_pred             HHHHHHHHHHHHHhcCCCCC
Confidence            35566777778887776633

>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain

Probab=96.80  E-value=0.74  Score=46.91  Aligned_cols=88  Identities=18%  Similarity=0.280  Sum_probs=48.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHH
Q 008135          235 EREKLEKEKCVLEEDLNKFNAI-IGELNMRKEKMEKLVEEKEREIGK-KVEEHKRICEENEEFKKRVKLQTINARDVERM  312 (576)
Q Consensus       235 ~l~~l~~~~~~L~~D~~K~~~~-i~~l~~~~~~~e~~l~~l~~Ele~-~~~e~~~l~~e~~eL~~~l~~Q~~s~~di~r~  312 (576)
                      +++.+.+++..|..++++-..+ .+.|..++.++...-.+++..|+. .......|...+..|.......   ....+++
T Consensus        85 kl~~l~keKe~L~~~~e~EEE~ltn~L~rkl~qLr~EK~~lE~~Le~EqE~~V~kL~k~i~~Le~e~~~~---q~~le~L  161 (310)
T PF09755_consen   85 KLQQLKKEKETLALKYEQEEEFLTNDLSRKLNQLRQEKVELENQLEQEQEYLVNKLQKKIERLEKEKSAK---QEELERL  161 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHh---HHHHHHH
Confidence            4556666666666565555443 455666666666666666666654 2234455555555554443221   2345566


Q ss_pred             HHHHHHHHHHHHH
Q 008135          313 RRELQAVERDIAD  325 (576)
Q Consensus       313 ~~Er~~L~~~l~~  325 (576)
                      .+|...|+..|+.
T Consensus       162 r~EKVdlEn~LE~  174 (310)
T PF09755_consen  162 RREKVDLENTLEQ  174 (310)
T ss_pred             HHHHHhHHHHHHH
Confidence            6666556555543

>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]

Probab=96.77  E-value=1.5  Score=50.10  Aligned_cols=74  Identities=15%  Similarity=0.281  Sum_probs=41.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 008135          405 VKRSSVEKLEELISLQQQSSEMAAKIEGKRKRIDALQFHINEMETQLNLLSKETQEITKRCAEEAKKMEEDIQT  478 (576)
Q Consensus       405 i~~~~~~~~~e~~~Lq~~l~~l~~~ieek~~~l~~Le~kl~~l~~ql~~lk~e~eee~~~~~~Ei~kl~eele~  478 (576)
                      +.+....+-+.+..++.+.+....+.++....++.++.++..+..+++.+...+.+.....++....+...+..
T Consensus       464 ~~~~~~~L~d~le~~~~~~~~~~~K~e~~~~~le~l~~El~~l~~e~~~lq~~~~~~~qs~~~~~~~l~~~l~~  537 (980)
T KOG0980|consen  464 VEEENTNLNDQLEELQRAAGRAETKTESQAKALESLRQELALLLIELEELQRTLSNLAQSHNNQLAQLEDLLKQ  537 (980)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHh
Confidence            33344444455555666666666666666666666666666666666666666555555555555444444333

>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]

Probab=96.76  E-value=0.77  Score=46.52  Aligned_cols=40  Identities=10%  Similarity=0.315  Sum_probs=19.9

Q ss_pred             HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHH
Q 008135          285 HKRICEENEEFKKRVKLQTINARDVERMRRELQAVERDIA  324 (576)
Q Consensus       285 ~~~l~~e~~eL~~~l~~Q~~s~~di~r~~~Er~~L~~~l~  324 (576)
                      +..++.++.+|......-.++++.=.++-+.+..|.+.+.
T Consensus       109 ~~~ler~i~~Le~~~~T~~L~~e~E~~lvq~I~~L~k~le  148 (294)
T COG1340         109 IKSLEREIERLEKKQQTSVLTPEEERELVQKIKELRKELE  148 (294)
T ss_pred             HHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHH
Confidence            3444555555555555555555555444444444444444

>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5

Probab=96.72  E-value=1.5  Score=49.52  Aligned_cols=44  Identities=20%  Similarity=0.194  Sum_probs=29.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 008135          412 KLEELISLQQQSSEMAAKIEGKRKRIDALQFHINEMETQLNLLS  455 (576)
Q Consensus       412 ~~~e~~~Lq~~l~~l~~~ieek~~~l~~Le~kl~~l~~ql~~lk  455 (576)
                      +...+..++..++.+...++.+..++..|+...+.+..++....
T Consensus       200 L~~kl~~l~~~l~~~~e~le~K~qE~~~Lq~q~dq~~~~Lqqy~  243 (617)
T PF15070_consen  200 LQKKLGELQEKLHNLKEKLELKSQEAQSLQEQRDQYLGHLQQYV  243 (617)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            34455567777777777777777777777777666555555443

>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril

Probab=96.66  E-value=0.00044  Score=80.99  Aligned_cols=48  Identities=23%  Similarity=0.324  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 008135          407 RSSVEKLEELISLQQQSSEMAAKIEGKRKRIDALQFHINEMETQLNLL  454 (576)
Q Consensus       407 ~~~~~~~~e~~~Lq~~l~~l~~~ieek~~~l~~Le~kl~~l~~ql~~l  454 (576)
                      +....+..++..|...++++...++..+..+..|+..+..+..+++..
T Consensus       405 ~e~r~~~te~~~Lk~~lee~~e~~e~lere~k~L~~El~dl~~q~~~~  452 (859)
T PF01576_consen  405 REARELETELFKLKNELEELQEQLEELERENKQLQDELEDLTSQLDDA  452 (859)
T ss_dssp             ------------------------------------------------
T ss_pred             HHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhccchhhhhhh
Confidence            333444455555666666666666666666666666666555555443

Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.

>smart00787 Spc7 Spc7 kinetochore protein

Probab=96.61  E-value=0.3  Score=50.51  Aligned_cols=23  Identities=35%  Similarity=0.496  Sum_probs=9.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Q 008135          237 EKLEKEKCVLEEDLNKFNAIIGE  259 (576)
Q Consensus       237 ~~l~~~~~~L~~D~~K~~~~i~~  259 (576)
                      ..+..+...|+.++..+++....
T Consensus       175 ~~l~~~~~~L~~e~~~L~~~~~e  197 (312)
T smart00787      175 PKLRDRKDALEEELRQLKQLEDE  197 (312)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHH
Confidence            33444444444444444443333

This domain is found in cell division proteins which are required for kinetochore-spindle association.

>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site

Probab=96.61  E-value=1.8  Score=48.77  Aligned_cols=44  Identities=14%  Similarity=0.267  Sum_probs=21.7

Q ss_pred             HHHHHHHHHHHHHHHhhhHHHH-HHHHHHHHHHHHHHHHHHHHHH
Q 008135          321 RDIADAENARNEWESKTWDLDS-KLGRKFKELEALSMECNQAMKR  364 (576)
Q Consensus       321 ~~l~~~e~~~~~l~~~~~~~e~-~l~~~~e~le~l~~~yn~~~~k  364 (576)
                      ..++++......+....+.+.- .+...++.+...+..+...+..
T Consensus       226 ~ql~eL~~gy~~m~~~gy~l~~~~i~~~i~~i~~~l~~~~~~L~~  270 (560)
T PF06160_consen  226 DQLEELKEGYREMEEEGYYLEHLDIEEEIEQIEEQLEEALALLKN  270 (560)
T ss_pred             HHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHc
Confidence            3445555555555555444432 4455555555555554444433

EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

Probab=96.58  E-value=0.89  Score=44.95  Aligned_cols=92  Identities=20%  Similarity=0.236  Sum_probs=48.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHH
Q 008135          247 EEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRRELQAVERDIADA  326 (576)
Q Consensus       247 ~~D~~K~~~~i~~l~~~~~~~e~~l~~l~~Ele~~~~e~~~l~~e~~eL~~~l~~Q~~s~~di~r~~~Er~~L~~~l~~~  326 (576)
                      ..++.|.++-++.+......++..+.+++.+.-..+.++..+...++..+..+ .-..+..+...++.|.+.+++.+..+
T Consensus        30 ~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl-~~v~~~~e~~aL~~E~~~ak~r~~~l  108 (239)
T COG1579          30 RKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKL-SAVKDERELRALNIEIQIAKERINSL  108 (239)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccccHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444444444444444444445555444444555555555555555555 33345556666666666666666666


Q ss_pred             HHHHHHHHHhhhH
Q 008135          327 ENARNEWESKTWD  339 (576)
Q Consensus       327 e~~~~~l~~~~~~  339 (576)
                      +..+..+......
T Consensus       109 e~el~~l~~~~~~  121 (239)
T COG1579         109 EDELAELMEEIEK  121 (239)
T ss_pred             HHHHHHHHHHHHH
Confidence            5555555444333

>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site

Probab=96.58  E-value=1.9  Score=48.62  Aligned_cols=78  Identities=19%  Similarity=0.130  Sum_probs=35.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 008135          283 EEHKRICEENEEFKKRVKLQTINARDVERMR----RELQAVERDIADAENARNEWESKTWDLDSKLGRKFKELEALSMEC  358 (576)
Q Consensus       283 ~e~~~l~~e~~eL~~~l~~Q~~s~~di~r~~----~Er~~L~~~l~~~e~~~~~l~~~~~~~e~~l~~~~e~le~l~~~y  358 (576)
                      .+++++...+......|.+-  ..+++...+    .+++.|-..++.--.+.....+........+.+..+....+..++
T Consensus       252 ~~i~~i~~~l~~~~~~L~~l--~l~~~~~~~~~i~~~Id~lYd~le~E~~Ak~~V~~~~~~l~~~l~~~~~~~~~l~~e~  329 (560)
T PF06160_consen  252 EEIEQIEEQLEEALALLKNL--ELDEVEEENEEIEERIDQLYDILEKEVEAKKYVEKNLKELYEYLEHAKEQNKELKEEL  329 (560)
T ss_pred             HHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence            55566666666666666443  333443333    333444333333333444444444444444444444444444444


Q ss_pred             HHHH
Q 008135          359 NQAM  362 (576)
Q Consensus       359 n~~~  362 (576)
                      ..+.
T Consensus       330 ~~v~  333 (560)
T PF06160_consen  330 ERVS  333 (560)
T ss_pred             HHHH
Confidence            4433

EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane

>PRK09039 hypothetical protein; Validated

Probab=96.56  E-value=0.49  Score=49.79  Aligned_cols=47  Identities=21%  Similarity=0.314  Sum_probs=22.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 008135          308 DVERMRRELQAVERDIADAENARNEWESKTWDLDSKLGRKFKELEAL  354 (576)
Q Consensus       308 di~r~~~Er~~L~~~l~~~e~~~~~l~~~~~~~e~~l~~~~e~le~l  354 (576)
                      +|.+++.++..|+..+..++..++..+.+..+....+...-..|+..
T Consensus       138 ~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a  184 (343)
T PRK09039        138 QVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVA  184 (343)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45555555555555555555555555544444444444443333333

>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]

Probab=96.54  E-value=1.8  Score=48.08  Aligned_cols=111  Identities=18%  Similarity=0.170  Sum_probs=49.6

Q ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH---HHHH-HHHHHHHHHhHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 008135          416 LISLQQQSSEMAAKIEGKRKRIDALQFHINEMETQL---NLLS-KETQEITKRCAEEAKKMEEDIQTEAHNLDMVEREAV  491 (576)
Q Consensus       416 ~~~Lq~~l~~l~~~ieek~~~l~~Le~kl~~l~~ql---~~lk-~e~eee~~~~~~Ei~kl~eele~~~~~~~~~~~ea~  491 (576)
                      +....+........+++++.++.++++..+.+..-+   +.++ .++.+....+...+..|+..+...++..-..+.-..
T Consensus       532 ~~rq~~~~~~sr~~~~~le~~~~a~qat~d~a~~Dlqk~nrlkQdear~~~~~lvqqv~dLR~~L~~~Eq~aarrEd~~R  611 (961)
T KOG4673|consen  532 LTRQKDYYSNSRALAAALEAQALAEQATNDEARSDLQKENRLKQDEARERESMLVQQVEDLRQTLSKKEQQAARREDMFR  611 (961)
T ss_pred             HHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhhhhHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444555555555555555544443311   1111 123333334455555555555554433322233333


Q ss_pred             HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
Q 008135          492 EVLKASESKFQEAIRQCEEE-------IQIRALDLFALVDSV  526 (576)
Q Consensus       492 ~el~~~~~~~ee~~~e~eee-------k~~l~~el~~l~~~i  526 (576)
                      .++..+++|||.+...+++-       .+-|-+.+..+-.++
T Consensus       612 ~Ei~~LqrRlqaaE~R~eel~q~v~~TTrPLlRQIE~lQ~tl  653 (961)
T KOG4673|consen  612 GEIEDLQRRLQAAERRCEELIQQVPETTRPLLRQIEALQETL  653 (961)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHH
Confidence            44555566666655544443       344444444444443

>smart00787 Spc7 Spc7 kinetochore protein

Probab=96.51  E-value=1.3  Score=45.93  Aligned_cols=126  Identities=23%  Similarity=0.335  Sum_probs=67.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhcCCHHHHH
Q 008135          235 EREKLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKK----VEEHKRICEENEEFKKRVKLQTINARDVE  310 (576)
Q Consensus       235 ~l~~l~~~~~~L~~D~~K~~~~i~~l~~~~~~~e~~l~~l~~Ele~~----~~e~~~l~~e~~eL~~~l~~Q~~s~~di~  310 (576)
                      .++.++.....|..+++....++..+..+...+..++..+++-....    ..++..++.++.++...+...   ..++.
T Consensus       152 ~~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e~~~~d~~eL~~lk~~l~~~~~ei~~~---~~~l~  228 (312)
T smart00787      152 NLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLEDELEDCDPTELDRAKEKLKKLLQEIMIK---VKKLE  228 (312)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCCHHHHHHHHHHHHHHHHHHHHH---HHHHH
Confidence            45566666666777777777777777777777766666654433221    134444444444443333322   23455


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH----HHHHHHHHHHHHHHHH
Q 008135          311 RMRRELQAVERDIADAENARNEWESKTWDLDSKLGRK----FKELEALSMECNQAMK  363 (576)
Q Consensus       311 r~~~Er~~L~~~l~~~e~~~~~l~~~~~~~e~~l~~~----~e~le~l~~~yn~~~~  363 (576)
                      ..+.++..+...|++....+.++...+.+.+..+...    ..++..+...|+.+-.
T Consensus       229 e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~~~~r~~t~~Ei~~Lk~~~~~Le~  285 (312)
T smart00787      229 ELEEELQELESKIEDLTNKKSELNTEIAEAEKKLEQCRGFTFKEIEKLKEQLKLLQS  285 (312)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Confidence            5555555566666655556655555555555432111    1355555555555443

This domain is found in cell division proteins which are required for kinetochore-spindle association.

>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

Probab=96.50  E-value=1.5  Score=46.71  Aligned_cols=39  Identities=15%  Similarity=0.198  Sum_probs=16.1

Q ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135          418 SLQQQSSEMAAKIEGKRKRIDALQFHINEMETQLNLLSK  456 (576)
Q Consensus       418 ~Lq~~l~~l~~~ieek~~~l~~Le~kl~~l~~ql~~lk~  456 (576)
                      .-...+..+...++..+.++..+.....+-...++.+..
T Consensus       168 ~~~~~l~~~~~~iaaeq~~l~~~~~eq~~q~~kl~~~~~  206 (420)
T COG4942         168 ATLKQLAAVRAEIAAEQAELTTLLSEQRAQQAKLAQLLE  206 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444444444444444333333333333333

>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=96.48  E-value=2.1  Score=48.22  Aligned_cols=13  Identities=38%  Similarity=0.478  Sum_probs=7.0

Q ss_pred             CCCCCCCCCCCCC
Q 008135           35 SFASSRPSSIGMG   47 (576)
Q Consensus        35 s~~~sr~s~~g~~   47 (576)
                      +.-|+|.+|+..|
T Consensus       143 tvpS~~~~sl~nG  155 (1118)
T KOG1029|consen  143 TVPSSRHNSLPNG  155 (1118)
T ss_pred             cCCCCCCCCCCCC
Confidence            3345666666444

>PF13851 GAS: Growth-arrest specific micro-tubule binding

Probab=96.43  E-value=0.98  Score=43.76  Aligned_cols=126  Identities=21%  Similarity=0.253  Sum_probs=80.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHH
Q 008135          235 EREKLEKEKCVLEEDLNKFNAI---IGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVER  311 (576)
Q Consensus       235 ~l~~l~~~~~~L~~D~~K~~~~---i~~l~~~~~~~e~~l~~l~~Ele~~~~e~~~l~~e~~eL~~~l~~Q~~s~~di~r  311 (576)
                      ++..++.+...|+.++..|..-   ...+..+...+++.+..++-+-+........++.|+.+|..+...   ++.||..
T Consensus        63 pL~~a~~e~~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~---~i~evqQ  139 (201)
T PF13851_consen   63 PLKKAEEEVEELRKQLKNYEKDKQSLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFES---AIQEVQQ  139 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH
Confidence            7788888888888887777654   444556777788888888888888888889999999999877654   2334433


Q ss_pred             HH--------HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135          312 MR--------RELQAVERDIADAENARNEWESKTWDLDSKLGRKFKELEALSMECNQAMK  363 (576)
Q Consensus       312 ~~--------~Er~~L~~~l~~~e~~~~~l~~~~~~~e~~l~~~~e~le~l~~~yn~~~~  363 (576)
                      .-        +....|...++..+.++..+-....=--.++......++.++...|....
T Consensus       140 k~~~kn~lLEkKl~~l~~~lE~keaqL~evl~~~nldp~~~~~v~~~l~~~l~~KN~~I~  199 (201)
T PF13851_consen  140 KTGLKNLLLEKKLQALSEQLEKKEAQLNEVLAAANLDPAALSQVSKKLEDVLDSKNQTIK  199 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence            22        22244444444444444444333222223345556677777777777654

>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]

Probab=96.37  E-value=2.2  Score=47.18  Aligned_cols=44  Identities=20%  Similarity=0.194  Sum_probs=25.1

Q ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135          414 EELISLQQQSSEMAAKIEGKRKRIDALQFHINEMETQLNLLSKE  457 (576)
Q Consensus       414 ~e~~~Lq~~l~~l~~~ieek~~~l~~Le~kl~~l~~ql~~lk~e  457 (576)
                      +....|+.++..+......+..++..+..+.+.+.++....++-
T Consensus       383 ~knr~lq~e~a~Lr~~n~~~~~~~~~~~~~~~el~~~~~~~ke~  426 (629)
T KOG0963|consen  383 EKNRKLQNENASLRVANSGLSGRITELSKKGEELEAKATEQKEL  426 (629)
T ss_pred             HHHhhhhHHHHHHhccccccchhHHHHHhhhhhhHHHHHHHHHH
Confidence            33445555665665555555556666666666666555555543

>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]

Probab=96.29  E-value=3.3  Score=48.22  Aligned_cols=51  Identities=22%  Similarity=0.298  Sum_probs=31.7

Q ss_pred             HHHHHhHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135          206 EKEKENVSEYVEELKKKVSEMEGAMTGPTEREKLEKEKCVLEEDLNKFNAIIGELNM  262 (576)
Q Consensus       206 ~~~~~~~~~~~~~L~~~~~~le~l~~~~~~l~~l~~~~~~L~~D~~K~~~~i~~l~~  262 (576)
                      +.+++...+.+..|..++..+++      .++.|+.++..+..+-..|..|++.+..
T Consensus       190 rqElEEK~enll~lr~eLddlea------e~~klrqe~~e~l~ea~ra~~yrdelda  240 (1195)
T KOG4643|consen  190 RQELEEKFENLLRLRNELDDLEA------EISKLRQEIEEFLDEAHRADRYRDELDA  240 (1195)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHhhhhhhhHHHH
Confidence            34444444455555555555554      5666777777777777777778777664

>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function

Probab=96.28  E-value=2.8  Score=47.32  Aligned_cols=35  Identities=20%  Similarity=0.359  Sum_probs=19.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 008135          413 LEELISLQQQSSEMAAKIEGKRKRIDALQFHINEM  447 (576)
Q Consensus       413 ~~e~~~Lq~~l~~l~~~ieek~~~l~~Le~kl~~l  447 (576)
                      .+++..++.++..+...+..++.....|...+..+
T Consensus       446 ~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~  480 (594)
T PF05667_consen  446 LQEIKELREEIKEIEEEIRQKEELYKQLVKELEKL  480 (594)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            34444555666666666666666656665555544

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=96.27  E-value=3.1  Score=47.87  Aligned_cols=39  Identities=18%  Similarity=0.221  Sum_probs=15.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135          236 REKLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEK  274 (576)
Q Consensus       236 l~~l~~~~~~L~~D~~K~~~~i~~l~~~~~~~e~~l~~l  274 (576)
                      +..++.++..|+..+..+..-...=...+..+|++|.+.
T Consensus       462 L~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~eE  500 (697)
T PF09726_consen  462 LSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRLAEE  500 (697)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444444444444443333333333233334444444433

; GO: 0016021 integral to membrane

>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []

Probab=96.19  E-value=2.3  Score=45.52  Aligned_cols=35  Identities=23%  Similarity=0.430  Sum_probs=22.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 008135          317 QAVERDIADAENARNEWESKTWDLDSKLGRKFKEL  351 (576)
Q Consensus       317 ~~L~~~l~~~e~~~~~l~~~~~~~e~~l~~~~e~l  351 (576)
                      ..|++.++++..++..++.....++..+..+.+.+
T Consensus       133 ~lL~~~l~~~~eQl~~lr~ar~~Le~Dl~dK~~A~  167 (384)
T PF03148_consen  133 RLLQRTLEQAEEQLRLLRAARYRLEKDLSDKFEAL  167 (384)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44556666666666666666666666666666543

The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=96.14  E-value=0.86  Score=41.64  Aligned_cols=31  Identities=26%  Similarity=0.428  Sum_probs=15.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 008135          311 RMRRELQAVERDIADAENARNEWESKTWDLD  341 (576)
Q Consensus       311 r~~~Er~~L~~~l~~~e~~~~~l~~~~~~~e  341 (576)
                      .+++.++.|...++..+..+.....++.+.+
T Consensus        77 ~l~rriq~LEeele~ae~~L~e~~ekl~e~d  107 (143)
T PF12718_consen   77 QLNRRIQLLEEELEEAEKKLKETTEKLREAD  107 (143)
T ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4555555555555555444444444444433

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].

>PRK04863 mukB cell division protein MukB; Provisional

Probab=96.12  E-value=5.8  Score=49.56  Aligned_cols=8  Identities=0%  Similarity=0.522  Sum_probs=4.5

Q ss_pred             HHHHHHHh
Q 008135          114 DLFVVLKS  121 (576)
Q Consensus       114 ev~~~lk~  121 (576)
                      .++.+|+.
T Consensus       196 kF~kLf~t  203 (1486)
T PRK04863        196 KFYRLIEA  203 (1486)
T ss_pred             HHHHHHHH
Confidence            45566655

>PF14662 CCDC155: Coiled-coil region of CCDC155

Probab=96.11  E-value=1.3  Score=41.95  Aligned_cols=91  Identities=19%  Similarity=0.263  Sum_probs=50.0

Q ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135          204 KLEKEKENVSEYVEELKKKVSEMEGAMTGPTEREKLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVE  283 (576)
Q Consensus       204 kl~~~~~~~~~~~~~L~~~~~~le~l~~~~~~l~~l~~~~~~L~~D~~K~~~~i~~l~~~~~~~e~~l~~l~~Ele~~~~  283 (576)
                      ++...++...+....|..++..|..   ....+..+-..-+++...++++......++.....+-.....++.|-.....
T Consensus        26 kL~~~ve~~ee~na~L~~e~~~L~~---q~~s~Qqal~~aK~l~eEledLk~~~~~lEE~~~~L~aq~rqlEkE~q~L~~  102 (193)
T PF14662_consen   26 KLQRSVETAEEGNAQLAEEITDLRK---QLKSLQQALQKAKALEEELEDLKTLAKSLEEENRSLLAQARQLEKEQQSLVA  102 (193)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4555555555555555555544443   1112334444455566666666666666666666666666666666555556


Q ss_pred             HHHHHHHHHHHHHH
Q 008135          284 EHKRICEENEEFKK  297 (576)
Q Consensus       284 e~~~l~~e~~eL~~  297 (576)
                      ++..++.++..|..
T Consensus       103 ~i~~Lqeen~kl~~  116 (193)
T PF14662_consen  103 EIETLQEENGKLLA  116 (193)
T ss_pred             HHHHHHHHHhHHHH
Confidence            66666666555543

>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]

Probab=96.08  E-value=3.1  Score=46.08  Aligned_cols=58  Identities=17%  Similarity=0.311  Sum_probs=29.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135          398 LESFADDVKRSSVEKLEELISLQQQSSEMAAKIEGKRKRIDALQFHINEMETQLNLLSK  456 (576)
Q Consensus       398 L~~l~~ei~~~~~~~~~e~~~Lq~~l~~l~~~ieek~~~l~~Le~kl~~l~~ql~~lk~  456 (576)
                      +..|..+|.+.-..+.++......++..+...+..+...+..|..++..- +-|+.++.
T Consensus       294 i~~L~~di~~~~~S~~~e~e~~~~qI~~le~~l~~~~~~leel~~kL~~~-sDYeeIK~  351 (629)
T KOG0963|consen  294 IAQLSNDIERLEASLVEEREKHKAQISALEKELKAKISELEELKEKLNSR-SDYEEIKK  351 (629)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-ccHHHHHH
Confidence            33556666655555555555555555555555555555555555444433 33444333

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=96.07  E-value=1.1  Score=40.92  Aligned_cols=52  Identities=27%  Similarity=0.385  Sum_probs=28.0

Q ss_pred             hHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135          211 NVSEYVEELKKKVSEMEGAMTGPTEREKLEKEKCVLEEDLNKFNAIIGELNMRKEKME  268 (576)
Q Consensus       211 ~~~~~~~~L~~~~~~le~l~~~~~~l~~l~~~~~~L~~D~~K~~~~i~~l~~~~~~~e  268 (576)
                      .+.+.+..|+....+++      ..+..|..++..|+.++.+...-+...........
T Consensus        18 ~~e~~~K~le~~~~~~E------~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~   69 (143)
T PF12718_consen   18 ELEAKVKQLEQENEQKE------QEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESE   69 (143)
T ss_pred             HHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence            34444444444444444      25556666666666666666666655555444443

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].

>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=95.90  E-value=5.4  Score=47.33  Aligned_cols=42  Identities=19%  Similarity=0.233  Sum_probs=19.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135          239 LEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGK  280 (576)
Q Consensus       239 l~~~~~~L~~D~~K~~~~i~~l~~~~~~~e~~l~~l~~Ele~  280 (576)
                      |..++..+.-.-.-++-++....+++......+..+++++..
T Consensus       311 L~kenel~~~~~~~~q~~~~~~~~ki~~~~~~~~~~~e~lk~  352 (1293)
T KOG0996|consen  311 LKKENELFRKKNKLCQYILYESRAKIAEMQEELEKIEEGLKD  352 (1293)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence            333333333333333444444455555555555555555443

>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]

Probab=95.77  E-value=6.7  Score=47.40  Aligned_cols=45  Identities=22%  Similarity=0.212  Sum_probs=20.0

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135          318 AVERDIADAENARNEWESKTWDLDSKLGRKFKELEALSMECNQAM  362 (576)
Q Consensus       318 ~L~~~l~~~e~~~~~l~~~~~~~e~~l~~~~e~le~l~~~yn~~~  362 (576)
                      +++.++.++...+..+..++.+....+......++..+.+|+.+.
T Consensus       882 qle~~~~~l~e~~~~~~s~~~e~~~~~~~~~~~l~e~~s~~e~~k  926 (1294)
T KOG0962|consen  882 QLEEDIEELSEEITRLDSKVKELLERIQPLKVELEEAQSEKEELK  926 (1294)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHhhHhhhcchhhhHHHHHHHHHHHH
Confidence            333344444444444444444444444444444444444444443

>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=95.73  E-value=5.8  Score=46.37  Aligned_cols=19  Identities=11%  Similarity=0.060  Sum_probs=12.3

Q ss_pred             HHHHHHHHHHHHHHHhhhh
Q 008135          144 AYLALIHWLVQIASYNYHL  162 (576)
Q Consensus       144 ~~l~~L~WLv~l~~~~~~~  162 (576)
                      .-+|+-++|.+++...+.+
T Consensus       528 ~~lGF~gyls~f~~~p~~v  546 (1072)
T KOG0979|consen  528 KRLGFEGYLSNFIEAPEPV  546 (1072)
T ss_pred             HhcChHHHhhhhhcCcHHH
Confidence            4457778888877655443

>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]

Probab=95.70  E-value=6.3  Score=46.60  Aligned_cols=29  Identities=10%  Similarity=0.153  Sum_probs=19.3

Q ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 008135          526 VSKYKERMESKISKMNKGISETALTVSEA  554 (576)
Q Consensus       526 i~k~K~~i~~~i~~~~~~~~~~~~~i~~~  554 (576)
                      -+.+.+..+..|..+++.+-+.+..|++.
T Consensus      1722 ~~~~L~~~~aeL~~Le~r~~~vl~~I~~r 1750 (1758)
T KOG0994|consen 1722 NEQALEDKAAELAGLEKRVESVLDHINER 1750 (1758)
T ss_pred             hhHHHHHHHHHhhhHHHHHHHHHHHHhhh
Confidence            35556666667777777777777777653

>TIGR02680 conserved hypothetical protein TIGR02680

Probab=95.66  E-value=8.8  Score=47.96  Aligned_cols=80  Identities=13%  Similarity=0.138  Sum_probs=49.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 008135          261 NMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRRELQAVERDIADAENARNEWESKTWDL  340 (576)
Q Consensus       261 ~~~~~~~e~~l~~l~~Ele~~~~e~~~l~~e~~eL~~~l~~Q~~s~~di~r~~~Er~~L~~~l~~~e~~~~~l~~~~~~~  340 (576)
                      +.++.+++..|.++..++.....++..+.+....|....+.-+- ..++..-..+...-...++.....+...+.+....
T Consensus       741 ~~ri~el~~~IaeL~~~i~~l~~~l~~l~~r~~~L~~e~~~~Ps-~~dL~~A~~~l~~A~~~~~~a~~~l~~a~~~l~~a  819 (1353)
T TIGR02680       741 LRRIAELDARLAAVDDELAELARELRALGARQRALADELAGAPS-DRSLRAAHRRAAEAERQAESAERELARAARKAAAA  819 (1353)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34677777777777777777777777777777777777666653 34555555555555555555555555554444333


Q ss_pred             H
Q 008135          341 D  341 (576)
Q Consensus       341 e  341 (576)
                      .
T Consensus       820 ~  820 (1353)
T TIGR02680       820 A  820 (1353)
T ss_pred             H
Confidence            3

Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.

>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=95.49  E-value=7  Score=45.72  Aligned_cols=51  Identities=12%  Similarity=0.203  Sum_probs=31.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhccccc
Q 008135          511 EIQIRALDLFALVDSVSKYKERMESKISKMNKGISETALTVSEAYKNSLPA  561 (576)
Q Consensus       511 ek~~l~~el~~l~~~i~k~K~~i~~~i~~~~~~~~~~~~~i~~~f~~~~~~  561 (576)
                      +.+.+...+......++.++.++-...+.+-..+-+-+.-||+.|...|..
T Consensus       871 el~~l~~~~~~~~~~le~i~~kl~~~ke~w~~~le~~V~~In~~Fs~~F~~  921 (1072)
T KOG0979|consen  871 ELRELETKLEKLSEDLERIKDKLSDVKEVWLPKLEEMVEQINERFSQLFSS  921 (1072)
T ss_pred             HHHHHHhhhhhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            344444555555555556655555555555555666677788888887764

>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]

Probab=95.43  E-value=6.7  Score=45.15  Aligned_cols=57  Identities=11%  Similarity=0.233  Sum_probs=36.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135          403 DDVKRSSVEKLEELISLQQQSSEMAAKIEGKRKRIDALQFHINEMETQLNLLSKETQ  459 (576)
Q Consensus       403 ~ei~~~~~~~~~e~~~Lq~~l~~l~~~ieek~~~l~~Le~kl~~l~~ql~~lk~e~e  459 (576)
                      +++..+...-.....+..+.+.+++..+++..+....++.+.......++.+++|+.
T Consensus       448 ~di~kQle~~~~s~~~~~~~~~~L~d~le~~~~~~~~~~~K~e~~~~~le~l~~El~  504 (980)
T KOG0980|consen  448 DDIQKQLESAEQSIDDVEEENTNLNDQLEELQRAAGRAETKTESQAKALESLRQELA  504 (980)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            333333333334444677777777777777777777777777777777777776544

>PF14662 CCDC155: Coiled-coil region of CCDC155

Probab=95.43  E-value=2.5  Score=40.13  Aligned_cols=96  Identities=10%  Similarity=0.178  Sum_probs=43.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008135          238 KLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRRELQ  317 (576)
Q Consensus       238 ~l~~~~~~L~~D~~K~~~~i~~l~~~~~~~e~~l~~l~~Ele~~~~e~~~l~~e~~eL~~~l~~Q~~s~~di~r~~~Er~  317 (576)
                      .|+--+..|.+...|++.-++.++.....+...+..+...+....                     -...-..-+..|..
T Consensus        12 dL~~~n~~L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~Q---------------------qal~~aK~l~eEle   70 (193)
T PF14662_consen   12 DLQLNNQKLADENAKLQRSVETAEEGNAQLAEEITDLRKQLKSLQ---------------------QALQKAKALEEELE   70 (193)
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHH
Confidence            344444555555555555555555544444444444433332111                     11122223344455


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 008135          318 AVERDIADAENARNEWESKTWDLDSKLGRKFKELEAL  354 (576)
Q Consensus       318 ~L~~~l~~~e~~~~~l~~~~~~~e~~l~~~~e~le~l  354 (576)
                      .|+..+..++.....|..+...++..-.+.+..++.+
T Consensus        71 dLk~~~~~lEE~~~~L~aq~rqlEkE~q~L~~~i~~L  107 (193)
T PF14662_consen   71 DLKTLAKSLEEENRSLLAQARQLEKEQQSLVAEIETL  107 (193)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5555555555555555555555555444444444443

>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]

Probab=95.43  E-value=8.3  Score=46.18  Aligned_cols=13  Identities=15%  Similarity=-0.023  Sum_probs=5.9

Q ss_pred             HHHHHHHHHHHHh
Q 008135          544 ISETALTVSEAYK  556 (576)
Q Consensus       544 ~~~~~~~i~~~f~  556 (576)
                      .+..+..|++.|.
T Consensus       741 ~~~~~~~l~~~~~  753 (908)
T COG0419         741 ALELLEELREKLG  753 (908)
T ss_pred             HHHHHHHHHHHHh
Confidence            3444444444443

>PF15254 CCDC14: Coiled-coil domain-containing protein 14

Probab=95.42  E-value=6.3  Score=44.79  Aligned_cols=127  Identities=17%  Similarity=0.137  Sum_probs=71.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 008135          397 ALESFADDVKRSSVEKLEELISLQQQSSEMAAKIEGKRKRIDALQFHINEMETQLNLLSKETQEITKRCAEEAKKMEEDI  476 (576)
Q Consensus       397 ~L~~l~~ei~~~~~~~~~e~~~Lq~~l~~l~~~ieek~~~l~~Le~kl~~l~~ql~~lk~e~eee~~~~~~Ei~kl~eel  476 (576)
                      .|+.|+-.+..++.+.......|+...+++-..++..+.++..+-.-+.+-+.++-..++..+-+..++..|++..-..+
T Consensus       431 sLqSlN~~Lq~ql~es~k~~e~lq~kneellk~~e~q~~Enk~~~~~~~ekd~~l~~~kq~~d~e~~rik~ev~eal~~~  510 (861)
T PF15254_consen  431 SLQSLNMSLQNQLQESLKSQELLQSKNEELLKVIENQKEENKRLRKMFQEKDQELLENKQQFDIETTRIKIEVEEALVNV  510 (861)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            45566666666666666666778888888888888888888888777777777777777776666555544443333333


Q ss_pred             HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135          477 QTEAHNLDMVEREAVEVLKASESKFQEAIRQCEEEIQIRALDLFALVD  524 (576)
Q Consensus       477 e~~~~~~~~~~~ea~~el~~~~~~~ee~~~e~eeek~~l~~el~~l~~  524 (576)
                      +..+--+.+.++|-.-.-..+++|=.++. .+.|-.+.|+.-+..++.
T Consensus       511 k~~q~kLe~sekEN~iL~itlrQrDaEi~-RL~eLtR~LQ~Sma~lL~  557 (861)
T PF15254_consen  511 KSLQFKLEASEKENQILGITLRQRDAEIE-RLRELTRTLQNSMAKLLS  557 (861)
T ss_pred             HHHhhhHHHHHhhhhHhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHhh
Confidence            33222222222221111122333322222 334455666666666664

>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.37  E-value=5.3  Score=43.54  Aligned_cols=92  Identities=15%  Similarity=0.180  Sum_probs=50.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 008135          242 EKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRRELQAVER  321 (576)
Q Consensus       242 ~~~~L~~D~~K~~~~i~~l~~~~~~~e~~l~~l~~Ele~~~~e~~~l~~e~~eL~~~l~~Q~~s~~di~r~~~Er~~L~~  321 (576)
                      ++..+..-..+|...-..++.....+...|.+.+-.-...-.+...|+.|+-.|+++|..-.-|.-+.+-++.++..|..
T Consensus       129 E~erl~~~~sd~~e~~~~~E~qR~rlr~elKe~KfRE~RllseYSELEEENIsLQKqVs~LR~sQVEyEglkheikRleE  208 (772)
T KOG0999|consen  129 ENERLEKVHSDLKESNAAVEDQRRRLRDELKEYKFREARLLSEYSELEEENISLQKQVSNLRQSQVEYEGLKHEIKRLEE  208 (772)
T ss_pred             HHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHhhhhhhhhHHHHHHHHHHH
Confidence            33333333333333333333333334444444433323334556677777778888888777777777777777777776


Q ss_pred             HHHHHHHHHHHH
Q 008135          322 DIADAENARNEW  333 (576)
Q Consensus       322 ~l~~~e~~~~~l  333 (576)
                      .++-+..+.++.
T Consensus       209 e~elln~q~ee~  220 (772)
T KOG0999|consen  209 ETELLNSQLEEA  220 (772)
T ss_pred             HHHHHHHHHHHH
Confidence            665554444433

>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5

Probab=95.21  E-value=7.3  Score=44.24  Aligned_cols=25  Identities=36%  Similarity=0.541  Sum_probs=16.0

Q ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHh
Q 008135          204 KLEKEKENVSEYVEELKKKVSEMEG  228 (576)
Q Consensus       204 kl~~~~~~~~~~~~~L~~~~~~le~  228 (576)
                      .|..........++.|+..+.+|..
T Consensus        40 ~L~eEk~~~~~~V~eLE~sL~eLk~   64 (617)
T PF15070_consen   40 TLKEEKEHDISRVQELERSLSELKN   64 (617)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4445555566667777777777765

>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []

Probab=95.15  E-value=0.93  Score=40.03  Aligned_cols=68  Identities=15%  Similarity=0.252  Sum_probs=34.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHH
Q 008135          257 IGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRRELQAVERDIA  324 (576)
Q Consensus       257 i~~l~~~~~~~e~~l~~l~~Ele~~~~e~~~l~~e~~eL~~~l~~Q~~s~~di~r~~~Er~~L~~~l~  324 (576)
                      ++.+.+.+..++..+..++.++.....+...+.+|+-.|-...+...-....+..+..+...|+...+
T Consensus        18 ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~   85 (120)
T PF12325_consen   18 VERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQ   85 (120)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444555555555555555555555555555555555555444443344444455555544444443

The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].

>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex

Probab=95.13  E-value=7.2  Score=43.72  Aligned_cols=116  Identities=19%  Similarity=0.309  Sum_probs=69.8

Q ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 008135          416 LISLQQQSSEMAAKIEGKRKRIDALQFHINEMETQLNLLSKETQEITKRCAEEAKKMEEDIQTEAHNLDMVEREAVEVLK  495 (576)
Q Consensus       416 ~~~Lq~~l~~l~~~ieek~~~l~~Le~kl~~l~~ql~~lk~e~eee~~~~~~Ei~kl~eele~~~~~~~~~~~ea~~el~  495 (576)
                      +..|+.+...+...+.--...+..++.++..+..+++.+++..++.       .+.+..+|+...    +.+.+...++.
T Consensus       610 ieeLqqeNk~LKKk~~aE~kq~~~~eikVn~L~~E~e~~kk~~eE~-------~~~~~keie~K~----~~e~~L~~Eve  678 (786)
T PF05483_consen  610 IEELQQENKALKKKITAESKQSNVYEIKVNKLQEELENLKKKHEEE-------TDKYQKEIESKS----ISEEELLGEVE  678 (786)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH-------HHHHHHHHHHhh----hhHHHHHHHHH
Confidence            3345555555555555555566666666666666666666665555       344444444432    11122224555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 008135          496 ASESKFQEAIRQCEEEIQIRALDLFALVDSVSKYKERMESKISKMNK  542 (576)
Q Consensus       496 ~~~~~~ee~~~e~eeek~~l~~el~~l~~~i~k~K~~i~~~i~~~~~  542 (576)
                      .++.-..++...-.+.=-+|+..+.+++..+++||..-..-|++-+.
T Consensus       679 K~k~~a~EAvK~q~EtdlrCQhKIAeMVALMEKHK~qYDkiVEEkDa  725 (786)
T PF05483_consen  679 KAKLTADEAVKLQEETDLRCQHKIAEMVALMEKHKHQYDKIVEEKDA  725 (786)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            55555666554444444688999999999999999888877777443

Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex

>PF15066 CAGE1: Cancer-associated gene protein 1 family

Probab=95.04  E-value=6  Score=42.33  Aligned_cols=94  Identities=15%  Similarity=0.187  Sum_probs=47.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Q 008135          244 CVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRRELQAVERDI  323 (576)
Q Consensus       244 ~~L~~D~~K~~~~i~~l~~~~~~~e~~l~~l~~Ele~~~~e~~~l~~e~~eL~~~l~~Q~~s~~di~r~~~Er~~L~~~l  323 (576)
                      -+|...+.|++.-....+.+|..++-.-              --|+..+++|+-.+..|.+-++-|..+....+.|-.+-
T Consensus       313 maLNEvL~kLk~tn~kQq~~IqdLq~sN--------------~yLe~kvkeLQ~k~~kQqvfvDiinkLk~niEeLIedK  378 (527)
T PF15066_consen  313 MALNEVLQKLKHTNRKQQNRIQDLQCSN--------------LYLEKKVKELQMKITKQQVFVDIINKLKENIEELIEDK  378 (527)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHhhhcc--------------HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhH
Confidence            3455555555554444444443332221              13445666777777777777777766666666654443


Q ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 008135          324 ADAENARNEWESKTWDLDSKLGRKFKEL  351 (576)
Q Consensus       324 ~~~e~~~~~l~~~~~~~e~~l~~~~e~l  351 (576)
                      =..--.+.++.....++.-.+++..+.|
T Consensus       379 Y~viLEKnd~~k~lqnLqe~la~tqk~L  406 (527)
T PF15066_consen  379 YRVILEKNDIEKTLQNLQEALANTQKHL  406 (527)
T ss_pred             hHhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence            2222333333344444443333333333

>PRK11281 hypothetical protein; Provisional

Probab=94.95  E-value=12  Score=45.41  Aligned_cols=26  Identities=15%  Similarity=0.217  Sum_probs=11.3

Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135          431 EGKRKRIDALQFHINEMETQLNLLSK  456 (576)
Q Consensus       431 eek~~~l~~Le~kl~~l~~ql~~lk~  456 (576)
                      +....++..++.+++.+...++..+.
T Consensus       230 d~~~~~~~~~~~~~~~lq~~in~kr~  255 (1113)
T PRK11281        230 DYLTARIQRLEHQLQLLQEAINSKRL  255 (1113)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33334444444444444444444333

>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin

Probab=94.94  E-value=4.7  Score=40.62  Aligned_cols=58  Identities=17%  Similarity=0.406  Sum_probs=41.1

Q ss_pred             CCCC--CCCCCCCCCCHHHHHHHHHHHHHcCCCCC--CcCh--HhHHHHHHHhcCCCCccccccc
Q 008135           75 HSFH--IAFPLKQVPSVKDITDVIKFLISQLDYPS--TTKF--EEDLFVVLKSLSCPFKINKSTL  133 (576)
Q Consensus        75 ~~~~--~~~k~l~~pt~k~f~~i~~~L~~~ld~~~--~~k~--eeev~~~lk~l~yP~~i~ks~l  133 (576)
                      -|||  +|+-.+++|......+|..||..++||..  ...+  |++=+.|+|... -|..+|+.+
T Consensus         3 LGypr~iSmenFrtPNF~LVAeiL~WLv~rydP~~~i~~~i~tE~dRV~Fik~v~-~~~~tKa~I   66 (267)
T PF10234_consen    3 LGYPRLISMENFRTPNFELVAEILRWLVKRYDPDADIPGDIDTEQDRVFFIKSVA-EFMATKARI   66 (267)
T ss_pred             CCCCCCCcHHHcCCCChHHHHHHHHHHHHHcCCCCCCCCcCCcHHHHHHHHHHHH-HHHHHHhhe
Confidence            4888  56667789999999999999999999865  3333  446677788743 223344444

Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].

>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms

Probab=94.90  E-value=0.0072  Score=69.91  Aligned_cols=45  Identities=27%  Similarity=0.213  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135          417 ISLQQQSSEMAAKIEGKRKRIDALQFHINEMETQLNLLSKETQEI  461 (576)
Q Consensus       417 ~~Lq~~l~~l~~~ieek~~~l~~Le~kl~~l~~ql~~lk~e~eee  461 (576)
                      ..|+..++..+......+.++.....++..++.+++.+.+.+.+.
T Consensus       484 ~~L~~~Leda~~~~~~Le~~~~~~~~~~~~lq~qle~lq~~l~~~  528 (713)
T PF05622_consen  484 EELQSQLEDANRRKEKLEEENREANEKILELQSQLEELQKSLQEQ  528 (713)
T ss_dssp             ---------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345556666666666666666666666666666666666655443

The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.

>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]

Probab=94.90  E-value=7.2  Score=42.57  Aligned_cols=46  Identities=15%  Similarity=0.156  Sum_probs=20.9

Q ss_pred             HHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135          213 SEYVEELKKKVSEMEGAMTGPTEREKLEKEKCVLEEDLNKFNAIIGE  259 (576)
Q Consensus       213 ~~~~~~L~~~~~~le~l~~~~~~l~~l~~~~~~L~~D~~K~~~~i~~  259 (576)
                      ...+..++.++.+.+.+.+..+++++.+ -....+..+..+.+|++.
T Consensus       170 Ek~Le~i~~~l~qf~~lt~~Gd~ieA~e-vl~~~ee~~~~L~~~~e~  215 (570)
T COG4477         170 EKKLENIEEELSQFVELTSSGDYIEARE-VLEEAEEHMIALRSIMER  215 (570)
T ss_pred             HHHHHHHHHHHHHHHHhccCCChhHHHH-HHHHHHHHHHHHHHHHHH
Confidence            3344444455555555555555555432 233333344444444443

>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]

Probab=94.89  E-value=5  Score=40.76  Aligned_cols=28  Identities=18%  Similarity=0.261  Sum_probs=11.0

Q ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 008135          418 SLQQQSSEMAAKIEGKRKRIDALQFHIN  445 (576)
Q Consensus       418 ~Lq~~l~~l~~~ieek~~~l~~Le~kl~  445 (576)
                      .+..+++.+.....+..+.+..|-.+++
T Consensus       162 el~aei~~lk~~~~e~~eki~~la~eaq  189 (294)
T COG1340         162 ELKAEIDELKKKAREIHEKIQELANEAQ  189 (294)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334444444444443333333333333

>KOG0243 consensus Kinesin-like protein [Cytoskeleton]

Probab=94.83  E-value=11  Score=44.52  Aligned_cols=73  Identities=22%  Similarity=0.369  Sum_probs=36.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHH
Q 008135          253 FNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRRELQAVERDIADAEN  328 (576)
Q Consensus       253 ~~~~i~~l~~~~~~~e~~l~~l~~Ele~~~~e~~~l~~e~~eL~~~l~~Q~~s~~di~r~~~Er~~L~~~l~~~e~  328 (576)
                      ....+++++.++..++..+..+++-+.......+.+..+...++..+.+.   ..++..+..+..++...|...+.
T Consensus       446 ~~~~ieele~el~~~~~~l~~~~e~~~~~~~~~~~l~~~~~~~k~~L~~~---~~el~~~~ee~~~~~~~l~~~e~  518 (1041)
T KOG0243|consen  446 MAEQIEELEEELENLEKQLKDLTELYMNQLEIKELLKEEKEKLKSKLQNK---NKELESLKEELQQAKATLKEEEE  518 (1041)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344444444444444444444433333334445556666666665554   34555666666666665544433

>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins

Probab=94.82  E-value=0.39  Score=55.79  Aligned_cols=38  Identities=11%  Similarity=0.231  Sum_probs=29.0

Q ss_pred             HHHHHHHHHHHHHhHH---HHHHHHHHHHHHhccccccccc
Q 008135          528 KYKERMESKISKMNKG---ISETALTVSEAYKNSLPAQFSI  565 (576)
Q Consensus       528 k~K~~i~~~i~~~~~~---~~~~~~~i~~~f~~~~~~~~~~  565 (576)
                      +-...++..|+...+.   +.+.|.+=+..|++.+..-||+
T Consensus       606 ~e~~~l~~~~~~~ekr~~RLkevf~~ks~eFr~av~~llGy  646 (722)
T PF05557_consen  606 KEIAELKAELASAEKRNQRLKEVFKAKSQEFREAVYSLLGY  646 (722)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            3345566666665443   8899999999999999999998

The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.

>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family

Probab=94.74  E-value=7.2  Score=41.82  Aligned_cols=100  Identities=11%  Similarity=0.134  Sum_probs=60.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 008135          240 EKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRRELQAV  319 (576)
Q Consensus       240 ~~~~~~L~~D~~K~~~~i~~l~~~~~~~e~~l~~l~~Ele~~~~e~~~l~~e~~eL~~~l~~Q~~s~~di~r~~~Er~~L  319 (576)
                      ......+......+++-+..++..+..++..+..++..+.....++...+......+.-++..-++..++.....+...+
T Consensus       129 ~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~i~~~~~~l~~~~~~l~~~~~~~~~~~~L~~~g~is~~~~~~~~~~~~~~  208 (423)
T TIGR01843       129 KGQQSLFESRKSTLRAQLELILAQIKQLEAELAGLQAQLQALRQQLEVISEELEARRKLKEKGLVSRLELLELERERAEA  208 (423)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence            33344444445555555666666666666666666666666666666666666666666666666777777777777666


Q ss_pred             HHHHHHHHHHHHHHHHhhhH
Q 008135          320 ERDIADAENARNEWESKTWD  339 (576)
Q Consensus       320 ~~~l~~~e~~~~~l~~~~~~  339 (576)
                      +..+..++..+..++.....
T Consensus       209 ~~~l~~~~~~l~~~~~~l~~  228 (423)
T TIGR01843       209 QGELGRLEAELEVLKRQIDE  228 (423)
T ss_pred             HhHHHHHHHHHHHHHHHHHH
Confidence            66666665555555444433

Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.

>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure

Probab=94.71  E-value=8.3  Score=42.95  Aligned_cols=72  Identities=17%  Similarity=0.158  Sum_probs=37.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhcCCHHH
Q 008135          237 EKLEKEKCVLEEDLNKFNAIIGELNMRKEKM-EKLVEEKEREIGK---KVEEHKRICEENEEFKKRVKLQTINARD  308 (576)
Q Consensus       237 ~~l~~~~~~L~~D~~K~~~~i~~l~~~~~~~-e~~l~~l~~Ele~---~~~e~~~l~~e~~eL~~~l~~Q~~s~~d  308 (576)
                      ..+..+.+.+..++.....-+..+...+..+ ..+...+..+...   .....+.|+.....|...+....-+...
T Consensus       105 ~sl~~e~a~lk~~l~e~~~El~~l~~~l~~l~~~~~~~~~~~~~~~~l~~~~~~sL~ekl~lld~al~~~~~~~~~  180 (511)
T PF09787_consen  105 DSLSSELAVLKIRLQELDQELRRLRRQLEELQNEKSRILSDESTVSRLQNGAPRSLQEKLSLLDEALKREDGNAIT  180 (511)
T ss_pred             ccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCccHHH
Confidence            3444556666666666666666666555555 2222222222111   1122367777777777777776665444

They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].

>KOG0243 consensus Kinesin-like protein [Cytoskeleton]

Probab=94.56  E-value=13  Score=44.02  Aligned_cols=76  Identities=22%  Similarity=0.243  Sum_probs=35.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH
Q 008135          236 REKLEKEKCVLEEDLNKFNAIIG-------ELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARD  308 (576)
Q Consensus       236 l~~l~~~~~~L~~D~~K~~~~i~-------~l~~~~~~~e~~l~~l~~Ele~~~~e~~~l~~e~~eL~~~l~~Q~~s~~d  308 (576)
                      ++.++.+...+...+..++....       .+..+...++.+|.....+++....++.+++..+..-...+.+|.-+..-
T Consensus       450 ieele~el~~~~~~l~~~~e~~~~~~~~~~~l~~~~~~~k~~L~~~~~el~~~~ee~~~~~~~l~~~e~ii~~~~~se~~  529 (1041)
T KOG0243|consen  450 IEELEEELENLEKQLKDLTELYMNQLEIKELLKEEKEKLKSKLQNKNKELESLKEELQQAKATLKEEEEIISQQEKSEEK  529 (1041)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444444444444444333       44444445555555555555544444444444444444445555554443


Q ss_pred             HHH
Q 008135          309 VER  311 (576)
Q Consensus       309 i~r  311 (576)
                      +.+
T Consensus       530 l~~  532 (1041)
T KOG0243|consen  530 LVD  532 (1041)
T ss_pred             HHH
Confidence            333

>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function

Probab=94.54  E-value=9.9  Score=42.48  Aligned_cols=32  Identities=28%  Similarity=0.348  Sum_probs=16.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135          236 REKLEKEKCVLEEDLNKFNAIIGELNMRKEKM  267 (576)
Q Consensus       236 l~~l~~~~~~L~~D~~K~~~~i~~l~~~~~~~  267 (576)
                      +...+..+.....++..-+..++.+..++...
T Consensus        50 l~~~E~~k~~~l~ELe~akr~veel~~kLe~~   81 (522)
T PF05701_consen   50 LEAAEREKAQALSELESAKRTVEELKLKLEKA   81 (522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444445555555555555555555443

Several sequences in this family are described as being myosin heavy chain-like.

>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function

Probab=94.34  E-value=11  Score=42.15  Aligned_cols=18  Identities=11%  Similarity=0.174  Sum_probs=7.5

Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 008135          262 MRKEKMEKLVEEKEREIG  279 (576)
Q Consensus       262 ~~~~~~e~~l~~l~~Ele  279 (576)
                      .+...+...|..++..++
T Consensus       172 ~kve~L~~Ei~~lke~l~  189 (522)
T PF05701_consen  172 EKVEELSKEIIALKESLE  189 (522)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            334444444444444443

Several sequences in this family are described as being myosin heavy chain-like.

>PF13851 GAS: Growth-arrest specific micro-tubule binding

Probab=94.33  E-value=5.4  Score=38.63  Aligned_cols=150  Identities=13%  Similarity=0.149  Sum_probs=82.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------HHHHHHHHHHHHHHH--h
Q 008135          410 VEKLEELISLQQQSSEMAAKIEGKRKRIDALQFHINEMETQLNLLSKETQEITKRC------AEEAKKMEEDIQTEA--H  481 (576)
Q Consensus       410 ~~~~~e~~~Lq~~l~~l~~~ieek~~~l~~Le~kl~~l~~ql~~lk~e~eee~~~~------~~Ei~kl~eele~~~--~  481 (576)
                      ..+.+++..+...-......+.+...++..|..-+..+..+...+++.+..+....      .+.+..++.++..++  +
T Consensus        30 ksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~e~  109 (201)
T PF13851_consen   30 KSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEKDKQSLQNLKARLKELEKELKDLKWEH  109 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444444444455555555666666666666666666666666666665522      234444555555554  2


Q ss_pred             hhhHHH-HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh
Q 008135          482 NLDMVE-REAVEVLKASESKFQE----AIRQCEEEIQIRALDLFALVDSVSKYKERMESKISKMNKGISETALTVSEAYK  556 (576)
Q Consensus       482 ~~~~~~-~ea~~el~~~~~~~ee----~~~e~eeek~~l~~el~~l~~~i~k~K~~i~~~i~~~~~~~~~~~~~i~~~f~  556 (576)
                      +..... ..+..+.+++..+++.    +.+.+....--|.+.|..+-+.+++--..+.+.+....-|.- ++..|.....
T Consensus       110 evL~qr~~kle~ErdeL~~kf~~~i~evqQk~~~kn~lLEkKl~~l~~~lE~keaqL~evl~~~nldp~-~~~~v~~~l~  188 (201)
T PF13851_consen  110 EVLEQRFEKLEQERDELYRKFESAIQEVQQKTGLKNLLLEKKLQALSEQLEKKEAQLNEVLAAANLDPA-ALSQVSKKLE  188 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH-HHHHHHHHHH
Confidence            221111 2344445555554444    444555566778888888888888887888887777554422 3344444444


Q ss_pred             cccc
Q 008135          557 NSLP  560 (576)
Q Consensus       557 ~~~~  560 (576)
                      +++.
T Consensus       189 ~~l~  192 (201)
T PF13851_consen  189 DVLD  192 (201)
T ss_pred             HHHH
Confidence            4433

>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain

Probab=94.22  E-value=7.5  Score=39.81  Aligned_cols=18  Identities=28%  Similarity=0.355  Sum_probs=9.3

Q ss_pred             HHHHHHHhHHHHHHHHHH
Q 008135          204 KLEKEKENVSEYVEELKK  221 (576)
Q Consensus       204 kl~~~~~~~~~~~~~L~~  221 (576)
                      .+...++.+..+...|..
T Consensus        24 ~l~~~~~sL~qen~~Lk~   41 (310)
T PF09755_consen   24 QLRKRIESLQQENRVLKR   41 (310)
T ss_pred             HHHHHHHHHHHHhHHHHH
Confidence            344455555555555544

>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues

Probab=94.19  E-value=7.6  Score=39.80  Aligned_cols=12  Identities=25%  Similarity=0.429  Sum_probs=6.3

Q ss_pred             HHHHHHHHHHHH
Q 008135          492 EVLKASESKFQE  503 (576)
Q Consensus       492 ~el~~~~~~~ee  503 (576)
                      .++..++.+|.+
T Consensus       276 aEL~elqdkY~E  287 (306)
T PF04849_consen  276 AELQELQDKYAE  287 (306)
T ss_pred             HHHHHHHHHHHH
Confidence            345555555555

HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].

>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]

Probab=94.09  E-value=4.5  Score=36.74  Aligned_cols=75  Identities=19%  Similarity=0.138  Sum_probs=46.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHH
Q 008135          235 EREKLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDV  309 (576)
Q Consensus       235 ~l~~l~~~~~~L~~D~~K~~~~i~~l~~~~~~~e~~l~~l~~Ele~~~~e~~~l~~e~~eL~~~l~~Q~~s~~di  309 (576)
                      .++..+.....+.-|.+.-++.+..++..+..+...+..+..+|.....+...+.++....+.+|..-..+..+.
T Consensus        32 eLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~~~~~~  106 (140)
T PF10473_consen   32 ELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSELESLNSSL  106 (140)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence            344444555556666667777777777777777777777777776666666666666666655554444333333

There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding

>TIGR00634 recN DNA repair protein RecN

Probab=94.07  E-value=13  Score=41.99  Aligned_cols=19  Identities=16%  Similarity=0.249  Sum_probs=10.8

Q ss_pred             hcCCHHHHHHHHHHHHHHH
Q 008135          302 QTINARDVERMRRELQAVE  320 (576)
Q Consensus       302 Q~~s~~di~r~~~Er~~L~  320 (576)
                      -++.+.+-+.+..++..|.
T Consensus       204 ~~l~~~E~e~L~~e~~~L~  222 (563)
T TIGR00634       204 ADLQPGEDEALEAEQQRLS  222 (563)
T ss_pred             CCcCCCcHHHHHHHHHHHh
Confidence            4555666666665555543

All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.

>PF12252 SidE: Dot/Icm substrate protein; InterPro: IPR021014 This entry represents bacterial proteins that are typically between 397 and 1543 amino acids in length including SidE protein in the Dot/Icm pathway of Legionella pneumophila bacteria

Probab=93.84  E-value=18  Score=42.74  Aligned_cols=100  Identities=14%  Similarity=0.295  Sum_probs=49.6

Q ss_pred             HHHHhccCCCChHH------HHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHH-------H
Q 008135          224 SEMEGAMTGPTERE------KLEKEKCVLEEDLNKFNAI------------IGELNMRKEKMEKLVEEKERE-------I  278 (576)
Q Consensus       224 ~~le~l~~~~~~l~------~l~~~~~~L~~D~~K~~~~------------i~~l~~~~~~~e~~l~~l~~E-------l  278 (576)
                      ..|+++.+-|+..+      .|+.++..+..|++-++..            ....+.-+....++|..++..       .
T Consensus      1047 ~AL~ALn~IPSdKEms~Is~eLReQIq~~KQ~LesLQRAV~TPVvtd~eKvr~rYe~LI~~iTKrIt~LEk~k~~~l~~i 1126 (1439)
T PF12252_consen 1047 GALQALNNIPSDKEMSKISSELREQIQSVKQDLESLQRAVVTPVVTDAEKVRVRYETLITDITKRITDLEKAKLDNLDSI 1126 (1439)
T ss_pred             HHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHHHHHHhhcccccccHHHHHHHHHHHHHHHHHHHHHHhccccccHHHH
Confidence            33555555665433      7888888888887777732            222333344444444444321       1


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-----hcCCHHHHHHHHHHHHHHHHHH
Q 008135          279 GKKVEEHKRICEENEEFKKRVKL-----QTINARDVERMRRELQAVERDI  323 (576)
Q Consensus       279 e~~~~e~~~l~~e~~eL~~~l~~-----Q~~s~~di~r~~~Er~~L~~~l  323 (576)
                      ...-..+..|++|+.=|+..-..     ..+.=.||+.+...++.+...|
T Consensus      1127 kK~ia~lnnlqqElklLRnEK~Rmh~~~dkVDFSDIEkLE~qLq~~~~kL 1176 (1439)
T PF12252_consen 1127 KKAIANLNNLQQELKLLRNEKIRMHSGTDKVDFSDIEKLEKQLQVIHTKL 1176 (1439)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHhhccCCCcccHHHHHHHHHHHHHhhhhh
Confidence            11113334444444444433222     2344456666666665555444

There is little literature describing the family.

>PF15397 DUF4618: Domain of unknown function (DUF4618)

Probab=93.80  E-value=8.1  Score=38.70  Aligned_cols=69  Identities=22%  Similarity=0.281  Sum_probs=49.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHh
Q 008135          397 ALESFADDVKRSSVEKLEELISLQQQSSEMAAKIEGKRKRIDALQF-----------HINEMETQLNLLSKETQEITKRC  465 (576)
Q Consensus       397 ~L~~l~~ei~~~~~~~~~e~~~Lq~~l~~l~~~ieek~~~l~~Le~-----------kl~~l~~ql~~lk~e~eee~~~~  465 (576)
                      .|..+..++...-......+..|+.+++++...|.....++..|..           +|..|..+++.++.+-+++....
T Consensus        64 ~l~~ak~eLqe~eek~e~~l~~Lq~ql~~l~akI~k~~~el~~L~TYkD~EYPvK~vqIa~L~rqlq~lk~~qqdEldel  143 (258)
T PF15397_consen   64 QLQQAKAELQEWEEKEESKLSKLQQQLEQLDAKIQKTQEELNFLSTYKDHEYPVKAVQIANLVRQLQQLKDSQQDELDEL  143 (258)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455566666666666677888999999999999998888888765           55567777777766666554433

>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=93.76  E-value=1.5  Score=42.15  Aligned_cols=36  Identities=17%  Similarity=0.111  Sum_probs=21.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135          492 EVLKASESKFQEAIRQCEEEIQIRALDLFALVDSVSKYKE  531 (576)
Q Consensus       492 ~el~~~~~~~ee~~~e~eeek~~l~~el~~l~~~i~k~K~  531 (576)
                      +++..++..+.-+.    ++.+.+..+=..|+++....|.
T Consensus       151 DE~~~L~l~~~~~e----~k~~~l~~En~~Lv~Rwm~~k~  186 (194)
T PF08614_consen  151 DELQALQLQLNMLE----EKLRKLEEENRELVERWMQRKA  186 (194)
T ss_dssp             HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Confidence            45555554444444    5666677777777776666654

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.

>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=93.70  E-value=1.4  Score=45.85  Aligned_cols=37  Identities=24%  Similarity=0.379  Sum_probs=17.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135          265 EKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKL  301 (576)
Q Consensus       265 ~~~e~~l~~l~~Ele~~~~e~~~l~~e~~eL~~~l~~  301 (576)
                      ..++.++..++.|.+....+++.++.+.++|..++..
T Consensus        46 ~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~   82 (314)
T PF04111_consen   46 EELEEELEKLEQEEEELLQELEELEKEREELDQELEE   82 (314)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444444444445555555555555444433

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.

>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]

Probab=93.65  E-value=4.8  Score=39.12  Aligned_cols=63  Identities=24%  Similarity=0.348  Sum_probs=38.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135          239 LEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKL  301 (576)
Q Consensus       239 l~~~~~~L~~D~~K~~~~i~~l~~~~~~~e~~l~~l~~Ele~~~~e~~~l~~e~~eL~~~l~~  301 (576)
                      +++++..+.+|.++++.-.+..+.+.+..++....+++..+....|...+-++...|+.+|..
T Consensus       149 ~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i~~  211 (216)
T KOG1962|consen  149 LEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQIES  211 (216)
T ss_pred             hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhc
Confidence            556666666666666666655555555555555555555555555666666666666665543

>TIGR02680 conserved hypothetical protein TIGR02680

Probab=93.29  E-value=29  Score=43.51  Aligned_cols=43  Identities=9%  Similarity=0.093  Sum_probs=19.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 008135          263 RKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTIN  305 (576)
Q Consensus       263 ~~~~~e~~l~~l~~Ele~~~~e~~~l~~e~~eL~~~l~~Q~~s  305 (576)
                      .+......+...+.++...+.++..++.+...++.++..-.-|
T Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~l~~~~~~l~~~  326 (1353)
T TIGR02680       284 DLGRARDELETAREEERELDARTEALEREADALRTRLEALQGS  326 (1353)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            3333444444444444444444444444444454444444333

Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.

>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=93.25  E-value=3.2  Score=41.05  Aligned_cols=52  Identities=21%  Similarity=0.318  Sum_probs=24.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 008135          307 RDVERMRRELQAVERDIADAENARNEWESKTWDLDSKLGRKFKELEALSMEC  358 (576)
Q Consensus       307 ~di~r~~~Er~~L~~~l~~~e~~~~~l~~~~~~~e~~l~~~~e~le~l~~~y  358 (576)
                      +++..|+..+..|+..|..++..+......+..+.-.|....+++..+..+|
T Consensus        53 eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~e~  104 (230)
T PF10146_consen   53 EELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELRKEY  104 (230)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444445555555555555444444444444444555554444443

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.

>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily

Probab=93.21  E-value=16  Score=40.37  Aligned_cols=29  Identities=14%  Similarity=0.303  Sum_probs=12.5

Q ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135          429 KIEGKRKRIDALQFHINEMETQLNLLSKE  457 (576)
Q Consensus       429 ~ieek~~~l~~Le~kl~~l~~ql~~lk~e  457 (576)
                      .+.+.+.+++.++.++..+..+++.++.+
T Consensus       318 ~l~~~~~~~~~l~~~~~~l~~~~~~~~~~  346 (498)
T TIGR03007       318 ELAEAEAEIASLEARVAELTARIERLESL  346 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33334444444444444444444444433

Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.

>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]

Probab=93.20  E-value=3.3  Score=40.63  Aligned_cols=28  Identities=11%  Similarity=0.268  Sum_probs=13.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCHHHHH
Q 008135          283 EEHKRICEENEEFKKRVKLQTINARDVE  310 (576)
Q Consensus       283 ~e~~~l~~e~~eL~~~l~~Q~~s~~di~  310 (576)
                      .-+..|++.+..|...-.+.-++.+|++
T Consensus       112 kyiReLEQaNDdLErakRati~sleDfe  139 (333)
T KOG1853|consen  112 KYIRELEQANDDLERAKRATIYSLEDFE  139 (333)
T ss_pred             HHHHHHHHhccHHHHhhhhhhhhHHHHH
Confidence            3344444444455444445555555553

>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=93.18  E-value=10  Score=38.06  Aligned_cols=60  Identities=20%  Similarity=0.317  Sum_probs=28.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135          242 EKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKL  301 (576)
Q Consensus       242 ~~~~L~~D~~K~~~~i~~l~~~~~~~e~~l~~l~~Ele~~~~e~~~l~~e~~eL~~~l~~  301 (576)
                      ++..++.+...++.-|+.+...+.++..++.++++++.....+++.++.++.++...|..
T Consensus        39 ~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~   98 (265)
T COG3883          39 KLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVE   98 (265)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333344444444444444444444444444444444444444555555555555544433

>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=93.08  E-value=11  Score=37.95  Aligned_cols=58  Identities=14%  Similarity=0.337  Sum_probs=24.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHH
Q 008135          267 MEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRRELQAVERDIADAE  327 (576)
Q Consensus       267 ~e~~l~~l~~Ele~~~~e~~~l~~e~~eL~~~l~~Q~~s~~di~r~~~Er~~L~~~l~~~e  327 (576)
                      -+.++.+++.+......+++.|...+.++...++..   .+++++.+.++..|+.+|+.++
T Consensus        36 ~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~---~~~i~~~~~eik~l~~eI~~~~   93 (265)
T COG3883          36 QDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDEL---QKEIDQSKAEIKKLQKEIAELK   93 (265)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444333333344444444443333322   2344445555555555544443

>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms

Probab=93.00  E-value=0.028  Score=65.08  Aligned_cols=14  Identities=14%  Similarity=0.209  Sum_probs=8.0

Q ss_pred             HHHHHHHHHHHhhh
Q 008135           61 QSSAIRAINAHLSS   74 (576)
Q Consensus        61 q~~~~~~i~~fL~~   74 (576)
                      -..+++.|..|+.+
T Consensus        72 Lk~l~~~i~~yy~e   85 (713)
T PF05622_consen   72 LKKLLRNIKSYYQE   85 (713)
T ss_dssp             HHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHH
Confidence            34566666666643

The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.

>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana

Probab=92.88  E-value=9.2  Score=36.67  Aligned_cols=44  Identities=9%  Similarity=0.035  Sum_probs=28.1

Q ss_pred             HHHHHHHHHHHHHhhhhhhCCcccccchHHHHHHHHHHHHH-HcCCC
Q 008135          146 LALIHWLVQIASYNYHLTTNSKAFVENNSMYMYASDSYLNY-IEGKD  191 (576)
Q Consensus       146 l~~L~WLv~l~~~~~~~~~~~~~~~~~~~~~~y~~~~Y~~f-l~g~d  191 (576)
                      ..+++|++-++...+.+....-  +.....|....++...+ .+|=|
T Consensus        43 g~A~Glm~~f~~l~e~v~~l~i--dd~~~~f~~~~~tl~~LE~~GFn   87 (190)
T PF05266_consen   43 GMAVGLMVTFANLAEKVKKLQI--DDSRSSFESLMKTLSELEEHGFN   87 (190)
T ss_pred             HHHHHHHHHHHHHHHHHHHccc--CCcHHHHHHHHHHHHHHHHcCCc
Confidence            3677888888877776665432  22355677777888777 44433

>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT)

Probab=92.72  E-value=7.2  Score=35.02  Aligned_cols=108  Identities=15%  Similarity=0.221  Sum_probs=51.8

Q ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH---HHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 008135          418 SLQQQSSEMAAKIEGKRKRIDALQFHINEMETQLNLLSKETQEITKRCAE---EAKKMEEDIQTEAHNLDMVEREAVEVL  494 (576)
Q Consensus       418 ~Lq~~l~~l~~~ieek~~~l~~Le~kl~~l~~ql~~lk~e~eee~~~~~~---Ei~kl~eele~~~~~~~~~~~ea~~el  494 (576)
                      .++.++..+...+.+....+..+...+.............++.+....+.   .+..++.++...+..+.    +...+.
T Consensus         7 ~l~~e~~~~~~~~~~~~~~~~~~~~dl~~q~~~a~~Aq~~YE~El~~Ha~~~~~L~~lr~e~~~~~~~~~----~l~~~~   82 (132)
T PF07926_consen    7 SLQSELQRLKEQEEDAEEQLQSLREDLESQAKIAQEAQQKYERELVKHAEDIKELQQLREELQELQQEIN----ELKAEA   82 (132)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH----HHHHHH
Confidence            34444444444444444444444444444444444444444444443333   44444555554432222    222334


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135          495 KASESKFQEAIRQCEEEIQIRALDLFALVDSVSKY  529 (576)
Q Consensus       495 ~~~~~~~ee~~~e~eeek~~l~~el~~l~~~i~k~  529 (576)
                      ..++..+.......++++..+..++..+..++...
T Consensus        83 ~~a~~~l~~~e~sw~~qk~~le~e~~~~~~r~~dL  117 (132)
T PF07926_consen   83 ESAKAELEESEASWEEQKEQLEKELSELEQRIEDL  117 (132)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence            44455555555555566666666666666555433

These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore

>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]

Probab=92.59  E-value=7.9  Score=35.16  Aligned_cols=6  Identities=50%  Similarity=0.866  Sum_probs=2.2

Q ss_pred             HHHHHH
Q 008135          246 LEEDLN  251 (576)
Q Consensus       246 L~~D~~  251 (576)
                      |+.|++
T Consensus        29 LEreLe   34 (140)
T PF10473_consen   29 LERELE   34 (140)
T ss_pred             HHHHHH
Confidence            333333

There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding

>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]

Probab=92.39  E-value=8  Score=41.28  Aligned_cols=45  Identities=13%  Similarity=0.189  Sum_probs=24.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135          236 REKLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGK  280 (576)
Q Consensus       236 l~~l~~~~~~L~~D~~K~~~~i~~l~~~~~~~e~~l~~l~~Ele~  280 (576)
                      .+.+-.+...|+.|.....+....++.+..+++.++..+.+|+..
T Consensus       356 ~e~~~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~  400 (493)
T KOG0804|consen  356 YELLITEADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELKE  400 (493)
T ss_pred             HHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333444445555555555555555555666666666665555543

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=92.38  E-value=26  Score=40.67  Aligned_cols=67  Identities=13%  Similarity=0.125  Sum_probs=31.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 008135          487 EREAVEVLKASESKFQEAIRQCEEEIQIRALDLFALVD----------SVSKYKERMESKISKMNKGISETALTVSE  553 (576)
Q Consensus       487 ~~ea~~el~~~~~~~ee~~~e~eeek~~l~~el~~l~~----------~i~k~K~~i~~~i~~~~~~~~~~~~~i~~  553 (576)
                      |.+-.++|+..+.+++.+...++.-+.++...-..+..          .=...+..|.+.|.++.+.+-+.+..|++
T Consensus       634 Er~~~~EL~~~~~~l~~l~~si~~lk~k~~~Q~~~i~~~~~~~~~s~~L~~~Q~~~I~~iL~~~~~~I~~~v~~ik~  710 (717)
T PF10168_consen  634 EREFKKELERMKDQLQDLKASIEQLKKKLDYQQRQIESQKSPKKKSIVLSESQKRTIKEILKQQGEEIDELVKQIKN  710 (717)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444455555555555444444444444332222110          01455666666666665555555555543

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=92.22  E-value=26  Score=40.28  Aligned_cols=50  Identities=24%  Similarity=0.305  Sum_probs=28.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135          239 LEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRI  288 (576)
Q Consensus       239 l~~~~~~L~~D~~K~~~~i~~l~~~~~~~e~~l~~l~~Ele~~~~e~~~l  288 (576)
                      ..+....+..-+.|+...|..++..++.+.+...+|+.+.+....+....
T Consensus       648 ~~k~~e~l~~~~~kyK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~  697 (970)
T KOG0946|consen  648 AEKYHEELDDIQQKYKGLIRELDYQIENLKQMEKELQVENEELEEEVQDF  697 (970)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44445556666677777777776666666655555555544444444333

>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch

Probab=91.89  E-value=8.8  Score=35.19  Aligned_cols=31  Identities=13%  Similarity=0.304  Sum_probs=11.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135          248 EDLNKFNAIIGELNMRKEKMEKLVEEKEREI  278 (576)
Q Consensus       248 ~D~~K~~~~i~~l~~~~~~~e~~l~~l~~El  278 (576)
                      .++.+++.-+...+..+..++.+...++..+
T Consensus        73 ~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~  103 (151)
T PF11559_consen   73 NDVERLKEQLEELERELASAEEKERQLQKQL  103 (151)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333333333333333333

pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.

>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []

Probab=91.77  E-value=5.6  Score=32.39  Aligned_cols=73  Identities=14%  Similarity=0.275  Sum_probs=50.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 008135          399 ESFADDVKRSSVEKLEELISLQQQSSEMAAKIEGKRKRIDALQFHINEMETQLNLLSKETQEITKRCAEEAKKMEEDIQT  478 (576)
Q Consensus       399 ~~l~~ei~~~~~~~~~e~~~Lq~~l~~l~~~ieek~~~l~~Le~kl~~l~~ql~~lk~e~eee~~~~~~Ei~kl~eele~  478 (576)
                      .+|.+.|.........+......+.+++...+...-.++..+..++-+|+.....+++.++++       |..|+.+|+.
T Consensus         3 ~elLd~ir~Ef~~~~~e~~~~k~~~~e~e~ki~~Qi~Em~~ir~~v~eLE~~h~kmK~~YEeE-------I~rLr~eLe~   75 (79)
T PF08581_consen    3 NELLDAIRQEFENLSQEANSYKHQKDEYEHKINSQIQEMQQIRQKVYELEQAHRKMKQQYEEE-------IARLRRELEQ   75 (79)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHCH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHh
Confidence            445555555555555566666777777777777777888888888888888888888877766       5555555544

; PDB: 3VP9_B 3VP8_B.

>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]

Probab=91.59  E-value=37  Score=40.74  Aligned_cols=27  Identities=15%  Similarity=0.285  Sum_probs=10.4

Q ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 008135          319 VERDIADAENARNEWESKTWDLDSKLG  345 (576)
Q Consensus       319 L~~~l~~~e~~~~~l~~~~~~~e~~l~  345 (576)
                      +...+..+...+........+....+.
T Consensus       401 ~~~~~~~~~~~~~e~~~~~~~~~~~l~  427 (908)
T COG0419         401 LSAALEEIQEELEELEKELEELERELE  427 (908)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333444444443333333333

>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]

Probab=91.39  E-value=18  Score=40.82  Aligned_cols=43  Identities=26%  Similarity=0.395  Sum_probs=21.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 008135          413 LEELISLQQQSSEMAAKIEGKRKRIDALQFHINEMETQLNLLS  455 (576)
Q Consensus       413 ~~e~~~Lq~~l~~l~~~ieek~~~l~~Le~kl~~l~~ql~~lk  455 (576)
                      .+.+..|.++++.++..+++.+..-..|..-+..|..++++++
T Consensus       215 le~kn~L~~e~~s~kk~l~~~~~~k~rl~~d~E~Lr~e~~qL~  257 (916)
T KOG0249|consen  215 LEDKNRLEQELESVKKQLEEMRHDKDKLRTDIEDLRGELDQLR  257 (916)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            3344455555555555555544444444444445545555444

>PRK10869 recombination and repair protein; Provisional

Probab=91.37  E-value=29  Score=39.09  Aligned_cols=43  Identities=16%  Similarity=0.227  Sum_probs=29.3

Q ss_pred             HHHHHHhHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHH
Q 008135          205 LEKEKENVSEYVEELKKKVSEMEGAMTGPTEREKLEKEKCVLE  247 (576)
Q Consensus       205 l~~~~~~~~~~~~~L~~~~~~le~l~~~~~~l~~l~~~~~~L~  247 (576)
                      +........+++..|+-.+.+++.+.-.|+..+.|+.+...|.
T Consensus       176 l~~~~~~~~~~~d~l~fql~Ei~~~~l~~gE~eeL~~e~~~L~  218 (553)
T PRK10869        176 HQQQSQERAARKQLLQYQLKELNEFAPQPGEFEQIDEEYKRLA  218 (553)
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHH
Confidence            3344445566677778888888886667777777777666544

>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences

Probab=91.32  E-value=2.7  Score=39.43  Aligned_cols=35  Identities=11%  Similarity=0.354  Sum_probs=20.7

Q ss_pred             HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 008135          286 KRICEENEEFKKRVKLQTINARDVERMRRELQAVERD  322 (576)
Q Consensus       286 ~~l~~e~~eL~~~l~~Q~~s~~di~r~~~Er~~L~~~  322 (576)
                      ..++..+..|+.  ....+|++++.++..+...+.+.
T Consensus       126 ~~l~~kL~~l~~--~~~~vs~ee~~~~~~~~~~~~k~  160 (169)
T PF07106_consen  126 EELEEKLEKLRS--GSKPVSPEEKEKLEKEYKKWRKE  160 (169)
T ss_pred             HHHHHHHHHHHh--CCCCCCHHHHHHHHHHHHHHHHH
Confidence            334444444544  34557888888887776655443

TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].

>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function

Probab=91.27  E-value=20  Score=37.10  Aligned_cols=83  Identities=11%  Similarity=0.104  Sum_probs=48.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135          257 IGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEEN----EEFKKRVKLQTINARDVERMRRELQAVERDIADAENARNE  332 (576)
Q Consensus       257 i~~l~~~~~~~e~~l~~l~~Ele~~~~e~~~l~~e~----~eL~~~l~~Q~~s~~di~r~~~Er~~L~~~l~~~e~~~~~  332 (576)
                      ++.+..++..|+..+..+-.|.+....+....+...    .+|...+..-+-.+-||+-+-.|...|...|..++...+-
T Consensus       135 LEk~~~q~~qLe~d~qs~lDEkeEl~~ERD~yk~K~~RLN~ELn~~L~g~~~rivDIDaLi~ENRyL~erl~q~qeE~~l  214 (319)
T PF09789_consen  135 LEKLREQIEQLERDLQSLLDEKEELVTERDAYKCKAHRLNHELNYILNGDENRIVDIDALIMENRYLKERLKQLQEEKEL  214 (319)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444555555555555555555555544333333    3344445554556668888888888888888777666655


Q ss_pred             HHHhhhH
Q 008135          333 WESKTWD  339 (576)
Q Consensus       333 l~~~~~~  339 (576)
                      +.+.+.-
T Consensus       215 ~k~~i~K  221 (319)
T PF09789_consen  215 LKQTINK  221 (319)
T ss_pred             HHHHHHH
Confidence            5554433

>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=91.26  E-value=3.4  Score=39.75  Aligned_cols=7  Identities=43%  Similarity=0.805  Sum_probs=0.0

Q ss_pred             HHHHHHH
Q 008135          246 LEEDLNK  252 (576)
Q Consensus       246 L~~D~~K  252 (576)
                      ++.|+..
T Consensus        79 l~~ELae   85 (194)
T PF08614_consen   79 LQEELAE   85 (194)
T ss_dssp             -------
T ss_pred             ccccccc
Confidence            3333333

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.

>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation

Probab=91.15  E-value=5.8  Score=31.68  Aligned_cols=60  Identities=18%  Similarity=0.279  Sum_probs=34.9

Q ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135          200 GFIEKLEKEKENVSEYVEELKKKVSEMEGAMTGPTEREKLEKEKCVLEEDLNKFNAIIGELNMRKE  265 (576)
Q Consensus       200 ~~~~kl~~~~~~~~~~~~~L~~~~~~le~l~~~~~~l~~l~~~~~~L~~D~~K~~~~i~~l~~~~~  265 (576)
                      +..++|...+....+.+..|+.++.+|..      .-..+..++..|.....+++.-...++.++.
T Consensus         4 E~l~~LE~ki~~aveti~~Lq~e~eeLke------~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~   63 (72)
T PF06005_consen    4 ELLEQLEEKIQQAVETIALLQMENEELKE------KNNELKEENEELKEENEQLKQERNAWQERLR   63 (72)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34467777888888888888887777764      2333444444444444444444444444433

It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.

>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease

Probab=91.14  E-value=15  Score=35.37  Aligned_cols=59  Identities=25%  Similarity=0.364  Sum_probs=25.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135          273 EKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRRELQAVERDIADAENARNEW  333 (576)
Q Consensus       273 ~l~~Ele~~~~e~~~l~~e~~eL~~~l~~Q~~s~~di~r~~~Er~~L~~~l~~~e~~~~~l  333 (576)
                      .++..+.....++..+..++..|+.-+++.++-  +.+.+..+...+...+...+..+..|
T Consensus        86 ~~~~klk~~~~el~k~~~~l~~L~~L~~dknL~--eReeL~~kL~~~~~~l~~~~~ki~~L  144 (194)
T PF15619_consen   86 ELERKLKDKDEELLKTKDELKHLKKLSEDKNLA--EREELQRKLSQLEQKLQEKEKKIQEL  144 (194)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCch--hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333344444455555555555555443  33444444444444444333333333

>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []

Probab=91.12  E-value=18  Score=36.21  Aligned_cols=102  Identities=20%  Similarity=0.265  Sum_probs=48.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 008135          243 KCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRRELQAVERD  322 (576)
Q Consensus       243 ~~~L~~D~~K~~~~i~~l~~~~~~~e~~l~~l~~Ele~~~~e~~~l~~e~~eL~~~l~~Q~~s~~di~r~~~Er~~L~~~  322 (576)
                      +..|+..++|+..-..+-+-.++.++..+..-+...+....+...|+.|+..|...          -+.+-+-+++|..+
T Consensus        20 IqelE~QldkLkKE~qQrQfQleSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~----------c~~lek~rqKlshd   89 (307)
T PF10481_consen   20 IQELEQQLDKLKKERQQRQFQLESLEAALQKQKQKVEEEKNEYSALKRENQSLMES----------CENLEKTRQKLSHD   89 (307)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHH----------HHHHHHHHHHhhHH
Confidence            34444444444444444444444444444444444444555556666666666443          33333344444444


Q ss_pred             H-------HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 008135          323 I-------ADAENARNEWESKTWDLDSKLGRKFKELEAL  354 (576)
Q Consensus       323 l-------~~~e~~~~~l~~~~~~~e~~l~~~~e~le~l  354 (576)
                      +       .-++.++......+..++..+.+...+||+.
T Consensus        90 lq~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~KsELErs  128 (307)
T PF10481_consen   90 LQVKESQVNFLEGQLNSCKKQIEKLEQELKRCKSELERS  128 (307)
T ss_pred             HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3       3344444444444444455455555555544

Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].

>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]

Probab=91.03  E-value=28  Score=38.26  Aligned_cols=55  Identities=24%  Similarity=0.219  Sum_probs=35.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHH
Q 008135          256 IIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVE  310 (576)
Q Consensus       256 ~i~~l~~~~~~~e~~l~~l~~Ele~~~~e~~~l~~e~~eL~~~l~~Q~~s~~di~  310 (576)
                      +++.-.++-..+-.+|.+++.||...+.++...+.|++++......-+-+-++++
T Consensus        94 LLqESaakE~~yl~kI~eleneLKq~r~el~~~q~E~erl~~~~sd~~e~~~~~E  148 (772)
T KOG0999|consen   94 LLQESAAKEEYYLQKILELENELKQLRQELTNVQEENERLEKVHSDLKESNAAVE  148 (772)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhH
Confidence            3444444555566777777777777777777777777777776666555555544

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=91.02  E-value=8.3  Score=44.66  Aligned_cols=25  Identities=16%  Similarity=0.244  Sum_probs=14.7

Q ss_pred             cchhhhhchHHHHHHHHHHHHHHHH
Q 008135          386 MGVDYKSTLKPALESFADDVKRSSV  410 (576)
Q Consensus       386 ~~~~~k~~ik~~L~~l~~ei~~~~~  410 (576)
                      ++..-...|+..|.+...+|.+.+.
T Consensus       682 L~~~Q~~~I~~iL~~~~~~I~~~v~  706 (717)
T PF10168_consen  682 LSESQKRTIKEILKQQGEEIDELVK  706 (717)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4555556677776666665554333

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>TIGR01005 eps_transp_fam exopolysaccharide transport protein family

Probab=90.99  E-value=38  Score=39.70  Aligned_cols=14  Identities=7%  Similarity=0.318  Sum_probs=7.1

Q ss_pred             HHHHHHHHHHHHHH
Q 008135          492 EVLKASESKFQEAI  505 (576)
Q Consensus       492 ~el~~~~~~~ee~~  505 (576)
                      +.|...-.+++++.
T Consensus       390 ~~Y~~ll~r~~e~~  403 (754)
T TIGR01005       390 QLYESYLTNYRQAA  403 (754)
T ss_pred             HHHHHHHHHHHHHH
Confidence            44455555555544

The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.

>TIGR00634 recN DNA repair protein RecN

Probab=90.72  E-value=33  Score=38.67  Aligned_cols=10  Identities=30%  Similarity=0.321  Sum_probs=4.2

Q ss_pred             HHHHHHHHHH
Q 008135           91 DITDVIKFLI  100 (576)
Q Consensus        91 ~f~~i~~~L~  100 (576)
                      .+.+.+.|++
T Consensus        37 ~ll~al~~~~   46 (563)
T TIGR00634        37 MIIDALSLLG   46 (563)
T ss_pred             HHHHHHHHHh
Confidence            3444444443

All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.

>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules

Probab=90.59  E-value=18  Score=35.23  Aligned_cols=32  Identities=9%  Similarity=0.289  Sum_probs=21.2

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008135          305 NARDVERMRRELQAVERDIADAENARNEWESK  336 (576)
Q Consensus       305 s~~di~r~~~Er~~L~~~l~~~e~~~~~l~~~  336 (576)
                      +...+.++..+++.+..++..++.....+-.+
T Consensus        67 ~~~~i~~~~~erdq~~~dL~s~E~sfsdl~~r   98 (207)
T PF05010_consen   67 SEAEIQKLLKERDQAYADLNSLEKSFSDLHKR   98 (207)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHH
Confidence            45567777777777777777776666544433

The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].

>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function

Probab=90.55  E-value=24  Score=36.62  Aligned_cols=138  Identities=14%  Similarity=0.203  Sum_probs=74.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhHHHHHHHHHHHHHHHhhhhHHHHH
Q 008135          411 EKLEELISLQQQSSEMAAKIEGKRKRIDALQFHINEMETQLNLLSKETQ-EITKRCAEEAKKMEEDIQTEAHNLDMVERE  489 (576)
Q Consensus       411 ~~~~e~~~Lq~~l~~l~~~ieek~~~l~~Le~kl~~l~~ql~~lk~e~e-ee~~~~~~Ei~kl~eele~~~~~~~~~~~e  489 (576)
                      +..+++..|+.++..+...+.+...++..|..++............... .+...+-.+++++...++.+..+++++..|
T Consensus        76 ~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~~~~~~~ere~lV~qLEk~~~q~~qLe~d~qs~lDE  155 (319)
T PF09789_consen   76 ESREQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQRVGDEGIGARHFPHEREDLVEQLEKLREQIEQLERDLQSLLDE  155 (319)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhhhhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4445666777888888888888888888888887766554433221110 222344445556666666655555544322


Q ss_pred             HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh
Q 008135          490 AVEVLKASESKFQEAIRQ---CEEEIQIRALDLFALV----------DSVSKYKERMESKISKMNKGISETALTVSEAYK  556 (576)
Q Consensus       490 a~~el~~~~~~~ee~~~e---~eeek~~l~~el~~l~----------~~i~k~K~~i~~~i~~~~~~~~~~~~~i~~~f~  556 (576)
                      -           +++..+   |-.....|..+|.-++          |.+-.-.-.++..|..+.++.--+...| ..||
T Consensus       156 k-----------eEl~~ERD~yk~K~~RLN~ELn~~L~g~~~rivDIDaLi~ENRyL~erl~q~qeE~~l~k~~i-~KYK  223 (319)
T PF09789_consen  156 K-----------EELVTERDAYKCKAHRLNHELNYILNGDENRIVDIDALIMENRYLKERLKQLQEEKELLKQTI-NKYK  223 (319)
T ss_pred             H-----------HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence            1           122221   1133455555665555          4443334456666666655544444444 4566


Q ss_pred             cccc
Q 008135          557 NSLP  560 (576)
Q Consensus       557 ~~~~  560 (576)
                      ..+.
T Consensus       224 ~~le  227 (319)
T PF09789_consen  224 SALE  227 (319)
T ss_pred             HHHH
Confidence            6666

>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins

Probab=90.52  E-value=36  Score=38.66  Aligned_cols=103  Identities=15%  Similarity=0.138  Sum_probs=52.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhcCCHHHHHHH
Q 008135          240 EKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEH-------KRICEENEEFKKRVKLQTINARDVERM  312 (576)
Q Consensus       240 ~~~~~~L~~D~~K~~~~i~~l~~~~~~~e~~l~~l~~Ele~~~~e~-------~~l~~e~~eL~~~l~~Q~~s~~di~r~  312 (576)
                      ......|.++...++.-++.++.+.....+.+...+.|.+....++       +.-..-...|++=|.+|.-+-.--..-
T Consensus       161 q~~l~sL~~k~~~Le~~L~~le~~r~~e~~~La~~q~e~d~L~~qLsk~~~~le~q~tlv~~LR~YvGeq~p~~~~~~~w  240 (739)
T PF07111_consen  161 QEALASLTSKAEELEKSLESLETRRAGEAKELAEAQREADLLREQLSKTQEELEAQVTLVEQLRKYVGEQVPPEVHSQAW  240 (739)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhCCcccccHHH
Confidence            3344444444444444444444444333333333333333333222       222223445555555554332222334


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 008135          313 RRELQAVERDIADAENARNEWESKTWDLDS  342 (576)
Q Consensus       313 ~~Er~~L~~~l~~~e~~~~~l~~~~~~~e~  342 (576)
                      +.|+..|..++..++..++.|.....=+.+
T Consensus       241 e~Er~~L~~tVq~L~edR~~L~~T~ELLqV  270 (739)
T PF07111_consen  241 EPEREELLETVQHLQEDRDALQATAELLQV  270 (739)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            577888888888888877777666544444

The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm

>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease

Probab=90.52  E-value=17  Score=34.97  Aligned_cols=83  Identities=14%  Similarity=0.297  Sum_probs=40.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 008135          236 REKLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRRE  315 (576)
Q Consensus       236 l~~l~~~~~~L~~D~~K~~~~i~~l~~~~~~~e~~l~~l~~Ele~~~~e~~~l~~e~~eL~~~l~~Q~~s~~di~r~~~E  315 (576)
                      ++.+..++..|..=-..-...+...+..-..+++.|....+|+......+...+.....+...+...+   +++.+.+.+
T Consensus        28 l~~l~~ENk~Lk~lq~Rq~kAL~k~e~~e~~Lpqll~~h~eEvr~Lr~~LR~~q~~~r~~~~klk~~~---~el~k~~~~  104 (194)
T PF15619_consen   28 LQELRKENKTLKQLQKRQEKALQKYEDTEAELPQLLQRHNEEVRVLRERLRKSQEQERELERKLKDKD---EELLKTKDE  104 (194)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
Confidence            33344444444332222222344444444555666666666666666666666666666655554432   234444444


Q ss_pred             HHHHHH
Q 008135          316 LQAVER  321 (576)
Q Consensus       316 r~~L~~  321 (576)
                      ...|.+
T Consensus       105 l~~L~~  110 (194)
T PF15619_consen  105 LKHLKK  110 (194)
T ss_pred             HHHHHH
Confidence            444443

>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins

Probab=90.37  E-value=3.4  Score=48.12  Aligned_cols=6  Identities=0%  Similarity=-0.341  Sum_probs=0.0

Q ss_pred             CCCCCC
Q 008135           15 QPTPDL   20 (576)
Q Consensus        15 ~~~~~~   20 (576)
                      ||.++|
T Consensus        23 ~~~~~~   28 (722)
T PF05557_consen   23 PNNFIF   28 (722)
T ss_dssp             ------
T ss_pred             cccccc
Confidence            333333

The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.

>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex

Probab=90.23  E-value=37  Score=38.38  Aligned_cols=116  Identities=18%  Similarity=0.214  Sum_probs=83.3

Q ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 008135          419 LQQQSSEMAAKIEGKRKRIDALQFHINEMETQLNLLSKETQEITKRCAEEAKKMEEDIQTEAHNLDMVEREAVEVLKASE  498 (576)
Q Consensus       419 Lq~~l~~l~~~ieek~~~l~~Le~kl~~l~~ql~~lk~e~eee~~~~~~Ei~kl~eele~~~~~~~~~~~ea~~el~~~~  498 (576)
                      ..+..+.+...|+++..--+.|-..+..+....++.-.--.+-..+|...|..|..-|+.-+++...+..+-..+|..-.
T Consensus       652 ~eE~~~~~~keie~K~~~e~~L~~EveK~k~~a~EAvK~q~EtdlrCQhKIAeMVALMEKHK~qYDkiVEEkDaEL~~~k  731 (786)
T PF05483_consen  652 HEEETDKYQKEIESKSISEEELLGEVEKAKLTADEAVKLQEETDLRCQHKIAEMVALMEKHKHQYDKIVEEKDAELGLYK  731 (786)
T ss_pred             HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence            34456666777888888888888888888888888877777777899999999999999988888777666666666655


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135          499 SKFQEAIRQCEEEIQIRALDLFALVDSVSKYKERMESKIS  538 (576)
Q Consensus       499 ~~~ee~~~e~eeek~~l~~el~~l~~~i~k~K~~i~~~i~  538 (576)
                      .+=++..    .-+..|.-+|..+-.-+...|..+.....
T Consensus       732 ~KE~E~~----s~k~sLE~ELs~lk~el~slK~QLk~e~~  767 (786)
T PF05483_consen  732 KKEQEQS----SHKASLELELSNLKNELSSLKKQLKTERT  767 (786)
T ss_pred             HHHHHHH----HHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence            5555544    45666666666666655555554444443

Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex

>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []

Probab=90.12  E-value=13  Score=32.90  Aligned_cols=43  Identities=16%  Similarity=0.271  Sum_probs=22.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135          236 REKLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREI  278 (576)
Q Consensus       236 l~~l~~~~~~L~~D~~K~~~~i~~l~~~~~~~e~~l~~l~~El  278 (576)
                      ++.+...+..+.+.+..++.-+..++.....+...|..+-.+.
T Consensus        18 ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~   60 (120)
T PF12325_consen   18 VERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEEN   60 (120)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444455555555555555555555555555555555544443

The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].

>TIGR01005 eps_transp_fam exopolysaccharide transport protein family

Probab=89.91  E-value=46  Score=38.98  Aligned_cols=34  Identities=12%  Similarity=0.145  Sum_probs=20.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008135          269 KLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQ  302 (576)
Q Consensus       269 ~~l~~l~~Ele~~~~e~~~l~~e~~eL~~~l~~Q  302 (576)
                      +++.++..++...+.++...+.....++..+...
T Consensus       237 ~~L~~l~~ql~~a~~~~~~a~a~~~~l~~~l~~~  270 (754)
T TIGR01005       237 QQLAELNTELSRARANRAAAEGTADSVKKALQNG  270 (754)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            4556666666655556666666666666666543

The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.

>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules

Probab=89.89  E-value=20  Score=34.83  Aligned_cols=9  Identities=0%  Similarity=0.195  Sum_probs=3.2

Q ss_pred             HHHHHHHHH
Q 008135          450 QLNLLSKET  458 (576)
Q Consensus       450 ql~~lk~e~  458 (576)
                      +++..+..+
T Consensus       151 ei~~v~~~~  159 (207)
T PF05010_consen  151 EIAQVRSKH  159 (207)
T ss_pred             HHHHHHHHh
Confidence            333333333

The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].

>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []

Probab=89.85  E-value=15  Score=33.30  Aligned_cols=91  Identities=16%  Similarity=0.246  Sum_probs=57.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHH
Q 008135          246 LEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRRELQAVERDIAD  325 (576)
Q Consensus       246 L~~D~~K~~~~i~~l~~~~~~~e~~l~~l~~Ele~~~~e~~~l~~e~~eL~~~l~~Q~~s~~di~r~~~Er~~L~~~l~~  325 (576)
                      -.+++..|+++-+..+.+.-+...++...-.-++.....+..+..+++-+             .+=|.+|...+++.|+.
T Consensus        29 s~sals~f~AkEeeIErkKmeVrekVq~~LgrveEetkrLa~ireeLE~l-------------~dP~RkEv~~vRkkID~   95 (159)
T PF04949_consen   29 SRSALSAFRAKEEEIERKKMEVREKVQAQLGRVEEETKRLAEIREELEVL-------------ADPMRKEVEMVRKKIDS   95 (159)
T ss_pred             hHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhh-------------ccchHHHHHHHHHHHHH
Confidence            35677888888888777776666666555444444444445554444422             33466777777777777


Q ss_pred             HHHHHHHHHHhhhHHHHHHHHHHH
Q 008135          326 AENARNEWESKTWDLDSKLGRKFK  349 (576)
Q Consensus       326 ~e~~~~~l~~~~~~~e~~l~~~~e  349 (576)
                      ....+.-+-+.+...+.+|...++
T Consensus        96 vNreLkpl~~~cqKKEkEykeale  119 (159)
T PF04949_consen   96 VNRELKPLGQSCQKKEKEYKEALE  119 (159)
T ss_pred             HHHHhhHHHHHHHHHHHHHHHHHH
Confidence            777777777776666665544433

This entry represents proteins annotated as RAB6-interacting golgins.

>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=89.55  E-value=22  Score=35.63  Aligned_cols=58  Identities=17%  Similarity=0.318  Sum_probs=33.8

Q ss_pred             HHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135          217 EELKKKVSEMEGAMTGPTEREKLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGK  280 (576)
Q Consensus       217 ~~L~~~~~~le~l~~~~~~l~~l~~~~~~L~~D~~K~~~~i~~l~~~~~~~e~~l~~l~~Ele~  280 (576)
                      +..++.+.++..      ....+..++..+...++.++.|+..++..+...++++.+++.+++.
T Consensus        38 ~~sQ~~id~~~~------e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~   95 (251)
T PF11932_consen   38 QQSQKRIDQWDD------EKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQ   95 (251)
T ss_pred             HHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444555442      3455666666666666666666666666666666666666555543

However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.

>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]

Probab=89.41  E-value=23  Score=34.92  Aligned_cols=30  Identities=27%  Similarity=0.362  Sum_probs=12.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135          245 VLEEDLNKFNAIIGELNMRKEKMEKLVEEK  274 (576)
Q Consensus       245 ~L~~D~~K~~~~i~~l~~~~~~~e~~l~~l  274 (576)
                      +|+.|+...++.-+++...+.++++....+
T Consensus        95 ~Leddlsqt~aikeql~kyiReLEQaNDdL  124 (333)
T KOG1853|consen   95 QLEDDLSQTHAIKEQLRKYIRELEQANDDL  124 (333)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccHH
Confidence            344444444444444444444443333333

>PF09762 KOG2701: Coiled-coil domain-containing protein (DUF2037); InterPro: IPR019159 This entry represents a family of coiled-coil-containing proteins conserved from plants to vertebrates

Probab=89.38  E-value=9.5  Score=36.28  Aligned_cols=84  Identities=17%  Similarity=0.396  Sum_probs=58.0

Q ss_pred             HHHHHHHhhhCCCCC-CCCCCCCCCHHHHHHH---HHHHHHcCCCCC------------CcChH--hHHHHHHHhcCCCC
Q 008135           65 IRAINAHLSSHSFHI-AFPLKQVPSVKDITDV---IKFLISQLDYPS------------TTKFE--EDLFVVLKSLSCPF  126 (576)
Q Consensus        65 ~~~i~~fL~~~~~~~-~~k~l~~pt~k~f~~i---~~~L~~~ld~~~------------~~k~e--eev~~~lk~l~yP~  126 (576)
                      .+.|++.|..-||.. -++.|.     .|-.|   ..|.....++.+            +.|..  +.|+..|+.++|||
T Consensus         2 ~~~I~~~L~~aGY~RaRv~~Ls-----~fDkivGGi~W~i~~~~~~v~~dllf~E~~~i~~Ki~~~ekIv~~L~~m~CP~   76 (182)
T PF09762_consen    2 LQEILDLLSAAGYHRARVKSLS-----PFDKIVGGITWCITRCNVDVDVDLLFQENSTIGQKIALCEKIVEALPKMKCPH   76 (182)
T ss_pred             HHHHHHHHHHcCccHHHhcCCC-----hHHHHHhHHHHHHHhcCCCCCccchhcccccHHHHHHHHHHHHHHHHhCCCCC
Confidence            367899999999973 233332     35444   555555555322            22222  37999999999999


Q ss_pred             cccccccccCCCCCChHHHHHHHHHHHHHHH
Q 008135          127 KINKSTLRSPNSPHNWPAYLALIHWLVQIAS  157 (576)
Q Consensus       127 ~i~ks~l~~~g~~h~wp~~l~~L~WLv~l~~  157 (576)
                      .|.--+|.-    -..|++.-++.||+.-+.
T Consensus        77 ~l~phQi~g----lDf~~i~PVvqWLvkr~~  103 (182)
T PF09762_consen   77 RLEPHQIQG----LDFIHIFPVVQWLVKRVL  103 (182)
T ss_pred             CCCHHHHhc----CCHHHHHHHHHHHHHHHH
Confidence            998888753    267899999999997543

It includes Drosophila fidipidine, whose function is unknown.

>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT)

Probab=89.36  E-value=16  Score=32.82  Aligned_cols=28  Identities=29%  Similarity=0.308  Sum_probs=16.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135          236 REKLEKEKCVLEEDLNKFNAIIGELNMR  263 (576)
Q Consensus       236 l~~l~~~~~~L~~D~~K~~~~i~~l~~~  263 (576)
                      ..........+..|+.....+....+.+
T Consensus        19 ~~~~~~~~~~~~~dl~~q~~~a~~Aq~~   46 (132)
T PF07926_consen   19 EEDAEEQLQSLREDLESQAKIAQEAQQK   46 (132)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444455666667776666665555543

These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore

>COG2433 Uncharacterized conserved protein [Function unknown]

Probab=89.31  E-value=5.4  Score=44.20  Aligned_cols=41  Identities=22%  Similarity=0.208  Sum_probs=25.8

Q ss_pred             CCCCCCCCCCCCC-CCCCCCChHHHHHHHHHHHHHhhhCCCC
Q 008135           38 SSRPSSIGMGRAS-AADLYTDRSHQSSAIRAINAHLSSHSFH   78 (576)
Q Consensus        38 ~sr~s~~g~~~~~-d~rpl~dk~~q~~~~~~i~~fL~~~~~~   78 (576)
                      -||.-|.|.||-| +.-.-+--+......+.|-+-|...|++
T Consensus       142 VsR~RS~g~GGwSq~RY~R~vh~av~~~~reIee~L~~agld  183 (652)
T COG2433         142 VSRGRSLGPGGWSQNRYRRRVHGAVKRVVREIEEKLDEAGLD  183 (652)
T ss_pred             EEecccCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            4677777777654 2112222346667778888888888775

>PF15066 CAGE1: Cancer-associated gene protein 1 family

Probab=89.26  E-value=35  Score=36.74  Aligned_cols=92  Identities=22%  Similarity=0.219  Sum_probs=55.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 008135          238 KLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKK---VEEHKRICEENEEFKKRVKLQTINARDVERMRR  314 (576)
Q Consensus       238 ~l~~~~~~L~~D~~K~~~~i~~l~~~~~~~e~~l~~l~~Ele~~---~~e~~~l~~e~~eL~~~l~~Q~~s~~di~r~~~  314 (576)
                      +|.+-+..|+.+-.|=+..|..|+....-+++++.+|+-..-..   ..=+..|+..+++|          ++|--+|.-
T Consensus       314 aLNEvL~kLk~tn~kQq~~IqdLq~sN~yLe~kvkeLQ~k~~kQqvfvDiinkLk~niEeL----------IedKY~viL  383 (527)
T PF15066_consen  314 ALNEVLQKLKHTNRKQQNRIQDLQCSNLYLEKKVKELQMKITKQQVFVDIINKLKENIEEL----------IEDKYRVIL  383 (527)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHhhhccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH----------HHhHhHhhh
Confidence            45555666777777777777777777767777776665443221   23334455555555          456666777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhH
Q 008135          315 ELQAVERDIADAENARNEWESKTWD  339 (576)
Q Consensus       315 Er~~L~~~l~~~e~~~~~l~~~~~~  339 (576)
                      |+..+.+.+..+...+...++...+
T Consensus       384 EKnd~~k~lqnLqe~la~tqk~LqE  408 (527)
T PF15066_consen  384 EKNDIEKTLQNLQEALANTQKHLQE  408 (527)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            7777766666666655555554433

>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=89.21  E-value=46  Score=37.98  Aligned_cols=85  Identities=13%  Similarity=0.163  Sum_probs=43.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----cCCHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 008135          269 KLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQ----TINARDVER-MRRELQAVERDIADAENARNEWESKTWDLDSK  343 (576)
Q Consensus       269 ~~l~~l~~Ele~~~~e~~~l~~e~~eL~~~l~~Q----~~s~~di~r-~~~Er~~L~~~l~~~e~~~~~l~~~~~~~e~~  343 (576)
                      ..+..+.........++..+..+++.|-..|...    .+-..|-.. -..+.+.+              +.++.+++.+
T Consensus       110 ~~le~lr~qk~eR~~ef~el~~qie~l~~~l~g~~~~~~~~~~D~~dlsl~kLeel--------------r~~L~~L~~e  175 (660)
T KOG4302|consen  110 PYLEGLRKQKDERRAEFKELYHQIEKLCEELGGPEDLPSFLIADESDLSLEKLEEL--------------REHLNELQKE  175 (660)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccCCcccccCcccccHHHHHHH--------------HHHHHHHHHH
Confidence            3333444444445556666666777777777666    111111111 11233333              3333334444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHccC
Q 008135          344 LGRKFKELEALSMECNQAMKRLKL  367 (576)
Q Consensus       344 l~~~~e~le~l~~~yn~~~~kl~l  367 (576)
                      .+..++.+...+...+.++.-||+
T Consensus       176 k~~Rlekv~~~~~~I~~l~~~Lg~  199 (660)
T KOG4302|consen  176 KSDRLEKVLELKEEIKSLCSVLGL  199 (660)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCC
Confidence            555666666667777777776654

>COG2433 Uncharacterized conserved protein [Function unknown]

Probab=89.12  E-value=7.2  Score=43.24  Aligned_cols=11  Identities=9%  Similarity=0.277  Sum_probs=6.4

Q ss_pred             cceeEeeCCCC
Q 008135          369 TEIQYSLNSNG  379 (576)
Q Consensus       369 ~d~~~~ln~~~  379 (576)
                      .|+-+..++.|
T Consensus       545 GDvi~v~~~sG  555 (652)
T COG2433         545 GDVILVEDPSG  555 (652)
T ss_pred             CcEEEEEcCCC
Confidence            45666666554

>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=88.99  E-value=6.8  Score=40.71  Aligned_cols=25  Identities=12%  Similarity=0.194  Sum_probs=12.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135          311 RMRRELQAVERDIADAENARNEWES  335 (576)
Q Consensus       311 r~~~Er~~L~~~l~~~e~~~~~l~~  335 (576)
                      +...+++.+...++.....++.|++
T Consensus       110 ~~~~e~~sl~~q~~~~~~~L~~L~k  134 (314)
T PF04111_consen  110 EFQEERDSLKNQYEYASNQLDRLRK  134 (314)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3444455555555555555555544

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.

>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function

Probab=88.42  E-value=33  Score=35.35  Aligned_cols=53  Identities=17%  Similarity=0.263  Sum_probs=30.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135          241 KEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENE  293 (576)
Q Consensus       241 ~~~~~L~~D~~K~~~~i~~l~~~~~~~e~~l~~l~~Ele~~~~e~~~l~~e~~  293 (576)
                      .-.....+|.++++..+..+......++-++..+..+...++.+-..|.+|..
T Consensus       120 ~vf~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELa  172 (401)
T PF06785_consen  120 EVFMKTKGDIQHLEGLIRHLREENQCLQLQLDALQQECGEKEEESQTLNRELA  172 (401)
T ss_pred             HHHHHhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHH
Confidence            34445556666666666666666666666666666655555555555544433

>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants

Probab=88.41  E-value=57  Score=38.09  Aligned_cols=31  Identities=26%  Similarity=0.421  Sum_probs=13.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 008135          317 QAVERDIADAENARNEWESKTWDLDSKLGRK  347 (576)
Q Consensus       317 ~~L~~~l~~~e~~~~~l~~~~~~~e~~l~~~  347 (576)
                      ..+...+..++.....+..++..++.++...
T Consensus       662 e~le~~~~~~e~E~~~l~~Ki~~Le~Ele~e  692 (769)
T PF05911_consen  662 ESLETRLKDLEAEAEELQSKISSLEEELEKE  692 (769)
T ss_pred             HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333334444444444444544444444333

The function of this family is unknown.

>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6

Probab=88.31  E-value=17  Score=39.28  Aligned_cols=69  Identities=10%  Similarity=0.297  Sum_probs=44.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhhhHHHHH
Q 008135          275 EREIGKKVEEHKRICEENEEFKKRVKLQTI--NARDVERMRRELQAVERDIADAENARNEWE---SKTWDLDSK  343 (576)
Q Consensus       275 ~~Ele~~~~e~~~l~~e~~eL~~~l~~Q~~--s~~di~r~~~Er~~L~~~l~~~e~~~~~l~---~~~~~~e~~  343 (576)
                      ..+.......+.+|+.-+++|++-|...++  ++..++.+..++..+..+|.+++.-+..+.   +++|+.|+.
T Consensus       212 ~~~sd~Ll~kVdDLQD~VE~LRkDV~~RgvRp~~~qle~v~kdi~~a~~~L~~m~~~i~~~kp~WkKiWE~EL~  285 (424)
T PF03915_consen  212 SEESDRLLTKVDDLQDLVEDLRKDVVQRGVRPSPKQLETVAKDISRASKELKKMKEYIKTEKPIWKKIWESELQ  285 (424)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHH
Confidence            333444445566777777778887777655  667788888888888888877765555444   566766654

In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.

>PRK14011 prefoldin subunit alpha; Provisional

Probab=87.91  E-value=21  Score=32.58  Aligned_cols=26  Identities=31%  Similarity=0.312  Sum_probs=11.8

Q ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHH
Q 008135          418 SLQQQSSEMAAKIEGKRKRIDALQFH  443 (576)
Q Consensus       418 ~Lq~~l~~l~~~ieek~~~l~~Le~k  443 (576)
                      .++...+.+...++++...+..++..
T Consensus        99 ~l~~~~~~l~~~i~~~~~~~~~l~~~  124 (144)
T PRK14011         99 ELDKTKKEGNKKIEELNKEITKLRKE  124 (144)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444444444444444444443

>PF13863 DUF4200: Domain of unknown function (DUF4200)

Probab=87.90  E-value=17  Score=32.05  Aligned_cols=43  Identities=37%  Similarity=0.575  Sum_probs=32.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135          235 EREKLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKERE  277 (576)
Q Consensus       235 ~l~~l~~~~~~L~~D~~K~~~~i~~l~~~~~~~e~~l~~l~~E  277 (576)
                      +...|+.+-..|..++.+|..++.....+.....++...-...
T Consensus        33 ~e~~L~~~e~~l~~~~~~f~~flken~~k~~rA~k~a~~e~k~   75 (126)
T PF13863_consen   33 REEELEKKEQELEEDVIKFDKFLKENEAKRERAEKRAEEEKKK   75 (126)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence            5667888888999999999999998887776655554444333

>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=87.88  E-value=30  Score=34.25  Aligned_cols=54  Identities=19%  Similarity=0.155  Sum_probs=29.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135          248 EDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKL  301 (576)
Q Consensus       248 ~D~~K~~~~i~~l~~~~~~~e~~l~~l~~Ele~~~~e~~~l~~e~~eL~~~l~~  301 (576)
                      +.+.+-.+.+++-+..+.++.+.+..|..|-.+...+++++.+++..|...|..
T Consensus        18 ~~i~~e~~~~e~ee~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkq   71 (230)
T PF10146_consen   18 NEILQEVESLENEEKCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQ   71 (230)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333344444445555555555666555555556666666666666555433

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.

>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking

Probab=87.79  E-value=34  Score=34.76  Aligned_cols=34  Identities=9%  Similarity=0.080  Sum_probs=19.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135          491 VEVLKASESKFQEAIRQCEEEIQIRALDLFALVD  524 (576)
Q Consensus       491 ~~el~~~~~~~ee~~~e~eeek~~l~~el~~l~~  524 (576)
                      ...+...+.++..+...+...+..+..++..+..
T Consensus       125 ~~~~~~~~~~l~~l~~~l~~~r~~l~~~l~~ifp  158 (302)
T PF10186_consen  125 QNELEERKQRLSQLQSQLARRRRQLIQELSEIFP  158 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            3445555555555555556666666666666553

In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy

>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch

Probab=87.54  E-value=23  Score=32.46  Aligned_cols=35  Identities=20%  Similarity=0.307  Sum_probs=19.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135          492 EVLKASESKFQEAIRQCEEEIQIRALDLFALVDSV  526 (576)
Q Consensus       492 ~el~~~~~~~ee~~~e~eeek~~l~~el~~l~~~i  526 (576)
                      +++..++..++.....+..+.++-..++..|-+.+
T Consensus       115 ee~~klk~~~~~~~tq~~~e~rkke~E~~kLk~rL  149 (151)
T PF11559_consen  115 EELQKLKNQLQQRKTQYEHELRKKEREIEKLKERL  149 (151)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            34444555555555555566666666665555443

pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.

>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]

Probab=87.41  E-value=39  Score=36.27  Aligned_cols=61  Identities=18%  Similarity=0.228  Sum_probs=35.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135          235 EREKLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEF  295 (576)
Q Consensus       235 ~l~~l~~~~~~L~~D~~K~~~~i~~l~~~~~~~e~~l~~l~~Ele~~~~e~~~l~~e~~eL  295 (576)
                      .++..+.....+...+...+.-...+++..+..++++.+++..+.....+++.+++++..|
T Consensus       348 qlen~k~~~e~~~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E~n~~l  408 (493)
T KOG0804|consen  348 QLENQKQYYELLITEADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEEREENKKL  408 (493)
T ss_pred             HHHhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444555555555555555556666666666666666666666666665555555444444

>PRK10869 recombination and repair protein; Provisional

Probab=87.28  E-value=57  Score=36.79  Aligned_cols=22  Identities=9%  Similarity=0.161  Sum_probs=14.9

Q ss_pred             HHhcCCHHHHHHHHHHHHHHHH
Q 008135          300 KLQTINARDVERMRRELQAVER  321 (576)
Q Consensus       300 ~~Q~~s~~di~r~~~Er~~L~~  321 (576)
                      +..++.+.+-+++..++..|.+
T Consensus       198 ~~~~l~~gE~eeL~~e~~~L~n  219 (553)
T PRK10869        198 NEFAPQPGEFEQIDEEYKRLAN  219 (553)
T ss_pred             HhCCCCCCcHHHHHHHHHHHHH
Confidence            4466677777777777766654

>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]

Probab=87.28  E-value=61  Score=37.16  Aligned_cols=33  Identities=30%  Similarity=0.340  Sum_probs=21.2

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135          234 TEREKLEKEKCVLEEDLNKFNAIIGELNMRKEK  266 (576)
Q Consensus       234 ~~l~~l~~~~~~L~~D~~K~~~~i~~l~~~~~~  266 (576)
                      .....++.....++.|++|+...-..+..+...
T Consensus        90 ~~~~e~~~~le~~~~d~eki~~~~~~l~~~la~  122 (698)
T KOG0978|consen   90 TEVDELEQQLEDLQADLEKIRRRSNKLNKHLAE  122 (698)
T ss_pred             ccHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455566667777777777777666555555444

>TIGR03017 EpsF chain length determinant protein EpsF

Probab=86.93  E-value=50  Score=35.82  Aligned_cols=22  Identities=18%  Similarity=0.285  Sum_probs=11.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHc
Q 008135          344 LGRKFKELEALSMECNQAMKRL  365 (576)
Q Consensus       344 l~~~~e~le~l~~~yn~~~~kl  365 (576)
                      +....-+++..-..|+.++.++
T Consensus       344 ~~~L~r~~~~~~~~y~~ll~r~  365 (444)
T TIGR03017       344 MSVLQRDVENAQRAYDAAMQRY  365 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            3334444444445566666554

Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.

>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast)

Probab=86.85  E-value=20  Score=34.25  Aligned_cols=44  Identities=18%  Similarity=0.363  Sum_probs=25.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHHH
Q 008135          280 KKVEEHKRICEENEEFKKRVKL-QTINARDVERMRRELQAVERDI  323 (576)
Q Consensus       280 ~~~~e~~~l~~e~~eL~~~l~~-Q~~s~~di~r~~~Er~~L~~~l  323 (576)
                      ..-.+++.++.++.+|+..++. ...+|+-++.++.+...+...+
T Consensus       107 ~~l~~l~~l~~~~~~l~~el~~~~~~Dp~~i~~~~~~~~~~~~~a  151 (188)
T PF03962_consen  107 ELLEELEELKKELKELKKELEKYSENDPEKIEKLKEEIKIAKEAA  151 (188)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence            3445566666677777776664 3456666666665555444333

The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].

>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]

Probab=86.45  E-value=31  Score=32.92  Aligned_cols=43  Identities=21%  Similarity=0.250  Sum_probs=20.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135          238 KLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGK  280 (576)
Q Consensus       238 ~l~~~~~~L~~D~~K~~~~i~~l~~~~~~~e~~l~~l~~Ele~  280 (576)
                      .++.+...+...+..-+..-..-..+..+.-.+|.-++.+|+.
T Consensus        57 kdEE~~e~~e~qLkEAk~iaE~adrK~eEVarkL~iiE~dLE~   99 (205)
T KOG1003|consen   57 KLEEKMEAQEAQLKEAKHIAEKADRKYEEVARKLVIIEGELER   99 (205)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence            3444444444444444444444444455555555555544443

>PF15188 CCDC-167: Coiled-coil domain-containing protein 167

Probab=86.40  E-value=6  Score=32.59  Aligned_cols=63  Identities=13%  Similarity=0.226  Sum_probs=51.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008135          276 REIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRRELQAVERDIADAENARNEWESKTW  338 (576)
Q Consensus       276 ~Ele~~~~e~~~l~~e~~eL~~~l~~Q~~s~~di~r~~~Er~~L~~~l~~~e~~~~~l~~~~~  338 (576)
                      .|++..+..+.++...++.+..++....+|+++-..+-.|...+...+...++++..|++...
T Consensus         5 ~eId~lEekl~~cr~~le~ve~rL~~~eLs~e~R~~lE~E~~~l~~~l~~~E~eL~~LrkENr   67 (85)
T PF15188_consen    5 KEIDGLEEKLAQCRRRLEAVESRLRRRELSPEARRSLEKELNELKEKLENNEKELKLLRKENR   67 (85)
T ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHcccCCChHHHHHHHHHHHHHHHHhhccHHHHHHHHHhhh
Confidence            345555556666777778888899999999999999999999999999999999988887543

>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]

Probab=86.32  E-value=16  Score=35.54  Aligned_cols=80  Identities=15%  Similarity=0.257  Sum_probs=43.1

Q ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Q 008135          287 RICEENEEFKKRVKLQTINARDVERMRRELQAVERDIADAENARNEWESKTWDLDSKLGRKFKELEALSMECNQAMKRLK  366 (576)
Q Consensus       287 ~l~~e~~eL~~~l~~Q~~s~~di~r~~~Er~~L~~~l~~~e~~~~~l~~~~~~~e~~l~~~~e~le~l~~~yn~~~~kl~  366 (576)
                      ....++..++..++.++-=.++.+.++.+...|+.++++....++.++.++..+........++..++.++|+.+-.++.
T Consensus       131 ~~~~~~~~lk~~~~~~~~~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i~  210 (216)
T KOG1962|consen  131 KAMKENEALKKQLENSSKLEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQIE  210 (216)
T ss_pred             HHHHHHHHHHHhhhcccchhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHh
Confidence            34455555555555544323334444444555555555555555555555555555555555666667777777665543

>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6

Probab=86.24  E-value=7.4  Score=33.43  Aligned_cols=71  Identities=18%  Similarity=0.277  Sum_probs=44.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 008135          269 KLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRRELQAVERDIADAENARNEWESKTWD  339 (576)
Q Consensus       269 ~~l~~l~~Ele~~~~e~~~l~~e~~eL~~~l~~Q~~s~~di~r~~~Er~~L~~~l~~~e~~~~~l~~~~~~  339 (576)
                      ..+..+..+......+++.++.+...+.+.|....-+.++++.+..+...+...+..++.....++.+...
T Consensus        29 d~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~~~~~~e~~l~~   99 (108)
T PF02403_consen   29 DEIIELDQERRELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEEQLKELEEELNE   99 (108)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444444555556666677777777766655444677777777777777777776666666555433

1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....

>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases

Probab=85.99  E-value=49  Score=34.81  Aligned_cols=43  Identities=9%  Similarity=0.190  Sum_probs=24.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 008135          413 LEELISLQQQSSEMAAKIEGKRKRIDALQFHINEMETQLNLLS  455 (576)
Q Consensus       413 ~~e~~~Lq~~l~~l~~~ieek~~~l~~Le~kl~~l~~ql~~lk  455 (576)
                      ...+..++..+......+.+++..+..++.++..+..+|+...
T Consensus       220 ~~~l~~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~  262 (344)
T PF12777_consen  220 RQKLEEAEAELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQ  262 (344)
T ss_dssp             HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444455555555555555655665556666665555555444

The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.

>PF14915 CCDC144C: CCDC144C protein coiled-coil region

Probab=85.97  E-value=43  Score=34.13  Aligned_cols=52  Identities=12%  Similarity=0.153  Sum_probs=28.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135          411 EKLEELISLQQQSSEMAAKIEGKRKRIDALQFHINEMETQLNLLSKETQEIT  462 (576)
Q Consensus       411 ~~~~e~~~Lq~~l~~l~~~ieek~~~l~~Le~kl~~l~~ql~~lk~e~eee~  462 (576)
                      .......+|+.++......+.++.--+..++..+.....++.++..-++.+.
T Consensus       155 kaesK~nsLe~elh~trdaLrEKtL~lE~~QrdL~Qtq~q~KE~e~m~qne~  206 (305)
T PF14915_consen  155 KAESKFNSLEIELHHTRDALREKTLALESVQRDLSQTQCQIKEIEHMYQNEQ  206 (305)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence            3334444555555555555555555555555555555555555555444443

>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]

Probab=85.42  E-value=54  Score=34.80  Aligned_cols=10  Identities=20%  Similarity=0.527  Sum_probs=3.8

Q ss_pred             HHHHHHHHHH
Q 008135          492 EVLKASESKF  501 (576)
Q Consensus       492 ~el~~~~~~~  501 (576)
                      .-+...+.+|
T Consensus       320 sslemdeery  329 (552)
T KOG2129|consen  320 SSLEMDEERY  329 (552)
T ss_pred             HHHHHHHHHH
Confidence            3333333333

>KOG1937 consensus Uncharacterized conserved protein [Function unknown]

Probab=85.12  E-value=59  Score=34.97  Aligned_cols=42  Identities=17%  Similarity=0.244  Sum_probs=30.3

Q ss_pred             HHHHHHHHHhhhCCCCCCCC--CCCCCCHHHHHHHHHHHHHcCC
Q 008135           63 SAIRAINAHLSSHSFHIAFP--LKQVPSVKDITDVIKFLISQLD  104 (576)
Q Consensus        63 ~~~~~i~~fL~~~~~~~~~k--~l~~pt~k~f~~i~~~L~~~ld  104 (576)
                      .....|-.++..-||+..+.  +..-|..-|.-..|-||...++
T Consensus        65 rla~siAq~ckdlgyrgD~gyqtfLypn~~dlR~ll~fLie~lp  108 (521)
T KOG1937|consen   65 RLANSIAQYCKDLGYRGDTGYQTFLYPNINDLRSLLIFLIEKLP  108 (521)
T ss_pred             HHHHHHHHHHHHcCCCcccchhheecCCcccHHHHHHHHHhhCC
Confidence            35567777887778875443  3346777778888899999887

>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily

Probab=84.92  E-value=67  Score=35.46  Aligned_cols=20  Identities=5%  Similarity=0.024  Sum_probs=12.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHh
Q 008135          283 EEHKRICEENEEFKKRVKLQ  302 (576)
Q Consensus       283 ~e~~~l~~e~~eL~~~l~~Q  302 (576)
                      -....++.++..|+..+...
T Consensus       275 P~v~~l~~qi~~l~~~l~~~  294 (498)
T TIGR03007       275 PDVIATKREIAQLEEQKEEE  294 (498)
T ss_pred             hHHHHHHHHHHHHHHHHHhh
Confidence            34456677777777776554

Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.

>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans

Probab=84.75  E-value=34  Score=31.82  Aligned_cols=49  Identities=18%  Similarity=0.184  Sum_probs=22.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135          413 LEELISLQQQSSEMAAKIEGKRKRIDALQFHINEMETQLNLLSKETQEI  461 (576)
Q Consensus       413 ~~e~~~Lq~~l~~l~~~ieek~~~l~~Le~kl~~l~~ql~~lk~e~eee  461 (576)
                      ..++..|+....++.......+..-...+.++..++..+....+++...
T Consensus        49 ~~e~~~L~~d~e~L~~q~~~ek~~r~~~e~~l~~~Ed~~~~e~k~L~~~   97 (158)
T PF09744_consen   49 EVELELLREDNEQLETQYEREKELRKQAEEELLELEDQWRQERKDLQSQ   97 (158)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344455555555555554444443444444444444444444333333

Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.

>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells

Probab=84.69  E-value=47  Score=33.46  Aligned_cols=83  Identities=17%  Similarity=0.244  Sum_probs=38.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HhcCCHHHHHH
Q 008135          237 EKLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVK-----LQTINARDVER  311 (576)
Q Consensus       237 ~~l~~~~~~L~~D~~K~~~~i~~l~~~~~~~e~~l~~l~~Ele~~~~e~~~l~~e~~eL~~~l~-----~Q~~s~~di~r  311 (576)
                      ..++.+...|..|+..++.-......+...+......+...-......+..+...+.++-..+.     ..+.+..++.+
T Consensus        48 ~~~e~~l~~L~~d~~~L~~k~~~~~~~~~~l~~~t~~t~~~a~~L~~~i~~l~~~i~~l~~~~~~l~~~~~~~~~~~l~~  127 (264)
T PF06008_consen   48 DPLEKELESLEQDVENLQEKATKVSRKAQQLNNNTERTLQRAQDLEQFIQNLQDNIQELIEQVESLNENGDQLPSEDLQR  127 (264)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccCCCCHHHHHH
Confidence            3344444444444444444444444444444444444433333333444444444444444443     34557777776


Q ss_pred             HHHHHHHH
Q 008135          312 MRRELQAV  319 (576)
Q Consensus       312 ~~~Er~~L  319 (576)
                      +..+-+.+
T Consensus       128 ~l~ea~~m  135 (264)
T PF06008_consen  128 ALAEAQRM  135 (264)
T ss_pred             HHHHHHHH
Confidence            65555444

Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex

>PLN02939 transferase, transferring glycosyl groups

Probab=84.14  E-value=1e+02  Score=36.92  Aligned_cols=20  Identities=15%  Similarity=0.353  Sum_probs=11.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHh
Q 008135          413 LEELISLQQQSSEMAAKIEG  432 (576)
Q Consensus       413 ~~e~~~Lq~~l~~l~~~iee  432 (576)
                      .++...|+++++.+...+++
T Consensus       323 ~~~~~~~~~~~~~~~~~~~~  342 (977)
T PLN02939        323 LDQNQDLRDKVDKLEASLKE  342 (977)
T ss_pred             hccchHHHHHHHHHHHHHHH
Confidence            34445566666666555554

>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]

Probab=84.13  E-value=60  Score=34.20  Aligned_cols=41  Identities=10%  Similarity=0.156  Sum_probs=24.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 008135          512 IQIRALDLFALVDSVSKYKERMESKISKMNKGISETALTVS  552 (576)
Q Consensus       512 k~~l~~el~~l~~~i~k~K~~i~~~i~~~~~~~~~~~~~i~  552 (576)
                      ++-.......+-.-+.-.|.+-...|+++++.+..+..++-
T Consensus       542 KkyaSdKYkDiYtELSiaKakadcdIsrLKEqLkaAteALg  582 (593)
T KOG4807|consen  542 KKYASDKYKDIYTELSIAKAKADCDISRLKEQLKAATEALG  582 (593)
T ss_pred             hhccccchhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHhc
Confidence            33344445555555566666666777777777666655553

>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein

Probab=84.08  E-value=71  Score=35.00  Aligned_cols=161  Identities=9%  Similarity=0.139  Sum_probs=0.0

Q ss_pred             HHHHHHhHHHHHHHHHHHHHHHHhccCCC----------------ChHHHHHHHHHHHHHHHHHHHHHHH----HHHHHH
Q 008135          205 LEKEKENVSEYVEELKKKVSEMEGAMTGP----------------TEREKLEKEKCVLEEDLNKFNAIIG----ELNMRK  264 (576)
Q Consensus       205 l~~~~~~~~~~~~~L~~~~~~le~l~~~~----------------~~l~~l~~~~~~L~~D~~K~~~~i~----~l~~~~  264 (576)
                      +...+..+..++..++....+|+++....                ..+.....+...+...+......+.    .+...+
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~rL~a~~~~~~~~~~~f~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (457)
T TIGR01000        95 EENQKQLLEQQLDNLKDQKKSLDTLKQSIENGRNQFPTDDSFGYRNLFNGYLAQVESLTSETQQQNDKSQTQNEAAEKTK  174 (457)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCCcchhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHhhH


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHH
Q 008135          265 EKMEKLVEEKEREIGKKVEEHKRICE-------------------ENEEFKKRVKLQTINARDVERMRRELQAVERDIAD  325 (576)
Q Consensus       265 ~~~e~~l~~l~~Ele~~~~e~~~l~~-------------------e~~eL~~~l~~Q~~s~~di~r~~~Er~~L~~~l~~  325 (576)
                      ..+...+..++.++...+.....+++                   +...++..++........+..+..++..++.++.+
T Consensus       175 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~i~~  254 (457)
T TIGR01000       175 AQLDQQISKTDQKLQDYQALKNAISNGTKVANFNPYQSLYENYQAQLKSASDKDQKNQVKSTILATIQQQIDQLQKSIAS  254 (457)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH


Q ss_pred             HHHHHHHH------------HHhhhHHHHHHH-HHHHHHHHHHHHHHHHHHHc
Q 008135          326 AENARNEW------------ESKTWDLDSKLG-RKFKELEALSMECNQAMKRL  365 (576)
Q Consensus       326 ~e~~~~~l------------~~~~~~~e~~l~-~~~e~le~l~~~yn~~~~kl  365 (576)
                      ++.++..+            +.+...+..... ....++...-.++..+...+
T Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~l~~~~~~l  307 (457)
T TIGR01000       255 YQVQKAGLTKSTASNYASSQNSKLAQLKEQQLAKVKQEITDLNQKLLELESKI  307 (457)
T ss_pred             HHHHHhhccCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH

This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.

>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]

Probab=83.92  E-value=74  Score=35.10  Aligned_cols=80  Identities=15%  Similarity=0.145  Sum_probs=39.9

Q ss_pred             HHhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135          226 MEGAMTGPTEREKLEKEKCVLEEDLNKFNAIIGELNM-------RKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKR  298 (576)
Q Consensus       226 le~l~~~~~~l~~l~~~~~~L~~D~~K~~~~i~~l~~-------~~~~~e~~l~~l~~Ele~~~~e~~~l~~e~~eL~~~  298 (576)
                      +|.+.+.......|.++..+|+.++..-.+..-.++.       .....+.+|..++--|+.+..++-.++..+..-.++
T Consensus       330 ~EeIe~~~ke~kdLkEkv~~lq~~l~eke~sl~dlkehassLas~glk~ds~Lk~leIalEqkkEec~kme~qLkkAh~~  409 (654)
T KOG4809|consen  330 LEEIESFRKENKDLKEKVNALQAELTEKESSLIDLKEHASSLASAGLKRDSKLKSLEIALEQKKEECSKMEAQLKKAHNI  409 (654)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3333333334556666666666665544444334443       344445555555555555555555555555555444


Q ss_pred             HHHhcCC
Q 008135          299 VKLQTIN  305 (576)
Q Consensus       299 l~~Q~~s  305 (576)
                      .++.-++
T Consensus       410 ~ddar~~  416 (654)
T KOG4809|consen  410 EDDARMN  416 (654)
T ss_pred             hHhhhcC
Confidence            4443333

>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional

Probab=83.81  E-value=90  Score=36.01  Aligned_cols=36  Identities=11%  Similarity=0.280  Sum_probs=23.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135          394 LKPALESFADDVKRSSVEKLEELISLQQQSSEMAAKI  430 (576)
Q Consensus       394 ik~~L~~l~~ei~~~~~~~~~e~~~Lq~~l~~l~~~i  430 (576)
                      .++.+..|..+|+..+....+ ...|++.++.+...+
T Consensus       647 ~k~KIe~L~~eIkkkIe~av~-ss~LK~k~E~Lk~Ev  682 (762)
T PLN03229        647 LQEKIESLNEEINKKIERVIR-SSDLKSKIELLKLEV  682 (762)
T ss_pred             hHHHHHHHHHHHHHHHHHHhc-chhHHHHHHHHHHHH
Confidence            355667888888887777765 344555555555444

>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=83.81  E-value=50  Score=33.03  Aligned_cols=20  Identities=25%  Similarity=0.393  Sum_probs=11.3

Q ss_pred             HHHHhHHHHHHHHHHHHHHh
Q 008135          537 ISKMNKGISETALTVSEAYK  556 (576)
Q Consensus       537 i~~~~~~~~~~~~~i~~~f~  556 (576)
                      +++-+....+.|..|.+.|.
T Consensus       140 l~~~dv~~~ek~r~vlea~~  159 (251)
T PF11932_consen  140 LDDADVSLAEKFRRVLEAYQ  159 (251)
T ss_pred             hhccCCCHHHHHHHHHHHHH
Confidence            33333446666777766665

However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.

>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA

Probab=83.69  E-value=57  Score=33.66  Aligned_cols=23  Identities=22%  Similarity=0.291  Sum_probs=16.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Q 008135          486 VEREAVEVLKASESKFQEAIRQC  508 (576)
Q Consensus       486 ~~~ea~~el~~~~~~~ee~~~e~  508 (576)
                      +..+|+-++...+-+++.+.+++
T Consensus       277 ~qrdanrqisd~KfKl~KaEQei  299 (302)
T PF09738_consen  277 LQRDANRQISDYKFKLQKAEQEI  299 (302)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHhh
Confidence            44678888888888887776543

They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.

>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]

Probab=83.22  E-value=69  Score=34.23  Aligned_cols=138  Identities=17%  Similarity=0.214  Sum_probs=73.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhhHH
Q 008135          413 LEELISLQQQSSEMAAKIEGKRKRIDALQFHINEMETQLN------LLSKETQEITKRCAEEAKKMEEDIQTEAHNLDMV  486 (576)
Q Consensus       413 ~~e~~~Lq~~l~~l~~~ieek~~~l~~Le~kl~~l~~ql~------~lk~e~eee~~~~~~Ei~kl~eele~~~~~~~~~  486 (576)
                      .+.+...+..+.++...++..+.+-.....+.-.|+..++      ++++-.+.+..+  .|++.++..++..+.++..-
T Consensus       251 le~Lq~aEqsl~dlQk~Lekar~e~rnvavek~~lerkl~ea~rl~elreg~e~e~~r--kelE~lR~~L~kAEkele~n  328 (575)
T KOG4403|consen  251 LEGLQRAEQSLEDLQKRLEKAREEQRNVAVEKLDLERKLDEAPRLSELREGVENETSR--KELEQLRVALEKAEKELEAN  328 (575)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHhhhhhhhhhhcchhHHHHH--HHHHHHHHHHHHHHHHHHhc
Confidence            3445566666777777777666664444444334444433      333334444333  36666666666644222110


Q ss_pred             H-HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHhHHHHHHHHHHH
Q 008135          487 E-REAVEVLKASESKFQE-AIRQCEEEIQIRALDLFALVDSVSKYKERMESK-----------ISKMNKGISETALTVS  552 (576)
Q Consensus       487 ~-~ea~~el~~~~~~~ee-~~~e~eeek~~l~~el~~l~~~i~k~K~~i~~~-----------i~~~~~~~~~~~~~i~  552 (576)
                      - -.|=..|..|-+.-.+ -.+-++-+|+.+.++|..+.+.+++.|.+-.+.           +++++-.++++-.++.
T Consensus       329 S~wsaP~aLQ~wLq~T~E~E~q~~~kkrqnaekql~~Ake~~eklkKKrssv~gtl~vahgsslDdVD~kIleak~al~  407 (575)
T KOG4403|consen  329 SSWSAPLALQKWLQLTHEVEVQYYNKKRQNAEKQLKEAKEMAEKLKKKRSSVFGTLHVAHGSSLDDVDHKILEAKSALS  407 (575)
T ss_pred             cCCCCcHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhcchheeeeeccccchhhHHHHHHHHHHHHH
Confidence            0 0122344444444333 333455677888888999988888887765443           4555555555444443

>PF13870 DUF4201: Domain of unknown function (DUF4201)

Probab=83.21  E-value=41  Score=31.65  Aligned_cols=30  Identities=13%  Similarity=0.334  Sum_probs=12.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135          268 EKLVEEKEREIGKKVEEHKRICEENEEFKK  297 (576)
Q Consensus       268 e~~l~~l~~Ele~~~~e~~~l~~e~~eL~~  297 (576)
                      +..+..+..++.....+...+...+.+|+.
T Consensus       104 ~~~~~~~r~~l~~~k~~r~k~~~~~~~l~~  133 (177)
T PF13870_consen  104 EEELAKLREELYRVKKERDKLRKQNKKLRQ  133 (177)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333334444444444444444444444433

>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family

Probab=83.18  E-value=69  Score=34.20  Aligned_cols=37  Identities=22%  Similarity=0.343  Sum_probs=15.6

Q ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135          420 QQQSSEMAAKIEGKRKRIDALQFHINEMETQLNLLSK  456 (576)
Q Consensus       420 q~~l~~l~~~ieek~~~l~~Le~kl~~l~~ql~~lk~  456 (576)
                      +.++..+...+...+.++..++.++..+..++.....
T Consensus       143 ~~~~~~l~~~i~~~~~~i~~~~~~l~~~~~~l~~~~~  179 (423)
T TIGR01843       143 RAQLELILAQIKQLEAELAGLQAQLQALRQQLEVISE  179 (423)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333344444444444444444444444444444433

Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.

>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana

Probab=83.18  E-value=43  Score=32.10  Aligned_cols=48  Identities=25%  Similarity=0.335  Sum_probs=29.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135          411 EKLEELISLQQQSSEMAAKIEGKRKRIDALQFHINEMETQLNLLSKET  458 (576)
Q Consensus       411 ~~~~e~~~Lq~~l~~l~~~ieek~~~l~~Le~kl~~l~~ql~~lk~e~  458 (576)
                      .+.++...++.++.+......+.+..+..|+.++.++..+...++...
T Consensus       107 ~~~e~~k~le~~~~~~~~~~~~~e~~i~~Le~ki~el~~~~~~~~~~k  154 (190)
T PF05266_consen  107 KLLEERKKLEKKIEEKEAELKELESEIKELEMKILELQRQAAKLKEKK  154 (190)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444555566666666655556667777777777777766644444333

>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants

Probab=82.56  E-value=1.1e+02  Score=35.93  Aligned_cols=46  Identities=15%  Similarity=0.134  Sum_probs=32.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 008135          406 KRSSVEKLEELISLQQQSSEMAAKIEGKRKRIDALQFHINEMETQL  451 (576)
Q Consensus       406 ~~~~~~~~~e~~~Lq~~l~~l~~~ieek~~~l~~Le~kl~~l~~ql  451 (576)
                      ..++....++...|.+-+..-+..+.-.+...+.--.++..++.|+
T Consensus       264 ~~~l~~~eeEnk~Lke~l~~k~~ELq~sr~~~a~ta~kL~~~e~ql  309 (769)
T PF05911_consen  264 TERLQAMEEENKMLKEALAKKNSELQFSRNMYAKTASKLSQLEAQL  309 (769)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4445556666777777777777777777777777777777777777

The function of this family is unknown.

>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein

Probab=82.23  E-value=50  Score=31.89  Aligned_cols=60  Identities=28%  Similarity=0.406  Sum_probs=31.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135          394 LKPALESFADDVKRSSVEKLEELISLQQQSSEMAAKIEGKRKRIDALQFHINEMETQLNLLSKE  457 (576)
Q Consensus       394 ik~~L~~l~~ei~~~~~~~~~e~~~Lq~~l~~l~~~ieek~~~l~~Le~kl~~l~~ql~~lk~e  457 (576)
                      +|.+|...-.+++    .+..++..|..++.+.+..+...+..+..|...+..-..+++....+
T Consensus        15 LKqQLke~q~E~~----~K~~Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K~~ELE~ce~E   74 (202)
T PF06818_consen   15 LKQQLKESQAEVN----QKDSEIVSLRAQLRELRAELRNKESQIQELQDSLRTKQLELEVCENE   74 (202)
T ss_pred             HHHHHHHHHHHHH----HHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHhHHH
Confidence            3444444433433    33344446666666666666666666666666555444444433333

Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane

>PRK10929 putative mechanosensitive channel protein; Provisional

Probab=82.10  E-value=1.3e+02  Score=36.73  Aligned_cols=29  Identities=17%  Similarity=0.108  Sum_probs=14.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135          236 REKLEKEKCVLEEDLNKFNAIIGELNMRK  264 (576)
Q Consensus       236 l~~l~~~~~~L~~D~~K~~~~i~~l~~~~  264 (576)
                      +..|+.+.....+++...+.-..+.+++.
T Consensus       104 ~~~Leq~l~~~~~~L~~~q~~l~~~~~~~  132 (1109)
T PRK10929        104 TDALEQEILQVSSQLLEKSRQAQQEQDRA  132 (1109)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            45555555555555555544444443333

>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function

Probab=82.07  E-value=30  Score=30.82  Aligned_cols=30  Identities=17%  Similarity=0.326  Sum_probs=12.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135          266 KMEKLVEEKEREIGKKVEEHKRICEENEEF  295 (576)
Q Consensus       266 ~~e~~l~~l~~Ele~~~~e~~~l~~e~~eL  295 (576)
                      ++.++|..+...++....-.+.++.+..++
T Consensus        65 hLsqRId~vd~klDe~~ei~~~i~~eV~~v   94 (126)
T PF07889_consen   65 HLSQRIDRVDDKLDEQKEISKQIKDEVTEV   94 (126)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence            333444444444433333333444444444

The region featured in this family is approximately 100 amino acids long.

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=81.90  E-value=79  Score=34.92  Aligned_cols=40  Identities=10%  Similarity=0.076  Sum_probs=20.4

Q ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135          418 SLQQQSSEMAAKIEGKRKRIDALQFHINEMETQLNLLSKE  457 (576)
Q Consensus       418 ~Lq~~l~~l~~~ieek~~~l~~Le~kl~~l~~ql~~lk~e  457 (576)
                      .++.++++.-..+.+.+.+.+.+.+....|...|++....
T Consensus       592 ~l~~~k~~QlQ~l~~~~eer~~i~e~a~~La~R~eea~e~  631 (741)
T KOG4460|consen  592 LLCDQKKKQLQDLSYCREERKSLREMAERLADRYEEAKEK  631 (741)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3334444444445555555555555555555555555443

>smart00806 AIP3 Actin interacting protein 3

Probab=81.73  E-value=74  Score=34.22  Aligned_cols=133  Identities=11%  Similarity=0.225  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135          214 EYVEELKKKVSEMEGAMTGPTEREKLEKEKCVLEEDLNKFNAIIGELN--MRKEKMEKLVEEKEREIGKKVEEHKRICEE  291 (576)
Q Consensus       214 ~~~~~L~~~~~~le~l~~~~~~l~~l~~~~~~L~~D~~K~~~~i~~l~--~~~~~~e~~l~~l~~Ele~~~~e~~~l~~e  291 (576)
                      ++++.|..++.-|.++.+  +-......-+..+...+.+|+.+--...  +-..=++.--..|..+.+.......+|+.=
T Consensus       155 ~el~~lrrdLavlRQ~~~--~~~~~~~~sm~~i~~k~~~~k~~~~~~~~~s~R~y~e~~k~kL~~~Sd~lltkVDDLQD~  232 (426)
T smart00806      155 AELKSLQRELAVLRQTHN--SFFTEIKESIKDILEKIDKFKSSSLSASGSSNRAYVESSKKKLSEDSDSLLTKVDDLQDI  232 (426)
T ss_pred             HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhhhccCCCcchHHHHHhHHHHHHHHHHHHHHHHHHHHH


Q ss_pred             HHHHHHHHHHhcC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhhhHHHHHHHHHHHHHHHHHHH
Q 008135          292 NEEFKKRVKLQTI--NARDVERMRRELQAVERDIADAENARNEWE---SKTWDLDSKLGRKFKELEALSME  357 (576)
Q Consensus       292 ~~eL~~~l~~Q~~--s~~di~r~~~Er~~L~~~l~~~e~~~~~l~---~~~~~~e~~l~~~~e~le~l~~~  357 (576)
                      ++.|++-|...|+  ++..++.+.+++..+.++|.+++.-+....   +++|+.|+         +.+|++
T Consensus       233 vE~LRkDV~~RgVRp~~~qLe~v~kdi~~a~keL~~m~~~i~~eKP~WkKiWE~EL---------~~VcEE  294 (426)
T smart00806      233 IEALRKDVAQRGVRPSKKQLETVQKELETARKELKKMEEYIDIEKPIWKKIWEAEL---------DKVCEE  294 (426)
T ss_pred             HHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHH---------HHHHHH

Aip3p/Bud6p is a regulator of cell and cytoskeletal polarity in Saccharomyces cerevisiae that was previously identified as an actin-interacting protein. Actin-interacting protein 3 (Aip3p) localizes at the cell cortex where cytoskeleton assembly must be achieved to execute polarized cell growth, and deletion of AIP3 causes gross defects in cell and cytoskeletal polarity. Aip3p localization is mediated by the secretory pathway, mutations in early- or late-acting components of the secretory apparatus lead to Aip3p mislocalization PUBMED:10679021.

>PF13166 AAA_13: AAA domain

Probab=81.57  E-value=1.1e+02  Score=35.44  Aligned_cols=60  Identities=22%  Similarity=0.410  Sum_probs=32.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH---HHHHHHHHHHHHHHHHHHHHHccC
Q 008135          308 DVERMRRELQAVERDIADAENARNEWESKTWDLDSK---LGRKFKELEALSMECNQAMKRLKL  367 (576)
Q Consensus       308 di~r~~~Er~~L~~~l~~~e~~~~~l~~~~~~~e~~---l~~~~e~le~l~~~yn~~~~kl~l  367 (576)
                      ++.....+...+...+..++..+..+.......+..   +...+......+..+|..+..+|.
T Consensus       411 ~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~iN~~L~~~g~  473 (712)
T PF13166_consen  411 DIEEYQKEIKELEKEINSLEKKLKKAKEEIKKIEKEIKELEAQLKNTEPAADRINEELKRLGF  473 (712)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCC
Confidence            333344444444444444444444444443333333   333444567778888999988864

>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold)

Probab=80.92  E-value=35  Score=29.31  Aligned_cols=61  Identities=15%  Similarity=0.267  Sum_probs=34.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135          238 KLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKR  298 (576)
Q Consensus       238 ~l~~~~~~L~~D~~K~~~~i~~l~~~~~~~e~~l~~l~~Ele~~~~e~~~l~~e~~eL~~~  298 (576)
                      .++.....|+.-++..+.-+..|......+...+..++.+.......+..|+.++.++...
T Consensus        13 el~n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~   73 (107)
T PF09304_consen   13 ELQNRLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRN   73 (107)
T ss_dssp             -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445555666666666666666666666666666666555555555555555555555443

The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.

>PRK15422 septal ring assembly protein ZapB; Provisional

Probab=80.91  E-value=28  Score=28.14  Aligned_cols=29  Identities=21%  Similarity=0.357  Sum_probs=20.7

Q ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Q 008135          200 GFIEKLEKEKENVSEYVEELKKKVSEMEG  228 (576)
Q Consensus       200 ~~~~kl~~~~~~~~~~~~~L~~~~~~le~  228 (576)
                      ++.++|+..+....+.+.-|+-++++|..
T Consensus         4 EvleqLE~KIqqAvdtI~LLqmEieELKe   32 (79)
T PRK15422          4 EVFEKLEAKVQQAIDTITLLQMEIEELKE   32 (79)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44567777777777777777777777653

>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []

Probab=80.39  E-value=58  Score=31.49  Aligned_cols=100  Identities=21%  Similarity=0.274  Sum_probs=46.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135          254 NAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQT-INARDVERMRRELQAVERDIADAENARNE  332 (576)
Q Consensus       254 ~~~i~~l~~~~~~~e~~l~~l~~Ele~~~~e~~~l~~e~~eL~~~l~~Q~-~s~~di~r~~~Er~~L~~~l~~~e~~~~~  332 (576)
                      +.-|..++.........+...+..-..........+.|+.+|-.+   .. -|+.|++|-. +.   -+.=...+.....
T Consensus        38 K~~i~~~E~~l~~~r~~~~~aK~~Y~~ai~~Rs~sQrEvn~LLqR---K~sWs~~DleRFT-~L---yr~dH~~e~~e~~  110 (207)
T PF05546_consen   38 KKSIEELEDELEAARQEVREAKAAYDDAIQQRSSSQREVNELLQR---KHSWSPADLERFT-EL---YRNDHENEQAEEE  110 (207)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---ccCCChHHHHHHH-HH---HHhhhhhHHHHHH
Confidence            333333444444444444444444445555566666676666443   33 3899998843 22   1111222223333


Q ss_pred             HHHhhhHHHHHHHHHHHHHHH-HHHHHHH
Q 008135          333 WESKTWDLDSKLGRKFKELEA-LSMECNQ  360 (576)
Q Consensus       333 l~~~~~~~e~~l~~~~e~le~-l~~~yn~  360 (576)
                      +.....+.|.........|.. ++..||.
T Consensus       111 ak~~l~~aE~~~e~~~~~L~~~Il~RYHE  139 (207)
T PF05546_consen  111 AKEALEEAEEKVEEAFDDLMRAILTRYHE  139 (207)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333444444444444443 3455663

The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].

>PRK03947 prefoldin subunit alpha; Reviewed

Probab=80.38  E-value=44  Score=30.09  Aligned_cols=28  Identities=21%  Similarity=0.373  Sum_probs=11.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008135          309 VERMRRELQAVERDIADAENARNEWESK  336 (576)
Q Consensus       309 i~r~~~Er~~L~~~l~~~e~~~~~l~~~  336 (576)
                      ++.+....+.++..++.+...+..+...
T Consensus         8 l~~l~~~~~~l~~~~~~l~~~~~~l~~~   35 (140)
T PRK03947          8 LEELAAQLQALQAQIEALQQQLEELQAS   35 (140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333334444444444444444443333

>PRK10929 putative mechanosensitive channel protein; Provisional

Probab=80.17  E-value=1.5e+02  Score=36.22  Aligned_cols=31  Identities=23%  Similarity=0.254  Sum_probs=15.6

Q ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135          427 AAKIEGKRKRIDALQFHINEMETQLNLLSKE  457 (576)
Q Consensus       427 ~~~ieek~~~l~~Le~kl~~l~~ql~~lk~e  457 (576)
                      +.+.+....++..++..++.+...++..+.+
T Consensus       207 ~~q~dl~~~~~~~l~~~~~~Lq~~in~kR~~  237 (1109)
T PRK10929        207 RLRSELAKKRSQQLDAYLQALRNQLNSQRQR  237 (1109)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333444455555555555555555554443

>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway

Probab=80.12  E-value=36  Score=28.95  Aligned_cols=76  Identities=14%  Similarity=0.305  Sum_probs=45.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 008135          269 KLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQ--TINARDVERMRRELQAVERDIADAENARNEWESKTWDLDSKL  344 (576)
Q Consensus       269 ~~l~~l~~Ele~~~~e~~~l~~e~~eL~~~l~~Q--~~s~~di~r~~~Er~~L~~~l~~~e~~~~~l~~~~~~~e~~l  344 (576)
                      ..+.....++......+..+.....++...+...  |+|+.++.....-+..|...+......+..++..+......+
T Consensus         5 ~~l~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~r~~l   82 (123)
T PF02050_consen    5 QELAEAQQELQEAEEQLEQLQQERQEYQEQLSESQQGVSVAQLRNYQRYISALEQAIQQQQQELERLEQEVEQAREEL   82 (123)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----SGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444555555555555555555554444433  588888888887788888888777776666666554444433

Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	576
2ve7_A	315	Crystal Structure Of A Bonsai Version Of The Human		2e-10
2igp_A	120	Crystal Structure Of Hec1 Ch Domain Length = 120		8e-09

>pdb|2VE7|A Chain A, Crystal Structure Of A Bonsai Version Of The Human Ndc80 Complex Length = 315

Iteration: 1
 Score = 63.9 bits (154), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 50/201 (24%), Positives = 91/201 (45%), Gaps = 34/201 (16%)
Query: 57  DRSHQSSAIRAINAHLSSHSFHIAFPLK--QVPSVKDITDVIKFLISQLDYPST----TK 110
           D++     IR +   L+ + +     +K  Q PSVKD   +  FL   L  PS     TK
Sbjct: 10  DKAFIQQCIRQLCEFLTENGYAHNVSMKSLQAPSVKDFLKIFTFLYGFL-CPSYELPDTK 68
Query: 111 FEEDLFVVLKSLSCPFKINKSTLRSPNSPHNWPAYLALIHWLVQIASYNYHLTTNSKAF- 169
           FEE++  + K L  PF ++KS++ +  +PH WP  +A + WL+     +  +  +S  F 
Sbjct: 69  FEEEVPRIFKDLGYPFALSKSSMYTVGAPHTWPHIVAALVWLIDCIKIHTAMKESSPLFD 128
Query: 170 ------------VENNSMYM-YASDSYLNYIEGKDG-------------DVDNIDKGFIE 203
                       + +N +++ Y    Y +++ G D              D+ N+D   +E
Sbjct: 129 DGQPWGEETEDGIMHNKLFLDYTIKCYESFMSGADSFDEMNAELQSKLKDLFNVDAFKLE 188
Query: 204 KLEKEKENVSEYVEELKKKVS 224
            LE +   ++E +  L+++ S
Sbjct: 189 SLEAKNRALNEQIARLEQERS 209

>pdb|2IGP|A Chain A, Crystal Structure Of Hec1 Ch Domain Length = 120

Iteration: 1
 Score = 58.9 bits (141), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 34/103 (33%), Positives = 54/103 (52%), Gaps = 7/103 (6%)
Query: 57  DRSHQSSAIRAINAHLSSHSFHIAFPLK--QVPSVKDITDVIKFLISQLDYPS----TTK 110
           D++     IR +   L+ + +     +K  Q PSVKD   +  FL   L  PS     TK
Sbjct: 12  DKAFIQQCIRQLCEFLTENGYAHNVSMKSLQAPSVKDFLKIFTFLYGFL-CPSYELPDTK 70
Query: 111 FEEDLFVVLKSLSCPFKINKSTLRSPNSPHNWPAYLALIHWLV 153
           FEE++  + K L  PF ++KS++ +  +PH WP  +A + WL+
Sbjct: 71  FEEEVPRIFKDLGYPFALSKSSMYTVGAPHTWPHIVAALVWLI 113

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	576
2ve7_A	315	Kinetochore protein HEC1, kinetochore protein SPC;	2e-32
2igp_A	120	Retinoblastoma-associated protein HEC; calponin ho	3e-29
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-13
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-08
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	1e-12
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	1e-11
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	7e-09
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	1e-08
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	2e-07
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	2e-07
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	5e-07
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	6e-07
3lvg_D	190	LCB, clathrin light chain B; SELF assembly, coated	2e-04
1hci_A	476	Alpha-actinin 2; triple-helix coiled coil, contrac	4e-04

>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C* Length = 315

 Score =  126 bits (317), Expect = 2e-32
 Identities = 53/296 (17%), Positives = 112/296 (37%), Gaps = 27/296 (9%)

Query: 56  TDRSHQSSAIRAINAHLSSHSF--HIAFPLKQVPSVKDITDVIKFLISQLDYP---STTK 110
            D++     IR +   L+ + +  +++    Q PSVKD   +  FL   L        TK
Sbjct: 9   NDKAFIQQCIRQLCEFLTENGYAHNVSMKSLQAPSVKDFLKIFTFLYGFLCPSYELPDTK 68

Query: 111 FEEDLFVVLKSLSCPFKINKSTLRSPNSPHNWPAYLALIHWLVQIASYNYHLTTNSKAFV 170
           FEE++  + K L  PF ++KS++ +  +PH WP  +A + WL+     +  +  +S  F 
Sbjct: 69  FEEEVPRIFKDLGYPFALSKSSMYTVGAPHTWPHIVAALVWLIDCIKIHTAMKESSPLFD 128

Query: 171 ENNSM--------------YMYASDSYLNYIEGKDGDVDNIDKGFIEKLEKEKENVSEYV 216
           +                    Y    Y +++ G D   D ++     KL+      +  +
Sbjct: 129 DGQPWGEETEDGIMHNKLFLDYTIKCYESFMSGAD-SFDEMNAELQSKLKDLFNVDAFKL 187

Query: 217 EELKKKVSEMEGAMTGPTEREKLEKEKCVLEE-DLNKFNAIIGELNMRKEKMEKLVEEKE 275
           E L+ K   +        +  +LE+E+    + +  +   +    ++ K+++   + +  
Sbjct: 188 ESLEAKNRALN------EQIARLEQERSTANKANAERLKRLQKSADLYKDRLGLEIRKIY 241

Query: 276 REIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRRELQAVERDIADAENARN 331
            E  + +  +         F   + L      +V      L+ +     +     N
Sbjct: 242 GEKLQFIFTNIDPKNPESPFMFSLHLNEARDYEVSDSAPHLEGLAEFQENVRKTNN 297

>2igp_A Retinoblastoma-associated protein HEC; calponin homology (CH) domain, alpha helices, cell cycle; 1.80A {Homo sapiens} Length = 120

 Score =  111 bits (278), Expect = 3e-29
 Identities = 32/109 (29%), Positives = 55/109 (50%), Gaps = 5/109 (4%)

Query: 56  TDRSHQSSAIRAINAHLSSHSF--HIAFPLKQVPSVKDITDVIKFLISQLD--YPST-TK 110
            D++     IR +   L+ + +  +++    Q PSVKD   +  FL   L   Y    TK
Sbjct: 11  NDKAFIQQCIRQLCEFLTENGYAHNVSMKSLQAPSVKDFLKIFTFLYGFLCPSYELPDTK 70

Query: 111 FEEDLFVVLKSLSCPFKINKSTLRSPNSPHNWPAYLALIHWLVQIASYN 159
           FEE++  + K L  PF ++KS++ +  +PH WP  +A + WL+     +
Sbjct: 71  FEEEVPRIFKDLGYPFALSKSSMYTVGAPHTWPHIVAALVWLIDCIKIH 119

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 71.0 bits (173), Expect = 6e-13
 Identities = 81/506 (16%), Positives = 169/506 (33%), Gaps = 129/506 (25%)

Query: 89  VKDITDVIKFLISQLDYPSTTKFEEDLFVVLKSLSCPFKINKSTLRSPNSPHNWPAYLAL 148
            KD+ D+ K ++S+ +        + + +   ++S   ++  + L              +
Sbjct: 35  CKDVQDMPKSILSKEEI-------DHIIMSKDAVSGTLRLFWTLLSKQEE--------MV 79

Query: 149 IHWLVQIASYNYHLTTNSKAFVENNSMYMYASDSYLNYIEGKD---GDVDNIDKGFIEKL 205
             ++ ++   NY    +     E        S     YIE +D    D     K  + +L
Sbjct: 80  QKFVEEVLRINYKFLMSPIK-TEQRQ----PSMMTRMYIEQRDRLYNDNQVFAKYNVSRL 134

Query: 206 EKEKENVSEYVEELKKKVSE-----------MEGAMTGPTEREK--LEKEKCVLEEDLNK 252
           +           +L++ + E           + G+  G     K  +  + C+  +   K
Sbjct: 135 QP--------YLKLRQALLELRPAKNVLIDGVLGS--G-----KTWVALDVCLSYKVQCK 179

Query: 253 FNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVERM 312
            +  I  LN++     + V E  +++  +++ +        +    +KL+  + +    +
Sbjct: 180 MDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNW---TSRSDHSSNIKLRIHSIQA--EL 234

Query: 313 RRELQAVERDIADAENA----RNEWESKTWDLDSKLGRKFKELEALSMEC--------NQ 360
           RR L++        EN      N   +K W+             A ++ C         Q
Sbjct: 235 RRLLKS-----KPYENCLLVLLNVQNAKAWN-------------AFNLSCKILLTTRFKQ 276

Query: 361 AMKRLKLATEIQYSLN--SNGSTPSEVMGVDYKSTLKPALESFADDVKRSSVEKLEELIS 418
               L  AT    SL+  S   TP EV  +     L   L+    D+ R  +      +S
Sbjct: 277 VTDFLSAATTTHISLDHHSMTLTPDEVKSL-----LLKYLDCRPQDLPREVLTTNPRRLS 331

Query: 419 LQQQSSEMAAKIEGKRKRIDALQFHINE------METQLNLLS-KETQEITKRCA----- 466
           +      +A  I       D  + H+N       +E+ LN+L   E +++  R +     
Sbjct: 332 I------IAESIRDGLATWDNWK-HVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPS 384

Query: 467 -------------EEAKKMEEDIQTEAHNLDMVEREAVEVLKASESKFQEAIRQCEEEIQ 513
                        +  K     +  + H   +VE++  E   +  S + E   + E E  
Sbjct: 385 AHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYA 444

Query: 514 IRALDLFALVDSVSKYKERMESKISK 539
           +      ++VD  +  K      +  
Sbjct: 445 LHR----SIVDHYNIPKTFDSDDLIP 466

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 54.1 bits (129), Expect = 9e-08
 Identities = 62/451 (13%), Positives = 139/451 (30%), Gaps = 114/451 (25%)

Query: 181 DSYLNYIEGKDGDV--DNIDKGFIEKLEKEKENVSEYVEELKKKV---SEMEGAMTGPTE 235
           D      + +  D+     D  F++  +       + V+++ K +    E++  +     
Sbjct: 8   DFETGEHQYQYKDILSVFEDA-FVDNFD------CKDVQDMPKSILSKEEIDHIIMSKDA 60

Query: 236 REKLEKE-KCVLEEDLNKFNAIIGELNMRKEK---MEKLVEE---KEREIGKKVEEHKRI 288
                +    +L +        + E+ +R      M  +  E           +E+  R+
Sbjct: 61  VSGTLRLFWTLLSKQEEMVQKFVEEV-LRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRL 119

Query: 289 CEENEEFKK----RVKLQTINARDVERMRRELQAVERDIADAENARNEWES--------K 336
             +N+ F K    R++          ++R+ L  +            +           K
Sbjct: 120 YNDNQVFAKYNVSRLQP-------YLKLRQALLELR---------PAKNVLIDGVLGSGK 163

Query: 337 TWDLDSKLGRKFKELEA-------LSM-ECNQAMKRLKLATEIQYSLNSNGSTPSEVMGV 388
           TW +   +   +K           L++  CN     L++  ++ Y ++ N ++ S     
Sbjct: 164 TW-VALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRS----- 217

Query: 389 DYKSTLKPALESFADDVKRSSVEKL--EELISLQQ-QSSEMAAKIEGK-------RKR-- 436
           D+ S +K  + S   +++R    K     L+ L   Q+++               R +  
Sbjct: 218 DHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQV 277

Query: 437 IDAL----QFHINEMETQLNLLSKETQEITKRCAEEAKKMEEDIQTEAHN-----LDMVE 487
            D L      HI+     + L   E + +  +  +      +D+  E        L ++ 
Sbjct: 278 TDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCR---PQDLPREVLTTNPRRLSIIA 334

Query: 488 REAVEVLKASE-------SKFQEAIRQC-----EEEIQIRALDLFALVDSVSKYKERMES 535
               + L   +        K    I          E +     L     S          
Sbjct: 335 ESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSA--------- 385

Query: 536 KISKM-------NKGISETALTVSEAYKNSL 559
            I  +       +   S+  + V++ +K SL
Sbjct: 386 HIPTILLSLIWFDVIKSDVMVVVNKLHKYSL 416

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 70.2 bits (172), Expect = 1e-12
 Identities = 41/278 (14%), Positives = 108/278 (38%), Gaps = 42/278 (15%)

Query: 203  EKLEKEKENVSEYVEELKKKVSEMEGAMTGPTEREKLEKEKCVLEEDLNKFNAIIGELNM 262
            ++L+ EK+ + + + +L++++ E E        R+KL+ EK   +  + K      ++ +
Sbjct: 944  QQLQAEKKKMQQQMLDLEEQLEEEE------AARQKLQLEKVTADGKIKKMED---DILI 994

Query: 263  RKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRRELQAVERD 322
             +++  KL +E++    +  +    + EE E+ K   KL+  +   +  +   L+  E+ 
Sbjct: 995  MEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKS 1054

Query: 323  IADAENARNEWESKTWDLDSKLGRKFKELEALSMECNQAMKRLKLATEIQYSLNSNGSTP 382
              + E  + + E ++ DL  ++     ++  L  +  +  + L+                
Sbjct: 1055 RQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQ---------------- 1098

Query: 383  SEVMGVDYKSTLKPALESFADDVKRSSVEKLEELISLQQQSSEMAAKIEGKRKRIDALQF 442
                          A  +  +D        L+++  L+   S++   +E ++   +  + 
Sbjct: 1099 --------------AALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEK 1144

Query: 443  HINEMETQLNLLSK---ETQEITKRCAEEAKKMEEDIQ 477
               ++  +L  L     +T + T    E      +D  
Sbjct: 1145 QKRDLSEELEALKTELEDTLDTTATQQELRGSDYKDDD 1182

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 66.4 bits (162), Expect = 1e-11
 Identities = 56/309 (18%), Positives = 116/309 (37%), Gaps = 32/309 (10%)

Query: 203  EKLEKEKENVSEYVEE---LKKKVSEMEGAMTGPTER-EKLEKEKCVLEEDLNKFNAIIG 258
            EKL+ E E  +E  E    L  K  E+E  +     R E+ E+    L+ +  K    + 
Sbjct: 899  EKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQML 958

Query: 259  ELNMRKEKME----KLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRR 314
            +L  + E+ E    KL  EK    GK  +    I    ++  K  K + +    V  +  
Sbjct: 959  DLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTT 1018

Query: 315  ELQAVERDIADAENARNEWESKTWDLDSKLGRKFKELEALSMECNQAMKRLKLATEIQYS 374
             L   E    +    +N+ ES   +L+ +L    K+ E    E  +  ++L+        
Sbjct: 1019 NLAEEEEKAKNLTKLKNKHESMISELEVRL----KKEEKSRQELEKIKRKLE-------- 1066

Query: 375  LNSNGSTPSEVMGVDYKSTLKPALESFADDVKRSSVEKLEELISLQQQSSEMAAKIEGKR 434
               +     ++        L+  +      + +    K EEL +   +  +  ++     
Sbjct: 1067 -GESSDLHEQIA------ELQAQIAELKAQLAK----KEEELQAALARLEDETSQKNNAL 1115

Query: 435  KRIDALQFHINEMETQLNLLSKETQEITKRCAEEAKKMEEDIQTEAHNLDMVEREAVEVL 494
            K+I  L+ HI++++  L        +  K+  + ++++E  ++TE  +         E+ 
Sbjct: 1116 KKIRELESHISDLQEDLESEKAARNKAEKQKRDLSEELEA-LKTELEDTLDTTATQQELR 1174

Query: 495  KASESKFQE 503
             +      +
Sbjct: 1175 GSDYKDDDD 1183

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 57.9 bits (140), Expect = 7e-09
 Identities = 54/336 (16%), Positives = 125/336 (37%), Gaps = 42/336 (12%)

Query: 235  EREKLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEE 294
            E +  ++E    +E   K  A + EL   ++K  +L EEK   + +K++    +  E EE
Sbjct: 858  EMQAKDEELQRTKERQQKAEAELKEL---EQKHTQLCEEKNL-LQEKLQAETELYAEAEE 913

Query: 295  FKKRVKLQTINARD-VERMRRELQAVERDIADAENARNEWESKTWDLDSKLGRKFKELEA 353
             + R+  +     + +  M   ++  E      +  + + + +  DL+ +L  +    + 
Sbjct: 914  MRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQK 973

Query: 354  LSMECNQAMKRLKLATEIQYSLNSNGSTPSEVMGVDYKSTLKPALESFADDVKRSSVEKL 413
            L +E   A  ++K                        +  +    +      K    + L
Sbjct: 974  LQLEKVTADGKIK----------------------KMEDDILIMEDQNNKLTKE--RKLL 1009

Query: 414  EELIS-LQQQSSEMAAKIEGKRKRIDALQFHINEMETQLNLLSKETQEITKRC------A 466
            EE +S L    +E   K +   K  +  +  I+E+E +L    K  QE+ K        +
Sbjct: 1010 EERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGES 1069

Query: 467  EEAKKMEEDIQTEAHNLDMVEREAVEVLKASESKFQEAIRQCEE------EIQIRALDLF 520
             +  +   ++Q +   L     +  E L+A+ ++ ++   Q         E++    DL 
Sbjct: 1070 SDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQ 1129

Query: 521  ALVDSVSKYKERMESKISKMNKGISETALTVSEAYK 556
              ++S    + + E +   +++ +      + +   
Sbjct: 1130 EDLESEKAARNKAEKQKRDLSEELEALKTELEDTLD 1165

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 56.8 bits (137), Expect = 1e-08
 Identities = 45/188 (23%), Positives = 78/188 (41%), Gaps = 19/188 (10%)

Query: 202  IEKLEKEKENVSEYVEELKKKVSEMEGAMTGPTE-REKLEKEKCVLEEDLNKFNAIIGEL 260
              KL KE++ + E V +L   ++E E      T+ + K E     LE  L K      EL
Sbjct: 999  NNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQEL 1058

Query: 261  NMRKEKMEK-------LVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMR 313
               K K+E         + E + +I +   +  +  EE +    R++ +T    +  +  
Sbjct: 1059 EKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKI 1118

Query: 314  RELQA----VERDIADAENARNEWESKTWDLDSKLGRKFKELEALSMECNQAMKRLKLAT 369
            REL++    ++ D+   + ARN+ E +  DL        +ELEAL  E    +       
Sbjct: 1119 RELESHISDLQEDLESEKAARNKAEKQKRDLS-------EELEALKTELEDTLDTTATQQ 1171

Query: 370  EIQYSLNS 377
            E++ S   
Sbjct: 1172 ELRGSDYK 1179

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 53.2 bits (128), Expect = 2e-07
 Identities = 20/116 (17%), Positives = 53/116 (45%), Gaps = 7/116 (6%)

Query: 202  IEKLEKEKENVSEYVEELKKKVSEMEGAMTGPTEREKLEKEKCVLEEDLNKFNAIIGELN 261
            +   E+E +N +  V  L+++++++        E  + + EK  +EE  +K+     +L 
Sbjct: 972  LRMSEEEAKNATNRVLSLQEEIAKLR------KELHQTQTEKKTIEEWADKYKHETEQLV 1025

Query: 262  MRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRRELQ 317
               ++   L++ ++ E+ +++ +  +   E  E K   + + +   D+   R   Q
Sbjct: 1026 SELKEQNTLLKTEKEELNRRIHDQAKEITETMEKKLVEETKQLEL-DLNDERLRYQ 1080

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 53.2 bits (128), Expect = 2e-07
 Identities = 43/283 (15%), Positives = 96/283 (33%), Gaps = 42/283 (14%)

Query: 236  REKLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEF 295
               + K    + +      A++    +R +    L E K   I K V         +   
Sbjct: 828  MYVVRKRYQCMRDATIALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTL 887

Query: 296  KKRVKLQ-TINARDVERMRRELQAVERDIADAENARNEWESKTWDLDSKLGRKFKELEAL 354
            K  V LQ        +R  ++L+   R +   +      E+K   L  K+  + KE ++L
Sbjct: 888  KAIVYLQCCYRRMMAKRELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSL 947

Query: 355  SMECNQAMKRLKLATEIQYSLNSNGSTPSEVMGVDYKSTLKPALESFADDVKRSSVEKLE 414
                 + M  L++                          L+                 +E
Sbjct: 948  L----EKMNNLEITYS------------------TETEKLR---------------SDVE 970

Query: 415  ELISLQQQSSEMAAKIEGKRKRIDALQFHINEMETQLNLLSKETQEITKRCAE---EAKK 471
             L   ++++     ++   ++ I  L+  +++ +T+   + +   +      +   E K+
Sbjct: 971  RLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKE 1030

Query: 472  MEEDIQTEAHNLD-MVEREAVEVLKASESKFQEAIRQCEEEIQ 513
                ++TE   L+  +  +A E+ +  E K  E  +Q E ++ 
Sbjct: 1031 QNTLLKTEKEELNRRIHDQAKEITETMEKKLVEETKQLELDLN 1073

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 51.6 bits (124), Expect = 5e-07
 Identities = 28/150 (18%), Positives = 57/150 (38%), Gaps = 3/150 (2%)

Query: 217  EELKKKVSEMEGAMTGPTEREKLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKER 276
             ELKK   E             LE +   L+  +++ N     L  +   +E     +  
Sbjct: 904  RELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETE 963

Query: 277  EIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRRELQAVERDIADAENARNEWESK 336
            ++   VE  +   EE +    RV        ++ ++R+EL   + +    E   ++++ +
Sbjct: 964  KLRSDVERLRMSEEEAKNATNRVLSLQ---EEIAKLRKELHQTQTEKKTIEEWADKYKHE 1020

Query: 337  TWDLDSKLGRKFKELEALSMECNQAMKRLK 366
            T  L S+L  +   L+    E N+ +    
Sbjct: 1021 TEQLVSELKEQNTLLKTEKEELNRRIHDQA 1050

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 51.6 bits (124), Expect = 6e-07
 Identities = 21/170 (12%), Positives = 60/170 (35%), Gaps = 10/170 (5%)

Query: 202  IEKLEKEKENVSEYVEELKKKVSEMEGAMTGPTEREKLEKEKCVLEEDLNKFNAIIGELN 261
            +E+ +K    +   + +L++K+ E         E + L ++   LE   +     +    
Sbjct: 916  VERYKKLHIGLENKIMQLQRKIDEQN------KEYKSLLEKMNNLEITYSTETEKLRSDV 969

Query: 262  MRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVK-LQTINARDVERMRRELQAVE 320
             R    E+  +     +    EE  ++ +E  + +   K ++    +      + +  ++
Sbjct: 970  ERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELK 1029

Query: 321  RDIADAENARNEWESKTWDLDSKLGRKFK---ELEALSMECNQAMKRLKL 367
                  +  + E   +  D   ++    +     E   +E +   +RL+ 
Sbjct: 1030 EQNTLLKTEKEELNRRIHDQAKEITETMEKKLVEETKQLELDLNDERLRY 1079

>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190

 Score = 41.7 bits (97), Expect = 2e-04
 Identities = 15/73 (20%), Positives = 39/73 (53%), Gaps = 6/73 (8%)

Query: 203 EKLEKEKENVSEYVEELKKKVSEMEGAMTGPTEREKLEKEKCVLEEDLNKFNAIIGELNM 262
           ++L +E E++ ++ EE +K++ E++ A      +   ++ +   ++DL ++N    E  +
Sbjct: 78  DRLTQEPESIRKWREEQRKRLQELDAA-----SKVMEQEWREKAKKDLEEWNQRQSE-QV 131

Query: 263 RKEKMEKLVEEKE 275
            K K+   + +K 
Sbjct: 132 EKNKINNRIADKA 144

>1hci_A Alpha-actinin 2; triple-helix coiled coil, contractIle protein, muscle, Z- LINE, actin-binding protein; 2.8A {Homo sapiens} SCOP: a.7.1.1 a.7.1.1 a.7.1.1 a.7.1.1 Length = 476

 Score = 42.2 bits (98), Expect = 4e-04
 Identities = 47/344 (13%), Positives = 126/344 (36%), Gaps = 19/344 (5%)

Query: 184 LNYIEGKDGDVDNIDKGFIEKLEKEKENVSEYVEELKKKVSEMEGAMTGPTE---REKLE 240
           +  ++ K  D  +  +       +EK  +      L+ K+         P+E      + 
Sbjct: 43  MQAMQKKLEDFRDYRRKHKPPKVQEKCQLEINFNTLQTKLRISNRPAFMPSEGKMVSDIA 102

Query: 241 KEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVK 300
                LE+    +   +     R E++E L E+  +    K   H+      E+   +  
Sbjct: 103 GAWQRLEQAEKGYEEWLLNEIRRLERLEHLAEKFRQ----KASTHETWAYGKEQILLQKD 158

Query: 301 LQTINARDVERMRRELQAVERDI-----------ADAENARNEWESKTWDLDSKLGRKFK 349
            ++ +  +V  + R+ +A E D+           A A+           +++ +  +   
Sbjct: 159 YESASLTEVRALLRKHEAFESDLAAHQDRVEQIAAIAQELNELDYHDAVNVNDRCQKICD 218

Query: 350 ELEALSMECNQAMKRLKLATEIQYSLNSNGSTPSEVMGVDYKSTLKPALESFADDVKRSS 409
           + + L     +  + L+   ++  +++      ++     + + ++ A+E   D     S
Sbjct: 219 QWDRLGTLTQKRREALERMEKLLETIDQLHLEFAKRA-APFNNWMEGAMEDLQDMFIVHS 277

Query: 410 VEKLEELISLQQQSSEMAAKIEGKRKRIDALQFHINEMETQLNLLSKETQEITKRCAEEA 469
           +E+++ LI+  +Q      + +G+R+ I A+Q  + ++    N+    +   +    +E 
Sbjct: 278 IEEIQSLITAHEQFKATLPEADGERQSIMAIQNEVEKVIQSYNIRISSSNPYSTVTMDEL 337

Query: 470 KKMEEDIQTEAHNLDMVEREAVEVLKASESKFQEAIRQCEEEIQ 513
           +   + ++      D   +E +    A+E   ++   Q      
Sbjct: 338 RTKWDKVKQLVPIRDQSLQEELARQHANERLRRQFAAQANAIGP 381

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	576
2ve7_A	315	Kinetochore protein HEC1, kinetochore protein SPC;	100.0
2igp_A	120	Retinoblastoma-associated protein HEC; calponin ho	100.0
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	98.08
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	97.59
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	97.2
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	96.56
2v71_A	189	Nuclear distribution protein NUDE-like 1; developm	96.19
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	95.76
3o0z_A	168	RHO-associated protein kinase 1; coiled-coil, tran	95.68
3o0z_A	168	RHO-associated protein kinase 1; coiled-coil, tran	95.56
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	95.55
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	95.52
3tnu_B	129	Keratin, type II cytoskeletal 5; coiled-coil, stru	94.06
3u1c_A	101	Tropomyosin alpha-1 chain; anti-parallel coiled co	93.78
3tnu_A	131	Keratin, type I cytoskeletal 14; coiled-coil, stru	93.53
3u1c_A	101	Tropomyosin alpha-1 chain; anti-parallel coiled co	93.34
2fxo_A	129	Myosin heavy chain, cardiac muscle beta isoform; c	93.31
2v71_A	189	Nuclear distribution protein NUDE-like 1; developm	93.26
3okq_A	141	BUD site selection protein 6; coiled-coil, protein	93.05
4gkw_A	167	Spindle assembly abnormal protein 6; double helix,	92.49
3u59_A	101	Tropomyosin beta chain; muscle contraction, actin,	92.45
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	91.39
3ol1_A	119	Vimentin; structural genomics, PSI-2, protein stru	90.42
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	90.15
3ghg_A	562	Fibrinogen alpha chain; triple-stranded coiled coi	90.1
2v66_B	111	Nuclear distribution protein NUDE-like 1; structur	89.72
2jee_A	81	YIIU; FTSZ, septum, coiled-coil, cell division, ce	89.35
2fxo_A	129	Myosin heavy chain, cardiac muscle beta isoform; c	89.27
1ic2_A	81	Tropomyosin alpha chain, skeletal muscle; alpha-he	89.19
3ghg_A	562	Fibrinogen alpha chain; triple-stranded coiled coi	88.64
2lw1_A	89	ABC transporter ATP-binding protein UUP; ABC REG s	88.62
3tnu_B	129	Keratin, type II cytoskeletal 5; coiled-coil, stru	88.45
3tnu_A	131	Keratin, type I cytoskeletal 14; coiled-coil, stru	87.33
3s84_A	273	Apolipoprotein A-IV; four helix bundle, transport	87.14
3hnw_A	138	Uncharacterized protein; coiled-coil, structural g	87.13
2efr_A	155	General control protein GCN4 and tropomyosin 1 Al;	87.12
3nr7_A	86	DNA-binding protein H-NS; dimer, oligomerisation,	86.93
3mq9_A	471	Bone marrow stromal antigen 2 fused to maltose-BI	86.18
3mq7_A	121	Bone marrow stromal antigen 2; HIV, antiviral prot	86.09
3a7p_A	152	Autophagy protein 16; coiled-coil, coiled coil, cy	85.6
3hnw_A	138	Uncharacterized protein; coiled-coil, structural g	85.41
2v4h_A	110	NF-kappa-B essential modulator; transcription, met	84.67
3i00_A	120	HIP-I, huntingtin-interacting protein 1; transcrip	84.02
3ol1_A	119	Vimentin; structural genomics, PSI-2, protein stru	84.0
2jee_A	81	YIIU; FTSZ, septum, coiled-coil, cell division, ce	83.54
1m1j_B	464	Fibrinogen beta chain; coiled coils, disulfide rin	83.35
3s4r_A	93	Vimentin; alpha-helix, cytoskeleton, intermediate	81.71
2efr_A	155	General control protein GCN4 and tropomyosin 1 Al;	81.27
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	81.14
2v4h_A	110	NF-kappa-B essential modulator; transcription, met	80.15

>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*

Probab=100.00  E-value=1.5e-42  Score=354.86  Aligned_cols=176  Identities=24%  Similarity=0.481  Sum_probs=150.1

Q ss_pred             CCCCCCChHHHHHHHHHHHHHhhhCCCC--CCCCCCCCCCHHHHHHHHHHHHHcCCCC--C-CcChHhHHHHHHHhcCCC
Q 008135           51 AADLYTDRSHQSSAIRAINAHLSSHSFH--IAFPLKQVPSVKDITDVIKFLISQLDYP--S-TTKFEEDLFVVLKSLSCP  125 (576)
Q Consensus        51 d~rpl~dk~~q~~~~~~i~~fL~~~~~~--~~~k~l~~pt~k~f~~i~~~L~~~ld~~--~-~~k~eeev~~~lk~l~yP  125 (576)
                      |||||+||+||++|++.|++||+++||+  ++.+.|++||+|||+.||+|||++|||.  | +.++|+|||.+||.||||
T Consensus         4 DpRpl~Dk~~q~~~~~~i~~fL~~~~~~~~is~k~L~~Pt~KdF~~if~fL~~~idp~~~~~~~k~eeev~~~lK~L~YP   83 (315)
T 2ve7_A            4 DPRPLNDKAFIQQCIRQLCEFLTENGYAHNVSMKSLQAPSVKDFLKIFTFLYGFLCPSYELPDTKFEEEVPRIFKDLGYP   83 (315)
T ss_dssp             CCSCTTCHHHHHHHHHHHHHHHHHTTCSSCCCTGGGSSCCHHHHHHHHHHHHTTTSTTCCCCSSCHHHHHHHHHHHTTCS
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHhcCCCCCCCcccCCCCCHHHHHHHHHHHHHhcCCCCccCCCChHHHHHHHHHHcCCC
Confidence            8999999999999999999999999997  6788899999999999999999999954  5 479999999999999999


Q ss_pred             CcccccccccCCCCCChHHHHHHHHHHHHHHHHhhhhhhCCcc--------------cccchHHHHHHHHHHHHHHcCCC
Q 008135          126 FKINKSTLRSPNSPHNWPAYLALIHWLVQIASYNYHLTTNSKA--------------FVENNSMYMYASDSYLNYIEGKD  191 (576)
Q Consensus       126 ~~i~ks~l~~~g~~h~wp~~l~~L~WLv~l~~~~~~~~~~~~~--------------~~~~~~~~~y~~~~Y~~fl~g~d  191 (576)
                      |+||||+|+|||+||+||++||||+|||+|+++...+..++..              ...+.+||+|+.+||+.||.|+|
T Consensus        84 ~~isKS~L~a~g~pHsWp~~Lg~L~WLvel~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~y~~~~Y~~fl~~~d  163 (315)
T 2ve7_A           84 FALSKSSMYTVGAPHTWPHIVAALVWLIDCIKIHTAMKESSPLFDDGQPWGEETEDGIMHNKLFLDYTIKCYESFMSGAD  163 (315)
T ss_dssp             SCCCHHHHHTTTSTTTHHHHHHHHHHHHHHHHHHHHHHHCC---------CCBCTTSCBSHHHHHHHHHHHHHHHHHTCS
T ss_pred             ceeCHHHhcCCCCCCcHHHHHHHHHHHHHHHHHHHHhhhccccccchhcccccccccchHHHHHHHHHHHHHHHHHhCCc
Confidence            9999999999999999999999999999999998877554321              01245799999999999999996


Q ss_pred             CCchhhhHHHHHHHHH-------HHHhHHHHHHHHHHHHHHHH
Q 008135          192 GDVDNIDKGFIEKLEK-------EKENVSEYVEELKKKVSEME  227 (576)
Q Consensus       192 ~~~~~l~~~~~~kl~~-------~~~~~~~~~~~L~~~~~~le  227 (576)
                      + ++++++++.+++.+       +++++.++++.|++++++|+
T Consensus       164 ~-~~~~~~e~~~~~~~~~n~~~~eie~L~~~~~~L~eEi~~Le  205 (315)
T 2ve7_A          164 S-FDEMNAELQSKLKDLFNVDAFKLESLEAKNRALNEQIARLE  205 (315)
T ss_dssp             C-CHHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             c-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4 47899999888887       44445555555555555544

>2igp_A Retinoblastoma-associated protein HEC; calponin homology (CH) domain, alpha helices, cell cycle; 1.80A {Homo sapiens}

Probab=100.00  E-value=1.2e-36  Score=265.75  Aligned_cols=109  Identities=28%  Similarity=0.542  Sum_probs=104.2

Q ss_pred             CCCCCCChHHHHHHHHHHHHHhhhCCCC--CCCCCCCCCCHHHHHHHHHHHHHcCCCC--C-CcChHhHHHHHHHhcCCC
Q 008135           51 AADLYTDRSHQSSAIRAINAHLSSHSFH--IAFPLKQVPSVKDITDVIKFLISQLDYP--S-TTKFEEDLFVVLKSLSCP  125 (576)
Q Consensus        51 d~rpl~dk~~q~~~~~~i~~fL~~~~~~--~~~k~l~~pt~k~f~~i~~~L~~~ld~~--~-~~k~eeev~~~lk~l~yP  125 (576)
                      |||||+||+||++|++.|++||.++||+  ++.+.|++||+|||+.||+||+++||+.  | +.++||||+.+||.||||
T Consensus         6 DpRpl~Dk~~q~~~~~~i~~fL~~~~~~~~is~k~L~~Pt~kdF~~if~fL~~~idp~~~~~~~~~eeev~~~lK~L~YP   85 (120)
T 2igp_A            6 DPRPLNDKAFIQQCIRQLCEFLTENGYAHNVSMKSLQAPSVKDFLKIFTFLYGFLCPSYELPDTKFEEEVPRIFKDLGYP   85 (120)
T ss_dssp             CCCCTTCHHHHHHHHHHHHHHHHHTTCSSCCCTTTTSSCCHHHHHHHHHHHHTTTCTTCCCCCTTHHHHHHHHHHHTTCC
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHcCCCCCCCccccCCCCHHHHHHHHHHHHHhcCCCCccCCCChHHHHHHHHHHcCCC
Confidence            9999999999999999999999999997  6788999999999999999999999954  5 479999999999999999


Q ss_pred             CcccccccccCCCCCChHHHHHHHHHHHHHHHHh
Q 008135          126 FKINKSTLRSPNSPHNWPAYLALIHWLVQIASYN  159 (576)
Q Consensus       126 ~~i~ks~l~~~g~~h~wp~~l~~L~WLv~l~~~~  159 (576)
                      |.|+||+|+|||+||+||++||||+|||+|++|.
T Consensus        86 ~~isKS~L~a~g~pHsWp~~L~~L~WLvel~~~~  119 (120)
T 2igp_A           86 FALSKSSMYTVGAPHTWPHIVAALVWLIDCIKIH  119 (120)
T ss_dssp             SCCCHHHHHTTTSTTTHHHHHHHHHHHHHHHHHC
T ss_pred             ceeCHHHhcCCCCCccHHHHHHHHHHHHHHHHhh
Confidence            9999999999999999999999999999999874

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A

Probab=98.08  E-value=9.3e-06  Score=97.10  Aligned_cols=11  Identities=18%  Similarity=0.377  Sum_probs=6.5

Q ss_pred             HHHHHHHhcCC
Q 008135          114 DLFVVLKSLSC  124 (576)
Q Consensus       114 ev~~~lk~l~y  124 (576)
                      -+-.+|+.++.
T Consensus       751 ~~~~lL~~l~l  761 (1184)
T 1i84_S          751 ACILMIKALEL  761 (1184)
T ss_dssp             HHHHHHHTTTC
T ss_pred             HHHHHHHHcCC
Confidence            45566776654

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=97.59  E-value=0.037  Score=54.33  Aligned_cols=149  Identities=13%  Similarity=0.095  Sum_probs=80.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH-----HHHHHHHHHHHHHhhh
Q 008135          409 SVEKLEELISLQQQSSEMAAKIEGKRKRIDALQFHINEMETQLNLLSKETQEITKRCAE-----EAKKMEEDIQTEAHNL  483 (576)
Q Consensus       409 ~~~~~~e~~~Lq~~l~~l~~~ieek~~~l~~Le~kl~~l~~ql~~lk~e~eee~~~~~~-----Ei~kl~eele~~~~~~  483 (576)
                      +..+..++..++..+..+...+......+..++..+..++..++.....+.........     +...+..+++.++...
T Consensus        27 ~~~lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v~~~kE~~aL~kEie~~~~~i  106 (256)
T 3na7_A           27 IREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEIKSERELRSLNIEEDIAKERS  106 (256)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHHHHH
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHH
Confidence            33444555555555666666666666666666666655555555555555444442221     3333444443332111


Q ss_pred             hHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 008135          484 DMVE----------REAVEVLKASESKFQEAIRQCEEEIQIRALDLFALVDSVSKYKERMESKISKMNKGISETALTVSE  553 (576)
Q Consensus       484 ~~~~----------~ea~~el~~~~~~~ee~~~e~eeek~~l~~el~~l~~~i~k~K~~i~~~i~~~~~~~~~~~~~i~~  553 (576)
                      ..++          ......+..++.++..+..++.+.+..+...+..+-..+.....+...-...+..+++..|+.|..
T Consensus       107 ~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~e~~~e~~~l~~~r~~l~~~i~~~lL~~Yerir~  186 (256)
T 3na7_A          107 NQANREIENLQNEIKRKSEKQEDLKKEMLELEKLALELESLVENEVKNIKETQQIIFKKKEDLVEKTEPKIYSFYERIRR  186 (256)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence            1111          223344455555555555555555555555555555555555555555555677889999999988


Q ss_pred             HHhc
Q 008135          554 AYKN  557 (576)
Q Consensus       554 ~f~~  557 (576)
                      ++.+
T Consensus       187 ~~~g  190 (256)
T 3na7_A          187 WAKN  190 (256)
T ss_dssp             HHGG
T ss_pred             hCCC
Confidence            7654

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=97.20  E-value=0.076  Score=52.07  Aligned_cols=92  Identities=11%  Similarity=0.075  Sum_probs=52.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHH
Q 008135          247 EEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRRELQAVERDIADA  326 (576)
Q Consensus       247 ~~D~~K~~~~i~~l~~~~~~~e~~l~~l~~Ele~~~~e~~~l~~e~~eL~~~l~~Q~~s~~di~r~~~Er~~L~~~l~~~  326 (576)
                      ...+..+..-+..+...+......+..++.++...+.++..+...+.+.+.++..-. +..++..+.+|++.+++.+..+
T Consensus        31 p~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v~-~~kE~~aL~kEie~~~~~i~~l  109 (256)
T 3na7_A           31 RKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEIK-SERELRSLNIEEDIAKERSNQA  109 (256)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCS-SSSHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444444444444455555555555555555666666677777765433 6677777777777777666666


Q ss_pred             HHHHHHHHHhhhH
Q 008135          327 ENARNEWESKTWD  339 (576)
Q Consensus       327 e~~~~~l~~~~~~  339 (576)
                      +..+.++...+..
T Consensus       110 E~eile~~e~ie~  122 (256)
T 3na7_A          110 NREIENLQNEIKR  122 (256)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            6555544444333

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=96.56  E-value=2.8  Score=54.40  Aligned_cols=96  Identities=17%  Similarity=0.171  Sum_probs=52.5

Q ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 008135          414 EELISLQQQSSEMAAKIEGKRKRIDALQFHINEMETQLNLLSKETQEITKRCAEEAKKMEEDIQTEAHNLDMVEREAVEV  493 (576)
Q Consensus       414 ~e~~~Lq~~l~~l~~~ieek~~~l~~Le~kl~~l~~ql~~lk~e~eee~~~~~~Ei~kl~eele~~~~~~~~~~~ea~~e  493 (576)
                      +++..++.++......+.+++..+..++.++..++.+|+....+.+    .+..+++..+..|+...    .+......|
T Consensus      2014 ~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~----~L~~e~~~~~~kl~rA~----~Li~gL~~E 2085 (3245)
T 3vkg_A         2014 EEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETE----QIKTESSKVKNKVDRSI----ALLDNLNSE 2085 (3245)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH----HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH----HHHHhhhhc
Confidence            3444556666666666777777777777777777777776655432    23333433333333322    111222345


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135          494 LKASESKFQEAIRQCEEEIQIRALDLFA  521 (576)
Q Consensus       494 l~~~~~~~ee~~~e~eeek~~l~~el~~  521 (576)
                      -.+|....+.+.    .+...|..+..=
T Consensus      2086 k~RW~~~~~~l~----~~~~~L~GD~LL 2109 (3245)
T 3vkg_A         2086 RGRWEQQSENFN----TQMSTVVGDVVL 2109 (3245)
T ss_dssp             HHHHHHHHHHHH----HHHHHHHHHHHH
T ss_pred             cccHHHHHHHHH----HHHHhccHHHHH
Confidence            556665555544    566666666543

>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}

Probab=96.19  E-value=0.53  Score=43.45  Aligned_cols=56  Identities=21%  Similarity=0.213  Sum_probs=35.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135          309 VERMRRELQAVERDIADAENARNEWESKTWDLDSKLGRKFKELEALSMECNQAMKR  364 (576)
Q Consensus       309 i~r~~~Er~~L~~~l~~~e~~~~~l~~~~~~~e~~l~~~~e~le~l~~~yn~~~~k  364 (576)
                      +..+..+...|......+...+..|++...+++.+.......++.+=..||.++-+
T Consensus        90 ~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~~~SleD~e~kln~aiEr  145 (189)
T 2v71_A           90 VSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIMSLEDFEQRLNQAIER  145 (189)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            44455555555555556666666666666677766666667777777777777654

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=95.76  E-value=3.7  Score=53.41  Aligned_cols=39  Identities=15%  Similarity=0.167  Sum_probs=21.0

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHH
Q 008135          288 ICEENEEFKKRVKLQTINARDVERMRRELQAVERDIADA  326 (576)
Q Consensus       288 l~~e~~eL~~~l~~Q~~s~~di~r~~~Er~~L~~~l~~~  326 (576)
                      +.....+|+.-|+.-.-+.++|+.|+.+...++..|++.
T Consensus      1915 l~~~~~rl~~GL~KL~et~~~V~~l~~~L~~~~~~L~~k 1953 (3245)
T 3vkg_A         1915 LEEEQLHLNIGLKKLRDTEAQVKDLQVSLAQKNRELDVK 1953 (3245)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444454444444445566666666666655555544

>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}

Probab=95.68  E-value=0.67  Score=41.81  Aligned_cols=111  Identities=18%  Similarity=0.194  Sum_probs=66.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 008135          241 KEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRRELQAVE  320 (576)
Q Consensus       241 ~~~~~L~~D~~K~~~~i~~l~~~~~~~e~~l~~l~~Ele~~~~e~~~l~~e~~eL~~~l~~Q~~s~~di~r~~~Er~~L~  320 (576)
                      +....+..-+..++..+..++.....+++.+..++..|+.......+-..-+.+|+.+|..-   ..|++++.....++.
T Consensus        41 k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L---~~El~~~k~~~~k~~  117 (168)
T 3o0z_A           41 KSISQLESLNRELQERNRILENSKSQTDKDYYQLQAILEAERRDRGHDSEMIGDLQARITSL---QEEVKHLKHNLEKVE  117 (168)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence            34444555555555666666666666666677776666666666666666666666655544   245666666666666


Q ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 008135          321 RDIADAENARNEWESKTWDLDSKLGRKFKELEAL  354 (576)
Q Consensus       321 ~~l~~~e~~~~~l~~~~~~~e~~l~~~~e~le~l  354 (576)
                      .+...+...+..+++....+++.+.-.++.+...
T Consensus       118 ~e~r~L~Ekl~~lEKe~a~~eid~~~eLKalQ~~  151 (168)
T 3o0z_A          118 GERKEAQDMLNHSEKEKNNLEIDLNYKLKSLQQR  151 (168)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            6666666666666666666665554444444433

>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}

Probab=95.56  E-value=1.3  Score=39.96  Aligned_cols=69  Identities=10%  Similarity=0.095  Sum_probs=47.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 008135          235 EREKLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQT  303 (576)
Q Consensus       235 ~l~~l~~~~~~L~~D~~K~~~~i~~l~~~~~~~e~~l~~l~~Ele~~~~e~~~l~~e~~eL~~~l~~Q~  303 (576)
                      ....|+++...|++-+.....-.......+.+++.++..+..|++........+..++..|...|....
T Consensus        63 ~k~~Leke~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lE  131 (168)
T 3o0z_A           63 SKSQTDKDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSE  131 (168)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444555555555555555555566666677788888888888888877777777777777766655543

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=95.55  E-value=0.53  Score=55.39  Aligned_cols=22  Identities=14%  Similarity=0.190  Sum_probs=10.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q 008135          435 KRIDALQFHINEMETQLNLLSK  456 (576)
Q Consensus       435 ~~l~~Le~kl~~l~~ql~~lk~  456 (576)
                      ..++.|+.....|+.+++.+..
T Consensus      1023 ~kv~~L~~e~~~L~qq~~~l~~ 1044 (1080)
T 2dfs_A         1023 QLVSELKEQNTLLKTEKEELNR 1044 (1080)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            4444444444444444444443

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=95.52  E-value=0.32  Score=57.27  Aligned_cols=85  Identities=13%  Similarity=0.219  Sum_probs=38.7

Q ss_pred             HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 008135          239 LEKEKCVLEEDLNKFNAI---IGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRRE  315 (576)
Q Consensus       239 l~~~~~~L~~D~~K~~~~---i~~l~~~~~~~e~~l~~l~~Ele~~~~e~~~l~~e~~eL~~~l~~Q~~s~~di~r~~~E  315 (576)
                      +..+...|+.|++.++..   ....+.++..++.++.++++++.....+.+.+++....++..+.      +.+..|..+
T Consensus       958 ~~~e~~~L~~~l~~le~~~~e~~~~~~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~~~L~------~kv~~L~~e 1031 (1080)
T 2dfs_A          958 YSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETE------QLVSELKEQ 1031 (1080)
T ss_dssp             HHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHH
Confidence            444555555554444443   22233344444444444444444444444444444444443222      334445555


Q ss_pred             HHHHHHHHHHHHHH
Q 008135          316 LQAVERDIADAENA  329 (576)
Q Consensus       316 r~~L~~~l~~~e~~  329 (576)
                      ...|++.+++++..
T Consensus      1032 ~~~L~qq~~~l~~~ 1045 (1080)
T 2dfs_A         1032 NTLLKTEKEELNRR 1045 (1080)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            55555555555433

>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}

Probab=94.06  E-value=1.3  Score=38.37  Aligned_cols=66  Identities=17%  Similarity=0.264  Sum_probs=29.7

Q ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhh
Q 008135          418 SLQQQSSEMAAKIEGKRKRIDALQFHINEMETQLNLLSKETQEITKRCAEEAKKMEEDIQTEAHNL  483 (576)
Q Consensus       418 ~Lq~~l~~l~~~ieek~~~l~~Le~kl~~l~~ql~~lk~e~eee~~~~~~Ei~kl~eele~~~~~~  483 (576)
                      ..+.++.+++..+...+.++.++......|+..+.......+.........+..++.++...+.+|
T Consensus        33 ~~k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~e~   98 (129)
T 3tnu_B           33 NTKHEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRGELALKDARNKLAELEEALQKAKQDM   98 (129)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence            333444444444444444444444444444444444444444343344444555555555544333

>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A

Probab=93.78  E-value=2.1  Score=35.46  Aligned_cols=60  Identities=12%  Similarity=0.113  Sum_probs=33.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135          236 REKLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEF  295 (576)
Q Consensus       236 l~~l~~~~~~L~~D~~K~~~~i~~l~~~~~~~e~~l~~l~~Ele~~~~e~~~l~~e~~eL  295 (576)
                      .+.+++++..|+.|......-.+.++......+......+.++......+..++.+.+.+
T Consensus         4 MdaIKkKm~~lk~e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~   63 (101)
T 3u1c_A            4 MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQV   63 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence            455666666666666666666666666555555555555555544444444444444444

>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}

Probab=93.53  E-value=1.4  Score=38.37  Aligned_cols=66  Identities=12%  Similarity=0.064  Sum_probs=27.5

Q ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhh
Q 008135          418 SLQQQSSEMAAKIEGKRKRIDALQFHINEMETQLNLLSKETQEITKRCAEEAKKMEEDIQTEAHNL  483 (576)
Q Consensus       418 ~Lq~~l~~l~~~ieek~~~l~~Le~kl~~l~~ql~~lk~e~eee~~~~~~Ei~kl~eele~~~~~~  483 (576)
                      ..+.++.+++..+...+.++..+......|+..+.................+..++.++...+.+|
T Consensus        35 ~~k~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~em  100 (131)
T 3tnu_A           35 SGKSEISELRRTMQNLEIELQSQLSMKASLENSLEETKGRYCMQLAQIQEMIGSVEEQLAQLRCEM  100 (131)
T ss_dssp             ------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444444444444444444444444444444444343344444555555555544333

>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A

Probab=93.34  E-value=2.9  Score=34.51  Aligned_cols=53  Identities=13%  Similarity=0.204  Sum_probs=19.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135          246 LEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKR  298 (576)
Q Consensus       246 L~~D~~K~~~~i~~l~~~~~~~e~~l~~l~~Ele~~~~e~~~l~~e~~eL~~~  298 (576)
                      +..++..++.-+..++......+..+......|+.........+.++..|.++
T Consensus        42 ~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~~~~aE~ev~~L~Rr   94 (101)
T 3u1c_A           42 LEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENAAKAESEVASLNRR   94 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333333333333333333333333333333333333344444433

>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A

Probab=93.31  E-value=3.7  Score=35.52  Aligned_cols=104  Identities=13%  Similarity=0.126  Sum_probs=44.7

Q ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 008135          418 SLQQQSSEMAAKIEGKRKRIDALQFHINEMETQLNLLSKETQEITKRCAEEAKKMEEDIQTEAHNLDMVEREAVEVLKAS  497 (576)
Q Consensus       418 ~Lq~~l~~l~~~ieek~~~l~~Le~kl~~l~~ql~~lk~e~eee~~~~~~Ei~kl~eele~~~~~~~~~~~ea~~el~~~  497 (576)
                      .+...+..+...+.........|+.+...+..+.+.+...++.+... .++++.....+...+..+.....++.+.+...
T Consensus        17 ~~~eel~~lke~l~k~e~~r~ele~~~~~l~~Ek~~L~~qL~~E~~~-l~e~EE~~~~L~~~k~eLe~~l~el~~rleee   95 (129)
T 2fxo_A           17 SMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDN-LADAEERCDQLIKNKIQLEAKVKEMNKRLEDE   95 (129)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444445554554444444455555555555555555555444322 22333333333333333332223333333333


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135          498 ESKFQEAIRQCEEEIQIRALDLFALVDSV  526 (576)
Q Consensus       498 ~~~~ee~~~e~eeek~~l~~el~~l~~~i  526 (576)
                      +.+...+.    .+++++..++..+-..|
T Consensus        96 ee~~~~L~----~~kkkle~e~~~Lk~~l  120 (129)
T 2fxo_A           96 EEMNAELT----AKKRKLEDECSELKRDI  120 (129)
T ss_dssp             HHHHHHHH----HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHH----HHHHHHHHHHHHHHHHH
Confidence            33322222    45555555555444433

>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}

Probab=93.26  E-value=5  Score=36.94  Aligned_cols=10  Identities=20%  Similarity=0.511  Sum_probs=4.1

Q ss_pred             HHHHHHHHHH
Q 008135          469 AKKMEEDIQT  478 (576)
Q Consensus       469 i~kl~eele~  478 (576)
                      +..|..++..
T Consensus        90 ~~~Lq~el~~   99 (189)
T 2v71_A           90 VSVLEDDLSQ   99 (189)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            4444444433

>3okq_A BUD site selection protein 6; coiled-coil, protein binding; 2.04A {Saccharomyces cerevisiae} PDB: 3onx_A

Probab=93.05  E-value=3.5  Score=35.84  Aligned_cols=72  Identities=15%  Similarity=0.190  Sum_probs=56.3

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHh------ccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Q 008135          203 EKLEKEKENVSEYVEELKKKVSEMEG------AMTGPTEREKLEKEKCVLEEDLNKFNAIIGELNM-RKEKMEKLVEEK  274 (576)
Q Consensus       203 ~kl~~~~~~~~~~~~~L~~~~~~le~------l~~~~~~l~~l~~~~~~L~~D~~K~~~~i~~l~~-~~~~~e~~l~~l  274 (576)
                      .+|....+.+...+..|+..++.|..      .+-.|..++.+.+++..+..++.+++.||....- =.+.|+.+|...
T Consensus        17 ~kL~~~sd~LvtkVDDLQD~VE~LRkDV~~RgvrP~~~ql~~v~kdi~~a~~eL~~m~~~i~~ekP~WKKiWE~EL~~V   95 (141)
T 3okq_A           17 TELGDLSDTLLSKVDDLQDVIEIMRKDVAERRSQPAKKKLETVSKDLENAQADVLKLQEFIDTEKPHWKKTWEAELDKV   95 (141)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHH
Confidence            46777777888888888888888776      4556668889999999999999999999988773 355677665554

>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}

Probab=92.49  E-value=4.5  Score=34.43  Aligned_cols=109  Identities=13%  Similarity=0.175  Sum_probs=57.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135          254 NAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRRELQAVERDIADAENARNEW  333 (576)
Q Consensus       254 ~~~i~~l~~~~~~~e~~l~~l~~Ele~~~~e~~~l~~e~~eL~~~l~~Q~~s~~di~r~~~Er~~L~~~l~~~e~~~~~l  333 (576)
                      +.-+++++.+-.-.++.|..+..|+......++.....+.+-..+-.+|.+.+.-..++......-..-++.+...+..|
T Consensus        45 qgKVDQlqKRn~~HQKEi~~Lrae~~~~QRn~~K~~~~Lkrn~~qQnQQSlDiRKLrELEADLKEKDsMVe~LT~TiG~L  124 (167)
T 4gkw_A           45 QGKVDQLQKRNVAHQKEIGKLRAELGTAQRNLEKADQLLKRNSQQQNQQSLDMRKLGELEADLKEKDSMVESLTETIGIL  124 (167)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHTHHHHHHHHHHHHHHHHHH
T ss_pred             HhhHHHHHHhccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhHHHhHhhhhHHHHHHHHhHHhhhhHHHHHHHHHHHHH
Confidence            34455555555555555666655555555545444444433333333343332222222222222222345566667777


Q ss_pred             HHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135          334 ESKTWDLDSKLGRKFKELEALSMECNQAM  362 (576)
Q Consensus       334 ~~~~~~~e~~l~~~~e~le~l~~~yn~~~  362 (576)
                      ++...+.-.......++++++-.+--.+.
T Consensus       125 rKELEdEklK~~E~MdSFE~LkvENE~vk  153 (167)
T 4gkw_A          125 RKELENEKLKAAENMDSFEKLSMENENLK  153 (167)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhHhHH
Confidence            77777777777888888888765533333

>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}

Probab=92.45  E-value=4  Score=33.68  Aligned_cols=8  Identities=25%  Similarity=0.347  Sum_probs=2.8

Q ss_pred             HHHHHHHH
Q 008135          245 VLEEDLNK  252 (576)
Q Consensus       245 ~L~~D~~K  252 (576)
                      .|+.+...
T Consensus        13 ~lk~e~e~   20 (101)
T 3u59_A           13 MLKLDKEN   20 (101)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            33333333

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=91.39  E-value=0.81  Score=50.09  Aligned_cols=16  Identities=0%  Similarity=-0.039  Sum_probs=6.4

Q ss_pred             HhHHHHHHHHHHHHHH
Q 008135          540 MNKGISETALTVSEAY  555 (576)
Q Consensus       540 ~~~~~~~~~~~i~~~f  555 (576)
                      ++.++.+-...++++|
T Consensus       570 ~~~~~~~l~~~~~~~~  585 (597)
T 3oja_B          570 KRQKVKQLEAKKNRNP  585 (597)
T ss_dssp             HHHHHHHHHHTTC---
T ss_pred             HHHHHHHHHHHhcCCC
Confidence            3444555555555554

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=90.15  E-value=8.9  Score=40.60  Aligned_cols=51  Identities=10%  Similarity=0.072  Sum_probs=23.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135          312 MRRELQAVERDIADAENARNEWESKTWDLDSKLGRKFKELEALSMECNQAM  362 (576)
Q Consensus       312 ~~~Er~~L~~~l~~~e~~~~~l~~~~~~~e~~l~~~~e~le~l~~~yn~~~  362 (576)
                      ++++.+..+..++.+....+.++....+....+......+..++..--.++
T Consensus       433 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  483 (487)
T 3oja_A          433 AIRDWDMYQHKETQLAEENARLKKLNGEADLALASANATLQELVVREQNLA  483 (487)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcccHHHHHHHHHHHHH
Confidence            334444444444444444444455555555555555555544444433333

>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*

Probab=90.10  E-value=7.8  Score=40.90  Aligned_cols=31  Identities=13%  Similarity=0.163  Sum_probs=15.7

Q ss_pred             HHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHH
Q 008135          510 EEIQIRALDLFALVDSV-------------SKYKERMESKISKM  540 (576)
Q Consensus       510 eek~~l~~el~~l~~~i-------------~k~K~~i~~~i~~~  540 (576)
                      -+.++|...|...++.-             .+.=+.+|+.|+++
T Consensus       145 ~kIQRLEvDIdiqirsCKgsCsr~~~~~vd~~sY~~~QKQLeQv  188 (562)
T 3ghg_A          145 VDMKRLEVDIDIKIRSCRGSCSRALAREVDLKDYEDQQKQLEQV  188 (562)
T ss_dssp             HHHHHHHHHHHHHHHHGGGTBSCCCCCCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhccccccchheeecchHHHHHHHHHHHHH
Confidence            45555555555555332             33345566666653

>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}

Probab=89.72  E-value=8.1  Score=32.34  Aligned_cols=54  Identities=19%  Similarity=0.169  Sum_probs=29.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135          310 ERMRRELQAVERDIADAENARNEWESKTWDLDSKLGRKFKELEALSMECNQAMK  363 (576)
Q Consensus       310 ~r~~~Er~~L~~~l~~~e~~~~~l~~~~~~~e~~l~~~~e~le~l~~~yn~~~~  363 (576)
                      ..+..+...|...-+.+...+..|++...+++.+-.....+++.+=..||..+-
T Consensus        38 ~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SLeD~E~k~n~aiE   91 (111)
T 2v66_B           38 SVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVSLEDFEQRLNQAIE   91 (111)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            334444444444444444555555555555565555555666666666666553

>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}

Probab=89.35  E-value=6.7  Score=30.84  Aligned_cols=28  Identities=21%  Similarity=0.379  Sum_probs=19.2

Q ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 008135          200 GFIEKLEKEKENVSEYVEELKKKVSEME  227 (576)
Q Consensus       200 ~~~~kl~~~~~~~~~~~~~L~~~~~~le  227 (576)
                      +..++|...+....+.+.-|+-++.+|.
T Consensus         6 ElleqLE~KIq~avdtI~lLqmEieELK   33 (81)
T 2jee_A            6 EVFEKLEAKVQQAIDTITLLQMEIEELK   33 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4556777777777777777766666554

>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A

Probab=89.27  E-value=9.9  Score=32.72  Aligned_cols=37  Identities=19%  Similarity=0.121  Sum_probs=14.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135          243 KCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIG  279 (576)
Q Consensus       243 ~~~L~~D~~K~~~~i~~l~~~~~~~e~~l~~l~~Ele  279 (576)
                      +..|...+.+.......++.....+......+...|.
T Consensus        22 l~~lke~l~k~e~~r~ele~~~~~l~~Ek~~L~~qL~   58 (129)
T 2fxo_A           22 FTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQ   58 (129)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333344344334333333333333

>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1

Probab=89.19  E-value=4.3  Score=32.03  Aligned_cols=37  Identities=16%  Similarity=0.119  Sum_probs=15.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135          239 LEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKE  275 (576)
Q Consensus       239 l~~~~~~L~~D~~K~~~~i~~l~~~~~~~e~~l~~l~  275 (576)
                      +++++..|+.|......-...++......+......+
T Consensus         4 ikkKm~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E   40 (81)
T 1ic2_A            4 IKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLE   40 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence            3444444444444444444444444444333333333

>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*

Probab=88.64  E-value=6.8  Score=41.30  Aligned_cols=12  Identities=25%  Similarity=0.390  Sum_probs=5.5

Q ss_pred             HHHHHHHHHHHH
Q 008135          313 RRELQAVERDIA  324 (576)
Q Consensus       313 ~~Er~~L~~~l~  324 (576)
                      ..++++|+.+|+
T Consensus       144 ~~kIQRLEvDId  155 (562)
T 3ghg_A          144 LVDMKRLEVDID  155 (562)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            344444444444

>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}

Probab=88.62  E-value=3.6  Score=33.05  Aligned_cols=60  Identities=13%  Similarity=0.201  Sum_probs=44.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135          275 EREIGKKVEEHKRICEENEEFKKRVKLQTI---NARDVERMRRELQAVERDIADAENARNEWE  334 (576)
Q Consensus       275 ~~Ele~~~~e~~~l~~e~~eL~~~l~~Q~~---s~~di~r~~~Er~~L~~~l~~~e~~~~~l~  334 (576)
                      +.+++.....|..++.++.+|...+.+-.+   +.+.+..+..++..+...|+.+......|+
T Consensus        21 qrEle~le~~Ie~LE~~i~~le~~ladp~~y~~d~~~~~~l~~~l~~~e~eLe~~~erWeeLe   83 (89)
T 2lw1_A           21 QRELEQLPQLLEDLEAKLEALQTQVADASFFSQPHEQTQKVLADMAAAEQELEQAFERWEYLE   83 (89)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345666777778888888999999988664   567777777888888888877766655443

>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}

Probab=88.45  E-value=9.5  Score=32.82  Aligned_cols=64  Identities=20%  Similarity=0.290  Sum_probs=38.2

Q ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 008135          415 ELISLQQQSSEMAAKIEGKRKRIDALQFHINEMETQLNLLSKETQEITKRCAEEAKKMEEDIQT  478 (576)
Q Consensus       415 e~~~Lq~~l~~l~~~ieek~~~l~~Le~kl~~l~~ql~~lk~e~eee~~~~~~Ei~kl~eele~  478 (576)
                      ++..+...+..+...++..++....|+..+.+++..++.....++.......+++..++.+|+.
T Consensus        37 Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~e~~~  100 (129)
T 3tnu_B           37 EISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRGELALKDARNKLAELEEALQKAKQDMAR  100 (129)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence            3444455555555555555666666666666666666666666666665666666666666655

>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}

Probab=87.33  E-value=8.9  Score=33.11  Aligned_cols=64  Identities=11%  Similarity=0.230  Sum_probs=36.2

Q ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 008135          415 ELISLQQQSSEMAAKIEGKRKRIDALQFHINEMETQLNLLSKETQEITKRCAEEAKKMEEDIQT  478 (576)
Q Consensus       415 e~~~Lq~~l~~l~~~ieek~~~l~~Le~kl~~l~~ql~~lk~e~eee~~~~~~Ei~kl~eele~  478 (576)
                      ++..+...+..+...++..++....|+..+.+++..+......++.......+++..++.+|+.
T Consensus        39 Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~em~~  102 (131)
T 3tnu_A           39 EISELRRTMQNLEIELQSQLSMKASLENSLEETKGRYCMQLAQIQEMIGSVEEQLAQLRCEMEQ  102 (131)
T ss_dssp             --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444555555555555555566666666666666665555555555566666666666555

>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}

Probab=87.14  E-value=23  Score=34.53  Aligned_cols=33  Identities=12%  Similarity=0.154  Sum_probs=6.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 008135          513 QIRALDLFALVDSVSKYKERMESKISKMNKGIS  545 (576)
Q Consensus       513 ~~l~~el~~l~~~i~k~K~~i~~~i~~~~~~~~  545 (576)
                      +.+...+.++-..+.-|-..++..++-+.+||-
T Consensus       234 ~~l~~~~e~l~~~l~~~~~~~~~~~~~~~~d~~  266 (273)
T 3s84_A          234 KALVQQMEQLRQKLGPHAGDVEGHLSFLEKDLR  266 (273)
T ss_dssp             HHHHHHHHHHHHHHSCC----------------
T ss_pred             HHHHHHHHHHHHHhCcchhhHHhhhhHHHHHHH
Confidence            333344444444444444444444444444443

>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}

Probab=87.13  E-value=5.1  Score=35.07  Aligned_cols=42  Identities=14%  Similarity=0.139  Sum_probs=16.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135          249 DLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICE  290 (576)
Q Consensus       249 D~~K~~~~i~~l~~~~~~~e~~l~~l~~Ele~~~~e~~~l~~  290 (576)
                      |+-+.+.-.+.++..+..+.+.+..++.++.....+++.+..
T Consensus        69 El~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~  110 (138)
T 3hnw_A           69 DYFKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAK  110 (138)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333444444444444444444444444444333333333333

>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A

Probab=87.12  E-value=16  Score=32.52  Aligned_cols=9  Identities=33%  Similarity=0.564  Sum_probs=3.4

Q ss_pred             HHhhhHHHH
Q 008135          334 ESKTWDLDS  342 (576)
Q Consensus       334 ~~~~~~~e~  342 (576)
                      ....|.++.
T Consensus       139 ~~~~~~~~~  147 (155)
T 2efr_A          139 LSKNYHLEN  147 (155)
T ss_dssp             HHHHHHHHH
T ss_pred             ccchHHHHH
Confidence            333343333

>3nr7_A DNA-binding protein H-NS; dimer, oligomerisation, DNA condensation; 3.70A {Salmonella enterica subsp} PDB: 1lr1_A 1ni8_A

Probab=86.93  E-value=3.8  Score=32.77  Aligned_cols=47  Identities=17%  Similarity=0.283  Sum_probs=32.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHH
Q 008135          264 KEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVE  310 (576)
Q Consensus       264 ~~~~e~~l~~l~~Ele~~~~e~~~l~~e~~eL~~~l~~Q~~s~~di~  310 (576)
                      ..++...+.+.+++-+....+.+.-++.++++...+...|+|++|+-
T Consensus        33 leKl~~VveERree~~~~~~~~~er~~Kl~~~~e~l~~~GI~~eeL~   79 (86)
T 3nr7_A           33 LEKLEVVVNERREEESAAAAEVEERTRKLQQYREMLIADGIDPNELL   79 (86)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHH
Confidence            33344444444455555555666667888999999999999999974

>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}

Probab=86.18  E-value=26  Score=36.71  Aligned_cols=13  Identities=15%  Similarity=0.279  Sum_probs=5.8

Q ss_pred             HHHHHHHHHHcCC
Q 008135          178 YASDSYLNYIEGK  190 (576)
Q Consensus       178 y~~~~Y~~fl~g~  190 (576)
                      .+...+..++.|.
T Consensus       356 ~~~~~~~~vl~G~  368 (471)
T 3mq9_A          356 AVRTAVINAASGR  368 (471)
T ss_dssp             HHHHHHHHHHHSS
T ss_pred             HHHHHHHHHHcCC
Confidence            3344444444554

>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A

Probab=86.09  E-value=3.8  Score=34.21  Aligned_cols=44  Identities=16%  Similarity=0.247  Sum_probs=29.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 008135          261 NMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTI  304 (576)
Q Consensus       261 ~~~~~~~e~~l~~l~~Ele~~~~e~~~l~~e~~eL~~~l~~Q~~  304 (576)
                      +.++++++.+|..+...|.....+++.+..++..|..+|..++.
T Consensus        70 q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~~r~~~~~~  113 (121)
T 3mq7_A           70 QKKVEELEGEITTLNHKLQDASAEVERLRRENQVLSVRIADKKY  113 (121)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhHhhhccc
Confidence            44566666667777777777777777888888888888877774

>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}

Probab=85.60  E-value=9.8  Score=33.55  Aligned_cols=28  Identities=11%  Similarity=0.009  Sum_probs=11.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135          272 EEKEREIGKKVEEHKRICEENEEFKKRV  299 (576)
Q Consensus       272 ~~l~~Ele~~~~e~~~l~~e~~eL~~~l  299 (576)
                      ..++-++...+..+..++.|+..|-.+.
T Consensus       106 ~aLqlq~n~lE~kl~kLq~EN~~LV~RW  133 (152)
T 3a7p_A          106 ISGTIENNVLQQKLSDLKKEHSQLVARW  133 (152)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333344444445555544443

>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}

Probab=85.41  E-value=12  Score=32.76  Aligned_cols=59  Identities=15%  Similarity=0.100  Sum_probs=27.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135          240 EKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKR  298 (576)
Q Consensus       240 ~~~~~~L~~D~~K~~~~i~~l~~~~~~~e~~l~~l~~Ele~~~~e~~~l~~e~~eL~~~  298 (576)
                      +.+...|..+++....-+..+.......+-++..+.++++....++..++.++.+|+..
T Consensus        74 ~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~  132 (138)
T 3hnw_A           74 KKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLETE  132 (138)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444444444444444444444444444444444444444444444444444443

>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}

Probab=84.67  E-value=16  Score=30.30  Aligned_cols=16  Identities=6%  Similarity=0.246  Sum_probs=6.4

Q ss_pred             HHHHHHHHHHHHHHHH
Q 008135          309 VERMRRELQAVERDIA  324 (576)
Q Consensus       309 i~r~~~Er~~L~~~l~  324 (576)
                      -++++.+++.|..++.
T Consensus        85 REkl~~eKe~L~~ql~  100 (110)
T 2v4h_A           85 REKLVEKKEYLQEQLE  100 (110)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHhHHHHHHHHHH
Confidence            3334444444443333

>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A

Probab=84.02  E-value=6.7  Score=33.40  Aligned_cols=39  Identities=10%  Similarity=0.180  Sum_probs=19.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135          262 MRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVK  300 (576)
Q Consensus       262 ~~~~~~e~~l~~l~~Ele~~~~e~~~l~~e~~eL~~~l~  300 (576)
                      ..+..+...+..|+.+|............+++.|...++
T Consensus        40 ~~v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~   78 (120)
T 3i00_A           40 RVVLQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELD   78 (120)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344445555555555655554444444455555544433

>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}

Probab=83.54  E-value=14  Score=28.94  Aligned_cols=51  Identities=18%  Similarity=0.258  Sum_probs=20.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 008135          405 VKRSSVEKLEELISLQQQSSEMAAKIEGKRKRIDALQFHINEMETQLNLLS  455 (576)
Q Consensus       405 i~~~~~~~~~e~~~Lq~~l~~l~~~ieek~~~l~~Le~kl~~l~~ql~~lk  455 (576)
                      +..++....+.+.-|+.+++++.........++..+......+..+.+.++
T Consensus        11 LE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk   61 (81)
T 2jee_A           11 LEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLK   61 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence            333344444444444444444443333333333333333333333333333

>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*

Probab=83.35  E-value=27  Score=36.77  Aligned_cols=25  Identities=24%  Similarity=0.450  Sum_probs=13.0

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHH
Q 008135          203 EKLEKEKENVSEYVEELKKKVSEME  227 (576)
Q Consensus       203 ~kl~~~~~~~~~~~~~L~~~~~~le  227 (576)
                      +-|.+.-..+...++.|+..+.+|+
T Consensus        89 D~L~k~q~~V~~~LqeLe~~l~~ls  113 (464)
T 1m1j_B           89 TTLLKQEKTVKPVLRDLKDRVAKFS  113 (464)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhhhhhHhHHHHHHHHHHHHh
Confidence            3444444445555565655555554

>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A

Probab=81.71  E-value=19  Score=29.06  Aligned_cols=57  Identities=16%  Similarity=0.177  Sum_probs=28.9

Q ss_pred             HHHHHHhHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135          205 LEKEKENVSEYVEELKKKVSEMEGAMTGPTEREKLEKEKCVLEEDLNKFNAIIGELNMRKEKMEK  269 (576)
Q Consensus       205 l~~~~~~~~~~~~~L~~~~~~le~l~~~~~~l~~l~~~~~~L~~D~~K~~~~i~~l~~~~~~~e~  269 (576)
                      |...+++..+.+..|++....|+.      .+..+..+..  ..+-..|..+|..+...+..+..
T Consensus        14 LNdRlAsyIdKVR~LEqqN~~Le~------~i~~l~~~~~--~~~~~~ye~~i~~Lr~~i~~~~~   70 (93)
T 3s4r_A           14 LNDRFANLIDKVRFLEQQNKILLA------ELEQLKGQGK--SRLGDLYEEEMRELRRQVDQLTN   70 (93)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH------HHHHHhhccC--CCcHHHHHHHHHHHHHHHHHHHH
Confidence            555566666677777777766663      3333332211  12333455555555444444333

>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A

Probab=81.27  E-value=29  Score=30.82  Aligned_cols=46  Identities=17%  Similarity=0.152  Sum_probs=30.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008135          492 EVLKASESKFQEAIRQCEEEIQIRALDLFALVDSVSKYKERMESKISKMN  541 (576)
Q Consensus       492 ~el~~~~~~~ee~~~e~eeek~~l~~el~~l~~~i~k~K~~i~~~i~~~~  541 (576)
                      ..++.++.|++.+.    ....+|...+.++.+.+...|.+....-+.|+
T Consensus        84 ~kLKEAE~RAE~AE----Rsv~kLEk~id~lEd~L~~~Kek~~~i~~eLd  129 (155)
T 2efr_A           84 DKLKEAETRAEFAE----RSVTKLEKSIDDLEDELYAQKLKYKAISEEMK  129 (155)
T ss_dssp             HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56666677777766    56677888888888877666665544444333

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=81.14  E-value=20  Score=37.78  Aligned_cols=33  Identities=9%  Similarity=0.019  Sum_probs=16.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008135          306 ARDVERMRRELQAVERDIADAENARNEWESKTW  338 (576)
Q Consensus       306 ~~di~r~~~Er~~L~~~l~~~e~~~~~l~~~~~  338 (576)
                      .++++.+..+.+.++..+.++..++....++..
T Consensus       441 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  473 (487)
T 3oja_A          441 QHKETQLAEENARLKKLNGEADLALASANATLQ  473 (487)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHhhhhhhhhhhhhhhhHhcccHHH
Confidence            344555555555555555555554444444433

>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}

Probab=80.15  E-value=24  Score=29.22  Aligned_cols=19  Identities=11%  Similarity=0.312  Sum_probs=7.3

Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q 008135          277 EIGKKVEEHKRICEENEEF  295 (576)
Q Consensus       277 Ele~~~~e~~~l~~e~~eL  295 (576)
                      +..+.....+.+..++++|
T Consensus        77 DF~aERadREkl~~eKe~L   95 (110)
T 2v4h_A           77 DFQAERHAREKLVEKKEYL   95 (110)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             HHccchhhHHHHHhHHHHH
Confidence            3333333333344444433

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	576
d1seta1	110	Seryl-tRNA synthetase (SerRS) {Thermus thermophilu	82.89
d1fxkc_	133	Prefoldin alpha subunit {Archaeon Methanobacterium	81.72
d2efla1	288	Formin-binding protein 1, FNBP1 {Human (Homo sapie	81.34
d1lrza1	65	Methicillin resistance protein FemA probable tRNA-	80.64

>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: tRNA-binding arm
family: Seryl-tRNA synthetase (SerRS)
domain: Seryl-tRNA synthetase (SerRS)
species: Thermus thermophilus, strain hb27 [TaxId: 274]

Probab=82.89  E-value=6.3  Score=30.79  Aligned_cols=59  Identities=20%  Similarity=0.236  Sum_probs=33.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008135          276 REIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRRELQAVERDIADAENARNEWESK  336 (576)
Q Consensus       276 ~Ele~~~~e~~~l~~e~~eL~~~l~~Q~~s~~di~r~~~Er~~L~~~l~~~e~~~~~l~~~  336 (576)
                      .+......+++.++.+...+.+.|..  ...++.+.+..+...|...+..++.....++..
T Consensus        35 ~~rr~l~~~~e~l~~~rN~~sk~i~k--~~~~~~~~l~~~~k~lk~~i~~le~~~~~~~~~   93 (110)
T d1seta1          35 REVQELKKRLQEVQTERNQVAKRVPK--APPEEKEALIARGKALGEEAKRLEEALREKEAR   93 (110)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHGGG--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH--hhccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333444555666666677777653  345666666666666666666555555444443

>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Prefoldin
family: Prefoldin
domain: Prefoldin alpha subunit
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=81.72  E-value=7.5  Score=31.28  Aligned_cols=31  Identities=3%  Similarity=0.072  Sum_probs=17.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 008135          309 VERMRRELQAVERDIADAENARNEWESKTWD  339 (576)
Q Consensus       309 i~r~~~Er~~L~~~l~~~e~~~~~l~~~~~~  339 (576)
                      ++++....+.++..++.+...+..++....+
T Consensus         3 L~eL~~~~~~l~~~l~~l~~~i~~l~~~~~e   33 (133)
T d1fxkc_           3 LAEIVAQLNIYQSQVELIQQQMEAVRATISE   33 (133)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455555566666666555555555544444

>d2efla1 a.238.1.4 (A:1-288) Formin-binding protein 1, FNBP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: BAR/IMD domain-like
superfamily: BAR/IMD domain-like
family: FCH domain
domain: Formin-binding protein 1, FNBP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.34  E-value=18  Score=32.27  Aligned_cols=29  Identities=10%  Similarity=0.074  Sum_probs=13.0

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Q 008135          295 FKKRVKLQTINARDVERMRRELQAVERDI  323 (576)
Q Consensus       295 L~~~l~~Q~~s~~di~r~~~Er~~L~~~l  323 (576)
                      |..++...--..+++...-++|..++...
T Consensus        14 l~~~~~~~~~~~~~~~~~~~eRa~iE~eY   42 (288)
T d2efla1          14 LEKHTQWGIDILEKYIKFVKERTEIELSY   42 (288)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333445555555555554443

>d1lrza1 a.2.7.4 (A:245-309) Methicillin resistance protein FemA probable tRNA-binding arm {Staphylococcus aureus [TaxId: 1280]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: tRNA-binding arm
family: Methicillin resistance protein FemA probable tRNA-binding arm
domain: Methicillin resistance protein FemA probable tRNA-binding arm
species: Staphylococcus aureus [TaxId: 1280]

Probab=80.64  E-value=4.9  Score=28.49  Aligned_cols=27  Identities=26%  Similarity=0.454  Sum_probs=20.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008135          253 FNAIIGELNMRKEKMEKLVEEKEREIG  279 (576)
Q Consensus       253 ~~~~i~~l~~~~~~~e~~l~~l~~Ele  279 (576)
                      |..|+..++.....+...|..+...|+
T Consensus         1 F~eYl~~L~~~~~~L~~~i~k~~~~le   27 (65)
T d1lrza1           1 FDEYIKELNEERDILNKDLNKALKDIE   27 (65)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            677888888888777777777777665