Citrus Sinensis ID: 008137

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570------
Protein Sequence
MVEGGVSKASKTEFTECWNIVWTTPYIMKLALSAGIGGLLFGYDTGVISGALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFIGAIIMAIAPQPWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFTKAPGTWRWMLGVAGLPAVVQFGLMMMLPESPRWLYRQNKVDEARAILEKIYPADQVEEEVNLLKQSVENEKAEEGLIGKDMISRLKGAFGNKIVRRGLYAGVTVQVAQQFVGINTVMYYSPTIVQFAGFASKSTALALSLVTSGLNALGSIVSMAFVDKYGRRRLMIVSMFGLSSCLVALAVVFFQAAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAHKGNEYLPGACLIDEKSTDTLCSDEHRTYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEIYPLRYRGVGGGIAAVSNWTSNLIVSLTFLTLTEALGSAGTFLLFAGFSLLGLVAIYLLVPETKGLAFEEVEKMLETGFKPSAFMKKSNKSEMHA
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccHHHHHHHHHHHHHHcccccHHHHHHcHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccEEHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHcccHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHccccccHHHHHHHHHHHHHHccccccccHHcHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccccHHHHHHHHHHHHHHHHHcccccccHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHccccccHHHHHccHHHccc
Secondary Structure Prediction (SSPRO)
ccccccccccHHHcccccccccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHccccHEEEEHHHEHHHHHHHHHccccEEHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHcccccHHHHHcccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcccHEHEEHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccEEEEccccEEcccccccccccccccccccccHcccccccccccccccHHHHHHHHHHHHHHHHHccccccccEEEEcHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHcHccccccHHHHHHHHHccccHHHHccccccccccc
Coil and Loop (DISEMBL)
mveggvskaskteftecwnivwttPYIMKLALSAGIGGLLFGYDTGVISGALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFgagfggwindRFGRKISLLGADVLFFIGAIIMAIAPQPWVIILGRIFVGLGVGmasmtaplyiseaspaKIRGALVSANGFLITGGQFLAYLINLAFTKAPGTWRWMlgvaglpaVVQFGLMmmlpesprwlyrQNKVDEARAILEkiypadqvEEEVNLLKQSVEnekaeeglIGKDMISRLKGAFGNKIVRRGLYAGVTVQVAQQFVGINtvmyysptivqfagfaSKSTALALSLVTSGLNALGSIVSMAFVDKYGRRRLMIVSMFGLSSCLVALAVVFFQAaihaptvsqiesshfggnntcpayitdgnakswncmdclkakcgfcahkgneylpgaclidekstdtlcsdehrtyfisgcpssfgWLAVVFLGAYIItyspgmgtapwivnseiyplryrgvgggIAAVSNWTSNLIVSLTFLTLTEALGSAGTFLLFAGFSLLGLVAIYLLVPETKGLAFEEVEKMLEtgfkpsafmkksnksemha
Flexible Loop (DISEMBL)
mveggvskaskteftecwNIVWTTPYIMKLALSAGIGGLLFGYDTGVISGALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFIGAIIMAIAPQPWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFTKAPGTWRWMLGVAGLPAVVQFGLMMMLPESPRWLYRQNKVDEARAILEKIYPADQVEEEVNLLKQSvenekaeegligkdmiSRLKGAFGNKIVRRGLYAGVTVQVAQQFVGINTVMYYSPTIVQFAGFASKSTALALSLVTSGLNALGSIVSMAFVDKYGRRRLMIVSMFGLSSCLVALAVVFFQAAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAHKGNEYLPGACLIDEKSTDTLCSDEHRTYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEIYPLRYRGVGGGIAAVSNWTSNLIVSLTFLTLTEALGSAGTFLLFAGFSLLGLVAIYLLVPETKGLAFEEVEKMLEtgfkpsafmkksnksemha
Low Complexity Region (SEG)
MVEGGVSKASKTEFTECWNIVWTTPYIMKLALSAGIGGLLFGYDTGVISGALLYIKEDFRDVEKKTWLQELIVSMavagaifgagfggWINDRFGRKISLLGADVLFFIGAIIMAIAPQPWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFTKAPGTWRWMLGVAGLPAVVQFGLMMMLPESPRWLYRQNKVDEARAILEKIYPADQVEEEVNLLKQSVENEKAEEGLIGKDMISRLKGAFGNKIVRRGLYAGVTVQVAQQFVGINTVMYYSPTIVQFAGFASKSTALALSLVTSGLNALGSIVSMAFVDKYGRRRLMIVSMFGLSSClvalavvffqaaIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAHKGNEYLPGACLIDEKSTDTLCSDEHRTYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEIYPLRYRGVGGGIAAVSNWTSNLIVSLTFLTLTEALGSagtfllfagfsllglvaIYLLVPETKGLAFEEVEKMLETGFKPSAFMKKSNKSEMHA
Disordered region (IsUnstruct)
************EFTECWNIVWTTPYIMKLALSAGIGGLLFGYDTGVISGALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFIGAIIMAIAPQPWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFTKAPGTWRWMLGVAGLPAVVQFGLMMMLPESPRWLYRQNKVDEARAILEKIYPADQVEEEVNLL***********GLIGKDMISRLKGAFGNKIVRRGLYAGVTVQVAQQFVGINTVMYYSPTIVQFAGFASKSTALALSLVTSGLNALGSIVSMAFVDKYGRRRLMIVSMFGLSSCLVALAVVFFQAAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAHKGNEYLPGACLIDEKSTDTLCSDEHRTYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEIYPLRYRGVGGGIAAVSNWTSNLIVSLTFLTLTEALGSAGTFLLFAGFSLLGLVAIYLLVPETKGLAFEEVEKML********************
Disordered Region (DISOPRED)
*************************YIMKLALSAGIGGLLFGYDTGVISGALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFIGAIIMAIAPQPWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFTKAPGTWRWMLGVAGLPAVVQFGLMMMLPESPRWLYRQNKVDEARAILEKIYPADQVEEEVN*********************SRLKGAFGNKIVRRGLYAGVTVQVAQQFVGINTVMYYSPTIVQFAGFASKSTALALSLVTSGLNALGSIVSMAFVDKYGRRRLMIVSMFGLSSCLVALAVVFFQAAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAHKGNEYLPGACLIDEKSTDTLCSDEHRTYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEIYPLRYRGVGGGIAAVSNWTSNLIVSLTFLTLTEALGSAGTFLLFAGFSLLGLVAIYLLVPETKGLAFEEVEKML********************
Disordered Region (DISEMBL)
**********KTEFTECWNIVWTTPYIMKLALSAGIGGLLFGYDTGVISGALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFIGAIIMAIAPQPWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFTKAPGTWRWMLGVAGLPAVVQFGLMMMLPESPRWLYRQNKVDEARAILEKIYPADQVEEEVNLLKQSVENEKAEEGLIGKDMISRLKGAFGNKIVRRGLYAGVTVQVAQQFVGINTVMYYSPTIVQFAGFASKSTALALSLVTSGLNALGSIVSMAFVDKYGRRRLMIVSMFGLSSCLVALAVVFFQAAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAHKGNEYLPGACLIDEKSTDTLCSDEHRTYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEIYPLRYRGVGGGIAAVSNWTSNLIVSLTFLTLTEALGSAGTFLLFAGFSLLGLVAIYLLVPETKGLAFEEVEKMLETGFKPSAFMK*********
Disordered Region (DISPRO)
*******************IVWTTPYIMKLALSAGIGGLLFGYDTGVISGALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFIGAIIMAIAPQPWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFTKAPGTWRWMLGVAGLPAVVQFGLMMMLPESPRWLYRQNKVDEARAILEKIYPADQVEEEVNLLKQSVENEKAEEGLIGKDMISRLKGAFGNKIVRRGLYAGVTVQVAQQFVGINTVMYYSPTIVQFAGFASKSTALALSLVTSGLNALGSIVSMAFVDKYGRRRLMIVSMFGLSSCLVALAVVFFQAAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAHKGNEYLPGACLIDEKSTDTLCSDEHRTYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEIYPLRYRGVGGGIAAVSNWTSNLIVSLTFLTLTEALGSAGTFLLFAGFSLLGLVAIYLLVPETKGLAFEEVEKMLETGFKPSAFM**********
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVEGGVSKASKTEFTECWNIVWTTPYIMKLALSAGIGGLLFGYDTGVISGALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFIGAIIMAIAPQPWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFTKAPGTWRWMLGVAGLPAVVQFGLMMMLPESPRWLYRQNKVDEARAILEKIYPxxxxxxxxxxxxxxxxxxxxxEGLIGKDMISRLKGAFGNKIVRRGLYAGVTVQVAQQFVGINTVMYYSPTIVQFAGFASKSTALALSLVTSGLNALGSIVSMAFVDKYGRRRLMIVSMFGLSSCLVALAVVFFQAAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAHKGNEYLPGACLIDEKSTDTLCSDEHRTYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEIYPLRYRGVGGGIAAVSNWTSNLIVSLTFLTLTEALGSAGTFLLFAGFSLLGLVAIYLLVPETKGLAFEEVEKMLETGFKPSAFMKKSNKSEMHA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	576	2.2.26 [Sep-21-2011]
O23492	582	Inositol transporter 4 OS	yes	no	0.994	0.984	0.710	0.0
Q9ZQP6	580	Probable inositol transpo	no	no	0.996	0.989	0.649	0.0
Q9C757	580	Probable inositol transpo	no	no	0.980	0.974	0.605	0.0
Q8VZR6	509	Inositol transporter 1 OS	no	no	0.779	0.882	0.420	2e-98
Q96QE2	648	Proton myo-inositol cotra	yes	no	0.925	0.822	0.376	7e-93
Q3UHK1	637	Proton myo-inositol cotra	yes	no	0.902	0.816	0.382	2e-91
Q921A2	637	Proton myo-inositol cotra	yes	no	0.894	0.808	0.386	1e-90
P30606	609	Myo-inositol transporter	yes	no	0.822	0.778	0.311	3e-67
Q01440	547	Membrane transporter D1 O	N/A	no	0.550	0.579	0.396	2e-57
C0SPB2	457	Putative metabolite trans	yes	no	0.539	0.680	0.384	2e-56

>sp|O23492|INT4_ARATH Inositol transporter 4 OS=Arabidopsis thaliana GN=INT4 PE=1 SV=1

 Score =  836 bits (2160), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 410/577 (71%), Positives = 474/577 (82%), Gaps = 4/577 (0%)

Query: 1   MVEGGVSKASKTEFTECWNIVWTTPYIMKLALSAGIGGLLFGYDTGVISGALLYIKEDFR 60
           MVEGG++KA KTEFTECW   W TPYIM+LALSAGIGGLLFGYDTGVISGALL+IKEDF 
Sbjct: 1   MVEGGIAKADKTEFTECWRTTWKTPYIMRLALSAGIGGLLFGYDTGVISGALLFIKEDFD 60

Query: 61  DVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFIGAIIMAIAPQP 120
           +V+KKTWLQ  IVSMAVAGAI GA  GGWIND+FGR++S+L ADVLF IGAI+MA AP P
Sbjct: 61  EVDKKTWLQSTIVSMAVAGAIVGAAVGGWINDKFGRRMSILIADVLFLIGAIVMAFAPAP 120

Query: 121 WVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFT 180
           WVII+GRIFVG GVGMASMT+PLYISEASPA+IRGALVS NG LITGGQF +YLINLAF 
Sbjct: 121 WVIIVGRIFVGFGVGMASMTSPLYISEASPARIRGALVSTNGLLITGGQFFSYLINLAFV 180

Query: 181 KAPGTWRWMLGVAGLPAVVQFGLMMMLPESPRWLYRQNKVDEARAILEKIYPADQVEEEV 240
             PGTWRWMLGVAG+PA+VQF LM+ LPESPRWLYR++++ E+RAILE+IYPAD+VE E+
Sbjct: 181 HTPGTWRWMLGVAGVPAIVQFVLMLSLPESPRWLYRKDRIAESRAILERIYPADEVEAEM 240

Query: 241 NLLKQSVENEKAEEGLIGKDMISRLKGAFGNKIVRRGLYAGVTVQVAQQFVGINTVMYYS 300
             LK SVE EKA+E +IG    ++LKGAFGN +VRRGL AG+TVQVAQQFVGINTVMYYS
Sbjct: 241 EALKLSVEAEKADEAIIGDSFSAKLKGAFGNPVVRRGLAAGITVQVAQQFVGINTVMYYS 300

Query: 301 PTIVQFAGFASKSTALALSLVTSGLNALGSIVSMAFVDKYGRRRLMIVSMFGLSSCLVAL 360
           P+IVQFAG+AS  TA+ALSL+TSGLNALGSIVSM FVD+YGRR+LMI+SMFG+ +CL+ L
Sbjct: 301 PSIVQFAGYASNKTAMALSLITSGLNALGSIVSMMFVDRYGRRKLMIISMFGIIACLIIL 360

Query: 361 AVVFFQAAIHAPTVSQIESSHFGGNNTCPAY----ITDGNAKSWNCMDCLKAKCGFCAHK 416
           A VF QAAIHAP +   ES  F  N TC AY      +     WNCM CL+++CGFCA  
Sbjct: 361 ATVFSQAAIHAPKIDAFESRTFAPNATCSAYAPLAAENAPPSRWNCMKCLRSECGFCASG 420

Query: 417 GNEYLPGACLIDEKSTDTLCSDEHRTYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAPW 476
              Y PGAC++        CS   RT+F  GCPS FG+LA+VFLG YI+ Y+PGMGT PW
Sbjct: 421 VQPYAPGACVVLSDDMKATCSSRGRTFFKDGCPSKFGFLAIVFLGLYIVVYAPGMGTVPW 480

Query: 477 IVNSEIYPLRYRGVGGGIAAVSNWTSNLIVSLTFLTLTEALGSAGTFLLFAGFSLLGLVA 536
           IVNSEIYPLRYRG+GGGIAAVSNW SNLIVS +FL+LT ALGS+GTFLLFAGFS +GL  
Sbjct: 481 IVNSEIYPLRYRGLGGGIAAVSNWVSNLIVSESFLSLTHALGSSGTFLLFAGFSTIGLFF 540

Query: 537 IYLLVPETKGLAFEEVEKMLETGFKPSAFMKKSNKSE 573
           I+LLVPETKGL FEEVEK+LE GFKPS   ++  K +
Sbjct: 541 IWLLVPETKGLQFEEVEKLLEVGFKPSLLRRREKKGK 577

Plasma membrane inositol-proton symporter. Mediates high-affinity myoinositol-proton symport across the plasma membrane. Active with myoinositol, scylloinositol and D-chiroinositol. Low activity with mucoinositol and alloinositol.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZQP6|INT3_ARATH Probable inositol transporter 3 OS=Arabidopsis thaliana GN=INT3 PE=2 SV=1

 Score =  774 bits (1998), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 376/579 (64%), Positives = 458/579 (79%), Gaps = 5/579 (0%)

Query: 1   MVEGGVSKASKTEFTECWNIVWTTPYIMKLALSAGIGGLLFGYDTGVISGALLYIKEDFR 60
           MVE   SK+ +   TE W   W TPYIM+LALSAGIGGLLFGY+TGVI+GALLYIKE+F 
Sbjct: 1   MVEEA-SKSEQINITEVWTTTWETPYIMRLALSAGIGGLLFGYNTGVIAGALLYIKEEFG 59

Query: 61  DVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFIGAIIMAIAPQP 120
           +V+ KTWLQE+IVSM VAGAI GA  GGW ND+FGR++S+L ADVLF +GA++M IA  P
Sbjct: 60  EVDNKTWLQEIIVSMTVAGAIVGAAIGGWYNDKFGRRMSVLIADVLFLLGALVMVIAHAP 119

Query: 121 WVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFT 180
           WVIILGR+ VG GVGMASMT+PLYISE SPA+IRGALVS NG LITGGQFL+YLINLAF 
Sbjct: 120 WVIILGRLLVGFGVGMASMTSPLYISEMSPARIRGALVSTNGLLITGGQFLSYLINLAFV 179

Query: 181 KAPGTWRWMLGVAGLPAVVQFGLMMMLPESPRWLYRQNKVDEARAILEKIYPADQVEEEV 240
             PGTWRWMLGV+ +PA++QF LM+ LPESPRWLYR ++  E+R ILE+IYPA+ VE E+
Sbjct: 180 HTPGTWRWMLGVSAIPAIIQFCLMLTLPESPRWLYRNDRKAESRDILERIYPAEMVEAEI 239

Query: 241 NLLKQSVENEKAEEGLIGKDMISRLKGAFGNKIVRRGLYAGVTVQVAQQFVGINTVMYYS 300
             LK+SV  E A+E +IG     +L+GA  N +VR GL AG+TVQVAQQFVGINTVMYYS
Sbjct: 240 AALKESVRAETADEDIIGHTFSDKLRGALSNPVVRHGLAAGITVQVAQQFVGINTVMYYS 299

Query: 301 PTIVQFAGFASKSTALALSLVTSGLNALGSIVSMAFVDKYGRRRLMIVSMFGLSSCLVAL 360
           PTI+QFAG+AS  TA+AL+L+TSGLNA+GS+VSM FVD+YGRR+LMI+SMFG+ +CLV L
Sbjct: 300 PTILQFAGYASNKTAMALALITSGLNAVGSVVSMMFVDRYGRRKLMIISMFGIITCLVIL 359

Query: 361 AVVFFQAAIHAPTVSQIESSHFGGNNTCPAYITDGNAKS----WNCMDCLKAKCGFCAHK 416
           A VF +A+ HAP + + +S +F  N TCPA+     ++S    WNCM CL+  CGFC++ 
Sbjct: 360 AAVFNEASNHAPKIDKRDSRNFAKNATCPAFAPFTASRSPPSNWNCMKCLQYDCGFCSNG 419

Query: 417 GNEYLPGACLIDEKSTDTLCSDEHRTYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAPW 476
             EY PGAC++       LC  + RT+F  GCPS FG+LA+VFLG YII Y+PGMGT PW
Sbjct: 420 AQEYAPGACIVQSADMKALCHSKGRTFFKDGCPSKFGYLAIVFLGLYIIVYAPGMGTVPW 479

Query: 477 IVNSEIYPLRYRGVGGGIAAVSNWTSNLIVSLTFLTLTEALGSAGTFLLFAGFSLLGLVA 536
           IVNSEIYPLRYRG+ GGIAAVSNW SNL+VS TFLTLT A+GS+GTFLLFAG S +GL  
Sbjct: 480 IVNSEIYPLRYRGLAGGIAAVSNWMSNLVVSETFLTLTNAVGSSGTFLLFAGSSAVGLFF 539

Query: 537 IYLLVPETKGLAFEEVEKMLETGFKPSAFMKKSNKSEMH 575
           I+LLVPETKGL FEEVEK+LE GF+PS     + ++++ 
Sbjct: 540 IWLLVPETKGLQFEEVEKLLEGGFRPSLLRPTTKENQVE 578

Plasma membrane inositol-proton symporter.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C757|INT2_ARATH Probable inositol transporter 2 OS=Arabidopsis thaliana GN=INT2 PE=1 SV=1

 Score =  687 bits (1772), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 349/576 (60%), Positives = 440/576 (76%), Gaps = 11/576 (1%)

Query: 2   VEGGVSK--ASKTEFTECWNIVWTTPYIMKLALSAGIGGLLFGYDTGVISGALLYIKEDF 59
           +EGG+    A ++ F EC+++ W  PY+++LA SAGIGGLLFGYDTGVISGALLYI++DF
Sbjct: 1   MEGGIIHGGADESAFKECFSLTWKNPYVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDF 60

Query: 60  RDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFIGAIIMAIAPQ 119
           + V++ TWLQE+IVSMAVAGAI GA  GGW ND+ GR+ ++L AD LF +GAIIMA AP 
Sbjct: 61  KSVDRNTWLQEMIVSMAVAGAIVGAAIGGWANDKLGRRSAILMADFLFLLGAIIMAAAPN 120

Query: 120 PWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAF 179
           P ++++GR+FVGLGVGMASMTAPLYISEASPAKIRGALVS NGFLITGGQFL+YLINLAF
Sbjct: 121 PSLLVVGRVFVGLGVGMASMTAPLYISEASPAKIRGALVSTNGFLITGGQFLSYLINLAF 180

Query: 180 TKAPGTWRWMLGVAGLPAVVQFGLMMMLPESPRWLYRQNKVDEARAILEKIYPADQVEEE 239
           T   GTWRWMLG+AG+PA++QF LM  LPESPRWLYR+ + +EA+AIL +IY A+ VE+E
Sbjct: 181 TDVTGTWRWMLGIAGIPALLQFVLMFTLPESPRWLYRKGREEEAKAILRRIYSAEDVEQE 240

Query: 240 VNLLKQSVENEKAEEGLIGK-DMISRLKGAFGNKIVRRGLYAGVTVQVAQQFVGINTVMY 298
           +  LK SVE E  EEG   K +MI   K     K VRRGL AGV +QV QQFVGINTVMY
Sbjct: 241 IRALKDSVETEILEEGSSEKINMIKLCKA----KTVRRGLIAGVGLQVFQQFVGINTVMY 296

Query: 299 YSPTIVQFAGFASKSTALALSLVTSGLNALGSIVSMAFVDKYGRRRLMIVSMFGLSSCLV 358
           YSPTIVQ AGFAS  TAL LSLVT+GLNA GSI+S+ F+D+ GR++L+I+S+FG+   L 
Sbjct: 297 YSPTIVQLAGFASNRTALLLSLVTAGLNAFGSIISIYFIDRIGRKKLLIISLFGVIISLG 356

Query: 359 ALAVVFFQAAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKA---KCGFCAH 415
            L  VF++AA HAP +S +E+  F  N +CP Y +  N  +W+CM CLKA    CG+C+ 
Sbjct: 357 ILTGVFYEAATHAPAISSLETQRF-NNISCPDYKSAMNTNAWDCMTCLKASSPSCGYCSS 415

Query: 416 KGNEYLPGACLIDEKSTDTLCSDEHRTYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAP 475
              +  PGAC I + S   LC +E+R ++  GCPS+FGW A++ LG YII +SPGMGT P
Sbjct: 416 PIGKEHPGACWISDDSVKDLCHNENRLWYTRGCPSNFGWFALLGLGLYIIFFSPGMGTVP 475

Query: 476 WIVNSEIYPLRYRGVGGGIAAVSNWTSNLIVSLTFLTLTEALGSAGTFLLFAGFSLLGLV 535
           WIVNSEIYPLR+RG+ GGIAA +NW SNLIV+ +FL+LTEA+G++ TFL+F   S++ L+
Sbjct: 476 WIVNSEIYPLRFRGICGGIAATANWISNLIVAQSFLSLTEAIGTSWTFLIFGVISVIALL 535

Query: 536 AIYLLVPETKGLAFEEVEKMLETGFKPSAFMKKSNK 571
            + + VPETKG+  EE+EKMLE       F KK +K
Sbjct: 536 FVMVCVPETKGMPMEEIEKMLERRSMEFKFWKKKSK 571

Plasma membrane inositol-proton symporter. Specific for several inositol epimers, such as myoinositol and scylloinositol. D-chiroinositol, mucoinositol, alloinositol and pinitol are also transported with a lower activity. Not active with galactinol and phytate.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8VZR6|INT1_ARATH Inositol transporter 1 OS=Arabidopsis thaliana GN=INT1 PE=1 SV=1

 Score =  360 bits (923), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 223/530 (42%), Positives = 312/530 (58%), Gaps = 81/530 (15%)

Query: 26  YIMKLALSAGIGGLLFGYDTGVISGALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAG 85
           YI+ L ++AGIGGLLFGYDTGVISGALLYIK+DF  V++ ++LQE IVSMA+ GA+ GA 
Sbjct: 30  YILGLTVTAGIGGLLFGYDTGVISGALLYIKDDFEVVKQSSFLQETIVSMALVGAMIGAA 89

Query: 86  FGGWINDRFGRKISLLGADVLFFIGAIIMAIAPQPWVIILGRIFVGLGVGMASMTAPLYI 145
            GGWIND +GRK + L ADV+F  GAI+MA AP P+V+I GR+ VGLGVG+AS+TAP+YI
Sbjct: 90  AGGWINDYYGRKKATLFADVVFAAGAIVMAAAPDPYVLISGRLLVGLGVGVASVTAPVYI 149

Query: 146 SEASPAKIRGALVSANGFLITGGQFLAYLINLAFTKAPGTWRWMLGVAGLPAVVQFGLMM 205
           +EASP+++RG LVS N  +ITGGQFL+YL+N AFT+ PGTWRWMLGV+G+PAV+QF LM+
Sbjct: 150 AEASPSEVRGGLVSTNVLMITGGQFLSYLVNSAFTQVPGTWRWMLGVSGVPAVIQFILML 209

Query: 206 MLPESPRWLYRQNKVDEARAILEKIYPADQVEEEVNLLKQSVENEKAEEGLIGKDMISRL 265
            +PESPRWL+ +N+  EA  +L + Y   ++E+E++ L  + E EK  +  +G       
Sbjct: 210 FMPESPRWLFMKNRKAEAIQVLARTYDISRLEDEIDHLSAAEEEEKQRKRTVG------Y 263

Query: 266 KGAFGNKIVRRGLYAGVTVQVAQQFVGINTVMYYSPTIVQFAGFASKSTALALSLVTSGL 325
              F +K +R    AG  +Q  QQF GINTVMYYSPTIVQ AGF S   AL LSL+ + +
Sbjct: 264 LDVFRSKELRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQMAGFHSNQLALFLSLIVAAM 323

Query: 326 NALGSIVSMAFVDKYGRRRLMIVSMFGLSSCLVALAVVFFQAAIHAPTVSQIESSHFGGN 385
           NA G++V + F+D  GR++L + S+FG+   L+ L+V FF+         Q E+S     
Sbjct: 324 NAAGTVVGIYFIDHCGRKKLALSSLFGVIISLLILSVSFFK---------QSETS----- 369

Query: 386 NTCPAYITDGNAKSWNCMDCLKAKCGFCAHKGNEYLPGACLIDEKSTDTLCSDEHRTYFI 445
                  +DG    W  +  L     F A       PG   +       +   ++R    
Sbjct: 370 -------SDGGLYGWLAVLGLALYIVFFA-------PGMGPVPWTVNSEIYPQQYRG-IC 414

Query: 446 SGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEIYPLRYRGVGGGIAAVSNWTSNLI 505
            G  ++  W++ + +    +T +   GT                                
Sbjct: 415 GGMSATVNWISNLIVAQTFLTIAEAAGTG------------------------------- 443

Query: 506 VSLTFLTLTEALGSAGTFLLFAGFSLLGLVAIYLLVPETKGLAFEEVEKM 555
             +TFL L             AG ++L ++ + + VPET+GL F EVE++
Sbjct: 444 --MTFLIL-------------AGIAVLAVIFVIVFVPETQGLTFSEVEQI 478

Vacuolar inositol-proton symporter involved in the release of myo-inositol from vacuoles. Not involved in glucose or fructose transport.

Arabidopsis thaliana (taxid: 3702)

>sp|Q96QE2|MYCT_HUMAN Proton myo-inositol cotransporter OS=Homo sapiens GN=SLC2A13 PE=1 SV=3

 Score =  341 bits (875), Expect = 7e-93,   Method: Compositional matrix adjust.
 Identities = 214/568 (37%), Positives = 328/568 (57%), Gaps = 35/568 (6%)

Query: 6   VSKASKTEFTECWNIVWTTPYIMKLALSAGIGGLLFGYDTGVISGALLYIKEDFRDVEKK 65
           + +A++ +F +      T  ++  +A+ + +GG LFGYDTGV+SGA+L +K   R +   
Sbjct: 64  LERAARRQFQQ----DETPAFVYVVAVFSALGGFLFGYDTGVVSGAMLLLK---RQLSLD 116

Query: 66  TWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFIGAIIMAIAPQPWVIIL 125
              QEL+VS  V  A   A  GG +N  FGR+ ++L A  LF  G+ ++A A     ++ 
Sbjct: 117 ALWQELLVSSTVGAAAVSALAGGALNGVFGRRAAILLASALFTAGSAVLAAANNKETLLA 176

Query: 126 GRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFTK-APG 184
           GR+ VGLG+G+ASMT P+YI+E SP  +RG LV+ N   ITGGQF A +++ AF+     
Sbjct: 177 GRLVVGLGIGIASMTVPVYIAEVSPPNLRGRLVTINTLFITGGQFFASVVDGAFSYLQKD 236

Query: 185 TWRWMLGVAGLPAVVQFGLMMMLPESPRWLYRQNKVDEARAILEKIYPADQVEEEVNLLK 244
            WR+MLG+A +PAV+QF   + LPESPRWL ++ +  +AR IL ++     ++EE + +K
Sbjct: 237 GWRYMLGLAAVPAVIQFFGFLFLPESPRWLIQKGQTQKARRILSQMRGNQTIDEEYDSIK 296

Query: 245 QSVENEKAEEGLIGKDMISRLKGAFGNKIVRRGLYAGVTVQVAQQFVGINTVMYYSPTIV 304
            ++E E+ E G  G  +I R+         RR L  G  +Q+ QQ  GINT+MYYS TI+
Sbjct: 297 NNIEEEEKEVGSAGP-VICRM---LSYPPTRRALIVGCGLQMFQQLSGINTIMYYSATIL 352

Query: 305 QFAGFASKSTALALSLVTSGLNALGSIVSMAFVDKYGRRRLMIVSMFGLSSCLVALAVVF 364
           Q +G      A+ L+ VT+  N + ++V +  V+K GRR+L   S+ G +  L+ LA+ F
Sbjct: 353 QMSGVEDDRLAIWLASVTAFTNFIFTLVGVWLVEKVGRRKLTFGSLAGTTVALIILALGF 412

Query: 365 FQAAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDC-LKAKCGFCAHKGNE--YL 421
             +A  +P ++    +  G N TC  Y          C +C L   CGFC +K N+   +
Sbjct: 413 VLSAQVSPRITFKPIAPSGQNATCTRYSY--------CNECMLDPDCGFC-YKMNKSTVI 463

Query: 422 PGACL-IDEKSTDTL----CSDEHRT------YFISGCPSSFGWLAVVFLGAYIITYSPG 470
             +C+ +++ ST+      C +E +       +  + CP+ + W A++ L  Y++ ++PG
Sbjct: 464 DSSCVPVNKASTNEAAWGRCENETKFKTEDIFWAYNFCPTPYSWTALLGLILYLVFFAPG 523

Query: 471 MGTAPWIVNSEIYPLRYRGVGGGIAAVSNWTSNLIVSLTFLTLTEALGSAGTFLLFAGFS 530
           MG  PW VNSEIYPL  R  G   ++  NW  N++VSLTFL   E L   G F L+AGF+
Sbjct: 524 MGPMPWTVNSEIYPLWARSTGNACSSGINWIFNVLVSLTFLHTAEYLTYYGAFFLYAGFA 583

Query: 531 LLGLVAIYLLVPETKGLAFEEVEKMLET 558
            +GL+ IY  +PETKG   EE+E + + 
Sbjct: 584 AVGLLFIYGCLPETKGKKLEEIESLFDN 611

H(+)-myo-inositol cotransporter. Can also transport related stereoisomers.

Homo sapiens (taxid: 9606)

>sp|Q3UHK1|MYCT_MOUSE Proton myo-inositol cotransporter OS=Mus musculus GN=Slc2a13 PE=2 SV=2

 Score =  337 bits (863), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 210/549 (38%), Positives = 313/549 (57%), Gaps = 29/549 (5%)

Query: 23  TTPYIMKLALSAGIGGLLFGYDTGVISGALLYIKEDFRDVEKKTWLQELIVSMAVAGAIF 82
           T  ++   A  + +GG LFGYDTGV+SGA+L ++   R      W QEL+VS AV  A  
Sbjct: 66  TPAFVYAAAAFSALGGFLFGYDTGVVSGAMLLLRRQMR--LGAMW-QELLVSGAVGAAAV 122

Query: 83  GAGFGGWINDRFGRKISLLGADVLFFIGAIIMAIAPQPWVIILGRIFVGLGVGMASMTAP 142
            A  GG +N   GR+ ++L A  L  +G+ ++A A     ++ GR+ VGLG+G+ASMT P
Sbjct: 123 AALAGGALNGALGRRSAILLASALCTVGSAVLAAAANKETLLAGRLVVGLGIGIASMTVP 182

Query: 143 LYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFTK-APGTWRWMLGVAGLPAVVQF 201
           +YI+E SP  +RG LV+ N   ITGGQF A +++ AF+      WR+MLG+A +PAV+QF
Sbjct: 183 VYIAEVSPPNLRGRLVTINTLFITGGQFFASVVDGAFSYLQKDGWRYMLGLAAIPAVIQF 242

Query: 202 GLMMMLPESPRWLYRQNKVDEARAILEKIYPADQVEEEVNLLKQSVENEKAEEGLIGKDM 261
              + LPESPRWL ++ +  +AR IL ++     ++EE + ++ S+E E+ E    G  +
Sbjct: 243 LGFLFLPESPRWLIQKGQTQKARRILSQMRGNQTIDEEYDSIRNSIEEEEKEATAAGP-I 301

Query: 262 ISRLKGAFGNKIVRRGLYAGVTVQVAQQFVGINTVMYYSPTIVQFAGFASKSTALALSLV 321
           I R+         RR L  G  +Q+ QQ  GINT+MYYS TI+Q +G      A+ L+ +
Sbjct: 302 ICRM---LSYPPTRRALVVGCGLQMFQQLSGINTIMYYSATILQMSGVEDDRLAIWLASI 358

Query: 322 TSGLNALGSIVSMAFVDKYGRRRLMIVSMFGLSSCLVALAVVFFQAAIHAPTVSQIESSH 381
           T+  N + ++V +  V+K GRR+L   S+ G +  L+ LA+ F  +A  +P V+   ++ 
Sbjct: 359 TAFTNFIFTLVGVWLVEKVGRRKLTFGSLAGTTVALIILALGFLLSAQVSPRVTFRPTTP 418

Query: 382 FGGNNTCPAYITDGNAKSWNCMDC-LKAKCGFCAH-KGNEYLPGACLIDEKSTDT----- 434
              N TC  Y          C +C L   CGFC    G+  +  +C+   K++ T     
Sbjct: 419 SDQNTTCTGYSY--------CNECMLDPDCGFCYKINGSAVIDSSCVPVNKASTTEAAWG 470

Query: 435 LCSDEHR------TYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEIYPLRYR 488
            C +E +       +  S CP+ + W A+V L  Y++ ++PGMG  PW VNSEIYPL  R
Sbjct: 471 RCDNETKFKAEGAHWAYSFCPTPYSWTALVGLVLYLVFFAPGMGPMPWTVNSEIYPLWAR 530

Query: 489 GVGGGIAAVSNWTSNLIVSLTFLTLTEALGSAGTFLLFAGFSLLGLVAIYLLVPETKGLA 548
             G   +A  NW  N++VSLTFL   E L   G F L+AGF+ +GL+ +Y  +PETKG  
Sbjct: 531 STGNACSAGINWIFNVLVSLTFLHTAEYLTYYGAFFLYAGFAAVGLLFVYGCLPETKGKK 590

Query: 549 FEEVEKMLE 557
            EE+E + +
Sbjct: 591 LEEIESLFD 599

H(+)-myo-inositol cotransporter. Can also transport related stereoisomers.

Mus musculus (taxid: 10090)

>sp|Q921A2|MYCT_RAT Proton myo-inositol cotransporter OS=Rattus norvegicus GN=Slc2a13 PE=2 SV=2

 Score =  334 bits (856), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 214/554 (38%), Positives = 307/554 (55%), Gaps = 39/554 (7%)

Query: 23  TTPYIMKLALSAGIGGLLFGYDTGVISGALLYIKEDFRDVEKKTWLQELIVSMAVAGAIF 82
           T  ++   A  + +GG LFGYDTGV+SGA+L ++   R      W QEL+VS AV  A  
Sbjct: 66  TPAFVYAAAAFSALGGFLFGYDTGVVSGAMLLLRRQMR--LGAMW-QELLVSGAVGAAAV 122

Query: 83  GAGFGGWINDRFGRKISLLGADVLFFIGAIIMAIAPQPWVIILGRIFVGLGVGMASMTAP 142
            A  GG +N   GR+ ++L A  L  +G+ ++A A     ++ GR+ VGLG+G+ASMT P
Sbjct: 123 AALAGGALNGALGRRSAILLASALCTVGSAVLAAAANKETLLAGRLVVGLGIGIASMTVP 182

Query: 143 LYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFTK-APGTWRWMLGVAGLPAVVQF 201
           +YI+E SP  +RG LV+ N   ITGGQF A +++ AF+      WR+MLG+A +PAV+QF
Sbjct: 183 VYIAEVSPPNLRGRLVTINTLFITGGQFFASVVDGAFSYLQKDGWRYMLGLAAIPAVIQF 242

Query: 202 GLMMMLPESPRWLYRQNKVDEARAILEKIYPADQVEEEVNLLKQSVENEKAEEGLIGKDM 261
              + LPESPRWL ++ +  +AR IL ++     ++EE + ++ S+E E+ E    G  +
Sbjct: 243 LGFLFLPESPRWLIQKGQTQKARRILSQMRGNQTIDEEYDSIRNSIEEEEKEASAAGP-I 301

Query: 262 ISRLKGAFGNKIVRRGLYAGVTVQVAQQFVGINTVMYYSPTIVQFAGFASKSTALALSLV 321
           I R+         RR L  G  +Q+ QQ  GINT+MYYS TI+Q +G      A+ L+ +
Sbjct: 302 ICRM---LSYPPTRRALAVGCGLQMFQQLSGINTIMYYSATILQMSGVEDDRLAIWLASI 358

Query: 322 TSGLNALGSIVSMAFVDKYGRRRLMIVSMFGLSSCLVALAVVFFQAAIHAPTVSQIESSH 381
           T+  N + ++V +  V+K GRR+L   S+ G +  L  LA+ F  +A  +P V+   ++ 
Sbjct: 359 TAFTNFIFTLVGVWLVEKVGRRKLTFGSLAGTTVALTILALGFLLSAQVSPRVTFRPTAP 418

Query: 382 FGGNNTCPAYITDGNAKSWNCMDC-LKAKCGFCAH-----------------KGNEYLPG 423
            G N TC  Y          C +C L   CGFC                     NE   G
Sbjct: 419 SGQNATCTEYSY--------CNECMLDPDCGFCYKINSSAVIDSSCVPVNKASTNEAAWG 470

Query: 424 ACLIDEKSTDTLCSDEHRTYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEIY 483
            C   E  T     D H  Y  S CP+ + W A+V L  Y++ ++PGMG  PW VNSEIY
Sbjct: 471 RC---ENETKFKAEDVHWAY--SFCPTPYSWTALVGLVLYLVFFAPGMGPMPWTVNSEIY 525

Query: 484 PLRYRGVGGGIAAVSNWTSNLIVSLTFLTLTEALGSAGTFLLFAGFSLLGLVAIYLLVPE 543
           PL  R  G   +A  NW  N++VSLTFL   E L   G F L+AGF+ +GL+ +Y  +PE
Sbjct: 526 PLWARSTGNACSAGINWIFNVLVSLTFLHTAEYLTYYGAFFLYAGFAAVGLLFVYGCLPE 585

Query: 544 TKGLAFEEVEKMLE 557
           TKG   EE+E + +
Sbjct: 586 TKGKKLEEIESLFD 599

H(+)-myo-inositol cotransporter. Can also transport related stereoisomers.

Rattus norvegicus (taxid: 10116)

>sp|P30606|ITR2_YEAST Myo-inositol transporter 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ITR2 PE=1 SV=2

 Score =  256 bits (654), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 175/561 (31%), Positives = 273/561 (48%), Gaps = 87/561 (15%)

Query: 24  TPYIMKLALSAGIGGLLFGYDTGVISGALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFG 83
           +P+I+ L   A I G +FGYDTG IS AL+ I  D  +       +ELI +    GA+  
Sbjct: 106 SPFIITLTFVASISGFMFGYDTGYISSALISINRDLDNKVLTYGEKELITAATSLGALIT 165

Query: 84  AGFGGWINDRFGRKISLLGADVLFFIGAIIMAIAPQPWVIILGRIFVGLGVGMASMTAPL 143
           +   G   D FGR+  L+ ++++F IGAI+   A + W +  GR+ +G GVG+ S+ +PL
Sbjct: 166 SVGAGTAADVFGRRPCLMFSNLMFLIGAILQITAHKFWQMAAGRLIMGFGVGIGSLISPL 225

Query: 144 YISEASPAKIRGALVSANGFLITGGQFLAYLINLAFTKAPGTWRWMLGVAGLPAVVQFGL 203
           +ISE +P  IRG L   N   +TGGQ +AY            WR ++G++ +P V+QF  
Sbjct: 226 FISEIAPKMIRGRLTVINSLWLTGGQLIAYGCGAGLNHVKNGWRILVGLSLIPTVLQFSF 285

Query: 204 MMMLPESPRWLYRQNKVDEARAILEKIYPA------DQVEEEVNLLKQSVENEKAEEGLI 257
              LP++PR+   +  +  A+ +L++ Y        DQ  EE++ L QS+  +      I
Sbjct: 286 FCFLPDTPRYYVMKGDLKRAKMVLKRSYVNTEDEIIDQKVEELSSLNQSIPGKNP----I 341

Query: 258 GK--DMISRLKGAFGNKIVRRGLYAGVTVQVAQQFVGINTVMYYSPTIVQFAGFASKSTA 315
            K  +M+  L     N    R L  G  +Q  QQF G N++MY+S TI +  GF + S  
Sbjct: 342 TKFWNMVKELHTVPSN---FRALIIGCGLQAIQQFTGWNSLMYFSGTIFETVGFKNSS-- 396

Query: 316 LALSLVTSGLNALGSIVSMAFVDKYGRRRLMIVSMFGLSSCLVALAVVFFQAAIHAPTVS 375
            A+S++ SG N + ++++   +DK GRR ++++ + G++  LV  A+ F           
Sbjct: 397 -AVSIIVSGTNFVFTLIAFFCIDKIGRRYILLIGLPGMTVALVICAIAF----------- 444

Query: 376 QIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAHKGNEYLPGACLIDEKSTDTL 435
                HF G               +N  D + A  GF                       
Sbjct: 445 -----HFLG-------------IKFNGADAVVASDGF----------------------- 463

Query: 436 CSDEHRTYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEIYPLRYRGVGGGIA 495
                         SS+G + +VF+  Y   Y+ G+GT PW   SE++P   RGVG   A
Sbjct: 464 --------------SSWGIVIIVFIIVYAAFYALGIGTVPW-QQSELFPQNVRGVGTSYA 508

Query: 496 AVSNWTSNLIVSLTFLTLTEALGSAGTFLLFAGFSLLGLVAIYLLVPETKGLAFEEVEKM 555
             +NW  +L+++ TFLT+ + +   GTF  FAG + L  +  Y   PE  GL  EEV+ +
Sbjct: 509 TATNWAGSLVIASTFLTMLQNITPTGTFSFFAGVACLSTIFCYFCYPELSGLELEEVQTI 568

Query: 556 LETGF--KPSAFMKKSNKSEM 574
           L+ GF  K S  + K  K ++
Sbjct: 569 LKDGFNIKASKALAKKRKQQV 589

Minor transporter for myo-inositol.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q01440|GTR1_LEIDO Membrane transporter D1 OS=Leishmania donovani PE=3 SV=1

 Score =  224 bits (570), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 134/338 (39%), Positives = 200/338 (59%), Gaps = 21/338 (6%)

Query: 32  LSAGIGGLLFGYDTGVISGALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWIN 91
           L A +GG LFGYDTGVI+ AL  +K+ F    + +W   LIV++A+AGA  GA   G+I+
Sbjct: 7   LCAALGGFLFGYDTGVINAALFQMKDHF-GFSEHSWQYALIVAIAIAGAFVGAFISGFIS 65

Query: 92  DRFGRKISLLGADVLFFIGAIIMAIAPQPWVIILGRIFVGLGVGMASMTAPLYISEASPA 151
             FGR+  +  AD LF IG+++M  AP   V+++ R+ VGL +G++S T P+Y++E +  
Sbjct: 66  AAFGRRPCIAVADALFVIGSVLMGAAPNVEVVLVSRVIVGLAIGISSATIPVYLAEVTSP 125

Query: 152 KIRGALVSANGFLITGGQFLA---YLINLAFTKAPGTWRWMLGVAGLPAVVQ-FGLMMML 207
           K RGA +  N   +TGGQF+A     I + FT     WR  +G+  LPAVVQ F L+  L
Sbjct: 126 KHRGATIVLNNLFLTGGQFVAAGFTAIMVVFTSKNIGWRVAIGIGALPAVVQAFCLLFFL 185

Query: 208 PESPRWLYRQNKVDEARAILEKIYPADQVEEEVNLLKQSVENEKAEEGLIGKDMISRLKG 267
           PESPRWL  +   D A+A+ +K +  D  E +      SV  +     L+ +DM  R+  
Sbjct: 186 PESPRWLLSKGHADRAKAVADK-FEVDLCEFQEGDELPSVRIDY--RPLMARDMRFRV-- 240

Query: 268 AFGNKIVRRGLYAGVTVQVAQQFVGINTVMYYSPTIVQFAGFASKSTALALSLVTSGLNA 327
                ++  GL      Q+ QQF GINT+MYYS  I+  AGF      + LS+  + +NA
Sbjct: 241 -----VLSSGL------QIIQQFSGINTIMYYSSVILYDAGFRDAIMPVVLSIPLAFMNA 289

Query: 328 LGSIVSMAFVDKYGRRRLMIVSMFGLSSCLVALAVVFF 365
           L + V++  VD++GRRR++++S+FG    LV +A++ F
Sbjct: 290 LFTAVAIFTVDRFGRRRMLLISVFGCLVLLVVIAIIGF 327

Leishmania donovani (taxid: 5661)

>sp|C0SPB2|YWTG_BACSU Putative metabolite transport protein YwtG OS=Bacillus subtilis (strain 168) GN=ywtG PE=3 SV=1

 Score =  220 bits (561), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 126/328 (38%), Positives = 202/328 (61%), Gaps = 17/328 (5%)

Query: 36  IGGLLFGYDTGVISGALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFG 95
           +GG L+GYDTGVISGA+L++K   +++    + + L+VS  + GAI G+G  G + DRFG
Sbjct: 15  LGGALYGYDTGVISGAILFMK---KELGLNAFTEGLVVSSLLVGAILGSGAAGKLTDRFG 71

Query: 96  RKISLLGADVLFFIGAIIMAIAPQPWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRG 155
           RK +++ A +LF IG + +A+AP   V++L RI +GL VG ++   PLY+SE +P   RG
Sbjct: 72  RKKAIMAAALLFCIGGLGVALAPNTGVMVLFRIILGLAVGTSTTIVPLYLSELAPKHKRG 131

Query: 156 ALVSANGFLITGGQFLAYLINLAFTKAPGTWRWMLGVAGLPAVVQFGLMMMLPESPRWLY 215
           AL S N  +IT G  L+Y++N  F  A   WRWMLG+A +P+++    ++ +PESPRWL+
Sbjct: 132 ALSSLNQLMITVGILLSYIVNYIFADAE-AWRWMLGLAAVPSLLLLIGILFMPESPRWLF 190

Query: 216 RQNKVDEARAILEKIYPADQVEEEVNLLKQSVENEKAEEGLIGKDMISRLKGAFGNKIVR 275
              +  +A+ ILEK+     +++E++ +K   E EK +EG         LK  F +  VR
Sbjct: 191 TNGEESKAKKILEKLRGTKDIDQEIHDIK---EAEKQDEG--------GLKELF-DPWVR 238

Query: 276 RGLYAGVTVQVAQQFVGINTVMYYSPTIVQFAGFASKSTALALSLVTSGLNALGSIVSMA 335
             L AG+ +   QQF+G NT++YY+P      GF + ++ L  ++    +N L ++V++ 
Sbjct: 239 PALIAGLGLAFLQQFIGTNTIIYYAPKTFTNVGFGNSASILG-TVGIGTVNVLMTLVAIK 297

Query: 336 FVDKYGRRRLMIVSMFGLSSCLVALAVV 363
            +DK GR+ L++    G+   L+ LA+V
Sbjct: 298 IIDKIGRKPLLLFGNAGMVISLIVLALV 325

Bacillus subtilis (strain 168) (taxid: 224308)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	576
224089677	579	predicted protein [Populus trichocarpa]	0.998	0.993	0.733	0.0
224137276	573	predicted protein [Populus trichocarpa]	0.991	0.996	0.722	0.0
224089685	576	predicted protein [Populus trichocarpa]	0.994	0.994	0.716	0.0
9652186	581	putative Na+/myo-inositol symporter [Mes	0.991	0.982	0.731	0.0
297804542	582	ATINT4 [Arabidopsis lyrata subsp. lyrata	0.994	0.984	0.712	0.0
15235767	582	inositol transporter 4 [Arabidopsis thal	0.994	0.984	0.710	0.0
225469276	585	PREDICTED: inositol transporter 4 isofor	0.973	0.958	0.738	0.0
356532347	577	PREDICTED: inositol transporter 4-like [	0.980	0.979	0.700	0.0
255574651	580	sugar transporter, putative [Ricinus com	0.977	0.970	0.708	0.0
449434400	575	PREDICTED: inositol transporter 4-like [	0.973	0.975	0.722	0.0

>gi|224089677|ref|XP_002308797.1| predicted protein [Populus trichocarpa] gi|222854773|gb|EEE92320.1| predicted protein [Populus trichocarpa]

 Score =  852 bits (2202), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 422/575 (73%), Positives = 489/575 (85%)

Query: 1   MVEGGVSKASKTEFTECWNIVWTTPYIMKLALSAGIGGLLFGYDTGVISGALLYIKEDFR 60
           MVEGGV+ A KTEFTECW  VW TPYIM+LALSAGIGGLLFGYDTGVISGALLYI++DF 
Sbjct: 1   MVEGGVATADKTEFTECWRTVWKTPYIMRLALSAGIGGLLFGYDTGVISGALLYIRDDFE 60

Query: 61  DVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFIGAIIMAIAPQP 120
           DV++KTWLQE IVSMAVAGAI GA FGG+INDR+GR++++LGADV+FF GA++MA+AP+P
Sbjct: 61  DVDRKTWLQETIVSMAVAGAIVGAAFGGYINDRWGRRVAILGADVVFFFGAVVMAVAPKP 120

Query: 121 WVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFT 180
           WVI++GRIFVGLGVGMASMTAPLYISEASPA+IRGALVS NG LITGGQFL+YLINL FT
Sbjct: 121 WVIVIGRIFVGLGVGMASMTAPLYISEASPARIRGALVSTNGLLITGGQFLSYLINLGFT 180

Query: 181 KAPGTWRWMLGVAGLPAVVQFGLMMMLPESPRWLYRQNKVDEARAILEKIYPADQVEEEV 240
           KAPGTWRWMLGVAG+PAVVQF LM+ LPESPRWLYR+++VDEARAILEKIYPA +VE+E+
Sbjct: 181 KAPGTWRWMLGVAGVPAVVQFVLMLSLPESPRWLYRKDRVDEARAILEKIYPAHEVEQEL 240

Query: 241 NLLKQSVENEKAEEGLIGKDMISRLKGAFGNKIVRRGLYAGVTVQVAQQFVGINTVMYYS 300
           N LK SVE EKA+E  IG+ MI+++ GAF NK+VRRGLYAG+TVQVAQQFVGINTVMYY+
Sbjct: 241 NALKSSVEAEKADEAAIGEGMITKVMGAFKNKVVRRGLYAGITVQVAQQFVGINTVMYYA 300

Query: 301 PTIVQFAGFASKSTALALSLVTSGLNALGSIVSMAFVDKYGRRRLMIVSMFGLSSCLVAL 360
           PTIVQFAGFAS S AL LSL+TSGLNA+GSIVSM FVD+YGRRRLMI+SM G+ S LV L
Sbjct: 301 PTIVQFAGFASNSVALTLSLITSGLNAVGSIVSMCFVDRYGRRRLMIISMIGIISFLVIL 360

Query: 361 AVVFFQAAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAHKGNEY 420
           +VVF +A+ HAP VS IE++HFG N+TCP ++T  +A  W+CM CLKA CGFCA+  +E 
Sbjct: 361 SVVFIEASNHAPKVSGIETAHFGTNSTCPRFLTASDASRWSCMTCLKADCGFCANAVSEI 420

Query: 421 LPGACLIDEKSTDTLCSDEHRTYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNS 480
            PGACL   K+    C  E R +F  GCPS FG+LAV+ LG YII+YSPGMGT PWIVNS
Sbjct: 421 HPGACLDSTKAIRGDCRAEKRVFFEKGCPSRFGFLAVILLGLYIISYSPGMGTVPWIVNS 480

Query: 481 EIYPLRYRGVGGGIAAVSNWTSNLIVSLTFLTLTEALGSAGTFLLFAGFSLLGLVAIYLL 540
           EIYPLRYRGV GGIAAVSNW SNLIVS ++L+LTEALG+ GTF LFAG S + L  IY L
Sbjct: 481 EIYPLRYRGVCGGIAAVSNWCSNLIVSESYLSLTEALGAGGTFFLFAGISTISLTFIYFL 540

Query: 541 VPETKGLAFEEVEKMLETGFKPSAFMKKSNKSEMH 575
           VPETKGL FEEVEK+LE G+KP  F  K  KS+  
Sbjct: 541 VPETKGLQFEEVEKLLEDGYKPRLFRGKKEKSKYQ 575

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224137276|ref|XP_002322517.1| predicted protein [Populus trichocarpa] gi|222867147|gb|EEF04278.1| predicted protein [Populus trichocarpa]

 Score =  850 bits (2197), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 414/573 (72%), Positives = 486/573 (84%), Gaps = 2/573 (0%)

Query: 1   MVEGGVSKASKTEFTECWNIVWTTPYIMKLALSAGIGGLLFGYDTGVISGALLYIKEDFR 60
           MVEGGV+ A KTEFTECW  VW TPYIM+LA SAGIGGLLFGYDTGVISGALLYI++DF 
Sbjct: 1   MVEGGVTTADKTEFTECWKTVWKTPYIMRLAFSAGIGGLLFGYDTGVISGALLYIRDDFE 60

Query: 61  DVEKKTWLQ--ELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFIGAIIMAIAP 118
           DV+K TW+Q  E IVSMAVAGAI GA FGG++NDR+GR++++LGAD++FF GAI+MA+AP
Sbjct: 61  DVDKNTWMQAIETIVSMAVAGAIIGAAFGGYMNDRWGRRVAILGADIIFFFGAIVMAVAP 120

Query: 119 QPWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLA 178
            PWVII+GRI VGLGVGMASMTAPLYISEASPA+IRGALVS NG LITGGQFL+YLINLA
Sbjct: 121 NPWVIIIGRILVGLGVGMASMTAPLYISEASPARIRGALVSTNGLLITGGQFLSYLINLA 180

Query: 179 FTKAPGTWRWMLGVAGLPAVVQFGLMMMLPESPRWLYRQNKVDEARAILEKIYPADQVEE 238
           FTKAPGTWRWMLGVAG+PA+VQF LM+ LPESPRWLYR+++VDEARAILEKIYPA +VE+
Sbjct: 181 FTKAPGTWRWMLGVAGIPALVQFVLMLSLPESPRWLYRKDRVDEARAILEKIYPAHEVED 240

Query: 239 EVNLLKQSVENEKAEEGLIGKDMISRLKGAFGNKIVRRGLYAGVTVQVAQQFVGINTVMY 298
           E+N LK SV+ EKA+E  +G+ MI+++KGA  N++VRRGLYAG+TVQVAQQFVGINTVMY
Sbjct: 241 ELNALKLSVDAEKADEAALGEGMIAKVKGALKNRVVRRGLYAGITVQVAQQFVGINTVMY 300

Query: 299 YSPTIVQFAGFASKSTALALSLVTSGLNALGSIVSMAFVDKYGRRRLMIVSMFGLSSCLV 358
           Y+PTIVQFAGFAS S ALALSL+TSGLNA+GSIVSM FVD+YGRRRLM+VSM G+   LV
Sbjct: 301 YAPTIVQFAGFASNSVALALSLITSGLNAVGSIVSMCFVDRYGRRRLMLVSMIGIIFFLV 360

Query: 359 ALAVVFFQAAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAHKGN 418
            L+VVF +A+ HAP +S IES+HFG N+TC AY+T  +A  W+CM CLKA C FCA+  +
Sbjct: 361 ILSVVFMEASSHAPKISGIESAHFGSNSTCSAYLTAPDAPRWSCMTCLKADCAFCANAAS 420

Query: 419 EYLPGACLIDEKSTDTLCSDEHRTYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIV 478
           E+ PGACL   K     C  E+R +F  GCPS FG+LAV+ LG YII+YSPGMGT PWIV
Sbjct: 421 EFHPGACLDSSKVVRGECRAENRVFFEKGCPSKFGFLAVILLGLYIISYSPGMGTVPWIV 480

Query: 479 NSEIYPLRYRGVGGGIAAVSNWTSNLIVSLTFLTLTEALGSAGTFLLFAGFSLLGLVAIY 538
           NSEIYPLRYRGVGGGIAAV+NW SNLIVS ++L+LTEALG+ GTF +FAG S + LV IY
Sbjct: 481 NSEIYPLRYRGVGGGIAAVANWCSNLIVSESYLSLTEALGAGGTFFVFAGISTISLVFIY 540

Query: 539 LLVPETKGLAFEEVEKMLETGFKPSAFMKKSNK 571
            LVPETKGL FEEVEK+LE G++P  F  K  K
Sbjct: 541 FLVPETKGLQFEEVEKLLEDGYRPRLFGGKKEK 573

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224089685|ref|XP_002308798.1| predicted protein [Populus trichocarpa] gi|222854774|gb|EEE92321.1| predicted protein [Populus trichocarpa]

 Score =  845 bits (2182), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 411/574 (71%), Positives = 480/574 (83%), Gaps = 1/574 (0%)

Query: 1   MVEGGVSKAS-KTEFTECWNIVWTTPYIMKLALSAGIGGLLFGYDTGVISGALLYIKEDF 59
           MVEGGV KA+ KTEFTECW + W TPYIM+LA SAGIGGLLFGYDTGVISGALLYIKEDF
Sbjct: 1   MVEGGVVKAADKTEFTECWKVTWKTPYIMRLAFSAGIGGLLFGYDTGVISGALLYIKEDF 60

Query: 60  RDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFIGAIIMAIAPQ 119
             V + T+LQELIVS  V GAIFGA  GG+ +D  GR+ ++L AD LFF+GAI+MA+AP 
Sbjct: 61  EAVGRNTFLQELIVSTCVLGAIFGAAIGGFCSDSLGRRKTILVADFLFFVGAIVMAVAPH 120

Query: 120 PWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAF 179
           PW+II+GR  VGLGVGMASMTAPLYISEASPA+IRGALVS NG +ITGGQFLAYLINLAF
Sbjct: 121 PWIIIVGRFLVGLGVGMASMTAPLYISEASPARIRGALVSMNGLMITGGQFLAYLINLAF 180

Query: 180 TKAPGTWRWMLGVAGLPAVVQFGLMMMLPESPRWLYRQNKVDEARAILEKIYPADQVEEE 239
           T+APGTWRWMLGVAG PA++QF LM+ LPESPRWLYR NKVDEAR IL +IYP D+VE E
Sbjct: 181 TRAPGTWRWMLGVAGTPALIQFVLMLSLPESPRWLYRANKVDEARTILARIYPPDEVENE 240

Query: 240 VNLLKQSVENEKAEEGLIGKDMISRLKGAFGNKIVRRGLYAGVTVQVAQQFVGINTVMYY 299
           +N LK+SV+ EK  E  IG   +S++KGAF + +VRRGLYAG+TVQVAQQFVGINTVMYY
Sbjct: 241 INALKESVQKEKEIEDSIGTTTLSKVKGAFKDPVVRRGLYAGITVQVAQQFVGINTVMYY 300

Query: 300 SPTIVQFAGFASKSTALALSLVTSGLNALGSIVSMAFVDKYGRRRLMIVSMFGLSSCLVA 359
           SPTIVQFAGFASKS ALALSLVTSGLNALGSI+SM FVD+YGRR+LMI+SMFG+ +CLV 
Sbjct: 301 SPTIVQFAGFASKSVALALSLVTSGLNALGSIISMLFVDRYGRRKLMIISMFGIITCLVV 360

Query: 360 LAVVFFQAAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAHKGNE 419
           LA+VF QA+IH+P +SQ+ES+HFG N+TCP+Y ++ N   W+CM CLKA+C FC++  N+
Sbjct: 361 LAIVFQQASIHSPGISQVESAHFGANSTCPSYFSNVNKNKWDCMSCLKAQCSFCSNAENQ 420

Query: 420 YLPGACLIDEKSTDTLCSDEHRTYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVN 479
           Y PGACL+ +K     C  + R +F  GCPS  G+ AV+ LG YII+YSPGMGTAPWIVN
Sbjct: 421 YHPGACLVSKKDLKGSCLAQKRVWFEEGCPSKIGFFAVILLGLYIISYSPGMGTAPWIVN 480

Query: 480 SEIYPLRYRGVGGGIAAVSNWTSNLIVSLTFLTLTEALGSAGTFLLFAGFSLLGLVAIYL 539
           SEIYPLRYRGVGGGIAAV+NWTSNLIVSLTFLTLTE L  AG FLLFAG S L L+AI+ 
Sbjct: 481 SEIYPLRYRGVGGGIAAVANWTSNLIVSLTFLTLTETLTVAGAFLLFAGISFLALIAIFF 540

Query: 540 LVPETKGLAFEEVEKMLETGFKPSAFMKKSNKSE 573
           LVPETKGL FEEVEKML++GF+P  F K +  ++
Sbjct: 541 LVPETKGLQFEEVEKMLKSGFRPKLFGKNTKGAD 574

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|9652186|gb|AAF91432.1|AF280432_1 putative Na+/myo-inositol symporter [Mesembryanthemum crystallinum]

 Score =  842 bits (2176), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 420/574 (73%), Positives = 481/574 (83%), Gaps = 3/574 (0%)

Query: 1   MVEGGVSKASKTEFTECWNIVWTTPYIMKLALSAGIGGLLFGYDTGVISGALLYIKEDFR 60
           MVEGG+ KA KTEFTEC+  +  TPYI++LA SAGIGGLLFGYDTGVISGALLYIKEDF+
Sbjct: 1   MVEGGIVKADKTEFTECFRTIGKTPYILRLAFSAGIGGLLFGYDTGVISGALLYIKEDFK 60

Query: 61  DVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFIGAIIMAIAPQP 120
           +VE+KTWLQE IV+MAVAGAI GAG GG++ND+FGRK +++ AD+LFFIGAIIM++AP P
Sbjct: 61  EVERKTWLQETIVAMAVAGAIIGAGVGGYLNDKFGRKPAIIIADILFFIGAIIMSLAPAP 120

Query: 121 WVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFT 180
           W+IILGRIFVGLGVGMASMT+PLYISE SP +IR ALVS NG LITG QFL+YLINL FT
Sbjct: 121 WMIILGRIFVGLGVGMASMTSPLYISETSPTRIRSALVSTNGLLITGSQFLSYLINLGFT 180

Query: 181 KAPGTWRWMLGVAGLPAVVQFGLMMMLPESPRWLYRQNKVDEARAILEKIYPADQVEEEV 240
           +  GTWRWMLGVA +PA VQ  LM+ LPESPRWLYR+NKV EA AIL +IYP ++VEEE+
Sbjct: 181 RVKGTWRWMLGVAAVPAFVQLLLMLSLPESPRWLYRKNKVVEAEAILARIYPPEEVEEEM 240

Query: 241 NLLKQSVENEKAEEGLI-GKDMISRLKGAFGNKIVRRGLYAGVTVQVAQQFVGINTVMYY 299
             LK S+E E AEEG I G  M+S+++ A+GNKIVRRGLYAG+TVQVAQQFVGINTVMYY
Sbjct: 241 RALKASIEYEMAEEGEIGGGSMLSKVRKAWGNKIVRRGLYAGITVQVAQQFVGINTVMYY 300

Query: 300 SPTIVQFAGFASKSTALALSLVTSGLNALGSIVSMAFVDKYGRRRLMIVSMFGLSSCLVA 359
           SPTIVQ AGFAS STALALSLVTSGLNA+GSIVSM FVD++GRRRLMI+SMFG+ +CL+ 
Sbjct: 301 SPTIVQLAGFASNSTALALSLVTSGLNAIGSIVSMMFVDRHGRRRLMIISMFGIITCLIV 360

Query: 360 LAVVFFQAAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKA--KCGFCAHKG 417
           LA+ FFQAA HAP +S  ES+HFG N+TCPAY T  N  +WNCM CL+A  +C FC +KG
Sbjct: 361 LAIGFFQAAAHAPKISHAESTHFGLNSTCPAYTTTRNPATWNCMTCLQAASECAFCTNKG 420

Query: 418 NEYLPGACLIDEKSTDTLCSDEHRTYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAPWI 477
           N+ LPG C+    +    C  E R YF  GCPS FG+LAV+ LGAYII+YSPGMGT PWI
Sbjct: 421 NQLLPGGCVSRTDAMKVACHGEKRVYFTEGCPSKFGFLAVILLGAYIISYSPGMGTVPWI 480

Query: 478 VNSEIYPLRYRGVGGGIAAVSNWTSNLIVSLTFLTLTEALGSAGTFLLFAGFSLLGLVAI 537
           VNSEIYPLRYRGVGGGIAAVSNWTSNLIVS TFLTLTEALG+AGTFLLFAGFS +GLV I
Sbjct: 481 VNSEIYPLRYRGVGGGIAAVSNWTSNLIVSETFLTLTEALGAAGTFLLFAGFSAIGLVFI 540

Query: 538 YLLVPETKGLAFEEVEKMLETGFKPSAFMKKSNK 571
           YLLVPETKGL  EEVE MLE GFKPS F    +K
Sbjct: 541 YLLVPETKGLPIEEVEHMLENGFKPSIFRGNKDK 574

Source: Mesembryanthemum crystallinum

Species: Mesembryanthemum crystallinum

Genus: Mesembryanthemum

Family: Aizoaceae

Order: Caryophyllales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297804542|ref|XP_002870155.1| ATINT4 [Arabidopsis lyrata subsp. lyrata] gi|297315991|gb|EFH46414.1| ATINT4 [Arabidopsis lyrata subsp. lyrata]

 Score =  842 bits (2174), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 411/577 (71%), Positives = 478/577 (82%), Gaps = 4/577 (0%)

Query: 1   MVEGGVSKASKTEFTECWNIVWTTPYIMKLALSAGIGGLLFGYDTGVISGALLYIKEDFR 60
           MVEGG++KA KTEFTECW   W TPYIM+LALSAGIGGLLFGYDTGVISGALL+IKEDF 
Sbjct: 1   MVEGGIAKADKTEFTECWRTTWKTPYIMRLALSAGIGGLLFGYDTGVISGALLFIKEDFD 60

Query: 61  DVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFIGAIIMAIAPQP 120
           +V+KKTWLQ  IVSMAVAGAI GA  GGWINDRFGR++S+L ADVLF IGAI+MA AP P
Sbjct: 61  EVDKKTWLQSTIVSMAVAGAIVGAAIGGWINDRFGRRMSILIADVLFLIGAIVMAFAPAP 120

Query: 121 WVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFT 180
           WVII+GRIFVG GVGMASMT+PLYISEASPA+IRGALVS NG LITGGQF +YLINLAF 
Sbjct: 121 WVIIVGRIFVGFGVGMASMTSPLYISEASPARIRGALVSTNGLLITGGQFFSYLINLAFV 180

Query: 181 KAPGTWRWMLGVAGLPAVVQFGLMMMLPESPRWLYRQNKVDEARAILEKIYPADQVEEEV 240
             PGTWRWMLGVAG+PA+VQF LM+ LPESPRWLYR+++V E+RAILE+IYPAD+VE E+
Sbjct: 181 HTPGTWRWMLGVAGIPAIVQFVLMLSLPESPRWLYRKDRVAESRAILERIYPADEVEAEM 240

Query: 241 NLLKQSVENEKAEEGLIGKDMISRLKGAFGNKIVRRGLYAGVTVQVAQQFVGINTVMYYS 300
             LKQSVE EKA+E +IG    +++KGAFGN +VRRGL AG+TVQVAQQFVGINTVMYYS
Sbjct: 241 EALKQSVEAEKADEAIIGDSFTAKMKGAFGNPVVRRGLAAGITVQVAQQFVGINTVMYYS 300

Query: 301 PTIVQFAGFASKSTALALSLVTSGLNALGSIVSMAFVDKYGRRRLMIVSMFGLSSCLVAL 360
           P+IVQFAG+AS  TA+ALSL+TSGLNALGSIVSM FVD+YGRR+LMI+SMFG+ +CL+ L
Sbjct: 301 PSIVQFAGYASNKTAMALSLITSGLNALGSIVSMMFVDRYGRRKLMIISMFGIITCLIIL 360

Query: 361 AVVFFQAAIHAPTVSQIESSHFGGNNTCPAY----ITDGNAKSWNCMDCLKAKCGFCAHK 416
           A+VF QAAIHAP +  +ES  F  N TC AY      +     WNCM CL+++CGFCA  
Sbjct: 361 AIVFSQAAIHAPKIDALESRMFAPNATCSAYAPLAAENAPPSRWNCMKCLRSECGFCASG 420

Query: 417 GNEYLPGACLIDEKSTDTLCSDEHRTYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAPW 476
              Y PGAC++        CS   RT+F  GCPS FG+LA+VFLG YI+ Y+PGMGT PW
Sbjct: 421 VQPYAPGACVVLSDEMKATCSSRGRTFFKDGCPSKFGFLAIVFLGLYIVVYAPGMGTVPW 480

Query: 477 IVNSEIYPLRYRGVGGGIAAVSNWTSNLIVSLTFLTLTEALGSAGTFLLFAGFSLLGLVA 536
           IVNSEIYPLRYRG+GGGIAAVSNW SNLIVS +FL+LT ALGS+GTFLLFAGFS +GL  
Sbjct: 481 IVNSEIYPLRYRGLGGGIAAVSNWVSNLIVSESFLSLTHALGSSGTFLLFAGFSTIGLFF 540

Query: 537 IYLLVPETKGLAFEEVEKMLETGFKPSAFMKKSNKSE 573
           I+LLVPETKGL FEEVEK+LE G+KPS   +++ K +
Sbjct: 541 IWLLVPETKGLQFEEVEKLLEVGYKPSLLRRRNKKGK 577

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15235767|ref|NP_193381.1| inositol transporter 4 [Arabidopsis thaliana] gi|75318122|sp|O23492.1|INT4_ARATH RecName: Full=Inositol transporter 4; AltName: Full=Myo-inositol-proton symporter INT4; AltName: Full=Protein INOSITOL TRANSPORTER 4 gi|2245004|emb|CAB10424.1| membrane transporter like protein [Arabidopsis thaliana] gi|7268398|emb|CAB78690.1| membrane transporter like protein [Arabidopsis thaliana] gi|28393478|gb|AAO42160.1| putative membrane transporter [Arabidopsis thaliana] gi|28973605|gb|AAO64127.1| putative membrane transporter [Arabidopsis thaliana] gi|84617973|emb|CAJ00306.1| inositol transporter 4 [Arabidopsis thaliana] gi|332658359|gb|AEE83759.1| inositol transporter 4 [Arabidopsis thaliana]

 Score =  836 bits (2160), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 410/577 (71%), Positives = 474/577 (82%), Gaps = 4/577 (0%)

Query: 1   MVEGGVSKASKTEFTECWNIVWTTPYIMKLALSAGIGGLLFGYDTGVISGALLYIKEDFR 60
           MVEGG++KA KTEFTECW   W TPYIM+LALSAGIGGLLFGYDTGVISGALL+IKEDF 
Sbjct: 1   MVEGGIAKADKTEFTECWRTTWKTPYIMRLALSAGIGGLLFGYDTGVISGALLFIKEDFD 60

Query: 61  DVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFIGAIIMAIAPQP 120
           +V+KKTWLQ  IVSMAVAGAI GA  GGWIND+FGR++S+L ADVLF IGAI+MA AP P
Sbjct: 61  EVDKKTWLQSTIVSMAVAGAIVGAAVGGWINDKFGRRMSILIADVLFLIGAIVMAFAPAP 120

Query: 121 WVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFT 180
           WVII+GRIFVG GVGMASMT+PLYISEASPA+IRGALVS NG LITGGQF +YLINLAF 
Sbjct: 121 WVIIVGRIFVGFGVGMASMTSPLYISEASPARIRGALVSTNGLLITGGQFFSYLINLAFV 180

Query: 181 KAPGTWRWMLGVAGLPAVVQFGLMMMLPESPRWLYRQNKVDEARAILEKIYPADQVEEEV 240
             PGTWRWMLGVAG+PA+VQF LM+ LPESPRWLYR++++ E+RAILE+IYPAD+VE E+
Sbjct: 181 HTPGTWRWMLGVAGVPAIVQFVLMLSLPESPRWLYRKDRIAESRAILERIYPADEVEAEM 240

Query: 241 NLLKQSVENEKAEEGLIGKDMISRLKGAFGNKIVRRGLYAGVTVQVAQQFVGINTVMYYS 300
             LK SVE EKA+E +IG    ++LKGAFGN +VRRGL AG+TVQVAQQFVGINTVMYYS
Sbjct: 241 EALKLSVEAEKADEAIIGDSFSAKLKGAFGNPVVRRGLAAGITVQVAQQFVGINTVMYYS 300

Query: 301 PTIVQFAGFASKSTALALSLVTSGLNALGSIVSMAFVDKYGRRRLMIVSMFGLSSCLVAL 360
           P+IVQFAG+AS  TA+ALSL+TSGLNALGSIVSM FVD+YGRR+LMI+SMFG+ +CL+ L
Sbjct: 301 PSIVQFAGYASNKTAMALSLITSGLNALGSIVSMMFVDRYGRRKLMIISMFGIIACLIIL 360

Query: 361 AVVFFQAAIHAPTVSQIESSHFGGNNTCPAY----ITDGNAKSWNCMDCLKAKCGFCAHK 416
           A VF QAAIHAP +   ES  F  N TC AY      +     WNCM CL+++CGFCA  
Sbjct: 361 ATVFSQAAIHAPKIDAFESRTFAPNATCSAYAPLAAENAPPSRWNCMKCLRSECGFCASG 420

Query: 417 GNEYLPGACLIDEKSTDTLCSDEHRTYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAPW 476
              Y PGAC++        CS   RT+F  GCPS FG+LA+VFLG YI+ Y+PGMGT PW
Sbjct: 421 VQPYAPGACVVLSDDMKATCSSRGRTFFKDGCPSKFGFLAIVFLGLYIVVYAPGMGTVPW 480

Query: 477 IVNSEIYPLRYRGVGGGIAAVSNWTSNLIVSLTFLTLTEALGSAGTFLLFAGFSLLGLVA 536
           IVNSEIYPLRYRG+GGGIAAVSNW SNLIVS +FL+LT ALGS+GTFLLFAGFS +GL  
Sbjct: 481 IVNSEIYPLRYRGLGGGIAAVSNWVSNLIVSESFLSLTHALGSSGTFLLFAGFSTIGLFF 540

Query: 537 IYLLVPETKGLAFEEVEKMLETGFKPSAFMKKSNKSE 573
           I+LLVPETKGL FEEVEK+LE GFKPS   ++  K +
Sbjct: 541 IWLLVPETKGLQFEEVEKLLEVGFKPSLLRRREKKGK 577

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225469276|ref|XP_002267982.1| PREDICTED: inositol transporter 4 isoform 1 [Vitis vinifera] gi|302141645|emb|CBI18776.3| unnamed protein product [Vitis vinifera] gi|310877900|gb|ADP37181.1| putative inositol transporter [Vitis vinifera]

 Score =  830 bits (2145), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 418/566 (73%), Positives = 482/566 (85%), Gaps = 5/566 (0%)

Query: 1   MVEGGVSKASKTEFTECWNIVWTTPYIMKLALSAGIGGLLFGYDTGVISGALLYIKEDFR 60
           MVEGG+ KA K EFTECW  +W TPYIM+LALSAGIGGLLFGYDTGVISGALLYI+EDF 
Sbjct: 1   MVEGGIIKADKVEFTECWQTIWKTPYIMRLALSAGIGGLLFGYDTGVISGALLYIREDFD 60

Query: 61  DVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFIGAIIMAIAPQP 120
            V++KTWLQE IVSMAVAGAI GA  GGW NDRFGRK+S+L ADVLFF GAI+MA+AP P
Sbjct: 61  VVDRKTWLQETIVSMAVAGAIVGAAVGGWANDRFGRKMSILAADVLFFAGAIVMAVAPAP 120

Query: 121 WVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFT 180
           WVIILGRI VG GVGMASMT+PLYISEASPA+IRGALVS+NG LITGGQFL+YLINLAFT
Sbjct: 121 WVIILGRILVGFGVGMASMTSPLYISEASPARIRGALVSSNGLLITGGQFLSYLINLAFT 180

Query: 181 KAPGTWRWMLGVAGLPAVVQFGLMMMLPESPRWLYRQNKVDEARAILEKIYPADQVEEEV 240
            APGTWRWMLGVAGLPAVVQF LM+ LPESPRWLYRQN+ DEARA+LEKIYP+D+VEEE+
Sbjct: 181 HAPGTWRWMLGVAGLPAVVQFVLMLSLPESPRWLYRQNREDEARAVLEKIYPSDKVEEEM 240

Query: 241 NLLKQSVENEKAEEGLIGKDMISRLKGAFGNKIVRRGLYAGVTVQVAQQFVGINTVMYYS 300
           N L+ SVE EKA+   +G ++  R+K A  N +VRRGLYAGVTVQV QQFVGINTVMYYS
Sbjct: 241 NALQSSVEAEKADLEALGSNIFQRVKQAVKNDVVRRGLYAGVTVQVVQQFVGINTVMYYS 300

Query: 301 PTIVQFAGFASKSTALALSLVTSGLNALGSIVSMAFVDKYGRRRLMIVSMFGLSSCLVAL 360
           PTIVQ AGFAS  TALALSL+TSGLNA+GSI+SM FVD+ GRR LMI+S+FG+ +CLVAL
Sbjct: 301 PTIVQLAGFASNKTALALSLITSGLNAVGSIISMMFVDRKGRRTLMIISLFGIITCLVAL 360

Query: 361 AVVFFQAAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKA-KCGFCAHKGNE 419
           +++FFQAA H+P V ++ES+ +GGN+TC AY+ + ++ SWNCMDCLKA  C FC +   +
Sbjct: 361 SIIFFQAAAHSPLVGRVESNSYGGNSTCSAYLREQHSSSWNCMDCLKATDCAFCTNSAGK 420

Query: 420 YLPGACLID-EKSTDTL---CSDEHRTYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAP 475
           YLPGACL   E   DTL   C   H T++ +GCP+ FG +A++ LGAYII YSPGMGT P
Sbjct: 421 YLPGACLASTEAVKDTLRAECRAHHGTWYTNGCPTKFGVVAILLLGAYIIAYSPGMGTVP 480

Query: 476 WIVNSEIYPLRYRGVGGGIAAVSNWTSNLIVSLTFLTLTEALGSAGTFLLFAGFSLLGLV 535
           WIVNSEIYPLRYRG+GGGIAAV+NW SNL+VS TFLTLTE LGSAGTFLLFAGFSL+GLV
Sbjct: 481 WIVNSEIYPLRYRGIGGGIAAVANWVSNLLVSETFLTLTEHLGSAGTFLLFAGFSLIGLV 540

Query: 536 AIYLLVPETKGLAFEEVEKMLETGFK 561
           AIY +VPETKGLAFEEVEKML+ G +
Sbjct: 541 AIYFVVPETKGLAFEEVEKMLQKGIR 566

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356532347|ref|XP_003534735.1| PREDICTED: inositol transporter 4-like [Glycine max]

 Score =  818 bits (2114), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 396/565 (70%), Positives = 466/565 (82%)

Query: 9   ASKTEFTECWNIVWTTPYIMKLALSAGIGGLLFGYDTGVISGALLYIKEDFRDVEKKTWL 68
           ASKTEFTECW     +PYIM+LALSAGIGGLLFGYDTGVISGALLYI++DF  V+KKTWL
Sbjct: 6   ASKTEFTECWRRTTESPYIMRLALSAGIGGLLFGYDTGVISGALLYIRDDFDQVDKKTWL 65

Query: 69  QELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFIGAIIMAIAPQPWVIILGRI 128
           QE IVSMAVAGAI GA  GGWIND+ GRK ++L ADV+FFIGA++M++AP PWVII+GR+
Sbjct: 66  QETIVSMAVAGAIIGAALGGWINDKLGRKRTILVADVVFFIGALVMSLAPSPWVIIVGRV 125

Query: 129 FVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFTKAPGTWRW 188
           FVGLGVGMASMTAPLYISEASPAKIRGALVS N FLITGGQFL+YL+NLAFTKAPGTWRW
Sbjct: 126 FVGLGVGMASMTAPLYISEASPAKIRGALVSINAFLITGGQFLSYLVNLAFTKAPGTWRW 185

Query: 189 MLGVAGLPAVVQFGLMMMLPESPRWLYRQNKVDEARAILEKIYPADQVEEEVNLLKQSVE 248
           MLGVAG+PAV+QF LM+ LPESPRWLYRQNK +EA+ IL KIY   +VEEE+  +++SVE
Sbjct: 186 MLGVAGVPAVIQFVLMLSLPESPRWLYRQNKEEEAKHILSKIYRPSEVEEEMRAMQESVE 245

Query: 249 NEKAEEGLIGKDMISRLKGAFGNKIVRRGLYAGVTVQVAQQFVGINTVMYYSPTIVQFAG 308
            E+AEEGLIG  +  +LK    N +VRR LYAG+TVQVAQQ VGINTVMYYSPTIVQFAG
Sbjct: 246 AERAEEGLIGHSLAQKLKNVLANDVVRRALYAGITVQVAQQLVGINTVMYYSPTIVQFAG 305

Query: 309 FASKSTALALSLVTSGLNALGSIVSMAFVDKYGRRRLMIVSMFGLSSCLVALAVVFFQAA 368
            AS STALALSLVTSGLNA+GSI+SM F+D+YGRR+LM++SM G+  CL+ L+V F QAA
Sbjct: 306 IASNSTALALSLVTSGLNAVGSILSMLFIDRYGRRKLMLISMIGIIVCLIMLSVTFNQAA 365

Query: 369 IHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAHKGNEYLPGACLID 428
            HAP +S  ++  FG N+TC AY    N  SWNCM CL+  C FCA   ++ LPGACL  
Sbjct: 366 HHAPAISNQDTLSFGANSTCQAYTKAPNFSSWNCMHCLQVDCAFCASSESDVLPGACLAA 425

Query: 429 EKSTDTLCSDEHRTYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEIYPLRYR 488
           +KS   +C  ++R +F  GCPS  G LAVV LG YII YSPGMGT PW++NSEIYPLR+R
Sbjct: 426 DKSMRGMCQAQNRVWFSKGCPSKIGILAVVILGLYIIAYSPGMGTVPWVLNSEIYPLRFR 485

Query: 489 GVGGGIAAVSNWTSNLIVSLTFLTLTEALGSAGTFLLFAGFSLLGLVAIYLLVPETKGLA 548
           G+GGGIAAVSNW +NLIVS +FL++T+ LG+ GTFLLFAGFSL+GLVAIY LVPETKGL 
Sbjct: 486 GIGGGIAAVSNWCANLIVSESFLSMTKTLGTCGTFLLFAGFSLIGLVAIYALVPETKGLQ 545

Query: 549 FEEVEKMLETGFKPSAFMKKSNKSE 573
           FEEVEKML+ GFKP  F +K+  ++
Sbjct: 546 FEEVEKMLQKGFKPFPFNRKNEDNK 570

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255574651|ref|XP_002528235.1| sugar transporter, putative [Ricinus communis] gi|223532352|gb|EEF34150.1| sugar transporter, putative [Ricinus communis]

 Score =  811 bits (2094), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 399/563 (70%), Positives = 465/563 (82%)

Query: 1   MVEGGVSKASKTEFTECWNIVWTTPYIMKLALSAGIGGLLFGYDTGVISGALLYIKEDFR 60
           MVEG ++K  KTEFTECW +   TPYIM+LALSAGIGG LFGYDTGVISGALLYI++DF 
Sbjct: 1   MVEGAIAKPDKTEFTECWKMACRTPYIMRLALSAGIGGFLFGYDTGVISGALLYIRDDFE 60

Query: 61  DVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFIGAIIMAIAPQP 120
            V K T LQE IVSMAVAGAI GA FGG+INDRFGRKIS++ ADV+FF GA++MA AP P
Sbjct: 61  SVAKSTRLQEAIVSMAVAGAIIGAAFGGYINDRFGRKISIMLADVVFFFGALVMAGAPAP 120

Query: 121 WVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFT 180
            ++I+GRI VGLGVGMASMT+PLYISEASPA+IRGALVS NG LIT GQFLAYLINLAFT
Sbjct: 121 GILIVGRILVGLGVGMASMTSPLYISEASPARIRGALVSTNGLLITTGQFLAYLINLAFT 180

Query: 181 KAPGTWRWMLGVAGLPAVVQFGLMMMLPESPRWLYRQNKVDEARAILEKIYPADQVEEEV 240
           +  GTWRWMLGVA +PAVVQF LM+ LPESPR+LYRQNKVD+AR ILEKIY +D+V++E+
Sbjct: 181 RTNGTWRWMLGVAAVPAVVQFFLMISLPESPRFLYRQNKVDKAREILEKIYSSDEVDKEM 240

Query: 241 NLLKQSVENEKAEEGLIGKDMISRLKGAFGNKIVRRGLYAGVTVQVAQQFVGINTVMYYS 300
             L  SVE E A+E  IG+D+IS+L+GA  N +VRRGLYAG+TVQVAQQFVGINTVMYY+
Sbjct: 241 KALAASVEAEMADEVAIGEDLISKLRGALQNPVVRRGLYAGITVQVAQQFVGINTVMYYA 300

Query: 301 PTIVQFAGFASKSTALALSLVTSGLNALGSIVSMAFVDKYGRRRLMIVSMFGLSSCLVAL 360
           PTIVQFAGFAS S ALALSL+TSGLNA+G+I+S   VD+YGRRRLMIVSM G+   LVAL
Sbjct: 301 PTIVQFAGFASNSVALALSLITSGLNAVGTIISTVLVDRYGRRRLMIVSMIGIIGFLVAL 360

Query: 361 AVVFFQAAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAHKGNEY 420
           +VVF QA++HAP +S IES+HFG N+TCP +    +   WNCM CLKA CGFC+   + +
Sbjct: 361 SVVFMQASVHAPKISSIESAHFGANSTCPKFGAALDPSKWNCMSCLKADCGFCSSPSSTF 420

Query: 421 LPGACLIDEKSTDTLCSDEHRTYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNS 480
           LPGACL   K+T   C  EHR +F  GCPS FG+ AVV L  YIITY+PGMGT PWIVNS
Sbjct: 421 LPGACLDLTKATRGACGAEHRVFFEQGCPSRFGFFAVVLLALYIITYAPGMGTVPWIVNS 480

Query: 481 EIYPLRYRGVGGGIAAVSNWTSNLIVSLTFLTLTEALGSAGTFLLFAGFSLLGLVAIYLL 540
           EIYPLRYRG+GGGIAAVSNW+SNL+VS TFLTLTE LG+ GTFLLFAG S + LV IY  
Sbjct: 481 EIYPLRYRGLGGGIAAVSNWSSNLLVSDTFLTLTEHLGAGGTFLLFAGVSCISLVFIYWF 540

Query: 541 VPETKGLAFEEVEKMLETGFKPS 563
           VPETKGL FEEVE++LE G++P+
Sbjct: 541 VPETKGLQFEEVERILEEGYRPN 563

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449434400|ref|XP_004134984.1| PREDICTED: inositol transporter 4-like [Cucumis sativus] gi|449524462|ref|XP_004169242.1| PREDICTED: inositol transporter 4-like [Cucumis sativus]

 Score =  807 bits (2085), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 406/562 (72%), Positives = 473/562 (84%), Gaps = 1/562 (0%)

Query: 1   MVEGGVSKASKTEFTECWNIVWTTPYIMKLALSAGIGGLLFGYDTGVISGALLYIKEDFR 60
           MVEGG +KA K EF+ECW   W TPYIM+LALSAGIGGLLFGYDTGVISGA+LYIKEDF 
Sbjct: 1   MVEGGAAKADKAEFSECWQTTWKTPYIMRLALSAGIGGLLFGYDTGVISGAMLYIKEDFE 60

Query: 61  DVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFIGAIIMAIAPQP 120
            V++KTWLQE IVSMAVAGAI GA  GGW+ND+FGRK S+L ADV+FF+GAI+MA+AP P
Sbjct: 61  VVDRKTWLQETIVSMAVAGAIVGAAIGGWMNDKFGRKKSILVADVVFFLGAIVMAVAPFP 120

Query: 121 WVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFT 180
             II+GR+ VG GVGMASMTAPLYISEASPA+IRGALVS NG LITGGQF++YLINLAFT
Sbjct: 121 GFIIVGRLIVGFGVGMASMTAPLYISEASPARIRGALVSTNGLLITGGQFISYLINLAFT 180

Query: 181 KAPGTWRWMLGVAGLPAVVQFGLMMMLPESPRWLYRQNKVDEARAILEKIYPADQVEEEV 240
           K   TWR MLGVAGLPAVVQF LM+ LPESPRWLYR++KVDEARAILEKIYPA+QV+EE+
Sbjct: 181 KTKLTWRLMLGVAGLPAVVQFVLMLSLPESPRWLYRRDKVDEARAILEKIYPANQVDEEM 240

Query: 241 NLLKQSVENEKAEEGLIGK-DMISRLKGAFGNKIVRRGLYAGVTVQVAQQFVGINTVMYY 299
            LL +SVE+EK EEG IG   +I+++KGA  +++VRRGL+AG+ VQVAQQF GINTVMYY
Sbjct: 241 RLLHESVESEKTEEGAIGDGSIIAKVKGALSSQVVRRGLWAGIIVQVAQQFCGINTVMYY 300

Query: 300 SPTIVQFAGFASKSTALALSLVTSGLNALGSIVSMAFVDKYGRRRLMIVSMFGLSSCLVA 359
           SPTI+QFAG+AS +TA+ALSLVTS LNA G++VSM  VD+YGRRR+MI+SM G+  CLV 
Sbjct: 301 SPTIMQFAGYASNTTAMALSLVTSFLNAAGTVVSMLTVDRYGRRRIMIISMIGIIVCLVV 360

Query: 360 LAVVFFQAAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAHKGNE 419
           LA VFFQ+A HAP++  +ES+HFG N+TCPAY++  +A SWNCM CLK KCGFCA+  NE
Sbjct: 361 LAGVFFQSASHAPSIDALESTHFGSNSTCPAYVSAPDASSWNCMSCLKQKCGFCANGDNE 420

Query: 420 YLPGACLIDEKSTDTLCSDEHRTYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVN 479
           YLPGACL   K+    C    R +F  GCPS  G+LAVV +G YII+Y+PGMGT PW++N
Sbjct: 421 YLPGACLDLTKNVRGECRSNRRVWFTEGCPSKIGFLAVVVMGLYIISYAPGMGTVPWVLN 480

Query: 480 SEIYPLRYRGVGGGIAAVSNWTSNLIVSLTFLTLTEALGSAGTFLLFAGFSLLGLVAIYL 539
           SEIYPLRYRG GGGIAAVSNW SNLIVS TFLTL E LG+AGTFLLFAGFSLLGLV IY 
Sbjct: 481 SEIYPLRYRGTGGGIAAVSNWVSNLIVSQTFLTLVETLGAAGTFLLFAGFSLLGLVGIYF 540

Query: 540 LVPETKGLAFEEVEKMLETGFK 561
           LVPETKGL FEEVE++L+ G K
Sbjct: 541 LVPETKGLQFEEVEELLKQGKK 562

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	576
TAIR|locus:2130689	582	INT4 "inositol transporter 4"	0.994	0.984	0.662	1.5e-207
TAIR|locus:2058774	580	INT3 "nositol transporter 3" [	0.994	0.987	0.603	1.4e-190
TAIR|locus:2009832	580	INT2 "inositol transporter 2"	0.979	0.972	0.570	2.1e-173
TAIR|locus:2058193	509	INT1 "inositol transporter 1"	0.559	0.632	0.539	2.9e-118
UNIPROTKB|E1BML6	648	SLC2A13 "Uncharacterized prote	0.927	0.824	0.349	1e-82
UNIPROTKB|Q96QE2	648	SLC2A13 "Proton myo-inositol c	0.925	0.822	0.352	1.3e-82
UNIPROTKB|F1PGX9	652	SLC2A13 "Uncharacterized prote	0.925	0.817	0.349	5.8e-82
RGD|621814	637	Slc2a13 "solute carrier family	0.897	0.811	0.355	1.5e-81
MGI|MGI:2146030	637	Slc2a13 "solute carrier family	0.899	0.813	0.352	3.2e-81
WB|WBGene00010811	604	hmit-1.3 [Caenorhabditis elega	0.907	0.865	0.346	7.3e-75

TAIR|locus:2130689 INT4 "inositol transporter 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 2007 (711.6 bits), Expect = 1.5e-207, P = 1.5e-207
 Identities = 382/577 (66%), Positives = 443/577 (76%)

Query:     1 MVEGGVSKASKTEFTECWNIVWTTPYIMKLALSAGIGGLLFGYDTGVISGALLYIKEDFR 60
             MVEGG++KA KTEFTECW   W TPYIM+LALSAGIGGLLFGYDTGVISGALL+IKEDF 
Sbjct:     1 MVEGGIAKADKTEFTECWRTTWKTPYIMRLALSAGIGGLLFGYDTGVISGALLFIKEDFD 60

Query:    61 DVEKKTWLQELIVSMXXXXXXXXXXXXXWINDRFGRKISLLGADVLFFIGAIIMAIAPQP 120
             +V+KKTWLQ  IVSM             WIND+FGR++S+L ADVLF IGAI+MA AP P
Sbjct:    61 EVDKKTWLQSTIVSMAVAGAIVGAAVGGWINDKFGRRMSILIADVLFLIGAIVMAFAPAP 120

Query:   121 WVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFT 180
             WVII+GRIFVG GVGMASMT+PLYISEASPA+IRGALVS NG LITGGQF +YLINLAF 
Sbjct:   121 WVIIVGRIFVGFGVGMASMTSPLYISEASPARIRGALVSTNGLLITGGQFFSYLINLAFV 180

Query:   181 KAPGTWRWMLGVAGLPAVVQFGLMMMLPESPRWLYRQNKVDEARAILEKIYPADQVEEEV 240
               PGTWRWMLGVAG+PA+VQF LM+ LPESPRWLYR++++ E+RAILE+IYPAD+VE E+
Sbjct:   181 HTPGTWRWMLGVAGVPAIVQFVLMLSLPESPRWLYRKDRIAESRAILERIYPADEVEAEM 240

Query:   241 NLLKQSVENEKAEEGLIGKDMISRLKGAFGNKIVRRGLYAGVTVQVAQQFVGINTVMYYS 300
               LK SVE EKA+E +IG    ++LKGAFGN +VRRGL AG+TVQVAQQFVGINTVMYYS
Sbjct:   241 EALKLSVEAEKADEAIIGDSFSAKLKGAFGNPVVRRGLAAGITVQVAQQFVGINTVMYYS 300

Query:   301 PTIVQFAGFASKSTALALSLVTSGLNALGSIVSMAFVDKYGRRRLMIVSMFGLSSCXXXX 360
             P+IVQFAG+AS  TA+ALSL+TSGLNALGSIVSM FVD+YGRR+LMI+SMFG+ +C    
Sbjct:   301 PSIVQFAGYASNKTAMALSLITSGLNALGSIVSMMFVDRYGRRKLMIISMFGIIACLIIL 360

Query:   361 XXXXXXXXIHAPTVSQIESSHFGGNNTCPAY--ITDGNA--KSWNCMDCLKAKCGFCAHK 416
                     IHAP +   ES  F  N TC AY  +   NA    WNCM CL+++CGFCA  
Sbjct:   361 ATVFSQAAIHAPKIDAFESRTFAPNATCSAYAPLAAENAPPSRWNCMKCLRSECGFCASG 420

Query:   417 GNEYLPGACLIDEKSTDTLCSDEHRTYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAPW 476
                Y PGAC++        CS   RT+F  GCPS FG+LA+VFLG YI+ Y+PGMGT PW
Sbjct:   421 VQPYAPGACVVLSDDMKATCSSRGRTFFKDGCPSKFGFLAIVFLGLYIVVYAPGMGTVPW 480

Query:   477 IVNSEIYPLRYRGVGGGIAAVSNWTSNLIVSLTFLTLTEALGSXXXXXXXXXXXXXXXXX 536
             IVNSEIYPLRYRG+GGGIAAVSNW SNLIVS +FL+LT ALGS                 
Sbjct:   481 IVNSEIYPLRYRGLGGGIAAVSNWVSNLIVSESFLSLTHALGSSGTFLLFAGFSTIGLFF 540

Query:   537 IYLLVPETKGLAFEEVEKMLETGFKPSAFMKKSNKSE 573
             I+LLVPETKGL FEEVEK+LE GFKPS   ++  K +
Sbjct:   541 IWLLVPETKGLQFEEVEKLLEVGFKPSLLRRREKKGK 577

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0006810 "transport" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005366 "myo-inositol:hydrogen symporter activity" evidence=IGI

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2058774 INT3 "nositol transporter 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 1847 (655.2 bits), Expect = 1.4e-190, P = 1.4e-190
 Identities = 349/578 (60%), Positives = 427/578 (73%)

Query:     1 MVEGGVSKASKTEFTECWNIVWTTPYIMKLALSAGIGGLLFGYDTGVISGALLYIKEDFR 60
             MVE   SK+ +   TE W   W TPYIM+LALSAGIGGLLFGY+TGVI+GALLYIKE+F 
Sbjct:     1 MVEEA-SKSEQINITEVWTTTWETPYIMRLALSAGIGGLLFGYNTGVIAGALLYIKEEFG 59

Query:    61 DVEKKTWLQELIVSMXXXXXXXXXXXXXWINDRFGRKISLLGADVLFFIGAIIMAIAPQP 120
             +V+ KTWLQE+IVSM             W ND+FGR++S+L ADVLF +GA++M IA  P
Sbjct:    60 EVDNKTWLQEIIVSMTVAGAIVGAAIGGWYNDKFGRRMSVLIADVLFLLGALVMVIAHAP 119

Query:   121 WVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFT 180
             WVIILGR+ VG GVGMASMT+PLYISE SPA+IRGALVS NG LITGGQFL+YLINLAF 
Sbjct:   120 WVIILGRLLVGFGVGMASMTSPLYISEMSPARIRGALVSTNGLLITGGQFLSYLINLAFV 179

Query:   181 KAPGTWRWMLGVAGLPAVVQFGLMMMLPESPRWLYRQNKVDEARAILEKIYPADQVEEEV 240
               PGTWRWMLGV+ +PA++QF LM+ LPESPRWLYR ++  E+R ILE+IYPA+ VE E+
Sbjct:   180 HTPGTWRWMLGVSAIPAIIQFCLMLTLPESPRWLYRNDRKAESRDILERIYPAEMVEAEI 239

Query:   241 NLLKQSVENEKAEEGLIGKDMISRLKGAFGNKIVRRGLYAGVTVQVAQQFVGINTVMYYS 300
               LK+SV  E A+E +IG     +L+GA  N +VR GL AG+TVQVAQQFVGINTVMYYS
Sbjct:   240 AALKESVRAETADEDIIGHTFSDKLRGALSNPVVRHGLAAGITVQVAQQFVGINTVMYYS 299

Query:   301 PTIVQFAGFASKSTALALSLVTSGLNALGSIVSMAFVDKYGRRRLMIVSMFGLSSCXXXX 360
             PTI+QFAG+AS  TA+AL+L+TSGLNA+GS+VSM FVD+YGRR+LMI+SMFG+ +C    
Sbjct:   300 PTILQFAGYASNKTAMALALITSGLNAVGSVVSMMFVDRYGRRKLMIISMFGIITCLVIL 359

Query:   361 XXXXXXXXIHAPTVSQIESSHFGGNNTCPAYITDGNAKS----WNCMDCLKAKCGFCAHK 416
                      HAP + + +S +F  N TCPA+     ++S    WNCM CL+  CGFC++ 
Sbjct:   360 AAVFNEASNHAPKIDKRDSRNFAKNATCPAFAPFTASRSPPSNWNCMKCLQYDCGFCSNG 419

Query:   417 GNEYLPGACLIDEKSTDTLCSDEHRTYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAPW 476
               EY PGAC++       LC  + RT+F  GCPS FG+LA+VFLG YII Y+PGMGT PW
Sbjct:   420 AQEYAPGACIVQSADMKALCHSKGRTFFKDGCPSKFGYLAIVFLGLYIIVYAPGMGTVPW 479

Query:   477 IVNSEIYPLRYRGVGGGIAAVSNWTSNLIVSLTFLTLTEALGSXXXXXXXXXXXXXXXXX 536
             IVNSEIYPLRYRG+ GGIAAVSNW SNL+VS TFLTLT A+GS                 
Sbjct:   480 IVNSEIYPLRYRGLAGGIAAVSNWMSNLVVSETFLTLTNAVGSSGTFLLFAGSSAVGLFF 539

Query:   537 IYLLVPETKGLAFEEVEKMLETGFKPSAFMKKSNKSEM 574
             I+LLVPETKGL FEEVEK+LE GF+PS     + ++++
Sbjct:   540 IWLLVPETKGLQFEEVEKLLEGGFRPSLLRPTTKENQV 577

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006810 "transport" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2009832 INT2 "inositol transporter 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 1685 (598.2 bits), Expect = 2.1e-173, P = 2.1e-173
 Identities = 329/577 (57%), Positives = 413/577 (71%)

Query:     2 VEGGV--SKASKTEFTECWNIVWTTPYIMKLALSAGIGGLLFGYDTGVISGALLYIKEDF 59
             +EGG+    A ++ F EC+++ W  PY+++LA SAGIGGLLFGYDTGVISGALLYI++DF
Sbjct:     1 MEGGIIHGGADESAFKECFSLTWKNPYVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDF 60

Query:    60 RDVEKKTWLQELIVSMXXXXXXXXXXXXXWINDRFGRKISLLGADVLFFIGAIIMAIAPQ 119
             + V++ TWLQE+IVSM             W ND+ GR+ ++L AD LF +GAIIMA AP 
Sbjct:    61 KSVDRNTWLQEMIVSMAVAGAIVGAAIGGWANDKLGRRSAILMADFLFLLGAIIMAAAPN 120

Query:   120 PWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAF 179
             P ++++GR+FVGLGVGMASMTAPLYISEASPAKIRGALVS NGFLITGGQFL+YLINLAF
Sbjct:   121 PSLLVVGRVFVGLGVGMASMTAPLYISEASPAKIRGALVSTNGFLITGGQFLSYLINLAF 180

Query:   180 TKAPGTWRWMLGVAGLPAVVQFGLMMMLPESPRWLYRQNKVDEARAILEKIYPADQVEEE 239
             T   GTWRWMLG+AG+PA++QF LM  LPESPRWLYR+ + +EA+AIL +IY A+ VE+E
Sbjct:   181 TDVTGTWRWMLGIAGIPALLQFVLMFTLPESPRWLYRKGREEEAKAILRRIYSAEDVEQE 240

Query:   240 VNLLKQSVENEKAEEGLIGK-DMISRLKGAFGNKIVRRGLYAGVTVQVAQQFVGINTVMY 298
             +  LK SVE E  EEG   K +MI   K     K VRRGL AGV +QV QQFVGINTVMY
Sbjct:   241 IRALKDSVETEILEEGSSEKINMIKLCKA----KTVRRGLIAGVGLQVFQQFVGINTVMY 296

Query:   299 YSPTIVQFAGFASKSTALALSLVTSGLNALGSIVSMAFVDKYGRRRLMIVSMFGLSSCXX 358
             YSPTIVQ AGFAS  TAL LSLVT+GLNA GSI+S+ F+D+ GR++L+I+S+FG+     
Sbjct:   297 YSPTIVQLAGFASNRTALLLSLVTAGLNAFGSIISIYFIDRIGRKKLLIISLFGVIISLG 356

Query:   359 XXXXXXXXXXIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAK---CGFCAH 415
                        HAP +S +E+  F  N +CP Y +  N  +W+CM CLKA    CG+C+ 
Sbjct:   357 ILTGVFYEAATHAPAISSLETQRFN-NISCPDYKSAMNTNAWDCMTCLKASSPSCGYCSS 415

Query:   416 K-GNEYLPGACLIDEKSTDTLCSDEHRTYFISGCPSSFGWLAVVFLGAYIITYSPGMGTA 474
               G E+ PGAC I + S   LC +E+R ++  GCPS+FGW A++ LG YII +SPGMGT 
Sbjct:   416 PIGKEH-PGACWISDDSVKDLCHNENRLWYTRGCPSNFGWFALLGLGLYIIFFSPGMGTV 474

Query:   475 PWIVNSEIYPLRYRGVGGGIAAVSNWTSNLIVSLTFLTLTEALGSXXXXXXXXXXXXXXX 534
             PWIVNSEIYPLR+RG+ GGIAA +NW SNLIV+ +FL+LTEA+G+               
Sbjct:   475 PWIVNSEIYPLRFRGICGGIAATANWISNLIVAQSFLSLTEAIGTSWTFLIFGVISVIAL 534

Query:   535 XXIYLLVPETKGLAFEEVEKMLETGFKPSAFMKKSNK 571
               + + VPETKG+  EE+EKMLE       F KK +K
Sbjct:   535 LFVMVCVPETKGMPMEEIEKMLERRSMEFKFWKKKSK 571

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006810 "transport" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005366 "myo-inositol:hydrogen symporter activity" evidence=IMP;IDA

GO:0015798 "myo-inositol transport" evidence=IDA

GO:0023052 "signaling" evidence=TAS

GO:0090406 "pollen tube" evidence=TAS

GO:0006863 "purine nucleobase transport" evidence=RCA

TAIR|locus:2058193 INT1 "inositol transporter 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 908 (324.7 bits), Expect = 2.9e-118, Sum P(2) = 2.9e-118
 Identities = 177/328 (53%), Positives = 236/328 (71%)

Query:    26 YIMKLALSAGIGGLLFGYDTGVISGALLYIKEDFRDVEKKTWLQELIVSMXXXXXXXXXX 85
             YI+ L ++AGIGGLLFGYDTGVISGALLYIK+DF  V++ ++LQE IVSM          
Sbjct:    30 YILGLTVTAGIGGLLFGYDTGVISGALLYIKDDFEVVKQSSFLQETIVSMALVGAMIGAA 89

Query:    86 XXXWINDRFGRKISLLGADVLFFIGAIIMAIAPQPWVIILGRIFVGLGVGMASMTAPLYI 145
                WIND +GRK + L ADV+F  GAI+MA AP P+V+I GR+ VGLGVG+AS+TAP+YI
Sbjct:    90 AGGWINDYYGRKKATLFADVVFAAGAIVMAAAPDPYVLISGRLLVGLGVGVASVTAPVYI 149

Query:   146 SEASPAKIRGALVSANGFLITGGQFLAYLINLAFTKAPGTWRWMLGVAGLPAVVQFGLMM 205
             +EASP+++RG LVS N  +ITGGQFL+YL+N AFT+ PGTWRWMLGV+G+PAV+QF LM+
Sbjct:   150 AEASPSEVRGGLVSTNVLMITGGQFLSYLVNSAFTQVPGTWRWMLGVSGVPAVIQFILML 209

Query:   206 MLPESPRWLYRQNKVDEARAILEKIYPADQVEEEVNLLKQSVENEKAEEGLIGKDMISRL 265
              +PESPRWL+ +N+  EA  +L + Y   ++E+E++ L  + E EK  +  +G       
Sbjct:   210 FMPESPRWLFMKNRKAEAIQVLARTYDISRLEDEIDHLSAAEEEEKQRKRTVG------Y 263

Query:   266 KGAFGNKIVRRGLYAGVTVQVAQQFVGINTVMYYSPTIVQFAGFASKSTALALSLVTSGL 325
                F +K +R    AG  +Q  QQF GINTVMYYSPTIVQ AGF S   AL LSL+ + +
Sbjct:   264 LDVFRSKELRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQMAGFHSNQLALFLSLIVAAM 323

Query:   326 NALGSIVSMAFVDKYGRRRLMIVSMFGL 353
             NA G++V + F+D  GR++L + S+FG+
Sbjct:   324 NAAGTVVGIYFIDHCGRKKLALSSLFGV 351

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006810 "transport" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005773 "vacuole" evidence=IDA

GO:0005366 "myo-inositol:hydrogen symporter activity" evidence=IDA

GO:0009705 "plant-type vacuole membrane" evidence=IDA

GO:0015798 "myo-inositol transport" evidence=IMP

UNIPROTKB|E1BML6 SLC2A13 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 829 (296.9 bits), Expect = 1.0e-82, P = 1.0e-82
 Identities = 199/569 (34%), Positives = 304/569 (53%)

Query:     4 GGVSKASKTEFTECWNIVWTTPYIMKLALSAGIGGLLFGYDTGVISGALLYIKEDFRDVE 63
             G + +A++ +F +      T  ++  +A+ + +GG LFGYDTGV+SGA+L +K   R + 
Sbjct:    62 GDLERAARRQFQQDE----TPAFVYVVAVFSALGGFLFGYDTGVVSGAMLLLK---RQLS 114

Query:    64 KKTWLQELIVSMXXXXXXXXXXXXXWINDRFGRKISLLGADVLFFIGAIIMAIAPQPWVI 123
                  QEL+VS               +N  FGR+ ++L A  LF  G+ ++A A     +
Sbjct:   115 LDAMWQELLVSSTVGAAAVSALAGGALNGVFGRRAAILLASALFTAGSAVLAAANNKETL 174

Query:   124 ILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFT--K 181
             + GR+ VGLG+G+ASMT P+YI+E SP  +RG LV+ N   ITGGQF A +++ AF+  +
Sbjct:   175 LAGRLVVGLGIGIASMTVPVYIAEVSPPNLRGRLVTINTLFITGGQFFASVVDGAFSYLQ 234

Query:   182 APGTWRWMLGVAGLPAVVQFGLMMMLPESPRWLYRQNKVDEARAILEKIYPADQVEEEVN 241
               G WR+MLG+A +PAV+QF   + LPESPRWL ++ +  +AR IL ++     ++EE +
Sbjct:   235 KDG-WRYMLGLAAIPAVIQFFGFLFLPESPRWLIQKGQTQKARRILSQMRGNQTIDEEYD 293

Query:   242 LLKQSVENEKAEEGLIGKDMISRLKGAFGNKIVRRGLYAGVTVQVAQQFVGINTVMYYSP 301
              +K ++E E+ E G  G  +I R+         RR L  G  +Q+ QQ  GINT+MYYS 
Sbjct:   294 SIKNNIEEEEKEVGSAGP-VICRM---LSYPPTRRALIVGCGLQMFQQLSGINTIMYYSA 349

Query:   302 TIVQFAGFASKSTALALSLVTSGLNALGSIVSMAFVDKYGRRRLMIVSMFGLSSCXXXXX 361
             TI+Q +G      A+ L+ +T+  N + ++V +  V+K GRR+L   S+ G +       
Sbjct:   350 TILQMSGVEDDRLAIWLASITAFTNFIFTLVGVWLVEKVGRRKLTFGSLAGTTVALIILA 409

Query:   362 XXXXXXXIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDC-LKAKCGFCAHKGNE- 419
                      +P ++       G N TC  Y       S+ C +C L   CGFC       
Sbjct:   410 LGFLLSAQVSPPITFKPIPPLGQNTTCTRY-------SY-CNECMLDPDCGFCYQMNKST 461

Query:   420 YLPGACL-IDEKSTDTL----CSDE--HRTYFI----SGCPSSFGWLAVVFLGAYIITYS 468
              +  +C+ +++ ST+      C +E   +T  I    + CP+ + W A++ L  Y+I ++
Sbjct:   462 VIDSSCVPVNKASTNEAAWGRCENETKFKTEEIFWAYNFCPTPYSWTALLGLILYLIFFA 521

Query:   469 PGMGTAPWIVNSEIYPLRYRGVGGGIAAVSNWTSNLIVSLTFLTLTEALGSXXXXXXXXX 528
             PGMG  PW VNSEIYPL  R  G   ++  NW  N++VSLTFL   E L           
Sbjct:   522 PGMGPMPWTVNSEIYPLWARSTGNACSSGINWIFNVLVSLTFLHTAEYLTYYGAFFLYAG 581

Query:   529 XXXXXXXXIYLLVPETKGLAFEEVEKMLE 557
                     IY  +PETKG   EE+E + +
Sbjct:   582 FASMGLLFIYGCLPETKGKKLEEIESLFD 610

GO:0016021 "integral to membrane" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

UNIPROTKB|Q96QE2 SLC2A13 "Proton myo-inositol cotransporter" [Homo sapiens (taxid:9606)]

 Score = 828 (296.5 bits), Expect = 1.3e-82, P = 1.3e-82
 Identities = 201/570 (35%), Positives = 309/570 (54%)

Query:     4 GGVSKASKTEFTECWNIVWTTPYIMKLALSAGIGGLLFGYDTGVISGALLYIKEDFRDVE 63
             G + +A++ +F +      T  ++  +A+ + +GG LFGYDTGV+SGA+L +K   R + 
Sbjct:    62 GDLERAARRQFQQDE----TPAFVYVVAVFSALGGFLFGYDTGVVSGAMLLLK---RQLS 114

Query:    64 KKTWLQELIVSMXXXXXXXXXXXXXWINDRFGRKISLLGADVLFFIGAIIMAIAPQPWVI 123
                  QEL+VS               +N  FGR+ ++L A  LF  G+ ++A A     +
Sbjct:   115 LDALWQELLVSSTVGAAAVSALAGGALNGVFGRRAAILLASALFTAGSAVLAAANNKETL 174

Query:   124 ILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFT--K 181
             + GR+ VGLG+G+ASMT P+YI+E SP  +RG LV+ N   ITGGQF A +++ AF+  +
Sbjct:   175 LAGRLVVGLGIGIASMTVPVYIAEVSPPNLRGRLVTINTLFITGGQFFASVVDGAFSYLQ 234

Query:   182 APGTWRWMLGVAGLPAVVQFGLMMMLPESPRWLYRQNKVDEARAILEKIYPADQVEEEVN 241
               G WR+MLG+A +PAV+QF   + LPESPRWL ++ +  +AR IL ++     ++EE +
Sbjct:   235 KDG-WRYMLGLAAVPAVIQFFGFLFLPESPRWLIQKGQTQKARRILSQMRGNQTIDEEYD 293

Query:   242 LLKQSVENEKAEEGLIGKDMISRLKGAFGNKIVRRGLYAGVTVQVAQQFVGINTVMYYSP 301
              +K ++E E+ E G  G  +I R+         RR L  G  +Q+ QQ  GINT+MYYS 
Sbjct:   294 SIKNNIEEEEKEVGSAGP-VICRM---LSYPPTRRALIVGCGLQMFQQLSGINTIMYYSA 349

Query:   302 TIVQFAGFASKSTALALSLVTSGLNALGSIVSMAFVDKYGRRRLMIVSMFGLSSCXXXXX 361
             TI+Q +G      A+ L+ VT+  N + ++V +  V+K GRR+L   S+ G +       
Sbjct:   350 TILQMSGVEDDRLAIWLASVTAFTNFIFTLVGVWLVEKVGRRKLTFGSLAGTTVALIILA 409

Query:   362 XXXXXXXIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDC-LKAKCGFCAHKGNE- 419
                      +P ++    +  G N TC  Y       S+ C +C L   CGFC +K N+ 
Sbjct:   410 LGFVLSAQVSPRITFKPIAPSGQNATCTRY-------SY-CNECMLDPDCGFC-YKMNKS 460

Query:   420 -YLPGACL-IDEKSTDTL----CSDE--HRTYFI----SGCPSSFGWLAVVFLGAYIITY 467
               +  +C+ +++ ST+      C +E   +T  I    + CP+ + W A++ L  Y++ +
Sbjct:   461 TVIDSSCVPVNKASTNEAAWGRCENETKFKTEDIFWAYNFCPTPYSWTALLGLILYLVFF 520

Query:   468 SPGMGTAPWIVNSEIYPLRYRGVGGGIAAVSNWTSNLIVSLTFLTLTEALGSXXXXXXXX 527
             +PGMG  PW VNSEIYPL  R  G   ++  NW  N++VSLTFL   E L          
Sbjct:   521 APGMGPMPWTVNSEIYPLWARSTGNACSSGINWIFNVLVSLTFLHTAEYLTYYGAFFLYA 580

Query:   528 XXXXXXXXXIYLLVPETKGLAFEEVEKMLE 557
                      IY  +PETKG   EE+E + +
Sbjct:   581 GFAAVGLLFIYGCLPETKGKKLEEIESLFD 610

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=TAS

GO:0055085 "transmembrane transport" evidence=TAS

UNIPROTKB|F1PGX9 SLC2A13 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 822 (294.4 bits), Expect = 5.8e-82, P = 5.8e-82
 Identities = 199/570 (34%), Positives = 308/570 (54%)

Query:     4 GGVSKASKTEFTECWNIVWTTPYIMKLALSAGIGGLLFGYDTGVISGALLYIKEDFRDVE 63
             G + +A++ +F +      T  ++   A+ + +GG LFGYDTGV+SGA+L +K   R + 
Sbjct:    66 GDLERAARRQFQQDE----TPAFVYVAAVFSALGGFLFGYDTGVVSGAMLLLK---RQLS 118

Query:    64 KKTWLQELIVSMXXXXXXXXXXXXXWINDRFGRKISLLGADVLFFIGAIIMAIAPQPWVI 123
                  QEL+VS               +N  FGR+ ++L A  LF  G+ ++A A     +
Sbjct:   119 LDALWQELLVSSTVGAAAVSALAGGALNGVFGRRAAILLASALFAAGSAVLAAAGNRETL 178

Query:   124 ILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFT--K 181
             + GR+ VGLG+G+ASMT P+YI+E SP  +RG LV+ N   ITGGQF A +++ AF+  +
Sbjct:   179 LAGRLVVGLGIGIASMTVPVYIAEVSPPNLRGRLVTINTLFITGGQFFASVVDGAFSYLQ 238

Query:   182 APGTWRWMLGVAGLPAVVQFGLMMMLPESPRWLYRQNKVDEARAILEKIYPADQVEEEVN 241
               G WR+MLG+A +PAV+QF   + LPESPRWL ++ +  +AR IL ++     ++EE +
Sbjct:   239 KDG-WRYMLGLAAIPAVIQFFGFLFLPESPRWLIQKGQTQKARRILSQMRGNQTIDEEYD 297

Query:   242 LLKQSVENEKAEEGLIGKDMISRLKGAFGNKIVRRGLYAGVTVQVAQQFVGINTVMYYSP 301
              +K ++E E+ E G  G  +I R+         RR L  G  +Q+ QQ  GINT+MYYS 
Sbjct:   298 SIKNNIEEEEKEVGSAGP-VIYRM---LSYPPTRRALIVGCGLQMFQQLSGINTIMYYSA 353

Query:   302 TIVQFAGFASKSTALALSLVTSGLNALGSIVSMAFVDKYGRRRLMIVSMFGLSSCXXXXX 361
             TI+Q +G      A+ L+ VT+  N + ++V +  V+K GRR+L   S+ G +       
Sbjct:   354 TILQMSGVEDDRLAIWLASVTAFTNFIFTLVGVWLVEKVGRRKLTFGSLAGTTVALLVLA 413

Query:   362 XXXXXXXIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDC-LKAKCGFCAHKGNE- 419
                      +P ++    +  G N +C  Y       S+ C +C L   CGFC +K N+ 
Sbjct:   414 LGFLLSAQVSPRITFKPVAPSGQNTSCTRY-------SY-CNECMLDPDCGFC-YKMNKS 464

Query:   420 -YLPGACL-IDEKSTDTL----CSDE--HRT----YFISGCPSSFGWLAVVFLGAYIITY 467
               +  +C+ +++ ST+      C +E   +T    +  + CP+ + W A++ L  Y++ +
Sbjct:   465 TVIDSSCVPVNKASTNEAAWGRCENETKFKTEEVFWAYNFCPTPYSWTALLGLILYLVFF 524

Query:   468 SPGMGTAPWIVNSEIYPLRYRGVGGGIAAVSNWTSNLIVSLTFLTLTEALGSXXXXXXXX 527
             +PGMG  PW VNSEIYPL  R  G   ++  NW  N++VSLTFL   E L          
Sbjct:   525 APGMGPMPWTVNSEIYPLWARSTGNACSSGINWIFNVLVSLTFLHTAEYLTYYGAFFLYA 584

Query:   528 XXXXXXXXXIYLLVPETKGLAFEEVEKMLE 557
                      IY  +PETKG   EE+E + +
Sbjct:   585 GFAGVGLLFIYGCLPETKGKKLEEIESLFD 614

GO:0016021 "integral to membrane" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

RGD|621814 Slc2a13 "solute carrier family 2 (facilitated glucose transporter), member 13" [Rattus norvegicus (taxid:10116)]

 Score = 818 (293.0 bits), Expect = 1.5e-81, P = 1.5e-81
 Identities = 196/551 (35%), Positives = 296/551 (53%)

Query:    24 TP-YIMKLALSAGIGGLLFGYDTGVISGALLYIKEDFRDVEKKTWLQELIVSMXXXXXXX 82
             TP ++   A  + +GG LFGYDTGV+SGA+L ++   R      W QEL+VS        
Sbjct:    66 TPAFVYAAAAFSALGGFLFGYDTGVVSGAMLLLRRQMR--LGAMW-QELLVSGAVGAAAV 122

Query:    83 XXXXXXWINDRFGRKISLLGADVLFFIGAIIMAIAPQPWVIILGRIFVGLGVGMASMTAP 142
                    +N   GR+ ++L A  L  +G+ ++A A     ++ GR+ VGLG+G+ASMT P
Sbjct:   123 AALAGGALNGALGRRSAILLASALCTVGSAVLAAAANKETLLAGRLVVGLGIGIASMTVP 182

Query:   143 LYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFT--KAPGTWRWMLGVAGLPAVVQ 200
             +YI+E SP  +RG LV+ N   ITGGQF A +++ AF+  +  G WR+MLG+A +PAV+Q
Sbjct:   183 VYIAEVSPPNLRGRLVTINTLFITGGQFFASVVDGAFSYLQKDG-WRYMLGLAAIPAVIQ 241

Query:   201 FGLMMMLPESPRWLYRQNKVDEARAILEKIYPADQVEEEVNLLKQSVENEKAEEGLIGKD 260
             F   + LPESPRWL ++ +  +AR IL ++     ++EE + ++ S+E E+ E    G  
Sbjct:   242 FLGFLFLPESPRWLIQKGQTQKARRILSQMRGNQTIDEEYDSIRNSIEEEEKEASAAGP- 300

Query:   261 MISRLKGAFGNKIVRRGLYAGVTVQVAQQFVGINTVMYYSPTIVQFAGFASKSTALALSL 320
             +I R+         RR L  G  +Q+ QQ  GINT+MYYS TI+Q +G      A+ L+ 
Sbjct:   301 IICRM---LSYPPTRRALAVGCGLQMFQQLSGINTIMYYSATILQMSGVEDDRLAIWLAS 357

Query:   321 VTSGLNALGSIVSMAFVDKYGRRRLMIVSMFGLSSCXXXXXXXXXXXXIHAPTVSQIESS 380
             +T+  N + ++V +  V+K GRR+L   S+ G +                +P V+   ++
Sbjct:   358 ITAFTNFIFTLVGVWLVEKVGRRKLTFGSLAGTTVALTILALGFLLSAQVSPRVTFRPTA 417

Query:   381 HFGGNNTCPAYITDGNAKSWNCMDC-LKAKCGFCAHKGNE--YLPGACL-IDEKSTDTL- 435
               G N TC  Y       S+ C +C L   CGFC +K N    +  +C+ +++ ST+   
Sbjct:   418 PSGQNATCTEY-------SY-CNECMLDPDCGFC-YKINSSAVIDSSCVPVNKASTNEAA 468

Query:   436 ---CSDEHRT------YFISGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEIYPLR 486
                C +E +       +  S CP+ + W A+V L  Y++ ++PGMG  PW VNSEIYPL 
Sbjct:   469 WGRCENETKFKAEDVHWAYSFCPTPYSWTALVGLVLYLVFFAPGMGPMPWTVNSEIYPLW 528

Query:   487 YRGVGGGIAAVSNWTSNLIVSLTFLTLTEALGSXXXXXXXXXXXXXXXXXIYLLVPETKG 546
              R  G   +A  NW  N++VSLTFL   E L                   +Y  +PETKG
Sbjct:   529 ARSTGNACSAGINWIFNVLVSLTFLHTAEYLTYYGAFFLYAGFAAVGLLFVYGCLPETKG 588

Query:   547 LAFEEVEKMLE 557
                EE+E + +
Sbjct:   589 KKLEEIESLFD 599

GO:0016021 "integral to membrane" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

MGI|MGI:2146030 Slc2a13 "solute carrier family 2 (facilitated glucose transporter), member 13" [Mus musculus (taxid:10090)]

 Score = 815 (292.0 bits), Expect = 3.2e-81, P = 3.2e-81
 Identities = 194/550 (35%), Positives = 292/550 (53%)

Query:    24 TP-YIMKLALSAGIGGLLFGYDTGVISGALLYIKEDFRDVEKKTWLQELIVSMXXXXXXX 82
             TP ++   A  + +GG LFGYDTGV+SGA+L ++   R      W QEL+VS        
Sbjct:    66 TPAFVYAAAAFSALGGFLFGYDTGVVSGAMLLLRRQMR--LGAMW-QELLVSGAVGAAAV 122

Query:    83 XXXXXXWINDRFGRKISLLGADVLFFIGAIIMAIAPQPWVIILGRIFVGLGVGMASMTAP 142
                    +N   GR+ ++L A  L  +G+ ++A A     ++ GR+ VGLG+G+ASMT P
Sbjct:   123 AALAGGALNGALGRRSAILLASALCTVGSAVLAAAANKETLLAGRLVVGLGIGIASMTVP 182

Query:   143 LYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFT--KAPGTWRWMLGVAGLPAVVQ 200
             +YI+E SP  +RG LV+ N   ITGGQF A +++ AF+  +  G WR+MLG+A +PAV+Q
Sbjct:   183 VYIAEVSPPNLRGRLVTINTLFITGGQFFASVVDGAFSYLQKDG-WRYMLGLAAIPAVIQ 241

Query:   201 FGLMMMLPESPRWLYRQNKVDEARAILEKIYPADQVEEEVNLLKQSVENEKAEEGLIGKD 260
             F   + LPESPRWL ++ +  +AR IL ++     ++EE + ++ S+E E+ E    G  
Sbjct:   242 FLGFLFLPESPRWLIQKGQTQKARRILSQMRGNQTIDEEYDSIRNSIEEEEKEATAAGP- 300

Query:   261 MISRLKGAFGNKIVRRGLYAGVTVQVAQQFVGINTVMYYSPTIVQFAGFASKSTALALSL 320
             +I R+         RR L  G  +Q+ QQ  GINT+MYYS TI+Q +G      A+ L+ 
Sbjct:   301 IICRM---LSYPPTRRALVVGCGLQMFQQLSGINTIMYYSATILQMSGVEDDRLAIWLAS 357

Query:   321 VTSGLNALGSIVSMAFVDKYGRRRLMIVSMFGLSSCXXXXXXXXXXXXIHAPTVSQIESS 380
             +T+  N + ++V +  V+K GRR+L   S+ G +                +P V+   ++
Sbjct:   358 ITAFTNFIFTLVGVWLVEKVGRRKLTFGSLAGTTVALIILALGFLLSAQVSPRVTFRPTT 417

Query:   381 HFGGNNTCPAYITDGNAKSWNCMDC-LKAKCGFCAH-KGNEYLPGACLIDEKSTDT---- 434
                 N TC  Y       S+ C +C L   CGFC    G+  +  +C+   K++ T    
Sbjct:   418 PSDQNTTCTGY-------SY-CNECMLDPDCGFCYKINGSAVIDSSCVPVNKASTTEAAW 469

Query:   435 -LCSDEHRT------YFISGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEIYPLRY 487
               C +E +       +  S CP+ + W A+V L  Y++ ++PGMG  PW VNSEIYPL  
Sbjct:   470 GRCDNETKFKAEGAHWAYSFCPTPYSWTALVGLVLYLVFFAPGMGPMPWTVNSEIYPLWA 529

Query:   488 RGVGGGIAAVSNWTSNLIVSLTFLTLTEALGSXXXXXXXXXXXXXXXXXIYLLVPETKGL 547
             R  G   +A  NW  N++VSLTFL   E L                   +Y  +PETKG 
Sbjct:   530 RSTGNACSAGINWIFNVLVSLTFLHTAEYLTYYGAFFLYAGFAAVGLLFVYGCLPETKGK 589

Query:   548 AFEEVEKMLE 557
               EE+E + +
Sbjct:   590 KLEEIESLFD 599

GO:0005215 "transporter activity" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0008643 "carbohydrate transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

WB|WBGene00010811 hmit-1.3 [Caenorhabditis elegans (taxid:6239)]

 Score = 755 (270.8 bits), Expect = 7.3e-75, P = 7.3e-75
 Identities = 193/557 (34%), Positives = 288/557 (51%)

Query:    26 YIMKLALSAGIGGLLFGYDTGVISGALLYIKE--DFRDVEKKTWLQELIVSMXXXXXXXX 83
             ++  LA SA IGG LFGYDTG++S A+LY+      + ++   W QE+IVS+        
Sbjct:    27 FVYMLAFSAVIGGFLFGYDTGIVSAAMLYVPNASGIKPLDS-VW-QEIIVSITPGVAAIG 84

Query:    84 XXXXXWINDRFGRKISLLGADVLFFIGAIIMAIAPQPWVIILGRIFVGLGVGMASMTAPL 143
                    +D  GRK  ++GA V F IGAII A A    ++++GRI +GL +G ASM  P+
Sbjct:    85 SLCSGPGSDFLGRKKIIIGASVTFTIGAIICAAAWTKIILLIGRILLGLAIGFASMIVPI 144

Query:   144 YISEASPAKIRGALVSANGFLITGGQFLAYLINLAFTKA-PGT--WRWMLGVAGLPAVVQ 200
             Y+SEASP+ IRG LV+    +IT G  +A +I  AF+   P    WR M   A +PA++Q
Sbjct:   145 YVSEASPSHIRGKLVTGFQLMITVGLVIANIIGGAFSYVDPDQVGWRLMFAFAAVPAIIQ 204

Query:   201 FGLMMMLPESPRWLYRQNKVDEARAILEKIYPA--DQVEEEVNLLKQSVENE---KAEEG 255
             F   + LPESPRWLY   +  EAR +L +IY    + V+ E+N +  S E E   KAE  
Sbjct:   205 FVCFLFLPESPRWLYEHGRTVEAREVLTRIYNGHTEWVDYEINEISFSYEEELRAKAEHA 264

Query:   256 LIGKDMISRLKGAFGNKIVRRGLYAGVTVQVAQQFVGINTVMYYSPTIVQFAGFASKSTA 315
               G  +I  LK       VR+ +  G  +Q+ QQ  GINTVMYY+  I++ AG     T 
Sbjct:   265 GNGPTIIRILKTPH----VRKAMIIGSLLQMFQQLSGINTVMYYTGNIIRSAGVKDNHTT 320

Query:   316 LALSLVTSGLNALGSIVSMAFVDKYGRRRLMIVSMFGLSSCXXXXXXXXXXXXIHAPTVS 375
             + +S+ TS +N LG+ + +A V++ GRR L++VSM G+               I+  ++ 
Sbjct:   321 IWISVGTSAINFLGTFIPIALVERVGRRVLLLVSMIGV--ILFLIAMGVSFLLINNDSLR 378

Query:   376 QIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAK-CGFCAHKGNEYLPGACLI--DEKST 432
               +  ++  N            K  NC  C+  + CGFC  K  +   G CL    + S+
Sbjct:   379 TFDQQNYTLNYNPSVKHAAKCLKYSNCDFCVTDENCGFCESKVAK--KGYCLPFPSDDSS 436

Query:   433 DT----LCSDEHRT-------YFISGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSE 481
             D     +C   + T       +  + C + F  L ++ +  Y++++S G    PW++N+E
Sbjct:   437 DYSATGICEFSNLTNNGTDFEWEDTYCHTKFTVLPIIIMVFYLLSFSAGYAPLPWVLNAE 496

Query:   482 IYPLRYRGVGGGIAAVSNWTSNLIVSLTFLTLTEALGSXXXXXXXXXXXXXXXXXIYLLV 541
              YPL  R     ++   NW  NLIVSLTFL+L++A                    ++  V
Sbjct:   497 FYPLWARSTAVSVSTACNWIFNLIVSLTFLSLSQAATKYGTFFIYCGCTMVALVFVFFFV 556

Query:   542 PETKGLAFEEVEKMLET 558
             PETKG + +EVE +  T
Sbjct:   557 PETKGYSIDEVEMLFMT 573

GO:0016020 "membrane" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0005215 "transporter activity" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0016324 "apical plasma membrane" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q3UHK1	MYCT_MOUSE	No assigned EC number	0.3825	0.9027	0.8163	yes	no
Q96QE2	MYCT_HUMAN	No assigned EC number	0.3767	0.9253	0.8225	yes	no
Q921A2	MYCT_RAT	No assigned EC number	0.3862	0.8940	0.8084	yes	no
O23492	INT4_ARATH	No assigned EC number	0.7105	0.9947	0.9845	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_fgenesh4_pm.C_LG_VI0047 hypothetical protein (579 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	576
TIGR00879	481	TIGR00879, SP, MFS transporter, sugar porter (SP)	3e-81
pfam00083	449	pfam00083, Sugar_tr, Sugar (and other) transporter	3e-81
PRK10077	479	PRK10077, xylE, D-xylose transporter XylE; Provisi	2e-62
TIGR00879	481	TIGR00879, SP, MFS transporter, sugar porter (SP)	9e-23
TIGR00895	398	TIGR00895, 2A0115, benzoate transport	2e-22
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	2e-22
pfam00083	449	pfam00083, Sugar_tr, Sugar (and other) transporter	3e-20
TIGR00898	505	TIGR00898, 2A0119, cation transport protein	3e-18
pfam07690	346	pfam07690, MFS_1, Major Facilitator Superfamily	2e-16
PRK03893	496	PRK03893, PRK03893, putative sialic acid transport	1e-15
PRK11551	406	PRK11551, PRK11551, putative 3-hydroxyphenylpropio	2e-10
TIGR00891	405	TIGR00891, 2A0112, putative sialic acid transporte	7e-10
TIGR00880	141	TIGR00880, 2_A_01_02, Multidrug resistance protein	2e-09
PRK12307	426	PRK12307, PRK12307, putative sialic acid transport	7e-09
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	1e-08
TIGR00883	394	TIGR00883, 2A0106, metabolite-proton symporter	1e-08
TIGR01299	742	TIGR01299, synapt_SV2, synaptic vesicle protein SV	2e-07
PRK10077	479	PRK10077, xylE, D-xylose transporter XylE; Provisi	7e-07
PRK10406	432	PRK10406, PRK10406, alpha-ketoglutarate transporte	7e-07
COG2814	394	COG2814, AraJ, Arabinose efflux permease [Carbohyd	3e-06
TIGR00887	502	TIGR00887, 2A0109, phosphate:H+ symporter	3e-06
pfam07690	346	pfam07690, MFS_1, Major Facilitator Superfamily	8e-06
TIGR00893	399	TIGR00893, 2A0114, D-galactonate transporter	1e-05
TIGR00887	502	TIGR00887, 2A0109, phosphate:H+ symporter	5e-05
pfam13347	425	pfam13347, MFS_2, MFS/sugar transport protein	5e-05
COG0477	338	COG0477, ProP, Permeases of the major facilitator	6e-05
PRK08633	1146	PRK08633, PRK08633, 2-acyl-glycerophospho-ethanola	2e-04
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	4e-04
COG2807	395	COG2807, CynX, Cyanate permease [Inorganic ion tra	4e-04
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	7e-04
TIGR00900	365	TIGR00900, 2A0121, H+ Antiporter protein	0.001
PRK11646	400	PRK11646, PRK11646, multidrug resistance protein M	0.001

>gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family

 Score =  262 bits (672), Expect = 3e-81
 Identities = 131/353 (37%), Positives = 199/353 (56%), Gaps = 13/353 (3%)

Query: 23  TTPYIMKLALSAGIGGLLFGYDTGVISGALLYIKEDFRDVEKK-----TWLQELIVSMAV 77
           T   +  L+L A IGGL+FGYDTGVI GAL     +F+          + L  L+VS+ +
Sbjct: 22  TYWKVALLSLIAAIGGLMFGYDTGVIGGALALPAFEFKFTSANSDSYSSSLWGLVVSIFL 81

Query: 78  AGAIFGAGFGGWINDRFGRKISLLGADVLFFIGAIIM---AIAPQPWVIILGRIFVGLGV 134
            G   GA F GW++DRFGRK SLL   +LF IGAI+M   A A    ++I+GR+ +G+GV
Sbjct: 82  VGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGV 141

Query: 135 GMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFTKAPGT--WRWMLGV 192
           G+AS   P+Y+SE +P  +RGAL S     IT G  +AY           T  WR  LG+
Sbjct: 142 GIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRIPLGL 201

Query: 193 AGLPAVVQFGLMMMLPESPRWLYRQNKVDEARAILEKIYPADQVEEEVNLLKQSVENEKA 252
             +PA + F  +  LPESPRWL  + +V+EAR  L ++      ++E+    + ++ +++
Sbjct: 202 QLIPAGLLFLGLFFLPESPRWLVGKGRVEEARKSLARLRGTSGEDKELLDELELIDIKRS 261

Query: 253 EEGLIGKDMISRLKGAFGNKIVRRGLYAGVTVQVAQQFVGINTVMYYSPTIVQFAGFASK 312
            E    +     L  +     +RR L+ GV +Q  QQF GIN +MYYSPTI + AG ++ 
Sbjct: 262 IEKRSVQPSWGSLFSSTRR--IRRRLFLGVVLQWFQQFTGINAIMYYSPTIFENAGVST- 318

Query: 313 STALALSLVTSGLNALGSIVSMAFVDKYGRRRLMIVSMFGLSSCLVALAVVFF 365
             A  +S++   +N   + V++  VD++GRR L+++   G++ CL  L ++  
Sbjct: 319 DHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGA 371

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 481

>gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter

 Score =  261 bits (669), Expect = 3e-81
 Identities = 137/352 (38%), Positives = 196/352 (55%), Gaps = 30/352 (8%)

Query: 30  LALSAGIGGLLFGYDTGVISGALLYIKEDFR--------DVEKKTWLQELIVSMAVAGAI 81
           LAL A +GG LFGYDTGVI   L  IK   R             T L  LIVS+   G +
Sbjct: 1   LALVAALGGFLFGYDTGVIGAFLTLIKFFKRFGALTSIGACAASTVLSGLIVSIFSVGCL 60

Query: 82  FGAGFGGWINDRFGRKISLLGADVLFFIGAIIMAIAPQ--PWVIILGRIFVGLGVGMASM 139
            G+ F G + DRFGRK SLL  +VLF IGA++   A     +++I+GR+ VGLGVG  S+
Sbjct: 61  IGSLFAGKLGDRFGRKKSLLIGNVLFVIGALLQGFAKGKSFYMLIVGRVIVGLGVGGISV 120

Query: 140 TAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAF--TKAPGTWRWMLGVAGLPA 197
             P+YISE +P K+RGAL S     IT G  +A +I L          WR  LG+  +PA
Sbjct: 121 LVPMYISEIAPKKLRGALGSLYQLGITFGILVAAIIGLGLNKYSNSDGWRIPLGLQFVPA 180

Query: 198 VVQFGLMMMLPESPRWLYRQNKVDEARAILEKIYPADQV----EEEVNLLKQSVENEKAE 253
           ++    ++ LPESPRWL  + K++EARA+L K+     V    +EE + L++SVE EKA 
Sbjct: 181 ILLLIGLLFLPESPRWLVLKGKLEEARAVLAKLRGVSDVDQEIQEEKDSLERSVEAEKAS 240

Query: 254 EGLIGKDMISRLKGAFGNKIVRRGLYAGVTVQVAQQFVGINTVMYYSPTIVQFAGFASKS 313
              +           F  K VR+ L  GV +Q+ QQ  GIN + YYSPTI +  G    S
Sbjct: 241 WLEL-----------FRGKTVRQRLLMGVMLQIFQQLTGINAIFYYSPTIFETLGL---S 286

Query: 314 TALALSLVTSGLNALGSIVSMAFVDKYGRRRLMIVSMFGLSSCLVALAVVFF 365
            +L ++++   +N + + +++  VD++GRR L+++   G++ C + L V   
Sbjct: 287 DSLLVTIIVGVVNFVFTFIAIFLVDRFGRRPLLLLGAAGMAICFLVLGVALL 338

Length = 449

>gnl|CDD|182225 PRK10077, xylE, D-xylose transporter XylE; Provisional

 Score =  213 bits (543), Expect = 2e-62
 Identities = 122/370 (32%), Positives = 188/370 (50%), Gaps = 42/370 (11%)

Query: 26  YIMKLALSAGIGGLLFGYDTGVISGAL-----LYIKEDFRDVEKKTWLQELIVSMAVAGA 80
           YI  + L A +GGLLFGYDT VISG +     +++            L    V+ A+ G 
Sbjct: 9   YIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGC 68

Query: 81  IFGAGFGGWINDRFGRKISLLGADVLFFIGAI--------IMAIAPQPWVIILG----RI 128
           I G   GG+ ++RFGR+ SL  A VLFFI A+          +I P     +      RI
Sbjct: 69  IIGGALGGYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRI 128

Query: 129 FVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFTKAPGT--- 185
             G+GVG+ASM +P+YI+E +PA IRG LVS N F I  GQ + Y +N    ++      
Sbjct: 129 IGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWL 188

Query: 186 ----WRWMLGVAGLPAVVQFGLMMMLPESPRWLYRQNKVDEARAILEKIYPADQVEEEVN 241
               WR+M     +PA++   L+  +PE+PR+L  + K ++A  IL KI       + + 
Sbjct: 189 NTDGWRYMFASEAIPALLFLMLLYFVPETPRYLMSRGKQEQAEGILRKIMGNTLATQALQ 248

Query: 242 LLKQSVE--NEKAEEGLIGKDMISRLKGAFGNKIVRRGLYAGVTVQVAQQFVGINTVMYY 299
            +K S++   +   + L            FG  ++      GV + V QQFVGIN V+YY
Sbjct: 249 EIKHSLDHGRKTGGKLL-----------MFGVGVI----VIGVMLSVFQQFVGINVVLYY 293

Query: 300 SPTIVQFAGFASKSTALALSLVTSGLNALGSIVSMAFVDKYGRRRLMIVSMFGLSSCLVA 359
           +P I +  G AS   AL  +++   +N   +++++  VDK+GR+ L I+   G++  + +
Sbjct: 294 APEIFKTLG-ASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFS 352

Query: 360 LAVVFFQAAI 369
           L   F+  A 
Sbjct: 353 LGTAFYTQAP 362

Length = 479

>gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family

 Score =  101 bits (253), Expect = 9e-23
 Identities = 45/109 (41%), Positives = 68/109 (62%)

Query: 444 FISGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEIYPLRYRGVGGGIAAVSNWTSN 503
           F++G   S G +A+VF+  +I  ++ G G  PW++ SEI+PL  R  G  IA  +NW +N
Sbjct: 373 FVTGSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLAN 432

Query: 504 LIVSLTFLTLTEALGSAGTFLLFAGFSLLGLVAIYLLVPETKGLAFEEV 552
            IV   F T+ E++G  G F+ F G ++LGL+ +Y  +PETKG   EE+
Sbjct: 433 FIVGFLFPTMLESIGVGGVFIFFGGLNVLGLIFVYFFLPETKGRTLEEI 481

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 481

>gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport

 Score = 99.4 bits (248), Expect = 2e-22
 Identities = 82/334 (24%), Positives = 139/334 (41%), Gaps = 26/334 (7%)

Query: 24  TPYIMKLALSAGIGGLLFGYDTGVISGALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFG 83
           + Y  +  + + +  L+ GYD   +  A   I  ++  ++        + S  + G  FG
Sbjct: 12  SRYQWRAIILSFLIMLMDGYDLAAMGFAAPAISAEW-GLDPVQL--GFLFSAGLIGMAFG 68

Query: 84  AGFGGWINDRFGRKISLLGADVLFFIGAIIMAIAPQPWVIILGRIFVGLGVGMASMTAPL 143
           A F G + DR GR+  LL + +LF +  ++ A+A     +++ R   GLG+G        
Sbjct: 69  ALFFGPLADRIGRRRVLLWSILLFSVFTLLCALATNVTQLLILRFLAGLGLGGLMPNLNA 128

Query: 144 YISEASPAKIRGALVS--ANGFLI--TGGQFLAYLINLAFTKAPGTWRWMLGVAGL-PAV 198
            +SE +P + RG  V     G+ I    G FLA  +   F      WR +  V G+ P +
Sbjct: 129 LVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVF-----GWRSLFYVGGIAPLL 183

Query: 199 VQFGLMMMLPESPRWLYRQNKVDEARAILEKIYPADQVEEEVNLLKQSVENEKAEEGLIG 258
           +   LM  LPES  +L  + + +  R I+  I P  Q E +  L +Q             
Sbjct: 184 LLLLLMRFLPESIDFLVSK-RPETVRRIVNAIAPQMQAEAQSALPEQKATQGTKR----- 237

Query: 259 KDMISRLKGAFGNKIVRRGLYAGVTVQVAQQFVGINTVMYYSPTIVQFAGFASKSTALAL 318
               S  K  F  K  R  +   + +      VG+  +  + P ++   GF+    A   
Sbjct: 238 ----SVFKALFQGKTARITV--LLWLLYFMLLVGVYFLTNWLPKLMVELGFSLSLAATGG 291

Query: 319 SLVTSGLNALGSIVSMAFVDKYGRRRLMIVSMFG 352
           +L   G   +GSI+     D+ G R   ++ + G
Sbjct: 292 ALFNFG-GVIGSIIFGWLADRLGPRVTALLLLLG 324

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 398

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 98.5 bits (246), Expect = 2e-22
 Identities = 53/177 (29%), Positives = 85/177 (48%), Gaps = 4/177 (2%)

Query: 32  LSAGIGGLLFGYDTGVISGALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWIN 91
           L   +G  L G D G++S AL  + ED            LIVS    G   G+   G+++
Sbjct: 2   LLLFLGFFLSGLDRGLLSPALPLLAEDLGLS---ASQAGLIVSAFSLGYALGSLLAGYLS 58

Query: 92  DRFGRKISLLGADVLFFIGAIIMAIAPQPWVIILGRIFVGLGVGMASMTAPLYISEASPA 151
           DRFGR+  LL   +LF +G++++A A   W++++GR  +GLG G     A   I+E  P 
Sbjct: 59  DRFGRRRVLLLGLLLFALGSLLLAFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPP 118

Query: 152 KIRGALVSANGFLITGGQFLAYLINLAFTKAPGTWRWMLGVAGLPAVVQFGLMMMLP 208
           K RG  +         G  L  L+     ++ G WRW+  +  +  ++   L++ L 
Sbjct: 119 KERGRALGLFSAGFGLGALLGPLLGGLLAESLG-WRWLFLILAILGLLLALLLLFLL 174

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter

 Score = 93.5 bits (233), Expect = 3e-20
 Identities = 37/108 (34%), Positives = 63/108 (58%), Gaps = 1/108 (0%)

Query: 449 PSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEIYPLRYRGVGGGIAAVSNWTSNLIVSL 508
               G +A+VF+  +I  ++ G G  PW++ SE++PL  R     IA  +NW +N ++  
Sbjct: 343 SKGAGIVAIVFILLFIAFFALGWGPVPWVIVSELFPLGVRPKAMAIATAANWLANFLIGF 402

Query: 509 TFLTLTEALGSAGTFLLFAGFSLLGLVAIYLLVPETKGLAFEEVEKML 556
            F  +T A+G    FL+FAG  +L ++ ++  VPETKG   EE++++ 
Sbjct: 403 LFPIITGAIG-GYVFLVFAGLLVLFILFVFFFVPETKGRTLEEIDELF 449

Length = 449

>gnl|CDD|233176 TIGR00898, 2A0119, cation transport protein

 Score = 87.8 bits (218), Expect = 3e-18
 Identities = 56/191 (29%), Positives = 94/191 (49%), Gaps = 12/191 (6%)

Query: 67  WLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFIGAIIMAIAPQPWVIILG 126
           W  +L  S    G + G+   G+++DRFGRK  LL + ++  +  ++ A +P   V ++ 
Sbjct: 127 WKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVF 186

Query: 127 RIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFL----AYLINLAFTKA 182
           R+ VG+G+G   + A +  +E  P K R  + +      + G  L    AY I       
Sbjct: 187 RLLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFI------- 239

Query: 183 PGTWRWMLGVAGLPAVVQFGLMMMLPESPRWLYRQNKVDEARAILEKIYPADQVEEEVNL 242
           P  WRW+     LP  + F L   +PESPRWL  Q +++EA  IL++I   +  +    +
Sbjct: 240 PD-WRWLQLAVSLPTFLFFLLSWFVPESPRWLISQGRIEEALKILQRIAKINGKKLPAEV 298

Query: 243 LKQSVENEKAE 253
           L  S+E + + 
Sbjct: 299 LSLSLEKDLSS 309

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 505

>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily

 Score = 80.5 bits (199), Expect = 2e-16
 Identities = 69/342 (20%), Positives = 125/342 (36%), Gaps = 47/342 (13%)

Query: 36  IGGLLFGYDTGVISGAL-LYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRF 94
           +   L G    ++  AL LY+ ED            L+++    G        G ++DRF
Sbjct: 3   LAAFLAGLGRSLLGPALPLYLAEDLGISPT---EIGLLLTAFSLGYALAQPLAGRLSDRF 59

Query: 95  GRKISLLGADVLFFIGAIIMAIAPQPWVIILGRIFVGLGVGMASMTAPLYISEASPAKIR 154
           GR+  LL   +LF +G +++  A   W++++ R+  GLG G     A   I++  P + R
Sbjct: 60  GRRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGGGALFPAAAALIADWFPPEER 119

Query: 155 GALVSANGFLITGGQFLAYLINLAFTKAPGTWRWMLGVAGLPAVVQFGLMMM-LPESPRW 213
           G  +         G  L  L+        G WR    +  + A++   L  + LP  P  
Sbjct: 120 GRALGLLSAGFGLGAALGPLLGGLLASLFG-WRAAFLILAILALLAAVLAALLLPRPPPE 178

Query: 214 LYRQNKVDEARAILEKIYPADQVEEEVNLLKQSVENEKAEEGLIGKDMISRLKGAFGNKI 273
             R    +EA A L   +                                        K+
Sbjct: 179 SKRPKPAEEAPAPLVPAW----------------------------------------KL 198

Query: 274 VRRGLYAGVTVQVAQQFVGINTVMYYSPTIVQFAGFASKSTALALSLVTSGLNALGSIVS 333
           + R     + + +         ++ Y P   +  G ++    L L L    L A+G ++ 
Sbjct: 199 LLRDPVLWLLLALLLFGFAFFALLTYLPLYQEVLGLSALLAGLLLGL-AGLLGAIGRLLL 257

Query: 334 MAFVDKYGRRRLMIVSMFGLSSCLVALAVVFFQAAIHAPTVS 375
               D+ GRRR +++++  L    + LA++    +     V+
Sbjct: 258 GRLSDRLGRRRRLLLALLLLILAALGLALLSLTESSLWLLVA 299

Length = 346

>gnl|CDD|179668 PRK03893, PRK03893, putative sialic acid transporter; Provisional

 Score = 79.4 bits (196), Expect = 1e-15
 Identities = 52/208 (25%), Positives = 100/208 (48%), Gaps = 14/208 (6%)

Query: 29  KLALSAGIGGLLFGYDTGVISGALLYIKEDF--RDVEKKTWLQELIVSMAVAGAIFGAGF 86
           K   +A +G LL G+D  +I+  L  ++ +F    V+  + +    +S    G + GA  
Sbjct: 20  KAFSAAWLGYLLDGFDFVLITLVLTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGA-- 77

Query: 87  GGWINDRFGRKISLLGADVLFFIGAIIMAIAPQPWVIILGRIFVGLGVGMASMTAPLYIS 146
              + DR+GR+++++ + VLF +G +    AP  W + + R+ +G+G+     ++  Y+ 
Sbjct: 78  ---MGDRYGRRLAMVISIVLFSVGTLACGFAPGYWTLFIARLVIGMGMAGEYGSSATYVI 134

Query: 147 EASPAKIRGALVSANGFLITG---GQFLAYLINLAFTKAPGTWRWMLGVAGLPAVVQFGL 203
           E+ P  +R     A+GFLI+G   G  +A  +  +       WR +  +  LP +    L
Sbjct: 135 ESWPKHLRN---KASGFLISGFSIGAVVAAQVY-SLVVPVWGWRALFFIGILPIIFALWL 190

Query: 204 MMMLPESPRWLYRQNKVDEARAILEKIY 231
              LPE+  W  +       R +++ +Y
Sbjct: 191 RKNLPEAEDWKEKHAGKAPVRTMVDILY 218

Length = 496

>gnl|CDD|236927 PRK11551, PRK11551, putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

 Score = 62.3 bits (152), Expect = 2e-10
 Identities = 46/162 (28%), Positives = 72/162 (44%), Gaps = 8/162 (4%)

Query: 71  LIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFIGAIIMAIAPQPWVIILGRIFV 130
              S  + G + GA  GG + DR GRK  L+ +  LF + ++  A A     +++ R+  
Sbjct: 54  WAFSAGILGLLPGALLGGRLADRIGRKRILIVSVALFGLFSLATAQAWDFPSLLVARLLT 113

Query: 131 GLGVGMASMTAPLYI---SEASPAKIRGALVSANGFLITGGQFLAYLINLAFTKAPGTWR 187
           G+G+G A    P  I   SEA   ++RG  VS     +  G  LA +I +        WR
Sbjct: 114 GVGLGGA---LPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGV-LAAGDAAWR 169

Query: 188 WMLGVAGL-PAVVQFGLMMMLPESPRWLYRQNKVDEARAILE 228
            +  V G+ P ++   LM  LPES  +        +   +L 
Sbjct: 170 HIFYVGGVGPLLLVPLLMRWLPESRAFAQAAGAGKQRAPVLR 211

Length = 406

>gnl|CDD|233172 TIGR00891, 2A0112, putative sialic acid transporter

 Score = 61.1 bits (148), Expect = 7e-10
 Identities = 54/229 (23%), Positives = 98/229 (42%), Gaps = 18/229 (7%)

Query: 31  ALSAG-IGGLLFGYDTGVISGALLYIKEDF-RDVEKKTWLQELIVSMAVAGAIFGAGFGG 88
           A SA  +G LL  +D  +++  L  +  +F         L    +     GA+    FG 
Sbjct: 13  AFSAAWLGWLLDAFDFFLVALVLAEVAGEFGLTTVDAASLISAALISRWFGALM---FGL 69

Query: 89  WINDRFGRKISLLGADVLFFIGAIIMAIAPQPWVIILGRIFVGLGVGMASMTAPLYISEA 148
           W  DR+GR++ ++ + VLF  G +    AP    + + R+ +G+G+G    ++  Y+ E+
Sbjct: 70  W-GDRYGRRLPMVTSIVLFSAGTLACGFAPGYITMFIARLVIGIGMGGEYGSSAAYVIES 128

Query: 149 SPAKIRGALVSANGFLITG---GQFLAYLINLAFTKAPG-TWRWMLGVAGLPAVVQFGLM 204
            P  +R      +G LI+G   G  +A  +        G  WR +  ++ LP +    L 
Sbjct: 129 WPKHLRNKA---SGLLISGYAVGAVVAAQVYSLVVPVWGDGWRALFFISILPIIFALWLR 185

Query: 205 MMLPESPRWLYRQNKVDEARAILEKIY-----PADQVEEEVNLLKQSVE 248
             +PE+  W  +       R +++ +Y      A+ V      + QS  
Sbjct: 186 KNIPEAEDWKEKHAGKALVRTMVDILYGGEHRIANIVMTLAAAMVQSAG 234

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 405

>gnl|CDD|233166 TIGR00880, 2_A_01_02, Multidrug resistance protein

 Score = 56.1 bits (136), Expect = 2e-09
 Identities = 33/142 (23%), Positives = 57/142 (40%), Gaps = 7/142 (4%)

Query: 71  LIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFIGAIIMAIAPQPWVIILGRIFV 130
           L+++    G +  +   G + DRFGRK  LL    +F +   + A++    V+I+ R   
Sbjct: 2   LLLAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQ 61

Query: 131 GLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFTKAPG---TWR 187
           G G   A +     I++  P + RG  +     L++ G  L  L+             WR
Sbjct: 62  GFGAAFALVAGAALIADIYPPEERGVALG----LMSAGIALGPLLGPPLGGVLAQFLGWR 117

Query: 188 WMLGVAGLPAVVQFGLMMMLPE 209
                  + A+  F L+  L  
Sbjct: 118 APFLFLAILALAAFILLAFLLP 139

Length = 141

>gnl|CDD|237051 PRK12307, PRK12307, putative sialic acid transporter; Provisional

 Score = 57.6 bits (139), Expect = 7e-09
 Identities = 52/195 (26%), Positives = 85/195 (43%), Gaps = 14/195 (7%)

Query: 24  TPYIMKLALSAGIGGLLFGYDTGVISGALLYIKEDF--RDVEKKTWLQELIVSMAVAGAI 81
           T        SA +G +  G+D  +I   +  IK D    D+E        + + A  G  
Sbjct: 13  TRPQKNALFSAWLGYVFDGFDFMLIFYIMYLIKADLGLTDMEGA-----FLATAAFIGRP 67

Query: 82  FGAGFGGWINDRFGRKISLLGADVLFFIGAIIMAIAPQPWVIILGRIFVGLGVGMASMTA 141
           FG    G + D+FGRK  ++ + V + +G  +  +A    ++ L R  VG+G+      A
Sbjct: 68  FGGALFGLLADKFGRKPLMMWSIVAYSVGTGLSGLASGVIMLTLSRFIVGMGMAGEYACA 127

Query: 142 PLYISEASPAKIRGALVSANGFLITG---GQFLAYLINLAFTKAPGTWRWMLGVAGLPAV 198
             Y  E+ P  ++     A+ FL++G   G  +A     +F +A G WR    V  LP +
Sbjct: 128 STYAVESWPKHLKS---KASAFLVSGFGIGNIIAAYFMPSFAEAYG-WRAAFFVGLLPVL 183

Query: 199 VQFGLMMMLPESPRW 213
           +   +    PES  W
Sbjct: 184 LVIYIRARAPESKEW 198

Length = 426

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 56.9 bits (138), Expect = 1e-08
 Identities = 36/139 (25%), Positives = 68/139 (48%), Gaps = 2/139 (1%)

Query: 71  LIVSMAVAGAIFGAGFGGWINDRFGRK-ISLLGADVLFFIGAIIMAIAPQPWVIILGRIF 129
           L++S+   G I GA  GG ++DR GR+ + LL   +L  +G +++A+AP   ++++  + 
Sbjct: 215 LLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALLLVALLL 274

Query: 130 VGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFTKAPGTWRWM 189
           +G G+G A        SE +P + RG          + G  L  L+        G +  +
Sbjct: 275 LGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGG-YGGV 333

Query: 190 LGVAGLPAVVQFGLMMMLP 208
             +    A++   L+++LP
Sbjct: 334 FLILAALALLAALLLLLLP 352

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|233168 TIGR00883, 2A0106, metabolite-proton symporter

 Score = 57.3 bits (139), Expect = 1e-08
 Identities = 69/326 (21%), Positives = 120/326 (36%), Gaps = 67/326 (20%)

Query: 71  LIVSMAVAGAIF-----GAGFGGWINDRFGRKISLLGADVLFFIGAIIMAIAPQ------ 119
           L+ + A   A F     GA   G   DR GRK +L+   ++  IG +++ + P       
Sbjct: 34  LLATFATFAAGFLARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIGLLPSYATIGI 93

Query: 120 --PWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINL 177
             P +++L R+  G  +G     A LY++E +P   RG   S        G  LA L  L
Sbjct: 94  WAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVL 153

Query: 178 AFTKAPG-----TWRWMLG-VAGLPAVVQFGLM--MMLPESPRWLYRQNKVDEARAILEK 229
             +   G      W W +  +     V+  GL     L E+P +   Q K  + R  +  
Sbjct: 154 LLSYLLGDDALLEWGWRIPFLVSAVLVL-IGLYLRRNLEETPVFEKAQEKHKKKRGPI-- 210

Query: 230 IYPADQVEEEVNLLKQSVENEKAEEGLIGKDMISRLKGAFGNKIVRRGLYAGVTVQVAQQ 289
                                         + +++ +  F   ++  GL    T      
Sbjct: 211 -----------------------------AETLTKHRKPF---LLGLGLVIATTT----- 233

Query: 290 FVGINTVMYYSPTIVQFAGFASKSTALALSLVTSGLNALGSIVSMAFVDKYGRRRLMIVS 349
              + T   Y PT +      S ++AL + +++  L  +   +S A  D+ GRR ++I  
Sbjct: 234 TFYLITT--YLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLI-- 289

Query: 350 MFGLSSCLVALAVVFFQAAIHAPTVS 375
               +     LAV    A + + + +
Sbjct: 290 --IFTVLAALLAVPLLMALLDSGSFT 313

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc [Transport and binding proteins, Unknown substrate]. Length = 394

>gnl|CDD|130366 TIGR01299, synapt_SV2, synaptic vesicle protein SV2

 Score = 53.4 bits (128), Expect = 2e-07
 Identities = 58/222 (26%), Positives = 91/222 (40%), Gaps = 21/222 (9%)

Query: 22  WTTPYIMKLALSAGIGGLLFGYDTGVISGALLYIKEDFRDVEKKTWLQELIVSMAVAGAI 81
           W   +++ LAL A       G +  V+   L   ++D    +    +  LIV +   G +
Sbjct: 166 WALFFVLGLALMAD------GVEVFVVGFVLPSAEKDLCIPDSGKGMLGLIVYL---GMM 216

Query: 82  FGAGFGGWINDRFGRKISLLGADVLFFIGAIIMAIAPQPWVIILGRIFVGLGVGMASMTA 141
            GA F G + D+ GRK  LL    +    A   +        +  R+  G G+G A    
Sbjct: 217 VGAFFWGGLADKLGRKQCLLICLSVNGFFAFFSSFVQGYGFFLFCRLLSGFGIGGAIPIV 276

Query: 142 PLYISEASPAKIRGALVS-ANGFLITGGQF---LAYLI----NLAFTKAPG----TWRWM 189
             Y +E    + RG  +S    F + GG +   +A+ I      +F         +WR  
Sbjct: 277 FSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGWSFQMGSAYQFHSWRVF 336

Query: 190 LGVAGLPAVVQFGLMMMLPESPRWLYRQNKVDEARAILEKIY 231
           + V   P V   G +  +PESPR+     K DEA  IL+ I+
Sbjct: 337 VIVCAFPCVFAIGALTFMPESPRFFLENGKHDEAWMILKLIH 378

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by PFAM model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. Length = 742

>gnl|CDD|182225 PRK10077, xylE, D-xylose transporter XylE; Provisional

 Score = 51.6 bits (124), Expect = 7e-07
 Identities = 30/109 (27%), Positives = 53/109 (48%), Gaps = 6/109 (5%)

Query: 453 GWLAVVFLGAYIITYSPGMGTAPWIVNSEIYPLRYRGVGGGIAAVSNWTSNLIVSLTF-- 510
           G +A++ +  Y+  ++   G   W++ SEI+P   RG    IA  + W +N  VS TF  
Sbjct: 363 GIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPM 422

Query: 511 ----LTLTEALGSAGTFLLFAGFSLLGLVAIYLLVPETKGLAFEEVEKM 555
                 L     +  ++ ++    +L  + ++  VPETKG   EE+E +
Sbjct: 423 MDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEEMEAL 471

Length = 479

>gnl|CDD|182433 PRK10406, PRK10406, alpha-ketoglutarate transporter; Provisional

 Score = 51.3 bits (123), Expect = 7e-07
 Identities = 47/163 (28%), Positives = 72/163 (44%), Gaps = 24/163 (14%)

Query: 81  IFGAGF-----GGW----INDRFGRKISLLGADVLFFIGAIIMAIAP--------QPWVI 123
           +F AGF     GGW    I D+ GRK S+L +  +   G++++A  P         P ++
Sbjct: 68  VFAAGFLMRPIGGWLFGRIADKHGRKKSMLISVCMMCFGSLVIACLPGYETIGTWAPALL 127

Query: 124 ILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFTKAP 183
           +L R+F GL VG    T+  Y+SE +    +G   S     + GGQ LA L+ +   +  
Sbjct: 128 LLARLFQGLSVGGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLALLVVVVLQQTL 187

Query: 184 GT-------WRWMLGVAGLPAVVQFGLMMMLPESPRWLYRQNK 219
                    WR    +  + AVV   L   L E+ +   R  K
Sbjct: 188 EDAELREWGWRIPFALGAVLAVVALWLRRQLDETSQQETRALK 230

Length = 432

>gnl|CDD|225371 COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]

 Score = 49.5 bits (119), Expect = 3e-06
 Identities = 64/296 (21%), Positives = 103/296 (34%), Gaps = 58/296 (19%)

Query: 71  LIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFIGAIIMAIAPQPWVIILGRIFV 130
            +++    G   GA     +  R  R+  LLG   LF +  ++ A+AP   V++L R   
Sbjct: 52  QLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLSALAPSFAVLLLARALA 111

Query: 131 GLGVGMA-SMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFTKAPGT---W 186
           GL  G+  S+ A L      P K   AL      L+  G  LA ++ +      G    W
Sbjct: 112 GLAHGVFWSIAAALAARLVPPGKRGRALA-----LVFTGLTLATVLGVPLGTFLGQLFGW 166

Query: 187 RW-MLGVAGLPAVVQFGLMMMLPESPRWLYRQNKVDEARAILEKIYPADQVEEEVNLLKQ 245
           R   L +A L  +    L  +LP                       P++           
Sbjct: 167 RATFLAIAVLALLALLLLWKLLP-----------------------PSEISGS------- 196

Query: 246 SVENEKAEEGLIGKDMISRLKGAFGNKIVRRGLYAGVTVQVAQQFVGINTVMYYSPTIVQ 305
                           +  L        V  GL A   + +   F       Y  P +  
Sbjct: 197 ------------LPGPLRTLLRLLRRPGVLLGLLATF-LFMTGHFALYT---YIRPFLES 240

Query: 306 FAGFASKSTALALSLVTSGLNALGSIVSMAFVDKYGRRRLMIVSMFGLSSCLVALA 361
            AGF+  + +L L L       +G+++     D+ G RR +I ++  L+  L+AL 
Sbjct: 241 VAGFSVSAVSLVL-LAFGIAGFIGNLLGGRLADR-GPRRALIAALLLLALALLALT 294

Length = 394

>gnl|CDD|129965 TIGR00887, 2A0109, phosphate:H+ symporter

 Score = 49.7 bits (119), Expect = 3e-06
 Identities = 30/95 (31%), Positives = 43/95 (45%), Gaps = 11/95 (11%)

Query: 470 GMGTAPWIVNSEIYPLRYRGVGGGIAAVSNWTSNLIVSLTFLTLTEALGSAGTF------ 523
           G     +IV  E++P RYR    GI+A S     +I    FL L +       +      
Sbjct: 408 GPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWM 467

Query: 524 ----LLFAGFSLLGLVAIYLLVPETKGLAFEEVEK 554
                +FA F  LG++   LL+PETKG + EE+  
Sbjct: 468 GHVLEIFALFMFLGILFT-LLIPETKGKSLEELSG 501

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Anions]. Length = 502

>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily

 Score = 47.8 bits (114), Expect = 8e-06
 Identities = 23/105 (21%), Positives = 45/105 (42%), Gaps = 3/105 (2%)

Query: 71  LIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFIGAIIMAIAP---QPWVIILGR 127
           L++ +A      G    G ++DR GR+  LL A +L  + A+ +A+         +++  
Sbjct: 241 LLLGLAGLLGAIGRLLLGRLSDRLGRRRRLLLALLLLILAALGLALLSLTESSLWLLVAL 300

Query: 128 IFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLA 172
           + +G G G+        +S+ +P + RG          + G  L 
Sbjct: 301 LLLGFGAGLVFPALNALVSDLAPKEERGTASGLYNTAGSLGGALG 345

Length = 346

>gnl|CDD|233174 TIGR00893, 2A0114, D-galactonate transporter

 Score = 47.7 bits (114), Expect = 1e-05
 Identities = 43/193 (22%), Positives = 75/193 (38%), Gaps = 27/193 (13%)

Query: 69  QELIVSMAVAGAIFGAGF---------GGWINDRFGRKISLLGADVLFFIGAIIMAIAPQ 119
           ++L +S A  G +F A           GGW+ DRFG + +L    V++ +   + A A  
Sbjct: 22  EDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAGA 81

Query: 120 PWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVS----ANGFLITGGQFLAYLI 175
              + + R+ +G           L ++   PA  R   VS    A G     G  L   I
Sbjct: 82  YVSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWI 141

Query: 176 NLAFTKAPGTWRWMLGVAGLPA----VVQFGLMMMLPESPRWLYRQNKVDEARAILEKIY 231
            + F     +W+W   + G+      V+    +   P+  +WL      +E + I+    
Sbjct: 142 LIHF-----SWQWAFIIEGVLGIIWGVLWLKFIPDPPQKAKWL-----TEEEKYIVVGGL 191

Query: 232 PADQVEEEVNLLK 244
            A+Q  +  +  K
Sbjct: 192 LAEQQGKGPSTPK 204

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 399

>gnl|CDD|129965 TIGR00887, 2A0109, phosphate:H+ symporter

 Score = 45.9 bits (109), Expect = 5e-05
 Identities = 47/216 (21%), Positives = 87/216 (40%), Gaps = 31/216 (14%)

Query: 68  LQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFIGAIIMAIAPQP------W 121
           +   +   A  G + G  F GW+ D+ GRK       ++  I  +   ++P         
Sbjct: 57  VSAAVNGSASIGTLAGQLFFGWLADKLGRKRVYGMELIIMIIATVASGLSPGSSPKSVMA 116

Query: 122 VIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSA----NGFLITGGQFLAYLINL 177
            +   R ++G+G+G     + +  SE +  K RGA+++A     GF I  G  +A ++  
Sbjct: 117 TLCFWRFWLGVGIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIVLA 176

Query: 178 AFTK---APGT---------------WRWMLGVAGLPAVVQFGLMMMLPESPRW--LYRQ 217
            F     A                  WR ++G   +PA++     + +PE+PR+     +
Sbjct: 177 GFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALYFRLTIPETPRYTADVAK 236

Query: 218 NKVDEARAILEKIYPADQVE-EEVNLLKQSVENEKA 252
           +    A  +   +    + E +EV     +VE  KA
Sbjct: 237 DVEQAASDMSAVLQVKIEAEPDEVEKASTAVEVPKA 272

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Anions]. Length = 502

>gnl|CDD|222060 pfam13347, MFS_2, MFS/sugar transport protein

 Score = 45.7 bits (109), Expect = 5e-05
 Identities = 32/144 (22%), Positives = 63/144 (43%), Gaps = 9/144 (6%)

Query: 7   SKASKTEFTECWNIVWTTPYIMKLALSAGIGGLLFGYDTGVISGALLYIKEDFRDVEKKT 66
            +  K    + +  ++    ++ L L      LL      V +G LLY    F  V    
Sbjct: 204 EQKEKVSLRDMFKALFKNRPLLILLLLY----LLNALAMAVRNGLLLYY---FTYVLGNA 256

Query: 67  WLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFIGAIIMAIAP--QPWVII 124
            L  +++ +    AI GA    W+  RFG+K + L   +L  IG +++   P    W+ +
Sbjct: 257 GLFSVLLLIGTIAAILGAPLWPWLAKRFGKKRTFLLGMLLAAIGLVLLFFLPPGSLWLFL 316

Query: 125 LGRIFVGLGVGMASMTAPLYISEA 148
           +  +  G+G+G+A++     +++ 
Sbjct: 317 VLVVLAGIGLGLATLLPWAMLADV 340

This family is part of the major facilitator superfamily of membrane transport proteins. Length = 425

>gnl|CDD|223553 COG0477, ProP, Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

 Score = 45.1 bits (105), Expect = 6e-05
 Identities = 68/347 (19%), Positives = 117/347 (33%), Gaps = 23/347 (6%)

Query: 28  MKLALSAGIGGLLFGYDTGVISGALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFG 87
            +  L+  +  LL G D G++S AL  +         +     L++S    G   G+   
Sbjct: 1   KRSLLALALAALLLGLDLGLLSPALPLLLSTLSLSSGRLLYG-LLLSAFFLGYAIGSLLA 59

Query: 88  GWINDRFGRKISLLGADVLFFIGAIIMAIAP--QPWVIILGRIFVGLGVGMASMTAPLYI 145
           G + DR+GR+  L+   +LF +G +++A+AP     ++++ R+  GLG G     A   +
Sbjct: 60  GPLGDRYGRRKVLIIGLLLFLLGTLLLALAPNVGLALLLILRLLQGLGGGGLLPVASALL 119

Query: 146 SEASPAKIRGALVSA--NGFLITGGQFLAYLINLAFTK-APGTWRWMLGVAGLPAVVQFG 202
           SE  P      L            G  L  L+           WR    +A L  ++   
Sbjct: 120 SEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGALLWGWRAAFLLAALLGLLLLI 179

Query: 203 LMMMLPESPRWLYRQNKVDEARAILEKIYPADQVEEEVNLLKQSVENEKAEEGLIGKDMI 262
           L+++L            V  A   L K+     +                   L G  ++
Sbjct: 180 LVLLLDLLLAAPRLPLAVGLALIELGKLLLLLLI-----------------LLLGGLVLL 222

Query: 263 SRLKGAFGNKIVRRGLYAGVTVQVAQQFVGINTVMYYSPTIVQFAGFASKSTALALSLVT 322
                        R L  G+ + +   FVG   ++   P ++  AG  S     A  L+ 
Sbjct: 223 LLGLYLSAAGFGLRALLLGLGLALLALFVGALILLVLLPILLGAAGGLSALVGAAGGLLA 282

Query: 323 SGLNALGSIVSMAFVDKYGRRRLMIVSMFGLSSCLVALAVVFFQAAI 369
             L  L  ++           RL             AL +      +
Sbjct: 283 LILLGLAGLLGTLVGGSLLVDRLGRSLGLRAILLAGALLLAILLLVL 329

Length = 338

>gnl|CDD|236315 PRK08633, PRK08633, 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

 Score = 44.1 bits (105), Expect = 2e-04
 Identities = 39/159 (24%), Positives = 59/159 (37%), Gaps = 27/159 (16%)

Query: 54  YIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRF-GRKISL----LGADVLFF 108
           Y KE               V   +A +  G G G  +  R  GR I L    LGA +   
Sbjct: 258 YAKEVLGLDN------TFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGA-LGLA 310

Query: 109 IGAIIMAIAPQPWVIILGRIFVGLGVGMASMTAPL--YISEASPAKIRGALVSANGFLIT 166
           +   ++  AP    +++     G   G+  +  PL   I   +P K  G +++AN FL  
Sbjct: 311 LSLFLLPTAPSLASVLVLFFLFGFSAGLFIV--PLNALIQFRAPEKELGKVLAANNFL-- 366

Query: 167 GGQFLAYLINLAFTKAPGTWRWMLGVAGLPAVVQFGLMM 205
             Q +  L+ LA T        +    GL     F L+ 
Sbjct: 367 --QNVGMLLFLALT-------TLFSGLGLSPAGLFYLIA 396

Length = 1146

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 42.7 bits (101), Expect = 4e-04
 Identities = 19/97 (19%), Positives = 40/97 (41%), Gaps = 2/97 (2%)

Query: 281 GVTVQVAQQFVGINTVMYYSPTIVQFAGFASKSTALALSLVTSGLNALGSIVSMAFVDKY 340
            + +       G   ++ Y P  +Q     S + A  L  +      LG+++     D+ 
Sbjct: 179 LLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRL 238

Query: 341 GRRRLMIVSMFGLSSCLVALAVVFFQAAIHAPTVSQI 377
           GRRRL++  + GL    + L ++    ++    V+ +
Sbjct: 239 GRRRLLL--LIGLLLAALGLLLLALAPSLALLLVALL 273

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|225365 COG2807, CynX, Cyanate permease [Inorganic ion transport and metabolism]

 Score = 42.7 bits (101), Expect = 4e-04
 Identities = 36/142 (25%), Positives = 61/142 (42%), Gaps = 11/142 (7%)

Query: 69  QELIVSMAVAGAI-------FG--AGFGGWINDRFGRKISLLGADVLFFIGAIIMAIAPQ 119
           Q+L +S +VAG +       FG  A     +  RFG + SL  A +L   G I++     
Sbjct: 40  QDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIAAG-ILIRSLGG 98

Query: 120 PWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAF 179
             ++ LG +  G G+ + ++  P  I    P ++ G +       +  G  LA  + +  
Sbjct: 99  LPLLFLGTLLAGAGIAVINVLLPSLIKRDFPKRV-GLMTGLYSTSLGAGAALAAALAVPL 157

Query: 180 TKAPGTWRWMLGVAGLPAVVQF 201
            +  G WR  LG   L A++  
Sbjct: 158 AQHSGGWRGALGFWALLALLAL 179

Length = 395

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 41.5 bits (98), Expect = 7e-04
 Identities = 21/100 (21%), Positives = 36/100 (36%), Gaps = 3/100 (3%)

Query: 442 TYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEIYPLRYRGVGGGIAAVSNWT 501
              ++  PS    L  + L  + + ++           SE+ P   RG   G+       
Sbjct: 256 LLLLALAPSLALLLVALLLLGFGLGFAFPALLTLA---SELAPPEARGTASGLFNTFGSL 312

Query: 502 SNLIVSLTFLTLTEALGSAGTFLLFAGFSLLGLVAIYLLV 541
              +  L    L +  G  G FL+ A  +LL  + + LL 
Sbjct: 313 GGALGPLLAGLLLDTGGYGGVFLILAALALLAALLLLLLP 352

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|162098 TIGR00900, 2A0121, H+ Antiporter protein

 Score = 41.2 bits (97), Expect = 0.001
 Identities = 33/175 (18%), Positives = 62/175 (35%), Gaps = 8/175 (4%)

Query: 3   EGGVSKASKTEFTECWNIVWTTPYIMKLALSAGIGGLLFGYDTGVISGALLYIKEDFRDV 62
              +S A   +  E    V   P +  L L A +  L+F      I     Y+       
Sbjct: 188 IQALSNAVLRDTREGIKFVLKNPLLRTLLLLALLFNLVF---APAIVALFPYV---QSKY 241

Query: 63  EKKTWLQELIVSMAVA-GAIFGAGFGGWINDRFGRKISLLGADVLFFIGAIIMAIAPQP- 120
             +       V  A   GA+ GA   G +   F R   + GA  +  +  +++ + P   
Sbjct: 242 LGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVGLTPPNF 301

Query: 121 WVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLI 175
            + ++    +G+G G  ++     +    PA++ G +  A   L      L  ++
Sbjct: 302 PLFLVLWFAIGVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLIL 356

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 365

>gnl|CDD|183255 PRK11646, PRK11646, multidrug resistance protein MdtH; Provisional

 Score = 41.2 bits (97), Expect = 0.001
 Identities = 21/48 (43%), Positives = 28/48 (58%)

Query: 86  FGGWINDRFGRKISLLGADVLFFIGAIIMAIAPQPWVIILGRIFVGLG 133
           FGG I DRFG K  ++   ++   G   MAIA +PW++ L  I  GLG
Sbjct: 65  FGGAIADRFGAKPMIVTGMLMRAAGFATMAIAHEPWLLWLSCILSGLG 112

Length = 400

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	576
KOG0569	485	consensus Permease of the major facilitator superf	100.0
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	100.0
PRK10077	479	xylE D-xylose transporter XylE; Provisional	100.0
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	100.0
KOG0254	513	consensus Predicted transporter (major facilitator	100.0
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	100.0
PRK10642	490	proline/glycine betaine transporter; Provisional	100.0
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	100.0
PRK10406	432	alpha-ketoglutarate transporter; Provisional	100.0
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	100.0
TIGR00898	505	2A0119 cation transport protein.	100.0
PRK11663	434	regulatory protein UhpC; Provisional	100.0
PRK12307	426	putative sialic acid transporter; Provisional	100.0
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	100.0
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	100.0
TIGR00891	405	2A0112 putative sialic acid transporter.	100.0
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	100.0
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	100.0
PRK03545	390	putative arabinose transporter; Provisional	100.0
PRK09952	438	shikimate transporter; Provisional	100.0
PRK15075	434	citrate-proton symporter; Provisional	100.0
PRK03893	496	putative sialic acid transporter; Provisional	100.0
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	100.0
PRK09705	393	cynX putative cyanate transporter; Provisional	100.0
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	100.0
PRK14995	495	methyl viologen resistance protein SmvA; Provision	100.0
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	100.0
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	100.0
TIGR00893	399	2A0114 d-galactonate transporter.	100.0
PRK03699	394	putative transporter; Provisional	100.0
TIGR00892	455	2A0113 monocarboxylate transporter 1.	100.0
PRK10489	417	enterobactin exporter EntS; Provisional	100.0
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	100.0
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	100.0
PRK10091	382	MFS transport protein AraJ; Provisional	100.0
TIGR00895	398	2A0115 benzoate transport.	100.0
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	100.0
PRK05122	399	major facilitator superfamily transporter; Provisi	100.0
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.98
PLN00028	476	nitrate transmembrane transporter; Provisional	99.98
PRK10504	471	putative transporter; Provisional	99.98
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.97
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.97
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	99.97
PRK12382	392	putative transporter; Provisional	99.97
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.97
TIGR00900	365	2A0121 H+ Antiporter protein.	99.97
PRK09874	408	drug efflux system protein MdtG; Provisional	99.97
PRK03633	381	putative MFS family transporter protein; Provision	99.97
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.97
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.97
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	99.97
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.97
PRK15403	413	multidrug efflux system protein MdtM; Provisional	99.97
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.97
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.97
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.97
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.97
PRK11043	401	putative transporter; Provisional	99.97
PRK10133	438	L-fucose transporter; Provisional	99.97
KOG1330	493	consensus Sugar transporter/spinster transmembrane	99.96
PRK11195	393	lysophospholipid transporter LplT; Provisional	99.96
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.96
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	99.96
PRK11010	491	ampG muropeptide transporter; Validated	99.96
PRK15011	393	sugar efflux transporter B; Provisional	99.96
PRK11652	394	emrD multidrug resistance protein D; Provisional	99.96
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.96
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	99.95
PRK10054	395	putative transporter; Provisional	99.95
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	99.95
KOG2532	466	consensus Permease of the major facilitator superf	99.95
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.95
KOG2533	495	consensus Permease of the major facilitator superf	99.95
TIGR00805	633	oat sodium-independent organic anion transporter.	99.95
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.95
PRK09528	420	lacY galactoside permease; Reviewed	99.94
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.94
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.94
PRK11902	402	ampG muropeptide transporter; Reviewed	99.94
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.94
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.94
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.93
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	99.93
TIGR00901	356	2A0125 AmpG-related permease.	99.92
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.92
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	99.92
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.92
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	99.92
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	99.92
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	99.92
PRK10207	489	dipeptide/tripeptide permease B; Provisional	99.91
KOG2615	451	consensus Permease of the major facilitator superf	99.91
KOG3764	464	consensus Vesicular amine transporter [Intracellul	99.91
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.91
PTZ00207	591	hypothetical protein; Provisional	99.9
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	99.89
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	99.88
PRK09584	500	tppB putative tripeptide transporter permease; Rev	99.87
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	99.85
KOG2325	488	consensus Predicted transporter/transmembrane prot	99.84
PRK09669	444	putative symporter YagG; Provisional	99.84
PRK10429	473	melibiose:sodium symporter; Provisional	99.83
TIGR00788	468	fbt folate/biopterin transporter. The only functio	99.82
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	99.81
PRK15462	493	dipeptide/tripeptide permease D; Provisional	99.81
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	99.8
PF13347	428	MFS_2: MFS/sugar transport protein	99.79
PRK09848	448	glucuronide transporter; Provisional	99.79
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	99.79
KOG2563	480	consensus Permease of the major facilitator superf	99.78
PRK11462	460	putative transporter; Provisional	99.77
KOG3626	735	consensus Organic anion transporter [Secondary met	99.76
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	99.74
COG2211	467	MelB Na+/melibiose symporter and related transport	99.73
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	99.67
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	99.66
PRK10642	490	proline/glycine betaine transporter; Provisional	99.66
COG2270	438	Permeases of the major facilitator superfamily [Ge	99.64
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	99.55
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	99.53
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.51
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.49
KOG2816	463	consensus Predicted transporter ADD1 (major facili	99.49
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.47
PRK09528	420	lacY galactoside permease; Reviewed	99.47
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.46
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.44
PRK15011	393	sugar efflux transporter B; Provisional	99.43
PRK09874	408	drug efflux system protein MdtG; Provisional	99.41
PRK05122	399	major facilitator superfamily transporter; Provisi	99.41
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.4
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	99.4
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.37
PRK12382	392	putative transporter; Provisional	99.36
PRK10489	417	enterobactin exporter EntS; Provisional	99.35
TIGR00895	398	2A0115 benzoate transport.	99.32
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	99.32
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.31
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.31
PRK03545	390	putative arabinose transporter; Provisional	99.31
PRK11663	434	regulatory protein UhpC; Provisional	99.29
PRK03633	381	putative MFS family transporter protein; Provision	99.28
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.28
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.28
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.27
PRK10054	395	putative transporter; Provisional	99.27
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.27
PRK09952	438	shikimate transporter; Provisional	99.26
TIGR00893	399	2A0114 d-galactonate transporter.	99.25
PRK03699	394	putative transporter; Provisional	99.25
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.25
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.25
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.24
PRK09705	393	cynX putative cyanate transporter; Provisional	99.24
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.24
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	99.22
TIGR00900	365	2A0121 H+ Antiporter protein.	99.21
PRK03893	496	putative sialic acid transporter; Provisional	99.21
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.21
TIGR00891	405	2A0112 putative sialic acid transporter.	99.19
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	99.18
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.17
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.17
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.17
PRK11010	491	ampG muropeptide transporter; Validated	99.16
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.16
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.15
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.14
PRK10091	382	MFS transport protein AraJ; Provisional	99.14
PRK10504	471	putative transporter; Provisional	99.14
PRK12307	426	putative sialic acid transporter; Provisional	99.13
PRK15462	493	dipeptide/tripeptide permease D; Provisional	99.12
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.11
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	99.11
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	99.11
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	99.1
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.1
PLN00028	476	nitrate transmembrane transporter; Provisional	99.1
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.1
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.1
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.09
PRK11652	394	emrD multidrug resistance protein D; Provisional	99.09
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	99.08
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.08
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.07
PRK15403	413	multidrug efflux system protein MdtM; Provisional	99.07
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.07
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.07
PRK15075	434	citrate-proton symporter; Provisional	99.06
TIGR00898	505	2A0119 cation transport protein.	99.05
KOG3098	461	consensus Uncharacterized conserved protein [Funct	99.05
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.03
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	99.02
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	99.01
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.0
PRK11902	402	ampG muropeptide transporter; Reviewed	99.0
PRK11043	401	putative transporter; Provisional	99.0
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	98.99
TIGR00896	355	CynX cyanate transporter. This family of proteins	98.99
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	98.97
PRK10207	489	dipeptide/tripeptide permease B; Provisional	98.96
COG2270	438	Permeases of the major facilitator superfamily [Ge	98.96
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	98.96
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	98.94
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	98.93
COG0477	338	ProP Permeases of the major facilitator superfamil	98.93
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	98.92
TIGR00901	356	2A0125 AmpG-related permease.	98.9
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	98.9
KOG0569	485	consensus Permease of the major facilitator superf	98.9
PRK09584	500	tppB putative tripeptide transporter permease; Rev	98.9
KOG1330	493	consensus Sugar transporter/spinster transmembrane	98.89
PRK09848	448	glucuronide transporter; Provisional	98.88
PRK11195	393	lysophospholipid transporter LplT; Provisional	98.87
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	98.86
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	98.84
KOG3762	618	consensus Predicted transporter [General function	98.82
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	98.81
TIGR00805	633	oat sodium-independent organic anion transporter.	98.81
PF13347	428	MFS_2: MFS/sugar transport protein	98.79
KOG2615	451	consensus Permease of the major facilitator superf	98.78
PRK10133	438	L-fucose transporter; Provisional	98.72
PRK10429	473	melibiose:sodium symporter; Provisional	98.72
KOG0637	498	consensus Sucrose transporter and related proteins	98.68
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	98.67
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	98.67
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	98.64
PTZ00207	591	hypothetical protein; Provisional	98.62
PRK09669	444	putative symporter YagG; Provisional	98.61
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	98.6
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	98.6
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	98.6
KOG3764	464	consensus Vesicular amine transporter [Intracellul	98.59
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	98.59
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	98.56
KOG2532	466	consensus Permease of the major facilitator superf	98.53
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	98.51
KOG3574	510	consensus Acetyl-CoA transporter [Inorganic ion tr	98.49
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	98.49
KOG3762	618	consensus Predicted transporter [General function	98.41
PRK11462	460	putative transporter; Provisional	98.37
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	98.35
TIGR00788	468	fbt folate/biopterin transporter. The only functio	98.35
KOG0254	513	consensus Predicted transporter (major facilitator	98.29
COG2211	467	MelB Na+/melibiose symporter and related transport	98.28
PF06779	85	DUF1228: Protein of unknown function (DUF1228); In	98.27
KOG4332	454	consensus Predicted sugar transporter [Carbohydrat	98.2
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	98.2
KOG3810	433	consensus Micronutrient transporters (folate trans	98.18
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	98.18
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	98.16
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	98.15
KOG2533	495	consensus Permease of the major facilitator superf	98.14
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	98.09
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	98.08
PF03219	491	TLC: TLC ATP/ADP transporter; InterPro: IPR004667	97.99
COG3202	509	ATP/ADP translocase [Energy production and convers	97.92
KOG2816	463	consensus Predicted transporter ADD1 (major facili	97.91
PF13000	544	Acatn: Acetyl-coenzyme A transporter 1; InterPro:	97.9
KOG2325	488	consensus Predicted transporter/transmembrane prot	97.82
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	97.79
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	97.72
PF12832	77	MFS_1_like: MFS_1 like family	97.69
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	97.62
KOG1237	571	consensus H+/oligopeptide symporter [Amino acid tr	97.62
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	97.42
KOG3626	735	consensus Organic anion transporter [Secondary met	97.41
PF12832	77	MFS_1_like: MFS_1 like family	97.24
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	97.18
KOG1479	406	consensus Nucleoside transporter [Nucleotide trans	97.17
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	96.77
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	96.74
PRK03612	521	spermidine synthase; Provisional	96.66
PF07672	267	MFS_Mycoplasma: Mycoplasma MFS transporter; InterP	96.52
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	96.5
KOG2563	480	consensus Permease of the major facilitator superf	96.39
KOG3097	390	consensus Predicted membrane protein [Function unk	96.15
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	96.12
KOG3098	461	consensus Uncharacterized conserved protein [Funct	95.8
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	95.71
COG0477	338	ProP Permeases of the major facilitator superfamil	95.48
KOG0637	498	consensus Sucrose transporter and related proteins	94.99
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	94.87
PF06779	85	DUF1228: Protein of unknown function (DUF1228); In	94.04
PF01733	309	Nucleoside_tran: Nucleoside transporter; InterPro:	92.92
PRK03612	521	spermidine synthase; Provisional	92.84
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	91.63
KOG1237	571	consensus H+/oligopeptide symporter [Amino acid tr	91.54
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	91.23
PF03219	491	TLC: TLC ATP/ADP transporter; InterPro: IPR004667	91.14
KOG1479	406	consensus Nucleoside transporter [Nucleotide trans	90.09
COG3202	509	ATP/ADP translocase [Energy production and convers	88.75
KOG4332	454	consensus Predicted sugar transporter [Carbohydrat	87.44
KOG3880	409	consensus Predicted small molecule transporter inv	86.93
KOG4830	412	consensus Predicted sugar transporter [Carbohydrat	84.76
PF13000	544	Acatn: Acetyl-coenzyme A transporter 1; InterPro:	84.58
PF06912	209	DUF1275: Protein of unknown function (DUF1275); In	81.42
KOG2601	503	consensus Iron transporter [Inorganic ion transpor	81.42
KOG3810	433	consensus Micronutrient transporters (folate trans	80.75

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=100.00  E-value=8.4e-42  Score=360.90  Aligned_cols=451  Identities=31%  Similarity=0.546  Sum_probs=381.1

Q ss_pred             hhhHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhh--------c--cchh-hhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008137           24 TPYIMKLALSAGIGGLLFGYDTGVISGALLYIKEDF--------R--DVEK-KTWLQELIVSMAVAGAIFGAGFGGWIND   92 (576)
Q Consensus        24 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~--------~--~~~~-~~~~~g~i~s~~~~~~~i~~~~~G~l~d   92 (576)
                      +++........+++.+-.+|....+++..+.+.+-.        +  .+++ -....+.+.+++.+|.++|+++.|+++|
T Consensus         6 t~~L~~~~~~~~~gsf~~Gy~~~~iNap~~~i~~f~n~t~~~r~g~~~s~~~~~~lwS~~vs~f~iG~~~Gs~~~~~la~   85 (485)
T KOG0569|consen    6 TRRLLLAVIVATLGSFQFGYNIGVVNAPQELIKSFINETLIERYGLPLSDSTLDLLWSLIVSIFFIGGMIGSFSSGLLAD   85 (485)
T ss_pred             cHHHHHHHHHHHHhchhhhhhheecCchHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344455566667777888899888888776655433        3  2222 1235599999999999999999999999


Q ss_pred             ccCchHHHHHHHHHHHHHHHHHHhc---chHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHH
Q 008137           93 RFGRKISLLGADVLFFIGAIIMAIA---PQPWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQ  169 (576)
Q Consensus        93 r~Grr~~~~~~~~~~~i~~~~~~~~---~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~  169 (576)
                      |+|||..+.++.++..++.+++.++   +++.+++++|++.|+..|......+.|+.|..|++.||......+.+..+|.
T Consensus        86 ~~GRK~~l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i~Gl~~gl~~~~~pmyl~E~sP~~~RG~~g~~~~~~~~~g~  165 (485)
T KOG0569|consen   86 RFGRKNALLLSNLLAVLAALLMGLSKSAPSFEMLILGRLIVGLACGLSTGLVPMYLTEISPKNLRGALGTLLQIGVVIGI  165 (485)
T ss_pred             hhcchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHHHhhcChhhhccHHHHHHHHHHHHHH
Confidence            9999999999999988888877664   6899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHH-hcCCCchhHHHHHHhHHHHHHHHHHHhhccCChhHHhh-cCCHHHHHHHHHHhCCchhhhHHHHHHHHHH
Q 008137          170 FLAYLINLA-FTKAPGTWRWMLGVAGLPAVVQFGLMMMLPESPRWLYR-QNKVDEARAILEKIYPADQVEEEVNLLKQSV  247 (576)
Q Consensus       170 ~l~~~l~~~-l~~~~~~Wr~~f~v~~~~~~~~~~~~~~l~esp~~l~~-~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~  247 (576)
                      .++..++.. +......|++.+.+..+++++.++.+.++||||+|+.. +++.++|++.++..++.++.+.+.++..+..
T Consensus       166 ll~~~~~l~~ilGt~~~W~~l~~~~~i~~~~~l~~l~~~PESPk~Ll~~k~~~~~A~~sl~~y~G~~~~~~~~e~~~~e~  245 (485)
T KOG0569|consen  166 LLGQVLGLPSLLGTEDLWPYLLAFPLIPALLQLALLPFLPESPKYLLIKKGDEEEARKALKFYRGKEDVEAEIEEMLREI  245 (485)
T ss_pred             HHHHHHccHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHcCCHHHHHHHHHHHhCCCcchhHHHHHHHHH
Confidence            999766643 33333359999999999999999999999999999988 8999999999999999877666555544433


Q ss_pred             HhhhhhhcccchhhHHHhhhhcccchhhhhhHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcCCchhHHHHHHHHHhHHHH
Q 008137          248 ENEKAEEGLIGKDMISRLKGAFGNKIVRRGLYAGVTVQVAQQFVGINTVMYYSPTIVQFAGFASKSTALALSLVTSGLNA  327 (576)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  327 (576)
                      +++...+     +...+++++++++..|+.....+.+...+++.+.+...+|...++++.|. +...+.......++..+
T Consensus       246 ~~~~~~~-----~~~~sl~~~~~~~~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~-~~~~a~~an~~~g~v~~  319 (485)
T KOG0569|consen  246 EEEELEK-----KKQISLRQLLKNPTLRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGF-TPEEAQYANLGIGIVNL  319 (485)
T ss_pred             HHhcccc-----ccCCcHHHHhcCcchhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHH
Confidence            3322221     11167889999999999999999999999999999999999999999997 67777888888899999


Q ss_pred             HHHHHHHHhhcccCChHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccccccCCCCCCCCcccccCCCCccccccccc
Q 008137          328 LGSIVSMAFVDKYGRRRLMIVSMFGLSSCLVALAVVFFQAAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLK  407 (576)
Q Consensus       328 ig~~~~g~l~dk~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  407 (576)
                      +.++++.++.||+|||++++.++.++.++.+++...........                                    
T Consensus       320 ~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~~------------------------------------  363 (485)
T KOG0569|consen  320 LSTLVSPFLIDRLGRRPLLLISLSLMAVALLLMSIALFLSNSFG------------------------------------  363 (485)
T ss_pred             HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhh------------------------------------
Confidence            99999999999999999999999999999888877655432210                                    


Q ss_pred             ccccccCCCCCCCCCCcccccccccccccccccccccccCCCCcchhHHHHHHHHHHHHhcCCcccccchhccccccccc
Q 008137          408 AKCGFCAHKGNEYLPGACLIDEKSTDTLCSDEHRTYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEIYPLRY  487 (576)
Q Consensus       408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~  487 (576)
                                                        +|        ..+..+++.+.+..+|++|.+|+.+.+.+|++|++.
T Consensus       364 ----------------------------------~~--------~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~  401 (485)
T KOG0569|consen  364 ----------------------------------SW--------LSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSA  401 (485)
T ss_pred             ----------------------------------hH--------HHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccc
Confidence                                              01        124567888999999999999999999999999999


Q ss_pred             cccchhHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHHhCC
Q 008137          488 RGVGGGIAAVSNWTSNLIVSLTFLTLTEALGSAGTFLLFAGFSLLGLVAIYLLVPETKGLAFEEVEKMLETG  559 (576)
Q Consensus       488 rg~~~g~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  559 (576)
                      |..+++.....+++++++....+..+.+..|. ..|+++.+.+++..+..++.+||||+|+.+|+.+..++.
T Consensus       402 R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~-~~filF~i~~~~~~i~~~~~lPETkgr~~~eI~~~~~~~  472 (485)
T KOG0569|consen  402 RSAAQSVATAVNWLSNFIVGFAFPPLQNVIGP-YVFILFVIPLAIFLIYLYRYLPETKGRTPYEIIEELEKR  472 (485)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHhC
Confidence            99999999999999999999999999999998 689999999999999999999999999999988877765

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=100.00  E-value=1.6e-39  Score=364.00  Aligned_cols=437  Identities=20%  Similarity=0.217  Sum_probs=331.0

Q ss_pred             HHHhhchhhHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCch
Q 008137           18 WNIVWTTPYIMKLALSAGIGGLLFGYDTGVISGALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRK   97 (576)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr   97 (576)
                      .++....++.|.++++++++.+..+++...++.++|.+.++++.+..+.   +++.+++.++.+++++++|+++||+|||
T Consensus       156 l~~~~~~~~~~~l~~i~~l~~~~~g~d~~~is~ilp~i~~~~gls~~~~---g~l~s~~~lG~iiG~li~G~LsDR~GRR  232 (742)
T TIGR01299       156 IQECGHGRFQWALFFVLGLALMADGVEVFVVGFVLPSAEKDLCIPDSGK---GMLGLIVYLGMMVGAFFWGGLADKLGRK  232 (742)
T ss_pred             HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhCcH
Confidence            3445567788999999999999999999999999999999999988887   9999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHH
Q 008137           98 ISLLGADVLFFIGAIIMAIAPQPWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINL  177 (576)
Q Consensus        98 ~~~~~~~~~~~i~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~  177 (576)
                      +++++++++++++++++++++++++++++|++.|++.|+..+...++++|++|+++|+++++++.++..+|.++++.++.
T Consensus       233 ~~lii~lil~~i~~ll~afa~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~  312 (742)
T TIGR01299       233 QCLLICLSVNGFFAFFSSFVQGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAW  312 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999998776


Q ss_pred             HhcCCC------------chhHHHHHHhHHHHHHHHHHHhhccCChhHHhhcCCHHHHHHHHHHhCCchhhh----HHH-
Q 008137          178 AFTKAP------------GTWRWMLGVAGLPAVVQFGLMMMLPESPRWLYRQNKVDEARAILEKIYPADQVE----EEV-  240 (576)
Q Consensus       178 ~l~~~~------------~~Wr~~f~v~~~~~~~~~~~~~~l~esp~~l~~~~~~~~~~~~l~~i~~~~~~~----~~~-  240 (576)
                      .+....            .+||+.+++.+++.++.++.++++||+|+|+..+++.+++.+.+++++..+...    .+. 
T Consensus       313 ~il~~~G~~~~~g~~~~~~gWR~l~~i~~lp~ll~ll~~~~lPESPrwL~~~gr~~eA~~iL~~i~~~n~~~~~~~~~~~  392 (742)
T TIGR01299       313 AIIPHYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGALTFMPESPRFFLENGKHDEAWMILKLIHDTNMRAKGHPEKVF  392 (742)
T ss_pred             HHHHhccchhccccccccccHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHCCCHHHHHHHHHHHhcCCCCCcCchhHHH
Confidence            654321            259999999998888887778889999999999999999999998887654321    110 


Q ss_pred             --HHHHHHHHhh---h-hhhc------------ccchhhHHHhhhhcccchhhhhhHHHHHHHHHHHHHhhHHHHhhhHH
Q 008137          241 --NLLKQSVENE---K-AEEG------------LIGKDMISRLKGAFGNKIVRRGLYAGVTVQVAQQFVGINTVMYYSPT  302 (576)
Q Consensus       241 --~~~~~~~~~~---~-~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (576)
                        +..+......   . ....            ......+.+++++++.+ ++++.+....+++. ...+++.+..|+|.
T Consensus       393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lf~~~-~~~~tl~l~~~wf~-~~~~yygl~~w~P~  470 (742)
T TIGR01299       393 SVNHIKTIHQEDELIEIESDTGTWYQRCFVRALSEGGGIWGNFLRCFNPE-VREITIKLMGVWFT-LSFGYYGLSVWFPD  470 (742)
T ss_pred             HHHHHHHhhhhhhhhcccccccchhhcchhhhhhhhhhHHHHHHHHcCcc-HHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence              0111000000   0 0000            00011223455555554 45555555555544 44567888888897


Q ss_pred             HHHhh------------------------------------------cC-----C---c---------------------
Q 008137          303 IVQFA------------------------------------------GF-----A---S---------------------  311 (576)
Q Consensus       303 ~~~~~------------------------------------------~~-----~---~---------------------  311 (576)
                      ++...                                          +.     .   +                     
T Consensus       471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~  550 (742)
T TIGR01299       471 MIKHLQADDYAALTKNFPGDKVAHFSFNFTLENQIHRGGEYDNDKFIGLKFKSVSFEDSLFEECTFDDVTSSNTFFKNCT  550 (742)
T ss_pred             HHHHHHHHHHHhhhccccccchhccccccchhhhhccccccccchhhcccccccccccccccccceeeccccchhhhccc
Confidence            75431                                          00     0   0                     


Q ss_pred             -------------------------------------------hhHHHHHHHHHhHHHHHHHHHHHHhhcccCChHHHHH
Q 008137          312 -------------------------------------------KSTALALSLVTSGLNALGSIVSMAFVDKYGRRRLMIV  348 (576)
Q Consensus       312 -------------------------------------------~~~~~~~~~~~~~~~~ig~~~~g~l~dk~grr~~~~~  348 (576)
                                                                 .........+..++.+++.+++|+++||+|||+++..
T Consensus       551 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~  630 (742)
T TIGR01299       551 FIDTLFENTDFEEYKFIDSEFQNCSFLHNKEGCPIDFDGDDEGAYMIYFVNFLGTLAVLPGNIVSALLMDKIGRLRMLAG  630 (742)
T ss_pred             hhhhhccccchhhhhhhhhhhhhccccccCCccCccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence                                                       0012333456667889999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhcCCCccccccccCCCCCCCCcccccCCCCcccccccccccccccCCCCCCCCCCccccc
Q 008137          349 SMFGLSSCLVALAVVFFQAAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAHKGNEYLPGACLID  428 (576)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  428 (576)
                      ++++.+++.+++.+....                                                              
T Consensus       631 ~~~lsai~~ll~~~~~s~--------------------------------------------------------------  648 (742)
T TIGR01299       631 SMVLSCISCFFLSFGNSE--------------------------------------------------------------  648 (742)
T ss_pred             HHHHHHHHHHHHHHHccH--------------------------------------------------------------
Confidence            888888887766544210                                                              


Q ss_pred             ccccccccccccccccccCCCCcchhHHHHHHHHHHHHhcCCcccccchhccccccccccccchhHHHHHHHHHHHHHHH
Q 008137          429 EKSTDTLCSDEHRTYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEIYPLRYRGVGGGIAAVSNWTSNLIVSL  508 (576)
Q Consensus       429 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~g~~~~~~  508 (576)
                                               +..+++.+++.++. .+..+....+++|++|++.|++++|+.++.+.+|++++|+
T Consensus       649 -------------------------~~ll~~~~l~g~~~-~~~~~~~~a~~aEl~Pt~~Rgta~Gi~~~~~rlGaiigp~  702 (742)
T TIGR01299       649 -------------------------SAMIALLCLFGGLS-IAAWNALDVLTVELYPSDKRATAFGFLNALCKAAAVLGIL  702 (742)
T ss_pred             -------------------------HHHHHHHHHHHHHH-HHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                                     12222222333222 2344566788999999999999999999999999999999


Q ss_pred             HHHHHHHhhccchhhHHHHHHHHHHHHHHHhhccCCCCCCH
Q 008137          509 TFLTLTEALGSAGTFLLFAGFSLLGLVAIYLLVPETKGLAF  549 (576)
Q Consensus       509 ~~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  549 (576)
                      +.+.+.+. +...+|++.+++.+++.++.+ ++|||+++.+
T Consensus       703 i~g~L~~~-~~~~pf~i~a~~lll~~ll~~-~LPET~~~~l  741 (742)
T TIGR01299       703 IFGSFVGI-TKAAPILFASAALACGGLLAL-KLPDTRGQVL  741 (742)
T ss_pred             HHHHHHHh-hhHHHHHHHHHHHHHHHHHHH-hCCCCccccc
Confidence            99988775 455678888888777776655 4699998653

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=100.00  E-value=6.4e-39  Score=348.71  Aligned_cols=436  Identities=33%  Similarity=0.584  Sum_probs=328.7

Q ss_pred             hhhHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhh--------ccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccC
Q 008137           24 TPYIMKLALSAGIGGLLFGYDTGVISGALLYIKEDF--------RDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFG   95 (576)
Q Consensus        24 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~--------~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~G   95 (576)
                      .++..+.+.+++++.+..++|...+++..|.+.++|        +.+..+.   +++.+++.++..++++++|+++||+|
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~s~~~ig~~~~~~~~G~l~dr~G   83 (479)
T PRK10077          7 SSYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLL---GFCVASALIGCIIGGALGGYCSNRFG   83 (479)
T ss_pred             chHHHHHHHHHHHHHHhcCcccceehHhHHHHHHHhcccccccccCChhHH---HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            345677778888899999999999999999999988        5555555   99999999999999999999999999


Q ss_pred             chHHHHHHHHHHHHHHHHHHhc------------chHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHH
Q 008137           96 RKISLLGADVLFFIGAIIMAIA------------PQPWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGF  163 (576)
Q Consensus        96 rr~~~~~~~~~~~i~~~~~~~~------------~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~  163 (576)
                      ||++++++.+++.++.++++++            +.++.++++|+++|++.|+..+...++++|++|+++|++++++.+.
T Consensus        84 rr~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~  163 (479)
T PRK10077         84 RRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQF  163 (479)
T ss_pred             cHHHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHH
Confidence            9999999999999999888863            2356788999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhc--------CCCchhHHHHHHhHHHHHHHHHHHhhccCChhHHhhcCCHHHHHHHHHHhCCchh
Q 008137          164 LITGGQFLAYLINLAFT--------KAPGTWRWMLGVAGLPAVVQFGLMMMLPESPRWLYRQNKVDEARAILEKIYPADQ  235 (576)
Q Consensus       164 ~~~~G~~l~~~l~~~l~--------~~~~~Wr~~f~v~~~~~~~~~~~~~~l~esp~~l~~~~~~~~~~~~l~~i~~~~~  235 (576)
                      +..+|.++++.+++.+.        +.. +||+.|++.+++.++..+..+++||+|+++..+++.+++++..++....+.
T Consensus       164 ~~~~G~~~~~~~~~~~~~~~~~~~~~~~-gWr~~f~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~~~~~~~  242 (479)
T PRK10077        164 AIIFGQLVVYFVNYFIARSGDASWLNTD-GWRYMFASEAIPALLFLMLLYFVPETPRYLMSRGKQEQAEGILRKIMGNTL  242 (479)
T ss_pred             HHHHHHHHHHHHHHHHhccCcccccccC-ChHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHcCCHHHHHHHHHHHcCChh
Confidence            99999999988776553        223 499999998888887776677899999988777777777666665544332


Q ss_pred             hhHHHHHHHHHHHhhhhhhcccchhhHHHhhhhcccchhhhhhHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcCCchhHH
Q 008137          236 VEEEVNLLKQSVENEKAEEGLIGKDMISRLKGAFGNKIVRRGLYAGVTVQVAQQFVGINTVMYYSPTIVQFAGFASKSTA  315 (576)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (576)
                      .....+.......++.           ...+..+.  ..............+.+..+++...++.|.+.++.+. +....
T Consensus       243 ~~~~~~~~~~~~~~~~-----------~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~g~-~~~~~  308 (479)
T PRK10077        243 ATQALQEIKHSLDHGR-----------KTGGKLLM--FGVGVIVIGVMLSVFQQFVGINVVLYYAPEIFKTLGA-STDIA  308 (479)
T ss_pred             HHHHHHHHHHHHHHhh-----------hhhhhhcc--hhHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHcCC-CCchH
Confidence            2222211111111000           00011111  0111122222333444555566677888888887766 44445


Q ss_pred             HHHHHHHhHHHHHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccccccCCCCCCCCcccccC
Q 008137          316 LALSLVTSGLNALGSIVSMAFVDKYGRRRLMIVSMFGLSSCLVALAVVFFQAAIHAPTVSQIESSHFGGNNTCPAYITDG  395 (576)
Q Consensus       316 ~~~~~~~~~~~~ig~~~~g~l~dk~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  395 (576)
                      ........+..+++.+++++++||+|||++++.+.++.+++.+++.......                            
T Consensus       309 ~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~----------------------------  360 (479)
T PRK10077        309 LLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQ----------------------------  360 (479)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcC----------------------------
Confidence            5566667778899999999999999999999999988888877765442210                            


Q ss_pred             CCCcccccccccccccccCCCCCCCCCCcccccccccccccccccccccccCCCCcchhHHHHHHHHHHHHhcCCccccc
Q 008137          396 NAKSWNCMDCLKAKCGFCAHKGNEYLPGACLIDEKSTDTLCSDEHRTYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAP  475 (576)
Q Consensus       396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  475 (576)
                                                                             ...+.....++.+..++.....|..
T Consensus       361 -------------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~  385 (479)
T PRK10077        361 -------------------------------------------------------APGIVALLSMLFYVAAFAMSWGPVC  385 (479)
T ss_pred             -------------------------------------------------------cccHHHHHHHHHHHHHHhccccchh
Confidence                                                                   0012333444555555555556777


Q ss_pred             chhccccccccccccchhHHHHHHHHHHHHHHHHHHHHH------HhhccchhhHHHHHHHHHHHHHHHhhccCCCCCCH
Q 008137          476 WIVNSEIYPLRYRGVGGGIAAVSNWTSNLIVSLTFLTLT------EALGSAGTFLLFAGFSLLGLVAIYLLVPETKGLAF  549 (576)
Q Consensus       476 ~~~~~e~~p~~~rg~~~g~~~~~~~~g~~~~~~~~~~l~------~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  549 (576)
                      +.+++|.+|++.|++++|+.+..++++.++++.+++.+.      +..++...|++.+++++++.++.+++.||+|+++.
T Consensus       386 ~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~  465 (479)
T PRK10077        386 WVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTL  465 (479)
T ss_pred             HHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhccCccHHHHHHHHHHHHHHHHHhccccCCCCCH
Confidence            889999999999999999999999999999987776544      56777788888888888888888888999999999


Q ss_pred             HHHHHHHhCCC
Q 008137          550 EEVEKMLETGF  560 (576)
Q Consensus       550 ~~~~~~~~~~~  560 (576)
                      +|.++..+++.
T Consensus       466 ~~~~~~~~~~~  476 (479)
T PRK10077        466 EEMEALWEPET  476 (479)
T ss_pred             HHHHHHHhhcc
Confidence            98888775543

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=100.00  E-value=2.8e-39  Score=353.95  Aligned_cols=442  Identities=21%  Similarity=0.276  Sum_probs=315.1

Q ss_pred             HHhhchhhHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhh-cc-chhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCc
Q 008137           19 NIVWTTPYIMKLALSAGIGGLLFGYDTGVISGALLYIKEDF-RD-VEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGR   96 (576)
Q Consensus        19 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~-~~-~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Gr   96 (576)
                      ++.+..+++++.+.+++++.+.+++|...++.+.|.+.+++ +. ........+++.+.+.++..++++++|+++||+||
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~Gr   85 (502)
T TIGR00887         6 DTAPFGWQHFRAIVIAGVGFFTDSYDLFCISLVTKMLGYVYYHGKGPLPSSVSAAVNGSASIGTLAGQLFFGWLADKLGR   85 (502)
T ss_pred             hccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            34556677888889999999999999999999999987753 21 11122234899999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHhcch------HHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHH
Q 008137           97 KISLLGADVLFFIGAIIMAIAPQ------PWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQF  170 (576)
Q Consensus        97 r~~~~~~~~~~~i~~~~~~~~~~------~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~  170 (576)
                      |+++.++.+++.+++++++++++      ++.++++|+++|++.|+..+....+++|++|+++|++++++.+....+|.+
T Consensus        86 r~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~  165 (502)
T TIGR00887        86 KRVYGMELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGIL  165 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999876      789999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcC----------------------CCchhHHHHHHhHHHHHHHHHHHhhccCChhHHhhcCCHH-HHHHHH
Q 008137          171 LAYLINLAFTK----------------------APGTWRWMLGVAGLPAVVQFGLMMMLPESPRWLYRQNKVD-EARAIL  227 (576)
Q Consensus       171 l~~~l~~~l~~----------------------~~~~Wr~~f~v~~~~~~~~~~~~~~l~esp~~l~~~~~~~-~~~~~l  227 (576)
                      +++.++..+..                      ...+||++|.+.++++++.++.++++||||+|+..+++.+ ++++.+
T Consensus       166 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~~~~~lpESpr~l~~~~~~~~~a~~~~  245 (502)
T TIGR00887       166 AGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALYFRLTIPETPRYTADVAKDVEQAASDM  245 (502)
T ss_pred             HHHHHHHHHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHhCcchHHHHHHH
Confidence            99888765431                      0114999999999888887777888999999998777653 455555


Q ss_pred             HHhCCchhhhHHHHHHHHHHHhhhhhhcccchhhHHHhhhhcccchhhh--hhHHHHHHHHHHHHHhhHHHHhhhHHHHH
Q 008137          228 EKIYPADQVEEEVNLLKQSVENEKAEEGLIGKDMISRLKGAFGNKIVRR--GLYAGVTVQVAQQFVGINTVMYYSPTIVQ  305 (576)
Q Consensus       228 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (576)
                      .+.+..+..++ .++.++ .+++  .+     ....+++++++++..++  +..+......+.+...++....+.|.+++
T Consensus       246 ~~~~~~~~~~~-~~~~~~-~~~~--~~-----~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~p~i~~  316 (502)
T TIGR00887       246 SAVLQVKIEAE-PDEVEK-ASTA--VE-----VPKASWSDFFTHFFKWRHGKHLLGTAGSWFLLDIAFYGVNLNQKVILS  316 (502)
T ss_pred             HHHhccccccC-cccccc-hhcc--cc-----chhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHccccccHHHHH
Confidence            54433211100 000000 0000  00     00123455554322111  12222222222233344556667888888


Q ss_pred             hhcCCchhH-----------HHHHHHHHhHHHHHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCc
Q 008137          306 FAGFASKST-----------ALALSLVTSGLNALGSIVSMAFVDKYGRRRLMIVSMFGLSSCLVALAVVFFQAAIHAPTV  374 (576)
Q Consensus       306 ~~~~~~~~~-----------~~~~~~~~~~~~~ig~~~~g~l~dk~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  374 (576)
                      +.+......           ......+..++.+++.++.++++||+|||+++..+..+..++++++........      
T Consensus       317 ~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~~~~~~~------  390 (502)
T TIGR00887       317 AIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLGFAYNHLS------  390 (502)
T ss_pred             HHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHhcc------
Confidence            777643211           011223344556778899999999999999988888777777766654422100      


Q ss_pred             cccccccCCCCCCCCcccccCCCCcccccccccccccccCCCCCCCCCCcccccccccccccccccccccccCCCCcchh
Q 008137          375 SQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAHKGNEYLPGACLIDEKSTDTLCSDEHRTYFISGCPSSFGW  454 (576)
Q Consensus       375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~  454 (576)
                                                                                                    ..
T Consensus       391 ------------------------------------------------------------------------------~~  392 (502)
T TIGR00887       391 ------------------------------------------------------------------------------TH  392 (502)
T ss_pred             ------------------------------------------------------------------------------hh
Confidence                                                                                          00


Q ss_pred             HHHHHHHHHHHHhcCCcccccchhccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHhh----------ccchhhH
Q 008137          455 LAVVFLGAYIITYSPGMGTAPWIVNSEIYPLRYRGVGGGIAAVSNWTSNLIVSLTFLTLTEAL----------GSAGTFL  524 (576)
Q Consensus       455 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~g~~~~~~~~~~l~~~~----------g~~~~~~  524 (576)
                      ..+....+....+..+..+..+.+.+|++|++.|+++.|+.+..++++++++|.+.+.+.+..          +....|+
T Consensus       393 ~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  472 (502)
T TIGR00887       393 GFLAIYVLAQFFANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLE  472 (502)
T ss_pred             HHHHHHHHHHHHHhcCCCchhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHHhhhhhccccccccccccccchHHHH
Confidence            111222222333445666777888899999999999999999999999999999999998743          3445788


Q ss_pred             HHHHHHHHHHHHHHhhccCCCCCCHHHHHH
Q 008137          525 LFAGFSLLGLVAIYLLVPETKGLAFEEVEK  554 (576)
Q Consensus       525 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  554 (576)
                      +++++++++.+.. +++|||+++++||+++
T Consensus       473 i~~~~~~~~~i~~-~~lpEt~~~~leei~~  501 (502)
T TIGR00887       473 IFALFMFLGILFT-LLIPETKGKSLEELSG  501 (502)
T ss_pred             HHHHHHHHHHHHh-eEeccCCCCCHHhhhC
Confidence            8888888776654 6789999999887754

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=100.00  E-value=1.8e-38  Score=348.23  Aligned_cols=457  Identities=44%  Similarity=0.719  Sum_probs=370.0

Q ss_pred             hhhHHHHHHHHHHHHHhhhhh--hhhHHHHHHHHHHhhccchhhh----HHHHHHHHHHHHHHHHHHHHHHHhhhccCch
Q 008137           24 TPYIMKLALSAGIGGLLFGYD--TGVISGALLYIKEDFRDVEKKT----WLQELIVSMAVAGAIFGAGFGGWINDRFGRK   97 (576)
Q Consensus        24 ~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~----~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr   97 (576)
                      ++..........++.+..+++  ....+++...+.++........    ...+++.+...++..+++++.|+++|++|||
T Consensus        40 ~~~~~~~~~~~~~~~~~fg~~g~~g~~s~~~~~~~~~~~~~~~~~~~~~~~~s~~~s~~~lga~~g~l~~g~l~d~~GRk  119 (513)
T KOG0254|consen   40 SPFVILLALVAALGGLLFGYDGDIGGISGALDFLQRFASLYDLSTGEYSVRQGLLTSILNLGALVGSLLAGRLGDRIGRK  119 (513)
T ss_pred             ceehHHHHHHHHHHHHHhCcccccccchhhHHHHHhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence            345556666777888888886  6677777777777544322222    2348999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHH
Q 008137           98 ISLLGADVLFFIGAIIMAIAPQPWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINL  177 (576)
Q Consensus        98 ~~~~~~~~~~~i~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~  177 (576)
                      +.++++.+++.++++++++++|+++++++|+++|+|.|+.....+.|++|..|++.||...+..+....+|..+++.++.
T Consensus       120 ~~l~~~~~~~~iG~ii~~~a~~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~~~~~~  199 (513)
T KOG0254|consen  120 KTLLLAVVLFLIGAIIIALAPSWYQLIVGRILTGLGVGGASVLAPVYISEIAPAHIRGTLVSLYQLFITIGILLGYCINY  199 (513)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccchhhhhhcchhhHhhcCChhhhHHHHHHHHHHHHHHHHHHHHHhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999977776


Q ss_pred             HhcCCCchhHHHHHHhHHHHHHHHHHHhhccCChhHHhhcCCHHHHHHHHHHhCCc--hhhhHHHHHHHHHHHhhhhhhc
Q 008137          178 AFTKAPGTWRWMLGVAGLPAVVQFGLMMMLPESPRWLYRQNKVDEARAILEKIYPA--DQVEEEVNLLKQSVENEKAEEG  255 (576)
Q Consensus       178 ~l~~~~~~Wr~~f~v~~~~~~~~~~~~~~l~esp~~l~~~~~~~~~~~~l~~i~~~--~~~~~~~~~~~~~~~~~~~~~~  255 (576)
                      ...+...+||.++.+..+++++..+..+++||+|+|+.++++.+++++.+.++++.  .+...+.+........+.....
T Consensus       200 ~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~~pesp~~L~~~g~~~~a~~~l~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~  279 (513)
T KOG0254|consen  200 GTSKVYAGWRIPLGLALIPAVILALGMLFLPESPRWLIEKGRLEEAKRSLKRLRGLSPEDVEVELELLKIKLLVEAEVAE  279 (513)
T ss_pred             hhccCCccHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHcCChHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhhhccc
Confidence            66543124999999999999998888888999999999999999999999999883  3334444333311111111100


Q ss_pred             ccchhhHHHhhhhcccchhhhhhHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcCCchhHHHHHHHHHhHHHHHHHHHHHH
Q 008137          256 LIGKDMISRLKGAFGNKIVRRGLYAGVTVQVAQQFVGINTVMYYSPTIVQFAGFASKSTALALSLVTSGLNALGSIVSMA  335 (576)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~  335 (576)
                      .  +   ....++++ +..+++.++...+..++|+.+++...+|.+.+++..+..+..  .....+.++..+++..++.+
T Consensus       280 ~--~---~~~~~l~~-~~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~~g~~~~~--~~~~~~~~~v~~~~t~~~~~  351 (513)
T KOG0254|consen  280 G--K---ASWGELFS-PKVRKRLIIGLLLQLFQQLTGINYVFYYSTTIFKSAGLKSDT--FLASIILGVVNFLGTLVATY  351 (513)
T ss_pred             c--c---ccHHHhcC-cchHHHHHHHHHHHHHHHHhCCceEEeehHHHHHhcCCCCch--HHHHHHHHHHHHHHHHHHHH
Confidence            0  0   12333444 667888888999999999999999999999999999886554  44556667778888899999


Q ss_pred             hhcccCChHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccccccCCCCCCCCcccccCCCCcccccccccccccccCC
Q 008137          336 FVDKYGRRRLMIVSMFGLSSCLVALAVVFFQAAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAH  415 (576)
Q Consensus       336 l~dk~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  415 (576)
                      +.||+|||++++.+...+.++.++++........+.                                            
T Consensus       352 lvd~~gRr~lll~s~~~m~~~~~~~~~~~~~~~~~~--------------------------------------------  387 (513)
T KOG0254|consen  352 LVDRFGRRKLLLFGAAGMSICLVILAVVGVFALYYP--------------------------------------------  387 (513)
T ss_pred             HHHHhccHHHHHHhHHHHHHHHHHHHHHHHHhccCC--------------------------------------------
Confidence            999999999999999999999999888766433210                                            


Q ss_pred             CCCCCCCCcccccccccccccccccccccccCCCCcchhHHHHHHHHHHHHhcCCcccccchhccccccccccccchhHH
Q 008137          416 KGNEYLPGACLIDEKSTDTLCSDEHRTYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEIYPLRYRGVGGGIA  495 (576)
Q Consensus       416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~~~g~~  495 (576)
                                                     ++.....+..++..+++...+..+.+++.|.+.+|++|.+.|+.+.++.
T Consensus       388 -------------------------------~~~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~r~~~~s~~  436 (513)
T KOG0254|consen  388 -------------------------------NSSKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRLRSKGASLA  436 (513)
T ss_pred             -------------------------------CcccchhHHHHHHHHHHHHHHhcccccchhhhhhccCcHhHHhhhHHHH
Confidence                                           0223446888999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHH-HHHhhccCCCCCCHHHHHHHHhCCCCcc
Q 008137          496 AVSNWTSNLIVSLTFLTLTEALGSAGTFLLFAGFSLLGLV-AIYLLVPETKGLAFEEVEKMLETGFKPS  563 (576)
Q Consensus       496 ~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  563 (576)
                      ...+++.+.+....+..+.+..+....|.++++.+.+... .+++++||||++++||+++..++.....
T Consensus       437 ~~~n~~~~~~v~~~~~~~~~~~~~~~~f~~f~~~~~~~~~~fv~~~~pETkg~sleei~~~~~~~~~~~  505 (513)
T KOG0254|consen  437 VAVNWLWNFLISFFFPFITEALGIGGTFGYFGGICLLSLIIFVFFFVPETKGLTLEEINELFEEGIKPW  505 (513)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHheEEcccCCCCcHHHHHHHHHcCCchh
Confidence            9999999998887777777665545577777777777776 7888999999999999999877654433

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=100.00  E-value=9.4e-38  Score=336.92  Aligned_cols=442  Identities=39%  Similarity=0.674  Sum_probs=325.6

Q ss_pred             hhHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhccc--------hhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCc
Q 008137           25 PYIMKLALSAGIGGLLFGYDTGVISGALLYIKEDFRDV--------EKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGR   96 (576)
Q Consensus        25 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~--------~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Gr   96 (576)
                      +..+....++.++.++..++...+++.+|.+..+++.+        ..+.   +++.+++.++..++++++|+++||+||
T Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~i~~~~~g~l~d~~gr  100 (481)
T TIGR00879        24 WKVALLSLIAAIGGLMFGYDTGVIGGALALPAFEFKFTSANSDSYSSSLW---GLVVSIFLVGGFIGALFAGWLSDRFGR  100 (481)
T ss_pred             HHHHHHHHHHHHHHHhcccccchhhhhhhcHHHHHhcCCcccCCCChhHH---HHHHHHHHHHHHHHHHHhhHhhhhhhh
Confidence            34444555566677888999999999999999998876        4455   999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHhc---chHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHH
Q 008137           97 KISLLGADVLFFIGAIIMAIA---PQPWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAY  173 (576)
Q Consensus        97 r~~~~~~~~~~~i~~~~~~~~---~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~  173 (576)
                      |++++++.+++.++.+++.+.   .+++.++++|+++|++.+...+....+++|++|+++|++++++.+.+..+|.++++
T Consensus       101 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~  180 (481)
T TIGR00879       101 KKSLLIIALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAY  180 (481)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHH
Confidence            999999999999999998654   34568999999999999999999999999999999999999999999999999999


Q ss_pred             HHH---HHhcCCCchhHHHHHHhHHHHHHHHHHHhhccCChhHHhhcCCHHHHHHHHHHhCCchhhhHHHHHHHHHHHhh
Q 008137          174 LIN---LAFTKAPGTWRWMLGVAGLPAVVQFGLMMMLPESPRWLYRQNKVDEARAILEKIYPADQVEEEVNLLKQSVENE  250 (576)
Q Consensus       174 ~l~---~~l~~~~~~Wr~~f~v~~~~~~~~~~~~~~l~esp~~l~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~  250 (576)
                      +++   ....+..+ ||+.|++.++..++.++..+++||+|++...+++.++.++...+....++...+...........
T Consensus       181 ~~~~~~~~~~~~~~-w~~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (481)
T TIGR00879       181 GFGSGKVSLNNTLG-WRIPLGLQLIPAGLLFLGLFFLPESPRWLVGKGRVEEARKSLARLRGTSGEDKELLDELELIDIK  259 (481)
T ss_pred             HHHHHhhcCCCCcc-HHHHHHHHHHHHHHHHHHHhcCCCChHHHHHcCChHHHHHHHHHHhCCCCCcHHHHHHHHHHHHH
Confidence            998   65555555 99999997777777666677889999877666665555544444332221111111100000000


Q ss_pred             hhhhcccchhhHHHhhhhcccchhhhhhHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcCCchhHHHHHHHHHhHHHHHHH
Q 008137          251 KAEEGLIGKDMISRLKGAFGNKIVRRGLYAGVTVQVAQQFVGINTVMYYSPTIVQFAGFASKSTALALSLVTSGLNALGS  330 (576)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~  330 (576)
                      ...+....+.......+..++  .+.+.++...+..+..........++.|.+.++.+. +....+.......++.+++.
T Consensus       260 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~  336 (481)
T TIGR00879       260 RSIEKRSVQPSWGSLFSSTRR--IRRRLFLGVVLQWFQQFTGINAIMYYSPTIFENAGV-STDHAFLVSIIVGAVNFAFT  336 (481)
T ss_pred             HHHHHhhccccHHHHHhcCch--hHHHHHHHHHHHHHHHHhCCeehHHHHHHHHHHcCC-CchHHHHHHHHHHHHHHHHH
Confidence            000000000001222222222  234445555555555555566677888888888877 44677777788888899999


Q ss_pred             HHHHHhhcccCChHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccccccCCCCCCCCcccccCCCCcccccccccccc
Q 008137          331 IVSMAFVDKYGRRRLMIVSMFGLSSCLVALAVVFFQAAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKC  410 (576)
Q Consensus       331 ~~~g~l~dk~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  410 (576)
                      ++.++++||++||+.+..++++.+++++++.........+..                                      
T Consensus       337 ~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------------  378 (481)
T TIGR00879       337 FVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGSS--------------------------------------  378 (481)
T ss_pred             HHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcccCCcc--------------------------------------
Confidence            999999999999999988887777776666543221100000                                      


Q ss_pred             cccCCCCCCCCCCcccccccccccccccccccccccCCCCcchhHHHHHHHHHHHHhcCCcccccchhcccccccccccc
Q 008137          411 GFCAHKGNEYLPGACLIDEKSTDTLCSDEHRTYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEIYPLRYRGV  490 (576)
Q Consensus       411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~  490 (576)
                                                             ....+..+....++..+++.+..+....+..|.+|++.|++
T Consensus       379 ---------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~  419 (481)
T TIGR00879       379 ---------------------------------------KSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPK  419 (481)
T ss_pred             ---------------------------------------cchhHHHHHHHHHHHHHHHccccCeehhhhhccCChHHHHH
Confidence                                                   00023334445555566666666777788899999999999


Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHhhccCCCCCCHH
Q 008137          491 GGGIAAVSNWTSNLIVSLTFLTLTEALGSAGTFLLFAGFSLLGLVAIYLLVPETKGLAFE  550 (576)
Q Consensus       491 ~~g~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  550 (576)
                      +.|+.+...+++++++|.+.+.+.+..|+...|++.+++++++.++.+++.||+++++.+
T Consensus       420 ~~~~~~~~~~lg~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~~~~~~~~~~~  479 (481)
T TIGR00879       420 GISIAVAANWLANFIVGFLFPTMLESIGVGGVFIFFGGLNVLGLIFVYFFLPETKGRTLE  479 (481)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCccceehhHHHHHHHHHHHHheecccCCCCChh
Confidence            999999999999999999999999999999999999999999888888888988876654

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=100.00  E-value=1.7e-35  Score=323.12  Aligned_cols=403  Identities=17%  Similarity=0.149  Sum_probs=276.7

Q ss_pred             HHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhccchhhh--HHHHH-HHHHHHHHHHHHHHHHHHhhhccCchHHHHHHH
Q 008137           28 MKLALSAGIGGLLFGYDTGVISGALLYIKEDFRDVEKKT--WLQEL-IVSMAVAGAIFGAGFGGWINDRFGRKISLLGAD  104 (576)
Q Consensus        28 ~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~--~~~g~-i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~  104 (576)
                      ++.+.+.+++.+++++|...++...|.+.++|+.+.++.  +...+ ..++.++++.+|++++|+++||+|||+++.++.
T Consensus        15 ~~~~~~~~~g~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~   94 (490)
T PRK10642         15 RKAITAASLGNAMEWFDFGVYGFVAYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKYGRQKILAITI   94 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence            356677788999999999999999999999997544332  11122 258889999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcchHHH--------HHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHH
Q 008137          105 VLFFIGAIIMAIAPQPWV--------IILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLIN  176 (576)
Q Consensus       105 ~~~~i~~~~~~~~~~~~~--------l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~  176 (576)
                      ++++++++++++++|+++        ++++|+++|++.|+.++.+.++++|++|+++|+++.++.+.+..+|..+++.+.
T Consensus        95 ~l~~i~~~~~a~~~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~G~~lg~~~~  174 (490)
T PRK10642         95 VIMSISTFCIGLIPSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMGSWLDFGSIAGFVLGAGVV  174 (490)
T ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999875        889999999999999999999999999999999999999988888888887665


Q ss_pred             HHhcC--------CCchhHHHHHHhHHHHHHHHHHHhhccCChhHHhhcCCHHHHHHHHHHhCCchhhhHHHHHHHHHHH
Q 008137          177 LAFTK--------APGTWRWMLGVAGLPAVVQFGLMMMLPESPRWLYRQNKVDEARAILEKIYPADQVEEEVNLLKQSVE  248 (576)
Q Consensus       177 ~~l~~--------~~~~Wr~~f~v~~~~~~~~~~~~~~l~esp~~l~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~  248 (576)
                      ..+..        .. +||++|++.++++++.+++...+||+|++...+++.++..+                   +.. 
T Consensus       175 ~~~~~~~~~~~~~~~-gWR~~f~i~~~~~l~~~~~~~~~~esp~~~~~~~~~~~~~~-------------------~~~-  233 (490)
T PRK10642        175 VLISTIVGEANFLDW-GWRIPFFIALPLGIIGLYLRHALEETPAFQQHVDKLEQGDR-------------------EGL-  233 (490)
T ss_pred             HHHHHhcCHHHhcCc-cHHHHHHHHHHHHHHHHHHHHcCCCChhHHHHHHhhhhhcc-------------------ccc-
Confidence            54321        34 49999999887777666666778999886532211110000                   000 


Q ss_pred             hhhhhhcccchhhHHHhhhhcccchhhhhhHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcCCchhHHHHHHHHHhHHHHH
Q 008137          249 NEKAEEGLIGKDMISRLKGAFGNKIVRRGLYAGVTVQVAQQFVGINTVMYYSPTIVQFAGFASKSTALALSLVTSGLNAL  328 (576)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  328 (576)
                        .+.++       .++++.+++  .++...... ...+.....++.+..|.|.++++..+.+............++.++
T Consensus       234 --~~~~~-------~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~  301 (490)
T PRK10642        234 --QDGPK-------VSFKEIATK--HWRSLLTCI-GLVIATNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLF  301 (490)
T ss_pred             --ccccc-------CCHHHHHHH--hHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence              00000       122333332  122222222 222233345566777889988655333555566666677788889


Q ss_pred             HHHHHHHhhcccCChHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccccccCCCCCCCCcccccCCCCcccccccccc
Q 008137          329 GSIVSMAFVDKYGRRRLMIVSMFGLSSCLVALAVVFFQAAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKA  408 (576)
Q Consensus       329 g~~~~g~l~dk~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  408 (576)
                      +.++.|+++||+|||+.+..+.++..++.+.+......                                          
T Consensus       302 ~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~------------------------------------------  339 (490)
T PRK10642        302 VQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILINS------------------------------------------  339 (490)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhC------------------------------------------
Confidence            99999999999999998877765443332221111110                                          


Q ss_pred             cccccCCCCCCCCCCcccccccccccccccccccccccCCCCcchhHHHHHHHHHHHHhcCCcccccchhcccccccccc
Q 008137          409 KCGFCAHKGNEYLPGACLIDEKSTDTLCSDEHRTYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEIYPLRYR  488 (576)
Q Consensus       409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r  488 (576)
                                                                ......++...+..++++... +....+..|++|++.|
T Consensus       340 ------------------------------------------~~~~~~~~~~~~~g~~~~~~~-g~~~~~~~~~~p~~~R  376 (490)
T PRK10642        340 ------------------------------------------NVIGLIFAGLLMLAVILNCFT-GVMASTLPAMFPTHIR  376 (490)
T ss_pred             ------------------------------------------CCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHCCCccc
Confidence                                                      000122222222222222222 2334566799999999


Q ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHHHhhc-cchhhHHHHHHHHHHHHHHHhhccCCCCCCH
Q 008137          489 GVGGGIAAVSNWTSNLIVSLTFLTLTEALG-SAGTFLLFAGFSLLGLVAIYLLVPETKGLAF  549 (576)
Q Consensus       489 g~~~g~~~~~~~~g~~~~~~~~~~l~~~~g-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  549 (576)
                      |++.|+.+....+++.++|.+.+.+.+..+ ++.++++..+.++++++.. +++||++++..
T Consensus       377 g~~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~~-~~~pes~~~~~  437 (490)
T PRK10642        377 YSALAAAFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLITG-VTMKETANRPL  437 (490)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHH-HHhccccCCCC
Confidence            999998766677888899999999888654 4555666666666666554 45688866533

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=100.00  E-value=5.3e-36  Score=303.91  Aligned_cols=407  Identities=18%  Similarity=0.128  Sum_probs=317.8

Q ss_pred             chhhHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHH
Q 008137           23 TTPYIMKLALSAGIGGLLFGYDTGVISGALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLG  102 (576)
Q Consensus        23 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~  102 (576)
                      -+++|+.++..+.+++...++.+..++.+.|.+.++.+.+..+.   |++.+.+.+.+.++-.+.|.++||.+.|+.+.+
T Consensus        23 y~~~r~qif~~~fiGYa~fYl~RknF~~a~p~l~e~~~lsk~~l---G~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~   99 (448)
T COG2271          23 YKRWRIQIFLSIFIGYAAFYLTRKNFNLAMPALIEDGGLSKTQL---GILGSAFSITYGVSKFVMGVLSDRSNPRYFMAF   99 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHhhccHHHHHhcCCCHHHH---HHHHHHHHHHHHHHHHHhhhhcccCCCceeehH
Confidence            35678889999999999999999999999999999999999998   999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhcchHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHH--HHhc
Q 008137          103 ADVLFFIGAIIMAIAPQPWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLIN--LAFT  180 (576)
Q Consensus       103 ~~~~~~i~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~--~~l~  180 (576)
                      ++++.++.+++++++++.+.+.++-++.|..+|..+|.+...++.|+|++|||+..++++++-++|..+.+++.  +.+.
T Consensus       100 gLilsai~nil~Gfs~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~~  179 (448)
T COG2271         100 GLILSAIVNILFGFSPSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFA  179 (448)
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999  7777


Q ss_pred             CCCchhHHHHHHhHHHHHHHHHH-HhhccCChhHHhhcCCHHHHHHHHHHhCCchhhhHHHHHHHHHHHhhhhhhcccch
Q 008137          181 KAPGTWRWMLGVAGLPAVVQFGL-MMMLPESPRWLYRQNKVDEARAILEKIYPADQVEEEVNLLKQSVENEKAEEGLIGK  259 (576)
Q Consensus       181 ~~~~~Wr~~f~v~~~~~~~~~~~-~~~l~esp~~l~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (576)
                      ...+ ||..|++.++++++..+. ++.++|+|+..-.+.- ++.+.                +..+..+++++.+.    
T Consensus       180 ~~~~-w~~~f~~pgiiaiival~~~~~~rd~Pqs~GLP~i-e~~~~----------------d~~e~~~~~~~~~~----  237 (448)
T COG2271         180 FHGG-WRAAFYFPGIIAIIVALILLFLLRDRPQSEGLPPI-EEYRG----------------DPLEIYEEEKENEG----  237 (448)
T ss_pred             hccc-hhHHHHHHHHHHHHHHHHHHHHhCCCccccCCCCH-HHhhc----------------CchhhhhhhccCCC----
Confidence            7776 999999999998876655 6668888863221111 11000                00000000111110    


Q ss_pred             hhHHHhhhhcccchhhhhhHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcCCchhHHHHHHHHHhHHHHHHHHHHHHhhcc
Q 008137          260 DMISRLKGAFGNKIVRRGLYAGVTVQVAQQFVGINTVMYYSPTIVQFAGFASKSTALALSLVTSGLNALGSIVSMAFVDK  339 (576)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dk  339 (576)
                         -+.++.+.+..++++.++.+.+..++.+..-+.+..|.|.|+.+..+.+...+......+-.++++|+++.|+++||
T Consensus       238 ---ls~~~i~~~YVL~Nk~iW~la~a~vfvYivR~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDk  314 (448)
T COG2271         238 ---LTAWQIFVKYVLKNKLIWLLALANVFVYVVRYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDK  314 (448)
T ss_pred             ---ccHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence               12334444455555667777777777788889999999999999888899999999999999999999999999999


Q ss_pred             c--CChHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccccccCCCCCCCCcccccCCCCcccccccccccccccCCCC
Q 008137          340 Y--GRRRLMIVSMFGLSSCLVALAVVFFQAAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAHKG  417 (576)
Q Consensus       340 ~--grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  417 (576)
                      +  |||..+.+.+.+.....++..+. .                                                    
T Consensus       315 lfkgrR~p~~~i~~~~i~~~~~~~w~-~----------------------------------------------------  341 (448)
T COG2271         315 LFKGRRGPMALIFMLLITASLVLYWL-A----------------------------------------------------  341 (448)
T ss_pred             hcccccchHHHHHHHHHHHHHHHHHc-C----------------------------------------------------
Confidence            7  67776654443333322222221 1                                                    


Q ss_pred             CCCCCCcccccccccccccccccccccccCCCCcchhHHHHHHHHHHHHhcCCcccccchhccccccccccccchhHHHH
Q 008137          418 NEYLPGACLIDEKSTDTLCSDEHRTYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEIYPLRYRGVGGGIAAV  497 (576)
Q Consensus       418 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~~~g~~~~  497 (576)
                                                     |.. ++.....+.....++..+..-+.-..+.|..|.+..|++.|+...
T Consensus       342 -------------------------------~~~-~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~AaGtA~Gf~Gl  389 (448)
T COG2271         342 -------------------------------PNG-SYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPKKAAGTATGFVGL  389 (448)
T ss_pred             -------------------------------CCc-cHHHHHHHHHHHHHHHhhHHHHHHHHHhccccHhhccchhchhhh
Confidence                                           111 122233333233333233333444567899999999999999999


Q ss_pred             HHHH-HHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHhhcc
Q 008137          498 SNWT-SNLIVSLTFLTLTEALGSAGTFLLFAGFSLLGLVAIYLLVP  542 (576)
Q Consensus       498 ~~~~-g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~  542 (576)
                      ++.+ |.+.+....+.+.|.+||...|+++.+.++++.++.+....
T Consensus       390 f~Yl~Ga~~a~~~~g~i~d~~gW~g~Fi~~~~~a~l~~lll~~~~~  435 (448)
T COG2271         390 FAYLIGAALAGLPLGYIADTWGWDGGFIVLSIAALLAILLLLPVWN  435 (448)
T ss_pred             HHHHhhHHhcCCcceeeEecCCCcchHHHHHHHHHHHHHHHHHHHh
Confidence            9999 88899999999999999999999998888887776655443

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=100.00  E-value=3.2e-34  Score=308.10  Aligned_cols=383  Identities=21%  Similarity=0.220  Sum_probs=260.5

Q ss_pred             hHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhc---cchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHH
Q 008137           26 YIMKLALSAGIGGLLFGYDTGVISGALLYIKEDFR---DVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLG  102 (576)
Q Consensus        26 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~---~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~  102 (576)
                      ++++.+...+++.+++++|+..++.+.|.+.++++   .+..+..+.+.+.+..+++..++++++|+++||+|||+++.+
T Consensus        19 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~Grr~~l~~   98 (432)
T PRK10406         19 RRIWAIVGASSGNLVEWFDFYVYSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKHGRKKSMLI   98 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence            45566777788999999999999999999999985   344433233455566677777999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhcchHH--------HHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHH
Q 008137          103 ADVLFFIGAIIMAIAPQPW--------VIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYL  174 (576)
Q Consensus       103 ~~~~~~i~~~~~~~~~~~~--------~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~  174 (576)
                      +.++++++++++++++++.        .++++|+++|++.|+.++.+.++++|++|+++|+++.++.+.+...|.++++.
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~~  178 (432)
T PRK10406         99 SVCMMCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLALL  178 (432)
T ss_pred             HHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999864        58999999999999999999999999999999999999999888888888887


Q ss_pred             HHHHhcC--------CCchhHHHHHHhHHHHHHHHHHHhhccCChhHHhhcCCHHHHHHHHHHhCCchhhhHHHHHHHHH
Q 008137          175 INLAFTK--------APGTWRWMLGVAGLPAVVQFGLMMMLPESPRWLYRQNKVDEARAILEKIYPADQVEEEVNLLKQS  246 (576)
Q Consensus       175 l~~~l~~--------~~~~Wr~~f~v~~~~~~~~~~~~~~l~esp~~l~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~  246 (576)
                      +...+..        .. +||++|++.++++++.++....+||+|++..++.                            
T Consensus       179 ~~~~~~~~~~~~~~~~~-gWr~~F~i~~~~~ll~~~~~~~~~e~~~~~~~~~----------------------------  229 (432)
T PRK10406        179 VVVVLQQTLEDAELREW-GWRIPFALGAVLAVVALWLRRQLDETSQQETRAL----------------------------  229 (432)
T ss_pred             HHHHHHHhCCHHHHhcc-chHHHHHHHHHHHHHHHHHHhcCCCCchHHHhhh----------------------------
Confidence            6655432        33 4999999988888776666666788764311000                            


Q ss_pred             HHhhhhhhcccchhhHHHhhhhcccchhhhhhHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcCCchhHHHHHHHHHhHHH
Q 008137          247 VENEKAEEGLIGKDMISRLKGAFGNKIVRRGLYAGVTVQVAQQFVGINTVMYYSPTIVQFAGFASKSTALALSLVTSGLN  326 (576)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  326 (576)
                          + +.        .++++.++++..    +.......+.....++.+..|.|.++++..+.+..+.+.......+..
T Consensus       230 ----~-~~--------~~~~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~  292 (432)
T PRK10406        230 ----K-EA--------GSLKGLWRNRRA----FIMVLGFTAAGSLCFYTFTTYMQKYLVNTAGMHANVASGIMTAALFVF  292 (432)
T ss_pred             ----c-cc--------ccHHHHHhhHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence                0 00        122334433322    222222222223445667778898887654446666666666666777


Q ss_pred             HHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccccccCCCCCCCCcccccCCCCcccccccc
Q 008137          327 ALGSIVSMAFVDKYGRRRLMIVSMFGLSSCLVALAVVFFQAAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCL  406 (576)
Q Consensus       327 ~ig~~~~g~l~dk~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  406 (576)
                      .++.++.|+++||++||+.+....++..+..+.+...... .                                      
T Consensus       293 ~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~-~--------------------------------------  333 (432)
T PRK10406        293 MLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSALQN-V--------------------------------------  333 (432)
T ss_pred             HHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHc-C--------------------------------------
Confidence            8888899999999999988766555433332222111110 0                                      


Q ss_pred             cccccccCCCCCCCCCCcccccccccccccccccccccccCCCCcchhHHHHHHHHHHHHhcCCcccccchhcccccccc
Q 008137          407 KAKCGFCAHKGNEYLPGACLIDEKSTDTLCSDEHRTYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEIYPLR  486 (576)
Q Consensus       407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~  486 (576)
                                                                  +..+..+..+.+.....+ ...+..+.+.+|.+|++
T Consensus       334 --------------------------------------------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~e~fp~~  368 (432)
T PRK10406        334 --------------------------------------------SSPYAAFGLVMCALLIVS-FYTSISGILKAEMFPAQ  368 (432)
T ss_pred             --------------------------------------------CcHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHCCCC
Confidence                                                        001111111111111111 11224456789999999


Q ss_pred             ccccchhHHHHHHHH-HHHHHHHHHHHHHHhhccc-hhhHHHHHHHHHHHHHHHh
Q 008137          487 YRGVGGGIAAVSNWT-SNLIVSLTFLTLTEALGSA-GTFLLFAGFSLLGLVAIYL  539 (576)
Q Consensus       487 ~rg~~~g~~~~~~~~-g~~~~~~~~~~l~~~~g~~-~~~~~~~~~~~i~~~~~~~  539 (576)
                      .|++++|+.+..+++ .+...|.+.+. .+..|.+ ..+++.+++.+++.+..++
T Consensus       369 ~r~t~~g~~~~~g~~~~g~~~p~~~~~-l~~~g~~~~~~~~~~~~~~i~~~~~~~  422 (432)
T PRK10406        369 VRALGVGLSYAVANALFGGSAEYVALS-LKSIGMETAFFWYVTLMAVVAFLVSLM  422 (432)
T ss_pred             ccchhhhHHHHHHHHHHHhHHHHHHHH-HHHhCCCcHHHHHHHHHHHHHHHHHHH
Confidence            999999999887665 34457777774 4555643 3455555666666555544

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=100.00  E-value=5.2e-35  Score=317.37  Aligned_cols=414  Identities=14%  Similarity=-0.002  Sum_probs=290.2

Q ss_pred             hHHHHHHHhhchhhHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008137           13 EFTECWNIVWTTPYIMKLALSAGIGGLLFGYDTGVISGALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWIND   92 (576)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~d   92 (576)
                      +.++...+....+..+.++.+++++.++.+.++..++...|.+.+|++.+..+.   |++.+++.+++.+++++.|+++|
T Consensus        13 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~y~~r~~~~~~~~~i~~~~~~s~~~~---g~~~s~~~~~~~~~~~~~G~l~D   89 (467)
T PRK09556         13 DLPLEVQRKMWFKPFMQSYLVVFIGYLTMYLIRKNFKAAQNDMISTYGLSTTEL---GMIGLGFSITYGVGKTLVGYYAD   89 (467)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHhcCCCHHHH---HHHHHHHHHHHHHHHhhhhhHhh
Confidence            334443444445567778888889999999999999999999999999998888   99999999999999999999999


Q ss_pred             ccCchHHHHHHHHHHHHHHHHHHh-----cchHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHH
Q 008137           93 RFGRKISLLGADVLFFIGAIIMAI-----APQPWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITG  167 (576)
Q Consensus        93 r~Grr~~~~~~~~~~~i~~~~~~~-----~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~  167 (576)
                      |+|||+++.++.+++++++++.++     +++++.+++.|+++|++.+...+...++++||+|+++|++++++++.+.++
T Consensus        90 r~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~l  169 (467)
T PRK09556         90 GKNTKQFLPFLLILSAICMLGFGASLGSGSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNL  169 (467)
T ss_pred             ccCccchHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccch
Confidence            999999999998888888776665     689999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcCC--CchhHHHHHHhHHHHHHHHHH-HhhccCChhHHhhcCCHHHHHHHHHHhCCchhhhHHHHHHH
Q 008137          168 GQFLAYLINLAFTKA--PGTWRWMLGVAGLPAVVQFGL-MMMLPESPRWLYRQNKVDEARAILEKIYPADQVEEEVNLLK  244 (576)
Q Consensus       168 G~~l~~~l~~~l~~~--~~~Wr~~f~v~~~~~~~~~~~-~~~l~esp~~l~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~  244 (576)
                      |.++++++..++...  .++||..|.+.++++++..+. +++.+++|+......+ ++   .   .....  ..+     
T Consensus       170 G~~l~~~i~~~~~~~~~~~~~~~~f~~~g~~~~~~~i~~~~~~~~~p~~~~~~~~-~~---~---~~~~~--~~~-----  235 (467)
T PRK09556        170 GGAGAGGVALWGANYFFDGHVIGMFIFPSIIALIIGFIGLRYGSDSPEELGWGKA-EE---I---FGEPI--SEE-----  235 (467)
T ss_pred             hhhHHHHHHHHHHHhhccCcchhHHHHHHHHHHHHHHHHHHhCCCChhhcCCCCh-hh---c---ccCcc--chh-----
Confidence            999999888766543  224999999988887766555 4455776643211111 00   0   00000  000     


Q ss_pred             HHHHhhhhhhcccchhhHHH-hhhhcccchhhhhhHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcCCchhHHHHHHHHHh
Q 008137          245 QSVENEKAEEGLIGKDMISR-LKGAFGNKIVRRGLYAGVTVQVAQQFVGINTVMYYSPTIVQFAGFASKSTALALSLVTS  323 (576)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (576)
                         ++..+.++.   ...+. .+..++++.     ++...+..++..........|.|.|+++..+.+..+++.......
T Consensus       236 ---~~~~~~~~~---~~~~~~~~~~l~~~~-----~~~~~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~  304 (467)
T PRK09556        236 ---DKETESTDM---TKWQIFVEYVLKNPV-----IWLLCFANIFLYIVRIGIDNWSPVYAFQELGFSKEDAINTFTLFE  304 (467)
T ss_pred             ---hhccccccC---cHHHHHHHHHHcChH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHH
Confidence               000000000   00011 112344433     333333344444445667888999987655557777778878888


Q ss_pred             HHHHHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccccccCCCCCCCCcccccCCCCccccc
Q 008137          324 GLNALGSIVSMAFVDKYGRRRLMIVSMFGLSSCLVALAVVFFQAAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCM  403 (576)
Q Consensus       324 ~~~~ig~~~~g~l~dk~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  403 (576)
                      ++.+++.+++|+++||++||+.+.....+..++..++.+...                                      
T Consensus       305 ~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~~~~~~~~~--------------------------------------  346 (467)
T PRK09556        305 IGALVGSLLWGWLSDLANGRRALVACIALALIIFTLGVYQHA--------------------------------------  346 (467)
T ss_pred             HHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHhc--------------------------------------
Confidence            889999999999999999988766544433332222221100                                      


Q ss_pred             ccccccccccCCCCCCCCCCcccccccccccccccccccccccCCCCcchhHHHHHHHHHHHHhcCCcccccchhccccc
Q 008137          404 DCLKAKCGFCAHKGNEYLPGACLIDEKSTDTLCSDEHRTYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEIY  483 (576)
Q Consensus       404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~  483 (576)
                                                                     +..+...+..+..+... .+..........|.+
T Consensus       347 -----------------------------------------------~~~~~~~~~~~~~G~~~-~~~~~~~~~~~~~~~  378 (467)
T PRK09556        347 -----------------------------------------------TSEYMYLASLFALGFLV-FGPQLLIGVAAVGFV  378 (467)
T ss_pred             -----------------------------------------------CcHHHHHHHHHHHHHHH-hhHHHHHHHHHHhhc
Confidence                                                           00122222222222211 122112224556999


Q ss_pred             cccccccchhHHHHHHHH-HHHHHHHHHHHHHH------------hhccchhhHHHHHHHHHHHHHHHhh
Q 008137          484 PLRYRGVGGGIAAVSNWT-SNLIVSLTFLTLTE------------ALGSAGTFLLFAGFSLLGLVAIYLL  540 (576)
Q Consensus       484 p~~~rg~~~g~~~~~~~~-g~~~~~~~~~~l~~------------~~g~~~~~~~~~~~~~i~~~~~~~~  540 (576)
                      |++.||++.|+.+..+++ |.+++|.+.|.+.|            ..||...|++..++++++.+..+++
T Consensus       379 p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~  448 (467)
T PRK09556        379 PKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAALDIAAIGCICLMAIV  448 (467)
T ss_pred             chhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhcccccccccccccccChHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999997 77999999999999            5678888988888888876665543

>TIGR00898 2A0119 cation transport protein

Probab=100.00  E-value=2.9e-35  Score=322.46  Aligned_cols=394  Identities=22%  Similarity=0.333  Sum_probs=289.0

Q ss_pred             HHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Q 008137           50 GALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFIGAIIMAIAPQPWVIILGRIF  129 (576)
Q Consensus        50 ~~~~~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~R~l  129 (576)
                      +..|.+.+||+.++++.++.+++.+++.++..++++++|+++||+|||++++++.++.++++++++++++++.++++|++
T Consensus       110 ~~~~~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l  189 (505)
T TIGR00898       110 TFSSTIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFRLL  189 (505)
T ss_pred             cccccEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence            56788999999996666666999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHhHHHHHHHHHHHhhccC
Q 008137          130 VGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFTKAPGTWRWMLGVAGLPAVVQFGLMMMLPE  209 (576)
Q Consensus       130 ~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~Wr~~f~v~~~~~~~~~~~~~~l~e  209 (576)
                      .|++.++..+....++.|++|+++|+++.++.+.+..+|.++++.++..+.    +||+.|++.+++.++..+.++++||
T Consensus       190 ~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~----~wr~~~~~~~i~~~~~~~~~~~~~e  265 (505)
T TIGR00898       190 VGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIP----DWRWLQLAVSLPTFLFFLLSWFVPE  265 (505)
T ss_pred             HHhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhh----HHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            999999999999999999999999999999999999999999999887765    4999999999988887777788999


Q ss_pred             ChhHHhhcCCHHHHHHHHHHhCCchhhhHHHHHHHHHHHhhhhhhcccchhhHHHhhhhcccchhhhhhHHHHHHHHHHH
Q 008137          210 SPRWLYRQNKVDEARAILEKIYPADQVEEEVNLLKQSVENEKAEEGLIGKDMISRLKGAFGNKIVRRGLYAGVTVQVAQQ  289 (576)
Q Consensus       210 sp~~l~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (576)
                      +|+|+..+++.+++.+.+++....+......+......+++...+.     ...+.+++++++.++...+......+.  
T Consensus       266 sp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~~~~~~~~--  338 (505)
T TIGR00898       266 SPRWLISQGRIEEALKILQRIAKINGKKLPAEVLSLSLEKDLSSSK-----KQYSFLDLFRTPNLRKTTLCLMMLWFT--  338 (505)
T ss_pred             ChHHHHHCCCHHHHHHHHHHHHHHcCCCCCHHHHhhhhhhhhhhcc-----CCCcHHHHhCChHHHHHHHHHHHHHHH--
Confidence            9999999998888877766554332211111111100000000000     013456777777666654443332222  


Q ss_pred             HHhhHHHHhhhHHHHHhhcCCchhHHHHHHHHHhHHHHHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008137          290 FVGINTVMYYSPTIVQFAGFASKSTALALSLVTSGLNALGSIVSMAFVDKYGRRRLMIVSMFGLSSCLVALAVVFFQAAI  369 (576)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dk~grr~~~~~~~~~~~~~~~~~~~~~~~~~~  369 (576)
                         .....+..+.+....+. +.   ........+..+++.++.+++.||+|||+.+..+.++.+++++++.....    
T Consensus       339 ---~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~----  407 (505)
T TIGR00898       339 ---TAFSYYGLVLDLGNLGG-NI---YLDLFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPV----  407 (505)
T ss_pred             ---HHHHHHHHhccccccCC-Ch---HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCC----
Confidence               11222222333333333 22   22334456677889999999999999999999888877777665544311    


Q ss_pred             cCCCccccccccCCCCCCCCcccccCCCCcccccccccccccccCCCCCCCCCCcccccccccccccccccccccccCCC
Q 008137          370 HAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAHKGNEYLPGACLIDEKSTDTLCSDEHRTYFISGCP  449 (576)
Q Consensus       370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p  449 (576)
                                                                                                      
T Consensus       408 --------------------------------------------------------------------------------  407 (505)
T TIGR00898       408 --------------------------------------------------------------------------------  407 (505)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CcchhHHHHHHHHHHHHhcCCcccccchhccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHH
Q 008137          450 SSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEIYPLRYRGVGGGIAAVSNWTSNLIVSLTFLTLTEALGSAGTFLLFAGF  529 (576)
Q Consensus       450 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~  529 (576)
                       ...+..+...++..++.. +..+..+.+.+|++|++.|++++|+.++...+|++++|.+.+ + +..+...++++++++
T Consensus       408 -~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~p~i~~-~-~~~~~~~~~~~~~~~  483 (505)
T TIGR00898       408 -DLYFLRTALAVLGKFGIT-SAFQMVYLYTAELYPTVVRNLGVGVCSTMARVGSIISPFLVY-L-GEKWLFLPLVLFGGL  483 (505)
T ss_pred             -CchHHHHHHHHHHHHHHH-HHHHHHHHHhcccccHHHHhhhHhHHHHHHHHHHHHHhHHHH-H-HHHHHhhHHHHHHHH
Confidence             001222222222222222 233456678899999999999999999999999999999998 4 445666788888888


Q ss_pred             HHHHHHHHHhhccCCCCCCHH
Q 008137          530 SLLGLVAIYLLVPETKGLAFE  550 (576)
Q Consensus       530 ~~i~~~~~~~~~~~~~~~~~~  550 (576)
                      ++++.++. +++|||++++++
T Consensus       484 ~~~~~~~~-~~lpet~~~~l~  503 (505)
T TIGR00898       484 ALLAGILT-LFLPETKGVPLP  503 (505)
T ss_pred             HHHHHHHH-HcCcCCCCCCCC
Confidence            88876665 467999987754

>PRK11663 regulatory protein UhpC; Provisional

Probab=100.00  E-value=3.3e-34  Score=308.20  Aligned_cols=408  Identities=13%  Similarity=0.062  Sum_probs=287.9

Q ss_pred             hhHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHH
Q 008137           25 PYIMKLALSAGIGGLLFGYDTGVISGALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGAD  104 (576)
Q Consensus        25 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~  104 (576)
                      ++++.+.....++.+..++++..++..+|.+.+++|.+..+.   +++.+.+.+++.+++++.|++.||+|||+++.++.
T Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~---g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~   95 (434)
T PRK11663         19 YWRRHILITMYLGYALFYFTRKSFNAAMPEMLADLGLSRSDI---GLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGL   95 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhHHHhhHHHHHhcCCCHHHH---HHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHH
Confidence            456667777778888889999999999999999999998888   99999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcchHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Q 008137          105 VLFFIGAIIMAIAPQPWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFTKAPG  184 (576)
Q Consensus       105 ~~~~i~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~  184 (576)
                      ++++++.++++++++++.+++.|++.|++.|..++...+++.|++|+++|++++++++.+.++|..+++++.+.+.+..+
T Consensus        96 ~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~g  175 (434)
T PRK11663         96 IATGIINILFGFSSSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALHYG  175 (434)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999988776


Q ss_pred             hhHHHHHHhHHHHHHHHH-HHhhccCChhHHhhcCCHHHHHHHHHHhCCchhhhHHHHHHHHHHHhhhhhhcccchhhHH
Q 008137          185 TWRWMLGVAGLPAVVQFG-LMMMLPESPRWLYRQNKVDEARAILEKIYPADQVEEEVNLLKQSVENEKAEEGLIGKDMIS  263 (576)
Q Consensus       185 ~Wr~~f~v~~~~~~~~~~-~~~~l~esp~~l~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (576)
                       ||+.|++.+++.++..+ .++.++|+|++...+...++..+.          .+.        .++...+.       .
T Consensus       176 -w~~~f~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~----------~~~--------~~~~~~~~-------~  229 (434)
T PRK11663        176 -WRYGMMIAGIIAIVVGLFLCWRLRDKPQAMGLPSVGEWRHDA----------LEL--------AQQQEGAG-------L  229 (434)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHHcCCCHhhcCCCCcccccccc----------ccc--------chhccccC-------C
Confidence             99999998887665544 355678877542111100000000          000        00000000       0


Q ss_pred             HhhhhcccchhhhhhHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcCCchhHHHHHHHHHhHHHHHHHHHHHHhhccc--C
Q 008137          264 RLKGAFGNKIVRRGLYAGVTVQVAQQFVGINTVMYYSPTIVQFAGFASKSTALALSLVTSGLNALGSIVSMAFVDKY--G  341 (576)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dk~--g  341 (576)
                      +.++.++....+.+.++.+.............+..|.|.|+++..+.+..+++.......++++++.++.|+++||+  +
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~  309 (434)
T PRK11663        230 SRKEILTKYVLLNPYIWLLSFSYVLVYVVRAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNG  309 (434)
T ss_pred             ChhhhHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccC
Confidence            11111111111222233333333334444556677889888655444777778888888899999999999999998  3


Q ss_pred             ChHHH-HHHHHHHHHHHHHHHHHHHHhhhcCCCccccccccCCCCCCCCcccccCCCCcccccccccccccccCCCCCCC
Q 008137          342 RRRLM-IVSMFGLSSCLVALAVVFFQAAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAHKGNEY  420 (576)
Q Consensus       342 rr~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  420 (576)
                      +|+.. ....+...+....+.....                                                       
T Consensus       310 ~r~~~~~~~~~~~~~~~~~~~~~~~-------------------------------------------------------  334 (434)
T PRK11663        310 NRGPMNLIFAAGILLSVGSLWLMPF-------------------------------------------------------  334 (434)
T ss_pred             CccHHHHHHHHHHHHHHHHHHHccc-------------------------------------------------------
Confidence            33332 2222222222211111100                                                       


Q ss_pred             CCCcccccccccccccccccccccccCCCCcchhHHHHHHHHHHHHhcCCcccccchhccccccccccccchhHHHHHHH
Q 008137          421 LPGACLIDEKSTDTLCSDEHRTYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEIYPLRYRGVGGGIAAVSNW  500 (576)
Q Consensus       421 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~  500 (576)
                                                    ...+.........+ .+..+..........|.+|++.||+++|+.++..+
T Consensus       335 ------------------------------~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~  383 (434)
T PRK11663        335 ------------------------------ASYVMQAACFFTIG-FFVFGPQMLIGMAAAECSHKEAAGAATGFVGLFAY  383 (434)
T ss_pred             ------------------------------ccHHHHHHHHHHHH-HHHhhHHHHHHHHHHhcccHhhHHhHHHHHHHHHH
Confidence                                          00011111111111 11112122223456899999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHhhccCCCCC
Q 008137          501 TSNLIVSLTFLTLTEALGSAGTFLLFAGFSLLGLVAIYLLVPETKGL  547 (576)
Q Consensus       501 ~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  547 (576)
                      +|.+++|.++|.+.+..|+...|.+.+++++++.+..+...++++++
T Consensus       384 ~g~~~~p~~~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~  430 (434)
T PRK11663        384 LGAALSGYPLAKVLEIWHWTGFFVVISIAAGISALLLLPFLNAQAPR  430 (434)
T ss_pred             HHHHHhcccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhhhchh
Confidence            99999999999999999999999999888888877666655544443

>PRK12307 putative sialic acid transporter; Provisional

Probab=100.00  E-value=3.2e-33  Score=299.41  Aligned_cols=396  Identities=20%  Similarity=0.232  Sum_probs=282.5

Q ss_pred             hhHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHH
Q 008137           25 PYIMKLALSAGIGGLLFGYDTGVISGALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGAD  104 (576)
Q Consensus        25 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~  104 (576)
                      +++++.+..+.++.+.++++.....+..|.+.++++.++.+.   +++.+++.+++.+++++.|+++||+|||+++.++.
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~---~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~   90 (426)
T PRK12307         14 RPQKNALFSAWLGYVFDGFDFMLIFYIMYLIKADLGLTDMEG---AFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSI   90 (426)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHH
Confidence            456666778888899999999999999999999999998888   99999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcchHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Q 008137          105 VLFFIGAIIMAIAPQPWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFTKAPG  184 (576)
Q Consensus       105 ~~~~i~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~  184 (576)
                      +++++++++++++++++.++++|+++|++.|...+....++.|++|+++|+++.++...+..+|.++++.+.+.+.+..+
T Consensus        91 ~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~  170 (426)
T PRK12307         91 VAYSVGTGLSGLASGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEAYG  170 (426)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHcccCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999988887776


Q ss_pred             hhHHHHHHhHHHHHHHHHHHhhccCChhHHhhcCCHHHHHHHHHHhCCchhhhHHHHHHHHHHHhhhhhhcccchhhHHH
Q 008137          185 TWRWMLGVAGLPAVVQFGLMMMLPESPRWLYRQNKVDEARAILEKIYPADQVEEEVNLLKQSVENEKAEEGLIGKDMISR  264 (576)
Q Consensus       185 ~Wr~~f~v~~~~~~~~~~~~~~l~esp~~l~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (576)
                       ||+.|++..+..++.+......||++++..++.+.            .++                 ..+...+....+
T Consensus       171 -w~~~f~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~------------~~~-----------------~~~~~~~~~~~~  220 (426)
T PRK12307        171 -WRAAFFVGLLPVLLVIYIRARAPESKEWEEAKLSG------------KGK-----------------HSQSAWSVFSLS  220 (426)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHCCCChHHHHhhhhc------------ccc-----------------ccccchhhhhHH
Confidence             99999986554444333333356654432111000            000                 000000001123


Q ss_pred             hhhhcccchhhhhhHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcCCchhHHHHHHHHHhHHHHHHHHHHHHhhcccCChH
Q 008137          265 LKGAFGNKIVRRGLYAGVTVQVAQQFVGINTVMYYSPTIVQFAGFASKSTALALSLVTSGLNALGSIVSMAFVDKYGRRR  344 (576)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dk~grr~  344 (576)
                      .++.++++.++.....  ....+..+...+....+.|.++++.+. +....+.......++.+++.++.|++.||++||+
T Consensus       221 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~  297 (426)
T PRK12307        221 MKGLFNRAQFPLTLCV--FIVLFSIFGANWPIFGLLPTYLAGEGF-DTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKK  297 (426)
T ss_pred             HHHHHhhchHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH
Confidence            4455555544332211  111122222333455678888888765 5666677777788889999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccccccCCCCCCCCcccccCCCCcccccccccccccccCCCCCCCCCCc
Q 008137          345 LMIVSMFGLSSCLVALAVVFFQAAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAHKGNEYLPGA  424 (576)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  424 (576)
                      .+..+.++..+..+++.....                                                           
T Consensus       298 ~~~~~~~~~~~~~~~~~~~~~-----------------------------------------------------------  318 (426)
T PRK12307        298 TFSIGLLMSFLFIFPLFRIPQ-----------------------------------------------------------  318 (426)
T ss_pred             HHHHHHHHHHHHHHHHHHHcc-----------------------------------------------------------
Confidence            888776665544433322100                                                           


Q ss_pred             ccccccccccccccccccccccCCCCcchhHHHHHHHHHHH-HhcCCcccccchhccccccccccccchhHHHHHHHHHH
Q 008137          425 CLIDEKSTDTLCSDEHRTYFISGCPSSFGWLAVVFLGAYII-TYSPGMGTAPWIVNSEIYPLRYRGVGGGIAAVSNWTSN  503 (576)
Q Consensus       425 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~g~  503 (576)
                                                + .+..+ ..+.++. ....+..+....++.|.+|++.||++.|+.+....+++
T Consensus       319 --------------------------~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~  370 (426)
T PRK12307        319 --------------------------D-NYLLL-GACLFGLMATNVGVGGLVPKFLYDYFPLEVRGLGTGLIYNLAATSG  370 (426)
T ss_pred             --------------------------c-cHHHH-HHHHHHHHHhcccHhHHHHHHHHHhCcHHHHhhhhhHHHHHHhHHH
Confidence                                      0 01111 1122222 22223334445677899999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhccchh-hHHHHHHHHHHHHHHHhhccC
Q 008137          504 LIVSLTFLTLTEALGSAGT-FLLFAGFSLLGLVAIYLLVPE  543 (576)
Q Consensus       504 ~~~~~~~~~l~~~~g~~~~-~~~~~~~~~i~~~~~~~~~~~  543 (576)
                      .++|.+.+.+.+..|+... ++..+..++++.....+..|+
T Consensus       371 ~~gp~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  411 (426)
T PRK12307        371 TFNSMAATWLGITMGLGAALTFIVAFWTATILLIIGLSIPD  411 (426)
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhccccCCh
Confidence            9999999999998886543 333333333333333333343

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=100.00  E-value=2e-33  Score=299.06  Aligned_cols=384  Identities=22%  Similarity=0.201  Sum_probs=286.7

Q ss_pred             hhhHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHH
Q 008137           24 TPYIMKLALSAGIGGLLFGYDTGVISGALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGA  103 (576)
Q Consensus        24 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~  103 (576)
                      .+++|.++.+..+..+++++|....+...|.+.++++.++.+.   +++.+.+.++..+++++.|+++||+|||+++.++
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~---g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~   86 (406)
T PRK11551         10 SSRLALTIGLCFLVALLEGLDLQSAGVAAPRMAQEFGLDVAQM---GWAFSAGILGLLPGALLGGRLADRIGRKRILIVS   86 (406)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHH
Confidence            3478888888889999999999999999999999999998888   9999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcchHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 008137          104 DVLFFIGAIIMAIAPQPWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFTKAP  183 (576)
Q Consensus       104 ~~~~~i~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~~  183 (576)
                      .++..++.++++++++++.+++.|++.|++.+...+...+++.|++|+++|++++++.+.+..+|..+++.+++.+.+..
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  166 (406)
T PRK11551         87 VALFGLFSLATAQAWDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAGDA  166 (406)
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999998888777


Q ss_pred             chhHHHHHHhHHHHHHHHHH-HhhccCChhHHhhcCCHHHHHHHHHHhCCchhhhHHHHHHHHHHHhhhhhhcccchhhH
Q 008137          184 GTWRWMLGVAGLPAVVQFGL-MMMLPESPRWLYRQNKVDEARAILEKIYPADQVEEEVNLLKQSVENEKAEEGLIGKDMI  262 (576)
Q Consensus       184 ~~Wr~~f~v~~~~~~~~~~~-~~~l~esp~~l~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (576)
                      + ||+.|++.+++.++..+. ..++||+|++...+++.++.+                                      
T Consensus       167 ~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~--------------------------------------  207 (406)
T PRK11551        167 A-WRHIFYVGGVGPLLLVPLLMRWLPESRAFAQAAGAGKQRA--------------------------------------  207 (406)
T ss_pred             C-HHHHHHHHHHHHHHHHHHHHHhCCCChhHHhccCcchhhh--------------------------------------
Confidence            6 999999988766655544 556788876432211100000                                      


Q ss_pred             HHhhhhcccchhhhhhHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcCCchhHHHHHHHHHhHHHHHHHHHHHHhhcccCC
Q 008137          263 SRLKGAFGNKIVRRGLYAGVTVQVAQQFVGINTVMYYSPTIVQFAGFASKSTALALSLVTSGLNALGSIVSMAFVDKYGR  342 (576)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dk~gr  342 (576)
                      ...+..++.+..++  ........+......+....|.|.++++.+. +....+.......++.+++.++.|++.||++|
T Consensus       208 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~-s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~  284 (406)
T PRK11551        208 PVLRALFGEGRATA--TLLLWISYFFTLIVLYFLLNWLPSLLVGQGL-SRSQAGLVQIAFNIGGALGSLLIGALMDRLRP  284 (406)
T ss_pred             hhHHHHhhhhhhhH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-ChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence            00000111111111  1111122223333445566678888888765 66677777788888899999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccccccCCCCCCCCcccccCCCCcccccccccccccccCCCCCCCCC
Q 008137          343 RRLMIVSMFGLSSCLVALAVVFFQAAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAHKGNEYLP  422 (576)
Q Consensus       343 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  422 (576)
                      |+.+....+...++++++.....                                                         
T Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~---------------------------------------------------------  307 (406)
T PRK11551        285 RRVVLLIYAGILASLAALAAAPS---------------------------------------------------------  307 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCc---------------------------------------------------------
Confidence            99887765555555443322110                                                         


Q ss_pred             CcccccccccccccccccccccccCCCCcchhHHHHHHHHHHHHhcCCcccccchhccccccccccccchhHHHHHHHHH
Q 008137          423 GACLIDEKSTDTLCSDEHRTYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEIYPLRYRGVGGGIAAVSNWTS  502 (576)
Q Consensus       423 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~g  502 (576)
                                                    .+...+...+.+++. .+..+....+..|.+|++.||++.|+.+....+|
T Consensus       308 ------------------------------~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g  356 (406)
T PRK11551        308 ------------------------------FAGMLLAGFAAGLFV-VGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLG  356 (406)
T ss_pred             ------------------------------HHHHHHHHHHHHHHH-HhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHH
Confidence                                          122222222222222 2334556678899999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhccch-hhHHHHHHHHHHHHHHHhh
Q 008137          503 NLIVSLTFLTLTEALGSAG-TFLLFAGFSLLGLVAIYLL  540 (576)
Q Consensus       503 ~~~~~~~~~~l~~~~g~~~-~~~~~~~~~~i~~~~~~~~  540 (576)
                      ..++|.+.|.+.+..+... .++....+.+++.+..+..
T Consensus       357 ~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  395 (406)
T PRK11551        357 SMAGPLLAGQLLALGRSTVGVIGASIPVILVAALAALLL  395 (406)
T ss_pred             HHHHhhhHhhhhccCCchHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999998765443 3444444555555554443

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=100.00  E-value=4.2e-34  Score=305.28  Aligned_cols=398  Identities=16%  Similarity=0.097  Sum_probs=280.6

Q ss_pred             hhHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHH
Q 008137           25 PYIMKLALSAGIGGLLFGYDTGVISGALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGAD  104 (576)
Q Consensus        25 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~  104 (576)
                      +.+|+++..++++.+++++|+..++...|.+.+|++.+..+.   |++.+++.+++.+++++.|+++||+|||+++..+.
T Consensus         4 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~s~~~~---g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~   80 (412)
T TIGR02332         4 KLFRRLIIFLFILFIFSFLDRINIGFAGLTMGKDLGLSATMF---GLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIM   80 (412)
T ss_pred             eehhHHHHHHHHHHHHHHhhhhhHHHHHHhhHhhcCCCHHHH---HHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHH
Confidence            456788888899999999999999999999999999999888   99999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcchHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhcCC--
Q 008137          105 VLFFIGAIIMAIAPQPWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFTKA--  182 (576)
Q Consensus       105 ~~~~i~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~--  182 (576)
                      ++++++++++++++|++++++.|+++|++.+...+....++.|++|+++|++++++++.+.++|..+++++++.+.+.  
T Consensus        81 ~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~  160 (412)
T TIGR02332        81 VLWGIASTATMFATGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALDG  160 (412)
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999887642  


Q ss_pred             ---CchhHHHHHHhHHHHHHHHHH-HhhccCChhHHhhcCCHHHHHHHHHHhCCchhhhHHHHHHHHHHHhhhhhhcccc
Q 008137          183 ---PGTWRWMLGVAGLPAVVQFGL-MMMLPESPRWLYRQNKVDEARAILEKIYPADQVEEEVNLLKQSVENEKAEEGLIG  258 (576)
Q Consensus       183 ---~~~Wr~~f~v~~~~~~~~~~~-~~~l~esp~~l~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (576)
                         ..+||+.|++.++++++..++ ++++||+|+.... -..++.+...+..+....   +.+      +.+...++ ..
T Consensus       161 ~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~~~~~-l~~~~~~~~~~~~~~~~~---~~~------~~~~~~~~-~~  229 (412)
T TIGR02332       161 LMALKGWQWLFLLEGFPSVILGVMTWFWLDDSPDKAKW-LDEEDKKALKEMIDNDQL---TLE------QPEGAFAH-AA  229 (412)
T ss_pred             CCCccchhHHHHHHHHHHHHHHHHHhhccCCCcccCCC-CCHHHHHHHHHHHHhccc---ccc------cccccccc-cc
Confidence               125999999988887765554 5667888752110 001111110000000000   000      00000000 00


Q ss_pred             hhhHHHhhhhcccchhhhhhHHHHHHHHHHHHHhhHHHHhhhHHHHHhhc-CCchhHHHHHHHHHhHHHHHHHHHHHHhh
Q 008137          259 KDMISRLKGAFGNKIVRRGLYAGVTVQVAQQFVGINTVMYYSPTIVQFAG-FASKSTALALSLVTSGLNALGSIVSMAFV  337 (576)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ig~~~~g~l~  337 (576)
                      ......+++.+ ++     .++......+......+.+..|.|.++++.+ ..+...++.......++.+++.++.|+++
T Consensus       230 ~~~~~~~~~~~-~~-----~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~  303 (412)
T TIGR02332       230 MPQRSMLREIF-TP-----AIMLYTLAYFCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHS  303 (412)
T ss_pred             ccHHHHHHHhc-Ch-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHh
Confidence            00001122222 12     2333444444455566778889999998753 33566777778888999999999999999


Q ss_pred             cccCChHHH-HHHHHHHHHHHHHHHHHHHHhhhcCCCccccccccCCCCCCCCcccccCCCCcccccccccccccccCCC
Q 008137          338 DKYGRRRLM-IVSMFGLSSCLVALAVVFFQAAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAHK  416 (576)
Q Consensus       338 dk~grr~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  416 (576)
                      ||++||+.. ...+++..+++ ++... . .                                                 
T Consensus       304 dr~~~r~~~~~~~~~~~~~~~-~~~~~-~-~-------------------------------------------------  331 (412)
T TIGR02332       304 DRLKERKHHTALPYLFAAAGW-LLASA-T-D-------------------------------------------------  331 (412)
T ss_pred             cccCccHHHHHHHHHHHHHHH-HHHHh-c-C-------------------------------------------------
Confidence            999977753 33333333222 11111 0 0                                                 


Q ss_pred             CCCCCCCcccccccccccccccccccccccCCCCcchhHHHHHHHHHHHHhcCCcccccchhccccccccccccchhHHH
Q 008137          417 GNEYLPGACLIDEKSTDTLCSDEHRTYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEIYPLRYRGVGGGIAA  496 (576)
Q Consensus       417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~~~g~~~  496 (576)
                                                         .....+..+.....+.. ...+..+....|.+|++.|+++.|+.+
T Consensus       332 -----------------------------------~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~a~g~~~  375 (412)
T TIGR02332       332 -----------------------------------HNLIQLLGIIMASMGSF-SAMAIFWTTPDQSISLQARAIAIAVIN  375 (412)
T ss_pred             -----------------------------------CHHHHHHHHHHHHHHhh-hhhhHHHhhcccccchHHHHHHHHHHH
Confidence                                               00111111222222211 112333455578899999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhc-cchhhHHHHHHH
Q 008137          497 VSNWTSNLIVSLTFLTLTEALG-SAGTFLLFAGFS  530 (576)
Q Consensus       497 ~~~~~g~~~~~~~~~~l~~~~g-~~~~~~~~~~~~  530 (576)
                      ...++|++++|.+.+.+.+..| |...+++.+++.
T Consensus       376 ~~~~~g~~~~p~~~g~i~~~~g~~~~~~~~~~~~~  410 (412)
T TIGR02332       376 ATGNIGSALSPFLIGILKDATGSFNSGLWFVAALL  410 (412)
T ss_pred             HhhhhhhhhhhhhcccccccCCCCchhHHHHHHHH
Confidence            9999999999999999999875 666666655543

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>TIGR00891 2A0112 putative sialic acid transporter

Probab=100.00  E-value=2.8e-33  Score=296.39  Aligned_cols=391  Identities=18%  Similarity=0.175  Sum_probs=279.9

Q ss_pred             chhhHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHH
Q 008137           23 TTPYIMKLALSAGIGGLLFGYDTGVISGALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLG  102 (576)
Q Consensus        23 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~  102 (576)
                      .++++|+.+..+.++.+.++++....+++.|.+.++++.+..+.   +++.+++.++..+++++.|+++||+|||+++.+
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~---g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~   82 (405)
T TIGR00891         6 LTRAQWNAFSAAWLGWLLDAFDFFLVALVLAEVAGEFGLTTVDA---ASLISAALISRWFGALMFGLWGDRYGRRLPMVT   82 (405)
T ss_pred             CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhH---HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHH
Confidence            45678888899999999999999999999999999999999888   999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhcchHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 008137          103 ADVLFFIGAIIMAIAPQPWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFTKA  182 (576)
Q Consensus       103 ~~~~~~i~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~  182 (576)
                      +.+++++++++++++++++.+++.|++.|++.+...+...+++.|++|+++|+++.++.+.+..+|.++++.+.+.+.+.
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~  162 (405)
T TIGR00891        83 SIVLFSAGTLACGFAPGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPV  162 (405)
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999988765


Q ss_pred             Cc-hhHHHHHHhHHHHHHHHHHHhhccCChhHHhhcCCHHHHHHHHHHhCCchhhhHHHHHHHHHHHhhhhhhcccchhh
Q 008137          183 PG-TWRWMLGVAGLPAVVQFGLMMMLPESPRWLYRQNKVDEARAILEKIYPADQVEEEVNLLKQSVENEKAEEGLIGKDM  261 (576)
Q Consensus       183 ~~-~Wr~~f~v~~~~~~~~~~~~~~l~esp~~l~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (576)
                      .+ +||+.|++.+++.++.++....+||++++...+++.++.++..++......      .       .+.    ..++.
T Consensus       163 ~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~-------~~~----~~~~~  225 (405)
T TIGR00891       163 WGDGWRALFFISILPIIFALWLRKNIPEAEDWKEKHAGKALVRTMVDILYGGEH------R-------IAN----IVMTL  225 (405)
T ss_pred             cCccHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHhhhhhhhhhHHHHHhccch------h-------hhh----hhhhh
Confidence            43 599999988777766666666788876543322211111111111000000      0       000    00000


Q ss_pred             HHHhhhhcccchhhhhhHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcCCchhHHHHHHHHHhHHHHHHHHHHHHhhcccC
Q 008137          262 ISRLKGAFGNKIVRRGLYAGVTVQVAQQFVGINTVMYYSPTIVQFAGFASKSTALALSLVTSGLNALGSIVSMAFVDKYG  341 (576)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dk~g  341 (576)
                      ....+.   ....+...+...................+.|.++.+..+.+..+.+.+.....++.+++.++.+++.||++
T Consensus       226 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g  302 (405)
T TIGR00891       226 AAAMVQ---SAGKRWPTFVYLVVLVLFANLYSHPIQDLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLG  302 (405)
T ss_pred             hHHhhh---hhhhhhHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            001111   00011111111222222222223344556677776544447777777778888899999999999999999


Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccccccCCCCCCCCcccccCCCCcccccccccccccccCCCCCCCC
Q 008137          342 RRRLMIVSMFGLSSCLVALAVVFFQAAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAHKGNEYL  421 (576)
Q Consensus       342 rr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  421 (576)
                      ||+.+..+.++..+..+.+... .                                                        
T Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~-~--------------------------------------------------------  325 (405)
T TIGR00891       303 RRKAYVCSLLAGQLLIIPVFAI-G--------------------------------------------------------  325 (405)
T ss_pred             chhhhHHHHHHHHHHHHHHHHh-C--------------------------------------------------------
Confidence            9998877665543322221111 0                                                        


Q ss_pred             CCcccccccccccccccccccccccCCCCcchhHHHHHHHHHHHHhcCCcccccchhccccccccccccchhHHHHHHHH
Q 008137          422 PGACLIDEKSTDTLCSDEHRTYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEIYPLRYRGVGGGIAAVSNWT  501 (576)
Q Consensus       422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~  501 (576)
                                                  . ..+...+..++..... .+..+....+..|.+|++.||+++|+.+....+
T Consensus       326 ----------------------------~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  375 (405)
T TIGR00891       326 ----------------------------A-NVAVLGLGLFFQQMLV-QGIWGILPKHLGEYFPTDQRAAGLGFTYQLGNL  375 (405)
T ss_pred             ----------------------------C-chHHHHHHHHHHHHHH-ccchhhHHHHHhhhCCcchhHHHhhHHHHHHHH
Confidence                                        0 0122222222222222 233445557789999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhc-cchhh
Q 008137          502 SNLIVSLTFLTLTEALG-SAGTF  523 (576)
Q Consensus       502 g~~~~~~~~~~l~~~~g-~~~~~  523 (576)
                      +..++|.+.|.+.|..| +...+
T Consensus       376 g~~~g~~~~g~l~~~~g~~~~~~  398 (405)
T TIGR00891       376 GGALAPIIGALLAQRLDEYGTAL  398 (405)
T ss_pred             HHHHHHHHHHHHHHhccccchhH
Confidence            99999999999999988 54333

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=100.00  E-value=1.9e-33  Score=289.27  Aligned_cols=375  Identities=19%  Similarity=0.181  Sum_probs=298.3

Q ss_pred             hhHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHH
Q 008137           25 PYIMKLALSAGIGGLLFGYDTGVISGALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGAD  104 (576)
Q Consensus        25 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~  104 (576)
                      +..+..++.+.++.|..+.+......++|++++|++.+..+.   |++.|+|.++..+++++...+.||+.||++++..+
T Consensus         9 ~~~~~~l~aLa~~~F~igttEfv~~gLLp~iA~dl~vs~~~a---G~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l   85 (394)
T COG2814           9 KPMWLALLALALAAFAIGTTEFVPVGLLPPIAADLGVSEGAA---GQLITAYALGVALGAPLLALLTGRLERRRLLLGLL   85 (394)
T ss_pred             ccchHHHHHHHHHHHHHHhHHHHHHhchHHHHHHcCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHH
Confidence            345677888889999999999999999999999999999999   99999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcchHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Q 008137          105 VLFFIGAIIMAIAPQPWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFTKAPG  184 (576)
Q Consensus       105 ~~~~i~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~  184 (576)
                      .++.++++++++++||+.++++|++.|++.|..++.+.++.++..|+++|++++++...+.+++.++|.+++.++.+..|
T Consensus        86 ~lFi~~n~l~alAp~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~G  165 (394)
T COG2814          86 ALFIVSNLLSALAPSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLFG  165 (394)
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHHhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             hhHHHHHHhHHHHHHHHHH-HhhccCChhHHhhcCCHHHHHHHHHHhCCchhhhHHHHHHHHHHHhhhhhhcccchhhHH
Q 008137          185 TWRWMLGVAGLPAVVQFGL-MMMLPESPRWLYRQNKVDEARAILEKIYPADQVEEEVNLLKQSVENEKAEEGLIGKDMIS  263 (576)
Q Consensus       185 ~Wr~~f~v~~~~~~~~~~~-~~~l~esp~~l~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (576)
                       ||+.|++.+.++++.++. +..+|  |+....+.+ .+                                       ..
T Consensus       166 -WR~~F~~ia~l~ll~~~~~~~~lP--~~~~~~~~~-~~---------------------------------------~~  202 (394)
T COG2814         166 -WRATFLAIAVLALLALLLLWKLLP--PSEISGSLP-GP---------------------------------------LR  202 (394)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHhCC--CccCCCCCC-cc---------------------------------------hh
Confidence             999999999999988776 66688  211000000 00                                       02


Q ss_pred             HhhhhcccchhhhhhHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcCCchhHHHHHHHHHhHHHHHHHHHHHHhhcccCCh
Q 008137          264 RLKGAFGNKIVRRGLYAGVTVQVAQQFVGINTVMYYSPTIVQFAGFASKSTALALSLVTSGLNALGSIVSMAFVDKYGRR  343 (576)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dk~grr  343 (576)
                      +..+.++++..+.     .....+..+.+.+....|+..++++..+.+.....+....+++++++|.+++|++.|| +.|
T Consensus       203 ~~~~~l~~p~v~~-----~l~~t~l~~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~  276 (394)
T COG2814         203 TLLRLLRRPGVLL-----GLLATFLFMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR-GPR  276 (394)
T ss_pred             HHHHHhcCchHHH-----HHHHHHHHHcchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc-cch
Confidence            2334455554433     2223333344445555555555555555588888888899999999999999999999 888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccccccCCCCCCCCcccccCCCCcccccccccccccccCCCCCCCCCC
Q 008137          344 RLMIVSMFGLSSCLVALAVVFFQAAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAHKGNEYLPG  423 (576)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  423 (576)
                      +.+.....++++.++.+.+....                                                         
T Consensus       277 ~~l~~~~~l~a~~~l~l~~~~~~---------------------------------------------------------  299 (394)
T COG2814         277 RALIAALLLLALALLALTFTGAS---------------------------------------------------------  299 (394)
T ss_pred             hHHHHHHHHHHHHHHHHHHhcch---------------------------------------------------------
Confidence            88888777777777766554221                                                         


Q ss_pred             cccccccccccccccccccccccCCCCcchhHHHHHHHHHHHHhcCCcccccchhccccc--cccccccchhHHHHHHHH
Q 008137          424 ACLIDEKSTDTLCSDEHRTYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEIY--PLRYRGVGGGIAAVSNWT  501 (576)
Q Consensus       424 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~--p~~~rg~~~g~~~~~~~~  501 (576)
                                                   .+..+....+.++..    .+....+..++.  -++.++.+.+++....++
T Consensus       300 -----------------------------~~~~~~~~~~wg~a~----~~~~~~~~~~~a~~~p~~~~~a~sl~~aa~nl  346 (394)
T COG2814         300 -----------------------------PALALALLFLWGFAF----SPALQGLQTRLARLAPDAADLAGSLNVAAFNL  346 (394)
T ss_pred             -----------------------------HHHHHHHHHHHHHHh----hhhhhHHHHHhcccCCCchHHHHHHHHHHHHH
Confidence                                         133333333322222    233333333333  357889999999999999


Q ss_pred             HHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHhhc
Q 008137          502 SNLIVSLTFLTLTEALGSAGTFLLFAGFSLLGLVAIYLLV  541 (576)
Q Consensus       502 g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~  541 (576)
                      |..++..+.|.+.|+.|+....+..+.+.++++++.+...
T Consensus       347 gia~GA~lGG~v~~~~g~~~~~~~~a~l~~~a~~~~~~~~  386 (394)
T COG2814         347 GIALGAALGGLVLDALGYAATGWVGAALLLLALLLALLSA  386 (394)
T ss_pred             HHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999998888888775543

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=100.00  E-value=4.8e-41  Score=362.73  Aligned_cols=434  Identities=34%  Similarity=0.647  Sum_probs=338.5

Q ss_pred             HHHHHHHhhhhhhhhHHHHHHHHH--Hhhccchh------hhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHH
Q 008137           33 SAGIGGLLFGYDTGVISGALLYIK--EDFRDVEK------KTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGAD  104 (576)
Q Consensus        33 ~~~l~~~~~~~~~~~~~~~~~~i~--~~~~~~~~------~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~  104 (576)
                      +..++.+..++|...++...+...  ..+..+..      ...+.++..+...+|..+|++++|+++||+|||+.+.++.
T Consensus         4 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~   83 (451)
T PF00083_consen    4 IASLGGFLFGYDLGLIGSFASLLGFLQFFGWSSSESSCEKSSLLSSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISA   83 (451)
T ss_pred             eeHHHHHHHHHHHHHHhhHHhhhhhhhccccccccccccchHHHHHHHHHHHHhhhcccccccccccccccccccccccc
Confidence            345667889999999888777655  22222111      1234589999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcc---hHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 008137          105 VLFFIGAIIMAIAP---QPWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFTK  181 (576)
Q Consensus       105 ~~~~i~~~~~~~~~---~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~  181 (576)
                      ++..+++++.++++   +++.+.++|+++|++.|+..+....++.|..|+++|++..++.+.+..+|.+++..++..+..
T Consensus        84 ~~~~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~  163 (451)
T PF00083_consen   84 LLMIIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVVSPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSY  163 (451)
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            99999999999999   999999999999999999999999999999999999999999999999999998888766533


Q ss_pred             CC--chhHHHHHHhHHHHHHHHHHHhhccCChhHHhhcCCHHHHHHHHHHhCCchhhhHHHHHHHHHHHhhhhhhcccch
Q 008137          182 AP--GTWRWMLGVAGLPAVVQFGLMMMLPESPRWLYRQNKVDEARAILEKIYPADQVEEEVNLLKQSVENEKAEEGLIGK  259 (576)
Q Consensus       182 ~~--~~Wr~~f~v~~~~~~~~~~~~~~l~esp~~l~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (576)
                      ..  ..||+.+++.++++++.++..+++||||+|+..++|.+++++.+++.++.+..+++.++..+..++..+.+     
T Consensus       164 ~~~~~~Wr~~~~~~~~~~l~~~~~~~~~pESP~wL~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-----  238 (451)
T PF00083_consen  164 YSDNWGWRILLIFGAIPSLLVLLLRFFLPESPRWLLSKGRDEEAEKVLRKLRGKEIEDEEIEEIKAEKKESQESK-----  238 (451)
T ss_pred             ccccccccccccccccccccccccccccccccceecccccccccccccccccccccccccccccccccccccccc-----
Confidence            22  24999999999999888888889999999999999999999888876554332222222111111111110     


Q ss_pred             hhHHHhhhhcccchhhhhhHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcCCchhHHHHHHHHHhHHHHHHHHHHHHhhcc
Q 008137          260 DMISRLKGAFGNKIVRRGLYAGVTVQVAQQFVGINTVMYYSPTIVQFAGFASKSTALALSLVTSGLNALGSIVSMAFVDK  339 (576)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dk  339 (576)
                         ..++++++++..+++.+..+.+..+.++.+.+...+|.+.+++..+..+.   ........+...++.+++.++.||
T Consensus       239 ---~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~i~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~  312 (451)
T PF00083_consen  239 ---ASWRDLFRNKKYRKRLLIALLLQFFQQFSGINFIFYYSPSIFENAGISNS---FLATLILGLVNFLGTLLAIFLIDR  312 (451)
T ss_pred             ---eeeeeccccccccccccccccccccccccccccccccccccccccccccc---cccccccccccccccccccccccc
Confidence               44667777766666777777777777777777888888888887776444   233344456667788888899999


Q ss_pred             cCChHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccccccCCCCCCCCcccccCCCCcccccccccccccccCCCCCC
Q 008137          340 YGRRRLMIVSMFGLSSCLVALAVVFFQAAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAHKGNE  419 (576)
Q Consensus       340 ~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  419 (576)
                      +|||++++.+.++++++.+.+..........                                                 
T Consensus       313 ~GRr~~~i~~~~~~~~~~~~~~~~~~~~~~~-------------------------------------------------  343 (451)
T PF00083_consen  313 FGRRKLLIIGLLLMAICSLILGIIFFLGVSS-------------------------------------------------  343 (451)
T ss_pred             ccccccccccccccccccccccccccccccc-------------------------------------------------
Confidence            9999999998888888877665111100000                                                 


Q ss_pred             CCCCcccccccccccccccccccccccCCCCcchhHHHHHHHHHHHHhcCCcccccchhccccccccccccchhHHHHHH
Q 008137          420 YLPGACLIDEKSTDTLCSDEHRTYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEIYPLRYRGVGGGIAAVSN  499 (576)
Q Consensus       420 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~  499 (576)
                                                   +....+..++...++...+..+.++..+.+.+|++|++.|+++.|+....+
T Consensus       344 -----------------------------~~~~~~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~  394 (451)
T PF00083_consen  344 -----------------------------SSWWSILSIVFLALFFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLSYAVG  394 (451)
T ss_pred             -----------------------------ccccccccceeeeeccccccccccccccccccccccccccccccccccccc
Confidence                                         000123334555556667777888888899999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHH
Q 008137          500 WTSNLIVSLTFLTLTEALGSAGTFLLFAGFSLLGLVAIYLLVPETKGLAFEEVEKM  555 (576)
Q Consensus       500 ~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  555 (576)
                      ++++++.+.+...+.+..+....+.++++++++..++.++++||||+++++|++++
T Consensus       395 ~i~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~i~~i~~~~~lpET~g~~l~ei~~~  450 (451)
T PF00083_consen  395 RIGGFIIPFLFPYLFNNLGGWGVFLIFAGVCLIAIIFVYFFLPETKGKTLEEIQEM  450 (451)
T ss_pred             cccccccccccccccccccccccchhhHHHHHHHHhheeEEEeeCCCCCHHHHHhh
Confidence            99999999999988888776678888999999998888999999999999999875

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>PRK03545 putative arabinose transporter; Provisional

Probab=100.00  E-value=1.5e-32  Score=291.01  Aligned_cols=376  Identities=17%  Similarity=0.117  Sum_probs=276.4

Q ss_pred             hhHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHH
Q 008137           25 PYIMKLALSAGIGGLLFGYDTGVISGALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGAD  104 (576)
Q Consensus        25 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~  104 (576)
                      .++|..+..+.++.+....+.....+++|.+.+++|.+..+.   |++.+++.+++.+++++.|++.||+|||+++.++.
T Consensus         5 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~---g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~   81 (390)
T PRK03545          5 KVAWLRVVTLALAAFIFNTTEFVPVGLLSDIAQSFHMQTAQV---GLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLF   81 (390)
T ss_pred             ccchHHHHHHHHHHHHHHhHHHHHHcchHHHHhHcCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHH
Confidence            345555666666666655555566777899999999999988   99999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcchHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Q 008137          105 VLFFIGAIIMAIAPQPWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFTKAPG  184 (576)
Q Consensus       105 ~~~~i~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~  184 (576)
                      ++++++++++++++|+++++++|+++|++.+...+...+++.|++|+++|++++++.+.+.++|..+++++++.+.+..+
T Consensus        82 ~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~g  161 (390)
T PRK03545         82 VLFIASHVLSALAWNFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQYLG  161 (390)
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999887776


Q ss_pred             hhHHHHHHhHHHHHHHHHH-HhhccCChhHHhhcCCHHHHHHHHHHhCCchhhhHHHHHHHHHHHhhhhhhcccchhhHH
Q 008137          185 TWRWMLGVAGLPAVVQFGL-MMMLPESPRWLYRQNKVDEARAILEKIYPADQVEEEVNLLKQSVENEKAEEGLIGKDMIS  263 (576)
Q Consensus       185 ~Wr~~f~v~~~~~~~~~~~-~~~l~esp~~l~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (576)
                       ||+.|++.++++++..+. +..+||.|+.    ++ +.                                       .+
T Consensus       162 -w~~~f~~~~~~~~l~~~~~~~~~~~~~~~----~~-~~---------------------------------------~~  196 (390)
T PRK03545        162 -WRTTFLAIGGGALITLLLLIKLLPLLPSE----HS-GS---------------------------------------LK  196 (390)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHhCCCCCCC----Cc-ch---------------------------------------HH
Confidence             999999998887766554 4445664320    00 00                                       01


Q ss_pred             HhhhhcccchhhhhhHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcCCchhHHHHHHHHHhHHHHHHHHHHHHhhcccCCh
Q 008137          264 RLKGAFGNKIVRRGLYAGVTVQVAQQFVGINTVMYYSPTIVQFAGFASKSTALALSLVTSGLNALGSIVSMAFVDKYGRR  343 (576)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dk~grr  343 (576)
                      +.++.++++..+....    ..++... .......+.+.++++..+.+...++.......++++++.++.+++.||++||
T Consensus       197 ~~~~~~~~~~~~~~~~----~~~~~~~-~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~  271 (390)
T PRK03545        197 SLPLLFRRPALVSLYL----LTVVVVT-AHFTAYSYIEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSG  271 (390)
T ss_pred             HHHHHHhCcHHHHHHH----HHHHHHH-HHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchh
Confidence            1233444444332211    1111111 1222334455555654444666777777788888999999999999999987


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccccccCCCCCCCCcccccCCCCcccccccccccccccCCCCCCCCCC
Q 008137          344 RLMIVSMFGLSSCLVALAVVFFQAAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAHKGNEYLPG  423 (576)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  423 (576)
                      ... .+..+..++..++.....                                                          
T Consensus       272 ~~~-~~~~~~~~~~~~l~~~~~----------------------------------------------------------  292 (390)
T PRK03545        272 FLL-IAIALLLVCLLLLLPAAN----------------------------------------------------------  292 (390)
T ss_pred             HHH-HHHHHHHHHHHHHHHHhc----------------------------------------------------------
Confidence            654 333333333332221110                                                          


Q ss_pred             cccccccccccccccccccccccCCCCcchhHHHHHHHHHHHHhcCCcccccchhccccccccccccchhHHHHHHHHHH
Q 008137          424 ACLIDEKSTDTLCSDEHRTYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEIYPLRYRGVGGGIAAVSNWTSN  503 (576)
Q Consensus       424 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~g~  503 (576)
                                                  ..+..++...+.+.+.. ...+.......+..| +.|++++|+.+...++|.
T Consensus       293 ----------------------------~~~~~~~~~~l~g~~~~-~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~  342 (390)
T PRK03545        293 ----------------------------SEWHLSVLSIFWGIAIM-CIGLAMQVKVLKLAP-DATDVAMALFSGIFNIGI  342 (390)
T ss_pred             ----------------------------hHHHHHHHHHHHHHHHh-cchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHH
Confidence                                        01222333333333332 333334455667766 678999999999999999


Q ss_pred             HHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHhhcc
Q 008137          504 LIVSLTFLTLTEALGSAGTFLLFAGFSLLGLVAIYLLVP  542 (576)
Q Consensus       504 ~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~  542 (576)
                      .++|.+.|.+.+..|++..|.+.+++.+++.++.+...+
T Consensus       343 ~~G~~~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  381 (390)
T PRK03545        343 GAGALLGNQVSLHLGLSSIGYVGAALALAALVWSILIFR  381 (390)
T ss_pred             HHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHcc
Confidence            999999999999999999999999998888888766553

>PRK09952 shikimate transporter; Provisional

Probab=100.00  E-value=2.9e-32  Score=293.43  Aligned_cols=390  Identities=14%  Similarity=0.138  Sum_probs=267.0

Q ss_pred             hHHHHHHHHHHHHHhhhhhhhhHHHHHHH-HHHhh--ccchhhhHHHHHHH-----HHHHHHHHHHHHHHHHhhhccCch
Q 008137           26 YIMKLALSAGIGGLLFGYDTGVISGALLY-IKEDF--RDVEKKTWLQELIV-----SMAVAGAIFGAGFGGWINDRFGRK   97 (576)
Q Consensus        26 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-i~~~~--~~~~~~~~~~g~i~-----s~~~~~~~i~~~~~G~l~dr~Grr   97 (576)
                      ++++.+....++.+++++|...++.+.|. +.+++  +.++..    +++.     ++.+++..++++++|+++||+|||
T Consensus        19 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~Grr   94 (438)
T PRK09952         19 RARRAALGSFAGAVVDWYDFLLYGITAALVFNREFFPQVSPAM----GTLAAFATFGVGFLFRPLGGVVFGHFGDRLGRK   94 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHH----HHHHHHHHHHHHHHHHhhHHHHHHHHHHhhccH
Confidence            44567778888999999999999988875 55565  454442    4332     456678889999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhcchHH--------HHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHH
Q 008137           98 ISLLGADVLFFIGAIIMAIAPQPW--------VIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQ  169 (576)
Q Consensus        98 ~~~~~~~~~~~i~~~~~~~~~~~~--------~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~  169 (576)
                      +++.++.++++++++++++++++.        .++++|+++|++.|+.++.+..++.|++|+++|++..+..+.+..+|.
T Consensus        95 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~g~~~G~  174 (438)
T PRK09952         95 RMLMLTVWMMGIATALIGLLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKNKKAFYSSGVQVGYGVGL  174 (438)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHH
Confidence            999999999999999999999987        588999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcC--------CCchhHHHHHHhHHHHHHHHHHHhhccCChhHHhhcCCHHHHHHHHHHhCCchhhhHHHH
Q 008137          170 FLAYLINLAFTK--------APGTWRWMLGVAGLPAVVQFGLMMMLPESPRWLYRQNKVDEARAILEKIYPADQVEEEVN  241 (576)
Q Consensus       170 ~l~~~l~~~l~~--------~~~~Wr~~f~v~~~~~~~~~~~~~~l~esp~~l~~~~~~~~~~~~l~~i~~~~~~~~~~~  241 (576)
                      +++..+...+..        .. +||++|++.+++.++.+.....+||+|++...+++.++.+                 
T Consensus       175 ~l~~~~~~~l~~~~~~~~~~~~-gWr~~f~~~~~~~l~~~~l~~~~~es~~~~~~~~~~~~~~-----------------  236 (438)
T PRK09952        175 LLSTGLVSLISMMTTDEQFLSW-GWRIPFLFSIVLVLIALWVRNGMEESAEFEQQQHEQAAAK-----------------  236 (438)
T ss_pred             HHHHHHHHHHHHhCCHHHhhcc-ChHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHhhccccc-----------------
Confidence            998877766542        23 4999999988877665555566788876532221100000                 


Q ss_pred             HHHHHHHhhhhhhcccchhhHHHhhhhcccchhhhhhHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcCCchhHHHHHHHH
Q 008137          242 LLKQSVENEKAEEGLIGKDMISRLKGAFGNKIVRRGLYAGVTVQVAQQFVGINTVMYYSPTIVQFAGFASKSTALALSLV  321 (576)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (576)
                                  ++.      +..+..++++..    +.......+......+....|.|.|+++..+.+..........
T Consensus       237 ------------~~~------~~~~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~g~s~~~~~~~~~~  294 (438)
T PRK09952        237 ------------KRI------PVIEALLRHPGA----FLKIIALRLCELLTMYIVTAFALNYSTQNLGLPRELFLNIGLL  294 (438)
T ss_pred             ------------ccC------CHHHHHHHchHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence                        000      001112222221    1112222222333455566677888765444354444444445


Q ss_pred             HhHHHHHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccccccCCCCCCCCcccccCCCCccc
Q 008137          322 TSGLNALGSIVSMAFVDKYGRRRLMIVSMFGLSSCLVALAVVFFQAAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWN  401 (576)
Q Consensus       322 ~~~~~~ig~~~~g~l~dk~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  401 (576)
                      ..+..+++.++.|+++||+|||+.+..++++..++.+.+...... .                                 
T Consensus       295 ~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~-~---------------------------------  340 (438)
T PRK09952        295 VGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALEA-Q---------------------------------  340 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHc-C---------------------------------
Confidence            566678888999999999999998887766555444333222110 0                                 


Q ss_pred             ccccccccccccCCCCCCCCCCcccccccccccccccccccccccCCCCcchhHHHHHHHHHHHHhcCCcccccchhccc
Q 008137          402 CMDCLKAKCGFCAHKGNEYLPGACLIDEKSTDTLCSDEHRTYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSE  481 (576)
Q Consensus       402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e  481 (576)
                                                                       +..+..+....+..++.+ ...+..+.+.+|
T Consensus       341 -------------------------------------------------~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~e  370 (438)
T PRK09952        341 -------------------------------------------------SIFWIVFFSIMLANIAHD-MVVCVQQPMFTE  370 (438)
T ss_pred             -------------------------------------------------ChHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence                                                             001222222222222222 223345678899


Q ss_pred             cccccccccchhHHHHHH-HHHHHHHHHHHHHHHHhh--ccchhhHHHHHHHHHHHHHHHhhccCC
Q 008137          482 IYPLRYRGVGGGIAAVSN-WTSNLIVSLTFLTLTEAL--GSAGTFLLFAGFSLLGLVAIYLLVPET  544 (576)
Q Consensus       482 ~~p~~~rg~~~g~~~~~~-~~g~~~~~~~~~~l~~~~--g~~~~~~~~~~~~~i~~~~~~~~~~~~  544 (576)
                      .+|++.|+++.|+.+..+ .+++.++|.+.+.+.+..  ++...+.+.+++++++.+..+ ..+|+
T Consensus       371 ~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~~-~~~~~  435 (438)
T PRK09952        371 MFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTAL-LMKDN  435 (438)
T ss_pred             HCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHH-Hcccc
Confidence            999999999999976554 489999999999998854  356667777777777776654 45553

>PRK15075 citrate-proton symporter; Provisional

Probab=100.00  E-value=3.1e-32  Score=292.92  Aligned_cols=396  Identities=18%  Similarity=0.158  Sum_probs=258.0

Q ss_pred             hHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhccchhhhHHHHHHHH-----HHHHHHHHHHHHHHHhhhccCchHHH
Q 008137           26 YIMKLALSAGIGGLLFGYDTGVISGALLYIKEDFRDVEKKTWLQELIVS-----MAVAGAIFGAGFGGWINDRFGRKISL  100 (576)
Q Consensus        26 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~i~s-----~~~~~~~i~~~~~G~l~dr~Grr~~~  100 (576)
                      .|++....++++.+++++|+..++...|.+.++++.++.+..  .+..+     ...++..+++++.|+++||+|||+.+
T Consensus        12 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l   89 (434)
T PRK15075         12 SKARAILRVTSGNFLEMFDFFLFGFYATAIAKTFFPAGNEFA--SLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRKGL   89 (434)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchH--HHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHHHH
Confidence            345567888899999999999999999999999998776641  22222     22344467899999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhcchHH--------HHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHH
Q 008137          101 LGADVLFFIGAIIMAIAPQPW--------VIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLA  172 (576)
Q Consensus       101 ~~~~~~~~i~~~~~~~~~~~~--------~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~  172 (576)
                      +.+.+++++++++++++++++        .++++|+++|++.|...+....+++|++|+++|++++++.+.+..+|..++
T Consensus        90 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~~~g  169 (434)
T PRK15075         90 IVTLSIMASGTLLIAFVPGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYTSWQSASQQVAVVFA  169 (434)
T ss_pred             HHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchHHHHHHHHHHHHHHHHH
Confidence            999999999999999999987        468999999999999999999999999999999999999998888888887


Q ss_pred             HHHHHHhc--------CCCchhHHHHHHhHHHHHHHHHHHhhccCChhHHhhcCCHHHHHHHHHHhCCchhhhHHHHHHH
Q 008137          173 YLINLAFT--------KAPGTWRWMLGVAGLPAVVQFGLMMMLPESPRWLYRQNKVDEARAILEKIYPADQVEEEVNLLK  244 (576)
Q Consensus       173 ~~l~~~l~--------~~~~~Wr~~f~v~~~~~~~~~~~~~~l~esp~~l~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~  244 (576)
                      +.+++.+.        +..+ ||++|++.++..++.+......||++++..++++                         
T Consensus       170 ~~~g~~l~~~~~~~~~~~~g-Wr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~-------------------------  223 (434)
T PRK15075        170 ALLGYLLNQWLSPAQMAEWG-WRIPFLIGCLIVPFIFLIRRSLEETEEFLARKHR-------------------------  223 (434)
T ss_pred             HHHHHHHHHhCCHHHHhccc-hHHHHHHHHHHHHHHHHHHHhcCCCHHHHHhhhc-------------------------
Confidence            77777653        3344 9999998654433222222233443221100000                         


Q ss_pred             HHHHhhhhhhcccchhhHHHhhhhcccchhhhhhHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcCCchhHHHHHHHHHhH
Q 008137          245 QSVENEKAEEGLIGKDMISRLKGAFGNKIVRRGLYAGVTVQVAQQFVGINTVMYYSPTIVQFAGFASKSTALALSLVTSG  324 (576)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (576)
                              .+   .+   +..+...++   ++..+. .....+.+...++....|.|.|+++..+.+..+.+.......+
T Consensus       224 --------~~---~~---~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~  285 (434)
T PRK15075        224 --------PS---MR---EIFRSLAAN---WRIVLA-GMLMVAMTTVSFYLITVYTPTFGKTVLHLSAADSLLVTLCVGV  285 (434)
T ss_pred             --------cc---cc---cHHHHHHHh---HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence                    00   00   001111111   111111 1222233444566778889999987544466677777778888


Q ss_pred             HHHHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccccccCCCCCCCCcccccCCCCcccccc
Q 008137          325 LNALGSIVSMAFVDKYGRRRLMIVSMFGLSSCLVALAVVFFQAAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMD  404 (576)
Q Consensus       325 ~~~ig~~~~g~l~dk~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  404 (576)
                      +++++.++.|+++||+|||+.+..+..+..+...........  .                                   
T Consensus       286 ~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~--~-----------------------------------  328 (434)
T PRK15075        286 SNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWLVA--A-----------------------------------  328 (434)
T ss_pred             HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHc--C-----------------------------------
Confidence            889999999999999999998776544433221111111110  0                                   


Q ss_pred             cccccccccCCCCCCCCCCcccccccccccccccccccccccCCCCcchhHHHHHHHHHHHHhcCCcccccchhcccccc
Q 008137          405 CLKAKCGFCAHKGNEYLPGACLIDEKSTDTLCSDEHRTYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEIYP  484 (576)
Q Consensus       405 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p  484 (576)
                                                                   .. .........+...+++ ...+..+.+..|.+|
T Consensus       329 ---------------------------------------------~~-~~~~~~~~~~~~~~~g-~~~~~~~~~~~e~~p  361 (434)
T PRK15075        329 ---------------------------------------------PS-FARMLAVELWLSFLYG-SYNGAMVVALTEVMP  361 (434)
T ss_pred             ---------------------------------------------Cc-hHHHHHHHHHHHHHHH-HHHhhHHHHHHHHCC
Confidence                                                         00 0111111112222222 222344467789999


Q ss_pred             ccccccchhHHHHHHHH-HHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHhhccCCCCCCHHH
Q 008137          485 LRYRGVGGGIAAVSNWT-SNLIVSLTFLTLTEALGSAGTFLLFAGFSLLGLVAIYLLVPETKGLAFEE  551 (576)
Q Consensus       485 ~~~rg~~~g~~~~~~~~-g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  551 (576)
                      ++.|+++.|+.+..... ++.++|.+.+.+.|..|+.....++.+.+.++.++..+...+.++.+++.
T Consensus       362 ~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  429 (434)
T PRK15075        362 AEVRTAGFSLAYSLATAIFGGFTPAISTWLIHVTGDKAAPGYWLSFAAVCGLIATLVLYRRRGARLQA  429 (434)
T ss_pred             CCccchheeHHHHHHHHHHhhhHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHhccccchhhhh
Confidence            99999999997655554 57889999999999988643222222222223333334455555555543

>PRK03893 putative sialic acid transporter; Provisional

Probab=100.00  E-value=5.5e-32  Score=295.70  Aligned_cols=429  Identities=17%  Similarity=0.171  Sum_probs=286.8

Q ss_pred             hhhHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHH
Q 008137           24 TPYIMKLALSAGIGGLLFGYDTGVISGALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGA  103 (576)
Q Consensus        24 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~  103 (576)
                      ++++|+.+..++++.++..++....++.+|.+.+++|.+..+.   +++.+.+.+++.+++++.|+++||+|||++++++
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~---~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~   91 (496)
T PRK03893         15 NRAQWKAFSAAWLGYLLDGFDFVLITLVLTEVQGEFGLTTVQA---ASLISAAFISRWFGGLLLGAMGDRYGRRLAMVIS   91 (496)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHH
Confidence            3466778888889999999999999999999999999998888   9999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcchHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 008137          104 DVLFFIGAIIMAIAPQPWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFTKAP  183 (576)
Q Consensus       104 ~~~~~i~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~~  183 (576)
                      .++++++.++++++++++.+++.|++.|++.+...+....++.|++|+++|++++++...+..+|..+++.+.+.+.+..
T Consensus        92 ~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~  171 (496)
T PRK03893         92 IVLFSVGTLACGFAPGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVVPVW  171 (496)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999998877


Q ss_pred             chhHHHHHHhHHHHHHHHHHHhhccCChhHHhhcCCHHHHHHHHHHhCCchhhhHHHHHHHHH-HHhhhhhhcccchhhH
Q 008137          184 GTWRWMLGVAGLPAVVQFGLMMMLPESPRWLYRQNKVDEARAILEKIYPADQVEEEVNLLKQS-VENEKAEEGLIGKDMI  262 (576)
Q Consensus       184 ~~Wr~~f~v~~~~~~~~~~~~~~l~esp~~l~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  262 (576)
                      + ||+.|++..+..++.++....+||++++...+++.++.++..+.....+............ ................
T Consensus       172 ~-w~~~f~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (496)
T PRK03893        172 G-WRALFFIGILPIIFALWLRKNLPEAEDWKEKHAGKAPVRTMVDILYRGEHRIINILLTLAAAAALWFCFAGNLQNAAI  250 (496)
T ss_pred             C-HHHHHHHHHHHHHHHHHHHHhCCCchhhhhhccccccchhHHHHHhcchhHHHHHHHHHHHHHHHHHHHHhhhcchhH
Confidence            6 9999988655555444445567877654322211111111111000000000000000000 0000000000000000


Q ss_pred             H---------H-hhhhcccchhhhhhHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcCCchhHHHHHHHHHhHHHHHHHHH
Q 008137          263 S---------R-LKGAFGNKIVRRGLYAGVTVQVAQQFVGINTVMYYSPTIVQFAGFASKSTALALSLVTSGLNALGSIV  332 (576)
Q Consensus       263 ~---------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~  332 (576)
                      .         . .....+.+..+.+.........+..+...+....+.|.|+++..+.+..+.+.+.....++.+++.++
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~  330 (496)
T PRK03893        251 VAVLGLLCAAIFISFMVQSSGKRWPTGVMLMVVVLFAFLYSWPIQALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCV  330 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhccchHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            0         0 00000000011111111222222222222235567888886444447778888888889999999999


Q ss_pred             HHHhhcccCChHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccccccCCCCCCCCcccccCCCCcccccccccccccc
Q 008137          333 SMAFVDKYGRRRLMIVSMFGLSSCLVALAVVFFQAAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGF  412 (576)
Q Consensus       333 ~g~l~dk~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  412 (576)
                      .|+++||++||+.+..+.++..+..+++.....                                               
T Consensus       331 ~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------------------------  363 (496)
T PRK03893        331 GGFLGDWLGTRKAYVCSLLISQLLIIPVFAIGG-----------------------------------------------  363 (496)
T ss_pred             HHHHHHHhcchHHHHHHHHHHHHHHHHHhhccc-----------------------------------------------
Confidence            999999999999887766555444333221100                                               


Q ss_pred             cCCCCCCCCCCcccccccccccccccccccccccCCCCcchhHHHHHHHHHHHHhcCCcccccchhccccccccccccch
Q 008137          413 CAHKGNEYLPGACLIDEKSTDTLCSDEHRTYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEIYPLRYRGVGG  492 (576)
Q Consensus       413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~~~  492 (576)
                                                            . .+..+............+..+....+..|.+|++.||+++
T Consensus       364 --------------------------------------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  404 (496)
T PRK03893        364 --------------------------------------A-NVWVLGLLLFFQQMLGQGISGLLPKLIGGYFDTEQRAAGL  404 (496)
T ss_pred             --------------------------------------c-HHHHHHHHHHHHHHHhcccchhhHHHHHhhCCHHHhhccc
Confidence                                                  0 1111212222222222233445556778999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHH-HHHHHHhhcc
Q 008137          493 GIAAVSNWTSNLIVSLTFLTLTEALGSAGTFLLFAGFSLL-GLVAIYLLVP  542 (576)
Q Consensus       493 g~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~i-~~~~~~~~~~  542 (576)
                      |+.+....+|+.++|.+.|.+.+..|+...+.+.++...+ +.+...+..|
T Consensus       405 ~~~~~~~~~g~~lgp~l~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  455 (496)
T PRK03893        405 GFTYNVGALGGALAPILGALIAQRLDLGTALASLSFSLTFVVILLIGLDMP  455 (496)
T ss_pred             chhhhhhhHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHhcCc
Confidence            9999999999999999999999999988776655544333 3333333344

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=100.00  E-value=3.5e-32  Score=285.67  Aligned_cols=355  Identities=14%  Similarity=0.076  Sum_probs=250.0

Q ss_pred             hhhhhhhHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHhcchH
Q 008137           41 FGYDTGVISGALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFIGAIIMAIAPQP  120 (576)
Q Consensus        41 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~  120 (576)
                      +......+++.+|.+.+|++.+..+.   |++.+.+.+++.+++++.|+++||+|||+++..+......+.+....++++
T Consensus         3 ~~~~~~~~~~~lp~i~~~~~~s~~~~---g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~   79 (368)
T TIGR00903         3 SQAIWVTFSPVLSLVAEDIDVSKEEL---GLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLLDPFNY   79 (368)
T ss_pred             hhHHHHHHHhhHHHHHHHhCcCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHhccH
Confidence            34456678899999999999999888   999999999999999999999999999988766655554444333334799


Q ss_pred             HHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHhHHHHHHH
Q 008137          121 WVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFTKAPGTWRWMLGVAGLPAVVQ  200 (576)
Q Consensus       121 ~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~Wr~~f~v~~~~~~~~  200 (576)
                      ++++++|+++|++.+. .+.....++|++|+++|++++++.+.+..+|..+++++++.+.+..+ ||+.|++.++++++.
T Consensus        80 ~~l~~~R~l~G~g~~~-~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~g-Wr~~f~~~~~l~~~~  157 (368)
T TIGR00903        80 EWLLACQLLAALGQPF-LLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGG-LQLLIIPIAAVAAAG  157 (368)
T ss_pred             HHHHHHHHHHHhHhHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-hHHHHHHHHHHHHHH
Confidence            9999999999999996 56666777999999999999999999999999999999999988776 999999988887776


Q ss_pred             HHH-HhhccCChhHHhhcCCHHHHHHHHHHhCCchhhhHHHHHHHHHHHhhhhhhcccchhhHHHhhhhcccchhhhhhH
Q 008137          201 FGL-MMMLPESPRWLYRQNKVDEARAILEKIYPADQVEEEVNLLKQSVENEKAEEGLIGKDMISRLKGAFGNKIVRRGLY  279 (576)
Q Consensus       201 ~~~-~~~l~esp~~l~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (576)
                      .+. ++++||+|++..++.+  .               .+                     ..++++++++++..     
T Consensus       158 ~~~~~~~lp~~p~~~~~~~~--~---------------~~---------------------~~~~~~~ll~~~~~-----  194 (368)
T TIGR00903       158 IILVLAALPALPFQAAEGFG--F---------------KD---------------------AVKEFGALAGRKDL-----  194 (368)
T ss_pred             HHHHHHHcCCCCCCCCCCcc--h---------------HH---------------------HHHHHHHHHcChhH-----
Confidence            554 5678998763210000  0               00                     00223455555443     


Q ss_pred             HHHHHHHHHHHHhhHHHHhhhHHHHHhhcCCchhHHHHHHHHHhHHHHHHHHHHHHhhcccCCh---HHHHH-HHHHHHH
Q 008137          280 AGVTVQVAQQFVGINTVMYYSPTIVQFAGFASKSTALALSLVTSGLNALGSIVSMAFVDKYGRR---RLMIV-SMFGLSS  355 (576)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dk~grr---~~~~~-~~~~~~~  355 (576)
                      +......++....++.+..|.|.++++.+. +.. .+.......+.+.++   .++++||..||   +.... ..++.++
T Consensus       195 ~~~~~~~~~~~~~~~~~~~wlp~~L~~~g~-s~~-~~~~~~l~~~~g~~g---~~~~~d~~~r~~~r~~~~~~~~~~~a~  269 (368)
T TIGR00903       195 WIIGAILGFGVALFDNLAIWLEAALRPAGL-EDI-AGDAVALAILAGLIG---VAVIPDRVARAGLRSIYIRAAALLIAA  269 (368)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-ChH-HHHHHHHHHHHHHHH---HHHhhHHhhhhhhHHHHHHHHHHHHHH
Confidence            334344445555667778899999988765 444 444444444444444   57778877543   33222 2222222


Q ss_pred             HHHHHHHHHHHhhhcCCCccccccccCCCCCCCCcccccCCCCcccccccccccccccCCCCCCCCCCcccccccccccc
Q 008137          356 CLVALAVVFFQAAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAHKGNEYLPGACLIDEKSTDTL  435 (576)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  435 (576)
                      ++..+.....                                                                      
T Consensus       270 ~~~~~~~~~~----------------------------------------------------------------------  279 (368)
T TIGR00903       270 FFLALAFELN----------------------------------------------------------------------  279 (368)
T ss_pred             HHHHHHHccc----------------------------------------------------------------------
Confidence            2222211100                                                                      


Q ss_pred             cccccccccccCCCCcchhHHHHHHHHHHHHhcCCcccccchhccccccccccccchhHHHHHHHHHHHHHHHHHHHHHH
Q 008137          436 CSDEHRTYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEIYPLRYRGVGGGIAAVSNWTSNLIVSLTFLTLTE  515 (576)
Q Consensus       436 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~g~~~~~~~~~~l~~  515 (576)
                                       .+..+..+++..+ +..+..+..+.+.+|.+|++.||+++|+.+..+++++..+|.+.+.+..
T Consensus       280 -----------------~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~~~  341 (368)
T TIGR00903       280 -----------------RLALFAFIGIAGL-LMLPAYAIIMDWIGKFCDKELHGKAAGAIGFTSRAISVALALAAMLFIS  341 (368)
T ss_pred             -----------------cHHHHHHHHHHHH-hhhhhHHHHHHHHHHhcchhhcCcccchhhHHHHHHHHHHHHHHHHHhc
Confidence                             1222222332222 2223334566788999999999999999999999999999999988774


Q ss_pred             hhccchhhHHHHHHHHHHHHHHH
Q 008137          516 ALGSAGTFLLFAGFSLLGLVAIY  538 (576)
Q Consensus       516 ~~g~~~~~~~~~~~~~i~~~~~~  538 (576)
                        |....|.++++..+++.+..+
T Consensus       342 --~~~~~f~~~~~~~~i~~~~~~  362 (368)
T TIGR00903       342 --SAEAYFTFLAILITIAFAIAL  362 (368)
T ss_pred             --CHHHHHHHHHHHHHHHHHHHH
Confidence              666778888888888777764

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=100.00  E-value=4e-32  Score=288.25  Aligned_cols=380  Identities=13%  Similarity=0.075  Sum_probs=280.0

Q ss_pred             hHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHH
Q 008137           26 YIMKLALSAGIGGLLFGYDTGVISGALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADV  105 (576)
Q Consensus        26 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~  105 (576)
                      ..|.....++++.+..... ..+++++|.+++|++.+..+.   +++.+++.+++.+++++.|++.||+|||+++..+.+
T Consensus         7 ~~~~~~~~~~~~~~~~~~~-~~~~~~lp~i~~~~~~s~~~~---g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~   82 (393)
T PRK09705          7 LNFMLLVLVLIGLNMRPLL-TSVGPLLPQLRQASGMSFSVA---ALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLL   82 (393)
T ss_pred             hHHHHHHHHHHHHHcchhh-hccchhHHHHHHHhCCCHHHH---HHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHH
Confidence            3455555666665554444 667899999999999999998   999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcchHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCch
Q 008137          106 LFFIGAIIMAIAPQPWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFTKAPGT  185 (576)
Q Consensus       106 ~~~i~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~  185 (576)
                      +++++.++++++++++.++++|+++|++.+...+....++.+++| ++|+++++++..+..+|..+++.+++.+.+...+
T Consensus        83 l~~~~~~~~~~a~~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~  161 (393)
T PRK09705         83 LIAVGALMRELYPQSALLLSSALLGGVGIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLVQHSET  161 (393)
T ss_pred             HHHHHHHHHHHCcchHHHHHHHHHHHhHHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            999999999999999999999999999999999999999999997 7899999999999999999999999988877645


Q ss_pred             hHHHHHHhHHHHHHHHHHHhhcc-CChhHHhhcCCHHHHHHHHHHhCCchhhhHHHHHHHHHHHhhhhhhcccchhhHHH
Q 008137          186 WRWMLGVAGLPAVVQFGLMMMLP-ESPRWLYRQNKVDEARAILEKIYPADQVEEEVNLLKQSVENEKAEEGLIGKDMISR  264 (576)
Q Consensus       186 Wr~~f~v~~~~~~~~~~~~~~l~-esp~~l~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (576)
                      ||+.+.+.++..++.+..++... +.|+    + +  +                            + .+        .+
T Consensus       162 w~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-~--~----------------------------~-~~--------~~  197 (393)
T PRK09705        162 WYQTLAWWALPAVVALFAWWWQSAREVA----S-S--H----------------------------K-TT--------TT  197 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCc----c-c--c----------------------------C-CC--------cC
Confidence            99998776666554443333322 2111    0 0  0                            0 00        00


Q ss_pred             hhhhcccchhhhhhHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcCCchhHHHHHHHHHhHHHHHHHHHHHHhhcccCChH
Q 008137          265 LKGAFGNKIVRRGLYAGVTVQVAQQFVGINTVMYYSPTIVQFAGFASKSTALALSLVTSGLNALGSIVSMAFVDKYGRRR  344 (576)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dk~grr~  344 (576)
                      .++.++++..+     ............+.....|.|.++++.+. +..+++.......+++++++++.+++.||++||+
T Consensus       198 ~~~~l~~~~~~-----~l~~~~~~~~~~~~~~~~~lp~~l~~~g~-s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~  271 (393)
T PRK09705        198 PVRVVFTPRAW-----TLGVYFGLINGGYASLIAWLPAFYIEIGA-SAQYSGSLLALMTLGQAAGALLMPAMARHQDRRK  271 (393)
T ss_pred             CcccccCHhHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHcCC-ChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchH
Confidence            11122222221     12222233344556677788888888655 6777888888889999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccccccCCCCCCCCcccccCCCCcccccccccccccccCCCCCCCCCCc
Q 008137          345 LMIVSMFGLSSCLVALAVVFFQAAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAHKGNEYLPGA  424 (576)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  424 (576)
                      .+..+..+..++..++.....                                                           
T Consensus       272 ~~~~~~~l~~~~~~~~~~~~~-----------------------------------------------------------  292 (393)
T PRK09705        272 LLMLALVLQLVGFCGFIWLPL-----------------------------------------------------------  292 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHccc-----------------------------------------------------------
Confidence            888776666665554332210                                                           


Q ss_pred             ccccccccccccccccccccccCCCCcchhHHHHHHHHHHHHhcCCcccccchhccccc-cccccccchhHHHHHHHHHH
Q 008137          425 CLIDEKSTDTLCSDEHRTYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEIY-PLRYRGVGGGIAAVSNWTSN  503 (576)
Q Consensus       425 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~-p~~~rg~~~g~~~~~~~~g~  503 (576)
                                                . ... + ...+.+.+.+ +..+.......+.. |++.+|+..|+.+....++.
T Consensus       293 --------------------------~-~~~-~-~~~l~g~g~g-~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~  342 (393)
T PRK09705        293 --------------------------Q-LPV-L-WAMVCGLGLG-GAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIA  342 (393)
T ss_pred             --------------------------h-HHH-H-HHHHHHHhcc-chHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHH
Confidence                                      0 011 1 1122223332 22333334444555 46789999999999999999


Q ss_pred             HHHHHHHHHHHHhhc-cchhhHHHHHHHHHHHHHHHhhccCCCCCCH
Q 008137          504 LIVSLTFLTLTEALG-SAGTFLLFAGFSLLGLVAIYLLVPETKGLAF  549 (576)
Q Consensus       504 ~~~~~~~~~l~~~~g-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  549 (576)
                      .++|.+.|++.|..| +...|.+..+++++..++.+.+.|||+++..
T Consensus       343 ~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  389 (393)
T PRK09705        343 GLAPWFSGVLRSISGNYLMDWAFHALCVVGLMIITLRFAPARFPQLW  389 (393)
T ss_pred             HHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhccccccchh
Confidence            999999999999986 5666777777777777777888899887653

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=100.00  E-value=7.8e-32  Score=291.32  Aligned_cols=401  Identities=15%  Similarity=0.092  Sum_probs=269.7

Q ss_pred             hhhHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHH
Q 008137           24 TPYIMKLALSAGIGGLLFGYDTGVISGALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGA  103 (576)
Q Consensus        24 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~  103 (576)
                      ++++|.++...++.....+.++..++...|.+.++ +.+..+.   +++.+++.+++.+++++.|+++||+|||++++++
T Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~-g~s~~~~---g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~   99 (452)
T PRK11273         24 RRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQ-GFSRGDL---GFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAG   99 (452)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHc-CCCHHHH---HHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHH
Confidence            44566666667777777888888888889999888 9888888   9999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcc----hHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHH-HHHHHHHH
Q 008137          104 DVLFFIGAIIMAIAP----QPWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQF-LAYLINLA  178 (576)
Q Consensus       104 ~~~~~i~~~~~~~~~----~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~-l~~~l~~~  178 (576)
                      .++++++.+++++++    +++.+++.|++.|++.|..++.....+.|++|+++|++++++++.+.++|.. .++++...
T Consensus       100 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~  179 (452)
T PRK11273        100 LILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLG  179 (452)
T ss_pred             HHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence            999999999888763    7888999999999999998888888999999999999999999999998864 45554433


Q ss_pred             hcCCCchhHHHHHHhHHHHHHHHH-HHhhccCChhHHhhcCCHHHHHHHHHHhCCchhhhHHHHHHHHHHHhhhhhhccc
Q 008137          179 FTKAPGTWRWMLGVAGLPAVVQFG-LMMMLPESPRWLYRQNKVDEARAILEKIYPADQVEEEVNLLKQSVENEKAEEGLI  257 (576)
Q Consensus       179 l~~~~~~Wr~~f~v~~~~~~~~~~-~~~~l~esp~~l~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (576)
                      +.... +||+.|++.+++.++..+ .++++||+|+....+.+ ++.++.      .   ..+       .. ..+.++  
T Consensus       180 ~~~~~-gw~~~f~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~------~---~~~-------~~-~~~~~~--  238 (452)
T PRK11273        180 MAWFN-DWHAALYMPAFAAILVALFAFAMMRDTPQSCGLPPI-EEYKND------Y---PDD-------YN-EKHEQE--  238 (452)
T ss_pred             HHHhc-cHHHHHHHHHHHHHHHHHHHHHHccCCHhhcCCCCh-hhhhhc------c---ccc-------cc-cccCCC--
Confidence            33333 599999998887766544 46667888754211111 110000      0   000       00 000000  


Q ss_pred             chhhHHHh-hhhcccchhhhhhHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcCCchhHHHHHHHHHhHHHHHHHHHHHHh
Q 008137          258 GKDMISRL-KGAFGNKIVRRGLYAGVTVQVAQQFVGINTVMYYSPTIVQFAGFASKSTALALSLVTSGLNALGSIVSMAF  336 (576)
Q Consensus       258 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l  336 (576)
                       .+..+.. +..++++.     ++...+..+......+....|.|.|+++..+.+...++....+..++.+++.++.|++
T Consensus       239 -~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l  312 (452)
T PRK11273        239 -LTAKQIFMQYVLPNKL-----LWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWM  312 (452)
T ss_pred             -ccHHHHHHHHHHcChH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             0000111 12333333     3333333333334455667788999987644466677777777888889999999999


Q ss_pred             hccc--CChHHHH-HHHHHHHHHHHHHHHHHHHhhhcCCCccccccccCCCCCCCCcccccCCCCccccccccccccccc
Q 008137          337 VDKY--GRRRLMI-VSMFGLSSCLVALAVVFFQAAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFC  413 (576)
Q Consensus       337 ~dk~--grr~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  413 (576)
                      +||+  +||.... ..+.+..++.+++... . .                                              
T Consensus       313 ~dr~~~~r~~~~~~~~~~l~~~~~~~~~~~-~-~----------------------------------------------  344 (452)
T PRK11273        313 SDKVFRGNRGATGVFFMTLVTIATIVYWLN-P-A----------------------------------------------  344 (452)
T ss_pred             HHHHccCCcchHHHHHHHHHHHHHHHHHHh-c-c----------------------------------------------
Confidence            9998  4554322 2222222222221111 0 0                                              


Q ss_pred             CCCCCCCCCCcccccccccccccccccccccccCCCCcchhHHHHHHHHHHHHhcCCcccccchhccccccccccccchh
Q 008137          414 AHKGNEYLPGACLIDEKSTDTLCSDEHRTYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEIYPLRYRGVGGG  493 (576)
Q Consensus       414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~~~g  493 (576)
                                                           ...+..++.+...+.... +.......+..|.+|++.||+++|
T Consensus       345 -------------------------------------~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~p~~~~g~~~g  386 (452)
T PRK11273        345 -------------------------------------GNPTVDMACMIVIGFLIY-GPVMLIGLHALELAPKKAAGTAAG  386 (452)
T ss_pred             -------------------------------------cChHHHHHHHHHHHHHHH-hHHHHHHHHHHHHcChhhhhhHHH
Confidence                                                 001111222222222111 111122345679999999999999


Q ss_pred             HHHHHHHHHHHH-HHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHhhc
Q 008137          494 IAAVSNWTSNLI-VSLTFLTLTEALGSAGTFLLFAGFSLLGLVAIYLLV  541 (576)
Q Consensus       494 ~~~~~~~~g~~~-~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~  541 (576)
                      +.+....+|+.+ +|.+.|.+.|..|+...|++.+++++++.+....+.
T Consensus       387 ~~~~~~~~g~~~~g~~v~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~  435 (452)
T PRK11273        387 FTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVM  435 (452)
T ss_pred             HHHHHHHHHHHHhhhhhHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHh
Confidence            999988888765 799999999999999999988888888777665433

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=100.00  E-value=2.2e-31  Score=291.08  Aligned_cols=388  Identities=14%  Similarity=0.062  Sum_probs=282.6

Q ss_pred             hHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHH
Q 008137           26 YIMKLALSAGIGGLLFGYDTGVISGALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADV  105 (576)
Q Consensus        26 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~  105 (576)
                      ++|..+..++++.++..+|.++++..+|.+.+++|.+..+.   +|+.+.+.++..++++++|+++||+|||++++++.+
T Consensus         3 ~~~~~~~~~~~~~~~~~ld~tiv~~a~p~i~~~l~~s~~~~---~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~   79 (495)
T PRK14995          3 RQWLTLVIIVLVYIPVAIDATVLHVAAPTLSMTLGASGNEL---LWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGT   79 (495)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHhHH---HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence            45778899999999999999999999999999999988888   999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcchHHHHHHHHHHHHhhhhhhhhhHHHHHHhcc-CcchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Q 008137          106 LFFIGAIIMAIAPQPWVIILGRIFVGLGVGMASMTAPLYISEAS-PAKIRGALVSANGFLITGGQFLAYLINLAFTKAPG  184 (576)
Q Consensus       106 ~~~i~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~-~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~  184 (576)
                      ++.++++++++++|++.++++|+++|+|.++..+.....+.+++ |+++|+++++++.....+|..+||++++.+.+..+
T Consensus        80 ~~~~~~~~~~~a~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~g  159 (495)
T PRK14995         80 LFGLASLAAAFSPTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEHFY  159 (495)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence            99999999999999999999999999999999998888887776 67999999999999999999999999999999887


Q ss_pred             hhHHHHHHhHHHHHHHHHH-HhhccCChhHHhhcCCHHHHHHHHH---------HhC-C-chhhhH-H-HHH-------H
Q 008137          185 TWRWMLGVAGLPAVVQFGL-MMMLPESPRWLYRQNKVDEARAILE---------KIY-P-ADQVEE-E-VNL-------L  243 (576)
Q Consensus       185 ~Wr~~f~v~~~~~~~~~~~-~~~l~esp~~l~~~~~~~~~~~~l~---------~i~-~-~~~~~~-~-~~~-------~  243 (576)
                       |||.|++...++++.+++ .+++||++...  +++.|.......         ... . .+.... . ...       .
T Consensus       160 -wr~~f~i~~~~~~~~~~l~~~~l~~~~~~~--~~~~d~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l  236 (495)
T PRK14995        160 -WGSVFLINVPIVLVVMGLTARYVPRQAGRR--DQPLNLGHALMLIVAILLLVYSAKTALKGFLSLWVTSLTLLTGALLL  236 (495)
T ss_pred             -hHHHHHHHHHHHHHHHHHHHHhCCCCCCCC--CCCCChHhHHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHH
Confidence             999999988777766554 55677765321  111121111000         000 0 000000 0 000       0


Q ss_pred             HH-HHHhhhhhhcccchhhHHHhhhhcccchhhhhhHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcCCchhHHHHHHHHH
Q 008137          244 KQ-SVENEKAEEGLIGKDMISRLKGAFGNKIVRRGLYAGVTVQVAQQFVGINTVMYYSPTIVQFAGFASKSTALALSLVT  322 (576)
Q Consensus       244 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (576)
                      .. ...+.+..++.      . ..+.++++     .+.......+..........++.|.+++...+.+..+++....+.
T Consensus       237 ~~f~~~e~~~~~p~------~-~~~lf~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~lq~v~g~s~~~ag~~~~~~  304 (495)
T PRK14995        237 GLFIRTQLAASRPM------I-DMRLFTHR-----IILSGVVMAMTAMITLVGFELLMAQELQFVHGLSPLEAGMFMLPV  304 (495)
T ss_pred             HHHHHHHhcCCCCC------c-CHHHhCCc-----ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence            00 00000000000      0 01233333     333333334444444556677889999987777889999999999


Q ss_pred             hHHHHHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccccccCCCCCCCCcccccCCCCcccc
Q 008137          323 SGLNALGSIVSMAFVDKYGRRRLMIVSMFGLSSCLVALAVVFFQAAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNC  402 (576)
Q Consensus       323 ~~~~~ig~~~~g~l~dk~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  402 (576)
                      .++..++.++.|++.||+|+|+.+..+.++..++.+++.....                                     
T Consensus       305 ~~~~~~~~~~~g~l~~r~g~~~~~~~g~~~~~~~~~~l~~~~~-------------------------------------  347 (495)
T PRK14995        305 MVASGFSGPIAGILVSRLGLRLVATGGMALSALSFYGLAMTDF-------------------------------------  347 (495)
T ss_pred             HHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHhcC-------------------------------------
Confidence            9999999999999999999999888887777666655443211                                     


Q ss_pred             cccccccccccCCCCCCCCCCcccccccccccccccccccccccCCCCcchhHHHHHHHHHHHHhcCCcccccchhcccc
Q 008137          403 MDCLKAKCGFCAHKGNEYLPGACLIDEKSTDTLCSDEHRTYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEI  482 (576)
Q Consensus       403 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~  482 (576)
                                                                     ....+......++.+++.+... +.......+.
T Consensus       348 -----------------------------------------------~~~~~~~~~~~~l~G~g~g~~~-~~~~~~~~~~  379 (495)
T PRK14995        348 -----------------------------------------------STQQWQAWGLMALLGFSAASAL-LASTSAIMAA  379 (495)
T ss_pred             -----------------------------------------------CCchHHHHHHHHHHHHhHHHHH-HHHHHHHHhc
Confidence                                                           0001222333444444443222 2334555677


Q ss_pred             ccccccccchhHHHHHHHHHHHHHHHHHHHHHHh
Q 008137          483 YPLRYRGVGGGIAAVSNWTSNLIVSLTFLTLTEA  516 (576)
Q Consensus       483 ~p~~~rg~~~g~~~~~~~~g~~~~~~~~~~l~~~  516 (576)
                      .|++.++.+.++.++...+|+.+++.+.+.+.+.
T Consensus       380 ~~~~~~g~~~~~~~~~~~lG~~~G~ai~g~i~~~  413 (495)
T PRK14995        380 APPEKAAAAGAIETMAYELGAGLGIAIFGLLLSR  413 (495)
T ss_pred             CCHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8999999999999999999999999999988764

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=100.00  E-value=7.6e-34  Score=289.12  Aligned_cols=438  Identities=22%  Similarity=0.322  Sum_probs=307.2

Q ss_pred             hhhHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhc-cch----hhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchH
Q 008137           24 TPYIMKLALSAGIGGLLFGYDTGVISGALLYIKEDFR-DVE----KKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKI   98 (576)
Q Consensus        24 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~-~~~----~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~   98 (576)
                      .++..+.+.+...+.+.+.||...++.+.|.+...+- .+.    -..-..+.+..+..+|.++||+++|++.||+|||+
T Consensus        36 qw~~fk~i~iAG~GfftDsYDlF~I~lVt~il~~lY~~~~~~~g~~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~GRK~  115 (538)
T KOG0252|consen   36 QWKHFKAIIIAGMGFFTDSYDLFSISLVTKILGYLYYHGDESGGHYPSGVLALVNAAALVGTIFGQLFFGWLGDKFGRKK  115 (538)
T ss_pred             hHHHHHHHHHhhhhhcccchhhhhHHHHHHHHHHHhcCCCCCCCcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcchh
Confidence            5677788888899999999999999999998877653 221    11122388999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhcc-------hHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHH
Q 008137           99 SLLGADVLFFIGAIIMAIAP-------QPWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFL  171 (576)
Q Consensus        99 ~~~~~~~~~~i~~~~~~~~~-------~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l  171 (576)
                      ++...++++.+++++++++.       -++++.+.|+++|+|.|+.+|.+.+..+|..-.+.||...+.+.+.++.|...
T Consensus       116 vYG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~RGa~iaavFa~Qg~Gila  195 (538)
T KOG0252|consen  116 VYGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKKTRGAFIAAVFAMQGFGILA  195 (538)
T ss_pred             hhhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccCCCcchHHHhhhhhhhccccceeEEEEEecchhHhh
Confidence            99999999999999888853       26889999999999999999999999999999999999998887777777766


Q ss_pred             HHHHHHHhc----CCC----------chhHHHHHHhHHHHHHHHHHHhhccCChhHHhhcC-CHHHHHHHHHHhCCchhh
Q 008137          172 AYLINLAFT----KAP----------GTWRWMLGVAGLPAVVQFGLMMMLPESPRWLYRQN-KVDEARAILEKIYPADQV  236 (576)
Q Consensus       172 ~~~l~~~l~----~~~----------~~Wr~~f~v~~~~~~~~~~~~~~l~esp~~l~~~~-~~~~~~~~l~~i~~~~~~  236 (576)
                      |.+++..+.    ...          +-||..|.+.++++++.+...+.+||++++..... +.+.+.+..++....   
T Consensus       196 G~ivt~Iv~~~fe~~~~~~~~~~~ld~vWRl~~glg~vpa~~~ly~Rl~M~Et~~Y~al~~~~~~~a~~d~~k~~~~---  272 (538)
T KOG0252|consen  196 GGIVALIVSAIFEKIFNGPSTYPHLDGVWRIIFGLGAVPALLVLYFRLKMPETARYTALVSKKLKQAAGDMKKVLSV---  272 (538)
T ss_pred             ccHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhHHHHhhcCHhhhhhcccccccc---
Confidence            665555433    211          13999999999999999999999999998863222 212221111110000   


Q ss_pred             hHHHHHHHHHHHhhhhhhcccchhhHHHhhhhcccchhhhhhHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcCCchhHHH
Q 008137          237 EEEVNLLKQSVENEKAEEGLIGKDMISRLKGAFGNKIVRRGLYAGVTVQVAQQFVGINTVMYYSPTIVQFAGFASKSTAL  316 (576)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (576)
                        +.   .....  .+......++....+...+..+ .-+.++.....++.. =..++....+...+++..+..+.....
T Consensus       273 --~~---~~~~~--~~~~~~~~~~~~~~F~~~f~~~-hg~~Llgt~~~WFll-Diafy~~nL~~s~I~~~ig~~~~~~~~  343 (538)
T KOG0252|consen  273 --DI---EAEST--AESDVPPPSNSFGLFSRLFLRW-HGKHLLGTAGTWFLL-DIAFYGQNLFQSVIFSAIGVIPSANTY  343 (538)
T ss_pred             --cc---chhhc--cccCCCCcccccchHHHHHHHH-HHHHHHHHHHHHHhh-hhhhhccccHHHHHHHhhccCCCcchH
Confidence              00   00000  0000000000001111111111 112223322222222 223445555666666655543322211


Q ss_pred             -------HH-HHHHhHHHHHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccccccCCCCCCC
Q 008137          317 -------AL-SLVTSGLNALGSIVSMAFVDKYGRRRLMIVSMFGLSSCLVALAVVFFQAAIHAPTVSQIESSHFGGNNTC  388 (576)
Q Consensus       317 -------~~-~~~~~~~~~ig~~~~g~l~dk~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  388 (576)
                             .. ..+...+.++|.++...++|++|||+..+.+++++.+.++.++.......                    
T Consensus       344 ~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk~iq~~GF~~~~i~~~~~~~~y~~~~--------------------  403 (538)
T KOG0252|consen  344 HELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRKYIQLMGFFIMTIFFFVIAGPYNQLE--------------------  403 (538)
T ss_pred             HHHHHHHHHHHHHHHHccCCceeEEEEEeehhhhHHHHHhhHHHHHHHHHHHcCCccccc--------------------
Confidence                   11 12233334557888889999999999999999998888777665533100                    


Q ss_pred             CcccccCCCCcccccccccccccccCCCCCCCCCCcccccccccccccccccccccccCCCCcchhHHHHHHHHHHHHhc
Q 008137          389 PAYITDGNAKSWNCMDCLKAKCGFCAHKGNEYLPGACLIDEKSTDTLCSDEHRTYFISGCPSSFGWLAVVFLGAYIITYS  468 (576)
Q Consensus       389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~  468 (576)
                                         ..                                            ...+++..+..++..
T Consensus       404 -------------------~~--------------------------------------------~Gf~v~y~l~~ff~N  420 (538)
T KOG0252|consen  404 -------------------NT--------------------------------------------IGFVVLYSLTFFFGN  420 (538)
T ss_pred             -------------------cc--------------------------------------------CceeehHHHHHHHHh
Confidence                               01                                            122455556666677


Q ss_pred             CCcccccchhccccccccccccchhHHHHHHHHHHHHHHHHHHHHHH-----hhccchhhHHHHHHHHHHHHHHHhhccC
Q 008137          469 PGMGTAPWIVNSEIYPLRYRGVGGGIAAVSNWTSNLIVSLTFLTLTE-----ALGSAGTFLLFAGFSLLGLVAIYLLVPE  543 (576)
Q Consensus       469 ~~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~g~~~~~~~~~~l~~-----~~g~~~~~~~~~~~~~i~~~~~~~~~~~  543 (576)
                      +|.+.....+.+|.+|++.||+..|+...++..|++++...+.++.+     ..|.+.++++++++++++.+..+ ++||
T Consensus       421 FGPn~ttfivpaE~FParvR~t~hGIsAA~GK~GAivg~~~F~~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T~-l~pE  499 (538)
T KOG0252|consen  421 FGPNATTFIVPAEIFPARVRSTCHGISAASGKAGAIVGAFGFLYLTDHNYPPNIGVRNVFIILAGCMLLGILFTL-LIPE  499 (538)
T ss_pred             cCCCceeEEeehhhchHHHhhhhhhHHHHhccchHHHHHHHhhHhhhccCCccccchHHHHHHHHHHHHhHheeE-Eeec
Confidence            78777888999999999999999999999999999999999999999     78888899999999999988874 4789


Q ss_pred             CCCCCHHHHHHHHh
Q 008137          544 TKGLAFEEVEKMLE  557 (576)
Q Consensus       544 ~~~~~~~~~~~~~~  557 (576)
                      |++++++|++++.+
T Consensus       500 tk~~~leei~~e~~  513 (538)
T KOG0252|consen  500 TKGKSLEEISNEEE  513 (538)
T ss_pred             ccccCHHHhcChhh
Confidence            99999999866544

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=100.00  E-value=4e-32  Score=284.01  Aligned_cols=360  Identities=16%  Similarity=0.080  Sum_probs=265.0

Q ss_pred             hhhhhhhHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHhcchH
Q 008137           41 FGYDTGVISGALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFIGAIIMAIAPQP  120 (576)
Q Consensus        41 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~  120 (576)
                      .......+++..|.+.++++.++.+.   +++.+++.++..+++++.|+++||+|||+++.++.++.+++.+++++++++
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~s~~~~---g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~   91 (377)
T TIGR00890        15 TSGYVYTWTLLAPPLGRYFGVGVTAV---AIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAIADSL   91 (377)
T ss_pred             HhhHHhhhhhHHHHHHHHhCCCHHHH---HHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHHHHHHHHHH
Confidence            33346678899999999999998888   999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHhHHHHHHH
Q 008137          121 WVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFTKAPGTWRWMLGVAGLPAVVQ  200 (576)
Q Consensus       121 ~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~Wr~~f~v~~~~~~~~  200 (576)
                      +.++++|++.|++.+...+.....+.|++| ++|+++.++...+.++|..+++++.+.+.+..+ ||+.|++.+++.++.
T Consensus        92 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~f~~~~~~~~~~  169 (377)
T TIGR00890        92 AALYLTYGLASAGVGIAYGIALNTAVKWFP-DKRGLASGIIIGGYGLGSFILSPLITSVINLEG-VPAAFIYMGIIFLLV  169 (377)
T ss_pred             HHHHHHHHHHhHHHHHHHHhHHHHHHHHcC-cccHHHHHHHHHhcchhHhHHHHHHHHHHhccc-HHHHHHHHHHHHHHH
Confidence            999999999999999998888899999997 579999999999999999887777777666655 999999999888777


Q ss_pred             HHHH-hhccCChhHHhhcCCHHHHHHHHHHhCCchhhhHHHHHHHHHHHhhhhhhcccchhhHHHhhhhcccchhhhhhH
Q 008137          201 FGLM-MMLPESPRWLYRQNKVDEARAILEKIYPADQVEEEVNLLKQSVENEKAEEGLIGKDMISRLKGAFGNKIVRRGLY  279 (576)
Q Consensus       201 ~~~~-~~l~esp~~l~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (576)
                      .+.. ++++++|+...++++ +.              +               .+       ..+.++.++++..+.   
T Consensus       170 ~~~~~~~~~~~~~~~~~~~~-~~--------------~---------------~~-------~~~~~~~~~~~~~~~---  209 (377)
T TIGR00890       170 IVLGAFLIGYPPGQLIKTNI-EV--------------S---------------VK-------DYTVWEMLRTPQFWV---  209 (377)
T ss_pred             HHHHHHheecCchhccccCc-cc--------------c---------------hh-------hhhHHHHHcCccHHH---
Confidence            6654 445544321100000 00              0               00       011223344443322   


Q ss_pred             HHHHHHHHHHHHhhHHHHhhhHHHHHhhcCCchhHHHHHHHHHhHHHHHHHHHHHHhhcccCChHHHHHHHHHHHHHHHH
Q 008137          280 AGVTVQVAQQFVGINTVMYYSPTIVQFAGFASKSTALALSLVTSGLNALGSIVSMAFVDKYGRRRLMIVSMFGLSSCLVA  359 (576)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dk~grr~~~~~~~~~~~~~~~~  359 (576)
                        .....+...........+.+.+.++.+. +....+.......++.++++++.|++.||++||+.+..+.++..++.++
T Consensus       210 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~  286 (377)
T TIGR00890       210 --LYLSFFLNAVSGLLLIGLYKPYGQSLGL-SDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAA  286 (377)
T ss_pred             --HHHHHHHHhHHHHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHH
Confidence              1111121222222333344556666665 5566677778888889999999999999999999988887777777665


Q ss_pred             HHHHHHHhhhcCCCccccccccCCCCCCCCcccccCCCCcccccccccccccccCCCCCCCCCCcccccccccccccccc
Q 008137          360 LAVVFFQAAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAHKGNEYLPGACLIDEKSTDTLCSDE  439 (576)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  439 (576)
                      +......                                                                         
T Consensus       287 ~~~~~~~-------------------------------------------------------------------------  293 (377)
T TIGR00890       287 MLFIPML-------------------------------------------------------------------------  293 (377)
T ss_pred             HHHcccc-------------------------------------------------------------------------
Confidence            4432110                                                                         


Q ss_pred             cccccccCCCCcchhHHHHHHHHHHHHhcCCcccccchhccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 008137          440 HRTYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEIYPLRYRGVGGGIAAVSNWTSNLIVSLTFLTLTEALGS  519 (576)
Q Consensus       440 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~g~~~~~~~~~~l~~~~g~  519 (576)
                                  ..+..+....+.....+ ...+....+..|.+|++.|++..|+.+....+|..++|.+.+.+.+..|+
T Consensus       294 ------------~~~~~~~~~~~~g~~~g-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~  360 (377)
T TIGR00890       294 ------------NDVLFLATVALVFFTWG-GTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEIGF  360 (377)
T ss_pred             ------------hhHHHHHHHHHHHHHhc-cchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhch
Confidence                        01222222233333333 22334456778999999999999999999999999999999999999999


Q ss_pred             chhhHHHHHHHHHHH
Q 008137          520 AGTFLLFAGFSLLGL  534 (576)
Q Consensus       520 ~~~~~~~~~~~~i~~  534 (576)
                      ...|.+.+++++++.
T Consensus       361 ~~~f~~~~~~~~~~~  375 (377)
T TIGR00890       361 EYTFIVTGAFALTSL  375 (377)
T ss_pred             hhHHHHHHHHHHHhc
Confidence            988888887777654

>TIGR00893 2A0114 d-galactonate transporter

Probab=100.00  E-value=1.5e-31  Score=280.73  Aligned_cols=392  Identities=18%  Similarity=0.197  Sum_probs=281.0

Q ss_pred             HHhhhhhhhhHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHhc
Q 008137           38 GLLFGYDTGVISGALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFIGAIIMAIA  117 (576)
Q Consensus        38 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~~  117 (576)
                      .++..+|+..++...|.+.++++.+..+.   +++.+++.++..+++++.|+++||+|||+++.++.++++++.++++++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~---~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~   79 (399)
T TIGR00893         3 TVINYLDRANLSFAAPMLQEDLGLSAAQY---GYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFA   79 (399)
T ss_pred             ehHHHHHHHhhhHhHHHHHHhhCCChhhH---HHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHH
Confidence            35677888999999999999999998888   999999999999999999999999999999999999999999999999


Q ss_pred             chHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHhHHHH
Q 008137          118 PQPWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFTKAPGTWRWMLGVAGLPA  197 (576)
Q Consensus       118 ~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~Wr~~f~v~~~~~  197 (576)
                      ++++.++++|++.|++.+...+....++.|++|+++|++++++.+....+|..+++.+++.+.+..+ ||+.|++.+++.
T Consensus        80 ~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~-~~~~~~~~~~~~  158 (399)
T TIGR00893        80 GAYVSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFS-WQWAFIIEGVLG  158 (399)
T ss_pred             cCHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCC-chHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999998887776 999999988887


Q ss_pred             HHHHHHH-hhccCChhHHhhcCCHHHHHHHHHHhCCchhhhHHHHHHHHHHHhhhhhhcccchhhHHHhhhhcccchhhh
Q 008137          198 VVQFGLM-MMLPESPRWLYRQNKVDEARAILEKIYPADQVEEEVNLLKQSVENEKAEEGLIGKDMISRLKGAFGNKIVRR  276 (576)
Q Consensus       198 ~~~~~~~-~~l~esp~~l~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (576)
                      ++..+.. +..||+|+..... +.++........             ....+ +.+.    .+......++.++++..  
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-------------~~~~~-~~~~----~~~~~~~~~~~~~~~~~--  217 (399)
T TIGR00893       159 IIWGVLWLKFIPDPPQKAKWL-TEEEKYIVVGGL-------------LAEQQ-GKGP----STPKKYQIKELLKDRRV--  217 (399)
T ss_pred             HHHHHHhhheecCCCCccccC-CHHHHhhcchhh-------------ccccc-cccc----cCCCccchHHHhcCHHH--
Confidence            7766554 4456654321111 111000000000             00000 0000    00011233444444432  


Q ss_pred             hhHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcCCchhHHHHHHHHHhHHHHHHHHHHHHhhcccCChHHH-HHHHHHHHH
Q 008137          277 GLYAGVTVQVAQQFVGINTVMYYSPTIVQFAGFASKSTALALSLVTSGLNALGSIVSMAFVDKYGRRRLM-IVSMFGLSS  355 (576)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dk~grr~~~-~~~~~~~~~  355 (576)
                         +......+...........+.|.++++..+.+..+.+.......++++++.++.++++||++||+.. ........+
T Consensus       218 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  294 (399)
T TIGR00893       218 ---WGLALGQFLVNIGLGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAII  294 (399)
T ss_pred             ---HHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHH
Confidence               2233334444445566777888888776555777788888888888999999999999999998621 111111112


Q ss_pred             HHHHHHHHHHHhhhcCCCccccccccCCCCCCCCcccccCCCCcccccccccccccccCCCCCCCCCCcccccccccccc
Q 008137          356 CLVALAVVFFQAAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAHKGNEYLPGACLIDEKSTDTL  435 (576)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  435 (576)
                      +.+...........                                                                  
T Consensus       295 ~~~~~~~~~~~~~~------------------------------------------------------------------  308 (399)
T TIGR00893       295 AGLVLSLLMFATNY------------------------------------------------------------------  308 (399)
T ss_pred             HHHHHHHHHHHhcc------------------------------------------------------------------
Confidence            21111111110000                                                                  


Q ss_pred             cccccccccccCCCCcchhHHHHHHHHHHHHhcCCcccccchhccccccccccccchhHHHHHHHHHHHHHHHHHHHHHH
Q 008137          436 CSDEHRTYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEIYPLRYRGVGGGIAAVSNWTSNLIVSLTFLTLTE  515 (576)
Q Consensus       436 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~g~~~~~~~~~~l~~  515 (576)
                                    .+..+..+ .... ...+..+..+..+.+..|.+|++.||++.|+.+....+|+.++|.+.+.+.+
T Consensus       309 --------------~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~  372 (399)
T TIGR00893       309 --------------VNIPYAAL-ALVA-LGFFGLGAGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAA  372 (399)
T ss_pred             --------------chhHHHHH-HHHH-HHHhchhhhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhcc
Confidence                          00012222 2222 2223333567778899999999999999999999999999999999999999


Q ss_pred             hhc-cchhhHHHHHHHHHHHHHHHh
Q 008137          516 ALG-SAGTFLLFAGFSLLGLVAIYL  539 (576)
Q Consensus       516 ~~g-~~~~~~~~~~~~~i~~~~~~~  539 (576)
                      ..| +...+++.+++.+++.+..++
T Consensus       373 ~~g~~~~~~~~~~~~~~~~~~~~~~  397 (399)
T TIGR00893       373 TTGSFAGALMVVAALALIGALSYLL  397 (399)
T ss_pred             CCCchhHHHHHHHHHHHHHHHHHHH
Confidence            988 888888888887777666543

>PRK03699 putative transporter; Provisional

Probab=100.00  E-value=5.9e-31  Score=279.36  Aligned_cols=376  Identities=14%  Similarity=0.056  Sum_probs=276.4

Q ss_pred             hhHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHH
Q 008137           25 PYIMKLALSAGIGGLLFGYDTGVISGALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGAD  104 (576)
Q Consensus        25 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~  104 (576)
                      ..+++.....+++.++.+.+...+++.+|.+.++++.+..+.   +++.+.+.+++.+++++.|++.||+|||+++..+.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~s~~~~---g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~   79 (394)
T PRK03699          3 SNRIKLTWISFLSYALTGALVIVTGMVMGPIAEYFNLPVSSM---SNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGF   79 (394)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            345566667778888999999999999999999999998888   99999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcchHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Q 008137          105 VLFFIGAIIMAIAPQPWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFTKAPG  184 (576)
Q Consensus       105 ~~~~i~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~  184 (576)
                      ++.+++.++++++++++.+++.|+++|++.|...+....++.|++|+++|+++++..+....+|..++|.+.+.+.....
T Consensus        80 ~~~~i~~~l~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~  159 (394)
T PRK03699         80 ALMILAVAGLMFSHSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLLARSI  159 (394)
T ss_pred             HHHHHHHHHHHHcchHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999998887754333


Q ss_pred             hhHHHHHHhHHHHHHHHHHHhhccCChhHHhhcCCHHHHHHHHHHhCCchhhhHHHHHHHHHHHhhhhhhcccchhhHHH
Q 008137          185 TWRWMLGVAGLPAVVQFGLMMMLPESPRWLYRQNKVDEARAILEKIYPADQVEEEVNLLKQSVENEKAEEGLIGKDMISR  264 (576)
Q Consensus       185 ~Wr~~f~v~~~~~~~~~~~~~~l~esp~~l~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (576)
                      +||+.|++.+++.++..+..++ .+.|+.. ++.+ +                              +.+        +.
T Consensus       160 gw~~~f~~~~~~~~~~~~~~~~-~~~p~~~-~~~~-~------------------------------~~~--------~~  198 (394)
T PRK03699        160 EWYWVYACIGLVYVAIFILTLF-SEFPALG-KHAP-K------------------------------ADK--------PV  198 (394)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHh-cCCcccc-ccCc-c------------------------------ccC--------cc
Confidence            4999999988877665544333 2222100 0000 0                              000        00


Q ss_pred             hhhhcccchhhhhhHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcCCchhHHHHHHHHHhHHHHHHHHHHHHhhcccCChH
Q 008137          265 LKGAFGNKIVRRGLYAGVTVQVAQQFVGINTVMYYSPTIVQFAGFASKSTALALSLVTSGLNALGSIVSMAFVDKYGRRR  344 (576)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dk~grr~  344 (576)
                      .++     ..++. ++...+..+........+..|.|.|+++..+.+..+++.+.....++.+++.++.++++||++||+
T Consensus       199 ~~~-----~~~~~-~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~  272 (394)
T PRK03699        199 AKE-----KWGIG-VLFLAIAALLYILAQLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQR  272 (394)
T ss_pred             ccc-----cCChH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhh
Confidence            000     01111 222223333333445567788999997665557777888878888889999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccccccCCCCCCCCcccccCCCCcccccccccccccccCCCCCCCCCCc
Q 008137          345 LMIVSMFGLSSCLVALAVVFFQAAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAHKGNEYLPGA  424 (576)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  424 (576)
                      .+.....+..+..+++....                                                            
T Consensus       273 ~l~~~~~~~~~~~~~~~~~~------------------------------------------------------------  292 (394)
T PRK03699        273 ILTVLAGLALVLMYLFVNTD------------------------------------------------------------  292 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHcC------------------------------------------------------------
Confidence            88776655544433332110                                                            


Q ss_pred             ccccccccccccccccccccccCCCCcchhHHHHHHHHHHHHhcCCcccccchhccccccccccccchhHHHHHHHHHHH
Q 008137          425 CLIDEKSTDTLCSDEHRTYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEIYPLRYRGVGGGIAAVSNWTSNL  504 (576)
Q Consensus       425 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~g~~  504 (576)
                                                + .+...+..+..+++.. +..+....+..|..| +.++...|.......+|..
T Consensus       293 --------------------------~-~~~~~~~~~~~G~~~~-~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~  343 (394)
T PRK03699        293 --------------------------D-PSHLLYAILGLGFFSS-AIYTTIITLGSQQTK-VASPKLVNFILTCGTIGTM  343 (394)
T ss_pred             --------------------------C-chHHHHHHHHHHHHHH-HHHHHHHHHHHHHcc-CCCHHHHHHHHHhhhHHHH
Confidence                                      0 0122222222322222 233344445566655 4456778888889999999


Q ss_pred             HHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHh
Q 008137          505 IVSLTFLTLTEALGSAGTFLLFAGFSLLGLVAIYL  539 (576)
Q Consensus       505 ~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~  539 (576)
                      ++|.+.|.+.+..|++..++..+++.+++.+.+..
T Consensus       344 i~p~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~  378 (394)
T PRK03699        344 LTFVVTSPIVAHFGLQAALLTANGLYAVVFVMCIL  378 (394)
T ss_pred             HHHHHHHHHHHHhCchhhhhhhHHHHHHHHHHHHH
Confidence            99999999999999998988888887777665544

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=100.00  E-value=1.5e-31  Score=289.17  Aligned_cols=398  Identities=11%  Similarity=0.021  Sum_probs=273.4

Q ss_pred             hchhhHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHH
Q 008137           22 WTTPYIMKLALSAGIGGLLFGYDTGVISGALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLL  101 (576)
Q Consensus        22 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~  101 (576)
                      +...++|.++..+.+.......+...++..+|.+.++++.+..+.   +++.+.+.++..++.++.|+++||+|||++++
T Consensus        12 ~~~~~~w~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~s~~~~---~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~   88 (455)
T TIGR00892        12 PDGGWGWVVLGATFVSIGFSYAFPKAVTVFFKELQQIFQATYSET---AWISSIMLAVLYAGGPISSILVNRFGCRPVVI   88 (455)
T ss_pred             CCCCcchHHHHHHHHHHHHHHhhhcchhhhHHHHHHHhCcchhHH---HHHHHHHHHHHHHhhHHHHHHHHHcCchHHHH
Confidence            445677888877777776666667778889999999999998888   99999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhcchHHHHHH-HHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 008137          102 GADVLFFIGAIIMAIAPQPWVIIL-GRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFT  180 (576)
Q Consensus       102 ~~~~~~~i~~~~~~~~~~~~~l~~-~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~  180 (576)
                      ++.+++++++++++++++++.+++ .|+++|++.+...+....++.++++ ++|+++.++.+.+..+|..+++++++.+.
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~  167 (455)
T TIGR00892        89 AGGLLASLGMILASFSSNVIELYLTAGFITGLGLAFNFQPSLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYLF  167 (455)
T ss_pred             hhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence            999999999999999999998875 5799999999877888888999996 78999999999999999999999999988


Q ss_pred             CCCchhHHHHHHhHHHHHHHHHHHhhccCChhHHhhcCCHHHHHHHHHHhCCchhhhHHHHHHHHHHHhhhhhhcccchh
Q 008137          181 KAPGTWRWMLGVAGLPAVVQFGLMMMLPESPRWLYRQNKVDEARAILEKIYPADQVEEEVNLLKQSVENEKAEEGLIGKD  260 (576)
Q Consensus       181 ~~~~~Wr~~f~v~~~~~~~~~~~~~~l~esp~~l~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (576)
                      +..+ ||+.|++.+++.++..+..+++.+.+.... +.+.++ .+   ........+ +.         ....   ..++
T Consensus       168 ~~~g-wr~~f~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~-~~---~~~~~~~~~-~~---------~~~~---~~~~  228 (455)
T TIGR00892       168 ESFG-WRGSFLILGGLLLHCCVCGALMRPVGPSQR-VSKSKS-KE---GLPPDGSTK-KL---------SKKS---TAEK  228 (455)
T ss_pred             HHhC-hHHHHHHHHHHHHHHHHHHHHhCCCCcccc-cccccc-cc---cCCCCCccc-cc---------cccc---hhhh
Confidence            8776 999999999887766555444332211000 000000 00   000000000 00         0000   0000


Q ss_pred             hHHHh--hhhcccchhhhhhHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcCCchhHHHHHHHHHhHHHHHHHHHHHHhhc
Q 008137          261 MISRL--KGAFGNKIVRRGLYAGVTVQVAQQFVGINTVMYYSPTIVQFAGFASKSTALALSLVTSGLNALGSIVSMAFVD  338 (576)
Q Consensus       261 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~d  338 (576)
                      . .+.  .+.++++.+     +......+....+......+.|.|.++.+. +...++.+....+++.+++.++.+++.|
T Consensus       229 ~-~~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~l~~~~~~~g~-s~~~~g~~~~~~~~~~~~~~~~~g~l~d  301 (455)
T TIGR00892       229 I-NRFLDFSLFTHRGF-----LVYLSGNVIMFLGFFAPIIFLVPYAKDKGV-DEYEAAFLLSIIGFVDIFARPSCGLIAG  301 (455)
T ss_pred             h-hhhcchHHhcCchH-----HHHHHHHHHHHHHccchHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            0 000  123444433     222223333333445556677888877665 6677778878888889999999999999


Q ss_pred             cc--CChHHHHHHH--HHHHHHHHHHHHHHHHhhhcCCCccccccccCCCCCCCCcccccCCCCcccccccccccccccC
Q 008137          339 KY--GRRRLMIVSM--FGLSSCLVALAVVFFQAAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCA  414 (576)
Q Consensus       339 k~--grr~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  414 (576)
                      |.  ++|+....+.  ++..++.+++....                                                  
T Consensus       302 ~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~--------------------------------------------------  331 (455)
T TIGR00892       302 LKWIRPHVQYLFSFALLFNGLTHLLCALAG--------------------------------------------------  331 (455)
T ss_pred             ccccCHHHHHHHHHHHHHHHHHHHHHHHhc--------------------------------------------------
Confidence            74  3343333322  22222222221110                                                  


Q ss_pred             CCCCCCCCCcccccccccccccccccccccccCCCCcchhHHHHHHHHHHHHhcCCcccccchhccccccccccccchhH
Q 008137          415 HKGNEYLPGACLIDEKSTDTLCSDEHRTYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEIYPLRYRGVGGGI  494 (576)
Q Consensus       415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~~~g~  494 (576)
                                                           ..+..++...+.+++++ ...+....+..|.+|++.+++..|+
T Consensus       332 -------------------------------------~~~~~~i~~~~~G~~~g-~~~~~~~~~~~~~~~~~~~g~~~g~  373 (455)
T TIGR00892       332 -------------------------------------DYTGLVIYCIFFGLSFG-SVGALLFEVLMDLVGAQRFSSAVGL  373 (455)
T ss_pred             -------------------------------------hHHHHHHHHHHHHHHhc-hHHHHHHHHHHHHhhHHHHhhHHhH
Confidence                                                 01333334444444443 3334556777899999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhc-cchhhHHHHHHHHHHHHHH
Q 008137          495 AAVSNWTSNLIVSLTFLTLTEALG-SAGTFLLFAGFSLLGLVAI  537 (576)
Q Consensus       495 ~~~~~~~g~~~~~~~~~~l~~~~g-~~~~~~~~~~~~~i~~~~~  537 (576)
                      .+....+|.+++|.+.|.+.+..| +...|++.+++.+++.+..
T Consensus       374 ~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~~~~li~~~~~  417 (455)
T TIGR00892       374 VTIVECCAVLIGPPLAGRLVDATKNYKYIFYASGSIVVSAGLFL  417 (455)
T ss_pred             HHHHHHHHHHccccceeeeehhcCCcchHHHHhhHHHHHHHHHH
Confidence            999999999999999999999874 7778888877776665543

>PRK10489 enterobactin exporter EntS; Provisional

Probab=100.00  E-value=5.7e-31  Score=281.51  Aligned_cols=383  Identities=15%  Similarity=0.089  Sum_probs=281.9

Q ss_pred             HHHhhhhhhhhHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHh
Q 008137           37 GGLLFGYDTGVISGALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFIGAIIMAI  116 (576)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~  116 (576)
                      +.++..+......+.+|.+.++++.+..+.   |++.+.+.++..+++++.|+++||+|||+++.++.++.+++.+..+.
T Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~---g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~  101 (417)
T PRK10489         25 ARFISIFGLGLLGVAVPVQIQMMTGSTLQV---GLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLAL  101 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCHHHH---HHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHHH
Confidence            345566666778888999999998877776   99999999999999999999999999999999988888877665542


Q ss_pred             -----cchHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHH
Q 008137          117 -----APQPWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFTKAPGTWRWMLG  191 (576)
Q Consensus       117 -----~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~Wr~~f~  191 (576)
                           .++++.+++.|++.|++.+...+...+++.|++|+++|+++.++.+...++|..+|+.+++.+.+..+ |||.|+
T Consensus       102 ~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~~-~~~~~~  180 (417)
T PRK10489        102 NAFLPEPSLLAIYLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIAAGG-VAWNYG  180 (417)
T ss_pred             HHHcCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHh-hHHHHH
Confidence                 56789999999999999998889999999999999999999999999999999999999999887665 999999


Q ss_pred             HhHHHHHHHHHHHhhccCChhHHhhcCCHHHHHHHHHHhCCchhhhHHHHHHHHHHHhhhhhhcccchhhHHHhhhhccc
Q 008137          192 VAGLPAVVQFGLMMMLPESPRWLYRQNKVDEARAILEKIYPADQVEEEVNLLKQSVENEKAEEGLIGKDMISRLKGAFGN  271 (576)
Q Consensus       192 v~~~~~~~~~~~~~~l~esp~~l~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (576)
                      +.++..++..+..+.+|++++....++  +..                                   ++..+..+..+++
T Consensus       181 ~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~-----------------------------------~~~~~~~~~~~~~  223 (417)
T PRK10489        181 LAAAGTFITLLPLLRLPALPPPPQPRE--HPL-----------------------------------RSLLAGFRFLLAS  223 (417)
T ss_pred             HHHHHHHHHHHHHHhCCCCCCCCcccc--cch-----------------------------------HHHHHHHHHHHcC
Confidence            988877776666667777543110000  000                                   0000222334444


Q ss_pred             chhhhhhHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcCCchhHHHHHHHHHhHHHHHHHHHHHHhhcccCChHHHHHHHH
Q 008137          272 KIVRRGLYAGVTVQVAQQFVGINTVMYYSPTIVQFAGFASKSTALALSLVTSGLNALGSIVSMAFVDKYGRRRLMIVSMF  351 (576)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dk~grr~~~~~~~~  351 (576)
                      +..+...+..    .+. . .......+.|.+.++..+.+....+.+.....++.+++.++.+++.||.++++.+..+..
T Consensus       224 ~~~~~~~~~~----~~~-~-~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~  297 (417)
T PRK10489        224 PVVGGIALLG----GLL-T-MASAVRVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTL  297 (417)
T ss_pred             hHHHHHHHHH----HHH-H-HHHhHHHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHH
Confidence            4333221111    111 1 123455677888888444467777888788888899999999999999777777777666


Q ss_pred             HHHHHHHHHHHHHHHhhhcCCCccccccccCCCCCCCCcccccCCCCcccccccccccccccCCCCCCCCCCcccccccc
Q 008137          352 GLSSCLVALAVVFFQAAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAHKGNEYLPGACLIDEKS  431 (576)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  431 (576)
                      +..++.+++.....                                                                  
T Consensus       298 ~~~~~~~~~~~~~~------------------------------------------------------------------  311 (417)
T PRK10489        298 GSFLAVGLFGLMPM------------------------------------------------------------------  311 (417)
T ss_pred             HHHHHHHHHHccch------------------------------------------------------------------
Confidence            66555544332211                                                                  


Q ss_pred             cccccccccccccccCCCCcchhHHHHHHHHHHHHhcCCcccccchhccccccccccccchhHHHHHHHHHHHHHHHHHH
Q 008137          432 TDTLCSDEHRTYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEIYPLRYRGVGGGIAAVSNWTSNLIVSLTFL  511 (576)
Q Consensus       432 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~g~~~~~~~~~  511 (576)
                                           .+...+..++++.+.+ ...+...++..|..|++.||+++|+.+....+|..++|.+.|
T Consensus       312 ---------------------~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G  369 (417)
T PRK10489        312 ---------------------WILAVLCLALFGYLSA-ISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLG  369 (417)
T ss_pred             ---------------------HHHHHHHHHHHHHHHH-HHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHH
Confidence                                 1222233333333222 112344567789999999999999999999999999999999


Q ss_pred             HHHHhhccchhhHHHHHHHHHHHHHHHhhccCCCCCCHHHHHH
Q 008137          512 TLTEALGSAGTFLLFAGFSLLGLVAIYLLVPETKGLAFEEVEK  554 (576)
Q Consensus       512 ~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  554 (576)
                      .+.+..|....+++.+++.++..++.+...+++|+++.+|.|+
T Consensus       370 ~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  412 (417)
T PRK10489        370 GLGAMMTPVASASASGFGLLIIGVLLLLVLGELRRFRQTPPEV  412 (417)
T ss_pred             HHHHHhchhhHHHHHHHHHHHHHHHHHHhcccccccccccccC
Confidence            9999999988888888877777777777788888877766543

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=100.00  E-value=1.5e-30  Score=280.12  Aligned_cols=408  Identities=15%  Similarity=0.114  Sum_probs=277.8

Q ss_pred             hHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHH
Q 008137           26 YIMKLALSAGIGGLLFGYDTGVISGALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADV  105 (576)
Q Consensus        26 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~  105 (576)
                      .++..+....+.....+.++..+....|.+.+ +|.+..+.   +++.+++.++..+++++.|+++||+|||+.+.++.+
T Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~g~s~~~~---g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~   99 (438)
T TIGR00712        24 LRWQVFLGIFFGYAAYYLVRKNFALAMPYLVE-QGFSKGEL---GFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLI   99 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccHHhhhHHHHH-cCCCHhHh---HHHHHHHHHHHHHhhhccchhhhccCCceehHHHHH
Confidence            35666677777778888888888888888776 58888888   999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhc----chHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 008137          106 LFFIGAIIMAIA----PQPWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFTK  181 (576)
Q Consensus       106 ~~~i~~~~~~~~----~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~  181 (576)
                      +.+++.+++++.    ++++.+.+.|++.|++.|..++....++.|++|+++|++++++++.+..+|..+++.+.+....
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~  179 (438)
T TIGR00712       100 LSAAVMLLMGFVPWATSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMA  179 (438)
T ss_pred             HHHHHHHHHhccccccchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence            999999887764    4677888999999999999999999999999999999999999999999999998887765444


Q ss_pred             CCchhHHHHHHhHHHHHHHHHH-HhhccCChhHHhhcCCHHHHHHHHHHhCCchhhhHHHHHHHHHHHhhhhhhcccchh
Q 008137          182 APGTWRWMLGVAGLPAVVQFGL-MMMLPESPRWLYRQNKVDEARAILEKIYPADQVEEEVNLLKQSVENEKAEEGLIGKD  260 (576)
Q Consensus       182 ~~~~Wr~~f~v~~~~~~~~~~~-~~~l~esp~~l~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (576)
                      ...+||+.|++.++++++..+. ++++||+|+....+...+. +.         +...+.       . ++.+.+...++
T Consensus       180 ~~~~w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~---------~~~~~~-------~-~~~~~~~~~~~  241 (438)
T TIGR00712       180 WFNDWHAALYFPAICAIIVALFAFAMMRDTPQSCGLPPIEEY-RN---------DYPDDY-------N-EKAEQELTAKE  241 (438)
T ss_pred             HhhhhHHHHHHHHHHHHHHHHHHHHhccCCHHhcCCCCchhc-cc---------cccccc-------c-cccccccchHH
Confidence            3235999999988887775544 5667887653211110000 00         000000       0 00000000000


Q ss_pred             hHHHhhhhcccchhhhhhHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcCCchhHHHHHHHHHhHHHHHHHHHHHHhhccc
Q 008137          261 MISRLKGAFGNKIVRRGLYAGVTVQVAQQFVGINTVMYYSPTIVQFAGFASKSTALALSLVTSGLNALGSIVSMAFVDKY  340 (576)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dk~  340 (576)
                        ...+..++++..+     .......+.+...+.+..|.|.|+++..+.+...++.......+.++++.+++|+++||+
T Consensus       242 --~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~  314 (438)
T TIGR00712       242 --IFMQYVLPNKLLW-----YIAIANVFVYLLRYGVLDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKV  314 (438)
T ss_pred             --HHHHHHccCchHH-----HHHHHHHHHHHHHHHHHHhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence              0011234444332     233333333444556777889999876555777777777888888999999999999999


Q ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccccccCCCCCCCCcccccCCCCcccccccccccccccCCCCCCC
Q 008137          341 GRRRLMIVSMFGLSSCLVALAVVFFQAAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAHKGNEY  420 (576)
Q Consensus       341 grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  420 (576)
                      ++++....+........+........                                                      
T Consensus       315 ~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------------------------  340 (438)
T TIGR00712       315 FKGNRGATGVFFMTLVTIAVIVYWMN------------------------------------------------------  340 (438)
T ss_pred             ccCcccHHHHHHHHHHHHHHHHHHhc------------------------------------------------------
Confidence            65432222332222221111111110                                                      


Q ss_pred             CCCcccccccccccccccccccccccCCCCcchhHHHHHHHHHHHHhcCCcccccchhccccccccccccchhHHHHHHH
Q 008137          421 LPGACLIDEKSTDTLCSDEHRTYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEIYPLRYRGVGGGIAAVSNW  500 (576)
Q Consensus       421 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~  500 (576)
                                                  +....+.....++..+... .+..........|.+|++.||++.|+.+..++
T Consensus       341 ----------------------------~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~  391 (438)
T TIGR00712       341 ----------------------------PAGNPLVDMICMIVIGFLI-YGPVMLIGLHALELAPKKAAGTAAGFTGLFGY  391 (438)
T ss_pred             ----------------------------CCCchHHHHHHHHHHHHHH-ccHHHHHHHHHHHhcChhheeeehhhhchHHH
Confidence                                        0000122222222222211 11111222356799999999999999999888


Q ss_pred             HHH-HHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHhhccCCC
Q 008137          501 TSN-LIVSLTFLTLTEALGSAGTFLLFAGFSLLGLVAIYLLVPETK  545 (576)
Q Consensus       501 ~g~-~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~  545 (576)
                      +++ +++|.+.|.+.|..|+..++++..++.+++.+..++++||.|
T Consensus       392 ~gg~~~gp~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  437 (438)
T TIGR00712       392 LGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEK  437 (438)
T ss_pred             hhhhhhcchhHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            875 689999999999999998999888888888888888888765

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=100.00  E-value=1.1e-30  Score=258.25  Aligned_cols=437  Identities=18%  Similarity=0.221  Sum_probs=322.9

Q ss_pred             HHHHHHhhchhhHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 008137           15 TECWNIVWTTPYIMKLALSAGIGGLLFGYDTGVISGALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRF   94 (576)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~   94 (576)
                      ++..+.....+.+|........+.+...+-....+-+.|...+.++.+..+.   .++......|..+++..+|.++|++
T Consensus        64 ~ea~~aigfgrfq~yl~~~ag~gwmad~m~~m~~s~i~~~l~~~w~~s~~q~---~llt~~v~~gmllga~~w~l~~d~~  140 (528)
T KOG0253|consen   64 DEAMNAIGFGRFQWYLFFVAGMGWMADAMEMMLLSLILPALDEVWGPSEGQA---PLLTLSVFLGMLVGAMVWGLSADTI  140 (528)
T ss_pred             hhhhhhcCcccchhhHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhchhhhhh---hHHHHHHHhhhhhhhhhhheehhhh
Confidence            3455666778889999999999988888887888888899999999888888   9999999999999999999999999


Q ss_pred             CchHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHH
Q 008137           95 GRKISLLGADVLFFIGAIIMAIAPQPWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYL  174 (576)
Q Consensus        95 Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~  174 (576)
                      |||+.+.++.+..++...+.+.++|+.+++++|.+.|+|.|+ .|...++-.|..|..+|..-+-.. ..+.+|.+....
T Consensus       141 grr~~f~~T~l~t~v~~~is~~spnf~~L~~f~~l~~~g~gg-~pv~~~~yle~lp~~~r~~~~V~~-~~waig~v~ea~  218 (528)
T KOG0253|consen  141 GRRKGFNLTFLVTGVFGVISGASPNFASLCVFRALWGFGVGG-LPVDSAIYLEFLPSSHRWLLTVMS-FFWAIGQVFEAL  218 (528)
T ss_pred             hcchhhhhhHHHHHHHHHhhcCCCCeehhhHHHHHHhccCCC-ccHhHHHHHHhccCcCCCcchhHH-HHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999 899999999999999998876666 899999999999


Q ss_pred             HHHHhcCCCchhHHHHHHhHHHHHHHHHHHhhccCChhHHhhcCCHHHHHHHHHHhCCchhhhHHH-----HHHHHHHHh
Q 008137          175 INLAFTKAPGTWRWMLGVAGLPAVVQFGLMMMLPESPRWLYRQNKVDEARAILEKIYPADQVEEEV-----NLLKQSVEN  249 (576)
Q Consensus       175 l~~~l~~~~~~Wr~~f~v~~~~~~~~~~~~~~l~esp~~l~~~~~~~~~~~~l~~i~~~~~~~~~~-----~~~~~~~~~  249 (576)
                      +.-......| |||.....+.+..+.....+++|||||+...++++.++.+.++++...|....+.     ....+..++
T Consensus       219 law~vm~~~g-wr~~l~~~~~pl~~~a~f~~w~~ESpRf~~~~G~~~kAletL~kiArmNg~qlplgvl~~s~~~~~e~e  297 (528)
T KOG0253|consen  219 LAWGVMSNFG-WRYLLFTSSTPLMFAARFLVWVYESPRFYLAKGDDYKALETLHKIARMNGKQLPLGVLESSAIDRQEQE  297 (528)
T ss_pred             HHHHHHHhhh-HHHHHHHHHhHHHHHHHHHhhcccCcchhhhcCChHHHHHHHHHHHHhcCCCCCcceeeeehhhhhhhh
Confidence            9888888776 9999999888888878888899999999999999999999888886654322111     000000000


Q ss_pred             hh---hhhcccchhhHHHhhhhcccchhhhhhHHHHHHHHHHHHHhhHHHHhhhHHHHHhhc------------------
Q 008137          250 EK---AEEGLIGKDMISRLKGAFGNKIVRRGLYAGVTVQVAQQFVGINTVMYYSPTIVQFAG------------------  308 (576)
Q Consensus       250 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------  308 (576)
                      +.   +.+....++...+...++.. .+|++.+....+++...+..+..+.. .....+...                  
T Consensus       298 ~~~~~~~~~~a~ke~rg~~~nLlsp-~lrkttlllw~iwfgnafsyyg~VLl-ttelfqsgd~c~~~~r~~p~e~e~~~~  375 (528)
T KOG0253|consen  298 ESDLDDSKSSAAKEVRGGTTNLLSP-KLRKTTLLLWRIWFGNAFSYYGSVLL-TTELFQSGDACPLYNRFLPTELETRAN  375 (528)
T ss_pred             hhchhhhhhccccccccchHhhcCh-HHHHHHHHHHHHHHhhHHHHHHHHHH-HHHHHhccCccccchhcchhHHHhhhc
Confidence            00   00011112222344444443 34555555455544433332222221 122222110                  


Q ss_pred             -CCchhHHHHHHHHHhHHHHHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccccccCCCCCC
Q 008137          309 -FASKSTALALSLVTSGLNALGSIVSMAFVDKYGRRRLMIVSMFGLSSCLVALAVVFFQAAIHAPTVSQIESSHFGGNNT  387 (576)
Q Consensus       309 -~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dk~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  387 (576)
                       -.+......=..+..+...+|.++.++++||+|||+.+...+++..++.+++......                     
T Consensus       376 c~~s~~~dYrdllitslaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~~r---------------------  434 (528)
T KOG0253|consen  376 CPLSVAKDYRDLLITSLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCKTR---------------------  434 (528)
T ss_pred             CCccchhHHHHHHHHHHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCc---------------------
Confidence             0111222333356677789999999999999999999998888877776655443221                     


Q ss_pred             CCcccccCCCCcccccccccccccccCCCCCCCCCCcccccccccccccccccccccccCCCCcchhHHHHHHHHHHHHh
Q 008137          388 CPAYITDGNAKSWNCMDCLKAKCGFCAHKGNEYLPGACLIDEKSTDTLCSDEHRTYFISGCPSSFGWLAVVFLGAYIITY  467 (576)
Q Consensus       388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~  467 (576)
                                                                                        ....+.++..-++.
T Consensus       435 ------------------------------------------------------------------n~~tvllf~arafi  448 (528)
T KOG0253|consen  435 ------------------------------------------------------------------NAYTVLLFTARAFI  448 (528)
T ss_pred             ------------------------------------------------------------------chhHHHHHHHHHHH
Confidence                                                                              11122222222222


Q ss_pred             cCCcccccchhccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHhhccCCCCC
Q 008137          468 SPGMGTAPWIVNSEIYPLRYRGVGGGIAAVSNWTSNLIVSLTFLTLTEALGSAGTFLLFAGFSLLGLVAIYLLVPETKGL  547 (576)
Q Consensus       468 ~~~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  547 (576)
                       .+.....+.|..|+||+..|+++.|.+...+++|+++.|.+.  +........+..+++++++++.+++.++.-|||+|
T Consensus       449 -sg~fqvaYvYtPEVyPTavRatgvGtcSsmaRIggI~~p~iA--~~~e~s~sl~i~vy~~~~ilagIavcffPiEtkGR  525 (528)
T KOG0253|consen  449 -SGAFQVAYVYTPEVYPTAVRATGVGTCSSMARIGGIFSPVIA--MRAELSTSLPIFVYGALFILAGIAVCFFPIETKGR  525 (528)
T ss_pred             -hchheEEEEecCcccchhhhhcchhhhhhHHhhhhhhhhHHH--HHhccceeehHHHHHHHHHHHHHHheeeeeccCCC
Confidence             234457789999999999999999999999999999999988  44444556678888999999988888888899998


Q ss_pred             CH
Q 008137          548 AF  549 (576)
Q Consensus       548 ~~  549 (576)
                      +.
T Consensus       526 ~l  527 (528)
T KOG0253|consen  526 SL  527 (528)
T ss_pred             CC
Confidence            64

>PRK10091 MFS transport protein AraJ; Provisional

Probab=100.00  E-value=4.6e-30  Score=271.39  Aligned_cols=371  Identities=15%  Similarity=0.097  Sum_probs=266.7

Q ss_pred             HHHHHHHHHHhhhhhhhhHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHH
Q 008137           30 LALSAGIGGLLFGYDTGVISGALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFI  109 (576)
Q Consensus        30 ~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i  109 (576)
                      .+..+.++.+..++......+.+|.+.+|+|.+..+.   |++.+++.+++.+++++.|++.||+|||+++.++.+++++
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~---g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~   80 (382)
T PRK10091          4 VILSLALGTFGLGMAEFGIMGVLTELAHDVGISIPAA---GHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVI   80 (382)
T ss_pred             hHHHHHHHHHHHHhhHHHHHhChHHHHHHcCCCHHHH---hHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHH
Confidence            3455667778888888899999999999999998888   9999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcchHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHH
Q 008137          110 GAIIMAIAPQPWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFTKAPGTWRWM  189 (576)
Q Consensus       110 ~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~Wr~~  189 (576)
                      +.++++++++++.+++.|+++|++.+...+....++.|++|+++|+++++....+..+|..+++++++.+.+..+ ||+.
T Consensus        81 ~~~l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g-wr~~  159 (382)
T PRK10091         81 GNAMFTLSSSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFS-WRYT  159 (382)
T ss_pred             HHHHHHHhCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhcc-HHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999999999888776 9999


Q ss_pred             HHHhHHHHHHHHHH-HhhccCChhHHhhcCCHHHHHHHHHHhCCchhhhHHHHHHHHHHHhhhhhhcccchhhHHHhhhh
Q 008137          190 LGVAGLPAVVQFGL-MMMLPESPRWLYRQNKVDEARAILEKIYPADQVEEEVNLLKQSVENEKAEEGLIGKDMISRLKGA  268 (576)
Q Consensus       190 f~v~~~~~~~~~~~-~~~l~esp~~l~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (576)
                      |++.+++.++..+. ++.+||.++.   + +.+. +                                      +. .+.
T Consensus       160 f~~~~~~~~~~~~~~~~~lp~~~~~---~-~~~~-~--------------------------------------~~-~~~  195 (382)
T PRK10091        160 FLLIAVFNIAVLASIYFWVPDIRDE---A-KGGL-R--------------------------------------EQ-FHF  195 (382)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCCcc---c-ccCH-H--------------------------------------HH-HHH
Confidence            99998877666554 4557775320   0 0000 0                                      00 011


Q ss_pred             cccchhhhhhHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcCCchhHHHHHHHHHhHHHHHHHHHHHHhhcccCChHHHHH
Q 008137          269 FGNKIVRRGLYAGVTVQVAQQFVGINTVMYYSPTIVQFAGFASKSTALALSLVTSGLNALGSIVSMAFVDKYGRRRLMIV  348 (576)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dk~grr~~~~~  348 (576)
                      ++++..+    . ..........+......+.+.++++..+.+..+.+.+.....++.+++.++.+++.||+++|+.+..
T Consensus       196 ~~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~~~~~  270 (382)
T PRK10091        196 LRSPAPW----L-IFAATMFGNAGVFAWFSYIKPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPLRIAAV  270 (382)
T ss_pred             hcChHHH----H-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheeccccCchhHHHH
Confidence            2222211    1 1111112222222333344555554434477778888888889999999999999999999999888


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhcCCCccccccccCCCCCCCCcccccCCCCcccccccccccccccCCCCCCCCCCccccc
Q 008137          349 SMFGLSSCLVALAVVFFQAAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAHKGNEYLPGACLID  428 (576)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  428 (576)
                      +..+.+++.+++......                                                              
T Consensus       271 ~~~~~~i~~~~~~~~~~~--------------------------------------------------------------  288 (382)
T PRK10091        271 TDFIIVLALLMLFFFGGM--------------------------------------------------------------  288 (382)
T ss_pred             HHHHHHHHHHHHHHHHhh--------------------------------------------------------------
Confidence            877776666544332110                                                              


Q ss_pred             ccccccccccccccccccCCCCcchhHHHHHHHHHHHHhcCCcccccchhccccccccccccchhHHHHHHHHHHHHHHH
Q 008137          429 EKSTDTLCSDEHRTYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEIYPLRYRGVGGGIAAVSNWTSNLIVSL  508 (576)
Q Consensus       429 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~g~~~~~~  508 (576)
                                              .+...+...+...++.....+.......+..|++.++.+  ..+....+|..++|.
T Consensus       289 ------------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~Gp~  342 (382)
T PRK10091        289 ------------------------KTASLIFAFICCAGLFALSAPLQILLLQNAKGGELLGAA--GGQIAFNLGSAIGAY  342 (382)
T ss_pred             ------------------------HHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCcchHHHHH--HHHHHHHHHHHHHHH
Confidence                                    122222222222222211122222333444455555443  346778999999999


Q ss_pred             HHHHHHHh-hccchhhHHHHHHHHHHHHHHHhhc
Q 008137          509 TFLTLTEA-LGSAGTFLLFAGFSLLGLVAIYLLV  541 (576)
Q Consensus       509 ~~~~l~~~-~g~~~~~~~~~~~~~i~~~~~~~~~  541 (576)
                      +.|.+.|. .++...+.+.++++++.......+.
T Consensus       343 ~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  376 (382)
T PRK10091        343 CGGMMLTLGLAYNYVALPAALLSFAAMSSLLLYG  376 (382)
T ss_pred             HhHHHHHcccCcchHHHHHHHHHHHHHHHHHHHh
Confidence            99999996 5777777777766666555444433

>TIGR00895 2A0115 benzoate transport

Probab=100.00  E-value=2.1e-30  Score=273.32  Aligned_cols=389  Identities=22%  Similarity=0.231  Sum_probs=275.0

Q ss_pred             HhhchhhHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHH
Q 008137           20 IVWTTPYIMKLALSAGIGGLLFGYDTGVISGALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKIS   99 (576)
Q Consensus        20 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~   99 (576)
                      ..+.++++|+.+....+..+..+++....+...|.+.+++|.+..+.   +++.+++.++..+++++.|+++||+|||+.
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~   84 (398)
T TIGR00895         8 KQPLSRYQWRAIILSFLIMLMDGYDLAAMGFAAPAISAEWGLDPVQL---GFLFSAGLIGMAFGALFFGPLADRIGRKRV   84 (398)
T ss_pred             hCCCcchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhccCCCHHHH---HHHHHHHHHHHHHHHHHhHHHHHHhhhHHH
Confidence            34445567777777778888888999999999999999999988887   999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 008137          100 LLGADVLFFIGAIIMAIAPQPWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAF  179 (576)
Q Consensus       100 ~~~~~~~~~i~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l  179 (576)
                      +.++.++.+++.++.+++++++.+++.|++.|++.+...+...+++.|++|+++|++++++.+.+..+|..+++.+++.+
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l  164 (398)
T TIGR00895        85 LLWSILLFSVFTLLCALATNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWL  164 (398)
T ss_pred             HHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCchhHHHHHHhHHHHHHHHH-HHhhccCChhHHhhcCCHHHHHHHHHHhCCchhhhHHHHHHHHHHHhhhhhhcccc
Q 008137          180 TKAPGTWRWMLGVAGLPAVVQFG-LMMMLPESPRWLYRQNKVDEARAILEKIYPADQVEEEVNLLKQSVENEKAEEGLIG  258 (576)
Q Consensus       180 ~~~~~~Wr~~f~v~~~~~~~~~~-~~~~l~esp~~l~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (576)
                      .+..+ ||+.|++.+++.++..+ .++++||++++..++ +.++.++..++.......+.         ..+..+++...
T Consensus       165 ~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~  233 (398)
T TIGR00895       165 IPVFG-WRSLFYVGGIAPLLLLLLLMRFLPESIDFLVSK-RPETVRRIVNAIAPQMQAEA---------QSALPEQKATQ  233 (398)
T ss_pred             hhccc-ceeehhhhhhHHHHHHHHHHHhCCCCChHHHhc-CHHHHHHHHHHHHHhccccc---------ccccccccccc
Confidence            88776 99999998755555444 466788887654433 22222222211110000000         00000000000


Q ss_pred             hhhHHHhhhhcccchhhhhhHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcCCchhHHHHHHHHHhHHHHHHHHHHHHhhc
Q 008137          259 KDMISRLKGAFGNKIVRRGLYAGVTVQVAQQFVGINTVMYYSPTIVQFAGFASKSTALALSLVTSGLNALGSIVSMAFVD  338 (576)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~d  338 (576)
                      .......+..++++..+. .+. .................+.|.+.++.+. +....+.......++.+++.++.++++|
T Consensus       234 ~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~  310 (398)
T TIGR00895       234 GTKRSVFKALFQGKTARI-TVL-LWLLYFMLLVGVYFLTNWLPKLMVELGF-SLSLAATGGALFNFGGVIGSIIFGWLAD  310 (398)
T ss_pred             chhhHHHHHHhcchhHHH-HHH-HHHHHHHHHHHHHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            000011222233322222 222 2222233444455667778877776666 5667777778888899999999999999


Q ss_pred             ccCChHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccccccCCCCCCCCcccccCCCCcccccccccccccccCCCCC
Q 008137          339 KYGRRRLMIVSMFGLSSCLVALAVVFFQAAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAHKGN  418 (576)
Q Consensus       339 k~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  418 (576)
                      |++||+..... .+..+...++.....                                                     
T Consensus       311 ~~~~~~~~~~~-~~~~~~~~~~~~~~~-----------------------------------------------------  336 (398)
T TIGR00895       311 RLGPRVTALLL-LLGAVFAVLVGSTLF-----------------------------------------------------  336 (398)
T ss_pred             hcchHHHHHHH-HHHHHHHHHHHHHhh-----------------------------------------------------
Confidence            99998544433 333333222222110                                                     


Q ss_pred             CCCCCcccccccccccccccccccccccCCCCcchhHHHHHHHHHHHHhcCCcccccchhccccccccccccchhHHHHH
Q 008137          419 EYLPGACLIDEKSTDTLCSDEHRTYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEIYPLRYRGVGGGIAAVS  498 (576)
Q Consensus       419 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~~~g~~~~~  498 (576)
                                                       ..+......++.+.+.+ +..+...++..|.+|++.||++.|+.+..
T Consensus       337 ---------------------------------~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~g~~~g~~~~~  382 (398)
T TIGR00895       337 ---------------------------------SPTLLLLLGAIAGFFVN-GGQSGLYALMALFYPTAIRATGVGWAIGI  382 (398)
T ss_pred             ---------------------------------CHHHHHHHHHHHHHHHH-HHHHHHHHHHhhcCCHHHHHHHHHHHHHH
Confidence                                             01222333334444333 23445667889999999999999999999


Q ss_pred             HHHHHHHHHHHHHHH
Q 008137          499 NWTSNLIVSLTFLTL  513 (576)
Q Consensus       499 ~~~g~~~~~~~~~~l  513 (576)
                      ..+|..++|.+.|.+
T Consensus       383 ~~~g~~~g~~~~G~l  397 (398)
T TIGR00895       383 GRLGAIIGPILAGYL  397 (398)
T ss_pred             HHHHHHHHHHhHHhc
Confidence            999999999998865

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=100.00  E-value=2e-29  Score=268.48  Aligned_cols=387  Identities=14%  Similarity=0.090  Sum_probs=278.0

Q ss_pred             hhhHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHH
Q 008137           24 TPYIMKLALSAGIGGLLFGYDTGVISGALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGA  103 (576)
Q Consensus        24 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~  103 (576)
                      ++..+.....+.+..++..++...+.+.+|.+.++++.+..+.   ++..+.+.+++.+++++.|+++||+|||+++.++
T Consensus         8 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~---~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~   84 (406)
T PRK15402          8 GRQALLFPLCLVLFEFATYIANDMIQPGMLAVVEDFNAGAEWV---PTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAG   84 (406)
T ss_pred             hHHHHHHHHHHHHHHHHHHhhhhhHhcchHHHHHHhCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHH
Confidence            4566777778888888889999999999999999999988887   9999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcchHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 008137          104 DVLFFIGAIIMAIAPQPWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFTKAP  183 (576)
Q Consensus       104 ~~~~~i~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~~  183 (576)
                      .++.+++.++++++++++.+++.|+++|++.+...+...+++.|++|+++|.++.++......+|..++|.+++.+.+..
T Consensus        85 ~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~  164 (406)
T PRK15402         85 VAFFILTCLAILLAQSIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHVL  164 (406)
T ss_pred             HHHHHHHHHHHHHHccHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence            99999999999999999999999999999999988999999999999999999999998888899999999999988876


Q ss_pred             chhHHHHHHhHHHHHHHHHH-HhhccCChhHHhhcCCHHHHHHHHHHhCCchhhhHHHHHHHHHHHhhhhhhcccchhhH
Q 008137          184 GTWRWMLGVAGLPAVVQFGL-MMMLPESPRWLYRQNKVDEARAILEKIYPADQVEEEVNLLKQSVENEKAEEGLIGKDMI  262 (576)
Q Consensus       184 ~~Wr~~f~v~~~~~~~~~~~-~~~l~esp~~l~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (576)
                      + ||+.|++.+++.++..+. ++..||+++...++.+                                      .++..
T Consensus       165 ~-w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------------~~~~~  205 (406)
T PRK15402        165 P-WRGMFVLFAALAALSFFGLWRAMPETAGRVGEKLS--------------------------------------LKELG  205 (406)
T ss_pred             C-ccHHHHHHHHHHHHHHHHHHHhCCCCCcccccccc--------------------------------------HHHHH
Confidence            6 999999988887766554 4456766431100000                                      00011


Q ss_pred             HHhhhhcccchhhhhhHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcCCchhHHHHHHHHHhHHHHHHHHHHHHhhcccCC
Q 008137          263 SRLKGAFGNKIVRRGLYAGVTVQVAQQFVGINTVMYYSPTIVQFAGFASKSTALALSLVTSGLNALGSIVSMAFVDKYGR  342 (576)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dk~gr  342 (576)
                      ++.+..++++..+..     ................+.|.++.+..+.+..+.+.......++.+++.++.+++.||+++
T Consensus       206 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~  280 (406)
T PRK15402        206 RDYKLVLKNRRFVAG-----ALALGLVSLPLLAWIALSPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRRPL  280 (406)
T ss_pred             HHHHHHHcCcHHHHH-----HHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCH
Confidence            333455555543322     111212222223344456777655434466666666666677788999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccccccCCCCCCCCcccccCCCCcccccccccccccccCCCCCCCCC
Q 008137          343 RRLMIVSMFGLSSCLVALAVVFFQAAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAHKGNEYLP  422 (576)
Q Consensus       343 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  422 (576)
                      |+.+..+.++..++.+++........                                                      
T Consensus       281 ~~~~~~~~~~~~~g~~~~~~~~~~~~------------------------------------------------------  306 (406)
T PRK15402        281 RSLIRMGLWPMVAGLLLAALATVISS------------------------------------------------------  306 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHccc------------------------------------------------------
Confidence            99988887777776666555421100                                                      


Q ss_pred             CcccccccccccccccccccccccCCCCcchhHHHHHHHHHHHHhcCCcccccchhccccccccccccchhHHHHHHHHH
Q 008137          423 GACLIDEKSTDTLCSDEHRTYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEIYPLRYRGVGGGIAAVSNWTS  502 (576)
Q Consensus       423 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~g  502 (576)
                                                  ...++.+....+.+.+.+... +........ .+++.||+..++.+....++
T Consensus       307 ----------------------------~~~~~~~~~~~~~g~g~~~~~-~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~  356 (406)
T PRK15402        307 ----------------------------HAYLWLTAGLSLYAFGIGLAN-AGLYRLTLF-SSDVSKGTVSAAMGMLSMLI  356 (406)
T ss_pred             ----------------------------ccHHHHHHHHHHHHHHHHHHh-hhHHHHHhh-hccccccHHHHHHHHHHHHH
Confidence                                        001222333333333333222 222233222 34588999999999999999


Q ss_pred             HHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHhhc
Q 008137          503 NLIVSLTFLTLTEALGSAGTFLLFAGFSLLGLVAIYLLV  541 (576)
Q Consensus       503 ~~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~  541 (576)
                      ..+++.+.+.+.+..+.....+...+..++..++...+.
T Consensus       357 ~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  395 (406)
T PRK15402        357 FTVGIELSKHAYLGGGNGLFNLFNLANGLLWLLLVRIFL  395 (406)
T ss_pred             HHHHHHHHHhcccCCchHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999998887765544444444444444333333

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=100.00  E-value=5.8e-30  Score=271.88  Aligned_cols=365  Identities=18%  Similarity=0.139  Sum_probs=264.8

Q ss_pred             HHHHHHHHHHHhhhhhhhhHHHHHHH-HHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHH
Q 008137           29 KLALSAGIGGLLFGYDTGVISGALLY-IKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLF  107 (576)
Q Consensus        29 ~~~~~~~l~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~  107 (576)
                      +.+..+.+..++..++..+..+.+|. +.++++.++.+.   |++.+++.+++.+++++.|+++||+|||+++.++.+++
T Consensus        15 ~~~~~l~~~~~~~~~~~~~~~~~l~~~i~~~~g~s~~~~---g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~   91 (399)
T PRK05122         15 LRIVSIVMFTFISYLTIGLPLAVLPGYVHDQLGFSAFLA---GLVISLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGC   91 (399)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHH---HHHHHHHHHHHHHhchhhHhHHhccCCcchHHHHHHHH
Confidence            44555667778888888999999997 578899988888   99999999999999999999999999999999999998


Q ss_pred             HHHHHHHHhc--------chHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 008137          108 FIGAIIMAIA--------PQPWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAF  179 (576)
Q Consensus       108 ~i~~~~~~~~--------~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l  179 (576)
                      ++++++++++        .+++.+++.|+++|++.+...+...+++.|++|+++|++++++.+.+..+|..+++.+++.+
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l  171 (399)
T PRK05122         92 ALSGLLYLLAGLLAAWPVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPLGVLL  171 (399)
T ss_pred             HHHHHHHHHhhhhhccchhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHHHHH
Confidence            8887766553        25778999999999999999999999999999999999999999999999999999999998


Q ss_pred             cCCCchhHHHHHHhHHHHHHHHHHHhhccCChhHHhhcCCHHHHHHHHHHhCCchhhhHHHHHHHHHHHhhhhhhcccch
Q 008137          180 TKAPGTWRWMLGVAGLPAVVQFGLMMMLPESPRWLYRQNKVDEARAILEKIYPADQVEEEVNLLKQSVENEKAEEGLIGK  259 (576)
Q Consensus       180 ~~~~~~Wr~~f~v~~~~~~~~~~~~~~l~esp~~l~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (576)
                      .+..+ ||+.+++.+++.++.++.....|++++   .+++.                                       
T Consensus       172 ~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~---------------------------------------  208 (399)
T PRK05122        172 YHWGG-LAGLGLLIMLLALLGLLLARPRPAVPP---VKGER---------------------------------------  208 (399)
T ss_pred             HHccc-HHHHHHHHHHHHHHHHHHHhcCCCCCC---CCccc---------------------------------------
Confidence            88776 999998877665544433333333221   00000                                       


Q ss_pred             hhHHHhhhhcccchhhhhhHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcCCchhHHHHHHHHHhHHHHHHHHHHHHhhcc
Q 008137          260 DMISRLKGAFGNKIVRRGLYAGVTVQVAQQFVGINTVMYYSPTIVQFAGFASKSTALALSLVTSGLNALGSIVSMAFVDK  339 (576)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dk  339 (576)
                         .+.++.+++  .+.....     .......+.....+.+.++++.+. +  ..+.......++.+++.++.+++.||
T Consensus       209 ---~~~~~~~~~--~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~g~l~~r  275 (399)
T PRK05122        209 ---LPFRRVLGR--VWPYGMG-----LALASIGFGTIATFITLYYAARGW-D--GAALALTLFGVAFVGARLLFGNLINR  275 (399)
T ss_pred             ---hhHHHHHHH--HHHHHHH-----HHHHHHHHHHHHHHHHHHHHHccc-c--cchHHHHHHHHHHHHHHHHHHHHHHH
Confidence               000000000  0110010     111122233444566666666554 2  23344456677788899999999999


Q ss_pred             cCChHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccccccCCCCCCCCcccccCCCCcccccccccccccccCCCCCC
Q 008137          340 YGRRRLMIVSMFGLSSCLVALAVVFFQAAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAHKGNE  419 (576)
Q Consensus       340 ~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  419 (576)
                      +++|+.+..+..+..++.+++.....                                                      
T Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------------------------  301 (399)
T PRK05122        276 LGGLRVAIVSLLVEILGLLLLWLAPS------------------------------------------------------  301 (399)
T ss_pred             hccHHHHHHHHHHHHHHHHHHHHhcc------------------------------------------------------
Confidence            99999888777776766655443211                                                      


Q ss_pred             CCCCcccccccccccccccccccccccCCCCcchhHHHHHHHHHHHHhcCCcccccchhccccccccccccchhHHHHHH
Q 008137          420 YLPGACLIDEKSTDTLCSDEHRTYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEIYPLRYRGVGGGIAAVSN  499 (576)
Q Consensus       420 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~  499 (576)
                                                       .+..++...+.+++++ ...+.......|..|++.||++.|+.+...
T Consensus       302 ---------------------------------~~~~~~~~~l~G~~~~-~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~  347 (399)
T PRK05122        302 ---------------------------------PWMALIGAALTGFGFS-LVFPALGVEAVKRVPPQNRGAALGAYSVFL  347 (399)
T ss_pred             ---------------------------------HHHHHHHHHHHHHhHH-HHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence                                             1222333333333333 223333345568889999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHhh
Q 008137          500 WTSNLIVSLTFLTLTEALGSAGTFLLFAGFSLLGLVAIYLL  540 (576)
Q Consensus       500 ~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~  540 (576)
                      .+|..+++.+.|.+.+..|++..+++.+++.+++.+..+++
T Consensus       348 ~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  388 (399)
T PRK05122        348 DLSLGITGPLAGLVASWFGYPSIFLAAALAALLGLALTWLL  388 (399)
T ss_pred             HHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999989998888888877766554

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.98  E-value=4.3e-29  Score=265.08  Aligned_cols=367  Identities=14%  Similarity=0.080  Sum_probs=261.9

Q ss_pred             HHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHH
Q 008137           27 IMKLALSAGIGGLLFGYDTGVISGALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVL  106 (576)
Q Consensus        27 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~  106 (576)
                      .|+.+..+.++.+..........+.+|.+.++++.++.+.   ++..+++.++..+++++.|++.||+|||+++..+.++
T Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~---g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~   94 (394)
T PRK10213         18 NWSAVFSVAFCVACLIIVEFLPVSLLTPMAQDLGISEGVA---GQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVL   94 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcCCCHHHH---HHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHH
Confidence            5555555555555555565677778999999999999888   9999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcchHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchh
Q 008137          107 FFIGAIIMAIAPQPWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFTKAPGTW  186 (576)
Q Consensus       107 ~~i~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~W  186 (576)
                      .+++.++++++++++.+++.|+++|++.+...+...+++.|++|+++|++++++...+.++|..+++++++.+.+..+ |
T Consensus        95 ~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~g-w  173 (394)
T PRK10213         95 LTLSCLLVSFANSFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIG-W  173 (394)
T ss_pred             HHHHHHHHHHHChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-H
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999998877 9


Q ss_pred             HHHHHHhHHHHHHHHHHH-hhccCChhHHhhcCCHHHHHHHHHHhCCchhhhHHHHHHHHHHHhhhhhhcccchhhHHHh
Q 008137          187 RWMLGVAGLPAVVQFGLM-MMLPESPRWLYRQNKVDEARAILEKIYPADQVEEEVNLLKQSVENEKAEEGLIGKDMISRL  265 (576)
Q Consensus       187 r~~f~v~~~~~~~~~~~~-~~l~esp~~l~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (576)
                      |+.|++.++++++..+.. ..+||+|+.   +++ +.                                        ++.
T Consensus       174 ~~~f~~~~~l~~~~~l~~~~~~p~~~~~---~~~-~~----------------------------------------~~~  209 (394)
T PRK10213        174 RNVFNAAAVMGVLCIFWIIKSLPSLPGE---PSH-QK----------------------------------------QNT  209 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCCcc---ccc-ch----------------------------------------hHH
Confidence            999999887776654443 346665321   000 00                                        111


Q ss_pred             hhhcccchhhhhhHHHHHHHHHHHHHhhHHH-HhhhHHHHHhhcCCchhHHHHHHHHHhHHHHHHHHHHHHhhcccCChH
Q 008137          266 KGAFGNKIVRRGLYAGVTVQVAQQFVGINTV-MYYSPTIVQFAGFASKSTALALSLVTSGLNALGSIVSMAFVDKYGRRR  344 (576)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dk~grr~  344 (576)
                      ++.++++..+...     ...+..+...... .+..|.+.++.+. +....+.......++.+++.++.+++.||.++ +
T Consensus       210 ~~~l~~~~~~~~~-----~~~~~~~~~~~~~~~~~~p~~~~~~g~-s~~~~g~~~~~~~~~~iig~~~~~~l~~r~~~-~  282 (394)
T PRK10213        210 FRLLQRPGVMAGM-----IAIFMSFAGQFAFFTYIRPVYMNLAGF-GVDGLTLVLLSFGIASFVGTSLSSFILKRSVK-L  282 (394)
T ss_pred             HHHhcCHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHhcCC-ChhHHHHHHHHHHHHHHHHHHHHHHHHhccch-h
Confidence            2334444333211     1112222222233 3335777766665 66667777777888899999999999999544 4


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccccccCCCCCCCCcccccCCCCcccccccccccccccCCCCCCCCCCc
Q 008137          345 LMIVSMFGLSSCLVALAVVFFQAAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAHKGNEYLPGA  424 (576)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  424 (576)
                      .+..+..+...+.+++.....                                                           
T Consensus       283 ~l~~~~~~~~~~~~~l~~~~~-----------------------------------------------------------  303 (394)
T PRK10213        283 ALAGAPLVLAVSALVLTLWGS-----------------------------------------------------------  303 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHhh-----------------------------------------------------------
Confidence            433333333333222222111                                                           


Q ss_pred             ccccccccccccccccccccccCCCCcchhHHHHHHHHHHHHhcCCcccccchhccccccccccccchhHHHHHHHHHHH
Q 008137          425 CLIDEKSTDTLCSDEHRTYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEIYPLRYRGVGGGIAAVSNWTSNL  504 (576)
Q Consensus       425 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~g~~  504 (576)
                                                 ..+.......+.+.++... .+...++..+..| +.++...++......+|..
T Consensus       304 ---------------------------~~~~~~~~~~l~G~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~lg~~  354 (394)
T PRK10213        304 ---------------------------DKIVATGVAIIWGLTFALV-PVGWSTWITRSLA-DQAEKAGSIQVAVIQLANT  354 (394)
T ss_pred             ---------------------------hHHHHHHHHHHHHHHHHhh-hHHHHHHHHHHCc-ccHHHHHHHHHHHHHHHHH
Confidence                                       0133333444444444322 2333345566666 4466777878888899999


Q ss_pred             HHHHHHHHHHHhhccchhhHHHHHHHHHHHHH
Q 008137          505 IVSLTFLTLTEALGSAGTFLLFAGFSLLGLVA  536 (576)
Q Consensus       505 ~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~~  536 (576)
                      +++.+.|.+.|..|++..+...+.+.++..++
T Consensus       355 ~G~~l~G~l~~~~g~~~~~~~~~~~~~~~~~~  386 (394)
T PRK10213        355 CGAAIGGYALDNIGLTSPLMLSGTLMLLTALL  386 (394)
T ss_pred             HHHHHHHHHHhccChhhHHHHHHHHHHHHHHH
Confidence            99999999999999887777766655554433

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.98  E-value=6.2e-30  Score=278.13  Aligned_cols=385  Identities=15%  Similarity=0.048  Sum_probs=254.4

Q ss_pred             hhHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHH
Q 008137           25 PYIMKLALSAGIGGLLFGYDTGVISGALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGAD  104 (576)
Q Consensus        25 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~  104 (576)
                      +.+++.+....+..++..++....++..|.+.+++|.+..+.   +++.+++.+++.+++++.|+++||+|||+++..+.
T Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gls~~~~---g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~  108 (476)
T PLN00028         32 RPHMRAFHLSWISFFTCFVSTFAAAPLLPIIRDNLNLTKSDI---GNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLL  108 (476)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHH
Confidence            344556666666677777788888999999999999998888   99999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcchHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhc----
Q 008137          105 VLFFIGAIIMAIAPQPWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFT----  180 (576)
Q Consensus       105 ~~~~i~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~----  180 (576)
                      ++++++.++++++++++.++++|+++|++.+... ....+++|++|+++|++++++.+....+|..+++.+.+.+.    
T Consensus       109 ~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~~~~~-~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~  187 (476)
T PLN00028        109 MLTAPAVFCMSLVSSATGFIAVRFFIGFSLATFV-SCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIK  187 (476)
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhhH-HHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999988654 45678999999999999999998777777766655554332    


Q ss_pred             CC----CchhHHHHHHhHHHHHHHHHHHhhccC-ChhHHhhcCCHHHHHHHHHHhCCchhhhHHHHHHHHHHHhhhhhhc
Q 008137          181 KA----PGTWRWMLGVAGLPAVVQFGLMMMLPE-SPRWLYRQNKVDEARAILEKIYPADQVEEEVNLLKQSVENEKAEEG  255 (576)
Q Consensus       181 ~~----~~~Wr~~f~v~~~~~~~~~~~~~~l~e-sp~~l~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~  255 (576)
                      ..    ..+||+.|++.++++++..+..+++++ .|+.     +.++.++                        +.+.+ 
T Consensus       188 ~~~~~~~~gWr~~f~i~g~l~l~~~l~~~~~~~~~p~~-----~~~~~~~------------------------~~~~~-  237 (476)
T PLN00028        188 DAGAPSFTAWRIAFFVPGLLHIIMGILVLTLGQDLPDG-----NYRELKK------------------------SGTMP-  237 (476)
T ss_pred             hcCCcchhhhHHHHHHHHHHHHHHHHHHHHHcCcCCCC-----chhhHHh------------------------cCccc-
Confidence            11    125999999999988877666555543 3320     0000000                        00000 


Q ss_pred             ccchhhHHHhhhhcccchhhhhhHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcCCchhHHHHHHHHHhHHHHHHHHHHHH
Q 008137          256 LIGKDMISRLKGAFGNKIVRRGLYAGVTVQVAQQFVGINTVMYYSPTIVQFAGFASKSTALALSLVTSGLNALGSIVSMA  335 (576)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~  335 (576)
                        .......+++.++++..+.     +....+.++.....+..+.|.++.+..+.+...++.+.....++++++++++|+
T Consensus       238 --~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~  310 (476)
T PLN00028        238 --KDSFSKVLRYGVTNYRTWI-----LALTYGYSFGVELTMDNIIAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGY  310 (476)
T ss_pred             --cccHHHHHHHHHcCchhHH-----HHHHHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHH
Confidence              0000122333344433221     222222233333445667788776654447778888888889999999999999


Q ss_pred             hhcccCChH-------HHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccccccCCCCCCCCcccccCCCCcccccccccc
Q 008137          336 FVDKYGRRR-------LMIVSMFGLSSCLVALAVVFFQAAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKA  408 (576)
Q Consensus       336 l~dk~grr~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  408 (576)
                      ++||++||+       ......++..++.+++....                                            
T Consensus       311 lsDr~~~r~~~~~r~~~~~~~~~l~~i~~~~~~~~~--------------------------------------------  346 (476)
T PLN00028        311 LSDVAARRFGMRGRLWALWIVQTLGGVFCIWLGRAN--------------------------------------------  346 (476)
T ss_pred             HHHHHHHhcCcchhHHHHHHHHHHHHHHHHHhcccc--------------------------------------------
Confidence            999998652       11111121111111111110                                            


Q ss_pred             cccccCCCCCCCCCCcccccccccccccccccccccccCCCCcchhHHHHHHHHHHHHhcCCcccccchhcccccccccc
Q 008137          409 KCGFCAHKGNEYLPGACLIDEKSTDTLCSDEHRTYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEIYPLRYR  488 (576)
Q Consensus       409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r  488 (576)
                                                                 ..+..++.++++..+...+ .+..+.+..++. ++.+
T Consensus       347 -------------------------------------------~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~-~~~~  381 (476)
T PLN00028        347 -------------------------------------------SLGAAIVVMILFSIFVQAA-CGATFGIVPFVS-RRSL  381 (476)
T ss_pred             -------------------------------------------hHHHHHHHHHHHHHHHHHh-hhhhcccCcccC-hhhc
Confidence                                                       0122222233333322211 123345556665 4789


Q ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHhh
Q 008137          489 GVGGGIAAVSNWTSNLIVSLTFLTLTEALGSAGTFLLFAGFSLLGLVAIYLL  540 (576)
Q Consensus       489 g~~~g~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~  540 (576)
                      |+..|+.+..+.+|+++++.+.+ ..+..++...|++.+++.+++.++.++.
T Consensus       382 g~~~g~~~~~g~lg~~i~~~l~~-~~~~~~y~~~f~~~~~~~~i~~~~~~~~  432 (476)
T PLN00028        382 GVISGLTGAGGNVGAVLTQLLFF-TGSSYSTETGISLMGVMIIACTLPVAFI  432 (476)
T ss_pred             hhhhhhhhccccHHHHHHHHHHH-hcCCccHhhHHHHHHHHHHHHHHHHHhe
Confidence            99999998888888888777654 2223457788888888888877666443

>PRK10504 putative transporter; Provisional

Probab=99.98  E-value=2.7e-29  Score=272.78  Aligned_cols=388  Identities=14%  Similarity=0.165  Sum_probs=273.7

Q ss_pred             HHHHHHHHHHhhhhhhhhHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHH
Q 008137           30 LALSAGIGGLLFGYDTGVISGALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFI  109 (576)
Q Consensus        30 ~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i  109 (576)
                      .+..++++.++..++...+++.+|.+.+++|.+..+.   +++.+.+.++..++.+++|+++||+|||++++.+.+++++
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~---~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~   87 (471)
T PRK10504         11 QLWIVAFGFFMQSLDTTIVNTALPSMAQSLGESPLHM---HMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTL   87 (471)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHH
Confidence            3455667788899999999999999999999998888   9999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcchHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHH
Q 008137          110 GAIIMAIAPQPWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFTKAPGTWRWM  189 (576)
Q Consensus       110 ~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~Wr~~  189 (576)
                      +.++++++++++.++++|+++|++.+...+....++.|++|+++|+++.++.+...++|..+++.+++.+.+..+ ||+.
T Consensus        88 ~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~g-w~~~  166 (471)
T PRK10504         88 GSLFCALSGTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYAS-WHWI  166 (471)
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcc-HHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999999999988776 9999


Q ss_pred             HHHhHHHHHHHHHHH-hhccCChhHHhhcCCHHHHHHHHHH---------hCCchh--hhH-HHHH--------HHHHHH
Q 008137          190 LGVAGLPAVVQFGLM-MMLPESPRWLYRQNKVDEARAILEK---------IYPADQ--VEE-EVNL--------LKQSVE  248 (576)
Q Consensus       190 f~v~~~~~~~~~~~~-~~l~esp~~l~~~~~~~~~~~~l~~---------i~~~~~--~~~-~~~~--------~~~~~~  248 (576)
                      |++......+..+.. ...|+.+.   .+.+.+........         ..+.+.  ... ....        ......
T Consensus       167 f~~~~~~~~l~~~~~~~~~~~~~~---~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (471)
T PRK10504        167 FLINIPVGIIGAIATLMLMPNYTM---QTRRFDLSGFLLLAVGMATLTLALDGSKGLGLSPLAIAGLVAVGVVALLLYLL  243 (471)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCccc---cCCCCChHHHHHHHHHHHHHHHHHhcCCcCCcchHHHHHHHHHHHHHHHHHHH
Confidence            999887766665553 34454432   11122221111000         000000  000 0000        000000


Q ss_pred             hhhhhhcccchhhHHHhhhhcccchhhhhhHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcCCchhHHHHHHHHHhHHHHH
Q 008137          249 NEKAEEGLIGKDMISRLKGAFGNKIVRRGLYAGVTVQVAQQFVGINTVMYYSPTIVQFAGFASKSTALALSLVTSGLNAL  328 (576)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  328 (576)
                      +++...    ++ ..+ .++++++.++.     .....+..........++.|+|++...+.+....++......++.++
T Consensus       244 ~~~~~~----~~-~~~-~~l~~~~~~~~-----~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~  312 (471)
T PRK10504        244 HARNNN----RA-LFS-LKLFRTRTFSL-----GLAGSFAGRIGSGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMG  312 (471)
T ss_pred             HHhcCC----CC-ccC-HHHhcccchHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence            000000    00 011 12445544332     33333333344556667788888865555777888887887888888


Q ss_pred             HHHHHHHhhcccCChHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccccccCCCCCCCCcccccCCCCcccccccccc
Q 008137          329 GSIVSMAFVDKYGRRRLMIVSMFGLSSCLVALAVVFFQAAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKA  408 (576)
Q Consensus       329 g~~~~g~l~dk~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  408 (576)
                      +.++.+++.||+|||+++..+..+..+...++.....                                           
T Consensus       313 ~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------------------  349 (471)
T PRK10504        313 MKRIVVQVVNRFGYRRVLVATTLGLALVSLLFMLVAL-------------------------------------------  349 (471)
T ss_pred             HHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHhccc-------------------------------------------
Confidence            8899999999999999998887776666554443210                                           


Q ss_pred             cccccCCCCCCCCCCcccccccccccccccccccccccCCCCcchhHHHHHHHHHHHHhcCCcccccchhcccccccccc
Q 008137          409 KCGFCAHKGNEYLPGACLIDEKSTDTLCSDEHRTYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEIYPLRYR  488 (576)
Q Consensus       409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r  488 (576)
                                                               .+..+...+...+.+.+.+... +....+..+..|++.+
T Consensus       350 -----------------------------------------~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~  387 (471)
T PRK10504        350 -----------------------------------------LGWYYLLPFVLFLQGMVNSTRF-SSMNTLTLKDLPDNLA  387 (471)
T ss_pred             -----------------------------------------cccHHHHHHHHHHHHHHHHHHH-HHHHHHHHHcCCHHhc
Confidence                                                     0001222222222223333222 2344666788899999


Q ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 008137          489 GVGGGIAAVSNWTSNLIVSLTFLTLTEALGSA  520 (576)
Q Consensus       489 g~~~g~~~~~~~~g~~~~~~~~~~l~~~~g~~  520 (576)
                      |.++|+.++...+|..+++.+.+.+.+..|+.
T Consensus       388 g~~~~~~~~~~~~g~~ig~~i~g~ll~~~g~~  419 (471)
T PRK10504        388 SSGNSLLSMIMQLSMSIGVTIAGLLLGLFGQQ  419 (471)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            99999999999999999999999998877653

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.97  E-value=1.8e-29  Score=274.75  Aligned_cols=386  Identities=15%  Similarity=0.135  Sum_probs=277.7

Q ss_pred             HHHHHHHHHHhhhhhhhhHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHH
Q 008137           30 LALSAGIGGLLFGYDTGVISGALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFI  109 (576)
Q Consensus        30 ~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i  109 (576)
                      .+..++++.++..+|....++.+|.+.+++|.+..+.   +++.+.+.++..++.++.|+++||+|||++++++.+++.+
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~---~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~   79 (485)
T TIGR00711         3 LTIVLMLGTFMAVLDSTIVNVAIPTIAGDLGSSLSQV---QWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTL   79 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhh---hHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHH
Confidence            4566778889999999999999999999999988888   9999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcchHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHH
Q 008137          110 GAIIMAIAPQPWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFTKAPGTWRWM  189 (576)
Q Consensus       110 ~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~Wr~~  189 (576)
                      ++++++++++++.++++|+++|++.+...+...+++.|++|+++|++++++++....+|..+++.+++.+.+..+ ||+.
T Consensus        80 ~~~~~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~-w~~~  158 (485)
T TIGR00711        80 GSLLCGVAPNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYH-WRWI  158 (485)
T ss_pred             HHHHHhCcCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCcC-ceeh
Confidence            999999999999999999999999999999999999999999999999999999999999999999999998877 9999


Q ss_pred             HHHhHHHHHHHHHH-HhhccCChhHHhhcCCHHHHHHHHH-----------HhCCchh---hhHHHHHHH--------HH
Q 008137          190 LGVAGLPAVVQFGL-MMMLPESPRWLYRQNKVDEARAILE-----------KIYPADQ---VEEEVNLLK--------QS  246 (576)
Q Consensus       190 f~v~~~~~~~~~~~-~~~l~esp~~l~~~~~~~~~~~~l~-----------~i~~~~~---~~~~~~~~~--------~~  246 (576)
                      |++.++++++..+. ++++||+++.  .+++.|.......           ......+   .........        ..
T Consensus       159 f~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~d~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (485)
T TIGR00711       159 FLINVPIGIIVVVVAFFILPRDKPA--ASENFDFLGLLLLSVGLGSLLYGLSEGPERGWFDSNEILILSITGLVAIIAFV  236 (485)
T ss_pred             hhhhhHHHHHHHHHHHHHcCCcccc--ccCCCcHHHHHHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHHHH
Confidence            99988887766555 4456664431  1112222111000           0000000   000000000        00


Q ss_pred             HHhhhhhhcccchhhHHHhhhhcccchhhhhhHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcCCchhHHHHHHHHHhHHH
Q 008137          247 VENEKAEEGLIGKDMISRLKGAFGNKIVRRGLYAGVTVQVAQQFVGINTVMYYSPTIVQFAGFASKSTALALSLVTSGLN  326 (576)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  326 (576)
                      ..+...+++.      . ..+.++++.++.     .....+..........++.|.++++..+.+..+++.......++.
T Consensus       237 ~~~~~~~~~~------~-~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~  304 (485)
T TIGR00711       237 VWELTDDNPL------V-DLRLFKYRNFTI-----GCVYMSLLGLGLYGSFYLLPLYLQQVLGYTALQAGLHILPVGLAP  304 (485)
T ss_pred             HHHHcCCCCc------c-CHHHHcCCChHH-----HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence            0000000000      0 112344433322     233333334445566678899998876668888888888889999


Q ss_pred             HHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccccccCCCCCCCCcccccCCCCcccccccc
Q 008137          327 ALGSIVSMAFVDKYGRRRLMIVSMFGLSSCLVALAVVFFQAAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCL  406 (576)
Q Consensus       327 ~ig~~~~g~l~dk~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  406 (576)
                      +++.++.|++.||++||+.+..+..+..++..++.+...                                         
T Consensus       305 ~~~~~~~g~l~~r~~~~~~~~~g~~~~~~~~~~~~~~~~-----------------------------------------  343 (485)
T TIGR00711       305 MLSSPIAGRMGDKIDPRKLVTIGLILYAVGFYWRAFTFT-----------------------------------------  343 (485)
T ss_pred             HHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHhccCC-----------------------------------------
Confidence            999999999999999999988887777766665442211                                         


Q ss_pred             cccccccCCCCCCCCCCcccccccccccccccccccccccCCCCcchhHHHHHHHHHHHHhcCCcccccchhcccccccc
Q 008137          407 KAKCGFCAHKGNEYLPGACLIDEKSTDTLCSDEHRTYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEIYPLR  486 (576)
Q Consensus       407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~  486 (576)
                                                                |....+..+....+.+++.+....+.. ....+..|++
T Consensus       344 ------------------------------------------~~~~~~~~~~~~~l~g~g~~~~~~~~~-~~~~~~~~~~  380 (485)
T TIGR00711       344 ------------------------------------------PDTPFLAIALPQFIRGFGMGCFFMPLT-TIALSGLPPH  380 (485)
T ss_pred             ------------------------------------------CCCCHHHHHHHHHHHHHHHHHHHHHHH-HHHHhcCCHH
Confidence                                                      000112223333333333332222333 4445678999


Q ss_pred             ccccchhHHHHHHHHHHHHHHHHHHHHHHhh
Q 008137          487 YRGVGGGIAAVSNWTSNLIVSLTFLTLTEAL  517 (576)
Q Consensus       487 ~rg~~~g~~~~~~~~g~~~~~~~~~~l~~~~  517 (576)
                      .+|++.|+.+....+|+.+++.+.+.+.++.
T Consensus       381 ~~g~~~~~~~~~~~~g~~ig~~i~g~~~~~~  411 (485)
T TIGR00711       381 KIARGSSLSNFTRQLGGSIGTALITTILTNR  411 (485)
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999988753

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.97  E-value=1.6e-30  Score=282.11  Aligned_cols=402  Identities=17%  Similarity=0.110  Sum_probs=281.9

Q ss_pred             chhhHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHH----------------------hhccchhhhHHHHHHHHHHHHHH
Q 008137           23 TTPYIMKLALSAGIGGLLFGYDTGVISGALLYIKE----------------------DFRDVEKKTWLQELIVSMAVAGA   80 (576)
Q Consensus        23 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~----------------------~~~~~~~~~~~~g~i~s~~~~~~   80 (576)
                      ..+.||.++.++.++..+.+.|+..++...+.+.+                      |++.+..+.   |++.+.+.+++
T Consensus        13 ~~~~r~~i~~~~~~~~~~~y~dr~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~---g~~~s~~~~~~   89 (465)
T TIGR00894        13 FCSFRLFLSFLLHICNVIIIAQRICLSLTMVAMVNKENSTDLACLSAENELDNIKNPNFKWSGALQ---GLILSSHFYGQ   89 (465)
T ss_pred             ccCcHHHHHHHHHHHHHHHHHHHhhheEEEEEcccCCCCCCccccccccccccccCCCCCCCHHHh---hHHHHHHHHHH
Confidence            46678889999999999999999999999988877                      677777777   99999999999


Q ss_pred             HHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHH
Q 008137           81 IFGAGFGGWINDRFGRKISLLGADVLFFIGAIIMAIA--PQPWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALV  158 (576)
Q Consensus        81 ~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~~--~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~  158 (576)
                      .+++++.|+++||+|||+++.++.++++++++++.++  .+++.+++.|+++|++.+...+....++.||+|+++|++++
T Consensus        90 ~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~  169 (465)
T TIGR00894        90 IIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKERSRLL  169 (465)
T ss_pred             HHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccchhhHHHHHHhcCCHHHHHHHH
Confidence            9999999999999999999999999999999887554  56888999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHhHHHHHHHHHHHhh-ccCChhHHhhcCCHHHHHHHHHHhCCchhhh
Q 008137          159 SANGFLITGGQFLAYLINLAFTKAPGTWRWMLGVAGLPAVVQFGLMMM-LPESPRWLYRQNKVDEARAILEKIYPADQVE  237 (576)
Q Consensus       159 ~~~~~~~~~G~~l~~~l~~~l~~~~~~Wr~~f~v~~~~~~~~~~~~~~-l~esp~~l~~~~~~~~~~~~l~~i~~~~~~~  237 (576)
                      ++...+..+|.++++++.+.+.+...+||+.|++.++++++..+.++. .+|+|+..... +.++ ++            
T Consensus       170 ~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~p~~~~~~-~~~~-~~------------  235 (465)
T TIGR00894       170 GMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVFPADDPSIHPCI-SKFE-KK------------  235 (465)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHHHhcCCcccCCCC-CHHH-HH------------
Confidence            999999999999999999999877423999999999988877766544 56666421111 1111 00            


Q ss_pred             HHHHHHHHHHHhhhhhhcccchhhHHHhhhhcccchhhhhhHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcCCchhHHHH
Q 008137          238 EEVNLLKQSVENEKAEEGLIGKDMISRLKGAFGNKIVRRGLYAGVTVQVAQQFVGINTVMYYSPTIVQFAGFASKSTALA  317 (576)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (576)
                          ...+..+.++...  ..   ..++++.++++.     ++......+......+.+..|.|.|+++..+.+....++
T Consensus       236 ----~i~~~~~~~~~~~--~~---~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~  301 (465)
T TIGR00894       236 ----YINSSLQGQKGST--RQ---SLPIKAIPKSLP-----VWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGL  301 (465)
T ss_pred             ----HHHhhcccccCCC--CC---CCCHHHHhcCHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHhHH
Confidence                0000000000000  00   022444454443     333444445555566777889999988765557788888


Q ss_pred             HHHHHhHHHHHHHHHHHHhhcccCChHHHH---HHHHHHHHHH---HHHHHHHHHhhhcCCCccccccccCCCCCCCCcc
Q 008137          318 LSLVTSGLNALGSIVSMAFVDKYGRRRLMI---VSMFGLSSCL---VALAVVFFQAAIHAPTVSQIESSHFGGNNTCPAY  391 (576)
Q Consensus       318 ~~~~~~~~~~ig~~~~g~l~dk~grr~~~~---~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  391 (576)
                      ......++.+++.+++|+++||+++|+...   ...+...++.   .+..+......                       
T Consensus       302 ~~~~~~~~~~i~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------  358 (465)
T TIGR00894       302 LSSLPYLFAWLCSIFAGYLADFLKSSKTLSLTAARKIFNGIGGLGPGIFAYALPYLS-----------------------  358 (465)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHcC-----------------------
Confidence            888889999999999999999876442110   0111111111   11111111000                       


Q ss_pred             cccCCCCcccccccccccccccCCCCCCCCCCcccccccccccccccccccccccCCCCcchhHHHHHHHHHHHHhcCCc
Q 008137          392 ITDGNAKSWNCMDCLKAKCGFCAHKGNEYLPGACLIDEKSTDTLCSDEHRTYFISGCPSSFGWLAVVFLGAYIITYSPGM  471 (576)
Q Consensus       392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~  471 (576)
                                                                                 ...+..++.+.+...+.. +.
T Consensus       359 -----------------------------------------------------------~~~~~~~~~~~l~~~~~~-~~  378 (465)
T TIGR00894       359 -----------------------------------------------------------AAFYLTIIILTLANAVSS-GP  378 (465)
T ss_pred             -----------------------------------------------------------CchHHHHHHHHHHHHHhh-hh
Confidence                                                                       001222333333333222 22


Q ss_pred             ccccchhccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHhh---ccchhhHHHHHHHHHHHHHHHh
Q 008137          472 GTAPWIVNSEIYPLRYRGVGGGIAAVSNWTSNLIVSLTFLTLTEAL---GSAGTFLLFAGFSLLGLVAIYL  539 (576)
Q Consensus       472 ~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~g~~~~~~~~~~l~~~~---g~~~~~~~~~~~~~i~~~~~~~  539 (576)
                      .+..+....|..| +.+|.+.|+.++.+.++++++|.+.|.+.+..   ++...|.+.+++.+++.++..+
T Consensus       379 ~~~~~~~~~~~~~-~~~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~  448 (465)
T TIGR00894       379 LAGVLINSLDLAP-RFLGFIKGITGLPGFIGGLIASTLAGNILSQDSKNVWLIVFLIMAFVNILCVIFYLI  448 (465)
T ss_pred             hhhhhhchhhcCh-hHHHHHHHHHHHHHHHHHHHHHHhhheeeCCCCchHHHHHHHHHHHHHHHHHHHeee
Confidence            2233344556665 48999999999999999999999999887653   3666778887777777665543

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=99.97  E-value=6.4e-30  Score=281.39  Aligned_cols=396  Identities=22%  Similarity=0.256  Sum_probs=283.0

Q ss_pred             hccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhhhhhhh
Q 008137           59 FRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFIGAIIMAIAPQPWVIILGRIFVGLGVGMAS  138 (576)
Q Consensus        59 ~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~R~l~G~~~g~~~  138 (576)
                      ++.-+...+...+..+++++|..+|++++|+++||+|||++++.++++..++.++.++++|++.+++.|++.|++.++..
T Consensus       110 ~~~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~~~~~~~~~Rfl~G~~~~~~~  189 (521)
T KOG0255|consen  110 WNLVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAPNYWMFLIFRFLSGFFGSGPL  189 (521)
T ss_pred             hceeeCcHhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhccchh
Confidence            55555555555999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHhHHHHHHHHHHHhhccCChhHHhhcC
Q 008137          139 MTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFTKAPGTWRWMLGVAGLPAVVQFGLMMMLPESPRWLYRQN  218 (576)
Q Consensus       139 ~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~Wr~~f~v~~~~~~~~~~~~~~l~esp~~l~~~~  218 (576)
                      .....+++|++++++|+.+..+ ......|..+++++++++..   +|||.+++..+++++.++.+++.||+|||+..++
T Consensus       190 ~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~---~Wr~~~~~~~~~~~~~~~~~~l~~Es~rwl~~~g  265 (521)
T KOG0255|consen  190 TVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR---DWRWLFWIISIPSGLFLLLWFLPPESPRWLLSKG  265 (521)
T ss_pred             HHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh---hHHHHHHHHHHHHHHHHHHHHccCcChHHHHHcC
Confidence            9999999999999999999999 66666777777888887776   5999999999999988888777789999999999


Q ss_pred             CHHHHHHHHHHhCCch---hhhHHHHHHHHHHHhhhhhhcccchhhHHHhhhhcccchhhhhhHHHHHHHHHHHHHhhHH
Q 008137          219 KVDEARAILEKIYPAD---QVEEEVNLLKQSVENEKAEEGLIGKDMISRLKGAFGNKIVRRGLYAGVTVQVAQQFVGINT  295 (576)
Q Consensus       219 ~~~~~~~~l~~i~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (576)
                      +.+++.+.++++...+   ....+........+......  .  +......++++.+..++..+.....++.     +..
T Consensus       266 ~~~~a~~~l~~~a~~n~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~l~~~~~l~~~~~~~~~~~~~-----~~~  336 (521)
T KOG0255|consen  266 RIDEAIKILKKIAKLNGRKLSVKELLRLELLLRPLKLLF--T--EPKISFLDLFRTPRLRYRTLYLLFIWFV-----FSL  336 (521)
T ss_pred             chHHHHHHHHHHHhhcCCCCCcHHHHHHHHHhhHhhhhc--c--CCCCchhhhhcCHHHHHHHHHHHHHHHH-----HhH
Confidence            9999999888875433   11111111110101000000  0  0002356677776655555554444422     222


Q ss_pred             HHhhhHHHHHhhcCCchhHHHHHHHHHhHHHHHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcc
Q 008137          296 VMYYSPTIVQFAGFASKSTALALSLVTSGLNALGSIVSMAFVDKYGRRRLMIVSMFGLSSCLVALAVVFFQAAIHAPTVS  375 (576)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dk~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  375 (576)
                      ..+-.+......+. +.   .......+.....+....+...|+.|||.....+.++..++++...+......       
T Consensus       337 ~y~gl~~~~~~lg~-~~---~~~~~~~~~~~~p~~~~~~~~~~~~gR~~~~~~~~~~~~~~~~~~~~~~~~~~-------  405 (521)
T KOG0255|consen  337 VYYGLSLNVSGLGG-NI---YLNFTLSGLVELPAYFRNGLLLPEFGRRPPLFLSLFLAGIGLLLFGWLPDDLG-------  405 (521)
T ss_pred             HHHhhhhhhhhcCc-hH---HHHHHHHHHHHhhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhccch-------
Confidence            22222333333333 22   22222333356777778889999999999999999999999888877643210       


Q ss_pred             ccccccCCCCCCCCcccccCCCCcccccccccccccccCCCCCCCCCCcccccccccccccccccccccccCCCCcchhH
Q 008137          376 QIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAHKGNEYLPGACLIDEKSTDTLCSDEHRTYFISGCPSSFGWL  455 (576)
Q Consensus       376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~  455 (576)
                                                                                                   .+.
T Consensus       406 -----------------------------------------------------------------------------~~~  408 (521)
T KOG0255|consen  406 -----------------------------------------------------------------------------GWL  408 (521)
T ss_pred             -----------------------------------------------------------------------------hHH
Confidence                                                                                         011


Q ss_pred             HHHHHHHHHHHhcCCcccccchhccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHH
Q 008137          456 AVVFLGAYIITYSPGMGTAPWIVNSEIYPLRYRGVGGGIAAVSNWTSNLIVSLTFLTLTEALGSAGTFLLFAGFSLLGLV  535 (576)
Q Consensus       456 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~  535 (576)
                      ..+...+..++.+.+.. ..+.+.+|++|+..|+.+.+..+....++++++|.+...... ......+.+++.++.+..+
T Consensus       409 ~~~~~~~~~~~~~~~~~-~~~~~~~el~pt~~r~~~~~~~~~~~~~~~i~ap~~~~~~~~-~~~~~~~~~~~~~~~l~~~  486 (521)
T KOG0255|consen  409 HWILPLLGKFFIGSAFN-LIFLYSAELIPTVVRNTAVGAISAAARLGSILAPLFPLLLRQ-MFPLLGLILFGWLALLLGL  486 (521)
T ss_pred             HHHHHHHHHHHHHHHHH-HHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hcccchHHHHHHHHHHHHH
Confidence            22222222222222333 336888999999999999999999999999999988765444 3333444446777777777


Q ss_pred             HHHhhccCCCCCCHHHHHHHHh
Q 008137          536 AIYLLVPETKGLAFEEVEKMLE  557 (576)
Q Consensus       536 ~~~~~~~~~~~~~~~~~~~~~~  557 (576)
                      +..+++|||+++.+.+..++.+
T Consensus       487 ~~~~~lpet~~~~l~~t~~~~~  508 (521)
T KOG0255|consen  487 LSLLLLPETKGKPLPGTLLDAE  508 (521)
T ss_pred             HHHhcCcccCCCCCchhHHHHH
Confidence            7778899999998755444333

>PRK12382 putative transporter; Provisional

Probab=99.97  E-value=3.9e-29  Score=264.95  Aligned_cols=362  Identities=17%  Similarity=0.155  Sum_probs=258.3

Q ss_pred             HHHHHHHhhhhhhhhHHHHHHH-HHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHH
Q 008137           33 SAGIGGLLFGYDTGVISGALLY-IKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFIGA  111 (576)
Q Consensus        33 ~~~l~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~  111 (576)
                      .+.++.++.........+.+|. +.+++|.+..+.   |++.+++.++..++++++|+++||+|||++++++.+...++.
T Consensus        19 ~~~~~~~~~~~~~~~~~p~l~~~l~~~lg~s~~~~---g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~   95 (392)
T PRK12382         19 RIAFAVFLTYMTVGLPLPVIPLFVHHDLGFGNTMV---GIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLAG   95 (392)
T ss_pred             HHHHHHHHHHHHHHHHhhhhhHHHHHhcCCcHHHH---HHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHH
Confidence            3444556666677788888886 578999988888   999999999999999999999999999999999988877765


Q ss_pred             HHHH---h-----cchHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 008137          112 IIMA---I-----APQPWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFTKAP  183 (576)
Q Consensus       112 ~~~~---~-----~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~~  183 (576)
                      +.+.   +     .++++.+++.|+++|++.+...+...+++.|++|+++|++++++.+.+..+|..+++++++.+.+..
T Consensus        96 ~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~~~  175 (392)
T PRK12382         96 LAYLLAAILPVSAPFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLHSHF  175 (392)
T ss_pred             HHHHhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            5332   2     3578999999999999999999999999999999999999999999999999999999999988777


Q ss_pred             chhHHHHHHhHHHHHHHHHHHhhccCChhHHhhcCCHHHHHHHHHHhCCchhhhHHHHHHHHHHHhhhhhhcccchhhHH
Q 008137          184 GTWRWMLGVAGLPAVVQFGLMMMLPESPRWLYRQNKVDEARAILEKIYPADQVEEEVNLLKQSVENEKAEEGLIGKDMIS  263 (576)
Q Consensus       184 ~~Wr~~f~v~~~~~~~~~~~~~~l~esp~~l~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (576)
                      + ||+.+.+..+..++.+......||.++.   +++.                                          .
T Consensus       176 g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~------------------------------------------~  209 (392)
T PRK12382        176 G-FAALALTTMVLPLLAWAFNGTVRKVPAH---AGER------------------------------------------P  209 (392)
T ss_pred             C-hHHHHHHHHHHHHHHHHHHHhccCCCCC---cccC------------------------------------------c
Confidence            6 9998777655544433332223332210   0000                                          0


Q ss_pred             HhhhhcccchhhhhhHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcCCchhHHHHHHHHHhHHHHHHHHHHHHhhcccCCh
Q 008137          264 RLKGAFGNKIVRRGLYAGVTVQVAQQFVGINTVMYYSPTIVQFAGFASKSTALALSLVTSGLNALGSIVSMAFVDKYGRR  343 (576)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dk~grr  343 (576)
                      +.++.++  ..++..+.     .+...........+.|.++++.+. +  ..+.......++.+++.++.|++.||+++|
T Consensus       210 ~~~~~~~--~~~~~~~~-----~~l~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~  279 (392)
T PRK12382        210 SLWSVVG--LIWKPGLG-----LALQGVGFAVIGTFVSLYFASKGW-A--MAGFTLTAFGGAFVLMRVLFGWMPDRFGGV  279 (392)
T ss_pred             hHHHHHH--HHHHhHHH-----HHHHHHHHhHHHHHHHHHHHhcCC-c--hhHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            0000000  00111111     111122234455566777776654 2  233444556667788999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccccccCCCCCCCCcccccCCCCcccccccccccccccCCCCCCCCCC
Q 008137          344 RLMIVSMFGLSSCLVALAVVFFQAAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAHKGNEYLPG  423 (576)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  423 (576)
                      +.+..+..+..++.+++.....                                                          
T Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~----------------------------------------------------------  301 (392)
T PRK12382        280 KVAIVSLLVETVGLLLLWLAPT----------------------------------------------------------  301 (392)
T ss_pred             eehHHHHHHHHHHHHHHHHccc----------------------------------------------------------
Confidence            9988877777766654433210                                                          


Q ss_pred             cccccccccccccccccccccccCCCCcchhHHHHHHHHHHHHhcCCcccccchhccccccccccccchhHHHHHHHHHH
Q 008137          424 ACLIDEKSTDTLCSDEHRTYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEIYPLRYRGVGGGIAAVSNWTSN  503 (576)
Q Consensus       424 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~g~  503 (576)
                                                   .+..+....+.+.+.+. ..+.......|.+|++.||++.|+.+....+|.
T Consensus       302 -----------------------------~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~  351 (392)
T PRK12382        302 -----------------------------AWVALAGAALTGAGCSL-IFPALGVEVVKRVPSQVRGTALGGYAAFQDIAY  351 (392)
T ss_pred             -----------------------------HHHHHHHHHHHHHHHHh-HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH
Confidence                                         12223333333333332 233444566788899999999999999999999


Q ss_pred             HHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHhhc
Q 008137          504 LIVSLTFLTLTEALGSAGTFLLFAGFSLLGLVAIYLLV  541 (576)
Q Consensus       504 ~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~  541 (576)
                      .++|.+.+.+.+..|++..|.+.+++.+++.+..++..
T Consensus       352 ~ig~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~  389 (392)
T PRK12382        352 GVSGPLAGMLATSFGYPSVFLAGAISAVLGIIVTILSF  389 (392)
T ss_pred             HHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHhhc
Confidence            99999999999999999999999888888877765543

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.97  E-value=1e-28  Score=259.99  Aligned_cols=285  Identities=16%  Similarity=0.182  Sum_probs=222.7

Q ss_pred             HHHHHHHHHhhhhhhhhHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHH
Q 008137           31 ALSAGIGGLLFGYDTGVISGALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFIG  110 (576)
Q Consensus        31 ~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~  110 (576)
                      +..+++..++...+...+.+.+|.+.++++.++.+.   +++.+++.++..+++++.|++.||+|||+++.++.++.+++
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~---g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~   83 (385)
T TIGR00710         7 ALLLGCLSILGPLGIDMYLPAFPEIAADLSTPASIV---QMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALS   83 (385)
T ss_pred             HHHHHHHHHHHHHHHHHhcccHHHHHHHhCCCHHHH---HHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHH
Confidence            334444456667788889999999999999998888   99999999999999999999999999999999999999999


Q ss_pred             HHHHHhcchHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHH
Q 008137          111 AIIMAIAPQPWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFTKAPGTWRWML  190 (576)
Q Consensus       111 ~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~Wr~~f  190 (576)
                      .++++++++++.+++.|++.|++.+...+...+++.|++|+++|++++++.+....+|..+++.+++.+.+..+ ||+.|
T Consensus        84 ~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~-~~~~~  162 (385)
T TIGR00710        84 SLGLALSNNIETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLS-WHAIF  162 (385)
T ss_pred             HHHHHHHccHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-HHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999887776 99999


Q ss_pred             HHhHHHHHHHHHH-HhhccCChhHHhhcCCHHHHHHHHHHhCCchhhhHHHHHHHHHHHhhhhhhcccchhhHHHhhhhc
Q 008137          191 GVAGLPAVVQFGL-MMMLPESPRWLYRQNKVDEARAILEKIYPADQVEEEVNLLKQSVENEKAEEGLIGKDMISRLKGAF  269 (576)
Q Consensus       191 ~v~~~~~~~~~~~-~~~l~esp~~l~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (576)
                      ++.+++.++..+. ++..||+++...+ .+.++                                      ..+..++.+
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--------------------------------------~~~~~~~~~  203 (385)
T TIGR00710       163 AFLSLAGILLSALIFFILPETLPYEAR-IQIST--------------------------------------YFETFLLLL  203 (385)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCCCCccc-CCHHH--------------------------------------HHHHHHHHH
Confidence            9988877766555 4456665431100 00000                                      002233444


Q ss_pred             ccchhhhhhHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcCCchhHHHHHHHHHhHHHHHHHHHHHHhhcccCChHHHHHH
Q 008137          270 GNKIVRRGLYAGVTVQVAQQFVGINTVMYYSPTIVQFAGFASKSTALALSLVTSGLNALGSIVSMAFVDKYGRRRLMIVS  349 (576)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dk~grr~~~~~~  349 (576)
                      +++..+..     ................+.|.++++..+.+..+.+.+.....++.+++.++.+++.||+++|+.+..+
T Consensus       204 ~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~  278 (385)
T TIGR00710       204 KSKMFWGY-----ALIYGASFGGFFAFFSGAPFVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKWGAKSLLRMG  278 (385)
T ss_pred             cCchhHHH-----HHHHHHHHHHHHHHHHcChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence            44443322     2222222333445566678777755445777788888888888999999999999999999998888


Q ss_pred             HHHHHHHHHHHHHH
Q 008137          350 MFGLSSCLVALAVV  363 (576)
Q Consensus       350 ~~~~~~~~~~~~~~  363 (576)
                      +.+..++.+++...
T Consensus       279 ~~~~~~~~~~~~~~  292 (385)
T TIGR00710       279 LILFAVSAVLLEIT  292 (385)
T ss_pred             HHHHHHHHHHHHHH
Confidence            77777766655543

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.97  E-value=4.9e-29  Score=259.73  Aligned_cols=355  Identities=13%  Similarity=0.062  Sum_probs=264.3

Q ss_pred             HHHHHHhhhhhhhhHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHH
Q 008137           34 AGIGGLLFGYDTGVISGALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFIGAII  113 (576)
Q Consensus        34 ~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~  113 (576)
                      +.++.++..+......+.+|.+..+++.+..+.   +++.+++.++..+++++.|+++||+|||++++.+.++.+++.++
T Consensus         4 l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~---g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~   80 (365)
T TIGR00900         4 LFAAQLISLIGTAITQVALPLYVLAGTGSASVL---SLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAV   80 (365)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHH---HHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHH
Confidence            345667778888888899999999999888877   99999999999999999999999999999999999999999988


Q ss_pred             HHhcc-----hHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHH
Q 008137          114 MAIAP-----QPWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFTKAPGTWRW  188 (576)
Q Consensus       114 ~~~~~-----~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~Wr~  188 (576)
                      .++++     +++.+++.|+++|++.+...+...+++.|++|+++|+++.++.+....+|.++++++++.+.+..+ ||+
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g-~~~  159 (365)
T TIGR00900        81 LPFVALLGGLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLG-IKW  159 (365)
T ss_pred             HHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhh-HHH
Confidence            88887     999999999999999999999999999999999999999999999999999999999999987766 999


Q ss_pred             HHHHhHHHHHHHHHHHhhc--cCChhHHhhcCCHHHHHHHHHHhCCchhhhHHHHHHHHHHHhhhhhhcccchhhHHHhh
Q 008137          189 MLGVAGLPAVVQFGLMMML--PESPRWLYRQNKVDEARAILEKIYPADQVEEEVNLLKQSVENEKAEEGLIGKDMISRLK  266 (576)
Q Consensus       189 ~f~v~~~~~~~~~~~~~~l--~esp~~l~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (576)
                      .|++.++..++..+..+.+  ||+++.  ++++.++  +             ..                  ++..+..+
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~--~-------------~~------------------~~~~~~~~  204 (365)
T TIGR00900       160 AIWVDAVGFAISALLIVSVRIPELAAS--EIQALSN--A-------------VL------------------RDTREGIK  204 (365)
T ss_pred             HHHHHHHHHHHHHHHHHhcccccCCCc--cccccch--h-------------HH------------------HHHHhHHH
Confidence            9999887766655544333  332210  0000000  0             00                  00012233


Q ss_pred             hhcccchhhhhhHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcCCchhHHHHHHHHHhHHHHHHHHHHHHhhcccCChHHH
Q 008137          267 GAFGNKIVRRGLYAGVTVQVAQQFVGINTVMYYSPTIVQFAGFASKSTALALSLVTSGLNALGSIVSMAFVDKYGRRRLM  346 (576)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dk~grr~~~  346 (576)
                      ..++++..+...    ................+.|.+.++..+.+..+.+.......++.+++.++.+++.||++||+.+
T Consensus       205 ~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  280 (365)
T TIGR00900       205 FVLKNPLLRTLL----LLALLFNLVFAPAIVALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMALM  280 (365)
T ss_pred             HHHcCcHHHHHH----HHHHHHHHHHHHHHHHHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHH
Confidence            444554433221    1111112222222336778888774444677778888888888999999999999999999988


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhcCCCccccccccCCCCCCCCcccccCCCCcccccccccccccccCCCCCCCCCCccc
Q 008137          347 IVSMFGLSSCLVALAVVFFQAAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAHKGNEYLPGACL  426 (576)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  426 (576)
                      ..+..+..++.+++.+...                                                             
T Consensus       281 ~~~~~~~~~~~~~~~~~~~-------------------------------------------------------------  299 (365)
T TIGR00900       281 TGAIFVIGLAILVVGLTPP-------------------------------------------------------------  299 (365)
T ss_pred             HHHHHHHHHHHHHHHhhch-------------------------------------------------------------
Confidence            8776666665554443210                                                             


Q ss_pred             ccccccccccccccccccccCCCCcchhHHHHHHHHHHHHhcCCcccccchhccccccccccccchhHHHHHHHHHHHHH
Q 008137          427 IDEKSTDTLCSDEHRTYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEIYPLRYRGVGGGIAAVSNWTSNLIV  506 (576)
Q Consensus       427 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~g~~~~  506 (576)
                                               ..+...+..++.+++.+ ...+....+..|..|++.||++.|+.+....++..++
T Consensus       300 -------------------------~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g  353 (365)
T TIGR00900       300 -------------------------NFPLFLVLWFAIGVGYG-PINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLG  353 (365)
T ss_pred             -------------------------hHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence                                     01333344444444443 2344566788899999999999999999999999999


Q ss_pred             HHHHHHHHHhhc
Q 008137          507 SLTFLTLTEALG  518 (576)
Q Consensus       507 ~~~~~~l~~~~g  518 (576)
                      |.+.|.+.|..|
T Consensus       354 ~~~~g~l~~~~g  365 (365)
T TIGR00900       354 LILAGPLADHLG  365 (365)
T ss_pred             HHHHHHHHHHcC
Confidence            999999998754

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.97  E-value=2.1e-28  Score=260.28  Aligned_cols=375  Identities=16%  Similarity=0.092  Sum_probs=269.4

Q ss_pred             HHHHHHHhhhhhhhhHHHHHHHHHHhhccchhhh--HHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHH
Q 008137           33 SAGIGGLLFGYDTGVISGALLYIKEDFRDVEKKT--WLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFIG  110 (576)
Q Consensus        33 ~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~--~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~  110 (576)
                      .+.++.++..+......+.+|.+.++++.+..+.  .+.|++.+++.++..+++++.|+++||+|||+.+..+.++..++
T Consensus        18 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~   97 (408)
T PRK09874         18 VAWLGCFLTGAAFSLVMPFLPLYVEQLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSALGMGIV   97 (408)
T ss_pred             HHHHHHHHHHHHHHHhhhhHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHHHHHHHHH
Confidence            3455667777888889999999999999876543  34589999999999999999999999999999999999999999


Q ss_pred             HHHHHhcchHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHH
Q 008137          111 AIIMAIAPQPWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFTKAPGTWRWML  190 (576)
Q Consensus       111 ~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~Wr~~f  190 (576)
                      .++++++++++.+++.|++.|++.+ ..+....++.|++|+++|+++.++.+....+|.++++.+++.+.+..+ ||+.|
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~-~~~~~  175 (408)
T PRK09874         98 MVLMGLAQNIWQFLILRALLGLLGG-FVPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLADSYG-LRPVF  175 (408)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHhhh-hHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-HHHHH
Confidence            9999999999999999999999865 567788899999999999999999999999999999999999887766 99999


Q ss_pred             HHhHHHHHHHHHH-HhhccCChhHHhhcCCHHHHHHHHHHhCCchhhhHHHHHHHHHHHhhhhhhcccchhhHHHhhhhc
Q 008137          191 GVAGLPAVVQFGL-MMMLPESPRWLYRQNKVDEARAILEKIYPADQVEEEVNLLKQSVENEKAEEGLIGKDMISRLKGAF  269 (576)
Q Consensus       191 ~v~~~~~~~~~~~-~~~l~esp~~l~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (576)
                      ++.+++.++..+. ++.++|+++... +.+..+.                                       ++..+.+
T Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---------------------------------------~~~~~~~  215 (408)
T PRK09874        176 FITASVLFLCFLVTLFCIRENFQPVS-KKEMLHM---------------------------------------REVVTSL  215 (408)
T ss_pred             HHHHHHHHHHHHHHHHHhccCccccc-chhhhHH---------------------------------------HHHHHhC
Confidence            9988877766555 445665432100 0000000                                       0111222


Q ss_pred             ccchhhhhhHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcCCchh---HHHHHHHHHhHHHHHHHHHHHHhhcccCChHHH
Q 008137          270 GNKIVRRGLYAGVTVQVAQQFVGINTVMYYSPTIVQFAGFASKS---TALALSLVTSGLNALGSIVSMAFVDKYGRRRLM  346 (576)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ig~~~~g~l~dk~grr~~~  346 (576)
                      +++.....    .................+.+.|..+.+.....   ..+.+.....++.+++.+..|++.||++||+.+
T Consensus       216 ~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~  291 (408)
T PRK09874        216 KNPKLVLS----LFVTTLIIQVATGSIAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRIGPEKIL  291 (408)
T ss_pred             cCCchHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhH
Confidence            33322211    11111111222233444556666655442222   234444556677788889999999999999998


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhcCCCccccccccCCCCCCCCcccccCCCCcccccccccccccccCCCCCCCCCCccc
Q 008137          347 IVSMFGLSSCLVALAVVFFQAAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAHKGNEYLPGACL  426 (576)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  426 (576)
                      ..+..+..++.+.+.....                                                             
T Consensus       292 ~~~~~~~~~~~~~~~~~~~-------------------------------------------------------------  310 (408)
T PRK09874        292 ITALIFSVLLLIPMSFVQT-------------------------------------------------------------  310 (408)
T ss_pred             HHHHHHHHHHHHHHHHhcc-------------------------------------------------------------
Confidence            8877766555544332211                                                             


Q ss_pred             ccccccccccccccccccccCCCCcchhHHHHHHHHHHHHhcCCcccccchhccccccccccccchhHHHHHHHHHHHHH
Q 008137          427 IDEKSTDTLCSDEHRTYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEIYPLRYRGVGGGIAAVSNWTSNLIV  506 (576)
Q Consensus       427 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~g~~~~  506 (576)
                                                .+...+...+.+.+.+ ...+...+...+..|++.+|+.+++.+....+|..++
T Consensus       311 --------------------------~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~g  363 (408)
T PRK09874        311 --------------------------PLQLGILRFLLGAADG-ALLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTG  363 (408)
T ss_pred             --------------------------HHHHHHHHHHHHhhhH-hhHHHHHHHHHHhCCcccceeeehHHHHHHHHHHHhh
Confidence                                      1232333333333332 2334444566777888999999999999999999999


Q ss_pred             HHHHHHHHHhhccchhhHHHHHHHHHHHHHHHhhc
Q 008137          507 SLTFLTLTEALGSAGTFLLFAGFSLLGLVAIYLLV  541 (576)
Q Consensus       507 ~~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~  541 (576)
                      |.+.|.+.+..|++..|++.+++.+++.+..++..
T Consensus       364 p~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~  398 (408)
T PRK09874        364 PLMGAAISANYGFRAVFLVTAGVVLFNAVYSWNSL  398 (408)
T ss_pred             HHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999988888877765544

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.97  E-value=1.6e-28  Score=259.44  Aligned_cols=360  Identities=15%  Similarity=0.104  Sum_probs=262.7

Q ss_pred             HHHHHHHHHhhhhhhhhHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHH
Q 008137           31 ALSAGIGGLLFGYDTGVISGALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFIG  110 (576)
Q Consensus        31 ~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~  110 (576)
                      +..+.++.++...+.....+.+|.+.+++|.+..+.   |++.+.+.++..+++++.|+++||+|||+++.++.++.+++
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~---G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~~~~~~   84 (381)
T PRK03633          8 VLLLLCGLLLLTLAIAVLNTLVPLWLAQEHLPTWQV---GVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASLIFAAG   84 (381)
T ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHHHHcCCCHHHH---HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445567778889999999999999999999988888   99999999999999999999999999999999999999999


Q ss_pred             HHHHHhcchHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHH
Q 008137          111 AIIMAIAPQPWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFTKAPGTWRWML  190 (576)
Q Consensus       111 ~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~Wr~~f  190 (576)
                      .++++++++++.++++|+++|++.+...+.....+.+..++++|+++++.++.+.++|..+|+.+++.+.+... |+..+
T Consensus        85 ~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~-~~~~~  163 (381)
T PRK03633         85 CAGLGLMVGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKVSTELM-SVLPW  163 (381)
T ss_pred             HHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc-chHHH
Confidence            99999999999999999999999999999888888999999999999999999999999999999999876532 32222


Q ss_pred             HHhHHHHHHHHHHHh-hccCChhHHhhcCCHHHHHHHHHHhCCchhhhHHHHHHHHHHHhhhhhhcccchhhHHHhhhhc
Q 008137          191 GVAGLPAVVQFGLMM-MLPESPRWLYRQNKVDEARAILEKIYPADQVEEEVNLLKQSVENEKAEEGLIGKDMISRLKGAF  269 (576)
Q Consensus       191 ~v~~~~~~~~~~~~~-~l~esp~~l~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (576)
                       ..+......+...+ ..++++.    +++                                 ..        .+.++.+
T Consensus       164 -~~~~~~~~~~~~~~~~~~~~~~----~~~---------------------------------~~--------~~~~~~~  197 (381)
T PRK03633        164 -VTGLVLAAILPLLFTRILNQQA----ENH---------------------------------DS--------TSIWPML  197 (381)
T ss_pred             -HHHHHHHHHHHHHHhcccCCCC----CCC---------------------------------CC--------CCHHHHH
Confidence             22222221111111 1222100    000                                 00        1112233


Q ss_pred             ccchhhhhhHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcCCchhHHHHHHHHHhHHHHHHHHHHHHhhcccCChHHHHHH
Q 008137          270 GNKIVRRGLYAGVTVQVAQQFVGINTVMYYSPTIVQFAGFASKSTALALSLVTSGLNALGSIVSMAFVDKYGRRRLMIVS  349 (576)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dk~grr~~~~~~  349 (576)
                      +++..+.     .....+...........+.|.|+++.+. +....+.+.....++.+++.+..|++.||+++|+.+..+
T Consensus       198 ~~~~~~~-----~~~~~~~~~~~~~~~~~~lp~~~~~~g~-s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~  271 (381)
T PRK03633        198 KLRQARL-----GVNGCIISGIVLGSLYGLMPLYLNHQGM-SDASIGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQ  271 (381)
T ss_pred             HhcchHH-----HHHHHHHHHHHHHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHH
Confidence            3433221     1111222222334455678888887765 566667777788888899999999999999999988877


Q ss_pred             HHHHHHHHHHHHHHHHHhhhcCCCccccccccCCCCCCCCcccccCCCCcccccccccccccccCCCCCCCCCCcccccc
Q 008137          350 MFGLSSCLVALAVVFFQAAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAHKGNEYLPGACLIDE  429 (576)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  429 (576)
                      ..+..++.+++. . .                                                                
T Consensus       272 ~~~~~~~~~~~~-~-~----------------------------------------------------------------  285 (381)
T PRK03633        272 VFVVILGSIAML-S-Q----------------------------------------------------------------  285 (381)
T ss_pred             HHHHHHHHHHHh-h-h----------------------------------------------------------------
Confidence            777666554432 1 1                                                                


Q ss_pred             cccccccccccccccccCCCCcchhHHHHHHHHHHHHhcCCcccccchhccccccccccccchhHHHHHHHHHHHHHHHH
Q 008137          430 KSTDTLCSDEHRTYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEIYPLRYRGVGGGIAAVSNWTSNLIVSLT  509 (576)
Q Consensus       430 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~g~~~~~~~  509 (576)
                                              +.......+.+.+. ....|.......|..|++.++...+..+....+|..++|.+
T Consensus       286 ------------------------~~~~~~~~l~g~~~-~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~  340 (381)
T PRK03633        286 ------------------------AAMAPALFILGAAG-FTLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSF  340 (381)
T ss_pred             ------------------------HHHHHHHHHHHHHH-HhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                                    01111122222222 23345566677788888887888888888889999999999


Q ss_pred             HHHHHHhhccchhhHHHHHHHHHHHHHH
Q 008137          510 FLTLTEALGSAGTFLLFAGFSLLGLVAI  537 (576)
Q Consensus       510 ~~~l~~~~g~~~~~~~~~~~~~i~~~~~  537 (576)
                      .|.+.|..|+...|.+.+.+.++..+..
T Consensus       341 ~G~l~~~~g~~~~f~~~~~~~l~~~~~~  368 (381)
T PRK03633        341 TAMLMQNYSDNLLFIMIASVSFIYLLML  368 (381)
T ss_pred             HHHHHHHhCccHHHHHHHHHHHHHHHHH
Confidence            9999999999888888877777665443

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.97  E-value=3.9e-28  Score=257.31  Aligned_cols=281  Identities=18%  Similarity=0.174  Sum_probs=213.8

Q ss_pred             HHHHHHhhhhhhhhHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHH
Q 008137           34 AGIGGLLFGYDTGVISGALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFIGAII  113 (576)
Q Consensus        34 ~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~  113 (576)
                      ..+..+..........+.+|.+.++++.+..+.   ++..+.+.++..+++++.|+++||+|||+.++++.+++.++.++
T Consensus         8 ~~~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~---~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~   84 (392)
T PRK10473          8 SFALVLLYPAGIDMYLVGLPRIAADLNASEAQL---HIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLL   84 (392)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHhCCCHHHH---HHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHH
Confidence            334445566666677788999999999988888   99999999999999999999999999999999999999999999


Q ss_pred             HHhcchHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHh
Q 008137          114 MAIAPQPWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFTKAPGTWRWMLGVA  193 (576)
Q Consensus       114 ~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~Wr~~f~v~  193 (576)
                      +.++++++.+++.|+++|++.+...+....++.|++|+++|+++.++.+....+|..++|.+++.+.+..+ ||+.|++.
T Consensus        85 ~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g-~~~~~~~~  163 (392)
T PRK10473         85 CSLAETSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFP-WQSLFYTM  163 (392)
T ss_pred             HHHhCcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcC-hHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999998877666 99999998


Q ss_pred             HHHHHHHHHH-HhhccCChhHHhhcCCHHHHHHHHHHhCCchhhhHHHHHHHHHHHhhhhhhcccchhhHHHhhhhcccc
Q 008137          194 GLPAVVQFGL-MMMLPESPRWLYRQNKVDEARAILEKIYPADQVEEEVNLLKQSVENEKAEEGLIGKDMISRLKGAFGNK  272 (576)
Q Consensus       194 ~~~~~~~~~~-~~~l~esp~~l~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (576)
                      +++.++..+. .+.+||+++..  +++.+..                                      .+..++.++++
T Consensus       164 ~~~~~i~~~~~~~~~~~~~~~~--~~~~~~~--------------------------------------~~~~~~~~~~~  203 (392)
T PRK10473        164 AAMGILVLLLSLFILKETRPAR--APAASSK--------------------------------------PRENSESLLNR  203 (392)
T ss_pred             HHHHHHHHHHHHHHcCCCCCcc--cCCccch--------------------------------------HHHHHHHHhCH
Confidence            8877766554 45567764211  0000000                                      01112233343


Q ss_pred             hhhhhhHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcCCchhHHHHHHHHHhHHHHHHHHHHHHhhcccCChHHHHHHHHH
Q 008137          273 IVRRGLYAGVTVQVAQQFVGINTVMYYSPTIVQFAGFASKSTALALSLVTSGLNALGSIVSMAFVDKYGRRRLMIVSMFG  352 (576)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dk~grr~~~~~~~~~  352 (576)
                      ..+.......     ...........+.|.++++..+.+....+.+.....++.+++.++.+++.||+|||+.+..++.+
T Consensus       204 ~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~g~~~~~~~~~~~  278 (392)
T PRK10473        204 FFLSRLVITT-----LSVTVILTFVNTSPVLLMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIFKPRTLMLTSQVL  278 (392)
T ss_pred             HHHHHHHHHH-----HHHHHHHHHHHhCHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            3332222111     11112233444556666554344666777777788888999999999999999999999888877


Q ss_pred             HHHHHHHHHHH
Q 008137          353 LSSCLVALAVV  363 (576)
Q Consensus       353 ~~~~~~~~~~~  363 (576)
                      ..++.+++...
T Consensus       279 ~~~~~~~~~~~  289 (392)
T PRK10473        279 FLAAGITLALS  289 (392)
T ss_pred             HHHHHHHHHHH
Confidence            77766655544

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.97  E-value=4.1e-30  Score=269.07  Aligned_cols=375  Identities=18%  Similarity=0.177  Sum_probs=259.9

Q ss_pred             HHHhhhhhhhhHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHh
Q 008137           37 GGLLFGYDTGVISGALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFIGAIIMAI  116 (576)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~  116 (576)
                      +.+..++++..++...|.+.++++.+..+.   +++.+++.++..+++++.|+++||+|||++++++.++.+++.+++++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~---g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~   79 (379)
T TIGR00881         3 GYAAYYLVRKNFALAMPYLVEEIGLSKTDL---GLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGF   79 (379)
T ss_pred             hhhHHHHhHHhhhhhhHHHHHHhCCCHhHH---HHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHH
Confidence            456778899999999999999999998888   99999999999999999999999999999999999999999999999


Q ss_pred             cchHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHH-HHHHHhcCCCchhHHHHHHhHH
Q 008137          117 APQPWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAY-LINLAFTKAPGTWRWMLGVAGL  195 (576)
Q Consensus       117 ~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~-~l~~~l~~~~~~Wr~~f~v~~~  195 (576)
                      +++++.+++.|++.|++.+...+...+++.|++|+++|++++++.+.+..+|..+++ .+++.+.+..+ ||+.|++.++
T Consensus        80 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~  158 (379)
T TIGR00881        80 STSLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYS-WHWVFIVPGI  158 (379)
T ss_pred             hhhHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcCC-chhHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999 46666666655 9999999888


Q ss_pred             HHHHHHHH-HhhccCChhHHhhcCCHHHHHHHHHHhCCchhhhHHHHHHHHHHHhhhhhhcccchhhHHHhhhhcccchh
Q 008137          196 PAVVQFGL-MMMLPESPRWLYRQNKVDEARAILEKIYPADQVEEEVNLLKQSVENEKAEEGLIGKDMISRLKGAFGNKIV  274 (576)
Q Consensus       196 ~~~~~~~~-~~~l~esp~~l~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (576)
                      +.++..+. +++.+|+|+....+.+.++..         ++.+.         ..+..++  .........+..++++..
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~---------~~~~~~~--~~~~~~~~~~~~~~~~~~  218 (379)
T TIGR00881       159 IAIIVSLICFLLLRDSPQSCGLPPAEEMPN---------EEPDG---------DAEKKEE--ELTKKQIFLQYVLLNKVL  218 (379)
T ss_pred             HHHHHHHHHheeeCCCccccccCccccCcc---------ccccc---------ccccccc--cccchHHHHHHHHhcchH
Confidence            77665444 555677654211111000000         00000         0000000  000000223334444432


Q ss_pred             hhhhHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcCCchhHHHHHHHHHhHHHHHHHHHHHHhhcccCChHHHHHHHHHHH
Q 008137          275 RRGLYAGVTVQVAQQFVGINTVMYYSPTIVQFAGFASKSTALALSLVTSGLNALGSIVSMAFVDKYGRRRLMIVSMFGLS  354 (576)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dk~grr~~~~~~~~~~~  354 (576)
                           +......+...........+.|.++++..+.+..+.+.......++.+++.++.+++.||..+|+..........
T Consensus       219 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~  293 (379)
T TIGR00881       219 -----WYISLGYVFVYVVRTGILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMA  293 (379)
T ss_pred             -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHH
Confidence                 223333333444455667778888876544477778888888888999999999999998643322222112111


Q ss_pred             HHHHHHHHHHHHhhhcCCCccccccccCCCCCCCCcccccCCCCcccccccccccccccCCCCCCCCCCccccccccccc
Q 008137          355 SCLVALAVVFFQAAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAHKGNEYLPGACLIDEKSTDT  434 (576)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  434 (576)
                      .....+......                                                                    
T Consensus       294 ~~~~~~~~~~~~--------------------------------------------------------------------  305 (379)
T TIGR00881       294 LIIVSLLVYWLN--------------------------------------------------------------------  305 (379)
T ss_pred             HHHHHHHHHhcC--------------------------------------------------------------------
Confidence            111111111000                                                                    


Q ss_pred             ccccccccccccCCCCcchhHHHHHHHHHHHHhcCCcccccchhccccccccccccchhHHHHHHHHHHHHHHHHHHHHH
Q 008137          435 LCSDEHRTYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEIYPLRYRGVGGGIAAVSNWTSNLIVSLTFLTLT  514 (576)
Q Consensus       435 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~g~~~~~~~~~~l~  514 (576)
                                    +....+...+.....+. +..+..+....+..|.+|++.||++.|+.+....+|+.++|.+.|.+.
T Consensus       306 --------------~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~  370 (379)
T TIGR00881       306 --------------PAANPLMDLICLFALGF-LVYGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYLA  370 (379)
T ss_pred             --------------cchhHHHHHHHHHHHHH-HHhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhhhHHHHH
Confidence                          00001222222222222 222333344567789999999999999999999999999999999999


Q ss_pred             Hhhccchhh
Q 008137          515 EALGSAGTF  523 (576)
Q Consensus       515 ~~~g~~~~~  523 (576)
                      +..|++..|
T Consensus       371 ~~~g~~~~f  379 (379)
T TIGR00881       371 DGFGWAGAF  379 (379)
T ss_pred             HhhcccccC
Confidence            999887543

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=99.97  E-value=6.5e-28  Score=256.49  Aligned_cols=392  Identities=13%  Similarity=0.064  Sum_probs=275.9

Q ss_pred             cchHHHHHHHhhchhhHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHH-hhccchhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 008137           11 KTEFTECWNIVWTTPYIMKLALSAGIGGLLFGYDTGVISGALLYIKE-DFRDVEKKTWLQELIVSMAVAGAIFGAGFGGW   89 (576)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~-~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~   89 (576)
                      ++|+++-|+.. .++--++.+.+..++.++.......++++.+.+.+ +++.+..+.   +++.+++.+++.++.++.|+
T Consensus        17 ~pe~~~~w~~~-~~~~a~r~l~~s~~~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~---g~l~ai~~l~~al~rip~G~   92 (462)
T PRK15034         17 KPENPAFWENK-GKHIARRNLWISVSCLLLAFCVWMLFSAVTVNLNKIGFNFTTDQL---FLLTALPSVSGALLRVPYSF   92 (462)
T ss_pred             CCCChHHHhhc-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence            34555555443 22233456677777888888899999999999876 899999998   99999999999999999999


Q ss_pred             hhhccCchHHHHHHHHHHHHHHHHHHhc-----chHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHH
Q 008137           90 INDRFGRKISLLGADVLFFIGAIIMAIA-----PQPWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFL  164 (576)
Q Consensus        90 l~dr~Grr~~~~~~~~~~~i~~~~~~~~-----~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~  164 (576)
                      +.||+|.|+++.++.+++++.+++++++     ++++.+++.|++.|++ |..++.....+++|+|+++||+++|++...
T Consensus        93 l~Dr~G~R~v~~~~~ll~~i~~~~~~~a~~~~~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~  171 (462)
T PRK15034         93 MVPIFGGRRWTVFSTAILIIPCVWLGIAVQNPNTPFGIFIVIALLCGFA-GANFASSMGNISFFFPKAKQGSALGINGGL  171 (462)
T ss_pred             HHHHhCChHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhHhHHHHHHHHHH
Confidence            9999999999999999999999999987     8999999999999998 778999999999999999999999999666


Q ss_pred             HHHHHHHHHHHHHHhc-----CC------------CchhHHHHHHhHHHHHHHHHHH-hhccCChhHHhhcCCHHHHHHH
Q 008137          165 ITGGQFLAYLINLAFT-----KA------------PGTWRWMLGVAGLPAVVQFGLM-MMLPESPRWLYRQNKVDEARAI  226 (576)
Q Consensus       165 ~~~G~~l~~~l~~~l~-----~~------------~~~Wr~~f~v~~~~~~~~~~~~-~~l~esp~~l~~~~~~~~~~~~  226 (576)
                      .++|..+++++...+.     ..            ..+||..+++.+++.++..++. ++.++.|.   .+.+       
T Consensus       172 G~~G~~l~~~l~p~~i~~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~~~~~~~---~~~~-------  241 (462)
T PRK15034        172 GNLGVSVMQLVAPLVIFVPVFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSGMNDIAS---SRAS-------  241 (462)
T ss_pred             HhhHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCCccc---cccC-------
Confidence            6666655444443221     10            1138888888887776665554 34444321   0000       


Q ss_pred             HHHhCCchhhhHHHHHHHHHHHhhhhhhcccchhhHHHhhhhcccchhhhhhHHHHHHHHHHHHHhhHHHHhhhHHHHHh
Q 008137          227 LEKIYPADQVEEEVNLLKQSVENEKAEEGLIGKDMISRLKGAFGNKIVRRGLYAGVTVQVAQQFVGINTVMYYSPTIVQF  306 (576)
Q Consensus       227 l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (576)
                                                         .++..+.+|++..|     .+.+.++..+.++..+.++.|.|.++
T Consensus       242 -----------------------------------~~~~~~vlk~~~~W-----llslly~~tFG~fvg~s~~lp~~~~~  281 (462)
T PRK15034        242 -----------------------------------IADQLPVLQRLHLW-----LLSLLYLATFGSFIGFSAGFAMLAKT  281 (462)
T ss_pred             -----------------------------------HHHHHHHhCCCchh-----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                                               02233455555433     34444455666677788888998876


Q ss_pred             hcCCchhHHHHHHHHHhHHHHHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccccccCCCCC
Q 008137          307 AGFASKSTALALSLVTSGLNALGSIVSMAFVDKYGRRRLMIVSMFGLSSCLVALAVVFFQAAIHAPTVSQIESSHFGGNN  386 (576)
Q Consensus       307 ~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dk~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  386 (576)
                      ..  +............+...+.++++|+++||+|+++++.++++.+.++...+.......                   
T Consensus       282 ~~--~~~~~l~~~~l~~l~~~l~rplgG~LADRiG~~~vl~~~~i~~~i~~~~~~l~lp~~-------------------  340 (462)
T PRK15034        282 QF--PDVNILRLAFFGPFIGAIARSVGGAISDKFGGVRVTLINFIFMAIFSALLFLTLPGT-------------------  340 (462)
T ss_pred             Hc--ChHHHHHHHHHHHHHHHHHHHhhHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhccc-------------------
Confidence            43  222333333444566788899999999999999999988887777665433332100                   


Q ss_pred             CCCcccccCCCCcccccccccccccccCCCCCCCCCCcccccccccccccccccccccccCCCCcchhHHHHHHHHHHHH
Q 008137          387 TCPAYITDGNAKSWNCMDCLKAKCGFCAHKGNEYLPGACLIDEKSTDTLCSDEHRTYFISGCPSSFGWLAVVFLGAYIIT  466 (576)
Q Consensus       387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~  466 (576)
                                                                                    +...-+...+.+......
T Consensus       341 --------------------------------------------------------------~~~~~~~~~~~~~~l~~~  358 (462)
T PRK15034        341 --------------------------------------------------------------GSGNFIAFYAVFMGLFLT  358 (462)
T ss_pred             --------------------------------------------------------------cccHHHHHHHHHHHHHHH
Confidence                                                                          000112223333333344


Q ss_pred             hcCCcccccchhccccccc---------------------cccccchhHHHHHHHHHHHHHHHHHHHHHHhhcc-chhhH
Q 008137          467 YSPGMGTAPWIVNSEIYPL---------------------RYRGVGGGIAAVSNWTSNLIVSLTFLTLTEALGS-AGTFL  524 (576)
Q Consensus       467 ~~~~~~~~~~~~~~e~~p~---------------------~~rg~~~g~~~~~~~~g~~~~~~~~~~l~~~~g~-~~~~~  524 (576)
                      .+++.+. .+-++.+.+|.                     +..|.+.|+....+.+|+++.|.+++...+..|. ...|+
T Consensus       359 ~G~gngs-vfk~ip~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~g~~~~~~~  437 (462)
T PRK15034        359 AGLGSGS-TFQMIAVIFRQITIYRVKMKGGSDEQAQREAVTETAAALGFISAIGAVGGFFIPQAFGMSLNMTGSPVGAMK  437 (462)
T ss_pred             hcccchH-HHHhhHHHHhhhhhhcccccccchhHHhhHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHcCCcHHHHH
Confidence            4444333 33455666663                     2567889999999999999999999999888764 45678


Q ss_pred             HHHHHHHHHHHHHHhhc
Q 008137          525 LFAGFSLLGLVAIYLLV  541 (576)
Q Consensus       525 ~~~~~~~i~~~~~~~~~  541 (576)
                      .+.+..+++.++.|...
T Consensus       438 ~~~~~~~~~~~~~w~~y  454 (462)
T PRK15034        438 VFLIFYIVCVLLTWLVY  454 (462)
T ss_pred             HHHHHHHHHHHHHHHHh
Confidence            88888888888777654

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.97  E-value=2e-28  Score=253.06  Aligned_cols=346  Identities=26%  Similarity=0.337  Sum_probs=289.1

Q ss_pred             HHHHHHHhhhhhhhhHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHH
Q 008137           33 SAGIGGLLFGYDTGVISGALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFIGAI  112 (576)
Q Consensus        33 ~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~  112 (576)
                      .+.++.+...++.....+..|.+.++++.+..+.   +++.+...++..+++++.|+++||+|||+.+.++.++..++.+
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~   79 (352)
T cd06174           3 LLFLGFFLSGLDRGLLSPALPLLAEDLGLSASQA---GLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSL   79 (352)
T ss_pred             HHHHHHHHHHHhhhhhHhhHHHHHHHcCCCHHHH---HHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHH
Confidence            3456677788899999999999999999888887   9999999999999999999999999999999999999999999


Q ss_pred             HHHhcchHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHH
Q 008137          113 IMAIAPQPWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFTKAPGTWRWMLGV  192 (576)
Q Consensus       113 ~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~Wr~~f~v  192 (576)
                      +..++++++.+++.|++.|++.+...+...+++.|++|+++|++++++.+....+|..+++.+++.+.+..+ ||+.+++
T Consensus        80 ~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~  158 (352)
T cd06174          80 LLAFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESLG-WRWLFLI  158 (352)
T ss_pred             HHHHhccHHHHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhh-HHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999999988776 9999999


Q ss_pred             hHHHHHHHHHHHhhccCChhHHhhcCCHHHHHHHHHHhCCchhhhHHHHHHHHHHHhhhhhhcccchhhHHHhhhhcccc
Q 008137          193 AGLPAVVQFGLMMMLPESPRWLYRQNKVDEARAILEKIYPADQVEEEVNLLKQSVENEKAEEGLIGKDMISRLKGAFGNK  272 (576)
Q Consensus       193 ~~~~~~~~~~~~~~l~esp~~l~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (576)
                      .+++.++..+...+++  |                                                             
T Consensus       159 ~~~~~~~~~~~~~~~~--~-------------------------------------------------------------  175 (352)
T cd06174         159 LAILGLLLALLLLFLL--R-------------------------------------------------------------  175 (352)
T ss_pred             HHHHHHHHHHHHHHHH--H-------------------------------------------------------------
Confidence            8888777666654433  0                                                             


Q ss_pred             hhhhhhHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcCCchhHHHHHHHHHhHHHHHHHHHHHHhhcccCChH-HHHHHHH
Q 008137          273 IVRRGLYAGVTVQVAQQFVGINTVMYYSPTIVQFAGFASKSTALALSLVTSGLNALGSIVSMAFVDKYGRRR-LMIVSMF  351 (576)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dk~grr~-~~~~~~~  351 (576)
                           .++......+...........+.|.+.++..+.+..+.+.......++.+++.++.+++.||++||+ .+..+..
T Consensus       176 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  250 (352)
T cd06174         176 -----LLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLL  250 (352)
T ss_pred             -----HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence                 0222333333444456677778888887764447788888888999999999999999999999999 8888888


Q ss_pred             HHHHHHHHHHHHHHHhhhcCCCccccccccCCCCCCCCcccccCCCCcccccccccccccccCCCCCCCCCCcccccccc
Q 008137          352 GLSSCLVALAVVFFQAAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAHKGNEYLPGACLIDEKS  431 (576)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  431 (576)
                      +..++.+.+.....                                                                  
T Consensus       251 ~~~i~~~~~~~~~~------------------------------------------------------------------  264 (352)
T cd06174         251 LAALGLLLLALAPS------------------------------------------------------------------  264 (352)
T ss_pred             HHHHHHHHHHHhcc------------------------------------------------------------------
Confidence            87777776654321                                                                  


Q ss_pred             cccccccccccccccCCCCcchhHHHHHHHHHHHHhcCCcccccchhccccccccccccchhHHHHHHHHHHHHHHHHHH
Q 008137          432 TDTLCSDEHRTYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEIYPLRYRGVGGGIAAVSNWTSNLIVSLTFL  511 (576)
Q Consensus       432 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~g~~~~~~~~~  511 (576)
                                           .+.......+...+.+ ...+....+..|..|++.|++.+|+.+....++..+++.+.+
T Consensus       265 ---------------------~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g  322 (352)
T cd06174         265 ---------------------LALLLVALLLLGFGLG-FAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAG  322 (352)
T ss_pred             ---------------------HHHHHHHHHHHHHHHh-ccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                                 1333344444444443 345666788899999999999999999999999999999999


Q ss_pred             HHHHhhccchhhHHHHHHHHHHHHHHH
Q 008137          512 TLTEALGSAGTFLLFAGFSLLGLVAIY  538 (576)
Q Consensus       512 ~l~~~~g~~~~~~~~~~~~~i~~~~~~  538 (576)
                      .+.+..+++..+++.+++.+++.+..+
T Consensus       323 ~l~~~~~~~~~~~~~~~~~~i~~i~~~  349 (352)
T cd06174         323 LLLDTGGYGGVFLILAALALLAALLLL  349 (352)
T ss_pred             HHhcccCcchHHHHHHHHHHHHHHHhe
Confidence            999999999999999998888777654

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=99.97  E-value=1.5e-27  Score=254.73  Aligned_cols=271  Identities=14%  Similarity=0.199  Sum_probs=211.5

Q ss_pred             HHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHH
Q 008137           29 KLALSAGIGGLLFGYDTGVISGALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFF  108 (576)
Q Consensus        29 ~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~  108 (576)
                      .....+.+..++..++...+.+.+|.+.++++.+....   ++..+++.+++.++++++|+++||+|||++++.+.++++
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~p~l~~i~~~~~~~~~~~---~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~   92 (413)
T PRK15403         16 FFPMALILYDFAAYLTTDLIQPGIINVVRDFNADVSLA---PASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFT   92 (413)
T ss_pred             HHHHHHHHHHHHHHHHHHhhccCHHHHHHHhCCCHHHH---HHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHH
Confidence            34445566677788899999999999999999988888   999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcchHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHH
Q 008137          109 IGAIIMAIAPQPWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFTKAPGTWRW  188 (576)
Q Consensus       109 i~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~Wr~  188 (576)
                      +++++++++++++.++++|+++|++.+...+....++.|++|+++|+++++++.....+|..+||++++.+.+..+ ||+
T Consensus        93 ~~~~~~~~a~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~g-w~~  171 (413)
T PRK15403         93 LACAATLFTTSMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVH-WKV  171 (413)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-HHH
Confidence            9999999999999999999999999987777788889999999999999999999999999999999998887766 999


Q ss_pred             HHHHhHHHHHHHHHH-HhhccCChhHHhhcCCHHHHHHHHHHhCCchhhhHHHHHHHHHHHhhhhhhcccchhhHHHhhh
Q 008137          189 MLGVAGLPAVVQFGL-MMMLPESPRWLYRQNKVDEARAILEKIYPADQVEEEVNLLKQSVENEKAEEGLIGKDMISRLKG  267 (576)
Q Consensus       189 ~f~v~~~~~~~~~~~-~~~l~esp~~l~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (576)
                      .|++.+++.++.++. ++.+||+++..  +++.+.                                    ++..++++.
T Consensus       172 ~f~~~~~~~~i~~~~~~~~lp~~~~~~--~~~~~~------------------------------------~~~~~~~~~  213 (413)
T PRK15403        172 LFAIIAVMGLIAFVGLLLAMPETVKRG--AVPFSA------------------------------------KSVLRDFRN  213 (413)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCCcccc--CCCCCh------------------------------------HHHHHHHHH
Confidence            999998887776655 45578864310  000000                                    000133445


Q ss_pred             hcccchhhhhhHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcCCchhHHHHHHHHHhHHHHHHHHHHHHhhcccCChHHH
Q 008137          268 AFGNKIVRRGLYAGVTVQVAQQFVGINTVMYYSPTIVQFAGFASKSTALALSLVTSGLNALGSIVSMAFVDKYGRRRLM  346 (576)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dk~grr~~~  346 (576)
                      .++++.++.     ........+.....+..+.|.++++..+.+....++......++.+++..+.+.+.++..+++..
T Consensus       214 ll~~~~~~~-----~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~~~~~~~  287 (413)
T PRK15403        214 VFRNRLFLT-----GAATLSLSYIPMMSWVAVSPVILIDAGGMTTSQFAWTQVPVFGAVIVANAIVARFVKDPTEPRFI  287 (413)
T ss_pred             HHcCHHHHH-----HHHHHHHHHHHHHHHHHhChHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhHH
Confidence            556654443     22223334444556666789888887655777888877777777788877787776554444443

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.97  E-value=2.2e-28  Score=257.27  Aligned_cols=362  Identities=19%  Similarity=0.176  Sum_probs=249.4

Q ss_pred             HhhhhhhhhHHHHHHHHHHhhcc--chhhhHHHHHHHH-----HHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHH
Q 008137           39 LLFGYDTGVISGALLYIKEDFRD--VEKKTWLQELIVS-----MAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFIGA  111 (576)
Q Consensus        39 ~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~~~g~i~s-----~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~  111 (576)
                      +++++|+..++...+.+.+++..  ++.+.   +.+.+     ...++..+++++.|+++||+|||+++.++.++..++.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~   79 (394)
T TIGR00883         3 AVEWFDFYLYGFAAVLVFHTFFPPSGDPLV---ALLATFATFAAGFLARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGT   79 (394)
T ss_pred             chhHHHHHHHHHHHHHHHHHhcCCCCChHH---HHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHH
Confidence            56788999999999998888764  22222   33333     3444556789999999999999999999999999999


Q ss_pred             HHHHhcchHH--------HHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhcC--
Q 008137          112 IIMAIAPQPW--------VIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFTK--  181 (576)
Q Consensus       112 ~~~~~~~~~~--------~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~--  181 (576)
                      +++++++++.        .+++.|+++|++.+...+....++.|++|+++|+++.++.+.+..+|.+++++++..+..  
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~  159 (394)
T TIGR00883        80 LLIGLLPSYATIGIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLL  159 (394)
T ss_pred             HHHhhCCChhhhHHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            9999999875        488999999999999999999999999999999999999999999999999988776532  


Q ss_pred             ------CCchhHHHHHHhHHHHHHHHHHHhhccCChhHHhhcCCHHHHHHHHHHhCCchhhhHHHHHHHHHHHhhhhhhc
Q 008137          182 ------APGTWRWMLGVAGLPAVVQFGLMMMLPESPRWLYRQNKVDEARAILEKIYPADQVEEEVNLLKQSVENEKAEEG  255 (576)
Q Consensus       182 ------~~~~Wr~~f~v~~~~~~~~~~~~~~l~esp~~l~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~  255 (576)
                            .. +||+.|++.+++.++.......++|++++..++++.++                              .. 
T Consensus       160 ~~~~~~~~-~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------~~-  207 (394)
T TIGR00883       160 GDDALLEW-GWRIPFLVSAVLVLIGLYLRRNLEETPVFEKAQEKHKK------------------------------KR-  207 (394)
T ss_pred             CHHHhhcc-chHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHhcccc------------------------------cc-
Confidence                  33 49999999887776666556667777643211100000                              00 


Q ss_pred             ccchhhHHHhhhhcccchhhhhhHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcCCchhHHHHHHHHHhHHHHHHHHHHHH
Q 008137          256 LIGKDMISRLKGAFGNKIVRRGLYAGVTVQVAQQFVGINTVMYYSPTIVQFAGFASKSTALALSLVTSGLNALGSIVSMA  335 (576)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~  335 (576)
                             .+.++.++++.  +. +.......+...........+.|.++++..+.+....+.......++.+++.++.|+
T Consensus       208 -------~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~  277 (394)
T TIGR00883       208 -------GPIRETLTKHR--KP-FLLGLGLVIATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGA  277 (394)
T ss_pred             -------CCHHHHHHhch--HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHH
Confidence                   11222222221  11 222222233334445566677888886554446677777777888889999999999


Q ss_pred             hhcccCChHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccccccCCCCCCCCcccccCCCCcccccccccccccccCC
Q 008137          336 FVDKYGRRRLMIVSMFGLSSCLVALAVVFFQAAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAH  415 (576)
Q Consensus       336 l~dk~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  415 (576)
                      ++||+|||+.+.....+..+..+.+.......                                                
T Consensus       278 l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------------------  309 (394)
T TIGR00883       278 LSDRIGRRPVLIIFTVLAALLAVPLLMALLDS------------------------------------------------  309 (394)
T ss_pred             HHHHhchHHHHHHHHHHHHHHHHHHHHHHhcC------------------------------------------------
Confidence            99999999987655444433332221111100                                                


Q ss_pred             CCCCCCCCcccccccccccccccccccccccCCCCcchhHHHHHHHHHHHHhcCCcccccchhccccccccccccchhHH
Q 008137          416 KGNEYLPGACLIDEKSTDTLCSDEHRTYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEIYPLRYRGVGGGIA  495 (576)
Q Consensus       416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~~~g~~  495 (576)
                                                         ...+.......+...+.+ ...+....+..|.+|++.|+++.|+.
T Consensus       310 -----------------------------------~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~p~~~~~~~~~~~  353 (394)
T TIGR00883       310 -----------------------------------GSFTLFFFLVLGLALIGG-MYTGPMGSFLPELFPTEVRYTGASLA  353 (394)
T ss_pred             -----------------------------------CchHHHHHHHHHHHHHHH-HHhhhHHHHHHHhCCccceeeEeeeh
Confidence                                               001232333333333333 23345567889999999999999985


Q ss_pred             -HHHHHHHHHHHHHHHHHHHHhhc-cchhhHHHHHH
Q 008137          496 -AVSNWTSNLIVSLTFLTLTEALG-SAGTFLLFAGF  529 (576)
Q Consensus       496 -~~~~~~g~~~~~~~~~~l~~~~g-~~~~~~~~~~~  529 (576)
                       +..+.+|..++|.+.|.+.+..| ++..++.....
T Consensus       354 ~~~~~~~g~~~~p~~~g~l~~~~g~~~~~~~~~~~~  389 (394)
T TIGR00883       354 YNLAGAIFGGFAPYIAAALVAMTGDWYAIGYYLAAL  389 (394)
T ss_pred             hHhHHHHHhhHHHHHHHHHHHHcCcchhHHHHHHHH
Confidence             45567888899999999999988 55444444433

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>TIGR00897 2A0118 polyol permease family

Probab=99.97  E-value=1.3e-27  Score=254.48  Aligned_cols=375  Identities=14%  Similarity=0.059  Sum_probs=255.2

Q ss_pred             HHHHHHhhhhhhhhHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHH
Q 008137           34 AGIGGLLFGYDTGVISGALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFIGAII  113 (576)
Q Consensus        34 ~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~  113 (576)
                      ..++.++.........+.++.+.++++.+..+.   +++.+.+.++..+++++.|++.||+|||+++..+.+++++++++
T Consensus        18 ~~l~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~---g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~   94 (402)
T TIGR00897        18 GYIGVVVFMTGDGLEQGWLSPFLKALGLSPQQS---ASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHAA   94 (402)
T ss_pred             HHHHHHHHHHhhhhHHHhHHHHHHHhCCCHHHh---HHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHH
Confidence            334444444444444556677778999988888   99999999999999999999999999999999999999988775


Q ss_pred             HH---h-cchHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHH-HHHHHHHHHhcCCCchhHH
Q 008137          114 MA---I-APQPWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQ-FLAYLINLAFTKAPGTWRW  188 (576)
Q Consensus       114 ~~---~-~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~-~l~~~l~~~l~~~~~~Wr~  188 (576)
                      +.   + .++++.+++.|+++|++.+...+.....+.+++|+++|++++|+.+.+.++|. .+++++++.+.+..+ |+.
T Consensus        95 ~~~~~~~~~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g-~~~  173 (402)
T TIGR00897        95 FIVFGLGHANYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFG-EMN  173 (402)
T ss_pred             HHHHhccCccHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc-hHH
Confidence            53   3 35788899999999999998888888899999999999999999999999997 689999988887665 766


Q ss_pred             HHHHhHHHHHHHHHH-HhhccCChhHHhhcCCHHHHHHHHHHhCCchhhhHHHHHHHHHHHhhhhhhcccchhhHHHhhh
Q 008137          189 MLGVAGLPAVVQFGL-MMMLPESPRWLYRQNKVDEARAILEKIYPADQVEEEVNLLKQSVENEKAEEGLIGKDMISRLKG  267 (576)
Q Consensus       189 ~f~v~~~~~~~~~~~-~~~l~esp~~l~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (576)
                      .++......++..+. .++.++.++.. .++++++                 .                  .+..+..+.
T Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-----------------~------------------~~~~~~~~~  217 (402)
T TIGR00897       174 TLWSALAFVLTGGVIALFSNKDIFTPQ-HMQTREK-----------------F------------------SELGKAATI  217 (402)
T ss_pred             HHHHHHHHHHHHHHHHHhccCCCCCcc-cccCCcc-----------------h------------------hhHHHHHHH
Confidence            655544433333333 33344332100 0000000                 0                  000022334


Q ss_pred             hcccchhhhhhHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcCCchhHHHHHHHHHhHHHHHHHHHHHHhhcccCChHHHH
Q 008137          268 AFGNKIVRRGLYAGVTVQVAQQFVGINTVMYYSPTIVQFAGFASKSTALALSLVTSGLNALGSIVSMAFVDKYGRRRLMI  347 (576)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dk~grr~~~~  347 (576)
                      .++++..+.     .....+.+.........+.|.++++.+. +..+.+.+.....++++++.++.|+++||++||+.+.
T Consensus       218 ~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~p~~~~~~g~-s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~  291 (402)
T TIGR00897       218 LFTNPNVLL-----GGMVRIINTIGLFGFAVFLPMFVAELGF-STSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVR  291 (402)
T ss_pred             HHcChhHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHcCC-ChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHH
Confidence            445543322     2222333444556677788999988766 5556666667778889999999999999999888764


Q ss_pred             -HHHHHHHHHHHHHHHHHHHhhhcCCCccccccccCCCCCCCCcccccCCCCcccccccccccccccCCCCCCCCCCccc
Q 008137          348 -VSMFGLSSCLVALAVVFFQAAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAHKGNEYLPGACL  426 (576)
Q Consensus       348 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  426 (576)
                       .+.+...++.+.+........                                                          
T Consensus       292 ~~~~l~~~~~~~~l~~~~~~~~----------------------------------------------------------  313 (402)
T TIGR00897       292 WFGGVGCGIFTLALYYIPQHFG----------------------------------------------------------  313 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHccC----------------------------------------------------------
Confidence             233333333222222111000                                                          


Q ss_pred             ccccccccccccccccccccCCCCcchhHHHHHHHHHHHHhcCCcccccchhccccccccccccchhHHHHHHHHHHHHH
Q 008137          427 IDEKSTDTLCSDEHRTYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEIYPLRYRGVGGGIAAVSNWTSNLIV  506 (576)
Q Consensus       427 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~g~~~~  506 (576)
                                              +..+...+...+.+.+.. +..+.. ....|..| +.||++.|+.+....+++.++
T Consensus       314 ------------------------~~~~~~~~~~~~~G~~~~-~~~~~~-~~~~~~~~-~~~g~~~g~~~~~~~lg~~~g  366 (402)
T TIGR00897       314 ------------------------HSFAVALIIAIALGIFLA-GYVPLA-AVFPTLAP-KHKGAAMSVLNLSAGLSAFLA  366 (402)
T ss_pred             ------------------------CcHHHHHHHHHHHHHHHH-HHHHHH-HHHHhhCc-chhHHHHHHHHHHHHHHHHHH
Confidence                                    001222233333333332 223332 44567654 689999999999999999999


Q ss_pred             HHHHHHHHHhhccchhhHHHHHHHHHHHHHHHh
Q 008137          507 SLTFLTLTEALGSAGTFLLFAGFSLLGLVAIYL  539 (576)
Q Consensus       507 ~~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~  539 (576)
                      |.+.+.+.+..|+...+++.+++.+++.+...+
T Consensus       367 p~i~g~l~~~~g~~~~~~~~a~~~~i~~~~~~~  399 (402)
T TIGR00897       367 PAIAVLFIGFFGAIGVVWIFAALYVVSAFLTAF  399 (402)
T ss_pred             HHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999888887766654

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.97  E-value=9e-28  Score=252.11  Aligned_cols=363  Identities=14%  Similarity=0.096  Sum_probs=257.7

Q ss_pred             HHHHhhhhhhhhHHHHHHH-HHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHH-HHHHHHHHHHHH
Q 008137           36 IGGLLFGYDTGVISGALLY-IKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLL-GADVLFFIGAII  113 (576)
Q Consensus        36 l~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~-~~~~~~~i~~~~  113 (576)
                      +..++.++......+.+|. +.+++|.+..+.   |++.+++.+...+.+++.|+++||+|||+.++ .+.++..++.++
T Consensus         4 ~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~---g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~   80 (375)
T TIGR00899         4 LVAFLTGIAGALQFPTLSLFLSEEVRARPAMI---GLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALACLL   80 (375)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHcccCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHH
Confidence            3456777888888898887 467899988888   99999999999999999999999999988755 456666778888


Q ss_pred             HHhcchHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHH--HHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHH
Q 008137          114 MAIAPQPWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGAL--VSANGFLITGGQFLAYLINLAFTKAPGTWRWMLG  191 (576)
Q Consensus       114 ~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~--~~~~~~~~~~G~~l~~~l~~~l~~~~~~Wr~~f~  191 (576)
                      ++++++++.+++.|+++|.+.+...|...++..|+.|+++|++.  .+....+.++|..+++++++.+.+..+ ||+.|+
T Consensus        81 ~~~~~~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~~-~~~~f~  159 (375)
T TIGR00899        81 FAWNRNYFLLLVLGVLLSSFASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALGFG-FTVMFL  159 (375)
T ss_pred             HHhcchHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHhcc-cHHHHH
Confidence            99999999999999999988888888888999999887777654  578888889999999999999988776 999999


Q ss_pred             HhHHHHHHHHHH-HhhccCChhHHhhcCCHHHHHHHHHHhCCchhhhHHHHHHHHHHHhhhhhhcccchhhHHHhhhhcc
Q 008137          192 VAGLPAVVQFGL-MMMLPESPRWLYRQNKVDEARAILEKIYPADQVEEEVNLLKQSVENEKAEEGLIGKDMISRLKGAFG  270 (576)
Q Consensus       192 v~~~~~~~~~~~-~~~l~esp~~l~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (576)
                      +.+++.++..+. ++++||.|++...+.+    +                                      .+.++.++
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~--------------------------------------~~~~~~~~  197 (375)
T TIGR00899       160 TAALAFVLCGVLVWLFLPSYPRGAPGALT----R--------------------------------------LEVRGLLA  197 (375)
T ss_pred             HHHHHHHHHHHHHHHhCCCcccCcccccC----c--------------------------------------chhhhhhc
Confidence            998887766555 4557886642110000    0                                      00111222


Q ss_pred             cchhhhhhHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcCCchhHHHHHHHHHhHHHHHHHHHHHHhhcccCChHHHHHHH
Q 008137          271 NKIVRRGLYAGVTVQVAQQFVGINTVMYYSPTIVQFAGFASKSTALALSLVTSGLNALGSIVSMAFVDKYGRRRLMIVSM  350 (576)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dk~grr~~~~~~~  350 (576)
                      ++..+..     ....+..+........+.|.++++..+.+....+.......+..+++.++.|++.||++||+.+..+.
T Consensus       198 ~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~  272 (375)
T TIGR00899       198 SRDTRLL-----FVACTLMWGCNILYIINMPLLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAA  272 (375)
T ss_pred             CcchHHH-----HHHHHHHHHHHHHHHhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHH
Confidence            3322221     11111122223334455677765544446666666666666667788899999999999999887766


Q ss_pred             HHHHHHHHHHHHHHHHhhhcCCCccccccccCCCCCCCCcccccCCCCcccccccccccccccCCCCCCCCCCccccccc
Q 008137          351 FGLSSCLVALAVVFFQAAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAHKGNEYLPGACLIDEK  430 (576)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  430 (576)
                      ++..++...+.....                                                                 
T Consensus       273 ~~~~~~~~~~~~~~~-----------------------------------------------------------------  287 (375)
T TIGR00899       273 LAGVAFYTGLAADNS-----------------------------------------------------------------  287 (375)
T ss_pred             HHHHHHHHHHHHHHH-----------------------------------------------------------------
Confidence            654444333222111                                                                 


Q ss_pred             ccccccccccccccccCCCCcchhHHHHHHHHHHHHhcCCcccccchhccccccccccccchhHHHHHHHHHHHHHHHHH
Q 008137          431 STDTLCSDEHRTYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEIYPLRYRGVGGGIAAVSNWTSNLIVSLTF  510 (576)
Q Consensus       431 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~g~~~~~~~~  510 (576)
                                            .+..+....+.+.+.+. ..+....+..|..|+ .++++.|+.+...++|..++|.+.
T Consensus       288 ----------------------~~~~~~~~~~~g~~~g~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~  343 (375)
T TIGR00899       288 ----------------------LWALLMLQLLNAIFIGI-LAGIGMLYFQDLMPG-RAGAATTLYTNTGRVGWIIAGSVG  343 (375)
T ss_pred             ----------------------HHHHHHHHHHHHHHHHH-HHHHHHHHHHHhCcc-hhhHHHHHHHHHHHHHHHHHHHHH
Confidence                                  12222222232333221 234445677788876 467999999999999999999999


Q ss_pred             HHHHHhhccchhhHHHHHHHHHHHHHHH
Q 008137          511 LTLTEALGSAGTFLLFAGFSLLGLVAIY  538 (576)
Q Consensus       511 ~~l~~~~g~~~~~~~~~~~~~i~~~~~~  538 (576)
                      |.+.+..|++..|++.+++.+++.+...
T Consensus       344 g~~~~~~g~~~~~~~~~~~~~~~~~~~~  371 (375)
T TIGR00899       344 GILAERWSYHAVYWFAIVMLIVALFCLL  371 (375)
T ss_pred             HHHHHhccchhHHHHHHHHHHHHHHHHh
Confidence            9999999999888888888777776653

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.97  E-value=1.3e-28  Score=255.56  Aligned_cols=348  Identities=22%  Similarity=0.335  Sum_probs=256.1

Q ss_pred             HHHHHhhhhhhhhHHHHHH-HHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHH
Q 008137           35 GIGGLLFGYDTGVISGALL-YIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFIGAII  113 (576)
Q Consensus        35 ~l~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~  113 (576)
                      +++.++..++...+.+.+| .+.+++|.+..+.   +++.+++.++..+++++.|+++||+|||+++.++.++.+++.++
T Consensus         2 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~---~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~   78 (352)
T PF07690_consen    2 FLAFFLSGFGFSIISPALPLYLAEELGLSPSQI---GLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLL   78 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHH-HHHCCSTTTSHCH---HHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHH
Confidence            4667788888899999999 8999999999998   99999999999999999999999999999999999999999777


Q ss_pred             HHhcchHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHh
Q 008137          114 MAIAPQPWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFTKAPGTWRWMLGVA  193 (576)
Q Consensus       114 ~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~Wr~~f~v~  193 (576)
                      ..++++++.+++.|++.|++.+...+...+++.|++|+++|++++++.+....+|.++++.+++.+.+..+ ||+.|++.
T Consensus        79 ~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~-~~~~~~~~  157 (352)
T PF07690_consen   79 LAFASNFWLLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFG-WRWAFLIS  157 (352)
T ss_dssp             HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCH-HCCHHHHH
T ss_pred             hhhhhhHHHHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhccc-cccccccc
Confidence            77778888999999999999999999999999999999999999999999999999999999999987666 99999999


Q ss_pred             HHHHHHHHHH-HhhccCChhHHhhcCCHHHHHHHHHHhCCchhhhHHHHHHHHHHHhhhhhhcccchhhHHHhhhhcccc
Q 008137          194 GLPAVVQFGL-MMMLPESPRWLYRQNKVDEARAILEKIYPADQVEEEVNLLKQSVENEKAEEGLIGKDMISRLKGAFGNK  272 (576)
Q Consensus       194 ~~~~~~~~~~-~~~l~esp~~l~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (576)
                      +++.++..++ .++++++++....+.+.++.+                          +..++     ..+.++...+++
T Consensus       158 ~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~--------------------------~~~~~-----~~~~~~~~~~~~  206 (352)
T PF07690_consen  158 AILSLIAAILFILFLPEPPPPRERESPKESES--------------------------KKPKP-----LKPGFKSLFKNP  206 (352)
T ss_dssp             HHHHHHHHHHHHCCC---STTTT--SSTTTT----------------------------HHHC-----CCH-CTHHHHHH
T ss_pred             cchhhhhhhhHhhhhhhccccccccccccccc--------------------------ccccc-----cccccccccccc
Confidence            9998887765 344554443221111111000                          00000     001123333333


Q ss_pred             hhhhhhHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcCCc-hhHHHHHHHHHhHHHHHHHHHHHHhhcccCChHHHHHHHH
Q 008137          273 IVRRGLYAGVTVQVAQQFVGINTVMYYSPTIVQFAGFAS-KSTALALSLVTSGLNALGSIVSMAFVDKYGRRRLMIVSMF  351 (576)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ig~~~~g~l~dk~grr~~~~~~~~  351 (576)
                      ..+     ......+...........+.|.|+++..+.+ ....+.......+..+++.++.+++.||+++|+.......
T Consensus       207 ~~~-----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  281 (352)
T PF07690_consen  207 VLW-----ILLIAFFLFFFVFSGFSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRRRRLLIAIL  281 (352)
T ss_dssp             CCH-----HHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             hhh-----hhhhhhhHHHHHHHHhhcccchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence            332     2222233333345567788888844443335 5777777788888889999999999999999887777666


Q ss_pred             HHHHHHHHHHHHHHHhhhcCCCccccccccCCCCCCCCcccccCCCCcccccccccccccccCCCCCCCCCCcccccccc
Q 008137          352 GLSSCLVALAVVFFQAAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAHKGNEYLPGACLIDEKS  431 (576)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  431 (576)
                      ...++.+.+.......                                                                
T Consensus       282 ~~~~~~~~~~~~~~~~----------------------------------------------------------------  297 (352)
T PF07690_consen  282 LLILGALGLLLLPFSS----------------------------------------------------------------  297 (352)
T ss_dssp             HHHHHHHHHCCSHHHC----------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHhh----------------------------------------------------------------
Confidence            6666655554433210                                                                


Q ss_pred             cccccccccccccccCCCCcchhHHHHHHHHHHHHhcCCcccccchhccccccccccccchhHHHHHHHHHHHHHH
Q 008137          432 TDTLCSDEHRTYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEIYPLRYRGVGGGIAAVSNWTSNLIVS  507 (576)
Q Consensus       432 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~g~~~~~  507 (576)
                                          ..+.......+.+.+.+ ...+....+..|..|++.||++.|+.+....+++.++|
T Consensus       298 --------------------~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~igP  352 (352)
T PF07690_consen  298 --------------------SPVWLIIALFLIGFGFG-IVFPILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIGP  352 (352)
T ss_dssp             --------------------HHHHHHHHHHHHHHHHH-HHCHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             --------------------hHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence                                01222333333334333 23456668889999999999999999999999999887

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>PRK11043 putative transporter; Provisional

Probab=99.97  E-value=6.7e-27  Score=248.61  Aligned_cols=351  Identities=16%  Similarity=0.108  Sum_probs=254.0

Q ss_pred             HHHHHHHhhhhhhhhHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHH
Q 008137           33 SAGIGGLLFGYDTGVISGALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFIGAI  112 (576)
Q Consensus        33 ~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~  112 (576)
                      .+.+...+..+....+.|.+|.+.++++.++.+.   +++.+++.++..++++++|+++||+|||+.+..+.++..++.+
T Consensus        10 ~~~~~~~~~~~~~~~~~p~~~~i~~~~~~s~~~~---g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~   86 (401)
T PRK11043         10 YLAGLSMLGFLATDMYLPAFKAIQADLQTSASAV---SASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSL   86 (401)
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHCCCHHHH---HHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHH
Confidence            3333345556677888899999999999998888   9999999999999999999999999999999999999999999


Q ss_pred             HHHhcchHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHH
Q 008137          113 IMAIAPQPWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFTKAPGTWRWMLGV  192 (576)
Q Consensus       113 ~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~Wr~~f~v  192 (576)
                      +++++++++.+++.|+++|++.+...+...+++.|++|+++|++..+.......+|..++|.+++.+.+..+ ||+.|++
T Consensus        87 ~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g-~~~~~~~  165 (401)
T PRK11043         87 GMLWVESAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFG-WQAIFAT  165 (401)
T ss_pred             HHHHhcCHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-hHHHHHH
Confidence            999999999999999999999998888888999999999999999999999999999999999999988776 9999999


Q ss_pred             hHHHHHHHHHHHhhccCChhHHhhcCCHHHHHHHHHHhCCchhhhHHHHHHHHHHHhhhhhhcccchhhHHHhhhhcccc
Q 008137          193 AGLPAVVQFGLMMMLPESPRWLYRQNKVDEARAILEKIYPADQVEEEVNLLKQSVENEKAEEGLIGKDMISRLKGAFGNK  272 (576)
Q Consensus       193 ~~~~~~~~~~~~~~l~esp~~l~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (576)
                      .+++.++..+..++++|+++.   + +.++.                                      ..++++.++++
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~---~-~~~~~--------------------------------------~~~~~~~~~~~  203 (401)
T PRK11043        166 LFAITLLLILPTLRLKPSKKA---R-KQSQD--------------------------------------ALTFKQLLKSK  203 (401)
T ss_pred             HHHHHHHHHHHHHHcCCCCCc---c-ccchH--------------------------------------HHHHHHHHcCh
Confidence            888887776666566655321   0 00000                                      02233444444


Q ss_pred             hhhhhhHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcCCchhHHHHHHHHHhHHHHHHHHHHHHhhcccCChHHHHHHHHH
Q 008137          273 IVRRGLYAGVTVQVAQQFVGINTVMYYSPTIVQFAGFASKSTALALSLVTSGLNALGSIVSMAFVDKYGRRRLMIVSMFG  352 (576)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dk~grr~~~~~~~~~  352 (576)
                      ..+...+..     ............+.|.++++.+. +....+.......++.+++.++.+++.||+++|+........
T Consensus       204 ~~~~~~~~~-----~~~~~~~~~~~~~~p~~~~~~g~-s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~~~~~~~~~~~  277 (401)
T PRK11043        204 TYLGNVLIF-----AACSAAFFAWLTGSPFILEQMGY-SPADIGLSYVPQTIAFLVGGYGCRAALQKWGGEQLLPWLLVL  277 (401)
T ss_pred             hHHHHHHHH-----HHHHHHHHHHHHHhHHHHHHcCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHH
Confidence            333222111     11122234455667888887666 666677766677777888999999999999998877665555


Q ss_pred             HHHHHHHHHHHHHHhhhcCCCccccccccCCCCCCCCcccccCCCCcccccccccccccccCCCCCCCCCCccccccccc
Q 008137          353 LSSCLVALAVVFFQAAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAHKGNEYLPGACLIDEKST  432 (576)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  432 (576)
                      ..++.+.+........                                                                
T Consensus       278 ~~~~~~~~~~~~~~~~----------------------------------------------------------------  293 (401)
T PRK11043        278 FAVSVIAIWLASLLSH----------------------------------------------------------------  293 (401)
T ss_pred             HHHHHHHHHHHHHhcc----------------------------------------------------------------
Confidence            5555443332211000                                                                


Q ss_pred             ccccccccccccccCCCCcchhHHHHHHHHHHHHhcCCcccccchhccccccccccccchhHHHHHHHHHHHHHHHHHHH
Q 008137          433 DTLCSDEHRTYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEIYPLRYRGVGGGIAAVSNWTSNLIVSLTFLT  512 (576)
Q Consensus       433 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~g~~~~~~~~~~  512 (576)
                                        +..+..+....+...+.+ ...+.......|..| +.+|++.|+.+..+..++..++.+.+.
T Consensus       294 ------------------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~~~~~~~~~~g~  353 (401)
T PRK11043        294 ------------------PSLVPLLIPFCVMAAANG-AIYPIVVAQALRPFP-QATGKAAALQNTLQLGLCFLASLLVSA  353 (401)
T ss_pred             ------------------CcHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhCc-ccChHHHHHHHHHHHHHHHHHHHHHHH
Confidence                              001222222333333333 233444445556665 579999999999999899999999998


Q ss_pred             HHHhhcc
Q 008137          513 LTEALGS  519 (576)
Q Consensus       513 l~~~~g~  519 (576)
                      +.+....
T Consensus       354 l~~~~~~  360 (401)
T PRK11043        354 LISTPLL  360 (401)
T ss_pred             ccCCChh
Confidence            8775433

>PRK10133 L-fucose transporter; Provisional

Probab=99.97  E-value=3.4e-27  Score=253.81  Aligned_cols=373  Identities=11%  Similarity=0.021  Sum_probs=259.4

Q ss_pred             hHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHH
Q 008137           26 YIMKLALSAGIGGLLFGYDTGVISGALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADV  105 (576)
Q Consensus        26 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~  105 (576)
                      .....+..+++..++.++++...++..|.++++++.++.+.   |++.+.+.+++.+++++.|++.||+|||+++..+.+
T Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~s~~~~---gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~   99 (438)
T PRK10133         23 SYIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQA---GLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLF   99 (438)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHH
Confidence            34455566667778889999999999999999999998888   999999999999999999999999999999999999


Q ss_pred             HHHHHHHHH---HhcchHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhcC-
Q 008137          106 LFFIGAIIM---AIAPQPWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFTK-  181 (576)
Q Consensus       106 ~~~i~~~~~---~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~-  181 (576)
                      +++++++++   +++++++.++++|+++|+|.|...+...+++.|+.|+++|.+.++..+....+|..+++.++..+.. 
T Consensus       100 ~~~~~~~l~~~~~~a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~~~  179 (438)
T PRK10133        100 LYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILS  179 (438)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            999999875   5689999999999999999999999999999998888777778999999999999999998875431 


Q ss_pred             C-----------------C-------chhHHHHHHhHH-HHHHHHHH-HhhccCChhHHhhcCCHHHHHHHHHHhCCchh
Q 008137          182 A-----------------P-------GTWRWMLGVAGL-PAVVQFGL-MMMLPESPRWLYRQNKVDEARAILEKIYPADQ  235 (576)
Q Consensus       182 ~-----------------~-------~~Wr~~f~v~~~-~~~~~~~~-~~~l~esp~~l~~~~~~~~~~~~l~~i~~~~~  235 (576)
                      .                 .       .+||++|+.... ..++.++. ...+||.+..   + +.++..           
T Consensus       180 ~~~~~~~~~~~~l~~~~~~~w~~~~~~~w~~~f~~~~~v~~~~~~~~~~~~~p~~~~~---~-~~~~~~-----------  244 (438)
T PRK10133        180 NVPHQSQDVLDKMTPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSD---N-HSDAKQ-----------  244 (438)
T ss_pred             CCcccchhhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcc---c-cccccc-----------
Confidence            0                 0       136777765333 33332222 2234542210   0 000000           


Q ss_pred             hhHHHHHHHHHHHhhhhhhcccchhhHHHhhhhcccchhhhhhHHHHHHHHHHHHHhhHHHHhhhHHH-HHhhcCCchhH
Q 008137          236 VEEEVNLLKQSVENEKAEEGLIGKDMISRLKGAFGNKIVRRGLYAGVTVQVAQQFVGINTVMYYSPTI-VQFAGFASKST  314 (576)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  314 (576)
                                             .+..++.+++++++.++...+..     +...........|.+.+ +++..+.+...
T Consensus       245 -----------------------~~~~~~~~~ll~~~~~~~~~l~~-----~~~~~~~~~~~~~~~~~l~~~~~g~s~~~  296 (438)
T PRK10133        245 -----------------------GSFSASLSRLARIRHWRWAVLAQ-----FCYVGAQTACWSYLIRYAVEEIPGMTAGF  296 (438)
T ss_pred             -----------------------cchhhhHHHHHhCchHHHHHHHH-----HHHHHHHHHHHHHHHHHHhhhcCCCCHHH
Confidence                                   00012234555555544322111     11222233344455656 45555558888


Q ss_pred             HHHHHHHHhHHHHHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccccccCCCCCCCCccccc
Q 008137          315 ALALSLVTSGLNALGSIVSMAFVDKYGRRRLMIVSMFGLSSCLVALAVVFFQAAIHAPTVSQIESSHFGGNNTCPAYITD  394 (576)
Q Consensus       315 ~~~~~~~~~~~~~ig~~~~g~l~dk~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  394 (576)
                      ++.......++.++|+++++++.||+++|+++..+.++..+.+.+.....                              
T Consensus       297 ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~------------------------------  346 (438)
T PRK10133        297 AANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAG------------------------------  346 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcC------------------------------
Confidence            88888999999999999999999999999988877666554443322210                              


Q ss_pred             CCCCcccccccccccccccCCCCCCCCCCcccccccccccccccccccccccCCCCcchhHHHHHHHHHHHHhcCCcccc
Q 008137          395 GNAKSWNCMDCLKAKCGFCAHKGNEYLPGACLIDEKSTDTLCSDEHRTYFISGCPSSFGWLAVVFLGAYIITYSPGMGTA  474 (576)
Q Consensus       395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~  474 (576)
                                                                             .   ...+..+.+.+++.+ ...|.
T Consensus       347 -------------------------------------------------------~---~~~~~~~~l~glg~~-~i~P~  367 (438)
T PRK10133        347 -------------------------------------------------------G---HVGLIALTLCSAFMS-IQYPT  367 (438)
T ss_pred             -------------------------------------------------------C---hHHHHHHHHHHHHHH-HHHHH
Confidence                                                                   0   111223333333333 34456


Q ss_pred             cchhccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHhhc-cchhhHHHHHHHHHHHH
Q 008137          475 PWIVNSEIYPLRYRGVGGGIAAVSNWTSNLIVSLTFLTLTEALG-SAGTFLLFAGFSLLGLV  535 (576)
Q Consensus       475 ~~~~~~e~~p~~~rg~~~g~~~~~~~~g~~~~~~~~~~l~~~~g-~~~~~~~~~~~~~i~~~  535 (576)
                      .++...|..|+ ..+++.++..+ ...|+.++|.+.|.+.|..| .+..|++..+..+....
T Consensus       368 ~~s~a~~~~~~-~~~~as~l~~~-~~~g~~~~~~i~G~l~~~~g~~~~~~~v~~~~~~~~~~  427 (438)
T PRK10133        368 IFSLGIKNLGQ-DTKYGSSFIVM-TIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFI  427 (438)
T ss_pred             HHHHHHcccch-hhccchhHHhH-HhccchHHHHHHHHHHHhccchHHHHHHHHHHHHHHHH
Confidence            66777777765 46788888864 55788899999999999887 56666655444444333

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=99.96  E-value=8.6e-30  Score=260.97  Aligned_cols=280  Identities=19%  Similarity=0.230  Sum_probs=222.2

Q ss_pred             chhhHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHH
Q 008137           23 TTPYIMKLALSAGIGGLLFGYDTGVISGALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLG  102 (576)
Q Consensus        23 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~  102 (576)
                      ..+..++.+.++++..++++.|++.+..+++.+++.||.+++..   |++.+++.+++.+.++++|+++|||.||+++.+
T Consensus        27 ~~~~~~~~l~il~~vnlmny~Dr~~iagv~~~v~~~fni~~s~~---Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~v  103 (493)
T KOG1330|consen   27 SMKSPTLTLVILCLVNLMNYADRYTIAGVLKEVQTYFNISDSEL---GLLQTVFIVVFMIASPLFGYLADRYNRKRVIAV  103 (493)
T ss_pred             ccccchHHHHHHHHHHHHHHhhhhhhhhhhHHHHHhcCCCchhc---cchhHHHHHHHHHHHHHHHHHHhhcCcceEEee
Confidence            44566778889999999999999999999999999999999999   999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhcchHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 008137          103 ADVLFFIGAIIMAIAPQPWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFTKA  182 (576)
Q Consensus       103 ~~~~~~i~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~  182 (576)
                      |+.+|.++.++++++..+|++.++|.+.|+|++...|.++++++|.+|..+|++.+++++.+..+|..+|++++..+...
T Consensus       104 G~~iW~~Av~~~~fs~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~  183 (493)
T KOG1330|consen  104 GIFIWTLAVFASGFSNHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASL  183 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             CchhHHHHHHhHHHHHHHHHHHh-hccCChhHHhhcCCHHHHHHHHHHhCCchhhhHHHHHHHHHHHhhhhhhcccchhh
Q 008137          183 PGTWRWMLGVAGLPAVVQFGLMM-MLPESPRWLYRQNKVDEARAILEKIYPADQVEEEVNLLKQSVENEKAEEGLIGKDM  261 (576)
Q Consensus       183 ~~~Wr~~f~v~~~~~~~~~~~~~-~l~esp~~l~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (576)
                      .+.|||.|++.++++++..++.+ +.+|.+|...     ++...                         .........+.
T Consensus       184 ~~~Wr~af~~~avl~vi~~~L~~~f~~eP~rga~-----~~~~~-------------------------~~~~~~~~ts~  233 (493)
T KOG1330|consen  184 TFWWRWAFRGSAVLGVIVGLLVFLFVREPERGAR-----DEVDG-------------------------ENKMVKPFTSV  233 (493)
T ss_pred             ccceEEEEEeehHHHHHHHHHHHhhccCcccccc-----ccccc-------------------------CCcCCCCccch
Confidence            77799999999999999887754 4555433100     00000                         00000111122


Q ss_pred             HHHhhhhcccchhhhhhHHHHHHHHHHHHHhhHHHHhhhHHHHHh---hcCCchhHHHHHHHHHhHHHHHHHHHHHHhhc
Q 008137          262 ISRLKGAFGNKIVRRGLYAGVTVQVAQQFVGINTVMYYSPTIVQF---AGFASKSTALALSLVTSGLNALGSIVSMAFVD  338 (576)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~d  338 (576)
                      +++.+.+.+++...-..+......+.     ...+.+|.|.+...   ..+.+..+...+..+...++.+|.+++|.++|
T Consensus       234 ~kDl~~l~~~~v~v~~sl~~~a~~fv-----~Gs~sww~p~~~~~~~~~~~~~~~~~~ifg~vt~~~G~lGvl~Ggiisd  308 (493)
T KOG1330|consen  234 WKDLKVLAKIKVFVLSSLGIIAAQFV-----IGSLSWWAPAFIYYSYELIGFDHNATLIFGGVTCAGGSLGVLFGGIISD  308 (493)
T ss_pred             HHHHHHHHccCceeeehHHHHHHHHh-----ccccchhhhhHHHHHHHHhCCccccchhhhhHHHhhchhhheehHHHHH
Confidence            34555555555544443333333333     45555566665442   12224456667778888899999999999999


Q ss_pred             cc
Q 008137          339 KY  340 (576)
Q Consensus       339 k~  340 (576)
                      |+
T Consensus       309 ~~  310 (493)
T KOG1330|consen  309 KL  310 (493)
T ss_pred             HH
Confidence            94

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=99.96  E-value=1e-26  Score=246.89  Aligned_cols=371  Identities=14%  Similarity=0.042  Sum_probs=259.8

Q ss_pred             HHHHHHhhhhhhhhHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHH
Q 008137           34 AGIGGLLFGYDTGVISGALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFIGAII  113 (576)
Q Consensus        34 ~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~  113 (576)
                      +.++.++..+....+....+.+.++++.+..+.   +++.+.+.+++.++++++|+++||+|||++++++.+++++++++
T Consensus         8 l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~---~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~   84 (393)
T PRK11195          8 IMAAQFFSALADNALLFAAIALLKELHYPDWSQ---PLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLL   84 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHH---HHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHH
Confidence            456667777755556666677788998877766   99999999999999999999999999999999999999999998


Q ss_pred             HHhcchHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHh
Q 008137          114 MAIAPQPWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFTKAPGTWRWMLGVA  193 (576)
Q Consensus       114 ~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~Wr~~f~v~  193 (576)
                      ++++.++   ++.|+++|++.+...|...+++.|++|+++|+++.++.+....+|.++||.+++.+.+.  .|+..+.+.
T Consensus        85 ~~~~~~~---~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~--~~~~~~~i~  159 (393)
T PRK11195         85 MLFGIHP---LLAYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADP--HAEAALAVC  159 (393)
T ss_pred             HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHH
Confidence            8887664   78899999999999999999999999999999999999999999999999999999875  378787777


Q ss_pred             HHHHHHHHHHHhhccCChhHHhhcCCHHHHHHHHHHhCCchhhhHHHHHHHHHHHhhhhhhcccchhhHHHhhhhcccch
Q 008137          194 GLPAVVQFGLMMMLPESPRWLYRQNKVDEARAILEKIYPADQVEEEVNLLKQSVENEKAEEGLIGKDMISRLKGAFGNKI  273 (576)
Q Consensus       194 ~~~~~~~~~~~~~l~esp~~l~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (576)
                      +...++..+..+.+||+|++...++ .++. ..             ..                  +.....+..++++.
T Consensus       160 ~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~-~~-------------~~------------------~~~~~~~~l~~~~~  206 (393)
T PRK11195        160 ALIYLLAALFNLFIPRLGARRPGQS-WNPI-AL-------------LR------------------DFFHACRVLWRDKL  206 (393)
T ss_pred             HHHHHHHHHHHhcCCCCcccccccC-CCHH-HH-------------HH------------------HHHHHHHHHHhCch
Confidence            6665555555667888653211110 0000 00             00                  00012234444544


Q ss_pred             hhhhhHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcCCchhHHHHHHHHHhHHHHHHHHHHHHhhcccCChHHHHHHHHHH
Q 008137          274 VRRGLYAGVTVQVAQQFVGINTVMYYSPTIVQFAGFASKSTALALSLVTSGLNALGSIVSMAFVDKYGRRRLMIVSMFGL  353 (576)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dk~grr~~~~~~~~~~  353 (576)
                      .+...+....     .+.......+..|.++++..+.+..+.+.+.....++.++++++.+++.||.++++.+..+.. .
T Consensus       207 ~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~~-~  280 (393)
T PRK11195        207 GRFSLAGTTL-----FWGAGATLRFLVLAWAPVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLETVLRVLPAGIL-M  280 (393)
T ss_pred             hHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHHH-H
Confidence            4332221111     112223344455666666656678888898899999999999999999999998887766643 3


Q ss_pred             HHHHHHHHHHHHHhhhcCCCccccccccCCCCCCCCcccccCCCCcccccccccccccccCCCCCCCCCCcccccccccc
Q 008137          354 SSCLVALAVVFFQAAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAHKGNEYLPGACLIDEKSTD  433 (576)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  433 (576)
                      .+...++.....                                                                    
T Consensus       281 ~~~~~~~~~~~~--------------------------------------------------------------------  292 (393)
T PRK11195        281 GLVVLLMALQHS--------------------------------------------------------------------  292 (393)
T ss_pred             HHHHHHHHHHhH--------------------------------------------------------------------
Confidence            332222221110                                                                    


Q ss_pred             cccccccccccccCCCCcchhHHHHHHHHHHHHhcCCcccccchhccccccccc-cccchhHHHHHHHHHHHHHHHHHHH
Q 008137          434 TLCSDEHRTYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEIYPLRY-RGVGGGIAAVSNWTSNLIVSLTFLT  512 (576)
Q Consensus       434 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~-rg~~~g~~~~~~~~g~~~~~~~~~~  512 (576)
                                         .+..++...+.+.+.+....+ ..+...+..|++. +|++.++.+...+++..++..+.+.
T Consensus       293 -------------------~~~~~~~~~~~G~~~g~~~~~-~~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~  352 (393)
T PRK11195        293 -------------------LLPAYPLLILIGALGGFFVVP-MNALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSL  352 (393)
T ss_pred             -------------------HHHHHHHHHHHHHhhhhhhhh-HHHHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHH
Confidence                               133333333444444333333 3455567655554 7999999999999999999998885


Q ss_pred             HHHhhccchhhHHHHHHHHHHHHHHHhh
Q 008137          513 LTEALGSAGTFLLFAGFSLLGLVAIYLL  540 (576)
Q Consensus       513 l~~~~g~~~~~~~~~~~~~i~~~~~~~~  540 (576)
                      + +..|.+..+++.+...++++.+.+.+
T Consensus       353 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~  379 (393)
T PRK11195        353 L-VKLGVPVVAVIVGFGLLVALAMALLW  379 (393)
T ss_pred             H-HHcCCCHHHHHHHHHHHHHHHHHHHH
Confidence            4 67788877777666666665555444

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=99.96  E-value=9.6e-28  Score=244.39  Aligned_cols=385  Identities=19%  Similarity=0.191  Sum_probs=300.6

Q ss_pred             hhHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHH
Q 008137           25 PYIMKLALSAGIGGLLFGYDTGVISGALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGAD  104 (576)
Q Consensus        25 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~  104 (576)
                      +..++.+.+..+...+......+++++.+.+.++++.+++|.   +++.++..+...+..++.|.+.||||.|++..++.
T Consensus        10 ~~~~~~L~~S~~af~v~F~VW~l~s~l~~~i~~~~~LS~~q~---~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~   86 (417)
T COG2223          10 RIARRNLWLSTLAFDVGFMVWTLFSPLGVFIKSDFGLSEGQK---GLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSM   86 (417)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCHHHH---HHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHH
Confidence            344556666667777788888999999999999999999999   99999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcchH---HHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 008137          105 VLFFIGAIIMAIAPQP---WVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFTK  181 (576)
Q Consensus       105 ~~~~i~~~~~~~~~~~---~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~  181 (576)
                      ++..+-++..+++.++   +++++.+++.|++.| .+..+..++++|+|++++|.++|++. ..++|..+...++..+..
T Consensus        87 ~l~~IP~~~~~~a~~~~~~~~ll~~gll~G~~Ga-sFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~  164 (417)
T COG2223          87 LLLLIPCLGLAFAVTYPSTWQLLVIGLLLGLAGA-SFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAV  164 (417)
T ss_pred             HHHHHHHHHHHHHccCCchHHHHHHHHHHhcccc-eehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHH
Confidence            9999999999998654   499999999999655 78889999999999999999999999 888888887777777766


Q ss_pred             CCc--hhHHHHHHhHHHHHHHHHH-HhhccCChhHHhhcCCHHHHHHHHHHhCCchhhhHHHHHHHHHHHhhhhhhcccc
Q 008137          182 APG--TWRWMLGVAGLPAVVQFGL-MMMLPESPRWLYRQNKVDEARAILEKIYPADQVEEEVNLLKQSVENEKAEEGLIG  258 (576)
Q Consensus       182 ~~~--~Wr~~f~v~~~~~~~~~~~-~~~l~esp~~l~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (576)
                      ..+  .||....+..+..++..+. ++...|.|......++...                                    
T Consensus       165 ~~g~~~w~~~~~i~~~~l~v~~v~~~~~~~d~p~~r~~~~~~~~------------------------------------  208 (417)
T COG2223         165 AFGFLAWRNVAGIYVVALAIAAVLAWLGMNDVPEHRASVKPQLP------------------------------------  208 (417)
T ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhccccccch------------------------------------
Confidence            554  3999988888877775554 6677777653211111000                                    


Q ss_pred             hhhHHHhhhhcccchhhhhhHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcCCchhHHHHHHHHHhHHHHHHHHHHHHhhc
Q 008137          259 KDMISRLKGAFGNKIVRRGLYAGVTVQVAQQFVGINTVMYYSPTIVQFAGFASKSTALALSLVTSGLNALGSIVSMAFVD  338 (576)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~d  338 (576)
                          ...+..++++.     .+.+.+.+...+.++..+..+.|.|+++....++.+++.+.......+.+.++++|+++|
T Consensus       209 ----~~~~~v~~~~~-----~W~lsllY~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsD  279 (417)
T COG2223         209 ----AQLKAVFSNKD-----TWLLSLLYFATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSD  279 (417)
T ss_pred             ----hHHHHHhcCcc-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhh
Confidence                12233333333     333555666677778888899999999887778889988888888889999999999999


Q ss_pred             ccCChHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccccccCCCCCCCCcccccCCCCcccccccccccccccCCCCC
Q 008137          339 KYGRRRLMIVSMFGLSSCLVALAVVFFQAAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAHKGN  418 (576)
Q Consensus       339 k~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  418 (576)
                      |+|.++++...+..++++..++.+......+.                                                
T Consensus       280 R~Gg~rv~~~~f~~~~~~~~~l~~~~~~~~~~------------------------------------------------  311 (417)
T COG2223         280 RIGGRRVTLAVFVGMALAAALLSLFLTGFGHG------------------------------------------------  311 (417)
T ss_pred             hccchhHHHHHHHHHHHHHHHHHccccccccC------------------------------------------------
Confidence            99999999998888888888777653321100                                                


Q ss_pred             CCCCCcccccccccccccccccccccccCCCCcchhHHHHHHHHHHHHhcCCcccccchhccccccccccccchhHHHHH
Q 008137          419 EYLPGACLIDEKSTDTLCSDEHRTYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEIYPLRYRGVGGGIAAVS  498 (576)
Q Consensus       419 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~~~g~~~~~  498 (576)
                                                      ...+..+..+.....+.+.+.+. .+-++..++|. +.|.+.|+....
T Consensus       312 --------------------------------~~~~~~~~~~l~l~~~~G~GnGs-vfk~Ip~if~~-~~G~v~G~vga~  357 (417)
T COG2223         312 --------------------------------GSFVVFVAVFLALFVFAGLGNGS-VFKMIPVIFPK-ETGAVTGIVGAI  357 (417)
T ss_pred             --------------------------------cchHHHHHHHHHHHHHhccCcch-heeechHHHHh-hhhHHHHHHHHh
Confidence                                            00133344444444555555443 44566777764 668999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhc-cchhhHHHHHHHHHHHHHHHhhc
Q 008137          499 NWTSNLIVSLTFLTLTEALG-SAGTFLLFAGFSLLGLVAIYLLV  541 (576)
Q Consensus       499 ~~~g~~~~~~~~~~l~~~~g-~~~~~~~~~~~~~i~~~~~~~~~  541 (576)
                      +.+|++..|...+...+..| +...|+++..+.+++.++.+...
T Consensus       358 G~lGGf~lp~~~g~~~~~tg~~~~~f~~~~~~~~~a~v~~~~~y  401 (417)
T COG2223         358 GGLGGFFLPLAFGVSLDLTGSYTGAFMLLLAFYLVALVLTWALY  401 (417)
T ss_pred             ccccccchhHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999998 66788888888888888776644

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=99.96  E-value=1.3e-26  Score=244.00  Aligned_cols=269  Identities=19%  Similarity=0.208  Sum_probs=209.0

Q ss_pred             hhhhhHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHhcchHHH
Q 008137           43 YDTGVISGALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFIGAIIMAIAPQPWV  122 (576)
Q Consensus        43 ~~~~~~~~~~~~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~  122 (576)
                      +....+.|.+|.+.+++|.+..+.   +++.+++.++..++++++|+++||+|||+++..+.++.+++.+++.++++++.
T Consensus         5 ~~~~~~~p~~~~~~~~~~~s~~~~---~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~   81 (377)
T PRK11102          5 LAIDMYLPALPVIAADFGVSAGSV---QMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQTIDQ   81 (377)
T ss_pred             hHHHHHhccHHHHHHHhCCCHHHH---HHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHccHHH
Confidence            445677799999999999998888   99999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHhHHHHHHHHH
Q 008137          123 IILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFTKAPGTWRWMLGVAGLPAVVQFG  202 (576)
Q Consensus       123 l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~Wr~~f~v~~~~~~~~~~  202 (576)
                      +++.|++.|++.+...+...+++.|++|+++|++++++.+....+|..+++.+++.+.+..+ ||+.|++.+++.++..+
T Consensus        82 ~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~  160 (377)
T PRK11102         82 LIYMRFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFS-WHAIFWVLALAAILAAA  160 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-hHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999888766 99999998888777655


Q ss_pred             H-HhhccCChhHHhhcCCHHHHHHHHHHhCCchhhhHHHHHHHHHHHhhhhhhcccchhhHHHhhhhcccchhhhhhHHH
Q 008137          203 L-MMMLPESPRWLYRQNKVDEARAILEKIYPADQVEEEVNLLKQSVENEKAEEGLIGKDMISRLKGAFGNKIVRRGLYAG  281 (576)
Q Consensus       203 ~-~~~l~esp~~l~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (576)
                      . .+.+||+++... +++. +.                                   ++..++.++.++++..+.     
T Consensus       161 ~~~~~~~~~~~~~~-~~~~-~~-----------------------------------~~~~~~~~~~~~~~~~~~-----  198 (377)
T PRK11102        161 LVFFFIPETLPKER-RQPF-HL-----------------------------------RTTIRNFASLFRHKRVLG-----  198 (377)
T ss_pred             HHHHhCCccCcccc-cCCC-Ch-----------------------------------HHHHHHHHHHHcChHHHH-----
Confidence            4 455676542100 0000 00                                   000022333444443222     


Q ss_pred             HHHHHHHHHHhhHHHHhhhHHHHHhhcCCchhHHHHHHHHHhHHHHHHHHHHHHhhcccCChHHHHHHHHHHHHHH
Q 008137          282 VTVQVAQQFVGINTVMYYSPTIVQFAGFASKSTALALSLVTSGLNALGSIVSMAFVDKYGRRRLMIVSMFGLSSCL  357 (576)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dk~grr~~~~~~~~~~~~~~  357 (576)
                      ........+.+......+.|.++.+..+.+..+.+.......++.+++.++.+++.||+|||+.+..+..+..+..
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~  274 (377)
T PRK11102        199 YMLASGFSFAGMFSFLTAGPFVYIELNGVSPQNFGYYFALNIVFLFVMTIINSRFVRRVGALNMLRFGLWIQFIMG  274 (377)
T ss_pred             HHHHHHHHHHHHHHHHHcCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHH
Confidence            2222223333444555566666655434467778888888888999999999999999999998887776544443

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.96  E-value=3.8e-26  Score=249.17  Aligned_cols=375  Identities=13%  Similarity=0.074  Sum_probs=257.9

Q ss_pred             HHHHHHHhhhhhhhhHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhcc-----CchHH-HHHHHHH
Q 008137           33 SAGIGGLLFGYDTGVISGALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRF-----GRKIS-LLGADVL  106 (576)
Q Consensus        33 ~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~-----Grr~~-~~~~~~~  106 (576)
                      .+.+..+..++.....++.+|.+.++.|.+..+.   +.. +.....+ ++.+++|+++||+     |||+. ++++.+.
T Consensus        16 ~~~~l~~~~gl~~~~~~~~l~~~l~~~g~~~~~i---g~~-~~~~~~~-~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i~   90 (491)
T PRK11010         16 ILLILGFASGLPLALTSGTLQAWMTVENIDLKTI---GFF-SLVGQAY-VFKFLWSPLMDRYTPPFLGRRRGWLLATQLL   90 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHH---HHH-HHHHHHH-HHHHHHHHHHHcccccCCCCchHHHHHHHHH
Confidence            3444455677788888899999999988877777   665 3333333 6889999999999     99885 6678777


Q ss_pred             HHHHHHHHHhc---chHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhcC-C
Q 008137          107 FFIGAIIMAIA---PQPWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFTK-A  182 (576)
Q Consensus       107 ~~i~~~~~~~~---~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~-~  182 (576)
                      .+++.+.+++.   ++++.+.+.|++.|++.+...+...+++.|++|+++|+++.++...+..+|.++++.+...+.+ .
T Consensus        91 ~~~~~~~~a~~~~~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~~l~~~~  170 (491)
T PRK11010         91 LLVAIAAMGFLEPGTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLALWLADRY  170 (491)
T ss_pred             HHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            87887777775   4788899999999999999999999999999999999999999999999999999999999888 3


Q ss_pred             CchhHHHHHHhHHHHHHHHHHHhhccCChhHHhhcCCHHHHHHHHHHhCCchhhhHHHHHHHHHHHhhhhhhcccchhhH
Q 008137          183 PGTWRWMLGVAGLPAVVQFGLMMMLPESPRWLYRQNKVDEARAILEKIYPADQVEEEVNLLKQSVENEKAEEGLIGKDMI  262 (576)
Q Consensus       183 ~~~Wr~~f~v~~~~~~~~~~~~~~l~esp~~l~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (576)
                      .+ ||..|++.+++.++..+..+++||+++..  +.+ ++.+             .                     ...
T Consensus       171 ~G-Wr~~f~i~a~l~ll~~l~~~~~~e~~~~~--~~~-~~~~-------------~---------------------~~~  212 (491)
T PRK11010        171 LG-WQGMYWLMAALLIPCIIATLLAPEPTDTI--PVP-KTLE-------------Q---------------------AVV  212 (491)
T ss_pred             cC-HHHHHHHHHHHHHHHHHHHHhcCCCcccc--ccc-cchh-------------h---------------------hHH
Confidence            45 99999999988777766666677764311  000 0000             0                     000


Q ss_pred             HHhhhhcccchhhhhhHHHHHHHHHHHHHhhHHHHhhhHHHH-HhhcCCchhHHHHHH-HHHhHHHHHHHHHHHHhhccc
Q 008137          263 SRLKGAFGNKIVRRGLYAGVTVQVAQQFVGINTVMYYSPTIV-QFAGFASKSTALALS-LVTSGLNALGSIVSMAFVDKY  340 (576)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~ig~~~~g~l~dk~  340 (576)
                      .++++.++++..+..    ....+... ........+.+.++ ++.+. +..+.+... ....++.++|.+++|+++||+
T Consensus       213 ~~l~~~~~~~~~~~~----ll~~~l~~-~~~~~~~~~~~~~l~~~~G~-s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~  286 (491)
T PRK11010        213 APLRDFFGRNNAWLI----LLLIVLYK-LGDAFAMSLTTTFLIRGVGF-DAGEVGLVNKTLGLLATIVGALYGGILMQRL  286 (491)
T ss_pred             HHHHHHHcCcCHHHH----HHHHHHHH-HHHHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            223344444332221    11112211 22223333445554 44555 666777765 455678899999999999999


Q ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccccccCCCCCCCCcccccCCCCcccccccccccccccCCCCCCC
Q 008137          341 GRRRLMIVSMFGLSSCLVALAVVFFQAAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAHKGNEY  420 (576)
Q Consensus       341 grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  420 (576)
                      ++|+.+..+.++..++.+.+...... ..                                                   
T Consensus       287 g~~~~l~i~~~l~~l~~l~~~~l~~~-~~---------------------------------------------------  314 (491)
T PRK11010        287 SLFRALMIFGILQGVSNAGYWLLSIT-DK---------------------------------------------------  314 (491)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhc-cc---------------------------------------------------
Confidence            99887766555544444333221110 00                                                   


Q ss_pred             CCCcccccccccccccccccccccccCCCCcchhHHHHHHHHHHHHhcCCcccccchhccccccccccccchhHHHHHHH
Q 008137          421 LPGACLIDEKSTDTLCSDEHRTYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEIYPLRYRGVGGGIAAVSNW  500 (576)
Q Consensus       421 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~  500 (576)
                                                     ..+......++....++.+. +..+++..++.+++.+++..|+.+....
T Consensus       315 -------------------------------~~~~l~~~~~l~~~~~g~~~-~~~~a~~~~l~~~~~~~t~~gl~~s~~~  362 (491)
T PRK11010        315 -------------------------------NLYSMGAAVFFENLCGGMGT-AAFVALLMTLCNKSFSATQFALLSALSA  362 (491)
T ss_pred             -------------------------------cHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHcCCCCcHHHHHHHHHHHH
Confidence                                           01121222222111222122 2335677788899999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHhh
Q 008137          501 TSNLIVSLTFLTLTEALGSAGTFLLFAGFSLLGLVAIYLL  540 (576)
Q Consensus       501 ~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~  540 (576)
                      +|..+++.+.|.+.|..||...|.+.+++++++.+..++.
T Consensus       363 lg~~~~~~~~G~l~~~~G~~~~f~~~~~~~l~~l~~~~~~  402 (491)
T PRK11010        363 VGRVYVGPVAGWFVEAHGWPTFYLFSVAAAVPGLLLLLVC  402 (491)
T ss_pred             HHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999888888888888887776554

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.96  E-value=5.8e-26  Score=241.02  Aligned_cols=365  Identities=12%  Similarity=0.070  Sum_probs=242.8

Q ss_pred             HHHHhhhhhhhhHHHHHHH-HHHhhccchhhhHHHHHHHHHH-HHHHHHHHHHHHHhhhccCchHHH-HHHHHHHHHHHH
Q 008137           36 IGGLLFGYDTGVISGALLY-IKEDFRDVEKKTWLQELIVSMA-VAGAIFGAGFGGWINDRFGRKISL-LGADVLFFIGAI  112 (576)
Q Consensus        36 l~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~~~~g~i~s~~-~~~~~i~~~~~G~l~dr~Grr~~~-~~~~~~~~i~~~  112 (576)
                      ++.++..+....+.+.+|. +.++++.+..+.   |++.+.. .++..++++++|+ .||+|||+.+ +.+.++.+++..
T Consensus        22 ~~~~~~~~~~~~~~p~~~~~l~~~~~~s~~~~---g~~~~~~~~~~~~~~~~~~~~-~dr~g~r~~~~~~~~~~~~~~~~   97 (393)
T PRK15011         22 IVAFLTGIAGALQTPTLSIFLTDEVHARPAMV---GFFFTGSAVIGILVSQFLAGR-SDKRGDRKSLIVFCCLLGVLACT   97 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHH---HHHHHHHHHHHHHHHHHHHHH-HhcccchhHHHHHHHHHHHHHHH
Confidence            4456666676777777776 568899988888   9987765 4566666666666 9999999874 566677778888


Q ss_pred             HHHhcchHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchh--hHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHH
Q 008137          113 IMAIAPQPWVIILGRIFVGLGVGMASMTAPLYISEASPAKIR--GALVSANGFLITGGQFLAYLINLAFTKAPGTWRWML  190 (576)
Q Consensus       113 ~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R--~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~Wr~~f  190 (576)
                      +.+++++++.+++.+.+.|...+...|....++.|+.++++|  +...++.+.+.++|.+++|++++.+.+..+ ||+.|
T Consensus        98 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~g-w~~~f  176 (393)
T PRK15011         98 LFAWNRNYFVLLFVGVFLSSFGSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAMGFS-FTVMY  176 (393)
T ss_pred             HHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcC-hHHHH
Confidence            889999999887666555555566788888888998876655  345678889999999999999999988776 99999


Q ss_pred             HHhHHHHHHHHHH-HhhccCChhHHhhcCCHHHHHHHHHHhCCchhhhHHHHHHHHHHHhhhhhhcccchhhHHHhhhhc
Q 008137          191 GVAGLPAVVQFGL-MMMLPESPRWLYRQNKVDEARAILEKIYPADQVEEEVNLLKQSVENEKAEEGLIGKDMISRLKGAF  269 (576)
Q Consensus       191 ~v~~~~~~~~~~~-~~~l~esp~~l~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (576)
                      ++.++..++..+. ++++||.++..   ++.++                             +.         +..+   
T Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-----------------------------~~---------~~~~---  212 (393)
T PRK15011        177 LSAAVAFIVCGVMVWLFLPSMRKEL---PLATG-----------------------------TL---------EAPR---  212 (393)
T ss_pred             HHHHHHHHHHHHHHHhhcCccCCCC---ccccc-----------------------------cc---------cccc---
Confidence            9998877766555 45577764310   00000                             00         0000   


Q ss_pred             ccchhhhhhHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcCCchhHHHHHHHHHhHHHHHHHHHHHHhhcccCChHHHHHH
Q 008137          270 GNKIVRRGLYAGVTVQVAQQFVGINTVMYYSPTIVQFAGFASKSTALALSLVTSGLNALGSIVSMAFVDKYGRRRLMIVS  349 (576)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dk~grr~~~~~~  349 (576)
                      +++   +..+..+... ...+.....+..+.|.++++..+.+....+.+.....+..+++.++.|+++||++||+.+..+
T Consensus       213 ~~~---~~~~~~~~~~-~~~~~~~~~~~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~  288 (393)
T PRK15011        213 RNR---RDTLLLFVIC-TLMWGTNSLYIINMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVA  288 (393)
T ss_pred             ccc---ccHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHH
Confidence            011   1111111111 222233444556788888665444666677666666677788999999999999999987766


Q ss_pred             HHHHHHHHHHHHHHHHHhhhcCCCccccccccCCCCCCCCcccccCCCCcccccccccccccccCCCCCCCCCCcccccc
Q 008137          350 MFGLSSCLVALAVVFFQAAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAHKGNEYLPGACLIDE  429 (576)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  429 (576)
                      .....+.+..+.....                                                                
T Consensus       289 ~~~~~~~~~~~~~~~~----------------------------------------------------------------  304 (393)
T PRK15011        289 AVAGVCFYAGMLMAHS----------------------------------------------------------------  304 (393)
T ss_pred             HHHHHHHHHHHHHHhh----------------------------------------------------------------
Confidence            5544433322211100                                                                


Q ss_pred             cccccccccccccccccCCCCcchhHHHHHHHHHHHHhcCCcccccchhccccccccccccchhHHHHHHHHHHHHHHHH
Q 008137          430 KSTDTLCSDEHRTYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEIYPLRYRGVGGGIAAVSNWTSNLIVSLT  509 (576)
Q Consensus       430 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~g~~~~~~~  509 (576)
                                             .+..+....+..+.++... +....+..|.+|+ .||+++++.+...++|..++|.+
T Consensus       305 -----------------------~~~~l~~~~l~~~~~g~~~-~~~~~~~~~~~p~-~~g~~~~~~~~~~~lg~~~g~~l  359 (393)
T PRK15011        305 -----------------------PAILLGLQLLNAIYIGILG-GIGMLYFQDLMPG-QAGSATTLYTNTSRVGWIIAGSL  359 (393)
T ss_pred             -----------------------HHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCCC-CcchHHHHHHHHHHHHHHHHHHH
Confidence                                   1222222222222222111 1223556788875 58999999999999999999999


Q ss_pred             HHHHHHhhccchhhHHHHHHHHHHHHHHHhhccC
Q 008137          510 FLTLTEALGSAGTFLLFAGFSLLGLVAIYLLVPE  543 (576)
Q Consensus       510 ~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~  543 (576)
                      .|.+.+..|++..+.+.+++.+++++..++ .||
T Consensus       360 ~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~  392 (393)
T PRK15011        360 AGIVAEIWNYHAVFWFALVMIIATLFCLLR-IKD  392 (393)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHHHHHHh-hcC
Confidence            999999999988888877777777666543 454

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=99.96  E-value=9.5e-26  Score=239.19  Aligned_cols=352  Identities=15%  Similarity=0.083  Sum_probs=247.7

Q ss_pred             HHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHH
Q 008137           29 KLALSAGIGGLLFGYDTGVISGALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFF  108 (576)
Q Consensus        29 ~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~  108 (576)
                      +.+.+..+...+..+......+.+|.+.++++.+..+.   +++.+++.++..++++++|+++||+|||+++.++.++..
T Consensus         8 ~~l~~~~~~~~~~~~~~~~~~p~~~~i~~~~~~s~~~~---~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~   84 (394)
T PRK11652          8 NLLFMLVLLVAVGQMAQTIYVPAIADMARDLNVREGAV---QAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFI   84 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccHHHHHHHhCCCHHHH---HHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHH
Confidence            33444444445566777788889999999999999888   999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcchHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHH
Q 008137          109 IGAIIMAIAPQPWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFTKAPGTWRW  188 (576)
Q Consensus       109 i~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~Wr~  188 (576)
                      ++.+++.++++++.+++.|++.|++.+...+....+..|++++++|+++.+..+.+..+|..++|.+++.+.+..+ ||+
T Consensus        85 ~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g-~~~  163 (394)
T PRK11652         85 LGTLVALFAHSLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLFG-WRA  163 (394)
T ss_pred             HHHHHHHHHccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-hHH
Confidence            9999999999999999999999999998888888999999999999999999999999999999999999887766 999


Q ss_pred             HHHHhHHHHHHHHHH-HhhccCChhHHhhcCCHHHHHHHHHHhCCchhhhHHHHHHHHHHHhhhhhhcccchhhHHHhhh
Q 008137          189 MLGVAGLPAVVQFGL-MMMLPESPRWLYRQNKVDEARAILEKIYPADQVEEEVNLLKQSVENEKAEEGLIGKDMISRLKG  267 (576)
Q Consensus       189 ~f~v~~~~~~~~~~~-~~~l~esp~~l~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (576)
                      .|++.++..++..+. .+++||+++..  +++ ++                                      ..+..++
T Consensus       164 ~f~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~--------------------------------------~~~~~~~  202 (394)
T PRK11652        164 CYLFLLLLGAGVTFSMARWMPETRPAD--ARR-TR--------------------------------------VLASYRT  202 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCccCccc--cch-hH--------------------------------------HHHHHHH
Confidence            999988776655443 45677764310  000 00                                      0023334


Q ss_pred             hcccchhhhhhHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcCCchhHHHHHHHHHhHHHHHHHHHHHHhhcccCChHHHH
Q 008137          268 AFGNKIVRRGLYAGVTVQVAQQFVGINTVMYYSPTIVQFAGFASKSTALALSLVTSGLNALGSIVSMAFVDKYGRRRLMI  347 (576)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dk~grr~~~~  347 (576)
                      .++++..+.....     .+..+.+...+..+.+.++++..+.+....+.+.....++.+++.++.+++.||.+++... 
T Consensus       203 ~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~-  276 (394)
T PRK11652        203 LLSNRRFNCYLLM-----LIGTLAGIAVFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLMWQ-  276 (394)
T ss_pred             HHcChHHHHHHHH-----HHHHHHHHHHHHHhChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence            4455544332211     1122233444455566777775444666777777777777888888888888888733322 


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhcCCCccccccccCCCCCCCCcccccCCCCcccccccccccccccCCCCCCCCCCcccc
Q 008137          348 VSMFGLSSCLVALAVVFFQAAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAHKGNEYLPGACLI  427 (576)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  427 (576)
                       ......++.+.+.......                                                            
T Consensus       277 -~~~~~~~~~~~~~~~~~~~------------------------------------------------------------  295 (394)
T PRK11652        277 -SVICCLLAGLLMWIPGWFG------------------------------------------------------------  295 (394)
T ss_pred             -HHHHHHHHHHHHHHHHHhc------------------------------------------------------------
Confidence             2222222222221111100                                                            


Q ss_pred             cccccccccccccccccccCCCCcchhHHHHHHHHHHHHhcCCcccccchhccccccccccccchhHHHHHHHHHHHHHH
Q 008137          428 DEKSTDTLCSDEHRTYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEIYPLRYRGVGGGIAAVSNWTSNLIVS  507 (576)
Q Consensus       428 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~g~~~~~  507 (576)
                                            ....+.......+...+.+. ..+....+..|.+| +.+|+..++.+....+|..+++
T Consensus       296 ----------------------~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~lg~~~~~  351 (394)
T PRK11652        296 ----------------------VMNVWTLLVPAALFFFGAGM-LFPLATSGAMEPFP-YLAGTAGALLGGLQNIGSGLAA  351 (394)
T ss_pred             ----------------------cccHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhcc-ccchHHHHHHHHHHHHHHHHHH
Confidence                                  00113333333444444332 34455566678776 5789999999999999999999


Q ss_pred             HHHHHHHHh
Q 008137          508 LTFLTLTEA  516 (576)
Q Consensus       508 ~~~~~l~~~  516 (576)
                      .+.+.+.+.
T Consensus       352 ~~~~~~~~~  360 (394)
T PRK11652        352 LLSAMLPQT  360 (394)
T ss_pred             HHHHHccCC
Confidence            988876544

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.96  E-value=1.1e-25  Score=239.34  Aligned_cols=360  Identities=15%  Similarity=0.120  Sum_probs=249.6

Q ss_pred             HHHHhhhhhhhhHHHHHHH-HHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHH
Q 008137           36 IGGLLFGYDTGVISGALLY-IKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFIGAIIM  114 (576)
Q Consensus        36 l~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~  114 (576)
                      ...++.........+.++. +.++++.+..+.   |++.+...++..+.+++.|+++||+|||+++.++.++..++.+++
T Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~---gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~   93 (400)
T PRK11646         17 IDNMLVVLGFFVVFPLISIRFVDQLGWAAVMV---GIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATM   93 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHH---HHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHH
Confidence            3444445555555666654 678899988888   999999999999999999999999999999999999999999999


Q ss_pred             HhcchHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHhH
Q 008137          115 AIAPQPWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFTKAPGTWRWMLGVAG  194 (576)
Q Consensus       115 ~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~Wr~~f~v~~  194 (576)
                      +++++++.+++.|+++|++.+...+...+++.|++|+++|++++++.+....+|..+||.+++.+. .. +||+.|++.+
T Consensus        94 ~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~-~~-g~~~~f~~~~  171 (400)
T PRK11646         94 AIAHEPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL-QY-DFRLVCATGA  171 (400)
T ss_pred             HHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hh-hHHHHHHHHH
Confidence            999999999999999999999889999999999999999999999999999999999999999998 44 4999999988


Q ss_pred             HHHHHHHHH-HhhccCChhHHhhcCCHHHHHHHHHHhCCchhhhHHHHHHHHHHHhhhhhhcccchhhHHHhhhhcccch
Q 008137          195 LPAVVQFGL-MMMLPESPRWLYRQNKVDEARAILEKIYPADQVEEEVNLLKQSVENEKAEEGLIGKDMISRLKGAFGNKI  273 (576)
Q Consensus       195 ~~~~~~~~~-~~~l~esp~~l~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (576)
                      +..++..+. .+++||.+.   .+.+ ++                                      ..++++..++++.
T Consensus       172 ~~~~~~~i~~~~~~~~~~~---~~~~-~~--------------------------------------~~~~~~~~~~~~~  209 (400)
T PRK11646        172 VLFVLAAAFNAWLLPAYKL---STVR-TP--------------------------------------VREGMTRVLRDKR  209 (400)
T ss_pred             HHHHHHHHHHHHhCCcccc---cccc-hh--------------------------------------hHHHHHHHHcCch
Confidence            776665444 344554211   0000 00                                      0022333444443


Q ss_pred             hhhhhHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcCCchhHHHHHHHHHhHHHHHHHHHHHHhh-cccCChHHHHHHHHH
Q 008137          274 VRRGLYAGVTVQVAQQFVGINTVMYYSPTIVQFAGFASKSTALALSLVTSGLNALGSIVSMAFV-DKYGRRRLMIVSMFG  352 (576)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~-dk~grr~~~~~~~~~  352 (576)
                      ++....     ..+..+........+.|.++++.++ +....+.+.....++...+....+.+. ||++.++.+..++++
T Consensus       210 ~~~~~~-----~~~~~~~~~~~~~~~~p~~~~~~~~-~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~  283 (400)
T PRK11646        210 FVTYVL-----TLTGYYMLAVQVMLMLPIMVNDIAG-SPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLI  283 (400)
T ss_pred             HHHHHH-----HHHHHHHHHHHHHHhhhhhHHhhcC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence            322111     1111111122334577888888777 445566665555555554444445555 456656666666666


Q ss_pred             HHHHHHHHHHHHHHhhhcCCCccccccccCCCCCCCCcccccCCCCcccccccccccccccCCCCCCCCCCccccccccc
Q 008137          353 LSSCLVALAVVFFQAAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAHKGNEYLPGACLIDEKST  432 (576)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  432 (576)
                      ..++.+++.....                                                                   
T Consensus       284 ~~~~~~~l~~~~~-------------------------------------------------------------------  296 (400)
T PRK11646        284 MSLSMFPIGMVSN-------------------------------------------------------------------  296 (400)
T ss_pred             HHHHHHHHHHhhh-------------------------------------------------------------------
Confidence            6666554443311                                                                   


Q ss_pred             ccccccccccccccCCCCcchhHHHHHHHHHHHHhcCCcccccchhccccccccccccchhHHHHHHHHHHHHHHHHHHH
Q 008137          433 DTLCSDEHRTYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEIYPLRYRGVGGGIAAVSNWTSNLIVSLTFLT  512 (576)
Q Consensus       433 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~g~~~~~~~~~~  512 (576)
                                          .+..++...++..+.. ...|...++..+..|++.||++.|+.+....+|..++|.+.|.
T Consensus       297 --------------------~~~~~~~~~l~~~g~~-~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~  355 (400)
T PRK11646        297 --------------------LQQLFTLICLFYIGSI-IAEPARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGW  355 (400)
T ss_pred             --------------------HHHHHHHHHHHHHHHH-HHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHH
Confidence                                1222222233333332 2234555778899999999999999999999999999999999


Q ss_pred             HHHhhc----cchhhHHHHHHHHHHHHH
Q 008137          513 LTEALG----SAGTFLLFAGFSLLGLVA  536 (576)
Q Consensus       513 l~~~~g----~~~~~~~~~~~~~i~~~~  536 (576)
                      +.|..+    ...+++..+++++++.+.
T Consensus       356 l~~~~~~~~~~~~~~~~~~~~~~~~~~~  383 (400)
T PRK11646        356 LFDLGKALNQPELPWMMLGIIGLITLLA  383 (400)
T ss_pred             HHHHHhhcCCcchHHHHHHHHHHHHHHH
Confidence            998854    234455555555555444

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=99.95  E-value=1.2e-25  Score=239.74  Aligned_cols=356  Identities=10%  Similarity=0.026  Sum_probs=250.6

Q ss_pred             HHHHHHHHHhhhhhhhhHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHH
Q 008137           31 ALSAGIGGLLFGYDTGVISGALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFIG  110 (576)
Q Consensus        31 ~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~  110 (576)
                      +..+++..++.+++.+..++++|.++++++.+..+.   |++.+.+.+++.+++++.|++.||+|||+++.++.++++++
T Consensus         5 ~~~~~~~f~~~G~~~~~~~~l~~~~~~~~~~s~~~~---g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g   81 (410)
T TIGR00885         5 FALITSLFALWGFANDITNPMVPQFQQAFTLTAFQA---ALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALG   81 (410)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHH
Confidence            446667778889999999999999999999999888   99999999999999999999999999999999999999999


Q ss_pred             HHHHHh---cchHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCC----
Q 008137          111 AIIMAI---APQPWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFTKAP----  183 (576)
Q Consensus       111 ~~~~~~---~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~~----  183 (576)
                      .++...   .++++.+++.|++.|+|.|...+....++.+..|+++|++.+++.+...++|..+++.++..+....    
T Consensus        82 ~~l~~~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~  161 (410)
T TIGR00885        82 AFLFWPAAEIMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQ  161 (410)
T ss_pred             HHHHHHHHhhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc
Confidence            988644   4689999999999999999999999999999999999999999999999999999999988774321    


Q ss_pred             ---------------------chhHHHHHHhHHHHHHHHHHHhh--ccCChhHHhhcCCHHHHHHHHHHhCCchhhhHHH
Q 008137          184 ---------------------GTWRWMLGVAGLPAVVQFGLMMM--LPESPRWLYRQNKVDEARAILEKIYPADQVEEEV  240 (576)
Q Consensus       184 ---------------------~~Wr~~f~v~~~~~~~~~~~~~~--l~esp~~l~~~~~~~~~~~~l~~i~~~~~~~~~~  240 (576)
                                           .+||++|++.+++.++..+.+.+  +||.++     ++.++  .               
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~~~~~~p~~~~-----~~~~~--~---------------  219 (410)
T TIGR00885       162 SQDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALLIMLTKMPALNH-----SDAKQ--I---------------  219 (410)
T ss_pred             hhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc-----ccccc--c---------------
Confidence                                 24999999988877765544433  343211     00000  0               


Q ss_pred             HHHHHHHHhhhhhhcccchhhHHHhhhhcccchhhhhhHHHHHHHHHHHHHhhHHHHhhhHHHHHhhc-CCchhHHHHHH
Q 008137          241 NLLKQSVENEKAEEGLIGKDMISRLKGAFGNKIVRRGLYAGVTVQVAQQFVGINTVMYYSPTIVQFAG-FASKSTALALS  319 (576)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  319 (576)
                                         +...+.++.++++..+..     ....+...........+.+.|.++.+ ..+...+....
T Consensus       220 -------------------~~~~~~~~~~~~~~~~~~-----~l~~f~yvg~e~~~~s~l~~y~~~~~~~~~~~~a~~~~  275 (410)
T TIGR00885       220 -------------------SFSASLSRLARIRHYREG-----VIAQFFYVGVQIMCWTFIIQYAVRLIPGMTAGFAANYN  275 (410)
T ss_pred             -------------------cchhhHHHHHhChhHHHH-----HHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHH
Confidence                               000122233444443321     11122222222334456677776543 22333333344


Q ss_pred             HHHhHHHHHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccccccCCCCCCCCcccccCCCCc
Q 008137          320 LVTSGLNALGSIVSMAFVDKYGRRRLMIVSMFGLSSCLVALAVVFFQAAIHAPTVSQIESSHFGGNNTCPAYITDGNAKS  399 (576)
Q Consensus       320 ~~~~~~~~ig~~~~g~l~dk~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  399 (576)
                      .......++|+++++++.||+++|+++.+..++..++.++......                                  
T Consensus       276 ~~~~~~~~vGR~~~~~l~~r~~~~~~l~i~~~~~~~~~ll~~~~~~----------------------------------  321 (410)
T TIGR00885       276 IGAMVIFFISRFIGTWLISYLAAHKVLMAYAIIGMALCLGSIFAGG----------------------------------  321 (410)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCC----------------------------------
Confidence            4445667899999999999999999887776666666555443210                                  


Q ss_pred             ccccccccccccccCCCCCCCCCCcccccccccccccccccccccccCCCCcchhHHHHHHHHHHHHhcCCcccccchhc
Q 008137          400 WNCMDCLKAKCGFCAHKGNEYLPGACLIDEKSTDTLCSDEHRTYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVN  479 (576)
Q Consensus       400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  479 (576)
                                                                            ......+.+.+.+.+ .+.|..++..
T Consensus       322 ------------------------------------------------------~~~~~~l~~~glf~s-~~fp~i~sl~  346 (410)
T TIGR00885       322 ------------------------------------------------------HVGLYCLTLCSAFMS-LMFPTIYGIA  346 (410)
T ss_pred             ------------------------------------------------------hHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence                                                                  122333334444443 3346777888


Q ss_pred             cccccccccccchhHHHHHHHHHHHHHHHHHHHHHHhh------ccchhhHHH
Q 008137          480 SEIYPLRYRGVGGGIAAVSNWTSNLIVSLTFLTLTEAL------GSAGTFLLF  526 (576)
Q Consensus       480 ~e~~p~~~rg~~~g~~~~~~~~g~~~~~~~~~~l~~~~------g~~~~~~~~  526 (576)
                      .+..+++.+..+.++...  .+|+.+.|.+.|.+.|..      +.+.+|++.
T Consensus       347 ~~~~g~~~~~~s~~l~~~--~~Gga~~p~l~G~~~d~~~~~~~~~~~~~~~~~  397 (410)
T TIGR00885       347 LKGLGQDTKYGAAGLVMA--IIGGGIVPPLQGFIIDMKEIAAAPAVNTSFILP  397 (410)
T ss_pred             HhhhhhhhhhhHHHHHHH--HhccchHHHHHHHHHHHhcccccCccchHHHHH
Confidence            888876655444444443  399999999999999954      355555543

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>PRK10054 putative transporter; Provisional

Probab=99.95  E-value=9.9e-26  Score=239.41  Aligned_cols=365  Identities=11%  Similarity=0.046  Sum_probs=255.2

Q ss_pred             HHHHHhhhhhhhhHHHHHHH-HHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHH
Q 008137           35 GIGGLLFGYDTGVISGALLY-IKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFIGAII  113 (576)
Q Consensus        35 ~l~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~  113 (576)
                      .+..++.........+.+|. +.+++|.+..+.   |++.+++.++..+++++.|+++||+|||++++++.++.+++.++
T Consensus        13 ~~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~---g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~   89 (395)
T PRK10054         13 LASSLLLTIGRGATLPFMTIYLSRQYSLSVDLI---GYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIA   89 (395)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHH
Confidence            34556667777777777765 557899999888   99999999999999999999999999999999999999999999


Q ss_pred             HHhcchHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHh
Q 008137          114 MAIAPQPWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFTKAPGTWRWMLGVA  193 (576)
Q Consensus       114 ~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~Wr~~f~v~  193 (576)
                      .+++++++.++++|++.|.+.+...+....+..|.+|+++|++++++.+...++|..++|++++.+.+ . +||+.|++.
T Consensus        90 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~-~-g~~~~f~~~  167 (395)
T PRK10054         90 IPLVNNVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVM-Q-SINLPFWLA  167 (395)
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-h-ccCcHHHHH
Confidence            99999999999999999998888888899999999999999999999999999999999999999875 4 499999998


Q ss_pred             HHHHHHHHHH-HhhccCChhHHhhcCCHHHHHHHHHHhCCchhhhHHHHHHHHHHHhhhhhhcccchhhHHHhhhhcccc
Q 008137          194 GLPAVVQFGL-MMMLPESPRWLYRQNKVDEARAILEKIYPADQVEEEVNLLKQSVENEKAEEGLIGKDMISRLKGAFGNK  272 (576)
Q Consensus       194 ~~~~~~~~~~-~~~l~esp~~l~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (576)
                      +++.++.++. .+.+||+++..  +.+ ++  +                            .        .+.++.++++
T Consensus       168 ~~~~~i~~i~~~~~~~~~~~~~--~~~-~~--~----------------------------~--------~~~~~~~~~~  206 (395)
T PRK10054        168 AICSAFPLVFIQIWVQRSEKAI--ATE-TG--S----------------------------V--------WSPSVLLQDK  206 (395)
T ss_pred             HHHHHHHHHHHHHHHhcccccc--ccc-hh--h----------------------------h--------hhhhhhccCc
Confidence            8877776544 34455543210  000 00  0                            0        1113344444


Q ss_pred             hhhhhhHHHHHHHHHHHHHhhHHHHhhhHHHHHhhc--CCchhHHHHHHHHHhHHHHHHHHHHHHhhcccCChHHHHHHH
Q 008137          273 IVRRGLYAGVTVQVAQQFVGINTVMYYSPTIVQFAG--FASKSTALALSLVTSGLNALGSIVSMAFVDKYGRRRLMIVSM  350 (576)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dk~grr~~~~~~~  350 (576)
                      ..+.......+.    .+ .......+.+.+.....  ..+....+.......+......+..+.+.||.++|+.+..++
T Consensus       207 ~~~~~~~~~~l~----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~  281 (395)
T PRK10054        207 ALLWFTCSGFLA----SF-VSGAFASCISQYVMVVADSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAANIRPLMTAGT  281 (395)
T ss_pred             eehHHHHHHHHH----HH-HHHHhhhhHHHHHHHhcccchHHHHHHHHHHhhhhheeeehhHHHHHHccCCchhHHHHHH
Confidence            443322221111    11 12222233444443221  113444455555555555666778889999999999888887


Q ss_pred             HHHHHHHHHHHHHHHHhhhcCCCccccccccCCCCCCCCcccccCCCCcccccccccccccccCCCCCCCCCCccccccc
Q 008137          351 FGLSSCLVALAVVFFQAAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAHKGNEYLPGACLIDEK  430 (576)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  430 (576)
                      .+..++..++......                                                                
T Consensus       282 ~~~~~~~~~~~~~~~~----------------------------------------------------------------  297 (395)
T PRK10054        282 LCFVIGLVGFIFSGNS----------------------------------------------------------------  297 (395)
T ss_pred             HHHHHHHHHHHHcchH----------------------------------------------------------------
Confidence            7777666555432110                                                                


Q ss_pred             ccccccccccccccccCCCCcchhHHHHHHHHHHHHhcCCcccccchhccccccccccccchhHHHHHHHHHHHHHHHHH
Q 008137          431 STDTLCSDEHRTYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEIYPLRYRGVGGGIAAVSNWTSNLIVSLTF  510 (576)
Q Consensus       431 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~g~~~~~~~~  510 (576)
                                            .+...+...++..+.. ...|.......+..|++.|++..+..+ ..++|..++|.+.
T Consensus       298 ----------------------~~~~~~~~~~~~~g~~-~~~p~~~~~~~~~~p~~~~~~~~~~~~-~~~~G~~~Gp~~~  353 (395)
T PRK10054        298 ----------------------LLLWGMSAAVFTVGEI-IYAPGEYMLIDHIAPPGMKASYFSAQS-LGWLGAAINPLVS  353 (395)
T ss_pred             ----------------------HHHHHHHHHHHHHHHH-HHHhhHHHHHHHhCCcccceehHhHHH-HHHHHHHHHHHHH
Confidence                                  1222223333333322 223455567788899999999988755 6779999999999


Q ss_pred             HHHHHhhccchhhHHHHHHHHHHHHHHH
Q 008137          511 LTLTEALGSAGTFLLFAGFSLLGLVAIY  538 (576)
Q Consensus       511 ~~l~~~~g~~~~~~~~~~~~~i~~~~~~  538 (576)
                      |.+.|..|+...|++.+.+..+..++..
T Consensus       354 G~l~~~~g~~~~~~~~~~~~~~~~~~~~  381 (395)
T PRK10054        354 GVILTTLPPWSLFVILALAIVAAWLLML  381 (395)
T ss_pred             HHHHHHcChhhHHHHHHHHHHHHHHHHH
Confidence            9999999887777776665555554443

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=99.95  E-value=2.9e-26  Score=239.98  Aligned_cols=292  Identities=17%  Similarity=0.122  Sum_probs=207.2

Q ss_pred             HHHHHHHhhhhhhhhHHHHHHH-HHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHH
Q 008137           33 SAGIGGLLFGYDTGVISGALLY-IKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFIGA  111 (576)
Q Consensus        33 ~~~l~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~  111 (576)
                      +.+++.++...+...+.+..|. +.+++|.+..+.   +++.+++.+++.+++++.|+++||+|||+.++++.+++.++.
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~---~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~   81 (366)
T TIGR00886         5 FSWFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQL---GNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPC   81 (366)
T ss_pred             HHHHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHHh---hHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHH
Confidence            4556667778888889999995 999999999888   999999999999999999999999999999999999999999


Q ss_pred             HHHHhcc-hHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhcCC--------
Q 008137          112 IIMAIAP-QPWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFTKA--------  182 (576)
Q Consensus       112 ~~~~~~~-~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~--------  182 (576)
                      +++++++ +++.+++.|+++|++.+ ..+....+++|++|+++|++++++......+|..+++.+++.+...        
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~  160 (366)
T TIGR00886        82 LWAGLAVQSYSVLLLLRLFIGIAGG-SFASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLP  160 (366)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHhch-hhHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccccc
Confidence            9999999 99999999999999866 4566789999999999999999999977777777777666554431        


Q ss_pred             -CchhHHHH-HHhHHHHHHHHHH-HhhccCChhHHhhcCCHHHHHHHHHHhCCchhhhHHHHHHHHHHHhhhhhhcccch
Q 008137          183 -PGTWRWML-GVAGLPAVVQFGL-MMMLPESPRWLYRQNKVDEARAILEKIYPADQVEEEVNLLKQSVENEKAEEGLIGK  259 (576)
Q Consensus       183 -~~~Wr~~f-~v~~~~~~~~~~~-~~~l~esp~~l~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (576)
                       ..+||+.| +..+++..+..++ +...+|+|+...   +.++.+.       .+. ...         .+        +
T Consensus       161 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-------~~~-~~~---------~~--------~  212 (366)
T TIGR00886       161 AHLAWGWAFVIVPAGILLLPALLIFFVGADTPPGKP---ATGKLSF-------KGA-RWS---------VG--------T  212 (366)
T ss_pred             ccccccchhHHHHHHHHHHHHHHHHHhcccCCcccc---cchhccc-------ccc-ccc---------cc--------c
Confidence             11499999 4445544443333 445666653111   0000000       000 000         00        0


Q ss_pred             hhHHHhhhhcccchhhhhhHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcCCchhHHHHHHHHHhHHHHHHHHHHHHhhcc
Q 008137          260 DMISRLKGAFGNKIVRRGLYAGVTVQVAQQFVGINTVMYYSPTIVQFAGFASKSTALALSLVTSGLNALGSIVSMAFVDK  339 (576)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dk  339 (576)
                      +.....++.++++..+     ...+..+..+.....+..+.|.++++..+.+..+++.+.....+.++++.++.|+++||
T Consensus       213 ~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r  287 (366)
T TIGR00886       213 GALGDQLKVFRDRHTW-----ILALLYSVTFGSFLGVSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDR  287 (366)
T ss_pred             hhHHHHHHHHhccchh-----hHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHh
Confidence            0001223344443322     22222333333445566777888877655577777877778888889999999999999


Q ss_pred             cCChHHHHHHHHHHHHHHHHHH
Q 008137          340 YGRRRLMIVSMFGLSSCLVALA  361 (576)
Q Consensus       340 ~grr~~~~~~~~~~~~~~~~~~  361 (576)
                      +|||+.+..+......+..++.
T Consensus       288 ~g~~~~~~~~~~~~~~~~~~~~  309 (366)
T TIGR00886       288 LGGARKLLMSFLGVAMGAFLVV  309 (366)
T ss_pred             hccchhHHHHHHHHHHHHHHHH
Confidence            9999887776665555554444

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.95  E-value=7.5e-27  Score=249.81  Aligned_cols=366  Identities=16%  Similarity=0.178  Sum_probs=273.4

Q ss_pred             HhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHhcc--hHHHHHHHHHHHHhhh
Q 008137           57 EDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFIGAIIMAIAP--QPWVIILGRIFVGLGV  134 (576)
Q Consensus        57 ~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~--~~~~l~~~R~l~G~~~  134 (576)
                      .+++.+..+.   +++.+.++.|+.+++++.|+++||||.|+++..+.++.++++++..++.  +++.+++.|++||++.
T Consensus        66 ~~~~ws~~~k---~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~~  142 (466)
T KOG2532|consen   66 GEYDWSSTEK---GLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGLGQ  142 (466)
T ss_pred             ceecCCHHHH---HHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHHH
Confidence            3566777777   9999999999999999999999999999999999999999999998875  5567899999999999


Q ss_pred             hhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHhHHHHHHHHHHHhh-ccCChhH
Q 008137          135 GMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFTKAPGTWRWMLGVAGLPAVVQFGLMMM-LPESPRW  213 (576)
Q Consensus       135 g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~Wr~~f~v~~~~~~~~~~~~~~-l~esp~~  213 (576)
                      |..+|....+.+.|.|++||++..++...+..+|.+++.+++|++.+...||+++|++.++.++++.++|++ ..|+|..
T Consensus       143 g~~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~~d~P~~  222 (466)
T KOG2532|consen  143 GVLFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFYSDSPSK  222 (466)
T ss_pred             hHHHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhcCCccc
Confidence            999999999999999999999999999999999999999999999988334999999999999999988765 4666653


Q ss_pred             HhhcCCHHHHHHHHHHhCCchhhhHHHHHHHHHHHhhhhhhcccchhhHHHhhhhcccchhhhhhHHHHHHHHHHHHHhh
Q 008137          214 LYRQNKVDEARAILEKIYPADQVEEEVNLLKQSVENEKAEEGLIGKDMISRLKGAFGNKIVRRGLYAGVTVQVAQQFVGI  293 (576)
Q Consensus       214 l~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (576)
                      ...- ..+|                 .+.+++...++...++     ...+++++++++.     ++.+.+..+....+.
T Consensus       223 h~~i-s~~E-----------------l~~I~~~k~~~~~~~~-----~~vP~~~i~ts~~-----vwai~~~~f~~~~~~  274 (466)
T KOG2532|consen  223 HPNI-SEKE-----------------LKYIEKGKSEAHVKKK-----PPVPYKAILTSPP-----VWAIWISAFGGNWGF  274 (466)
T ss_pred             CCCC-CHHH-----------------HHHHHhcccccccCCC-----CCCCHHHHHcCHH-----HHHHHHHHHHHHHHH
Confidence            1111 1111                 1111111111111100     1146677777664     444566666677778


Q ss_pred             HHHHhhhHHHHHhhcCCchhHHHHHHHHHhHHHHHHHHHHHHhhcccCCh--------HH-HHHHHHHHHHHHHHHHHHH
Q 008137          294 NTVMYYSPTIVQFAGFASKSTALALSLVTSGLNALGSIVSMAFVDKYGRR--------RL-MIVSMFGLSSCLVALAVVF  364 (576)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dk~grr--------~~-~~~~~~~~~~~~~~~~~~~  364 (576)
                      ..+..|.|.|++++.+.+....++++.++.+...+..+++|.++||+.+|        |. -.+++...+++++.+.+..
T Consensus       275 ~~l~~y~PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~i~~~~~ai~l~~l~~~~  354 (466)
T KOG2532|consen  275 YLLLTYLPTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNTIAFGGPAVFLLVLAFTS  354 (466)
T ss_pred             HHHHHHhhHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHhHHHHHHHHHHHeeeecC
Confidence            89999999999999888999999999999999999999999999998552        22 2344444444444444331


Q ss_pred             HHhhhcCCCccccccccCCCCCCCCcccccCCCCcccccccccccccccCCCCCCCCCCccccccccccccccccccccc
Q 008137          365 FQAAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAHKGNEYLPGACLIDEKSTDTLCSDEHRTYF  444 (576)
Q Consensus       365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  444 (576)
                                                                                                      
T Consensus       355 --------------------------------------------------------------------------------  354 (466)
T KOG2532|consen  355 --------------------------------------------------------------------------------  354 (466)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccCCCCcchhHHHHHHHHHHHHhcCCcccccchhccccccccccccchhHHHHHHHHHHHHHHHHHHHHHH---hhccch
Q 008137          445 ISGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEIYPLRYRGVGGGIAAVSNWTSNLIVSLTFLTLTE---ALGSAG  521 (576)
Q Consensus       445 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~g~~~~~~~~~~l~~---~~g~~~  521 (576)
                           .+..+..++++.+.....+....  ......-...+++.+..+|+.+....+.++++|.+++.+.+   ...|+.
T Consensus       355 -----~~~~~~a~~~l~~~~~~~g~~~~--Gf~~~~~~~apq~a~~l~g~~~~~~~~~~~~~P~~vg~~~~~~t~~eW~~  427 (466)
T KOG2532|consen  355 -----DEHRLLAVILLTIAIGLSGFNIS--GFYKNHQDIAPQHAGFVMGIINFVGALAGFIAPLLVGIIVTDNTREEWRI  427 (466)
T ss_pred             -----CCcchHHHHHHHHHHHHcccchh--hhHhhhhhccchHHHHHHHHHHHHHHHHHHHHHHheeeEeCCCCHHHHHH
Confidence                 11123334444443333332222  11222222156888999999999999999999999999984   347888


Q ss_pred             hhHHHHHHHHHHHHHHHhh
Q 008137          522 TFLLFAGFSLLGLVAIYLL  540 (576)
Q Consensus       522 ~~~~~~~~~~i~~~~~~~~  540 (576)
                      .|++.+++.+++.++..++
T Consensus       428 VF~i~a~i~~~~~i~f~~f  446 (466)
T KOG2532|consen  428 VFLIAAGILIVGNIIFLFF  446 (466)
T ss_pred             HHHHHHHHHHHhchheeEe
Confidence            9999999998888665444

>TIGR00896 CynX cyanate transporter

Probab=99.95  E-value=1.3e-25  Score=234.69  Aligned_cols=335  Identities=17%  Similarity=0.188  Sum_probs=240.3

Q ss_pred             hhhhHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHhcchHHHH
Q 008137           44 DTGVISGALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFIGAIIMAIAPQPWVI  123 (576)
Q Consensus        44 ~~~~~~~~~~~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l  123 (576)
                      ....+++++|.+.+++|.+..+.   +++.+++.++..+++++.|+++||+|||+++.++.++..++.+.+ .+++++.+
T Consensus        15 ~~~~~~~~lp~l~~~~~~s~~~~---g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~~~~~~l   90 (355)
T TIGR00896        15 ALTSVGPLLPQIRSALGMSFSVA---GLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-SAPGTALL   90 (355)
T ss_pred             ccccCcccHHHHHHHhCCCHHHH---HHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-HhccHHHH
Confidence            34567889999999999999888   999999999999999999999999999999999999988888887 78899999


Q ss_pred             HHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCc-hhHHHHHHhHHHHHHHHH
Q 008137          124 ILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFTKAPG-TWRWMLGVAGLPAVVQFG  202 (576)
Q Consensus       124 ~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~-~Wr~~f~v~~~~~~~~~~  202 (576)
                      ++.|++.|++.+...+....++.|++| ++|++++++++.+..+|..+++.+.+.+.+..+ +||+.|.+.+++.++.. 
T Consensus        91 ~~~~~~~g~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~~~~~~~~~~~-  168 (355)
T TIGR00896        91 FAGTALIGVGIAIINVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQALAWWALPALLAL-  168 (355)
T ss_pred             HHHHHHHHHHHHHHhccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH-
Confidence            999999999999988888889999986 689999999999999999999999888876543 39999987766544332 


Q ss_pred             HHhhccCChhHHhhcCCHHHHHHHHHHhCCchhhhHHHHHHHHHHHhhhhhhcccchhhHHHhhhhcccchhhhhhHHHH
Q 008137          203 LMMMLPESPRWLYRQNKVDEARAILEKIYPADQVEEEVNLLKQSVENEKAEEGLIGKDMISRLKGAFGNKIVRRGLYAGV  282 (576)
Q Consensus       203 ~~~~l~esp~~l~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (576)
                       ..++|+.++.   +.+ ++                             ....       ...++.++++..+     ..
T Consensus       169 -~~~~~~~~~~---~~~-~~-----------------------------~~~~-------~~~~~~~~~~~~~-----~~  202 (355)
T TIGR00896       169 -LAWIPQVRRR---VAA-NQ-----------------------------TTTR-------LTPVRIWRSPLAW-----QV  202 (355)
T ss_pred             -HHHhhhhccc---cCC-CC-----------------------------CCCC-------CCCchhhcCHhHH-----HH
Confidence             2233433210   000 00                             0000       1122333443322     22


Q ss_pred             HHHHHHHHHhhHHHHhhhHHHHHhhcCCchhHHHHHHHHHhHHHHHHHHHHHHhhccc-CChHHHHHHHHHHHHHHHHHH
Q 008137          283 TVQVAQQFVGINTVMYYSPTIVQFAGFASKSTALALSLVTSGLNALGSIVSMAFVDKY-GRRRLMIVSMFGLSSCLVALA  361 (576)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dk~-grr~~~~~~~~~~~~~~~~~~  361 (576)
                      ..........+.....+.|.++++.+. +....+.......++.++++++.|++.||+ +||+.+..+.++..++.+.+.
T Consensus       203 ~~~~~~~~~~~~~~~~~lp~~~~~~g~-~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~  281 (355)
T TIGR00896       203 TVFFGLQSGLYYSLIGWLPAILISHGA-SAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLL  281 (355)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHH
Confidence            222233334455666788999988765 677778888888999999999999999999 566666666666666655554


Q ss_pred             HHHHHhhhcCCCccccccccCCCCCCCCcccccCCCCcccccccccccccccCCCCCCCCCCcccccccccccccccccc
Q 008137          362 VVFFQAAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAHKGNEYLPGACLIDEKSTDTLCSDEHR  441 (576)
Q Consensus       362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  441 (576)
                      +....                                                                           
T Consensus       282 ~~~~~---------------------------------------------------------------------------  286 (355)
T TIGR00896       282 FAPMH---------------------------------------------------------------------------  286 (355)
T ss_pred             Hhhhh---------------------------------------------------------------------------
Confidence            33110                                                                           


Q ss_pred             cccccCCCCcchhHHHHHHHHHHHHhcCCcccccchhcc-ccccccccccchhHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 008137          442 TYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNS-EIYPLRYRGVGGGIAAVSNWTSNLIVSLTFLTLTEALGSA  520 (576)
Q Consensus       442 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-e~~p~~~rg~~~g~~~~~~~~g~~~~~~~~~~l~~~~g~~  520 (576)
                                  .... ...+++++.+ ...+....... +..+++.++...++.+....++..++|.+.|.+.|..|.+
T Consensus       287 ------------~~~~-~~~l~g~~~g-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~~g~~  352 (355)
T TIGR00896       287 ------------GLWA-WALVLGLGQG-GAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDISGNW  352 (355)
T ss_pred             ------------HHHH-HHHHHHHhhh-hHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence                        1111 2223333332 22233333333 3344567789999999999999999999999999988743

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.95  E-value=1.8e-26  Score=247.44  Aligned_cols=297  Identities=19%  Similarity=0.143  Sum_probs=223.3

Q ss_pred             hHHHHHHHHHHHHHhhhhhhhhHHHH-HHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHH
Q 008137           26 YIMKLALSAGIGGLLFGYDTGVISGA-LLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGAD  104 (576)
Q Consensus        26 ~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~  104 (576)
                      ..+.++..+++..+....|...++-. +..+.+|.++...+.   +.+.+++.++++++++++|.+.||++-.+.+....
T Consensus        42 ~dl~i~~~~~~~y~~~~~d~~si~~a~l~g~~edl~~~~~~l---~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~  118 (495)
T KOG2533|consen   42 LDLFILPFLCYLYFHAYLDKSSIVNASLSGLKEDLKLVGNQL---GVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSG  118 (495)
T ss_pred             HHHHHHHHHHHHHHHHhcchhcchhHHHcCCccccchhhhhh---hhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHH
Confidence            34455666677777777776654432 222557777777777   99999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcchHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhcC---
Q 008137          105 VLFFIGAIIMAIAPQPWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFTK---  181 (576)
Q Consensus       105 ~~~~i~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~---  181 (576)
                      +++++-++++....|++.+++.|++.|+.+++.+|....+++.|+.++||++.++++.+..++|.++|.+++..+.+   
T Consensus       119 ~~w~~~~~~~~~~~s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~  198 (495)
T KOG2533|consen  119 ILWGLFGFLTAAVHSFPGLIALRFLLGLFESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNG  198 (495)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcC
Confidence            99999999998899999999999999999999999999999999999999999999999999999999999998632   


Q ss_pred             ---CCchhHHHHHHhHHHHHHHHHH-HhhccCChhHHhhcCCHHHHHHHHHHhCCchhhhHHHHHHHHHHHhhhhhhccc
Q 008137          182 ---APGTWRWMLGVAGLPAVVQFGL-MMMLPESPRWLYRQNKVDEARAILEKIYPADQVEEEVNLLKQSVENEKAEEGLI  257 (576)
Q Consensus       182 ---~~~~Wr~~f~v~~~~~~~~~~~-~~~l~esp~~l~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (576)
                         .. +|||.|++.|+++++..+. ++++|+.|....-..+.++                  +...+..++..... ..
T Consensus       199 ~~~~~-gW~~~FiI~G~i~~~~gi~~f~~lp~~P~~~~fl~~~ek------------------~~~~~~~~~~~~~~-~~  258 (495)
T KOG2533|consen  199 SGGLA-GWRWLFIIEGVITLVLGIVVFFFLPDNPSKAWFLTDEEK------------------ELVVERLRESPSGG-IE  258 (495)
T ss_pred             CCCcC-CceeehhHHHHHHHHHHheEEEEecCChhhccccchHHH------------------HHHHHHHHhccCCC-cc
Confidence               23 5999999999998887665 6779999862211111000                  00000000000000 00


Q ss_pred             chhhHHHhhhhcccchhhhhhHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcCCchhHHHHHHHHHhHHHHHHHHHHHHhh
Q 008137          258 GKDMISRLKGAFGNKIVRRGLYAGVTVQVAQQFVGINTVMYYSPTIVQFAGFASKSTALALSLVTSGLNALGSIVSMAFV  337 (576)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~  337 (576)
                      .+-.+..+++.++++..+.     ..+..++.....+.+.+|.|.++.+..+.+..++..+..+..++++++.+++|+++
T Consensus       259 ~~~~~~~~~~a~~dp~vw~-----~~l~~~~~~lv~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~ls  333 (495)
T KOG2533|consen  259 NKFKWKGFKEALKDPGVWP-----FSLCYFFLKLVNYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLS  333 (495)
T ss_pred             cccCHHHHHHHHhchhHHH-----HHHHHHHHhhccccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHH
Confidence            0011255667777665443     44455555556788899999999985446888999999999999999999999999


Q ss_pred             ccc----CChHHHHHHH
Q 008137          338 DKY----GRRRLMIVSM  350 (576)
Q Consensus       338 dk~----grr~~~~~~~  350 (576)
                      ||+    .+|.......
T Consensus       334 dr~~~~~~~~~~~~~~~  350 (495)
T KOG2533|consen  334 DRLKTIFARRLLFIVFL  350 (495)
T ss_pred             HHHhhhHHHHHHHHHHH
Confidence            994    4454444333

>TIGR00805 oat sodium-independent organic anion transporter

Probab=99.95  E-value=5.7e-26  Score=253.80  Aligned_cols=307  Identities=14%  Similarity=0.142  Sum_probs=225.0

Q ss_pred             HHHHHHHHHHhhhhhhhhHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHH
Q 008137           30 LALSAGIGGLLFGYDTGVISGALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFI  109 (576)
Q Consensus        30 ~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i  109 (576)
                      .++..++..+......+.++.+++.+.++|+++..+.   |++.+.+.+++.++.++.|+++||+|||+.+.++.+++++
T Consensus        34 ~~~~~~~~~~~~~~~~g~~~~~l~~iek~F~lss~~~---G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~l  110 (633)
T TIGR00805        34 FSLLLTCAQLQGLLYNGLVNSSLTTIERRFKLSTSSS---GLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGL  110 (633)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhchhhhhhhCCCCCcc---eeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHH
Confidence            3345556777788888999999999999999999998   9999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcc---------------------------------------------------hHHHHHHHHHHHHhhhhhhh
Q 008137          110 GAIIMAIAP---------------------------------------------------QPWVIILGRIFVGLGVGMAS  138 (576)
Q Consensus       110 ~~~~~~~~~---------------------------------------------------~~~~l~~~R~l~G~~~g~~~  138 (576)
                      +++++++.+                                                   .+..++++|+++|+|.+..+
T Consensus       111 g~ll~alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~  190 (633)
T TIGR00805       111 GSFLLSLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIF  190 (633)
T ss_pred             HHHHHhChHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcch
Confidence            999998753                                                   25567899999999999999


Q ss_pred             hhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCC---------------------chhHHHHHHhHHHH
Q 008137          139 MTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFTKAP---------------------GTWRWMLGVAGLPA  197 (576)
Q Consensus       139 ~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~~---------------------~~Wr~~f~v~~~~~  197 (576)
                      +...+++.|++|+++|++++++++.+..+|..+|+++++++.+..                     +.||..|++.++++
T Consensus       191 ~~~~~~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~  270 (633)
T TIGR00805       191 PLGISYIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVA  270 (633)
T ss_pred             hcCchhhhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999887542                     13777898888888


Q ss_pred             HHHHHHHhhccCChhHHhhcCCHHHHHHHHHHhCCchhhhHHHHHHHHHHHhhhhhhcccchhhHHHhhhhcccchhhhh
Q 008137          198 VVQFGLMMMLPESPRWLYRQNKVDEARAILEKIYPADQVEEEVNLLKQSVENEKAEEGLIGKDMISRLKGAFGNKIVRRG  277 (576)
Q Consensus       198 ~~~~~~~~~l~esp~~l~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (576)
                      ++..+.++++|++.+....+.+.+..++..  .....+             +.........++.....+.+++++.++  
T Consensus       271 ~l~~v~l~~~p~~lp~~~~~~~~~~~~~~~--~~~~~~-------------~~~~~~~~~~~~~~~~~~~Ll~n~~f~--  333 (633)
T TIGR00805       271 LLTSIPFFFFPKALPKEGKRVNVDVHETEK--LEKSED-------------KSRKKNSDITKDFPKIIKRLLCNPIYM--  333 (633)
T ss_pred             HHHHHHHHhCccccCCcccccchhhhhhhc--cccccc-------------ccchhhhhhHHHHHHHHHHHHcCcHHH--
Confidence            877766677776532110000000000000  000000             000000001112224556677766443  


Q ss_pred             hHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcCCchhHHHHHHHHHhH-HHHHHHHHHHHhhcccCC--hHHHHHHHHHHH
Q 008137          278 LYAGVTVQVAQQFVGINTVMYYSPTIVQFAGFASKSTALALSLVTSG-LNALGSIVSMAFVDKYGR--RRLMIVSMFGLS  354 (576)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ig~~~~g~l~dk~gr--r~~~~~~~~~~~  354 (576)
                         ...+..+.....+..+..|.|.|+++..+.+...++.+.....+ +.++|.+++|+++||+++  |+.+..++++..
T Consensus       334 ---~~~l~~~~~~~~~~~~~~~lP~yl~~~~g~s~~~ag~l~~~~~i~~~~vG~~l~G~l~~r~~~~~~~~~~~~~~~~~  410 (633)
T TIGR00805       334 ---LVILAQVIDSLAFNGYITFLPKYLENQYGISSAEANFLIGVVNLPAAGLGYLIGGFIMKKFKLNVKKAAYFAICLST  410 (633)
T ss_pred             ---HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHhhhhhhhHHHHHHhhhhheeeeecccHHHHHHHHHHHHH
Confidence               34444444555567788899999988766688888877766555 568999999999999984  566666666666


Q ss_pred             HHHHH
Q 008137          355 SCLVA  359 (576)
Q Consensus       355 ~~~~~  359 (576)
                      ++.++
T Consensus       411 ~~~~~  415 (633)
T TIGR00805       411 LSYLL  415 (633)
T ss_pred             HHHHH
Confidence            65544

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.95  E-value=2.5e-25  Score=235.31  Aligned_cols=362  Identities=12%  Similarity=-0.004  Sum_probs=261.1

Q ss_pred             HHHHHHhhhhhhhhHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHH----HHHHHHHHH
Q 008137           34 AGIGGLLFGYDTGVISGALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISL----LGADVLFFI  109 (576)
Q Consensus        34 ~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~----~~~~~~~~i  109 (576)
                      +.+..+..++......|.+|.+.+++|.+..+.   |++.+++.+...++++++|+++||+|||...    .++..+..+
T Consensus         9 l~~~~~~~~~~~~~~~p~l~~~l~~~g~s~~~i---g~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~l~~~   85 (382)
T TIGR00902         9 LALGFFGYFCAYGIFLPFFPAWLKGIGLGEEMI---GLLIGAALIARFAGGLFFAPLIKDANHIIIALRLLALASAIFAA   85 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence            446667777778899999999999999988888   9999999999999999999999999985433    223222222


Q ss_pred             HHHHHHhcchHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHH
Q 008137          110 GAIIMAIAPQPWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFTKAPGTWRWM  189 (576)
Q Consensus       110 ~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~Wr~~  189 (576)
                        .++.++++++.+++.|.++|.+.+...|...++..++  .++|+++.+......++|.++++++++.+.+..+ ||+.
T Consensus        86 --~~~~~~~~~~~l~~~~~l~~~~~~~~~p~~~al~~~~--~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~~~g-~~~~  160 (382)
T TIGR00902        86 --AFSAGAHNAWLLFIAIGLFALFFSAGMPIGDALANTW--QKQFGLDYGKVRLIGSAAFIIGSALFGGLIGMFD-EQNI  160 (382)
T ss_pred             --HHHHhhhhHHHHHHHHHHHHHHHccchhHHHHHHHHH--HHHcCCCccHHHHHHHHHHHHHHHHHHHHHHHcC-hhHH
Confidence              2445678999999999999999998899988887765  4778999999999999999999999999998887 9999


Q ss_pred             HHHhHHHHHHHHHHHhhccCChhHHhhcCCHHHHHHHHHHhCCchhhhHHHHHHHHHHHhhhhhhcccchhhHHHhhhhc
Q 008137          190 LGVAGLPAVVQFGLMMMLPESPRWLYRQNKVDEARAILEKIYPADQVEEEVNLLKQSVENEKAEEGLIGKDMISRLKGAF  269 (576)
Q Consensus       190 f~v~~~~~~~~~~~~~~l~esp~~l~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (576)
                      |++..+..++.++ .+.++|+++.  .+++.++                             +.+      ..++.++.+
T Consensus       161 f~~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~-----------------------------~~~------~~~~~~~~l  202 (382)
T TIGR00902       161 LAILTAGLAFMLI-GFLIKPTIPP--KDAIPED-----------------------------ESQ------GDSAFIALL  202 (382)
T ss_pred             HHHHHHHHHHHHH-HHHcCCCCCC--Ccccccc-----------------------------ccc------cchhHHHHH
Confidence            9887665333333 3334443210  0000000                             000      002234555


Q ss_pred             ccchhhhhhHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcCCchhHHHHHHHHHhHHHHHHHHHHHHhhcccCChHHHHHH
Q 008137          270 GNKIVRRGLYAGVTVQVAQQFVGINTVMYYSPTIVQFAGFASKSTALALSLVTSGLNALGSIVSMAFVDKYGRRRLMIVS  349 (576)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dk~grr~~~~~~  349 (576)
                      +++.++.     .....+...........+.|.++++.+. +....+.+.....+..+++..+.+++.||+|+|+.+..+
T Consensus       203 ~~~~~~~-----~l~~~~l~~~~~~~~~~~~~~~l~~~g~-s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~  276 (382)
T TIGR00902       203 KNPMNLR-----FLAAVCLIQGAHAAYYGFSAIYWQAAGI-SASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLIS  276 (382)
T ss_pred             cChHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHCCC-CHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHH
Confidence            5554433     2222233334455666677888888666 666777777788888899999999999999999999998


Q ss_pred             HHHHHHHHHHHHHHHHHhhhcCCCccccccccCCCCCCCCcccccCCCCcccccccccccccccCCCCCCCCCCcccccc
Q 008137          350 MFGLSSCLVALAVVFFQAAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAHKGNEYLPGACLIDE  429 (576)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  429 (576)
                      .+...+..+++.....                                                                
T Consensus       277 ~~~~~~~~~~~~~~~~----------------------------------------------------------------  292 (382)
T TIGR00902       277 AIACVGRWAIIGAIEA----------------------------------------------------------------  292 (382)
T ss_pred             HHHHHHHHHHHHhHhh----------------------------------------------------------------
Confidence            8888888776654422                                                                


Q ss_pred             cccccccccccccccccCCCCcchhHHHHHHHHHHHHhcCCcccccchhccccccccccccchhHHH-HHHHHHHHHHHH
Q 008137          430 KSTDTLCSDEHRTYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEIYPLRYRGVGGGIAA-VSNWTSNLIVSL  508 (576)
Q Consensus       430 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~~~g~~~-~~~~~g~~~~~~  508 (576)
                                             .+..+....+.+..++.. .+....++++. |++.|++..++++ ....+|..++|.
T Consensus       293 -----------------------~~~~~~~q~l~g~~~~~~-~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~  347 (382)
T TIGR00902       293 -----------------------FPLIFLLQILHCGTFAVC-HLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTA  347 (382)
T ss_pred             -----------------------HHHHHHHHHHHHHHHHHH-HHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence                                   133344444444444433 23344677777 8889999999986 456789999999


Q ss_pred             HHHHHHHhhccchhhHHHHHHHHHHHHHH
Q 008137          509 TFLTLTEALGSAGTFLLFAGFSLLGLVAI  537 (576)
Q Consensus       509 ~~~~l~~~~g~~~~~~~~~~~~~i~~~~~  537 (576)
                      +.|.+.|..|. ..|++.++++++++++.
T Consensus       348 ~~G~l~~~~g~-~~~~~~~~~~~~~~~~~  375 (382)
T TIGR00902       348 FAGFIYPTLGA-GTFVFMAIIAAAAFFLI  375 (382)
T ss_pred             HHHHHHHhccH-HHHHHHHHHHHHHHHHH
Confidence            99999999986 67888888887765543

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.94  E-value=1.1e-24  Score=233.09  Aligned_cols=374  Identities=12%  Similarity=0.004  Sum_probs=233.1

Q ss_pred             HHHHhhhhhhhhHHHHHHHHHH-hhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHH
Q 008137           36 IGGLLFGYDTGVISGALLYIKE-DFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFIGAIIM  114 (576)
Q Consensus        36 l~~~~~~~~~~~~~~~~~~i~~-~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~  114 (576)
                      +..++..+....+.+.+|...+ ++|.+..+.   |++.+++.++..++++++|+++||+|||++++++..+..++....
T Consensus        17 ~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~---g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~   93 (420)
T PRK09528         17 LFFFFFFFIWSSWFSFFPIWLHDINGLSGTDT---GIIFSANSLFALLFQPLYGLISDKLGLKKHLLWIISGLLVLFGPF   93 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHH
Confidence            3444455555566677776554 599988888   999999999999999999999999999999988776665544322


Q ss_pred             H---hcch-----HHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchh
Q 008137          115 A---IAPQ-----PWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFTKAPGTW  186 (576)
Q Consensus       115 ~---~~~~-----~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~W  186 (576)
                      .   .++.     ....++.+++.|.+.....+....+..+ . .++|++.++......++|..+++++++.+.+.  +|
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~--~~  169 (420)
T PRK09528         94 FIYVFAPLLQYNILLGAIVGGIYLGFGFLAGAGAIEAYIER-V-SRRSGFEYGRARMWGSLGWALCAFIAGILFNI--NP  169 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhhccchhhhhhHHHH-H-HhhccccchhhHHhhhHHHHHHHHHHHHHHhc--Cc
Confidence            1   1111     1112223333333333323333333222 2 34567788888999999999999999988764  59


Q ss_pred             HHHHHHhHHHHHHHHHHHhhcc-CChhHHhhcCCHHHHHHHHHHhCCchhhhHHHHHHHHHHHhhhhhhcccchhhHHHh
Q 008137          187 RWMLGVAGLPAVVQFGLMMMLP-ESPRWLYRQNKVDEARAILEKIYPADQVEEEVNLLKQSVENEKAEEGLIGKDMISRL  265 (576)
Q Consensus       187 r~~f~v~~~~~~~~~~~~~~l~-esp~~l~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (576)
                      +++|++.+++.++.++..+.++ |.++....+++ ++                            .+.+    +...++.
T Consensus       170 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~----------------------------~~~~----~~~~~~~  216 (420)
T PRK09528        170 QINFWLGSGSALILLVLLFFAKPDAPSTAKVANA-LG----------------------------ANAS----AVSLKDA  216 (420)
T ss_pred             hHhHHHHHHHHHHHHHHHhcccccccchhhhccc-hh----------------------------cccc----cccHHHH
Confidence            9999998888777666655543 33221000000 00                            0000    0001233


Q ss_pred             hhhcccchhhhhhHHHHHHHHHHHHHhhHHHHhhhHHHHHhhc---CCchhHHHHHHHHHhHHHHHHHHHHHHhhcccCC
Q 008137          266 KGAFGNKIVRRGLYAGVTVQVAQQFVGINTVMYYSPTIVQFAG---FASKSTALALSLVTSGLNALGSIVSMAFVDKYGR  342 (576)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dk~gr  342 (576)
                      ++.++++.++...+......     ........+.|.++.+..   ..+....+.+.....+...++.++.|++.||+|+
T Consensus       217 ~~~l~~~~~~~l~l~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~  291 (420)
T PRK09528        217 LALLKLPKFWFLVLYVIGVA-----CFYDVFDQQFPNFFASFFATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGA  291 (420)
T ss_pred             HHHccCCCeEeehHHHHHHH-----HHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence            45566665443222111111     112222223444444321   2244556677777777888999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccccccCCCCCCCCcccccCCCCcccccccccccccccCCCCCCCCC
Q 008137          343 RRLMIVSMFGLSSCLVALAVVFFQAAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAHKGNEYLP  422 (576)
Q Consensus       343 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  422 (576)
                      |+.+..+.++..++.+++.+...                                                         
T Consensus       292 ~~~~~~~~~l~~~~~~l~~~~~~---------------------------------------------------------  314 (420)
T PRK09528        292 KNALLLAGTIMAVRIIGSGFATG---------------------------------------------------------  314 (420)
T ss_pred             chhhHHHHHHHHHHHHHHHhccc---------------------------------------------------------
Confidence            99988877777776665543211                                                         


Q ss_pred             CcccccccccccccccccccccccCCCCcchhHHHHHHHHHHHHhcCCcccccchhccccccccccccchhH-HHHHHHH
Q 008137          423 GACLIDEKSTDTLCSDEHRTYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEIYPLRYRGVGGGI-AAVSNWT  501 (576)
Q Consensus       423 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~~~g~-~~~~~~~  501 (576)
                                                    .+..+....+....+... .+....+..|.+|++.+++..+. .++...+
T Consensus       315 ------------------------------~~~~~~~~~l~g~~~~~~-~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~l  363 (420)
T PRK09528        315 ------------------------------PLEVSILKLLHAFEVPFL-LVGVFKYITLNFDVRLSATIYLVGFQFAKQL  363 (420)
T ss_pred             ------------------------------HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcCccceeeeeeehHHHHHHH
Confidence                                          122232222222222211 12234567788899999988766 5777899


Q ss_pred             HHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHhhcc
Q 008137          502 SNLIVSLTFLTLTEALGSAGTFLLFAGFSLLGLVAIYLLVP  542 (576)
Q Consensus       502 g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~  542 (576)
                      |.++++.+.|.+.|..|++.+|.+.+++.++..++.++..+
T Consensus       364 g~~ig~~~~G~l~~~~G~~~~f~~~~~~~~i~~~~~~~~~~  404 (420)
T PRK09528        364 GAVFLSTLAGNLYDSIGFQGTYLILGGIVLLFTLISVFTLS  404 (420)
T ss_pred             HHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHhc
Confidence            99999999999999999999999988888877766665554

>TIGR00889 2A0110 nucleoside transporter

Probab=99.94  E-value=1.7e-24  Score=231.68  Aligned_cols=376  Identities=11%  Similarity=-0.002  Sum_probs=250.2

Q ss_pred             HHHHHhhhhhhhhHHH-HHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCc-hHHHHHHHHHHHHHHH
Q 008137           35 GIGGLLFGYDTGVISG-ALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGR-KISLLGADVLFFIGAI  112 (576)
Q Consensus        35 ~l~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Gr-r~~~~~~~~~~~i~~~  112 (576)
                      ++..++.+.......+ +.+.+.+++|.+..+.   |++.+++.++..++++++|+++||+|| |+++.++.++.+++..
T Consensus         8 ~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~i---Gl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~   84 (418)
T TIGR00889         8 KFMSFLQWFIWGSWLVTLGSYMSKTLHFSGAEI---GWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALLLF   84 (418)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence            3444555666666644 4455667789998888   999999999999999999999999965 7888999999989999


Q ss_pred             HHHhcchHHHHHHHHHHHHhhhhhhhhhHHHHHHhc--------cCcchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Q 008137          113 IMAIAPQPWVIILGRIFVGLGVGMASMTAPLYISEA--------SPAKIRGALVSANGFLITGGQFLAYLINLAFTKAPG  184 (576)
Q Consensus       113 ~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~--------~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~  184 (576)
                      +..+.++++.+.+.|++.|++.+...+...+....+        .....|.+..|      .+|.++++.+++.+.... 
T Consensus        85 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~r~~G------~lG~~ig~~l~g~l~~~~-  157 (418)
T TIGR00889        85 FAAQVTTPAGMFPVLLANSLAYMPTIALTNSISYANLPQAGLDVVTDFPPIRVMG------TIGFIAAMWAVSLLDIEL-  157 (418)
T ss_pred             HHHHhcCHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhhcCCCchhcCCCeeeeh------hHHHHHHHHHHHHhcccc-
Confidence            999999999999999999998887777666553222        22223444444      468888888888774332 


Q ss_pred             hhHHHHHHhHHHHHHHHHHHhhccCChhHHhhcCCHHHHHHHHHHhCCchhhhHHHHHHHHHHHhhhhhhcccchhhHHH
Q 008137          185 TWRWMLGVAGLPAVVQFGLMMMLPESPRWLYRQNKVDEARAILEKIYPADQVEEEVNLLKQSVENEKAEEGLIGKDMISR  264 (576)
Q Consensus       185 ~Wr~~f~v~~~~~~~~~~~~~~l~esp~~l~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (576)
                      .|+ +|++.+++.++.++..+.+||+|+...  ++..+.++                                  ....+
T Consensus       158 ~~~-~f~~~~~~~~~~~~~~~~~~e~~~~~~--~~~~~~~~----------------------------------~~~~~  200 (418)
T TIGR00889       158 SNI-QLYITAGSSALLGVFALTLPDIPVAKS--TAKMSIKV----------------------------------MLGLD  200 (418)
T ss_pred             hhH-HHHHHHHHHHHHHHHHhcCCCCCCCcc--ccccCHHH----------------------------------Hhhhh
Confidence            255 455666655555555667888753110  00000000                                  00011


Q ss_pred             hhhhcccchhhhhhHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcCCc-------hhHHHHHHHHHhHHHHHHHHHHHHhh
Q 008137          265 LKGAFGNKIVRRGLYAGVTVQVAQQFVGINTVMYYSPTIVQFAGFAS-------KSTALALSLVTSGLNALGSIVSMAFV  337 (576)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~ig~~~~g~l~  337 (576)
                      .++.++++.++...+..++.     .........+.+.++++.+...       ....+.......+..+++.++.++++
T Consensus       201 ~~~~~k~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~  275 (418)
T TIGR00889       201 AFILFKNKRMAIFFFFSMLL-----GAPLQITNIFGNGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFL  275 (418)
T ss_pred             HHHHhcCCCeeeHHHHHHHH-----HhHHHHHHHhHHHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            23345555443322221111     1122233345567777665422       24456777777888889999999999


Q ss_pred             cccCChHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccccccCCCCCCCCcccccCCCCcccccccccccccccCCCC
Q 008137          338 DKYGRRRLMIVSMFGLSSCLVALAVVFFQAAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAHKG  417 (576)
Q Consensus       338 dk~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  417 (576)
                      ||+|||+++..+.++..++..++.......                                                  
T Consensus       276 dr~g~r~~l~~~~~~~~v~~~l~~~~~~~~--------------------------------------------------  305 (418)
T TIGR00889       276 KRFGIKKVMLLSLVAWALRFGFFAYGDPEY--------------------------------------------------  305 (418)
T ss_pred             HHhCcHHHHHHHHHHHHHHHHHHHHcCcch--------------------------------------------------
Confidence            999999999998888777765554421000                                                  


Q ss_pred             CCCCCCcccccccccccccccccccccccCCCCcchhHHHHHHHHHHHHhcCCcccccchhccccccccccccchhHHH-
Q 008137          418 NEYLPGACLIDEKSTDTLCSDEHRTYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEIYPLRYRGVGGGIAA-  496 (576)
Q Consensus       418 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~~~g~~~-  496 (576)
                                                       ...+..++..++.+.+++ ...+....+++|.+|++.|+++.|+.+ 
T Consensus       306 ---------------------------------~~~~~l~l~~~l~g~~~~-~~~~~~~~~i~~~~p~~~~g~~~g~~~~  351 (418)
T TIGR00889       306 ---------------------------------FGYALLFLSMIVYGCAFD-FFNISGSVFVEKEVPVHIRASAQGLFTL  351 (418)
T ss_pred             ---------------------------------hhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHCCHHHHHHHHHHHHH
Confidence                                             000222223333333333 223444567899999999999999997 


Q ss_pred             HHHHHHHHHHHHHHHHHHHhh------ccchhhHHHHHHHHHHHHHHHhhccCCCC
Q 008137          497 VSNWTSNLIVSLTFLTLTEAL------GSAGTFLLFAGFSLLGLVAIYLLVPETKG  546 (576)
Q Consensus       497 ~~~~~g~~~~~~~~~~l~~~~------g~~~~~~~~~~~~~i~~~~~~~~~~~~~~  546 (576)
                      ....+|.+++|.+.|.+.+..      ||+..|.+.+++.+++.++.+++.||+++
T Consensus       352 ~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~~~  407 (418)
T TIGR00889       352 MCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFKYSHN  407 (418)
T ss_pred             HHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhCCccc
Confidence            567899999999999999985      47778888888888888888888887644

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.94  E-value=1.6e-24  Score=260.11  Aligned_cols=374  Identities=12%  Similarity=0.022  Sum_probs=249.0

Q ss_pred             hhhhhHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHH---Hhcch
Q 008137           43 YDTGVISGALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFIGAIIM---AIAPQ  119 (576)
Q Consensus        43 ~~~~~~~~~~~~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~---~~~~~  119 (576)
                      .+......+.+.+..+++.+... ...+++.+++.+++.++++++|+++||+|||++++++.++..++.++.   ..+++
T Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~~~~  102 (1146)
T PRK08633         24 NDLGHKILIQNTLIKAYDGSEQV-ILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYLGW  102 (1146)
T ss_pred             HHHHHHHHHHHHHHHHcCcccHH-HHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence            34444555566676777665443 345999999999999999999999999999999999887766555544   34578


Q ss_pred             HHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhcCC--------CchhHHHHH
Q 008137          120 PWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFTKA--------PGTWRWMLG  191 (576)
Q Consensus       120 ~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~--------~~~Wr~~f~  191 (576)
                      ++.++++|+++|++.+...+...+++.|++|+++|++++++.+.+..+|.++|+++++++...        .++|++.+.
T Consensus       103 ~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~~~~~~~~~~~~~~~~~~  182 (1146)
T PRK08633        103 FWLAFAVTFLLGAQSAIYSPAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFESVNGNTPSEILGRIAPAG  182 (1146)
T ss_pred             HHHHHHHHHHHHHHHHhhchHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccccccchHHHH
Confidence            999999999999999999999999999999999999999999999999999999999998765        233555555


Q ss_pred             HhHHHH-HHHHHHHhhccCChhHHhhcCCHHHHHHHHHHhCCchhhhHHHHHHHHHHHhhhhhhcccchhhHHHhhhhcc
Q 008137          192 VAGLPA-VVQFGLMMMLPESPRWLYRQNKVDEARAILEKIYPADQVEEEVNLLKQSVENEKAEEGLIGKDMISRLKGAFG  270 (576)
Q Consensus       192 v~~~~~-~~~~~~~~~l~esp~~l~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (576)
                      +.++.. ++.+++.+.+||+|+....+.+.+..                                ...+.....++.+++
T Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------~~~~~~~~~~~~l~~  230 (1146)
T PRK08633        183 LVLLAVAVLGLIFAYRLPKVPAAAPEVFDKKKY--------------------------------LFPKLLWRNLKLLRS  230 (1146)
T ss_pred             HHHHHHHHHHHHHHhcCcCCCCCCccccccccc--------------------------------ccHHHHHHHHHHHhc
Confidence            444333 33344455677776422111000000                                000001123344455


Q ss_pred             cchhhhhhHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcCCchh-HHHHHHHHHhHHHHHHHHHHHHhhcccCChHHHHHH
Q 008137          271 NKIVRRGLYAGVTVQVAQQFVGINTVMYYSPTIVQFAGFASKS-TALALSLVTSGLNALGSIVSMAFVDKYGRRRLMIVS  349 (576)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ig~~~~g~l~dk~grr~~~~~~  349 (576)
                      ++.++..     .+..+..+........+.|.+++...+.+.. ..+++.....++.+++.++.+++.||+++++.+.++
T Consensus       231 ~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~  305 (1146)
T PRK08633        231 DRVLWLA-----IIGLSYFWFISQLAQANFPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLG  305 (1146)
T ss_pred             CcHHHHH-----HHHHHHHHHHHHHHHHhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHH
Confidence            5443332     2222222223344455667776655444555 778888888888999999999999999998888777


Q ss_pred             HHHHHHHHHHHHHHHHHhhhcCCCccccccccCCCCCCCCcccccCCCCcccccccccccccccCCCCCCCCCCcccccc
Q 008137          350 MFGLSSCLVALAVVFFQAAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAHKGNEYLPGACLIDE  429 (576)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  429 (576)
                      .++++++.+++.+...                                                                
T Consensus       306 ~~~~~~~~~~~~~~~~----------------------------------------------------------------  321 (1146)
T PRK08633        306 ALGLALSLFLLPTAPS----------------------------------------------------------------  321 (1146)
T ss_pred             HHHHHHHHHHHHHhhh----------------------------------------------------------------
Confidence            7777666655544321                                                                


Q ss_pred             cccccccccccccccccCCCCcchhHHHHHHHHHHHHhcCCcccccchhccccccccccccchhHHHHHHHHHHHHHHHH
Q 008137          430 KSTDTLCSDEHRTYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEIYPLRYRGVGGGIAAVSNWTSNLIVSLT  509 (576)
Q Consensus       430 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~g~~~~~~~  509 (576)
                                             .+..++..++++++.+.. .+...++..+..|++.||+++|+.+++..++.++++.+
T Consensus       322 -----------------------~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~  377 (1146)
T PRK08633        322 -----------------------LASVLVLFFLFGFSAGLF-IVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLAL  377 (1146)
T ss_pred             -----------------------HHHHHHHHHHHHHHHHHh-hHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHH
Confidence                                   123333334444433322 33455777899999999999999999999999888777


Q ss_pred             HHHHHHh-hccchhhHHHHHHHHHHHHHHHhhcc
Q 008137          510 FLTLTEA-LGSAGTFLLFAGFSLLGLVAIYLLVP  542 (576)
Q Consensus       510 ~~~l~~~-~g~~~~~~~~~~~~~i~~~~~~~~~~  542 (576)
                      .+.+... .++...+++.+.+.++..+..+...|
T Consensus       378 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  411 (1146)
T PRK08633        378 TTLFSGLGLSPAGLFYLIALVTLIGTLYTLLLLP  411 (1146)
T ss_pred             HHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHhH
Confidence            6655432 23333455555544444444433333

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.94  E-value=1.5e-23  Score=223.26  Aligned_cols=370  Identities=14%  Similarity=0.076  Sum_probs=250.2

Q ss_pred             HHHHhhhhhhhhHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhcc-----CchH-HHHHHHHHHHH
Q 008137           36 IGGLLFGYDTGVISGALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRF-----GRKI-SLLGADVLFFI  109 (576)
Q Consensus        36 l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~-----Grr~-~~~~~~~~~~i  109 (576)
                      .-++.+++........+|.+.++-|.+.++.   |++..+...  .+..+++|+++||+     |||| .+.++.++.++
T Consensus         6 ~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~i---g~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l   80 (402)
T PRK11902          6 LLGFASGLPLALTSGTLQAWMTVEGLDIQTI---GFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAA   80 (402)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHHcCCCHHHH---HHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHH
Confidence            4456678888899999999999999999998   888777665  58899999999999     8875 78888888888


Q ss_pred             HHHHHHhc---chHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchh
Q 008137          110 GAIIMAIA---PQPWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFTKAPGTW  186 (576)
Q Consensus       110 ~~~~~~~~---~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~W  186 (576)
                      +..+.++.   .+++.+++..++.+++.+...+...+++.|++|+++|+++.++...+..+|.++++.+++.+.+...+|
T Consensus        81 ~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~gw  160 (402)
T PRK11902         81 SIAAMAFCPPHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLADRVLGW  160 (402)
T ss_pred             HHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhcccCH
Confidence            88888887   357888888888899999999999999999999999999999999999999999999999888754349


Q ss_pred             HHHHHHhHHHHHHHHHHHhhccCChhHHhhcCCHHHHHHHHHHhCCchhhhHHHHHHHHHHHhhhhhhcccchhhHHHhh
Q 008137          187 RWMLGVAGLPAVVQFGLMMMLPESPRWLYRQNKVDEARAILEKIYPADQVEEEVNLLKQSVENEKAEEGLIGKDMISRLK  266 (576)
Q Consensus       187 r~~f~v~~~~~~~~~~~~~~l~esp~~l~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (576)
                      |..|++.+++.++..+..+.+||+++...   +.++.++                                  +..++++
T Consensus       161 ~~~f~i~a~~~l~~~l~~~~~~e~~~~~~---~~~~~~~----------------------------------~~~~~~~  203 (402)
T PRK11902        161 GNTYLLMAGLMLAGALTTLWAPEPEVPAR---PPRSLGE----------------------------------AVVGPLR  203 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCccccc---ccchhHH----------------------------------HHHHHHH
Confidence            99999988877766555566777543110   0000000                                  0013344


Q ss_pred             hhcccchhhhhhHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcCCchhHHHHHHHHH-hHHHHHHHHHHHHhhcccCChHH
Q 008137          267 GAFGNKIVRRGLYAGVTVQVAQQFVGINTVMYYSPTIVQFAGFASKSTALALSLVT-SGLNALGSIVSMAFVDKYGRRRL  345 (576)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ig~~~~g~l~dk~grr~~  345 (576)
                      +.++++..+............    .........+.+.++.+. +....+.+.... .++.+++.++++++.||+++|+.
T Consensus       204 ~l~~~~~~~~~l~~~~l~~~~----~~~~~~~~~~~l~~~~G~-~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~  278 (402)
T PRK11902        204 DFFSRRGAWALLLLIVLYKLG----DAFAGSLSTTFLIRGAGF-SAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRS  278 (402)
T ss_pred             HHHhCcCHHHHHHHHHHHHhH----HHHHHHHHHHHHHHhcCC-CHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence            556666544422222221111    111112223444444555 666666665443 44578999999999999999988


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhcCCCccccccccCCCCCCCCcccccCCCCcccccccccccccccCCCCCCCCCCcc
Q 008137          346 MIVSMFGLSSCLVALAVVFFQAAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAHKGNEYLPGAC  425 (576)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  425 (576)
                      +..+..+..+..+.+.......                                                          
T Consensus       279 l~~~~~~~~l~~l~~~~~~~~~----------------------------------------------------------  300 (402)
T PRK11902        279 LMLFGVLQAVSNLGYWVLAVTP----------------------------------------------------------  300 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcC----------------------------------------------------------
Confidence            7766665555544333221100                                                          


Q ss_pred             cccccccccccccccccccccCCCCcchhHHHHHHHHHHHHh---cCCcccccchhccccccccccccchhHHHHHHHHH
Q 008137          426 LIDEKSTDTLCSDEHRTYFISGCPSSFGWLAVVFLGAYIITY---SPGMGTAPWIVNSEIYPLRYRGVGGGIAAVSNWTS  502 (576)
Q Consensus       426 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~g  502 (576)
                                               +..+..+....+..+..   ..........++.+.+|.+.    .++.+....++
T Consensus       301 -------------------------~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~  351 (402)
T PRK11902        301 -------------------------KHLWTMALAIGIENLCGGMGTAAFVALLMALCNRSFSATQ----YALLSALASVG  351 (402)
T ss_pred             -------------------------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHH----HHHHHHHHHHH
Confidence                                     00122222222111111   11222344456666666544    45566666778


Q ss_pred             HHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHh
Q 008137          503 NLIVSLTFLTLTEALGSAGTFLLFAGFSLLGLVAIYL  539 (576)
Q Consensus       503 ~~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~  539 (576)
                      ..+++.+.|.+.|..|+...|.+.+.+++++.++.+.
T Consensus       352 ~~~~~~~~G~l~~~~G~~~~f~~~~~~~~~~~~~~~~  388 (402)
T PRK11902        352 RVYVGPTSGYLVEAYGWPGFYLMTVVIALPGLALLWL  388 (402)
T ss_pred             HHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH
Confidence            7777778999999999998888888888887666544

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.94  E-value=3.8e-24  Score=226.18  Aligned_cols=357  Identities=13%  Similarity=-0.035  Sum_probs=245.2

Q ss_pred             HHhhhhhhhhHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCch----HHHHHHHHHHHHHHHH
Q 008137           38 GLLFGYDTGVISGALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRK----ISLLGADVLFFIGAII  113 (576)
Q Consensus        38 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr----~~~~~~~~~~~i~~~~  113 (576)
                      .+........+.|.+|.+.++++.+..+.   |++.+++.++..++++++|++.||+|||    +.+.+...+.  +...
T Consensus        13 ~~~~~~~~g~~~p~l~~~l~~~g~s~~~i---G~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~~--~~~~   87 (382)
T PRK11128         13 YFGYFFAYGVFLPFWSVWLKGQGYTPETI---GLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLLF--AVAF   87 (382)
T ss_pred             HHHHHHHHHHHhhhHHHHHHhcCCCHHHH---HHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHHH--HHHH
Confidence            34455667888999999999999998888   9999999999999999999999999994    3333222222  2233


Q ss_pred             HHhcchHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHh
Q 008137          114 MAIAPQPWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFTKAPGTWRWMLGVA  193 (576)
Q Consensus       114 ~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~Wr~~f~v~  193 (576)
                      ...+++++.+++.|++.|++.+...+...+++.++  .++|+++.+......++|..+||++++.+.+..+ ||..|++.
T Consensus        88 ~~~~~~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~~~g-~~~~f~~~  164 (382)
T PRK11128         88 WFGAHSFWLLFVAIGLFNLFFSPLVPLTDALANTW--QKQIGLDYGKVRLWGSIAFVIGSALTGKLVSWFG-EQAILWIL  164 (382)
T ss_pred             HHhcccHHHHHHHHHHHHHHHcccccHHHHHHHHH--HhhccCCcchHHHHHHHHHHHHHHHHHHHHHHcC-hhHHHHHH
Confidence            44568899999999999999998999888887776  4568888899999999999999999999988877 99999988


Q ss_pred             HHHHHHHHHHHhhccCChhHHhhcCCHHHHHHHHHHhCCchhhhHHHHHHHHHHHhhhhhhcccchhhHHHhhhhcccch
Q 008137          194 GLPAVVQFGLMMMLPESPRWLYRQNKVDEARAILEKIYPADQVEEEVNLLKQSVENEKAEEGLIGKDMISRLKGAFGNKI  273 (576)
Q Consensus       194 ~~~~~~~~~~~~~l~esp~~l~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (576)
                      ++..++..+..+..||.++.    .+.++.                            ..      +...+.++.++++.
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~----~~~~~~----------------------------~~------~~~~~~~~i~~~~~  206 (382)
T PRK11128        165 TAGVASMLLGQLLRPTIMPQ----GESRQQ----------------------------ES------AGWPAWKALLKEPT  206 (382)
T ss_pred             HHHHHHHHHHHHccCCCCCc----cccccc----------------------------cc------cccchHHHHHcChh
Confidence            76555544444444543210    000000                            00      00023455566654


Q ss_pred             hhhhhHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcCCchhHHHHHHHHHhHHHHHHHHHHHHhhcccCChHHHHHHHHHH
Q 008137          274 VRRGLYAGVTVQVAQQFVGINTVMYYSPTIVQFAGFASKSTALALSLVTSGLNALGSIVSMAFVDKYGRRRLMIVSMFGL  353 (576)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dk~grr~~~~~~~~~~  353 (576)
                      .+........     ..........+.|.|.++.+. +....+.+.....+..+++.++.+++.||+++|+.+..+.++.
T Consensus       207 ~~~~~~~~~l-----~~~~~~~~~~~~~~~~~~~g~-s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~  280 (382)
T PRK11128        207 VWRFLLCVSL-----LQGSHAAYYGFSAIYWQAAGY-SASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICG  280 (382)
T ss_pred             HHHHHHHHHH-----HHHHhHhHHHHHHHHHHHCCC-CHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
Confidence            4432221111     122233444556777777666 5666677777777888888999999999999999988888877


Q ss_pred             HHHHHHHHHHHHHhhhcCCCccccccccCCCCCCCCcccccCCCCcccccccccccccccCCCCCCCCCCcccccccccc
Q 008137          354 SSCLVALAVVFFQAAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAHKGNEYLPGACLIDEKSTD  433 (576)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  433 (576)
                      .++.+++.....                                                                    
T Consensus       281 ~~~~~~~~~~~~--------------------------------------------------------------------  292 (382)
T PRK11128        281 VVRWGLMGSTTA--------------------------------------------------------------------  292 (382)
T ss_pred             HHHHHHHHhhhh--------------------------------------------------------------------
Confidence            777655543321                                                                    


Q ss_pred             cccccccccccccCCCCcchhHHHHHHHHHHHHhcCCcccccchhccccccccccccchhHHH-HHHHHHHHHHHHHHHH
Q 008137          434 TLCSDEHRTYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEIYPLRYRGVGGGIAA-VSNWTSNLIVSLTFLT  512 (576)
Q Consensus       434 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~~~g~~~-~~~~~g~~~~~~~~~~  512 (576)
                                         .|..++..++.+++++.. .+....+..+. +++.+++..+..+ ....+|..++|.+.|.
T Consensus       293 -------------------~~~~~~~~~l~g~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~  351 (382)
T PRK11128        293 -------------------LPWLIVIQILHCGTFTVC-HLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGF  351 (382)
T ss_pred             -------------------HHHHHHHHHHHHHHHHHH-HHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                               133344444444444432 23334555665 4556688888876 4456677899999999


Q ss_pred             HHHhhccchhhHHHHHHHHHHHHH
Q 008137          513 LTEALGSAGTFLLFAGFSLLGLVA  536 (576)
Q Consensus       513 l~~~~g~~~~~~~~~~~~~i~~~~  536 (576)
                      +.|..|. ..++..++++++++++
T Consensus       352 l~~~~g~-~~~~~~~~~~~~~~~~  374 (382)
T PRK11128        352 LYQHLGA-GVFWVMALVALPALFI  374 (382)
T ss_pred             HHHhccH-HHHHHHHHHHHHHHHH
Confidence            9999887 4666666666655444

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.94  E-value=3.1e-24  Score=257.36  Aligned_cols=401  Identities=12%  Similarity=0.002  Sum_probs=254.6

Q ss_pred             HHHHHHHHHhhhhhhhhHHHHHH-HHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHH---HHHH
Q 008137           31 ALSAGIGGLLFGYDTGVISGALL-YIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLG---ADVL  106 (576)
Q Consensus        31 ~~~~~l~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~---~~~~  106 (576)
                      +....++.+.+++....+..+.. .+..+.+.+  ...+.++..+++.+++.++++++|+++||+|||+++..   ..++
T Consensus        17 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~   94 (1140)
T PRK06814         17 FWTQFFGAFNDNFLKNALVILILYGLSGALGAY--NNALVTLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIG   94 (1140)
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHhccccccc--hHHHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHH
Confidence            33444555555555544443333 233333322  22334889999999999999999999999999997533   2233


Q ss_pred             HHHHHHHHHhcchHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchh
Q 008137          107 FFIGAIIMAIAPQPWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFTKAPGTW  186 (576)
Q Consensus       107 ~~i~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~W  186 (576)
                      ..+..++....+++++++++|+++|++.+...|+..+++.+++|+++|++++++.+++.++|.++||++++++....+ |
T Consensus        95 ~~~~~~~~~~~~s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~-~  173 (1140)
T PRK06814         95 IAALAIYGFHLNSVPLLFAALFLMGIHSALFGPIKYSILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATISGN-F  173 (1140)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhccc-c
Confidence            333333344458999999999999999999999999999999999999999999999999999999999999988776 9


Q ss_pred             HHHHHHhHHHHHHHHHHHhhccCChhHHhhcCCHHHHHHHHHHhCCchhhhHHHHHHHHHHHhhhhhhcccchhhHHHhh
Q 008137          187 RWMLGVAGLPAVVQFGLMMMLPESPRWLYRQNKVDEARAILEKIYPADQVEEEVNLLKQSVENEKAEEGLIGKDMISRLK  266 (576)
Q Consensus       187 r~~f~v~~~~~~~~~~~~~~l~esp~~l~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (576)
                      ++.|++.++..++.+++.+.+|+++.... ..+.+..  .                               .++....++
T Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~-------------------------------~~~~~~~~~  219 (1140)
T PRK06814        174 VILVALLMGIAVLGWLASLFIPKTGNAAP-DLKIDRN--I-------------------------------IRSTITLLK  219 (1140)
T ss_pred             HHHHHHHHHHHHHHHHHHhhCCCCCCCCC-CCeeccc--h-------------------------------HHHHHHHHH
Confidence            99996666666666666666776542100 0000000  0                               000012334


Q ss_pred             hhcccchhhhhhHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcCCchhHHHHHHHHHhHHHHHHHHHHHHhhcccCChHHH
Q 008137          267 GAFGNKIVRRGLYAGVTVQVAQQFVGINTVMYYSPTIVQFAGFASKSTALALSLVTSGLNALGSIVSMAFVDKYGRRRLM  346 (576)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dk~grr~~~  346 (576)
                      ...+++.++.     ..+..+..+.....+..+.|.|+++..+.+....+.+.....++.++|.++.|+++++..+++.+
T Consensus       220 ~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~  294 (1140)
T PRK06814        220 YAKADKRIWL-----AILGISWFWLVGAVVLSQLPLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGRITLLYV  294 (1140)
T ss_pred             HHhcCchHHH-----HHHHHHHHHHHHHHHHHHhHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeee
Confidence            4444444333     22222222333455566788888876565778888888999999999999999999888777666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhcCCCccccccccCCCCCCCCcccccCCCCcccccccccccccccCCCCCCCCCCccc
Q 008137          347 IVSMFGLSSCLVALAVVFFQAAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAHKGNEYLPGACL  426 (576)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  426 (576)
                      ..+.++..++.+.+.+............                                ....++              
T Consensus       295 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~--------------------------------~~~~~~--------------  328 (1140)
T PRK06814        295 PIGALLMGLFGLDLAFASSSVPAEPAQL--------------------------------KSILVF--------------  328 (1140)
T ss_pred             hHHHHHHHHHHHHHHhcccccccccccc--------------------------------cchhhh--------------
Confidence            5555555544443332200000000000                                000000              


Q ss_pred             ccccccccccccccccccccCCCCcchhHHHHHHHHHHHHhcCCcccccchhccccccccccccchhHHHHHHHHHHHHH
Q 008137          427 IDEKSTDTLCSDEHRTYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEIYPLRYRGVGGGIAAVSNWTSNLIV  506 (576)
Q Consensus       427 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~g~~~~  506 (576)
                                           ......|..++..++++++.+.. .+...++..+..|++.||+++|+.++...++..++
T Consensus       329 ---------------------~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig  386 (1140)
T PRK06814        329 ---------------------LSKRHGWRILIDLFGLAAAGGLY-IVPLFAALQAWANPAHRARVIAANNVLNAAFMVAG  386 (1140)
T ss_pred             ---------------------hcccccHHHHHHHHHHHHHHHHh-HHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHH
Confidence                                 00011244444444444443322 33455788899999999999999999999999999


Q ss_pred             HHHHHHHHHh-hccchhhHHHHHHHHHHHHHHHhhc
Q 008137          507 SLTFLTLTEA-LGSAGTFLLFAGFSLLGLVAIYLLV  541 (576)
Q Consensus       507 ~~~~~~l~~~-~g~~~~~~~~~~~~~i~~~~~~~~~  541 (576)
                      +++.+.+.+. .++...+++.+++.++..+..+.+.
T Consensus       387 ~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  422 (1140)
T PRK06814        387 TIILALLQALGFSIPWIILFIALANLIVAILILRLL  422 (1140)
T ss_pred             HHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHC
Confidence            9999988753 3444445544444444433333333

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.93  E-value=1.7e-23  Score=222.17  Aligned_cols=373  Identities=12%  Similarity=0.022  Sum_probs=246.2

Q ss_pred             HHHHHHhhhhhhhhHHHHHHHHH-HhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHH
Q 008137           34 AGIGGLLFGYDTGVISGALLYIK-EDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFIGAI  112 (576)
Q Consensus        34 ~~l~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~  112 (576)
                      +....++.......+.+.+|.+. +++|.+..+.   |++.+++.++..++++++|+++||+|||+.++.+.+..+++..
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~---g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~   83 (396)
T TIGR00882         7 FGLFFFLYFFIMSAYFPFFPIWLHDVNGLSKTDT---GIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGLLVLFA   83 (396)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence            33445566667777778887754 5689988888   9999999999999999999999999999999887776655443


Q ss_pred             HH---Hhcc-----hHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Q 008137          113 IM---AIAP-----QPWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFTKAPG  184 (576)
Q Consensus       113 ~~---~~~~-----~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~  184 (576)
                      ..   .+.+     .+..+++.|++.|++.+...+....+..|..  +++++..+......++|..+++++++.+.+.  
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~--  159 (396)
T TIGR00882        84 PFFIYVFGPLLQSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVS--RNSNFEYGKARMFGCVGWALCASIAGILFSI--  159 (396)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhh--hhcccccchhhhhcccHHHHHHHHHhhhhcc--
Confidence            22   2222     2344567789999988888888887777653  3345667788888899999999999988664  


Q ss_pred             hhHHHHHHhHHHHHHHHHHHhh-ccCChhHHhhcCCHHHHHHHHHHhCCchhhhHHHHHHHHHHHhhhhhhcccchhhHH
Q 008137          185 TWRWMLGVAGLPAVVQFGLMMM-LPESPRWLYRQNKVDEARAILEKIYPADQVEEEVNLLKQSVENEKAEEGLIGKDMIS  263 (576)
Q Consensus       185 ~Wr~~f~v~~~~~~~~~~~~~~-l~esp~~l~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (576)
                      +||++|++.+++.++..+..+. .||+|+... +   ++..                         +.+.+    +...+
T Consensus       160 ~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~-------------------------~~~~~----~~~~~  206 (396)
T TIGR00882       160 DPQIVFWLGSGFALILMLLLMFAKPKAPSSAT-V---ANAL-------------------------GANAS----AFSLK  206 (396)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHhCCCCchhhh-h---hccc-------------------------ccccC----CCCHH
Confidence            5999999998888776655444 344332100 0   0000                         00000    00013


Q ss_pred             HhhhhcccchhhhhhHHHHHHHHHHHHHhhHHHHhhhHHHHHhhc---CCchhHHHHHHHHHhHHHHHHHHHHHHhhccc
Q 008137          264 RLKGAFGNKIVRRGLYAGVTVQVAQQFVGINTVMYYSPTIVQFAG---FASKSTALALSLVTSGLNALGSIVSMAFVDKY  340 (576)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dk~  340 (576)
                      +.++.++++..+...     ...+.....+.....+.+.|+++..   ..+....+.......+...++.+..+++.||+
T Consensus       207 ~~~~~l~~~~~~~~~-----l~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~  281 (396)
T TIGR00882       207 LALELFRQRKFWMFV-----LYVVGVACVYDVFDQQFANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIINRI  281 (396)
T ss_pred             HHHHHHcCCcHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            345566665443221     1111122223334344566665543   22344556666777777888899999999999


Q ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccccccCCCCCCCCcccccCCCCcccccccccccccccCCCCCCC
Q 008137          341 GRRRLMIVSMFGLSSCLVALAVVFFQAAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAHKGNEY  420 (576)
Q Consensus       341 grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  420 (576)
                      +||+.+.++.++.++...++.....                                                       
T Consensus       282 g~~~~l~~~~~l~~l~~~~~~~~~~-------------------------------------------------------  306 (396)
T TIGR00882       282 GAKNALLIAGTIMSVRIIGSSFATT-------------------------------------------------------  306 (396)
T ss_pred             ccchhHHHHHHHHHHHHHHHHhcCC-------------------------------------------------------
Confidence            9999988887776666554332210                                                       


Q ss_pred             CCCcccccccccccccccccccccccCCCCcchhHHHHHHHHHHHHhcCCcccccchhccccccccccccchhH-HHHHH
Q 008137          421 LPGACLIDEKSTDTLCSDEHRTYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEIYPLRYRGVGGGI-AAVSN  499 (576)
Q Consensus       421 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~~~g~-~~~~~  499 (576)
                                                      .+..+....+.+.+.... ......+..+..|++.+++..+. .+...
T Consensus       307 --------------------------------~~~~~~~~~l~g~~~~~~-~~~~~~~~~~~~~~~~~at~~~~~~~~~~  353 (396)
T TIGR00882       307 --------------------------------ALEVVILKMLHAFEVPFL-LVGCFKYITSQFDVRLSATIYLIGFQFAK  353 (396)
T ss_pred             --------------------------------hHHHHHHHHHHHHHHHHH-HHHHHHHHHHhCCcceEEEeehHHHHHHH
Confidence                                            133233333333332211 11223355677788888887776 57889


Q ss_pred             HHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHh
Q 008137          500 WTSNLIVSLTFLTLTEALGSAGTFLLFAGFSLLGLVAIYL  539 (576)
Q Consensus       500 ~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~  539 (576)
                      .+|+++++.+.|.+.+..|+..+|.+.+++.++..++..+
T Consensus       354 ~lg~~~~~~l~G~l~~~~G~~~~f~~~~~~~~i~~~~~~~  393 (396)
T TIGR00882       354 QLAMIFLSTLAGNMYDSIGFQGAYLVLGCIVLLFTLISVF  393 (396)
T ss_pred             HHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999988888877766544

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=99.93  E-value=7.3e-23  Score=222.25  Aligned_cols=168  Identities=21%  Similarity=0.308  Sum_probs=138.9

Q ss_pred             HHHHHHHHHHhhhhhhhhHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHH
Q 008137           30 LALSAGIGGLLFGYDTGVISGALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFI  109 (576)
Q Consensus        30 ~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i  109 (576)
                      .+...++.....++.....+.+++.+.+|+|.++..    .|+.+...++.+++.++.|+++|.||||.+++++.++..+
T Consensus        45 ~~~~~~~~~~~~~~~~~~~a~~l~~I~~diG~~~~~----~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vv  120 (599)
T PF06609_consen   45 SFAAFSLAVIAAYFVLVLPASILPYINADIGGSDNW----SWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVV  120 (599)
T ss_pred             HHHHHHHHHHHHHHHHhccHHHHHHHHHhcCCCccc----hHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHh
Confidence            333445555555666677788889999999987554    6788899999999999999999999999999999999999


Q ss_pred             HHHHHHhcchHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHH
Q 008137          110 GAIIMAIAPQPWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFTKAPGTWRWM  189 (576)
Q Consensus       110 ~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~Wr~~  189 (576)
                      |+++++.++|...++++..+.|+|.|.... ....++|..|.|.|....++..........+++.++..+.... +|||.
T Consensus       121 G~Iv~atA~~~~~~iag~~l~GvgaG~~~~-~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~-~WRw~  198 (599)
T PF06609_consen  121 GSIVCATAQNMNTFIAGMVLYGVGAGVQEL-AALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAHS-GWRWI  198 (599)
T ss_pred             HHHHhhcCCcHHHHHHHHHHHHHhhHHHHH-HHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccCC-CcchH
Confidence            999999999999999999999999887665 5566899999999988887777666555667788877766554 49999


Q ss_pred             HHHhHHHHHHHHHH
Q 008137          190 LGVAGLPAVVQFGL  203 (576)
Q Consensus       190 f~v~~~~~~~~~~~  203 (576)
                      |++.++...+.+++
T Consensus       199 ~~~~~i~~~i~~vl  212 (599)
T PF06609_consen  199 FYIFIIWSGIALVL  212 (599)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99998887776555

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>TIGR00901 2A0125 AmpG-related permease

Probab=99.92  E-value=5.2e-23  Score=215.11  Aligned_cols=274  Identities=11%  Similarity=0.054  Sum_probs=193.7

Q ss_pred             hhhhHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhcc-----CchHH-HHHHHHHHHHHHHHHHhc
Q 008137           44 DTGVISGALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRF-----GRKIS-LLGADVLFFIGAIIMAIA  117 (576)
Q Consensus        44 ~~~~~~~~~~~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~-----Grr~~-~~~~~~~~~i~~~~~~~~  117 (576)
                      ....+++.+|.+.+|+|.+..+.   |++.+. .+...+ .+++|++.||+     |||+. ++.+.++.+++....++.
T Consensus         3 ~~~~~~~~~~~~~~~~g~s~~~~---g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~   77 (356)
T TIGR00901         3 PLGLVGNTLPYWLRSKNVSLKTI---GFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFL   77 (356)
T ss_pred             CchhHHhHHHHHHHHcCCCHHHH---HHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcC
Confidence            34567788999999999999888   888655 455555 89999999998     89886 567788888887777787


Q ss_pred             ---chHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCc-------hhH
Q 008137          118 ---PQPWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFTKAPG-------TWR  187 (576)
Q Consensus       118 ---~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~-------~Wr  187 (576)
                         .+.+.+....++.+++.+...+...+++.|++|+++|+++.++...+..+|.++++.+++.+....+       +||
T Consensus        78 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr  157 (356)
T TIGR00901        78 VPSTDLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWG  157 (356)
T ss_pred             CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccH
Confidence               4667777888899999999999999999999999999999999999999999999999988876654       299


Q ss_pred             HHHHHhHHHHHHHHHHHhh-ccCChhHHhhcCCHHHHHHHHHHhCCchhhhHHHHHHHHHHHhhhhhhcccchhhHHHhh
Q 008137          188 WMLGVAGLPAVVQFGLMMM-LPESPRWLYRQNKVDEARAILEKIYPADQVEEEVNLLKQSVENEKAEEGLIGKDMISRLK  266 (576)
Q Consensus       188 ~~f~v~~~~~~~~~~~~~~-l~esp~~l~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (576)
                      +.|++.++..++.++..++ .||+++.   +.+.++..+                                  +.....+
T Consensus       158 ~~f~i~ai~~l~~~~~~~~~~~e~~~~---~~~~~~~~~----------------------------------~~~~~~~  200 (356)
T TIGR00901       158 YIFFWTALLILPGLLVTLFLAKEPQED---ASVPKPLTQ----------------------------------AVLKPIR  200 (356)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccCCCcc---cccchhHHH----------------------------------HHHHHHH
Confidence            9999998887776655443 4664221   000000000                                  0002233


Q ss_pred             hhcccchhhhhhHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcCCchhHHHHHHHHH-hHHHHHHHHHHHHhhcccCChHH
Q 008137          267 GAFGNKIVRRGLYAGVTVQVAQQFVGINTVMYYSPTIVQFAGFASKSTALALSLVT-SGLNALGSIVSMAFVDKYGRRRL  345 (576)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ig~~~~g~l~dk~grr~~  345 (576)
                      +.++++..+. .+. .....+...........+.|.|+++.+. +..+.+.+.... .+..+++.++++++.||+|||+.
T Consensus       201 ~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~g~-~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~  277 (356)
T TIGR00901       201 EFFQRKNMIQ-ALL-LLLLIVLYKLGDSAATVLTTLFLLDMGF-SKEEIALVAKINGLLGAILGGLIGGIIMQPLNILYA  277 (356)
T ss_pred             HHHHhcCchH-HHH-HHHHHHHHHHHHHHHHHHHHHHHHHcCC-CHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence            3444433222 122 2222222334445666777888887655 556666555443 35678999999999999999998


Q ss_pred             HHHHHHHHHHHHHHHHH
Q 008137          346 MIVSMFGLSSCLVALAV  362 (576)
Q Consensus       346 ~~~~~~~~~~~~~~~~~  362 (576)
                      +..++++..+...++.+
T Consensus       278 l~~~~~~~~~~~~~~~~  294 (356)
T TIGR00901       278 LLLFGIVQALTNAGFVW  294 (356)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            88877776666554443

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.92  E-value=1.9e-22  Score=219.50  Aligned_cols=373  Identities=15%  Similarity=0.120  Sum_probs=271.6

Q ss_pred             HHHHHHHhhhhhhhhHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHH
Q 008137           33 SAGIGGLLFGYDTGVISGALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFIGAI  112 (576)
Q Consensus        33 ~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~  112 (576)
                      .+.++.++..+...+....++-+..+...++...   +++.++..+...+.++++|.++||+.||++++.+.++..+..+
T Consensus        14 ~lw~a~~iS~lG~~~~~va~~wlv~~lt~S~~~v---alv~~a~~LP~~Llsl~aG~laDr~drrrili~~~~~~~~~~~   90 (524)
T PF05977_consen   14 RLWIAQLISNLGDWMQTVALAWLVTQLTGSPLMV---ALVQAASTLPILLLSLFAGALADRFDRRRILILSQLLRALVAL   90 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHH---HHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHH
Confidence            3456666667777777777777777776666666   9999999999999999999999999999999999988876665


Q ss_pred             HHHhc-----chHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhH
Q 008137          113 IMAIA-----PQPWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFTKAPGTWR  187 (576)
Q Consensus       113 ~~~~~-----~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~Wr  187 (576)
                      +.++.     .+++.+++.-++.|++.+...|.-.+++.|..|+++...+.++.+...++..++||.++|.+....| -.
T Consensus        91 ~L~~l~~~~~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~Lva~~G-~~  169 (524)
T PF05977_consen   91 LLAVLAFFGLLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGILVAFFG-AA  169 (524)
T ss_pred             HHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHHHHHHH-HH
Confidence            54442     4789999999999999999999999999999999999999999999999999999999999887666 78


Q ss_pred             HHHHHhHHHHHHHHHHHhhccCChhHHhhcCCHHHHHHHHHHhCCchhhhHHHHHHHHHHHhhhhhhcccchhhHHHhhh
Q 008137          188 WMLGVAGLPAVVQFGLMMMLPESPRWLYRQNKVDEARAILEKIYPADQVEEEVNLLKQSVENEKAEEGLIGKDMISRLKG  267 (576)
Q Consensus       188 ~~f~v~~~~~~~~~~~~~~l~esp~~l~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (576)
                      +.|++.++..++.+.....++..++.  ++...+.   .                               .++....++-
T Consensus       170 ~~f~inalsfl~~i~~l~~~~~~~~~--~~~~~e~---~-------------------------------~~~l~~G~ry  213 (524)
T PF05977_consen  170 AAFLINALSFLISILALLRWKPPPPP--SSLPRER---F-------------------------------FSALREGLRY  213 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHHccccccc--cccchhh---h-------------------------------hhhHHHHHHH
Confidence            88988877655554444444332110  0000000   0                               0001122233


Q ss_pred             hcccchhhhhhHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcCCchhHHHHHHHHHhHHHHHHHHHHHHhhcccCChHHHH
Q 008137          268 AFGNKIVRRGLYAGVTVQVAQQFVGINTVMYYSPTIVQFAGFASKSTALALSLVTSGLNALGSIVSMAFVDKYGRRRLMI  347 (576)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dk~grr~~~~  347 (576)
                      ..+++..+..++....    +.+ ........+|.+.++..+.+....+++....++++++|+++.+++.+|+++++++.
T Consensus       214 v~~~~~l~~~l~~~~~----~~l-~~~a~~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~  288 (524)
T PF05977_consen  214 VRSSPPLRSVLLRSFL----FNL-FASAVWALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVL  288 (524)
T ss_pred             HhcchHHHHHHHHHHH----HHH-hhhHHHHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhH
Confidence            3334433332221111    111 12333445788887766657888899999999999999999999999999998888


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhcCCCccccccccCCCCCCCCcccccCCCCcccccccccccccccCCCCCCCCCCcccc
Q 008137          348 VSMFGLSSCLVALAVVFFQAAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAHKGNEYLPGACLI  427 (576)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  427 (576)
                      .+.++.+++.+.+++...                                                              
T Consensus       289 ~~~~~~a~~~~~lal~~~--------------------------------------------------------------  306 (524)
T PF05977_consen  289 LASLLFALALLLLALSPS--------------------------------------------------------------  306 (524)
T ss_pred             HHHHHHHHHHHHHhcchH--------------------------------------------------------------
Confidence            888877777666655432                                                              


Q ss_pred             cccccccccccccccccccCCCCcchhHHHHHHHHHHHHhcCCcccccchhccccccccccccchhHHHHHHHHHHHHHH
Q 008137          428 DEKSTDTLCSDEHRTYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEIYPLRYRGVGGGIAAVSNWTSNLIVS  507 (576)
Q Consensus       428 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~g~~~~~  507 (576)
                                               .|.....+++.+.+.... .....+...+..|++.||++++++.+....+..++.
T Consensus       307 -------------------------~~~~~~~l~l~G~~~~~~-~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGs  360 (524)
T PF05977_consen  307 -------------------------FWLALIALFLAGAAWIIA-NSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGS  360 (524)
T ss_pred             -------------------------HHHHHHHHHHHHHHHHHH-HHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHH
Confidence                                     144444444444444322 233446678889999999999999999999999999


Q ss_pred             HHHHHHHHhhccchhhHHHHHHHHHHHHHHH
Q 008137          508 LTFLTLTEALGSAGTFLLFAGFSLLGLVAIY  538 (576)
Q Consensus       508 ~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~~  538 (576)
                      .+.|.+.+..|...++.+.++..+++.++.+
T Consensus       361 ll~G~la~~~g~~~al~~a~~~lll~~~~~~  391 (524)
T PF05977_consen  361 LLWGFLADHFGVRTALLIAGAALLLSALIAL  391 (524)
T ss_pred             HHHHHHHHHhCHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999998888777766666555543

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=99.92  E-value=2e-24  Score=233.93  Aligned_cols=421  Identities=14%  Similarity=0.111  Sum_probs=296.3

Q ss_pred             hchhhHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHH
Q 008137           22 WTTPYIMKLALSAGIGGLLFGYDTGVISGALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLL  101 (576)
Q Consensus        22 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~  101 (576)
                      +...+-|.+++...+..+...--...++.+.+.++++|+.+.++.   +|+.++......+..++.+.+.||||.|.+.+
T Consensus        39 PdGG~gWvV~~a~fl~~~~~~g~~~~~Gv~~~~~~~~f~~s~~~~---~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i  115 (509)
T KOG2504|consen   39 PDGGWGWVVVFASFLVNLSTDGLINSFGLLFEELMDYFGSSSSQI---AWIGSLLLGVYLLAGPLVSALCNRFGCRTVMI  115 (509)
T ss_pred             CCCCeeeeeeHhHHHHHHhhhcchheehhhHHHHHHHhCCCccHH---HHHHHHHHHHHHHhccHHHHHHhhcCchHHHH
Confidence            366788888888877777766666777889999999999998887   99999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhcchHHHHHHHH-HHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 008137          102 GADVLFFIGAIIMAIAPQPWVIILGR-IFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFT  180 (576)
Q Consensus       102 ~~~~~~~i~~~~~~~~~~~~~l~~~R-~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~  180 (576)
                      .|.++.++|.++.+|++++|++++.- ++.|+|.|+.+..+...+..|| +|+|+.|.|+...+.++|.++-|++...+.
T Consensus       116 ~G~~v~~~g~~lssF~~~i~~l~lt~gvi~G~G~~~~~~paiviv~~YF-~kkR~lA~Gia~~GsG~G~~~~~~l~~~l~  194 (509)
T KOG2504|consen  116 AGGLVAALGLLLSSFATSLWQLYLTFGVIGGLGLGLIYLPAVVILGTYF-EKKRALATGIAVSGTGVGTVVFPPLLKYLL  194 (509)
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhccchhhhcchhhhhhhHh-HHHHHHHHhhhhccCCcceeeHHHHHHHHH
Confidence            99999999999999999999988766 9999999999999999999888 567999999999999999999999999999


Q ss_pred             CCCchhHHHHHHhHHHHHHHHHHHhhc-cCChhHHhhcCCHHHHHHHHHHhCCchhhhHHHHH------HH-H--HHHhh
Q 008137          181 KAPGTWRWMLGVAGLPAVVQFGLMMML-PESPRWLYRQNKVDEARAILEKIYPADQVEEEVNL------LK-Q--SVENE  250 (576)
Q Consensus       181 ~~~~~Wr~~f~v~~~~~~~~~~~~~~l-~esp~~l~~~~~~~~~~~~l~~i~~~~~~~~~~~~------~~-~--~~~~~  250 (576)
                      +..| ||+.+++.+.+.+-.+..-..+ |.+++....   ..+..+.............+...      .. .  .....
T Consensus       195 ~~~G-~r~~~l~~~~~~l~~~~~~~~~rp~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (509)
T KOG2504|consen  195 SKYG-WRGALLIFGGISLNVLVAGALLRPLSPPKKPN---EEKDLRNSAASVESTPKPVELRISERDSGLKKLSLSNLAT  270 (509)
T ss_pred             HHhC-cHHHHHHHHHHHHHHHHHHHHcCCCCcCCCch---hhhhhccccccccccccccccccccCCCCCCcccccchhh
Confidence            9888 9999999888886666554433 433221111   00000000000000000000000      00 0  00000


Q ss_pred             hhhhcccch-hhHHHhhhhcccchhhhhhHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcCCchhHHHHHHHHHhHHHHHH
Q 008137          251 KAEEGLIGK-DMISRLKGAFGNKIVRRGLYAGVTVQVAQQFVGINTVMYYSPTIVQFAGFASKSTALALSLVTSGLNALG  329 (576)
Q Consensus       251 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig  329 (576)
                      ....+...+ ...+.....+..+.++.+.++.+.....+...++.....++|.+....+. +...+..+....++..+++
T Consensus       271 ~~~~~~~~~~~~~~~~~~~~d~~ll~~~~fl~~~~~~~~~~~g~~~p~~~l~~~~~~~g~-~~~~aa~l~Siigi~~i~g  349 (509)
T KOG2504|consen  271 LKRGPDKWRNSPLQAFLSMLDLSLLKDPKFLLLALSNLFAYLGFNVPFVYLPSYAKSLGL-SSNDAAFLLSIIGVSDIIG  349 (509)
T ss_pred             hhhCCccccccchhhhhhhhhHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-ChhhhHHHHHHHHHhhhhh
Confidence            000000000 00011111223445555677778888888888889999999999997777 6677777778889999999


Q ss_pred             HHHHHHhhcccCChH--HHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccccccCCCCCCCCcccccCCCCccccccccc
Q 008137          330 SIVSMAFVDKYGRRR--LMIVSMFGLSSCLVALAVVFFQAAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLK  407 (576)
Q Consensus       330 ~~~~g~l~dk~grr~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  407 (576)
                      +++.|++.|+...++  +..++.++.+++.+.+.....                                          
T Consensus       350 Ri~~G~laD~~~~~~~~~~~~~ll~~gl~~~~~p~~~~------------------------------------------  387 (509)
T KOG2504|consen  350 RIILGLLADKPGIRALVLFLLTLLIAGLARLFLPFATT------------------------------------------  387 (509)
T ss_pred             hhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHhcc------------------------------------------
Confidence            999999999988433  333444444444322222211                                          


Q ss_pred             ccccccCCCCCCCCCCcccccccccccccccccccccccCCCCcchhHHHHHHHHHHHHhcCCcccccchhccccccccc
Q 008137          408 AKCGFCAHKGNEYLPGACLIDEKSTDTLCSDEHRTYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEIYPLRY  487 (576)
Q Consensus       408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~  487 (576)
                                                                   .+..+....+++...+ .........+.|+.+.+.
T Consensus       388 ---------------------------------------------~~~l~~~~~~fG~~~g-~~~~l~~~i~~~~~g~~~  421 (509)
T KOG2504|consen  388 ---------------------------------------------YVGLIVFSILFGFCVG-SFSSLTPVILVDLVGLEK  421 (509)
T ss_pred             ---------------------------------------------HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHcChhh
Confidence                                                         0222222333322222 333344457789999999


Q ss_pred             cccchhHHHHHHHHHHHHHHHHHHHHHHhhc-cchhhHHHHHHHHHHHHHHHh
Q 008137          488 RGVGGGIAAVSNWTSNLIVSLTFLTLTEALG-SAGTFLLFAGFSLLGLVAIYL  539 (576)
Q Consensus       488 rg~~~g~~~~~~~~g~~~~~~~~~~l~~~~g-~~~~~~~~~~~~~i~~~~~~~  539 (576)
                      -..+.|+...+..++..++|++.|.+.|..| |...|+..+...+++.+..++
T Consensus       422 l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f~~~g~~~~~s~~~~~~  474 (509)
T KOG2504|consen  422 LSNAYGLLLLFQGIGALVGPPIAGLLYDITGNYDHAFYFCGLCFLLSAVLLLI  474 (509)
T ss_pred             cchHHHHHHHHhHHHHHcCcccceeeeeccCCeeeehhhcChHHHHHHHHHHH
Confidence            9999999999999999999999999999887 777888888887777765433

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.92  E-value=9.6e-23  Score=218.93  Aligned_cols=346  Identities=14%  Similarity=0.079  Sum_probs=232.7

Q ss_pred             hhhhhhHHH-HHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhc----cCch-HHHHHHHHHHHHHHHHHH
Q 008137           42 GYDTGVISG-ALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDR----FGRK-ISLLGADVLFFIGAIIMA  115 (576)
Q Consensus        42 ~~~~~~~~~-~~~~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr----~Grr-~~~~~~~~~~~i~~~~~~  115 (576)
                      ......+.+ +.+.+.+++|.+....   |++.++..+..++.+++.|+++||    +||| +.++++...++++.+++.
T Consensus        12 ~~~~~~~~~~l~~~~~~~~g~s~~~~---g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~   88 (437)
T TIGR00792        12 NFIFAIVSTYLLFFYTDVLGLSAAFV---GTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLF   88 (437)
T ss_pred             HHHHHHHHHHHHHHHHHccCCCHHHH---HHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHH
Confidence            333344444 4455667889988888   999999999999999999999997    6874 567788888888888887


Q ss_pred             hcch------HHHHHHHHHHHHhhhhhhhhhHHHHHHhcc-CcchhhHHHHHHHHHHHHHHHHHHHHHHHhcC------C
Q 008137          116 IAPQ------PWVIILGRIFVGLGVGMASMTAPLYISEAS-PAKIRGALVSANGFLITGGQFLAYLINLAFTK------A  182 (576)
Q Consensus       116 ~~~~------~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~-~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~------~  182 (576)
                      +.++      .+.+++.+++.+++.+...+...++..|.. ++++|+++.++.+.+..+|..++..+.+.+..      .
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~  168 (437)
T TIGR00792        89 TTPDFSATGKLVYAYITYILLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDD  168 (437)
T ss_pred             hCCCCCcchHHHHHHHHHHHHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence            7654      456778889999988887777788888887 57899999999998888888777665544432      1


Q ss_pred             CchhHHHHHHhHHHHHHHHHH-HhhccCChhHHhhcCCHHHHHHHHHHhCCchhhhHHHHHHHHHHHhhhhhhcccchhh
Q 008137          183 PGTWRWMLGVAGLPAVVQFGL-MMMLPESPRWLYRQNKVDEARAILEKIYPADQVEEEVNLLKQSVENEKAEEGLIGKDM  261 (576)
Q Consensus       183 ~~~Wr~~f~v~~~~~~~~~~~-~~~l~esp~~l~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (576)
                      ..+||+.+++.++++++..+. ++..+|+++..  +.+ ++                               +   ..+.
T Consensus       169 ~~g~~~~~~i~~~l~~~~~~~~~~~~~e~~~~~--~~~-~~-------------------------------~---~~~~  211 (437)
T TIGR00792       169 KFGWFMFALVLALIGVVSLIICFFGTKERYSEI--PKN-IE-------------------------------K---KLSL  211 (437)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHcCCEecCCCC--Ccc-cc-------------------------------c---CCCH
Confidence            125999999999888776655 45566654210  000 00                               0   0011


Q ss_pred             HHHhhhhcccchhhhhhHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcCCchhHHHHHHHHHhHHHHHHHHHHHHhhcccC
Q 008137          262 ISRLKGAFGNKIVRRGLYAGVTVQVAQQFVGINTVMYYSPTIVQFAGFASKSTALALSLVTSGLNALGSIVSMAFVDKYG  341 (576)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dk~g  341 (576)
                      .+..+..++++.++...     ...+...........+.+++.+.... +....+.+.....++.+++.++.++++||+|
T Consensus       212 ~~~~~~l~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g  285 (437)
T TIGR00792       212 KQIFKALFKNDQLLILC-----LAYLFYNLAFNIKNGVQVYYFTYVLG-DPELFSYMGSIAIVAGLIGVLLFPRLVKKFG  285 (437)
T ss_pred             HHHHHHHhCCHHHHHHH-----HHHHHHHHHHHHHcchhheeEeeecC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            13345556665544322     22222222333334445555554443 3445555566668888999999999999999


Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccccccCCCCCCCCcccccCCCCcccccccccccccccCCCCCCCC
Q 008137          342 RRRLMIVSMFGLSSCLVALAVVFFQAAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAHKGNEYL  421 (576)
Q Consensus       342 rr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  421 (576)
                      +|+.+..+.++.+++.+.+.+...                                                        
T Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------------------------------  309 (437)
T TIGR00792       286 RKILFAGGILLMVLGYLIFFFAGS--------------------------------------------------------  309 (437)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHcch--------------------------------------------------------
Confidence            999998887777766655443210                                                        


Q ss_pred             CCcccccccccccccccccccccccCCCCcchhHHHHHHHHHHHHhcCCcccccchhcccccc-------ccccccchhH
Q 008137          422 PGACLIDEKSTDTLCSDEHRTYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEIYP-------LRYRGVGGGI  494 (576)
Q Consensus       422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p-------~~~rg~~~g~  494 (576)
                                                    ..+..++...+.+++.+. ..+..+++.+|..+       ++.+|...|+
T Consensus       310 ------------------------------~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~  358 (437)
T TIGR00792       310 ------------------------------NLPLILVLIILAGFGQNF-VTGLVWALVADTVDYGEWKTGVRAEGLVYSV  358 (437)
T ss_pred             ------------------------------hHHHHHHHHHHHHHHHHH-HHHHHHHHHhhhhhhhhhhcCccchHHHHHH
Confidence                                          012223333333333332 23455667777654       5667999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhccc
Q 008137          495 AAVSNWTSNLIVSLTFLTLTEALGSA  520 (576)
Q Consensus       495 ~~~~~~~g~~~~~~~~~~l~~~~g~~  520 (576)
                      .+....+|..+++.+.|.+.+..|+.
T Consensus       359 ~~~~~~~g~~lg~~i~g~ll~~~G~~  384 (437)
T TIGR00792       359 RTFVRKLGQALAGFLVGLILGIIGYV  384 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            99999999999999999999887763

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=99.92  E-value=2.8e-22  Score=203.14  Aligned_cols=368  Identities=14%  Similarity=0.071  Sum_probs=271.7

Q ss_pred             HHHHHHHHHHhhhhhhhhHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHH
Q 008137           30 LALSAGIGGLLFGYDTGVISGALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFI  109 (576)
Q Consensus        30 ~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i  109 (576)
                      ....++...++.++......+++|.+++.|+.+..+.   +++..+++.++.+.+++.|++.+|+|+|+.+++++.++++
T Consensus        14 ~~v~~t~lFfl~G~~~~l~diLip~l~~~f~ls~~~a---~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~av   90 (422)
T COG0738          14 AFVLLTSLFFLWGFITCLNDILIPHLKEVFDLTYFEA---SLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAV   90 (422)
T ss_pred             HHHHHHHHHHHHHHHhhcchhhHHHHHHHhCccHHHH---HHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHH
Confidence            3444555667788889999999999999999999999   9999999999999999999999999999999999999999


Q ss_pred             HHHHHH---hcchHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhcCC----
Q 008137          110 GAIIMA---IAPQPWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFTKA----  182 (576)
Q Consensus       110 ~~~~~~---~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~----  182 (576)
                      ++.+..   ...++..++++-|+.|.|.+.....+..+++...++++..+.+++.+...++|.+++|++++.+...    
T Consensus        91 g~~lF~pAa~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils~~~~  170 (422)
T COG0738          91 GAALFWPAASSKSYGFFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILSGVAL  170 (422)
T ss_pred             HHHHHhhhhhhhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhh
Confidence            999884   5678999999999999999999999999999999998889999999999999999999999988762    


Q ss_pred             --------------CchhHHHHHHhHHHHHHHHHHHhh--ccCChhHHhhcCCHHHHHHHHHHhCCchhhhHHHHHHHHH
Q 008137          183 --------------PGTWRWMLGVAGLPAVVQFGLMMM--LPESPRWLYRQNKVDEARAILEKIYPADQVEEEVNLLKQS  246 (576)
Q Consensus       183 --------------~~~Wr~~f~v~~~~~~~~~~~~~~--l~esp~~l~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~  246 (576)
                                    ...||++|...+...++..+....  .|+.+....++.+.+.                        
T Consensus       171 ~~~~~~~~~~~~~~~~~v~~pYl~~~~~lvll~v~~~~~k~p~~~~~~~~~~~~~~------------------------  226 (422)
T COG0738         171 TMSAAQILAIKGADASSVQFPYLILAGLLVLLAVLILLSKLPDLQVAAPSLGASGS------------------------  226 (422)
T ss_pred             ccCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccCCcCCccccccccccc------------------------
Confidence                          124888888877776666655444  3443211000000000                        


Q ss_pred             HHhhhhhhcccchhhHHHhhhhcccchhhhhhHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcCCchhHHHHHHHHHhHHH
Q 008137          247 VENEKAEEGLIGKDMISRLKGAFGNKIVRRGLYAGVTVQVAQQFVGINTVMYYSPTIVQFAGFASKSTALALSLVTSGLN  326 (576)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  326 (576)
                                      ....+.++++..+...+..++     ....-.....|++.|+.+..+.+..++........++.
T Consensus       227 ----------------~~~~~l~~~~~~~~gvl~~Fl-----YVG~Eva~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~  285 (422)
T COG0738         227 ----------------AGLSSLFQNKHLRLGVLAIFL-----YVGAEVAIGSFLVSYLEELLGLNEQQAAYYLSFFWVGF  285 (422)
T ss_pred             ----------------chHHHHHhChHHHHHHHHHHH-----HHhHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHH
Confidence                            124455666655543333222     22234455667788888866668888888889999999


Q ss_pred             HHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccccccCCCCCCCCcccccCCCCcccccccc
Q 008137          327 ALGSIVSMAFVDKYGRRRLMIVSMFGLSSCLVALAVVFFQAAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCL  406 (576)
Q Consensus       327 ~ig~~~~g~l~dk~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  406 (576)
                      ++|++++.++..|+...|.+....++..+.++...+...                                         
T Consensus       286 ~vGRFig~~lm~~~~~~k~Laf~a~~~ill~~~~~l~~g-----------------------------------------  324 (422)
T COG0738         286 MVGRFIGSALMSRIKPEKYLAFYALIAILLLLAVALIGG-----------------------------------------  324 (422)
T ss_pred             HHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHhcC-----------------------------------------
Confidence            999999999999999888877666554444444443311                                         


Q ss_pred             cccccccCCCCCCCCCCcccccccccccccccccccccccCCCCcchhHHHHHHHHHHHHhcCCcccccchhcccccccc
Q 008137          407 KAKCGFCAHKGNEYLPGACLIDEKSTDTLCSDEHRTYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEIYPLR  486 (576)
Q Consensus       407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~  486 (576)
                                                                     ...+....+.+.+. ..+.|..++...+..| +
T Consensus       325 -----------------------------------------------~v~~~~l~~ig~F~-simfPTIfslal~~l~-~  355 (422)
T COG0738         325 -----------------------------------------------VVALYALFLIGLFN-SIMFPTIFSLALKNLG-E  355 (422)
T ss_pred             -----------------------------------------------hHHHHHHHHHHHHh-HHHHHHHHHHHHhccC-c
Confidence                                                           22233333333333 3556777788888888 4


Q ss_pred             ccccchhHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHH
Q 008137          487 YRGVGGGIAAVSNWTSNLIVSLTFLTLTEALGSAGTFLLFAGFSLLGLVA  536 (576)
Q Consensus       487 ~rg~~~g~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~~  536 (576)
                      ....+.+ .....-+|+++.|.+.|++.|..|....+.....+|.+-.++
T Consensus       356 ~ts~~s~-~l~maivGGAiiP~l~G~i~d~~g~~~~~~~~pllc~lyV~~  404 (422)
T COG0738         356 HTSVGSG-LLVMAIVGGAIIPPLQGVIADMFGIQLTFLIVPLLCYLYVLF  404 (422)
T ss_pred             cccccce-eeeeheecchHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence            4444444 344577889999999999999999887776555555554433

>TIGR00806 rfc RFC reduced folate carrier

Probab=99.92  E-value=8.8e-23  Score=213.59  Aligned_cols=293  Identities=14%  Similarity=0.051  Sum_probs=199.2

Q ss_pred             HHHHHHHhhhhhhhhHHHHHHHHHHhhccchhh-hHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHH
Q 008137           33 SAGIGGLLFGYDTGVISGALLYIKEDFRDVEKK-TWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFIGA  111 (576)
Q Consensus        33 ~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~  111 (576)
                      .+|+-.|+.. -+...+.+.|.+.+++|+++.+ .   |.+.++++.++++++++.|+++||+|.|+++.++.+.+++.+
T Consensus        31 ~lC~fGF~~e-~R~n~s~a~p~L~~elglT~~qv~---G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t  106 (511)
T TIGR00806        31 YLCFYGFMAQ-FRPGESFITPYLLTVLNFTEETVT---NEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVW  106 (511)
T ss_pred             HHHHHHHHHH-hhchHHHHHHHHHHHcCCCHHHhc---chHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHH
Confidence            3455444443 3566778889999999999998 6   999999999999999999999999999999999999999999


Q ss_pred             HHHHhcchHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHH
Q 008137          112 IIMAIAPQPWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFTKAPGTWRWMLG  191 (576)
Q Consensus       112 ~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~Wr~~f~  191 (576)
                      +++++++++..+.+.|++.|++.|+.+ ....++..|+|+++|+++.++...+..+|.++++++++++. ..+ ||+.+.
T Consensus       107 ~L~~fa~Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll~-s~g-Wr~y~~  183 (511)
T TIGR00806       107 LLLLLGTSVWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLLV-TLG-WISYST  183 (511)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcC-chhHHH
Confidence            999999999999999999999999999 99999999999999999999999999999999999999954 444 998665


Q ss_pred             HhH---HHHHHHHHHHhhccCChhHHhhcCCHHHHHHHHHHhCCchhhhHHHHHHHHHHHhhhhhhcccchhhHHHhhhh
Q 008137          192 VAG---LPAVVQFGLMMMLPESPRWLYRQNKVDEARAILEKIYPADQVEEEVNLLKQSVENEKAEEGLIGKDMISRLKGA  268 (576)
Q Consensus       192 v~~---~~~~~~~~~~~~l~esp~~l~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (576)
                      +..   ....+.++..+++|..++.+.-+++.+.......+.......+.     .......+.......+.++.++++.
T Consensus       184 Ln~Isl~s~~~a~~~a~~LP~~~~sl~f~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~~~~~~  258 (511)
T TIGR00806       184 LNIISLVFMTFSVFLALFLKRPKRSLFFNRLEDVRGALPCELDQMVPGPG-----GKLEDYLGTCRDSFLVRMLSELVTI  258 (511)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCchhhhhccccccccccccccccCCCCCc-----cccchhhhhhhhHHHHHHHHHHHHH
Confidence            532   22333445566788555533322211000000000000000000     0000000000011123445667777


Q ss_pred             cccchhhhhhHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcCCchhHHHHHHHHHhHHHHHHHHHHHHhhcccCC
Q 008137          269 FGNKIVRRGLYAGVTVQVAQQFVGINTVMYYSPTIVQFAGFASKSTALALSLVTSGLNALGSIVSMAFVDKYGR  342 (576)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dk~gr  342 (576)
                      .+++...+..++..+     ...++..+..|...+.++.....+..-|..-.+..+.+.++++..|++-.+..+
T Consensus       259 y~n~~vl~WSlWwa~-----a~~g~~qv~~Y~Q~LW~~v~~~~~~yNG~veA~~tllga~~a~~ag~~~~~w~~  327 (511)
T TIGR00806       259 YRNPQLLLWSLWWVF-----NSAGYYLITYYVHTLWGTLDESLNKYNGAVDAASTLLGAITSFIAGFVNIRWAR  327 (511)
T ss_pred             hcCcchhhhhHHHHH-----HhhHHHHHHHHHHHHHHHcCCCccccCCHHHHHHHHHHHHHHHHHHhhcCCchh
Confidence            777766554444333     333456666666666655533222244455566666778888889988655533

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=99.92  E-value=3.4e-22  Score=217.07  Aligned_cols=417  Identities=13%  Similarity=0.075  Sum_probs=258.4

Q ss_pred             HHHHHHHHhhhhhhhhHHHHHHHHHHh---hccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhc-cCchHHHHHHHHHH
Q 008137           32 LSAGIGGLLFGYDTGVISGALLYIKED---FRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDR-FGRKISLLGADVLF  107 (576)
Q Consensus        32 ~~~~l~~~~~~~~~~~~~~~~~~i~~~---~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr-~Grr~~~~~~~~~~  107 (576)
                      ..+.+..+.+.+..+...+.+|.+.++   +|.+..+.   +++.+.+.++..++++++|+++|| +|||++++++.+++
T Consensus        13 ~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~a---g~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~   89 (475)
T TIGR00924        13 FTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQA---FIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVL   89 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHH---HHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHH
Confidence            344456666777777777778877554   88888888   999999999999999999999999 89999999999999


Q ss_pred             HHHHHHHHhcchHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcch---hhHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Q 008137          108 FIGAIIMAIAPQPWVIILGRIFVGLGVGMASMTAPLYISEASPAKI---RGALVSANGFLITGGQFLAYLINLAFTKAPG  184 (576)
Q Consensus       108 ~i~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~---R~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~  184 (576)
                      +++.++.+++++++.+.++|++.|+|.|...+...++++|++|+++   |+.+.++++.+.++|.++|+++++++.+..+
T Consensus        90 ~~g~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g  169 (475)
T TIGR00924        90 MLGHFMLAMSIYPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAENYG  169 (475)
T ss_pred             HHHHHHHHhcccHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            9999999999999999999999999999999999999999998764   8889999999999999999999999988776


Q ss_pred             hhHHHHHHhHHHHHHHHHHHhhcc----CChhHHhhcCCHHHHHHHHHH---------------hCCchhhhHHHHH---
Q 008137          185 TWRWMLGVAGLPAVVQFGLMMMLP----ESPRWLYRQNKVDEARAILEK---------------IYPADQVEEEVNL---  242 (576)
Q Consensus       185 ~Wr~~f~v~~~~~~~~~~~~~~l~----esp~~l~~~~~~~~~~~~l~~---------------i~~~~~~~~~~~~---  242 (576)
                       ||+.|++.++..++..+.+++.+    +.|+.. .+.+.++.......               .............   
T Consensus       170 -~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (475)
T TIGR00924       170 -YHVGFNLAAVGMVIGLLTFFAGRHMLRDIGSVP-DPLSGQGKTYGKLLLALLAALALVFFCAWLMHHVVIANILLMTVT  247 (475)
T ss_pred             -hHHHHHHHHHHHHHHHHHHHHcccccccCCCCC-CCcchhhhhhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence             99999998765555444443333    222100 00000000000000               0000000000000   


Q ss_pred             HHHHHHhhhhhhcccchhhHHHhhhhcccchhhhhhHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcCCc----hhHHHHH
Q 008137          243 LKQSVENEKAEEGLIGKDMISRLKGAFGNKIVRRGLYAGVTVQVAQQFVGINTVMYYSPTIVQFAGFAS----KSTALAL  318 (576)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~  318 (576)
                      .............       ++..+.   .+.+...+..+.......+..+.......+.+.++....+    ....+.+
T Consensus       248 ~~~~~~~~~~~~~-------~~~~~~---~~~~~~~~l~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~~~~ip~~~~  317 (475)
T TIGR00924       248 LAVIIFFFRLAFK-------PRLDAV---ARNKMYAYIVLFLEAVVFWVLYAQMPTSLNFFADNNMHHEMLGMSVPVIWF  317 (475)
T ss_pred             HHHHHHHHHHHHh-------ccCCHH---HHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccceEECHHHH
Confidence            0000000000000       000000   0011112222333333334444444444555544421111    1113344


Q ss_pred             HHHHhHHHHHHHHHHH----Hhhcc-cCChHHH--HHHHHHHHHHHHHHHHHHHHhhhcCCCccccccccCCCCCCCCcc
Q 008137          319 SLVTSGLNALGSIVSM----AFVDK-YGRRRLM--IVSMFGLSSCLVALAVVFFQAAIHAPTVSQIESSHFGGNNTCPAY  391 (576)
Q Consensus       319 ~~~~~~~~~ig~~~~g----~l~dk-~grr~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  391 (576)
                      .....+..++..++..    ++.|| .+.+...  .+|+++.+++++.+.+.......+                     
T Consensus       318 ~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~---------------------  376 (475)
T TIGR00924       318 QSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKFTLGMLFCGASFLTFAASIWFADAG---------------------  376 (475)
T ss_pred             HhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCC---------------------
Confidence            4444444445544433    33443 2223333  677888888877766542110000                     


Q ss_pred             cccCCCCcccccccccccccccCCCCCCCCCCcccccccccccccccccccccccCCCCcchhHHHHHHHHHHHHhcCCc
Q 008137          392 ITDGNAKSWNCMDCLKAKCGFCAHKGNEYLPGACLIDEKSTDTLCSDEHRTYFISGCPSSFGWLAVVFLGAYIITYSPGM  471 (576)
Q Consensus       392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~  471 (576)
                                                                               -....|+.+....+...+- ...
T Consensus       377 ---------------------------------------------------------~~~s~~~~i~~~~~~~~ge-~~~  398 (475)
T TIGR00924       377 ---------------------------------------------------------GLTSPWFMVLIYLFQTLGE-LMI  398 (475)
T ss_pred             ---------------------------------------------------------CccCHHHHHHHHHHHHHHH-HHH
Confidence                                                                     0011244444444444443 345


Q ss_pred             ccccchhccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHhhcc
Q 008137          472 GTAPWIVNSEIYPLRYRGVGGGIAAVSNWTSNLIVSLTFLTLTEALGSAGTFLLFAGFSLLGLVAIYLLVP  542 (576)
Q Consensus       472 ~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~  542 (576)
                      .|....+..+..|++.||+.+|+......+|..+++.+.....+..++...|...++++++..++.++..|
T Consensus       399 ~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  469 (475)
T TIGR00924       399 SPLGLSWWTKIAPQRLMGQMLGMWFLAQAMGSLLGGYLATFGAVPQGVTGVFGKIGLVTLLVGVVMALMVP  469 (475)
T ss_pred             hHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence            67777888999999999999999999999999999988887777667777777777777777666655444

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=99.91  E-value=1.4e-21  Score=212.67  Aligned_cols=174  Identities=12%  Similarity=0.145  Sum_probs=140.9

Q ss_pred             HHHHHHHHHhhhhhhhhHHHHHH-HHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhc-cCchHHHHHHHHHHH
Q 008137           31 ALSAGIGGLLFGYDTGVISGALL-YIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDR-FGRKISLLGADVLFF  108 (576)
Q Consensus        31 ~~~~~l~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr-~Grr~~~~~~~~~~~  108 (576)
                      +..+++..+...+......+.++ ++.+++|.+..+.   +++.+.+.....+..+++|+++|| +|||++++++.++++
T Consensus        16 ~~~~~~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~a---~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~   92 (489)
T PRK10207         16 FFMIFFVELWERFGYYGVQGILAVFFVKQLGFSQEQA---FITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLA   92 (489)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH---HHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHH
Confidence            33444444555555555554444 4567899888887   889999998888889999999999 999999999999999


Q ss_pred             HHHHHHHhcchHHH-HHHHHHHHHhhhhhhhhhHHHHHHhccCcc--hhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCch
Q 008137          109 IGAIIMAIAPQPWV-IILGRIFVGLGVGMASMTAPLYISEASPAK--IRGALVSANGFLITGGQFLAYLINLAFTKAPGT  185 (576)
Q Consensus       109 i~~~~~~~~~~~~~-l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~--~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~  185 (576)
                      +++++++++++... ++++|+++|+|.|...+...++++|.+|++  +|++++++++.+.++|.++||.+++++.+..+ 
T Consensus        93 ~g~~~~~~~~~~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~g-  171 (489)
T PRK10207         93 IGYFMTGMSLLKPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADKFG-  171 (489)
T ss_pred             HHHHHHHHhccchhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHhhC-
Confidence            99999999877554 558999999999999999999999999877  45778999999999999999999999999887 


Q ss_pred             hHHHHHHhHHHHHHHHHHHhhcc
Q 008137          186 WRWMLGVAGLPAVVQFGLMMMLP  208 (576)
Q Consensus       186 Wr~~f~v~~~~~~~~~~~~~~l~  208 (576)
                      ||+.|++.++..++.++.+...+
T Consensus       172 w~~~F~i~~i~~~~~~~~~~~~~  194 (489)
T PRK10207        172 YSVTYNLCGAGLIIALLVYFACR  194 (489)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHcc
Confidence            99999997553333333333333

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.91  E-value=4.9e-23  Score=205.95  Aligned_cols=165  Identities=18%  Similarity=0.201  Sum_probs=130.1

Q ss_pred             hhHHHHHHHHHHhhc----cch-hhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHhcchH
Q 008137           46 GVISGALLYIKEDFR----DVE-KKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFIGAIIMAIAPQP  120 (576)
Q Consensus        46 ~~~~~~~~~i~~~~~----~~~-~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~  120 (576)
                      +..-+....+.++|+    .++ ......|.+.+.|.+++.+.++.+|.++||+|||+++++++...++...+.+++.|+
T Consensus        42 ~~L~~~~~~~V~~F~~a~~~~~~~~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~F  121 (451)
T KOG2615|consen   42 SSLYPFVVFMVRDFNIAIGEPDGASVFYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRNF  121 (451)
T ss_pred             cchhHHHHHhhHHHHHhhCCcccccchhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333344445556665    222 133456999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhcCC---CchhHH--HHHHhHH
Q 008137          121 WVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFTKA---PGTWRW--MLGVAGL  195 (576)
Q Consensus       121 ~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~---~~~Wr~--~f~v~~~  195 (576)
                      ..+.+.|++.|+.-| +...+.++++|.+++|+|+++++.++...++|.++||.+++++.++   .+....  +-++..+
T Consensus       122 ~afv~aR~l~Gi~kg-nl~v~rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~f~~~~g~~p~alP~~~v~i  200 (451)
T KOG2615|consen  122 AAFVLARFLGGIFKG-NLSVIRAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQFSSISGSYPFALPCLLVFI  200 (451)
T ss_pred             HHHHHHHHhhhhccC-chHHHHHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHhhHhhhccCchHHHHHHHHH
Confidence            777777999999887 6788999999999999999999999999999999999999999882   221211  1233333


Q ss_pred             HHHH-HHHHHhhccCCh
Q 008137          196 PAVV-QFGLMMMLPESP  211 (576)
Q Consensus       196 ~~~~-~~~~~~~l~esp  211 (576)
                      ++.. .....+++||+-
T Consensus       201 ~a~~~v~~~~~~lpETL  217 (451)
T KOG2615|consen  201 LAAGDVTFFPWFLPETL  217 (451)
T ss_pred             HHHHHHHHHHHhCCccc
Confidence            3333 334466789984

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.91  E-value=2.5e-24  Score=216.31  Aligned_cols=382  Identities=14%  Similarity=0.069  Sum_probs=270.7

Q ss_pred             hHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhcc--------------------------------------------
Q 008137           26 YIMKLALSAGIGGLLFGYDTGVISGALLYIKEDFRD--------------------------------------------   61 (576)
Q Consensus        26 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~--------------------------------------------   61 (576)
                      .|..++..++++-+.+.+....+.|.+|....|.+-                                            
T Consensus        18 ~r~lilviv~ialllDnmL~~vivPiiP~~L~d~~~~p~~~~~~~~is~~~~~~~~~~~~~~~~~~~~~t~a~~~~~~~~   97 (464)
T KOG3764|consen   18 SRPLILVIVSIALLLDNMLYTVIVPIIPGYLYDIQAEPTIIQPFFPISTAPIPPGSMSSFSSLNISTESTNASAGKSPAE   97 (464)
T ss_pred             ccceEEEEEehhhhccCccceeeeccCccHHHHhccCCccCccccccccCCCCCccccceecccCCccccccccccCchh
Confidence            344555666777788888888888888887766551                                            


Q ss_pred             ---chhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhhhhhhh
Q 008137           62 ---VEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFIGAIIMAIAPQPWVIILGRIFVGLGVGMAS  138 (576)
Q Consensus        62 ---~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~R~l~G~~~g~~~  138 (576)
                         .+.+..++|++.+...+.+.+.+++.|.+.||+|+|..+++|+.++..++++.++.++++++++.|.+||+|.+...
T Consensus        98 ~~~~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~sy~~l~vAR~LQgvgsA~~~  177 (464)
T KOG3764|consen   98 AISLDRENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNSYPMLFVARSLQGVGSAFAD  177 (464)
T ss_pred             ccCccccccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHhhhhHHHHH
Confidence               11223345999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHhccCcch-hhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHhHHHHHHHHHHHhhccCChhHHhhc
Q 008137          139 MTAPLYISEASPAKI-RGALVSANGFLITGGQFLAYLINLAFTKAPGTWRWMLGVAGLPAVVQFGLMMMLPESPRWLYRQ  217 (576)
Q Consensus       139 ~~~~~~i~e~~~~~~-R~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~Wr~~f~v~~~~~~~~~~~~~~l~esp~~l~~~  217 (576)
                      ....+++++.+|+++ |++++|+.-.+.++|.++||+++|.+.+..| .+.+|++.+++.++...+.+++-|..+   .+
T Consensus       178 tsglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~G-k~aPFlVL~~v~Lld~~L~l~vi~p~~---~~  253 (464)
T KOG3764|consen  178 TSGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAG-KSAPFLVLAIVLLLDGALQLLVIEPTE---MD  253 (464)
T ss_pred             hhhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcC-CcCcHHHHHHHHHHHHHHHHheeCccc---cC
Confidence            999999999998764 7999999999999999999999999999988 999999999999998888555433211   00


Q ss_pred             CCHHHHHHHHHHhCCchhhhHHHHHHHHHHHhhhhhhcccchhhHHHhhhhcccchhhhhhHHHHHHHHHHHHHhhHHHH
Q 008137          218 NKVDEARAILEKIYPADQVEEEVNLLKQSVENEKAEEGLIGKDMISRLKGAFGNKIVRRGLYAGVTVQVAQQFVGINTVM  297 (576)
Q Consensus       218 ~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (576)
                      .+  +                            .++        ..+.+++++++..     +...........+....-
T Consensus       254 ~~--~----------------------------~~~--------~~~~~~Ll~dP~I-----~~~agai~~~n~~lafLe  290 (464)
T KOG3764|consen  254 PD--S----------------------------TEQ--------GTPMWSLLMDPYI-----LLIAGAITFSNSSLAFLE  290 (464)
T ss_pred             cc--c----------------------------ccc--------CccHHHHHhCchH-----hhhhcchhhccchHHHhC
Confidence            00  0                            000        0334455555533     223333333333334444


Q ss_pred             hhhHHHHHhhcCCchhHHHHHHHHHhHHHHHHHHHHHHhhcccC--ChHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcc
Q 008137          298 YYSPTIVQFAGFASKSTALALSLVTSGLNALGSIVSMAFVDKYG--RRRLMIVSMFGLSSCLVALAVVFFQAAIHAPTVS  375 (576)
Q Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dk~g--rr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  375 (576)
                      -.++.++.+....+.-..+.......+...++..+.|.+.||++  |......+.+....+.....+......       
T Consensus       291 Ptlslwm~e~m~~p~w~~G~~fLp~~~~y~ig~~lfg~la~k~~~~~wl~~~~gl~~~G~~~~~iP~~~~~~~-------  363 (464)
T KOG3764|consen  291 PTLSLWMLETMFTPGWEVGLAFLPASLSYAIGTNLFGKLADKYPHLRWLLSLGGLATVGVSSGPIPFATSIAQ-------  363 (464)
T ss_pred             cccHHHHHHhccCCCcceeeeecccccchhccCchHHHHHHhcCchhHHHHHHHHHHHHHHhchhHhhhhHHH-------
Confidence            44455555555545557777778888889999999999999999  433333333333333222222211100       


Q ss_pred             ccccccCCCCCCCCcccccCCCCcccccccccccccccCCCCCCCCCCcccccccccccccccccccccccCCCCcchhH
Q 008137          376 QIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAHKGNEYLPGACLIDEKSTDTLCSDEHRTYFISGCPSSFGWL  455 (576)
Q Consensus       376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~  455 (576)
                                                                                                   -|.
T Consensus       364 -----------------------------------------------------------------------------L~v  366 (464)
T KOG3764|consen  364 -----------------------------------------------------------------------------LWV  366 (464)
T ss_pred             -----------------------------------------------------------------------------Hhh
Confidence                                                                                         122


Q ss_pred             HHHHHHHHHHHhcCCcccccchhcccccccc---ccccchhHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHH
Q 008137          456 AVVFLGAYIITYSPGMGTAPWIVNSEIYPLR---YRGVGGGIAAVSNWTSNLIVSLTFLTLTEALGSAGTFLLFAGFSLL  532 (576)
Q Consensus       456 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~---~rg~~~g~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~i  532 (576)
                      ....+++.+......+.|.. .++.|.-..+   .-|.+.++......+|.+++|.+.|.+.+..|+.+...+.++..++
T Consensus       367 p~~~l~~~i~~~dasl~P~l-~~lvd~rh~s~~~vYGsVyaIad~a~sla~a~GP~~gg~iv~~iGF~wl~~iig~~n~i  445 (464)
T KOG3764|consen  367 PNFGLGFGIGLADASLIPTL-GYLVDPRHVSGFNVYGSVYAIADAAFSLAYAIGPTFGGSLVEAIGFEWLMTIIGILNLI  445 (464)
T ss_pred             hhHHHHHHHHHHHHHHhhhh-HHhcchhhccccceeeeHHHHHHHHHHHhhhccccccchheeehhHHHHHHHHHHHHHH
Confidence            23333333333333333333 2333433333   6689999999999999999999999999999999988888888877


Q ss_pred             HHHHHHh
Q 008137          533 GLVAIYL  539 (576)
Q Consensus       533 ~~~~~~~  539 (576)
                      -.-++.+
T Consensus       446 yapvl~l  452 (464)
T KOG3764|consen  446 YAPVLLL  452 (464)
T ss_pred             HHHHHHH
Confidence            5554433

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.91  E-value=5.7e-21  Score=202.43  Aligned_cols=374  Identities=14%  Similarity=-0.018  Sum_probs=243.4

Q ss_pred             HHHHHHHHHhhhhhhhhHHHHHHHHHHhhccchhhhHHHHHH--HHHHHHHHHHHHHHHH-HhhhccCchHHHHHHHHHH
Q 008137           31 ALSAGIGGLLFGYDTGVISGALLYIKEDFRDVEKKTWLQELI--VSMAVAGAIFGAGFGG-WINDRFGRKISLLGADVLF  107 (576)
Q Consensus        31 ~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~i--~s~~~~~~~i~~~~~G-~l~dr~Grr~~~~~~~~~~  107 (576)
                      ...++..++.+++......+.+|.+.++.|.+..+.   |++  .+...+...+.+++.+ +..||+||||..++...+.
T Consensus         3 ~~~~~~ly~~~g~~~~~~~p~lp~~l~~~g~~~~~i---Gl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~i~~~~~~   79 (390)
T TIGR02718         3 VITLGLLYLSQGIPIGLAMDALPTLLREDGAPLTAL---AFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRRSWVLPMQCL   79 (390)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHcCCCHHHH---HHHHHHHHHHHHHHHHHHHHhccccccCCcchhHHHHHHHH
Confidence            445566678899999999999999999999988888   886  4666888888888884 4799999998876555332


Q ss_pred             -HHHHHHHH---hcch-HHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 008137          108 -FIGAIIMA---IAPQ-PWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFTKA  182 (576)
Q Consensus       108 -~i~~~~~~---~~~~-~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~  182 (576)
                       ++.....+   ...+ ..+++..-++.++..+...+....+..|+.++++++.+.+....+..+|.++|..+.+++.+.
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~~~  159 (390)
T TIGR02718        80 VSACLASLALVGPDVAGAGWAVGLLACASLASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGTLVLFGK  159 (390)
T ss_pred             HHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             22222222   2222 334455556666777777888888889999999889998999888899999999888888887


Q ss_pred             CchhHHHHHHhHHHHHHHHHHHhhccCChhHHhhcCCHHHHHHHHHHhCCchhhhHHHHHHHHHHHhhhhhhcccchhhH
Q 008137          183 PGTWRWMLGVAGLPAVVQFGLMMMLPESPRWLYRQNKVDEARAILEKIYPADQVEEEVNLLKQSVENEKAEEGLIGKDMI  262 (576)
Q Consensus       183 ~~~Wr~~f~v~~~~~~~~~~~~~~l~esp~~l~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (576)
                      .+ ||..|++.+++.++..+..++++|+++.  ++++.+.                                      ..
T Consensus       160 ~g-w~~~f~~~a~l~~~~~~~~~~~~~~~~~--~~~~~~~--------------------------------------~~  198 (390)
T TIGR02718       160 FG-QRPAFLLVACVPLASLVCVLWLKDRAVA--SPEAPLA--------------------------------------RR  198 (390)
T ss_pred             hC-HHHHHHHHHHHHHHHHHHHHHcCCCCcC--ccccchh--------------------------------------hH
Confidence            77 9999999998887766665555443210  0000000                                      00


Q ss_pred             HHhhhhcccchhhhhhHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcCCchhHHHHHHHHHh-HHHHHHHHHHHHhhcccC
Q 008137          263 SRLKGAFGNKIVRRGLYAGVTVQVAQQFVGINTVMYYSPTIVQFAGFASKSTALALSLVTS-GLNALGSIVSMAFVDKYG  341 (576)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ig~~~~g~l~dk~g  341 (576)
                      .+.++.++++..+....     ..+...........+.+.|+++.+. +.++.+.+..... ...+++.++.|++.||+|
T Consensus       199 ~~~~~~l~~~~~~~~~~-----~~~l~~~~~~~~~~~~~~~l~~~G~-s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g  272 (390)
T TIGR02718       199 ASLFRFFRRPLAWSLLA-----LALLSAMTAVSGFGLSKLYLVDAGW-PLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAG  272 (390)
T ss_pred             HHHHHHHcCcCHHHHHH-----HHHHHHHHHHHHHHHhhHHHHhcCC-CHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhh
Confidence            22344555554333211     1112222234444466777777766 6667776665554 456778899999999999


Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccccccCCCCCCCCcccccCCCCcccccccccccccccCCCCCCCC
Q 008137          342 RRRLMIVSMFGLSSCLVALAVVFFQAAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAHKGNEYL  421 (576)
Q Consensus       342 rr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  421 (576)
                      +|+.+..+..+.++..+........ .. .                                                  
T Consensus       273 ~~~~l~~~~~~~~~~~~~~~~~~~~-~~-~--------------------------------------------------  300 (390)
T TIGR02718       273 LWRTFILGVGLAGSLALLWFAQAAF-WL-A--------------------------------------------------  300 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHc-cc-C--------------------------------------------------
Confidence            9998887666553332222211110 00 0                                                  


Q ss_pred             CCcccccccccccccccccccccccCCCCcchhHHHHHHHHHHHHhcCCcccccchhccccccc-cccccchhHHHHHHH
Q 008137          422 PGACLIDEKSTDTLCSDEHRTYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEIYPL-RYRGVGGGIAAVSNW  500 (576)
Q Consensus       422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~-~~rg~~~g~~~~~~~  500 (576)
                                                 |.  .+.......+..+..+... +.......+..++ +.+|+.+++.+....
T Consensus       301 ---------------------------~~--~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  350 (390)
T TIGR02718       301 ---------------------------PG--IAVAWSCSAFGSLITGITS-VAIYTAFMRFAGDGDQAGTDVTAVQSTRD  350 (390)
T ss_pred             ---------------------------Cc--HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhCcccchHHHHHHHHHHHH
Confidence                                       00  1111111111111122111 2233343444554 889999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHH
Q 008137          501 TSNLIVSLTFLTLTEALGSAGTFLLFAGFSLLGLVA  536 (576)
Q Consensus       501 ~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~~  536 (576)
                      +|..++|.+.|.+.|..|+...|...+++.+++.+.
T Consensus       351 lg~~~g~~~~G~l~~~~G~~~~f~~~~~~~l~a~~~  386 (390)
T TIGR02718       351 LGELIASSIAGYLTDRFGYAGGFLSGTVLAVLAILL  386 (390)
T ss_pred             HHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHH
Confidence            999999999999999999888888877777766544

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>PTZ00207 hypothetical protein; Provisional

Probab=99.90  E-value=4e-21  Score=209.99  Aligned_cols=176  Identities=13%  Similarity=0.071  Sum_probs=140.5

Q ss_pred             hhhHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHH
Q 008137           24 TPYIMKLALSAGIGGLLFGYDTGVISGALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGA  103 (576)
Q Consensus        24 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~  103 (576)
                      .++||..+..........+ ....++...|.+.+++|.+..+.   +++.++. .....++++.|++.||+|||++++++
T Consensus        23 e~~Rw~~lva~~~~~~~~g-~~y~fsv~s~~L~~~lgls~~~l---~~i~svg-~~~g~~~lp~G~L~Dr~G~R~vllig   97 (591)
T PTZ00207         23 EPRRFALLVLGAFCSICTS-FMYAFNLISGAMQARYNLTQRDL---STITTVG-IAVGYFLLPYSFIYDYLGPRPIFVLS   97 (591)
T ss_pred             ccchHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCcCHHHH---HHHHHHH-HHHHHHHHHHHHHHHHhCcHHHHHHH
Confidence            3566665555444444333 33566677889999999998887   7777764 34556788899999999999999999


Q ss_pred             HHHHHHHHHHHHhc------chHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHH-HHHHH
Q 008137          104 DVLFFIGAIIMAIA------PQPWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFL-AYLIN  176 (576)
Q Consensus       104 ~~~~~i~~~~~~~~------~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l-~~~l~  176 (576)
                      .+++++++++++++      ++++.++++|++.|+|.+...+.+...+.+|+| ++||+++|+...+.++|..+ +++..
T Consensus        98 ~ll~~iG~ll~ala~~~~i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~  176 (591)
T PTZ00207         98 MTVFCLGTLLFALTFQEVIEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQL  176 (591)
T ss_pred             HHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999997      689999999999999999999999999999996 78999999999999999976 55555


Q ss_pred             HHhcCCCchhHHHHHHhHHHHHHHHHH-Hhhcc
Q 008137          177 LAFTKAPGTWRWMLGVAGLPAVVQFGL-MMMLP  208 (576)
Q Consensus       177 ~~l~~~~~~Wr~~f~v~~~~~~~~~~~-~~~l~  208 (576)
                      +++.+   +|++.|++.+++.++..++ +++++
T Consensus       177 ~l~~~---~~~~~fl~l~vl~~vv~ll~~~~vr  206 (591)
T PTZ00207        177 AFFSD---NTSAYFFFLMSFALVVGILAIVFMR  206 (591)
T ss_pred             HHHHH---hHHHHHHHHHHHHHHHHHHHHhhee
Confidence            54442   5999888888887776555 34443

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=99.89  E-value=3.1e-20  Score=185.72  Aligned_cols=370  Identities=18%  Similarity=0.148  Sum_probs=277.0

Q ss_pred             HHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHH
Q 008137           28 MKLALSAGIGGLLFGYDTGVISGALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLF  107 (576)
Q Consensus        28 ~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~  107 (576)
                      +..+..+.+..+----....++|+++.+.+|++.+.+..   |+++++..+...+.+++..+++.|+|.++.+.+++++.
T Consensus        11 ~~li~gIvlia~NLR~~itsvgPLL~~Ir~~~gls~s~a---GlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli   87 (395)
T COG2807          11 LLLLAGIVLIAFNLRPAITSVGPLLDEIRQDLGLSFSVA---GLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLI   87 (395)
T ss_pred             hHHHHHHHHHHhccchhhhhhhhhHHHHHHHhcccHHHH---HHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHH
Confidence            444444444444455567889999999999999999999   99999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcchHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhH
Q 008137          108 FIGAIIMAIAPQPWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFTKAPGTWR  187 (576)
Q Consensus       108 ~i~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~Wr  187 (576)
                      .++.++-... +.+.++.+-.+.|.|.+...+..+..+.+.||++ -+..++++.+...+|..+++.+...+.+..++||
T Consensus        88 ~~G~~iR~~~-~~~~L~~gt~l~G~gIav~nVLLPslIK~~Fpk~-~~~mtglYs~sl~~~aaLaa~lavpla~~~~gW~  165 (395)
T COG2807          88 AAGILIRSLG-GLPLLFLGTLLAGAGIAVINVLLPSLIKRDFPKR-VGLMTGLYSTSLGAGAALAAALAVPLAQHSGGWR  165 (395)
T ss_pred             HHHHHHHhcc-cHHHHHHHHHHHHhhHHHHHHhhhHHHHhhcccc-hhhHHhHHHHHHHHHHHHHhhhhhHHHHhhccHH
Confidence            9999999887 7888899999999999999999999999999754 7999999999999999999999998888876699


Q ss_pred             HHHHHhHHHHHHHHHHHhhccCChhHHhhcCCHHHHHHHHHHhCCchhhhHHHHHHHHHHHhhhhhhcccchhhHHHhhh
Q 008137          188 WMLGVAGLPAVVQFGLMMMLPESPRWLYRQNKVDEARAILEKIYPADQVEEEVNLLKQSVENEKAEEGLIGKDMISRLKG  267 (576)
Q Consensus       188 ~~f~v~~~~~~~~~~~~~~l~esp~~l~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (576)
                      .....-+.++++.++.|+.-...++. .+.+.                                 .        ..+..+
T Consensus       166 ~aL~~WAl~allAl~~WlPq~~r~~~-~~~~~---------------------------------~--------~~~~~~  203 (395)
T COG2807         166 GALGFWALLALLALLIWLPQALREQA-ASIAT---------------------------------K--------LVSVRK  203 (395)
T ss_pred             HHHHHHHHHHHHHHHHHhhhcccccc-ccccc---------------------------------c--------cccccc
Confidence            99999999999888877543211100 00000                                 0        011122


Q ss_pred             hcccchhhhhhHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcCCchhHHHHHHHHHhHHHHHHHHHHHHhhccc-CChHHH
Q 008137          268 AFGNKIVRRGLYAGVTVQVAQQFVGINTVMYYSPTIVQFAGFASKSTALALSLVTSGLNALGSIVSMAFVDKY-GRRRLM  346 (576)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dk~-grr~~~  346 (576)
                      ++     +.+.-+.+.+.+..|...++....|.|.++.+.|. +..+++.+.....+.+++.++....+.+|. ++|+..
T Consensus       204 vw-----~~~~aW~vtLfmGlqS~~~Y~~~~WLP~ili~~G~-sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~  277 (395)
T COG2807         204 VW-----RSPLAWQVTLFMGLQSLLYYIVIGWLPAILIDRGL-SAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLV  277 (395)
T ss_pred             cc-----cCchhHHHHHHHHhhHHHHHHHHHHHHHHHHHcCC-CHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHH
Confidence            33     33445557777888888899999999999999998 777888888888999999999999999865 566766


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhcCCCccccccccCCCCCCCCcccccCCCCcccccccccccccccCCCCCCCCCCccc
Q 008137          347 IVSMFGLSSCLVALAVVFFQAAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAHKGNEYLPGACL  426 (576)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  426 (576)
                      .....++.++++.+.+....                                                            
T Consensus       278 ~~~~~~~l~G~~G~~~~P~~------------------------------------------------------------  297 (395)
T COG2807         278 VLALLLMLVGLVGLLLAPGQ------------------------------------------------------------  297 (395)
T ss_pred             HHHHHHHHHHHHHHHHhhhh------------------------------------------------------------
Confidence            66777777777666544221                                                            


Q ss_pred             ccccccccccccccccccccCCCCcchhHHHHHHHHHHHHhcCCcccccchhccc-cccccccccchhHHHHHHHHHHHH
Q 008137          427 IDEKSTDTLCSDEHRTYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSE-IYPLRYRGVGGGIAAVSNWTSNLI  505 (576)
Q Consensus       427 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e-~~p~~~rg~~~g~~~~~~~~g~~~  505 (576)
                                               ..++.   ..+++.+.+ +..+...+++.+ .-.++..+..+|+.+..+++-...
T Consensus       298 -------------------------~~~lw---~~llG~G~G-~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~  348 (395)
T COG2807         298 -------------------------LPILW---ALLLGLGQG-GAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAF  348 (395)
T ss_pred             -------------------------HHHHH---HHHHhCccc-hHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhh
Confidence                                     11222   122222222 223333344333 334566788899999999999999


Q ss_pred             HHHHHHHHHHhhccch-hhHHHHHHHHHHHHHHHh
Q 008137          506 VSLTFLTLTEALGSAG-TFLLFAGFSLLGLVAIYL  539 (576)
Q Consensus       506 ~~~~~~~l~~~~g~~~-~~~~~~~~~~i~~~~~~~  539 (576)
                      +|.++|++.|..|... .........++..+..+.
T Consensus       349 GP~l~G~lhDa~gsw~~~~~~l~~~~i~m~i~Gl~  383 (395)
T COG2807         349 GPWLFGFLHDATGSWSAPLVLLALATLLMLIFGLR  383 (395)
T ss_pred             hhhhHhHHHHhcCChHHHHHHHHHHHHHHHHHHhh
Confidence            9999999999987543 444444444444444433

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=99.88  E-value=2.5e-19  Score=192.06  Aligned_cols=408  Identities=15%  Similarity=0.137  Sum_probs=266.3

Q ss_pred             HhhhhhhhhHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhh----ccCchHHHHHH-HHHHHHHHHH
Q 008137           39 LLFGYDTGVISGALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWIND----RFGRKISLLGA-DVLFFIGAII  113 (576)
Q Consensus        39 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~d----r~Grr~~~~~~-~~~~~i~~~~  113 (576)
                      +-..+......+.++.+.++++.+....   +++..+..+...+.+++.|+++|    |+|||+.++++ .....++.++
T Consensus        14 ~Giq~~~~l~~~~l~~yl~~lg~~~~~~---~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~l   90 (477)
T TIGR01301        14 AGVQFGWALQLSLLTPYVQELGIPHAWA---SIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVIL   90 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCCHHHH---HHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHH
Confidence            3345566677777888889999988777   99999999999999999999999    59999988875 6666667777


Q ss_pred             HHhcchHH-----------------HHHHHHHHHHhhhhhhhhhHHHHHHhccCcchh--hHHHHHHHHHHHHHHHHHHH
Q 008137          114 MAIAPQPW-----------------VIILGRIFVGLGVGMASMTAPLYISEASPAKIR--GALVSANGFLITGGQFLAYL  174 (576)
Q Consensus       114 ~~~~~~~~-----------------~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R--~~~~~~~~~~~~~G~~l~~~  174 (576)
                      .+++++.+                 .++++-.+..++.....+...++++|.+|+++|  +.+.++.+...++|.++|+.
T Consensus        91 l~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~  170 (477)
T TIGR01301        91 IGFAADIGHLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYA  170 (477)
T ss_pred             HHhCchhhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77776643                 223333344557888888899999999998865  68999999999999999999


Q ss_pred             HHHHhc--CCC------------chhHHHHHHhHHHHHHHHHH-HhhccCChhHHhhcCCHHHHHHHHHHhCCchhhhHH
Q 008137          175 INLAFT--KAP------------GTWRWMLGVAGLPAVVQFGL-MMMLPESPRWLYRQNKVDEARAILEKIYPADQVEEE  239 (576)
Q Consensus       175 l~~~l~--~~~------------~~Wr~~f~v~~~~~~~~~~~-~~~l~esp~~l~~~~~~~~~~~~l~~i~~~~~~~~~  239 (576)
                      +++...  +..            .+.|+.|++.+++.++..+. .+..+|.|....+..+.++       ....+     
T Consensus       171 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~~~~~~~~~~-------~~~~~-----  238 (477)
T TIGR01301       171 AGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENPLIGSDDFINSE-------AAPPS-----  238 (477)
T ss_pred             HHHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccCCCccccchhhh-------ccccc-----
Confidence            998751  110            14789999988877776666 5667886531110000000       00000     


Q ss_pred             HHHHHHHHHhhhhhhcccchhhHHHhhhhcccchhhhhhHHHHHHHHHHHHHhhHHHHhhhHHHHHh-hcCCch------
Q 008137          240 VNLLKQSVENEKAEEGLIGKDMISRLKGAFGNKIVRRGLYAGVTVQVAQQFVGINTVMYYSPTIVQF-AGFASK------  312 (576)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~------  312 (576)
                                 +...    .   ..++++++.-....+.+..++..-++.+.++..+..|.+.++.+ +...++      
T Consensus       239 -----------~~~~----~---~~~~~i~~~~~~mP~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y  300 (477)
T TIGR01301       239 -----------KHGE----E---AFFGELFGAFKYLPRPVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKY  300 (477)
T ss_pred             -----------ccch----h---hhHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHH
Confidence                       0000    0   11222222222223344456666666777788888777777653 222111      


Q ss_pred             hH----HHHHHHHHhHHHHHHHHHHHHhhcccCC-hHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccccccCCCCCC
Q 008137          313 ST----ALALSLVTSGLNALGSIVSMAFVDKYGR-RRLMIVSMFGLSSCLVALAVVFFQAAIHAPTVSQIESSHFGGNNT  387 (576)
Q Consensus       313 ~~----~~~~~~~~~~~~~ig~~~~g~l~dk~gr-r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  387 (576)
                      ++    ..+......+...+.+++..++.+|+|+ |++...+.++.+++++...+......+.. .              
T Consensus       301 ~~gvr~G~~~l~~~s~~~~i~s~~l~~l~~~~g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~-~--------------  365 (477)
T TIGR01301       301 DDGVRAGAFGLMLNSVVLGITSIGMEKLCRGWGAGKRLWGIVNIILAICLAATVLVTYVAKNSR-Y--------------  365 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhhhccc-c--------------
Confidence            11    1222234444445666777888999985 67778888888888887766543110000 0              


Q ss_pred             CCcccccCCCCcccccccccccccccCCCCCCCCCCcccccccccccccccccccccccCCCCcchhHHHHHHHHHHHHh
Q 008137          388 CPAYITDGNAKSWNCMDCLKAKCGFCAHKGNEYLPGACLIDEKSTDTLCSDEHRTYFISGCPSSFGWLAVVFLGAYIITY  467 (576)
Q Consensus       388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~  467 (576)
                           .|+-.+.                                              .+++....+..++.+...++.+
T Consensus       366 -----~~~~~~~----------------------------------------------~~~~~~~~~~~l~~~~~~Gi~~  394 (477)
T TIGR01301       366 -----YDGDGES----------------------------------------------LPPPTGIKASALIVFAILGIPL  394 (477)
T ss_pred             -----ccccccc----------------------------------------------cCcchhhHHHHHHHHHHhhHHH
Confidence                 0000000                                              0111111245555556666655


Q ss_pred             cCCcccccchhccccccc--cccccchhHHHHHHHHHHHHHHHHHHHHHHhhcc--chhhHHHHHHHHHHHHHHHhhccC
Q 008137          468 SPGMGTAPWIVNSEIYPL--RYRGVGGGIAAVSNWTSNLIVSLTFLTLTEALGS--AGTFLLFAGFSLLGLVAIYLLVPE  543 (576)
Q Consensus       468 ~~~~~~~~~~~~~e~~p~--~~rg~~~g~~~~~~~~g~~~~~~~~~~l~~~~g~--~~~~~~~~~~~~i~~~~~~~~~~~  543 (576)
                      . ....++++++++..|.  +..|..+|+.|.+..+..++..+..|.+.+..|.  ...+.+.++.++++.+..++.+|+
T Consensus       395 A-~~~siPfal~s~~~~~~~~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~~~~~~~~~  473 (477)
T TIGR01301       395 A-ITYSIPFALASIRSSNLGAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLLALILLPR  473 (477)
T ss_pred             H-HHHHHhHHHHHHHccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHHHHHHhCCC
Confidence            5 3445788898998884  4569999999999999999999988887776653  346777888888899999899998


Q ss_pred             CCC
Q 008137          544 TKG  546 (576)
Q Consensus       544 ~~~  546 (576)
                      ++.
T Consensus       474 ~~~  476 (477)
T TIGR01301       474 PRV  476 (477)
T ss_pred             CCC
Confidence            764

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=99.87  E-value=5.4e-20  Score=201.09  Aligned_cols=164  Identities=15%  Similarity=0.200  Sum_probs=132.1

Q ss_pred             HHHHHHhhhhhhhhHHHHHHH-HHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhc-cCchHHHHHHHHHHHHHH
Q 008137           34 AGIGGLLFGYDTGVISGALLY-IKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDR-FGRKISLLGADVLFFIGA  111 (576)
Q Consensus        34 ~~l~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr-~Grr~~~~~~~~~~~i~~  111 (576)
                      +++..+...+....+...++. +.+++|.+..+.   +++.+.+........+++|+++|| +|||++++++.++++++.
T Consensus        26 ~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a---~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~  102 (500)
T PRK09584         26 IFSIELWERFGYYGLQGIMAVYLVKQLGMSEADS---ITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGY  102 (500)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHH
Confidence            334445555555555555555 458899988877   777777776666667899999999 599999999999999999


Q ss_pred             HHHHhcc-hHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcch--hhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHH
Q 008137          112 IIMAIAP-QPWVIILGRIFVGLGVGMASMTAPLYISEASPAKI--RGALVSANGFLITGGQFLAYLINLAFTKAPGTWRW  188 (576)
Q Consensus       112 ~~~~~~~-~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~--R~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~Wr~  188 (576)
                      +++++++ +.+.+.++|+++|++.|...+...+++.|++|+++  |..++++++.+.++|..+||.+++++.+..+ ||+
T Consensus       103 ~l~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g-~~~  181 (500)
T PRK09584        103 ALVAWSGHDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAKYG-WSV  181 (500)
T ss_pred             HHHHHhcccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHhhC-HHH
Confidence            9999875 56677788999999999999999999999998653  4567889999999999999999999988777 999


Q ss_pred             HHHHhHHHHHHHH
Q 008137          189 MLGVAGLPAVVQF  201 (576)
Q Consensus       189 ~f~v~~~~~~~~~  201 (576)
                      .|++.++..++.+
T Consensus       182 ~F~i~~i~~~i~~  194 (500)
T PRK09584        182 AFALSVVGMLITV  194 (500)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999876544433

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=99.85  E-value=1.7e-18  Score=183.24  Aligned_cols=375  Identities=17%  Similarity=0.097  Sum_probs=258.3

Q ss_pred             HHHHhhhhhhhhHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccC-chHHHHHHHHHHHHHHHHH
Q 008137           36 IGGLLFGYDTGVISGALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFG-RKISLLGADVLFFIGAIIM  114 (576)
Q Consensus        36 l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~G-rr~~~~~~~~~~~i~~~~~  114 (576)
                      ..+++.++..+.+.|.++.+.++.|.+..+.   |++.++..+...++++++|+++||++ +|+.+.+..++.++...+.
T Consensus         9 ~~~f~~f~~~G~~~p~~~~~L~~~G~s~~qI---G~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~   85 (400)
T PF03825_consen    9 LMYFLYFFAYGAFLPYLPLYLESRGFSGTQI---GILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLL   85 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHH
Confidence            4456667777888889999999999988888   99999999999999999999999986 5788888888888877777


Q ss_pred             HhcchHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHH-HHhcCCCc--hhHHHHH
Q 008137          115 AIAPQPWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLIN-LAFTKAPG--TWRWMLG  191 (576)
Q Consensus       115 ~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~-~~l~~~~~--~Wr~~f~  191 (576)
                      ...++++.+++.-++..+......|...++..++..+  ++.-.|-.....++|.+++.... +.+....+  +..+.++
T Consensus        86 ~~~~~f~~~~~~~~l~~~~~~p~~pl~dsi~~~~~~~--~~~~YG~iRlwGSiGf~~~~~~~~~~~~~~~~~~~~~~~~~  163 (400)
T PF03825_consen   86 AFSSSFWWLFVIMLLFSFFFSPTMPLSDSIALSYLGD--RGKDYGRIRLWGSIGFIVAALAFGGLLGGYLGISGTSLIFY  163 (400)
T ss_pred             HHhccHHHHHHHHHHHHHHHccHHHHHHHHHHHHccc--ccCCCCcchhhhhHHHHHHHHHHHHHHHhhhccccccHHHH
Confidence            8888999998888888988888899999998888753  34445666667777777764432 22222111  2345666


Q ss_pred             HhHHHHHHHHHHHhhccCChhHHhhcCCHHHHHHHHHHhCCchhhhHHHHHHHHHHHhhhhhhcccchhhHHHhhhhccc
Q 008137          192 VAGLPAVVQFGLMMMLPESPRWLYRQNKVDEARAILEKIYPADQVEEEVNLLKQSVENEKAEEGLIGKDMISRLKGAFGN  271 (576)
Q Consensus       192 v~~~~~~~~~~~~~~l~esp~~l~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (576)
                      +.+...++.....+.+|+.|+....+.+.++                                     ....+..+++++
T Consensus       164 i~~~~~~ll~~~~l~lp~~~~~~~~~~~~~~-------------------------------------~~~~~~~~llk~  206 (400)
T PF03825_consen  164 IAAILSLLLAGFALFLPKTPPKRSAKESVKK-------------------------------------LLGLDALKLLKN  206 (400)
T ss_pred             HHHHHHHHHHHHHHhCCCCccccccCCCccc-------------------------------------ccchHHHHHhcC
Confidence            6666666555556678887631111100000                                     000223355666


Q ss_pred             chhhhhhHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcCCchhHHHHHHHHHhHHHHHHHHHHHHhhcccCChHHHHHHHH
Q 008137          272 KIVRRGLYAGVTVQVAQQFVGINTVMYYSPTIVQFAGFASKSTALALSLVTSGLNALGSIVSMAFVDKYGRRRLMIVSMF  351 (576)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dk~grr~~~~~~~~  351 (576)
                      |....     +.+..+...........+.+.|+++.+..+....+.+..+..+..++...+.+++.+|+|.|+++.++++
T Consensus       207 ~~~~~-----Fll~~~l~~~~~~~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~  281 (400)
T PF03825_consen  207 PRFLV-----FLLAAFLIGISHAAYYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALV  281 (400)
T ss_pred             ccHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence            54432     3333333344456677788899999886566666766677778889999999999999999999999988


Q ss_pred             HHHHHHHHHHHHHHHhhhcCCCccccccccCCCCCCCCcccccCCCCcccccccccccccccCCCCCCCCCCcccccccc
Q 008137          352 GLSSCLVALAVVFFQAAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAHKGNEYLPGACLIDEKS  431 (576)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  431 (576)
                      ..++=..++.....+                                                                 
T Consensus       282 ~~~vR~~l~a~~~~~-----------------------------------------------------------------  296 (400)
T PF03825_consen  282 AYAVRWLLYAYFSDP-----------------------------------------------------------------  296 (400)
T ss_pred             HHHHHHHHHHHhcCC-----------------------------------------------------------------
Confidence            888777766655210                                                                 


Q ss_pred             cccccccccccccccCCCCcchhHHHHHH----HHHHHHhcCCcccccchhccccccccccccchhHHHHH-HHHHHHHH
Q 008137          432 TDTLCSDEHRTYFISGCPSSFGWLAVVFL----GAYIITYSPGMGTAPWIVNSEIYPLRYRGVGGGIAAVS-NWTSNLIV  506 (576)
Q Consensus       432 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~~~g~~~~~-~~~g~~~~  506 (576)
                                           .+..+...    .+.+..|+... .....++.+..|++.|+++.++++.. ..+|..++
T Consensus       297 ---------------------~~~~~~~~~l~q~lhG~tf~~~~-~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG  354 (400)
T PF03825_consen  297 ---------------------WPFIVALQLLGQLLHGLTFGLFH-AASVRYIDRIAPPELRATAQGLYSALSFGLGGAIG  354 (400)
T ss_pred             ---------------------cHHHHHHHHHHHhhhhHHHHHHH-HHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHH
Confidence                                 01111111    22344443222 23446889999999999999998765 67999999


Q ss_pred             HHHHHHHHHhhccchh------hHHHHHHHHHHHHHHHhhccCC
Q 008137          507 SLTFLTLTEALGSAGT------FLLFAGFSLLGLVAIYLLVPET  544 (576)
Q Consensus       507 ~~~~~~l~~~~g~~~~------~~~~~~~~~i~~~~~~~~~~~~  544 (576)
                      ..+.|.+.|+.|.+..      +.+.+++.++..++.+++.+|+
T Consensus       355 ~~igG~l~~~~g~~~~~~~~~~~~v~a~~~~~~~~~f~~~fk~~  398 (400)
T PF03825_consen  355 SLIGGWLYDAFGARGMFDWSAVFLVFAVMALVILVLFVILFKPK  398 (400)
T ss_pred             HHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence            9999999999876643      3445555555555555554443

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=99.84  E-value=4.7e-20  Score=194.33  Aligned_cols=424  Identities=15%  Similarity=0.154  Sum_probs=278.2

Q ss_pred             hchhhHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCc-hHHH
Q 008137           22 WTTPYIMKLALSAGIGGLLFGYDTGVISGALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGR-KISL  100 (576)
Q Consensus        22 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Gr-r~~~  100 (576)
                      ..++.+|+.+.+..+..++.....+++.+..-++.++++.+.+.. ..|++.++..++.+++++.+|+++.|.|. |+.+
T Consensus        27 ~~~~t~wrsi~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~-ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pl  105 (488)
T KOG2325|consen   27 DERKTNWRSIYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATAT-FFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPL  105 (488)
T ss_pred             cccCCchHhHHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcc-hhhHHHHHHHHHHHhcchhhcccccccCCcccCH
Confidence            345577888888889999999999988887777777755433332 33999999999999999999999999997 8889


Q ss_pred             HHHHHHHHHHHHHH-Hhc---c-hHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHH
Q 008137          101 LGADVLFFIGAIIM-AIA---P-QPWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLI  175 (576)
Q Consensus       101 ~~~~~~~~i~~~~~-~~~---~-~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l  175 (576)
                      +.|.++..+|.++. ++.   + .-+.++++|++.|+|.| ......+|+++....++|.++++....+..+|.++||.+
T Consensus       106 i~s~ii~~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~~-n~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~  184 (488)
T KOG2325|consen  106 IVSFLIAIIGNLLYLALAYVPNGVKYLMLVARILTGVGVG-NFAVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTI  184 (488)
T ss_pred             HHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHcCcCcc-cHHHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHH
Confidence            99999999999998 432   3 67889999999999988 567789999999999999999999999999999999999


Q ss_pred             HHHhcCCCc-h-----------hHHHHHHhHHHHHHHHHH-HhhccCChhHHhhcCCHHHHHHHHHHhCCchhhhHHHHH
Q 008137          176 NLAFTKAPG-T-----------WRWMLGVAGLPAVVQFGL-MMMLPESPRWLYRQNKVDEARAILEKIYPADQVEEEVNL  242 (576)
Q Consensus       176 ~~~l~~~~~-~-----------Wr~~f~v~~~~~~~~~~~-~~~l~esp~~l~~~~~~~~~~~~l~~i~~~~~~~~~~~~  242 (576)
                      +..+..... |           +..+-|+.+++.++.++. ..++.|.++....++..++.               +   
T Consensus       185 q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~~~~~~~~~~~~~~---------------~---  246 (488)
T KOG2325|consen  185 QLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKEVYRGIIDKKKRSVE---------------E---  246 (488)
T ss_pred             HHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheeecccCccccccccch---------------h---
Confidence            988765321 1           234667777777777666 45577765432111110000               0   


Q ss_pred             HHHHHHhhhhhhcccchhhHHHhhhhcccchhhhhhHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcCCchhHHHHHHHHH
Q 008137          243 LKQSVENEKAEEGLIGKDMISRLKGAFGNKIVRRGLYAGVTVQVAQQFVGINTVMYYSPTIVQFAGFASKSTALALSLVT  322 (576)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (576)
                            ++            .+..+.-..+.-+...+..+.......+.....-....+..+..++..+.+.........
T Consensus       247 ------~~------------~~~~~~~~~~~d~~~~~vc~~~~~~~~~~~~~iet~~~~~~m~~y~w~~~~av~~~gi~~  308 (488)
T KOG2325|consen  247 ------EK------------SDIEKVKKPKLDWVAVLVCIFLRFVVNFIATTIETLSSALTMVMYGWTGSEAVLYNGITL  308 (488)
T ss_pred             ------hc------------cchhhhccCChhHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHhccccchHHHhhhhHH
Confidence                  00            000000011111233344444444444444444555566666777776666655555555


Q ss_pred             hHHHHHHHHHHH---Hhh-cccCChHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccccccCCCCCCCCcccccCCCC
Q 008137          323 SGLNALGSIVSM---AFV-DKYGRRRLMIVSMFGLSSCLVALAVVFFQAAIHAPTVSQIESSHFGGNNTCPAYITDGNAK  398 (576)
Q Consensus       323 ~~~~~ig~~~~g---~l~-dk~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  398 (576)
                      .+.+.+...+..   +.. .++.+|..+..+++....+..+..+.......                             
T Consensus       309 ~~~g~ls~~~~l~~~f~~l~~i~~r~~~~~g~l~~f~~~~i~~yp~~~~s~-----------------------------  359 (488)
T KOG2325|consen  309 SISGILSVILLLLYIFTRLGKIDKRRIILLGFLIFFLSYYIFTYPWGFYSG-----------------------------  359 (488)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhccceeeeehHHHHHHhhheeeeecccccc-----------------------------
Confidence            555544443332   222 23345666666655544444443333221110                             


Q ss_pred             cccccccccccccccCCCCCCCCCCcccccccccccccccccccccccCCCCcchhHHHHHHHHHHHHhcCCcccccchh
Q 008137          399 SWNCMDCLKAKCGFCAHKGNEYLPGACLIDEKSTDTLCSDEHRTYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIV  478 (576)
Q Consensus       399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  478 (576)
                                                -+...+++.+.|+.+++.||-..+-.+..........+++..+.. +.....++
T Consensus       360 --------------------------pv~~~~~~~~~~~~~~y~wc~~~~~v~~~~~l~~~i~~~g~~~P~-~~~~~~tl  412 (488)
T KOG2325|consen  360 --------------------------PVQPYNTTYAGCDFEEYSWCDTTTAVPLILYLISFIVVFGIAFPF-ISTALDTL  412 (488)
T ss_pred             --------------------------ccccccccccCcCcccchhhccCcccChhhheeehhheecccccc-ccchHHHH
Confidence                                      122233788999999999997544443332222222233333321 12234466


Q ss_pred             ccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHh
Q 008137          479 NSEIYPLRYRGVGGGIAAVSNWTSNLIVSLTFLTLTEALGSAGTFLLFAGFSLLGLVAIYL  539 (576)
Q Consensus       479 ~~e~~p~~~rg~~~g~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~  539 (576)
                      -+|+..++.+++..|+.......+..++|++...+....|.+..+.+.+...++.......
T Consensus       413 ySkiLgp~~q~~~qg~~~~~~s~~~~~~~~~~t~~~~~~g~~~v~~~~~~~~l~~~~l~~~  473 (488)
T KOG2325|consen  413 YSKILGPRDQGTMQGVFSISGSIARVVGPIFSTAIFTLSGPRPVWIILLCLLLVVAALWIV  473 (488)
T ss_pred             HHHHhCCccccceeEEEEeccchhhhhhHHHHhhhHHhcCccHHHHHHHHHHHHHHHHHHH
Confidence            6899999999999999999999999999999999999999987777766655555444333

>PRK09669 putative symporter YagG; Provisional

Probab=99.84  E-value=2.5e-18  Score=185.52  Aligned_cols=336  Identities=15%  Similarity=0.063  Sum_probs=213.1

Q ss_pred             HHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhc----cCch-HHHHHHHHHHHHHHHHHHhcch-----
Q 008137           50 GALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDR----FGRK-ISLLGADVLFFIGAIIMAIAPQ-----  119 (576)
Q Consensus        50 ~~~~~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr----~Grr-~~~~~~~~~~~i~~~~~~~~~~-----  119 (576)
                      .+...+.+++|++....   |++.++..+..++..++.|+++||    +||| +.++.+.+..+++.++....++     
T Consensus        31 ~l~~~~t~~~gls~~~~---g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p~~~~~~  107 (444)
T PRK09669         31 FLAYFYTDVFGLSAAIM---GTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTPDFGATG  107 (444)
T ss_pred             HHHHHHHHhcCCCHHHH---HHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCcch
Confidence            34555778899998888   999999999999999999999998    7874 5566677777777765555443     


Q ss_pred             -HHHHHHHHHHHHhhhhhhhhhHHHHHHhcc-CcchhhHHHHHHHHHHHHHHHHHHHHHHHhcCC------CchhHHHHH
Q 008137          120 -PWVIILGRIFVGLGVGMASMTAPLYISEAS-PAKIRGALVSANGFLITGGQFLAYLINLAFTKA------PGTWRWMLG  191 (576)
Q Consensus       120 -~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~-~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~------~~~Wr~~f~  191 (576)
                       .+.+++..++.+++.......-.++.+|+. ++++|++..++......+|..+++.+...+...      ..+|+..+.
T Consensus       108 ~~~~~~~~~~l~~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~  187 (444)
T PRK09669        108 KIIYACVTYILLSLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDILGKGDEQKGYFYAMM  187 (444)
T ss_pred             HHHHHHHHHHHHHHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHH
Confidence             456666677777776666767778899998 568899888888888888777766544332211      124888888


Q ss_pred             HhHHHHHHHHHH-HhhccCChhHHhhcCCHHHHHHHHHHhCCchhhhHHHHHHHHHHHhhhhhhcccchhhHHHhhhhcc
Q 008137          192 VAGLPAVVQFGL-MMMLPESPRWLYRQNKVDEARAILEKIYPADQVEEEVNLLKQSVENEKAEEGLIGKDMISRLKGAFG  270 (576)
Q Consensus       192 v~~~~~~~~~~~-~~~l~esp~~l~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (576)
                      +.++++++..+. ++..+|.+...  +++                                      ..+..++.+..++
T Consensus       188 i~~ii~~v~~~~~~~~~~e~~~~~--~~~--------------------------------------~~~~~~~~~~~~~  227 (444)
T PRK09669        188 VMGLLGVVLFFCCFFMTKERYTPE--VDN--------------------------------------SSSVWKDLKLLLG  227 (444)
T ss_pred             HHHHHHHHHHHHHhCCeEEecCCC--CcC--------------------------------------CCCHHHHHHHHhC
Confidence            888777665544 33344432100  000                                      0011244566677


Q ss_pred             cchhhhhhHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcCCchhHHHHHHHHHhHHHHHHHHHHHHhhcccCChHHHHHHH
Q 008137          271 NKIVRRGLYAGVTVQVAQQFVGINTVMYYSPTIVQFAGFASKSTALALSLVTSGLNALGSIVSMAFVDKYGRRRLMIVSM  350 (576)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dk~grr~~~~~~~  350 (576)
                      ++.++......+.....     ........+++.+.... +......+.....+..+++.++.++++||+|+|+.+..+.
T Consensus       228 n~~~~~l~~~~~~~~~~-----~~~~~~~~~y~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~  301 (444)
T PRK09669        228 NSQWRIMFIFNVVLLTA-----VVTRGGATLYYVNYVLL-RPDLATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTI  301 (444)
T ss_pred             CchHHHHHHHHHHHHHH-----HHHHhhhhheeeeeecC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHH
Confidence            77655432222222121     22222222333333332 3334444445556777888899999999999999988776


Q ss_pred             HHHHHHHHHHHHHHHHhhhcCCCccccccccCCCCCCCCcccccCCCCcccccccccccccccCCCCCCCCCCccccccc
Q 008137          351 FGLSSCLVALAVVFFQAAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAHKGNEYLPGACLIDEK  430 (576)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  430 (576)
                      ++..++.+.+....                                                                  
T Consensus       302 ~~~~~~~~~~~~~~------------------------------------------------------------------  315 (444)
T PRK09669        302 VAFVILSALIFFIP------------------------------------------------------------------  315 (444)
T ss_pred             HHHHHHHHHHHHhC------------------------------------------------------------------
Confidence            65554333222210                                                                  


Q ss_pred             ccccccccccccccccCCCCcchhHHHHHHHHHHHHhcCCcccccchhcccccc-------ccccccchhHHHHHHHHHH
Q 008137          431 STDTLCSDEHRTYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEIYP-------LRYRGVGGGIAAVSNWTSN  503 (576)
Q Consensus       431 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p-------~~~rg~~~g~~~~~~~~g~  503 (576)
                                         .+..+..++...+.+.+.+ ...+..+++.+|..+       .+..|...|+.+.+..+|.
T Consensus       316 -------------------~~~~~~~~~~~~i~g~~~~-~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~  375 (444)
T PRK09669        316 -------------------PSNVWLIFALNILFNFIQN-LTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGL  375 (444)
T ss_pred             -------------------cchHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHH
Confidence                               0011333333334444443 334567778888764       3345667888899999999


Q ss_pred             HHHHHHHHHHHHhhccc
Q 008137          504 LIVSLTFLTLTEALGSA  520 (576)
Q Consensus       504 ~~~~~~~~~l~~~~g~~  520 (576)
                      .+++.+.|.+.+..|+.
T Consensus       376 alg~~i~g~ll~~~Gy~  392 (444)
T PRK09669        376 AIGGAVVGWILAWVDYV  392 (444)
T ss_pred             HHHHHHHHHHHHHcCCC
Confidence            99999999999988763

>PRK10429 melibiose:sodium symporter; Provisional

Probab=99.83  E-value=5e-18  Score=184.67  Aligned_cols=357  Identities=12%  Similarity=0.027  Sum_probs=220.5

Q ss_pred             HHHHhhhhhhhhHHHHHHH-HHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhh----ccCc-hHHHHHHHHHHHH
Q 008137           36 IGGLLFGYDTGVISGALLY-IKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWIND----RFGR-KISLLGADVLFFI  109 (576)
Q Consensus        36 l~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~d----r~Gr-r~~~~~~~~~~~i  109 (576)
                      ++.+...+..+.+++.++. +.+.+|++....   |.+..+.-+--++..++.|+++|    |+|| |+.++++.+..++
T Consensus        13 ~g~~~~~~~~~~~~~~l~~yyt~v~Gls~~~v---g~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i   89 (473)
T PRK10429         13 FGAFGKDFAIGIVYMYLMYYYTDVVGLSVGLV---GTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSV   89 (473)
T ss_pred             cchhHHhHHHHHHHHHHHHHHHHhcCCCHHHH---HHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHH
Confidence            4444455555555555444 555668888777   99999999999999999999999    6698 5666778877777


Q ss_pred             HHHHHHhcc------hHHHHHHHHHHHHhhhhhhhhhHHHHHHhcc-CcchhhHHHHHHHHHHHHHHHHHHHHHHHh---
Q 008137          110 GAIIMAIAP------QPWVIILGRIFVGLGVGMASMTAPLYISEAS-PAKIRGALVSANGFLITGGQFLAYLINLAF---  179 (576)
Q Consensus       110 ~~~~~~~~~------~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~-~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l---  179 (576)
                      +.+++-..+      .+..+++.-++.+++.....+.-.++..|.. ++++|.+..++-..+.++|.++.+.+...+   
T Consensus        90 ~~~llf~~p~~~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~~~~  169 (473)
T PRK10429         90 VLFLLFSAHLFEGTAQYVFVCVTYILWGMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFTLPFVNY  169 (473)
T ss_pred             HHHHHHcCCCCCccHHHHHHHHHHHHHHHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            766554333      1345566667778888888888889999998 689999999887777777765554443322   


Q ss_pred             -cC--CCchhHHHHHHhHHHHHHHHHH-HhhccCChhHHhhcCCHHHHHHHHHHhCCchhhhHHHHHHHHHHHhhhhhhc
Q 008137          180 -TK--APGTWRWMLGVAGLPAVVQFGL-MMMLPESPRWLYRQNKVDEARAILEKIYPADQVEEEVNLLKQSVENEKAEEG  255 (576)
Q Consensus       180 -~~--~~~~Wr~~f~v~~~~~~~~~~~-~~~l~esp~~l~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~  255 (576)
                       ..  ...+|++...+.+++.++..+. ++..+|.+.....+.+                                +++ 
T Consensus       170 ~g~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~e~~~~~~~~~~--------------------------------~~~-  216 (473)
T PRK10429        170 VGGGDRGFGFQMFTLVLIAFFIVSTIITLRNVHEVYSSDNQVSA--------------------------------EGS-  216 (473)
T ss_pred             hCCCchhhhHHHHHHHHHHHHHHHHHHHHcCceecCCccccccc--------------------------------ccc-
Confidence             11  1114777777777776655444 4445664311000000                                000 


Q ss_pred             ccchhhHHHhhhhcccchhhhhhHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcCCchhHHHHHHHHHhHHHHHHHHHHHH
Q 008137          256 LIGKDMISRLKGAFGNKIVRRGLYAGVTVQVAQQFVGINTVMYYSPTIVQFAGFASKSTALALSLVTSGLNALGSIVSMA  335 (576)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~  335 (576)
                        ..+..+..+..++|+.++..+     ...+...........+.+++.+.... +....+.+.....+..+++.++.++
T Consensus       217 --~~~~~~~~~~~~~n~~~~~ll-----~~~~~~~~~~~~~~~~~~y~~~y~~~-~~~~~~~~~~~~~i~~ii~~~~~~~  288 (473)
T PRK10429        217 --HLTLKDIVALIYKNDQLSCLL-----GMALAYNIASNIINGFAIYYFTYVIG-DADLFPYYLSYAGAANLVTLILFPR  288 (473)
T ss_pred             --CCCHHHHHHHHhcCHHHHHHH-----HHHHHHHHHHHHHhhheeeEEEEECC-CHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              001113344455555443322     22222223334444445555555444 3444455555666778899999999


Q ss_pred             hhcccCChHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccccccCCCCCCCCcccccCCCCcccccccccccccccCC
Q 008137          336 FVDKYGRRRLMIVSMFGLSSCLVALAVVFFQAAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAH  415 (576)
Q Consensus       336 l~dk~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  415 (576)
                      +.||+|+|+.+..++++.+++.+.+.......                                                
T Consensus       289 l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------------------  320 (473)
T PRK10429        289 LVKSLSRRILWAGASIFPVLSCGVLLLMGLAA------------------------------------------------  320 (473)
T ss_pred             HHHHcCcHHHHHHHHHHHHHHHHHHHHHhccC------------------------------------------------
Confidence            99999999998877776565554443221100                                                


Q ss_pred             CCCCCCCCcccccccccccccccccccccccCCCCcchhHHHHHHHHHHHHhcCCcccccchhcccccc-------cccc
Q 008137          416 KGNEYLPGACLIDEKSTDTLCSDEHRTYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEIYP-------LRYR  488 (576)
Q Consensus       416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p-------~~~r  488 (576)
                                                        .+..+..++...+.+.+.+ ...+..+++.+|..+       .+..
T Consensus       321 ----------------------------------~~~~~~~~i~~~l~g~~~~-~~~~~~~am~ad~id~~e~~tG~R~~  365 (473)
T PRK10429        321 ----------------------------------PHNALLIVIAGILLNIGTA-LFWVLQVIMVADTVDYGEYKLGIRCE  365 (473)
T ss_pred             ----------------------------------chhHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhhhhhhHhcCccch
Confidence                                              0011333333333333333 223445667788754       3445


Q ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 008137          489 GVGGGIAAVSNWTSNLIVSLTFLTLTEALGS  519 (576)
Q Consensus       489 g~~~g~~~~~~~~g~~~~~~~~~~l~~~~g~  519 (576)
                      |...|...+...++..+++.+.|.+.+..|+
T Consensus       366 G~~~s~~~~~~K~~~al~~~i~g~~l~~~Gy  396 (473)
T PRK10429        366 SIAYSVQTMVVKGGSAFAAFFIGVVLGLIGY  396 (473)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            6688999999999999999999999987776

>TIGR00788 fbt folate/biopterin transporter

Probab=99.82  E-value=1.4e-18  Score=188.38  Aligned_cols=403  Identities=14%  Similarity=-0.002  Sum_probs=246.7

Q ss_pred             HHHHHHHHHHhhhhhhhhHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccC-----chHHHHHHH
Q 008137           30 LALSAGIGGLLFGYDTGVISGALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFG-----RKISLLGAD  104 (576)
Q Consensus        30 ~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~G-----rr~~~~~~~  104 (576)
                      .+.+++..++..++.......+.|.+.+++|.+..+.   +...+...+...+-.+ +|.++||++     ||+.++++.
T Consensus        27 ~~~~~~~~y~~qGl~~l~~~~~~~~l~~~lg~s~~~i---~~~~sl~~lpw~~K~l-~g~l~D~~~i~G~rRr~~l~~~~  102 (468)
T TIGR00788        27 VLAIGLQVLFVKGIAGLMRLPLSPMLTDDLGLDGARY---QRLVGLSSLGWALKPF-AGVMSDTFPLFGYTKRWYLVLSG  102 (468)
T ss_pred             HHHHHHHHHHHhhHHHHhhhhhhHHHHHhcCCCHHHH---HHHHHHHHHHHHHHHH-HHHHHHhcCCCCccchHHHHHHH
Confidence            3444455567788874444455555666899999998   8999999999999665 999999998     778888887


Q ss_pred             HHHH-HHHHHHHhcchHHHHH-HHHHHHHhhhhhhhhhHHHHHHhccCcchhhH---HHHHHHHHHHHHHHHHHHHHHHh
Q 008137          105 VLFF-IGAIIMAIAPQPWVII-LGRIFVGLGVGMASMTAPLYISEASPAKIRGA---LVSANGFLITGGQFLAYLINLAF  179 (576)
Q Consensus       105 ~~~~-i~~~~~~~~~~~~~l~-~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~---~~~~~~~~~~~G~~l~~~l~~~l  179 (576)
                      ++.+ ++....+..++..... +.+++.+++.+...+.+..+..|..+ +++..   ..+......++|.++|+.+++.+
T Consensus       103 ~l~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg~~l~G~l  181 (468)
T TIGR00788       103 LLGSAILYGLLPGKVSSAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLISSLLGGPL  181 (468)
T ss_pred             HHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHHHHHHHHH
Confidence            7763 4434444445544444 48899999999999999999999998 54443   33344444568999999999999


Q ss_pred             cCCCchhHHHHHHhHHHHHHHHHHHhhccCChhHHhhcCCHHHHHHHHHHhCCchhhhHHHHHHHHHHHhhhhhhcccch
Q 008137          180 TKAPGTWRWMLGVAGLPAVVQFGLMMMLPESPRWLYRQNKVDEARAILEKIYPADQVEEEVNLLKQSVENEKAEEGLIGK  259 (576)
Q Consensus       180 ~~~~~~Wr~~f~v~~~~~~~~~~~~~~l~esp~~l~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (576)
                      .+..+ ||..|++.+++.++..+..++++|++.....+.+.++....              ..........       .+
T Consensus       182 ~~~~~-~~~~f~~~a~l~ll~~~~~~~~~E~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~-------~~  239 (468)
T TIGR00788       182 LDKTL-TRILFLITAALLLLQLFVSNLSKERRAFVRPRIGTYLEMNM--------------ALLTLGVLAN-------VK  239 (468)
T ss_pred             HHhcC-cchHHHHHHHHHHHHHHHHHhcccccccccccccccchhhh--------------hhhhhhHHHH-------HH
Confidence            88777 99999999888877766667778863100000000000000              0000000000       00


Q ss_pred             hhHHHhhhhcccchhhhhhHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcCCchhHHHHHHHHHhHHHHHHHHHHHHhhcc
Q 008137          260 DMISRLKGAFGNKIVRRGLYAGVTVQVAQQFVGINTVMYYSPTIVQFAGFASKSTALALSLVTSGLNALGSIVSMAFVDK  339 (576)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dk  339 (576)
                      +...+.++.++++..++.+...++.   .. ........+.-...+..+. ++...+....+..++.+++..+.+++.+|
T Consensus       240 ~~~~~l~~~l~~~~i~~~l~fifl~---~~-~~~~~~~~~f~~~~~~lG~-s~~~~G~~~~~~~v~~i~g~~~~~~~~~~  314 (468)
T TIGR00788       240 VQILGLRGAIQLLEIAKPLIFIFLS---YA-NLPGASGSVFCATTQCLPG-GPSFSGMSKVVGNLGSLCGVGGYDRFLKT  314 (468)
T ss_pred             HHHHHHHHHHhcHHHHHHHHHHHHH---Hh-hcCCCCceeEEEEcccCCC-CcchhhhHHHHHHHHHHHHHHHHHHHHhh
Confidence            0012333344444433321111110   01 1111111100011123344 77888888888889999999999999999


Q ss_pred             cCChHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccccccCCCCCCCCcccccCCCCcccccccccccccccCCCCCC
Q 008137          340 YGRRRLMIVSMFGLSSCLVALAVVFFQAAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAHKGNE  419 (576)
Q Consensus       340 ~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  419 (576)
                      ++.|+++.++.++.+++.....+.......                                                  
T Consensus       315 ~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~--------------------------------------------------  344 (468)
T TIGR00788       315 FPYRLLFGVTTLLYTLSSLFDLILVKRWNL--------------------------------------------------  344 (468)
T ss_pred             CCHHHHHHHHHHHHHHHHhCceeeeecccc--------------------------------------------------
Confidence            999999988888777766543221110000                                                  


Q ss_pred             CCCCcccccccccccccccccccccccCCCCcchhHHHHHHHHHHHHhcCCcccccchhccccccccccccchhHHHHHH
Q 008137          420 YLPGACLIDEKSTDTLCSDEHRTYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEIYPLRYRGVGGGIAAVSN  499 (576)
Q Consensus       420 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~  499 (576)
                                               ..+.|.  .+.......+...++++...+. ..+..+..|++.+|+..++.+.+.
T Consensus       345 -------------------------~~gi~~--~~~~~~~~~l~~~~~g~~~~~~-~~~~~~~~p~~~egt~~al~~s~~  396 (468)
T TIGR00788       345 -------------------------AFGISD--EVFVLGDSIIAEVLAQLKFMPF-LVLLARLCPSGCESSVFALLASIL  396 (468)
T ss_pred             -------------------------ccCCCC--eeeeeehhHHHHHHHHHHHccH-HHHHHHhCCCCceehHHHHHHHHH
Confidence                                     000011  0111222233333333333333 577889999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhc-----cchhhHHHHHHHH---HHHHHHHhhccC
Q 008137          500 WTSNLIVSLTFLTLTEALG-----SAGTFLLFAGFSL---LGLVAIYLLVPE  543 (576)
Q Consensus       500 ~~g~~~~~~~~~~l~~~~g-----~~~~~~~~~~~~~---i~~~~~~~~~~~  543 (576)
                      ++|..+++.+.+.+.+..|     ++..+....+..+   +.+.+. .++|+
T Consensus       397 ~lg~~v~~~~gg~l~~~~g~~~~~~~~~~~~i~i~~~~~l~~l~~~-~llP~  447 (468)
T TIGR00788       397 HLGSSVSGFLGVLLMETIGITCDNSNNLWLLILGHSLAPLLPLPLL-HLLPR  447 (468)
T ss_pred             HHHHHHHHHHHHHHHHHcCCCcccccchHHHHHHHHHHHHHHHHHH-HhCCC
Confidence            9999999999999999888     5544443333332   233333 36776

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=99.81  E-value=2.4e-16  Score=169.99  Aligned_cols=363  Identities=20%  Similarity=0.186  Sum_probs=239.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhccCchHHH-HHHHHHHHHHHHHHHhc-c-hHHHHHHHHHHHHhhhhhhhhhHHHH
Q 008137           68 LQELIVSMAVAGAIFGAGFGGWINDRFGRKISL-LGADVLFFIGAIIMAIA-P-QPWVIILGRIFVGLGVGMASMTAPLY  144 (576)
Q Consensus        68 ~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~-~~~~~~~~i~~~~~~~~-~-~~~~l~~~R~l~G~~~g~~~~~~~~~  144 (576)
                      +.++..++..+..++..++.|.++|+-|+||.+ .+..++..+++++..+. + +++...+.-++.-++.+.....-.++
T Consensus        71 ~~~~~~sis~l~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v~~~~~~~~~~l~iia~v~~~~~~vfyna~  150 (477)
T PF11700_consen   71 LWLYANSISGLLQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWFVSPGQWWLALVLFIIANVGYEASNVFYNAY  150 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            447889999999999999999999999876554 45555556666666664 3 34444555566667888888888999


Q ss_pred             HHhccCcchh--------------------------hHHHHHHHHHHHHHHHHHHHHHHHhcCCCc-------hhHHHHH
Q 008137          145 ISEASPAKIR--------------------------GALVSANGFLITGGQFLAYLINLAFTKAPG-------TWRWMLG  191 (576)
Q Consensus       145 i~e~~~~~~R--------------------------~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~-------~Wr~~f~  191 (576)
                      +.|..+++++                          ++..+.-.....+|.++..++...+....+       +-|..+.
T Consensus       151 LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~~~~~~~~r~~~~  230 (477)
T PF11700_consen  151 LPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGSTASNTWAIRVAFL  230 (477)
T ss_pred             hHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccchhhhHHHH
Confidence            9999999888                          888888888888888887777666533222       2488888


Q ss_pred             HhHHHHHHHHHH-HhhccCChhHHhhcCCHHHHHHHHHHhCCchhhhHHHHHHHHHHHhhhhhhcccchhhHHHhhhhcc
Q 008137          192 VAGLPAVVQFGL-MMMLPESPRWLYRQNKVDEARAILEKIYPADQVEEEVNLLKQSVENEKAEEGLIGKDMISRLKGAFG  270 (576)
Q Consensus       192 v~~~~~~~~~~~-~~~l~esp~~l~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (576)
                      +.++.-++..+. ++++||.|+....+......+...                               ++..+..++..+
T Consensus       231 ~~a~ww~vfsiP~~~~~~~~~~~~~~~~~~~~~~~g~-------------------------------~~l~~t~k~~~~  279 (477)
T PF11700_consen  231 IVALWWLVFSIPLFLWLPDRPGPRPLPSGSSYLRFGF-------------------------------KRLWRTFKEIRK  279 (477)
T ss_pred             HHHHHHHHHHHHHHHhCCCCCCCCCCCcchhHHHHHH-------------------------------HHHHHHHHHHHh
Confidence            877776555444 566787765211111101001000                               111123333322


Q ss_pred             cchhhhhhHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcCCchhHHHHHHHHHhHHHHHHHHHHHHhhcccCCh--HHHHH
Q 008137          271 NKIVRRGLYAGVTVQVAQQFVGINTVMYYSPTIVQFAGFASKSTALALSLVTSGLNALGSIVSMAFVDKYGRR--RLMIV  348 (576)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dk~grr--~~~~~  348 (576)
                      .+.     ...+++..++..-+..++......|.++..+.+..+...+..+..+.+++|++++|++.||+|.|  +++..
T Consensus       280 ~~~-----~~~fLia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~  354 (477)
T PF11700_consen  280 LRQ-----LFLFLIAYFLYSDGVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLI  354 (477)
T ss_pred             ChH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHH
Confidence            222     22344444555566777777788888765555777777888888999999999999999999988  66665


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhcCCCccccccccCCCCCCCCcccccCCCCcccccccccccccccCCCCCCCCCCccccc
Q 008137          349 SMFGLSSCLVALAVVFFQAAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAHKGNEYLPGACLID  428 (576)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  428 (576)
                      ..++..+..+.-.+.......                                         |                 
T Consensus       355 ~l~~~~~i~~~g~~G~~~~~~-----------------------------------------g-----------------  376 (477)
T PF11700_consen  355 SLILWIIIPLYGLFGFWPSFF-----------------------------------------G-----------------  376 (477)
T ss_pred             HHHHHHHHHHHHHHHhhhccc-----------------------------------------C-----------------
Confidence            554442222211111110000                                         0                 


Q ss_pred             ccccccccccccccccccCCCCcchhHHHHHHHHHHHHhcCCcccccchhccccccccccccchhHHHHHHHHHHHHHHH
Q 008137          429 EKSTDTLCSDEHRTYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEIYPLRYRGVGGGIAAVSNWTSNLIVSL  508 (576)
Q Consensus       429 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~g~~~~~~  508 (576)
                                           .+..|...+...+. +.+..+..+..-++.+|+.|+++.+..+|++...+...++++|+
T Consensus       377 ---------------------~~~~~~f~~~a~~~-G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPl  434 (477)
T PF11700_consen  377 ---------------------LKSPWEFWVLAVLI-GLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPL  434 (477)
T ss_pred             ---------------------cccHHHHHHHHHHH-HHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHH
Confidence                                 01123323333333 33333555677789999999999999999999999999999999


Q ss_pred             HHHHHHHhhc-cchhhHHHHHHHHHHHHHHHhhccCCCCC
Q 008137          509 TFLTLTEALG-SAGTFLLFAGFSLLGLVAIYLLVPETKGL  547 (576)
Q Consensus       509 ~~~~l~~~~g-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  547 (576)
                      +++.+.+..| .+..+....++.++++++. ..++..|++
T Consensus       435 l~g~i~~~tg~~r~g~~~l~~lf~~gl~ll-~~v~~~~g~  473 (477)
T PF11700_consen  435 LFGLITDATGSQRYGFLFLLVLFLIGLILL-FFVDVEKGR  473 (477)
T ss_pred             HHHHHHHHhCCchhHHHHHHHHHHHHHHHH-hhccchhhh
Confidence            9999999987 6677887777877777775 445544443

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=99.81  E-value=1.3e-16  Score=171.81  Aligned_cols=166  Identities=13%  Similarity=0.161  Sum_probs=130.0

Q ss_pred             HHHHHHhhhhhhhhHHHHHHHH-HHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhcc-CchHHHHHHHHHHHHHH
Q 008137           34 AGIGGLLFGYDTGVISGALLYI-KEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRF-GRKISLLGADVLFFIGA  111 (576)
Q Consensus        34 ~~l~~~~~~~~~~~~~~~~~~i-~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~-Grr~~~~~~~~~~~i~~  111 (576)
                      ++...+...+........+|.+ .+++|.++.+.   +.+.+.+.....++.+++|+++||+ |||++++++.++..++.
T Consensus        14 l~~~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~a---~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~   90 (493)
T PRK15462         14 VVALQIWEYFSFYGMRALLILYLTNQLKYDDNHA---YELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGH   90 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHH
Confidence            3334444555555555566665 56689988888   8999999999999999999999999 99999999999999998


Q ss_pred             HHHHhcc-hHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcc--hhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHH
Q 008137          112 IIMAIAP-QPWVIILGRIFVGLGVGMASMTAPLYISEASPAK--IRGALVSANGFLITGGQFLAYLINLAFTKAPGTWRW  188 (576)
Q Consensus       112 ~~~~~~~-~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~--~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~Wr~  188 (576)
                      ++.++.+ +...+.+...+.++|.|...+...++++|.+|++  +|..++++.+.+.++|..++|.+.+++.+..+ ||+
T Consensus        91 lll~~~~~~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~G-w~~  169 (493)
T PRK15462         91 VVLGASEIHPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEYS-WAM  169 (493)
T ss_pred             HHHHHhhcchhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhhC-hHH
Confidence            8777643 2233444445555667777777889999999876  68999999999999999999999999988776 999


Q ss_pred             HHHHhHHHHHHHHHH
Q 008137          189 MLGVAGLPAVVQFGL  203 (576)
Q Consensus       189 ~f~v~~~~~~~~~~~  203 (576)
                      .|.+.++..++.++.
T Consensus       170 ~F~iaaigm~l~li~  184 (493)
T PRK15462        170 GFGLAAVGMIAGLVI  184 (493)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999876644443333

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=99.80  E-value=8.4e-20  Score=175.39  Aligned_cols=390  Identities=17%  Similarity=0.120  Sum_probs=257.0

Q ss_pred             hhhHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhc-cCchHHHHH
Q 008137           24 TPYIMKLALSAGIGGLLFGYDTGVISGALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDR-FGRKISLLG  102 (576)
Q Consensus        24 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr-~Grr~~~~~  102 (576)
                      ..+|...++.+|+-.|-.+++....+.+..++..|.+++..+.   .++.+++.....+-++++|++.|| +|.|..-++
T Consensus        39 l~hr~m~lv~mc~lgfgsyfcyd~p~alq~~fk~d~ni~~akf---tLlYsvYSwPNvVlcffgGflidr~fgir~gtii  115 (459)
T KOG4686|consen   39 LGHRFMALVFMCLLGFGSYFCYDAPGALQIDFKLDSNIEYAKF---TLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTII  115 (459)
T ss_pred             hhhHHHHHHHHHHhcccceeecCCchhhhhhhhcccccceeee---eeeeeeccCCCEEEeeecceeehhhhhhhHHHHH
Confidence            3466777888889899999999999999888999998888888   899999999999999999999997 688877666


Q ss_pred             HHHHHHHHHHHHHh---cchHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 008137          103 ADVLFFIGAIIMAI---APQPWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAF  179 (576)
Q Consensus       103 ~~~~~~i~~~~~~~---~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l  179 (576)
                      -.....++-++.+.   .+.+|.+.++||+.|+|.-...+.-.+|..-|+..||.+.++|+.....-+|..+-..+.+++
T Consensus       116 ~~~fv~~GqliFa~Ggi~~aFw~M~~GRF~FGIGgESlAVaQN~yav~wFKGKELn~vfGlqlSvAR~GstvNf~lm~~l  195 (459)
T KOG4686|consen  116 LCIFVFLGQLIFAAGGISHAFWTMLAGRFLFGIGGESLAVAQNKYAVYWFKGKELNFVFGLQLSVARLGSTVNFLLMPFL  195 (459)
T ss_pred             HHHHHHHHHHHHHhchHHHHHHHHHhhheeeccCchhhhhhhcceeEEEecCccccchhhHHHHHHHhhceeeeeecHHH
Confidence            66666677776654   578999999999999999888888999999999999999999999999999988777777666


Q ss_pred             cCCCchhHHHHHHhHHHHHHHHHHHhh---ccCChhHHhhcC-CHHHHHHHHHHhCCchhhhHHHHHHHHHHHhhhhhhc
Q 008137          180 TKAPGTWRWMLGVAGLPAVVQFGLMMM---LPESPRWLYRQN-KVDEARAILEKIYPADQVEEEVNLLKQSVENEKAEEG  255 (576)
Q Consensus       180 ~~~~~~Wr~~f~v~~~~~~~~~~~~~~---l~esp~~l~~~~-~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~  255 (576)
                      .+..+   ..|- ....+.+.+.+.+-   ...+-.-....+ .++.+++.+.+-.+.                 ..+. 
T Consensus       196 y~~~~---~~~~-~~ghT~LG~~l~~~~~tc~~slical~lg~~D~rAerilh~e~g~-----------------~Ge~-  253 (459)
T KOG4686|consen  196 YDTMG---RMFP-GVGHTLLGLWLCFEVKTCKQSLICALSLGLSDDRAERILHLEEGF-----------------LGEE-  253 (459)
T ss_pred             HHHHH---Hhcc-cchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhcCc-----------------ccCC-
Confidence            54322   1110 00111111111000   000000000000 001111111100000                 0000 


Q ss_pred             ccchhhHHHhhhhcccchhhhhhHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcCCchhHHHHHHHHHhHHHHHHHHHHHH
Q 008137          256 LIGKDMISRLKGAFGNKIVRRGLYAGVTVQVAQQFVGINTVMYYSPTIVQFAGFASKSTALALSLVTSGLNALGSIVSMA  335 (576)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~  335 (576)
                             .++.+   .+.+..+ ++.+...+...++.+.-+....|.++++..+.+...++.+....++.+.+.+++.|.
T Consensus       254 -------pkLtd---v~~f~pp-fw~~~iicv~yyva~fPFi~lg~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~  322 (459)
T KOG4686|consen  254 -------PKLTD---VNTFYPP-FWVLVIICVLYYVAWFPFITLGPMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGA  322 (459)
T ss_pred             -------ccccc---ccccCcc-HHHHHHHHHHHHHHHHHHhhhhHHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHH
Confidence                   01111   1111222 333444455556667778888888888877768888887777778889999999999


Q ss_pred             hhcccCChHHHHHH-HHHHHHHHHHHHHHHHHhhhcCCCccccccccCCCCCCCCcccccCCCCcccccccccccccccC
Q 008137          336 FVDKYGRRRLMIVS-MFGLSSCLVALAVVFFQAAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCA  414 (576)
Q Consensus       336 l~dk~grr~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  414 (576)
                      ++||+|++...+.+ ++....+...+.+..                                                  
T Consensus       323 i~Dk~G~n~~wv~~a~~~tl~~H~~l~Ft~--------------------------------------------------  352 (459)
T KOG4686|consen  323 ISDKYGFNLWWVASACILTLLGHSGLFFTF--------------------------------------------------  352 (459)
T ss_pred             hHhhhcceehhHHHHHHHHHHHhhhHHhhh--------------------------------------------------
Confidence            99999998766543 333333333333321                                                  


Q ss_pred             CCCCCCCCCcccccccccccccccccccccccCCCCcchhHHHHHHHHHHHHhcCCcccccchhccccccccccccchhH
Q 008137          415 HKGNEYLPGACLIDEKSTDTLCSDEHRTYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEIYPLRYRGVGGGI  494 (576)
Q Consensus       415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~~~g~  494 (576)
                                                             |-..+.+.+++..+... ....|..++-+.|.+.-|++.|+
T Consensus       353 ---------------------------------------lsPy~~m~~lGLsysll-AcslWP~va~~vpE~qLGTaygf  392 (459)
T KOG4686|consen  353 ---------------------------------------LSPYTSMTFLGLSYSLL-ACSLWPCVASLVPEEQLGTAYGF  392 (459)
T ss_pred             ---------------------------------------ccHHHHHHHHhhhHHHH-HHHHhhhhhhhCCHHHhcchHHH
Confidence                                                   12233444444444321 22345667788899999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhccc----hhhHHHHHHHHHHHHHHHh
Q 008137          495 AAVSNWTSNLIVSLTFLTLTEALGSA----GTFLLFAGFSLLGLVAIYL  539 (576)
Q Consensus       495 ~~~~~~~g~~~~~~~~~~l~~~~g~~----~~~~~~~~~~~i~~~~~~~  539 (576)
                      ++.+.++|-.+.|+++|.+.|..|.+    .-|+..+.+++....+.+.
T Consensus       393 ~qsIqNLgla~i~Iiag~i~d~~g~y~~le~ffl~~~~~aL~svgil~~  441 (459)
T KOG4686|consen  393 IQSIQNLGLAFIPIIAGFIADGDGSYDNLEAFFLIIGLMALTSVGILFY  441 (459)
T ss_pred             HHHHHhhhhhHHhhhhheeecCCCchhhHHHHHHHHHHHHHHHHHHHhh
Confidence            99999999999999999999887632    2344445555555555443

>PF13347 MFS_2: MFS/sugar transport protein

Probab=99.79  E-value=3.4e-17  Score=175.86  Aligned_cols=338  Identities=15%  Similarity=0.194  Sum_probs=240.9

Q ss_pred             HHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhh----ccCchH-HHHHHHHHHHHHHHHHHhc-c-----
Q 008137           50 GALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWIND----RFGRKI-SLLGADVLFFIGAIIMAIA-P-----  118 (576)
Q Consensus        50 ~~~~~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~d----r~Grr~-~~~~~~~~~~i~~~~~~~~-~-----  118 (576)
                      .+.+.+.+.++++....   |++..+..+-.++..++.|.++|    |+|||| .++++....+++.+++... +     
T Consensus        23 ~~~~f~~~~~gl~~~~~---g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~~   99 (428)
T PF13347_consen   23 YLLYFYTDVLGLSPALA---GLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGLSF   99 (428)
T ss_pred             HHHHHHHHHcCCCHHHH---HHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccchhhh
Confidence            34455667778888777   99999999999999999999999    899765 5556888888888777766 4     


Q ss_pred             --hHHHHHHHHHHHHhhhhhhhhhHHHHHHhccC-cchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCc------hhHHH
Q 008137          119 --QPWVIILGRIFVGLGVGMASMTAPLYISEASP-AKIRGALVSANGFLITGGQFLAYLINLAFTKAPG------TWRWM  189 (576)
Q Consensus       119 --~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~-~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~------~Wr~~  189 (576)
                        ....+.+.-++..++.......-.++..|..+ +++|.+..+.-+.+..+|.++...+.+.+.+..+      +|++.
T Consensus       100 ~~~~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~  179 (428)
T PF13347_consen  100 TAKLVWLFVFYILFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWM  179 (428)
T ss_pred             hhHHHHHHHHHHHHHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHH
Confidence              23445677777788888888888999999997 5789999999999888888766666665554322      59999


Q ss_pred             HHHhHHHHHHHHHH-HhhccCChhHHhhcCCHHHHHHHHHHhCCchhhhHHHHHHHHHHHhhhhhhcccchhhHHHhhhh
Q 008137          190 LGVAGLPAVVQFGL-MMMLPESPRWLYRQNKVDEARAILEKIYPADQVEEEVNLLKQSVENEKAEEGLIGKDMISRLKGA  268 (576)
Q Consensus       190 f~v~~~~~~~~~~~-~~~l~esp~~l~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (576)
                      .++.+++.++..+. .+..+|.++....+                                      ....+..+..+..
T Consensus       180 ~~v~~iv~~v~~~i~~~~~ke~~~~~~~~--------------------------------------~~~~~~~~~~~~~  221 (428)
T PF13347_consen  180 ALVLAIVGLVFFLITFFFVKERSVEVTEQ--------------------------------------EKKISLRDSLRSL  221 (428)
T ss_pred             HHHHHHHHHHHhhhhhheeeecccccccc--------------------------------------ccccccccchhhh
Confidence            99998888877666 45566621100000                                      0001112445666


Q ss_pred             cccchhhhhhHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcCCchhHHHHHHHHHhHHHHHHHHHHHHhhcccCChHHHHH
Q 008137          269 FGNKIVRRGLYAGVTVQVAQQFVGINTVMYYSPTIVQFAGFASKSTALALSLVTSGLNALGSIVSMAFVDKYGRRRLMIV  348 (576)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dk~grr~~~~~  348 (576)
                      ++++.++.     .....+.+..+........++|.+...+.+ ...+.......+..+++.++.++++||+|+|+.+..
T Consensus       222 ~~nr~~~~-----l~~~~~~~~~~~~~~~~~~~y~~~~vl~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~  295 (428)
T PF13347_consen  222 FRNRPFRI-----LLLAFFLQWLAFALMNTFLPYYFTYVLGNE-GLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYII  295 (428)
T ss_pred             cccchHHH-----HHHHHHHHHhhhhhhhhHHHHHHHHHhcCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhh
Confidence            77765543     222333334444555556667777665534 455666677788889999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhcCCCccccccccCCCCCCCCcccccCCCCcccccccccccccccCCCCCCCCCCccccc
Q 008137          349 SMFGLSSCLVALAVVFFQAAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAHKGNEYLPGACLID  428 (576)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  428 (576)
                      +.++.+++.+++.+....                                                              
T Consensus       296 ~~~~~~~~~~~~~~~~~~--------------------------------------------------------------  313 (428)
T PF13347_consen  296 GLLLAALGFLLLFFLGPG--------------------------------------------------------------  313 (428)
T ss_pred             hHHHHHHHHHHHHHHHhh--------------------------------------------------------------
Confidence            999988888876665320                                                              


Q ss_pred             ccccccccccccccccccCCCCcchhHHHHHHHHHHHHhcCCcccccchhcccccc-------ccccccchhHHHHHHHH
Q 008137          429 EKSTDTLCSDEHRTYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEIYP-------LRYRGVGGGIAAVSNWT  501 (576)
Q Consensus       429 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p-------~~~rg~~~g~~~~~~~~  501 (576)
                                             ..+...+...+.+.+.+ ......+++.+|+.+       .+..|...|+.+....+
T Consensus       314 -----------------------~~~~~~i~~~l~gi~~~-~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~  369 (428)
T PF13347_consen  314 -----------------------SPWLVLILFILAGIGYG-AFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKI  369 (428)
T ss_pred             -----------------------hHHHHHHHHHHhHhhhc-ccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHH
Confidence                                   12444555555555554 334567788888876       34468889999999999


Q ss_pred             HHHHHHHHHHHHHHhhccc
Q 008137          502 SNLIVSLTFLTLTEALGSA  520 (576)
Q Consensus       502 g~~~~~~~~~~l~~~~g~~  520 (576)
                      +..+++.+.+.+.+..|+.
T Consensus       370 ~~~la~~i~g~~l~~~Gy~  388 (428)
T PF13347_consen  370 GQGLAGAIVGLLLALVGYD  388 (428)
T ss_pred             HHHHHHHHHHHHHHHhCcC
Confidence            9999999999998876654

>PRK09848 glucuronide transporter; Provisional

Probab=99.79  E-value=2.1e-16  Score=170.77  Aligned_cols=349  Identities=11%  Similarity=0.042  Sum_probs=206.2

Q ss_pred             HHHHhhhhhhhhHHHHH-HHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhcc----CchHHH-HHHHHHHHH
Q 008137           36 IGGLLFGYDTGVISGAL-LYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRF----GRKISL-LGADVLFFI  109 (576)
Q Consensus        36 l~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~----Grr~~~-~~~~~~~~i  109 (576)
                      ++.+..........+.+ +.+.+.+|.+..+.   |.+.++..+..++..++.|+++||.    |||+.. +++.+...+
T Consensus        15 ~g~~~~~~~~~~~~~~l~~y~~~~~gl~~~~~---g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~   91 (448)
T PRK09848         15 LGDVANNFAFAMGALFLLSYYTDVAGVGAAAA---GTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMI   91 (448)
T ss_pred             cchHHhHHHHHHHHHHHHHHHHHHcCCCHHHH---HHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHH
Confidence            34444444444444433 45566678888877   9999999999999999999999996    777644 555554544


Q ss_pred             HHHHH-Hh----cc--hHHHHHHHHHHHHhhhhhhhhhHHHHHHhccC-cchhhHHHHHHHHHHH-----HHHHHHHHHH
Q 008137          110 GAIIM-AI----AP--QPWVIILGRIFVGLGVGMASMTAPLYISEASP-AKIRGALVSANGFLIT-----GGQFLAYLIN  176 (576)
Q Consensus       110 ~~~~~-~~----~~--~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~-~~~R~~~~~~~~~~~~-----~G~~l~~~l~  176 (576)
                      .+++. ..    ++  ..+.+++.-++.+++.+...+...++..|..+ +++|.+..++-..+.+     +|..++|.+.
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~p~i~  171 (448)
T PRK09848         92 FSVLVFWVPTDWSHSSKVVYAYLTYMGLGLCYSLVNIPYGSLATAMTQQPQSRARLGAARGIAASLTFVCLAFLIGPSIK  171 (448)
T ss_pred             HHHHHHhCcCCCCcchHHHHHHHHHHHHHHHHHHhcccHhhhhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44443 21    11  12334455677788888888777777777664 4678887666554433     4555666666


Q ss_pred             HHhcCCCc-hhHHHHHHhHHHHHHHHHH-HhhccCChhHHhhcCCHHHHHHHHHHhCCchhhhHHHHHHHHHHHhhhhhh
Q 008137          177 LAFTKAPG-TWRWMLGVAGLPAVVQFGL-MMMLPESPRWLYRQNKVDEARAILEKIYPADQVEEEVNLLKQSVENEKAEE  254 (576)
Q Consensus       177 ~~l~~~~~-~Wr~~f~v~~~~~~~~~~~-~~~l~esp~~l~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~  254 (576)
                      ........ .|.....+.++++++..+. ....+|++..   +.+.                                  
T Consensus       172 ~~~g~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~e~~~~---~~~~----------------------------------  214 (448)
T PRK09848        172 NSSPEEMVSVYHFWTIVLAIAGMVLYFICFKSTRENVVR---IVAQ----------------------------------  214 (448)
T ss_pred             HhCCCchhhhHHHHHHHHHHHHHHHHHHHHcCcEeccCC---CccC----------------------------------
Confidence            54321111 1222222333333322222 3334554210   0000                                  


Q ss_pred             cccchhhHHHhhhhcccchhhhhhHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcCCchhHHHHHHHHHhHHHHHHHHHHH
Q 008137          255 GLIGKDMISRLKGAFGNKIVRRGLYAGVTVQVAQQFVGINTVMYYSPTIVQFAGFASKSTALALSLVTSGLNALGSIVSM  334 (576)
Q Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g  334 (576)
                          ......++.+++++.++..     ....+..+........+.|+++++..+.+....++......++.+++.++.+
T Consensus       215 ----~~~~~~~~~l~~n~~f~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~  285 (448)
T PRK09848        215 ----PSLKISLQTLKRNRPLFML-----CIGALCVLISTFAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVP  285 (448)
T ss_pred             ----CCHHHHHHHHhCCchHHHH-----HHHHHHHHHHHHHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence                0111345566677665432     2222223333444555667777766554555555544444566778899999


Q ss_pred             HhhcccCChHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccccccCCCCCCCCcccccCCCCcccccccccccccccC
Q 008137          335 AFVDKYGRRRLMIVSMFGLSSCLVALAVVFFQAAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCA  414 (576)
Q Consensus       335 ~l~dk~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  414 (576)
                      ++.||+|+|+.+..+.++..++.+++.+...                                                 
T Consensus       286 ~l~~r~g~~~~~~~g~~~~~i~~~~~~~~~~-------------------------------------------------  316 (448)
T PRK09848        286 GMVARIGKKNTFLIGALLGTCGYLLFFWVSV-------------------------------------------------  316 (448)
T ss_pred             HHHHHhCcHHHHHHHHHHHHHHHHHHHHcCc-------------------------------------------------
Confidence            9999999999999888877777655543210                                                 


Q ss_pred             CCCCCCCCCcccccccccccccccccccccccCCCCcchhHHHHHHHHHHHHhcCCcccccchhccccccc-------cc
Q 008137          415 HKGNEYLPGACLIDEKSTDTLCSDEHRTYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEIYPL-------RY  487 (576)
Q Consensus       415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~-------~~  487 (576)
                                                          ...|...+...+...+.+.. .+..+++.+|..|.       +.
T Consensus       317 ------------------------------------~~~~~~~~~~~l~g~G~~~~-~~~~~al~~~~~~~~~~~~g~r~  359 (448)
T PRK09848        317 ------------------------------------WSLPVALVALAIASIGQGVT-MTVMWALEADTVEYGEYLTGVRI  359 (448)
T ss_pred             ------------------------------------hhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhhhHHhhCccc
Confidence                                                00133233333333333322 23455666676653       34


Q ss_pred             cccchhHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 008137          488 RGVGGGIAAVSNWTSNLIVSLTFLTLTEALGS  519 (576)
Q Consensus       488 rg~~~g~~~~~~~~g~~~~~~~~~~l~~~~g~  519 (576)
                      +|...|+.+....+|..+++.+.+.+.+..|+
T Consensus       360 ~G~~~~~~~~~~klg~aig~~i~g~~l~~~G~  391 (448)
T PRK09848        360 EGLTYSLFSFTRKCGQAIGGSIPAFILGLSGY  391 (448)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            68899999999999999999999998887665

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=99.79  E-value=2.6e-17  Score=171.74  Aligned_cols=379  Identities=14%  Similarity=0.090  Sum_probs=234.6

Q ss_pred             HHHHHhhhhhhhhHHHHHHHHHHh-hccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHH--HHHH
Q 008137           35 GIGGLLFGYDTGVISGALLYIKED-FRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLF--FIGA  111 (576)
Q Consensus        35 ~l~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~--~i~~  111 (576)
                      ++..+...+..++..+.+|...++ -|++.++.   |.+.++..+...+.+++.|.++||+|.|+-++..+.+.  ..+.
T Consensus        13 s~~~f~~Ff~~gi~~pF~~iWL~~~~GLs~~~i---G~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~i~~l~~l~~p   89 (412)
T PF01306_consen   13 SLFYFFYFFIWGIFLPFFPIWLTQVAGLSGTEI---GIIFSAGSLFALLAQPVYGFISDKLGLKKHLLWFIAILLLLFGP   89 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHH---HHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHHHHHHHHTCHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHccccCCCHHHH---HHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHHHHHHHHHHHH
Confidence            344455666678888888887765 89999999   99999999999999999999999999766554433322  2222


Q ss_pred             HH-HHhc----chH-HHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCch
Q 008137          112 II-MAIA----PQP-WVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFTKAPGT  185 (576)
Q Consensus       112 ~~-~~~~----~~~-~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~  185 (576)
                      +. ..+.    .|. ...+++-...|++.....|+.-+++.++.  ++.+.-.|-..+..++|.+++..++|.+.+.  +
T Consensus        90 ff~~v~~pll~~n~~lg~iig~i~l~~~f~~~~~~~Ea~~er~s--r~~~feYG~~R~wGSig~ai~s~~~G~L~~i--~  165 (412)
T PF01306_consen   90 FFIYVFGPLLQSNFWLGAIIGGIYLGLVFNAGVPLSEAYAERVS--RRNGFEYGRARMWGSIGFAIASLLAGILFNI--N  165 (412)
T ss_dssp             HHHHTHHHHHHTT-HHHHHHTTTTTTTTTTTHHHHHHHHHHHHH--HHHSS-HHHHHHHHHHHHHHHHHHHHHHHHH--H
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHH--HHhcCCcchHHHHhhHHHHHHHHHhheeeee--C
Confidence            22 2222    222 22333334445555555666666665554  2334556667788899999999999988764  3


Q ss_pred             hHHHHHHhHHHHHHHHHHHhhc-cCChhHHhhcCCHHHHHHHHHHhCCchhhhHHHHHHHHHHHhhhhhhcccchhhHHH
Q 008137          186 WRWMLGVAGLPAVVQFGLMMML-PESPRWLYRQNKVDEARAILEKIYPADQVEEEVNLLKQSVENEKAEEGLIGKDMISR  264 (576)
Q Consensus       186 Wr~~f~v~~~~~~~~~~~~~~l-~esp~~l~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (576)
                      -+..||+....+++..++.+.. |+.++.....+..+. +                                .++...++
T Consensus       166 p~~~fwi~s~~~~il~lll~~~~~~~~~~~~~~~~~~~-~--------------------------------~~~~~~~~  212 (412)
T PF01306_consen  166 PNIIFWIASAAAIILLLLLLLLKPDVPPQAEVADALGA-K--------------------------------KDKVSLKD  212 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSS---SSSSS-SSTTSSS---------------------------------------HHH
T ss_pred             ccHHHHHHHHHHHHHHHHHHHcCCcCchhhhhhccccc-C--------------------------------CCCCcHHH
Confidence            5778888776666555443333 333221111000000 0                                00000134


Q ss_pred             hhhhcccchhhhhhHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcCC---chhHHHHHHHHHhHHHHHHHHHHHHhhcccC
Q 008137          265 LKGAFGNKIVRRGLYAGVTVQVAQQFVGINTVMYYSPTIVQFAGFA---SKSTALALSLVTSGLNALGSIVSMAFVDKYG  341 (576)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~ig~~~~g~l~dk~g  341 (576)
                      ..++++++.+|.-     .+........+..+-...+.|.......   +....+.+..+..+..++...+..++.+|+|
T Consensus       213 ~~~l~k~~~fw~~-----~l~v~g~~~~Y~vfdqqf~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig  287 (412)
T PF01306_consen  213 VLSLFKMRNFWFF-----VLFVIGVAAIYDVFDQQFPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRIG  287 (412)
T ss_dssp             HHHHTTSHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred             HHHHhcchhHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            5566666655442     2222222222333333344555443321   3445677778888888899999999999999


Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccccccCCCCCCCCcccccCCCCcccccccccccccccCCCCCCCC
Q 008137          342 RRRLMIVSMFGLSSCLVALAVVFFQAAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAHKGNEYL  421 (576)
Q Consensus       342 rr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  421 (576)
                      .|+.++++..++.+=.++.++...                                                        
T Consensus       288 ~k~~Lllag~i~~iRi~~~~~~~~--------------------------------------------------------  311 (412)
T PF01306_consen  288 AKNLLLLAGVIMAIRIIGSGFATN--------------------------------------------------------  311 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHT--S--------------------------------------------------------
T ss_pred             hHhHHHHHHHHHHHHHHHHhhhcc--------------------------------------------------------
Confidence            999999988888887776665532                                                        


Q ss_pred             CCcccccccccccccccccccccccCCCCcchhHHHHHHHHHHHHhcCCcccccchhccccccccccccchhHH-HHHHH
Q 008137          422 PGACLIDEKSTDTLCSDEHRTYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEIYPLRYRGVGGGIA-AVSNW  500 (576)
Q Consensus       422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~~~g~~-~~~~~  500 (576)
                                                     .|.....=.+-...+..... ...-++++.+|++..++...+. +....
T Consensus       312 -------------------------------~~~i~~~klLH~~e~~l~lv-a~fkYI~~~fd~rlsAt~y~v~~~~~~~  359 (412)
T PF01306_consen  312 -------------------------------PWVISLIKLLHALEFPLLLV-AAFKYITAHFDKRLSATLYLVGFQFAKQ  359 (412)
T ss_dssp             -------------------------------HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHS-GGGHHHHHHHHHTTTHH
T ss_pred             -------------------------------hHHHHHHHHHHHHHHHHHHH-HHHHHHHHhCCHhHHHHHHHHHHHHHHH
Confidence                                           13333333333333322222 2235788999999988888885 67889


Q ss_pred             HHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHhhccCCCC
Q 008137          501 TSNLIVSLTFLTLTEALGSAGTFLLFAGFSLLGLVAIYLLVPETKG  546 (576)
Q Consensus       501 ~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~  546 (576)
                      +|.++.+.+.|.++|+.|++.+|++++.+.++..++..+.+++.++
T Consensus       360 ~~~~i~s~~~G~lyd~~G~~~tylimg~iv~~~~li~~f~l~~~~~  405 (412)
T PF01306_consen  360 IGIIILSPLAGYLYDRIGFQHTYLIMGLIVLPFTLISAFTLKKDKK  405 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--SSS
T ss_pred             HHHHHHhhhHHhhHhhcCcHHHHHHHHHHHHHHHHHheeeecCCCc
Confidence            9999999999999999999999999999988888888777765443

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.78  E-value=9.3e-17  Score=164.99  Aligned_cols=400  Identities=14%  Similarity=0.102  Sum_probs=274.4

Q ss_pred             hhchhhHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHH
Q 008137           21 VWTTPYIMKLALSAGIGGLLFGYDTGVISGALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISL  100 (576)
Q Consensus        21 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~  100 (576)
                      .+..++||.++++.++-.+.+++....+++.-.+....|+ +.+..   -|..-+|.+.+....+++-|+.|++|-|...
T Consensus        37 ~rVy~rRW~vLl~~slL~~SN~~qWI~ya~i~n~~~~~Yg-s~~~~---~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~  112 (480)
T KOG2563|consen   37 HRVYPRRWVVLLAFSLLNFSNGMQWIQYAPINNYVNSFYG-SSSAA---DWLSMIYMVVSVPFGFAAMWILDKFGLRTAL  112 (480)
T ss_pred             cccchhHhHHHHHHHHHHhcCcchheeehhHHHHHHHHhc-chHHH---HHHHHHHHHHHHHHhhHHHHhhcccchHHHH
Confidence            3577899999999999999999998888888877888888 55555   7889999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhcc------hHH--HHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHH
Q 008137          101 LGADVLFFIGAIIMAIAP------QPW--VIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLA  172 (576)
Q Consensus       101 ~~~~~~~~i~~~~~~~~~------~~~--~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~  172 (576)
                      +++.++..+|+.+-..+.      .++  ....+..+.+.+.-...........-||++++|..|..+-.++..+|..++
T Consensus       113 llgt~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg  192 (480)
T KOG2563|consen  113 LLGTVLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVG  192 (480)
T ss_pred             HHHHHHHHHHHHHhhhccCccccccchhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcchhhhhhhHHHhcchHHHHHH
Confidence            999999999999877764      344  666888899988887777777888999999999999999999999999999


Q ss_pred             HHHHHHhcCCC-----chhHH--HHHHhHHHHHHHHHH-HhhccCChhHHhhcCCHHHHHHHHHHhCCchhhhHHHHHHH
Q 008137          173 YLINLAFTKAP-----GTWRW--MLGVAGLPAVVQFGL-MMMLPESPRWLYRQNKVDEARAILEKIYPADQVEEEVNLLK  244 (576)
Q Consensus       173 ~~l~~~l~~~~-----~~Wr~--~f~v~~~~~~~~~~~-~~~l~esp~~l~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~  244 (576)
                      .++...+....     ..|..  +|+....++.+.+.+ .+..++.|+......+...                      
T Consensus       193 ~llppilV~~~~~~~~~~~~~~~~f~~~~~l~~l~l~l~~~~~~~~P~tPps~s~~~~----------------------  250 (480)
T KOG2563|consen  193 FLLPPILVPSSKDSEDNSWLFFTLFLGVECLAALLLALVLFVFTKKPPTPPSASQAAL----------------------  250 (480)
T ss_pred             hhccceecCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCchhHhhh----------------------
Confidence            99998887654     13544  355445544444443 3334443331111100000                      


Q ss_pred             HHHHhhhhhhcccchhhHHHhhhhcccchhhhhhHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcCCchhHHHHHHHHHhH
Q 008137          245 QSVENEKAEEGLIGKDMISRLKGAFGNKIVRRGLYAGVTVQVAQQFVGINTVMYYSPTIVQFAGFASKSTALALSLVTSG  324 (576)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (576)
                                  .+.++.++.++.++++.+     ...+..+......++...+.+..-+...+. +...+|.......+
T Consensus       251 ------------~~~~f~~si~~~~~n~~F-----~il~~~ygi~~g~F~~l~~~l~~~l~~sgY-~~~~aG~ig~l~iv  312 (480)
T KOG2563|consen  251 ------------QDASFPKSIKSCFKNRQF-----IILAICYGIGLGLFNSLSTLLNLALCPSGY-EGVFAGYIGALMIV  312 (480)
T ss_pred             ------------hcCcHHHHHHHHHcCccH-----HHHHHHHhhhHHHHHHHHHHhhhccccccC-CccccchhHHHHHH
Confidence                        011133566777776643     223333333333444444433323333344 44788888888899


Q ss_pred             HHHHHHHHHHHhhcccCChHH-HHHHHHHHHHHHHHHHHHHHHhhhcCCCccccccccCCCCCCCCcccccCCCCccccc
Q 008137          325 LNALGSIVSMAFVDKYGRRRL-MIVSMFGLSSCLVALAVVFFQAAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCM  403 (576)
Q Consensus       325 ~~~ig~~~~g~l~dk~grr~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  403 (576)
                      .+++++.+.|.+.||.+.-+. +++......++. ++........                                   
T Consensus       313 ~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v~~-~~l~~~t~~~-----------------------------------  356 (480)
T KOG2563|consen  313 AGMLGALASGIIADKTKKFKLTTLVLYLFALVGT-LMLLTCTLFL-----------------------------------  356 (480)
T ss_pred             HHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHH-HHHHHhhccC-----------------------------------
Confidence            999999999999999876444 333333333332 2222111100                                   


Q ss_pred             ccccccccccCCCCCCCCCCcccccccccccccccccccccccCCCCcchhHHHHHHHHHHHHhcCCcccccchhccccc
Q 008137          404 DCLKAKCGFCAHKGNEYLPGACLIDEKSTDTLCSDEHRTYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEIY  483 (576)
Q Consensus       404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~  483 (576)
                                                                     .. .+.+...+.....+..+..|+..-+..|..
T Consensus       357 -----------------------------------------------~~-~viv~~t~~~~g~~~~~~~Pig~ElgvE~T  388 (480)
T KOG2563|consen  357 -----------------------------------------------GD-SVIVFTTCGLLGFFGTGYLPIGFELGVETT  388 (480)
T ss_pred             -----------------------------------------------Cc-eEehhhhHHHHHHhhcCCCCcceeeeeeec
Confidence                                                           00 122333444455566677888888888876


Q ss_pred             cccccccchhHHHHHHHHHHHHHHHHHHHHHHhhc----cchhhHHHHHHHHHHHHHHHhhccCCCCCC
Q 008137          484 PLRYRGVGGGIAAVSNWTSNLIVSLTFLTLTEALG----SAGTFLLFAGFSLLGLVAIYLLVPETKGLA  548 (576)
Q Consensus       484 p~~~rg~~~g~~~~~~~~g~~~~~~~~~~l~~~~g----~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  548 (576)
                      =|..-++..|+.+..+++-+.+-..+.+...+..+    +...-+.....++++.++..++.|+-|+++
T Consensus       389 yPv~E~tSsGll~~~gq~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~lva~~r~~y~R~~  457 (480)
T KOG2563|consen  389 YPVAEGTSSGLLNLSGQIFGVILVFIMGILAEDLGPPGNTFPANIFLTVSALLGAILVAFFRPDYRRLR  457 (480)
T ss_pred             cccCCcccceeEEeehhHHHHHHHHHHHHHhhccCCCCCCccchhHhHHHHHHHHHHHhhhhhhHHhHh
Confidence            56667899999999999999998888888888776    554556666666667777666665544433

>PRK11462 putative transporter; Provisional

Probab=99.77  E-value=8.6e-16  Score=166.41  Aligned_cols=270  Identities=13%  Similarity=0.018  Sum_probs=168.3

Q ss_pred             HHHHhhhhhhhhHHHH-HHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhc----cCchH-HHHHHHHHHHH
Q 008137           36 IGGLLFGYDTGVISGA-LLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDR----FGRKI-SLLGADVLFFI  109 (576)
Q Consensus        36 l~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr----~Grr~-~~~~~~~~~~i  109 (576)
                      ++.+........++.. ...+.+..|++....   |.+..+.-+--++..++.|+++||    +|||| .++++.+..++
T Consensus        16 ~g~~~~~~~~~~~~~~l~~fyt~~~Gl~~~~~---g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i   92 (460)
T PRK11462         16 MGDAASHIIFDNVMLYMMFFYTDIFGIPAGFV---GTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGI   92 (460)
T ss_pred             cchhhhhHHHHHHHHHHHHHHHHhhCCCHHHH---HHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHH
Confidence            3333334444444443 344566778888777   999999999999999999999995    79864 55567677777


Q ss_pred             HHHHHHhcch------HHHHHHHHHHHHhhhhhhhhhHHHHHHhccC-cchhhHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 008137          110 GAIIMAIAPQ------PWVIILGRIFVGLGVGMASMTAPLYISEASP-AKIRGALVSANGFLITGGQFLAYLINLAFTKA  182 (576)
Q Consensus       110 ~~~~~~~~~~------~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~-~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~  182 (576)
                      +.+++-..++      ...+.+.-++..++.......-.++..|..+ ++||++..++...+..+|..+++.+...+...
T Consensus        93 ~~~llf~~p~~s~~~~~~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~  172 (460)
T PRK11462         93 VCVLAYSTPDLSMNGKMIYAAITYTLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNL  172 (460)
T ss_pred             HHHHHHhCCCCCcchHHHHHHHHHHHHHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7766554442      4455666677788888888888889999986 78999999999999999888776665443322


Q ss_pred             C------chhHHHHHHhHHHHHHHHHHH-hhccCChhHHhhcCCHHHHHHHHHHhCCchhhhHHHHHHHHHHHhhhhhhc
Q 008137          183 P------GTWRWMLGVAGLPAVVQFGLM-MMLPESPRWLYRQNKVDEARAILEKIYPADQVEEEVNLLKQSVENEKAEEG  255 (576)
Q Consensus       183 ~------~~Wr~~f~v~~~~~~~~~~~~-~~l~esp~~l~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~  255 (576)
                      .      .+|+....+.++++++..... ...+|.++.  .+++                                    
T Consensus       173 ~g~~~~~~g~~~~~~i~~ii~~i~~~i~~~~~kE~~~~--~~~~------------------------------------  214 (460)
T PRK11462        173 IGGDNKPLGFQGGIAVLSVVAFMMLAFCFFTTKERVEA--PPTT------------------------------------  214 (460)
T ss_pred             hCCCchhhhHHHHHHHHHHHHHHHHHHHHhcceeccCC--CccC------------------------------------
Confidence            1      148887777777766555443 334443210  0000                                    


Q ss_pred             ccchhhHHHhhhhcccchhhhhhHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcCCchhHHHHHHHHHhHHHHHHHHHHHH
Q 008137          256 LIGKDMISRLKGAFGNKIVRRGLYAGVTVQVAQQFVGINTVMYYSPTIVQFAGFASKSTALALSLVTSGLNALGSIVSMA  335 (576)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~  335 (576)
                         ....+..+..++|+.++.....     .+..............+|.+...+ +....+.+.....+.++++.+++++
T Consensus       215 ---~~~~~~l~~~~~Nk~~~~l~~~-----~~~~~~~~~~~~~~~~y~~~y~~g-~~~~~~~~l~~~~i~~iig~~l~~~  285 (460)
T PRK11462        215 ---TSMREDLRDIWQNDQWRIVGLL-----TIFNILAVCVRGGAMMYYVTWILG-TPEVFVAFLTTYCVGNLIGSALAKP  285 (460)
T ss_pred             ---CCHHHHHHHHhCChHHHHHHHH-----HHHHHHHHHHHHhHhhhhhhhhcC-ChHHHHHHHHHHHHHHHHHHHHHHH
Confidence               0011344555666655432111     111112222222222333333333 3333444556667778899999999


Q ss_pred             hhcccCChHHHHHHHHHHHH
Q 008137          336 FVDKYGRRRLMIVSMFGLSS  355 (576)
Q Consensus       336 l~dk~grr~~~~~~~~~~~~  355 (576)
                      ++||+++|+.+..+..+..+
T Consensus       286 l~~r~gkk~~~~~~~~~~~~  305 (460)
T PRK11462        286 LTDWKCKVTIFWWTNALLAV  305 (460)
T ss_pred             HHHHhChHHHHHHHHHHHHH
Confidence            99999999887655444333

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.76  E-value=2e-16  Score=173.28  Aligned_cols=308  Identities=17%  Similarity=0.187  Sum_probs=226.8

Q ss_pred             HHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHH
Q 008137           29 KLALSAGIGGLLFGYDTGVISGALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFF  108 (576)
Q Consensus        29 ~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~  108 (576)
                      ..+.++++..+.+++....+...+..+-+.|+++.++.   |++.+.+-++..+...+..+...|.-|-+.+-+|.++++
T Consensus        97 ~fl~~l~~~~~~q~l~~~y~~s~IttiErRF~i~Ss~s---G~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~  173 (735)
T KOG3626|consen   97 MFLVLLSLAAFAQGLYVGYFNSVITTIERRFKISSSQS---GLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMG  173 (735)
T ss_pred             hHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCCcc---eeEeeecccchhhhhHhHHHhccccCccceeeechhHHH
Confidence            34556677778888888889999999999999999998   999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhc--------------------c---------------------------h----HH-HHHHHHHHHHhhhhh
Q 008137          109 IGAIIMAIA--------------------P---------------------------Q----PW-VIILGRIFVGLGVGM  136 (576)
Q Consensus       109 i~~~~~~~~--------------------~---------------------------~----~~-~l~~~R~l~G~~~g~  136 (576)
                      ++++++++-                    +                           .    ++ .++++.++.|+|...
T Consensus       174 lgsll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tp  253 (735)
T KOG3626|consen  174 LGSLLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATP  253 (735)
T ss_pred             HHHHHHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCC
Confidence            999998872                    0                           0    23 567889999999999


Q ss_pred             hhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCC------------------chhHHHHHHhHHHHH
Q 008137          137 ASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFTKAP------------------GTWRWMLGVAGLPAV  198 (576)
Q Consensus       137 ~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~~------------------~~Wr~~f~v~~~~~~  198 (576)
                      .++...+|+-|....++-+.++|+..+...+|.++|.++++++...+                  |.|..-|++.+.+.+
T Consensus       254 i~tlGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~  333 (735)
T KOG3626|consen  254 IFTLGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLL  333 (735)
T ss_pred             CccCCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999876432                  247777888899888


Q ss_pred             HHHHHHhhccCChhHHhhcCCHHHHHHHHHHhCCchhhhHHHHHHHHHHHhhhhhhcccchhhHHHhhhhcccchhhhhh
Q 008137          199 VQFGLMMMLPESPRWLYRQNKVDEARAILEKIYPADQVEEEVNLLKQSVENEKAEEGLIGKDMISRLKGAFGNKIVRRGL  278 (576)
Q Consensus       199 ~~~~~~~~l~esp~~l~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (576)
                      +..+.++++|++.+...++   ..+++    .+...+...        ..++........+++....+.+++|+.     
T Consensus       334 ~~a~p~f~fPk~lp~~~~~---~~~~~----~~~~k~~~~--------~~~~~~~~~~~ikdfp~s~~~ll~N~i-----  393 (735)
T KOG3626|consen  334 FSAVPLFFFPKELPKSQKR---KRARD----LHVLKTESG--------GAKSDKTFGKKIKDFPKSIKRLLSNPI-----  393 (735)
T ss_pred             HHHHHHHhCcccCcccccc---chhhh----hcccccccc--------cccCCcchhhhHHHHHHHHHHHhcCch-----
Confidence            8888899998764321110   01000    000000000        000000111122344566777777764     


Q ss_pred             HHHHHHHHHHHHHhhHHHHhhhHHHHHhhcCCchhHHHHHHH-HHhHHHHHHHHHHHHhhcccC--ChHHHHHHHHHHHH
Q 008137          279 YAGVTVQVAQQFVGINTVMYYSPTIVQFAGFASKSTALALSL-VTSGLNALGSIVSMAFVDKYG--RRRLMIVSMFGLSS  355 (576)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ig~~~~g~l~dk~g--rr~~~~~~~~~~~~  355 (576)
                      +...++...+....+..+..|+|.|++.....+...+..+.. +...+..+|.+++|+++.|+.  .|....+.++...+
T Consensus       394 f~~~~l~~~~~~~~~~G~~tFlPKyLE~Qfg~sas~An~l~G~i~vp~~~~Gi~lGG~iikkfkl~~r~~a~~~~~~~~l  473 (735)
T KOG3626|consen  394 FMLVVLASVIESLAITGYITFLPKYLETQFGISASLANILTGSIGVPAAAVGIFLGGLIIKKFKLSARGAAKFVIVCSVL  473 (735)
T ss_pred             HHHHHHHHHHHHHHHhhHHHhhHHHHHHHcCCCHHHHHHHhhhhhhhhhhhhhhccceeeeeecccHHHHHHHHHHHHHH
Confidence            455555666666678888899999999877767777776664 444455788999999999874  45555555555555


Q ss_pred             HHHH
Q 008137          356 CLVA  359 (576)
Q Consensus       356 ~~~~  359 (576)
                      +++.
T Consensus       474 ~l~~  477 (735)
T KOG3626|consen  474 SLLF  477 (735)
T ss_pred             HHHH
Confidence            5444

>TIGR01272 gluP glucose/galactose transporter

Probab=99.74  E-value=6.1e-16  Score=158.77  Aligned_cols=276  Identities=14%  Similarity=0.078  Sum_probs=186.7

Q ss_pred             hcchHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCC------------
Q 008137          116 IAPQPWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFTKAP------------  183 (576)
Q Consensus       116 ~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~~------------  183 (576)
                      ...+++.++++-++.|.|.+...+.+..++++..+++++++.+++.+...++|.+++|++++.+....            
T Consensus         6 ~~~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~~   85 (310)
T TIGR01272         6 SQRYYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATAN   85 (310)
T ss_pred             HhhHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhhh
Confidence            45789999999999999999999999999999999999999999999999999999999999876321            


Q ss_pred             ---chhHHHHHHhHHHHHHHHHHHhh--ccCChhHHhhcCCHHHHHHHHHHhCCchhhhHHHHHHHHHHHhhhhhhcccc
Q 008137          184 ---GTWRWMLGVAGLPAVVQFGLMMM--LPESPRWLYRQNKVDEARAILEKIYPADQVEEEVNLLKQSVENEKAEEGLIG  258 (576)
Q Consensus       184 ---~~Wr~~f~v~~~~~~~~~~~~~~--l~esp~~l~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (576)
                         .+||++|++.+.+.++..+.+.+  +||..+     ++.++..                           +.+.   
T Consensus        86 ~~~~~~~~~yl~ia~~~~~~~i~~~~~~~p~~~~-----~~~~~~~---------------------------~~~~---  130 (310)
T TIGR01272        86 AEAAKVHTPYLLLAGALAVLAIIFAFLPLPELQE-----ADVARVS---------------------------SGDT---  130 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCc-----ccccccc---------------------------cccc---
Confidence               25999999776665555444433  354321     0000000                           0000   


Q ss_pred             hhhHHHhhhhcccchhhhhhHHHHHHHHHHHHHhhHHHHhhhHHHHHhh--cCCchhHHHHHHHHHhHHHHHHHHHHHHh
Q 008137          259 KDMISRLKGAFGNKIVRRGLYAGVTVQVAQQFVGINTVMYYSPTIVQFA--GFASKSTALALSLVTSGLNALGSIVSMAF  336 (576)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ig~~~~g~l  336 (576)
                          .+.++.++++     .++...+..++..........|.+.|+.+.  .+.+...++........+.++|+++++++
T Consensus       131 ----~~~~~~~~~~-----~~~l~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l  201 (310)
T TIGR01272       131 ----TQKTSAFQFT-----HLVLGALGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAV  201 (310)
T ss_pred             ----cchhhHHhhH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                0001112221     222233444444445667778889998753  24477788888888899999999999999


Q ss_pred             hcccCChHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccccccCCCCCCCCcccccCCCCcccccccccccccccCCC
Q 008137          337 VDKYGRRRLMIVSMFGLSSCLVALAVVFFQAAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAHK  416 (576)
Q Consensus       337 ~dk~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  416 (576)
                      .||+++|+.+..+.++..++.+++....                                                    
T Consensus       202 ~~r~g~~~~l~~~~~l~~~~~~l~~~~~----------------------------------------------------  229 (310)
T TIGR01272       202 MPMISQGRYLAFNAFLAVLLSIGAALTH----------------------------------------------------  229 (310)
T ss_pred             HHHhCHHHHHHHHHHHHHHHHHHHHHcC----------------------------------------------------
Confidence            9999999988777666665543332210                                                    


Q ss_pred             CCCCCCCcccccccccccccccccccccccCCCCcchhHHHHHHHHHHHHhcCCcccccchhccccccccccccchhHHH
Q 008137          417 GNEYLPGACLIDEKSTDTLCSDEHRTYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEIYPLRYRGVGGGIAA  496 (576)
Q Consensus       417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~~~g~~~  496 (576)
                                                          ++.....+.+.+++.+ ...|...+...+.+|++ .+++.++. 
T Consensus       230 ------------------------------------~~~~~~~~~l~g~~~s-~i~P~~~s~a~~~~~~~-~~~asai~-  270 (310)
T TIGR01272       230 ------------------------------------GYVAMWFVLALGLFNS-IMFPTIFSLALNALGRH-TSQGSGIL-  270 (310)
T ss_pred             ------------------------------------CHHHHHHHHHHHHHHH-HHHHHHHHHHHhhhhhh-hhhhHHHH-
Confidence                                                0111222233333333 34455556666766643 56777775 


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhccchhhHHH
Q 008137          497 VSNWTSNLIVSLTFLTLTEALGSAGTFLLF  526 (576)
Q Consensus       497 ~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~  526 (576)
                      ..+.+|+++.|.+.|.+.|..|.+.++++.
T Consensus       271 ~~~~~Gg~i~P~l~G~lad~~g~~~a~~v~  300 (310)
T TIGR01272       271 CLAIVGGAIVPLLQGSLADCLGIQLAFALP  300 (310)
T ss_pred             HHHHhcchHHHHHHHHHHHhccchHHHHHH
Confidence            567899999999999999998887776633

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=99.73  E-value=1.6e-14  Score=152.35  Aligned_cols=355  Identities=17%  Similarity=0.155  Sum_probs=241.2

Q ss_pred             HHHHhhhhhhhhHHHHHHH-HHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhc----cCc-hHHHHHHHHHHHH
Q 008137           36 IGGLLFGYDTGVISGALLY-IKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDR----FGR-KISLLGADVLFFI  109 (576)
Q Consensus        36 l~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr----~Gr-r~~~~~~~~~~~i  109 (576)
                      ++-+............+.. +.+.+|++....   |.+..+.-+--++.-++.|.+.||    +|| |+-++.+.+-+++
T Consensus        19 ~gd~~~~~~~~~~~~yLl~fYTdv~Gis~~~a---G~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i   95 (467)
T COG2211          19 LGDFASNFAFGIVVLYLLFFYTDVFGLSAALA---GTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAI   95 (467)
T ss_pred             chhhHHHHHHHHHHHHHHHHHhcccCCcHHHH---HHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHH
Confidence            4444444454555554544 456678888777   888888888889999999999994    787 5667778788888


Q ss_pred             HHHHHHhcch------HHHHHHHHHHHHhhhhhhhhhHHHHHHhccC-cchhhHHHHHHHHHHHHHHHHHHHHHHHhcC-
Q 008137          110 GAIIMAIAPQ------PWVIILGRIFVGLGVGMASMTAPLYISEASP-AKIRGALVSANGFLITGGQFLAYLINLAFTK-  181 (576)
Q Consensus       110 ~~~~~~~~~~------~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~-~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~-  181 (576)
                      .+.++-.+++      ....++.-.+.+++.......-.++..|..+ ++||.+..++-+.+.++|.++...+...+.. 
T Consensus        96 ~~~l~F~~p~~~~~~k~~ya~vtY~l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~  175 (467)
T COG2211          96 VAVLLFITPDFSMTGKLIYALVTYMLLGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVKL  175 (467)
T ss_pred             HHHHHHcCCCcccCcchHHHHHHHHHHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8888877763      4455667788888888888878888888874 7899999999999999997765555444332 


Q ss_pred             ---C--CchhHHHHHHhHHHHHHHHHH-HhhccCChhHHhhcCCHHHHHHHHHHhCCchhhhHHHHHHHHHHHhhhhhhc
Q 008137          182 ---A--PGTWRWMLGVAGLPAVVQFGL-MMMLPESPRWLYRQNKVDEARAILEKIYPADQVEEEVNLLKQSVENEKAEEG  255 (576)
Q Consensus       182 ---~--~~~Wr~~f~v~~~~~~~~~~~-~~~l~esp~~l~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~  255 (576)
                         .  ..+|+..-++.++++++..+. ++-.+|.+... .+.+ +                                  
T Consensus       176 ~g~~~~~~g~~~~~~~~~vi~~i~~l~~~~~v~ER~~~~-~~~~-~----------------------------------  219 (467)
T COG2211         176 FGGGDKALGYQGTALVLGVIGVILLLFCFFNVKERVVET-QPTK-T----------------------------------  219 (467)
T ss_pred             hCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcccCcc-ccCc-c----------------------------------
Confidence               2  125888888888777776655 34455553200 0000 0                                  


Q ss_pred             ccchhhHHHhhhhcccchhhhhhHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcCCchhHHHHHHHHHhHHHHHHHHHHHH
Q 008137          256 LIGKDMISRLKGAFGNKIVRRGLYAGVTVQVAQQFVGINTVMYYSPTIVQFAGFASKSTALALSLVTSGLNALGSIVSMA  335 (576)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~  335 (576)
                      ....+........++|+.++....     ...+.+.+.+.......+|.+.....+.............+.+++.++...
T Consensus       220 ~~~~~~~~~~~~~~~Nrp~~~~l~-----~~l~~~~~~~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~  294 (467)
T COG2211         220 GVKLKLKDSFLLIFKNRPLLLLLL-----MNLLLFIAFNIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPR  294 (467)
T ss_pred             cccccHHHHHHHHHccchHHHHHH-----HHHHHHHHHHHHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHH
Confidence            000111133445666766655333     223333334445555556666555556666666667777777777999999


Q ss_pred             hhcccCChHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccccccCCCCCCCCcccccCCCCcccccccccccccccCC
Q 008137          336 FVDKYGRRRLMIVSMFGLSSCLVALAVVFFQAAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAH  415 (576)
Q Consensus       336 l~dk~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  415 (576)
                      +++|+|+|++...+.++.+++.+++.+...                                                  
T Consensus       295 L~~~~gkk~~~~~~~~~~~i~~~~~~f~~~--------------------------------------------------  324 (467)
T COG2211         295 LVKKFGKKKLFLIGLLLLAVGYLLLYFTPA--------------------------------------------------  324 (467)
T ss_pred             HHHHhchHHHHHHHHHHHHHHHHHHHhhcC--------------------------------------------------
Confidence            999999999999998888888887766631                                                  


Q ss_pred             CCCCCCCCcccccccccccccccccccccccCCCCcchhHHHHHHHHHHHHhcCCcccccchhcccccc-------cccc
Q 008137          416 KGNEYLPGACLIDEKSTDTLCSDEHRTYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEIYP-------LRYR  488 (576)
Q Consensus       416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p-------~~~r  488 (576)
                                                         +..++.++..++...+.+ ...+++|++.+|...       .+..
T Consensus       325 -----------------------------------~~~~l~~~~~~i~~~g~~-~~~~l~wam~~d~vDyge~~TG~R~e  368 (467)
T COG2211         325 -----------------------------------GSVVLIVVALIIAGVGTG-IANPLPWAMVADTVDYGEWKTGVRRE  368 (467)
T ss_pred             -----------------------------------cchHHHHHHHHHHHHHhh-ccccccHHHhcchhhHHHHHhCCCch
Confidence                                               112333444444444444 345688899888753       3455


Q ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 008137          489 GVGGGIAAVSNWTSNLIVSLTFLTLTEALGSA  520 (576)
Q Consensus       489 g~~~g~~~~~~~~g~~~~~~~~~~l~~~~g~~  520 (576)
                      |...|...++..+|.+++..+.|++.+..|+.
T Consensus       369 Gi~~s~~tF~~K~g~ala~~~~g~~L~~~Gyv  400 (467)
T COG2211         369 GIVYSGMTFFRKLGLALAGFIPGWILGAIGYV  400 (467)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            88899999999999999999999998877654

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=99.67  E-value=4e-14  Score=148.19  Aligned_cols=169  Identities=18%  Similarity=0.276  Sum_probs=134.9

Q ss_pred             HHHHhhhhhhhhHHH-HHHHHHHhhc----cchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhcc-CchHHHHHHHHHHHH
Q 008137           36 IGGLLFGYDTGVISG-ALLYIKEDFR----DVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRF-GRKISLLGADVLFFI  109 (576)
Q Consensus        36 l~~~~~~~~~~~~~~-~~~~i~~~~~----~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~-Grr~~~~~~~~~~~i  109 (576)
                      ..-+-.-++.+.... +.-++..+++    .++++.   .-+.+.|..-.-...+++||++||+ |+|+++++|.+++.+
T Consensus        28 ~vE~WERFsyYGmraiL~~Yl~~~~~~gLg~~~~~A---~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGail~~i  104 (498)
T COG3104          28 FVELWERFSYYGMRAILILYLYYQLGDGLGFDETHA---TGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILMAI  104 (498)
T ss_pred             HHHHHHHHhhhhhHHHHHHHHHHhccccCCcChHhh---HHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence            333444444333333 3344555666    777777   5566666666666789999999996 999999999999999


Q ss_pred             HHHHHHhcc--hHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcch--hhHHHHHHHHHHHHHHHHHHHHHHHhcCCCch
Q 008137          110 GAIIMAIAP--QPWVIILGRIFVGLGVGMASMTAPLYISEASPAKI--RGALVSANGFLITGGQFLAYLINLAFTKAPGT  185 (576)
Q Consensus       110 ~~~~~~~~~--~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~--R~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~  185 (576)
                      |.++.+.+.  ++..+.++-.+.++|.|..=+...++++|.+|+++  |-..++++.++.++|.+++|++.+++.+..+ 
T Consensus       105 Gh~~L~~~~~~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g-  183 (498)
T COG3104         105 GHLVLAISSVSGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLAINYG-  183 (498)
T ss_pred             HHHHHhccccccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHHHhhC-
Confidence            999999984  78899999999999999999999999999997643  6778899999999999999999999999988 


Q ss_pred             hHHHHHHhHHHHHHHHHHHhhcc
Q 008137          186 WRWMLGVAGLPAVVQFGLMMMLP  208 (576)
Q Consensus       186 Wr~~f~v~~~~~~~~~~~~~~l~  208 (576)
                      |+..|.+.++-..+.++.++..+
T Consensus       184 ~~~gF~~aavGm~~gl~~f~~~~  206 (498)
T COG3104         184 WHVGFGLAAVGMIIGLVIFLLGR  206 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcc
Confidence            99999998887766666655443

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=99.66  E-value=6.9e-18  Score=184.47  Aligned_cols=312  Identities=17%  Similarity=0.160  Sum_probs=3.0

Q ss_pred             HHHHHHHHHhhhhhhhhHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHH
Q 008137           31 ALSAGIGGLLFGYDTGVISGALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFIG  110 (576)
Q Consensus        31 ~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~  110 (576)
                      ++.+++..+++......+...+..+.+.|+++..+.   |++.+.+-++..+..++..++.+|..|-+.+-+|.++++++
T Consensus         5 l~~~~~~~~~q~~~~g~~~~~lttiErRF~l~S~~~---G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g   81 (539)
T PF03137_consen    5 LVFLCLLGLFQMMVSGYVNSSLTTIERRFGLSSSQS---GLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLG   81 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHH---HHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHH
Confidence            445566666777788888888999999999999999   99999999999999999999999988888999999999999


Q ss_pred             HHHHHhcc--------------------------------------------------hHHHHHHHHHHHHhhhhhhhhh
Q 008137          111 AIIMAIAP--------------------------------------------------QPWVIILGRIFVGLGVGMASMT  140 (576)
Q Consensus       111 ~~~~~~~~--------------------------------------------------~~~~l~~~R~l~G~~~g~~~~~  140 (576)
                      ++++++=+                                                  -+..++++.++.|+|....++.
T Consensus        82 ~~l~~lPhf~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tL  161 (539)
T PF03137_consen   82 SLLFALPHFLSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTL  161 (539)
T ss_dssp             ----------------------------------------------------------------------SSS-------
T ss_pred             HHHHhccHhhcCCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccc
Confidence            99887610                                                  0466889999999999999999


Q ss_pred             HHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCC---------------------chhHHHHHHhHHHHHH
Q 008137          141 APLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFTKAP---------------------GTWRWMLGVAGLPAVV  199 (576)
Q Consensus       141 ~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~~---------------------~~Wr~~f~v~~~~~~~  199 (576)
                      ..+|+-|..++++-+.++|++.+...+|..+|+++++.+...+                     |.|-.-|++.+++.++
T Consensus       162 G~tYiDDnv~~~~splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l  241 (539)
T PF03137_consen  162 GITYIDDNVSKKNSPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFL  241 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             eeeeeccccccccCccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999876432                     1255556677777777


Q ss_pred             HHHHHhhccCChhHHhhcCCHHHHHHHHHHhCCchhhhHHHHHHHHHHHhhhhhhcccchhhHHHhhhhcccchhhhhhH
Q 008137          200 QFGLMMMLPESPRWLYRQNKVDEARAILEKIYPADQVEEEVNLLKQSVENEKAEEGLIGKDMISRLKGAFGNKIVRRGLY  279 (576)
Q Consensus       200 ~~~~~~~l~esp~~l~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (576)
                      ..+.++.+|++-+...+..+.++.++  ++...     ...+  .....+.........+++.+..+.+++|+.     +
T Consensus       242 ~aipl~~FPk~lp~~~~~~~~~~~~~--~~~~~-----~~~~--~~~~~~~~~~~~~~~~df~~~l~~Ll~Np~-----f  307 (539)
T PF03137_consen  242 SAIPLFFFPKKLPGTSERQEEKESSE--RKEED-----SDKD--SFKDPKSKKSFGKSIKDFPKALKRLLTNPV-----F  307 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHcCCccCCCcccccchhhhhh--cchhh-----hhhh--cccccccccchhhhhhhHHHHHHHHhcChH-----H
Confidence            77777778765332210000000000  00000     0000  000000000011223444566667776664     4


Q ss_pred             HHHHHHHHHHHHhhHHHHhhhHHHHHhhcCCchhHHHHHHH-HHhHHHHHHHHHHHHhhcccC--ChHHHHHHHHHHHHH
Q 008137          280 AGVTVQVAQQFVGINTVMYYSPTIVQFAGFASKSTALALSL-VTSGLNALGSIVSMAFVDKYG--RRRLMIVSMFGLSSC  356 (576)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ig~~~~g~l~dk~g--rr~~~~~~~~~~~~~  356 (576)
                      ....+...........+..+.|.|++.....+...+.++.. +...++++|.+++|++.+|++  .|..+.+..+...++
T Consensus       308 ~~~~la~~~~~~~~~G~~tF~pKylE~QF~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~kl~~~~~~~~~~v~~~v~  387 (539)
T PF03137_consen  308 MCLILAGVFESFIVSGFATFLPKYLESQFGLSASQASLLTGIVSIPGAALGILLGGYIVKKFKLSARGAAKFCIVVSIVS  387 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhhhhcchhheehheEEEEEEEecCcHHHHHHHHHHHHHHH
Confidence            44555555566667888889999999876667666666554 334466789999999999874  445554444444444


Q ss_pred             HHH
Q 008137          357 LVA  359 (576)
Q Consensus       357 ~~~  359 (576)
                      .++
T Consensus       388 ~~~  390 (539)
T PF03137_consen  388 VIL  390 (539)
T ss_dssp             ---
T ss_pred             HHH
Confidence            443

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.66  E-value=7.4e-15  Score=160.59  Aligned_cols=187  Identities=16%  Similarity=0.128  Sum_probs=143.2

Q ss_pred             hhhhhHHHHHHHHH-HhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHH---HHhcc
Q 008137           43 YDTGVISGALLYIK-EDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFIGAII---MAIAP  118 (576)
Q Consensus        43 ~~~~~~~~~~~~i~-~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~---~~~~~  118 (576)
                      .....+...+|.+. ++++.+..+.   ++..+...++..++.++.|+++||+|||+.+.++.++..++.+.   ...++
T Consensus       264 ~~~~~~~~~~p~~l~~~~g~s~~~~---~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~  340 (490)
T PRK10642        264 VTYYMLLTYMPSYLSHNLHYSEDHG---VLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILINSN  340 (490)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            33444455667655 5678776665   77888889999999999999999999999988887654433322   22345


Q ss_pred             hHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHhHHHHH
Q 008137          119 QPWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFTKAPGTWRWMLGVAGLPAV  198 (576)
Q Consensus       119 ~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~Wr~~f~v~~~~~~  198 (576)
                      +...++++|++.|++.+........++.|.+|++.|+.++++......++..++|.+.+++.+..++|+.++++..++++
T Consensus       341 ~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~  420 (490)
T PRK10642        341 VIGLIFAGLLMLAVILNCFTGVMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAV  420 (490)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence            67788889999999888777888888999999999999999744444555677888888877655458888877777777


Q ss_pred             HHHHHHhhccCChhHHhhc-----CCHHHHHHHHHHhCC
Q 008137          199 VQFGLMMMLPESPRWLYRQ-----NKVDEARAILEKIYP  232 (576)
Q Consensus       199 ~~~~~~~~l~esp~~l~~~-----~~~~~~~~~l~~i~~  232 (576)
                      +.++..+++||+|+++.++     ++.+++++.+.+++.
T Consensus       421 i~~~~~~~~pes~~~~~~~~~~~~~~~~~a~~~l~~~~~  459 (490)
T PRK10642        421 IGLITGVTMKETANRPLKGATPAASDIQEAKEILVEHYD  459 (490)
T ss_pred             HHHHHHHHhccccCCCCCCccccccchhhHHHHhhcccc
Confidence            7777777789999987654     888899998888763

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=99.64  E-value=2.4e-13  Score=139.45  Aligned_cols=352  Identities=16%  Similarity=0.098  Sum_probs=227.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhccCchH-HHHHHHHHHHHHHHHHHhcch--H-HHHHHHHHHHHhhhhhhhhhHHH
Q 008137           68 LQELIVSMAVAGAIFGAGFGGWINDRFGRKI-SLLGADVLFFIGAIIMAIAPQ--P-WVIILGRIFVGLGVGMASMTAPL  143 (576)
Q Consensus        68 ~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~-~~~~~~~~~~i~~~~~~~~~~--~-~~l~~~R~l~G~~~g~~~~~~~~  143 (576)
                      +.+...++..+..++-+++.|.++|..|+|| .+.....+..+++.+..++++  + +..+++-.+..++.....+.-.+
T Consensus        59 ~~gy~~aia~llia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i~~~s~~~~~l~~~il~~i~~~~s~Vfyds  138 (438)
T COG2270          59 YWGYASAIAGLLIALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWFIPPGSYLLLLLLFLILASIGFEFSNVFYDS  138 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhcchhheehhh
Confidence            4499999999999999999999999999765 455555566666677777655  4 44456678888888888888999


Q ss_pred             HHHhccCcchhhHHHHHHHHHHHHHHHHHHHHH--HHhcC---------------CCchhHHHHHHhHHHHHHHHHHH-h
Q 008137          144 YISEASPAKIRGALVSANGFLITGGQFLAYLIN--LAFTK---------------APGTWRWMLGVAGLPAVVQFGLM-M  205 (576)
Q Consensus       144 ~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~--~~l~~---------------~~~~Wr~~f~v~~~~~~~~~~~~-~  205 (576)
                      ++.+..++++-++..+.-.....+|..+.-++.  .....               ..-+=|..+.+.++--++..+.+ +
T Consensus       139 ~L~~~~~k~~~~riS~lg~~~gylgs~i~li~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ri~~~l~A~W~li~~iPm~~  218 (438)
T COG2270         139 MLPRLTTKDNMGRISGLGWALGYLGSVILLIFVVLGFALGQQTGITIILLGLPPADGEDVRITGLLAALWWLLFALPMIL  218 (438)
T ss_pred             HhhhhcCccccCcccccccccccccchHHHHHHHHHHhcccccceeEEeeccCccccccchhHHHHHHHHHHHHHhHHHh
Confidence            999999887777776655555555554433332  11111               11136777877777666665554 4


Q ss_pred             hccCChhHHhhcCCHHHHHHHHHHhCCchhhhHHHHHHHHHHHhhhhhhcccchhhHHHhhhhcccchhhhhhHHHHHHH
Q 008137          206 MLPESPRWLYRQNKVDEARAILEKIYPADQVEEEVNLLKQSVENEKAEEGLIGKDMISRLKGAFGNKIVRRGLYAGVTVQ  285 (576)
Q Consensus       206 ~l~esp~~l~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  285 (576)
                      ..++.++-   .....+.  .          ..                  ..++++.+.++..+++..     ..+.+.
T Consensus       219 ~v~~~~~~---~~~~~~~--l----------~~------------------g~k~L~~t~k~i~~~~~i-----~~FLiA  260 (438)
T COG2270         219 NVHDAEKI---SSPPPTA--L----------RN------------------GFKELKSTFKEIRGRKNL-----VLFLIA  260 (438)
T ss_pred             cccccccc---cccchHH--H----------HH------------------HHHHHHHHHHHHhcccch-----HHHHHH
Confidence            44544320   0000000  0          00                  011122444555444422     223333


Q ss_pred             HHHHHHhhHHHHhhhHHHHHhhcCCchhHHHHHHHHHhHHHHHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHHHHHHH
Q 008137          286 VAQQFVGINTVMYYSPTIVQFAGFASKSTALALSLVTSGLNALGSIVSMAFVDKYGRRRLMIVSMFGLSSCLVALAVVFF  365 (576)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dk~grr~~~~~~~~~~~~~~~~~~~~~~  365 (576)
                      .++..-+.++.......|-....+.+..+..++.....+.+++|+++.|++.||+|.|+++..+.++..+..+.......
T Consensus       261 ~~~~~DGv~til~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~~~  340 (438)
T COG2270         261 RFFYIDGVNTILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLIFLEG  340 (438)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHHHccc
Confidence            33344455666666777777444447778888888899999999999999999999998888777666655554333311


Q ss_pred             HhhhcCCCccccccccCCCCCCCCcccccCCCCcccccccccccccccCCCCCCCCCCcccccccccccccccccccccc
Q 008137          366 QAAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAHKGNEYLPGACLIDEKSTDTLCSDEHRTYFI  445 (576)
Q Consensus       366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  445 (576)
                                                                                                      
T Consensus       341 --------------------------------------------------------------------------------  340 (438)
T COG2270         341 --------------------------------------------------------------------------------  340 (438)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cCCCCcchhHHHHHHHHHHHHhcCCcccccchhccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHhhcc-chhhH
Q 008137          446 SGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEIYPLRYRGVGGGIAAVSNWTSNLIVSLTFLTLTEALGS-AGTFL  524 (576)
Q Consensus       446 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~g~~~~~~~~~~l~~~~g~-~~~~~  524 (576)
                              ......+.++...+..+.....-++..++.|++.-++.+|+++..++...+++|.+++.+.+..|. +..+.
T Consensus       341 --------~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g~~  412 (438)
T COG2270         341 --------ELDFWILGLLVGTSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGSSRAGVL  412 (438)
T ss_pred             --------cHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcchhhHHH
Confidence                    011222223333333345556678899999999999999999999999999999999999998775 34455


Q ss_pred             HHHHHHHHHHHHHHhhccCCCC
Q 008137          525 LFAGFSLLGLVAIYLLVPETKG  546 (576)
Q Consensus       525 ~~~~~~~i~~~~~~~~~~~~~~  546 (576)
                      ...++.+++++.. +..|+.++
T Consensus       413 ~i~vll~iGl~~L-~~v~~~~~  433 (438)
T COG2270         413 SIIVLLLIGLLLL-LRVKVPGR  433 (438)
T ss_pred             HHHHHHHhhHhhE-EeecCCCC
Confidence            5555555565553 44554433

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=99.55  E-value=6e-14  Score=124.70  Aligned_cols=136  Identities=25%  Similarity=0.412  Sum_probs=122.3

Q ss_pred             HHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcc
Q 008137           73 VSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFIGAIIMAIAPQPWVIILGRIFVGLGVGMASMTAPLYISEASPAK  152 (576)
Q Consensus        73 ~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~  152 (576)
                      .+.+.++..+++++.|++.||+|||+.+..+..+..++.++..+.++++.+.+.+++.|++.+...+....++.|.+|++
T Consensus         4 ~~~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~   83 (141)
T TIGR00880         4 LAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIADIYPPE   83 (141)
T ss_pred             EEeehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChh
Confidence            44567888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHhHHHHHHHHHHHh-hccC
Q 008137          153 IRGALVSANGFLITGGQFLAYLINLAFTKAPGTWRWMLGVAGLPAVVQFGLMM-MLPE  209 (576)
Q Consensus       153 ~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~Wr~~f~v~~~~~~~~~~~~~-~l~e  209 (576)
                      +|+++.++.+....+|..+++.+.+.+.+..+ |++.|++.++..++..+..+ ..||
T Consensus        84 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  140 (141)
T TIGR00880        84 ERGVALGLMSAGIALGPLLGPPLGGVLAQFLG-WRAPFLFLAILALAAFILLAFLLPE  140 (141)
T ss_pred             hhhHHHHHHHHhHHHHHHHhHHhHHHHhcccc-hHHHHHHHHHHHHHHHHHHhhcCCC
Confidence            99999999999999999999999999988776 99999998887777665543 3444

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=99.53  E-value=6.4e-11  Score=122.08  Aligned_cols=333  Identities=12%  Similarity=0.030  Sum_probs=211.6

Q ss_pred             HHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccC-----chHHH-HHHHHHHHHHHHHHHhc-----c-----
Q 008137           55 IKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFG-----RKISL-LGADVLFFIGAIIMAIA-----P-----  118 (576)
Q Consensus        55 i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~G-----rr~~~-~~~~~~~~i~~~~~~~~-----~-----  118 (576)
                      +..|++.+..-.   +.+.++..+.... .+.+|+.+|+.+     ||..+ ..|.++...+..+..++     .     
T Consensus         6 MIvEL~vpA~lv---~~lval~~~~ap~-R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~   81 (403)
T PF03209_consen    6 MIVELGVPAWLV---ALLVALHYLVAPL-RVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQS   81 (403)
T ss_pred             HHHHhccHHHHH---HHHHHHHHHHHHH-HHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHccccccc
Confidence            456777765555   8888888887765 899999999999     87544 45666666655554442     2     


Q ss_pred             ---h-HH--HHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHH
Q 008137          119 ---Q-PW--VIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFTKAPGTWRWMLGV  192 (576)
Q Consensus       119 ---~-~~--~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~Wr~~f~v  192 (576)
                         . .+  ...+.-.+.|+|.+.......++++|..|+++|+++.++...+.-+|.+++..+.+.+.+.+..-|..-.+
T Consensus        82 ~~~~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~~rL~~v~  161 (403)
T PF03209_consen   82 SGPFWLGLALAALAFLLYGLGVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSPERLIQVI  161 (403)
T ss_pred             ccccHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHH
Confidence               1 22  33456688999999999999999999999999999999999999999999999999888876645544444


Q ss_pred             hHHH--HHHHHHHHhhccCChhHHhhcCCHHHHHHHHHHhCCchhhhHHHHHHHHHHHhhhhhhcccchhhHHHhhhhcc
Q 008137          193 AGLP--AVVQFGLMMMLPESPRWLYRQNKVDEARAILEKIYPADQVEEEVNLLKQSVENEKAEEGLIGKDMISRLKGAFG  270 (576)
Q Consensus       193 ~~~~--~~~~~~~~~~l~esp~~l~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (576)
                      .+..  .++..++-.+=.|.+.. ....                                  ..+.........+++...
T Consensus       162 ~~~a~i~~~l~~ia~wg~E~r~~-~~~~----------------------------------~~~~~~~~f~~a~~~~~~  206 (403)
T PF03209_consen  162 QGVALIALLLNLIALWGQEPRRS-RRAA----------------------------------AAERPRPPFREAWRQVWA  206 (403)
T ss_pred             HHHHHHHHHHHHHHHHhcccCCc-cccc----------------------------------CCCCCCccHHHHHHHHHh
Confidence            3332  22222222222232110 0000                                  000011112244455555


Q ss_pred             cchhhhhhHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcCCchhHHHHHHHHHhHHHHHHHHHHHHhhc-ccCChHHHHHH
Q 008137          271 NKIVRRGLYAGVTVQVAQQFVGINTVMYYSPTIVQFAGFASKSTALALSLVTSGLNALGSIVSMAFVD-KYGRRRLMIVS  349 (576)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~d-k~grr~~~~~~  349 (576)
                      ++.-++- +..+.+    ....++.--..+-.|--++.+.+..++..++.....+.++|..+.|++.. |.++++...++
T Consensus       207 ~~~a~~f-~~fl~l----~t~a~~~QD~iLEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G  281 (403)
T PF03209_consen  207 SPQARRF-FVFLFL----GTLAFFMQDVILEPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALG  281 (403)
T ss_pred             CCChhHH-HHHHHH----HHHHHHhhHHHcCCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHH
Confidence            5544432 221111    11122222222223333455568888888888999999999988888776 67888888899


Q ss_pred             HHHHHHHHHHHHHHHHHhhhcCCCccccccccCCCCCCCCcccccCCCCcccccccccccccccCCCCCCCCCCcccccc
Q 008137          350 MFGLSSCLVALAVVFFQAAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAHKGNEYLPGACLIDE  429 (576)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  429 (576)
                      +...++++.++.......                                                              
T Consensus       282 ~~~~~~~f~lii~a~~~~--------------------------------------------------------------  299 (403)
T PF03209_consen  282 CLLGALAFALIILAGPLG--------------------------------------------------------------  299 (403)
T ss_pred             HHHHHHHHHHHHHHHhcc--------------------------------------------------------------
Confidence            999998888777664321                                                              


Q ss_pred             cccccccccccccccccCCCCcchhHHHHHHHHHHHHhcCCcccccchhccccccccccccchhHHHHHHHHHHHHHHHH
Q 008137          430 KSTDTLCSDEHRTYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEIYPLRYRGVGGGIAAVSNWTSNLIVSLT  509 (576)
Q Consensus       430 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~g~~~~~~~  509 (576)
                                            ..|......++++++.+..... ..+..-++.+++..|+.+|.-.....+...++..+
T Consensus       300 ----------------------~~~~~~~~~~l~G~g~G~f~vg-als~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~  356 (403)
T PF03209_consen  300 ----------------------SPWLFRPGVFLLGLGNGLFTVG-ALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFL  356 (403)
T ss_pred             ----------------------cchHHHHHHHHHHHhhhHHHHH-HHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHH
Confidence                                  1244444444444443322222 22445677778889999999988888888888888


Q ss_pred             HHHHHHh
Q 008137          510 FLTLTEA  516 (576)
Q Consensus       510 ~~~l~~~  516 (576)
                      .|.+.|.
T Consensus       357 GG~~~D~  363 (403)
T PF03209_consen  357 GGALRDL  363 (403)
T ss_pred             HHHHHHH
Confidence            8877664

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.51  E-value=1.2e-12  Score=147.88  Aligned_cols=140  Identities=18%  Similarity=0.103  Sum_probs=124.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhhhhhhhhhHHHHHHhcc
Q 008137           70 ELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFIGAIIMAIAPQPWVIILGRIFVGLGVGMASMTAPLYISEAS  149 (576)
Q Consensus        70 g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~  149 (576)
                      .+...+..++..++.++.|+++||+|||++++++.++++++.++.+++++...+++++++.|++.++.++....+++|++
T Consensus       598 ~~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~~s~~~ll~~~~l~g~~~~~~~~~~~a~~aEl~  677 (742)
T TIGR01299       598 YFVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFGNSESAMIALLCLFGGLSIAAWNALDVLTVELY  677 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            44466777899999999999999999999999999999999999999999888999999999999999999999999999


Q ss_pred             CcchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHhHHHHHHHHHHHhhccCCh
Q 008137          150 PAKIRGALVSANGFLITGGQFLAYLINLAFTKAPGTWRWMLGVAGLPAVVQFGLMMMLPESP  211 (576)
Q Consensus       150 ~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~Wr~~f~v~~~~~~~~~~~~~~l~esp  211 (576)
                      |+++|++++|+.++...+|.+++|++++.+...  +...+|++.+++.++..++.+++||+.
T Consensus       678 Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~--~~~~pf~i~a~~lll~~ll~~~LPET~  737 (742)
T TIGR01299       678 PSDKRATAFGFLNALCKAAAVLGILIFGSFVGI--TKAAPILFASAALACGGLLALKLPDTR  737 (742)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hhHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence            999999999999999999999999999987654  256788888887777777777788874

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>TIGR00889 2A0110 nucleoside transporter

Probab=99.49  E-value=1.1e-12  Score=140.39  Aligned_cols=164  Identities=15%  Similarity=0.117  Sum_probs=132.9

Q ss_pred             hHHHHHHHHHHhhccchh-----hhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHhcc---
Q 008137           47 VISGALLYIKEDFRDVEK-----KTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFIGAIIMAIAP---  118 (576)
Q Consensus        47 ~~~~~~~~i~~~~~~~~~-----~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~---  118 (576)
                      ......+...++.+.+..     .....+.+.++..++..++.++.|++.||+|||+++.++.++.+++..+.....   
T Consensus       226 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~~~~  305 (418)
T TIGR00889       226 ITNIFGNGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGDPEY  305 (418)
T ss_pred             HHHHhHHHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCcch
Confidence            344555666666664431     112348999999999999999999999999999999999999998877776642   


Q ss_pred             -hHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHH-HHHHHHHHHHHHHHHHhcCCCc-----hhHHHHH
Q 008137          119 -QPWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANG-FLITGGQFLAYLINLAFTKAPG-----TWRWMLG  191 (576)
Q Consensus       119 -~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~-~~~~~G~~l~~~l~~~l~~~~~-----~Wr~~f~  191 (576)
                       +++.+++.+++.|++.+...+....+++|++|+++|++++++.+ ...++|.++||+++|.+.+..+     +|++.|.
T Consensus       306 ~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~  385 (418)
T TIGR00889       306 FGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWL  385 (418)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHH
Confidence             34667788999999999989999999999999999999999997 6788999999999999887642     3999999


Q ss_pred             HhHHHHHHHHHH-HhhccCC
Q 008137          192 VAGLPAVVQFGL-MMMLPES  210 (576)
Q Consensus       192 v~~~~~~~~~~~-~~~l~es  210 (576)
                      +.+++.++..++ +++++|+
T Consensus       386 ~~~~~~~i~~~l~~~~~~~~  405 (418)
T TIGR00889       386 FFAGYIAILAVLFMIFFKYS  405 (418)
T ss_pred             HHHHHHHHHHHHHHHHhCCc
Confidence            988887776655 5556766

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=99.49  E-value=1.2e-11  Score=132.46  Aligned_cols=366  Identities=16%  Similarity=0.125  Sum_probs=228.0

Q ss_pred             HHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhccchhhh--HHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHH
Q 008137           29 KLALSAGIGGLLFGYDTGVISGALLYIKEDFRDVEKKT--WLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVL  106 (576)
Q Consensus        29 ~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~--~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~  106 (576)
                      .+.....+-.+..++.........+.....++......  ...+.......+...+.++..|.++||+|||..+.+....
T Consensus        22 ~~~~~~fl~~fa~~l~~~~~~~~~~~~~ct~~~~~~~~~~~~~~~~~~~~~~~~~i~s~~iG~lSD~~grk~~L~~~~~~  101 (463)
T KOG2816|consen   22 HLEPLLFLYMFSWGLSSTVMTNVILYLACTFGDDYQLENGLLLGVKQVTAGLLTLISSPLIGALSDRYGRKVVLLLPLFG  101 (463)
T ss_pred             HHHHHHHHHHHHHHhcCcchhhhhhhhhcccccCccchhhhhhhHHHHhhHHHHHHHHhhhHHhhhhhhhhhhHHHHHHH
Confidence            34444445455555555555556666665555322211  1113333344678888999999999999999999999999


Q ss_pred             HHHHHHHHHhcchHHHHHHHHHHHHhh--hhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Q 008137          107 FFIGAIIMAIAPQPWVIILGRIFVGLG--VGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFTKAPG  184 (576)
Q Consensus       107 ~~i~~~~~~~~~~~~~l~~~R~l~G~~--~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~  184 (576)
                      ..+..+...+.. +|.+ +   +.|+.  .+.......++++|....++|....++.......+..++|.+++.+....+
T Consensus       102 ~~l~~~~~~~~~-~~~~-~---~~~l~g~~~~~~s~~~a~vadis~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~~~~~  176 (463)
T KOG2816|consen  102 TILPALCLLFQG-YWFF-L---LLGLSGGFSAIFSVGFAYVADISSEEERSSSIGLLSGTFGAGLVIGPALGGYLVKFLG  176 (463)
T ss_pred             HHHhHHHHHHHH-HHHh-h---hcccccchhhhhhhhhhheeeccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcC
Confidence            888888877755 3333 3   44442  344567788899999999999999999999999999999999999988776


Q ss_pred             hhHHHHHHhHHHHHHHHHH-HhhccCChhHHhhcCCHHHHHHHHHHhCCchhhhHHHHHHHHHHHhhhhhhcccchhhHH
Q 008137          185 TWRWMLGVAGLPAVVQFGL-MMMLPESPRWLYRQNKVDEARAILEKIYPADQVEEEVNLLKQSVENEKAEEGLIGKDMIS  263 (576)
Q Consensus       185 ~Wr~~f~v~~~~~~~~~~~-~~~l~esp~~l~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (576)
                       .-.+|.+..+..++..+. +.++||+-....++   + +.  .+.....                  ........   .
T Consensus       177 -~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~~~---~-~~--~~~~~~~------------------~~~~~~~~---~  228 (463)
T KOG2816|consen  177 -IALVFLIAAASGILSLLYMLLFLPESLQEKERS---D-AT--LRELTPG------------------SLDSSHVA---D  228 (463)
T ss_pred             -chHHHHHHHHHHHHHHHHHhhccccccCccccc---c-cc--ccccCCC------------------cccchhhh---h
Confidence             788888888888887766 55678874311111   0 00  0000000                  00000000   1


Q ss_pred             HhhhhcccchhhhhhHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcCCchhHHHHHHHHHhHHHHHHHHHHH-HhhcccCC
Q 008137          264 RLKGAFGNKIVRRGLYAGVTVQVAQQFVGINTVMYYSPTIVQFAGFASKSTALALSLVTSGLNALGSIVSM-AFVDKYGR  342 (576)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g-~l~dk~gr  342 (576)
                      ..+...+ ..-++..+.......+..........-..+.++......+....+.+.........++.++.. .+...++.
T Consensus       229 ~~~~~~~-~~~~r~~l~l~l~~~~~~~~~~~~~~~~~~~yl~~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~  307 (463)
T KOG2816|consen  229 AFQSLTK-VGPDRLLLLLLLVAFLSSLPEAGGASDVLLLYLKAKFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSILGE  307 (463)
T ss_pred             hhhhhcc-cCCCccchHHHHHHHHHHHHHhcCceeEEEEEEeeecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            1111111 111121222222222211111111111224455555555677777555666666777776666 77788898


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccccccCCCCCCCCcccccCCCCcccccccccccccccCCCCCCCCC
Q 008137          343 RRLMIVSMFGLSSCLVALAVVFFQAAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAHKGNEYLP  422 (576)
Q Consensus       343 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  422 (576)
                      |+++..|...-.+....+++....                                                        
T Consensus       308 ~~~i~lGl~~~~~~~~~~af~~~~--------------------------------------------------------  331 (463)
T KOG2816|consen  308 KRLISLGLLSEFLQLLLFAFATET--------------------------------------------------------  331 (463)
T ss_pred             hhHhhHHHHHHHHHHHHHHHhccc--------------------------------------------------------
Confidence            888888888888887777766431                                                        


Q ss_pred             CcccccccccccccccccccccccCCCCcchhHHHHHHHHHHHHhcCCcccccchhccccccccccccchhHHHHHHHHH
Q 008137          423 GACLIDEKSTDTLCSDEHRTYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEIYPLRYRGVGGGIAAVSNWTS  502 (576)
Q Consensus       423 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~g  502 (576)
                                                     |.......  ...+.....|...++.+...+++.+|.+.++...+..++
T Consensus       332 -------------------------------w~~~~~~v--~~~~~~~~~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~  378 (463)
T KOG2816|consen  332 -------------------------------WMMFAAGV--VVALAGIVFPAIRAFASILVSPEEQGKVFGIISGIEGLS  378 (463)
T ss_pred             -------------------------------hhhhHHHH--HHHhhcchhHHHHhHHHhhcccccccchhhHHHHHHHHh
Confidence                                           33222222  222333445566678888889999999999999999999


Q ss_pred             HHHHHHHHHHHHHhh
Q 008137          503 NLIVSLTFLTLTEAL  517 (576)
Q Consensus       503 ~~~~~~~~~~l~~~~  517 (576)
                      +.++|.+.+.++..+
T Consensus       379 ~~~~~~~~~~i~~~t  393 (463)
T KOG2816|consen  379 GVVSPALYGNIFALT  393 (463)
T ss_pred             hhhhHHHHHHHHHHH
Confidence            999999999886543

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.47  E-value=1.2e-12  Score=136.73  Aligned_cols=152  Identities=16%  Similarity=0.052  Sum_probs=129.8

Q ss_pred             hhHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHhcchH--HHH
Q 008137           46 GVISGALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFIGAIIMAIAPQP--WVI  123 (576)
Q Consensus        46 ~~~~~~~~~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~--~~l  123 (576)
                      .......+.+.++++.++.+.   +++.+.+.++..+++++.|++.||+|||+.+.++.++..++.++..+.++.  ..+
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (377)
T TIGR00890       222 LLLIGLYKPYGQSLGLSDGFL---VLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIPMLNDVLF  298 (377)
T ss_pred             HHHHHHHHHHHHHcCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcccchhHHH
Confidence            334445566778888777666   889999999999999999999999999999999999999988888777643  335


Q ss_pred             HHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHhHHHHHHHH
Q 008137          124 ILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFTKAPGTWRWMLGVAGLPAVVQF  201 (576)
Q Consensus       124 ~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~Wr~~f~v~~~~~~~~~  201 (576)
                      ++..++.|++.+...+....++.|.+|+++|+++.++.+....+|..+++.+.+.+.+..+ |++.|++.+++.++.+
T Consensus       299 ~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g-~~~~f~~~~~~~~~~~  375 (377)
T TIGR00890       299 LATVALVFFTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEIG-FEYTFIVTGAFALTSL  375 (377)
T ss_pred             HHHHHHHHHHhccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhc-hhhHHHHHHHHHHHhc
Confidence            5678889998888888888899999999999999999999999999999999999988776 9999999887776643

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.47  E-value=1.1e-12  Score=140.33  Aligned_cols=141  Identities=15%  Similarity=0.118  Sum_probs=123.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhhhhhhhhhHHHHHHhc
Q 008137           69 QELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFIGAIIMAIAPQPWVIILGRIFVGLGVGMASMTAPLYISEA  148 (576)
Q Consensus        69 ~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~  148 (576)
                      .|++.++..++..++++++|++.||+|||+.+.++.++.+++.++.+++++++.+++.+++.|++.+...+....++.|.
T Consensus       264 ~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~  343 (420)
T PRK09528        264 FGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFATGPLEVSILKLLHAFEVPFLLVGVFKYITLN  343 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            38999999999999999999999999999999999999999999999999999999999999999988888888999999


Q ss_pred             cCcchhhHHHHH-HHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHhHHHHHHHHHH-HhhccCC
Q 008137          149 SPAKIRGALVSA-NGFLITGGQFLAYLINLAFTKAPGTWRWMLGVAGLPAVVQFGL-MMMLPES  210 (576)
Q Consensus       149 ~~~~~R~~~~~~-~~~~~~~G~~l~~~l~~~l~~~~~~Wr~~f~v~~~~~~~~~~~-~~~l~es  210 (576)
                      +|++.|+...+. +++...+|.++++++.|++.+..+ ||..|.+.+++.++..+. ++.++++
T Consensus       344 ~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G-~~~~f~~~~~~~~i~~~~~~~~~~~~  406 (420)
T PRK09528        344 FDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIG-FQGTYLILGGIVLLFTLISVFTLSGD  406 (420)
T ss_pred             cCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhC-chHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            999998877655 677888999999999999999877 999999988877665554 4444444

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.46  E-value=4.6e-12  Score=134.81  Aligned_cols=162  Identities=15%  Similarity=0.030  Sum_probs=136.8

Q ss_pred             hhHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHhcchHHHHHH
Q 008137           46 GVISGALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFIGAIIMAIAPQPWVIIL  125 (576)
Q Consensus        46 ~~~~~~~~~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~  125 (576)
                      ..+....|.+.++.|.+..+.   +++.+...++..++.++.|++.||+|||+.+..+.+...++.++..+.++.+.+.+
T Consensus       237 ~~~~~~~p~~~~~~g~s~~~~---~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (406)
T PRK11551        237 YFLLNWLPSLLVGQGLSRSQA---GLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAAPSFAGMLL  313 (406)
T ss_pred             HHHHHHHHHHHHhCCCChhhh---hHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence            344445678888888887777   89999999999999999999999999999998887777777777777888888888


Q ss_pred             HHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHhHHHHHHHHHHHh
Q 008137          126 GRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFTKAPGTWRWMLGVAGLPAVVQFGLMM  205 (576)
Q Consensus       126 ~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~Wr~~f~v~~~~~~~~~~~~~  205 (576)
                      .-++.|++.++..+...+++.|.+|+++|++++++.+....+|..++|.+.+.+.+..++|...+++.+...++..+..+
T Consensus       314 ~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~  393 (406)
T PRK11551        314 AGFAAGLFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALGRSTVGVIGASIPVILVAALAAL  393 (406)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccCCchHHHHHHHHHHHHHHHHHHH
Confidence            88999998888888899999999999999999999999999999999999999988766688888877776666655544


Q ss_pred             hccCC
Q 008137          206 MLPES  210 (576)
Q Consensus       206 ~l~es  210 (576)
                      .+.++
T Consensus       394 ~~~~~  398 (406)
T PRK11551        394 LLVSR  398 (406)
T ss_pred             HHhcc
Confidence            44333

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.44  E-value=6.2e-12  Score=129.70  Aligned_cols=166  Identities=22%  Similarity=0.305  Sum_probs=147.2

Q ss_pred             HHHhhhhhhhhHHHHHHHHHHhh-ccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchH-HHHHHHHHHHHHHHHH
Q 008137           37 GGLLFGYDTGVISGALLYIKEDF-RDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKI-SLLGADVLFFIGAIIM  114 (576)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~-~~~~~~~~~~i~~~~~  114 (576)
                      ..+.............|.+.++. +.++.+.   +++.+...++..++.++.|++.||+|||+ .+.++..+..++.++.
T Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  259 (352)
T cd06174         183 AFFLLSFGYYGLLTYLPLYLQEVLGLSAAEA---GLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLL  259 (352)
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHhcCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence            34445555566666777777665 7777776   99999999999999999999999999999 9999999999999999


Q ss_pred             HhcchHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHhH
Q 008137          115 AIAPQPWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFTKAPGTWRWMLGVAG  194 (576)
Q Consensus       115 ~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~Wr~~f~v~~  194 (576)
                      .+.++.+.+.+..++.|++.+...+....++.|..|+++|++.+++.+....+|..+++.+.+.+.+..+ |++.+++.+
T Consensus       260 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~~-~~~~~~~~~  338 (352)
T cd06174         260 ALAPSLALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGG-YGGVFLILA  338 (352)
T ss_pred             HHhccHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC-cchHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999988776 999999999


Q ss_pred             HHHHHHHHHHhh
Q 008137          195 LPAVVQFGLMMM  206 (576)
Q Consensus       195 ~~~~~~~~~~~~  206 (576)
                      ++.++..+..+.
T Consensus       339 ~~~~i~~i~~~~  350 (352)
T cd06174         339 ALALLAALLLLL  350 (352)
T ss_pred             HHHHHHHHHhee
Confidence            988887766544

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.43  E-value=7.1e-12  Score=133.07  Aligned_cols=157  Identities=13%  Similarity=0.103  Sum_probs=129.8

Q ss_pred             HHHHHHH-HHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHhcchHHHHHHH
Q 008137           48 ISGALLY-IKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFIGAIIMAIAPQPWVIILG  126 (576)
Q Consensus        48 ~~~~~~~-i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~  126 (576)
                      +....|. +.++++.+..+.   +++.+...++..++.++.|+++||+|||+.+..+.+...+......+.++++.+++.
T Consensus       235 ~~~~~p~~l~~~~~~~~~~~---g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  311 (393)
T PRK15011        235 YIINMPLFIINELHLPEKLA---GVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMAHSPAILLGL  311 (393)
T ss_pred             HHHHHHHHHHHHcCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence            3344555 456788887777   888888888888899999999999999998887776666655555667788888899


Q ss_pred             HHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHhHHHHHHHHHHHhh
Q 008137          127 RIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFTKAPGTWRWMLGVAGLPAVVQFGLMMM  206 (576)
Q Consensus       127 R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~Wr~~f~v~~~~~~~~~~~~~~  206 (576)
                      |++.+++.|...+....+..|.+|+ +|++++++++....+|..+++.+++.+.+..+ |+..|++.+++.++.++..++
T Consensus       312 ~~l~~~~~g~~~~~~~~~~~~~~p~-~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g-~~~~~~~~~~~~~~~~~~~~~  389 (393)
T PRK15011        312 QLLNAIYIGILGGIGMLYFQDLMPG-QAGSATTLYTNTSRVGWIIAGSLAGIVAEIWN-YHAVFWFALVMIIATLFCLLR  389 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hHHHHHHHHHHHHHHHHHHHh
Confidence            9999998888888888889999975 59999999999999999999999999988776 999999988888887777766


Q ss_pred             ccC
Q 008137          207 LPE  209 (576)
Q Consensus       207 l~e  209 (576)
                      +||
T Consensus       390 ~~~  392 (393)
T PRK15011        390 IKD  392 (393)
T ss_pred             hcC
Confidence            664

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.41  E-value=8.2e-12  Score=132.72  Aligned_cols=159  Identities=19%  Similarity=0.194  Sum_probs=132.7

Q ss_pred             hhHHHHHHHHHHhhccchh-hhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHhcchHHHHH
Q 008137           46 GVISGALLYIKEDFRDVEK-KTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFIGAIIMAIAPQPWVII  124 (576)
Q Consensus        46 ~~~~~~~~~i~~~~~~~~~-~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~  124 (576)
                      ....+.++.+..+.+.+.. .....+.+.++..++..++.++.|++.||+|||+.+..+.++..++.+...+.++.+.++
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (408)
T PRK09874        236 GSIAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFVQTPLQLG  315 (408)
T ss_pred             HHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHhccHHHHH
Confidence            3445556665555432222 222346777788888999999999999999999999999988888888888888899999


Q ss_pred             HHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHhHHHHHHHHHHH
Q 008137          125 LGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFTKAPGTWRWMLGVAGLPAVVQFGLM  204 (576)
Q Consensus       125 ~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~Wr~~f~v~~~~~~~~~~~~  204 (576)
                      +.+++.|++.+...+...+++.+..|+++|++.+++++....+|..+||.+++.+.+..+ |++.|++.+++.++..+..
T Consensus       316 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~g-~~~~f~~~~~~~l~~~~~~  394 (408)
T PRK09874        316 ILRFLLGAADGALLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANYG-FRAVFLVTAGVVLFNAVYS  394 (408)
T ss_pred             HHHHHHHhhhHhhHHHHHHHHHHhCCcccceeeehHHHHHHHHHHHhhHHHHHHHHhhcc-hhHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999988877 9999999988888776654


Q ss_pred             h
Q 008137          205 M  205 (576)
Q Consensus       205 ~  205 (576)
                      +
T Consensus       395 ~  395 (408)
T PRK09874        395 W  395 (408)
T ss_pred             H
Confidence            3

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.41  E-value=1.1e-11  Score=131.52  Aligned_cols=159  Identities=16%  Similarity=0.209  Sum_probs=133.5

Q ss_pred             hhHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHhcchHHHHHH
Q 008137           46 GVISGALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFIGAIIMAIAPQPWVIIL  125 (576)
Q Consensus        46 ~~~~~~~~~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~  125 (576)
                      ......+|.+.++.+.  .+.   ++..+.+.++..++.++.|++.||+|||+.+..+..+.+++.++.++.++.+.+++
T Consensus       233 ~~~~~~~~~~~~~~~~--~~~---~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (399)
T PRK05122        233 GTIATFITLYYAARGW--DGA---ALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLAPSPWMALI  307 (399)
T ss_pred             HHHHHHHHHHHHHccc--ccc---hHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHH
Confidence            3344445555555554  233   56677888899999999999999999999999999998988888888889888889


Q ss_pred             HHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHhHHHHHHHHHHHh
Q 008137          126 GRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFTKAPGTWRWMLGVAGLPAVVQFGLMM  205 (576)
Q Consensus       126 ~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~Wr~~f~v~~~~~~~~~~~~~  205 (576)
                      .+++.|++.+...+.....+.|.+|+++|+++.++++....+|..+++++.+.+.+..+ |++.|++.+++.++.++..+
T Consensus       308 ~~~l~G~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g-~~~~~~~~~~~~~~~~~~~~  386 (399)
T PRK05122        308 GAALTGFGFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASWFG-YPSIFLAAALAALLGLALTW  386 (399)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-HHHHHHHHHHHHHHHHHHHH
Confidence            99999999999998888888999999999999999999999999999999999988776 99999998888887776655


Q ss_pred             hccCC
Q 008137          206 MLPES  210 (576)
Q Consensus       206 ~l~es  210 (576)
                      ++++.
T Consensus       387 ~~~~~  391 (399)
T PRK05122        387 LLYRR  391 (399)
T ss_pred             Hhccc
Confidence            55543

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.40  E-value=1.9e-11  Score=129.22  Aligned_cols=158  Identities=14%  Similarity=0.018  Sum_probs=136.9

Q ss_pred             hhhhhhhHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHhcchH
Q 008137           41 FGYDTGVISGALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFIGAIIMAIAPQP  120 (576)
Q Consensus        41 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~  120 (576)
                      .......+....|.+.+++|.+..+.   |++.+...++..++.++.+++.||+|+|+.+.++.++.++..++.++++++
T Consensus       217 ~~~~~~~~~~~~~~~l~~~g~s~~~~---g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~  293 (382)
T TIGR00902       217 IQGAHAAYYGFSAIYWQAAGISASAT---GLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAIEAF  293 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCHhHH---HHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhHhhH
Confidence            33444445556677778899888888   999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHH-HHHHHHHHHHHHHHHHhcCCCchhHHHHHHhHHHHHH
Q 008137          121 WVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANG-FLITGGQFLAYLINLAFTKAPGTWRWMLGVAGLPAVV  199 (576)
Q Consensus       121 ~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~-~~~~~G~~l~~~l~~~l~~~~~~Wr~~f~v~~~~~~~  199 (576)
                      +.+++.++++|++.|...+....++.+. |+++|++++++++ ...++|..+++.++|.+.+..+ + ..|++.++++++
T Consensus       294 ~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g-~-~~~~~~~~~~~~  370 (382)
T TIGR00902       294 PLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTLG-A-GTFVFMAIIAAA  370 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-H-HHHHHHHHHHHH
Confidence            9999999999999999999999999998 9999999999986 5678999999999999999886 6 567777777666


Q ss_pred             HHHHH
Q 008137          200 QFGLM  204 (576)
Q Consensus       200 ~~~~~  204 (576)
                      .++++
T Consensus       371 ~~~~~  375 (382)
T TIGR00902       371 AFFLI  375 (382)
T ss_pred             HHHHH
Confidence            55443

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=99.40  E-value=2.7e-11  Score=130.06  Aligned_cols=360  Identities=16%  Similarity=0.132  Sum_probs=213.9

Q ss_pred             HHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhcc---C--chHHHHHHHHHHHHHHHHHHhcc----
Q 008137           48 ISGALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRF---G--RKISLLGADVLFFIGAIIMAIAP----  118 (576)
Q Consensus        48 ~~~~~~~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~---G--rr~~~~~~~~~~~i~~~~~~~~~----  118 (576)
                      ..+..|.+.++++.++.+.   ..+.+...+...+ -+++|.++|-+   |  ||+-++++.++..++.+..+..+    
T Consensus         9 ~~~~~~~l~~~l~ls~~~~---~~~~~~~~lPw~~-Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~   84 (433)
T PF03092_consen    9 RLAIYPFLKDDLGLSPAQL---QRLSSLASLPWSI-KPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASES   84 (433)
T ss_pred             HHHHHHHHHHHcCCCHHHH---HHHHHHHhCchHH-hhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccc
Confidence            3455678889999999888   7777777777776 68999999976   3  55666677777766666555543    


Q ss_pred             hHHHHHHHHHHHHhhhhhhhhhHHHHHHhccC--cchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHhHHH
Q 008137          119 QPWVIILGRIFVGLGVGMASMTAPLYISEASP--AKIRGALVSANGFLITGGQFLAYLINLAFTKAPGTWRWMLGVAGLP  196 (576)
Q Consensus       119 ~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~--~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~Wr~~f~v~~~~  196 (576)
                      +.....++-++..+|.+.....+-+++.|...  ++.||..++.......+|.+++..++|.+.+..+ +|+.|.+.+++
T Consensus        85 s~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~-~~~~f~i~~~~  163 (433)
T PF03092_consen   85 SAAIAVVLLFLASFGYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLLDSFG-PQGVFLISAAL  163 (433)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhcCC-CeEEehHHHHH
Confidence            46667777788999999999999999999983  3447889999999999999999999999988877 99999998887


Q ss_pred             HHHHHHHHhhccCChhHHhhcCCHHHHHHHHHHhCCchhhhHHHHHHHHHHHhhhhhhcccchhhHHHhhhhcccchhhh
Q 008137          197 AVVQFGLMMMLPESPRWLYRQNKVDEARAILEKIYPADQVEEEVNLLKQSVENEKAEEGLIGKDMISRLKGAFGNKIVRR  276 (576)
Q Consensus       197 ~~~~~~~~~~l~esp~~l~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (576)
                      ..+.++..+++.|+.+ .+.+.+.....+            ++.+....           ..++.....++.++.+..++
T Consensus       164 ~~l~~~~~~~~~~e~~-~~~~~~~~~~~~------------~~~~~~~~-----------~~~~~~~~l~~~~~~~~i~~  219 (433)
T PF03092_consen  164 PLLMLIVALFLLEERK-VRPADEVFSFGK------------EEVPCLFG-----------SFREQLSELWRALQQRAIWQ  219 (433)
T ss_pred             HHHHHHHHHHhhhhcc-ccccchhhcccc------------cccchhhH-----------HHHHHHHHHHHHHhhhHHHH
Confidence            7776665444433211 000000000000            00000000           01112245556666655555


Q ss_pred             hhHHHHHHHHHHHHHhhHH-HHhhhHHHHHhhc--CCchhHHHHHHHHHhHHHHHHHHHHHHhhcccCChHHHHHHHHHH
Q 008137          277 GLYAGVTVQVAQQFVGINT-VMYYSPTIVQFAG--FASKSTALALSLVTSGLNALGSIVSMAFVDKYGRRRLMIVSMFGL  353 (576)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dk~grr~~~~~~~~~~  353 (576)
                      .......+..+.... ... ..++.   ....+  +.+....+.+..+..++.++|..+......+..-|+++.+..++.
T Consensus       220 ~~~~~~~~~~~~~~~-~~a~~fy~~---~~~~~gp~fs~~f~~~~~~vg~~~~l~g~~~y~~~~~~~~~R~~~~~t~~~~  295 (433)
T PF03092_consen  220 PILFFIFFFNLPPSI-SSASSFYFQ---TDALGGPHFSPSFYGTLSIVGSIASLLGILLYRKYFSNWSWRRIFVVTTLVS  295 (433)
T ss_pred             HHHHHHHHHHhccCC-CCccEEEEE---eccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence            443111110000000 001 11111   11122  125666666667777777777777776666666677765555443


Q ss_pred             HHHHHHHHHHHHHhhhcCCCccccccccCCCCCCCCcccccCCCCcccccccccccccccCCCCCCCCCCcccccccccc
Q 008137          354 SSCLVALAVVFFQAAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAHKGNEYLPGACLIDEKSTD  433 (576)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  433 (576)
                      .+..+.-....                                                              ..+|-  
T Consensus       296 ~~~~l~~~~lv--------------------------------------------------------------~~~n~--  311 (433)
T PF03092_consen  296 VLASLFDLLLV--------------------------------------------------------------TRWNL--  311 (433)
T ss_pred             HHHhcccEEEE--------------------------------------------------------------EEEee--
Confidence            33322111000                                                              00000  


Q ss_pred             cccccccccccccCCCCcchhHHHHHHHHHHHHhcCCcccccchhccccccccccccchhHHHHHHHHHHHHHHHHHHHH
Q 008137          434 TLCSDEHRTYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEIYPLRYRGVGGGIAAVSNWTSNLIVSLTFLTL  513 (576)
Q Consensus       434 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~g~~~~~~~~~~l  513 (576)
                                 ..|.|++.-+.  .--.+......+.+-|. ..+.+|+.|+..-|+..++...+.++|..++..+...+
T Consensus       312 -----------~~Gi~d~~f~l--gd~~l~~~~~~i~~mP~-lvl~a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~l  377 (433)
T PF03092_consen  312 -----------DLGIPDQWFAL--GDTILEEVIGMIAFMPS-LVLAARLCPKGSEGTVYALLASFSNLGSSVSSTLGAFL  377 (433)
T ss_pred             -----------eeCcCCeEEEE--EhHHHHHHHHHHHHHHH-HHHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                       01112221111  11111112222222222 35678999999999999999999999999999999888


Q ss_pred             HHhhc
Q 008137          514 TEALG  518 (576)
Q Consensus       514 ~~~~g  518 (576)
                      .+..|
T Consensus       378 ~~~~~  382 (433)
T PF03092_consen  378 MELFG  382 (433)
T ss_pred             HHHcC
Confidence            88765

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.37  E-value=4.3e-11  Score=125.48  Aligned_cols=154  Identities=15%  Similarity=0.153  Sum_probs=128.5

Q ss_pred             HHHH-HHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Q 008137           51 ALLY-IKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFIGAIIMAIAPQPWVIILGRIF  129 (576)
Q Consensus        51 ~~~~-i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~R~l  129 (576)
                      ..|. +.++++.++.+.   +++.+...+...++.++.|++.||+|||+.+.++.++..+..+...+.++.+.+.+.+++
T Consensus       221 ~~~~~~~~~~g~~~~~~---g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (375)
T TIGR00899       221 NMPLLIIHELGLPDKLA---GLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAADNSLWALLMLQLL  297 (375)
T ss_pred             hhHHHHHHHcCCCHHHH---HHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444 456778877776   888877777788889999999999999999988887776666666677888888889999


Q ss_pred             HHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHhHHHHHHHHHHHhhccC
Q 008137          130 VGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFTKAPGTWRWMLGVAGLPAVVQFGLMMMLPE  209 (576)
Q Consensus       130 ~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~Wr~~f~v~~~~~~~~~~~~~~l~e  209 (576)
                      .|++.+...+....++.|..|+ +|++++++++....+|..+++.+.+.+.+..+ |+..|++.++..++..+..++++|
T Consensus       298 ~g~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~  375 (375)
T TIGR00899       298 NAIFIGILAGIGMLYFQDLMPG-RAGAATTLYTNTGRVGWIIAGSVGGILAERWS-YHAVYWFAIVMLIVALFCLLLIKD  375 (375)
T ss_pred             HHHHHHHHHHHHHHHHHHhCcc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHHHHheecC
Confidence            9999998888888999999875 56799999999999999999999999988776 999999998888877776665543

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PRK12382 putative transporter; Provisional

Probab=99.36  E-value=3e-11  Score=127.98  Aligned_cols=154  Identities=14%  Similarity=0.213  Sum_probs=131.4

Q ss_pred             hhHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHhcchHHHHHH
Q 008137           46 GVISGALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFIGAIIMAIAPQPWVIIL  125 (576)
Q Consensus        46 ~~~~~~~~~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~  125 (576)
                      .......|.+.++.+.+  +.   ++..+.+.++..+++++.|++.||+|+|+.+.++..+.+++.++..+.++.+.+.+
T Consensus       233 ~~~~~~~~~~~~~~~~~--~~---~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (392)
T PRK12382        233 AVIGTFVSLYFASKGWA--MA---GFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLAPTAWVALA  307 (392)
T ss_pred             hHHHHHHHHHHHhcCCc--hh---HHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHcccHHHHHH
Confidence            33444555555665543  23   56677788888999999999999999999999999999999888888888888889


Q ss_pred             HHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHhHHHHHHHHHHHh
Q 008137          126 GRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFTKAPGTWRWMLGVAGLPAVVQFGLMM  205 (576)
Q Consensus       126 ~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~Wr~~f~v~~~~~~~~~~~~~  205 (576)
                      .+++.|++.+...+.....+.|.+|+++|+++.++++....+|..+++.+.+.+.+..+ |++.|.+.+++.++..+..+
T Consensus       308 ~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g-~~~~~~~~~~~~~~~~~~~~  386 (392)
T PRK12382        308 GAALTGAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSFG-YPSVFLAGAISAVLGIIVTI  386 (392)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-chHHHHHHHHHHHHHHHHHH
Confidence            99999999998888888899999999999999999999999999999999999998877 99999999888777666544

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.35  E-value=6.6e-11  Score=126.58  Aligned_cols=160  Identities=13%  Similarity=0.140  Sum_probs=135.5

Q ss_pred             HHHHHHHHHHh-hccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHhcchHHHHHHH
Q 008137           48 ISGALLYIKED-FRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFIGAIIMAIAPQPWVIILG  126 (576)
Q Consensus        48 ~~~~~~~i~~~-~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~  126 (576)
                      +....|.+.++ +|.+....   +++.+...++..++.++.+++.||.++++.+..+.++.+++.++.++.++.+.+.++
T Consensus       242 ~~~~~p~~~~~~~g~~~~~~---g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (417)
T PRK10489        242 VRVLYPALADEVWQMGAAQI---GLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLMPMWILAVLC  318 (417)
T ss_pred             HHHhhHHHHHhccCCChhHh---HHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHccchHHHHHHH
Confidence            34456777666 88877776   999999999999999999999999888888888888888888888888988888889


Q ss_pred             HHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHhHHHHHHH-HHHHh
Q 008137          127 RIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFTKAPGTWRWMLGVAGLPAVVQ-FGLMM  205 (576)
Q Consensus       127 R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~Wr~~f~v~~~~~~~~-~~~~~  205 (576)
                      .++.|++.+...+...+++.|..|++.|++++++++....+|..+|+.+.+.+.+..+ ++..+++.++..++. .+.++
T Consensus       319 ~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g-~~~~~~~~~~~~~~~~~~~~~  397 (417)
T PRK10489        319 LALFGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMMT-PVASASASGFGLLIIGVLLLL  397 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhc-hhhHHHHHHHHHHHHHHHHHH
Confidence            9999999988888888999999999999999999999999999999999999998876 788887776665554 44456


Q ss_pred             hccCCh
Q 008137          206 MLPESP  211 (576)
Q Consensus       206 ~l~esp  211 (576)
                      .+++.+
T Consensus       398 ~~~~~~  403 (417)
T PRK10489        398 VLGELR  403 (417)
T ss_pred             hccccc
Confidence            666654

>TIGR00895 2A0115 benzoate transport

Probab=99.32  E-value=6.1e-11  Score=124.85  Aligned_cols=171  Identities=17%  Similarity=0.112  Sum_probs=128.1

Q ss_pred             HHHHHHhhHHHHhhhHHHHHhhcCCchhHHHHHHHHHhHHHHHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHHHHHHH
Q 008137          286 VAQQFVGINTVMYYSPTIVQFAGFASKSTALALSLVTSGLNALGSIVSMAFVDKYGRRRLMIVSMFGLSSCLVALAVVFF  365 (576)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dk~grr~~~~~~~~~~~~~~~~~~~~~~  365 (576)
                      .+..........++.|.+.++.+. +..+.+.+.....++.+++.++.|+++||+|||+.+..+.++..++.+++.....
T Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~  104 (398)
T TIGR00895        26 MLMDGYDLAAMGFAAPAISAEWGL-DPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILLFSVFTLLCALATN  104 (398)
T ss_pred             HHHHHHHHHHHHhhHHHHhhccCC-CHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHccc
Confidence            333334445566677888777766 6677788888888889999999999999999999999888877777665543311


Q ss_pred             HhhhcCCCccccccccCCCCCCCCcccccCCCCcccccccccccccccCCCCCCCCCCcccccccccccccccccccccc
Q 008137          366 QAAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAHKGNEYLPGACLIDEKSTDTLCSDEHRTYFI  445 (576)
Q Consensus       366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  445 (576)
                                                                                                      
T Consensus       105 --------------------------------------------------------------------------------  104 (398)
T TIGR00895       105 --------------------------------------------------------------------------------  104 (398)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cCCCCcchhHHHHHHHHHHHHhcCCcccccchhccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHhhccchhhHH
Q 008137          446 SGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEIYPLRYRGVGGGIAAVSNWTSNLIVSLTFLTLTEALGSAGTFLL  525 (576)
Q Consensus       446 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~  525 (576)
                             .+..++...+.+.+.+ ...+...++..|.+|++.|+++.|+.+....+|..+++.+.+.+.+..||+..+++
T Consensus       105 -------~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~  176 (398)
T TIGR00895       105 -------VTQLLILRFLAGLGLG-GLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYV  176 (398)
T ss_pred             -------hHHHHHHHHHHhcccc-cchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhcccceeehhh
Confidence                   1222333333333332 33456668889999999999999999999999999999999999999999989888


Q ss_pred             HHHHHHHHHHHHHhhccCCC
Q 008137          526 FAGFSLLGLVAIYLLVPETK  545 (576)
Q Consensus       526 ~~~~~~i~~~~~~~~~~~~~  545 (576)
                      .+++.++..++.+.+.||+.
T Consensus       177 ~~~~~~~~~~~~~~~~~~~~  196 (398)
T TIGR00895       177 GGIAPLLLLLLLMRFLPESI  196 (398)
T ss_pred             hhhHHHHHHHHHHHhCCCCC
Confidence            87777776666667777764

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=99.32  E-value=7.4e-10  Score=112.57  Aligned_cols=272  Identities=13%  Similarity=0.046  Sum_probs=171.8

Q ss_pred             HHHHhhhhhhhhHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHH
Q 008137           36 IGGLLFGYDTGVISGALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFIGAIIMA  115 (576)
Q Consensus        36 l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~  115 (576)
                      ++...+++.    +|..-.+-++++.++.+.   +.+....+....+...+.|.++||+|||+..+.-.++.+++++. -
T Consensus        45 La~~aDWLQ----GpY~Y~LY~~yg~~~~qI---a~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl~-k  116 (354)
T PF05631_consen   45 LAMAADWLQ----GPYLYALYESYGFSEHQI---AILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCLT-K  116 (354)
T ss_pred             HHHHHHHhh----cchhHHHHHHcCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHH-H
Confidence            444444444    333334456889988888   99999999999999999999999999999999999999998864 4


Q ss_pred             hcchHHHHHHHHHHHHhhhhhhhhhHHHH-HHhccC----cchhhHHHHHHH-HHHHHHHHHHHHHHHHhcCCCc-hhHH
Q 008137          116 IAPQPWVIILGRIFVGLGVGMASMTAPLY-ISEASP----AKIRGALVSANG-FLITGGQFLAYLINLAFTKAPG-TWRW  188 (576)
Q Consensus       116 ~~~~~~~l~~~R~l~G~~~g~~~~~~~~~-i~e~~~----~~~R~~~~~~~~-~~~~~G~~l~~~l~~~l~~~~~-~Wr~  188 (576)
                      ..++++.++++|++.|++....+..-.++ +.|+-.    ++..+..++... ...++-.+++.+++.++.+..+ +-..
T Consensus       117 ~~~~~~~L~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~va  196 (354)
T PF05631_consen  117 HSSNYPVLLLGRVLGGIATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVA  196 (354)
T ss_pred             hccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcc
Confidence            56899999999999999999998888776 566532    222233333222 2223334455555656555443 2477


Q ss_pred             HHHHhHHHHHHHHHHHh-hccCChhHHhhcCCHHHHHHHHHHhCCchhhhHHHHHHHHHHHhhhhhhcccchhhHHHhhh
Q 008137          189 MLGVAGLPAVVQFGLMM-MLPESPRWLYRQNKVDEARAILEKIYPADQVEEEVNLLKQSVENEKAEEGLIGKDMISRLKG  267 (576)
Q Consensus       189 ~f~v~~~~~~~~~~~~~-~l~esp~~l~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (576)
                      +|.....+.++..+++. .-+|+......+   .+..                                  ++..+.++.
T Consensus       197 PF~~a~~~l~~~~~~I~~~W~ENyg~~~~~---~~~~----------------------------------~~~~~a~~~  239 (354)
T PF05631_consen  197 PFDAAIVLLAVAAVLILKTWPENYGDTSSS---SSLS----------------------------------GSFREAWRA  239 (354)
T ss_pred             hHHHHHHHHHHHHHHHHhcccccCCCcccc---cchH----------------------------------HHHHHHHHH
Confidence            88888877776666544 345543210000   0000                                  000022223


Q ss_pred             hcccchhhhhhHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcCCchhHHHHHHHHHhHHHHHHHHHHHHhhc-ccCChHHH
Q 008137          268 AFGNKIVRRGLYAGVTVQVAQQFVGINTVMYYSPTIVQFAGFASKSTALALSLVTSGLNALGSIVSMAFVD-KYGRRRLM  346 (576)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~d-k~grr~~~  346 (576)
                      +.++    ++++.....+.++....+..+..|.|.+-   ......--|++...+.+..++|+.+...+.. +......+
T Consensus       240 i~~d----~ril~LG~~qslFE~smy~FVflWtPaL~---~~~~~~P~GlIFssFM~a~MlGS~lf~~l~s~~~~~e~~l  312 (354)
T PF05631_consen  240 ILSD----PRILLLGLIQSLFEGSMYLFVFLWTPALD---PDDEELPLGLIFSSFMVAMMLGSSLFSRLLSKSLRPESLL  312 (354)
T ss_pred             HHcC----chhHHHHHHHHHHHHHHHHheeeeeceec---CCCCCCCchHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHH
Confidence            3333    33455666677777777777788888876   2212334677778788888999988866554 43333444


Q ss_pred             HHHHHHHHHHHHH
Q 008137          347 IVSMFGLSSCLVA  359 (576)
Q Consensus       347 ~~~~~~~~~~~~~  359 (576)
                      ...+.+.++++.+
T Consensus       313 ~~v~~~aa~~l~~  325 (354)
T PF05631_consen  313 RYVFAVAAVSLAI  325 (354)
T ss_pred             HHHHHHHHHHHHH
Confidence            4444444444443

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.31  E-value=1.1e-10  Score=126.83  Aligned_cols=170  Identities=14%  Similarity=0.110  Sum_probs=125.9

Q ss_pred             HHHHHHHhhhhhhhhHHHHHHHH-HHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHH
Q 008137           33 SAGIGGLLFGYDTGVISGALLYI-KEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFIGA  111 (576)
Q Consensus        33 ~~~l~~~~~~~~~~~~~~~~~~i-~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~  111 (576)
                      .+++..++...........+|.+ .+++|.+..+.   ++..+...++..++.+++|+++||+|||+.+.....+..++.
T Consensus       262 ~~~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a---~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~  338 (467)
T PRK09556        262 LLCFANIFLYIVRIGIDNWSPVYAFQELGFSKEDA---INTFTLFEIGALVGSLLWGWLSDLANGRRALVACIALALIIF  338 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence            34444444444444555666754 46688888887   889999999999999999999999999987766554444433


Q ss_pred             H--HHHhcchHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHH-HHHHHHHHHHHhcC-------
Q 008137          112 I--IMAIAPQPWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITG-GQFLAYLINLAFTK-------  181 (576)
Q Consensus       112 ~--~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~-G~~l~~~l~~~l~~-------  181 (576)
                      .  .....++.+.+.+.+++.|++..+..........|.+|++.||.+.|+.+....+ |.+++|.+.|.+.+       
T Consensus       339 ~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~  418 (467)
T PRK09556        339 TLGVYQHATSEYMYLASLFALGFLVFGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTP  418 (467)
T ss_pred             HHHHHHhcCcHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhcccccccc
Confidence            2  2334456777778888888755444444446677999999999999999988886 77999999999988       


Q ss_pred             -----CCchhHHHHHHhHHHHHHHHHHHhh
Q 008137          182 -----APGTWRWMLGVAGLPAVVQFGLMMM  206 (576)
Q Consensus       182 -----~~~~Wr~~f~v~~~~~~~~~~~~~~  206 (576)
                           ..+ |+..|++.++..++..+..++
T Consensus       419 ~~~~~~~~-~~~~f~~~~~~~~~~~~~~~~  447 (467)
T PRK09556        419 IFGYTLTG-WAGTFAALDIAAIGCICLMAI  447 (467)
T ss_pred             cccccccC-hHHHHHHHHHHHHHHHHHHHH
Confidence                 344 999999887777766555443

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.31  E-value=2.1e-11  Score=132.11  Aligned_cols=161  Identities=14%  Similarity=0.031  Sum_probs=130.2

Q ss_pred             HhhhhhhhhHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhcc--CchHHHHH--HHHHHHHHHHHH
Q 008137           39 LLFGYDTGVISGALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRF--GRKISLLG--ADVLFFIGAIIM  114 (576)
Q Consensus        39 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~--Grr~~~~~--~~~~~~i~~~~~  114 (576)
                      ++...........+|.+.++++.+..+.   +++.++..++..+++++.|+++||.  ++|+...+  +.++.+++.+++
T Consensus       251 ~l~~~~~~~~~~~l~~~~~~~g~s~~~~---g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~  327 (455)
T TIGR00892       251 VIMFLGFFAPIIFLVPYAKDKGVDEYEA---AFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLC  327 (455)
T ss_pred             HHHHHHccchHHHHHHHHHHcCCCHHHH---HHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHH
Confidence            3333444444456677778888887777   9999999999999999999999984  34443333  334445555667


Q ss_pred             HhcchHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHhH
Q 008137          115 AIAPQPWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFTKAPGTWRWMLGVAG  194 (576)
Q Consensus       115 ~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~Wr~~f~v~~  194 (576)
                      .+.++++.+++.+++.|++.+...+...+++.|.+|+++|++++++++....+|.++||.+++.+.+..++|++.|++.+
T Consensus       328 ~~~~~~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~  407 (455)
T TIGR00892       328 ALAGDYTGLVIYCIFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYASG  407 (455)
T ss_pred             HHhchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhcCCcchHHHHhh
Confidence            77889999999999999999999999999999999999999999999999999999999999999887766999999988


Q ss_pred             HHHHHHHH
Q 008137          195 LPAVVQFG  202 (576)
Q Consensus       195 ~~~~~~~~  202 (576)
                      ++.++..+
T Consensus       408 ~~~li~~~  415 (455)
T TIGR00892       408 SIVVSAGL  415 (455)
T ss_pred             HHHHHHHH
Confidence            87665544

>PRK03545 putative arabinose transporter; Provisional

Probab=99.31  E-value=2.2e-10  Score=121.38  Aligned_cols=149  Identities=13%  Similarity=0.151  Sum_probs=120.8

Q ss_pred             HHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHH-HHHHhcchHHHHHHHHHHH
Q 008137           52 LLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFIGA-IIMAIAPQPWVIILGRIFV  130 (576)
Q Consensus        52 ~~~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~-~~~~~~~~~~~l~~~R~l~  130 (576)
                      .|.+.+.+|.+..+.   +++.+...++..+++++.|++.||+|||.... +..+..++. .+..+.++.+.+++..++.
T Consensus       229 ~~~l~~~~g~s~~~~---~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~l~  304 (390)
T PRK03545        229 EPFVQQVAGLSENFA---TLLLLLFGGAGIIGSVLFSRLGNRHPSGFLLI-AIALLLVCLLLLLPAANSEWHLSVLSIFW  304 (390)
T ss_pred             HHHHHHhcCCCccHH---HHHHHHHHHHHHHHHHHHHHHhhccchhHHHH-HHHHHHHHHHHHHHHhchHHHHHHHHHHH
Confidence            344555578777777   88999999999999999999999999887544 444444443 3445567888888899999


Q ss_pred             HhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHhHHHHHHHHHHHhh
Q 008137          131 GLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFTKAPGTWRWMLGVAGLPAVVQFGLMMM  206 (576)
Q Consensus       131 G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~Wr~~f~v~~~~~~~~~~~~~~  206 (576)
                      |++.+...+.....+.+..| ++|++++++++....+|..+|++++|.+.+..+ ++..|++.+++.++.++....
T Consensus       305 g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~g-~~~~~~~~~~~~~~~~~~~~~  378 (390)
T PRK03545        305 GIAIMCIGLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGNQVSLHLG-LSSIGYVGAALALAALVWSIL  378 (390)
T ss_pred             HHHHhcchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-hhHHHHHHHHHHHHHHHHHHH
Confidence            99988777777888888876 588999999999999999999999999999887 999999998888776665433

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.29  E-value=5.3e-11  Score=128.15  Aligned_cols=177  Identities=11%  Similarity=0.028  Sum_probs=130.5

Q ss_pred             HHHHHHHHHHHHHhhHHHHhhhHHHHHhhcCCchhHHHHHHHHHhHHHHHHHHHHHHhhcccCChHHHHHHHHHHHHHHH
Q 008137          279 YAGVTVQVAQQFVGINTVMYYSPTIVQFAGFASKSTALALSLVTSGLNALGSIVSMAFVDKYGRRRLMIVSMFGLSSCLV  358 (576)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dk~grr~~~~~~~~~~~~~~~  358 (576)
                      +...++..+..+........+.|.+.++.+. +..+.+.+.....++..++.++.|++.||+|||+++..+.++..++.+
T Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~  103 (434)
T PRK11663         25 LITMYLGYALFYFTRKSFNAAMPEMLADLGL-SRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATGIINI  103 (434)
T ss_pred             HHHHHHHHHHHHHhhhhHHHhhHHHHHhcCC-CHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHHHHHH
Confidence            3334444444444444566778888888777 677788888888999999999999999999999999988888888877


Q ss_pred             HHHHHHHHhhhcCCCccccccccCCCCCCCCcccccCCCCcccccccccccccccCCCCCCCCCCccccccccccccccc
Q 008137          359 ALAVVFFQAAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAHKGNEYLPGACLIDEKSTDTLCSD  438 (576)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  438 (576)
                      +.......                                                                        
T Consensus       104 ~~~~~~~~------------------------------------------------------------------------  111 (434)
T PRK11663        104 LFGFSSSL------------------------------------------------------------------------  111 (434)
T ss_pred             HHHHHhHH------------------------------------------------------------------------
Confidence            66554221                                                                        


Q ss_pred             ccccccccCCCCcchhHHHHHHHHHHHHhcCCcccccchhccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 008137          439 EHRTYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEIYPLRYRGVGGGIAAVSNWTSNLIVSLTFLTLTEALG  518 (576)
Q Consensus       439 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~g~~~~~~~~~~l~~~~g  518 (576)
                                     +...+...+.+.+.+.. .+....+..|.+|+++|++++|+.+....+|..+++.+.+.+.+..|
T Consensus       112 ---------------~~l~~~~~l~g~~~g~~-~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~g  175 (434)
T PRK11663        112 ---------------WAFALLWVLNAFFQGWG-WPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALHYG  175 (434)
T ss_pred             ---------------HHHHHHHHHHHHHHHcc-chHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence                           22222223333333322 34455778899999999999999999999999999999999999999


Q ss_pred             cchhhHHHHHHHHHHHHHHHhhccCC
Q 008137          519 SAGTFLLFAGFSLLGLVAIYLLVPET  544 (576)
Q Consensus       519 ~~~~~~~~~~~~~i~~~~~~~~~~~~  544 (576)
                      |+..|++.+++.++..++..++++|+
T Consensus       176 w~~~f~~~~i~~~~~~~~~~~~~~~~  201 (434)
T PRK11663        176 WRYGMMIAGIIAIVVGLFLCWRLRDK  201 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            99999888877766555555556654

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.28  E-value=2e-10  Score=121.30  Aligned_cols=154  Identities=14%  Similarity=0.097  Sum_probs=126.5

Q ss_pred             hHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHhcchHHHHHHH
Q 008137           47 VISGALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFIGAIIMAIAPQPWVIILG  126 (576)
Q Consensus        47 ~~~~~~~~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~  126 (576)
                      .....+|.+.++.+.+....   +++.+...++..+++++.|++.||+|+|+.+..+..+..++.+...  + ...+...
T Consensus       218 ~~~~~lp~~~~~~g~s~~~~---g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~--~-~~~~~~~  291 (381)
T PRK03633        218 SLYGLMPLYLNHQGMSDASI---GFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAML--S-QAAMAPA  291 (381)
T ss_pred             HHHHHHHHHHHHcCCCHHHH---HHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHh--h-hHHHHHH
Confidence            33445777777778777776   8899999999999999999999999999999888888777665443  2 2344557


Q ss_pred             HHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHhHHHHHHHHHHHhh
Q 008137          127 RIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFTKAPGTWRWMLGVAGLPAVVQFGLMMM  206 (576)
Q Consensus       127 R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~Wr~~f~v~~~~~~~~~~~~~~  206 (576)
                      +++.|++.+...|.....+.|..|+++++.+.+.++...++|..+||.++|.+.+..+ |++.|.+.+.+.++..+.++.
T Consensus       292 ~~l~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~g-~~~~f~~~~~~~l~~~~~~~~  370 (381)
T PRK03633        292 LFILGAAGFTLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQNYS-DNLLFIMIASVSFIYLLMLLR  370 (381)
T ss_pred             HHHHHHHHHhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHHHHHh
Confidence            7888988888889999999999998888888888888999999999999999988877 999999988888766655544


Q ss_pred             c
Q 008137          207 L  207 (576)
Q Consensus       207 l  207 (576)
                      .
T Consensus       371 ~  371 (381)
T PRK03633        371 K  371 (381)
T ss_pred             c
Confidence            3

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.28  E-value=1.1e-10  Score=124.86  Aligned_cols=180  Identities=12%  Similarity=-0.015  Sum_probs=134.2

Q ss_pred             hHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcCCchhHHHHHHHHHhHHHHHHHHHHHHhhcccCChHHHHHHHHHHHHHH
Q 008137          278 LYAGVTVQVAQQFVGINTVMYYSPTIVQFAGFASKSTALALSLVTSGLNALGSIVSMAFVDKYGRRRLMIVSMFGLSSCL  357 (576)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dk~grr~~~~~~~~~~~~~~  357 (576)
                      .+....+.+..++.......+..|.+.++.+. +..+.++......++..++.+..|++.||+|||+++..+.++..++.
T Consensus         9 ~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~-s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~   87 (412)
T TIGR02332         9 LIIFLFILFIFSFLDRINIGFAGLTMGKDLGL-SATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLWGIAS   87 (412)
T ss_pred             HHHHHHHHHHHHHhhhhhHHHHHHhhHhhcCC-CHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHHHHHH
Confidence            44445555555555556666677766666655 77888888889999999999999999999999999998888888877


Q ss_pred             HHHHHHHHHhhhcCCCccccccccCCCCCCCCcccccCCCCcccccccccccccccCCCCCCCCCCcccccccccccccc
Q 008137          358 VALAVVFFQAAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAHKGNEYLPGACLIDEKSTDTLCS  437 (576)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  437 (576)
                      ++..+...                                                                        
T Consensus        88 ~~~~~~~~------------------------------------------------------------------------   95 (412)
T TIGR02332        88 TATMFATG------------------------------------------------------------------------   95 (412)
T ss_pred             HHHHHhcC------------------------------------------------------------------------
Confidence            77665421                                                                        


Q ss_pred             cccccccccCCCCcchhHHHHHHHHHHHHhcCCcccccchhccccccccccccchhHHHHHHHHHHHHHHHHHHHHHH--
Q 008137          438 DEHRTYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEIYPLRYRGVGGGIAAVSNWTSNLIVSLTFLTLTE--  515 (576)
Q Consensus       438 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~g~~~~~~~~~~l~~--  515 (576)
                                     .+..++.-.+.+.+.+ +..+....+..|.+|++.|++++|+.+....+|..+++.+.+.+.+  
T Consensus        96 ---------------~~~l~~~r~l~G~~~~-~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~  159 (412)
T TIGR02332        96 ---------------PESLYLLRILVGIAEA-GFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALD  159 (412)
T ss_pred             ---------------HHHHHHHHHHHHHHHh-hHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence                           1222333333333333 2345555678999999999999999999999999999999998875  


Q ss_pred             ----hhccchhhHHHHHHHHHHHHHHHhhccCCCC
Q 008137          516 ----ALGSAGTFLLFAGFSLLGLVAIYLLVPETKG  546 (576)
Q Consensus       516 ----~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~  546 (576)
                          ..||+..|++.++..++..++.++++||+++
T Consensus       160 ~~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~  194 (412)
T TIGR02332       160 GLMALKGWQWLFLLEGFPSVILGVMTWFWLDDSPD  194 (412)
T ss_pred             CCCCccchhHHHHHHHHHHHHHHHHHhhccCCCcc
Confidence                3589999999888887777777777888764

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.28  E-value=6.7e-11  Score=121.49  Aligned_cols=182  Identities=13%  Similarity=0.070  Sum_probs=148.1

Q ss_pred             hhhhhHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcCCchhHHHHHHHHHhHHHHHHHHHHHHhhcccCChHHHHHHHHHH
Q 008137          274 VRRGLYAGVTVQVAQQFVGINTVMYYSPTIVQFAGFASKSTALALSLVTSGLNALGSIVSMAFVDKYGRRRLMIVSMFGL  353 (576)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dk~grr~~~~~~~~~~  353 (576)
                      +|..++..+.+.....+..--.+..-.|.+.++.+. +..+.+.+.+..++..-++-++.|.++||.+.|+.+..+.++.
T Consensus        26 ~r~qif~~~fiGYa~fYl~RknF~~a~p~l~e~~~l-sk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~gLils  104 (448)
T COG2271          26 WRIQIFLSIFIGYAAFYLTRKNFNLAMPALIEDGGL-SKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLILS  104 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHhhccHHHHHhcCC-CHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeehHHHHHH
Confidence            355566666666666666666777788888887775 8999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhhcCCCccccccccCCCCCCCCcccccCCCCcccccccccccccccCCCCCCCCCCcccccccccc
Q 008137          354 SSCLVALAVVFFQAAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAHKGNEYLPGACLIDEKSTD  433 (576)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  433 (576)
                      +++.+++++....                                                                   
T Consensus       105 ai~nil~Gfs~s~-------------------------------------------------------------------  117 (448)
T COG2271         105 AIVNILFGFSPSL-------------------------------------------------------------------  117 (448)
T ss_pred             HHHHHHHhhhhHH-------------------------------------------------------------------
Confidence            9999999887531                                                                   


Q ss_pred             cccccccccccccCCCCcchhHHHHHHHHHHHHhcCCcccccchhccccccccccccchhHHHHHHHHHHHHHHHHH--H
Q 008137          434 TLCSDEHRTYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEIYPLRYRGVGGGIAAVSNWTSNLIVSLTF--L  511 (576)
Q Consensus       434 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~g~~~~~~~~--~  511 (576)
                                          +...++..+-+.+-+.+. |.....++.-+|++.||+..++-|++.++|+.+.|++.  +
T Consensus       118 --------------------~~~~~l~~lng~fQg~Gw-pp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la  176 (448)
T COG2271         118 --------------------FLFAVLWVLNGWFQGMGW-PPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLA  176 (448)
T ss_pred             --------------------HHHHHHHHHHHHHhcCCC-cHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHH
Confidence                                333444444444444444 44446668899999999999999999999999999999  8


Q ss_pred             HHHHhhccchhhHHHHHHHHHHHHHHHhhccCC
Q 008137          512 TLTEALGSAGTFLLFAGFSLLGLVAIYLLVPET  544 (576)
Q Consensus       512 ~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~  544 (576)
                      .+..+.+|+..|++.++++++..++.++..+++
T Consensus       177 ~~~~~~~w~~~f~~pgiiaiival~~~~~~rd~  209 (448)
T COG2271         177 FFAFHGGWRAAFYFPGIIAIIVALILLFLLRDR  209 (448)
T ss_pred             HHHhccchhHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            999999999999999999999888887777654

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.27  E-value=4.3e-11  Score=125.67  Aligned_cols=158  Identities=17%  Similarity=0.090  Sum_probs=122.2

Q ss_pred             HHhhhhhhhhHHHHHHHHH-HhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHH--HHH
Q 008137           38 GLLFGYDTGVISGALLYIK-EDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFIGA--IIM  114 (576)
Q Consensus        38 ~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~--~~~  114 (576)
                      .+.............|.+. ++++.+..+.   +.+.+...++..++.++.|+++||+|||+.+..+..+..+..  ++.
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~  304 (394)
T TIGR00883       228 VIATTTTFYLITTYLPTYLTQTLGLSANSA---LLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLM  304 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCChhHH---HHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHH
Confidence            3444444455556667765 6677777776   888999999999999999999999999998776555444333  222


Q ss_pred             Hh--cchHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHH-HHHHHHHHHHHHHHHHHHhcCCCchhHHHHH
Q 008137          115 AI--APQPWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSA-NGFLITGGQFLAYLINLAFTKAPGTWRWMLG  191 (576)
Q Consensus       115 ~~--~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~-~~~~~~~G~~l~~~l~~~l~~~~~~Wr~~f~  191 (576)
                      .+  .++.+.+.+..++.|++.+...+...+++.|.+|+++|+++.++ ++....+|..++|.+++.+.+..+.|++.++
T Consensus       305 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g~~~~~~~  384 (394)
T TIGR00883       305 ALLDSGSFTLFFFLVLGLALIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTGDWYAIGY  384 (394)
T ss_pred             HHhcCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHcCcchhHHH
Confidence            22  25677777888999999999999999999999999999999997 4566778999999999999887766888877


Q ss_pred             HhHHHHH
Q 008137          192 VAGLPAV  198 (576)
Q Consensus       192 v~~~~~~  198 (576)
                      ...+..+
T Consensus       385 ~~~~~~l  391 (394)
T TIGR00883       385 YLAALAL  391 (394)
T ss_pred             HHHHHHH
Confidence            7666544

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>PRK10054 putative transporter; Provisional

Probab=99.27  E-value=1.3e-10  Score=123.64  Aligned_cols=175  Identities=14%  Similarity=0.031  Sum_probs=127.7

Q ss_pred             HHHHHHHHHHhhHHHHhhhHHHHHhhcCCchhHHHHHHHHHhHHHHHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHHH
Q 008137          282 VTVQVAQQFVGINTVMYYSPTIVQFAGFASKSTALALSLVTSGLNALGSIVSMAFVDKYGRRRLMIVSMFGLSSCLVALA  361 (576)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dk~grr~~~~~~~~~~~~~~~~~~  361 (576)
                      +....+....+......+.|.++++..+.+..+.++......+..+++.++.|+++||+|||+++..+.++..++.+++.
T Consensus        12 l~~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~   91 (395)
T PRK10054         12 LLASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAIP   91 (395)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHH
Confidence            33444445556667777778877665444788888888888888999999999999999999999888887777766555


Q ss_pred             HHHHHhhhcCCCccccccccCCCCCCCCcccccCCCCcccccccccccccccCCCCCCCCCCcccccccccccccccccc
Q 008137          362 VVFFQAAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAHKGNEYLPGACLIDEKSTDTLCSDEHR  441 (576)
Q Consensus       362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  441 (576)
                      +....                                                                           
T Consensus        92 ~~~~~---------------------------------------------------------------------------   96 (395)
T PRK10054         92 LVNNV---------------------------------------------------------------------------   96 (395)
T ss_pred             HHhHH---------------------------------------------------------------------------
Confidence            44221                                                                           


Q ss_pred             cccccCCCCcchhHHHHHHHHHHHHhcCCcccccchhccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHhhccch
Q 008137          442 TYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEIYPLRYRGVGGGIAAVSNWTSNLIVSLTFLTLTEALGSAG  521 (576)
Q Consensus       442 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~g~~~~~~~~~~l~~~~g~~~  521 (576)
                                  +..++...+...... ...+....+..|..|++.|+++.|+.+....+|.+++|.+.+.+.+ .+++.
T Consensus        97 ------------~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~-~g~~~  162 (395)
T PRK10054         97 ------------TLVVLFFALINCAYS-VFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVM-QSINL  162 (395)
T ss_pred             ------------HHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccCc
Confidence                        222222222222222 2344556777899999999999999999999999999999998875 68888


Q ss_pred             hhHHHHHHHHHHHHHHHhhccCCC
Q 008137          522 TFLLFAGFSLLGLVAIYLLVPETK  545 (576)
Q Consensus       522 ~~~~~~~~~~i~~~~~~~~~~~~~  545 (576)
                      +|++.+++.++..+...++.|+.+
T Consensus       163 ~f~~~~~~~~i~~i~~~~~~~~~~  186 (395)
T PRK10054        163 PFWLAAICSAFPLVFIQIWVQRSE  186 (395)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccc
Confidence            999888887777666555565543

>TIGR00897 2A0118 polyol permease family

Probab=99.27  E-value=4.9e-10  Score=119.34  Aligned_cols=164  Identities=15%  Similarity=-0.010  Sum_probs=124.9

Q ss_pred             HHhhhhhhhhHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHH-HHHHHHHHHHHHHHh
Q 008137           38 GLLFGYDTGVISGALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLL-GADVLFFIGAIIMAI  116 (576)
Q Consensus        38 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~-~~~~~~~i~~~~~~~  116 (576)
                      .++............|.+.++++.+..+.   +++.+...++..++.++.|++.||+|||+.+. .+.+..+++.+...+
T Consensus       231 ~~~~~~~~~~~~~~~p~~~~~~g~s~~~~---~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~  307 (402)
T TIGR00897       231 RIINTIGLFGFAVFLPMFVAELGFSTSEW---LQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYY  307 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCChhHH---HHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHH
Confidence            33344444555667788888888887776   88888899999999999999999999988664 333334443333322


Q ss_pred             -----cchHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHH
Q 008137          117 -----APQPWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFTKAPGTWRWMLG  191 (576)
Q Consensus       117 -----~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~Wr~~f~  191 (576)
                           .++.+.+.+..++.|++.+...+ ....+.|..| ++|+++.|+.+....+|..++|.+.+.+.+..+ |+..|+
T Consensus       308 ~~~~~~~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~~~~-~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~g-~~~~~~  384 (402)
T TIGR00897       308 IPQHFGHSFAVALIIAIALGIFLAGYVP-LAAVFPTLAP-KHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFFG-AIGVVW  384 (402)
T ss_pred             HHHccCCcHHHHHHHHHHHHHHHHHHHH-HHHHHHhhCc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-hHHHHH
Confidence                 34677778889999998887655 4456677654 689999999999999999999999999998877 999999


Q ss_pred             HhHHHHHHHHHHHhhc
Q 008137          192 VAGLPAVVQFGLMMML  207 (576)
Q Consensus       192 v~~~~~~~~~~~~~~l  207 (576)
                      +.+++.++..+...++
T Consensus       385 ~~a~~~~i~~~~~~~~  400 (402)
T TIGR00897       385 IFAALYVVSAFLTAFI  400 (402)
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            9888877766665443

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PRK09952 shikimate transporter; Provisional

Probab=99.26  E-value=4.6e-10  Score=121.03  Aligned_cols=160  Identities=13%  Similarity=0.132  Sum_probs=117.0

Q ss_pred             HHHHHHH-HHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHh---c-chHHH
Q 008137           48 ISGALLY-IKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFIGAIIMAI---A-PQPWV  122 (576)
Q Consensus        48 ~~~~~~~-i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~---~-~~~~~  122 (576)
                      .....|. +.++++.+....   ..+..+..+...++.++.|+++||+|||+.+..+.++..++.+....   . ++.+.
T Consensus       269 ~~~~~~~y~~~~~g~s~~~~---~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  345 (438)
T PRK09952        269 VTAFALNYSTQNLGLPRELF---LNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALEAQSIFWI  345 (438)
T ss_pred             HHHHHHHHHHHhcCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHcCChHHH
Confidence            3344444 456677766544   44555556677888899999999999999988887766555433322   2 23445


Q ss_pred             HHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHH-HHHHHHHHHHHHHHHHhcCCC-chhHHHHHHhHHHHHHH
Q 008137          123 IILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANG-FLITGGQFLAYLINLAFTKAP-GTWRWMLGVAGLPAVVQ  200 (576)
Q Consensus       123 l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~-~~~~~G~~l~~~l~~~l~~~~-~~Wr~~f~v~~~~~~~~  200 (576)
                      +++..++.|++.+...+...+++.|.+|++.|+.+.++.+ .+..+|..++|.+.+++.+.. ++|+..+...++..++.
T Consensus       346 ~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~  425 (438)
T PRK09952        346 VFFSIMLANIAHDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLIS  425 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHH
Confidence            5556677788888888888999999999999988888854 445589999999999987743 35999888888888777


Q ss_pred             HHHHhhccCC
Q 008137          201 FGLMMMLPES  210 (576)
Q Consensus       201 ~~~~~~l~es  210 (576)
                      .+..+.++|+
T Consensus       426 ~v~~~~~~~~  435 (438)
T PRK09952        426 AMTALLMKDN  435 (438)
T ss_pred             HHHHHHcccc
Confidence            7776666664

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.25  E-value=4.6e-10  Score=117.53  Aligned_cols=167  Identities=16%  Similarity=0.123  Sum_probs=121.2

Q ss_pred             HHHHHHhhhhhhhhHHHHHHHHH-HhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchH--HH------HHHH
Q 008137           34 AGIGGLLFGYDTGVISGALLYIK-EDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKI--SL------LGAD  104 (576)
Q Consensus        34 ~~l~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~--~~------~~~~  104 (576)
                      ..+..++.......+....|.+. ++++.+..+.   +++.+...++..++.++.|++.||+|||+  ..      ..+.
T Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  296 (399)
T TIGR00893       220 LALGQFLVNIGLGFFLTWFPTYLVQERGLSILEA---GFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAG  296 (399)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHhcccHHHh---hHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHH
Confidence            34444555555556666667655 5577777777   89999999999999999999999999995  11      1111


Q ss_pred             HHHHHHHHHHHhcchHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Q 008137          105 VLFFIGAIIMAIAPQPWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFTKAPG  184 (576)
Q Consensus       105 ~~~~i~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~  184 (576)
                      ++..+........++.+......++.+.+.+ ..+...+++.|.+|+++|++++++.+....+|..+++.+.+.+.+..+
T Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~g  375 (399)
T TIGR00893       297 LVLSLLMFATNYVNIPYAALALVALGFFGLG-AGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAATTG  375 (399)
T ss_pred             HHHHHHHHHhccchhHHHHHHHHHHHHhchh-hhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccCCC
Confidence            1112222222223345555555555555555 788999999999999999999999999999999999999999998776


Q ss_pred             hhHHHHHHhHHHHHHHHHHH
Q 008137          185 TWRWMLGVAGLPAVVQFGLM  204 (576)
Q Consensus       185 ~Wr~~f~v~~~~~~~~~~~~  204 (576)
                      +|++.|++.++..++..+..
T Consensus       376 ~~~~~~~~~~~~~~~~~~~~  395 (399)
T TIGR00893       376 SFAGALMVVAALALIGALSY  395 (399)
T ss_pred             chhHHHHHHHHHHHHHHHHH
Confidence            69999998888777665554

>PRK03699 putative transporter; Provisional

Probab=99.25  E-value=1.7e-10  Score=122.54  Aligned_cols=170  Identities=15%  Similarity=0.026  Sum_probs=136.7

Q ss_pred             HHHHhhhhhhhhHHHHHHHHH-HhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHH
Q 008137           36 IGGLLFGYDTGVISGALLYIK-EDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFIGAIIM  114 (576)
Q Consensus        36 l~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~  114 (576)
                      ++.++.......+....|.+. ++++.+..+.   +++.+.+.++..++.++.|++.||+|||+.+.....+..+...+.
T Consensus       212 ~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~---~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~  288 (394)
T PRK03699        212 IAALLYILAQLTFISWVPEYAQKKFGMSLEDA---GNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVLMYLF  288 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCCChHHh---hHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHH
Confidence            333333334444555677766 5678888777   999999999999999999999999999999988888777777777


Q ss_pred             HhcchHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHhH
Q 008137          115 AIAPQPWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFTKAPGTWRWMLGVAG  194 (576)
Q Consensus       115 ~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~Wr~~f~v~~  194 (576)
                      ...++.+.+.+..++.|++.+..++...++..|..| +++++..+.......+|..++|.+.+.+.+..+ |+..+++.+
T Consensus       289 ~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~p~~~G~l~~~~g-~~~~~~~~~  366 (394)
T PRK03699        289 VNTDDPSHLLYAILGLGFFSSAIYTTIITLGSQQTK-VASPKLVNFILTCGTIGTMLTFVVTSPIVAHFG-LQAALLTAN  366 (394)
T ss_pred             HHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-CCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHhC-chhhhhhhH
Confidence            777888778888899999888888888888888776 446778888888899999999999999998877 999999988


Q ss_pred             HHHHHHHHHHhhccCC
Q 008137          195 LPAVVQFGLMMMLPES  210 (576)
Q Consensus       195 ~~~~~~~~~~~~l~es  210 (576)
                      ++.++..+....+++.
T Consensus       367 ~~~~~~~~~~~~~~~~  382 (394)
T PRK03699        367 GLYAVVFVMCILLGFV  382 (394)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            8877776665555443

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.25  E-value=1.1e-10  Score=125.81  Aligned_cols=180  Identities=17%  Similarity=0.052  Sum_probs=133.8

Q ss_pred             HHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHH
Q 008137           28 MKLALSAGIGGLLFGYDTGVISGALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLF  107 (576)
Q Consensus        28 ~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~  107 (576)
                      +..+....+..+........+....|.+.++++.+..+.   ++......++..++.++.|+++||+|||+.+.++.++.
T Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~  359 (481)
T TIGR00879       283 RRLFLGVVLQWFQQFTGINAIMYYSPTIFENAGVSTDHA---FLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGM  359 (481)
T ss_pred             HHHHHHHHHHHHHHHhCCeehHHHHHHHHHHcCCCchHH---HHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence            334444444444444444555666788888888877666   88889999999999999999999999999999998888


Q ss_pred             HHHHHHHHh-----cc------hHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHH
Q 008137          108 FIGAIIMAI-----AP------QPWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLIN  176 (576)
Q Consensus       108 ~i~~~~~~~-----~~------~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~  176 (576)
                      .++.++.++     .+      +...+....++.+....+..+....++.|.+|+++|++++++.+....+|.++++.+.
T Consensus       360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~  439 (481)
T TIGR00879       360 AICLFVLGILGASFVTGSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLF  439 (481)
T ss_pred             HHHHHHHHHHhhcccCCcccchhHHHHHHHHHHHHHHHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            887777662     11      2333333333333333334466677889999999999999999999999999999999


Q ss_pred             HHhcCCCchhHHHHHHhHHHHHHHHHHH-hhccCCh
Q 008137          177 LAFTKAPGTWRWMLGVAGLPAVVQFGLM-MMLPESP  211 (576)
Q Consensus       177 ~~l~~~~~~Wr~~f~v~~~~~~~~~~~~-~~l~esp  211 (576)
                      +.+.+..+ |++.|++.++++++..+.. ++.||++
T Consensus       440 ~~~~~~~~-~~~~f~~~~~~~~~~~i~~~~~~~~~~  474 (481)
T TIGR00879       440 PTMLESIG-VGGVFIFFGGLNVLGLIFVYFFLPETK  474 (481)
T ss_pred             HHHHHhcC-ccceehhHHHHHHHHHHHHheecccCC
Confidence            99887766 9999999888877776664 4456653

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.25  E-value=5.1e-10  Score=118.36  Aligned_cols=151  Identities=13%  Similarity=0.046  Sum_probs=125.9

Q ss_pred             HHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHhcchHHHHHHHH
Q 008137           48 ISGALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFIGAIIMAIAPQPWVIILGR  127 (576)
Q Consensus        48 ~~~~~~~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~R  127 (576)
                      .....|.+.++.|.+..+.   |.+.+...++..+..++.|++.||+|+|+.+.++.++.+++.++.+++++++.+++..
T Consensus       224 ~~~~~~~~~~~~g~s~~~~---g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (382)
T PRK11128        224 YYGFSAIYWQAAGYSASTI---GYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGSTTALPWLIVIQ  300 (382)
T ss_pred             HHHHHHHHHHHCCCCHhHH---HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence            3344556667788877776   8899999999999999999999999999999999999999888888899999999999


Q ss_pred             HHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHH-HHHHHHHHHHHHHHHHhcCCCchhHHHHHHhHHHHHHHHHHH
Q 008137          128 IFVGLGVGMASMTAPLYISEASPAKIRGALVSANG-FLITGGQFLAYLINLAFTKAPGTWRWMLGVAGLPAVVQFGLM  204 (576)
Q Consensus       128 ~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~-~~~~~G~~l~~~l~~~l~~~~~~Wr~~f~v~~~~~~~~~~~~  204 (576)
                      ++.|++.+...+....++.+. ++++++++++.++ ...++|..+|+.++|.+.+..+ + ..|+..++++++.+...
T Consensus       301 ~l~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g-~-~~~~~~~~~~~~~~~~~  375 (382)
T PRK11128        301 ILHCGTFTVCHLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHLG-A-GVFWVMALVALPALFIR  375 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-H-HHHHHHHHHHHHHHHHH
Confidence            999999999999999999887 5666788899886 5567888999999999999877 6 46666666665554443

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.24  E-value=1.7e-10  Score=121.29  Aligned_cols=172  Identities=17%  Similarity=0.066  Sum_probs=128.7

Q ss_pred             HHHHHhhHHHHhhhHHHHHhhcCCchhHHHHHHHHHhHHHHHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHHHHHHHH
Q 008137          287 AQQFVGINTVMYYSPTIVQFAGFASKSTALALSLVTSGLNALGSIVSMAFVDKYGRRRLMIVSMFGLSSCLVALAVVFFQ  366 (576)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dk~grr~~~~~~~~~~~~~~~~~~~~~~~  366 (576)
                      .....+........|.+.++.+. +..+.+.......++..++.++.|+++||+|||+.+..+.++..++.++...... 
T Consensus        15 ~~~~~~~~~~~~~~p~~~~~~g~-s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~-   92 (385)
T TIGR00710        15 ILGPLGIDMYLPAFPEIAADLST-PASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALSNN-   92 (385)
T ss_pred             HHHHHHHHHhcccHHHHHHHhCC-CHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHcc-
Confidence            33344445555566777777776 6777888888889999999999999999999999999888887777766554311 


Q ss_pred             hhhcCCCccccccccCCCCCCCCcccccCCCCcccccccccccccccCCCCCCCCCCccccccccccccccccccccccc
Q 008137          367 AAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAHKGNEYLPGACLIDEKSTDTLCSDEHRTYFIS  446 (576)
Q Consensus       367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  446 (576)
                                                                                                      
T Consensus        93 --------------------------------------------------------------------------------   92 (385)
T TIGR00710        93 --------------------------------------------------------------------------------   92 (385)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCcchhHHHHHHHHHHHHhcCCcccccchhccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHH
Q 008137          447 GCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEIYPLRYRGVGGGIAAVSNWTSNLIVSLTFLTLTEALGSAGTFLLF  526 (576)
Q Consensus       447 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~  526 (576)
                            .+...+...+.+.+.+ ...+....+..|.+|++.|++..|+.+....+|..+++.+.+.+.+..+|+..+++.
T Consensus        93 ------~~~~~~~~~l~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~  165 (385)
T TIGR00710        93 ------IETLLVLRFVQAFGAS-AGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAFL  165 (385)
T ss_pred             ------HHHHHHHHHHHHcchh-HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHH
Confidence                  1222333333322222 223455678899999999999999999999999999999999999999999999988


Q ss_pred             HHHHHHHHHHHHhhccCCCCC
Q 008137          527 AGFSLLGLVAIYLLVPETKGL  547 (576)
Q Consensus       527 ~~~~~i~~~~~~~~~~~~~~~  547 (576)
                      +++.++..+..++..||++.+
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~  186 (385)
T TIGR00710       166 SLAGILLSALIFFILPETLPY  186 (385)
T ss_pred             HHHHHHHHHHHHHhCCCCCCC
Confidence            888887777766667776543

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.24  E-value=3e-10  Score=120.68  Aligned_cols=164  Identities=18%  Similarity=0.066  Sum_probs=128.5

Q ss_pred             hhhhhHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHhcc-hHH
Q 008137           43 YDTGVISGALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFIGAIIMAIAP-QPW  121 (576)
Q Consensus        43 ~~~~~~~~~~~~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~-~~~  121 (576)
                      .........+|.+.++++.+..+.   +...+.+.++..++.++.|++.||+|||+.+.++..+..++..+....+ +..
T Consensus       219 ~~~~~~~~~lp~~l~~~g~s~~~a---g~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  295 (393)
T PRK09705        219 GGYASLIAWLPAFYIEIGASAQYS---GSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFIWLPLQLP  295 (393)
T ss_pred             HHHHHHHHHHHHHHHHcCCChhhh---hHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHccchHH
Confidence            344445556677777788887777   9999999999999999999999999999999988888777766554333 322


Q ss_pred             HHHHHHHHHHhhhhhhhhhHHHHHHhccC-cchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHhHHHHHHH
Q 008137          122 VIILGRIFVGLGVGMASMTAPLYISEASP-AKIRGALVSANGFLITGGQFLAYLINLAFTKAPGTWRWMLGVAGLPAVVQ  200 (576)
Q Consensus       122 ~l~~~R~l~G~~~g~~~~~~~~~i~e~~~-~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~Wr~~f~v~~~~~~~~  200 (576)
                      .+  .-++.|++.+...+.......+.++ +++|++..++.+....++..++|.+.+++.+..++|+..|.+..+.+++.
T Consensus       296 ~~--~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~  373 (393)
T PRK09705        296 VL--WAMVCGLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVGL  373 (393)
T ss_pred             HH--HHHHHHHhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHH
Confidence            22  2356788888888887777777775 67899999999999999999999999999998777889888877776665


Q ss_pred             HHH-HhhccCCh
Q 008137          201 FGL-MMMLPESP  211 (576)
Q Consensus       201 ~~~-~~~l~esp  211 (576)
                      .+. .++.||++
T Consensus       374 ~~~~~~~~~~~~  385 (393)
T PRK09705        374 MIITLRFAPARF  385 (393)
T ss_pred             HHHHHHhccccc
Confidence            555 55567764

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.24  E-value=8e-11  Score=122.97  Aligned_cols=165  Identities=12%  Similarity=0.052  Sum_probs=124.7

Q ss_pred             hhHHHHhhhHHHHHhhcCCchhHHHHHHHHHhHHHHHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 008137          292 GINTVMYYSPTIVQFAGFASKSTALALSLVTSGLNALGSIVSMAFVDKYGRRRLMIVSMFGLSSCLVALAVVFFQAAIHA  371 (576)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dk~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~  371 (576)
                      ....+....|.+.++.+. +..+.+.+.....++..++.++.|+++||+|||+.+..+.++..++.+++.....      
T Consensus        10 ~~~~~~~~~~~~~~~~g~-s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~------   82 (379)
T TIGR00881        10 VRKNFALAMPYLVEEIGL-SKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFSTS------   82 (379)
T ss_pred             hHHhhhhhhHHHHHHhCC-CHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHhhh------
Confidence            345556667777776666 6778888888889999999999999999999999999998888888777665422      


Q ss_pred             CCccccccccCCCCCCCCcccccCCCCcccccccccccccccCCCCCCCCCCcccccccccccccccccccccccCCCCc
Q 008137          372 PTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAHKGNEYLPGACLIDEKSTDTLCSDEHRTYFISGCPSS  451 (576)
Q Consensus       372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~  451 (576)
                                                                                                      
T Consensus        83 --------------------------------------------------------------------------------   82 (379)
T TIGR00881        83 --------------------------------------------------------------------------------   82 (379)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             chhHHHHHHHHHHHHhcCCcccccchhccccccccccccchhHHHHHHHHHHHHHH-HHHHHHHHhhccchhhHHHHHHH
Q 008137          452 FGWLAVVFLGAYIITYSPGMGTAPWIVNSEIYPLRYRGVGGGIAAVSNWTSNLIVS-LTFLTLTEALGSAGTFLLFAGFS  530 (576)
Q Consensus       452 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~g~~~~~-~~~~~l~~~~g~~~~~~~~~~~~  530 (576)
                       .+..++...+.+.+.+ ...+....+..|.+|++.|+...++.+....+|..+++ .+.+.+.+..+|+..|++.+++.
T Consensus        83 -~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (379)
T TIGR00881        83 -LWVMAALWALNGIFQG-MGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFIVPGIIA  160 (379)
T ss_pred             -HHHHHHHHHHHHhhcc-ccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHHHHHHHHH
Confidence             1333333333333332 33456667889999999999999999999999999999 46666677788988888888877


Q ss_pred             HHHHHHHHhhccCCC
Q 008137          531 LLGLVAIYLLVPETK  545 (576)
Q Consensus       531 ~i~~~~~~~~~~~~~  545 (576)
                      ++..+..+++.||++
T Consensus       161 ~~~~~~~~~~~~~~~  175 (379)
T TIGR00881       161 IIVSLICFLLLRDSP  175 (379)
T ss_pred             HHHHHHHheeeCCCc
Confidence            776666666666654

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=99.22  E-value=5.3e-09  Score=109.11  Aligned_cols=308  Identities=12%  Similarity=0.070  Sum_probs=190.4

Q ss_pred             HHHHHHHHHHhhhhhhhhHHHHHHHHHHh-hccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHH
Q 008137           30 LALSAGIGGLLFGYDTGVISGALLYIKED-FRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFF  108 (576)
Q Consensus        30 ~~~~~~l~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~  108 (576)
                      ....+|+-.|+..+.-+- ..+.|.+.+. .|.+.++..  .-+.-+..-++....++...++|..|.|++++++.+...
T Consensus         6 ~~~llc~~gf~~~frPsE-Pfl~~yL~~~~kn~T~~qv~--~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i   82 (412)
T PF01770_consen    6 ITLLLCLFGFFKEFRPSE-PFLTPYLTGPDKNFTEEQVN--NEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYI   82 (412)
T ss_pred             HHHHHHHHHHHHhcCCCC-ccchHHHcCCccCCCHHHHH--HhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence            444555555554443221 2233444443 566666653  567777788888899999999999999999999999999


Q ss_pred             HHHHHHHhcchHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCc-hhH
Q 008137          109 IGAIIMAIAPQPWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFTKAPG-TWR  187 (576)
Q Consensus       109 i~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~-~Wr  187 (576)
                      +..++.-+.++...+-+..++.|++.+. ..+-.+|+-...|+++-.++.+....+.-+|.+++.+++-.+....+ +.+
T Consensus        83 ~t~~lll~~~sv~~mq~~q~~yg~~~a~-evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~~~~sy~  161 (412)
T PF01770_consen   83 ITWLLLLFGTSVLAMQLMQFFYGLATAA-EVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSFGGVSYF  161 (412)
T ss_pred             HHHHHHHHHCcHHHHHHHHHHHHHHHHH-HHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH
Confidence            9999999999999999999999998885 66678888888898888999999999999999999999888776332 466


Q ss_pred             HHHHHhHHHHHHHHHHHhhccCChhHHhhcCCHHHHHHHHHHhCCch-hhhHHHH-HHHHHHHhhhhhhcccchhhHHHh
Q 008137          188 WMLGVAGLPAVVQFGLMMMLPESPRWLYRQNKVDEARAILEKIYPAD-QVEEEVN-LLKQSVENEKAEEGLIGKDMISRL  265 (576)
Q Consensus       188 ~~f~v~~~~~~~~~~~~~~l~esp~~l~~~~~~~~~~~~l~~i~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  265 (576)
                      ....+......+.++..+++|..++...-+++..+... ..+....+ +..++.. ...+.............+..++++
T Consensus       162 ~L~~isl~~~~~a~~~~~fLP~~~~S~~f~r~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~  240 (412)
T PF01770_consen  162 QLNYISLASVSLALLIALFLPMPKRSLFFHRKPPAEQD-ANESESDKMNESPESSSSTEKSPSTESSSRKSVLRLLWKDF  240 (412)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCCCcccceeccCccccc-cccccccccccccccccccccCcccccchHHHHHHHHHHHH
Confidence            67666666556666666778776543222211111000 00000000 0000000 000000000001111122445667


Q ss_pred             hhhcccchhhhhhHHHHHHHHHHHHHhhHHHHhhhHHHHHhh--cCCchhHHHHHHHHHhHHHHHHHHHHHHhhcccCCh
Q 008137          266 KGAFGNKIVRRGLYAGVTVQVAQQFVGINTVMYYSPTIVQFA--GFASKSTALALSLVTSGLNALGSIVSMAFVDKYGRR  343 (576)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dk~grr  343 (576)
                      ++..+++..+...++..+     ...++..+..|...+.++.  .......-|..-....+.+.++++..|++..+..+.
T Consensus       241 ~~~y~~~~ll~WSlWWa~-----atcgy~qv~nYvQ~LW~~v~~~~~~~vYNG~VeA~~tllgA~~al~~g~v~~~w~~~  315 (412)
T PF01770_consen  241 KSCYSNPRLLLWSLWWAF-----ATCGYYQVINYVQSLWDTVPPSDNESVYNGAVEAASTLLGAIAALLAGYVKVNWDRW  315 (412)
T ss_pred             HHHhcCchHHHHHHHHHH-----HHhHHHHHHHHHHHHHHhcCCCCCCcccchHHHHHHHHHHHHHHHHHhHhhcchHHH
Confidence            777777766554433333     3334556666666666655  112333446666777777888888899985555554


Q ss_pred             HHHH
Q 008137          344 RLMI  347 (576)
Q Consensus       344 ~~~~  347 (576)
                      .-+.
T Consensus       316 ~~l~  319 (412)
T PF01770_consen  316 GELA  319 (412)
T ss_pred             HHHH
Confidence            4333

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.21  E-value=6.4e-10  Score=115.59  Aligned_cols=130  Identities=15%  Similarity=0.240  Sum_probs=117.4

Q ss_pred             HHHHHHHHh-hccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHhcch-HHHHHHHH
Q 008137           50 GALLYIKED-FRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFIGAIIMAIAPQ-PWVIILGR  127 (576)
Q Consensus        50 ~~~~~i~~~-~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~-~~~l~~~R  127 (576)
                      ...|.+.++ ++.+..+.   +++.+...++..++.++.+++.||+|||+.+..+.++.+++.++..+.++ .+.+.+..
T Consensus       232 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (365)
T TIGR00900       232 ALFPYVQSKYLGRGSTHY---GWVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVGLTPPNFPLFLVLW  308 (365)
T ss_pred             HHhHHHHHHHhCCchHHH---HHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhhchhHHHHHHHH
Confidence            566777665 78777777   99999999999999999999999999999999988888888888888774 88888999


Q ss_pred             HHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 008137          128 IFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFTKA  182 (576)
Q Consensus       128 ~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~  182 (576)
                      ++.|++.+...+...+++.|.+|+++|+++.++.+....+|..+++.+.+.+.+.
T Consensus       309 ~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~~  363 (365)
T TIGR00900       309 FAIGVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLADH  363 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999988764

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.21  E-value=4.6e-10  Score=122.72  Aligned_cols=146  Identities=16%  Similarity=0.098  Sum_probs=116.1

Q ss_pred             HHHHHHHHH-HhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHhc--chHHHHH
Q 008137           48 ISGALLYIK-EDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFIGAIIMAIA--PQPWVII  124 (576)
Q Consensus        48 ~~~~~~~i~-~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~~--~~~~~l~  124 (576)
                      ....+|.+. ++++.+..+.   +++.+...++..++.++.|+++||+|||+++..+.++..++.++....  .+.+.+.
T Consensus       294 ~~~~lp~~l~~~~g~~~~~~---g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  370 (496)
T PRK03893        294 IQALLPTYLKTDLGYDPHTV---ANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAIGGANVWVLG  370 (496)
T ss_pred             HHHHHHHHHHhhcCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccccHHHHHH
Confidence            445677776 5888888877   999999999999999999999999999999888877766665544433  3444555


Q ss_pred             HHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHhHHHH
Q 008137          125 LGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFTKAPGTWRWMLGVAGLPA  197 (576)
Q Consensus       125 ~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~Wr~~f~v~~~~~  197 (576)
                      +..++.|....+..+....++.|.+|+++|++++++.+....+|..+||.+.+.+.+..+ |+..+.+.+...
T Consensus       371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~g-~~~~~~~~~~~~  442 (496)
T PRK03893        371 LLLFFQQMLGQGISGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIAQRLD-LGTALASLSFSL  442 (496)
T ss_pred             HHHHHHHHHhcccchhhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHhccCC-hHHHHHHHHHHH
Confidence            556665554444556777889999999999999999999999999999999999999887 988876655443

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.21  E-value=9.6e-10  Score=119.62  Aligned_cols=164  Identities=17%  Similarity=0.091  Sum_probs=120.1

Q ss_pred             hhhhHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHhcc--h-H
Q 008137           44 DTGVISGALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFIGAIIMAIAP--Q-P  120 (576)
Q Consensus        44 ~~~~~~~~~~~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~--~-~  120 (576)
                      .........|.+.++++.+....   .+......+...++.++.|++.||+|||+.++.+.++.+++.++.+...  + .
T Consensus       286 ~~~~~~~~~p~i~~~~g~~~~~~---~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~~~  362 (479)
T PRK10077        286 GINVVLYYAPEIFKTLGASTDIA---LLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAP  362 (479)
T ss_pred             ChhHHHHHHHHHHHHcCCCCchH---HHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcCcc
Confidence            33444556688888888776665   6666677888899999999999999999999999999888887765432  1 1


Q ss_pred             -HHHHHHHHHHHhhhhhh-hhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhc------CCCchhHHHHHH
Q 008137          121 -WVIILGRIFVGLGVGMA-SMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFT------KAPGTWRWMLGV  192 (576)
Q Consensus       121 -~~l~~~R~l~G~~~g~~-~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~------~~~~~Wr~~f~v  192 (576)
                       .....+.++.+.+.+.. .+....+++|.+|+++|+.++++.+....+|.++++.+.+.+.      +..+ |++.|++
T Consensus       363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~-~~~~~~~  441 (479)
T PRK10077        363 GIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFH-NGFSYWI  441 (479)
T ss_pred             cHHHHHHHHHHHHHHhccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhcc-CccHHHH
Confidence             12233444445444432 3667899999999999999999999999999988866655443      3444 8888988


Q ss_pred             hHHHHHHHHHHH-hhccCCh
Q 008137          193 AGLPAVVQFGLM-MMLPESP  211 (576)
Q Consensus       193 ~~~~~~~~~~~~-~~l~esp  211 (576)
                      .++++++..+.. ++.||+.
T Consensus       442 ~~~~~~~~~~~~~~~~~e~~  461 (479)
T PRK10077        442 YGCMGVLAALFMWKFVPETK  461 (479)
T ss_pred             HHHHHHHHHHHHHhccccCC
Confidence            887777666554 4566653

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.19  E-value=5.8e-10  Score=117.90  Aligned_cols=141  Identities=23%  Similarity=0.176  Sum_probs=116.0

Q ss_pred             HHHHH-HHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHH-HHHhcchHHHHHHHH
Q 008137           50 GALLY-IKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFIGAI-IMAIAPQPWVIILGR  127 (576)
Q Consensus        50 ~~~~~-i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~-~~~~~~~~~~l~~~R  127 (576)
                      ..+|. +.++++.+..+.   +++.+...++..++.++.|++.||+|||+.+.++.++..+..+ +....++.+.+.+..
T Consensus       259 ~~~~~~~~~~~g~s~~~~---~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  335 (405)
T TIGR00891       259 DLLPTYLKADLGLSPHTV---ANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFAIGANVAVLGLGL  335 (405)
T ss_pred             hhhHHHHHHHhCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhCchhhhHHHHHHHHHHHHHHHHhCCchHHHHHHH
Confidence            34454 446678887777   9999999999999999999999999999998888776533332 334456677777777


Q ss_pred             HHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHh
Q 008137          128 IFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFTKAPGTWRWMLGVA  193 (576)
Q Consensus       128 ~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~Wr~~f~v~  193 (576)
                      ++.|++.++..+....++.|.+|+++|++++|+.+....+|..++|++.+.+.+..+.|+..+...
T Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~g~~~~~~~~~  401 (405)
T TIGR00891       336 FFQQMLVQGIWGILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIGALLAQRLDEYGTALASL  401 (405)
T ss_pred             HHHHHHHccchhhHHHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHhh
Confidence            888888887888888999999999999999999999999999999999999998776677766553

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=99.18  E-value=2.1e-09  Score=116.30  Aligned_cols=160  Identities=21%  Similarity=0.247  Sum_probs=139.3

Q ss_pred             HHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCch--HHHHHHHHHHHHHHHHHHh--------c
Q 008137           48 ISGALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRK--ISLLGADVLFFIGAIIMAI--------A  117 (576)
Q Consensus        48 ~~~~~~~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr--~~~~~~~~~~~i~~~~~~~--------~  117 (576)
                      +......-.++++.+..+.   ..+.-+..+..++|++++|++.||+|.|  +++.++++++.+..+...+        .
T Consensus       301 ~~~~~i~a~~~lg~s~~~l---~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~g~~G~~~~~~g~  377 (477)
T PF11700_consen  301 ISFAGIYATEVLGMSTTQL---IVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWIIIPLYGLFGFWPSFFGL  377 (477)
T ss_pred             HHHHHHHHHHhcCcCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHhhhcccCc
Confidence            3334444556899999888   7788888999999999999999999999  8999999888776666655        6


Q ss_pred             chHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHhHHHH
Q 008137          118 PQPWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFTKAPGTWRWMLGVAGLPA  197 (576)
Q Consensus       118 ~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~Wr~~f~v~~~~~  197 (576)
                      ++.+.+.+.-++.|++.|...+.+.++.+|..|+++.+..+|++....-...++||++.+.+.+..++-|+.++...++.
T Consensus       378 ~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~~l~~lf  457 (477)
T PF11700_consen  378 KSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATGSQRYGFLFLLVLF  457 (477)
T ss_pred             ccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHH
Confidence            78899999999999999999999999999999999999999999999999999999999999998888999999888888


Q ss_pred             HHHHHHHhhccCC
Q 008137          198 VVQFGLMMMLPES  210 (576)
Q Consensus       198 ~~~~~~~~~l~es  210 (576)
                      ++.+++++.++.+
T Consensus       458 ~~gl~ll~~v~~~  470 (477)
T PF11700_consen  458 LIGLILLFFVDVE  470 (477)
T ss_pred             HHHHHHHhhccch
Confidence            8877777666543

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.17  E-value=1.9e-09  Score=117.88  Aligned_cols=156  Identities=19%  Similarity=0.248  Sum_probs=136.9

Q ss_pred             hhhhHHHHHHHHHH-hhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHhcchHHH
Q 008137           44 DTGVISGALLYIKE-DFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFIGAIIMAIAPQPWV  122 (576)
Q Consensus        44 ~~~~~~~~~~~i~~-~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~  122 (576)
                      ....+..++|.+.+ .++.+....   |++.+++.+|..+|+++.+++.+|+++++.+..+.++++++.+..+++++.+.
T Consensus       233 ~~~a~~aLlPl~a~~~l~~~a~~y---Gll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~~~~~~  309 (524)
T PF05977_consen  233 FASAVWALLPLFARDVLGGGASGY---GLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALSPSFWL  309 (524)
T ss_pred             hhhHHHHhhhHHHHHHhCCcHHHH---HHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcchHHHH
Confidence            33444556787764 577776666   99999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHhHHHHHHHHH
Q 008137          123 IILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFTKAPGTWRWMLGVAGLPAVVQFG  202 (576)
Q Consensus       123 l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~Wr~~f~v~~~~~~~~~~  202 (576)
                      .++.-++.|++.........+.+.+..|++.|||.++++++....+..+|..+.|.+.+..+ -+..+.+.++..++..+
T Consensus       310 ~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~g-~~~al~~a~~~lll~~~  388 (524)
T PF05977_consen  310 ALIALFLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHFG-VRTALLIAGAALLLSAL  388 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999998887 88888877765555444


Q ss_pred             H
Q 008137          203 L  203 (576)
Q Consensus       203 ~  203 (576)
                      +
T Consensus       389 ~  389 (524)
T PF05977_consen  389 I  389 (524)
T ss_pred             H
Confidence            4

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.17  E-value=5.2e-10  Score=118.52  Aligned_cols=179  Identities=12%  Similarity=-0.024  Sum_probs=131.5

Q ss_pred             HHHHHHHHHHHHHhhHHHHhhhHHHHHhhcCCchhHHHHHHHHHhHHHHHHHHHHHHhhcccCChHHHHHHHHHHHHHHH
Q 008137          279 YAGVTVQVAQQFVGINTVMYYSPTIVQFAGFASKSTALALSLVTSGLNALGSIVSMAFVDKYGRRRLMIVSMFGLSSCLV  358 (576)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dk~grr~~~~~~~~~~~~~~~  358 (576)
                      +........++..+........|.+.++.+. +..+.+.......++..++.++.|+++||+|||+.+..+.++..++.+
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~-s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~   83 (392)
T PRK10473          5 LLCSFALVLLYPAGIDMYLVGLPRIAADLNA-SEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASL   83 (392)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhHHHHHHHhCC-CHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHH
Confidence            3344455555555666666778888888776 666777777888888899999999999999999999988877777766


Q ss_pred             HHHHHHHHhhhcCCCccccccccCCCCCCCCcccccCCCCcccccccccccccccCCCCCCCCCCccccccccccccccc
Q 008137          359 ALAVVFFQAAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAHKGNEYLPGACLIDEKSTDTLCSD  438 (576)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  438 (576)
                      ++.....                                                                         
T Consensus        84 ~~~~~~~-------------------------------------------------------------------------   90 (392)
T PRK10473         84 LCSLAET-------------------------------------------------------------------------   90 (392)
T ss_pred             HHHHhCc-------------------------------------------------------------------------
Confidence            5543311                                                                         


Q ss_pred             ccccccccCCCCcchhHHHHHHHHHHHHhcCCcccccchhccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 008137          439 EHRTYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEIYPLRYRGVGGGIAAVSNWTSNLIVSLTFLTLTEALG  518 (576)
Q Consensus       439 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~g~~~~~~~~~~l~~~~g  518 (576)
                                    .+..++...+.+.+.+ ...+....+..|.+|++.|++..++.+....++..++|.+.+.+.+..|
T Consensus        91 --------------~~~~~~~~~l~g~~~~-~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g  155 (392)
T PRK10473         91 --------------SSLFLAGRFLQGIGAG-CCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFP  155 (392)
T ss_pred             --------------HHHHHHHHHHHHhhhh-HHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcC
Confidence                          0222222222222222 2233456788899999999999999999999999999999998888889


Q ss_pred             cchhhHHHHHHHHHHHHHHHhhccCCCC
Q 008137          519 SAGTFLLFAGFSLLGLVAIYLLVPETKG  546 (576)
Q Consensus       519 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~  546 (576)
                      |+..+++.++++++..++.++..||++.
T Consensus       156 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~  183 (392)
T PRK10473        156 WQSLFYTMAAMGILVLLLSLFILKETRP  183 (392)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence            9989999888888877776677777654

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.17  E-value=8.4e-10  Score=117.30  Aligned_cols=159  Identities=15%  Similarity=0.037  Sum_probs=121.3

Q ss_pred             hhhHHHHHhhcCCchhHHHHHHHHHhHHHHHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccc
Q 008137          298 YYSPTIVQFAGFASKSTALALSLVTSGLNALGSIVSMAFVDKYGRRRLMIVSMFGLSSCLVALAVVFFQAAIHAPTVSQI  377 (576)
Q Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dk~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  377 (576)
                      ...|.+.++.+. +..+.+.......++..++.++.|.++||+|||+.+..+.++.+++.++......            
T Consensus        41 ~~l~~~~~~~g~-s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~------------  107 (394)
T PRK10213         41 SLLTPMAQDLGI-SEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVSFANS------------  107 (394)
T ss_pred             hhHHHHHHHcCC-CHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHCh------------
Confidence            345667777766 6677777777888888999999999999999999999999988887766554321            


Q ss_pred             ccccCCCCCCCCcccccCCCCcccccccccccccccCCCCCCCCCCcccccccccccccccccccccccCCCCcchhHHH
Q 008137          378 ESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAHKGNEYLPGACLIDEKSTDTLCSDEHRTYFISGCPSSFGWLAV  457 (576)
Q Consensus       378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~  457 (576)
                                                                                                 .+..+
T Consensus       108 ---------------------------------------------------------------------------~~~l~  112 (394)
T PRK10213        108 ---------------------------------------------------------------------------FSLLL  112 (394)
T ss_pred             ---------------------------------------------------------------------------HHHHH
Confidence                                                                                       13333


Q ss_pred             HHHHHHHHHhcCCcccccchhccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHH
Q 008137          458 VFLGAYIITYSPGMGTAPWIVNSEIYPLRYRGVGGGIAAVSNWTSNLIVSLTFLTLTEALGSAGTFLLFAGFSLLGLVAI  537 (576)
Q Consensus       458 ~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~  537 (576)
                      +.-.+.+.+.+ ...+....++.|.+|++.|+.+.++......++..++|.+.+.+.+..||+..|++.++++++..++.
T Consensus       113 ~~r~l~G~~~g-~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l~~~~~l~~  191 (394)
T PRK10213        113 IGRACLGLALG-GFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAVMGVLCIFWI  191 (394)
T ss_pred             HHHHHHHHhhH-HHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHH
Confidence            33333333333 23455667788999999999999999999999999999999999999999999998887777666555


Q ss_pred             HhhccCCC
Q 008137          538 YLLVPETK  545 (576)
Q Consensus       538 ~~~~~~~~  545 (576)
                      +...||++
T Consensus       192 ~~~~p~~~  199 (394)
T PRK10213        192 IKSLPSLP  199 (394)
T ss_pred             HHHCCCCC
Confidence            55567643

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.16  E-value=8.2e-09  Score=112.97  Aligned_cols=155  Identities=15%  Similarity=0.155  Sum_probs=122.3

Q ss_pred             HHHHHHhhccchhhhHHHHHHH-HHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHH---HHhc-chHHHHHHH
Q 008137           52 LLYIKEDFRDVEKKTWLQELIV-SMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFIGAII---MAIA-PQPWVIILG  126 (576)
Q Consensus        52 ~~~i~~~~~~~~~~~~~~g~i~-s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~---~~~~-~~~~~l~~~  126 (576)
                      .|.+.+++|.+..+.   +++. +...++..++.+++|+++||+|+|+.+.++.++.+++.+.   .+.. ++.+.+.+.
T Consensus       246 ~~~l~~~~G~s~~~~---g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~~~~~~~l~~~  322 (491)
T PRK11010        246 TTFLIRGVGFDAGEV---GLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSITDKNLYSMGAA  322 (491)
T ss_pred             HHHHHHhcCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHH
Confidence            444566788888887   8887 4667899999999999999999998877766655554432   2333 455556666


Q ss_pred             HHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHhHHHHHHHHHHHhh
Q 008137          127 RIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFTKAPGTWRWMLGVAGLPAVVQFGLMMM  206 (576)
Q Consensus       127 R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~Wr~~f~v~~~~~~~~~~~~~~  206 (576)
                      -+++.++.|...+...++..+..+++.++...++.+...++|..+++++.|.+.+..| |+..|.+.++++++.++....
T Consensus       323 ~~l~~~~~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~G-~~~~f~~~~~~~l~~l~~~~~  401 (491)
T PRK11010        323 VFFENLCGGMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEAHG-WPTFYLFSVAAAVPGLLLLLV  401 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-hHHHHHHHHHHHHHHHHHHHH
Confidence            7777777777777778889999999999999999999999999988889999988776 999999999988887777666


Q ss_pred             ccCC
Q 008137          207 LPES  210 (576)
Q Consensus       207 l~es  210 (576)
                      ++++
T Consensus       402 ~~~~  405 (491)
T PRK11010        402 CRQT  405 (491)
T ss_pred             HHhc
Confidence            5543

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.16  E-value=2.1e-10  Score=124.95  Aligned_cols=177  Identities=17%  Similarity=0.108  Sum_probs=133.5

Q ss_pred             HHHHHHHHHHHhhHHHHhhhHHHHHhhcCCchhHHHHHHHHHhHHHHHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHH
Q 008137          281 GVTVQVAQQFVGINTVMYYSPTIVQFAGFASKSTALALSLVTSGLNALGSIVSMAFVDKYGRRRLMIVSMFGLSSCLVAL  360 (576)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dk~grr~~~~~~~~~~~~~~~~~  360 (576)
                      .+....+.............|.+.++.+. +..+.+.......++.+++.++.|+++||+|||+.+..+.++..++.++.
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~p~~~~~~g~-s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~   84 (485)
T TIGR00711         6 VLMLGTFMAVLDSTIVNVAIPTIAGDLGS-SLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSLLC   84 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCC-ChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHHHH
Confidence            33444444555556677778888888776 66677888888899999999999999999999999998888877776655


Q ss_pred             HHHHHHhhhcCCCccccccccCCCCCCCCcccccCCCCcccccccccccccccCCCCCCCCCCccccccccccccccccc
Q 008137          361 AVVFFQAAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAHKGNEYLPGACLIDEKSTDTLCSDEH  440 (576)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  440 (576)
                      .....                                                                           
T Consensus        85 ~~~~~---------------------------------------------------------------------------   89 (485)
T TIGR00711        85 GVAPN---------------------------------------------------------------------------   89 (485)
T ss_pred             hCcCC---------------------------------------------------------------------------
Confidence            43311                                                                           


Q ss_pred             ccccccCCCCcchhHHHHHHHHHHHHhcCCcccccchhccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 008137          441 RTYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEIYPLRYRGVGGGIAAVSNWTSNLIVSLTFLTLTEALGSA  520 (576)
Q Consensus       441 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~g~~~~~~~~~~l~~~~g~~  520 (576)
                                  .+..++..++.+.+.+ ...+....+..|.+|++.|+.+.++......+|..++|.+.+.+.+..||+
T Consensus        90 ------------~~~l~~~~~~~G~~~~-~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~  156 (485)
T TIGR00711        90 ------------LELMIIFRVIQGFGGG-PLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYHWR  156 (485)
T ss_pred             ------------HHHHHHHHHHHHhhhh-hHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCcCce
Confidence                        1222333333333322 334566678899999999999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHHHHHHhhccCCCC
Q 008137          521 GTFLLFAGFSLLGLVAIYLLVPETKG  546 (576)
Q Consensus       521 ~~~~~~~~~~~i~~~~~~~~~~~~~~  546 (576)
                      ..|++.+.+.++..++.+++.|+.++
T Consensus       157 ~~f~~~~~~~~~~~~~~~~~~~~~~~  182 (485)
T TIGR00711       157 WIFLINVPIGIIVVVVAFFILPRDKP  182 (485)
T ss_pred             ehhhhhhHHHHHHHHHHHHHcCCccc
Confidence            99999888887777776666776543

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.15  E-value=2.1e-09  Score=116.34  Aligned_cols=166  Identities=19%  Similarity=0.095  Sum_probs=113.0

Q ss_pred             HHHHhhhhhhhhHHHHHHHHHHh-hccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhcc--CchHHH-HHHHHHHHHHH
Q 008137           36 IGGLLFGYDTGVISGALLYIKED-FRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRF--GRKISL-LGADVLFFIGA  111 (576)
Q Consensus        36 l~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~--Grr~~~-~~~~~~~~i~~  111 (576)
                      +..++...........+|.+.++ +|.+..+.   +++.+.+.++..++.++.|+++||+  |||... .....+..++.
T Consensus       260 l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~---~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~~~~~  336 (452)
T PRK11273        260 IANVFVYLLRYGILDWSPTYLKEVKHFALDKS---SWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIAT  336 (452)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHH
Confidence            33333333334455667776654 67777776   8888899999999999999999999  555432 22223333333


Q ss_pred             HHHHh--cchHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHH-HHHHHHHHhcCCCchhHH
Q 008137          112 IIMAI--APQPWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQF-LAYLINLAFTKAPGTWRW  188 (576)
Q Consensus       112 ~~~~~--~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~-l~~~l~~~l~~~~~~Wr~  188 (576)
                      ++..+  ..+.+...+..++.|.+..........+..|.+|+++||+++|+.+....+|.. ++|.+.+.+.+..+ |+.
T Consensus       337 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g-~~~  415 (452)
T PRK11273        337 IVYWLNPAGNPTVDMACMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFG-WDG  415 (452)
T ss_pred             HHHHHhcccChHHHHHHHHHHHHHHHhHHHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhc-chH
Confidence            32222  334555555566666544333334445678999999999999999988888765 47999999988877 999


Q ss_pred             HHHHhHHHHHHHHHHHh
Q 008137          189 MLGVAGLPAVVQFGLMM  205 (576)
Q Consensus       189 ~f~v~~~~~~~~~~~~~  205 (576)
                      .|++.++.+++.++...
T Consensus       416 ~f~~~~~~~~~~~~~~~  432 (452)
T PRK11273        416 GFMVMIGGSILAVILLI  432 (452)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99988887777666543

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.14  E-value=2e-09  Score=114.36  Aligned_cols=134  Identities=13%  Similarity=0.073  Sum_probs=116.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhhhhhhhhhHHHHHHhc
Q 008137           69 QELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFIGAIIMAIAPQPWVIILGRIFVGLGVGMASMTAPLYISEA  148 (576)
Q Consensus        69 ~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~  148 (576)
                      .|.+.++..+...++.++.|++.||+|||+.+.++.++.+++..+.+++++.+.+++.+++.|++.+........+..+.
T Consensus       256 ~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~  335 (396)
T TIGR00882       256 FGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFATTALEVVILKMLHAFEVPFLLVGCFKYITSQ  335 (396)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            38889999999999999999999999999999999999999888888889999999999999999887777777788888


Q ss_pred             cCcchhhHHHHH-HHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHhHHHHHHHHHH
Q 008137          149 SPAKIRGALVSA-NGFLITGGQFLAYLINLAFTKAPGTWRWMLGVAGLPAVVQFGL  203 (576)
Q Consensus       149 ~~~~~R~~~~~~-~~~~~~~G~~l~~~l~~~l~~~~~~Wr~~f~v~~~~~~~~~~~  203 (576)
                      .+++.|+...+. ++....+|.+++++++|++.+..| |+..|.+.+++.++..+.
T Consensus       336 ~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~G-~~~~f~~~~~~~~i~~~~  390 (396)
T TIGR00882       336 FDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSIG-FQGAYLVLGCIVLLFTLI  390 (396)
T ss_pred             CCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhcc-cHHHHHHHHHHHHHHHHH
Confidence            888888776665 678899999999999999999776 999999988877665444

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.14  E-value=1e-09  Score=116.07  Aligned_cols=164  Identities=15%  Similarity=0.030  Sum_probs=123.9

Q ss_pred             hHHHHhhhHHHHHhhcCCchhHHHHHHHHHhHHHHHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 008137          293 INTVMYYSPTIVQFAGFASKSTALALSLVTSGLNALGSIVSMAFVDKYGRRRLMIVSMFGLSSCLVALAVVFFQAAIHAP  372 (576)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dk~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  372 (576)
                      ........|.+.++.+. +..+.+.......++.+++.++.|++.||+|||+++..+.++.+++.++......       
T Consensus        19 ~~~~~~~l~~~~~~~g~-s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l~~~~~~-------   90 (382)
T PRK10091         19 EFGIMGVLTELAHDVGI-SIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAMFTLSSS-------   90 (382)
T ss_pred             HHHHHhChHHHHHHcCC-CHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHHhCc-------
Confidence            34555567777777766 6667788888889999999999999999999999999988888887776654421       


Q ss_pred             CccccccccCCCCCCCCcccccCCCCcccccccccccccccCCCCCCCCCCcccccccccccccccccccccccCCCCcc
Q 008137          373 TVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAHKGNEYLPGACLIDEKSTDTLCSDEHRTYFISGCPSSF  452 (576)
Q Consensus       373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~  452 (576)
                                                                                                      
T Consensus        91 --------------------------------------------------------------------------------   90 (382)
T PRK10091         91 --------------------------------------------------------------------------------   90 (382)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhHHHHHHHHHHHHhcCCcccccchhccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHH
Q 008137          453 GWLAVVFLGAYIITYSPGMGTAPWIVNSEIYPLRYRGVGGGIAAVSNWTSNLIVSLTFLTLTEALGSAGTFLLFAGFSLL  532 (576)
Q Consensus       453 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~i  532 (576)
                      .+..++...+.+.+.+. ..+.......|.+|++.|+.++++......++..+++.+.+.+.+..||+..|.+.+++.++
T Consensus        91 ~~~l~~~r~l~G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~  169 (382)
T PRK10091         91 YLMLAIGRLVSGFPHGA-FFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLLIAVFNIA  169 (382)
T ss_pred             HHHHHHHHHHHHhhhHH-HHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhccHHHHHHHHHHHHHH
Confidence            13333333333332221 22344456788899999999999999999999999999999999989999999998888777


Q ss_pred             HHHHHHhhccCCC
Q 008137          533 GLVAIYLLVPETK  545 (576)
Q Consensus       533 ~~~~~~~~~~~~~  545 (576)
                      ..+..++..||.+
T Consensus       170 ~~~~~~~~lp~~~  182 (382)
T PRK10091        170 VLASIYFWVPDIR  182 (382)
T ss_pred             HHHHHHHhCCCCC
Confidence            7666666677754

>PRK10504 putative transporter; Provisional

Probab=99.14  E-value=1.1e-09  Score=119.10  Aligned_cols=175  Identities=14%  Similarity=-0.015  Sum_probs=129.3

Q ss_pred             HHHHHHHHHHHhhHHHHhhhHHHHHhhcCCchhHHHHHHHHHhHHHHHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHH
Q 008137          281 GVTVQVAQQFVGINTVMYYSPTIVQFAGFASKSTALALSLVTSGLNALGSIVSMAFVDKYGRRRLMIVSMFGLSSCLVAL  360 (576)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dk~grr~~~~~~~~~~~~~~~~~  360 (576)
                      .+....+........+..+.|.+.++.+. +..+.+.......++..++.++.|+++||+|||+++..+.++..++.++.
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~p~~~~~~g~-s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~   92 (471)
T PRK10504         14 IVAFGFFMQSLDTTIVNTALPSMAQSLGE-SPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLGSLFC   92 (471)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHhCc-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHH
Confidence            34444455555566777789999988777 66667777777788888999999999999999999988877777666554


Q ss_pred             HHHHHHhhhcCCCccccccccCCCCCCCCcccccCCCCcccccccccccccccCCCCCCCCCCccccccccccccccccc
Q 008137          361 AVVFFQAAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAHKGNEYLPGACLIDEKSTDTLCSDEH  440 (576)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  440 (576)
                      .....                                                                           
T Consensus        93 ~~~~~---------------------------------------------------------------------------   97 (471)
T PRK10504         93 ALSGT---------------------------------------------------------------------------   97 (471)
T ss_pred             HHhCC---------------------------------------------------------------------------
Confidence            33210                                                                           


Q ss_pred             ccccccCCCCcchhHHHHHHHHHHHHhcCCcccccchhccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 008137          441 RTYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEIYPLRYRGVGGGIAAVSNWTSNLIVSLTFLTLTEALGSA  520 (576)
Q Consensus       441 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~g~~~~~~~~~~l~~~~g~~  520 (576)
                                  .+..++..++.+.+.+ ...+....+..|.+|++.|+++.|+.+....+|..++|.+.+.+.+..||+
T Consensus        98 ------------~~~l~~~~~l~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~gw~  164 (471)
T PRK10504         98 ------------LNELLLARVLQGVGGA-MMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYASWH  164 (471)
T ss_pred             ------------HHHHHHHHHHHHhhhH-HHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhccHH
Confidence                        1222333333333332 234455677789999999999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHHHHHHhhccCC
Q 008137          521 GTFLLFAGFSLLGLVAIYLLVPET  544 (576)
Q Consensus       521 ~~~~~~~~~~~i~~~~~~~~~~~~  544 (576)
                      ..|.+...+.++..+......|+.
T Consensus       165 ~~f~~~~~~~~l~~~~~~~~~~~~  188 (471)
T PRK10504        165 WIFLINIPVGIIGAIATLMLMPNY  188 (471)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCc
Confidence            999988887777777666666654

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.13  E-value=4.8e-09  Score=112.34  Aligned_cols=138  Identities=14%  Similarity=0.010  Sum_probs=103.0

Q ss_pred             HHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHhcc--hHHHHHH
Q 008137           48 ISGALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFIGAIIMAIAP--QPWVIIL  125 (576)
Q Consensus        48 ~~~~~~~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~--~~~~l~~  125 (576)
                      +...+|.+.++.+.+....   +.+.+...++..++.++.|++.||+|||+.+..+.++..++.+.....+  +...+.+
T Consensus       250 ~~~~~~~~~~~~g~~~~~~---~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  326 (426)
T PRK12307        250 IFGLLPTYLAGEGFDTGVV---SNLMTAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIFPLFRIPQDNYLLLGA  326 (426)
T ss_pred             HHHHHHHHHHHcCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHccccHHHHHH
Confidence            4456677777777766666   8888999999999999999999999999999888877766655444333  2222222


Q ss_pred             HHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHH
Q 008137          126 GRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFTKAPGTWRWM  189 (576)
Q Consensus       126 ~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~Wr~~  189 (576)
                      ..+..+.+..+..+....++.|.+|+++|++++|+......+|..++|.+.+++.+..+ +...
T Consensus       327 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l~~~~g-~~~~  389 (426)
T PRK12307        327 CLFGLMATNVGVGGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWLGITMG-LGAA  389 (426)
T ss_pred             HHHHHHHhcccHhHHHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHccc-HHHH
Confidence            22222223333345566788999999999999999999999999999999999988766 5543

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=99.12  E-value=3.2e-09  Score=114.87  Aligned_cols=165  Identities=15%  Similarity=0.064  Sum_probs=119.9

Q ss_pred             HHHHHhhHHHHhhhHHHHHhhcCCchhHHHHHHHHHhHHHHHHHHHHHHhhccc-CChHHHHHHHHHHHHHHHHHHHHHH
Q 008137          287 AQQFVGINTVMYYSPTIVQFAGFASKSTALALSLVTSGLNALGSIVSMAFVDKY-GRRRLMIVSMFGLSSCLVALAVVFF  365 (576)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dk~-grr~~~~~~~~~~~~~~~~~~~~~~  365 (576)
                      ......++.+..+.|.|+++..+.+..+++...........++.+++|+++||+ |||+.+..+.++..++.+++.....
T Consensus        19 ~~e~fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~~~~~   98 (493)
T PRK15462         19 IWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGASEI   98 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHhhc
Confidence            334445667778889998776555777888888888888899999999999999 9999999998888888765542210


Q ss_pred             HhhhcCCCccccccccCCCCCCCCcccccCCCCcccccccccccccccCCCCCCCCCCcccccccccccccccccccccc
Q 008137          366 QAAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAHKGNEYLPGACLIDEKSTDTLCSDEHRTYFI  445 (576)
Q Consensus       366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  445 (576)
                      .                                                                               
T Consensus        99 ~-------------------------------------------------------------------------------   99 (493)
T PRK15462         99 H-------------------------------------------------------------------------------   99 (493)
T ss_pred             c-------------------------------------------------------------------------------
Confidence            0                                                                               


Q ss_pred             cCCCCcchhHHHHHHHHHHHHhcCCcccccchhcccccccc--ccccchhHHHHHHHHHHHHHHHHHHHHHHhhccchhh
Q 008137          446 SGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEIYPLR--YRGVGGGIAAVSNWTSNLIVSLTFLTLTEALGSAGTF  523 (576)
Q Consensus       446 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~--~rg~~~g~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~  523 (576)
                             .....+.+.+...+.+ ...+...++.+|.+|++  .|.++.++.....++|+.++|.+.+++.+..||+..|
T Consensus       100 -------~~~~~l~l~li~iG~G-~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F  171 (493)
T PRK15462        100 -------PSFLYLSLAIIVCGYG-LFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWAMGF  171 (493)
T ss_pred             -------hhHHHHHHHHHHHhcc-cccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhhChHHHH
Confidence                   0111222222222222 22344557889999975  6999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHH
Q 008137          524 LLFAGFSLLGLVAIY  538 (576)
Q Consensus       524 ~~~~~~~~i~~~~~~  538 (576)
                      .+.++..+++.+..+
T Consensus       172 ~iaaigm~l~li~~~  186 (493)
T PRK15462        172 GLAAVGMIAGLVIFL  186 (493)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            887665555555443

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.11  E-value=8.6e-10  Score=118.88  Aligned_cols=181  Identities=13%  Similarity=0.024  Sum_probs=122.8

Q ss_pred             HHHHHHHHHHHHHhhHHHHhhhHHHHHhhcCCchhHHHHHHHHHhHHHHHHHHHHHHhhcccCChHHHHHHHHHHHHHHH
Q 008137          279 YAGVTVQVAQQFVGINTVMYYSPTIVQFAGFASKSTALALSLVTSGLNALGSIVSMAFVDKYGRRRLMIVSMFGLSSCLV  358 (576)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dk~grr~~~~~~~~~~~~~~~  358 (576)
                      +....+.....+.....+....|.+.+ .+ .+..+.+.......++..++.++.|+++||+|||+.+..+.++.+++.+
T Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~p~~~~-~g-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~  106 (438)
T TIGR00712        29 FLGIFFGYAAYYLVRKNFALAMPYLVE-QG-FSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAAVML  106 (438)
T ss_pred             HHHHHHHHHHHHHHhccHHhhhHHHHH-cC-CCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHHHHH
Confidence            333433333333333334555666554 44 4778888888899999999999999999999999998888777777766


Q ss_pred             HHHHHHHHhhhcCCCccccccccCCCCCCCCcccccCCCCcccccccccccccccCCCCCCCCCCccccccccccccccc
Q 008137          359 ALAVVFFQAAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAHKGNEYLPGACLIDEKSTDTLCSD  438 (576)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  438 (576)
                      ++......                                                                        
T Consensus       107 ~~~~~~~~------------------------------------------------------------------------  114 (438)
T TIGR00712       107 LMGFVPWA------------------------------------------------------------------------  114 (438)
T ss_pred             HHhccccc------------------------------------------------------------------------
Confidence            54432100                                                                        


Q ss_pred             ccccccccCCCCcchhHHHHHHHHHHHHhcCCcccccchhccccccccccccchhHHHHHHHHHHHHHHHHHHHHHH-hh
Q 008137          439 EHRTYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEIYPLRYRGVGGGIAAVSNWTSNLIVSLTFLTLTE-AL  517 (576)
Q Consensus       439 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~g~~~~~~~~~~l~~-~~  517 (576)
                                 ....+...+...+.+.+.+.. .+.......|.+|++.||+++|+.+....+++.+++.+.+...+ ..
T Consensus       115 -----------~~~~~~l~~~~~l~g~~~g~~-~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~  182 (438)
T TIGR00712       115 -----------TSSIAIMFVLLFLNGWFQGMG-WPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWFN  182 (438)
T ss_pred             -----------cchHHHHHHHHHHHHHHhhcc-hHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHhh
Confidence                       000112222233333333322 23344667799999999999999999999999998888776554 46


Q ss_pred             ccchhhHHHHHHHHHHHHHHHhhccCCC
Q 008137          518 GSAGTFLLFAGFSLLGLVAIYLLVPETK  545 (576)
Q Consensus       518 g~~~~~~~~~~~~~i~~~~~~~~~~~~~  545 (576)
                      ||+..|++.++++++..+..+++.||++
T Consensus       183 ~w~~~f~~~~~~~~i~~~~~~~~~~~~~  210 (438)
T TIGR00712       183 DWHAALYFPAICAIIVALFAFAMMRDTP  210 (438)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHhccCCH
Confidence            8999999988888887766667777653

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=99.11  E-value=3.2e-09  Score=111.01  Aligned_cols=174  Identities=17%  Similarity=0.066  Sum_probs=120.4

Q ss_pred             HHHHHHHHHHhhHHHHhhhHHHHHhhcCCchhHHHHHHHHHhHHHHHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHHH
Q 008137          282 VTVQVAQQFVGINTVMYYSPTIVQFAGFASKSTALALSLVTSGLNALGSIVSMAFVDKYGRRRLMIVSMFGLSSCLVALA  361 (576)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dk~grr~~~~~~~~~~~~~~~~~~  361 (576)
                      .....+..+..+.....+.|.++++..+.+..+.+++.....++.+++.++.|+++||+|||+.+..+.++..++.+++.
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~   85 (366)
T TIGR00886         6 SWFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAG   85 (366)
T ss_pred             HHHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHH
Confidence            34444455566677777888645444444778888888899999999999999999999999999999988888877766


Q ss_pred             HHH-HHhhhcCCCccccccccCCCCCCCCcccccCCCCcccccccccccccccCCCCCCCCCCccccccccccccccccc
Q 008137          362 VVF-FQAAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAHKGNEYLPGACLIDEKSTDTLCSDEH  440 (576)
Q Consensus       362 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  440 (576)
                      +.. .                                                                           
T Consensus        86 ~~~~~---------------------------------------------------------------------------   90 (366)
T TIGR00886        86 LAVQS---------------------------------------------------------------------------   90 (366)
T ss_pred             HHhhh---------------------------------------------------------------------------
Confidence            543 1                                                                           


Q ss_pred             ccccccCCCCcchhHHHHHHHHHHHHhcCCcccccchhccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHh----
Q 008137          441 RTYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEIYPLRYRGVGGGIAAVSNWTSNLIVSLTFLTLTEA----  516 (576)
Q Consensus       441 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~g~~~~~~~~~~l~~~----  516 (576)
                                  .+..++...+.+.+ . +..+....+.+|.+|++.|+.+.++......+|..+++.+.+.+.+.    
T Consensus        91 ------------~~~~~~~~~~~g~~-~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~  156 (366)
T TIGR00886        91 ------------YSVLLLLRLFIGIA-G-GSFASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFG  156 (366)
T ss_pred             ------------HHHHHHHHHHHHHh-c-hhhHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhc
Confidence                        12223333333333 2 22334456788999999999999999988888888888877776653    


Q ss_pred             ------hccchhh-HHHHHHHHHHHHHHHhhccCC
Q 008137          517 ------LGSAGTF-LLFAGFSLLGLVAIYLLVPET  544 (576)
Q Consensus       517 ------~g~~~~~-~~~~~~~~i~~~~~~~~~~~~  544 (576)
                            .+|+..| +..+++..+..++.+.+.+|+
T Consensus       157 ~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (366)
T TIGR00886       157 AGLPAHLAWGWAFVIVPAGILLLPALLIFFVGADT  191 (366)
T ss_pred             ccccccccccchhHHHHHHHHHHHHHHHHHhcccC
Confidence                  3677777 444555555444444555543

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=99.11  E-value=1.3e-09  Score=114.76  Aligned_cols=165  Identities=11%  Similarity=-0.028  Sum_probs=119.2

Q ss_pred             hhHHHHhhhHHHHHhhcCCchhHHHHHHHHHhHHHHHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 008137          292 GINTVMYYSPTIVQFAGFASKSTALALSLVTSGLNALGSIVSMAFVDKYGRRRLMIVSMFGLSSCLVALAVVFFQAAIHA  371 (576)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dk~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~  371 (576)
                      .+..+....|.+.++.+. +..+.+.+.....++..++.+..|+++||+|||+++.........+.........      
T Consensus         6 ~~~~~~~~lp~i~~~~~~-s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~------   78 (368)
T TIGR00903         6 IWVTFSPVLSLVAEDIDV-SKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLLDPFN------   78 (368)
T ss_pred             HHHHHHhhHHHHHHHhCc-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHhcc------
Confidence            355666677888888777 6778888888889999999999999999999998765544333332211111000      


Q ss_pred             CCccccccccCCCCCCCCcccccCCCCcccccccccccccccCCCCCCCCCCcccccccccccccccccccccccCCCCc
Q 008137          372 PTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAHKGNEYLPGACLIDEKSTDTLCSDEHRTYFISGCPSS  451 (576)
Q Consensus       372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~  451 (576)
                                                                                                      
T Consensus        79 --------------------------------------------------------------------------------   78 (368)
T TIGR00903        79 --------------------------------------------------------------------------------   78 (368)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             chhHHHHHHHHHHHHhcCCcccccchhccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHH
Q 008137          452 FGWLAVVFLGAYIITYSPGMGTAPWIVNSEIYPLRYRGVGGGIAAVSNWTSNLIVSLTFLTLTEALGSAGTFLLFAGFSL  531 (576)
Q Consensus       452 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~  531 (576)
                       .+..++.-.+.+.+.+  .........+|.+|+++|+++.++.+....+|..+++.+.+.+.+..||+..|++.+++++
T Consensus        79 -~~~l~~~R~l~G~g~~--~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~~~l~~  155 (368)
T TIGR00903        79 -YEWLLACQLLAALGQP--FLLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPIAAVAA  155 (368)
T ss_pred             -HHHHHHHHHHHHhHhH--HHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHH
Confidence             0222333333333322  2223334558889999999999999999999999999999999999999999999899888


Q ss_pred             HHHHHHHhhccCCCC
Q 008137          532 LGLVAIYLLVPETKG  546 (576)
Q Consensus       532 i~~~~~~~~~~~~~~  546 (576)
                      +..++.++++||.++
T Consensus       156 ~~~~~~~~~lp~~p~  170 (368)
T TIGR00903       156 AGIILVLAALPALPF  170 (368)
T ss_pred             HHHHHHHHHcCCCCC
Confidence            888777788887643

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=99.10  E-value=3.9e-09  Score=115.00  Aligned_cols=168  Identities=18%  Similarity=0.072  Sum_probs=123.8

Q ss_pred             HHHHHHHHHHhhHHHHhhhHHHHHhh--cCCchhHHHHHHHHHhHHHHHHHHHHHHhhcc-cCChHHHHHHHHHHHHHHH
Q 008137          282 VTVQVAQQFVGINTVMYYSPTIVQFA--GFASKSTALALSLVTSGLNALGSIVSMAFVDK-YGRRRLMIVSMFGLSSCLV  358 (576)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dk-~grr~~~~~~~~~~~~~~~  358 (576)
                      +....+..-.+++....++|.|+++.  .+.+..+++.+.....++..++.+++|+++|| +|||+++..+.++..++.+
T Consensus        15 l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~   94 (475)
T TIGR00924        15 LFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHF   94 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHHH
Confidence            33344444555677777888888764  34477888888899899999999999999999 8999999999998888877


Q ss_pred             HHHHHHHHhhhcCCCccccccccCCCCCCCCcccccCCCCcccccccccccccccCCCCCCCCCCccccccccccccccc
Q 008137          359 ALAVVFFQAAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAHKGNEYLPGACLIDEKSTDTLCSD  438 (576)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  438 (576)
                      ++.....                                                                         
T Consensus        95 ~~~~~~~-------------------------------------------------------------------------  101 (475)
T TIGR00924        95 MLAMSIY-------------------------------------------------------------------------  101 (475)
T ss_pred             HHHhccc-------------------------------------------------------------------------
Confidence            6664311                                                                         


Q ss_pred             ccccccccCCCCcchhHHHHHHHHHHHHhcCCcccccchhccccccccc---cccchhHHHHHHHHHHHHHHHHHHHHHH
Q 008137          439 EHRTYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEIYPLRY---RGVGGGIAAVSNWTSNLIVSLTFLTLTE  515 (576)
Q Consensus       439 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~---rg~~~g~~~~~~~~g~~~~~~~~~~l~~  515 (576)
                                    .+...+...+.+.+.+ ...+....+.+|.+|++.   |+.+.++.+...++|.+++|.+.+.+.+
T Consensus       102 --------------~~~~~~~~~l~g~g~g-~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~  166 (475)
T TIGR00924       102 --------------PDLIFYGLGTIAVGSG-LFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAE  166 (475)
T ss_pred             --------------HhHHHHHHHHHHhccc-cccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHH
Confidence                          0222223333322222 234555677788888654   8889999999999999999999999999


Q ss_pred             hhccchhhHHHHHHHHHHHHHH
Q 008137          516 ALGSAGTFLLFAGFSLLGLVAI  537 (576)
Q Consensus       516 ~~g~~~~~~~~~~~~~i~~~~~  537 (576)
                      ..||+..|.+.++..+++.+..
T Consensus       167 ~~g~~~~f~~~~~~~~~~~l~~  188 (475)
T TIGR00924       167 NYGYHVGFNLAAVGMVIGLLTF  188 (475)
T ss_pred             hcChHHHHHHHHHHHHHHHHHH
Confidence            9999999988776665554443

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.10  E-value=2.5e-09  Score=113.85  Aligned_cols=168  Identities=11%  Similarity=-0.041  Sum_probs=123.0

Q ss_pred             HHHHhhHHHHhhhHHHHHhhcCCchhHHHHHHHHHhHHHHHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHHHHHHHHh
Q 008137          288 QQFVGINTVMYYSPTIVQFAGFASKSTALALSLVTSGLNALGSIVSMAFVDKYGRRRLMIVSMFGLSSCLVALAVVFFQA  367 (576)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dk~grr~~~~~~~~~~~~~~~~~~~~~~~~  367 (576)
                      ....+.+....+.+.++++..+.+....++......+...+..++.|+++||+|||+++..+..+..++.+++.....  
T Consensus        21 ~~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~--   98 (400)
T PRK11646         21 LVVLGFFVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAIAHE--   98 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHhcc--
Confidence            334445555666676665544447888888888888888888999999999999999999988888888776654311  


Q ss_pred             hhcCCCccccccccCCCCCCCCcccccCCCCcccccccccccccccCCCCCCCCCCcccccccccccccccccccccccC
Q 008137          368 AIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAHKGNEYLPGACLIDEKSTDTLCSDEHRTYFISG  447 (576)
Q Consensus       368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  447 (576)
                                                                                                      
T Consensus        99 --------------------------------------------------------------------------------   98 (400)
T PRK11646         99 --------------------------------------------------------------------------------   98 (400)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCcchhHHHHHHHHHHHHhcCCcccccchhccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHH
Q 008137          448 CPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEIYPLRYRGVGGGIAAVSNWTSNLIVSLTFLTLTEALGSAGTFLLFA  527 (576)
Q Consensus       448 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~  527 (576)
                           .|...+...+.+.+.+ ...+...++..|.+|++.|+++.|+.+....+|..++|.+.+.+. ..|++..|++.+
T Consensus        99 -----~~~l~~~~~l~g~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~-~~g~~~~f~~~~  171 (400)
T PRK11646         99 -----PWLLWLSCILSGLGGT-LFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL-QYDFRLVCATGA  171 (400)
T ss_pred             -----HHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHH
Confidence                 1333333333333322 233445567789999999999999999999999999999999988 678988888888


Q ss_pred             HHHHHHHHHHHhhccCC
Q 008137          528 GFSLLGLVAIYLLVPET  544 (576)
Q Consensus       528 ~~~~i~~~~~~~~~~~~  544 (576)
                      .+.++..++..++.||.
T Consensus       172 ~~~~~~~i~~~~~~~~~  188 (400)
T PRK11646        172 VLFVLAAAFNAWLLPAY  188 (400)
T ss_pred             HHHHHHHHHHHHhCCcc
Confidence            77776665555556653

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.10  E-value=4.3e-09  Score=114.76  Aligned_cols=168  Identities=12%  Similarity=0.016  Sum_probs=114.3

Q ss_pred             HHHHHHhhHHHHhhhHHHHHhhcCCchhHHHHHHHHHhHHHHHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHHHHHHH
Q 008137          286 VAQQFVGINTVMYYSPTIVQFAGFASKSTALALSLVTSGLNALGSIVSMAFVDKYGRRRLMIVSMFGLSSCLVALAVVFF  365 (576)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dk~grr~~~~~~~~~~~~~~~~~~~~~~  365 (576)
                      ++..+........+.|.+.++.+. +..+.+.......++..++.++.|+++||+|||+++..+.++..++.++..+...
T Consensus        45 ~~~~~~~~~~~~~~~~~l~~~~gl-s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~s  123 (476)
T PLN00028         45 FFTCFVSTFAAAPLLPIIRDNLNL-TKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVFCMSLVSS  123 (476)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHhcC
Confidence            333444444555566777777777 6667777777788888899999999999999999988877777766655544311


Q ss_pred             HhhhcCCCccccccccCCCCCCCCcccccCCCCcccccccccccccccCCCCCCCCCCcccccccccccccccccccccc
Q 008137          366 QAAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAHKGNEYLPGACLIDEKSTDTLCSDEHRTYFI  445 (576)
Q Consensus       366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  445 (576)
                                                                                                      
T Consensus       124 --------------------------------------------------------------------------------  123 (476)
T PLN00028        124 --------------------------------------------------------------------------------  123 (476)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cCCCCcchhHHHHHHHHHHHHhcCCcccccchhccccccccccccchhHHHHHHHHHHHHHHHHHHHHHH---------h
Q 008137          446 SGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEIYPLRYRGVGGGIAAVSNWTSNLIVSLTFLTLTE---------A  516 (576)
Q Consensus       446 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~g~~~~~~~~~~l~~---------~  516 (576)
                             .+..++..++.+++.+ ...+ ...+.+|.+|++.||.++|+.+....+|..+++.+.+.+..         .
T Consensus       124 -------~~~l~~~r~l~G~~~~-~~~~-~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~  194 (476)
T PLN00028        124 -------ATGFIAVRFFIGFSLA-TFVS-CQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSF  194 (476)
T ss_pred             -------HHHHHHHHHHHHHHHH-hhHH-HHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcch
Confidence                   0222222233333222 2222 33467899999999999999988888888877766655432         1


Q ss_pred             hccchhhHHHHHHHHHHHHHHHhhccC
Q 008137          517 LGSAGTFLLFAGFSLLGLVAIYLLVPE  543 (576)
Q Consensus       517 ~g~~~~~~~~~~~~~i~~~~~~~~~~~  543 (576)
                      .||+.+|++.+++.++..++.+++.++
T Consensus       195 ~gWr~~f~i~g~l~l~~~l~~~~~~~~  221 (476)
T PLN00028        195 TAWRIAFFVPGLLHIIMGILVLTLGQD  221 (476)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHcCc
Confidence            479999999998888776666555443

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.10  E-value=3.3e-09  Score=110.18  Aligned_cols=168  Identities=17%  Similarity=0.064  Sum_probs=136.2

Q ss_pred             HHHHHHhhHHHHhhhHHHHHhhcCCchhHHHHHHHHHhHHHHHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHHHHHHH
Q 008137          286 VAQQFVGINTVMYYSPTIVQFAGFASKSTALALSLVTSGLNALGSIVSMAFVDKYGRRRLMIVSMFGLSSCLVALAVVFF  365 (576)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dk~grr~~~~~~~~~~~~~~~~~~~~~~  365 (576)
                      .+...+......-.+|.+-++.+. +...++.+...+..+..+++++...+.||+.||++++..+.+..++.++..+...
T Consensus        22 ~F~igttEfv~~gLLp~iA~dl~v-s~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lFi~~n~l~alAp~  100 (394)
T COG2814          22 AFAIGTTEFVPVGLLPPIAADLGV-SEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLSALAPS  100 (394)
T ss_pred             HHHHHhHHHHHHhchHHHHHHcCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHhcc
Confidence            333334445666677888888887 7788899999999999999999999999999999999999999999888777643


Q ss_pred             HhhhcCCCccccccccCCCCCCCCcccccCCCCcccccccccccccccCCCCCCCCCCcccccccccccccccccccccc
Q 008137          366 QAAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAHKGNEYLPGACLIDEKSTDTLCSDEHRTYFI  445 (576)
Q Consensus       366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  445 (576)
                      .                                                                               
T Consensus       101 f-------------------------------------------------------------------------------  101 (394)
T COG2814         101 F-------------------------------------------------------------------------------  101 (394)
T ss_pred             H-------------------------------------------------------------------------------
Confidence            2                                                                               


Q ss_pred             cCCCCcchhHHHHHHHHHHHHhcCCcccccchhccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHhhccchhhHH
Q 008137          446 SGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEIYPLRYRGVGGGIAAVSNWTSNLIVSLTFLTLTEALGSAGTFLL  525 (576)
Q Consensus       446 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~  525 (576)
                              +..++.=.+....-+ .+.++...+..++.|+++|+++.++..+...++..++.++..++-|.+||+.+|+.
T Consensus       102 --------~~Ll~aR~~~g~a~G-~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GWR~~F~~  172 (394)
T COG2814         102 --------AVLLLARALAGLAHG-VFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLFGWRATFLA  172 (394)
T ss_pred             --------HHHHHHHHHHHHHHH-HHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHHhhHHHHHHH
Confidence                    222222222222221 22345667889999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhcc
Q 008137          526 FAGFSLLGLVAIYLLVP  542 (576)
Q Consensus       526 ~~~~~~i~~~~~~~~~~  542 (576)
                      .+.++++.++..+..+|
T Consensus       173 ia~l~ll~~~~~~~~lP  189 (394)
T COG2814         173 IAVLALLALLLLWKLLP  189 (394)
T ss_pred             HHHHHHHHHHHHHHhCC
Confidence            99999999999999999

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.10  E-value=2.1e-09  Score=115.52  Aligned_cols=114  Identities=21%  Similarity=0.280  Sum_probs=99.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHhc-chHHHHHHHHHHHHhhhhhhhhhHHHHHHhc
Q 008137           70 ELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFIGAIIMAIA-PQPWVIILGRIFVGLGVGMASMTAPLYISEA  148 (576)
Q Consensus        70 g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~~-~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~  148 (576)
                      +++.++..++..++.+++++++||+|+|+.+.++.++..++.++..+. ++.+.+++..++.|++.+...+...++++|.
T Consensus       260 ~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  339 (437)
T TIGR00792       260 SYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFAGSNLPLILVLIILAGFGQNFVTGLVWALVADT  339 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            777888899999999999999999999999999998888888777765 3567778888999999999999999999988


Q ss_pred             cC-------cchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 008137          149 SP-------AKIRGALVSANGFLITGGQFLAYLINLAFTKAP  183 (576)
Q Consensus       149 ~~-------~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~~  183 (576)
                      .+       ++.+|.+.++++....+|..+++.+.+.+.+..
T Consensus       340 ~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~~  381 (437)
T TIGR00792       340 VDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILGII  381 (437)
T ss_pred             hhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            65       455799999999999999999999999887543

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.09  E-value=5.6e-09  Score=110.63  Aligned_cols=151  Identities=19%  Similarity=0.035  Sum_probs=116.4

Q ss_pred             HHHHHHHHHhhccchhhhHHHHHHHHHHH-HHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHh------cchHH
Q 008137           49 SGALLYIKEDFRDVEKKTWLQELIVSMAV-AGAIFGAGFGGWINDRFGRKISLLGADVLFFIGAIIMAI------APQPW  121 (576)
Q Consensus        49 ~~~~~~i~~~~~~~~~~~~~~g~i~s~~~-~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~------~~~~~  121 (576)
                      ....+.+.+|.|.+.++.   |++..... ....++.++.|++.||+|+|+.+..+.++.++..+....      .++..
T Consensus       228 ~~~~~~~l~~~G~s~~~i---g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (390)
T TIGR02718       228 FGLSKLYLVDAGWPLEWI---GRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAFWLAPGIA  304 (390)
T ss_pred             HHHhhHHHHhcCCCHHHH---HHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcccCCcHH
Confidence            334566667788888887   88888775 466778899999999999999988877665333332221      23444


Q ss_pred             HHHHHHHHHHhhhhhhhhhHHHHHHhccCc-chhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHhHHHHHHH
Q 008137          122 VIILGRIFVGLGVGMASMTAPLYISEASPA-KIRGALVSANGFLITGGQFLAYLINLAFTKAPGTWRWMLGVAGLPAVVQ  200 (576)
Q Consensus       122 ~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~-~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~Wr~~f~v~~~~~~~~  200 (576)
                      .+.....+.+++.|...+...+.+.+..++ ++|++.+++.+...++|..+++.++|.+.+..+ |+..|++.+++.++.
T Consensus       305 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~G-~~~~f~~~~~~~l~a  383 (390)
T TIGR02718       305 VAWSCSAFGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDRFG-YAGGFLSGTVLAVLA  383 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-cHHHHHHHHHHHHHH
Confidence            455566677777888888888888888776 789999999999999999999999999998776 999999888777665


Q ss_pred             HHH
Q 008137          201 FGL  203 (576)
Q Consensus       201 ~~~  203 (576)
                      .+.
T Consensus       384 ~~~  386 (390)
T TIGR02718       384 ILL  386 (390)
T ss_pred             HHH
Confidence            544

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=99.09  E-value=3.1e-09  Score=112.72  Aligned_cols=164  Identities=12%  Similarity=0.042  Sum_probs=118.3

Q ss_pred             HHHHhhhHHHHHhhcCCchhHHHHHHHHHhHHHHHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC
Q 008137          294 NTVMYYSPTIVQFAGFASKSTALALSLVTSGLNALGSIVSMAFVDKYGRRRLMIVSMFGLSSCLVALAVVFFQAAIHAPT  373 (576)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dk~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  373 (576)
                      .......|.+.++.+. +..+.+.......++..++.++.|+++||+|||+.+..+.++..++.++......        
T Consensus        25 ~~~~p~~~~i~~~~~~-s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~--------   95 (394)
T PRK11652         25 TIYVPAIADMARDLNV-REGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVALFAHS--------   95 (394)
T ss_pred             HHHhccHHHHHHHhCC-CHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHcc--------
Confidence            3344446777777776 6677788888888999999999999999999999998888777777665443211        


Q ss_pred             ccccccccCCCCCCCCcccccCCCCcccccccccccccccCCCCCCCCCCcccccccccccccccccccccccCCCCcch
Q 008137          374 VSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAHKGNEYLPGACLIDEKSTDTLCSDEHRTYFISGCPSSFG  453 (576)
Q Consensus       374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~  453 (576)
                                                                                                     .
T Consensus        96 -------------------------------------------------------------------------------~   96 (394)
T PRK11652         96 -------------------------------------------------------------------------------L   96 (394)
T ss_pred             -------------------------------------------------------------------------------H
Confidence                                                                                           0


Q ss_pred             hHHHHHHHHHHHHhcCCcccccchhccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHH
Q 008137          454 WLAVVFLGAYIITYSPGMGTAPWIVNSEIYPLRYRGVGGGIAAVSNWTSNLIVSLTFLTLTEALGSAGTFLLFAGFSLLG  533 (576)
Q Consensus       454 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~  533 (576)
                      +..++...+.+.+.+ ...+....+..|.++++.++...++.+....++..++|.+.+.+.+..||+..|++.+++.++.
T Consensus        97 ~~l~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~~~~~~~  175 (394)
T PRK11652         97 TVLIAASAIQGLGTG-VGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFLLLLGAGV  175 (394)
T ss_pred             HHHHHHHHHHHhhhh-HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHH
Confidence            222222222222222 1223344566788888889999999999999999999999999998889999999888777766


Q ss_pred             HHHHHhhccCCCC
Q 008137          534 LVAIYLLVPETKG  546 (576)
Q Consensus       534 ~~~~~~~~~~~~~  546 (576)
                      .++..++.||++.
T Consensus       176 ~~~~~~~~~~~~~  188 (394)
T PRK11652        176 TFSMARWMPETRP  188 (394)
T ss_pred             HHHHHHhCCccCc
Confidence            6655566777543

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=99.08  E-value=1.3e-09  Score=114.46  Aligned_cols=163  Identities=13%  Similarity=0.061  Sum_probs=124.4

Q ss_pred             HHHHhhhHHHHHhhcCCchhHHHHHHHHHhHHHHHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC
Q 008137          294 NTVMYYSPTIVQFAGFASKSTALALSLVTSGLNALGSIVSMAFVDKYGRRRLMIVSMFGLSSCLVALAVVFFQAAIHAPT  373 (576)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dk~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  373 (576)
                      .......|.+.++.+. +..+.+.......++..++.++.|+++||+|||+.+..+.++..++.+++.....        
T Consensus         8 ~~~~p~~~~~~~~~~~-s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~--------   78 (377)
T PRK11102          8 DMYLPALPVIAADFGV-SAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQT--------   78 (377)
T ss_pred             HHHhccHHHHHHHhCC-CHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHcc--------
Confidence            3344556777777766 6778888888888999999999999999999999999988888888776654421        


Q ss_pred             ccccccccCCCCCCCCcccccCCCCcccccccccccccccCCCCCCCCCCcccccccccccccccccccccccCCCCcch
Q 008137          374 VSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAHKGNEYLPGACLIDEKSTDTLCSDEHRTYFISGCPSSFG  453 (576)
Q Consensus       374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~  453 (576)
                                                                                                     .
T Consensus        79 -------------------------------------------------------------------------------~   79 (377)
T PRK11102         79 -------------------------------------------------------------------------------I   79 (377)
T ss_pred             -------------------------------------------------------------------------------H
Confidence                                                                                           1


Q ss_pred             hHHHHHHHHHHHHhcCCcccccchhccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHH
Q 008137          454 WLAVVFLGAYIITYSPGMGTAPWIVNSEIYPLRYRGVGGGIAAVSNWTSNLIVSLTFLTLTEALGSAGTFLLFAGFSLLG  533 (576)
Q Consensus       454 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~  533 (576)
                      +...+...+.+.+.+ ...+....+..|.+|++.|++..++.+....+|..++|.+.+.+.+..||+..|++.+++.++.
T Consensus        80 ~~~~~~~~l~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  158 (377)
T PRK11102         80 DQLIYMRFLHGLAAA-AASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLALAAILA  158 (377)
T ss_pred             HHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHH
Confidence            222333333333322 2234455778899999999999999999999999999999999999899999999888888887


Q ss_pred             HHHHHhhccCCC
Q 008137          534 LVAIYLLVPETK  545 (576)
Q Consensus       534 ~~~~~~~~~~~~  545 (576)
                      .+...+..||++
T Consensus       159 ~~~~~~~~~~~~  170 (377)
T PRK11102        159 AALVFFFIPETL  170 (377)
T ss_pred             HHHHHHhCCccC
Confidence            776666677654

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.08  E-value=1.4e-09  Score=119.07  Aligned_cols=178  Identities=15%  Similarity=0.010  Sum_probs=130.4

Q ss_pred             HHHHHHHHHHHHHhhHHHHhhhHHHHHhhcCCchhHHHHHHHHHhHHHHHHHHHHHHhhcccCChHHHHHHHHHHHHHHH
Q 008137          279 YAGVTVQVAQQFVGINTVMYYSPTIVQFAGFASKSTALALSLVTSGLNALGSIVSMAFVDKYGRRRLMIVSMFGLSSCLV  358 (576)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dk~grr~~~~~~~~~~~~~~~  358 (576)
                      +..+.+..+....-......-.|.+.++.+. +..+.+.....+.++...+.+..|+++||+|||+++..+.++..++.+
T Consensus         8 ~~~~~~~~~~~~ld~tiv~~a~p~i~~~l~~-s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~~~~~   86 (495)
T PRK14995          8 LVIIVLVYIPVAIDATVLHVAAPTLSMTLGA-SGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFGLASL   86 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence            4444444555555556677778888887766 566667777777888888899999999999999999999888888877


Q ss_pred             HHHHHHHHhhhcCCCccccccccCCCCCCCCcccccCCCCcccccccccccccccCCCCCCCCCCccccccccccccccc
Q 008137          359 ALAVVFFQAAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAHKGNEYLPGACLIDEKSTDTLCSD  438 (576)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  438 (576)
                      +......                                                                         
T Consensus        87 ~~~~a~~-------------------------------------------------------------------------   93 (495)
T PRK14995         87 AAAFSPT-------------------------------------------------------------------------   93 (495)
T ss_pred             HHHHcCC-------------------------------------------------------------------------
Confidence            6664411                                                                         


Q ss_pred             ccccccccCCCCcchhHHHHHHHHHHHHhcCCcccccchhcccc-ccccccccchhHHHHHHHHHHHHHHHHHHHHHHhh
Q 008137          439 EHRTYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEI-YPLRYRGVGGGIAAVSNWTSNLIVSLTFLTLTEAL  517 (576)
Q Consensus       439 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~-~p~~~rg~~~g~~~~~~~~g~~~~~~~~~~l~~~~  517 (576)
                                    .+..++.-.+.+.+.+ +..+.......+. .|++.|+++.|+......+|..++|.+.+.+.+..
T Consensus        94 --------------~~~li~~r~l~G~g~~-~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~  158 (495)
T PRK14995         94 --------------ASWLIATRALLAIGAA-MIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEHF  158 (495)
T ss_pred             --------------HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence                          1333333333443333 2233333444444 47789999999999999999999999999999999


Q ss_pred             ccchhhHHHHHHHHHHHHHHHhhccCCC
Q 008137          518 GSAGTFLLFAGFSLLGLVAIYLLVPETK  545 (576)
Q Consensus       518 g~~~~~~~~~~~~~i~~~~~~~~~~~~~  545 (576)
                      ||++.|++...+.++..++.++++|+.+
T Consensus       159 gwr~~f~i~~~~~~~~~~l~~~~l~~~~  186 (495)
T PRK14995        159 YWGSVFLINVPIVLVVMGLTARYVPRQA  186 (495)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence            9999999988888887777777777653

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.07  E-value=8e-10  Score=114.37  Aligned_cols=165  Identities=22%  Similarity=0.190  Sum_probs=121.1

Q ss_pred             hhHHHHhhhH-HHHHhhcCCchhHHHHHHHHHhHHHHHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 008137          292 GINTVMYYSP-TIVQFAGFASKSTALALSLVTSGLNALGSIVSMAFVDKYGRRRLMIVSMFGLSSCLVALAVVFFQAAIH  370 (576)
Q Consensus       292 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dk~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~  370 (576)
                      .........| .+.++.+. +..+.+.+.....++..++.++.|+++||+|||+++..+.++.+++.++..+. .     
T Consensus        11 ~~~~~~~~~~~~~~~~~~~-s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~-~-----   83 (352)
T PF07690_consen   11 GFSIISPALPLYLAEELGL-SPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAFA-S-----   83 (352)
T ss_dssp             HHHHHHHHHH-HHHCCSTT-TSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHH-C-----
T ss_pred             HHHHHHHHHHHHHHHccCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhhh-h-----
Confidence            3444555566 44444454 67778888888899999999999999999999999999988888884444422 0     


Q ss_pred             CCCccccccccCCCCCCCCcccccCCCCcccccccccccccccCCCCCCCCCCcccccccccccccccccccccccCCCC
Q 008137          371 APTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAHKGNEYLPGACLIDEKSTDTLCSDEHRTYFISGCPS  450 (576)
Q Consensus       371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~  450 (576)
                                                                                                      
T Consensus        84 --------------------------------------------------------------------------------   83 (352)
T PF07690_consen   84 --------------------------------------------------------------------------------   83 (352)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cchhHHHHHHHHHHHHhcCCcccccchhccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHH
Q 008137          451 SFGWLAVVFLGAYIITYSPGMGTAPWIVNSEIYPLRYRGVGGGIAAVSNWTSNLIVSLTFLTLTEALGSAGTFLLFAGFS  530 (576)
Q Consensus       451 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~  530 (576)
                       ..+..++..++.+.+.+ ...+....+..|.+|+++|+..+|+.+....+|..++|.+.+.+.+..||+..|++.+++.
T Consensus        84 -~~~~~~~~~~l~g~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~~~~~  161 (352)
T PF07690_consen   84 -NFWLLLIARFLLGIGSG-FFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLISAILS  161 (352)
T ss_dssp             -CHHHHHHHHHHHHHHHH-HHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHHHHHH
T ss_pred             -hHHHHhhhccccccccc-cccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhccccccccccccchh
Confidence             01333333333333332 3445666788999999999999999999999999999999999998899999999999999


Q ss_pred             HHHHHHHHhhccCCC
Q 008137          531 LLGLVAIYLLVPETK  545 (576)
Q Consensus       531 ~i~~~~~~~~~~~~~  545 (576)
                      ++..++...+.++++
T Consensus       162 ~~~~il~~~~~~~~~  176 (352)
T PF07690_consen  162 LIAAILFILFLPEPP  176 (352)
T ss_dssp             HHHHHHHHCCC---S
T ss_pred             hhhhhhHhhhhhhcc
Confidence            988775445554433

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=99.07  E-value=3e-09  Score=113.80  Aligned_cols=159  Identities=15%  Similarity=0.007  Sum_probs=117.7

Q ss_pred             hhHHHHHhhcCCchhHHHHHHHHHhHHHHHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccc
Q 008137          299 YSPTIVQFAGFASKSTALALSLVTSGLNALGSIVSMAFVDKYGRRRLMIVSMFGLSSCLVALAVVFFQAAIHAPTVSQIE  378 (576)
Q Consensus       299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dk~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  378 (576)
                      -.|.+.++.+. +..........+.++..++.++.|+++||+|||+++..+..+..++.++......             
T Consensus        38 ~l~~i~~~~~~-~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~-------------  103 (413)
T PRK15403         38 GIINVVRDFNA-DVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLFTTS-------------  103 (413)
T ss_pred             CHHHHHHHhCC-CHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHHcCC-------------
Confidence            34444555555 6666777777888888999999999999999999999888877777665554311             


Q ss_pred             cccCCCCCCCCcccccCCCCcccccccccccccccCCCCCCCCCCcccccccccccccccccccccccCCCCcchhHHHH
Q 008137          379 SSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAHKGNEYLPGACLIDEKSTDTLCSDEHRTYFISGCPSSFGWLAVV  458 (576)
Q Consensus       379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~  458 (576)
                                                                                                .+..++
T Consensus       104 --------------------------------------------------------------------------~~~l~~  109 (413)
T PRK15403        104 --------------------------------------------------------------------------MTQFLI  109 (413)
T ss_pred             --------------------------------------------------------------------------HHHHHH
Confidence                                                                                      122233


Q ss_pred             HHHHHHHHhcCCcccccchhccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHH
Q 008137          459 FLGAYIITYSPGMGTAPWIVNSEIYPLRYRGVGGGIAAVSNWTSNLIVSLTFLTLTEALGSAGTFLLFAGFSLLGLVAIY  538 (576)
Q Consensus       459 ~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~~  538 (576)
                      .-++.+.+.+ ...+....+..|.+|++.+++.+++.+....++..++|.+.+.+.+..||+..|++.+++.++..+..+
T Consensus       110 ~r~l~Gi~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~~~~~~~i~~~~~~  188 (413)
T PRK15403        110 ARFIQGTSIC-FIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAIIAVMGLIAFVGLL  188 (413)
T ss_pred             HHHHHHHHHH-HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH
Confidence            3333333222 122344567789999999999999999999999999999999999888999999999988888777666


Q ss_pred             hhccCCCC
Q 008137          539 LLVPETKG  546 (576)
Q Consensus       539 ~~~~~~~~  546 (576)
                      +..||+++
T Consensus       189 ~~lp~~~~  196 (413)
T PRK15403        189 LAMPETVK  196 (413)
T ss_pred             HhCCCCcc
Confidence            66788653

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.07  E-value=2.7e-09  Score=117.20  Aligned_cols=164  Identities=13%  Similarity=0.064  Sum_probs=109.9

Q ss_pred             HHHHHHHHHHhhccchhhh--------HHHHH-HHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHhcc
Q 008137           48 ISGALLYIKEDFRDVEKKT--------WLQEL-IVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFIGAIIMAIAP  118 (576)
Q Consensus        48 ~~~~~~~i~~~~~~~~~~~--------~~~g~-i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~  118 (576)
                      .....|.+.++.|.+..+.        ..... ...+..++..++.++.+++.||+|||+.++++.++.+++.++.++..
T Consensus       307 ~~~~~p~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~~~  386 (502)
T TIGR00887       307 VNLNQKVILSAIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLGFAY  386 (502)
T ss_pred             cccccHHHHHHHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHH
Confidence            3334677777777654321        00011 23345556677889999999999999999998888777776665432


Q ss_pred             h----HHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCC---------ch
Q 008137          119 Q----PWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFTKAP---------GT  185 (576)
Q Consensus       119 ~----~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~~---------~~  185 (576)
                      +    ...+...-+...++..+..+....+.+|.+|.+.|++++++.+....+|.++++.+.+.+.+..         .+
T Consensus       387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  466 (502)
T TIGR00887       387 NHLSTHGFLAIYVLAQFFANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIW  466 (502)
T ss_pred             HhcchhHHHHHHHHHHHHHhcCCCchhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHHhhhhhcccccccccccccc
Confidence            1    1111111111122222234566777899999999999999999999999999999999887632         12


Q ss_pred             hHHHHHHhHHHHHHHHHHHhhccCCh
Q 008137          186 WRWMLGVAGLPAVVQFGLMMMLPESP  211 (576)
Q Consensus       186 Wr~~f~v~~~~~~~~~~~~~~l~esp  211 (576)
                      +...|++.+++.++..+..+++||+.
T Consensus       467 ~~~~~~i~~~~~~~~~i~~~~lpEt~  492 (502)
T TIGR00887       467 MGHVLEIFALFMFLGILFTLLIPETK  492 (502)
T ss_pred             chHHHHHHHHHHHHHHHHheEeccCC
Confidence            46677887777776666666778874

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.07  E-value=9.3e-09  Score=110.64  Aligned_cols=160  Identities=17%  Similarity=0.089  Sum_probs=103.1

Q ss_pred             hhHHHHHHHHH-HhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHH--h--cchH
Q 008137           46 GVISGALLYIK-EDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFIGAIIMA--I--APQP  120 (576)
Q Consensus        46 ~~~~~~~~~i~-~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~--~--~~~~  120 (576)
                      ..+...+|.+. ++++.+..+.   ++..++..++..+++++.|+++||+|||+.+.++.++.++..+...  .  .++.
T Consensus       260 ~~~~~~lp~~l~~~~g~s~~~~---~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~  336 (432)
T PRK10406        260 YTFTTYMQKYLVNTAGMHANVA---SGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSALQNVSSP  336 (432)
T ss_pred             HHHHHHHHHHHHHhcCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHcCCcH
Confidence            33444566654 5678777666   8888888888889999999999999999988776655433332111  1  2233


Q ss_pred             HHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHH-HHHHHHHHHHHhcCCCchhHHHHHHhHHHHHH
Q 008137          121 WVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITG-GQFLAYLINLAFTKAPGTWRWMLGVAGLPAVV  199 (576)
Q Consensus       121 ~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~-G~~l~~~l~~~l~~~~~~Wr~~f~v~~~~~~~  199 (576)
                      ...+..-++.+.+.+...+....+++|++|++.|+.++|+.+....+ .....|.+.+.+.. .+.|...++..++..++
T Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~~l~~-~g~~~~~~~~~~~~~~i  415 (432)
T PRK10406        337 YAAFGLVMCALLIVSFYTSISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVALSLKS-IGMETAFFWYVTLMAVV  415 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHHHHHH-hCCCcHHHHHHHHHHHH
Confidence            33222223333344444555678889999999999999998765443 23347777776543 34376677766666666


Q ss_pred             HHHHHhhccC
Q 008137          200 QFGLMMMLPE  209 (576)
Q Consensus       200 ~~~~~~~l~e  209 (576)
                      .++..+++++
T Consensus       416 ~~~~~~~l~~  425 (432)
T PRK10406        416 AFLVSLMLHR  425 (432)
T ss_pred             HHHHHHHhhh
Confidence            6555555443

>PRK15075 citrate-proton symporter; Provisional

Probab=99.06  E-value=5.6e-09  Score=112.42  Aligned_cols=140  Identities=16%  Similarity=0.116  Sum_probs=101.9

Q ss_pred             hhhhhhHHHHHHHHHHh-hccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHH----HHh
Q 008137           42 GYDTGVISGALLYIKED-FRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFIGAII----MAI  116 (576)
Q Consensus        42 ~~~~~~~~~~~~~i~~~-~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~----~~~  116 (576)
                      ......+....|.+.++ +|.+..+.   ++....+.++..++.+++|+++||+|||+.+..+.++..+..+.    ...
T Consensus       251 ~~~~~~~~~~~p~~l~~~~g~~~~~~---~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~  327 (434)
T PRK15075        251 TVSFYLITVYTPTFGKTVLHLSAADS---LLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWLVA  327 (434)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHc
Confidence            33344455567776655 78877776   88888889999999999999999999999888765544332221    112


Q ss_pred             cchHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHH-HHHHHHHHHHHHHHHHhcCCCc
Q 008137          117 APQPWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANG-FLITGGQFLAYLINLAFTKAPG  184 (576)
Q Consensus       117 ~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~-~~~~~G~~l~~~l~~~l~~~~~  184 (576)
                      .+++..+.+..++.|++.+...+....++.|.+|++.|+.++++.+ .+..++..++|.+.+.+.+..+
T Consensus       328 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~~g  396 (434)
T PRK15075        328 APSFARMLAVELWLSFLYGSYNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWLIHVTG  396 (434)
T ss_pred             CCchHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHHHHhcC
Confidence            3445455555666777777777777788999999999999999854 4444557789999999888765

>TIGR00898 2A0119 cation transport protein

Probab=99.05  E-value=5.1e-09  Score=114.88  Aligned_cols=137  Identities=16%  Similarity=0.159  Sum_probs=113.8

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHhcchH--HHHHHHHHHHHhhhhhhhhhHHHHHHhcc
Q 008137           72 IVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFIGAIIMAIAPQP--WVIILGRIFVGLGVGMASMTAPLYISEAS  149 (576)
Q Consensus        72 i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~--~~l~~~R~l~G~~~g~~~~~~~~~i~e~~  149 (576)
                      ......+....+.++.+++.||+|||+.+.++.++.+++.++..+.++.  +...+.-++.+++.++.++....+.+|.+
T Consensus       360 ~~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~  439 (505)
T TIGR00898       360 DLFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGKFGITSAFQMVYLYTAELY  439 (505)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            3344566777888999999999999999999999999998888877654  55566667778888888889999999999


Q ss_pred             CcchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHhHHHHHHHHHHHhhccCCh
Q 008137          150 PAKIRGALVSANGFLITGGQFLAYLINLAFTKAPGTWRWMLGVAGLPAVVQFGLMMMLPESP  211 (576)
Q Consensus       150 ~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~Wr~~f~v~~~~~~~~~~~~~~l~esp  211 (576)
                      |++.|+.++|+.+....+|.+++|.+.+ +.+.  ++..++++.+...++..+..+++||+.
T Consensus       440 p~~~r~~~~g~~~~~~~ig~~i~p~i~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~lpet~  498 (505)
T TIGR00898       440 PTVVRNLGVGVCSTMARVGSIISPFLVY-LGEK--WLFLPLVLFGGLALLAGILTLFLPETK  498 (505)
T ss_pred             cHHHHhhhHhHHHHHHHHHHHHHhHHHH-HHHH--HHhhHHHHHHHHHHHHHHHHHcCcCCC
Confidence            9999999999999999999999999988 4332  367788888888888777777888864

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.05  E-value=2e-07  Score=98.96  Aligned_cols=107  Identities=12%  Similarity=0.111  Sum_probs=92.8

Q ss_pred             HHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcc
Q 008137           73 VSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFIGAIIMAIAPQPWVIILGRIFVGLGVGMASMTAPLYISEASPAK  152 (576)
Q Consensus        73 ~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~  152 (576)
                      .++-+..+.+++++.+.+.|+.|.|+.++++.....+-.+..-+ +|-+-+++.-.+.|+|.+..|..--.|++|+.+++
T Consensus        56 ~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~-~N~y~~yfssallG~Gaallw~GqG~ylt~~st~~  134 (461)
T KOG3098|consen   56 QAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFLF-PNSYYLYFSSALLGFGAALLWTGQGGYLTSNSTRE  134 (461)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHh-cchHHHHHHHHHhhhhHHheecccceehhhcCChh
Confidence            77788888899999999999999999999999998877776655 56777889999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 008137          153 IRGALVSANGFLITGGQFLAYLINLAFT  180 (576)
Q Consensus       153 ~R~~~~~~~~~~~~~G~~l~~~l~~~l~  180 (576)
                      .+.+..++.......+.++|..+...+.
T Consensus       135 tie~Nisi~Wai~~~~li~Ggi~l~~~~  162 (461)
T KOG3098|consen  135 TIERNISIFWAIGQSSLIIGGIILFIYF  162 (461)
T ss_pred             hHHHHHHHHHHHHHHHHHhhhHhheeee
Confidence            9999999888888888888766655443

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.03  E-value=3e-08  Score=105.66  Aligned_cols=150  Identities=12%  Similarity=-0.029  Sum_probs=115.5

Q ss_pred             HHHHHHH-HHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHhc-----chHHH
Q 008137           49 SGALLYI-KEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFIGAIIMAIA-----PQPWV  122 (576)
Q Consensus        49 ~~~~~~i-~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~~-----~~~~~  122 (576)
                      ....|.+ .++++.+..+.   ++......++..++.++.|++.||+|+|+.+.++.++..++.++.++.     ++++.
T Consensus       235 ~~~~p~~~~~~~g~~~~~~---g~~~~~~~~~~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  311 (406)
T PRK15402        235 IALSPVILISGEQLSSYEY---GLLQVPVFGALIAGNLTLARLTSRRPLRSLIRMGLWPMVAGLLLAALATVISSHAYLW  311 (406)
T ss_pred             HHHhHHHHHHHhCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHcccccHHH
Confidence            3344554 46678777666   777777888899999999999999999999999888887777766553     35677


Q ss_pred             HHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHhHHHHHHHHH
Q 008137          123 IILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFTKAPGTWRWMLGVAGLPAVVQFG  202 (576)
Q Consensus       123 l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~Wr~~f~v~~~~~~~~~~  202 (576)
                      +++.-++.|++.+...+......... ++++||++.+.++....+|..+|+.+.+.+.+..+ |....+..++.+++.+.
T Consensus       312 ~~~~~~~~g~g~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~  389 (406)
T PRK15402        312 LTAGLSLYAFGIGLANAGLYRLTLFS-SDVSKGTVSAAMGMLSMLIFTVGIELSKHAYLGGG-NGLFNLFNLANGLLWLL  389 (406)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHhhh-ccccccHHHHHHHHHHHHHHHHHHHHHHhcccCCc-hHHHHHHHHHHHHHHHH
Confidence            78889999999998777666655444 45889999999999999999999999999988776 55555555544444433


Q ss_pred             H
Q 008137          203 L  203 (576)
Q Consensus       203 ~  203 (576)
                      .
T Consensus       390 ~  390 (406)
T PRK15402        390 L  390 (406)
T ss_pred             H
Confidence            3

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=99.02  E-value=1.7e-08  Score=105.99  Aligned_cols=168  Identities=19%  Similarity=0.196  Sum_probs=133.8

Q ss_pred             HHHhhhhhhhhHHHHHHHHH-HhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHH
Q 008137           37 GGLLFGYDTGVISGALLYIK-EDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFIGAIIMA  115 (576)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~  115 (576)
                      ..+-+.+|++ +    +.+- .-|+..+......|.+.++..+.-++.-.+..++.+|+|.|+.++++.+++++=.++++
T Consensus       233 ~~~Y~vfdqq-f----~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~  307 (412)
T PF01306_consen  233 AAIYDVFDQQ-F----PIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSG  307 (412)
T ss_dssp             HHHHHHHHHH-H----HHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHH-H----HHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHh
Confidence            3444556655 2    3333 33333333334469999999999999999999999999999999999999999999999


Q ss_pred             hcchHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHH-HHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHhH
Q 008137          116 IAPQPWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSA-NGFLITGGQFLAYLINLAFTKAPGTWRWMLGVAG  194 (576)
Q Consensus       116 ~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~-~~~~~~~G~~l~~~l~~~l~~~~~~Wr~~f~v~~  194 (576)
                      ++++++.+.+.+.+.|+-.+........|+++.+|+|..+....+ .+...++|.++...++|.+.+..| .+..|++.+
T Consensus       308 ~~~~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G-~~~tylimg  386 (412)
T PF01306_consen  308 FATNPWVISLIKLLHALEFPLLLVAAFKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRIG-FQHTYLIMG  386 (412)
T ss_dssp             T--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
T ss_pred             hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcC-cHHHHHHHH
Confidence            999999999999999999999999999999999999888777776 578899999999999999999887 899999988


Q ss_pred             HHHHHHHHH-HhhccCC
Q 008137          195 LPAVVQFGL-MMMLPES  210 (576)
Q Consensus       195 ~~~~~~~~~-~~~l~es  210 (576)
                      .+.++..+. .+.++++
T Consensus       387 ~iv~~~~li~~f~l~~~  403 (412)
T PF01306_consen  387 LIVLPFTLISAFTLKKD  403 (412)
T ss_dssp             HHHHHHHHHHHHHS--S
T ss_pred             HHHHHHHHHheeeecCC
Confidence            877665555 5556544

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=99.01  E-value=3.5e-09  Score=115.32  Aligned_cols=177  Identities=15%  Similarity=0.113  Sum_probs=161.3

Q ss_pred             HHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccC--chHHHHHHHHH
Q 008137           29 KLALSAGIGGLLFGYDTGVISGALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFG--RKISLLGADVL  106 (576)
Q Consensus        29 ~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~G--rr~~~~~~~~~  106 (576)
                      +.....+++..+..+...+....+|.+.++.+.++.+.   ..+.++..+...++.++.|+++|+..  ++.++.+++++
T Consensus       298 ~~fl~~~~~~~~~~~g~~~p~~~l~~~~~~~g~~~~~a---a~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~  374 (509)
T KOG2504|consen  298 PKFLLLALSNLFAYLGFNVPFVYLPSYAKSLGLSSNDA---AFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLI  374 (509)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhh---HHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHH
Confidence            34556667777788888888889999999999998888   99999999999999999999999988  56788889999


Q ss_pred             HHHHHHHHHhcchHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchh
Q 008137          107 FFIGAIIMAIAPQPWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFTKAPGTW  186 (576)
Q Consensus       107 ~~i~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~W  186 (576)
                      .+++.+.+.++++++.++..-.+.|++.|.........+.|..+.++-..+.|+.....+++.++||++++.+.+..++|
T Consensus       375 ~gl~~~~~p~~~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y  454 (509)
T KOG2504|consen  375 AGLARLFLPFATTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDITGNY  454 (509)
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeeccCCe
Confidence            99999999999999999999999999999999988899999999999999999999999999999999999999988889


Q ss_pred             HHHHHHhHHHHHHHHHHHhhcc
Q 008137          187 RWMLGVAGLPAVVQFGLMMMLP  208 (576)
Q Consensus       187 r~~f~v~~~~~~~~~~~~~~l~  208 (576)
                      ...|+..++..++...+++..+
T Consensus       455 ~~~f~~~g~~~~~s~~~~~~~~  476 (509)
T KOG2504|consen  455 DHAFYFCGLCFLLSAVLLLILR  476 (509)
T ss_pred             eeehhhcChHHHHHHHHHHHhH
Confidence            9999999999888887777666

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.00  E-value=3.7e-09  Score=114.78  Aligned_cols=149  Identities=13%  Similarity=-0.071  Sum_probs=113.1

Q ss_pred             CchhHHHHHHHHHhHHHHHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccccccCCCCCCCC
Q 008137          310 ASKSTALALSLVTSGLNALGSIVSMAFVDKYGRRRLMIVSMFGLSSCLVALAVVFFQAAIHAPTVSQIESSHFGGNNTCP  389 (576)
Q Consensus       310 ~~~~~~~~~~~~~~~~~~ig~~~~g~l~dk~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  389 (576)
                      .+....+.+.....++.+++.++.|+++||+|||+.+..+.++..++.++........                      
T Consensus        73 ~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~----------------------  130 (465)
T TIGR00894        73 WSGALQGLILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGG----------------------  130 (465)
T ss_pred             CCHHHhhHHHHHHHHHHHHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcC----------------------
Confidence            3667778888888999999999999999999999999888877776665544332100                      


Q ss_pred             cccccCCCCcccccccccccccccCCCCCCCCCCcccccccccccccccccccccccCCCCcchhHHHHHHHHHHHHhcC
Q 008137          390 AYITDGNAKSWNCMDCLKAKCGFCAHKGNEYLPGACLIDEKSTDTLCSDEHRTYFISGCPSSFGWLAVVFLGAYIITYSP  469 (576)
Q Consensus       390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~  469 (576)
                                                                                     .+..++.-++.+ ....
T Consensus       131 ---------------------------------------------------------------~~~l~~~r~~~G-~~~~  146 (465)
T TIGR00894       131 ---------------------------------------------------------------IALVVFCRVIQG-LAQG  146 (465)
T ss_pred             ---------------------------------------------------------------chHHHHHHHHHH-Hhcc
Confidence                                                                           022233333333 3333


Q ss_pred             CcccccchhccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHh-hccchhhHHHHHHHHHHHHHHHhhccCC
Q 008137          470 GMGTAPWIVNSEIYPLRYRGVGGGIAAVSNWTSNLIVSLTFLTLTEA-LGSAGTFLLFAGFSLLGLVAIYLLVPET  544 (576)
Q Consensus       470 ~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~g~~~~~~~~~~l~~~-~g~~~~~~~~~~~~~i~~~~~~~~~~~~  544 (576)
                      ...+....+.+|.+|++.|++++|+.+....+|.++++.+.+.+.+. .||+..|++.+++.++..++.+.+.++.
T Consensus       147 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~  222 (465)
T TIGR00894       147 SVSPATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVFPADD  222 (465)
T ss_pred             cchhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHHHhcCC
Confidence            44566667889999999999999999999999999999999999988 4999999999888877766666655543

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.00  E-value=3.2e-08  Score=105.33  Aligned_cols=148  Identities=17%  Similarity=0.169  Sum_probs=107.7

Q ss_pred             HHHHHhhccchhhhHHHHHHHHHH-HHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHH---Hhc-chHHHHHHHH
Q 008137           53 LYIKEDFRDVEKKTWLQELIVSMA-VAGAIFGAGFGGWINDRFGRKISLLGADVLFFIGAIIM---AIA-PQPWVIILGR  127 (576)
Q Consensus        53 ~~i~~~~~~~~~~~~~~g~i~s~~-~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~---~~~-~~~~~l~~~R  127 (576)
                      +.+.+++|.+..+.   +++.+.. .++..++.+++|++.||+|+|+.+.++.++..+..+..   ++. ++.+.+++.-
T Consensus       234 ~~l~~~~G~~~~~~---g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~  310 (402)
T PRK11902        234 TFLIRGAGFSAGEV---GIVNKTLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSNLGYWVLAVTPKHLWTMALAI  310 (402)
T ss_pred             HHHHHhcCCCHHHH---HHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHH
Confidence            45667788887777   8887654 55789999999999999999998877777666554433   444 4556555554


Q ss_pred             ----HHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHhHHHHHHHHHH
Q 008137          128 ----IFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFTKAPGTWRWMLGVAGLPAVVQFGL  203 (576)
Q Consensus       128 ----~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~Wr~~f~v~~~~~~~~~~~  203 (576)
                          +..|++.+...+....++.+.+|.+++    +..+...++|.+++.+++|.+.+..| |+..|.+.++++++.++.
T Consensus       311 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~G~l~~~~G-~~~~f~~~~~~~~~~~~~  385 (402)
T PRK11902        311 GIENLCGGMGTAAFVALLMALCNRSFSATQY----ALLSALASVGRVYVGPTSGYLVEAYG-WPGFYLMTVVIALPGLAL  385 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCCcHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhC-hHHHHHHHHHHHHHHHHH
Confidence                455666666677777788888776654    44555556777766778999988887 999999999888887666


Q ss_pred             Hhhcc
Q 008137          204 MMMLP  208 (576)
Q Consensus       204 ~~~l~  208 (576)
                      .+..+
T Consensus       386 ~~~~~  390 (402)
T PRK11902        386 LWLMR  390 (402)
T ss_pred             HHHHh
Confidence            55444

>PRK11043 putative transporter; Provisional

Probab=99.00  E-value=1.1e-08  Score=108.79  Aligned_cols=154  Identities=16%  Similarity=0.040  Sum_probs=111.0

Q ss_pred             hHHHHHhhcCCchhHHHHHHHHHhHHHHHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccccc
Q 008137          300 SPTIVQFAGFASKSTALALSLVTSGLNALGSIVSMAFVDKYGRRRLMIVSMFGLSSCLVALAVVFFQAAIHAPTVSQIES  379 (576)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dk~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  379 (576)
                      .|.+.++.+. +..+.+.......++..++.++.|+++||+|||+.+..+..+..++.++..+...              
T Consensus        29 ~~~i~~~~~~-s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~--------------   93 (401)
T PRK11043         29 FKAIQADLQT-SASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWVES--------------   93 (401)
T ss_pred             HHHHHHHHCC-CHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHhcC--------------
Confidence            3444555555 7778888888889999999999999999999999998888777766665544311              


Q ss_pred             ccCCCCCCCCcccccCCCCcccccccccccccccCCCCCCCCCCcccccccccccccccccccccccCCCCcchhHHHHH
Q 008137          380 SHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAHKGNEYLPGACLIDEKSTDTLCSDEHRTYFISGCPSSFGWLAVVF  459 (576)
Q Consensus       380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~  459 (576)
                                                                                               .+..++.
T Consensus        94 -------------------------------------------------------------------------~~~l~~~  100 (401)
T PRK11043         94 -------------------------------------------------------------------------AAQLLVL  100 (401)
T ss_pred             -------------------------------------------------------------------------HHHHHHH
Confidence                                                                                     0222222


Q ss_pred             HHHHHHHhcCCcccccchhccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHh
Q 008137          460 LGAYIITYSPGMGTAPWIVNSEIYPLRYRGVGGGIAAVSNWTSNLIVSLTFLTLTEALGSAGTFLLFAGFSLLGLVAIYL  539 (576)
Q Consensus       460 ~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~  539 (576)
                      ..+.+.+.. ...+....+..|.+|++.++...+..+....++..++|.+.+.+.+..||+..|++.+++.++..+..++
T Consensus       101 ~~l~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~  179 (401)
T PRK11043        101 RFVQAVGVC-SAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFATLFAITLLLILPTLR  179 (401)
T ss_pred             HHHHHhhhH-HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHH
Confidence            222222221 1122334567889999888888898888889999999999999999999999998888887776665544


Q ss_pred             hcc
Q 008137          540 LVP  542 (576)
Q Consensus       540 ~~~  542 (576)
                      +.+
T Consensus       180 ~~~  182 (401)
T PRK11043        180 LKP  182 (401)
T ss_pred             cCC
Confidence            433

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=98.99  E-value=1.4e-08  Score=122.46  Aligned_cols=148  Identities=15%  Similarity=0.171  Sum_probs=123.6

Q ss_pred             HHHHHH-HHHhhccchh-hhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHhcchHHHHHHH
Q 008137           49 SGALLY-IKEDFRDVEK-KTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFIGAIIMAIAPQPWVIILG  126 (576)
Q Consensus        49 ~~~~~~-i~~~~~~~~~-~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~  126 (576)
                      ...+|. +.+.++.+.. ..   +++.+...++..++++++|++.||+++|+.+.++.++.+++.++..+..+.+.++++
T Consensus       252 ~~~~~~~~~~~~g~s~~~~~---g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  328 (1146)
T PRK08633        252 QANFPAYAKEVLGLDNTFQV---QYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTAPSLASVLVL  328 (1146)
T ss_pred             HHhhHHHHHHHhCCCcHHHH---HHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence            334444 4566787776 66   999999999999999999999999999999999999888888888888899999999


Q ss_pred             HHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHhHHHHHH
Q 008137          127 RIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFTKAPGTWRWMLGVAGLPAVV  199 (576)
Q Consensus       127 R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~Wr~~f~v~~~~~~~  199 (576)
                      .++.|++.++..+...+++.+..|++.||+++++.++...+|.++++.+++.+.....++...|++.+.+.++
T Consensus       329 ~~~~g~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  401 (1146)
T PRK08633        329 FFLFGFSAGLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFSGLGLSPAGLFYLIALVTLI  401 (1146)
T ss_pred             HHHHHHHHHHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999888888877654322366666665554433

>TIGR00896 CynX cyanate transporter

Probab=98.99  E-value=6.2e-09  Score=108.73  Aligned_cols=139  Identities=18%  Similarity=0.062  Sum_probs=110.5

Q ss_pred             hhHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhcc-CchHHHHHHHHHHHHHHHHHHhcchHHHHH
Q 008137           46 GVISGALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRF-GRKISLLGADVLFFIGAIIMAIAPQPWVII  124 (576)
Q Consensus        46 ~~~~~~~~~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~-Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~  124 (576)
                      ......+|.+.++.+.+..+.   +.+.+...++..+++++.|++.||+ +||+.+.++.++.+++.+...+.++.....
T Consensus       214 ~~~~~~lp~~~~~~g~~~~~~---g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (355)
T TIGR00896       214 YSLIGWLPAILISHGASAATA---GSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLFAPMHGLWA  290 (355)
T ss_pred             HHHHHHHHHHHHHcCCCHHHH---HHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence            344456777778888877776   9999999999999999999999999 567777788888888877777765433332


Q ss_pred             HHHHHHHhhhhhhhhhHHHHHHhccC-cchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHH
Q 008137          125 LGRIFVGLGVGMASMTAPLYISEASP-AKIRGALVSANGFLITGGQFLAYLINLAFTKAPGTWRW  188 (576)
Q Consensus       125 ~~R~l~G~~~g~~~~~~~~~i~e~~~-~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~Wr~  188 (576)
                       .-++.|++.|...+...+.+.+..+ +++++...++.+....+|..++|.+.+.+.+..++|.+
T Consensus       291 -~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~~g~~~~  354 (355)
T TIGR00896       291 -WALVLGLGQGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDISGNWLM  354 (355)
T ss_pred             -HHHHHHHhhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Confidence             4578899999999888787766554 56678889998888889999999999999887765654

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=98.97  E-value=4.6e-08  Score=103.81  Aligned_cols=172  Identities=20%  Similarity=0.241  Sum_probs=135.2

Q ss_pred             HHHHhhhhhhhhHHHHHHHHHHhhc-cchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHH
Q 008137           36 IGGLLFGYDTGVISGALLYIKEDFR-DVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFIGAIIM  114 (576)
Q Consensus        36 l~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~  114 (576)
                      +..++.+.....+....+...++.+ .+....   +.+.++..++=...-.+.+++..|+|.|+++.++.+.+.+=..+.
T Consensus       214 l~~~l~~~~~~~~~~f~~~yl~~~gg~~~~~~---g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~  290 (400)
T PF03825_consen  214 LAAFLIGISHAAYYTFFSIYLQELGGYSGSTI---GILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLY  290 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcccchhhHH---HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH
Confidence            3445566666777777787888888 455555   777788888888888999999999999999999999999988888


Q ss_pred             Hhc-chHHHHHH----HHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHH-HHHHHHHHHHHHHHhcCCCc----
Q 008137          115 AIA-PQPWVIIL----GRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFL-ITGGQFLAYLINLAFTKAPG----  184 (576)
Q Consensus       115 ~~~-~~~~~l~~----~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~-~~~G~~l~~~l~~~l~~~~~----  184 (576)
                      +.. ++.+...+    ...++|+..|..+.++..|+.+..|++.|++++++++.. .++|..+|..++|++.+..+    
T Consensus       291 a~~~~~~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~  370 (400)
T PF03825_consen  291 AYFSDPWPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARGM  370 (400)
T ss_pred             HHhcCCcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhh
Confidence            887 45444333    345799999999999999999999999999999998765 68999999999999988654    


Q ss_pred             -hhHHHHHHhHHHHHHHHHH-HhhccCC
Q 008137          185 -TWRWMLGVAGLPAVVQFGL-MMMLPES  210 (576)
Q Consensus       185 -~Wr~~f~v~~~~~~~~~~~-~~~l~es  210 (576)
                       .|...+.+.+.+.++..++ +++++|+
T Consensus       371 ~~~~~~~~v~a~~~~~~~~~f~~~fk~~  398 (400)
T PF03825_consen  371 FDWSAVFLVFAVMALVILVLFVILFKPK  398 (400)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence             2556666766666665555 4445543

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=98.96  E-value=3.5e-08  Score=107.83  Aligned_cols=159  Identities=14%  Similarity=0.035  Sum_probs=113.8

Q ss_pred             HHHhhHHHHhhhHHHHHhhcCCchhHHHHHHHHHhHHHHHHHHHHHHhhcc-cCChHHHHHHHHHHHHHHHHHHHHHHHh
Q 008137          289 QFVGINTVMYYSPTIVQFAGFASKSTALALSLVTSGLNALGSIVSMAFVDK-YGRRRLMIVSMFGLSSCLVALAVVFFQA  367 (576)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dk-~grr~~~~~~~~~~~~~~~~~~~~~~~~  367 (576)
                      .-.+++....+.+.|+++..+.+..++............+..+++|+++|| +|||+++..+.++..++.+++.+.... 
T Consensus        26 er~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~~~~~~~~~~-  104 (489)
T PRK10207         26 ERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIGYFMTGMSLLK-  104 (489)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHHHHHHHHHhccc-
Confidence            444556666677777766555466677666666666677777899999999 999999999999999888777654210 


Q ss_pred             hhcCCCccccccccCCCCCCCCcccccCCCCcccccccccccccccCCCCCCCCCCcccccccccccccccccccccccC
Q 008137          368 AIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAHKGNEYLPGACLIDEKSTDTLCSDEHRTYFISG  447 (576)
Q Consensus       368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  447 (576)
                                                                                                      
T Consensus       105 --------------------------------------------------------------------------------  104 (489)
T PRK10207        105 --------------------------------------------------------------------------------  104 (489)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCcchhHHHHHHHHHHHHhcCCcccccchhccccccccc--cccchhHHHHHHHHHHHHHHHHHHHHHHhhccchhhHH
Q 008137          448 CPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEIYPLRY--RGVGGGIAAVSNWTSNLIVSLTFLTLTEALGSAGTFLL  525 (576)
Q Consensus       448 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~--rg~~~g~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~  525 (576)
                           .....+...+.+.+.+ ...|...++..|.+|++.  |+.+.++.....++|.+++|.+.+++.++.||+..|++
T Consensus       105 -----~~ll~~~~~l~~ig~g-~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~gw~~~F~i  178 (489)
T PRK10207        105 -----PDLIFIALGTIAVGNG-LFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADKFGYSVTYNL  178 (489)
T ss_pred             -----hhHHHHHHHHHHhccc-cccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHH
Confidence                 0112223333332222 334555688899998774  57789999999999999999999999999999999888


Q ss_pred             HHHHHHHHH
Q 008137          526 FAGFSLLGL  534 (576)
Q Consensus       526 ~~~~~~i~~  534 (576)
                      .++..+++.
T Consensus       179 ~~i~~~~~~  187 (489)
T PRK10207        179 CGAGLIIAL  187 (489)
T ss_pred             HHHHHHHHH
Confidence            655333333

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=98.96  E-value=2e-08  Score=103.67  Aligned_cols=178  Identities=17%  Similarity=0.179  Sum_probs=148.0

Q ss_pred             HHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHH
Q 008137           29 KLALSAGIGGLLFGYDTGVISGALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFF  108 (576)
Q Consensus        29 ~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~  108 (576)
                      .+.++++-..+.++.+. .+...-..-..++|++..+.   .++.-...+..++|++++|++.||+|.|+++.++++++.
T Consensus       254 i~~FLiA~~~~~DGv~t-il~~~~~fg~~~~gls~~~l---ll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~  329 (438)
T COG2270         254 LVLFLIARFFYIDGVNT-ILAMGGVFGAADLGLSSTEL---LLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILS  329 (438)
T ss_pred             hHHHHHHHHHHHhhHHH-HHHHHHHHHHHHcCccHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHH
Confidence            34444444444455542 23333333445999999998   778888888999999999999999999999999999999


Q ss_pred             HHHHHHHhcchHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHH
Q 008137          109 IGAIIMAIAPQPWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFTKAPGTWRW  188 (576)
Q Consensus       109 i~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~Wr~  188 (576)
                      +.++..-+......+.+.-.+.|...|+.+..+.+|.++..|+++-++.+|+++...-.+.++||.+-+.+.+..++-|.
T Consensus       330 ~~~~~~~~~~~~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~  409 (438)
T COG2270         330 IAALYLIFLEGELDFWILGLLVGTSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGSSRA  409 (438)
T ss_pred             HHHHHHHHccccHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcchhh
Confidence            99998888888888888889999999999999999999999999999999999999999999999999999998888888


Q ss_pred             HHHHhHHHHHHHHHHHhhccCC
Q 008137          189 MLGVAGLPAVVQFGLMMMLPES  210 (576)
Q Consensus       189 ~f~v~~~~~~~~~~~~~~l~es  210 (576)
                      -+....++.++.++..+..|+.
T Consensus       410 g~~~i~vll~iGl~~L~~v~~~  431 (438)
T COG2270         410 GVLSIIVLLLIGLLLLLRVKVP  431 (438)
T ss_pred             HHHHHHHHHHhhHhhEEeecCC
Confidence            8888777777777766666654

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=98.96  E-value=3.6e-08  Score=97.01  Aligned_cols=178  Identities=22%  Similarity=0.200  Sum_probs=135.2

Q ss_pred             HHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHH
Q 008137           27 IMKLALSAGIGGLLFGYDTGVISGALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVL  106 (576)
Q Consensus        27 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~  106 (576)
                      ||..+..........+ ....++..-|.+++.+|.+.++.   ..+.++..+|..+| ++.|.+.|++|.+.++++|.+.
T Consensus         1 rW~~l~a~~~v~~~~G-t~Y~Fs~yS~~Lk~~l~~sq~~l---~~l~~~~~~G~~~G-~~~G~l~d~~gp~~~l~iG~~~   75 (250)
T PF06813_consen    1 RWLSLVASIWVQLCSG-TTYTFSAYSPQLKSRLGYSQSQL---NTLSTAGDIGSYFG-ILAGLLYDRFGPWVVLLIGAVL   75 (250)
T ss_pred             ChhhHHHHHHHHHhcC-cccchhhhhHHHHHHhCCCHHHH---HHHHHHHHHHhhcc-HHHHHHHHhcchHHHHHHHHHH
Confidence            3554444444444444 45667777889999999999998   89999999999875 8899999999999999999999


Q ss_pred             HHHHHHHHHhc-------chHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 008137          107 FFIGAIIMAIA-------PQPWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAF  179 (576)
Q Consensus       107 ~~i~~~~~~~~-------~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l  179 (576)
                      ..+|..+..++       .++|.+.+..++.|.+.+.....+.....+.|| ++||.+.|+.-...+++..+-..+...+
T Consensus        76 ~~~GY~~~~l~~~~~i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t~i~~~~  154 (250)
T PF06813_consen   76 GFVGYGLLWLAVSGRIPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFTQIYSAF  154 (250)
T ss_pred             HHHHHHHHHHHHhCccCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCc-cccCceehhhhHHHHhHHHHHHHHHHHH
Confidence            99998876653       367888888899988887777777777788997 5799999999999999887766666665


Q ss_pred             cCCCchhHHHHHHhHHHHHHHHHHHhhccCCh
Q 008137          180 TKAPGTWRWMLGVAGLPAVVQFGLMMMLPESP  211 (576)
Q Consensus       180 ~~~~~~Wr~~f~v~~~~~~~~~~~~~~l~esp  211 (576)
                      .+... -+..+.+...+.++.++..++++..|
T Consensus       155 f~~~~-~~fll~la~~~~~v~l~~~~~vr~~~  185 (250)
T PF06813_consen  155 FGDDP-SSFLLFLAVLPAVVCLVAMFFVRPVP  185 (250)
T ss_pred             cCCCh-HHHHHHHHHHHHHHHHHHhhheeccC
Confidence            55432 55555555555666555555554443

>TIGR01272 gluP glucose/galactose transporter

Probab=98.94  E-value=6.7e-08  Score=99.27  Aligned_cols=156  Identities=13%  Similarity=0.014  Sum_probs=118.1

Q ss_pred             HHHHHHhhhhhhhhHHHHHHHHHHh---hccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHH
Q 008137           34 AGIGGLLFGYDTGVISGALLYIKED---FRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFIG  110 (576)
Q Consensus        34 ~~l~~~~~~~~~~~~~~~~~~i~~~---~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~  110 (576)
                      ..++.++.......+....+.+.++   ++.++.+.   ++..+.+..+..+|.++.+++.||+|+|+.+.++..+..++
T Consensus       145 ~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a---~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~  221 (310)
T TIGR01272       145 GALGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQA---AHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLL  221 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence            3444444443444555555665543   57777777   99999999999999999999999999999998888888887


Q ss_pred             HHHHHhcchHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHH
Q 008137          111 AIIMAIAPQPWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFTKAPGTWRWML  190 (576)
Q Consensus       111 ~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~Wr~~f  190 (576)
                      .++....++...+ ..-++.|++.+..+|...+...+..|++ .+.+.++. ....+|..+.|++.|.+.+..+ .++.|
T Consensus       222 ~~l~~~~~~~~~~-~~~~l~g~~~s~i~P~~~s~a~~~~~~~-~~~asai~-~~~~~Gg~i~P~l~G~lad~~g-~~~a~  297 (310)
T TIGR01272       222 SIGAALTHGYVAM-WFVLALGLFNSIMFPTIFSLALNALGRH-TSQGSGIL-CLAIVGGAIVPLLQGSLADCLG-IQLAF  297 (310)
T ss_pred             HHHHHHcCCHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhhhh-hhhhHHHH-HHHHhcchHHHHHHHHHHHhcc-chHHH
Confidence            7766665554333 3556899999999999999998888754 45666665 5666899999999999988776 88888


Q ss_pred             HHhHHH
Q 008137          191 GVAGLP  196 (576)
Q Consensus       191 ~v~~~~  196 (576)
                      ++..+.
T Consensus       298 ~v~~~~  303 (310)
T TIGR01272       298 ALPVPC  303 (310)
T ss_pred             HHHHHH
Confidence            754443

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=98.93  E-value=6e-09  Score=92.19  Aligned_cols=135  Identities=21%  Similarity=0.181  Sum_probs=101.6

Q ss_pred             HhHHHHHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccccccCCCCCCCCcccccCCCCccc
Q 008137          322 TSGLNALGSIVSMAFVDKYGRRRLMIVSMFGLSSCLVALAVVFFQAAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWN  401 (576)
Q Consensus       322 ~~~~~~ig~~~~g~l~dk~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  401 (576)
                      ..++.+++.++.+++.||+|||+.+..+.....++.+.+.....                                    
T Consensus         7 ~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------   50 (141)
T TIGR00880         7 YALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSN------------------------------------   50 (141)
T ss_pred             ehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhcc------------------------------------
Confidence            45667888999999999999999998887777766665443211                                    


Q ss_pred             ccccccccccccCCCCCCCCCCcccccccccccccccccccccccCCCCcchhHHHHHHHHHHHHhcCCcccccchhccc
Q 008137          402 CMDCLKAKCGFCAHKGNEYLPGACLIDEKSTDTLCSDEHRTYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSE  481 (576)
Q Consensus       402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e  481 (576)
                                                                         .+...+...+.+.+.+ ...+....+..|
T Consensus        51 ---------------------------------------------------~~~~~~~~~~~g~~~~-~~~~~~~~~~~~   78 (141)
T TIGR00880        51 ---------------------------------------------------ITVLIIARFLQGFGAA-FALVAGAALIAD   78 (141)
T ss_pred             ---------------------------------------------------HHHHHHHHHHHHHHHH-HHHHhHHHHHHH
Confidence                                                               1222333333333332 233456678899


Q ss_pred             cccccccccchhHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHhhccCC
Q 008137          482 IYPLRYRGVGGGIAAVSNWTSNLIVSLTFLTLTEALGSAGTFLLFAGFSLLGLVAIYLLVPET  544 (576)
Q Consensus       482 ~~p~~~rg~~~g~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~  544 (576)
                      .+|++.|++..++.+....++..+++.+.+.+.+..+++..+++.+.+.++..+..+++.||+
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (141)
T TIGR00880        79 IYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAFLLPET  141 (141)
T ss_pred             HCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhhcCCCC
Confidence            999999999999999999999999999999999988888888888888888777776666653

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=98.93  E-value=6.4e-08  Score=96.44  Aligned_cols=161  Identities=27%  Similarity=0.360  Sum_probs=130.6

Q ss_pred             HHHhhhhhhhhHHHHHHHHHHhhccchh--hhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHH
Q 008137           37 GGLLFGYDTGVISGALLYIKEDFRDVEK--KTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFIGAIIM  114 (576)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~  114 (576)
                      ..+...++........+.+..+++.+..  ..   +++.+.+.++..+++++.|++.||+|||+.+..+.....++.++.
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~   86 (338)
T COG0477          10 AALLLGLDLGLLSPALPLLLSTLSLSSGRLLY---GLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLL   86 (338)
T ss_pred             HHHHHHHhcchHHHHHHHHHHHcCCCchhHHH---HHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHH
Confidence            3344446777777788888888776553  45   899999999999999999999999999988888887767777788


Q ss_pred             Hhcch--HHHHHHHHHHHHhhhhhhhhhHHHHHHhccCc-chhhHHHHHHHH-HHHHHHHHHHHHHHHhcCC-CchhHHH
Q 008137          115 AIAPQ--PWVIILGRIFVGLGVGMASMTAPLYISEASPA-KIRGALVSANGF-LITGGQFLAYLINLAFTKA-PGTWRWM  189 (576)
Q Consensus       115 ~~~~~--~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~-~~R~~~~~~~~~-~~~~G~~l~~~l~~~l~~~-~~~Wr~~  189 (576)
                      ++..+  .+.+++.|+++|++.+...+....++.|++|+ ++|+...+.... ...+|..+++.+++.+... ..+||+.
T Consensus        87 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (338)
T COG0477          87 ALAPNVGLALLLILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGALLWGWRAA  166 (338)
T ss_pred             HhCccchHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence            88776  99999999999999999999999999999988 678999998888 5888888888777766543 2249997


Q ss_pred             HHHhHHHHHHH
Q 008137          190 LGVAGLPAVVQ  200 (576)
Q Consensus       190 f~v~~~~~~~~  200 (576)
                      |.+........
T Consensus       167 ~~~~~~~~~~~  177 (338)
T COG0477         167 FLLAALLGLLL  177 (338)
T ss_pred             HHHHHHHHHHH
Confidence            77766655443

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=98.92  E-value=3.4e-08  Score=119.18  Aligned_cols=152  Identities=13%  Similarity=0.136  Sum_probs=121.7

Q ss_pred             hhhHHHHHHHHHH-hhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHhc------
Q 008137           45 TGVISGALLYIKE-DFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFIGAIIMAIA------  117 (576)
Q Consensus        45 ~~~~~~~~~~i~~-~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~~------  117 (576)
                      ...+...+|.+.+ .++.+....   |++.+.+.++..+++++.|++.|+.++++.+..+.++.+++.+..++.      
T Consensus       241 ~~~~~~~~p~~~~~~~g~~~~~~---g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  317 (1140)
T PRK06814        241 GAVVLSQLPLLAKETLGGDENVA---TLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLFGLDLAFASSSVPA  317 (1140)
T ss_pred             HHHHHHHhHHHHHHHcCCchHHH---HHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHHHHhccccccc
Confidence            3344445666554 467777777   999999999999999999999999888777666666666665545443      


Q ss_pred             --------------chHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 008137          118 --------------PQPWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFTKAP  183 (576)
Q Consensus       118 --------------~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~~  183 (576)
                                    ++.+.+++..++.|++.+...+...+++.+.+|+++||+++|.+++...+|..+++++.+.+....
T Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~~~  397 (1140)
T PRK06814        318 EPAQLKSILVFLSKRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQALG  397 (1140)
T ss_pred             ccccccchhhhhcccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence                          677888889999999999999999999999999999999999999999999999999999887543


Q ss_pred             chhHHHHHHhHHHHHH
Q 008137          184 GTWRWMLGVAGLPAVV  199 (576)
Q Consensus       184 ~~Wr~~f~v~~~~~~~  199 (576)
                      .+....+++.+++.++
T Consensus       398 ~~~~~~~~~~~~~~~~  413 (1140)
T PRK06814        398 FSIPWIILFIALANLI  413 (1140)
T ss_pred             cCHHHHHHHHHHHHHH
Confidence            3477777665554443

>TIGR00901 2A0125 AmpG-related permease

Probab=98.90  E-value=4.9e-08  Score=101.93  Aligned_cols=123  Identities=15%  Similarity=0.162  Sum_probs=99.3

Q ss_pred             hhhhhhhHHHHHHHHHHhhccchhhhHHHHHHHHHHH-HHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHhc--
Q 008137           41 FGYDTGVISGALLYIKEDFRDVEKKTWLQELIVSMAV-AGAIFGAGFGGWINDRFGRKISLLGADVLFFIGAIIMAIA--  117 (576)
Q Consensus        41 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~i~s~~~-~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~~--  117 (576)
                      ............|.+.+++|.+..+.   +.+.++.. ++..++.+++|++.||+|||+.+.++.++..++..+..+.  
T Consensus       221 ~~~~~~~~~~~~~~~l~~~g~~~~~~---g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~  297 (356)
T TIGR00901       221 YKLGDSAATVLTTLFLLDMGFSKEEI---ALVAKINGLLGAILGGLIGGIIMQPLNILYALLLFGIVQALTNAGFVWLAS  297 (356)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCHHHH---HHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            33444445566777777788877777   77776655 6788999999999999999999888888887776655443  


Q ss_pred             ---------chHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHH
Q 008137          118 ---------PQPWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLIT  166 (576)
Q Consensus       118 ---------~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~  166 (576)
                               ++.+.+....++.|++.+...+...+++.|.+|+++||+.+++.++..+
T Consensus       298 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~  355 (356)
T TIGR00901       298 NGHHDGITFPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKFGATQMALLSSLSA  355 (356)
T ss_pred             cCcccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence                     4567788889999999999999999999999999999999999887654

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=98.90  E-value=3.4e-08  Score=101.89  Aligned_cols=178  Identities=17%  Similarity=0.119  Sum_probs=134.6

Q ss_pred             hHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcCCchhHHHHHHHHHhHHHHHHHHHHHHhhcccCChHHHHHHHHHHHHHH
Q 008137          278 LYAGVTVQVAQQFVGINTVMYYSPTIVQFAGFASKSTALALSLVTSGLNALGSIVSMAFVDKYGRRRLMIVSMFGLSSCL  357 (576)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dk~grr~~~~~~~~~~~~~~  357 (576)
                      .+..-...+...+..|..+....+.+-++.+. +..+.+++..++.+.+.+.++..|++.||+|.|+..+.+.+++.+-.
T Consensus        15 ~L~~S~~af~v~F~VW~l~s~l~~~i~~~~~L-S~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~~IP~   93 (417)
T COG2223          15 NLWLSTLAFDVGFMVWTLFSPLGVFIKSDFGL-SEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLLIPC   93 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhccccCC-CHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHHHHHH
Confidence            34445555666666777777777777666666 77888888899999999999999999999999999999998888887


Q ss_pred             HHHHHHHHHhhhcCCCccccccccCCCCCCCCcccccCCCCcccccccccccccccCCCCCCCCCCcccccccccccccc
Q 008137          358 VALAVVFFQAAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAHKGNEYLPGACLIDEKSTDTLCS  437 (576)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  437 (576)
                      +.+.+.....                                                                      
T Consensus        94 ~~~~~a~~~~----------------------------------------------------------------------  103 (417)
T COG2223          94 LGLAFAVTYP----------------------------------------------------------------------  103 (417)
T ss_pred             HHHHHHccCC----------------------------------------------------------------------
Confidence            7777664311                                                                      


Q ss_pred             cccccccccCCCCcchhHHHHHHHHHHHHhcCCcccccchhccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHhh
Q 008137          438 DEHRTYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEIYPLRYRGVGGGIAAVSNWTSNLIVSLTFLTLTEAL  517 (576)
Q Consensus       438 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~g~~~~~~~~~~l~~~~  517 (576)
                                   ++ |..+ .+.++ .+...+...+....+++-||++.+|.++|++. .+++|..+...+.+.+....
T Consensus       104 -------------~~-~~ll-~~gll-~G~~GasFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~  166 (417)
T COG2223         104 -------------ST-WQLL-VIGLL-LGLAGASFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVAF  166 (417)
T ss_pred             -------------ch-HHHH-HHHHH-HhcccceehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHHH
Confidence                         01 2222 22222 22222334455678899999999999999999 99999999999999999998


Q ss_pred             c---cchhhHHHHHHHHHHHHHHHhhccC
Q 008137          518 G---SAGTFLLFAGFSLLGLVAIYLLVPE  543 (576)
Q Consensus       518 g---~~~~~~~~~~~~~i~~~~~~~~~~~  543 (576)
                      |   |+.+..+.....++..+..++...+
T Consensus       167 g~~~w~~~~~i~~~~l~v~~v~~~~~~~d  195 (417)
T COG2223         167 GFLAWRNVAGIYVVALAIAAVLAWLGMND  195 (417)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            8   8888888888888888777776543

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.90  E-value=1e-07  Score=102.08  Aligned_cols=182  Identities=14%  Similarity=0.060  Sum_probs=129.8

Q ss_pred             hhHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHH
Q 008137           25 PYIMKLALSAGIGGLLFGYDTGVISGALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGAD  104 (576)
Q Consensus        25 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~  104 (576)
                      ..|+.....+.+......-+...+...-..+.++-|.+..+.   .++.....+...++.+++.++.||+|||+.++++.
T Consensus       266 ~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~a---~~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~  342 (485)
T KOG0569|consen  266 TLRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPEEA---QYANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISL  342 (485)
T ss_pred             chhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHH
Confidence            344443333333333344444455555667888889888888   78888888899999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcc---hHH------HHHHHHHHHHhhhhh-hhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHH
Q 008137          105 VLFFIGAIIMAIAP---QPW------VIILGRIFVGLGVGM-ASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYL  174 (576)
Q Consensus       105 ~~~~i~~~~~~~~~---~~~------~l~~~R~l~G~~~g~-~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~  174 (576)
                      .+..+..+++....   +..      ..+++.++..++.+. .-|...-+.+|.+|++.|..++++-.+..-+..++-..
T Consensus       343 ~~~~~~~~~~~~~~~l~~~~~~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~  422 (485)
T KOG0569|consen  343 SLMAVALLLMSIALFLSNSFGSWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGF  422 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHH
Confidence            99988888776542   111      123444444433332 35778889999999999999999988888887777666


Q ss_pred             HHHHhcCCCchhHHHHHHhHHHHHHHHHH-HhhccCCh
Q 008137          175 INLAFTKAPGTWRWMLGVAGLPAVVQFGL-MMMLPESP  211 (576)
Q Consensus       175 l~~~l~~~~~~Wr~~f~v~~~~~~~~~~~-~~~l~esp  211 (576)
                      .-..+.+..|.  +.|+...+++.+..+. ++++||+.
T Consensus       423 ~fp~l~~~~g~--~~filF~i~~~~~~i~~~~~lPETk  458 (485)
T KOG0569|consen  423 AFPPLQNVIGP--YVFILFVIPLAIFLIYLYRYLPETK  458 (485)
T ss_pred             HHHHHHHHhcc--hhhHHHHHHHHHHHHHHHHhCcccC
Confidence            66666665553  6777777776666555 77899984

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=98.90  E-value=5.4e-08  Score=106.73  Aligned_cols=165  Identities=13%  Similarity=-0.039  Sum_probs=109.9

Q ss_pred             HHHHHHHHhhHHHHhhhHHHHHhhcCCchhHHHHHHHHHhHHHHHHHHHHHHhhcc-cCChHHHHHHHHHHHHHHHHHHH
Q 008137          284 VQVAQQFVGINTVMYYSPTIVQFAGFASKSTALALSLVTSGLNALGSIVSMAFVDK-YGRRRLMIVSMFGLSSCLVALAV  362 (576)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dk-~grr~~~~~~~~~~~~~~~~~~~  362 (576)
                      ...+....+++....+.+.|+++..+.+...+...............+++|+++|| +|||+.+..+.++..++.+++.+
T Consensus        28 ~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~~~  107 (500)
T PRK09584         28 SIELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYALVAW  107 (500)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHH
Confidence            33334445566677778888865544466665555555444444445789999999 59999999998888887666654


Q ss_pred             HHHHhhhcCCCccccccccCCCCCCCCcccccCCCCcccccccccccccccCCCCCCCCCCccccccccccccccccccc
Q 008137          363 VFFQAAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAHKGNEYLPGACLIDEKSTDTLCSDEHRT  442 (576)
Q Consensus       363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  442 (576)
                      ...                                                                             
T Consensus       108 ~~~-----------------------------------------------------------------------------  110 (500)
T PRK09584        108 SGH-----------------------------------------------------------------------------  110 (500)
T ss_pred             hcc-----------------------------------------------------------------------------
Confidence            311                                                                             


Q ss_pred             ccccCCCCcchhHHHHHHHHHHHHhcCCcccccchhccccccccc--cccchhHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 008137          443 YFISGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEIYPLRY--RGVGGGIAAVSNWTSNLIVSLTFLTLTEALGSA  520 (576)
Q Consensus       443 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~--rg~~~g~~~~~~~~g~~~~~~~~~~l~~~~g~~  520 (576)
                               ..+...+...+.+.+.+ ...+....+..|.+|++.  |+.+.++.+...++|..++|.+.+++.+..||+
T Consensus       111 ---------~~~~l~~~~~l~gig~g-~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g~~  180 (500)
T PRK09584        111 ---------DAGIVYMGMATIAVGNG-LFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAKYGWS  180 (500)
T ss_pred             ---------cHHHHHHHHHHHHHhhh-cccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHhhCHH
Confidence                     00222222233333322 233455577889997643  445788889999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHHH
Q 008137          521 GTFLLFAGFSLLGLV  535 (576)
Q Consensus       521 ~~~~~~~~~~~i~~~  535 (576)
                      ..|.+.++..+++.+
T Consensus       181 ~~F~i~~i~~~i~~i  195 (500)
T PRK09584        181 VAFALSVVGMLITVV  195 (500)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999887765555443

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=98.89  E-value=1.4e-09  Score=112.95  Aligned_cols=159  Identities=17%  Similarity=0.047  Sum_probs=128.9

Q ss_pred             hhcCCchhHHHHHHHHHhHHHHHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccccccCCCC
Q 008137          306 FAGFASKSTALALSLVTSGLNALGSIVSMAFVDKYGRRRLMIVSMFGLSSCLVALAVVFFQAAIHAPTVSQIESSHFGGN  385 (576)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dk~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  385 (576)
                      ++.+.+....+++..+..+..++++++.|++.||++|++++.++..+-.++.++-.+..++                   
T Consensus        61 ~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW~~Av~~~~fs~~F-------------------  121 (493)
T KOG1330|consen   61 TYFNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIWTLAVFASGFSNHF-------------------  121 (493)
T ss_pred             HhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHHHHHHHHHHHHHHH-------------------
Confidence            3444577788899999999999999999999999999999999988888887777766432                   


Q ss_pred             CCCCcccccCCCCcccccccccccccccCCCCCCCCCCcccccccccccccccccccccccCCCCcchhHHHHHHHHHHH
Q 008137          386 NTCPAYITDGNAKSWNCMDCLKAKCGFCAHKGNEYLPGACLIDEKSTDTLCSDEHRTYFISGCPSSFGWLAVVFLGAYII  465 (576)
Q Consensus       386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~  465 (576)
                                                                                          |..+++-.+.++
T Consensus       122 --------------------------------------------------------------------wq~~l~R~~vGi  133 (493)
T KOG1330|consen  122 --------------------------------------------------------------------WQVLLCRGFVGI  133 (493)
T ss_pred             --------------------------------------------------------------------HHHHHHHHHhcc
Confidence                                                                                444444444444


Q ss_pred             HhcCCcccccchhccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHhhc-cchhhHHHHHHHHHHHHHHHhhccCC
Q 008137          466 TYSPGMGTAPWIVNSEIYPLRYRGVGGGIAAVSNWTSNLIVSLTFLTLTEALG-SAGTFLLFAGFSLLGLVAIYLLVPET  544 (576)
Q Consensus       466 ~~~~~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~g~~~~~~~~~~l~~~~g-~~~~~~~~~~~~~i~~~~~~~~~~~~  544 (576)
                      +- .++.|+..++++|.+|...|++++++.+++...|..++-+....+.+..+ |++.|...+++.++..++..++.+|.
T Consensus       134 Ge-As~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~Wr~af~~~avl~vi~~~L~~~f~~eP  212 (493)
T KOG1330|consen  134 GE-ASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTFWWRWAFRGSAVLGVIVGLLVFLFVREP  212 (493)
T ss_pred             ch-hhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCccceEEEEEeehHHHHHHHHHHHhhccCc
Confidence            33 35667888999999999999999999999999999888888877777766 89999999999999999998888887


Q ss_pred             CCCCHHHH
Q 008137          545 KGLAFEEV  552 (576)
Q Consensus       545 ~~~~~~~~  552 (576)
                      ++++.++.
T Consensus       213 ~rga~~~~  220 (493)
T KOG1330|consen  213 ERGARDEV  220 (493)
T ss_pred             cccccccc
Confidence            76544443

>PRK09848 glucuronide transporter; Provisional

Probab=98.88  E-value=1.3e-07  Score=102.32  Aligned_cols=132  Identities=17%  Similarity=0.150  Sum_probs=103.2

Q ss_pred             hHHHHHHHHHH-hhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHhcc--hHHHH
Q 008137           47 VISGALLYIKE-DFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFIGAIIMAIAP--QPWVI  123 (576)
Q Consensus        47 ~~~~~~~~i~~-~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~--~~~~l  123 (576)
                      ......|.+.+ .++.+....   ++......++..++.++.+++.||+|+|+.+.++.++..++.++..+.+  +++.+
T Consensus       246 ~~~~~~~~~~~~~~g~~~~~~---~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~  322 (448)
T PRK09848        246 AVSASSLFYVRYVLNDTGLFT---VLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWVSVWSLPVA  322 (448)
T ss_pred             HHhhhheeeEeeecCChHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCchhHHHH
Confidence            33344555444 355443332   4445555677888999999999999999999999999888888777754  67777


Q ss_pred             HHHHHHHHhhhhhhhhhHHHHHHhccCcc-------hhhHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 008137          124 ILGRIFVGLGVGMASMTAPLYISEASPAK-------IRGALVSANGFLITGGQFLAYLINLAFTK  181 (576)
Q Consensus       124 ~~~R~l~G~~~g~~~~~~~~~i~e~~~~~-------~R~~~~~~~~~~~~~G~~l~~~l~~~l~~  181 (576)
                      ++..++.|+|.+...+...++.+|..|.+       ++|...++++....+|..+|+.+.+.+.+
T Consensus       323 ~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~  387 (448)
T PRK09848        323 LVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILG  387 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77889999999999999999999988754       35899999999999999999998887654

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=98.87  E-value=1.9e-07  Score=99.16  Aligned_cols=141  Identities=12%  Similarity=0.033  Sum_probs=112.2

Q ss_pred             HHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhhh
Q 008137           55 IKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFIGAIIMAIAPQPWVIILGRIFVGLGV  134 (576)
Q Consensus        55 i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~R~l~G~~~  134 (576)
                      +.+.+|.++.+.   |++.+...++..+++++.+++.||+++|+.+..+. +.++..++.++.++++...+.-++.|++.
T Consensus       232 ~~~~lg~s~~~~---G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~G~~~  307 (393)
T PRK11195        232 APVALGITLNQP---AYLQAVVAIGIAVGAGAAARLVTLETVLRVLPAGI-LMGLVVLLMALQHSLLPAYPLLILIGALG  307 (393)
T ss_pred             HHHHcCCChhHH---HHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHH-HHHHHHHHHHHHhHHHHHHHHHHHHHHhh
Confidence            455678877777   99999999999999999999999999998888775 44555555666778887788888999999


Q ss_pred             hhhhhhHHHHHHhccCcch-hhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHhHHHHHH
Q 008137          135 GMASMTAPLYISEASPAKI-RGALVSANGFLITGGQFLAYLINLAFTKAPGTWRWMLGVAGLPAVV  199 (576)
Q Consensus       135 g~~~~~~~~~i~e~~~~~~-R~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~Wr~~f~v~~~~~~~  199 (576)
                      +...+...+.+.+..|++. +|++.++.+....+|..++..+.+.+....-.++..|...+.+...
T Consensus       308 g~~~~~~~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  373 (393)
T PRK11195        308 GFFVVPMNALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLLVKLGVPVVAVIVGFGLLVAL  373 (393)
T ss_pred             hhhhhhHHHHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence            9888888888888766654 7999999999999999999999987755433455555555555333

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=98.86  E-value=8.4e-08  Score=102.90  Aligned_cols=183  Identities=13%  Similarity=-0.003  Sum_probs=121.0

Q ss_pred             hhHHHHHHHHHHHHHhhHHHHhhhHHHHH-hhcCCchhHHHHHHHHHhHHHHHHHHHHHHhhcccCChHHHHHHHHHHHH
Q 008137          277 GLYAGVTVQVAQQFVGINTVMYYSPTIVQ-FAGFASKSTALALSLVTSGLNALGSIVSMAFVDKYGRRRLMIVSMFGLSS  355 (576)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dk~grr~~~~~~~~~~~~  355 (576)
                      +.+....+.+...+..+.......+.+.+ +.+. +..+.+.+..+..+...++.+..|++.||+|.|+++..+.++..+
T Consensus        34 r~l~~s~~~f~~~F~~w~~~~~l~~~~~~~~~~l-s~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~i  112 (462)
T PRK15034         34 RNLWISVSCLLLAFCVWMLFSAVTVNLNKIGFNF-TTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILII  112 (462)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHH
Confidence            34555666677777777777766666655 4555 777788888888888889999999999999999999988888777


Q ss_pred             HHHHHHHHHHHhhhcCCCccccccccCCCCCCCCcccccCCCCcccccccccccccccCCCCCCCCCCcccccccccccc
Q 008137          356 CLVALAVVFFQAAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAHKGNEYLPGACLIDEKSTDTL  435 (576)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  435 (576)
                      ..+++.+.....                                                                    
T Consensus       113 ~~~~~~~a~~~~--------------------------------------------------------------------  124 (462)
T PRK15034        113 PCVWLGIAVQNP--------------------------------------------------------------------  124 (462)
T ss_pred             HHHHHHHHHccc--------------------------------------------------------------------
Confidence            776665531100                                                                    


Q ss_pred             cccccccccccCCCCcchhHHHHHHHHHHHHhcCCcccccchhccccccccccccchhHHHHHHHHHHHHHHHHHHHHH-
Q 008137          436 CSDEHRTYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEIYPLRYRGVGGGIAAVSNWTSNLIVSLTFLTLT-  514 (576)
Q Consensus       436 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~g~~~~~~~~~~l~-  514 (576)
                                    .+.-+..++..++.+++ + +..+.....+++.+|+++||++.|+....+++|..+.+++.+.+. 
T Consensus       125 --------------~~s~~~lli~r~l~Gig-g-~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i~  188 (462)
T PRK15034        125 --------------NTPFGIFIVIALLCGFA-G-ANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPLVIF  188 (462)
T ss_pred             --------------CCCHHHHHHHHHHHHHH-H-HhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence                          00012223333333332 2 233455567889999999999999997777777776666555433 


Q ss_pred             ----Hhh-------------ccchhhHHHHHHHHHHHHHHHhhccCC
Q 008137          515 ----EAL-------------GSAGTFLLFAGFSLLGLVAIYLLVPET  544 (576)
Q Consensus       515 ----~~~-------------g~~~~~~~~~~~~~i~~~~~~~~~~~~  544 (576)
                          +..             +++.+.++...+.++..++.+++.++.
T Consensus       189 ~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~~~~~  235 (462)
T PRK15034        189 VPVFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSGMNDI  235 (462)
T ss_pred             HHHHHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence                322             344555677777777766666665553

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=98.84  E-value=1.1e-07  Score=101.62  Aligned_cols=159  Identities=13%  Similarity=-0.057  Sum_probs=113.2

Q ss_pred             hHHHHhhhHHHHHhhcCCchhHHHHHHHHHhHHHHHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 008137          293 INTVMYYSPTIVQFAGFASKSTALALSLVTSGLNALGSIVSMAFVDKYGRRRLMIVSMFGLSSCLVALAVVFFQAAIHAP  372 (576)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dk~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  372 (576)
                      ........|.+.++.+. +..+.+.+.....++.+++++..|++.||+|||+.+..+..+.+++.+++.......     
T Consensus        19 ~~~~~~l~~~~~~~~~~-s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l~~~~~~~~-----   92 (410)
T TIGR00885        19 NDITNPMVPQFQQAFTL-TAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFLFWPAAEIM-----   92 (410)
T ss_pred             HHhHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHhhc-----
Confidence            34444566777666665 777888999999999999999999999999999999999999888876654332100     


Q ss_pred             CccccccccCCCCCCCCcccccCCCCcccccccccccccccCCCCCCCCCCcccccccccccccccccccccccCCCCcc
Q 008137          373 TVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAHKGNEYLPGACLIDEKSTDTLCSDEHRTYFISGCPSSF  452 (576)
Q Consensus       373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~  452 (576)
                                                                                                     .
T Consensus        93 -------------------------------------------------------------------------------~   93 (410)
T TIGR00885        93 -------------------------------------------------------------------------------N   93 (410)
T ss_pred             -------------------------------------------------------------------------------c
Confidence                                                                                           0


Q ss_pred             hhHHHHHHHHHHHHhcCCcccccchhccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHh----------------
Q 008137          453 GWLAVVFLGAYIITYSPGMGTAPWIVNSEIYPLRYRGVGGGIAAVSNWTSNLIVSLTFLTLTEA----------------  516 (576)
Q Consensus       453 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~g~~~~~~~~~~l~~~----------------  516 (576)
                      .+..++..++.+.+.+.. .+....+..+..|++.|++..++.+..+.+|..++|.+.+.+...                
T Consensus        94 ~~~~l~~~~l~G~g~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~~~~~~~~~  172 (410)
T TIGR00885        94 YTLFLVGLFILTAGLGFL-ETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQDVLDKLSPE  172 (410)
T ss_pred             HHHHHHHHHHHHhhHHHH-HhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhhhhhcCHH
Confidence            122233333333333221 233345667788889999999999999999999999998877532                


Q ss_pred             ----------hccchhhHHHHHHHHHHHHHH
Q 008137          517 ----------LGSAGTFLLFAGFSLLGLVAI  537 (576)
Q Consensus       517 ----------~g~~~~~~~~~~~~~i~~~~~  537 (576)
                                .+|+.+|++.+++.++..++.
T Consensus       173 ~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~  203 (410)
T TIGR00885       173 ELSAIKHSDLASVQTPYMIIGAVVLAVALLI  203 (410)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                      357888888887766655443

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=98.82  E-value=3.2e-08  Score=104.44  Aligned_cols=161  Identities=17%  Similarity=0.073  Sum_probs=117.4

Q ss_pred             HHhhHHHHhhhHHHHHhhcCCchhHHHHHHHHHhHHHHHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008137          290 FVGINTVMYYSPTIVQFAGFASKSTALALSLVTSGLNALGSIVSMAFVDKYGRRRLMIVSMFGLSSCLVALAVVFFQAAI  369 (576)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dk~grr~~~~~~~~~~~~~~~~~~~~~~~~~~  369 (576)
                      ..+...+.+++--++++.+. .+..-|........+.++.-++.+++.+|+|+-+++.+++.+..+=++.+.+...    
T Consensus       384 G~g~~lv~tFLfWHled~~~-~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L~n----  458 (618)
T KOG3762|consen  384 GAGVGLVFTFLFWHLEDLGG-IKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYLQN----  458 (618)
T ss_pred             HHHHHHHHHHHHHHHhhcCC-cceeeeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHhcC----
Confidence            33445555555566777775 4555566777778888899999999999999999999888887777776665532    


Q ss_pred             cCCCccccccccCCCCCCCCcccccCCCCcccccccccccccccCCCCCCCCCCcccccccccccccccccccccccCCC
Q 008137          370 HAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAHKGNEYLPGACLIDEKSTDTLCSDEHRTYFISGCP  449 (576)
Q Consensus       370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p  449 (576)
                                                                                                      
T Consensus       459 --------------------------------------------------------------------------------  458 (618)
T KOG3762|consen  459 --------------------------------------------------------------------------------  458 (618)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CcchhHHHHHHHHHHHHhcCCcccccchhccccccccccccchhHHHH-HHHHHHHHHHHHHHHHHHhhccchhhHHHHH
Q 008137          450 SSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEIYPLRYRGVGGGIAAV-SNWTSNLIVSLTFLTLTEALGSAGTFLLFAG  528 (576)
Q Consensus       450 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~~~g~~~~-~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~  528 (576)
                         +|..+-+=.+-++.....+. ...+|++...|++.|.++.|+... ...+|-.+|+++.|.+.+.+|.+.+|.++++
T Consensus       459 ---~W~vLPieilqgit~aliWa-a~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg~~ttf~~~gi  534 (618)
T KOG3762|consen  459 ---PWMVLPIEILQGITHALIWA-AIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFGARTTFRIFGI  534 (618)
T ss_pred             ---chheeeHHHHHHHHHHHHHH-HHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheeehhHHHHHHHHH
Confidence               23333333333333332222 334788999999999999999854 4577888999999999999999999999999


Q ss_pred             HHHHHHHHHHh
Q 008137          529 FSLLGLVAIYL  539 (576)
Q Consensus       529 ~~~i~~~~~~~  539 (576)
                      .+++.+++...
T Consensus       535 Acl~~l~~~~~  545 (618)
T KOG3762|consen  535 ACLVTLALFIS  545 (618)
T ss_pred             HHHHHHHHHHH
Confidence            88887766543

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=98.81  E-value=1.8e-06  Score=96.84  Aligned_cols=153  Identities=15%  Similarity=0.261  Sum_probs=123.1

Q ss_pred             HHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhc-cCchHHHHHHHHHHHHHHHHHHhcch--------H
Q 008137           50 GALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDR-FGRKISLLGADVLFFIGAIIMAIAPQ--------P  120 (576)
Q Consensus        50 ~~~~~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr-~Grr~~~~~~~~~~~i~~~~~~~~~~--------~  120 (576)
                      .+...+.+.++.++...   ..+...+....-+..+++|+++|+ +||++.+.++.++..++.++.+++..        .
T Consensus         9 iLvlYl~~~lg~~~~~A---~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~   85 (654)
T TIGR00926         9 ILVLYFLNFLGFSESTS---TVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHD   85 (654)
T ss_pred             HHHHHHHHHcCCcHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHH
Confidence            34455566788877777   777888888888889999999997 69999999999999999988877521        2


Q ss_pred             HHHHHHHHHHHhhhhhhhhhHHHHHHhccCcc---hhhHHHHHHHHHHHHHHHHHHHHHHHhcCCC------chhHHHHH
Q 008137          121 WVIILGRIFVGLGVGMASMTAPLYISEASPAK---IRGALVSANGFLITGGQFLAYLINLAFTKAP------GTWRWMLG  191 (576)
Q Consensus       121 ~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~---~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~~------~~Wr~~f~  191 (576)
                      ..++++-.+..+|.|++-+...+...|.++++   +|...+.++..+.++|.++++++..++.+..      .+|.+.|.
T Consensus        86 ~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~  165 (654)
T TIGR00926        86 LLDLLGLALIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFG  165 (654)
T ss_pred             HHHHHHHHHHHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHH
Confidence            34667788889999999999999999999754   3677888999999999999999998886332      14999999


Q ss_pred             HhHHHHHHHHHHHh
Q 008137          192 VAGLPAVVQFGLMM  205 (576)
Q Consensus       192 v~~~~~~~~~~~~~  205 (576)
                      +.++..++.++...
T Consensus       166 i~~i~m~ia~lvf~  179 (654)
T TIGR00926       166 VPAILMILALIVFM  179 (654)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99888877766644

>TIGR00805 oat sodium-independent organic anion transporter

Probab=98.81  E-value=5.4e-08  Score=109.45  Aligned_cols=219  Identities=15%  Similarity=0.025  Sum_probs=129.6

Q ss_pred             HHHHHHHHHHHhhHHHHhhhHHHHHhhcCCchhHHHHHHHHHhHHHHHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHH
Q 008137          281 GVTVQVAQQFVGINTVMYYSPTIVQFAGFASKSTALALSLVTSGLNALGSIVSMAFVDKYGRRRLMIVSMFGLSSCLVAL  360 (576)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dk~grr~~~~~~~~~~~~~~~~~  360 (576)
                      ......+.+...........+.+-++.+. +..+.+.+.....++.+++.++.+++.||.+||+.+.+++++++++.+++
T Consensus        37 ~~~~~~~~~~~~~g~~~~~l~~iek~F~l-ss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~  115 (633)
T TIGR00805        37 LLTCAQLQGLLYNGLVNSSLTTIERRFKL-STSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLL  115 (633)
T ss_pred             HHHHHHHHHHHHHHHHHhhchhhhhhhCC-CCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHH
Confidence            33334444444444555555666566665 66677888888899999999999999999999999999999999999888


Q ss_pred             HHHHHHhhhcCCCccccccccCCCCCCCCcccccCCCCcccccccccccccccCCCCCCCCCCcccccc------ccccc
Q 008137          361 AVVFFQAAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAHKGNEYLPGACLIDE------KSTDT  434 (576)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~  434 (576)
                      ++............        ++       ..+++.-.                    ..+..|-..+      .+...
T Consensus       116 alphf~~~~y~~~~--------~~-------~~~~~~~~--------------------~~~~~c~~~~~~~~~~~~~~~  160 (633)
T TIGR00805       116 SLPHFLSGRYSYST--------TV-------SSTGNLSS--------------------ANSFLCMENLTQALRPTQCPS  160 (633)
T ss_pred             hChHHhcCCccccc--------cc-------cccccccc--------------------cccccccCCCCCCcccccccc
Confidence            77644221100000        00       00000000                    0000110000      00011


Q ss_pred             ccccccccccccCCCCcchhHHHHHHHHHHHHhcCCcccccchhccccccccccccchhHHHHHHHHHHHHHHHHHHHHH
Q 008137          435 LCSDEHRTYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEIYPLRYRGVGGGIAAVSNWTSNLIVSLTFLTLT  514 (576)
Q Consensus       435 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~g~~~~~~~~~~l~  514 (576)
                      .|.++...        ...+..+++.-++.+.......+...+++.|.+|++.|+...|+.+....+|..+++.+.+.+.
T Consensus       161 ~~~~~~~~--------~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~  232 (633)
T TIGR00805       161 ECQKQHKE--------SLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCL  232 (633)
T ss_pred             ccccccCC--------CceehhhHHHHHHHhccCCcchhcCchhhhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence            22222110        1112222222222222233445677789999999999999999999999999999999999887


Q ss_pred             Hhh----------------------ccchhhHHHHHHHHHHHHHHHhhccCC
Q 008137          515 EAL----------------------GSAGTFLLFAGFSLLGLVAIYLLVPET  544 (576)
Q Consensus       515 ~~~----------------------g~~~~~~~~~~~~~i~~~~~~~~~~~~  544 (576)
                      +.+                      +|+..|++.+++.++..+.. ++.|++
T Consensus       233 ~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v~l-~~~p~~  283 (633)
T TIGR00805       233 QIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLTSIPF-FFFPKA  283 (633)
T ss_pred             hcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHH-HhCccc
Confidence            643                      15556777777777766554 445544

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>PF13347 MFS_2: MFS/sugar transport protein

Probab=98.79  E-value=7.2e-08  Score=103.60  Aligned_cols=145  Identities=20%  Similarity=0.246  Sum_probs=120.8

Q ss_pred             HHHHHhhhhhhhhHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHH
Q 008137           35 GIGGLLFGYDTGVISGALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFIGAIIM  114 (576)
Q Consensus        35 ~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~  114 (576)
                      .+..++............+.+.++.-..++..   +.+..+..++..++.+++++++||+|+|+++..+.++.+++.++.
T Consensus       231 ~~~~~~~~~~~~~~~~~~~y~~~~vl~~~~~~---~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~  307 (428)
T PF13347_consen  231 LLAFFLQWLAFALMNTFLPYYFTYVLGNEGLI---SIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLL  307 (428)
T ss_pred             HHHHHHHHhhhhhhhhHHHHHHHHHhcCchhh---HHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHH
Confidence            34445556666666667777776643333444   888889999999999999999999999999999999999999998


Q ss_pred             Hhcc--hHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcc-------hhhHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 008137          115 AIAP--QPWVIILGRIFVGLGVGMASMTAPLYISEASPAK-------IRGALVSANGFLITGGQFLAYLINLAFTKA  182 (576)
Q Consensus       115 ~~~~--~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~-------~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~  182 (576)
                      .+.+  +.+.+++.-++.|++.+...+...++++|..+.+       +.|...+.++...-+|..++..+.+.+.+.
T Consensus       308 ~~~~~~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l~~  384 (428)
T PF13347_consen  308 FFLGPGSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLLAL  384 (428)
T ss_pred             HHHHhhhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Confidence            8886  9999999999999999999999999999988733       348889999999999999999988877543

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=98.78  E-value=3.4e-08  Score=100.18  Aligned_cols=147  Identities=18%  Similarity=0.144  Sum_probs=107.4

Q ss_pred             chhHHHHHHHHHhHHHHHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccccccCCCCCCCCc
Q 008137          311 SKSTALALSLVTSGLNALGSIVSMAFVDKYGRRRLMIVSMFGLSSCLVALAVVFFQAAIHAPTVSQIESSHFGGNNTCPA  390 (576)
Q Consensus       311 ~~~~~~~~~~~~~~~~~ig~~~~g~l~dk~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  390 (576)
                      +...+|++...+.+...+.++..|.++||+|||.++..+++..++...+.+....                         
T Consensus        66 ~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~-------------------------  120 (451)
T KOG2615|consen   66 SVFYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRN-------------------------  120 (451)
T ss_pred             cchhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHH-------------------------
Confidence            5667889999999999999999999999999999999999888887776665533                         


Q ss_pred             ccccCCCCcccccccccccccccCCCCCCCCCCcccccccccccccccccccccccCCCCcchhHHHHHHHHHHHHhcCC
Q 008137          391 YITDGNAKSWNCMDCLKAKCGFCAHKGNEYLPGACLIDEKSTDTLCSDEHRTYFISGCPSSFGWLAVVFLGAYIITYSPG  470 (576)
Q Consensus       391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~  470 (576)
                                                                                     ..+++. .-+..+..=+
T Consensus       121 ---------------------------------------------------------------F~afv~-aR~l~Gi~kg  136 (451)
T KOG2615|consen  121 ---------------------------------------------------------------FAAFVL-ARFLGGIFKG  136 (451)
T ss_pred             ---------------------------------------------------------------HHHHHH-HHHhhhhccC
Confidence                                                                           211222 1222233234


Q ss_pred             cccccchhccccccccccccchhHHHHHHHHHHHHHHHHHHHHHH---hhccchhhH---HHHHHHHHHHHHHHhhccCC
Q 008137          471 MGTAPWIVNSEIYPLRYRGVGGGIAAVSNWTSNLIVSLTFLTLTE---ALGSAGTFL---LFAGFSLLGLVAIYLLVPET  544 (576)
Q Consensus       471 ~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~g~~~~~~~~~~l~~---~~g~~~~~~---~~~~~~~i~~~~~~~~~~~~  544 (576)
                      ...+..++++|++++++|+.+++..+....+|-++||.+.|++.+   ..|.+..++   +..+++........+++|||
T Consensus       137 nl~v~rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~f~~~~g~~p~alP~~~v~i~a~~~v~~~~~~lpET  216 (451)
T KOG2615|consen  137 NLSVIRAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQFSSISGSYPFALPCLLVFILAAGDVTFFPWFLPET  216 (451)
T ss_pred             chHHHHHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHhhHhhhccCchHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence            445677899999999999999999999999999999999999988   445443222   22222222234445678988


Q ss_pred             CC
Q 008137          545 KG  546 (576)
Q Consensus       545 ~~  546 (576)
                      -.
T Consensus       217 L~  218 (451)
T KOG2615|consen  217 LP  218 (451)
T ss_pred             cc
Confidence            44

>PRK10133 L-fucose transporter; Provisional

Probab=98.72  E-value=5.9e-07  Score=96.90  Aligned_cols=139  Identities=12%  Similarity=-0.066  Sum_probs=110.2

Q ss_pred             HHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhhhh
Q 008137           56 KEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFIGAIIMAIAPQPWVIILGRIFVGLGVG  135 (576)
Q Consensus        56 ~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~R~l~G~~~g  135 (576)
                      .+.+|.++.+.   ++..+.+.++..++.++.|++.||+|||+++..+.++..++.++..+.++.+ -+..-.+.|++.+
T Consensus       287 ~~~~g~s~~~a---g~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~glg~~  362 (438)
T PRK10133        287 EEIPGMTAGFA---ANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHV-GLIALTLCSAFMS  362 (438)
T ss_pred             hhcCCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCChH-HHHHHHHHHHHHH
Confidence            34678888888   9999999999999999999999999999999998888777777766666643 3456788999999


Q ss_pred             hhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHhHHHHHHH
Q 008137          136 MASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFTKAPGTWRWMLGVAGLPAVVQ  200 (576)
Q Consensus       136 ~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~Wr~~f~v~~~~~~~~  200 (576)
                      ..+|...+...|..|+ +.+.+.++..+ ..+|..+++++.+.+.+..++-|..|++..+..+..
T Consensus       363 ~i~P~~~s~a~~~~~~-~~~~as~l~~~-~~~g~~~~~~i~G~l~~~~g~~~~~~~v~~~~~~~~  425 (438)
T PRK10133        363 IQYPTIFSLGIKNLGQ-DTKYGSSFIVM-TIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVI  425 (438)
T ss_pred             HHHHHHHHHHHcccch-hhccchhHHhH-HhccchHHHHHHHHHHHhccchHHHHHHHHHHHHHH
Confidence            9999999999998865 45677777764 446788888888888876543677777655544433

>PRK10429 melibiose:sodium symporter; Provisional

Probab=98.72  E-value=2.2e-07  Score=101.21  Aligned_cols=136  Identities=13%  Similarity=0.184  Sum_probs=102.3

Q ss_pred             hhhhhHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHh-----c
Q 008137           43 YDTGVISGALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFIGAIIMAI-----A  117 (576)
Q Consensus        43 ~~~~~~~~~~~~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~-----~  117 (576)
                      ..........+++.+....+....   +++.++..++..++.+++++++||+|+|+.+.++.++..++.+...+     .
T Consensus       245 ~~~~~~~~~~~y~~~y~~~~~~~~---~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~  321 (473)
T PRK10429        245 IASNIINGFAIYYFTYVIGDADLF---PYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGLAAP  321 (473)
T ss_pred             HHHHHHhhheeeEEEEECCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCc
Confidence            344444445555555443333333   67777777899999999999999999999999888877766655432     3


Q ss_pred             chHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCc-------chhhHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 008137          118 PQPWVIILGRIFVGLGVGMASMTAPLYISEASPA-------KIRGALVSANGFLITGGQFLAYLINLAFTK  181 (576)
Q Consensus       118 ~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~-------~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~  181 (576)
                      .+.+.+++.-++.|++.+...+...++++|..+.       +..|..++......-+|..+++.+.+.+.+
T Consensus       322 ~~~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l~  392 (473)
T PRK10429        322 HNALLIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVLG  392 (473)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4567777788899999999999999999999652       223668899999999999999998888764

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=98.68  E-value=1.4e-07  Score=98.07  Aligned_cols=136  Identities=13%  Similarity=0.190  Sum_probs=103.0

Q ss_pred             hhhhhhhHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhh----ccCchHHHHH-HHHHHHHHHHHHH
Q 008137           41 FGYDTGVISGALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWIND----RFGRKISLLG-ADVLFFIGAIIMA  115 (576)
Q Consensus        41 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~d----r~Grr~~~~~-~~~~~~i~~~~~~  115 (576)
                      ..+....=....+++.++.|++.+-.   +.+--...+...+.|++.|..+|    ||||||.++. +.+...++.++..
T Consensus        44 vqf~wA~elsy~tPyl~~lGvphk~~---S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i~~~l~Lig  120 (498)
T KOG0637|consen   44 VQFGWALELSYLTPYLQSLGVPHKWS---SIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLLIAVSLFLIG  120 (498)
T ss_pred             HHHHHHHHhccccHHHHHcCCCcccc---cccccccccccceecccccccccccccccccccchHHHhhHHHHHHHhhhh
Confidence            34444444456778888999887776   77878888888889999999999    5899776655 4455566666776


Q ss_pred             hcch-----------------HHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhH-HHHHHHHHHHHHHHHHHHHHH
Q 008137          116 IAPQ-----------------PWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGA-LVSANGFLITGGQFLAYLINL  177 (576)
Q Consensus       116 ~~~~-----------------~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~-~~~~~~~~~~~G~~l~~~l~~  177 (576)
                      ++.+                 ...++++--+.=++.-.....+.++++|.....+|.+ +.+++....++|..+|+.+++
T Consensus       121 ~aaDig~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~avGnvLGY~~g~  200 (498)
T KOG0637|consen  121 YAADIGLLLGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFFMAVGNVLGYALGS  200 (498)
T ss_pred             hHhhhhHHhcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHHHHhcceeeeeccc
Confidence            6543                 2344555555566777788889999999997777666 999999999999999999988


Q ss_pred             Hh
Q 008137          178 AF  179 (576)
Q Consensus       178 ~l  179 (576)
                      ++
T Consensus       201 y~  202 (498)
T KOG0637|consen  201 YL  202 (498)
T ss_pred             cc
Confidence            44

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=98.67  E-value=5.2e-07  Score=97.44  Aligned_cols=182  Identities=12%  Similarity=-0.002  Sum_probs=117.3

Q ss_pred             hhHHHHhhhHHHHHhhcCCchhHHHHHHHHHhHHHHHHHHHHHHhhc----ccCChHHHHHH-HHHHHHHHHHHHHHHHH
Q 008137          292 GINTVMYYSPTIVQFAGFASKSTALALSLVTSGLNALGSIVSMAFVD----KYGRRRLMIVS-MFGLSSCLVALAVVFFQ  366 (576)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~d----k~grr~~~~~~-~~~~~~~~~~~~~~~~~  366 (576)
                      ++.....+.+.|++..+. +....+.+.....+.+++..++.|+++|    |+|||+.++.+ .+..+++++++.+....
T Consensus        19 ~~~l~~~~l~~yl~~lg~-~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~~~~~~   97 (477)
T TIGR01301        19 GWALQLSLLTPYVQELGI-PHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIGFAADI   97 (477)
T ss_pred             HHHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHHhCchh
Confidence            456666777778888777 7778888888888899999999999999    59999988764 55555555554443211


Q ss_pred             hhhcCCCccccccccCCCCCCCCcccccCCCCcccccccccccccccCCCCCCCCCCccccccccccccccccccccccc
Q 008137          367 AAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAHKGNEYLPGACLIDEKSTDTLCSDEHRTYFIS  446 (576)
Q Consensus       367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  446 (576)
                      ...-....                                                        +      +..+.+   
T Consensus        98 ~~~~~~~~--------------------------------------------------------~------~~~~~~---  112 (477)
T TIGR01301        98 GHLFGDNL--------------------------------------------------------D------KKTKPR---  112 (477)
T ss_pred             hhhccccc--------------------------------------------------------c------ccchhH---
Confidence            00000000                                                        0      000000   


Q ss_pred             CCCCcchhHHHHHHHHHHHHhcCCcccccchhcccccccccc--ccchhHHHHHHHHHHHHHHHHHHHH--HHhh-----
Q 008137          447 GCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEIYPLRYR--GVGGGIAAVSNWTSNLIVSLTFLTL--TEAL-----  517 (576)
Q Consensus       447 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r--g~~~g~~~~~~~~g~~~~~~~~~~l--~~~~-----  517 (576)
                           ..+..++.+.+..+....... ...++.+|+.|+++|  +.+.++.+....+|+++++.+.+..  .+..     
T Consensus       113 -----~i~~~~i~~~lld~~~n~~~~-p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~  186 (477)
T TIGR01301       113 -----AIIVFVVGFWILDVANNMLQG-PCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKT  186 (477)
T ss_pred             -----HHHHHHHHHHHHHHHHHHHHH-HHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccccc
Confidence                 002223333333333333333 345788999998865  5789999999999999999887754  2221     


Q ss_pred             --------ccchhhHHHHHHHHHHHHHHHhhccCCC
Q 008137          518 --------GSAGTFLLFAGFSLLGLVAIYLLVPETK  545 (576)
Q Consensus       518 --------g~~~~~~~~~~~~~i~~~~~~~~~~~~~  545 (576)
                              +.+..|++.+++.+++.++..+..+|..
T Consensus       187 ~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~  222 (477)
T TIGR01301       187 EACGVSCANLKSCFLIDIILLAILTYIALSAVKENP  222 (477)
T ss_pred             cccccccchHHHHHHHHHHHHHHHHHHHeeeeeccC
Confidence                    4456788888888888888888888864

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=98.67  E-value=0.00039  Score=74.98  Aligned_cols=175  Identities=9%  Similarity=-0.008  Sum_probs=113.0

Q ss_pred             HHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhccchh--hhHHHHHHHHHHHHHHHHH-HHHHHHhhhccCchHHHHHHHH
Q 008137           29 KLALSAGIGGLLFGYDTGVISGALLYIKEDFRDVEK--KTWLQELIVSMAVAGAIFG-AGFGGWINDRFGRKISLLGADV  105 (576)
Q Consensus        29 ~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~~~g~i~s~~~~~~~i~-~~~~G~l~dr~Grr~~~~~~~~  105 (576)
                      +.+..+.+..|+..+..+.    +-++.+.+..+..  ......++.+...+...+. .++.+++++|++|++.+-+...
T Consensus         7 ~k~~~~~l~fF~il~~Y~i----LR~lKD~lvv~~~~~gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~   82 (472)
T TIGR00769         7 KKFLPLFLMFFCILFNYTI----LRDTKDTLVVTAKGSGAEIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVIS   82 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHH----HHhhhhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHH
Confidence            3344444444444444333    4556666655322  1223378888887776666 8999999999999999888777


Q ss_pred             HHHHHHHHHHhc----c---------------------------hHHHHHHHHHHHHhhhhhhhh-hHHHHHHhccCcch
Q 008137          106 LFFIGAIIMAIA----P---------------------------QPWVIILGRIFVGLGVGMASM-TAPLYISEASPAKI  153 (576)
Q Consensus       106 ~~~i~~~~~~~~----~---------------------------~~~~l~~~R~l~G~~~g~~~~-~~~~~i~e~~~~~~  153 (576)
                      .+.....+.++.    +                           +.|...++-...-+-...... .-..++.|.+..+|
T Consensus        83 ~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t~~q  162 (472)
T TIGR00769        83 PFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMGFIAILRIWSFALFYVMAELWGSVVLSLLFWGFANQITTIDE  162 (472)
T ss_pred             HHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH
Confidence            776666665554    1                           123333444444554444444 67788999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHhcC-------CCchhH----HHHHHhHHHHHHHHHHHhhc
Q 008137          154 RGALVSANGFLITGGQFLAYLINLAFTK-------APGTWR----WMLGVAGLPAVVQFGLMMML  207 (576)
Q Consensus       154 R~~~~~~~~~~~~~G~~l~~~l~~~l~~-------~~~~Wr----~~f~v~~~~~~~~~~~~~~l  207 (576)
                      -.|..++++.+.++|.++++.+..++.+       ..+.|.    ..+.+.++.+++...+..++
T Consensus       163 akRfy~l~~~ganlg~i~sg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~l  227 (472)
T TIGR00769       163 AKRFYALFGLGANVALIFSGRTIKYFSKLRASLGPGVDGWHVSLKNLMVIVICSGLAIILLYWWV  227 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999998888762       233463    34444444444444444443

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=98.64  E-value=4.2e-07  Score=88.65  Aligned_cols=176  Identities=12%  Similarity=0.110  Sum_probs=129.0

Q ss_pred             HHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHH
Q 008137           27 IMKLALSAGIGGLLFGYDTGVISGALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVL  106 (576)
Q Consensus        27 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~  106 (576)
                      ..+++.++|+...+..+.+...++.  .+++.||.+..+.   +-+.+....-.++.++++|.++|++|++...+.+..+
T Consensus       265 pfw~~~iicv~yyva~fPFi~lg~~--fF~~rfGlS~~~a---~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~  339 (459)
T KOG4686|consen  265 PFWVLVIICVLYYVAWFPFITLGPM--FFQKRFGLSAVSA---GNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACI  339 (459)
T ss_pred             cHHHHHHHHHHHHHHHHHHhhhhHH--HHHHhhCCChhhc---cchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHH
Confidence            3456666777766666666555543  4678999998888   8888887777888899999999999999776665554


Q ss_pred             HH-HHHHHHHhcchHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCch
Q 008137          107 FF-IGAIIMAIAPQPWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFTKAPGT  185 (576)
Q Consensus       107 ~~-i~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~  185 (576)
                      .. ++-....|  +++.=.....++|++...........++-..|.++.|.+.+..+...++|..+.+++++.+.+..++
T Consensus       340 ~tl~~H~~l~F--t~lsPy~~m~~lGLsysllAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g~  417 (459)
T KOG4686|consen  340 LTLLGHSGLFF--TFLSPYTSMTFLGLSYSLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDGS  417 (459)
T ss_pred             HHHHHhhhHHh--hhccHHHHHHHHhhhHHHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCCc
Confidence            43 33333333  2333345677888888777666778888889999999999999999999999999999999987664


Q ss_pred             hHH---HHHHhHHHHHHHHHHHhhccC
Q 008137          186 WRW---MLGVAGLPAVVQFGLMMMLPE  209 (576)
Q Consensus       186 Wr~---~f~v~~~~~~~~~~~~~~l~e  209 (576)
                      +-+   .|+..+.+++....+.+++.+
T Consensus       418 y~~le~ffl~~~~~aL~svgil~~~N~  444 (459)
T KOG4686|consen  418 YDNLEAFFLIIGLMALTSVGILFYLNK  444 (459)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHhheec
Confidence            333   344455566666666665543

>PTZ00207 hypothetical protein; Provisional

Probab=98.62  E-value=1.2e-06  Score=96.83  Aligned_cols=165  Identities=12%  Similarity=0.109  Sum_probs=104.8

Q ss_pred             hHHHHhhhHHHHHhhcCCchhHHHHHHHHHhHHHHHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 008137          293 INTVMYYSPTIVQFAGFASKSTALALSLVTSGLNALGSIVSMAFVDKYGRRRLMIVSMFGLSSCLVALAVVFFQAAIHAP  372 (576)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dk~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  372 (576)
                      .+.+..+.+.+.++.+. +..+.+.+..+.... ....++.|++.||+|+|+++.++.++..++.++..+......  . 
T Consensus        43 ~y~fsv~s~~L~~~lgl-s~~~l~~i~svg~~~-g~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~i--~-  117 (591)
T PTZ00207         43 MYAFNLISGAMQARYNL-TQRDLSTITTVGIAV-GYFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEVI--E-  117 (591)
T ss_pred             HHHHHHHHHHHHHHhCc-CHHHHHHHHHHHHHH-HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcccc--c-
Confidence            34556677777777776 555666555443332 345667899999999999999999999999887776422100  0 


Q ss_pred             CccccccccCCCCCCCCcccccCCCCcccccccccccccccCCCCCCCCCCcccccccccccccccccccccccCCCCcc
Q 008137          373 TVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAHKGNEYLPGACLIDEKSTDTLCSDEHRTYFISGCPSSF  452 (576)
Q Consensus       373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~  452 (576)
                                                                                                    ..
T Consensus       118 ------------------------------------------------------------------------------~s  119 (591)
T PTZ00207        118 ------------------------------------------------------------------------------GS  119 (591)
T ss_pred             ------------------------------------------------------------------------------Cc
Confidence                                                                                          00


Q ss_pred             hhHHHHHHHHHHHHhcCCcccccchhccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHH
Q 008137          453 GWLAVVFLGAYIITYSPGMGTAPWIVNSEIYPLRYRGVGGGIAAVSNWTSNLIVSLTFLTLTEALGSAGTFLLFAGFSLL  532 (576)
Q Consensus       453 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~i  532 (576)
                      .|...+..++.+.+.+ ...+.....+.+.+| +.||.+.|+......+|+++.+.+...+.. .++...|++.+++.++
T Consensus       120 ~~~l~l~r~l~G~G~~-~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~-~~~~~~fl~l~vl~~v  196 (591)
T PTZ00207        120 VVRLSVYNGLMTLGCM-LFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFS-DNTSAYFFFLMSFALV  196 (591)
T ss_pred             HHHHHHHHHHHHHHHH-HHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHH
Confidence            1233333333333322 122233345677886 789999999999999999865555554444 3455677777777777


Q ss_pred             HHHHHHhhccC
Q 008137          533 GLVAIYLLVPE  543 (576)
Q Consensus       533 ~~~~~~~~~~~  543 (576)
                      ..++.+.+++.
T Consensus       197 v~ll~~~~vr~  207 (591)
T PTZ00207        197 VGILAIVFMRL  207 (591)
T ss_pred             HHHHHHhheeC
Confidence            66666665543

>PRK09669 putative symporter YagG; Provisional

Probab=98.61  E-value=1.4e-06  Score=94.22  Aligned_cols=114  Identities=17%  Similarity=0.176  Sum_probs=91.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHh--cchHHHHHHHHHHHHhhhhhhhhhHHHHHHh
Q 008137           70 ELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFIGAIIMAI--APQPWVIILGRIFVGLGVGMASMTAPLYISE  147 (576)
Q Consensus        70 g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~--~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e  147 (576)
                      +.+.....+...++.+++++++||+|+|+.+..+.++..+..+...+  .++.+.+++..++.|++.+...+...++++|
T Consensus       267 ~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~am~ad  346 (444)
T PRK09669        267 TLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFIPPSNVWLIFALNILFNFIQNLTTPLQWSMFSD  346 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            55666777888899999999999999999999888766654443333  3567778888899999999999999999999


Q ss_pred             ccCcc-------hhhHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 008137          148 ASPAK-------IRGALVSANGFLITGGQFLAYLINLAFTKAP  183 (576)
Q Consensus       148 ~~~~~-------~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~~  183 (576)
                      ..+.+       ..|...+.++....+|..+|+.+++.+.+..
T Consensus       347 ~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~~  389 (444)
T PRK09669        347 VVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAWV  389 (444)
T ss_pred             hhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            88622       2367788899999999999999998876543

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=98.60  E-value=0.00023  Score=75.86  Aligned_cols=310  Identities=12%  Similarity=0.025  Sum_probs=161.4

Q ss_pred             HHHHHHHHhhhhhhhhHHHHHHHHHHhhcc-chhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHH
Q 008137           32 LSAGIGGLLFGYDTGVISGALLYIKEDFRD-VEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFIG  110 (576)
Q Consensus        32 ~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~  110 (576)
                      ..++++.++...+.-+.....+.+..+... +--..   +...-.-.+..++.++..|.+.||..|.++...+++..-++
T Consensus         5 ~~Ly~sh~ls~w~dR~w~Fa~~L~L~~i~p~sLl~~---siygl~~~~~~~~f~~~vG~~iD~~~Rl~~~~~~l~~Qn~s   81 (432)
T PF06963_consen    5 WRLYLSHFLSTWGDRMWEFAVPLFLISIFPGSLLPV---SIYGLVRSLSAILFGPWVGRWIDRSPRLKVIRTSLVVQNLS   81 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHH---HHHHHHHHHHHHHhhHHHHHHHhCCcchhhHHHHHHHHHHH
Confidence            345677777777777788888887776632 21122   33444455566777888899999999988877776554332


Q ss_pred             HHHHH------hcc------hHHHHHHHHHHHHhhhhhhh---hhH--HHHHHhcc------CcchhhHHHHHHHHHHHH
Q 008137          111 AIIMA------IAP------QPWVIILGRIFVGLGVGMAS---MTA--PLYISEAS------PAKIRGALVSANGFLITG  167 (576)
Q Consensus       111 ~~~~~------~~~------~~~~l~~~R~l~G~~~g~~~---~~~--~~~i~e~~------~~~~R~~~~~~~~~~~~~  167 (576)
                      ..+.+      +..      +-+....+..+. +..|...   ..+  .+.=.||.      +++.+.+..+...-.--+
T Consensus        82 v~~s~~~~~~l~~~~~~~~~~~~~~~~l~~~~-~~~~~i~~Las~~~~iavERDWVvvi~~~~~~~La~~NA~mRRIDL~  160 (432)
T PF06963_consen   82 VAASCALFLLLLSYPSSSSQSSWLFIALFALL-ILLGAIERLASIANTIAVERDWVVVIAGGDPGALARMNATMRRIDLF  160 (432)
T ss_pred             HHHHHHHHHHHHhCCccccccchHHHHHHHHH-HHHHHHHHHHHhhhhheeccchhhhhcCCChhhHHHHHHHHHHHHHH
Confidence            22211      111      112222222111 1111111   111  11123442      233345555555555566


Q ss_pred             HHHHHHHHHHHhcCCCchhHHHHHHhHHHHHHHHHH-Hhhc----cCChhHHhhcCCHHHHHHHHHHhCCchhhhHHHHH
Q 008137          168 GQFLAYLINLAFTKAPGTWRWMLGVAGLPAVVQFGL-MMML----PESPRWLYRQNKVDEARAILEKIYPADQVEEEVNL  242 (576)
Q Consensus       168 G~~l~~~l~~~l~~~~~~Wr~~f~v~~~~~~~~~~~-~~~l----~esp~~l~~~~~~~~~~~~l~~i~~~~~~~~~~~~  242 (576)
                      .-+++|++.|.+....+ .+...++.+...++.++. ++++    ...|. +..+++.++........ ...+...+...
T Consensus       161 ckllaPl~vG~l~t~~s-~~~~~~~i~~~N~~S~~vEy~~l~~VY~~~P~-L~~~~~~~~~~~~~~~~-~~~~~~~~~~~  237 (432)
T PF06963_consen  161 CKLLAPLFVGLLMTFAS-PVIAAIFIAGWNLASVFVEYFLLARVYNSVPA-LAVKKRSSESESSSDEE-SSSESSSDPSI  237 (432)
T ss_pred             HHHHHHHHHHHHhhccC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhChH-hcCCCCCcccccccccc-ccccccchhhH
Confidence            78899999999988766 888888888877777665 3332    22232 22221111110000000 00000000000


Q ss_pred             HHHHHHhhhhhhcccchhhHHHhhhhcccchhhhhhHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcCCchhHHHHHHHHH
Q 008137          243 LKQSVENEKAEEGLIGKDMISRLKGAFGNKIVRRGLYAGVTVQVAQQFVGINTVMYYSPTIVQFAGFASKSTALALSLVT  322 (576)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (576)
                      .+ ...+       ..+.....++..++++.+..     .+...+..+.. -.+...+..|+...|. +....+..-...
T Consensus       238 ~~-~~~~-------~~~~~~~~w~~Y~~q~vfla-----s~alalLY~TV-Lsf~~lmt~yl~~~G~-s~~~igi~R~~g  302 (432)
T PF06963_consen  238 LK-RLWN-------PLRTIIRGWRTYFRQPVFLA-----SFALALLYFTV-LSFGGLMTAYLKSQGY-SPSVIGIFRGLG  302 (432)
T ss_pred             HH-HHHH-------HHHHHhccHHHHHhCHHHHH-----HHHHHHHHHHH-hcCcHHHHHHHHHCCC-CHHHHHHHHHHH
Confidence            00 0000       00011133444444443322     22222222222 2234445566777766 777778888888


Q ss_pred             hHHHHHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHHHHH
Q 008137          323 SGLNALGSIVSMAFVDKYGRRRLMIVSMFGLSSCLVALAVV  363 (576)
Q Consensus       323 ~~~~~ig~~~~g~l~dk~grr~~~~~~~~~~~~~~~~~~~~  363 (576)
                      .+.++.|.++..++.+|+|..+.-.++...-..++.+....
T Consensus       303 av~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~  343 (432)
T PF06963_consen  303 AVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVS  343 (432)
T ss_pred             HHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHH
Confidence            88999999999999999998887777766665555544433

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=98.60  E-value=3.9e-07  Score=100.51  Aligned_cols=143  Identities=18%  Similarity=0.158  Sum_probs=110.7

Q ss_pred             chhHHHHHHHHHhHHHHHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccccccCCCCCCCCc
Q 008137          311 SKSTALALSLVTSGLNALGSIVSMAFVDKYGRRRLMIVSMFGLSSCLVALAVVFFQAAIHAPTVSQIESSHFGGNNTCPA  390 (576)
Q Consensus       311 ~~~~~~~~~~~~~~~~~ig~~~~g~l~dk~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  390 (576)
                      +.....+...+..++.++|.++.|.++||+|||+++++++++..++.++.++....                        
T Consensus       116 ~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~~~------------------------  171 (521)
T KOG0255|consen  116 SSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAPNY------------------------  171 (521)
T ss_pred             cHhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhCcH------------------------
Confidence            55666677788899999999999999999999999999999998888766665331                        


Q ss_pred             ccccCCCCcccccccccccccccCCCCCCCCCCcccccccccccccccccccccccCCCCcchhHHHHHHHHHHHHhcCC
Q 008137          391 YITDGNAKSWNCMDCLKAKCGFCAHKGNEYLPGACLIDEKSTDTLCSDEHRTYFISGCPSSFGWLAVVFLGAYIITYSPG  470 (576)
Q Consensus       391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~  470 (576)
                                                                                     +...+.-++.+ .+..+
T Consensus       172 ---------------------------------------------------------------~~~~~~Rfl~G-~~~~~  187 (521)
T KOG0255|consen  172 ---------------------------------------------------------------WMFLIFRFLSG-FFGSG  187 (521)
T ss_pred             ---------------------------------------------------------------HHHHHHHHHHH-hhccc
Confidence                                                                           22233333333 33335


Q ss_pred             cccccchhccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHhhccCCC
Q 008137          471 MGTAPWIVNSEIYPLRYRGVGGGIAAVSNWTSNLIVSLTFLTLTEALGSAGTFLLFAGFSLLGLVAIYLLVPETK  545 (576)
Q Consensus       471 ~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~  545 (576)
                      ...+.+.+..|.++++.|+.+..+ ....+.++.+++...+++..  +|+..+++..+..++.+++ +++.||.+
T Consensus       188 ~~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~--~Wr~~~~~~~~~~~~~~~~-~~l~~Es~  258 (521)
T KOG0255|consen  188 PLTVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR--DWRWLFWIISIPSGLFLLL-WFLPPESP  258 (521)
T ss_pred             hhHHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHH-HHccCcCh
Confidence            555677888999999999999999 88889999999999998887  7888888888877776666 55565764

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=98.60  E-value=3e-06  Score=85.98  Aligned_cols=175  Identities=20%  Similarity=0.181  Sum_probs=135.2

Q ss_pred             hhchhhHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhcc-CchHH
Q 008137           21 VWTTPYIMKLALSAGIGGLLFGYDTGVISGALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRF-GRKIS   99 (576)
Q Consensus        21 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~-Grr~~   99 (576)
                      .|+++.-|.+.+...+-.+.    .+..-.-+|.|..|-|.+..+.   |++.+...+.....++....+++|. .+|+.
T Consensus       204 vw~~~~aW~vtLfmGlqS~~----~Y~~~~WLP~ili~~G~sa~~a---G~llsl~~l~~~~~~ll~P~la~R~~n~r~~  276 (395)
T COG2807         204 VWRSPLAWQVTLFMGLQSLL----YYIVIGWLPAILIDRGLSAAEA---GSLLSLMQLAQLPTALLIPLLARRSKNQRPL  276 (395)
T ss_pred             cccCchhHHHHHHHHhhHHH----HHHHHHHHHHHHHHcCCCHHHh---hhHHHHHHHHHHHHHHHHHHHHHHhcccchH
Confidence            45566667666655554443    3444455899999999999999   9999999999999999999999975 57888


Q ss_pred             HHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchh-hHHHHHHHHHHHHHHHHHHHHHHH
Q 008137          100 LLGADVLFFIGAIIMAIAPQPWVIILGRIFVGLGVGMASMTAPLYISEASPAKIR-GALVSANGFLITGGQFLAYLINLA  178 (576)
Q Consensus       100 ~~~~~~~~~i~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R-~~~~~~~~~~~~~G~~l~~~l~~~  178 (576)
                      .+...+++.++.+.+.+.+.-..+.- -++.|+|.|+.++.+.+.+.+..+..++ ++..+..|....+=...||.+.|+
T Consensus       277 ~~~~~~~~l~G~~G~~~~P~~~~~lw-~~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~  355 (395)
T COG2807         277 VVLALLLMLVGLVGLLLAPGQLPILW-ALLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGF  355 (395)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhHHHHH-HHHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhH
Confidence            88888888888888878775443333 4999999999999999999999865554 444455554444445578999999


Q ss_pred             hcCCCchhHHHHHHhHHHHHHHHHH
Q 008137          179 FTKAPGTWRWMLGVAGLPAVVQFGL  203 (576)
Q Consensus       179 l~~~~~~Wr~~f~v~~~~~~~~~~~  203 (576)
                      +.|..++|+..+.......++..+.
T Consensus       356 lhDa~gsw~~~~~~l~~~~i~m~i~  380 (395)
T COG2807         356 LHDATGSWSAPLVLLALATLLMLIF  380 (395)
T ss_pred             HHHhcCChHHHHHHHHHHHHHHHHH
Confidence            9999999999988887777665555

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.59  E-value=5.4e-08  Score=99.28  Aligned_cols=150  Identities=17%  Similarity=0.055  Sum_probs=120.8

Q ss_pred             chhHHHHHHHHHhHHHHHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccccccCCCCCCCCc
Q 008137          311 SKSTALALSLVTSGLNALGSIVSMAFVDKYGRRRLMIVSMFGLSSCLVALAVVFFQAAIHAPTVSQIESSHFGGNNTCPA  390 (576)
Q Consensus       311 ~~~~~~~~~~~~~~~~~ig~~~~g~l~dk~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  390 (576)
                      ...+.+.+.....+.+++..++.|.+.||+|+|..+++|+.++..+.+++++....                        
T Consensus       104 e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~sy------------------------  159 (464)
T KOG3764|consen  104 ENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNSY------------------------  159 (464)
T ss_pred             cccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcchh------------------------
Confidence            56677889999999999999999999999999999999999999999888876431                        


Q ss_pred             ccccCCCCcccccccccccccccCCCCCCCCCCcccccccccccccccccccccccCCCCcchhHHHHHHHHHHHHhcCC
Q 008137          391 YITDGNAKSWNCMDCLKAKCGFCAHKGNEYLPGACLIDEKSTDTLCSDEHRTYFISGCPSSFGWLAVVFLGAYIITYSPG  470 (576)
Q Consensus       391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~  470 (576)
                                                                                     +..+++-.+-+.+....
T Consensus       160 ---------------------------------------------------------------~~l~vAR~LQgvgsA~~  176 (464)
T KOG3764|consen  160 ---------------------------------------------------------------PMLFVARSLQGVGSAFA  176 (464)
T ss_pred             ---------------------------------------------------------------HHHHHHHHHhhhhHHHH
Confidence                                                                           22233333333333322


Q ss_pred             cccccchhccccccccc-cccchhHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHhhccCCCCCC
Q 008137          471 MGTAPWIVNSEIYPLRY-RGVGGGIAAVSNWTSNLIVSLTFLTLTEALGSAGTFLLFAGFSLLGLVAIYLLVPETKGLA  548 (576)
Q Consensus       471 ~~~~~~~~~~e~~p~~~-rg~~~g~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  548 (576)
                       .....++++|.||.+. |+.++|+.-.+..+|-.++|.+.|.++|..|++.+|++.++++++...+-++.++.++..+
T Consensus       177 -~tsglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~vi~p~~~~~  254 (464)
T KOG3764|consen  177 -DTSGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLLVIEPTEMDP  254 (464)
T ss_pred             -HhhhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHheeCccccCc
Confidence             2345578889998765 6999999999999999999999999999999999999999999998888777666555443

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=98.59  E-value=8.4e-06  Score=85.35  Aligned_cols=135  Identities=18%  Similarity=0.178  Sum_probs=100.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhhhhhhhhhHHHHHHhcc
Q 008137           70 ELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFIGAIIMAIAPQPWVIILGRIFVGLGVGMASMTAPLYISEAS  149 (576)
Q Consensus        70 g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~  149 (576)
                      +.+.-+-.+...+.-+.+.++.+|+..+.=..+..+++.++.++.+++++.+.-+++-.+.+++.|........+.+ .+
T Consensus        62 ~~Vlladi~P~l~~Kl~aP~fi~~v~y~~Ri~~~~~l~~~g~l~va~~~~v~~~l~Gv~las~ssg~GE~tfL~lt~-~y  140 (402)
T PF02487_consen   62 GAVLLADILPSLLVKLIAPFFIHRVPYWIRILICVALSAAGMLLVAFSPSVWVRLLGVVLASLSSGLGEVTFLSLTH-FY  140 (402)
T ss_pred             hHHHHHHHHHHHHHHHHhHhhhhhccchHHHHHHHHHHHHHHhheeeccchhHHHHHHHHHhhhhhhhHHHHHHHHH-hc
Confidence            44556666777777788888999887655556667788889999999999999999999999999988888777644 55


Q ss_pred             CcchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHhHHHHHHHHHHHh-hccC
Q 008137          150 PAKIRGALVSANGFLITGGQFLAYLINLAFTKAPGTWRWMLGVAGLPAVVQFGLMM-MLPE  209 (576)
Q Consensus       150 ~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~Wr~~f~v~~~~~~~~~~~~~-~l~e  209 (576)
                      ++    ...+.+..+.+.++++|+..-..+....-+-|..+++...+.++..+.++ .+|.
T Consensus       141 ~~----~~l~~wssGTG~aGl~Ga~~y~~lT~~g~s~~~tll~~~~lp~~~~~~~f~~L~~  197 (402)
T PF02487_consen  141 GK----SSLSAWSSGTGGAGLVGALYYLGLTTLGLSPRTTLLIMLVLPAIFLLSYFFLLPS  197 (402)
T ss_pred             Cc----cccccccCCcChhhHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            53    35788888999899999887777766322357778777776665555544 4443

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=98.56  E-value=2.9e-07  Score=92.98  Aligned_cols=131  Identities=17%  Similarity=0.104  Sum_probs=100.8

Q ss_pred             HHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHH
Q 008137           78 AGAIFGAGFGGWINDRFGRKISLLGADVLFFIGAIIMAIAPQPWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGAL  157 (576)
Q Consensus        78 ~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~  157 (576)
                      +.-.-|.++.+++.||+|||+++..+.+++++..++.-.+.+-....+.-|..-.+..+.+.+++.|..|.+|.+-|+..
T Consensus       392 laefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~~rn~~tvllf~arafisg~fqvaYvYtPEVyPTavRatg  471 (528)
T KOG0253|consen  392 LAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCKTRNAYTVLLFTARAFISGAFQVAYVYTPEVYPTAVRATG  471 (528)
T ss_pred             HhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHhchheEEEEecCcccchhhhhcc
Confidence            44556788999999999999999999999999999888876543333333333334444566788999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHhHHHHHHHHHHHhhccCCh
Q 008137          158 VSANGFLITGGQFLAYLINLAFTKAPGTWRWMLGVAGLPAVVQFGLMMMLPESP  211 (576)
Q Consensus       158 ~~~~~~~~~~G~~l~~~l~~~l~~~~~~Wr~~f~v~~~~~~~~~~~~~~l~esp  211 (576)
                      .|.-....-+|.++.|+++ ...+.  +-..+..+.+.+.++..+...++|-.+
T Consensus       472 vGtcSsmaRIggI~~p~iA-~~~e~--s~sl~i~vy~~~~ilagIavcffPiEt  522 (528)
T KOG0253|consen  472 VGTCSSMARIGGIFSPVIA-MRAEL--STSLPIFVYGALFILAGIAVCFFPIET  522 (528)
T ss_pred             hhhhhhHHhhhhhhhhHHH-HHhcc--ceeehHHHHHHHHHHHHHHheeeeecc
Confidence            9999999999999999999 33332  244666777777777777777777543

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.53  E-value=1.4e-06  Score=93.92  Aligned_cols=148  Identities=17%  Similarity=0.067  Sum_probs=119.6

Q ss_pred             CchhHHHHHHHHHhHHHHHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccccccCCCCCCCC
Q 008137          310 ASKSTALALSLVTSGLNALGSIVSMAFVDKYGRRRLMIVSMFGLSSCLVALAVVFFQAAIHAPTVSQIESSHFGGNNTCP  389 (576)
Q Consensus       310 ~~~~~~~~~~~~~~~~~~ig~~~~g~l~dk~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  389 (576)
                      .+..+-+++......+.+++.+.+|++.||+|-|+++..+.++.+++.++..+.....                      
T Consensus        70 ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~----------------------  127 (466)
T KOG2532|consen   70 WSSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIG----------------------  127 (466)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhc----------------------
Confidence            3666777888888999999999999999999999999999999998888887775421                      


Q ss_pred             cccccCCCCcccccccccccccccCCCCCCCCCCcccccccccccccccccccccccCCCCcchhHHHHHHHHHHHHhcC
Q 008137          390 AYITDGNAKSWNCMDCLKAKCGFCAHKGNEYLPGACLIDEKSTDTLCSDEHRTYFISGCPSSFGWLAVVFLGAYIITYSP  469 (576)
Q Consensus       390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~  469 (576)
                                                                                     .+..++.-++-+.+.+ 
T Consensus       128 ---------------------------------------------------------------~~~~~~~R~lqGl~~g-  143 (466)
T KOG2532|consen  128 ---------------------------------------------------------------FYLLLVLRFLQGLGQG-  143 (466)
T ss_pred             ---------------------------------------------------------------chhhHHHHHHhHHHHh-
Confidence                                                                           1323333344443333 


Q ss_pred             CcccccchhccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHh-hccchhhHHHHHHHHHHHHHHHhhccC
Q 008137          470 GMGTAPWIVNSEIYPLRYRGVGGGIAAVSNWTSNLIVSLTFLTLTEA-LGSAGTFLLFAGFSLLGLVAIYLLVPE  543 (576)
Q Consensus       470 ~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~g~~~~~~~~~~l~~~-~g~~~~~~~~~~~~~i~~~~~~~~~~~  543 (576)
                      ...|....+.+.-.|+++|++..++......+|.++.-++.|.+.+. .||+..|++.+++.++..++.+++..+
T Consensus       144 ~~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~~d  218 (466)
T KOG2532|consen  144 VLFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFYSD  218 (466)
T ss_pred             HHHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhcC
Confidence            33456667889999999999999999999999999999999999999 999999999999999987776665543

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=98.51  E-value=5.9e-07  Score=98.71  Aligned_cols=153  Identities=20%  Similarity=0.156  Sum_probs=105.1

Q ss_pred             HhhhHHHHHhhcCCchhHHHHHHHHHhHHHHHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccc
Q 008137          297 MYYSPTIVQFAGFASKSTALALSLVTSGLNALGSIVSMAFVDKYGRRRLMIVSMFGLSSCLVALAVVFFQAAIHAPTVSQ  376 (576)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dk~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  376 (576)
                      ...++.+.++.|. + ....++.....++..++.++.|.++|.+|||+.++.+.++..++.+..+.....          
T Consensus        64 a~~l~~I~~diG~-~-~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA~~~----------  131 (599)
T PF06609_consen   64 ASILPYINADIGG-S-DNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATAQNM----------  131 (599)
T ss_pred             HHHHHHHHHhcCC-C-ccchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcCCcH----------
Confidence            3445666677766 3 334455566778888999999999999999999999999988888876644221          


Q ss_pred             cccccCCCCCCCCcccccCCCCcccccccccccccccCCCCCCCCCCcccccccccccccccccccccccCCCCcchhHH
Q 008137          377 IESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAHKGNEYLPGACLIDEKSTDTLCSDEHRTYFISGCPSSFGWLA  456 (576)
Q Consensus       377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~  456 (576)
                                                                                                   -..
T Consensus       132 -----------------------------------------------------------------------------~~~  134 (599)
T PF06609_consen  132 -----------------------------------------------------------------------------NTF  134 (599)
T ss_pred             -----------------------------------------------------------------------------HHH
Confidence                                                                                         122


Q ss_pred             HHHHHHHHHHhcCCcccccchhccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHH
Q 008137          457 VVFLGAYIITYSPGMGTAPWIVNSEIYPLRYRGVGGGIAAVSNWTSNLIVSLTFLTLTEALGSAGTFLLFAGFSLLGLVA  536 (576)
Q Consensus       457 ~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~~  536 (576)
                      +....+.+++.  +........++|+.|.+.|+.+.++.....-....+++.+...+..+.+|++.|++.+++..++++.
T Consensus       135 iag~~l~Gvga--G~~~~~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw~~~~~~i~~~i~~vl  212 (599)
T PF06609_consen  135 IAGMVLYGVGA--GVQELAALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAHSGWRWIFYIFIIWSGIALVL  212 (599)
T ss_pred             HHHHHHHHHhh--HHHHHHHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccCCCcchHHHHHHHHHHHHHHH
Confidence            34444444432  3333444567999999999887776665444444456666666666679999999988887777665


Q ss_pred             HHhh
Q 008137          537 IYLL  540 (576)
Q Consensus       537 ~~~~  540 (576)
                      .+++
T Consensus       213 ~~~f  216 (599)
T PF06609_consen  213 IFFF  216 (599)
T ss_pred             HHHH
Confidence            4443

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]

Probab=98.49  E-value=2.1e-05  Score=79.94  Aligned_cols=146  Identities=18%  Similarity=0.123  Sum_probs=91.2

Q ss_pred             HHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhh-----ccCchHHHHH
Q 008137           28 MKLALSAGIGGLLFGYDTGVISGALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWIND-----RFGRKISLLG  102 (576)
Q Consensus        28 ~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~d-----r~Grr~~~~~  102 (576)
                      ...+..+.+-+++++...+..+ .+|.+.+.=+.+.++.   +. .+..+..+.+ -+++.++.|     |+|||+.-+.
T Consensus        30 ~~~illLl~LYllQGiP~GL~~-~iP~lL~ak~vSyt~~---a~-fS~ay~P~sL-KllWaPiVDs~y~k~~GrrksWvv  103 (510)
T KOG3574|consen   30 RSSILLLLFLYLLQGIPLGLIG-AIPLLLQAKGVSYTSQ---AI-FSFAYWPFSL-KLLWAPIVDSVYSKRFGRRKSWVV  103 (510)
T ss_pred             hhhHHHHHHHHHHcCCchhHhh-hhHHHhcCCCcchhhh---hh-hhhhhhHHHH-HHHHHhhhHHHHHHhhccccceee
Confidence            3445555566788999988888 8999999777777666   32 2222222222 578899999     9999886433


Q ss_pred             -HHHHHHHHHHHHHh-----------cchHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHH
Q 008137          103 -ADVLFFIGAIIMAI-----------APQPWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQF  170 (576)
Q Consensus       103 -~~~~~~i~~~~~~~-----------~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~  170 (576)
                       +..+.+....+.+.           .++...+...-++.-+..+.--.+.-.+.-....+++-|.+......+.+.|.+
T Consensus       104 p~q~llG~~mllLs~~v~~~~g~ng~~p~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~e~lgyaST~q~Vg~~~Gyf  183 (510)
T KOG3574|consen  104 PCQYLLGLFMLLLSYLVDRGLGGNGGLPNVVALTLLFLLLNFLAATQDIAVDGWALTMLSRENLGYASTCQSVGQTAGYF  183 (510)
T ss_pred             ehHHHHHHHHHHHhhCCCcccccCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCHhhcCchhHHHHHHHhhhHH
Confidence             22222222222222           123333444445555656655555666666677788888888888888888877


Q ss_pred             HHHHHHHHh
Q 008137          171 LAYLINLAF  179 (576)
Q Consensus       171 l~~~l~~~l  179 (576)
                      ++..+-..+
T Consensus       184 L~~~ifLaL  192 (510)
T KOG3574|consen  184 LGNVVFLAL  192 (510)
T ss_pred             hhcceeeEe
Confidence            776655444

>TIGR00806 rfc RFC reduced folate carrier

Probab=98.49  E-value=5.1e-06  Score=88.32  Aligned_cols=157  Identities=10%  Similarity=0.071  Sum_probs=114.2

Q ss_pred             HHhhhHHHHHhhcCCchhH-HHHHHHHHhHHHHHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCc
Q 008137          296 VMYYSPTIVQFAGFASKST-ALALSLVTSGLNALGSIVSMAFVDKYGRRRLMIVSMFGLSSCLVALAVVFFQAAIHAPTV  374 (576)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ig~~~~g~l~dk~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  374 (576)
                      ..+..|.+.++.+. +..+ .+.+...+..+.++..+.+|+++||+|.|+++..+.+...+..+++++....        
T Consensus        45 ~s~a~p~L~~elgl-T~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~Sl--------  115 (511)
T TIGR00806        45 ESFITPYLLTVLNF-TEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGTSV--------  115 (511)
T ss_pred             HHHHHHHHHHHcCC-CHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHH--------
Confidence            44456666677777 5556 8888888999999999999999999999999999999888888888776331        


Q ss_pred             cccccccCCCCCCCCcccccCCCCcccccccccccccccCCCCCCCCCCcccccccccccccccccccccccCCCCcchh
Q 008137          375 SQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAHKGNEYLPGACLIDEKSTDTLCSDEHRTYFISGCPSSFGW  454 (576)
Q Consensus       375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~  454 (576)
                                                                                                     +
T Consensus       116 -------------------------------------------------------------------------------~  116 (511)
T TIGR00806       116 -------------------------------------------------------------------------------W  116 (511)
T ss_pred             -------------------------------------------------------------------------------H
Confidence                                                                                           2


Q ss_pred             HHHHHHHHHHHHhcCCcccccchhccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHhhccchhhH---HHHHHHH
Q 008137          455 LAVVFLGAYIITYSPGMGTAPWIVNSEIYPLRYRGVGGGIAAVSNWTSNLIVSLTFLTLTEALGSAGTFL---LFAGFSL  531 (576)
Q Consensus       455 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~---~~~~~~~  531 (576)
                      ...+.-++++.+-+..+  ....++...+|++.|+++.|+.+....+|.++++++.+. ....||+.-..   +..+...
T Consensus       117 ~L~i~R~llGvaEA~~~--A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~ql-l~s~gWr~y~~Ln~Isl~s~~  193 (511)
T TIGR00806       117 HMQLMEVFYSVTMAARI--AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQL-LVTLGWISYSTLNIISLVFMT  193 (511)
T ss_pred             HHHHHHHHHHHHHHHHH--HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCchhHHHHHHHHHHHHH
Confidence            33344444444444333  556788899999999999999999999999999999998 55667765322   2333333


Q ss_pred             HHHHHHHhhccCC
Q 008137          532 LGLVAIYLLVPET  544 (576)
Q Consensus       532 i~~~~~~~~~~~~  544 (576)
                      +++++. +++|..
T Consensus       194 ~a~~~a-~~LP~~  205 (511)
T TIGR00806       194 FSVFLA-LFLKRP  205 (511)
T ss_pred             HHHHHH-HhCCCC
Confidence            444444 456633

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=98.41  E-value=1.1e-06  Score=93.13  Aligned_cols=165  Identities=16%  Similarity=0.208  Sum_probs=135.9

Q ss_pred             HhhhhhhhhHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHhcc
Q 008137           39 LLFGYDTGVISGALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFIGAIIMAIAP  118 (576)
Q Consensus        39 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~  118 (576)
                      ++.+...+.+-..+---.||.+....-.   |........|-++.-++.+++..++|+-+++.+++....+=.+..+..+
T Consensus       381 v~mG~g~~lv~tFLfWHled~~~~~~Lf---Gv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L~  457 (618)
T KOG3762|consen  381 VVMGAGVGLVFTFLFWHLEDLGGIKTLF---GVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYLQ  457 (618)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcCCcceee---eehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHhc
Confidence            3344443443333433456666444444   7777788888888899999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHH-HHHHHHHHHHHHHHhcCCCchhHHHHHHhHHHH
Q 008137          119 QPWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFL-ITGGQFLAYLINLAFTKAPGTWRWMLGVAGLPA  197 (576)
Q Consensus       119 ~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~-~~~G~~l~~~l~~~l~~~~~~Wr~~f~v~~~~~  197 (576)
                      |+|+.+...+++|+..+..|.++.+|++...||+-|..+.++.+.. .++|--+|.+++|.+....+ -|..|...++.+
T Consensus       458 n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg-~~ttf~~~giAc  536 (618)
T KOG3762|consen  458 NPWMVLPIEILQGITHALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFG-ARTTFRIFGIAC  536 (618)
T ss_pred             CchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheeeh-hHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999988654 67788899999999998887 899999988888


Q ss_pred             HHHHHHHhhc
Q 008137          198 VVQFGLMMML  207 (576)
Q Consensus       198 ~~~~~~~~~l  207 (576)
                      ++.++....+
T Consensus       537 l~~l~~~~~i  546 (618)
T KOG3762|consen  537 LVTLALFISI  546 (618)
T ss_pred             HHHHHHHHHh
Confidence            8776664443

>PRK11462 putative transporter; Provisional

Probab=98.37  E-value=5.3e-05  Score=82.29  Aligned_cols=136  Identities=11%  Similarity=0.120  Sum_probs=87.7

Q ss_pred             hhhhhHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHhcc--hH
Q 008137           43 YDTGVISGALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFIGAIIMAIAP--QP  120 (576)
Q Consensus        43 ~~~~~~~~~~~~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~--~~  120 (576)
                      ......+.....+.+.....+...   +.+.+.+.++..++.+++++++||+|+|+.+..+..+.++..++..+.+  +.
T Consensus       242 ~~~~~~~~~~~y~~~y~~g~~~~~---~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~  318 (460)
T PRK11462        242 LAVCVRGGAMMYYVTWILGTPEVF---VAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLAVISLAMFFVPMQAS  318 (460)
T ss_pred             HHHHHHHhHhhhhhhhhcCChHHH---HHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhchhHH
Confidence            333333444444444443333333   6677788889999999999999999999887765555444444433332  23


Q ss_pred             HHHHHHHHHHHhhhhhhhhhHHHHHHhccCc-------chhhHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 008137          121 WVIILGRIFVGLGVGMASMTAPLYISEASPA-------KIRGALVSANGFLITGGQFLAYLINLAFTK  181 (576)
Q Consensus       121 ~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~-------~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~  181 (576)
                      ..+++.-++.|++.+...+...++++|..+.       +..|...+......-+|..+++.+.+.+..
T Consensus       319 ~~~~~~~~l~g~~~~~~~~l~~~m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~iL~  386 (460)
T PRK11462        319 ITMFVFIFVIGVLHQLVTPIQWVMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGWMLA  386 (460)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445555777888877777777777777652       222555677777788888888877776654

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=98.35  E-value=4.6e-05  Score=79.16  Aligned_cols=190  Identities=18%  Similarity=0.285  Sum_probs=142.4

Q ss_pred             CCcchHHHHHHHhhchhhHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHH
Q 008137            9 ASKTEFTECWNIVWTTPYIMKLALSAGIGGLLFGYDTGVISGALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGG   88 (576)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G   88 (576)
                      .++.+..+.+.+.+..+.-.+.+..++++.+.......+.   -|+=.+-|+.+..++   ..+.+....|..+|-...|
T Consensus       192 ~~~~~f~~a~~~~~~~~~a~~f~~fl~l~t~a~~~QD~iL---EPygg~Vfgmsv~eT---T~Lta~~~~G~L~G~~~~g  265 (403)
T PF03209_consen  192 RPRPPFREAWRQVWASPQARRFFVFLFLGTLAFFMQDVIL---EPYGGEVFGMSVGET---TRLTAFWGGGTLLGMLLAG  265 (403)
T ss_pred             CCCccHHHHHHHHHhCCChhHHHHHHHHHHHHHHhhHHHc---CCchhHHcCCCHHHH---HHHHHHHHHHHHHHHHHHH
Confidence            3445556666666655555555555555554444443322   244456788999998   8899999999999999999


Q ss_pred             Hhhh-ccCchHHHHHHHHHHHHHHHHH---HhcchHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHH
Q 008137           89 WIND-RFGRKISLLGADVLFFIGAIIM---AIAPQPWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFL  164 (576)
Q Consensus        89 ~l~d-r~Grr~~~~~~~~~~~i~~~~~---~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~  164 (576)
                      ++.. |.++++.-.+++.+..++..+.   +...+.+.+...-++.|++.|.....+.+.+.+...+++.|.++|.+...
T Consensus       266 ~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~~~~~~~~~~~~l~G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaa  345 (403)
T PF03209_consen  266 FLLSRRLGKKRTAALGCLLGALAFALIILAGPLGSPWLFRPGVFLLGLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAA  345 (403)
T ss_pred             HHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHH
Confidence            9888 6777888778877776666554   44468899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhcCCC---------chhHHHHHHhHHHHHHHHHHH
Q 008137          165 ITGGQFLAYLINLAFTKAP---------GTWRWMLGVAGLPAVVQFGLM  204 (576)
Q Consensus       165 ~~~G~~l~~~l~~~l~~~~---------~~Wr~~f~v~~~~~~~~~~~~  204 (576)
                      +.+...++..+++.+.|..         .++-.+|.+-+++.++.+++.
T Consensus       346 QA~A~Glg~~~GG~~~D~~~~~~~~~~~~aY~~VF~lEa~ll~~a~~ll  394 (403)
T PF03209_consen  346 QAIARGLGTFLGGALRDLVRALFGNSPALAYGVVFALEAVLLLAALVLL  394 (403)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999988876421         136667777666655555443

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>TIGR00788 fbt folate/biopterin transporter

Probab=98.35  E-value=3.6e-06  Score=91.60  Aligned_cols=150  Identities=11%  Similarity=0.193  Sum_probs=119.4

Q ss_pred             HhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHhc----------chHHHHHHH
Q 008137           57 EDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFIGAIIMAIA----------PQPWVIILG  126 (576)
Q Consensus        57 ~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~~----------~~~~~l~~~  126 (576)
                      +.+|.++...   |++.....++..++....+++.+|++.|+++.++.++.+++.+.....          ++.+.++..
T Consensus       281 ~~lG~s~~~~---G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~  357 (468)
T TIGR00788       281 QCLPGGPSFS---GMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGD  357 (468)
T ss_pred             ccCCCCcchh---hhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeeh
Confidence            4577888887   999999999999999999999999999999999999999888654311          344455666


Q ss_pred             HHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCc------hhHHHHHH-hHHHHHH
Q 008137          127 RIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFTKAPG------TWRWMLGV-AGLPAVV  199 (576)
Q Consensus       127 R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~------~Wr~~f~v-~~~~~~~  199 (576)
                      -++.+++.+..+.....++++..|+++++...+++++..++|..+++.+++.+.+..|      +.+|...+ ..+..++
T Consensus       358 ~~l~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g~~~~~~~~~~~~i~i~~~~~l~  437 (468)
T TIGR00788       358 SIIAEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMETIGITCDNSNNLWLLILGHSLAPLL  437 (468)
T ss_pred             hHHHHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHHHHHHHHH
Confidence            7899999999999999999999999999999999999999999999999998876543      23333333 3333444


Q ss_pred             HHHHHhhccC
Q 008137          200 QFGLMMMLPE  209 (576)
Q Consensus       200 ~~~~~~~l~e  209 (576)
                      .+...+++|+
T Consensus       438 ~l~~~~llP~  447 (468)
T TIGR00788       438 PLPLLHLLPR  447 (468)
T ss_pred             HHHHHHhCCC
Confidence            4444557786

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=98.29  E-value=7e-06  Score=90.46  Aligned_cols=140  Identities=15%  Similarity=0.053  Sum_probs=106.9

Q ss_pred             HHHHHHHhHHHHHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccccccCCCCCCCCcccccC
Q 008137          316 LALSLVTSGLNALGSIVSMAFVDKYGRRRLMIVSMFGLSSCLVALAVVFFQAAIHAPTVSQIESSHFGGNNTCPAYITDG  395 (576)
Q Consensus       316 ~~~~~~~~~~~~ig~~~~g~l~dk~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  395 (576)
                      +.+.....+++.++.++.|+++|++|||+.+..+.+...++.++.......                             
T Consensus        92 s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a~~~-----------------------------  142 (513)
T KOG0254|consen   92 GLLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALAPSW-----------------------------  142 (513)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhH-----------------------------
Confidence            677888899999999999999999999999999999999998888877431                             


Q ss_pred             CCCcccccccccccccccCCCCCCCCCCcccccccccccccccccccccccCCCCcchhHHHHHHHHHHHHhcCCccccc
Q 008137          396 NAKSWNCMDCLKAKCGFCAHKGNEYLPGACLIDEKSTDTLCSDEHRTYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAP  475 (576)
Q Consensus       396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  475 (576)
                                                                                +...+.-++.+++.+... .+.
T Consensus       143 ----------------------------------------------------------~~l~~GR~l~G~g~G~~~-~~~  163 (513)
T KOG0254|consen  143 ----------------------------------------------------------YQLIVGRILTGLGVGGAS-VLA  163 (513)
T ss_pred             ----------------------------------------------------------HHHHHHHHHhccchhhhh-hcc
Confidence                                                                      333444444444444332 344


Q ss_pred             chhccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHhh--ccchhhHHHHHHHHHHHHHHHhhccCCC
Q 008137          476 WIVNSEIYPLRYRGVGGGIAAVSNWTSNLIVSLTFLTLTEAL--GSAGTFLLFAGFSLLGLVAIYLLVPETK  545 (576)
Q Consensus       476 ~~~~~e~~p~~~rg~~~g~~~~~~~~g~~~~~~~~~~l~~~~--g~~~~~~~~~~~~~i~~~~~~~~~~~~~  545 (576)
                      ..+.+|+.|++.||...++.+....+|..++ .+.+...++.  +|+..+.+..+.+++..+. .+++||+.
T Consensus       164 piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~-~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~-~~~~pesp  233 (513)
T KOG0254|consen  164 PVYISEIAPAHIRGTLVSLYQLFITIGILLG-YCINYGTSKVYAGWRIPLGLALIPAVILALG-MLFLPESP  233 (513)
T ss_pred             hhhHhhcCChhhhHHHHHHHHHHHHHHHHHH-HHHhhhhccCCccHHHHHHHHHHHHHHHHHH-HHhCCCCh
Confidence            5788999999999999999998888777666 6666666553  7887777777777777666 67788763

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=98.28  E-value=3e-05  Score=82.57  Aligned_cols=143  Identities=21%  Similarity=0.251  Sum_probs=109.2

Q ss_pred             HHHHhhhhhhhhHHHHHHHHHHh-hccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHH
Q 008137           36 IGGLLFGYDTGVISGALLYIKED-FRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFIGAIIM  114 (576)
Q Consensus        36 l~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~  114 (576)
                      +..++......+.+.+..++.+. ++.++...   .+.......+..++.+++.++.+|+|+|+++.++.+++.++.++.
T Consensus       243 ~~~l~~~~~~~i~~s~~~yy~~y~lg~~~l~~---~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~  319 (467)
T COG2211         243 LMNLLLFIAFNIRGSIMVYYVTYVLGDPELFA---YLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLL  319 (467)
T ss_pred             HHHHHHHHHHHHHhhhhheeEEEEcCChHHHH---HHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHH
Confidence            34444555556666666665443 33444444   677777788888889999999999999999999999999999988


Q ss_pred             Hhcc--hHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcch-----h--hHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 008137          115 AIAP--QPWVIILGRIFVGLGVGMASMTAPLYISEASPAKI-----R--GALVSANGFLITGGQFLAYLINLAFTK  181 (576)
Q Consensus       115 ~~~~--~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~-----R--~~~~~~~~~~~~~G~~l~~~l~~~l~~  181 (576)
                      -+.+  +.+.+++..++.+++.+...+...++++|..+-.|     |  |...+......=+|..++..+.++...
T Consensus       320 ~f~~~~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~~L~  395 (467)
T COG2211         320 YFTPAGSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGWILG  395 (467)
T ss_pred             HhhcCcchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8876  78888999999999999999999999887764322     2  677777777777788888777776654

>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters

Probab=98.27  E-value=5.2e-06  Score=67.00  Aligned_cols=81  Identities=15%  Similarity=0.128  Sum_probs=75.9

Q ss_pred             hhhhhhhHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHhcchH
Q 008137           41 FGYDTGVISGALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFIGAIIMAIAPQP  120 (576)
Q Consensus        41 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~  120 (576)
                      .++.+..+.|++|.+++|.+.+..+.   |++.+.+++|+.+|++...++.++..+++.+..+++...+..+.+++.+++
T Consensus         4 mGigRFayTplLP~M~~~~~ls~~~a---g~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~~~~   80 (85)
T PF06779_consen    4 MGIGRFAYTPLLPLMQADGGLSLSQA---GWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALTHSF   80 (85)
T ss_pred             hhhHHHHHHhHhHHHHHhcCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhch
Confidence            57889999999999999999999999   999999999999999999999999888999999999999999999999888


Q ss_pred             HHHH
Q 008137          121 WVII  124 (576)
Q Consensus       121 ~~l~  124 (576)
                      +.+.
T Consensus        81 ~~w~   84 (85)
T PF06779_consen   81 WLWS   84 (85)
T ss_pred             HHHh
Confidence            7653

Note that many members are hypothetical proteins.

>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=98.20  E-value=1.6e-05  Score=77.21  Aligned_cols=94  Identities=16%  Similarity=0.280  Sum_probs=70.8

Q ss_pred             HHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Q 008137           52 LLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFIGAIIMAIAPQPWVIILGRIFVG  131 (576)
Q Consensus        52 ~~~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~R~l~G  131 (576)
                      .-.+-+.++.-..+.   |.+.-..+-..++...+.|-++||-|||+.-+.-.+..++++ +.-.+++|-.++++|.+-|
T Consensus        60 vYyLYstYgFgkG~I---gqLfiaGfgSsmLFGtivgSLaDkqGRKracvtycitYiLsC-iTKhSpqYkVLmVGR~LGG  135 (454)
T KOG4332|consen   60 VYYLYSTYGFGKGDI---GQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSC-ITKHSPQYKVLMVGRVLGG  135 (454)
T ss_pred             eeeeehhcCccCCcc---ceeeecccchHHHHHHHHHHHHhhhccccceeeehHHHHHHH-HhhcCCceEEEeehhhhhh
Confidence            333445666666666   777777777778888899999999999997665555554443 3455789999999999999


Q ss_pred             hhhhhhhhhHHHH-HHhcc
Q 008137          132 LGVGMASMTAPLY-ISEAS  149 (576)
Q Consensus       132 ~~~g~~~~~~~~~-i~e~~  149 (576)
                      ++.+..+....++ ++|+-
T Consensus       136 iaTsLLFSaFEsWliaEHn  154 (454)
T KOG4332|consen  136 IATSLLFSAFESWLIAEHN  154 (454)
T ss_pred             HHHHHHHHHHHHHHHHHhh
Confidence            9999888777654 67775

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=98.20  E-value=2.2e-05  Score=83.13  Aligned_cols=146  Identities=20%  Similarity=0.098  Sum_probs=106.8

Q ss_pred             CchhHHHHHHHHHhHHHHHHHHHHHHhhccc-CChHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccccccCCCCCCC
Q 008137          310 ASKSTALALSLVTSGLNALGSIVSMAFVDKY-GRRRLMIVSMFGLSSCLVALAVVFFQAAIHAPTVSQIESSHFGGNNTC  388 (576)
Q Consensus       310 ~~~~~~~~~~~~~~~~~~ig~~~~g~l~dk~-grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  388 (576)
                      .++.++..+...+....-+..+++||++||+ |+|+.+..+.+++.++.+++......                      
T Consensus        58 ~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~~~~~----------------------  115 (498)
T COG3104          58 FDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISSVS----------------------  115 (498)
T ss_pred             cChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccc----------------------
Confidence            3566665555555555667789999999995 99999999999999999988765200                      


Q ss_pred             CcccccCCCCcccccccccccccccCCCCCCCCCCcccccccccccccccccccccccCCCCcchhHHHHHHHHHHHHhc
Q 008137          389 PAYITDGNAKSWNCMDCLKAKCGFCAHKGNEYLPGACLIDEKSTDTLCSDEHRTYFISGCPSSFGWLAVVFLGAYIITYS  468 (576)
Q Consensus       389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~  468 (576)
                                                                                     ......+.+.+...+.+
T Consensus       116 ---------------------------------------------------------------~~~gl~i~L~~I~iG~G  132 (498)
T COG3104         116 ---------------------------------------------------------------GPGGLYIGLALIIVGTG  132 (498)
T ss_pred             ---------------------------------------------------------------cccHHHHHHHHHHhccc
Confidence                                                                           00122333333333333


Q ss_pred             CCcccccchhcccccccc--ccccchhHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHhhc
Q 008137          469 PGMGTAPWIVNSEIYPLR--YRGVGGGIAAVSNWTSNLIVSLTFLTLTEALGSAGTFLLFAGFSLLGLVAIYLLV  541 (576)
Q Consensus       469 ~~~~~~~~~~~~e~~p~~--~rg~~~g~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~  541 (576)
                       .+=+....+..|++|++  .|-.++++..+..++|++++|++.+++.++.||...|.+.++-..++++..++..
T Consensus       133 -l~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~f~~~~  206 (498)
T COG3104         133 -LFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMIIGLVIFLLGR  206 (498)
T ss_pred             -cccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHcc
Confidence             33355567889999754  3666777778888999999999999999999999999998888888888766543

>KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism]

Probab=98.18  E-value=9.6e-05  Score=74.48  Aligned_cols=253  Identities=11%  Similarity=0.063  Sum_probs=157.4

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCc
Q 008137           72 IVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFIGAIIMAIAPQPWVIILGRIFVGLGVGMASMTAPLYISEASPA  151 (576)
Q Consensus        72 i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~  151 (576)
                      +.-+..-.+.+.-.+.=.+.|-.--|+++++-.+......++.-+.++.+.+=+.-++.|...+. ..+-++|+-+..++
T Consensus        47 vyPvwTYSYLv~LvpvFlLTD~lrYKPvivlq~ls~v~~w~~lv~g~sV~~mQvlE~FyG~~tAa-EIAYysYIYs~Vd~  125 (433)
T KOG3810|consen   47 VYPVWTYSYLVGLVPVFLLTDYLRYKPVVVLQALSGVPVWIMLVFGPSVKAMQVLEFFYGPATAA-EIAYYSYIYSKVDP  125 (433)
T ss_pred             cccchhHHHHHHHHHHHHHhhhhhcceeeeeeccchhHHHHHHHhcCCchheeeehhhcChHHHH-HHhhhheeeeecCH
Confidence            34445556667777777899999889999988887888888888999999999999999998774 55678899999999


Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCc-hhHHHHHHhHHHHHHHHHHHhhccCChhHHhhcCCHHHHHHHHHHh
Q 008137          152 KIRGALVSANGFLITGGQFLAYLINLAFTKAPG-TWRWMLGVAGLPAVVQFGLMMMLPESPRWLYRQNKVDEARAILEKI  230 (576)
Q Consensus       152 ~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~-~Wr~~f~v~~~~~~~~~~~~~~l~esp~~l~~~~~~~~~~~~l~~i  230 (576)
                      +++.++.+.-....-.|..+|..++-.+..... +.+..-.+...-..+.....+++|..+|...-+.+.++.  ...+.
T Consensus       126 ~~Yqrvt~y~RaA~L~g~~~g~vlaQlLvs~~~~sy~~LN~ISL~~~~ia~~~A~fLP~v~rSl~f~~~~~~~--~v~~~  203 (433)
T KOG3810|consen  126 EMYKRVTGYCRAAFLVGKFVGSVLAQLLVSLETLSYTTLNYISLAEVTIAVLLALFLPRVKRSLYFHRLEDKI--SVGDL  203 (433)
T ss_pred             HHHHHHHHHhHHHHHHHhHHHhHHHHHHhhhcccchhhhchhhHHHHHHHHHHHhhCCCCchhhhhhcccccc--eeccc
Confidence            999999999999988898888888888765432 133333333333334445556677665443332222210  00000


Q ss_pred             CCchhhhHHHHHHHHHHHhhhhhhcccchhhHHHhhhhcccchhhhhhHHHHHHHHHHHHHhhHHHHhhhHHHHHhhc-C
Q 008137          231 YPADQVEEEVNLLKQSVENEKAEEGLIGKDMISRLKGAFGNKIVRRGLYAGVTVQVAQQFVGINTVMYYSPTIVQFAG-F  309 (576)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  309 (576)
                      ...+......+..+           ......+++++...+++...+.-++..+.     ..+++.+.+|...+.++.. .
T Consensus       204 e~~~~~~~~~~~l~-----------~~~~~l~~~l~~~y~np~ll~WSlWwAl~-----scg~~QV~nY~Q~LW~~~~~~  267 (433)
T KOG3810|consen  204 EEMNPQASYMSYLR-----------GAFVLLWRDLQECYSNPRLLKWSLWWALA-----SCGYYQVTNYTQILWKEVAPN  267 (433)
T ss_pred             hhcCccchhhHHHH-----------HHHHHHHHHHHHHhcCchhhhhHHHHHHh-----hchhHHHHHHHHHHHHhhCCC
Confidence            00000000000000           11122335667777777766544443333     3345666666666666553 1


Q ss_pred             CchhHHHHHHHHHhHHHHHHHHHHHHhhcccCCh
Q 008137          310 ASKSTALALSLVTSGLNALGSIVSMAFVDKYGRR  343 (576)
Q Consensus       310 ~~~~~~~~~~~~~~~~~~ig~~~~g~l~dk~grr  343 (576)
                      .....-|..-.+..+.++++.+..|.+.-...|.
T Consensus       268 ~~~vyNG~veAv~tlLGa~~~~~~g~l~i~w~r~  301 (433)
T KOG3810|consen  268 PANVYNGAVEAVSTLLGAIAALAAGYLNINWNRW  301 (433)
T ss_pred             chhhhcCHHHHHHHHHHHHHHHHHHheeeccchh
Confidence            1222234455566667788889999987666665

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=98.18  E-value=4.6e-05  Score=78.67  Aligned_cols=162  Identities=12%  Similarity=0.016  Sum_probs=127.0

Q ss_pred             HHHHHHHhhhhhhhhHHHHHHHHHHh-hccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHH
Q 008137           33 SAGIGGLLFGYDTGVISGALLYIKED-FRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFIGA  111 (576)
Q Consensus        33 ~~~l~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~  111 (576)
                      .-.++.|+.--.....+..++.+.++ .+.++.+.   ....+.+..+.++|.+++-++..|+-..+.+.+..++..+-+
T Consensus       240 ~gvl~~FlYVG~Eva~gsfl~~y~~~~~g~~~~~a---a~~~s~~~~~~~vGRFig~~lm~~~~~~k~Laf~a~~~ill~  316 (422)
T COG0738         240 LGVLAIFLYVGAEVAIGSFLVSYLEELLGLNEQQA---AYYLSFFWVGFMVGRFIGSALMSRIKPEKYLAFYALIAILLL  316 (422)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHhcCCccHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHH
Confidence            33455566666667777788888877 55666666   899999999999999999999999999999999988888888


Q ss_pred             HHHHhcchHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHH
Q 008137          112 IIMAIAPQPWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFTKAPGTWRWMLG  191 (576)
Q Consensus       112 ~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~Wr~~f~  191 (576)
                      +..+++++...+ ..-++.|+..+..+|+..+...+..|  +.....|..-....+|+.+-|.+.|++.+..+ -...+.
T Consensus       317 ~~~~l~~g~v~~-~~l~~ig~F~simfPTIfslal~~l~--~~ts~~s~~l~maivGGAiiP~l~G~i~d~~g-~~~~~~  392 (422)
T COG0738         317 LAVALIGGVVAL-YALFLIGLFNSIMFPTIFSLALKNLG--EHTSVGSGLLVMAIVGGAIIPPLQGVIADMFG-IQLTFL  392 (422)
T ss_pred             HHHHHhcChHHH-HHHHHHHHHhHHHHHHHHHHHHhccC--ccccccceeeeeheecchHHHHHHHHHHHhhh-hHHHHH
Confidence            888888885544 45678899999999999999999998  33445566666677888899999999999877 566666


Q ss_pred             HhHHHHHHHH
Q 008137          192 VAGLPAVVQF  201 (576)
Q Consensus       192 v~~~~~~~~~  201 (576)
                      ....++.+.+
T Consensus       393 ~~pllc~lyV  402 (422)
T COG0738         393 IVPLLCYLYV  402 (422)
T ss_pred             HHHHHHHHHH
Confidence            4444454444

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=98.16  E-value=8.7e-05  Score=67.72  Aligned_cols=109  Identities=12%  Similarity=0.164  Sum_probs=92.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhhhhhhhhhHHHHHHhccC
Q 008137           71 LIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFIGAIIMAIAPQPWVIILGRIFVGLGVGMASMTAPLYISEASP  150 (576)
Q Consensus        71 ~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~  150 (576)
                      .-.++......+++++.+.+.+++|.|+.++++.+.+.+-.... +-++.+.++.+-.+.|++.+..|.....++.+..+
T Consensus        41 ~slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~-~~~~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~  119 (156)
T PF05978_consen   41 YSLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASF-FYPNSYTLYPASALLGFGAALLWTAQGTYLTSYST  119 (156)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHhhhhHHhhHhhhHHHHHcCC
Confidence            45566677778888889999999999999999999887554433 45788899999999999999999999999999999


Q ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 008137          151 AKIRGALVSANGFLITGGQFLAYLINLAFT  180 (576)
Q Consensus       151 ~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~  180 (576)
                      +++|++-.+++......+.++|.++.-.+.
T Consensus       120 ~~~~~~~~~ifw~i~~~s~i~G~~~~~~~~  149 (156)
T PF05978_consen  120 EETIGRNTGIFWAIFQSSLIFGNLFLFFIF  149 (156)
T ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999988888888888877765543

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=98.15  E-value=4.9e-06  Score=86.70  Aligned_cols=180  Identities=17%  Similarity=0.061  Sum_probs=134.3

Q ss_pred             HHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhccchhhhHH-----HHHHHHH-HHHHHHHHHHHHHHhhhccCchHHHHH
Q 008137           29 KLALSAGIGGLLFGYDTGVISGALLYIKEDFRDVEKKTWL-----QELIVSM-AVAGAIFGAGFGGWINDRFGRKISLLG  102 (576)
Q Consensus        29 ~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-----~g~i~s~-~~~~~~i~~~~~G~l~dr~Grr~~~~~  102 (576)
                      +.++..+...|+.-+.....+.....|.+.++..+.+...     ......+ ...++..|..+...+.|++|||++.+.
T Consensus       304 ~~Llgt~~~WFllDiafy~~nL~~s~I~~~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk~iq~~  383 (538)
T KOG0252|consen  304 KHLLGTAGTWFLLDIAFYGQNLFQSVIFSAIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRKYIQLM  383 (538)
T ss_pred             HHHHHHHHHHHhhhhhhhccccHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehhhhHHHHHh
Confidence            6677778888888888888888888888887755444311     1111111 222333356667789999999999999


Q ss_pred             HHHHHHHHHHHHHhcch--------HHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHH
Q 008137          103 ADVLFFIGAIIMAIAPQ--------PWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYL  174 (576)
Q Consensus       103 ~~~~~~i~~~~~~~~~~--------~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~  174 (576)
                      +.+++++..+..+...+        .....+..++.-+|-+.   ....+-+|.+|.+-|+..-|+.....-.|.++|..
T Consensus       384 GF~~~~i~~~~~~~~y~~~~~~~Gf~v~y~l~~ff~NFGPn~---ttfivpaE~FParvR~t~hGIsAA~GK~GAivg~~  460 (538)
T KOG0252|consen  384 GFFIMTIFFFVIAGPYNQLENTIGFVVLYSLTFFFGNFGPNA---TTFIVPAEIFPARVRSTCHGISAASGKAGAIVGAF  460 (538)
T ss_pred             hHHHHHHHHHHHcCCcccccccCceeehHHHHHHHHhcCCCc---eeEEeehhhchHHHhhhhhhHHHHhccchHHHHHH
Confidence            99999999999998876        12233334444444332   33455689999999999999999999999999999


Q ss_pred             HHHHhcC-----CCchhHHHHHHhHHHHHHHHHHHhhccCChh
Q 008137          175 INLAFTK-----APGTWRWMLGVAGLPAVVQFGLMMMLPESPR  212 (576)
Q Consensus       175 l~~~l~~-----~~~~Wr~~f~v~~~~~~~~~~~~~~l~esp~  212 (576)
                      .-.++.+     ..+ -|+.|++.+...++..+..+++||+.+
T Consensus       461 ~F~~~t~~~yp~~~g-~~~v~~i~~~~~~~gi~~T~l~pEtk~  502 (538)
T KOG0252|consen  461 GFLYLTDHNYPPNIG-VRNVFIILAGCMLLGILFTLLIPETKG  502 (538)
T ss_pred             HhhHhhhccCCcccc-chHHHHHHHHHHHHhHheeEEeecccc
Confidence            8888887     555 899999999999988888888998854

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.14  E-value=2e-05  Score=85.42  Aligned_cols=90  Identities=16%  Similarity=0.173  Sum_probs=73.2

Q ss_pred             HHHHHHHHHHhcCCcccccchhccccccccccccchhHHHHHHHHHHHHHHHHHHHHHH------hhccchhhHHHHHHH
Q 008137          457 VVFLGAYIITYSPGMGTAPWIVNSEIYPLRYRGVGGGIAAVSNWTSNLIVSLTFLTLTE------ALGSAGTFLLFAGFS  530 (576)
Q Consensus       457 ~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~g~~~~~~~~~~l~~------~~g~~~~~~~~~~~~  530 (576)
                      ++++=++.+.+..+..|....+...-|.++.||..+|+.+....+|+++++++...+.+      ..||++.|++.++++
T Consensus       137 ~ialr~llGl~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~  216 (495)
T KOG2533|consen  137 LIALRFLLGLFESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVIT  216 (495)
T ss_pred             HHHHHHHHHHHhcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHH
Confidence            44444455555556667777888999999999999999999999999999999888643      468999999999999


Q ss_pred             HHHHHHHHhhccCCCC
Q 008137          531 LLGLVAIYLLVPETKG  546 (576)
Q Consensus       531 ~i~~~~~~~~~~~~~~  546 (576)
                      ++..+++++++|+...
T Consensus       217 ~~~gi~~f~~lp~~P~  232 (495)
T KOG2533|consen  217 LVLGIVVFFFLPDNPS  232 (495)
T ss_pred             HHHHheEEEEecCChh
Confidence            9999888888886544

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=98.09  E-value=7.5e-08  Score=103.97  Aligned_cols=145  Identities=20%  Similarity=0.111  Sum_probs=100.9

Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccccccCCCCCCCCcccc
Q 008137          314 TALALSLVTSGLNALGSIVSMAFVDKYGRRRLMIVSMFGLSSCLVALAVVFFQAAIHAPTVSQIESSHFGGNNTCPAYIT  393 (576)
Q Consensus       314 ~~~~~~~~~~~~~~ig~~~~g~l~dk~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  393 (576)
                      ..........++.++|++++|+++||+|||+.+..+.++..++.++..+.....                          
T Consensus        47 ~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~~~i~~~~~~~~~~~~--------------------------  100 (451)
T PF00083_consen   47 LSSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISALLMIIGSILIAFAPSYN--------------------------  100 (451)
T ss_pred             HHHHHHHHHHhhhccccccccccccccccccccccccccccccccccccccccc--------------------------
Confidence            456677788889999999999999999999999999988888887766653110                          


Q ss_pred             cCCCCcccccccccccccccCCCCCCCCCCcccccccccccccccccccccccCCCCcchhHHHHHHHHHHHHhcCCccc
Q 008137          394 DGNAKSWNCMDCLKAKCGFCAHKGNEYLPGACLIDEKSTDTLCSDEHRTYFISGCPSSFGWLAVVFLGAYIITYSPGMGT  473 (576)
Q Consensus       394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~  473 (576)
                                                                                ..+...+.-++.+++.+ +..+
T Consensus       101 ----------------------------------------------------------~~~~~~~~R~~~G~~~g-~~~~  121 (451)
T PF00083_consen  101 ----------------------------------------------------------NFWMLLIGRFLIGFGIG-GAYV  121 (451)
T ss_pred             ----------------------------------------------------------ccccccccccccccccc-cccc
Confidence                                                                      01222333333333333 2344


Q ss_pred             ccchhccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHh---hccchhhHHHHHHHHHHHHHHHhhccCC
Q 008137          474 APWIVNSEIYPLRYRGVGGGIAAVSNWTSNLIVSLTFLTLTEA---LGSAGTFLLFAGFSLLGLVAIYLLVPET  544 (576)
Q Consensus       474 ~~~~~~~e~~p~~~rg~~~g~~~~~~~~g~~~~~~~~~~l~~~---~g~~~~~~~~~~~~~i~~~~~~~~~~~~  544 (576)
                      ....+..|..|++.||...++.+....+|..++..+...+.+.   .+|+..+.+.++.+++..+.. .++||+
T Consensus       122 ~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~l~~~~~~-~~~pES  194 (451)
T PF00083_consen  122 VSPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILLIFGAIPSLLVLLLR-FFLPES  194 (451)
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccc
Confidence            5668889999999999999999988888877776655433332   347777777766666554443 567876

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=98.08  E-value=6e-05  Score=74.33  Aligned_cols=140  Identities=19%  Similarity=0.136  Sum_probs=97.0

Q ss_pred             hhHHHHhhhHHHHHhhcCCchhHHHHHHHHHhHHHHHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 008137          292 GINTVMYYSPTIVQFAGFASKSTALALSLVTSGLNALGSIVSMAFVDKYGRRRLMIVSMFGLSSCLVALAVVFFQAAIHA  371 (576)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dk~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~  371 (576)
                      ..+.+..|.|.+-+..+. +..+...+.....++..+| ++.|.+.|++|.+.++.++.....+++.++........ . 
T Consensus        17 t~Y~Fs~yS~~Lk~~l~~-sq~~l~~l~~~~~~G~~~G-~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~i-~-   92 (250)
T PF06813_consen   17 TTYTFSAYSPQLKSRLGY-SQSQLNTLSTAGDIGSYFG-ILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGRI-P-   92 (250)
T ss_pred             cccchhhhhHHHHHHhCC-CHHHHHHHHHHHHHHhhcc-HHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCcc-C-
Confidence            456677788888777766 7788888888888877664 88899999999999999999999999887766543110 0 


Q ss_pred             CCccccccccCCCCCCCCcccccCCCCcccccccccccccccCCCCCCCCCCcccccccccccccccccccccccCCCCc
Q 008137          372 PTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAHKGNEYLPGACLIDEKSTDTLCSDEHRTYFISGCPSS  451 (576)
Q Consensus       372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~  451 (576)
                                                                                                    . 
T Consensus        93 ------------------------------------------------------------------------------~-   93 (250)
T PF06813_consen   93 ------------------------------------------------------------------------------S-   93 (250)
T ss_pred             ------------------------------------------------------------------------------c-
Confidence                                                                                          0 


Q ss_pred             chhHHHHHHHHHHHHhcCCc-ccccchhccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHh
Q 008137          452 FGWLAVVFLGAYIITYSPGM-GTAPWIVNSEIYPLRYRGVGGGIAAVSNWTSNLIVSLTFLTLTEA  516 (576)
Q Consensus       452 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~g~~~~~~~~~~l~~~  516 (576)
                      .+.+ ..++..+..+.+.++ .+.......+.|| +.||++.|+.-....+++.+...+...+.+.
T Consensus        94 ~~~~-~~~~~~~l~~~s~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t~i~~~~f~~  157 (250)
T PF06813_consen   94 LPVW-LMCLFLFLGGNSSCWFNTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFTQIYSAFFGD  157 (250)
T ss_pred             cchH-HHHHHHHHHcccHHHhhhHHHHHHHHhCc-cccCceehhhhHHHHhHHHHHHHHHHHHcCC
Confidence            0112 222332333333222 2333344557887 5799999999999999998888877766655

>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions

Probab=97.99  E-value=0.019  Score=62.45  Aligned_cols=156  Identities=12%  Similarity=0.049  Sum_probs=98.3

Q ss_pred             hchhhHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhccchhhhHHHHHHHHHHHH-HHHHHHHHHHHhhhccCchHHH
Q 008137           22 WTTPYIMKLALSAGIGGLLFGYDTGVISGALLYIKEDFRDVEKKTWLQELIVSMAVA-GAIFGAGFGGWINDRFGRKISL  100 (576)
Q Consensus        22 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~i~s~~~~-~~~i~~~~~G~l~dr~Grr~~~  100 (576)
                      +..+..++.+..+++..|+..+..+.    +-++.+.+=.+......+..+-....+ +..+...+..+++++++|.+++
T Consensus        17 pi~~~E~~k~~~l~~m~f~i~f~y~~----lR~~KD~lvvt~~gae~I~flK~~~vlP~a~~f~~~y~kl~n~~s~~~lF   92 (491)
T PF03219_consen   17 PIHRSELKKFLPLALMFFFILFNYTI----LRDLKDTLVVTAQGAEVIPFLKVWGVLPVAILFTILYSKLSNRLSREKLF   92 (491)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHH----HHHhcCeEEEecCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHH
Confidence            33556677777777777766666543    233333332222222222555554444 4455577899999999999988


Q ss_pred             HHHHHHHHHHHHHHHhc---------ch----------------------HHHHHHHHHHHHhhhhhhhh-hHHHHHHhc
Q 008137          101 LGADVLFFIGAIIMAIA---------PQ----------------------PWVIILGRIFVGLGVGMASM-TAPLYISEA  148 (576)
Q Consensus       101 ~~~~~~~~i~~~~~~~~---------~~----------------------~~~l~~~R~l~G~~~g~~~~-~~~~~i~e~  148 (576)
                      -+.+..+.....+.++.         ++                      .|.+.+.-...-+-.....+ .-..+..|.
T Consensus        93 y~~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~~~i~~~~~Wt~slfYv~aElwgsvvlSlLFW~fAN~i  172 (491)
T PF03219_consen   93 YIIIIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFKGFIAMFRNWTFSLFYVMAELWGSVVLSLLFWGFANEI  172 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            87776666655555552         11                      12222333333332222222 346778999


Q ss_pred             cCcchhhHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 008137          149 SPAKIRGALVSANGFLITGGQFLAYLINLAFTK  181 (576)
Q Consensus       149 ~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~  181 (576)
                      ++.+|-.|..++++.+.++|.+++..+...+.+
T Consensus       173 tt~~eAKRfYpl~g~ganigli~sG~~~~~~~~  205 (491)
T PF03219_consen  173 TTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSS  205 (491)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999988888877

One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane

>COG3202 ATP/ADP translocase [Energy production and conversion]

Probab=97.92  E-value=0.048  Score=58.17  Aligned_cols=180  Identities=12%  Similarity=0.033  Sum_probs=118.4

Q ss_pred             chhhHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhccchhhhHHHHHHHHHHHH-HHHHHHHHHHHhhhccCchHHHH
Q 008137           23 TTPYIMKLALSAGIGGLLFGYDTGVISGALLYIKEDFRDVEKKTWLQELIVSMAVA-GAIFGAGFGGWINDRFGRKISLL  101 (576)
Q Consensus        23 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~i~s~~~~-~~~i~~~~~G~l~dr~Grr~~~~  101 (576)
                      .+++.++.++.+++.+++..+..+.    +-.+.+.+-.+........++-+...+ +..+..++.+++.+++-|.+++-
T Consensus        21 i~r~E~~kflpl~Ll~f~I~~ny~~----lR~lKDslvv~~~gae~I~FlK~~~vlP~avif~~iy~kl~~~lt~~~vF~   96 (509)
T COG3202          21 IRRYELKKFLPLALLFFCILFNYNL----LRSLKDSLVVTRQGAESISFLKTWGVLPSAVIFTIIYQKLLNILTREKVFY   96 (509)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHH----HHHhhhheEeecCcchhhHHHHHHHhchHHHHHHHHHHHHHhhcCHHHHHH
Confidence            4455666666666666666555443    455666666554444334778888888 77888999999999999999988


Q ss_pred             HHHHHHHHHHHHHHhc---------ch-----------------------HHHHHHHHHHHHhhhhhhhh-hHHHHHHhc
Q 008137          102 GADVLFFIGAIIMAIA---------PQ-----------------------PWVIILGRIFVGLGVGMASM-TAPLYISEA  148 (576)
Q Consensus       102 ~~~~~~~i~~~~~~~~---------~~-----------------------~~~l~~~R~l~G~~~g~~~~-~~~~~i~e~  148 (576)
                      +-+..+....+++++.         ++                       .|...+.-...=+-...... .-.....|.
T Consensus        97 ~~~~~F~~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~~l~~~ili~~~Ws~s~~Yi~aELWgslV~S~lFw~faNei  176 (509)
T COG3202          97 IILGFFLGFFALFAFVIYPYKDILHPDPEFSRDLFADLPMFLKWFILIVGEWSYSLFYIMAELWGSLVLSLLFWQFANEI  176 (509)
T ss_pred             HHHHHHHHHHHHHHHHHhccccccCCCHHHHHHHHhhCCccceeeeEeecchHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            8887777777777662         01                       13333333333332222222 335567888


Q ss_pred             cCcchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCch---------hHHHHHHhHHHHHHHHHHHhh
Q 008137          149 SPAKIRGALVSANGFLITGGQFLAYLINLAFTKAPGT---------WRWMLGVAGLPAVVQFGLMMM  206 (576)
Q Consensus       149 ~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~---------Wr~~f~v~~~~~~~~~~~~~~  206 (576)
                      +..+|-.|..++++.+.+++.+++..+..++....+.         -+..+.+.++.+++...+..+
T Consensus       177 tt~~eakRFy~lf~l~~ni~lllsg~~~~~~~k~~~~~~~~~~~~~~~~~~~vi~~~~~i~~~l~~~  243 (509)
T COG3202         177 TTIEEAKRFYPLFGLGANISLLLSGEVTSWLSKHRDALASEFKDLLLQILFIVIVILGIIAILLYRY  243 (509)
T ss_pred             hhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8888889999999999999999999999888764332         334455555555555555443

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=97.91  E-value=0.00014  Score=78.26  Aligned_cols=78  Identities=21%  Similarity=0.146  Sum_probs=70.2

Q ss_pred             cccchhccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHhhccCCCCCCHH
Q 008137          473 TAPWIVNSEIYPLRYRGVGGGIAAVSNWTSNLIVSLTFLTLTEALGSAGTFLLFAGFSLLGLVAIYLLVPETKGLAFE  550 (576)
Q Consensus       473 ~~~~~~~~e~~p~~~rg~~~g~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  550 (576)
                      ....++.+|....+.|....|+.+...+.+..++|.+.+.+.+..|...+|.+..+..++..+...+++||+..++.+
T Consensus       131 s~~~a~vadis~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~~  208 (463)
T KOG2816|consen  131 SVGFAYVADISSEEERSSSIGLLSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPESLQEKER  208 (463)
T ss_pred             hhhhhheeeccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhccccccCcccc
Confidence            355678899999999999999999999999999999999999999999999999999999999999999998766554

>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]

Probab=97.90  E-value=0.00075  Score=71.63  Aligned_cols=143  Identities=15%  Similarity=0.112  Sum_probs=79.2

Q ss_pred             HHHHHHHhhhhhhhhHHHHHHHHHHh--hccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhh-----ccCchHHHHH---
Q 008137           33 SAGIGGLLFGYDTGVISGALLYIKED--FRDVEKKTWLQELIVSMAVAGAIFGAGFGGWIND-----RFGRKISLLG---  102 (576)
Q Consensus        33 ~~~l~~~~~~~~~~~~~~~~~~i~~~--~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~d-----r~Grr~~~~~---  102 (576)
                      ++.+-+++++...+.....+|.+.++  -+.+.++.   +. .|.....+.+ -++|.++.|     |+||||.-++   
T Consensus         4 lL~~LY~lQGiP~GL~~gsiPflL~~~~~~~sy~q~---~~-fSla~~PfSl-KlLWaPiVDs~y~~~~GRRKSWiiP~Q   78 (544)
T PF13000_consen    4 LLVLLYFLQGIPLGLAFGSIPFLLQSMAKKVSYSQQ---AI-FSLASYPFSL-KLLWAPIVDSVYSKRIGRRKSWIIPIQ   78 (544)
T ss_pred             HHHHHHHHcCcccccccccchhhhccccCCCChhHh---ee-eeeeechhHH-HHhhhhhhhhhcccccCCcchhhhHHH
Confidence            44566788888888776778998888  56776665   32 1221222221 355666666     8999987554   


Q ss_pred             ---HHHHHHHHHHH----------HHhc-------chH--HHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHH
Q 008137          103 ---ADVLFFIGAII----------MAIA-------PQP--WVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSA  160 (576)
Q Consensus       103 ---~~~~~~i~~~~----------~~~~-------~~~--~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~  160 (576)
                         |+.+..++.-.          -...       ++.  ..+...-++.=+-.+---.+.-.+.-....+++++.|...
T Consensus        79 ~l~g~~m~~l~~~i~~~~~~~~~~d~~~~~~~~~~~~~~i~~Lt~~F~~L~fl~ATQDIAVDGWALT~Ls~~n~~~ASTc  158 (544)
T PF13000_consen   79 YLSGILMLYLSYNISQWLLFDGVDDALLGQGESTVNNITIKFLTWFFFILVFLCATQDIAVDGWALTMLSPENVGYASTC  158 (544)
T ss_pred             HHHHHHHHHHHhccchhhcccccchhhhcCCCCcccccchhHHHHHHHHHHHHHccCCceeehhhhhhcChhhcchHHHH
Confidence               33333333222          0000       001  1122222122221221122223333445578889999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhc
Q 008137          161 NGFLITGGQFLAYLINLAFT  180 (576)
Q Consensus       161 ~~~~~~~G~~l~~~l~~~l~  180 (576)
                      ...+.+.|.+++..+-..+-
T Consensus       159 qtvG~~~Gyfls~tvFlaln  178 (544)
T PF13000_consen  159 QTVGQTAGYFLSFTVFLALN  178 (544)
T ss_pred             HHhHhhhhHHHHHHHHHhhC
Confidence            99999999999888776654

This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=97.82  E-value=0.00011  Score=78.67  Aligned_cols=162  Identities=11%  Similarity=-0.007  Sum_probs=110.6

Q ss_pred             HHHHh--hcCCchhHHHHHHHHHhHHHHHHHHHHHHhhcccCC-hHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccc
Q 008137          302 TIVQF--AGFASKSTALALSLVTSGLNALGSIVSMAFVDKYGR-RRLMIVSMFGLSSCLVALAVVFFQAAIHAPTVSQIE  378 (576)
Q Consensus       302 ~~~~~--~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dk~gr-r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  378 (576)
                      .|+++  .+. +....|+......++.+++++++|+...|.+. |+.++.++++++++.++........           
T Consensus        59 pYl~~lD~~A-~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~ii~~~g~llY~~l~~~~-----------  126 (488)
T KOG2325|consen   59 PYLQKLDPTA-TATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSFLIAIIGNLLYLALAYVP-----------  126 (488)
T ss_pred             hhhhhcCCCC-CcchhhHHHHHHHHHHHhcchhhcccccccCCcccCHHHHHHHHHHHHHHHHHHHhcc-----------
Confidence            34554  333 55667888888999999999999999999886 7888899999999988875443311           


Q ss_pred             cccCCCCCCCCcccccCCCCcccccccccccccccCCCCCCCCCCcccccccccccccccccccccccCCCCcchhHHHH
Q 008137          379 SSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAHKGNEYLPGACLIDEKSTDTLCSDEHRTYFISGCPSSFGWLAVV  458 (576)
Q Consensus       379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~  458 (576)
                                                                                             .+  +..+.
T Consensus       127 -----------------------------------------------------------------------~~--~~y~m  133 (488)
T KOG2325|consen  127 -----------------------------------------------------------------------NG--VKYLM  133 (488)
T ss_pred             -----------------------------------------------------------------------cc--hHHHH
Confidence                                                                                   11  23344


Q ss_pred             HHHHHHHHhcCCcccccchhccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHh------------h-ccchhhHH
Q 008137          459 FLGAYIITYSPGMGTAPWIVNSEIYPLRYRGVGGGIAAVSNWTSNLIVSLTFLTLTEA------------L-GSAGTFLL  525 (576)
Q Consensus       459 ~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~g~~~~~~~~~~l~~~------------~-g~~~~~~~  525 (576)
                      .++-+..+.+.+.....-.|+++..-.+.|.++++..+....+|.++||.+...+..-            + -+..+-++
T Consensus       134 L~~R~l~Gvg~~n~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~  213 (488)
T KOG2325|consen  134 LVARILTGVGVGNFAVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFTPLGEKGFMILPGLIFNMYTAPAWL  213 (488)
T ss_pred             HHHHHHcCcCcccHHHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHhhhcCCceEEcCcceEEecchHHHH
Confidence            4444445555455556667888866677788888888777777777777665443221            0 12346778


Q ss_pred             HHHHHHHHHHHHHhhccCCCCCC
Q 008137          526 FAGFSLLGLVAIYLLVPETKGLA  548 (576)
Q Consensus       526 ~~~~~~i~~~~~~~~~~~~~~~~  548 (576)
                      ++++.++.+++.+++.+|.+...
T Consensus       214 m~i~~i~~~v~i~~~f~E~~~~~  236 (488)
T KOG2325|consen  214 MAILWIIYIVIILFFFKEVYRGI  236 (488)
T ss_pred             HHHHHHHHHHHHHhheeecccCc
Confidence            88888888888888777765433

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=97.79  E-value=0.0015  Score=68.88  Aligned_cols=108  Identities=11%  Similarity=0.280  Sum_probs=88.6

Q ss_pred             HHHHHHHHHHHHHHHHHHhc--c-h------HHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcc---hhhHHHHHHHHHH
Q 008137           98 ISLLGADVLFFIGAIIMAIA--P-Q------PWVIILGRIFVGLGVGMASMTAPLYISEASPAK---IRGALVSANGFLI  165 (576)
Q Consensus        98 ~~~~~~~~~~~i~~~~~~~~--~-~------~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~---~R~~~~~~~~~~~  165 (576)
                      ++++++.++..+|.++..++  + +      .+.++++-++.++|.|+.=|...++.+|.++++   +|...+.++..+.
T Consensus         2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~i   81 (372)
T PF00854_consen    2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGI   81 (372)
T ss_dssp             HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHH
T ss_pred             HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHH
Confidence            56788888888888884443  2 2      367889999999999999999999999999765   4677888999999


Q ss_pred             HHHHHHHHHHHHHhcCCCchhHHHHHHhHHHHHHHHHHHhh
Q 008137          166 TGGQFLAYLINLAFTKAPGTWRWMLGVAGLPAVVQFGLMMM  206 (576)
Q Consensus       166 ~~G~~l~~~l~~~l~~~~~~Wr~~f~v~~~~~~~~~~~~~~  206 (576)
                      ++|.++++.+.+++.+..+ |.+.|.+.++..++.++.++.
T Consensus        82 n~G~~~~~~~~~~i~~~~~-~~~~f~i~~~~~~~~~~~f~~  121 (372)
T PF00854_consen   82 NIGSLFSPTLVPYIQQNYG-WFLGFGIPAIGMLLALIVFLS  121 (372)
T ss_dssp             HHHHHHHHHCCCHHHHCS--HHHHHHHHHHHHHHHHHHHHC
T ss_pred             hhhhHhhcccchhhccccc-hhhhhhHHHHHHHHHHHHHHh
Confidence            9999999999999988877 999999998887777666544

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=97.72  E-value=0.00088  Score=68.68  Aligned_cols=65  Identities=17%  Similarity=0.146  Sum_probs=49.3

Q ss_pred             HHHHhhhHHHHHhhcCCchhHHHHHHHHHhHHHHHHHHHHHHhhcccCChHHHHHHHHHHHHHHHH
Q 008137          294 NTVMYYSPTIVQFAGFASKSTALALSLVTSGLNALGSIVSMAFVDKYGRRRLMIVSMFGLSSCLVA  359 (576)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dk~grr~~~~~~~~~~~~~~~~  359 (576)
                      +....|.-...+++++ +..+...+.....+.+++...+.|.++||+|||+..+..+++..++++.
T Consensus        51 WLQGpY~Y~LY~~yg~-~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl~  115 (354)
T PF05631_consen   51 WLQGPYLYALYESYGF-SEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCLT  115 (354)
T ss_pred             HhhcchhHHHHHHcCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHH
Confidence            3333333344566677 6667777777778888888999999999999999988888888888764

>PF12832 MFS_1_like: MFS_1 like family

Probab=97.69  E-value=0.00022  Score=56.95  Aligned_cols=69  Identities=10%  Similarity=0.170  Sum_probs=58.9

Q ss_pred             HHHHhhhhhhhhHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHH
Q 008137           36 IGGLLFGYDTGVISGALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLF  107 (576)
Q Consensus        36 l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~  107 (576)
                      ...++.....+.+.|.+|...++.|.+..+.   |++.++..+...++++++|+++||+|+++.++....++
T Consensus         7 ~~yf~~f~~~g~~~Pfl~~~~~~~Gl~~~~i---Gil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~~   75 (77)
T PF12832_consen    7 AFYFFYFAALGCLYPFLPLYLKQLGLSPSQI---GILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLFM   75 (77)
T ss_pred             HHHHHHHHHHHHHHhhhhHhhhhcCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHHH
Confidence            4445566667778888888889999999998   99999999999999999999999999988877766554

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=97.62  E-value=0.014  Score=62.85  Aligned_cols=90  Identities=11%  Similarity=-0.023  Sum_probs=51.1

Q ss_pred             hHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHH----hcCCC-c--hhHHHHH
Q 008137          119 QPWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLA----FTKAP-G--TWRWMLG  191 (576)
Q Consensus       119 ~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~----l~~~~-~--~Wr~~f~  191 (576)
                      .++..++.-++.|++.+........+.+ .+|++.    +..+..+.+++++++.++.-.    ..+.. .  +=...|.
T Consensus       105 ~f~~~~~~v~~~g~~~~~~q~s~~gla~-~fp~~~----~~a~~~G~g~aGv~~s~~~ii~~a~~~~~~~~~~~a~~YF~  179 (437)
T TIGR00939       105 FFVTTMASVVIINSGMALLQGSLFGLAG-VFPSTY----SSAVMSGQGLAGVLTSLAMILVKASGNDSHGLKKSALGYFG  179 (437)
T ss_pred             HHHHHHHHHHHHHhhhhhhcccchhhcc-cCCHHH----HHHHHhcchhHHHHHHHHHHHHHHhcCCccchhhhhhhHHH
Confidence            4667777788899998888877777665 566543    344444555555444333222    11210 1  1123344


Q ss_pred             HhHHHHHHHHHHHhhccCChhH
Q 008137          192 VAGLPAVVQFGLMMMLPESPRW  213 (576)
Q Consensus       192 v~~~~~~~~~~~~~~l~esp~~  213 (576)
                      +..++.++.++++..+++.|..
T Consensus       180 ~a~~v~l~~i~~~~~l~k~~~~  201 (437)
T TIGR00939       180 TPCVVQLICIVCYLLLPKLPFA  201 (437)
T ss_pred             HHHHHHHHHHHHHHHHhcCHHH
Confidence            5555566666666677777643

>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]

Probab=97.62  E-value=0.0081  Score=66.57  Aligned_cols=155  Identities=14%  Similarity=0.212  Sum_probs=120.4

Q ss_pred             hHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhcc-CchHHHHHHHHHHHHHHHHHHhcch------
Q 008137           47 VISGALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRF-GRKISLLGADVLFFIGAIIMAIAPQ------  119 (576)
Q Consensus        47 ~~~~~~~~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~-Grr~~~~~~~~~~~i~~~~~~~~~~------  119 (576)
                      ....++.++.++++.+....   .-..+.+.-......+.+++++|-| ||-+++.++.++..++.++..++..      
T Consensus        56 ~~~nlv~ylt~~~~~~~~~a---a~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p  132 (571)
T KOG1237|consen   56 LVSNLVTYLTLELHASGGGA---ANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLP  132 (571)
T ss_pred             chhHHHHHHHHHhccchHHH---HHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Confidence            34667778888888777655   6677777777788889999999986 8999999998888887654443211      


Q ss_pred             -------------------HHHHHHHHHHHHhhhhhhhhhHHHHHHhccC---cchh---hHHHHHHHHHHHHHHHHHHH
Q 008137          120 -------------------PWVIILGRIFVGLGVGMASMTAPLYISEASP---AKIR---GALVSANGFLITGGQFLAYL  174 (576)
Q Consensus       120 -------------------~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~---~~~R---~~~~~~~~~~~~~G~~l~~~  174 (576)
                                         ...+..+.-+..+|.|+.-+...++-+|-++   ++++   ...+.++....++|.+++..
T Consensus       133 ~~~~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t  212 (571)
T KOG1237|consen  133 FMCKFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQT  212 (571)
T ss_pred             ccccCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHH
Confidence                               2356677788888999999999999999998   3322   36788899999999999999


Q ss_pred             HHHHhcCCCchhHHHHHHhHHHHHHHHHHHh
Q 008137          175 INLAFTKAPGTWRWMLGVAGLPAVVQFGLMM  205 (576)
Q Consensus       175 l~~~l~~~~~~Wr~~f~v~~~~~~~~~~~~~  205 (576)
                      +..+.-+..+ |.+-|.+..+..++.+++++
T Consensus       213 ~~vyiq~~~~-w~lgf~i~~~~~~lai~iF~  242 (571)
T KOG1237|consen  213 VLVYIQDNVG-WKLGFGIPTVLNALAILIFL  242 (571)
T ss_pred             HHHhhhhccc-ceeeccHHHHHHHHHHHHHH
Confidence            8888877776 99999998887766655544

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=97.42  E-value=0.0027  Score=71.56  Aligned_cols=158  Identities=15%  Similarity=0.044  Sum_probs=96.6

Q ss_pred             HHHHhhcCCchhHHHHHHHHHhHHHHHHHHHHHHhhcc-cCChHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccccc
Q 008137          302 TIVQFAGFASKSTALALSLVTSGLNALGSIVSMAFVDK-YGRRRLMIVSMFGLSSCLVALAVVFFQAAIHAPTVSQIESS  380 (576)
Q Consensus       302 ~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dk-~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  380 (576)
                      .|+....+.+...+..+........-+..+++|+++|+ +||++.+..+.++..++.+++.+...+...+          
T Consensus        12 lYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~----------   81 (654)
T TIGR00926        12 LYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGH----------   81 (654)
T ss_pred             HHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCccccc----------
Confidence            33333333355555555555555566778889999996 6999999999888888887766531100000          


Q ss_pred             cCCCCCCCCcccccCCCCcccccccccccccccCCCCCCCCCCcccccccccccccccccccccccCCCCcchhHHHHHH
Q 008137          381 HFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAHKGNEYLPGACLIDEKSTDTLCSDEHRTYFISGCPSSFGWLAVVFL  460 (576)
Q Consensus       381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~  460 (576)
                                                                                          +. .....++.+
T Consensus        82 --------------------------------------------------------------------~~-~~~~~l~gL   92 (654)
T TIGR00926        82 --------------------------------------------------------------------PL-HDLLDLLGL   92 (654)
T ss_pred             --------------------------------------------------------------------ch-HHHHHHHHH
Confidence                                                                                00 001122223


Q ss_pred             HHHHHHhcCCcccccchhcccccccc---ccccchhHHHHHHHHHHHHHHHHHHHHHHhh-------ccchhhHHHHHHH
Q 008137          461 GAYIITYSPGMGTAPWIVNSEIYPLR---YRGVGGGIAAVSNWTSNLIVSLTFLTLTEAL-------GSAGTFLLFAGFS  530 (576)
Q Consensus       461 ~~~~~~~~~~~~~~~~~~~~e~~p~~---~rg~~~g~~~~~~~~g~~~~~~~~~~l~~~~-------g~~~~~~~~~~~~  530 (576)
                      .+..++.+ ++-|...+...|.++++   .+-....+.....++|+++++.+.+.+.+..       +|...|.+.++++
T Consensus        93 aLia~G~G-giKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~~i~m  171 (654)
T TIGR00926        93 ALIALGTG-GIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVPAILM  171 (654)
T ss_pred             HHHHhhcc-ccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHHHHHH
Confidence            33222222 33345556777777643   3556677778888999999999988887543       4777888888888


Q ss_pred             HHHHHHHHh
Q 008137          531 LLGLVAIYL  539 (576)
Q Consensus       531 ~i~~~~~~~  539 (576)
                      ++++++...
T Consensus       172 ~ia~lvf~~  180 (654)
T TIGR00926       172 ILALIVFMA  180 (654)
T ss_pred             HHHHHHHHH
Confidence            877766544

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.41  E-value=0.0014  Score=73.15  Aligned_cols=230  Identities=13%  Similarity=0.000  Sum_probs=128.3

Q ss_pred             HHHHHHHHHHHhhHHHHhhhHHHHHhhcCCchhHHHHHHHHHhHHHHHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHH
Q 008137          281 GVTVQVAQQFVGINTVMYYSPTIVQFAGFASKSTALALSLVTSGLNALGSIVSMAFVDKYGRRRLMIVSMFGLSSCLVAL  360 (576)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dk~grr~~~~~~~~~~~~~~~~~  360 (576)
                      .+.+..+.+......+...+..+=+.+.. +....+++....-+++.+......+..-|..|-+.+-.++++++++.++.
T Consensus       101 ~l~~~~~~q~l~~~y~~s~IttiErRF~i-~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgsll~  179 (735)
T KOG3626|consen  101 LLSLAAFAQGLYVGYFNSVITTIERRFKI-SSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLGSLLF  179 (735)
T ss_pred             HHHHHHHHHHhhhhhhhhhhhhhhhhcCC-CCCcceeEeeecccchhhhhHhHHHhccccCccceeeechhHHHHHHHHH
Confidence            33333444443333333333333333444 56668888888888888888888899999999999999999999999998


Q ss_pred             HHHHHHhhhcCCCccccccccCCCCCCCCcccccCCCCcccccccccccccccCCCCCCCCCCccccccccccccccccc
Q 008137          361 AVVFFQAAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAHKGNEYLPGACLIDEKSTDTLCSDEH  440 (576)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  440 (576)
                      .+.............                      ..+.....-....++|.....    . +.--..+.+..+.++.
T Consensus       180 alPHf~~~~y~~~~~----------------------~~~~~~~~~~~~~s~~~~~~~----~-~~~~~~~~~~~~~~~~  232 (735)
T KOG3626|consen  180 ALPHFFSGPYEYELE----------------------VIKQSVENPSSSLSFCCCNKS----T-NLCRPSPENSKREKES  232 (735)
T ss_pred             hChHHhcCcchhhhh----------------------hhhccccCCccccchhhccCC----c-cccCCCCCcccccccC
Confidence            887654332211110                      000000000011112211100    0 1111122222222222


Q ss_pred             ccccccCCCCcchhHHHHHHHHHHHHhcCCcccccchhccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHhh---
Q 008137          441 RTYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEIYPLRYRGVGGGIAAVSNWTSNLIVSLTFLTLTEAL---  517 (576)
Q Consensus       441 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~g~~~~~~~~~~l~~~~---  517 (576)
                      +.++         |..+++.-++.+....-..++..+|+.|....+.-....|+...+..+|=++|-++.+.....+   
T Consensus       233 ~~~~---------~llff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~  303 (735)
T KOG3626|consen  233 TSYP---------FLLFFLGQLLLGIGATPIFTLGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDF  303 (735)
T ss_pred             Cchh---------HHHHHHHHHHhhcCCCCCccCCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeecc
Confidence            2222         3333333333333444456677889999998888888889988888888777777766654321   


Q ss_pred             ----------------ccchhhHHHHHHHHHHHHHHHhhccCCCCCC
Q 008137          518 ----------------GSAGTFLLFAGFSLLGLVAIYLLVPETKGLA  548 (576)
Q Consensus       518 ----------------g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  548 (576)
                                      -|+..|++.+.++++..+..++ .|++..++
T Consensus       304 ~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~a~p~f~-fPk~lp~~  349 (735)
T KOG3626|consen  304 GLSPIGITPTDPRWIGAWWLGFLICGALLLFSAVPLFF-FPKELPKS  349 (735)
T ss_pred             ccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHh-CcccCccc
Confidence                            1444677777777777776544 55544433

>PF12832 MFS_1_like: MFS_1 like family

Probab=97.24  E-value=0.0023  Score=51.01  Aligned_cols=67  Identities=18%  Similarity=0.246  Sum_probs=55.4

Q ss_pred             HHHHHHHhhHHHHhhhHHHHHhhcCCchhHHHHHHHHHhHHHHHHHHHHHHhhcccCChHHHHHHHHH
Q 008137          285 QVAQQFVGINTVMYYSPTIVQFAGFASKSTALALSLVTSGLNALGSIVSMAFVDKYGRRRLMIVSMFG  352 (576)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dk~grr~~~~~~~~~  352 (576)
                      ..++.+.+...+.-|.|.++++.|. +..+.+.+..+..+..+++.++.|.++||.++++.+.....+
T Consensus         8 ~yf~~f~~~g~~~Pfl~~~~~~~Gl-~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~   74 (77)
T PF12832_consen    8 FYFFYFAALGCLYPFLPLYLKQLGL-SPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLF   74 (77)
T ss_pred             HHHHHHHHHHHHHhhhhHhhhhcCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHH
Confidence            3445566677888889999998877 788889999999999999999999999999998887655443

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=97.18  E-value=7.7e-05  Score=82.24  Aligned_cols=71  Identities=15%  Similarity=-0.040  Sum_probs=0.0

Q ss_pred             HHhhhHHHHHhhcCCchhHHHHHHHHHhHHHHHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHHHHHHHHh
Q 008137          296 VMYYSPTIVQFAGFASKSTALALSLVTSGLNALGSIVSMAFVDKYGRRRLMIVSMFGLSSCLVALAVVFFQA  367 (576)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dk~grr~~~~~~~~~~~~~~~~~~~~~~~~  367 (576)
                      +...++.+ +.....+..+.+.+....-++.++..++..++.+|..|-+.+..+.++++++.+++.+.....
T Consensus        22 ~~~~ltti-ErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~lPhf~~   92 (539)
T PF03137_consen   22 VNSSLTTI-ERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFALPHFLS   92 (539)
T ss_dssp             ------------------------------------------------------------------------
T ss_pred             HHHHHHHH-HHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHhccHhhc
Confidence            33333443 344444778889999999999999999999999998888888899999999999888876543

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]

Probab=97.17  E-value=0.078  Score=55.60  Aligned_cols=175  Identities=15%  Similarity=0.119  Sum_probs=86.6

Q ss_pred             HHhhhhhhhhHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHH-HHHHHHHHHHh
Q 008137           38 GLLFGYDTGVISGALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADV-LFFIGAIIMAI  116 (576)
Q Consensus        38 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~-~~~i~~~~~~~  116 (576)
                      .+-.......+....+++.+++...+.+............+...+....--++.-|.-+|....+... +..+..+..+.
T Consensus        27 GiG~LlpWN~fiTa~~y~~~~~~~~~~~~~F~~~~~~~a~i~~ll~~~~n~~~~~~~~~~~~~~l~~~~il~i~~l~~~~  106 (406)
T KOG1479|consen   27 GIGTLLPWNMFITASDYYYYRFPGYHNSKNFTSSYTLAAQIPLLLFNLLNAFLNTRLRTRVGYLLSLIAILFIVTLDLAL  106 (406)
T ss_pred             hcccccchHhhhccHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            33345566777788888888887665544333444444444444444444555555222221111111 11111222222


Q ss_pred             -------cchHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHH
Q 008137          117 -------APQPWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFTKAPGTWRWM  189 (576)
Q Consensus       117 -------~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~Wr~~  189 (576)
                             ...+...++.-.+.|++.|..........++ +|++.-...++-.+.+..+-..+.-+......+...+=-.-
T Consensus       107 v~~~~~~~~ff~vt~~~vv~~~~a~a~~qgs~~G~a~~-~P~~ytqavm~G~a~aG~l~Sl~~i~tka~~~~~~~sA~~y  185 (406)
T KOG1479|consen  107 VKTDTWTNGFFLVTLIIVVLLNLANAVVQGSLYGLAGL-FPSEYTQAVMSGQALAGTLTSLLRILTKAAFSDSRTSALIY  185 (406)
T ss_pred             hccCCccchhHHHHHHHHHHHhhhhhhhccchhhhhhc-CCHHHHHHHHhcchhHhHHHHHHHHHHHHhcCCCCceeehh
Confidence                   1235666677788888888766666555444 56665444333333332222222222222222222223344


Q ss_pred             HHHhHHHHHHHHHHHhhccCChhH
Q 008137          190 LGVAGLPAVVQFGLMMMLPESPRW  213 (576)
Q Consensus       190 f~v~~~~~~~~~~~~~~l~esp~~  213 (576)
                      |.+..++.++.++++..+|+.|-.
T Consensus       186 F~~s~~~~llC~i~y~~l~~lpf~  209 (406)
T KOG1479|consen  186 FITSTVILLLCFVLYLVLPKLPFV  209 (406)
T ss_pred             HHHHHHHHHHHHHHHHHhhcchHH
Confidence            555666666666666677777643

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=96.77  E-value=0.013  Score=63.12  Aligned_cols=67  Identities=27%  Similarity=0.314  Sum_probs=53.2

Q ss_pred             hhccccc---cccccccchhHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHhhccCC
Q 008137          477 IVNSEIY---PLRYRGVGGGIAAVSNWTSNLIVSLTFLTLTEALGSAGTFLLFAGFSLLGLVAIYLLVPET  544 (576)
Q Consensus       477 ~~~~e~~---p~~~rg~~~g~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~  544 (576)
                      ++..|..   |.+ ||...+.......+|++++..+.|.+.+..+++..|.+.+.+.++..+..+++.+|.
T Consensus       109 a~vvE~~~~~p~~-~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~~~~~~l~~~~~~~~~~e~  178 (433)
T PF03092_consen  109 ALVVELARREPES-RGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLISAALPLLMLIVALFLLEER  178 (433)
T ss_pred             HHHHHHhhcCCch-hHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHHHHHHHHHHHHHHHhhhhc
Confidence            3444544   333 777788888889999999999999999999999999998888888877776767763

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=96.74  E-value=0.039  Score=58.13  Aligned_cols=139  Identities=15%  Similarity=0.132  Sum_probs=90.8

Q ss_pred             HHHHHHHhhhhhhhhHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHH-----
Q 008137           33 SAGIGGLLFGYDTGVISGALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLF-----  107 (576)
Q Consensus        33 ~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~-----  107 (576)
                      -+.+.++..++..+.+.+.+.. -.++....++.   .+...+|.+|-.++.--...+  |+  |+..+.+.+-.     
T Consensus       251 PL~lVY~aEY~InqGv~~tl~f-p~~~~~~r~~Y---~~Y~~~YQ~GVFISRSS~~~~--ri--r~lwils~LQ~~nl~~  322 (402)
T PF02487_consen  251 PLFLVYFAEYFINQGVAPTLLF-PNSFFSPRDQY---RWYQLLYQLGVFISRSSLPFF--RI--RRLWILSLLQVINLVF  322 (402)
T ss_pred             HHHHHHHHHHHHHhchHHHhcC-CccCCCHHHHH---HHHHHHHHHHHhhhhcceeee--eh--hhHHHHHHHHHHHHHH
Confidence            3445566666555544443221 12222233333   666667776655553322111  23  44444333322     


Q ss_pred             HHHHHHHHhcchHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 008137          108 FIGAIIMAIAPQPWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAF  179 (576)
Q Consensus       108 ~i~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l  179 (576)
                      .+...+.-+.++.|..++.-+..|+..|..++-....+.|-.|+++|-.+++....+-++|..++.+++-.+
T Consensus       323 ~~l~s~~~fipsi~ivf~lif~eGLlGGa~YVNtF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~l  394 (402)
T PF02487_consen  323 LLLQSWYRFIPSIWIVFVLIFYEGLLGGASYVNTFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPL  394 (402)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            222223445688999999999999999999999999999999999999999999999999999998887665

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>PRK03612 spermidine synthase; Provisional

Probab=96.66  E-value=0.13  Score=56.70  Aligned_cols=153  Identities=13%  Similarity=0.018  Sum_probs=87.4

Q ss_pred             hhhhhhhhHHHHHHHHHH-hhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHH-HHHHHH-HHHHHH--
Q 008137           40 LFGYDTGVISGALLYIKE-DFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLG-ADVLFF-IGAIIM--  114 (576)
Q Consensus        40 ~~~~~~~~~~~~~~~i~~-~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~-~~~~~~-i~~~~~--  114 (576)
                      +.++..-.+-.++..+.. -+|.+..+.   +.+.+++.+|.++|+.+++++.++--|+...+- .+.+.+ ++..+.  
T Consensus        25 ~sg~~~L~yEv~~~r~l~~~~G~s~~~~---~~ii~~fl~glalGs~l~~~~~~~~~~~~~~~e~~i~l~~~~~~~ll~~  101 (521)
T PRK03612         25 VCAACGLVYELLLGTLASYLLGDSVTQF---STVIGLMLFAMGVGALLSKYLLRDAAAGFVAVELLLALLGGLSALILYA  101 (521)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCchHHHH---HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444444433 345554454   999999999999999999988744333322111 111111 111111  


Q ss_pred             --HhcchH-HHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhcC-CCchhHHHH
Q 008137          115 --AIAPQP-WVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFTK-APGTWRWML  190 (576)
Q Consensus       115 --~~~~~~-~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~-~~~~Wr~~f  190 (576)
                        ++.... ..++..-++.|+..|+..|....+..+... ++-+...|-......+|.++|.++.+++.- ..|..+..+
T Consensus       102 ~~~~~~~~~~~~~~~~~~~~~l~G~~~Pl~~~~~~~~~~-~~~g~~~g~ly~~ntlGa~~G~l~~~~vLlp~lG~~~t~~  180 (521)
T PRK03612        102 AFAFQGLSRLLLYVLVLLIGLLIGMEIPLLMRILQRIRD-QHLGHNVATVLAADYLGALVGGLAFPFLLLPRLGLIRTAA  180 (521)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cchhhhhhhhHhHHhHHHHHHHHHHHHHHHHhcchHHHHH
Confidence              111111 223445567788888888888777665432 224566778888888888888888777544 455455555


Q ss_pred             HHhHHH
Q 008137          191 GVAGLP  196 (576)
Q Consensus       191 ~v~~~~  196 (576)
                      ++..+-
T Consensus       181 ~~a~l~  186 (521)
T PRK03612        181 LTGSLN  186 (521)
T ss_pred             HHHHHH
Confidence            544433

>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS)

Probab=96.52  E-value=0.02  Score=56.11  Aligned_cols=56  Identities=18%  Similarity=0.313  Sum_probs=38.2

Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHh---cC-CCchhHHHHHHhHHHHHHHHHHHhhc
Q 008137          152 KIRGALVSANGFLITGGQFLAYLINLAF---TK-APGTWRWMLGVAGLPAVVQFGLMMML  207 (576)
Q Consensus       152 ~~R~~~~~~~~~~~~~G~~l~~~l~~~l---~~-~~~~Wr~~f~v~~~~~~~~~~~~~~l  207 (576)
                      |+|+........+.++|.++.-..-..-   .+ ...+|++++.+.+++.++.++.+..+
T Consensus         2 k~K~~~s~~n~~gf~iG~ii~~ipF~~~~~~~~~~~~~W~~I~si~~lL~~IpLIly~if   61 (267)
T PF07672_consen    2 KKKSILSQFNPWGFNIGTIIVNIPFLISSSVVIALTNNWQWILSIFILLIFIPLILYIIF   61 (267)
T ss_pred             CccceeeeeccccchhhHHHHHhhHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            5677777788888888888764432111   00 11259999999999888877776555

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=96.50  E-value=0.057  Score=49.31  Aligned_cols=109  Identities=13%  Similarity=0.014  Sum_probs=73.5

Q ss_pred             HHHHHHhHHHHHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccccccCCCCCCCCcccccCC
Q 008137          317 ALSLVTSGLNALGSIVSMAFVDKYGRRRLMIVSMFGLSSCLVALAVVFFQAAIHAPTVSQIESSHFGGNNTCPAYITDGN  396 (576)
Q Consensus       317 ~~~~~~~~~~~ig~~~~g~l~dk~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  396 (576)
                      .-..+.+....+..++.+.+.+++|.|+.++++.+...+-.....+..                                
T Consensus        41 ~slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~~~~~--------------------------------   88 (156)
T PF05978_consen   41 YSLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASFFYPN--------------------------------   88 (156)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhh--------------------------------
Confidence            344556666778888899999999999999988887765554433321                                


Q ss_pred             CCcccccccccccccccCCCCCCCCCCcccccccccccccccccccccccCCCCcchhHHHHHHHHHHHHhcCCcccccc
Q 008137          397 AKSWNCMDCLKAKCGFCAHKGNEYLPGACLIDEKSTDTLCSDEHRTYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAPW  476 (576)
Q Consensus       397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  476 (576)
                                                                              .+..+....+.+++.+..+. ..-
T Consensus        89 --------------------------------------------------------~~~l~~~s~l~G~~~a~lW~-aqg  111 (156)
T PF05978_consen   89 --------------------------------------------------------SYTLYPASALLGFGAALLWT-AQG  111 (156)
T ss_pred             --------------------------------------------------------HHHHHHHHHHHhhhhHHhhH-hhh
Confidence                                                                    13444445555555554433 333


Q ss_pred             hhccccccccccccchhHHHHHHHHHHHHHHHHHHHHH
Q 008137          477 IVNSEIYPLRYRGVGGGIAAVSNWTSNLIVSLTFLTLT  514 (576)
Q Consensus       477 ~~~~e~~p~~~rg~~~g~~~~~~~~g~~~~~~~~~~l~  514 (576)
                      .++.+...++.+++-.|+.-.....+.++|.++.-.+.
T Consensus       112 ~ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~~~  149 (156)
T PF05978_consen  112 TYLTSYSTEETIGRNTGIFWAIFQSSLIFGNLFLFFIF  149 (156)
T ss_pred             HHHHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56677777888898888888888887777776655443

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=96.39  E-value=0.041  Score=58.05  Aligned_cols=53  Identities=19%  Similarity=0.116  Sum_probs=44.3

Q ss_pred             chhHHHHHHHHHhHHHHHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHHHHH
Q 008137          311 SKSTALALSLVTSGLNALGSIVSMAFVDKYGRRRLMIVSMFGLSSCLVALAVV  363 (576)
Q Consensus       311 ~~~~~~~~~~~~~~~~~ig~~~~g~l~dk~grr~~~~~~~~~~~~~~~~~~~~  363 (576)
                      +...+.+++.++.+..++..+.+.|+.||.|-|....++..+..++..+=...
T Consensus        77 s~~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt~ln~iGa~Ir~is  129 (480)
T KOG2563|consen   77 SSSAADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGTVLNGIGAWIRLIS  129 (480)
T ss_pred             chHHHHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHHHHHHHHHHHhhhc
Confidence            56677788888888899999999999999999999999988888886654433

>KOG3097 consensus Predicted membrane protein [Function unknown]

Probab=96.15  E-value=1.8  Score=44.05  Aligned_cols=101  Identities=14%  Similarity=0.144  Sum_probs=68.6

Q ss_pred             HHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCc--chh
Q 008137           77 VAGAIFGAGFGGWINDRFGRKISLLGADVLFFIGAIIMAIAPQPWVIILGRIFVGLGVGMASMTAPLYISEASPA--KIR  154 (576)
Q Consensus        77 ~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~--~~R  154 (576)
                      .+..+..+++.+.+..++|.|.+++++.......- ..-+=+.+..++-.-.+.|+|.+..+..--+|+++.-..  +.|
T Consensus        68 y~~l~~s~m~~~~~Ir~~g~K~tm~lav~~Y~lyi-A~Nl~pr~~tlVPa~~~~G~aa~p~W~SkgtYlT~~g~~ya~~~  146 (390)
T KOG3097|consen   68 YLSLIDSSMFMPLLIRFLGTKWTMVLAVFPYALYI-AANLEPRYETLVPAGLVLGMAAGPIWASKGTYLTPMGQNYANQR  146 (390)
T ss_pred             hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH-HhhcchhHHhhccHHHhhccccccccccCcceecHHHHHHHHhh
Confidence            34445555666688999999999998887665432 222336788899999999999999998877777665432  233


Q ss_pred             -------------hHHHHHHHHHHHHHHHHHHHHHHH
Q 008137          155 -------------GALVSANGFLITGGQFLAYLINLA  178 (576)
Q Consensus       155 -------------~~~~~~~~~~~~~G~~l~~~l~~~  178 (576)
                                   +..+.+++...-+|..++..+-..
T Consensus       147 ~~q~~~~~~~~ffg~Ffii~~~~qv~gn~issli~~~  183 (390)
T KOG3097|consen  147 GEQAGDGMKVRFFGEFFIIFQCAQVWGNLISSLIMTL  183 (390)
T ss_pred             hhhccCceeeeehhHHHHHHHHHHHHHHHHHHHHHHH
Confidence                         344556666666676666555443

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=96.12  E-value=0.21  Score=54.10  Aligned_cols=42  Identities=7%  Similarity=-0.003  Sum_probs=37.8

Q ss_pred             ccchhccccccccccccchhHHHHHHHHHHHHHHHHHHHHHH
Q 008137          474 APWIVNSEIYPLRYRGVGGGIAAVSNWTSNLIVSLTFLTLTE  515 (576)
Q Consensus       474 ~~~~~~~e~~p~~~rg~~~g~~~~~~~~g~~~~~~~~~~l~~  515 (576)
                      +.|.+.+|++..++..+-.++....+++|.++++.+...+.+
T Consensus       149 lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~~  190 (472)
T TIGR00769       149 LFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFSK  190 (472)
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            668899999999999999999999999999999988887763

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.80  E-value=0.91  Score=48.87  Aligned_cols=141  Identities=15%  Similarity=0.146  Sum_probs=92.2

Q ss_pred             HHHHhhhhhhhhHHHHHHHHHHhh-ccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhh---ccCchHHHHHHHHHHHHHH
Q 008137           36 IGGLLFGYDTGVISGALLYIKEDF-RDVEKKTWLQELIVSMAVAGAIFGAGFGGWIND---RFGRKISLLGADVLFFIGA  111 (576)
Q Consensus        36 l~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~d---r~Grr~~~~~~~~~~~i~~  111 (576)
                      ...+..+...+......|.-..-- ..........++..-...+|..++..+.+.+.+   ++||++.+.++..+..++.
T Consensus       247 ~~f~~tG~~~Sf~~~iypt~i~ft~~~~~n~~~~~ai~~~~~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~  326 (461)
T KOG3098|consen  247 PFFFYTGLETSFWISIYPTCISFTRKLGSNTTYLIAIYSIGIGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGF  326 (461)
T ss_pred             HHHHHHHHHHHHHHhccchhhhhhhhccCcchhHHHHHHHHHhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHH
Confidence            334445556555555555533222 222222222244444444455555555666664   5799999999988888887


Q ss_pred             HHHHhc------------------chHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHH
Q 008137          112 IIMAIA------------------PQPWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAY  173 (576)
Q Consensus       112 ~~~~~~------------------~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~  173 (576)
                      ++.-.+                  +++...++.-+++|++-+......+.+++..+ +++|..+.++...-..++..++.
T Consensus       327 ~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~l~G~~D~~~~t~~~~ii~~~~-~~~~~~~fsi~kfyq~~~s~v~~  405 (461)
T KOG3098|consen  327 LLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIGFLLGFGDACFNTQRYVIIALLY-PDDRAQAFSLFKFYQSVASCVAF  405 (461)
T ss_pred             HHHhccccccCCCCCCcccccccccchhHHHHHHHHHhhHHHHHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHHHHh
Confidence            776553                  13556777789999999999999999999999 66788888888888777776654


Q ss_pred             HHHH
Q 008137          174 LINL  177 (576)
Q Consensus       174 ~l~~  177 (576)
                      ....
T Consensus       406 f~~~  409 (461)
T KOG3098|consen  406 FFSP  409 (461)
T ss_pred             hhhh
Confidence            4443

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=95.71  E-value=0.67  Score=49.67  Aligned_cols=149  Identities=13%  Similarity=0.194  Sum_probs=106.5

Q ss_pred             HHHHHHHHHHhhhhhhhhHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHH
Q 008137           30 LALSAGIGGLLFGYDTGVISGALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFI  109 (576)
Q Consensus        30 ~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i  109 (576)
                      -++..+++..+-++.--.++..+..+.+.-|.++...   |..-+...+....+.+.+.++.+|+|..+.=++++.....
T Consensus       259 ~vflas~alalLY~TVLsf~~lmt~yl~~~G~s~~~i---gi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~  335 (432)
T PF06963_consen  259 PVFLASFALALLYFTVLSFGGLMTAYLKSQGYSPSVI---GIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWV  335 (432)
T ss_pred             HHHHHHHHHHHHHHHHhcCcHHHHHHHHHCCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence            4555566655556555556666666667778888888   9999999999999999999999999988777776654433


Q ss_pred             HHHHHHh------cc----hHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 008137          110 GAIIMAI------AP----QPWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAF  179 (576)
Q Consensus       110 ~~~~~~~------~~----~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l  179 (576)
                      ...++..      ++    +...++.+-.+.=+|.=+.-.+..-++.|..|+++||...|.-....++--++.+.+.-.+
T Consensus       336 ~L~~~v~~~~~~~~~~~~~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~~~~ii~  415 (432)
T PF06963_consen  336 CLALCVVSFWAPGSPFSSISAYLLLGGIALSRIGLWSFDLAVTQIMQENVPESERGAVSGVQNSLQSLFELLSFVLTIIF  415 (432)
T ss_pred             HHHHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            3322221      22    2333443444444455456677788899999999999999999999998888888776655


Q ss_pred             cC
Q 008137          180 TK  181 (576)
Q Consensus       180 ~~  181 (576)
                      .+
T Consensus       416 ~~  417 (432)
T PF06963_consen  416 PR  417 (432)
T ss_pred             CC
Confidence            43

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=95.48  E-value=0.43  Score=46.79  Aligned_cols=58  Identities=21%  Similarity=0.226  Sum_probs=39.3

Q ss_pred             HHHhhhHHHHHhhcCCch-hHHHHHHHHHhHHHHHHHHHHHHhhcccCChHHHHHHHHH
Q 008137          295 TVMYYSPTIVQFAGFASK-STALALSLVTSGLNALGSIVSMAFVDKYGRRRLMIVSMFG  352 (576)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ig~~~~g~l~dk~grr~~~~~~~~~  352 (576)
                      ......+.+..+...... ...+.......+...++.++.|.+.||.|||+.+..+...
T Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~   78 (338)
T COG0477          20 LLSPALPLLLSTLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLL   78 (338)
T ss_pred             hHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHH
Confidence            333445555555544332 3556666777777778889999999999999777766654

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=94.99  E-value=0.034  Score=58.73  Aligned_cols=87  Identities=21%  Similarity=0.208  Sum_probs=54.0

Q ss_pred             hhHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcCCchhHHHHHHHHHhHHHHHHHHHHHHhhcc----cCChHHHHH-HHH
Q 008137          277 GLYAGVTVQVAQQFVGINTVMYYSPTIVQFAGFASKSTALALSLVTSGLNALGSIVSMAFVDK----YGRRRLMIV-SMF  351 (576)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dk----~grr~~~~~-~~~  351 (576)
                      .++....+.+..++ ++..-..|.+.|++..|...+ ..+..-...-+.+++-.++.|..+||    +||||..+. +..
T Consensus        33 ~li~v~~ia~Gvqf-~wA~elsy~tPyl~~lGvphk-~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~  110 (498)
T KOG0637|consen   33 KLISVASIAAGVQF-GWALELSYLTPYLQSLGVPHK-WSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSL  110 (498)
T ss_pred             HHHHHHHHHHHHHH-HHHHHhccccHHHHHcCCCcc-cccccccccccccceecccccccccccccccccccchHHHhhH
Confidence            34444444444444 456667778888888888444 33333344444567778889999996    688876654 455


Q ss_pred             HHHHHHHHHHHHHH
Q 008137          352 GLSSCLVALAVVFF  365 (576)
Q Consensus       352 ~~~~~~~~~~~~~~  365 (576)
                      ...++++++.+...
T Consensus       111 ~i~~~l~Lig~aaD  124 (498)
T KOG0637|consen  111 LIAVSLFLIGYAAD  124 (498)
T ss_pred             HHHHHHhhhhhHhh
Confidence            55666666665543

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=94.87  E-value=0.38  Score=50.87  Aligned_cols=57  Identities=9%  Similarity=0.003  Sum_probs=38.0

Q ss_pred             hcCCchhHHHHHHHHHhHHHHHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHHHHH
Q 008137          307 AGFASKSTALALSLVTSGLNALGSIVSMAFVDKYGRRRLMIVSMFGLSSCLVALAVV  363 (576)
Q Consensus       307 ~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dk~grr~~~~~~~~~~~~~~~~~~~~  363 (576)
                      .+....+...-+.-+..=..++..+....+.|.++.|++++++.+...+...++.+.
T Consensus        35 kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~   91 (412)
T PF01770_consen   35 KNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFG   91 (412)
T ss_pred             cCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence            455433333333333333345666777889999999999999888888877776655

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters

Probab=94.04  E-value=0.47  Score=38.42  Aligned_cols=71  Identities=17%  Similarity=0.072  Sum_probs=58.6

Q ss_pred             HHHHhhhHHHHHhhcCCchhHHHHHHHHHhHHHHHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHHHHHHH
Q 008137          294 NTVMYYSPTIVQFAGFASKSTALALSLVTSGLNALGSIVSMAFVDKYGRRRLMIVSMFGLSSCLVALAVVFF  365 (576)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dk~grr~~~~~~~~~~~~~~~~~~~~~~  365 (576)
                      +.++-..|...++.+. +..+++.+....+++.++|++...++.++..+++.+..+.+...+..+.+.+...
T Consensus         9 FayTplLP~M~~~~~l-s~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~~~   79 (85)
T PF06779_consen    9 FAYTPLLPLMQADGGL-SLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALTHS   79 (85)
T ss_pred             HHHHhHhHHHHHhcCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            3445567777777666 8889999999999999999999999999988888888888888888888777643

Note that many members are hypothetical proteins.

>PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs

Probab=92.92  E-value=0.024  Score=58.18  Aligned_cols=37  Identities=14%  Similarity=0.043  Sum_probs=1.9

Q ss_pred             cccchhccccccccccccchhHHHHHHHHHHHHHHHH
Q 008137          473 TAPWIVNSEIYPLRYRGVGGGIAAVSNWTSNLIVSLT  509 (576)
Q Consensus       473 ~~~~~~~~e~~p~~~rg~~~g~~~~~~~~g~~~~~~~  509 (576)
                      +....+..+..+++.|..+..+...+-.+|-.+|..+
T Consensus       267 tl~m~~~p~~v~~~e~e~aG~~~~~~L~~Gl~~Gs~l  303 (309)
T PF01733_consen  267 TLAMMYAPKSVSPEERELAGSVMSFFLSFGLFIGSVL  303 (309)
T ss_dssp             HHHH---------------------------------
T ss_pred             hceeeeCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455666777888888888877777777776666554

Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A.

>PRK03612 spermidine synthase; Provisional

Probab=92.84  E-value=3.7  Score=45.38  Aligned_cols=47  Identities=23%  Similarity=0.241  Sum_probs=34.0

Q ss_pred             cccchhHHHHHHHHHHHHHHHHHHHHHH-hhccchhhHHHHHHHHHHH
Q 008137          488 RGVGGGIAAVSNWTSNLIVSLTFLTLTE-ALGSAGTFLLFAGFSLLGL  534 (576)
Q Consensus       488 rg~~~g~~~~~~~~g~~~~~~~~~~l~~-~~g~~~~~~~~~~~~~i~~  534 (576)
                      .|...|-...++.+|+++|+++.+++.- ..|...+.++.+.+.++..
T Consensus       143 ~g~~~g~ly~~ntlGa~~G~l~~~~vLlp~lG~~~t~~~~a~l~~~~a  190 (521)
T PRK03612        143 LGHNVATVLAADYLGALVGGLAFPFLLLPRLGLIRTAALTGSLNLLAA  190 (521)
T ss_pred             hhhhhhhhHhHHhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence            4667788888999999999999887754 6776666555555554443

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=91.63  E-value=2.3  Score=45.82  Aligned_cols=112  Identities=11%  Similarity=0.054  Sum_probs=78.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhccCch--HHHHHH--HHHHHHHHHHHHhc---------chHHHHHHHHHHHHhh
Q 008137           67 WLQELIVSMAVAGAIFGAGFGGWINDRFGRK--ISLLGA--DVLFFIGAIIMAIA---------PQPWVIILGRIFVGLG  133 (576)
Q Consensus        67 ~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr--~~~~~~--~~~~~i~~~~~~~~---------~~~~~l~~~R~l~G~~  133 (576)
                      |..-++..++.++-.+|..+..+. .+-++|  .+++.+  =+++.-..++|..-         ++-+..++..++.|+.
T Consensus       307 ~~~~i~~~~fNvgD~vGR~~~~~~-~~p~~~~~~l~i~s~~R~iFIPlf~lcn~~~~~~~p~~~~~d~~~~~~~~l~glt  385 (437)
T TIGR00939       307 FYPIICFLLFNLFDWLGRSLTSKF-MWPDEDSRWLPILSFLRVLFIPLFLLCNYPQRSRLPVFFPGDAYFIILMLLFGFS  385 (437)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhhee-EeeCCCccchHHHHHHHHHHHHHHHHhcCCccccCCeeecccHHHHHHHHHHHHh
Confidence            455677788888888888755442 122333  333322  22344444444332         4667788889999999


Q ss_pred             hhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 008137          134 VGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAF  179 (576)
Q Consensus       134 ~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l  179 (576)
                      .|-....+..+..+..++++|..+-.+...+..+|..+|..++-.+
T Consensus       386 nGy~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l~~~~  431 (437)
T TIGR00939       386 NGYLGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVLSFLF  431 (437)
T ss_pred             hhHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999998888888888888887765443

>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]

Probab=91.54  E-value=10  Score=42.25  Aligned_cols=171  Identities=14%  Similarity=0.120  Sum_probs=97.0

Q ss_pred             HHHHhhcCCchhHHHHHHHHHhHHHHHHHHHHHHhhccc-CChHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccccc
Q 008137          302 TIVQFAGFASKSTALALSLVTSGLNALGSIVSMAFVDKY-GRRRLMIVSMFGLSSCLVALAVVFFQAAIHAPTVSQIESS  380 (576)
Q Consensus       302 ~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dk~-grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  380 (576)
                      ++....+..+...+... ...........+++++++|.+ ||.+.+.++.++..++.+++...........         
T Consensus        63 ylt~~~~~~~~~aa~~v-~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p---------  132 (571)
T KOG1237|consen   63 YLTLELHASGGGAANNV-NAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLP---------  132 (571)
T ss_pred             HHHHHhccchHHHHHHH-HHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC---------
Confidence            33344444443333333 334444567778899999965 8888888888888888777666544322110         


Q ss_pred             cCCCCCCCCcccccCCCCcccccccccccccccCCCCCCCCCCcccccccccccccccccccccccCCCCcchhH-HHHH
Q 008137          381 HFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAHKGNEYLPGACLIDEKSTDTLCSDEHRTYFISGCPSSFGWL-AVVF  459 (576)
Q Consensus       381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-~~~~  459 (576)
                                                                -.|  ..+..            ...|+....+. .++.
T Consensus       133 ------------------------------------------~~~--~~~~~------------~~~c~~~s~~q~~~~~  156 (571)
T KOG1237|consen  133 ------------------------------------------FMC--KFKPG------------GNVCESPSKLQLAVLY  156 (571)
T ss_pred             ------------------------------------------ccc--cCCCC------------CCcccCcchHHHHHHH
Confidence                                                      000  00000            00122222222 2333


Q ss_pred             HHHHHHHhc-CCcccccchhccccccc----cccc--cchhHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHH
Q 008137          460 LGAYIITYS-PGMGTAPWIVNSEIYPL----RYRG--VGGGIAAVSNWTSNLIVSLTFLTLTEALGSAGTFLLFAGFSLL  532 (576)
Q Consensus       460 ~~~~~~~~~-~~~~~~~~~~~~e~~p~----~~rg--~~~g~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~i  532 (576)
                      ..+.....+ .+.-|....+-+|-++.    +.+.  .-+.......++|..++-.+..++-+..+|...|.+..++..+
T Consensus       157 ~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~vyiq~~~~w~lgf~i~~~~~~l  236 (571)
T KOG1237|consen  157 GALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTVLVYIQDNVGWKLGFGIPTVLNAL  236 (571)
T ss_pred             HHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHHHHhhhhcccceeeccHHHHHHHH
Confidence            333333322 23345555677777762    2223  4455556667778888777777777888999888888887777


Q ss_pred             HHHHHH
Q 008137          533 GLVAIY  538 (576)
Q Consensus       533 ~~~~~~  538 (576)
                      +.++.+
T Consensus       237 ai~iF~  242 (571)
T KOG1237|consen  237 AILIFL  242 (571)
T ss_pred             HHHHHH
Confidence            766654

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=91.23  E-value=0.44  Score=50.07  Aligned_cols=83  Identities=13%  Similarity=-0.057  Sum_probs=59.1

Q ss_pred             HHHHHHHHHHHhcCCcccccchhcccccccc---ccccchhHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHH
Q 008137          456 AVVFLGAYIITYSPGMGTAPWIVNSEIYPLR---YRGVGGGIAAVSNWTSNLIVSLTFLTLTEALGSAGTFLLFAGFSLL  532 (576)
Q Consensus       456 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~---~rg~~~g~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~i  532 (576)
                      ..+.+.+...+.+ +.=|....+..|.++++   .|...........++|..+++.+.+++.++.||...|.+.++..++
T Consensus        36 ~~~gL~lia~G~G-~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~in~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~  114 (372)
T PF00854_consen   36 FYIGLALIAVGTG-GIKPNISPFGADQYDEDDDSRRDSFFNWFYWGINIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLL  114 (372)
T ss_dssp             HHHHHHHHHHHHH-CCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccc-cccccHHHHHHHHhcccchhhhhhhHHHHHHHHhhhhHhhcccchhhccccchhhhhhHHHHHHHH
Confidence            3444444434333 33455557778888765   3455566678888999999999999999999999999999988888


Q ss_pred             HHHHHHh
Q 008137          533 GLVAIYL  539 (576)
Q Consensus       533 ~~~~~~~  539 (576)
                      +.+..+.
T Consensus       115 ~~~~f~~  121 (372)
T PF00854_consen  115 ALIVFLS  121 (372)
T ss_dssp             HHHHHHC
T ss_pred             HHHHHHh
Confidence            8876654

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions

Probab=91.14  E-value=3.5  Score=45.03  Aligned_cols=42  Identities=7%  Similarity=-0.076  Sum_probs=37.7

Q ss_pred             ccchhccccccccccccchhHHHHHHHHHHHHHHHHHHHHHH
Q 008137          474 APWIVNSEIYPLRYRGVGGGIAAVSNWTSNLIVSLTFLTLTE  515 (576)
Q Consensus       474 ~~~~~~~e~~p~~~rg~~~g~~~~~~~~g~~~~~~~~~~l~~  515 (576)
                      ..|.+++|+...++..+-.++....+++|.++++.+...+.+
T Consensus       164 LFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~  205 (491)
T PF03219_consen  164 LFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSS  205 (491)
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            468899999999999999999999999999999988887777

One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane

>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]

Probab=90.09  E-value=9.5  Score=40.31  Aligned_cols=58  Identities=5%  Similarity=-0.158  Sum_probs=31.9

Q ss_pred             hHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcCCchhHHHHHHHHHhHHHHHHHHHHHHhh
Q 008137          278 LYAGVTVQVAQQFVGINTVMYYSPTIVQFAGFASKSTALALSLVTSGLNALGSIVSMAFV  337 (576)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~  337 (576)
                      .+....+........|+.+..-.+++.+...+.+.  +..........+.+...+.-.+-
T Consensus        19 v~~i~~llGiG~LlpWN~fiTa~~y~~~~~~~~~~--~~~F~~~~~~~a~i~~ll~~~~n   76 (406)
T KOG1479|consen   19 VYLIFLLLGIGTLLPWNMFITASDYYYYRFPGYHN--SKNFTSSYTLAAQIPLLLFNLLN   76 (406)
T ss_pred             HHHHHHHHhcccccchHhhhccHHHHHhhcCCCch--HHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445555555666788888888888777655444  33333333444444444443333

>COG3202 ATP/ADP translocase [Energy production and conversion]

Probab=88.75  E-value=18  Score=39.17  Aligned_cols=42  Identities=14%  Similarity=0.003  Sum_probs=35.4

Q ss_pred             ccchhccccccccccccchhHHHHHHHHHHHHHHHHHHHHHH
Q 008137          474 APWIVNSEIYPLRYRGVGGGIAAVSNWTSNLIVSLTFLTLTE  515 (576)
Q Consensus       474 ~~~~~~~e~~p~~~rg~~~g~~~~~~~~g~~~~~~~~~~l~~  515 (576)
                      ..|....|+...++..+-.++.+..++++..++..+..++.+
T Consensus       168 lFw~faNeitt~~eakRFy~lf~l~~ni~lllsg~~~~~~~k  209 (509)
T COG3202         168 LFWQFANEITTIEEAKRFYPLFGLGANISLLLSGEVTSWLSK  209 (509)
T ss_pred             HHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            456788899988999999999999999998888888777665

>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=87.44  E-value=8.9  Score=38.20  Aligned_cols=133  Identities=16%  Similarity=0.135  Sum_probs=84.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhccCch--HHHHHHHHHHHHHHHHHHh----cc---hHHHHHHHHHHHHhhhhhhhhh
Q 008137           70 ELIVSMAVAGAIFGAGFGGWINDRFGRK--ISLLGADVLFFIGAIIMAI----AP---QPWVIILGRIFVGLGVGMASMT  140 (576)
Q Consensus        70 g~i~s~~~~~~~i~~~~~G~l~dr~Grr--~~~~~~~~~~~i~~~~~~~----~~---~~~~l~~~R~l~G~~~g~~~~~  140 (576)
                      |.+.+.+++..++|+-+..++..|-..|  ..+.+..++.++...+..+    +|   ++..=+++-.+.-.+.|..+|.
T Consensus       285 GfiFatFMlASmLGSSla~Rl~s~s~~~ve~ymqivf~vs~a~l~Lpilt~~vsP~kes~~~s~i~F~~~E~cvGlfwPS  364 (454)
T KOG4332|consen  285 GFIFATFMLASMLGSSLASRLLSRSSPKVESYMQIVFLVSIAALLLPILTSSVSPSKESPSESLIGFCLFEACVGLFWPS  364 (454)
T ss_pred             hhHHHHHHHHHHHhhHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHHhccCCCcCCchHHHHHHHHHHHHHhhcchH
Confidence            8999999999999999999888876554  4445554444443333222    22   2222244555556778889999


Q ss_pred             HHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHhHHHHHHHHHH
Q 008137          141 APLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFTKAPGTWRWMLGVAGLPAVVQFGL  203 (576)
Q Consensus       141 ~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~Wr~~f~v~~~~~~~~~~~  203 (576)
                      ...+-+.+.|.++|...+.++..-..+=..++... .-..+..-+-|.+|-++.+...+..+.
T Consensus       365 imkmRsqyIPEearstimNfFRvPLnifvClvLyn-lh~~~~p~~tr~mf~icS~~~~~a~i~  426 (454)
T KOG4332|consen  365 IMKMRSQYIPEEARSTIMNFFRVPLNIFVCLVLYN-LHVDAFPTTTRNMFGICSAFLFVASIL  426 (454)
T ss_pred             HHHHHHhhCCHHHHhhhhhheechhhHhhhhhhee-cccccCccccchhhhhhHHHHHHHHHH
Confidence            99999999999999988887765444322221110 001111124678888887776665444

>KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only]

Probab=86.93  E-value=0.46  Score=47.81  Aligned_cols=131  Identities=14%  Similarity=0.096  Sum_probs=82.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhcc--CchHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhhhhhhhhhHHHHHHh
Q 008137           70 ELIVSMAVAGAIFGAGFGGWINDRF--GRKISLLGADVLFFIGAIIMAIAPQPWVIILGRIFVGLGVGMASMTAPLYISE  147 (576)
Q Consensus        70 g~i~s~~~~~~~i~~~~~G~l~dr~--Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e  147 (576)
                      |.+.-+-.+...+-.+.+....||+  |.|.  .+..++.+.+.++.+++++.++-+.+-.+..++.|....+-..+ +.
T Consensus        65 g~VLLaDilPsL~iKl~~Pff~~rfpf~~Ri--~~~v~~sa~s~~lVafs~s~~~sL~GV~~aSissGlGEiTFL~l-ss  141 (409)
T KOG3880|consen   65 GAVLLADILPSLAIKLTAPFFIHRFPFGFRI--ALVVLLSALSFFLVAFSNSVPMSLLGVVFASISSGLGEITFLAL-SS  141 (409)
T ss_pred             chhhhhhhhHHHHHHHhchhhhhhcccchHH--HHHHHHHhcceEEEEeccchhHHHhhhhhhhhcCCcceeehhhh-hc
Confidence            4455555566666677777788886  4454  44555667778889999999999998888888888665544443 33


Q ss_pred             ccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhcC-CCchhHHHHHHhHHHHHHHHHHHhhc
Q 008137          148 ASPAKIRGALVSANGFLITGGQFLAYLINLAFTK-APGTWRWMLGVAGLPAVVQFGLMMML  207 (576)
Q Consensus       148 ~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~-~~~~Wr~~f~v~~~~~~~~~~~~~~l  207 (576)
                      .+++    ...+.++.+.+..+++|..--..+.+ ..-+-|...++...+.++....++++
T Consensus       142 ~Y~~----~~i~~WSSGTGgAGliGa~SYa~lT~~~~~spk~Tlli~l~lP~lfa~~yf~l  198 (409)
T KOG3880|consen  142 RYPS----IVIAGWSSGTGGAGLIGASSYAFLTSWANLSPKSTLLIMLFLPALFAFAYFFL  198 (409)
T ss_pred             cCCC----ceeccccCCCCcchhhhhhHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHHhe
Confidence            3332    23455555666666666655555554 21136777777666655555554443

>KOG4830 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=84.76  E-value=0.081  Score=51.64  Aligned_cols=66  Identities=18%  Similarity=0.267  Sum_probs=49.3

Q ss_pred             HHHHHHHHhhhhhhhhHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHH---------HhhhccCchHHH
Q 008137           32 LSAGIGGLLFGYDTGVISGALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGG---------WINDRFGRKISL  100 (576)
Q Consensus        32 ~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G---------~l~dr~Grr~~~  100 (576)
                      +.-.++.+.+-+..+..-..+-.+.++.+.++...   ..++-+..+.-++..++.|         +-.||+|||+..
T Consensus        20 f~yGvGHmlNDitAScWFTYlllfltqiglsp~~~---AmlML~GQVtda~st~ftGi~~d~nll~~~idr~G~~~~w   94 (412)
T KOG4830|consen   20 FAYGVGHMLNDITASCWFTYLLLFLTQIGLSPSSR---AMLMLIGQVTDAISTPFTGIFSDSNLLPACIDRIGRRMSW   94 (412)
T ss_pred             eeechhHHHhhHHHHHHHHHHHHHHHHhcCCcchh---HHHHHhhHHHHHHhcccccccccccccHHHhhhhcceeee
Confidence            34467778887777777777777888888888777   6777777777777777765         345799998753

>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]

Probab=84.58  E-value=4.4  Score=43.80  Aligned_cols=67  Identities=19%  Similarity=0.145  Sum_probs=35.1

Q ss_pred             HHHHHHHHHHhhHHHHhhhHHHHHh--hcCCchhHHHHHH---HHHhHHHHHHHHHHHHhhcccCChHHHHHH
Q 008137          282 VTVQVAQQFVGINTVMYYSPTIVQF--AGFASKSTALALS---LVTSGLNALGSIVSMAFVDKYGRRRLMIVS  349 (576)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~---~~~~~~~~ig~~~~g~l~dk~grr~~~~~~  349 (576)
                      +++.++.|....+....-.|++++.  .+. +..+.+..+   .++.+=-+-+.++=...++|+||||..++-
T Consensus         5 L~~LY~lQGiP~GL~~gsiPflL~~~~~~~-sy~q~~~fSla~~PfSlKlLWaPiVDs~y~~~~GRRKSWiiP   76 (544)
T PF13000_consen    5 LVLLYFLQGIPLGLAFGSIPFLLQSMAKKV-SYSQQAIFSLASYPFSLKLLWAPIVDSVYSKRIGRRKSWIIP   76 (544)
T ss_pred             HHHHHHHcCcccccccccchhhhccccCCC-ChhHheeeeeeechhHHHHhhhhhhhhhcccccCCcchhhhH
Confidence            3444555666665555567888887  333 333333222   233332222223334456688999987654

This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane

>PF06912 DUF1275: Protein of unknown function (DUF1275); InterPro: IPR010699 This family consists of several hypothetical bacterial proteins of around 200 residues in length

Probab=81.42  E-value=50  Score=31.42  Aligned_cols=38  Identities=16%  Similarity=0.108  Sum_probs=19.6

Q ss_pred             hccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Q 008137          147 EASPAKIRGALVSANGFLITGGQFLAYLINLAFTKAPG  184 (576)
Q Consensus       147 e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~  184 (576)
                      |+...++|.+.-.......-++.++|..+++.+.+..+
T Consensus       153 ~~~~~~~~~~~~~~~~~~~i~~f~~Ga~~ga~l~~~~~  190 (209)
T PF06912_consen  153 RYLRGKDRALRRALRYLLIILSFFIGAILGALLYRRLG  190 (209)
T ss_pred             HHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            44434444233344445555566666666666655444

The function of this family is unknown although a few members are thought to be membrane proteins.

>KOG2601 consensus Iron transporter [Inorganic ion transport and metabolism]

Probab=81.42  E-value=15  Score=38.35  Aligned_cols=163  Identities=12%  Similarity=-0.018  Sum_probs=79.9

Q ss_pred             HHHHHHHhhhhhhhhHHHHHHHHHHhhcc-chhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHH
Q 008137           33 SAGIGGLLFGYDTGVISGALLYIKEDFRD-VEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFIGA  111 (576)
Q Consensus        33 ~~~l~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~  111 (576)
                      .+.+++++.-...-+.......+...++- +-.-.   ..-..+-.....+...+.|...|+..|+|++...+++.=++.
T Consensus        31 ~Ly~gy~lt~wgdR~W~F~VsL~M~~L~gnsl~lv---Avyglvesgs~lvlg~ivGq~vDg~sr~Kvi~~~L~lqNlSv  107 (503)
T KOG2601|consen   31 FLYLGYFLTTWGDRMWEFSVSLFMILLGGNSLLLV---AVYGLVESGSQLVLGPIVGQWVDGMSRVKVIQTWLLLQNLSV  107 (503)
T ss_pred             hhhHHHHHhHhhHhHHHHHHHHHHHHHcCceehhH---HHHHHHHHhHHHhhHHHHHHHhcchhHHHHHHHHHhhccHHH
Confidence            44556666555444444444444444432 11111   112222233445566778889999999998877666543322


Q ss_pred             HH------HHhc------chHHHHHHHHHHHHhhhhh--hhhhHH--HHHHhcc----CcchhhHHH---HHHHHHHHHH
Q 008137          112 II------MAIA------PQPWVIILGRIFVGLGVGM--ASMTAP--LYISEAS----PAKIRGALV---SANGFLITGG  168 (576)
Q Consensus       112 ~~------~~~~------~~~~~l~~~R~l~G~~~g~--~~~~~~--~~i~e~~----~~~~R~~~~---~~~~~~~~~G  168 (576)
                      ++      .-+.      .++..+..+-.+.-...+.  ....+.  ..-.||.    ..+.+....   +.....-..-
T Consensus       108 ~vagglvi~~l~~~~~~~~t~pv~t~~lvLa~~i~aI~~Las~A~~i~i~RDWvvV~s~g~s~s~lt~mnatir~iDq~t  187 (503)
T KOG2601|consen  108 IVAGGLVITLLVHKDLKSATSPVFTVCLVLANLIAAIAVLASLAGTILIERDWVVVMSEGESPSVLTNMNATIRGIDQST  187 (503)
T ss_pred             HHHHHHHhhheeecchhcccccHHHHHHHHHHHHHHHHHHHHhhheEEecccEEEEecCCCCHHHHhhcchhhhhhhhhh
Confidence            22      2222      2445554444333322111  111111  1123332    234444444   3333333345


Q ss_pred             HHHHHHHHHHhcCCCchhHHHHHHhHHHHHH
Q 008137          169 QFLAYLINLAFTKAPGTWRWMLGVAGLPAVV  199 (576)
Q Consensus       169 ~~l~~~l~~~l~~~~~~Wr~~f~v~~~~~~~  199 (576)
                      ..++|.+.|.+..+.+ -|..-...++-+++
T Consensus       188 n~Lapv~tg~Iitfvs-l~~~~g~f~~w~~v  217 (503)
T KOG2601|consen  188 NLLAPVITGLIITFVS-LRASAGTFAAWALV  217 (503)
T ss_pred             hchhhhhhcccceeec-hhhhhhhhHHHHHH
Confidence            6789999998887766 66655555544444

>KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism]

Probab=80.75  E-value=19  Score=37.37  Aligned_cols=103  Identities=16%  Similarity=0.174  Sum_probs=76.6

Q ss_pred             chhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCch--HHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhhhhhhhh
Q 008137           62 VEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRK--ISLLGADVLFFIGAIIMAIAPQPWVIILGRIFVGLGVGMASM  139 (576)
Q Consensus        62 ~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr--~~~~~~~~~~~i~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~  139 (576)
                      ++......|..-++..+..+++.+..|.+.-.+.|.  ..+.++.+..+...++++-+++.|...++-.+-+.-.....+
T Consensus       266 ~~~~~vyNG~veAv~tlLGa~~~~~~g~l~i~w~r~g~~ll~~~s~~~agllf~m~~t~~Iw~~Ya~yvlfr~~y~l~it  345 (433)
T KOG3810|consen  266 PNPANVYNGAVEAVSTLLGAIAALAAGYLNINWNRWGDLLLAVGSAVQAGLLFIMAQTQHIWVCYAGYVLFRVIYQLTIT  345 (433)
T ss_pred             CCchhhhcCHHHHHHHHHHHHHHHHHHheeeccchhhHHHHHHHHHHhhhhhhhhhcccceehhhhhHHHHHhhHhhhhh
Confidence            333334447888888999999999999999888775  444455555555566777788888887777777776777788


Q ss_pred             hHHHHHHhccCcchhhHHHHHHHHH
Q 008137          140 TAPLYISEASPAKIRGALVSANGFL  164 (576)
Q Consensus       140 ~~~~~i~e~~~~~~R~~~~~~~~~~  164 (576)
                      .+..-+++....+.-|..+|++.+.
T Consensus       346 iA~~~iA~nL~~e~~gLvFGiNTFv  370 (433)
T KOG3810|consen  346 IATFQIARNLSSELFGLVFGINTFV  370 (433)
T ss_pred             HHHHHHHHhhhhhhheeeeehHHHH
Confidence            8888888888777778888877654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	576
4gby_A	491	The Structure Of The Mfs (Major Facilitator Superfa		2e-41
4gby_A	491	The Structure Of The Mfs (Major Facilitator Superfa		6e-04

>pdb|4GBY|A Chain A, The Structure Of The Mfs (Major Facilitator Superfamily) Proton:xylose Symporter Xyle Bound To D-Xylose Length = 491

Iteration: 1
 Score =  167 bits (422), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 118/366 (32%), Positives = 181/366 (49%), Gaps = 44/366 (12%)
Query: 19  NIVWTTPYIMKLALSAGIGGLLFGYDTGVISGAL-----LYIKEDFRDVEKKTWLQELIV 73
           N  + + YI  + L A +GGLLFGYDT VISG +     +++            L    V
Sbjct: 2   NTQYNSSYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCV 61
Query: 74  SMXXXXXXXXXXXXXWINDRFGRKISLLGADVLFFIGAI--------IMAIAPQPWV--- 122
           +              + ++RFGR+ SL  A VLFFI  +          +I P   V   
Sbjct: 62  ASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVY 121
Query: 123 -------IILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLI 175
                   ++ RI  G+GVG+ASM +P+YI+E +PA IRG LVS N F I  GQ L Y +
Sbjct: 122 LAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCV 181
Query: 176 NLAFTKAPGT-------WRWMLGVAGLPAVVQFGLMMMLPESPRWLYRQNKVDEARAILE 228
           N    ++          WR+M     +PA++   L+  +PESPRWL  + K ++A  IL 
Sbjct: 182 NYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQEQAEGILR 241
Query: 229 KIYPADQVEEEVNLLKQSVENEKAEEGLIGKDMISRLKGAFGNKIVRRGLYAGVTVQVAQ 288
           KI       + V  +K S+++ +   G        RL   FG  ++      GV + + Q
Sbjct: 242 KIMGNTLATQAVQEIKHSLDHGRKTGG--------RLL-MFGVGVI----VIGVMLSIFQ 288
Query: 289 QFVGINTVMYYSPTIVQFAGFASKSTALALSLVTSGLNALGSIVSMAFVDKYGRRRLMIV 348
           QFVGIN V+YY+P + +  G AS   AL  +++   +N   +++++  VDK+GR+ L I+
Sbjct: 289 QFVGINVVLYYAPEVFKTLG-ASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQII 347
Query: 349 SMFGLS 354
              G++
Sbjct: 348 GALGMA 353

>pdb|4GBY|A Chain A, The Structure Of The Mfs (Major Facilitator Superfamily) Proton:xylose Symporter Xyle Bound To D-Xylose Length = 491

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 33/122 (27%), Positives = 50/122 (40%), Gaps = 9/122 (7%)
Query: 442 TYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEIYPLRYRGVGGGIAAVSNWT 501
           T F +  P     L+++F   Y+  ++   G   W++ SEI+P   RG    IA  + W 
Sbjct: 361 TAFYTQAPGIVALLSMLF---YVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWL 417
Query: 502 SNLIVSLTFLT------LTEALGSXXXXXXXXXXXXXXXXXIYLLVPETKGLAFEEVEKM 555
           +N  VS TF        L     +                 ++  VPETKG   EE+E +
Sbjct: 418 ANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEELEAL 477
Query: 556 LE 557
            E
Sbjct: 478 WE 479

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	576
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	1e-05
2cfq_A	417	Lactose permease; transport, transport mechanism,	3e-05
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	3e-05
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	5e-05

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* Length = 438

 Score = 46.8 bits (111), Expect = 1e-05
 Identities = 40/326 (12%), Positives = 93/326 (28%), Gaps = 24/326 (7%)

Query: 40  LFGYDTGVISGALLYIKEDFRDVEKKTWLQELIVSMAVAGAIF-GAGFGGWINDRFGRKI 98
           L+     +    L   ++ F      T  Q  ++  A     F      G +  +   K 
Sbjct: 37  LWAVANNLNDILLPQFQQAF----TLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKA 92

Query: 99  SLLGADVLFFIGAIIMAIAPQP---WVIILGRIFVGLGVGMASMTAPLYISEASPAKIRG 155
            ++    L+ +GA +   A +     + ++G   +  G+G     A  +++   P     
Sbjct: 93  GIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGH 152

Query: 156 ALVSANGFLITGGQFLAYLINLAFTKAPGTWRWMLGVAGLPAVVQFGLMMMLPESPRWLY 215
             ++      + G  +A +   +   +    +    +  +           L  S +  Y
Sbjct: 153 FRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPY 212

Query: 216 RQNKVDEARAILEKIYPADQVEEEVNLLKQSVENEKAEEGLIGKDMISRLKGAFGNKIVR 275
                     I+  I     +   + L K                  + L      +  R
Sbjct: 213 M---------IIVAIVLLVAL--LIMLTKFPALQSDNHSDAKQGSFSASLSRLARIRHWR 261

Query: 276 RGLYAGVTVQVAQQFVGINTVMYYSPTIVQFAGFASKSTALALSLVTSGLNALGSIVSMA 335
             + A      AQ       + Y     V+     +   A      T     +G      
Sbjct: 262 WAVLAQFCYVGAQTACWSYLIRY----AVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTW 317

Query: 336 FVDKYG-RRRLMIVSMFGLSSCLVAL 360
            + ++   + L   ++  ++ CL++ 
Sbjct: 318 LISRFAPHKVLAAYALIAMALCLISA 343

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* Length = 417

 Score = 45.7 bits (108), Expect = 3e-05
 Identities = 19/138 (13%), Positives = 40/138 (28%), Gaps = 4/138 (2%)

Query: 30  LALSAGIGGLLFGYDTGVISGALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGW 89
                G+      +D    +    +    F   E+ T +   + +M          F   
Sbjct: 226 SLYVIGVSCTYDVFDQQFAN----FFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPL 281

Query: 90  INDRFGRKISLLGADVLFFIGAIIMAIAPQPWVIILGRIFVGLGVGMASMTAPLYISEAS 149
           I +R G K +LL A  +  +  I  + A     +++ +      V    +    YI+   
Sbjct: 282 IINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQF 341

Query: 150 PAKIRGALVSANGFLITG 167
             +    +          
Sbjct: 342 EVRFSATIYLVCFCFFKQ 359

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} Length = 375

 Score = 45.7 bits (109), Expect = 3e-05
 Identities = 29/155 (18%), Positives = 46/155 (29%), Gaps = 30/155 (19%)

Query: 73  VSMAVAGAIFGAGFG----GWINDRFGRKISLLGADVLFFIGAIIMAIAPQPWVIILGRI 128
           V   +   +   G      G I+DR GR+  +L    +F +  ++        V+I    
Sbjct: 37  VQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSSLTVLIAASA 96

Query: 129 FVGLGVGMASMTAP-----LYISEASPAKIRGALVSANGFL-----ITGGQFLAYLINLA 178
             G+G G+  + A      LY            L            + GG          
Sbjct: 97  MQGMGTGVGGVMARTLPRDLYERTQL-RHANSLLNMGILVSPLLAPLIGGLLDTMW---- 151

Query: 179 FTKAPGTWR---WMLGVAGLPAVVQFGLMMMLPES 210
                  WR     L V      V F +   +PE+
Sbjct: 152 ------NWRACYLFLLVLCA--GVTFSMARWMPET 178

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 Length = 451

 Score = 45.0 bits (107), Expect = 5e-05
 Identities = 47/331 (14%), Positives = 87/331 (26%), Gaps = 53/331 (16%)

Query: 65  KTWLQELIVSMAVAGAIFGA---------GFGGWINDRFGRKISLLGADVLFFIGAIIMA 115
             +L E   S    G                 G ++DR   ++ L    +L     + M 
Sbjct: 51  MPYLVEQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMG 110

Query: 116 IAPQP----WVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITG---G 168
             P       V+ +     G   GM        +      K RG               G
Sbjct: 111 FVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERG---GIVSVWNCAHNVG 167

Query: 169 QFLAYLINLAFTKAPGTWRWMLGVAGLPAVVQFGLMMMLPESPRWLYRQNKVDEARAILE 228
             +  L+ L        W   L +    A++       +            ++E +    
Sbjct: 168 GGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYP 227

Query: 229 KIYPADQVEEEVNLLKQSVENEKAEEGLIGKDMISRLKGAFGNKIVRRGLYAGVTVQVAQ 288
             Y     +E                          ++    NK++           +A 
Sbjct: 228 DDYNEKAEQEL-------------------TAKQIFMQYVLPNKLL---------WYIAI 259

Query: 289 QFVGINTVMYY----SPT-IVQFAGFASKSTALALSLVTSGLNALGSIVSMAFVDKYGRR 343
             V +  + Y     SPT + +   FA   ++ A  L        G+++     DK  R 
Sbjct: 260 ANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAG-IPGTLLCGWMSDKVFRG 318

Query: 344 RLMIVSMFGLSSCLVALAVVFFQAAIHAPTV 374
                 +F ++   +A  V +   A +    
Sbjct: 319 NRGATGVFFMTLVTIATIVYWMNPAGNPTVD 349

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	576
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	100.0
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	100.0
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	100.0
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.98
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.97
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.94
2xut_A	524	Proton/peptide symporter family protein; transport	99.94
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.43
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.37
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.32
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.18
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.18
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.14
2xut_A	524	Proton/peptide symporter family protein; transport	99.13

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=100.00  E-value=5.3e-46  Score=402.66  Aligned_cols=446  Identities=34%  Similarity=0.586  Sum_probs=356.5

Q ss_pred             HhhchhhHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhccch-----hhhHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 008137           20 IVWTTPYIMKLALSAGIGGLLFGYDTGVISGALLYIKEDFRDVE-----KKTWLQELIVSMAVAGAIFGAGFGGWINDRF   94 (576)
Q Consensus        20 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~-----~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~   94 (576)
                      .+.++++.+.+.++.+++.++.++|..+++..+|.+.++++.+.     ....+.|++.+++.+|..+|++++|+++||+
T Consensus         3 ~~~~~~y~~~i~~~a~lg~~~~Gyd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~   82 (491)
T 4gc0_A            3 TQYNSSYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRF   82 (491)
T ss_dssp             --CCHHHHHHHHHHHHHHHHHHHHHHHGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHT
T ss_pred             CCcChHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            45566788888888899999999999999999999999886432     1233458999999999999999999999999


Q ss_pred             CchHHHHHHHHHHHHHHHHHH------------------hcchHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhH
Q 008137           95 GRKISLLGADVLFFIGAIIMA------------------IAPQPWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGA  156 (576)
Q Consensus        95 Grr~~~~~~~~~~~i~~~~~~------------------~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~  156 (576)
                      |||++++++.+++.+++++++                  +++|+++++++|+++|+|.|+..+.+..+++|+.|+++|++
T Consensus        83 GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~  162 (491)
T 4gc0_A           83 GRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGK  162 (491)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHH
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhh
Confidence            999999999999999999999                  47899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCC-------chhHHHHHHhHHHHHHHHHHHhhccCChhHHhhcCCHHHHHHHHHH
Q 008137          157 LVSANGFLITGGQFLAYLINLAFTKAP-------GTWRWMLGVAGLPAVVQFGLMMMLPESPRWLYRQNKVDEARAILEK  229 (576)
Q Consensus       157 ~~~~~~~~~~~G~~l~~~l~~~l~~~~-------~~Wr~~f~v~~~~~~~~~~~~~~l~esp~~l~~~~~~~~~~~~l~~  229 (576)
                      ..++.+.+..+|.++++.++..+....       ..||+.+.+..++.++.++..+++||||+|+..+++.+++++.+++
T Consensus       163 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peSp~~L~~~~~~~~a~~~l~~  242 (491)
T 4gc0_A          163 LVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQEQAEGILRK  242 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGGGSCCCHHHHHHTTCHHHHHHHHHH
T ss_pred             hHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhhhcCCCChHHHHHcCchhHHHHhHHH
Confidence            999999999999999999887765432       2599999999999988888889999999999999999999988877


Q ss_pred             hCCchhhhHHHHHHHHHHHhhhhhhcccchhhHHHhhhhcccchhhhhhHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcC
Q 008137          230 IYPADQVEEEVNLLKQSVENEKAEEGLIGKDMISRLKGAFGNKIVRRGLYAGVTVQVAQQFVGINTVMYYSPTIVQFAGF  309 (576)
Q Consensus       230 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (576)
                      ....+...++..+..+....++...         .....+    .+++.........+.++.+.+.+.+|.+.+.+..+.
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (491)
T 4gc0_A          243 IMGNTLATQAVQEIKHSLDHGRKTG---------GRLLMF----GVGVIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGA  309 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHT---------THHHHS----CCTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSC
T ss_pred             hcCCchhHHHHHHHHHHHHhhhhhh---------hHHHHh----cccHHHHHHHHHHHHHHhhhhHHHhcchHHHHhcCC
Confidence            6554433333222222211111110         001111    123345566666777788888888999998888776


Q ss_pred             CchhHHHHHHHHHhHHHHHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccccccCCCCCCCC
Q 008137          310 ASKSTALALSLVTSGLNALGSIVSMAFVDKYGRRRLMIVSMFGLSSCLVALAVVFFQAAIHAPTVSQIESSHFGGNNTCP  389 (576)
Q Consensus       310 ~~~~~~~~~~~~~~~~~~ig~~~~g~l~dk~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  389 (576)
                       +............+..+++.++++++.||+|||+.++.+.....++++.+.......                      
T Consensus       310 -~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~----------------------  366 (491)
T 4gc0_A          310 -STDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQ----------------------  366 (491)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTT----------------------
T ss_pred             -CccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcc----------------------
Confidence             445555666777888899999999999999999999999888888877766554311                      


Q ss_pred             cccccCCCCcccccccccccccccCCCCCCCCCCcccccccccccccccccccccccCCCCcchhHHHHHHHHHHHHhcC
Q 008137          390 AYITDGNAKSWNCMDCLKAKCGFCAHKGNEYLPGACLIDEKSTDTLCSDEHRTYFISGCPSSFGWLAVVFLGAYIITYSP  469 (576)
Q Consensus       390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~  469 (576)
                                                                                   ...+..++.+.++..++..
T Consensus       367 -------------------------------------------------------------~~~~~~~~~~~~~~~~~~~  385 (491)
T 4gc0_A          367 -------------------------------------------------------------APGIVALLSMLFYVAAFAM  385 (491)
T ss_dssp             -------------------------------------------------------------CCHHHHHHHHHHHHHHHHT
T ss_pred             -------------------------------------------------------------cchHHHHHHHHHHHHHHHh
Confidence                                                                         1134556666677777788


Q ss_pred             CcccccchhccccccccccccchhHHHHHHHHHHHHHHHHHHHHHH------hhccchhhHHHHHHHHHHHHHHHhhccC
Q 008137          470 GMGTAPWIVNSEIYPLRYRGVGGGIAAVSNWTSNLIVSLTFLTLTE------ALGSAGTFLLFAGFSLLGLVAIYLLVPE  543 (576)
Q Consensus       470 ~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~g~~~~~~~~~~l~~------~~g~~~~~~~~~~~~~i~~~~~~~~~~~  543 (576)
                      +.+++.+.+.+|++|++.|++++|+.+..+++++++++.+++.+.+      ..+...+|++++++++++.++.++++||
T Consensus       386 ~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PE  465 (491)
T 4gc0_A          386 SWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPE  465 (491)
T ss_dssp             TTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecC
Confidence            8888889999999999999999999999999999999988876643      3455567889999999999999999999


Q ss_pred             CCCCCHHHHHHHHhCCCCc
Q 008137          544 TKGLAFEEVEKMLETGFKP  562 (576)
Q Consensus       544 ~~~~~~~~~~~~~~~~~~~  562 (576)
                      ||++++||+|+..+++.++
T Consensus       466 Tkg~tLeei~~~f~~~~~~  484 (491)
T 4gc0_A          466 TKGKTLEELEALWEPETKK  484 (491)
T ss_dssp             CTTCCHHHHGGGTC-----
T ss_pred             CCCCCHHHHHHHhCCCCcc
Confidence            9999999999887755443

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=100.00  E-value=3e-35  Score=313.00  Aligned_cols=375  Identities=11%  Similarity=0.009  Sum_probs=291.1

Q ss_pred             hhhHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHH
Q 008137           24 TPYIMKLALSAGIGGLLFGYDTGVISGALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGA  103 (576)
Q Consensus        24 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~  103 (576)
                      +++++..+..+++..++.+++....++.+|.+.++++.+..+.   |++.+++.++..++++++|+++||+|||++++++
T Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~---g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~   97 (438)
T 3o7q_A           21 SRSYIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQA---GLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITG   97 (438)
T ss_dssp             -CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHH---HHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHH
T ss_pred             hhHhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHH---HHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHH
Confidence            3445666677778888899999999999999999999999888   9999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHH---HhcchHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 008137          104 DVLFFIGAIIM---AIAPQPWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFT  180 (576)
Q Consensus       104 ~~~~~i~~~~~---~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~  180 (576)
                      .++++++.+++   +++++++.++++|+++|++.+...+...++++|++|+++|++++++.+.+.++|.++++++++.+.
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~  177 (438)
T 3o7q_A           98 LFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLI  177 (438)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred             HHHHHHHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999   889999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             -CCCch------------------------hHHHHHHhHHHHHHHHHHHhh--ccCChhHHhhcCCHHHHHHHHHHhCCc
Q 008137          181 -KAPGT------------------------WRWMLGVAGLPAVVQFGLMMM--LPESPRWLYRQNKVDEARAILEKIYPA  233 (576)
Q Consensus       181 -~~~~~------------------------Wr~~f~v~~~~~~~~~~~~~~--l~esp~~l~~~~~~~~~~~~l~~i~~~  233 (576)
                       +..+.                        ||+.|++.+++.++..+.+++  .||+++....+++              
T Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~--------------  243 (438)
T 3o7q_A          178 LSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDNHSDAK--------------  243 (438)
T ss_dssp             HTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTTCCCCSS--------------
T ss_pred             hcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCccccccccccc--------------
Confidence             65544                        999998888776666555443  4555431100000              


Q ss_pred             hhhhHHHHHHHHHHHhhhhhhcccchhhHHHhhhhcccchhhhhhHHHHHHHHHHHHHhhHHHHhhhHHH-HHhhcCCch
Q 008137          234 DQVEEEVNLLKQSVENEKAEEGLIGKDMISRLKGAFGNKIVRRGLYAGVTVQVAQQFVGINTVMYYSPTI-VQFAGFASK  312 (576)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  312 (576)
                                              .++...+.++.++++..+.     ..+..+...........+.|.| +++..+.+.
T Consensus       244 ------------------------~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  294 (438)
T 3o7q_A          244 ------------------------QGSFSASLSRLARIRHWRW-----AVLAQFCYVGAQTACWSYLIRYAVEEIPGMTA  294 (438)
T ss_dssp             ------------------------TTSHHHHHHHHTTCSHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCH
T ss_pred             ------------------------ccchhhhHHHHHhChHHHH-----HHHHHHHHHHHHHHHHHHHHHHhhhccCCcch
Confidence                                    0011134455666655443     2222333334455666788888 888755578


Q ss_pred             hHHHHHHHHHhHHHHHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccccccCCCCCCCCccc
Q 008137          313 STALALSLVTSGLNALGSIVSMAFVDKYGRRRLMIVSMFGLSSCLVALAVVFFQAAIHAPTVSQIESSHFGGNNTCPAYI  392 (576)
Q Consensus       313 ~~~~~~~~~~~~~~~ig~~~~g~l~dk~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  392 (576)
                      ..++.......++.+++.++.++++||++||+.+..+.++..++.+++.+...                           
T Consensus       295 ~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------  347 (438)
T 3o7q_A          295 GFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGG---------------------------  347 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCH---------------------------
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcCC---------------------------
Confidence            88888888889999999999999999999999998888777766655443311                           


Q ss_pred             ccCCCCcccccccccccccccCCCCCCCCCCcccccccccccccccccccccccCCCCcchhHHHHHHHHHHHHhcCCcc
Q 008137          393 TDGNAKSWNCMDCLKAKCGFCAHKGNEYLPGACLIDEKSTDTLCSDEHRTYFISGCPSSFGWLAVVFLGAYIITYSPGMG  472 (576)
Q Consensus       393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~  472 (576)
                                                                                   ...++.+.+.+++.+ ...
T Consensus       348 -------------------------------------------------------------~~~~~~~~~~g~~~~-~~~  365 (438)
T 3o7q_A          348 -------------------------------------------------------------HVGLIALTLCSAFMS-IQY  365 (438)
T ss_dssp             -------------------------------------------------------------HHHHHHHHHHHHHHT-THH
T ss_pred             -------------------------------------------------------------cHHHHHHHHHHHHHH-HHH
Confidence                                                                         122333333444433 345


Q ss_pred             cccchhccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHhhc-cchhhHHHHHHHHHHHH
Q 008137          473 TAPWIVNSEIYPLRYRGVGGGIAAVSNWTSNLIVSLTFLTLTEALG-SAGTFLLFAGFSLLGLV  535 (576)
Q Consensus       473 ~~~~~~~~e~~p~~~rg~~~g~~~~~~~~g~~~~~~~~~~l~~~~g-~~~~~~~~~~~~~i~~~  535 (576)
                      +..+.+..|.+|++ ++.+.++.. .+.+++.++|.+.|.+.+..| +...|++.+++.++..+
T Consensus       366 ~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~  427 (438)
T 3o7q_A          366 PTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFI  427 (438)
T ss_dssp             HHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence            66677878888876 888888877 678999999999999999998 88888776555544443

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=100.00  E-value=4.9e-37  Score=327.88  Aligned_cols=402  Identities=15%  Similarity=0.100  Sum_probs=303.7

Q ss_pred             hhhHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHH
Q 008137           24 TPYIMKLALSAGIGGLLFGYDTGVISGALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGA  103 (576)
Q Consensus        24 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~  103 (576)
                      ++.+++.+..++++.++.+++...+++.+|.+.+++ .+..+.   |++.+++.++..++++++|+++||+|||++++++
T Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~---g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~   98 (451)
T 1pw4_A           23 RRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDL---GFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAG   98 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCH---HHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHH---HHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHH
Confidence            445677888888899999999999999999999999 888888   9999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHh----cchHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 008137          104 DVLFFIGAIIMAI----APQPWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAF  179 (576)
Q Consensus       104 ~~~~~i~~~~~~~----~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l  179 (576)
                      .++++++.+++++    +++++.++++|+++|++.+...+...+++.|++|+++|++++++.+.+..+|.++++.+++.+
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l  178 (451)
T 1pw4_A           99 LILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLG  178 (451)
T ss_dssp             HHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999    999999999999999999999999999999999999999999999999999999999999987


Q ss_pred             cCCCchhHHHHHHhHHHHHHHHHH-HhhccCChhHHhhcCCHHHHHHHHHHhCCchhhhHHHHHHHHHHHhhhhhhcccc
Q 008137          180 TKAPGTWRWMLGVAGLPAVVQFGL-MMMLPESPRWLYRQNKVDEARAILEKIYPADQVEEEVNLLKQSVENEKAEEGLIG  258 (576)
Q Consensus       180 ~~~~~~Wr~~f~v~~~~~~~~~~~-~~~l~esp~~l~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (576)
                      .+..++||+.|++.+++.++..++ ++.+||+|+....+.+.+..+        ..  +.+.       + +..+++...
T Consensus       179 ~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~--~~~~-------~-~~~~~~~~~  240 (451)
T 1pw4_A          179 MAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKN--------DY--PDDY-------N-EKAEQELTA  240 (451)
T ss_dssp             HHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCC--------C-----------------------CC
T ss_pred             HHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhhcc--------cc--cccc-------h-hhhhccccc
Confidence            654434999999999888776554 567888876432221111000        00  0000       0 000000000


Q ss_pred             hhhHHHhhhhcccchhhhhhHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcCCchhHHHHHHHHHhHHHHHHHHHHHHhhc
Q 008137          259 KDMISRLKGAFGNKIVRRGLYAGVTVQVAQQFVGINTVMYYSPTIVQFAGFASKSTALALSLVTSGLNALGSIVSMAFVD  338 (576)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~d  338 (576)
                      ++  ...++.++++.     ++...+..+...........+.|.++++..+.+....+.+.....++.+++.++.+++.|
T Consensus       241 ~~--~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~  313 (451)
T 1pw4_A          241 KQ--IFMQYVLPNKL-----LWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSD  313 (451)
T ss_dssp             TH--HHHHHTSSCHH-----HHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cc--chHHHHHcCHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            00  11234444443     333444444455556677888899998855557788888888889999999999999999


Q ss_pred             cc--CChHHHHHHHHHHH-HHHHHHHHHHHHhhhcCCCccccccccCCCCCCCCcccccCCCCcccccccccccccccCC
Q 008137          339 KY--GRRRLMIVSMFGLS-SCLVALAVVFFQAAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAH  415 (576)
Q Consensus       339 k~--grr~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  415 (576)
                      |+  +||+.+..+..+.. ++++++...                                                    
T Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------------------------------  341 (451)
T 1pw4_A          314 KVFRGNRGATGVFFMTLVTIATIVYWMN----------------------------------------------------  341 (451)
T ss_dssp             HTSTTCHHHHHHHHHHHHHHHHHHTTSC----------------------------------------------------
T ss_pred             HHhcCCchhHHHHHHHHHHHHHHHHHHh----------------------------------------------------
Confidence            99  99988877666554 333322211                                                    


Q ss_pred             CCCCCCCCcccccccccccccccccccccccCCCCcchhHHHHHHHHHHHHhcCCcccccchhccccccccccccchhHH
Q 008137          416 KGNEYLPGACLIDEKSTDTLCSDEHRTYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEIYPLRYRGVGGGIA  495 (576)
Q Consensus       416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~~~g~~  495 (576)
                                                       +....+...+...+.+.+.. +..+....+..|.+|++.||++.|+.
T Consensus       342 ---------------------------------~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~  387 (451)
T 1pw4_A          342 ---------------------------------PAGNPTVDMICMIVIGFLIY-GPVMLIGLHALELAPKKAAGTAAGFT  387 (451)
T ss_dssp             ---------------------------------CTTCHHHHHHHHHHHHHHHT-HHHHHHHHHHHHTSCTTHHHHHHHHH
T ss_pred             ---------------------------------cccCHHHHHHHHHHHHHHHh-chHHHHHHHHHHHhchhhhhhHHHHH
Confidence                                             00012333333333333332 33345567889999999999999999


Q ss_pred             HHHHHH-HHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHhh
Q 008137          496 AVSNWT-SNLIVSLTFLTLTEALGSAGTFLLFAGFSLLGLVAIYLL  540 (576)
Q Consensus       496 ~~~~~~-g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~  540 (576)
                      +....+ |..++|.+.+.+.+..|+...|++.+++.+++.++.++.
T Consensus       388 ~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  433 (451)
T 1pw4_A          388 GLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVV  433 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHH
Confidence            999999 999999999999999999889999888888877766554

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.98  E-value=2.3e-30  Score=280.09  Aligned_cols=423  Identities=13%  Similarity=0.056  Sum_probs=267.6

Q ss_pred             HHHHHhhhhhhhhHHHHHHH-HHHh-----hccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhc-cCchHHHHHHHHHH
Q 008137           35 GIGGLLFGYDTGVISGALLY-IKED-----FRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDR-FGRKISLLGADVLF  107 (576)
Q Consensus        35 ~l~~~~~~~~~~~~~~~~~~-i~~~-----~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr-~Grr~~~~~~~~~~  107 (576)
                      .+..+...+......+.++. +.++     +|.+..+.   +++.+++.++..++++++|+++|| +|||+++.++.++.
T Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~---~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~   95 (491)
T 4aps_A           19 FMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATA---ASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLI   95 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHH
Confidence            33444445554444444444 4444     89888888   999999999999999999999999 89999999999999


Q ss_pred             HHHHHHHHhcchHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcch--hhHHHHHHHHHHHHHHHHHHHHHHHhcCCCch
Q 008137          108 FIGAIIMAIAPQPWVIILGRIFVGLGVGMASMTAPLYISEASPAKI--RGALVSANGFLITGGQFLAYLINLAFTKAPGT  185 (576)
Q Consensus       108 ~i~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~--R~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~  185 (576)
                      +++.++++++++++.++++|+++|++.+...+...++++|++|+++  |+.++++++.+.++|..++|.+++.+.+..+ 
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g-  174 (491)
T 4aps_A           96 MLGHIVLALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAG-  174 (491)
T ss_dssp             HHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC-
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhh-
Confidence            9999999999999999999999999999999999999999999988  7788888999999999999999999988776 


Q ss_pred             hHHHHHHhHHHHHHHHHHHhhc-cCCh----hHHhhcCCHHHHHHHHHH----------------hCCchhhhHHHHHHH
Q 008137          186 WRWMLGVAGLPAVVQFGLMMML-PESP----RWLYRQNKVDEARAILEK----------------IYPADQVEEEVNLLK  244 (576)
Q Consensus       186 Wr~~f~v~~~~~~~~~~~~~~l-~esp----~~l~~~~~~~~~~~~l~~----------------i~~~~~~~~~~~~~~  244 (576)
                      ||+.|++.++..++..+..++. ++..    +....+.+.++.++..+.                .....+.+.......
T Consensus       175 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (491)
T 4aps_A          175 YHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYINLLT  254 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTTHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCcccccccccCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhhhh
Confidence            9999999877766655554332 2211    101111122222221111                000000000000000


Q ss_pred             --HHHHhhhhhhcccchhhHHHhhhhcccchhhhhhHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcCCchhHHHHHHHHH
Q 008137          245 --QSVENEKAEEGLIGKDMISRLKGAFGNKIVRRGLYAGVTVQVAQQFVGINTVMYYSPTIVQFAGFASKSTALALSLVT  322 (576)
Q Consensus       245 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (576)
                        ........... ..++  .......++   +..............+........+.|.+.++....+....+......
T Consensus       255 ~~~~~~~~~~~~~-~~~~--~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  328 (491)
T 4aps_A          255 IVAIAIPVFYFAW-MISS--VKVTSTEHL---RVVSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLN  328 (491)
T ss_dssp             HHHHHHHHHHHHH-HC-----------------CTTHHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHH
T ss_pred             HHHHHHHHHHHHH-Hhhc--ccccHHHHH---HHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccc
Confidence              00000000000 0000  000000000   111112222223333344455566677777765444434555566667


Q ss_pred             hHHHHHHHHHHHHhhcccCChHHHH-----HHHHHHHHHHHHHHHHHHHhhhcCCCccccccccCCCCCCCCcccccCCC
Q 008137          323 SGLNALGSIVSMAFVDKYGRRRLMI-----VSMFGLSSCLVALAVVFFQAAIHAPTVSQIESSHFGGNNTCPAYITDGNA  397 (576)
Q Consensus       323 ~~~~~ig~~~~g~l~dk~grr~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  397 (576)
                      .+..+++.++.+++.||++||+...     .+..+..++++++..........                           
T Consensus       329 ~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------  381 (491)
T 4aps_A          329 PLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTS---------------------------  381 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCCC---------------------------
T ss_pred             hHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCC---------------------------
Confidence            7778888999999999999986544     56666666655555443211000                           


Q ss_pred             CcccccccccccccccCCCCCCCCCCcccccccccccccccccccccccCCCCcchhHHHHHHHHHHHHhcCCcccccch
Q 008137          398 KSWNCMDCLKAKCGFCAHKGNEYLPGACLIDEKSTDTLCSDEHRTYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAPWI  477 (576)
Q Consensus       398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  477 (576)
                                                                         +....+..++...+.+.+.. ...+..+.
T Consensus       382 ---------------------------------------------------~~~~~~~~~~~~~l~g~~~~-~~~~~~~~  409 (491)
T 4aps_A          382 ---------------------------------------------------GKVSPLWLVGSWALVILGEM-LISPVGLS  409 (491)
T ss_dssp             ---------------------------------------------------TTCCTHHHHHHHHHHHHHHH-TTTTHHHH
T ss_pred             ---------------------------------------------------CCccHHHHHHHHHHHHHHHH-HHhHHHHH
Confidence                                                               00011333344444444433 33456678


Q ss_pred             hccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHhhccCCCCC
Q 008137          478 VNSEIYPLRYRGVGGGIAAVSNWTSNLIVSLTFLTLTEALGSAGTFLLFAGFSLLGLVAIYLLVPETKGL  547 (576)
Q Consensus       478 ~~~e~~p~~~rg~~~g~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  547 (576)
                      +..|.+|++.||++.|+.+....+|..+++.+.+.+.+ .++...|.+.+++++++.++.+++.++.+++
T Consensus       410 ~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  478 (491)
T 4aps_A          410 VTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNA-KSEVAYFSYFGLGSVVLGIVLVFLSKRIQGL  478 (491)
T ss_dssp             HHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGG-SSTTHHHHHTHHHHHHHHHHHHHC-------
T ss_pred             HHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88999999999999999999999999999999887665 4666788888888888877777766655443

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.97  E-value=4e-31  Score=275.92  Aligned_cols=357  Identities=15%  Similarity=0.085  Sum_probs=271.1

Q ss_pred             HHHHHHHHhhhhhhhhHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHH
Q 008137           32 LSAGIGGLLFGYDTGVISGALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFIGA  111 (576)
Q Consensus        32 ~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~  111 (576)
                      ..+++..++.+++...+.+.+|.+.++++.+..+.   +++.+++.++..++++++|+++||+|||+++.++.++.+++.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~---g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~   79 (375)
T 2gfp_A            3 LMLVLLVAVGQMAQTIYIPAIADMARDLNVREGAV---QSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLAT   79 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTTSSSTTHHH---HHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhhhHHHHHHcCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHH
Confidence            45667778889999999999999999999998888   999999999999999999999999999999999999999999


Q ss_pred             HHHHhcchHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHH
Q 008137          112 IIMAIAPQPWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFTKAPGTWRWMLG  191 (576)
Q Consensus       112 ~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~Wr~~f~  191 (576)
                      ++.+++++++.+++.|+++|++.+...+...+++.|++|+++|++++++.+....+|..+++.+++.+.+..+ ||+.|+
T Consensus        80 ~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~-~~~~~~  158 (375)
T 2gfp_A           80 LVAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWN-WRACYL  158 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHH-HHHHHH
T ss_pred             HHHHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcc-HHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999999987665 999999


Q ss_pred             HhHHHHHHHHH-HHhhccCChhHHhhcCCHHHHHHHHHHhCCchhhhHHHHHHHHHHHhhhhhhcccchhhHHHhhhhcc
Q 008137          192 VAGLPAVVQFG-LMMMLPESPRWLYRQNKVDEARAILEKIYPADQVEEEVNLLKQSVENEKAEEGLIGKDMISRLKGAFG  270 (576)
Q Consensus       192 v~~~~~~~~~~-~~~~l~esp~~l~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (576)
                      +.+++.++..+ .++.+||+++...++++                                         ..++.++.++
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------------------~~~~~~~~~~  197 (375)
T 2gfp_A          159 FLLVLCAGVTFSMARWMPETRPVDAPRTR-----------------------------------------LLTSYKTLFG  197 (375)
T ss_dssp             HHHHHHHHHHCCCCCSSCCCSTTTCCCCC-----------------------------------------TTTCSTHHHH
T ss_pred             HHHHHHHHHHHHHHHHCcccCCCCccccc-----------------------------------------HHHHHHHHhc
Confidence            99888877766 35667887642111000                                         0022233333


Q ss_pred             cchhhhhhHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcCCchhHHHHHHHHHhHHHHHHHHHHHHhhcccCChHHHHHHH
Q 008137          271 NKIVRRGLYAGVTVQVAQQFVGINTVMYYSPTIVQFAGFASKSTALALSLVTSGLNALGSIVSMAFVDKYGRRRLMIVSM  350 (576)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dk~grr~~~~~~~  350 (576)
                      ++..     +...+..+...........+.|.++++..+.+....+.......++.+++.++.+++.||++++.  ..+.
T Consensus       198 ~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~--~~~~  270 (375)
T 2gfp_A          198 NSGF-----NCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLM--WQSV  270 (375)
T ss_dssp             HHHH-----HHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHHH--HHHH
T ss_pred             Ccch-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHH
Confidence            3332     22333334444556667778888887744447777888888888889999999999999988732  2222


Q ss_pred             HH-HHHHHHHHHHHHHHhhhcCCCccccccccCCCCCCCCcccccCCCCcccccccccccccccCCCCCCCCCCcccccc
Q 008137          351 FG-LSSCLVALAVVFFQAAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAHKGNEYLPGACLIDE  429 (576)
Q Consensus       351 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  429 (576)
                      .. ...+..++........                                                             
T Consensus       271 ~~~~~~~~~~~~~~~~~~~-------------------------------------------------------------  289 (375)
T 2gfp_A          271 ICCLLAGLLMWIPDWFGVM-------------------------------------------------------------  289 (375)
T ss_dssp             HHHHHTSSSSSHHHHHHHH-------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHhhhccc-------------------------------------------------------------
Confidence            22 2222221111111000                                                             


Q ss_pred             cccccccccccccccccCCCCcchhHHHHHHHHHHHHhcCCcccccchhccccccccccccchhHHHHHHHHHHHHHHHH
Q 008137          430 KSTDTLCSDEHRTYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEIYPLRYRGVGGGIAAVSNWTSNLIVSLT  509 (576)
Q Consensus       430 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~g~~~~~~~  509 (576)
                                            ..+..++...+.+++.+ ...+....+..|.+| +.||++.|+.+....+|..++|.+
T Consensus       290 ----------------------~~~~~~~~~~l~g~~~~-~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~  345 (375)
T 2gfp_A          290 ----------------------NVWTLLVPAALFFFGAG-MLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASL  345 (375)
T ss_dssp             ----------------------HHHHHHHHHHHHHHHHH-HTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTT
T ss_pred             ----------------------cHHHHHHHHHHHHHHHH-HhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHH
Confidence                                  01333334444444443 234566678889998 899999999999999999999999


Q ss_pred             HHHHHHhhccchhhHH
Q 008137          510 FLTLTEALGSAGTFLL  525 (576)
Q Consensus       510 ~~~l~~~~g~~~~~~~  525 (576)
                      .+.+.+..++...+.+
T Consensus       346 ~g~l~~~~~~~~~~~~  361 (375)
T 2gfp_A          346 SAMLPQTGQGSLGLLM  361 (375)
T ss_dssp             CTHHHHHHHHHHHHHH
T ss_pred             HHHHhcCCcccHHHHH
Confidence            9999887776655444

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.94  E-value=1.3e-27  Score=253.78  Aligned_cols=380  Identities=9%  Similarity=-0.000  Sum_probs=240.7

Q ss_pred             HhhhhhhhhHHHHHHHHH-HhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHH---HH
Q 008137           39 LLFGYDTGVISGALLYIK-EDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFIGAI---IM  114 (576)
Q Consensus        39 ~~~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~---~~  114 (576)
                      ++.........+.+|... +++|.+..+.   |++.+++.++..++++++|+++||+|||++++++..+++++..   ..
T Consensus        17 ~~~~~~~~~~~~~~~~~l~~~~g~s~~~~---g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~   93 (417)
T 2cfq_A           17 FFYFFIMGAYFPFFPIWLHDINHISKSDT---GIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIF   93 (417)
T ss_dssp             HHHHHHHHHHTTTHHHHHHTTTCCCTTTS---HHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHH
Confidence            334444455566677754 5689998888   9999999999999999999999999999999998887765322   12


Q ss_pred             HhcchHH-HHHHHHHHHHhhhhhhhhhHHHHHHhccCc--chhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHH
Q 008137          115 AIAPQPW-VIILGRIFVGLGVGMASMTAPLYISEASPA--KIRGALVSANGFLITGGQFLAYLINLAFTKAPGTWRWMLG  191 (576)
Q Consensus       115 ~~~~~~~-~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~--~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~Wr~~f~  191 (576)
                      ++++... .+...|++.|++.+...+.....+.++.++  ++|+...+.......+|..++|.+++++.+.  +||+.|+
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~--~~~~~f~  171 (417)
T 2cfq_A           94 IFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTI--NNQFVFW  171 (417)
T ss_dssp             THHHHHHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHHH--CSHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHh--chhHHHH
Confidence            2322221 234566676666665555445555555443  3557677888788889999999999988763  4999999


Q ss_pred             HhHHHHHHHHHHHhhccCChhHHhhcCCHHHHHHHHHHhCCchhhhHHHHHHHHHHHhhhhhhcccchhhHHHhhhhccc
Q 008137          192 VAGLPAVVQFGLMMMLPESPRWLYRQNKVDEARAILEKIYPADQVEEEVNLLKQSVENEKAEEGLIGKDMISRLKGAFGN  271 (576)
Q Consensus       192 v~~~~~~~~~~~~~~l~esp~~l~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (576)
                      +.+++.++..+.+++.+|+++...++.+.++                            .+.+    +...++.++.+++
T Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------~~~~----~~~~~~~~~~~~~  219 (417)
T 2cfq_A          172 LGSGCALILAVLLFFAKTDAPSSATVANAVG----------------------------ANHS----AFSLKLALELFRQ  219 (417)
T ss_dssp             TTTTTTTTHHHHSCSSCCCCSCSSCSSSSSS----------------------------SCCC----CCCHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHcCcccccccccccccc----------------------------cccc----cccHHHHHHHhcC
Confidence            8877765555554444443321000000000                            0000    0001233445555


Q ss_pred             chhhhhhHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcCC---chhHHHHHHHHHhHHHHHHHHHHHHhhcccCChHHHHH
Q 008137          272 KIVRRGLYAGVTVQVAQQFVGINTVMYYSPTIVQFAGFA---SKSTALALSLVTSGLNALGSIVSMAFVDKYGRRRLMIV  348 (576)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~ig~~~~g~l~dk~grr~~~~~  348 (576)
                      +..+...+     ..+.....+.....+.|.|+++....   +....+.......++.+++.++.++++||+|||+++..
T Consensus       220 ~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~  294 (417)
T 2cfq_A          220 PKLWFLSL-----YVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLL  294 (417)
T ss_dssp             HHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred             CchhhHHH-----HHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHH
Confidence            54433221     11111222333334466666554321   23334566666677788899999999999999998887


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhcCCCccccccccCCCCCCCCcccccCCCCcccccccccccccccCCCCCCCCCCccccc
Q 008137          349 SMFGLSSCLVALAVVFFQAAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAHKGNEYLPGACLID  428 (576)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  428 (576)
                      +..+.+++.+++....                                                                
T Consensus       295 ~~~~~~~~~~~~~~~~----------------------------------------------------------------  310 (417)
T 2cfq_A          295 AGTIMSVRIIGSSFAT----------------------------------------------------------------  310 (417)
T ss_dssp             HHHHHHHHHHHHTTCC----------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHhc----------------------------------------------------------------
Confidence            7766665544332110                                                                


Q ss_pred             ccccccccccccccccccCCCCcchhHHHHHHHHHHHHhcCCcccccchhccccccccccccchhHH-HHHHHHHHHHHH
Q 008137          429 EKSTDTLCSDEHRTYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEIYPLRYRGVGGGIA-AVSNWTSNLIVS  507 (576)
Q Consensus       429 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~~~g~~-~~~~~~g~~~~~  507 (576)
                                             ..+..++...+....+. ...+..+.+.+|.+|++.||++.++. +..+.+|++++|
T Consensus       311 -----------------------~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp  366 (417)
T 2cfq_A          311 -----------------------SALEVVILKTLHMFEVP-FLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMS  366 (417)
T ss_dssp             -----------------------SHHHHHHHTTHHHHHHH-HHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHT
T ss_pred             -----------------------cHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhh
Confidence                                   01222222222222221 11223457889999999999999994 888899999999


Q ss_pred             HHHHHHHHhhccchhhHHHHHHHHHHHHHHHhhccCCCCCC
Q 008137          508 LTFLTLTEALGSAGTFLLFAGFSLLGLVAIYLLVPETKGLA  548 (576)
Q Consensus       508 ~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  548 (576)
                      .+.|.+.+..|+...|.+.+++++++.++.+++.||+++.+
T Consensus       367 ~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~~~~  407 (417)
T 2cfq_A          367 VLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGPLS  407 (417)
T ss_dssp             HHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCCSCTTC
T ss_pred             hhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcCCCchH
Confidence            99999999888888888888888888877767677665544

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=99.94  E-value=1.7e-26  Score=251.90  Aligned_cols=167  Identities=19%  Similarity=0.223  Sum_probs=144.2

Q ss_pred             HHHHhhhhhhhhHHHHHHH-HHHhhc------cchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhcc-CchHHHHHHHHHH
Q 008137           36 IGGLLFGYDTGVISGALLY-IKEDFR------DVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRF-GRKISLLGADVLF  107 (576)
Q Consensus        36 l~~~~~~~~~~~~~~~~~~-i~~~~~------~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~-Grr~~~~~~~~~~  107 (576)
                      +..++..+......+.++. +.++++      .+..+.   +++.+++.++..++++++|+++||+ |||+++.++.+++
T Consensus        19 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~---g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~   95 (524)
T 2xut_A           19 ASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVA---KDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIY   95 (524)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTH---HHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence            3444444454444455554 567788      888888   9999999999999999999999999 9999999999999


Q ss_pred             HHHHHHHHhcc-hHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHH---HHHHHHHHHHHHHHHHHHhcCCC
Q 008137          108 FIGAIIMAIAP-QPWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSA---NGFLITGGQFLAYLINLAFTKAP  183 (576)
Q Consensus       108 ~i~~~~~~~~~-~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~---~~~~~~~G~~l~~~l~~~l~~~~  183 (576)
                      +++.+++++++ +++.+++.|++.|++.+...+...+++.|++|+++|+++.+.   ++...++|..+++.+++.+.+..
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~  175 (524)
T 2xut_A           96 CVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNF  175 (524)
T ss_dssp             HHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTS
T ss_pred             HHHHHHHHHhcccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            99999999999 999999999999999999999999999999999999876666   89999999999999999998777


Q ss_pred             chhHHHHHHhHHHHHHHHHHHhh
Q 008137          184 GTWRWMLGVAGLPAVVQFGLMMM  206 (576)
Q Consensus       184 ~~Wr~~f~v~~~~~~~~~~~~~~  206 (576)
                      + ||+.|++.+++.++..+.++.
T Consensus       176 g-~~~~f~~~~~~~~~~~~~~~~  197 (524)
T 2xut_A          176 G-AAVAFGIPGVLMFVATVFFWL  197 (524)
T ss_dssp             C-HHHHHHHHHHHHHHHHHHHHS
T ss_pred             c-HHHHHHHHHHHHHHHHHHHHH
Confidence            6 999999988887766555443

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.43  E-value=1.9e-12  Score=137.14  Aligned_cols=171  Identities=17%  Similarity=0.095  Sum_probs=144.6

Q ss_pred             HHHHHHHhhhhhhhhHHHHHHHHHHh-hccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhcc--CchHHHHHHHHHHH-
Q 008137           33 SAGIGGLLFGYDTGVISGALLYIKED-FRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRF--GRKISLLGADVLFF-  108 (576)
Q Consensus        33 ~~~l~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~--Grr~~~~~~~~~~~-  108 (576)
                      ...+..++.......+....|.+.++ ++.+..+.   +++.+...++..++.++.|++.||+  |||+.+.++.++.. 
T Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~  332 (451)
T 1pw4_A          256 YIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKS---SWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVT  332 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHH
Confidence            33444455555566667778887777 78888777   9999999999999999999999999  99999888887776 


Q ss_pred             HHHHHHHhc--chHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHH-HHHHHHHHHHHhcCCCch
Q 008137          109 IGAIIMAIA--PQPWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITG-GQFLAYLINLAFTKAPGT  185 (576)
Q Consensus       109 i~~~~~~~~--~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~-G~~l~~~l~~~l~~~~~~  185 (576)
                      ++.++..+.  .+.+.+.+..++.|++.+...+....++.|.+|+++|++++++.+....+ |..+++.+.+.+.+..+ 
T Consensus       333 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g-  411 (451)
T 1pw4_A          333 IATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFG-  411 (451)
T ss_dssp             HHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSC-
T ss_pred             HHHHHHHHhcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-
Confidence            666666666  37888888899999999999999999999999999999999999999999 99999999999998877 


Q ss_pred             hHHHHHHhHHHHHHHHHHHhhc
Q 008137          186 WRWMLGVAGLPAVVQFGLMMML  207 (576)
Q Consensus       186 Wr~~f~v~~~~~~~~~~~~~~l  207 (576)
                      |+..|++.+++.++..+..+++
T Consensus       412 ~~~~~~~~~~~~~~~~~~~~~~  433 (451)
T 1pw4_A          412 WDGGFMVMIGGSILAVILLIVV  433 (451)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999888887776665444

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.37  E-value=6.3e-12  Score=132.79  Aligned_cols=141  Identities=15%  Similarity=0.100  Sum_probs=122.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhhhhhhhhhHHHHHHhcc
Q 008137           70 ELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFIGAIIMAIAPQPWVIILGRIFVGLGVGMASMTAPLYISEAS  149 (576)
Q Consensus        70 g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~  149 (576)
                      ++..++..++..++.++.|++.||+|||+++..+.++.+++.++.++.++.+.+++..++.|++.+...+....++.|.+
T Consensus       262 g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  341 (417)
T 2cfq_A          262 GYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQF  341 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence            78888888899999999999999999999999999988888888888888888888888999988877788889999999


Q ss_pred             CcchhhHHHHH-HHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHhHHHHHHHHHH-HhhccCCh
Q 008137          150 PAKIRGALVSA-NGFLITGGQFLAYLINLAFTKAPGTWRWMLGVAGLPAVVQFGL-MMMLPESP  211 (576)
Q Consensus       150 ~~~~R~~~~~~-~~~~~~~G~~l~~~l~~~l~~~~~~Wr~~f~v~~~~~~~~~~~-~~~l~esp  211 (576)
                      |++.|+.+.++ ++....+|.+++|.+.+.+.+..+ ++..|.+.+++.++..+. ++..||.+
T Consensus       342 p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g-~~~~f~~~~~~~l~~~~~~~~~~~~~~  404 (417)
T 2cfq_A          342 EVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIG-FQGAYLVLGLVALGFTLISVFTLSGPG  404 (417)
T ss_dssp             CHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSH-HHHHHHHHHHHHHHHHHHHTTSSCCSC
T ss_pred             CHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcC-cHHHHHHHHHHHHHHHHHHHhhhcCCC
Confidence            99999999998 588888999999999999887655 899999888887777665 34456543

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.32  E-value=2.5e-11  Score=128.15  Aligned_cols=159  Identities=13%  Similarity=-0.048  Sum_probs=128.2

Q ss_pred             hhhhhhhHHHHHHHH-HHh-hccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHhcc
Q 008137           41 FGYDTGVISGALLYI-KED-FRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFIGAIIMAIAP  118 (576)
Q Consensus        41 ~~~~~~~~~~~~~~i-~~~-~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~  118 (576)
                      .......+....|.+ .++ ++.+..+.   +++.+...++..++.++.|++.||+|||+.+.++.++..++.++..+.+
T Consensus       270 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~  346 (438)
T 3o7q_A          270 YVGAQTACWSYLIRYAVEEIPGMTAGFA---ANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAG  346 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSTTCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHHHHhhhccCCcchhHH---HHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcC
Confidence            333344455556665 555 48888777   9999999999999999999999999999999999999999999999988


Q ss_pred             hHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHhHHHHH
Q 008137          119 QPWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFTKAPGTWRWMLGVAGLPAV  198 (576)
Q Consensus       119 ~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~Wr~~f~v~~~~~~  198 (576)
                      +.+.++.. ++.|++.+...+...++..|.+|++ |+.+.++.. ...+|..++|.+.+.+.+..++++..|++.++..+
T Consensus       347 ~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~  423 (438)
T 3o7q_A          347 GHVGLIAL-TLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFA  423 (438)
T ss_dssp             HHHHHHHH-HHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHH
T ss_pred             CcHHHHHH-HHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence            88765554 8999999999999999999999866 888888777 55689999999999998876558888887665554


Q ss_pred             HHHHHHh
Q 008137          199 VQFGLMM  205 (576)
Q Consensus       199 ~~~~~~~  205 (576)
                      +.++..+
T Consensus       424 ~~~~~~~  430 (438)
T 3o7q_A          424 VIFIFAR  430 (438)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHHH
Confidence            4444333

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.18  E-value=4.9e-11  Score=123.48  Aligned_cols=171  Identities=10%  Similarity=0.015  Sum_probs=131.1

Q ss_pred             HHHHHhhHHHHhhhHHHHHhhcCCchhHHHHHHHHHhHHHHHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHHHHHHHH
Q 008137          287 AQQFVGINTVMYYSPTIVQFAGFASKSTALALSLVTSGLNALGSIVSMAFVDKYGRRRLMIVSMFGLSSCLVALAVVFFQ  366 (576)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dk~grr~~~~~~~~~~~~~~~~~~~~~~~  366 (576)
                      +.............|.+.++.+. +..+.+.......++..++.++.|+++||+|||+.+..+.++..++.+++......
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~g~-s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~   88 (375)
T 2gfp_A           10 AVGQMAQTIYIPAIADMARDLNV-REGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSSL   88 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTSSS-TTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhhHHHHHHcCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhccH
Confidence            33444455556666777777666 67778888888999999999999999999999999999998888888777665321


Q ss_pred             hhhcCCCccccccccCCCCCCCCcccccCCCCcccccccccccccccCCCCCCCCCCccccccccccccccccccccccc
Q 008137          367 AAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAHKGNEYLPGACLIDEKSTDTLCSDEHRTYFIS  446 (576)
Q Consensus       367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  446 (576)
                                                                                                      
T Consensus        89 --------------------------------------------------------------------------------   88 (375)
T 2gfp_A           89 --------------------------------------------------------------------------------   88 (375)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCcchhHHHHHHHHHHHHhcCCcccccchhccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHH
Q 008137          447 GCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEIYPLRYRGVGGGIAAVSNWTSNLIVSLTFLTLTEALGSAGTFLLF  526 (576)
Q Consensus       447 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~  526 (576)
                             +..++...+.+.+.+ ...+....+..|.+|+++|++.+++.+....+|..++|.+.+.+.+..||+..|++.
T Consensus        89 -------~~l~~~~~l~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~  160 (375)
T 2gfp_A           89 -------TVLIAASAMQGMGTG-VGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFL  160 (375)
T ss_dssp             -------HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHH
T ss_pred             -------HHHHHHHHHHHHHHH-hhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHH
Confidence                   233333333333332 234556678899999999999999999999999999999999999888999999888


Q ss_pred             HHHHHHHHHHHHhhccCCCC
Q 008137          527 AGFSLLGLVAIYLLVPETKG  546 (576)
Q Consensus       527 ~~~~~i~~~~~~~~~~~~~~  546 (576)
                      +++.++..+..++..||++.
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~  180 (375)
T 2gfp_A          161 LVLCAGVTFSMARWMPETRP  180 (375)
T ss_dssp             HHHHHHHHCCCCCSSCCCST
T ss_pred             HHHHHHHHHHHHHHCcccCC
Confidence            88887777655666777654

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.18  E-value=1.7e-10  Score=124.01  Aligned_cols=170  Identities=16%  Similarity=0.046  Sum_probs=126.8

Q ss_pred             HHHHHHHhhHHHHhhhHHHHHhh-----cCCchhHHHHHHHHHhHHHHHHHHHHHHhhcc-cCChHHHHHHHHHHHHHHH
Q 008137          285 QVAQQFVGINTVMYYSPTIVQFA-----GFASKSTALALSLVTSGLNALGSIVSMAFVDK-YGRRRLMIVSMFGLSSCLV  358 (576)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dk-~grr~~~~~~~~~~~~~~~  358 (576)
                      ..+.....++....+.+.|+++.     .+.+..+.+.+.....++..++.++.|+++|| +|||+++..+.++..++.+
T Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~  100 (491)
T 4aps_A           21 TEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHI  100 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHH
Confidence            33334444556666677777764     45578888899999999999999999999999 8999999999888877776


Q ss_pred             HHHHHHHHhhhcCCCccccccccCCCCCCCCcccccCCCCcccccccccccccccCCCCCCCCCCccccccccccccccc
Q 008137          359 ALAVVFFQAAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAHKGNEYLPGACLIDEKSTDTLCSD  438 (576)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  438 (576)
                      ++....                                                                          
T Consensus       101 ~~~~~~--------------------------------------------------------------------------  106 (491)
T 4aps_A          101 VLALPF--------------------------------------------------------------------------  106 (491)
T ss_dssp             HHHSCC--------------------------------------------------------------------------
T ss_pred             HHHHhh--------------------------------------------------------------------------
Confidence            654320                                                                          


Q ss_pred             ccccccccCCCCcchhHHHHHHHHHHHHhcCCcccccchhccccccccc--cccchhHHHHHHHHHHHHHHHHHHHHHHh
Q 008137          439 EHRTYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEIYPLRY--RGVGGGIAAVSNWTSNLIVSLTFLTLTEA  516 (576)
Q Consensus       439 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~--rg~~~g~~~~~~~~g~~~~~~~~~~l~~~  516 (576)
                                   ..+..++..++.+.+.+ ...+...++.+|.+|++.  |+.+.++.+....+|..++|.+.+.+.+.
T Consensus       107 -------------~~~~~~~~~~l~g~~~~-~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~  172 (491)
T 4aps_A          107 -------------GASALFGSIILIIIGTG-FLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEA  172 (491)
T ss_dssp             -------------STTHHHHHHHHHHHHHH-HHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -------------hHHHHHHHHHHHHHHHH-hccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhh
Confidence                         01333334444443333 234566688899999988  77788888999999999999999999999


Q ss_pred             hccchhhHHHHHHHHHHHHHHHhhcc
Q 008137          517 LGSAGTFLLFAGFSLLGLVAIYLLVP  542 (576)
Q Consensus       517 ~g~~~~~~~~~~~~~i~~~~~~~~~~  542 (576)
                      .||+..|++.++..+++.++.++..+
T Consensus       173 ~g~~~~f~~~~~~~~~~~~~~~~~~~  198 (491)
T 4aps_A          173 AGYHVAFSLAAIGMFIGLLVYYFGGK  198 (491)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhCc
Confidence            99999999988877777666554433

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.14  E-value=1.2e-09  Score=117.24  Aligned_cols=174  Identities=13%  Similarity=0.001  Sum_probs=122.3

Q ss_pred             HHHHHhhhhhhhhHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHH
Q 008137           35 GIGGLLFGYDTGVISGALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFIGAIIM  114 (576)
Q Consensus        35 ~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~  114 (576)
                      ....+........+....|.+.+..+.+....   ........+...++.++.+++.||+|||+.++.+.....++.+..
T Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l  359 (491)
T 4gc0_A          283 MLSIFQQFVGINVVLYYAPEVFKTLGASTDIA---LLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSL  359 (491)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhhhHHHhcchHHHHhcCCCccch---hhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHH
Confidence            33334444455556666777888887776666   666677788888999999999999999999999988888777665


Q ss_pred             Hhc-----chHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCC-----c
Q 008137          115 AIA-----PQPWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFTKAP-----G  184 (576)
Q Consensus       115 ~~~-----~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~~-----~  184 (576)
                      +..     ++...+...-+..+....+..+....+.+|.+|.+.|+.++++......+|.++++.+...+.+..     .
T Consensus       360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~  439 (491)
T 4gc0_A          360 GTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHF  439 (491)
T ss_dssp             HHHHHTTCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHH
T ss_pred             HHHHhcccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            542     122222222222222222345677889999999999999999999999999988887766654321     0


Q ss_pred             hhHHHHHHhHHHHHHHHHH-HhhccCCh
Q 008137          185 TWRWMLGVAGLPAVVQFGL-MMMLPESP  211 (576)
Q Consensus       185 ~Wr~~f~v~~~~~~~~~~~-~~~l~esp  211 (576)
                      ++.+.|++.++++++..+. ++++||+.
T Consensus       440 ~~~~~~~i~~~~~~~~~i~~~~~~PETk  467 (491)
T 4gc0_A          440 HNGFSYWIYGCMGVLAALFMWKFVPETK  467 (491)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHHCCCCT
T ss_pred             hhhHHHHHHHHHHHHHHHHHHheecCCC
Confidence            2556788888877776665 67899984

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=99.13  E-value=3.2e-10  Score=122.94  Aligned_cols=169  Identities=10%  Similarity=-0.045  Sum_probs=123.9

Q ss_pred             HHHHHhhHHHHhhhHHHHHhhcC------CchhHHHHHHHHHhHHHHHHHHHHHHhhccc-CChHHHHHHHHHHHHHHHH
Q 008137          287 AQQFVGINTVMYYSPTIVQFAGF------ASKSTALALSLVTSGLNALGSIVSMAFVDKY-GRRRLMIVSMFGLSSCLVA  359 (576)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~ig~~~~g~l~dk~-grr~~~~~~~~~~~~~~~~  359 (576)
                      +.....++....+.+.++++..+      .+..+.+.+.....++.+++.++.|+++||+ |||+++..+.++..++.++
T Consensus        22 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~  101 (524)
T 2xut_A           22 ACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAF  101 (524)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence            33344455566667777765444      4777888888888999999999999999999 9999999888888777766


Q ss_pred             HHHHHHHhhhcCCCccccccccCCCCCCCCcccccCCCCcccccccccccccccCCCCCCCCCCcccccccccccccccc
Q 008137          360 LAVVFFQAAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAHKGNEYLPGACLIDEKSTDTLCSDE  439 (576)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  439 (576)
                      +.+..                                                                           
T Consensus       102 ~~~~~---------------------------------------------------------------------------  106 (524)
T 2xut_A          102 LAIFE---------------------------------------------------------------------------  106 (524)
T ss_dssp             HHHTS---------------------------------------------------------------------------
T ss_pred             HHHhc---------------------------------------------------------------------------
Confidence            55431                                                                           


Q ss_pred             cccccccCCCCcchhHHHHHHHHHHHHhcCCcccccchhccccccccccccchhH---HHHHHHHHHHHHHHHHHHHHHh
Q 008137          440 HRTYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEIYPLRYRGVGGGI---AAVSNWTSNLIVSLTFLTLTEA  516 (576)
Q Consensus       440 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~~~g~---~~~~~~~g~~~~~~~~~~l~~~  516 (576)
                                 ...+..++..++.+.+.+ ...+...++..|.+|++.|+...+.   .+....+|..++|.+.+.+.+.
T Consensus       107 -----------~~~~~~~~~~~l~g~~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~  174 (524)
T 2xut_A          107 -----------HSVQGFYTGLFLIALGSG-GIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKN  174 (524)
T ss_dssp             -----------SCHHHHHHHHHHHHHHHH-TTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHT
T ss_pred             -----------ccHHHHHHHHHHHHHhcc-ccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence                       001333444444444433 3445666888999999999877666   8888999999999999999998


Q ss_pred             hccchhhHHHHHHHHHHHHHHHhhcc
Q 008137          517 LGSAGTFLLFAGFSLLGLVAIYLLVP  542 (576)
Q Consensus       517 ~g~~~~~~~~~~~~~i~~~~~~~~~~  542 (576)
                      .||+..|++.+++.+++.++.++..+
T Consensus       175 ~g~~~~f~~~~~~~~~~~~~~~~~~~  200 (524)
T 2xut_A          175 FGAAVAFGIPGVLMFVATVFFWLGRK  200 (524)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHSSSS
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            89999999888887776665544333

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	576
d1pw4a_	447	f.38.1.1 (A:) Glycerol-3-phosphate transporter {Es	3e-14
d1pw4a_	447	f.38.1.1 (A:) Glycerol-3-phosphate transporter {Es	3e-04
d1pw4a_	447	f.38.1.1 (A:) Glycerol-3-phosphate transporter {Es	0.003
d1pv7a_	417	f.38.1.2 (A:) Lactose permease {Escherichia coli [	4e-06

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Length = 447

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

 Score = 72.8 bits (177), Expect = 3e-14
 Identities = 46/350 (13%), Positives = 97/350 (27%), Gaps = 32/350 (9%)

Query: 29  KLALSAGIGGLLFGYDTGVISGALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGG 88
           ++ L    G   +       + A+ Y+ E         +     +S       F     G
Sbjct: 25  QIFLGIFFGYAAYYLVRKNFALAMPYLVEQGFSRGDLGF----ALSGISIAYGFSKFIMG 80

Query: 89  WINDRFGRKISLLGADVLFFIGAIIMAIAPQP----WVIILGRIFVGLGVGMASMTAPLY 144
            ++DR   ++ L    +L     + M   P       V+ +     G   GM        
Sbjct: 81  SVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRT 140

Query: 145 ISEASPAKIRGALVSANGFLITGGQFLAYLINLAFTKAPGTWRWMLGVAGLPAVVQFGLM 204
           +      K RG +VS        G  +  L+ L        W   L +    A++     
Sbjct: 141 MVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFA 200

Query: 205 MMLPESPRWLYRQNKVDEARAILEKIYPADQVEEEVNLLKQSVENEKAEEGLIGKDMISR 264
             +            ++E +      Y     +E                          
Sbjct: 201 FAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQE------------------------LT 236

Query: 265 LKGAFGNKIVRRGLYAGVTVQVAQQFVGINTVMYYSPTIVQFAGFASKSTALALSLVTSG 324
            K  F   ++   L   + +     ++    ++ +SPT ++     +   +     +   
Sbjct: 237 AKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEY 296

Query: 325 LNALGSIVSMAFVDKYGRRRLMIVSMFGLSSCLVALAVVFFQAAIHAPTV 374
               G+++     DK  R       +F ++   +A  V +   A +    
Sbjct: 297 AGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVD 346

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Length = 447

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

 Score = 40.8 bits (94), Expect = 3e-04
 Identities = 14/114 (12%), Positives = 38/114 (33%), Gaps = 1/114 (0%)

Query: 444 FISGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEIYPLRYRGVGGGIA-AVSNWTS 502
            +     +      +     I     G      +   E+ P +  G   G          
Sbjct: 333 IVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGG 392

Query: 503 NLIVSLTFLTLTEALGSAGTFLLFAGFSLLGLVAIYLLVPETKGLAFEEVEKML 556
           ++  S       +  G  G F++  G S+L ++ + +++   K    + +++++
Sbjct: 393 SVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEKRRHEQLLQELV 446

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Length = 447

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

 Score = 38.1 bits (87), Expect = 0.003
 Identities = 27/152 (17%), Positives = 46/152 (30%), Gaps = 6/152 (3%)

Query: 67  WLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFIGAIIMAI-----APQPW 121
                   +     I G    GW++D+  R            +  I   +     A  P 
Sbjct: 285 DKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPT 344

Query: 122 VIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVS-ANGFLITGGQFLAYLINLAFT 180
           V ++  I +G  +    M   L+  E +P K  G        F   GG   A  I     
Sbjct: 345 VDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTV 404

Query: 181 KAPGTWRWMLGVAGLPAVVQFGLMMMLPESPR 212
              G     + + G   +    L++++    R
Sbjct: 405 DFFGWDGGFMVMIGGSILAVILLIVVMIGEKR 436

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} Length = 417

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

 Score = 46.7 bits (109), Expect = 4e-06
 Identities = 16/167 (9%), Positives = 40/167 (23%), Gaps = 5/167 (2%)

Query: 71  LIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFIGAIIMAIAPQPWVIILGRIFV 130
           +I +     ++      G ++D+ G +  LL       +      I     ++    +  
Sbjct: 47  IIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVG 106

Query: 131 GLGVGMAS-----MTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAFTKAPGT 185
            +  G+         AP   +       R         +     +      +        
Sbjct: 107 SIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTINN 166

Query: 186 WRWMLGVAGLPAVVQFGLMMMLPESPRWLYRQNKVDEARAILEKIYP 232
                  +G   ++   L     ++P      N V    +       
Sbjct: 167 QFVFWLGSGCALILAVLLFFAKTDAPSSATVANAVGANHSAFSLKLA 213

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	576
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	100.0
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.95
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.49
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.21

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=3.3e-37  Score=325.04  Aligned_cols=407  Identities=14%  Similarity=0.097  Sum_probs=296.2

Q ss_pred             hhhHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHH
Q 008137           24 TPYIMKLALSAGIGGLLFGYDTGVISGALLYIKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGA  103 (576)
Q Consensus        24 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~  103 (576)
                      ++++|.++..++++.+..++++..++.+.|.+. |+|.+..+.   |++.+++.+++.++++++|+++||+|||+++.++
T Consensus        20 ~~~~w~i~~~~~~~~~~~~~~~~~~~~~~p~~~-~~g~s~~~~---g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~   95 (447)
T d1pw4a_          20 RRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLV-EQGFSRGDL---GFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAG   95 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTT-SSTTCSSCH---HHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCcCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHH
Confidence            456888888889999999999999999988775 689999998   9999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcc----hHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 008137          104 DVLFFIGAIIMAIAP----QPWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITGGQFLAYLINLAF  179 (576)
Q Consensus       104 ~~~~~i~~~~~~~~~----~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~G~~l~~~l~~~l  179 (576)
                      .++.+++.+++++++    +++.+++.|++.|++.|...+....+++|++|+++|++++++.+.+..+|..+++.+++.+
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~  175 (447)
T d1pw4a_          96 LILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLG  175 (447)
T ss_dssp             HHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHH
T ss_pred             HHHHHHHHhhccccchhhhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhH
Confidence            999999999998874    7889999999999999999999999999999999999999999999999999999998887


Q ss_pred             cCCCchhHHHHHHhHHHHHHHHHH-HhhccCChhHHhhcCCHHHHHHHHHHhCCchhhhHHHHHHHHHHHhhhhhhcccc
Q 008137          180 TKAPGTWRWMLGVAGLPAVVQFGL-MMMLPESPRWLYRQNKVDEARAILEKIYPADQVEEEVNLLKQSVENEKAEEGLIG  258 (576)
Q Consensus       180 ~~~~~~Wr~~f~v~~~~~~~~~~~-~~~l~esp~~l~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (576)
                      ....++||+.|++.+++.++..+. +++++|.|+........+...+          ..++.   .+     ..+++.. 
T Consensus       176 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~---~~-----~~~~~~~-  236 (447)
T d1pw4a_         176 MAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKND----------YPDDY---NE-----KAEQELT-  236 (447)
T ss_dssp             HHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCCC-------------------------------C-
T ss_pred             hhhhhcccccchhhhhhHHHHHHHHHHhcccchhhcccchhhhhhhh----------cccch---hh-----ccccccc-
Confidence            765556999999988887776665 4556666543222111110000          00000   00     0000000 


Q ss_pred             hhhHHHhhhhcccchhhhhhHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcCCchhHHHHHHHHHhHHHHHHHHHHHHhhc
Q 008137          259 KDMISRLKGAFGNKIVRRGLYAGVTVQVAQQFVGINTVMYYSPTIVQFAGFASKSTALALSLVTSGLNALGSIVSMAFVD  338 (576)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~d  338 (576)
                       ......+..++++.     ++......+...........+.|.++++....+....+.......+..+++.++.|++.|
T Consensus       237 -~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  310 (447)
T d1pw4a_         237 -AKQIFMQYVLPNKL-----LWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSD  310 (447)
T ss_dssp             -CTHHHHHHTSSCHH-----HHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -hhhHHHHHHHcCch-----HHHHHHHhhhhhhhhhcchhhhhhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhh
Confidence             00022233333333     333444444445556677778888888877778888888888999999999999999999


Q ss_pred             ccCChHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccccccCCCCCCCCcccccCCCCcccccccccccccccCCCCC
Q 008137          339 KYGRRRLMIVSMFGLSSCLVALAVVFFQAAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAHKGN  418 (576)
Q Consensus       339 k~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  418 (576)
                      |++|++..........+..+........                                                    
T Consensus       311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------------------------------  338 (447)
T d1pw4a_         311 KVFRGNRGATGVFFMTLVTIATIVYWMN----------------------------------------------------  338 (447)
T ss_dssp             HTSTTCHHHHHHHHHHHHHHHHHHTTSC----------------------------------------------------
T ss_pred             hccccccccccchhHHHHHHHHHHHHhc----------------------------------------------------
Confidence            9998765544443333332222221100                                                    


Q ss_pred             CCCCCcccccccccccccccccccccccCCCCcchhHHHHHHHHHHHHhcCCcccccchhccccccccccccchhHHHHH
Q 008137          419 EYLPGACLIDEKSTDTLCSDEHRTYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEIYPLRYRGVGGGIAAVS  498 (576)
Q Consensus       419 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~~~g~~~~~  498 (576)
                                                    +....+..++..++.+++. .+..+....+..|.+|++.||++.|+.+..
T Consensus       339 ------------------------------~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~  387 (447)
T d1pw4a_         339 ------------------------------PAGNPTVDMICMIVIGFLI-YGPVMLIGLHALELAPKKAAGTAAGFTGLF  387 (447)
T ss_dssp             ------------------------------CTTCHHHHHHHHHHHHHHH-THHHHHHHHHHHHTSCTTHHHHHHHHHHHH
T ss_pred             ------------------------------ccccHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHcCHHHHHHHHHHHHHH
Confidence                                          1111233333333333332 234455667889999999999999999988


Q ss_pred             HHHH-HHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHhhcc
Q 008137          499 NWTS-NLIVSLTFLTLTEALGSAGTFLLFAGFSLLGLVAIYLLVP  542 (576)
Q Consensus       499 ~~~g-~~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~  542 (576)
                      ++++ .+++|.+.|.+.+..|+...|++.+++++++.++.+++.+
T Consensus       388 ~~~~g~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  432 (447)
T d1pw4a_         388 GYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMI  432 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8875 5668899999999999998998888888887776665543

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.95  E-value=6.1e-27  Score=240.76  Aligned_cols=387  Identities=10%  Similarity=0.017  Sum_probs=254.1

Q ss_pred             HHHHHHhhhhhhhhHHHHHHH-HHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHH
Q 008137           34 AGIGGLLFGYDTGVISGALLY-IKEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFIGAI  112 (576)
Q Consensus        34 ~~l~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~  112 (576)
                      +++..++..+......+.+|. +.+++|.+..+.   |++.+++.++..++++++|+++||+|||++++++..+..++..
T Consensus        12 l~~~~f~~~~~~~~~~~~l~~~l~~~~g~s~~~~---g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~   88 (417)
T d1pv7a_          12 FGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDT---GIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFA   88 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH---HHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHHHHHHHHHHTHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHH
Confidence            344556666777778888887 567789999988   9999999999999999999999999999999999999999999


Q ss_pred             HHHhcchHHHH----HHHHHHHHhhhhhhhhhHHHHHHhccCc--chhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchh
Q 008137          113 IMAIAPQPWVI----ILGRIFVGLGVGMASMTAPLYISEASPA--KIRGALVSANGFLITGGQFLAYLINLAFTKAPGTW  186 (576)
Q Consensus       113 ~~~~~~~~~~l----~~~R~l~G~~~g~~~~~~~~~i~e~~~~--~~R~~~~~~~~~~~~~G~~l~~~l~~~l~~~~~~W  186 (576)
                      +.++..+....    ++.+.+.+.+.+...........+..++  +++.+..+........|..+++.+++.+.+.  +|
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~  166 (417)
T d1pv7a_          89 PFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTI--NN  166 (417)
T ss_dssp             HHHHHTHHHHHHTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHHH--CH
T ss_pred             HHHHhhhhhhHHHHHHHHHHHhhhcccccccchhhcccccccchhhhhHHHHHHHhhhhccccccccccccccccc--cc
Confidence            88887766554    3455555555555555555444444433  3345567778888888999999999988765  35


Q ss_pred             HHHHHHhHHHH-HHHHHHHhhccCChhHHhhcCCHHHHHHHHHHhCCchhhhHHHHHHHHHHHhhhhhhcccchhhHHHh
Q 008137          187 RWMLGVAGLPA-VVQFGLMMMLPESPRWLYRQNKVDEARAILEKIYPADQVEEEVNLLKQSVENEKAEEGLIGKDMISRL  265 (576)
Q Consensus       187 r~~f~v~~~~~-~~~~~~~~~l~esp~~l~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (576)
                      ++.+....... +...+.++..+|+++....+   ++.+                           ...   .+......
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~---------------------------~~~---~~~~~~~~  213 (417)
T d1pv7a_         167 QFVFWLGSGCALILAVLLFFAKTDAPSSATVA---NAVG---------------------------ANH---SAFSLKLA  213 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSSCCCSCSSSCSS---HHHH---------------------------SCC---CCCCHHHH
T ss_pred             cccccchhhHHHHHHHHHHHHhcccccchhhh---hhhh---------------------------hhc---cccccccc
Confidence            55555544444 44444466667665421111   0000                           000   00000112


Q ss_pred             hhhcccchhhhhhHHHHHHHHHHHHHhhHHHHhhhHHHHHhh---cCCchhHHHHHHHHHhHHHHHHHHHHHHhhcccCC
Q 008137          266 KGAFGNKIVRRGLYAGVTVQVAQQFVGINTVMYYSPTIVQFA---GFASKSTALALSLVTSGLNALGSIVSMAFVDKYGR  342 (576)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ig~~~~g~l~dk~gr  342 (576)
                      .+..+.+..+......... ...    ........+.+....   ...+....+.......++..++..+.+++.||.++
T Consensus       214 ~~~~~~~~~~~~~~~~~~~-~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~  288 (417)
T d1pv7a_         214 LELFRQPKLWFLSLYVIGV-SCT----YDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGG  288 (417)
T ss_dssp             HHHTTSSHHHHHHHHHHHH-HHH----HHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCH
T ss_pred             ccccccccccchhhhhHHH-HHH----HHhhhccccccccccccccccchhhhcccccccccccccchhhhhhhhccccc
Confidence            2222222222211111111 111    111112222222211   11234455566677777888999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccccccCCCCCCCCcccccCCCCcccccccccccccccCCCCCCCCC
Q 008137          343 RRLMIVSMFGLSSCLVALAVVFFQAAIHAPTVSQIESSHFGGNNTCPAYITDGNAKSWNCMDCLKAKCGFCAHKGNEYLP  422 (576)
Q Consensus       343 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  422 (576)
                      |+.+..+..+..++.+++....                                                          
T Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~----------------------------------------------------------  310 (417)
T d1pv7a_         289 KNALLLAGTIMSVRIIGSSFAT----------------------------------------------------------  310 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCC----------------------------------------------------------
T ss_pred             ccchhhhHHHHHHhhhcccccc----------------------------------------------------------
Confidence            9999888887777766554321                                                          


Q ss_pred             CcccccccccccccccccccccccCCCCcchhHHHHHHHHHHHHhcCCcccccchhccccccccccccchhHH-HHHHHH
Q 008137          423 GACLIDEKSTDTLCSDEHRTYFISGCPSSFGWLAVVFLGAYIITYSPGMGTAPWIVNSEIYPLRYRGVGGGIA-AVSNWT  501 (576)
Q Consensus       423 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~~~g~~-~~~~~~  501 (576)
                                                   ..+..++...+.+.+.+ ...+....+..|.+|++.|+++.|+. +....+
T Consensus       311 -----------------------------~~~~~~~~~~l~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  360 (417)
T d1pv7a_         311 -----------------------------SALEVVILKTLHMFEVP-FLLVGCFKYITSQFEVRFSATIYLVCFCFFKQL  360 (417)
T ss_dssp             -----------------------------CHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHSCGGGHHHHHHHHHTTTHHH
T ss_pred             -----------------------------ccchhhHHHHHHHHHHH-HHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHH
Confidence                                         12333444444444443 23455667889999999999999985 456779


Q ss_pred             HHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHhhccCCCCCCHHH
Q 008137          502 SNLIVSLTFLTLTEALGSAGTFLLFAGFSLLGLVAIYLLVPETKGLAFEE  551 (576)
Q Consensus       502 g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  551 (576)
                      |..++|.+.|.+.|..|++.+|++.++++++..++.++++++++..+.++
T Consensus       361 g~~i~~~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~r  410 (417)
T d1pv7a_         361 AMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGPLSLLR  410 (417)
T ss_dssp             HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHSCCSSCTTHHH
T ss_pred             HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHhhcCCCccchhH
Confidence            99999999999999999999999999999988888888888777666543

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.49  E-value=1.2e-13  Score=140.27  Aligned_cols=140  Identities=15%  Similarity=0.100  Sum_probs=126.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhhhhhhhhhHHHHHHhc
Q 008137           69 QELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFIGAIIMAIAPQPWVIILGRIFVGLGVGMASMTAPLYISEA  148 (576)
Q Consensus        69 ~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~  148 (576)
                      .+...+...++..++..+.+++.||+|+|+.+.++.++.+++.++.++.++.+.+++..++.|++.+...+...+++.|.
T Consensus       261 ~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~  340 (417)
T d1pv7a_         261 FGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQ  340 (417)
T ss_dssp             HHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            37888889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCcchhhHHHHHH-HHHHHHHHHHHHHHHHHhcCCCchhHHHHHHhHHHHHHHHHH-HhhccC
Q 008137          149 SPAKIRGALVSAN-GFLITGGQFLAYLINLAFTKAPGTWRWMLGVAGLPAVVQFGL-MMMLPE  209 (576)
Q Consensus       149 ~~~~~R~~~~~~~-~~~~~~G~~l~~~l~~~l~~~~~~Wr~~f~v~~~~~~~~~~~-~~~l~e  209 (576)
                      +|+++|+++.++. +....+|..+++.+.|++.+..+ |++.|++.+++.++..++ .+.+++
T Consensus       341 ~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~l~~  402 (417)
T d1pv7a_         341 FEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIG-FQGAYLVLGLVALGFTLISVFTLSG  402 (417)
T ss_dssp             SCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred             CCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHHhhcC
Confidence            9999999999975 56778999999999999998877 999999988887776665 444443

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.21  E-value=1.2e-10  Score=120.01  Aligned_cols=164  Identities=18%  Similarity=0.084  Sum_probs=121.9

Q ss_pred             HHhhhhhhhhHHHHHHHH-HHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHH---HHHH
Q 008137           38 GLLFGYDTGVISGALLYI-KEDFRDVEKKTWLQELIVSMAVAGAIFGAGFGGWINDRFGRKISLLGADVLFFI---GAII  113 (576)
Q Consensus        38 ~~~~~~~~~~~~~~~~~i-~~~~~~~~~~~~~~g~i~s~~~~~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i---~~~~  113 (576)
                      .++............|.+ .+.++.+..+.   ++..+...++..++.++.|++.||++||+..........+   +.++
T Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  334 (447)
T d1pw4a_         258 NVFVYLLRYGILDWSPTYLKEVKHFALDKS---SWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIV  334 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHBTTBSCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhhhhcchhhhhhhcccccccccchh---hhhhhcchhhhhhhhhhhhhhhhhccccccccccchhHHHHHHHHHH
Confidence            333333334444445554 44567777777   8999999999999999999999999987544333333222   2222


Q ss_pred             HHh--cchHHHHHHHHHHHHhhhhhhhhhHHHHHHhccCcchhhHHHHHHHHHHHH-HHHHHHHHHHHhcCCCchhHHHH
Q 008137          114 MAI--APQPWVIILGRIFVGLGVGMASMTAPLYISEASPAKIRGALVSANGFLITG-GQFLAYLINLAFTKAPGTWRWML  190 (576)
Q Consensus       114 ~~~--~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~~-G~~l~~~l~~~l~~~~~~Wr~~f  190 (576)
                      ...  ..+.+...+.-++.|++.++..+....+..|.+|++.|+.+.|+.+....+ |.++++.+.+.+.+..+ |+..|
T Consensus       335 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~g-~~~~~  413 (447)
T d1pw4a_         335 YWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFG-WDGGF  413 (447)
T ss_dssp             TTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSC-SHHHH
T ss_pred             HHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-hHHHH
Confidence            222  346788888889999999999999999999999999999999999887766 66778999999988887 99999


Q ss_pred             HHhHHHHHHHHHHHh
Q 008137          191 GVAGLPAVVQFGLMM  205 (576)
Q Consensus       191 ~v~~~~~~~~~~~~~  205 (576)
                      ++.+...++..++..
T Consensus       414 ~~~~~~~~~~~~~~~  428 (447)
T d1pw4a_         414 MVMIGGSILAVILLI  428 (447)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            888777766655543