Citrus Sinensis ID: 008149

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570------
Protein Sequence
MVQPKEEPNVMDEGLHIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQISENFEKETDDAPHDNDGTNEDKSDETLYGTMEITLQLLEMGFSENQVSLAIEKFGSKTPISELADKIFSGQIFLDTPRSRSYDTVKVKTEYCSPDVVSQSRKMNTSETSRGKRPKEEYFDDFSNSTSQFQHVDFQENRKGKRPKQESLDDSSSFLDSSWEEKVKPNSSRYGMQQAFNSNPCRSINKVVAQPPYFFYGNVVDVSIDCWVKMSHFLYSLEPEFVNSQYFSALSRREGYLHNLPTTNRFHIPPEPPMTIQDAIPHTKKWWPSWDTRKHLSCINSGTSGISQLCERFEKLLRDSRGVLSSQQQRDILHRSEKLNLVWVGAYKLGPVDPEHIELILGYPSNHTQAAGNSLTARLESLRHCFQTDTLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDFVICQNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVRSMKR
Secondary Structure (PSIPRED)
cccccccccccccccHHHHHHHHHcccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHccccHHHHHHHHHHHcccccHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEccccccccHHHHHHHHHHccccccEEccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccEEEcccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHccccEEEEcccccccccHHHHHHHHcccccccccccccHHHHHHHHccccccccccccccccccccccccEEEEccccccHHHHHHHHHcccEEEEEEEEEcHHHHHHHHHHHccccccccEEEEccHHcccHHHHHHHHHHcccccEEEccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccHHHHHHHHccccHHHHHHHHHHHcccccHHHHHHHHccHHHccccccccccccccccccccccHHHHHccHHHHHHHHHHccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccccccccccEEcccccccccccccccccccccccccccccEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHcccccEEEEEcEEEcccccHHHHHHHHHcccccEEcHHHHHHHHHHcccEccccccccccccccccccHHHHcccccccccccccHHHccEEEcccHHHHHHHHHHHHHHHcccccccccccccEHHHcccccEEEEcccccccccHHHHHHHHcccccccccccccHHHHHHHHcccccHHHHHHHHHHHHHHcccccEEEEcccHHHHHHHHHHHccccEEEEEEEEEcHHHHHHHHHHHHHcccccEEEEEccHHHccHHHHHHHHHHHccccEEEEcccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
mvqpkeepnvmdeglHIEKRASLLMMNFSVNEVDFALdklgkdapvyELVDFITAAQISenfeketddaphdndgtnedksdetlYGTMEITLQLLEMGFSENQVSLAIEKfgsktpiseLADKIFsgqifldtprsrsydtvkvkteycspdvvsqsrkmntsetsrgkrpkeeyfddfsnstsqfqhvdfqenrkgkrpkqeslddsssfldssweekvkpnssrygmqqafnsnpcrsinkvvaqppyffygNVVDVSIDCWVKMSHFLyslepefvnsQYFSALSrregylhnlpttnrfhippeppmtiqdaiphtkkwwpswdtrkhlscinsgtsGISQLCERFEKLLRDsrgvlssqqQRDILHRSEKLNLVWvgayklgpvdpeHIELIlgypsnhtqaAGNSLTARLESLRHCFQTDTLGYHLSVLksmfpggltMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWessgqtgelvqIEDIQALTTKKFESLIHKLgsidfvicqnsvpqipnskqisnskdpkmaaesdnlpdfdfsLYYEFVRVVQRVRSMKR
Flexible Loop (DISEMBL)
mvqpkeepnvmdeGLHIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQISENfeketddaphdndgtnedksdetLYGTMEITLQLLEMGFSENQVSLAIEKFGSKTPISELADKIfsgqifldtprsrsydtvkvkteycspdvvsqsrkmntsetsrgkrpkeeyfddfsnstsqfqhvdfqenrkgkrpkqeslddsssfldssWEEKVKPNSSRYGMQQAFNSNPCRSINKVVAQPPYFFYGNVVDVSIDCWVKMSHFLYSLEPEFVNSQYFSALSRREGYLHNLPTTNRFHIPPEPPMTIQDAIPHTKKWWPSWDTRKHLSCINSGTSGISQLCERFEKLLRDSrgvlssqqqrdilhrseklnlVWVGAYKLGPVDPEHIELILGYPSNHTQAAGNSLTARLESLRHCFQTDTLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKgvisietsetnrRILKRwwessgqtgelvqIEDIQALTTKKFESLIHKLGSIDFVICQNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVRSMKR
Low Complexity Region (SEG)
MVQPKEEPNVMDEGLHIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQISENFEKETDDAPHDNDGTNEDKSDETLYGTMEITLQLLEMGFSENQVSLAIEKFGSKTPISELADKIFSGQIFLDTPRSRSYDTVKVKTEYCSPDVVSQSRKMNTSETSRGKRPKEEYFDDFSNSTSQFQHVDFQENRKGKRPKQEslddsssfldssWEEKVKPNSSRYGMQQAFNSNPCRSINKVVAQPPYFFYGNVVDVSIDCWVKMSHFLYSLEPEFVNSQYFSALSRREGYLHNLPTTNRFHIPPEPPMTIQDAIPHTKKWWPSWDTRKHLSCINSGTSGISQLCERFEKLLRDSRGVLSSQQQRDILHRSEKLNLVWVGAYKLGPVDPEHIELILGYPSNHTQAAGNSLTARLESLRHCFQTDTLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDFVICQNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVRSMKR
Disordered region (IsUnstruct)
***************HIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQI**************************LYGTMEITLQLLEMGFSENQVSLAIEKFGSKTPISELADKIFSGQIFLDTPRSRSYDTVKVKTEYC****************************************************************************************CRSINKVVAQPPYFFYGNVVDVSIDCWVKMSHFLYSLEPEFVNSQYFSALSRREGYLHNLPTTNRFHIPPEPPMTIQDAIPHTKKWWPSWDTRKHLSCINSGTSGISQLCERFEKLLRDS**V*******DILHRSEKLNLVWVGAYKLGPVDPEHIELILGYPSNHTQAAGNSLTARLESLRHCFQTDTLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDFVICQNS**************************DFDFSLYYEFVRVVQR******
Disordered Region (DISOPRED)
******************KRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQ***********************************LQLLEMGFSENQVSLAIEKFGSKTPISELADKIFSGQIF***************************************************STS*******************************************G*****************AQPPYFFYGNVVDVSIDCWVKMSHFLYSLEPEFVNSQYFSALSRREGYLHNLPTTNRFHIPPEPPMTIQDAIPHTKKWWPSWDTRKHLSCINSGTSGISQLCER**K************QQRDILHRSEKLNLVWVGAYKLGPVDPEHIELILGYPSNHTQAAGNSLTARLESLRHCFQTDTLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDFVICQNSVPQIPNSKQI*************NLPDFDFSLYYEFVRVVQRVRSM**
Disordered Region (DISEMBL)
*********VMDEGLHIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQISENFEKETDDAPHDNDGTNEDKSDETLYGTMEITLQLLEMGFSENQVSLAIEKFGSKTPISELADKIFSGQIFLDTPRSRSYDTVKVKTEYCSPD*******************KEEYFDDFSNSTSQFQHVDF**********************************RYGMQQAFNSNPCRSINKVVAQPPYFFYGNVVDVSIDCWVKMSHFLYSLEPEFVNSQYFSALSRREGYLHNLPTTNRFHIPPEPPMTIQDAIPHTKKWWPSWDTRKHLSCINSGTSGISQLCERFEKLLRDSR********RDILHRSEKLNLVWVGAYKLGPVDPEHIELILGYPSNHTQAAGNSLTARLESLRHCFQTDTLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDFVICQNSVPQIPNS************AESDNLPDFDFSLYYEFVRVVQRVRSMKR
Disordered Region (DISPRO)
***********DEGLHIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQISEN*****************DKSDETLYGTMEITLQLLEMGFSENQVSLAIEKFGSKTPISELADKIFSGQIFLDTPRSR*YDTVKVKTE*********************KRPKEEYFDDFSNSTS*FQHVDFQ****************S**LDSSWEEKVKPNSSRYGMQQAFNSNPCRSINKVVAQPPYFFYGNVVDVSIDCWVKMSHFLYSLEPEFVNSQYFSALSRREGYLHNLPTTNRFHIPPEPPMTIQDAIPHTKKWWPSWDTRKHLSCINSGTSGISQLCERFEKLLRDSRGVLSSQQQRDILHRSEKLNLVWVGAYKLGPVDPEHIELILGYPSNHTQAAGNSLTARLESLRHCFQTDTLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDFVICQNSVPQIPNSKQISNS*DPKMAAESDNLPDFDFSLYYEFVRVVQRVRSM**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVQPKEEPNVMDEGLHIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQISENFEKETDDAPHDNDGTNEDKSDETLYGTMEITLQLLEMGFSENQVSLAIEKFGSKTPISELADKIFSGQIFLDTPRSRSYDTVKVKTEYCSPDVVSQSRKMNTSETSRGKRPKEEYFDDFSNSTSQFQHVDFQENRKGKRPKQESLDDSSSFLDSSWEEKVKPNSSRYGMQQAFNSNPCRSINKVVAQPPYFFYGNVVDVSIDCWVKMSHFLYSLEPEFVNSQYFSALSRREGYLHNLPTTNRFHIPPEPPMTIQDAIPHTKKWWPSWDTRKHLSCINSGTSGISQLCERFEKLLRDSRGVLSSQQQRDILHRSEKLNLVWVGAYKLGPVDPEHIELILGYPSNHTQAAGNSLTARLESLRHCFQTDTLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDFVICQNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVRSMKR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	576	2.2.26 [Sep-21-2011]
Q9M548	626	DNA (cytosine-5)-methyltr	no	no	0.565	0.520	0.430	3e-79
Q9LXE5	624	DNA (cytosine-5)-methyltr	no	no	0.755	0.697	0.327	2e-73

>sp|Q9M548|DRM2_ARATH DNA (cytosine-5)-methyltransferase DRM2 OS=Arabidopsis thaliana GN=DRM2 PE=1 SV=1

 Score =  296 bits (758), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 146/339 (43%), Positives = 205/339 (60%), Gaps = 13/339 (3%)

Query: 240 RSINKVVAQPPYFFYGNVVDVSIDCWVKMSHFLYSLEPEFVNSQYFSALSRREGYLHNLP 299
           RS+ ++   PP+F+Y NV       W  +S  L+ + PEFV+S+YF   +R+ GY+HNLP
Sbjct: 297 RSLPELARGPPFFYYENVALTPKGVWETISRHLFEIPPEFVDSKYFCVAARKRGYIHNLP 356

Query: 300 TTNRFHIPPEPPMTIQDAIPHTKKWWPSWDTRKHLSCINSGTSGISQLCERFEKLLRDSR 359
             NRF I P P  TI DA P +K+WWP WD R  L+CI + T G +QL  R    L    
Sbjct: 357 INNRFQIQPPPKYTIHDAFPLSKRWWPEWDKRTKLNCILTCT-GSAQLTNRIRVALEPYN 415

Query: 360 GVLSSQQ--QRDILHRSEKLNLVWVGAYKLGPVDPEHIELILGYPSNHTQAAGNSLTARL 417
                 +  QR ++ + +K NLVWVG  K  P++P+ +E ILG+P NHT+  G S T R 
Sbjct: 416 EEPEPPKHVQRYVIDQCKKWNLVWVGKNKAAPLEPDEMESILGFPKNHTRGGGMSRTERF 475

Query: 418 ESLRHCFQTDTLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSE 477
           +SL + FQ DT+ YHLSVLK +FP G+ +LS+F+GIGG EV LHRL IK+K V+S+E S+
Sbjct: 476 KSLGNSFQVDTVAYHLSVLKPIFPHGINVLSLFTGIGGGEVALHRLQIKMKLVVSVEISK 535

Query: 478 TNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDFVICQNSVPQIPNSKQ 537
            NR ILK +WE + QTGEL++  DIQ LT    E L+ K G  D VI  +    +    +
Sbjct: 536 VNRNILKDFWEQTNQTGELIEFSDIQHLTNDTIEGLMEKYGGFDLVIGGSPCNNLAGGNR 595

Query: 538 ISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVRSMKR 576
           +S     ++  E D       SL++E+ R+++ VR+  R
Sbjct: 596 VS-----RVGLEGDQS-----SLFFEYCRILEVVRARMR 624

Involved in de novo DNA methylation. Controls asymmetric and CpNpG methylation. Required for FWA gene silencing but not for the maintenance of SUP gene silencing. Functionally redundant to CMT3 to maintain non-CpG methylation. Involved in RNA-directed DNA methylation.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 3EC: 7

>sp|Q9LXE5|DRM1_ARATH DNA (cytosine-5)-methyltransferase DRM1 OS=Arabidopsis thaliana GN=DRM1 PE=4 SV=2

 Score =  277 bits (709), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 165/504 (32%), Positives = 256/504 (50%), Gaps = 69/504 (13%)

Query: 73  NDGTNEDKSDETLYGTMEITLQLLEMGFSENQVSLAIEKFGSKTPISELADKIFSGQIFL 132
           N+ +NED+          I   L++MG+     ++AIE+ G    + E+ D I + Q+  
Sbjct: 186 NNSSNEDR----------ILQALIKMGYLREDAAIAIERCGEDASMEEVVDFICAAQM-- 233

Query: 133 DTPRSRSYDTVKVKTEYCSPDVVSQSRKMNTSETSRGKRPKEEYFDDFSNSTSQFQHVDF 192
               +R +D +     Y  PD   +   MN ++  R                        
Sbjct: 234 ----ARQFDEI-----YAEPD---KKELMNNNKKRRTYT--------------------- 260

Query: 193 QENRKGKRPKQESLDDSSSFLDSSWEEKVKPNSSRYGMQQAFNSNPCRSINKVVAQPPYF 252
                 + P++ + D   S         V PN     M +         I  +   PP+F
Sbjct: 261 ------ETPRKPNTDQLISLPKEMIGFGV-PNHPGLMMHRPV------PIPDIARGPPFF 307

Query: 253 FYGNVVDVSIDCWVKMSHFLYSLEPEFVNSQYFSALSRREGYLHNLPTTNRFHIPPEPPM 312
           +Y NV       W K+S  LY + PEFV+S++F A +R+ GY+HNLP  NRF I P    
Sbjct: 308 YYENVAMTPKGVWAKISSHLYDIVPEFVDSKHFCAAARKRGYIHNLPIQNRFQIQPPQHN 367

Query: 313 TIQDAIPHTKKWWPSWDTRKHLSCINSGTSGISQLCERFEKLLRDSRGVLSSQQQRDILH 372
           TIQ+A P TK+WWPSWD R  L+C+ +  +  S+L E+  + L    G      Q+ +++
Sbjct: 368 TIQEAFPLTKRWWPSWDGRTKLNCLLTCIAS-SRLTEKIREALERYDGETPLDVQKWVMY 426

Query: 373 RSEKLNLVWVGAYKLGPVDPEHIELILGYPSNHTQAAGNSLTARLESLRHCFQTDTLGYH 432
             +K NLVWVG  KL P+D + +E +LG+P +HT+  G S T R +SL + FQ DT+ YH
Sbjct: 427 ECKKWNLVWVGKNKLAPLDADEMEKLLGFPRDHTRGGGISTTDRYKSLGNSFQVDTVAYH 486

Query: 433 LSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQ 492
           LSVLK +FP G+ +LS+F+GIGG EV LHRL IK+  V+S+E S+ NR IL+ +WE + Q
Sbjct: 487 LSVLKPLFPNGINVLSLFTGIGGGEVALHRLQIKMNVVVSVEISDANRNILRSFWEQTNQ 546

Query: 493 TGELVQIEDIQALTTKKFESLIHKLGSIDFVICQNSVPQIPNSKQISNSKDPKMAAESDN 552
            G L + +D+Q L     E L+ + G  D VI  +     P +     ++  ++    ++
Sbjct: 547 KGILREFKDVQKLDDNTIERLMDEYGGFDLVIGGS-----PCNNLAGGNRHHRVGLGGEH 601

Query: 553 LPDFDFSLYYEFVRVVQRVRSMKR 576
                 SL++++ R+++ VR   R
Sbjct: 602 -----SSLFFDYCRILEAVRRKAR 620

Involved in de novo DNA methylation. Controls asymmetric and CpNpG methylation. Required for FWA gene silencing but not for the maintenance of SUP gene silencing. Functionally redundant to CMT3 to maintain non-CpG methylation. Involved in RNA-directed DNA methylation.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 7

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	576
225432124	712	PREDICTED: DNA (cytosine-5)-methyltransf	0.977	0.790	0.564	0.0
341868935	710	domain rearranged methyltransferase [Vit	0.973	0.790	0.561	0.0
449441506	724	PREDICTED: uncharacterized protein LOC10	0.963	0.766	0.547	1e-175
449528407	644	PREDICTED: DNA (cytosine-5)-methyltransf	0.963	0.861	0.547	1e-174
224112050	609	DNA methyltransferase [Populus trichocar	0.916	0.866	0.536	1e-172
255556520	678	conserved hypothetical protein [Ricinus	0.916	0.778	0.536	1e-166
147779004	1960	hypothetical protein VITISV_038412 [Viti	0.847	0.248	0.568	1e-165
356564666	729	PREDICTED: DNA (cytosine-5)-methyltransf	0.967	0.764	0.516	1e-162
356519874	702	PREDICTED: DNA (cytosine-5)-methyltransf	0.965	0.792	0.519	1e-161
357479111	1032	DNA (cytosine-5)-methyltransferase DRM2	0.960	0.535	0.507	1e-155

>gi|225432124|ref|XP_002264226.1| PREDICTED: DNA (cytosine-5)-methyltransferase DRM2-like [Vitis vinifera]

 Score =  668 bits (1723), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 337/597 (56%), Positives = 429/597 (71%), Gaps = 34/597 (5%)

Query: 3   QPKEEPNVMDEGLHIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQISENF 62
            PKEEP+V   G++ +KRA+L+MM FSV+EV+FA+DKLG+ APV ELVDFI AAQI+ + 
Sbjct: 125 HPKEEPDV-SSGVNDDKRATLVMMKFSVDEVEFAMDKLGEGAPVNELVDFIIAAQIAGSS 183

Query: 63  EKETDDAPHDNDGTNEDKSDETLYGTMEITLQLLEMGFSENQVSLAIEKFGSKTPISELA 122
           + + DD  + N+   ED ++E L+GTM+ TL+LLEMGFSEN++S AIEKFGS+ PISELA
Sbjct: 184 KMDADDPTYGNEERKEDCNNEALFGTMDKTLRLLEMGFSENEISSAIEKFGSEVPISELA 243

Query: 123 DKIFSGQIFLDTPRSRSYDTVKVKTEYCSPDVVSQSRKMNTSETSRGKRPKEEYFDDFS- 181
           D IF+GQI      S +  T ++   +   D  S  + M      R         +++S 
Sbjct: 244 DSIFAGQIAEKDKHSSA--TFRLNHSHTGNDYRSFGKGMEDGLKRRSSGTFMVKTEEYSP 301

Query: 182 NSTSQFQHVDFQENRKGKRPKQESLDDSSSFLDSSWEE---------------------K 220
            + SQ + VD  ++ KGKRPKQESLDDSS+++  +W E                     +
Sbjct: 302 EAVSQLRAVDIGDDHKGKRPKQESLDDSSAYIGPTWLEGRKGDHKFSSCRMPLPRRDLNQ 361

Query: 221 VKPNSSRYGMQQAFNSNPCRSINKVVAQPPYFFYGNVVDVSIDCWVKMSHFLYSLEPEFV 280
           V    +++GM       PC+S++++VA+PPYFFYGNV +VS D W K+S FLY+LEPEFV
Sbjct: 362 VAGQLNKFGMSSISKPMPCKSLDQLVAKPPYFFYGNVTNVSHDSWNKISQFLYALEPEFV 421

Query: 281 NSQYFSALSRREGYLHNLPTTNRFHIPPEPPMTIQDAIPHTKKWWPSWDTRKHLSCINSG 340
           N+Q+FSAL+R+EGY+HNLP+ NRFHI P+PPMTI++ IP+TKKWWPSWDTRK LSCI+S 
Sbjct: 422 NTQFFSALNRKEGYIHNLPSENRFHILPKPPMTIEEVIPYTKKWWPSWDTRKQLSCISSE 481

Query: 341 TSGISQLCERFEKLLRDSRGVLSSQQQRDILHRSEKLNLVWVGAYKLGPVDPEHIELILG 400
           TSGISQLC+R  K+L DSRG+LS +QQRDILH    LNLVWVG  KL P++PEH+E ILG
Sbjct: 482 TSGISQLCDRLGKILVDSRGLLSFEQQRDILHHCRTLNLVWVGQCKLSPIEPEHLERILG 541

Query: 401 YPSNHTQAAGNSLTARLESLRHCFQTDTLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTL 460
           YP NHT+    SL  RL+SLRHCFQ DTLGYHLSVLKSMFP GLTMLS+FSGIGGAE+TL
Sbjct: 542 YPLNHTRVPEYSLIERLQSLRHCFQIDTLGYHLSVLKSMFPKGLTMLSLFSGIGGAELTL 601

Query: 461 HRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI 520
           H+LGI LKGV+S+E SET R ILK+WW ++GQTGELVQI+DIQ L + K ESLI K G  
Sbjct: 602 HQLGIHLKGVVSVEISETKRNILKKWWHNTGQTGELVQIDDIQKLASSKLESLIEKFGGF 661

Query: 521 DFVICQNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVRS-MKR 576
           DFVICQN            +S++ KM A+ D+L  FDFSL+ EFVRV+ RVRS M+R
Sbjct: 662 DFVICQNPC--------TYSSRNSKMVADGDSLTGFDFSLFCEFVRVLHRVRSTMER 710

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|341868935|gb|AEK98591.1| domain rearranged methyltransferase [Vitis amurensis]

 Score =  655 bits (1691), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 335/597 (56%), Positives = 426/597 (71%), Gaps = 36/597 (6%)

Query: 3   QPKEEPNVMDEGLHIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQISENF 62
            PKEEP+V   G++ +KRA+L+MM FSV+EV+FA+DKLG+ APV ELVDFI AAQI+ + 
Sbjct: 125 HPKEEPDV-SSGVNDDKRATLVMMKFSVDEVEFAMDKLGEGAPVNELVDFIIAAQIAGSS 183

Query: 63  EKETDDAPHDNDGTNEDKSDETLYGTMEITLQLLEMGFSENQVSLAIEKFGSKTPISELA 122
           + + DD  + N+   ED ++E L+GTM+ TL+LLEMGFSEN++S AIEKFGS+ PISELA
Sbjct: 184 KMDADDPTYGNEERKEDCNNEALFGTMDKTLRLLEMGFSENEISSAIEKFGSEVPISELA 243

Query: 123 DKIFSGQIFLDTPRSRSYDTVKVKTEYCSPDVVSQSRKMNTSETSRGKRPKEEYFDDFS- 181
           D IF+GQI      S +  T ++   +   D  S  + M      R         +++S 
Sbjct: 244 DSIFAGQIAEKDKHSSA--TFRLNHSHTGNDYRSFGKGMEDGLKRRSSGTFMVKTEEYSP 301

Query: 182 NSTSQFQHVDFQENRKGKRPKQESLDDSSSFLDSSWEE---------------------K 220
            + SQ + VD  ++ KGKRPKQESLDDSS+++  +W E                     +
Sbjct: 302 EAVSQLRAVDIGDDHKGKRPKQESLDDSSAYIGPTWLEGRKGDHKFSSCRMPLPRRDLNQ 361

Query: 221 VKPNSSRYGMQQAFNSNPCRSINKVVAQPPYFFYGNVVDVSIDCWVKMSHFLYSLEPEFV 280
           V    +++GM       PC+S++++VA+PPYFFYGNV +VS D W K+S FLY+LEPEFV
Sbjct: 362 VAGQLNKFGMSSISKPMPCKSLDQLVAKPPYFFYGNVSNVSHDSWNKISQFLYALEPEFV 421

Query: 281 NSQYFSALSRREGYLHNLPTTNRFHIPPEPPMTIQDAIPHTKKWWPSWDTRKHLSCINSG 340
           N+Q+FSAL+R+EG  HNLP+ NRFHI P+PPMTI++ IP+TKKWWPSWDT K LSCI+S 
Sbjct: 422 NTQFFSALNRKEG--HNLPSENRFHILPKPPMTIEEVIPYTKKWWPSWDTIKQLSCISSE 479

Query: 341 TSGISQLCERFEKLLRDSRGVLSSQQQRDILHRSEKLNLVWVGAYKLGPVDPEHIELILG 400
           TSGISQLC+R  K+L DSRG+LS +QQRDILH    LNLVWVG  KL P++PEH+E ILG
Sbjct: 480 TSGISQLCDRLGKILVDSRGLLSFEQQRDILHHCRTLNLVWVGQCKLSPIEPEHLERILG 539

Query: 401 YPSNHTQAAGNSLTARLESLRHCFQTDTLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTL 460
           YP NHT+    SL  RL+SLRHCFQ DTLGYHLSVLKSMFP GLTMLS+FSGIGGAE+TL
Sbjct: 540 YPLNHTRVPEYSLIERLQSLRHCFQIDTLGYHLSVLKSMFPKGLTMLSLFSGIGGAELTL 599

Query: 461 HRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI 520
           H+LGI LKGV+S+E SET R ILK+WW ++GQTGELVQI+DIQ L + K ESLI K G  
Sbjct: 600 HQLGIHLKGVVSVEISETKRNILKKWWHNTGQTGELVQIDDIQKLASSKLESLIEKFGGF 659

Query: 521 DFVICQNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVRS-MKR 576
           DFVICQN            +S++ KM A+ D+L  FDFSL+ EFVRV+ RVRS M+R
Sbjct: 660 DFVICQNPC--------TYSSRNSKMVADGDSLTGFDFSLFCEFVRVLHRVRSTMER 708

Source: Vitis amurensis

Species: Vitis amurensis

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449441506|ref|XP_004138523.1| PREDICTED: uncharacterized protein LOC101206985 [Cucumis sativus]

 Score =  620 bits (1599), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 334/610 (54%), Positives = 409/610 (67%), Gaps = 55/610 (9%)

Query: 2   VQPKEEPNVMDEGLHIE--KRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQIS 59
           V PKEE    D+  HI    +ASLL+MNFS +EVDFA+DKLG DAP+ ELVDFI AAQI+
Sbjct: 126 VIPKEE---ADDYYHISDTNKASLLVMNFSADEVDFAIDKLGGDAPLNELVDFIIAAQIA 182

Query: 60  ENFEKETDDAPHDNDGTNEDKSDETLYGTMEITLQLLEMGFSENQVSLAIEKFGSKTPIS 119
              EKETDDA   N+   E+ +DETL+ TME TL+LLEMGFSEN+VSLAIEKFGS+T +S
Sbjct: 183 IKLEKETDDAFCRNELKKEE-NDETLFVTMEKTLRLLEMGFSENEVSLAIEKFGSETQVS 241

Query: 120 ELADKIFSGQIFLDTP---------------RSRSYDTVKVKTEYCSPDVVSQSRKMNTS 164
           ELAD I +G+I  D P                +R     KVK E  S  V    R +N  
Sbjct: 242 ELADSIVTGRIASDYPGDVKCSPSSFGIGGLYTREDYVTKVKAEESSSAVGPLPRNVNIE 301

Query: 165 ETSRGKRPKEEYFDDFSNSTSQFQHVDFQENRKGKRPKQESLDDSSSFLDSSW-EEKVKP 223
              +GKRPKEE  DD  N T++          KGKRPKQE  DD  S     W E KV P
Sbjct: 302 AIQKGKRPKEENMDDLLNPTTRLN------KHKGKRPKQEYADDLGSLYGPGWVESKVNP 355

Query: 224 N--------SSRYGMQQAFN------------SNPCRSINKVVAQPPYFFYGNVVDVSID 263
           +        SSR  + ++ +            SNP R++ KVV +PP+F YGNV+D+S D
Sbjct: 356 DITSFDIPPSSRLNLSRSLDKLVAKPPCPPLKSNPSRALEKVVTKPPFFLYGNVLDISRD 415

Query: 264 CWVKMSHFLYSLEPEFVNSQYFSALSRREGYLHNLPTTNRFHIPPEPPMTIQDAIPHTKK 323
            W K+S FLY++EPEFV+++ FSALSR EGY+HNLP  NRFHI P PPMTIQDA   TKK
Sbjct: 416 SWAKVSKFLYAVEPEFVDTRSFSALSRTEGYVHNLPCENRFHIIPLPPMTIQDAT-RTKK 474

Query: 324 WWPSWDTRKHLSCINSGTSGISQLCERFEKLLRDSRGVLSSQQQRDILHRSEKLNLVWVG 383
           WWPSWDTRK+LSCINS T G+ QLC+R  K L DS G  SS ++RDILH    LNL+WV 
Sbjct: 475 WWPSWDTRKYLSCINSETRGVPQLCDRLTKTLTDSGGHPSSHEERDILHHCIALNLIWVS 534

Query: 384 AYKLGPVDPEHIELILGYPSNHTQAAGNSLTARLESLRHCFQTDTLGYHLSVLKSMFPGG 443
            +KL PV+PE +E +LGYP NHTQ A +S   RL+ L++CFQTD LGYHLSVLKSMFP G
Sbjct: 535 QFKLAPVEPEQLECVLGYPVNHTQDAESSSIERLQYLKYCFQTDALGYHLSVLKSMFPEG 594

Query: 444 LTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQ 503
           L +LS+FSGIGGAE+ LHRLGI LK V+S+E+S   RRILK+WW SSGQTGEL QIEDIQ
Sbjct: 595 LVVLSIFSGIGGAEIALHRLGIHLKVVVSVESSAAKRRILKKWWHSSGQTGELEQIEDIQ 654

Query: 504 ALTTKKFESLIHKLGSIDFVICQNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFSLYYE 563
            LT+ K  + I K G  D VICQN     P S+ +S+SK    + +++ +  FDFS++YE
Sbjct: 655 KLTSIKINNWITKYGGFDLVICQN-----PCSRCLSSSK-LNQSGDAEGIASFDFSIFYE 708

Query: 564 FVRVVQRVRS 573
           FVRV+Q VR+
Sbjct: 709 FVRVLQSVRN 718

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449528407|ref|XP_004171196.1| PREDICTED: DNA (cytosine-5)-methyltransferase DRM2-like [Cucumis sativus]

 Score =  619 bits (1597), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 334/610 (54%), Positives = 407/610 (66%), Gaps = 55/610 (9%)

Query: 2   VQPKEEPNVMDEGLHIE--KRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQIS 59
           V PKEE    D+  HI    +ASLL+MNFS +EVDFA+DKLG DAP+ ELVDFI AAQI+
Sbjct: 46  VIPKEE---ADDYYHISDTNKASLLVMNFSADEVDFAIDKLGGDAPLNELVDFIIAAQIA 102

Query: 60  ENFEKETDDAPHDNDGTNEDKSDETLYGTMEITLQLLEMGFSENQVSLAIEKFGSKTPIS 119
              EKETDDA   N+   E+ +DETL+ TME TL+LLEMGFSEN+VSLAIEKFGS+T +S
Sbjct: 103 IKLEKETDDAFCRNELKKEE-NDETLFVTMEKTLRLLEMGFSENEVSLAIEKFGSETQVS 161

Query: 120 ELADKIFSGQIFLDTPRSRSYD---------------TVKVKTEYCSPDVVSQSRKMNTS 164
           ELAD I +G+I  D P                       KVK E  S  V    R +N  
Sbjct: 162 ELADSIVTGRIASDYPGDVKCSPSSFGIGGLYTPEDYVTKVKAEESSSAVGPLPRNVNIE 221

Query: 165 ETSRGKRPKEEYFDDFSNSTSQFQHVDFQENRKGKRPKQESLDDSSSFLDSSW-EEKVKP 223
              +GKRPKEE  DD  N T++          KGKRPKQE  DD  S     W E KV P
Sbjct: 222 AIQKGKRPKEENMDDLLNPTTRLN------KHKGKRPKQEYADDLGSLYGPGWVESKVNP 275

Query: 224 N--------SSRYGMQQAFN------------SNPCRSINKVVAQPPYFFYGNVVDVSID 263
           +        SSR  + ++ +            SNP R++ KVV +PP+F YGNV+D+S D
Sbjct: 276 DITSFDIPPSSRLNLSRSLDKLVAKPPCPPLKSNPSRALEKVVTKPPFFLYGNVLDISRD 335

Query: 264 CWVKMSHFLYSLEPEFVNSQYFSALSRREGYLHNLPTTNRFHIPPEPPMTIQDAIPHTKK 323
            W K+S FLY++EPEFV+++ FSALSR EGY+HNLP  NRFHI P PPMTIQDA   TKK
Sbjct: 336 SWAKVSKFLYAVEPEFVDTRSFSALSRTEGYVHNLPCENRFHIIPLPPMTIQDAT-RTKK 394

Query: 324 WWPSWDTRKHLSCINSGTSGISQLCERFEKLLRDSRGVLSSQQQRDILHRSEKLNLVWVG 383
           WWPSWDTRK+LSCINS T G+ QLC+R  K L DS G  SS Q+RDILH    LNL+WV 
Sbjct: 395 WWPSWDTRKYLSCINSETRGVPQLCDRLTKTLTDSGGHPSSHQERDILHHCIALNLIWVS 454

Query: 384 AYKLGPVDPEHIELILGYPSNHTQAAGNSLTARLESLRHCFQTDTLGYHLSVLKSMFPGG 443
            +KL PV+PE +E +LGYP NHTQ A +S   RL+ L++CFQTD LGYHLSVLKSMFP G
Sbjct: 455 QFKLAPVEPEQLECVLGYPVNHTQDAESSSIERLQYLKYCFQTDALGYHLSVLKSMFPEG 514

Query: 444 LTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQ 503
           L +LS+FSGIGGAE+ LHRLGI LK V+S+E+S   RRILK+WW SSGQTGEL QIEDIQ
Sbjct: 515 LVVLSIFSGIGGAEIALHRLGIHLKVVVSVESSAAKRRILKKWWHSSGQTGELEQIEDIQ 574

Query: 504 ALTTKKFESLIHKLGSIDFVICQNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFSLYYE 563
            LT+ K  + I K G  D VICQN     P S+ +S+SK    + +++ +  FDFS++YE
Sbjct: 575 KLTSIKINNWITKYGGFDLVICQN-----PCSRCLSSSK-LNQSGDAEGIASFDFSIFYE 628

Query: 564 FVRVVQRVRS 573
           FVRV+Q VR+
Sbjct: 629 FVRVLQSVRN 638

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224112050|ref|XP_002316067.1| DNA methyltransferase [Populus trichocarpa] gi|222865107|gb|EEF02238.1| DNA methyltransferase [Populus trichocarpa]

 Score =  612 bits (1579), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 306/570 (53%), Positives = 399/570 (70%), Gaps = 42/570 (7%)

Query: 5   KEEPNVMDEGLHIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQISENFEK 64
           KEEP+V DE ++ +KR SLL MNF   EV+ A+DKLG++AP+ E++DFI AAQI+ N ++
Sbjct: 79  KEEPDVFDE-VYDDKRVSLLKMNFPAKEVELAMDKLGENAPINEIIDFIIAAQIANNLDR 137

Query: 65  ETDDAPHDNDGTNEDKSDETLYGTMEITLQLLEMGFSENQVSLAIEKFGSKTPISELADK 124
           ET+D P  +    ED +DETLYGTM+ TL LL MGFSEN+VSLAI+ +            
Sbjct: 138 ETEDMPDIDAENKEDVNDETLYGTMDKTLCLLNMGFSENEVSLAIDNW------------ 185

Query: 125 IFSGQIFLDTPRSRSYDTVKVKTEYCSPDVVSQSRKMNTSETSRGKRPKEEYFDDFSNST 184
                             VK +TE C  D + QSR MNT ET +GKRP++E+ + +    
Sbjct: 186 ------------------VKSETEDCRRDAILQSRDMNTKETRKGKRPRQEHIEGYQE-- 225

Query: 185 SQFQHVDFQENRKGKRPKQESLDDSSSFLDSSW-EEKVKPNSSRYGMQQAFNSNPCRSIN 243
           +Q +H   +EN  G++PKQE    SSS+ +  W EEKV  +++ +GM + F  NPC+ ++
Sbjct: 226 AQPRHDSLEENCAGEQPKQEYDYGSSSYFEHEWVEEKVNSDTTTFGMPKPFKCNPCKILD 285

Query: 244 KVVAQPPYFFYGNVVDVSIDCWVKMSHFLYSLEPEFVNSQYFSALSRREGYLHNLPTTNR 303
           ++ A+PPYFFYGNV   S D W K+S FLY +EPEFV++Q+FSALSRREGY+HNLPT NR
Sbjct: 286 QIAAKPPYFFYGNVATASSDTWGKISQFLYGIEPEFVDTQFFSALSRREGYIHNLPTENR 345

Query: 304 FHIPPEPPMTIQDAIPHTKKWWPSWDTRKHLSCINSGTSGISQLCERFEKLLRDSRGVLS 363
            HI P+PP+T++D +P TKKWWPSWD RK +SC N  +SG SQLC+   ++L DSRG+LS
Sbjct: 346 SHILPKPPITLEDLMPSTKKWWPSWDARKKMSCRNFDSSGSSQLCDMLGRMLDDSRGLLS 405

Query: 364 SQQQRDILHRSEKLNLVWVGAYKLGPVDPEHIELILGYPSNHTQAAGNSLTARLESLRHC 423
           ++QQRD+L   + LNL+WVG  KL P++  H+E ILGYP NHT  A   LT R+ SLR+ 
Sbjct: 406 AEQQRDLLRHCQALNLMWVGPNKLSPLESAHLEKILGYPLNHTLIADYPLTERMYSLRYS 465

Query: 424 FQTDTLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRIL 483
           FQTDTLGYHLSVLKS+FP G+T+LS+FSGIGGAE+TLHRLGI LKGV+S+ETSETNRR+L
Sbjct: 466 FQTDTLGYHLSVLKSIFPQGITVLSLFSGIGGAEITLHRLGIHLKGVVSVETSETNRRVL 525

Query: 484 KRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDFVICQNSVPQIPNSKQISNSKD 543
           KRWW SSGQTG L QIEDI+ LT+   E L+      DFVICQNS  +         SK 
Sbjct: 526 KRWWYSSGQTGRLEQIEDIRKLTSSTVERLVENFVCFDFVICQNSFTR--------PSKI 577

Query: 544 PKMAAESDNLPDFDFSLYYEFVRVVQRVRS 573
           P + +  ++   FDF+L+ EFVRV+QRVRS
Sbjct: 578 PGVGSGLESQHFFDFTLFNEFVRVLQRVRS 607

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255556520|ref|XP_002519294.1| conserved hypothetical protein [Ricinus communis] gi|223541609|gb|EEF43158.1| conserved hypothetical protein [Ricinus communis]

 Score =  590 bits (1521), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 307/572 (53%), Positives = 388/572 (67%), Gaps = 44/572 (7%)

Query: 3   QPKEEPNVMDEGLHIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQISENF 62
           QPKEEP+V   G    KRASLL MNFS  EVDFA++KLG DAPV E+VDFITAAQ++ NF
Sbjct: 144 QPKEEPDVF--GFDDSKRASLLHMNFSAEEVDFAMEKLGTDAPVDEIVDFITAAQVAANF 201

Query: 63  EKETDDAPHDNDGTNEDKSDETLYGTMEITLQLLEMGFSENQVSLAIEKFGSKTPISELA 122
           ++E DD    +   N+  S  +                + + V+   E F  +       
Sbjct: 202 DEERDDELEHDVEQNKYCSRHSR--------------MNPSHVARGGESFNME------- 240

Query: 123 DKIFSGQIFLDTPRSRSYDTVKVKTEYCSPDVVSQSRKMNTSETSRGKRPKEEYFDDFSN 182
                     D  R  SY   + K E  S + VS+S  +N  E  RGKRPK+EY + +SN
Sbjct: 241 --------IRDEQRRDSYG--RKKPENLSQEAVSRSSNLNLEEIHRGKRPKQEYTEGYSN 290

Query: 183 STSQFQHVDFQENRKGKRPKQESLDDSSSFLDSSW-EEKVKPNSSRYGMQQAFNSNPCRS 241
             +Q +H  F+EN + + PK E   DSS   +S+W EEKV    + + + +      C+S
Sbjct: 291 --TQDEHFGFEENYEEEGPKPEYTADSSFSFESAWVEEKVDTEITGFRIPREPKFKSCKS 348

Query: 242 INKVVAQPPYFFYGNVVDVSIDCWVKMSHFLYSLEPEFVNSQYFSALSRREGYLHNLPTT 301
           ++++VA+PPYF YGNV  VS+D W K+S FLY++EPEFVN+Q+FSALSR+EGY+HNLPT 
Sbjct: 349 VDRMVAKPPYFLYGNVATVSLDTWGKISQFLYAVEPEFVNTQFFSALSRKEGYVHNLPTE 408

Query: 302 NRFHIPPEPPMTIQDAIPHTKKWWPSWDTRKHLSCINSGTSGISQLCERFEKLLRDSRGV 361
           NRFHI P+PPM+I DA+PH KKWWPSWDTRK LS IN  T+G+SQLC+R  ++L DSRG+
Sbjct: 409 NRFHILPKPPMSILDAMPHIKKWWPSWDTRKQLSFINYETNGLSQLCDRLGRMLTDSRGL 468

Query: 362 LSSQQQRDILHRSEKLNLVWVGAYKLGPVDPEHIELILGYPSNHTQAAGNSLTARLESLR 421
           +SSQQ+RDILH   KLNLVWVG +K+ P++PEH+ELILGYP NHTQ    SLT RL +LR
Sbjct: 469 ISSQQKRDILHHCHKLNLVWVGLHKVRPIEPEHLELILGYPLNHTQTTEGSLTERLHALR 528

Query: 422 HCFQTDTLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRR 481
           + FQ DTLGYHLSVLKSMFP G+T+LS+FSGIGGAEV LHRLGI +KGV+S+ETSET R+
Sbjct: 529 YSFQIDTLGYHLSVLKSMFPEGITVLSLFSGIGGAEVALHRLGIHMKGVVSVETSETKRK 588

Query: 482 ILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDFVICQNSVPQIPNSKQISNS 541
           IL+ WW +SGQTGEL QIEDIQ LTTKK + LI + G  DFVICQ        S     S
Sbjct: 589 ILRMWWRNSGQTGELEQIEDIQKLTTKKIDRLIERFGGFDFVICQ--------SPCTCAS 640

Query: 542 KDPKMAAESDNLPDFDFSLYYEFVRVVQRVRS 573
            +PKM   +D     DFSL+ EFVRV+QRVR+
Sbjct: 641 GNPKMEQRADARSALDFSLFCEFVRVLQRVRT 672

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147779004|emb|CAN75753.1| hypothetical protein VITISV_038412 [Vitis vinifera]

 Score =  590 bits (1520), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 296/521 (56%), Positives = 372/521 (71%), Gaps = 33/521 (6%)

Query: 79   DKSDETLYGTMEITLQLLEMGFSENQVSLAIEKFGSKTPISELADKIFSGQIFLDTPRSR 138
            D ++E L+GTM+ TL+LLEMGFSEN++S AIEKFGS+ PISELAD IF+GQI      S 
Sbjct: 1361 DCNNEALFGTMDKTLRLLEMGFSENEISSAIEKFGSEVPISELADSIFAGQIAEKDKHSS 1420

Query: 139  SYDTVKVKTEYCSPDVVSQSRKMNTSETSRGKRPKEEYFDDFS-NSTSQFQHVDFQENRK 197
            +  T ++   +   D  S  + M      R         +++S  + SQ + VD  ++ K
Sbjct: 1421 A--TFRLNHSHTGNDYRSFGKGMEDGLKRRSSGTFMVKTEEYSPEAVSQLRAVDIGDDHK 1478

Query: 198  GKRPKQESLDDSSSFLDSSWEE---------------------KVKPNSSRYGMQQAFNS 236
            GKRPKQESLDDSS+++  +W E                     +V    +++GM      
Sbjct: 1479 GKRPKQESLDDSSAYIGPTWJEGRKGDHKFSSCRMPLPRRDLNQVAGQLNKFGMSSISKP 1538

Query: 237  NPCRSINKVVAQPPYFFYGNVVDVSIDCWVKMSHFLYSLEPEFVNSQYFSALSRREGYLH 296
             PC+S++++VA+PPYFFYGNV +VS D W K+S FLY+LEPEFVN+Q+FSAL+R+EGY+H
Sbjct: 1539 MPCKSLDQLVAKPPYFFYGNVXNVSHDSWNKISQFLYALEPEFVNTQFFSALNRKEGYIH 1598

Query: 297  NLPTTNRFHIPPEPPMTIQDAIPHTKKWWPSWDTRKHLSCINSGTSGISQLCERFEKLLR 356
            NLP+ NRFHI P+PPMTI++ IP+TKKWWPSWDTRK LSCI+S TSGISQLC+R  K+L 
Sbjct: 1599 NLPSENRFHILPKPPMTIEEVIPYTKKWWPSWDTRKQLSCISSETSGISQLCDRLGKILV 1658

Query: 357  DSRGVLSSQQQRDILHRSEKLNLVWVGAYKLGPVDPEHIELILGYPSNHTQAAGNSLTAR 416
            DSRG+LS +QQRDILH    LNLVWVG  KL P++PEH+E ILGYP NHT+    SL  R
Sbjct: 1659 DSRGLLSFEQQRDILHHCRTLNLVWVGQCKLSPIEPEHLERILGYPLNHTRVPEYSLIER 1718

Query: 417  LESLRHCFQTDTLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETS 476
            L+SLRHCFQ DTLGYHLSVLKSMFP GLTMLS+FSGIGGAE+TLH+LGI LKGV+S+E S
Sbjct: 1719 LQSLRHCFQIDTLGYHLSVLKSMFPKGLTMLSLFSGIGGAELTLHQLGIHLKGVVSVEIS 1778

Query: 477  ETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDFVICQNSVPQIPNSK 536
            ET R ILK+WW ++GQTGELVQI+DIQ L + K ESLI K G  DFVICQN         
Sbjct: 1779 ETKRNILKKWWHNTGQTGELVQIDDIQKLASSKLESLIEKFGGFDFVICQNPC------- 1831

Query: 537  QISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVRS-MKR 576
               +S++ KM A+ D+L  FDFSL+ EFVRV+ RVRS M+R
Sbjct: 1832 -TYSSRNSKMVADGDSLTGFDFSLFCEFVRVLHRVRSTMER 1871

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356564666|ref|XP_003550572.1| PREDICTED: DNA (cytosine-5)-methyltransferase DRM1-like [Glycine max]

 Score =  577 bits (1486), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 306/592 (51%), Positives = 393/592 (66%), Gaps = 35/592 (5%)

Query: 3   QPKEEPNVMDEGLHIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQISENF 62
           Q KEEP+ +  G+  +KR SLLMMNFSV EV+ A+ KLG +A + ELVDFI A QI++  
Sbjct: 149 QAKEEPDELS-GVIDDKRGSLLMMNFSVEEVELAIHKLGDEASIPELVDFIFAWQIAKKL 207

Query: 63  EKETDDAPHDNDGTNEDKSDETLYGTMEITLQLLEMGFSENQVSLAIEKFGSKTPISELA 122
           +KE DD      G   + ++E L+G M  TLQL EMGFSEN+VS AI+K GS+ PISELA
Sbjct: 208 KKEPDDITFTYYGRGNEVTNEKLFGIMAKTLQLFEMGFSENEVSSAIDKLGSEAPISELA 267

Query: 123 DKIFSGQIFLD-------------------TPRSRSYDTVKVKTEYCSPDVVSQSRKMNT 163
           + IF+ Q  +D                    P    Y T +VK E  S +   QS ++N 
Sbjct: 268 NFIFAEQNGIDYVMEYKFPTTSTYSVGIKEEPEMDLYGTAEVKVEDFSNEP-PQSSQVNL 326

Query: 164 SETSRGKRPKEEYFDDFSNSTSQFQHVDFQENRKGKRPKQESLDDSSSFLDSSW-EEKVK 222
            ET      KEE   D   S    Q++D  EN +GKRPK E  DDS + L+ SW EE+V 
Sbjct: 327 EETYNEDMVKEEEGIDAFPSYVSDQYLDVVENGRGKRPKYEHDDDSITCLEPSWVEERVD 386

Query: 223 PNSSRYGMQQAFNSNPCRSINKVVAQPPYFFYGNVVDVSIDCWVKMSHFLYSLEPEFVNS 282
              +   M +    NP R ++ V A+PP+F +GNV ++S D W KMS FLY +EPEF N+
Sbjct: 387 VVVAE--MSRRPKPNPSRCLSSVAAKPPFFLFGNVSNISYDSWTKMSKFLYGIEPEFANA 444

Query: 283 QYFSALSRREGYLHNLPTTNRFHIPPEPPMTIQDAIPHTKKWWPSWDTRKHLSCINSGTS 342
           Q FSAL R EGY+HNLP  NRFHI P+PPMTI+DA+P TKKWWP WD+RK LS I   T+
Sbjct: 445 QSFSALDRIEGYIHNLPVENRFHILPKPPMTIEDAMPLTKKWWPPWDSRKQLSSIYCETN 504

Query: 343 GISQLCERFEKLLRDSRGVLSSQQQRDILHRSEKLNLVWVGAYKLGPVDPEHIELILGYP 402
           GI+Q C+R   +L DS GVL+S+ Q+DIL     LNLVW+G +KLGPV+PE +ELILGYP
Sbjct: 505 GIAQTCDRLGNILADSGGVLTSELQKDILRYCRGLNLVWIGKFKLGPVEPEQLELILGYP 564

Query: 403 SNHTQAAGNSLTARLESLRHCFQTDTLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHR 462
            NHT+A+  ++  RL+SL++CFQTDTLGYHLSVL+ +FP GLTMLS+FSG+GGAE+ LHR
Sbjct: 565 LNHTRASEGNVAERLKSLKYCFQTDTLGYHLSVLRPIFPHGLTMLSLFSGLGGAEIALHR 624

Query: 463 LGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDF 522
           LGIK+K V+S+ETSET R+IL+RWW  SGQTG LVQ+EDIQ LT+KK E LI K G  D 
Sbjct: 625 LGIKIKVVVSVETSETKRKILERWWRQSGQTGTLVQLEDIQKLTSKKLEGLISKFGGFDL 684

Query: 523 VICQNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVRSM 574
           VI QN    + +S+ ++             LP  +FS++ E VRV+QR+R M
Sbjct: 685 VIYQNPCSNL-SSRLLAGV----------GLPALEFSVFCECVRVLQRIRGM 725

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356519874|ref|XP_003528594.1| PREDICTED: DNA (cytosine-5)-methyltransferase DRM1-like [Glycine max]

 Score =  574 bits (1479), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 307/591 (51%), Positives = 389/591 (65%), Gaps = 35/591 (5%)

Query: 3   QPKEEPNVMDEGLHIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQISENF 62
           Q KEEP+ +  G+  + R SLLMMNFSV EV+FA+ KLG +A + ELVDFI A QI++  
Sbjct: 114 QAKEEPDELS-GVVDDTRGSLLMMNFSVEEVEFAIHKLGDEASIPELVDFIFALQIAKKL 172

Query: 63  EKETDDAPHDNDGTNEDKSDETLYGTMEITLQLLEMGFSENQVSLAIEKFGSKTPISELA 122
           +KE DD      G   + ++E L+G M  TLQL EMGFSEN+VS AI+K GS+ PISELA
Sbjct: 173 KKEPDDITFTYYGRGNEVTNEKLFGIMAKTLQLFEMGFSENEVSSAIDKLGSEAPISELA 232

Query: 123 DKIFSGQIFLD-------------------TPRSRSYDTVKVKTEYCSPDVVSQSRKMNT 163
           + IF+ Q  +D                    P    Y T +VK E  S +   QS ++N 
Sbjct: 233 NFIFAEQNGIDYVMEYKFPTTSTYSVGIKEEPEMDLYGTAEVKVEGFSHEP-PQSSQVNL 291

Query: 164 SETSRGKRPKEEYFDDFSNSTSQFQHVDFQENRKGKRPKQESLDDSSSFLDSSW-EEKVK 222
            ET      KEE   D   S    Q++D  EN +GKRPK E  DD  + L+ SW EE+V 
Sbjct: 292 EETYNDDMVKEEEGIDAFPSNVSDQYLDVVENGRGKRPKYEHDDDPVNCLEPSWVEERVD 351

Query: 223 PNSSRYGMQQAFNSNPCRSINKVVAQPPYFFYGNVVDVSIDCWVKMSHFLYSLEPEFVNS 282
              +   M +    NP R ++ V A+PP+F +GNV ++S D W KMS FLY +EPEF N+
Sbjct: 352 AVVAE--MSRHPKPNPSRCLSSVAAKPPFFLFGNVSNISYDSWTKMSQFLYGIEPEFANA 409

Query: 283 QYFSALSRREGYLHNLPTTNRFHIPPEPPMTIQDAIPHTKKWWPSWDTRKHLSCINSGTS 342
           Q FSA+ R EGY+HNLP  NRFHI P+PPMTI+DA+P TKKWWP WD+RK LS I   T+
Sbjct: 410 QSFSAMDRIEGYIHNLPVENRFHILPKPPMTIEDAMPQTKKWWPPWDSRKLLSSIYCETN 469

Query: 343 GISQLCERFEKLLRDSRGVLSSQQQRDILHRSEKLNLVWVGAYKLGPVDPEHIELILGYP 402
           GI+Q C+R    L DS GVL+S+QQ+DIL    +LNLVW+G +KLGPV+PE +ELILGYP
Sbjct: 470 GIAQTCDRLGNFLADSGGVLTSEQQKDILRYCRRLNLVWIGKFKLGPVEPEQLELILGYP 529

Query: 403 SNHTQAAGNSLTARLESLRHCFQTDTLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHR 462
            NHT+A   ++  RL+SL++CFQTDTLGYHLSVL+ +FP GLTMLS+FSG+GGAE+ LHR
Sbjct: 530 LNHTRATEGNVAERLKSLKYCFQTDTLGYHLSVLRPIFPHGLTMLSLFSGLGGAEIALHR 589

Query: 463 LGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDF 522
           L IK+K V+S+ETSET R+IL++WW  SGQTG LVQIEDIQ LT+KK E LI K G  D 
Sbjct: 590 LAIKIKAVVSVETSETKRKILEKWWRQSGQTGTLVQIEDIQKLTSKKLEGLISKFGGFDL 649

Query: 523 VICQNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVRS 573
           VI QN     P S   S     ++ A    L   DFS++ E VRV+QRVR 
Sbjct: 650 VIYQN-----PCSYSSS-----RLQA-GVGLSALDFSVFCECVRVLQRVRG 689

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357479111|ref|XP_003609841.1| DNA (cytosine-5)-methyltransferase DRM2 [Medicago truncatula] gi|355510896|gb|AES92038.1| DNA (cytosine-5)-methyltransferase DRM2 [Medicago truncatula]

 Score =  554 bits (1428), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 301/593 (50%), Positives = 393/593 (66%), Gaps = 40/593 (6%)

Query: 3   QPKEEPNVMDEGLHIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQISENF 62
           QPKEE + + E +  + R +LLMMNFS  EV+FA+ KLG  APV ELVDFI AAQI++  
Sbjct: 151 QPKEEVDEIFEDIE-DSRGTLLMMNFSAEEVEFAIRKLGNKAPVPELVDFIFAAQIAKKM 209

Query: 63  EKETDDAPHDNDGTNEDK-SDETLYGTMEITLQLLEMGFSENQVSLAIEKFGSKTPISEL 121
           +KE  +         E + S+E L+G M  TLQL EMGFSEN++S A++K G   PISEL
Sbjct: 210 KKEEAEEDDIKCYVREKEISNEQLFGIMAKTLQLFEMGFSENEISSAVDKLGPDVPISEL 269

Query: 122 ADKIFSGQIFLD------------------TPRSRSYDTVKVKTEYCSPDVVSQSRKMNT 163
           A+ IF+ Q  ++                    +S  Y T +VK E  S +  SQSR++N 
Sbjct: 270 ANFIFAEQNGIEYVMEYKYPSGPSYSWIKEEEQSDMYGTAEVKVEDFSHEP-SQSRQVNL 328

Query: 164 SETSRGKRPKEE-YFDDFSNSTSQFQHVDFQENRKGKRPKQESLDDSSSFLDSSWEEKVK 222
            ET  G+R KEE Y D+F +         F EN + KRPK E  D+S+S LD  W E++ 
Sbjct: 329 GETGTGERVKEEDYIDEFPDDVKP----GFMENDRNKRPKYEYDDNSNSSLDPYWVEEMV 384

Query: 223 PNSSRYGMQQAFNSNPCRSINKVVAQPPYFFYGNVVDVSIDCWVKMSHFLYSLEPEFVNS 282
            ++    M +   S P RS++ V A+PP+F +GNV +++ D W KMS FLY +EPEFVN+
Sbjct: 385 -DTVVATMSRRNKSTPSRSLSSVAAKPPFFLFGNVSNITYDSWKKMSQFLYCIEPEFVNT 443

Query: 283 QYFSALSRREGYLHNLPTTNRFHIPPEPPMTIQDAIPHTKKWWPSWDTRKHLSCINSGTS 342
           + FSAL+R EGY+HNLPT NRF I P+PPMTI+DAIP TKKWWP WD+RK L+C    T 
Sbjct: 444 ELFSALNRIEGYIHNLPTENRFQILPKPPMTIEDAIPRTKKWWPPWDSRKKLNCNYCETG 503

Query: 343 GISQLCERFEKLLRDSRGVLSSQQQRDILHRSEKLNLVWVGAYKLGPVDPEHIELILGYP 402
           GI+QLC+R  + L +S G+L+SQQQ+DIL     LNLVW G YKLGP++PEH++ ILGYP
Sbjct: 504 GITQLCDRLGRALANSGGILTSQQQKDILRYCRGLNLVWTGKYKLGPIEPEHLDHILGYP 563

Query: 403 SNHTQAAGNSLTARLESLRHCFQTDTLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHR 462
            NHT+     LT RL+ L+H FQTDTLGYHLSVLK +FP G+T+LS+FSGIGGAEV LHR
Sbjct: 564 LNHTRTDECDLTERLQLLKHSFQTDTLGYHLSVLKPIFPTGVTLLSIFSGIGGAEVALHR 623

Query: 463 LGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDF 522
           LGIK+K ++S+ETS T R+IL++WW SSGQ+G LVQIE+IQ LT+KKFE+LI+  G  D 
Sbjct: 624 LGIKIKALVSVETSATKRKILEKWWRSSGQSGTLVQIEEIQKLTSKKFENLINNFGVFDL 683

Query: 523 VICQNSVPQ-IPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVRSM 574
           VI QN   Q I    Q+              L   +FS + E VR++QRVR++
Sbjct: 684 VIYQNPCSQPIVRPHQVG------------GLSAVEFSAFCESVRILQRVRAL 724

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	576
TAIR|locus:2089075	710	DRM3 "domains rearranged methy	0.678	0.550	0.478	1.2e-123
TAIR|locus:2222627	626	DRM2 "domains rearranged methy	0.565	0.520	0.430	1.2e-79
TAIR|locus:2150991	624	DRM1 "domains rearranged methy	0.562	0.519	0.4	9.7e-74

TAIR|locus:2089075 DRM3 "domains rearranged methyltransferase 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 965 (344.8 bits), Expect = 1.2e-123, Sum P(2) = 1.2e-123
 Identities = 200/418 (47%), Positives = 267/418 (63%)

Query:   162 NTSETSRGKRPKEEYFDDFSNSTSQFQHVDFQENRKGKRPKQEXXXXXXXXXXXXW-EEK 220
             N  ETSRGKRPK+E  D+  N+  + ++  + +  +GKR + E            W +++
Sbjct:   314 NVGETSRGKRPKDE--DE--NAYPE-EYTGYDD--RGKRLRPEDMGDSSSFMETPWMQDE 366

Query:   221 VKPNSSRYGMQQAFNSNPCRSINKVVAQPPYFFYGNVVDVSIDCWVKMSHFLYSLEPEFV 280
              K N+  Y           +S+   VA+ PYFFYG + ++S   W K+S FL+ + PE V
Sbjct:   367 WKDNT--YEFPSVMQPRLSQSLGPKVARRPYFFYGQLGELSPSWWSKISGFLFGIHPEHV 424

Query:   281 NSQYFSALSRREGYLHNLPTTNRFHIPPEPPMTIQDAIPHTKKWWPSWDTRKHLSCINSG 340
             +++  SAL R EGYLHNLPT NRF+  P P +TIQDA+PH + WWP WD RKH    NSG
Sbjct:   425 DTRLCSALRRTEGYLHNLPTVNRFNTLPNPRLTIQDAMPHMRSWWPQWDIRKHF---NSG 481

Query:   341 T-SGISQ---LCERFEKLLRDSRGVLSSQQQRDILHRSEKLNLVWVGAYKLGPVDPEHIE 396
             T S +     LCER  + + + +G  + Q Q  IL      NL+W+    L P++PEH+E
Sbjct:   482 TCSNMKDATLLCERIGRRIAECKGKPTQQDQTLILRHCHTSNLIWIAPNILSPLEPEHLE 541

Query:   397 LILGYPSNHTQAAGNSLTARLESLRHCFQTDTLGYHLSVLKSMFPGGLTMLSVFSGIGGA 456
              I+GYP NHT   G  L  RL+   +CFQTDTLGYHLSVLKSMFP GLT+LS+FSGIGGA
Sbjct:   542 CIMGYPMNHTNIGGGRLAERLKLFDYCFQTDTLGYHLSVLKSMFPQGLTVLSLFSGIGGA 601

Query:   457 EVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHK 516
             E+ L RLGI LKGV+S+E+   +R ILKRWW++SGQTGELVQIE+I++LT K+ E+L+ +
Sbjct:   602 EIALDRLGIHLKGVVSVESCGLSRNILKRWWQTSGQTGELVQIEEIKSLTAKRLETLMQR 661

Query:   517 LGSIDFVICQNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVRSM 574
              G  DFVICQN    +  SK+ISNS+    A E      FD++L+ EF RV +RVR M
Sbjct:   662 FGGFDFVICQNPSTPLDLSKEISNSE----ACE------FDYTLFNEFARVTKRVRDM 709

GO:0005634 "nucleus" evidence=ISM

GO:0008168 "methyltransferase activity" evidence=ISS

GO:0006306 "DNA methylation" evidence=IMP

TAIR|locus:2222627 DRM2 "domains rearranged methyltransferase 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 727 (261.0 bits), Expect = 1.2e-79, Sum P(2) = 1.2e-79
 Identities = 146/339 (43%), Positives = 205/339 (60%)

Query:   240 RSINKVVAQPPYFFYGNVVDVSIDCWVKMSHFLYSLEPEFVNSQYFSALSRREGYLHNLP 299
             RS+ ++   PP+F+Y NV       W  +S  L+ + PEFV+S+YF   +R+ GY+HNLP
Sbjct:   297 RSLPELARGPPFFYYENVALTPKGVWETISRHLFEIPPEFVDSKYFCVAARKRGYIHNLP 356

Query:   300 TTNRFHIPPEPPMTIQDAIPHTKKWWPSWDTRKHLSCINSGTSGISQLCERFEKLLR--D 357
               NRF I P P  TI DA P +K+WWP WD R  L+CI + T G +QL  R    L   +
Sbjct:   357 INNRFQIQPPPKYTIHDAFPLSKRWWPEWDKRTKLNCILTCT-GSAQLTNRIRVALEPYN 415

Query:   358 SRGVLSSQQQRDILHRSEKLNLVWVGAYKLGPVDPEHIELILGYPSNHTQAAGNSLTARL 417
                      QR ++ + +K NLVWVG  K  P++P+ +E ILG+P NHT+  G S T R 
Sbjct:   416 EEPEPPKHVQRYVIDQCKKWNLVWVGKNKAAPLEPDEMESILGFPKNHTRGGGMSRTERF 475

Query:   418 ESLRHCFQTDTLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSE 477
             +SL + FQ DT+ YHLSVLK +FP G+ +LS+F+GIGG EV LHRL IK+K V+S+E S+
Sbjct:   476 KSLGNSFQVDTVAYHLSVLKPIFPHGINVLSLFTGIGGGEVALHRLQIKMKLVVSVEISK 535

Query:   478 TNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDFVICQNSVPQIPNSKQ 537
              NR ILK +WE + QTGEL++  DIQ LT    E L+ K G  D VI  +    +    +
Sbjct:   536 VNRNILKDFWEQTNQTGELIEFSDIQHLTNDTIEGLMEKYGGFDLVIGGSPCNNLAGGNR 595

Query:   538 ISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVRSMKR 576
             +S     ++  E D       SL++E+ R+++ VR+  R
Sbjct:   596 VS-----RVGLEGDQS-----SLFFEYCRILEVVRARMR 624

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006306 "DNA methylation" evidence=IEA;IMP

GO:0008170 "N-methyltransferase activity" evidence=ISS

GO:0016458 "gene silencing" evidence=IMP

GO:0051567 "histone H3-K9 methylation" evidence=IGI

GO:0005515 "protein binding" evidence=IPI

GO:0050832 "defense response to fungus" evidence=IGI

TAIR|locus:2150991 DRM1 "domains rearranged methylase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 672 (241.6 bits), Expect = 9.7e-74, Sum P(2) = 9.7e-74
 Identities = 134/335 (40%), Positives = 201/335 (60%)

Query:   242 INKVVAQPPYFFYGNVVDVSIDCWVKMSHFLYSLEPEFVNSQYFSALSRREGYLHNLPTT 301
             I  +   PP+F+Y NV       W K+S  LY + PEFV+S++F A +R+ GY+HNLP  
Sbjct:   297 IPDIARGPPFFYYENVAMTPKGVWAKISSHLYDIVPEFVDSKHFCAAARKRGYIHNLPIQ 356

Query:   302 NRFHIPPEPPMTIQDAIPHTKKWWPSWDTRKHLSCINSGTSGISQLCERFEKLLRDSRGV 361
             NRF I P    TIQ+A P TK+WWPSWD R  L+C+ +  +  S+L E+  + L    G 
Sbjct:   357 NRFQIQPPQHNTIQEAFPLTKRWWPSWDGRTKLNCLLTCIAS-SRLTEKIREALERYDGE 415

Query:   362 LSSQQQRDILHRSEKLNLVWVGAYKLGPVDPEHIELILGYPSNHTQAAGNSLTARLESLR 421
                  Q+ +++  +K NLVWVG  KL P+D + +E +LG+P +HT+  G S T R +SL 
Sbjct:   416 TPLDVQKWVMYECKKWNLVWVGKNKLAPLDADEMEKLLGFPRDHTRGGGISTTDRYKSLG 475

Query:   422 HCFQTDTLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRR 481
             + FQ DT+ YHLSVLK +FP G+ +LS+F+GIGG EV LHRL IK+  V+S+E S+ NR 
Sbjct:   476 NSFQVDTVAYHLSVLKPLFPNGINVLSLFTGIGGGEVALHRLQIKMNVVVSVEISDANRN 535

Query:   482 ILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDFVICQNSVPQIPNSKQISNS 541
             IL+ +WE + Q G L + +D+Q L     E L+ + G  D VI  +     P +     +
Sbjct:   536 ILRSFWEQTNQKGILREFKDVQKLDDNTIERLMDEYGGFDLVIGGS-----PCNNLAGGN 590

Query:   542 KDPKMAAESDNLPDFDFSLYYEFVRVVQRVRSMKR 576
             +  ++    ++      SL++++ R+++ VR   R
Sbjct:   591 RHHRVGLGGEHS-----SLFFDYCRILEAVRRKAR 620

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006306 "DNA methylation" evidence=IEA;IMP

GO:0006346 "methylation-dependent chromatin silencing" evidence=IMP

GO:0016458 "gene silencing" evidence=IMP

GO:0003886 "DNA (cytosine-5-)-methyltransferase activity" evidence=IMP

GO:0051567 "histone H3-K9 methylation" evidence=IGI

GO:0050832 "defense response to fungus" evidence=IGI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.1.1.37	LOW CONFIDENCE prediction!
3rd Layer	2.1.1	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00019681001 SubName- Full=Chromosome chr5 scaffold_2, whole genome shotgun sequence; (691 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	576
COG0270	328	Dcm Site-specific DNA methylase [DNA replication,	99.91
PF00145	335	DNA_methylase: C-5 cytosine-specific DNA methylase	99.91
PRK10458	467	DNA cytosine methylase; Provisional	99.88
TIGR00675	315	dcm DNA-methyltransferase (dcm). All proteins in t	99.86
cd00315	275	Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth	99.86
KOG0919	338	consensus C-5 cytosine-specific DNA methylase [Tra	99.28
cd00315	275	Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth	99.24
PRK10458	467	DNA cytosine methylase; Provisional	98.61
PF00145	335	DNA_methylase: C-5 cytosine-specific DNA methylase	98.44
TIGR00675	315	dcm DNA-methyltransferase (dcm). All proteins in t	97.99
PF13659	117	Methyltransf_26: Methyltransferase domain; PDB: 3G	97.89
COG0270	328	Dcm Site-specific DNA methylase [DNA replication,	97.62
TIGR03704	251	PrmC_rel_meth putative protein-(glutamine-N5) meth	97.45
PF03602	183	Cons_hypoth95: Conserved hypothetical protein 95;	97.44
COG2520	341	Predicted methyltransferase [General function pred	97.35
TIGR00095	189	RNA methyltransferase, RsmD family. This model rep	97.33
PF02475	200	Met_10: Met-10+ like-protein; InterPro: IPR003402	97.31
PRK10909	199	rsmD 16S rRNA m(2)G966-methyltransferase; Provisio	97.21
PRK15128	396	23S rRNA m(5)C1962 methyltransferase; Provisional	97.18
PF09445	163	Methyltransf_15: RNA cap guanine-N2 methyltransfer	97.02
PHA03412	241	putative methyltransferase; Provisional	96.95
PF13847	152	Methyltransf_31: Methyltransferase domain; PDB: 3T	96.87
smart00165	37	UBA Ubiquitin associated domain. Present in Rad23,	96.84
TIGR01177	329	conserved hypothetical protein TIGR01177. This fam	96.82
TIGR02085	374	meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer	96.77
PRK03522	315	rumB 23S rRNA methyluridine methyltransferase; Rev	96.76
PF05175	170	MTS: Methyltransferase small domain; InterPro: IPR	96.71
TIGR00446	264	nop2p NOL1/NOP2/sun family putative RNA methylase.	96.68
PF00627	37	UBA: UBA/TS-N domain; InterPro: IPR000449 UBA doma	96.58
PRK09328	275	N5-glutamine S-adenosyl-L-methionine-dependent met	96.52
PHA03411	279	putative methyltransferase; Provisional	96.39
PRK05031	362	tRNA (uracil-5-)-methyltransferase; Validated	96.38
cd00194	38	UBA Ubiquitin Associated domain. The UBA domain is	96.35
TIGR00537	179	hemK_rel_arch HemK-related putative methylase. The	96.33
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	96.28
TIGR00479	431	rumA 23S rRNA (uracil-5-)-methyltransferase RumA.	96.28
PRK14904	445	16S rRNA methyltransferase B; Provisional	96.28
smart00650	169	rADc Ribosomal RNA adenine dimethylases.	96.25
COG0742	187	N6-adenine-specific methylase [DNA replication, re	96.17
KOG0944	763	consensus Ubiquitin-specific protease UBP14 [Postt	96.17
COG2263	198	Predicted RNA methylase [Translation, ribosomal st	96.15
PRK10901	427	16S rRNA methyltransferase B; Provisional	96.14
PRK13168	443	rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe	96.13
PRK14902	444	16S rRNA methyltransferase B; Provisional	96.07
TIGR03533	284	L3_gln_methyl protein-(glutamine-N5) methyltransfe	96.02
PRK11805	307	N5-glutamine S-adenosyl-L-methionine-dependent met	95.89
PRK14967	223	putative methyltransferase; Provisional	95.88
PRK14901	434	16S rRNA methyltransferase B; Provisional	95.79
PF00627	37	UBA: UBA/TS-N domain; InterPro: IPR000449 UBA doma	95.77
cd02440	107	AdoMet_MTases S-adenosylmethionine-dependent methy	95.74
smart00165	37	UBA Ubiquitin associated domain. Present in Rad23,	95.73
PF10672	286	Methyltrans_SAM: S-adenosylmethionine-dependent me	95.68
KOG0919	338	consensus C-5 cytosine-specific DNA methylase [Tra	95.67
PF05958	352	tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas	95.66
PRK04338	382	N(2),N(2)-dimethylguanosine tRNA methyltransferase	95.65
cd00194	38	UBA Ubiquitin Associated domain. The UBA domain is	95.63
TIGR03534	251	RF_mod_PrmC protein-(glutamine-N5) methyltransfera	95.61
COG2265	432	TrmA SAM-dependent methyltransferases related to t	95.61
PRK14903	431	16S rRNA methyltransferase B; Provisional	95.56
COG1092	393	Predicted SAM-dependent methyltransferases [Genera	95.49
TIGR02143	353	trmA_only tRNA (uracil-5-)-methyltransferase. This	95.44
TIGR02987	524	met_A_Alw26 type II restriction m6 adenine DNA met	95.26
PRK14896	258	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	95.24
TIGR02752	231	MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me	94.86
TIGR00308	374	TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi	94.6
TIGR00563	426	rsmB ribosomal RNA small subunit methyltransferase	94.59
TIGR00536	284	hemK_fam HemK family putative methylases. The gene	94.55
PF01170	179	UPF0020: Putative RNA methylase family UPF0020; In	94.52
PRK00274	272	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	94.32
COG5207	749	UBP14 Isopeptidase T [Posttranslational modificati	94.32
PRK14968	188	putative methyltransferase; Provisional	94.3
COG4123	248	Predicted O-methyltransferase [General function pr	94.23
TIGR00755	253	ksgA dimethyladenosine transferase. Alternate name	94.22
PRK09489	342	rsmC 16S ribosomal RNA m2G1207 methyltransferase;	94.2
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	94.15
TIGR00080	215	pimt protein-L-isoaspartate(D-aspartate) O-methylt	94.13
TIGR00406	288	prmA ribosomal protein L11 methyltransferase. Ribo	94.13
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	94.12
TIGR02021	219	BchM-ChlM magnesium protoporphyrin O-methyltransfe	94.1
KOG3420	185	consensus Predicted RNA methylase [Translation, ri	94.06
TIGR00138	181	gidB 16S rRNA methyltransferase GidB. GidB (glucos	93.87
COG2890	280	HemK Methylase of polypeptide chain release factor	93.79
PF09288	55	UBA_3: Fungal ubiquitin-associated domain ; InterP	93.55
PRK11207	197	tellurite resistance protein TehB; Provisional	93.55
PF02384	311	N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T	93.51
PRK14966	423	unknown domain/N5-glutamine S-adenosyl-L-methionin	93.31
PRK11036	255	putative S-adenosyl-L-methionine-dependent methylt	93.03
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	92.98
PRK07402	196	precorrin-6B methylase; Provisional	92.94
PTZ00338	294	dimethyladenosine transferase-like protein; Provis	92.88
PLN02396	322	hexaprenyldihydroxybenzoate methyltransferase	92.82
PRK08287	187	cobalt-precorrin-6Y C(15)-methyltransferase; Valid	92.81
PRK00312	212	pcm protein-L-isoaspartate O-methyltransferase; Re	92.73
PRK07580	230	Mg-protoporphyrin IX methyl transferase; Validated	92.63
KOG2904	328	consensus Predicted methyltransferase [General fun	92.63
COG2264	300	PrmA Ribosomal protein L11 methylase [Translation,	92.25
PF07499	47	RuvA_C: RuvA, C-terminal domain; InterPro: IPR0111	92.21
PLN02244	340	tocopherol O-methyltransferase	92.14
KOG2730	263	consensus Methylase [General function prediction o	91.89
PRK00377	198	cbiT cobalt-precorrin-6Y C(15)-methyltransferase;	91.81
PRK15001	378	SAM-dependent 23S ribosomal RNA mG1835 methyltrans	91.77
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	91.61
COG2227	243	UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-	91.48
PLN02585	315	magnesium protoporphyrin IX methyltransferase	91.45
PRK00107	187	gidB 16S rRNA methyltransferase GidB; Reviewed	91.35
PF06325	295	PrmA: Ribosomal protein L11 methyltransferase (Prm	91.09
COG0116	381	Predicted N6-adenine-specific DNA methylase [DNA r	90.95
KOG1227	351	consensus Putative methyltransferase [General func	90.38
TIGR00478	228	tly hemolysin TlyA family protein. Hemolysins are	90.23
TIGR00477	195	tehB tellurite resistance protein TehB. Part of a	90.12
PRK00121	202	trmB tRNA (guanine-N(7)-)-methyltransferase; Revie	90.06
PF00398	262	RrnaAD: Ribosomal RNA adenine dimethylase; InterPr	90.01
KOG2561	568	consensus Adaptor protein NUB1, contains UBA domai	89.98
TIGR03840	213	TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d	89.82
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	89.69
PRK13942	212	protein-L-isoaspartate O-methyltransferase; Provis	89.59
PRK13944	205	protein-L-isoaspartate O-methyltransferase; Provis	89.3
PRK11188	209	rrmJ 23S rRNA methyltransferase J; Provisional	89.25
TIGR02072	240	BioC biotin biosynthesis protein BioC. This enzyme	89.2
PRK12335	287	tellurite resistance protein TehB; Provisional	88.8
PF07499	47	RuvA_C: RuvA, C-terminal domain; InterPro: IPR0111	88.76
PF13649	101	Methyltransf_25: Methyltransferase domain; PDB: 3B	88.65
PRK10742	250	putative methyltransferase; Provisional	88.47
COG1041	347	Predicted DNA modification methylase [DNA replicat	88.28
PRK10258	251	biotin biosynthesis protein BioC; Provisional	88.05
PF02005	377	TRM: N2,N2-dimethylguanosine tRNA methyltransferas	87.92
PTZ00098	263	phosphoethanolamine N-methyltransferase; Provision	87.9
PRK13255	218	thiopurine S-methyltransferase; Reviewed	87.84
PRK05134	233	bifunctional 3-demethylubiquinone-9 3-methyltransf	87.83
PLN02233	261	ubiquinone biosynthesis methyltransferase	87.82
TIGR00091	194	tRNA (guanine-N(7)-)-methyltransferase. In E. coli	87.82
TIGR01934	223	MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis	87.51
PRK05785	226	hypothetical protein; Provisional	87.43
PRK00811	283	spermidine synthase; Provisional	87.19
PRK11933	470	yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF;	87.18
PLN02781	234	Probable caffeoyl-CoA O-methyltransferase	86.69
TIGR01983	224	UbiG ubiquinone biosynthesis O-methyltransferase.	86.64
PF01555	231	N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th	86.23
PRK00216	239	ubiE ubiquinone/menaquinone biosynthesis methyltra	86.04
PRK01683	258	trans-aconitate 2-methyltransferase; Provisional	85.27
PF01189	283	Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR	85.2
PLN02672	1082	methionine S-methyltransferase	85.1
PF02086	260	MethyltransfD12: D12 class N6 adenine-specific DNA	84.93
PRK13943	322	protein-L-isoaspartate O-methyltransferase; Provis	84.77
PRK14103	255	trans-aconitate 2-methyltransferase; Provisional	84.59
TIGR02081	194	metW methionine biosynthesis protein MetW. This pr	83.6
PRK08317	241	hypothetical protein; Provisional	83.14
PRK04148	134	hypothetical protein; Provisional	83.08
PF03848	192	TehB: Tellurite resistance protein TehB; InterPro:	83.05
PF01209	233	Ubie_methyltran: ubiE/COQ5 methyltransferase famil	82.9
COG2226	238	UbiE Methylase involved in ubiquinone/menaquinone	82.87
PRK11727	321	23S rRNA mA1618 methyltransferase; Provisional	82.56
PLN02336	475	phosphoethanolamine N-methyltransferase	82.45
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	81.89
TIGR00417	270	speE spermidine synthase. the SpeE subunit of sper	81.54
PF01135	209	PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl	81.47
KOG2561	568	consensus Adaptor protein NUB1, contains UBA domai	81.16
PRK06202	232	hypothetical protein; Provisional	80.93
TIGR00438	188	rrmJ cell division protein FtsJ.	80.75
PF08241	95	Methyltransf_11: Methyltransferase domain; InterPr	80.59

>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]

Probab=99.91  E-value=5.1e-25  Score=228.83  Aligned_cols=109  Identities=19%  Similarity=0.343  Sum_probs=95.5

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 008149          442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  521 (576)
Q Consensus       442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~D  521 (576)
                      ..++++||||||||+++||+++||  ++++++|||+.|++||++++.     ...+...||.++..+.+...     ++|
T Consensus         2 ~~~~~idLFsG~GG~~lGf~~agf--~~~~a~Eid~~a~~ty~~n~~-----~~~~~~~di~~~~~~~~~~~-----~~D   69 (328)
T COG0270           2 EKMKVIDLFAGIGGLSLGFEEAGF--EIVFANEIDPPAVATYKANFP-----HGDIILGDIKELDGEALRKS-----DVD   69 (328)
T ss_pred             CCceEEeeccCCchHHHHHHhcCC--eEEEEEecCHHHHHHHHHhCC-----CCceeechHhhcChhhcccc-----CCC
Confidence            358999999999999999999997  679999999999999987653     24467799999998877532     799


Q ss_pred             EEEecCCCCCccccCCCCCCCCccccccCCCCCCCCcchHHHHHHHHHHhhcc
Q 008149          522 FVICQNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVRSM  574 (576)
Q Consensus       522 LVIGGpPCQ~FS~agr~~~~~~~~~aG~R~Gl~D~Rs~Lf~EyvRIV~~vK~~  574 (576)
                      +|+||||||+||.+            |+|.|++|+|++||++|+|+|+.++|.
T Consensus        70 vligGpPCQ~FS~a------------G~r~~~~D~R~~L~~~~~r~I~~~~P~  110 (328)
T COG0270          70 VLIGGPPCQDFSIA------------GKRRGYDDPRGSLFLEFIRLIEQLRPK  110 (328)
T ss_pred             EEEeCCCCcchhhc------------CcccCCcCccceeeHHHHHHHHhhCCC
Confidence            99999999999976            466789999999999999999999984

>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2

Probab=99.91  E-value=6.8e-25  Score=220.36  Aligned_cols=105  Identities=22%  Similarity=0.395  Sum_probs=87.4

Q ss_pred             CcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCccEE
Q 008149          444 LTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDFV  523 (576)
Q Consensus       444 l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~DLV  523 (576)
                      |||+||||||||+++||+++||  ++++|+|+|+.|+++|+.||.       .+..+||++++.+.|+.      ++|||
T Consensus         1 ~~~~dlFsG~Gg~~~g~~~ag~--~~~~a~e~~~~a~~~y~~N~~-------~~~~~Di~~~~~~~l~~------~~D~l   65 (335)
T PF00145_consen    1 MKVIDLFSGIGGFSLGLEQAGF--EVVWAVEIDPDACETYKANFP-------EVICGDITEIDPSDLPK------DVDLL   65 (335)
T ss_dssp             EEEEEET-TTTHHHHHHHHTTE--EEEEEEESSHHHHHHHHHHHT-------EEEESHGGGCHHHHHHH------T-SEE
T ss_pred             CcEEEEccCccHHHHHHHhcCc--EEEEEeecCHHHHHhhhhccc-------ccccccccccccccccc------cceEE
Confidence            5899999999999999999996  679999999999999998874       36789999999886642      59999


Q ss_pred             EecCCCCCccccCCCCCCCCccccccCCCCCCCCcchHHHHHHHHHHhhccc
Q 008149          524 ICQNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVRSMK  575 (576)
Q Consensus       524 IGGpPCQ~FS~agr~~~~~~~~~aG~R~Gl~D~Rs~Lf~EyvRIV~~vK~~~  575 (576)
                      +||||||+||.+|            ++.|++|+|+.||++|+|+|+++||..
T Consensus        66 ~ggpPCQ~fS~ag------------~~~~~~d~r~~L~~~~~~~v~~~~Pk~  105 (335)
T PF00145_consen   66 IGGPPCQGFSIAG------------KRKGFDDPRNSLFFEFLRIVKELKPKY  105 (335)
T ss_dssp             EEE---TTTSTTS------------THHCCCCHTTSHHHHHHHHHHHHS-SE
T ss_pred             EeccCCceEeccc------------cccccccccchhhHHHHHHHhhccceE
Confidence            9999999999875            345789999999999999999999853

1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....

>PRK10458 DNA cytosine methylase; Provisional

Probab=99.88  E-value=7.9e-23  Score=222.04  Aligned_cols=125  Identities=17%  Similarity=0.288  Sum_probs=97.8

Q ss_pred             CCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHH--------Hhh
Q 008149          443 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFE--------SLI  514 (576)
Q Consensus       443 ~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie--------~l~  514 (576)
                      ++++|||||||||+++||+++|+  ++|+++|+|+.|++||+++|..  .+......+||++++...+.        ..+
T Consensus        88 ~~~~iDLFsGiGGl~lGfe~aG~--~~v~a~Eid~~A~~TY~~N~~~--~p~~~~~~~DI~~i~~~~~~~~~~~~~~~~~  163 (467)
T PRK10458         88 AFRFIDLFAGIGGIRRGFEAIGG--QCVFTSEWNKHAVRTYKANWYC--DPATHRFNEDIRDITLSHKEGVSDEEAAEHI  163 (467)
T ss_pred             CceEEEeCcCccHHHHHHHHcCC--EEEEEEechHHHHHHHHHHcCC--CCccceeccChhhCccccccccchhhhhhhh
Confidence            68999999999999999999998  5799999999999999998732  23344567899999854321        111


Q ss_pred             -hccCCccEEEecCCCCCccccCCCCCCCCccccccCCCCC-CCCcchHHHHHHHHHHhhccc
Q 008149          515 -HKLGSIDFVICQNSVPQIPNSKQISNSKDPKMAAESDNLP-DFDFSLYYEFVRVVQRVRSMK  575 (576)
Q Consensus       515 -~~~g~~DLVIGGpPCQ~FS~agr~~~~~~~~~aG~R~Gl~-D~Rs~Lf~EyvRIV~~vK~~~  575 (576)
                       ...+++|||+||||||+||.+|+.+..    -.|.+.|+. |+|++||++|+|+|++++|.+
T Consensus       164 ~~~~p~~DvL~gGpPCQ~FS~AG~~k~~----~~gr~~g~~~d~rg~Lf~~~~rii~~~kPk~  222 (467)
T PRK10458        164 RQHIPDHDVLLAGFPCQPFSLAGVSKKN----SLGRAHGFECETQGTLFFDVARIIDAKRPAI  222 (467)
T ss_pred             hccCCCCCEEEEcCCCCccchhcccccc----cccccccccCCccccHHHHHHHHHHHhCCCE
Confidence             134689999999999999999754211    013445775 899999999999999999864

>TIGR00675 dcm DNA-methyltransferase (dcm)

Probab=99.86  E-value=2.5e-22  Score=207.82  Aligned_cols=103  Identities=17%  Similarity=0.361  Sum_probs=89.0

Q ss_pred             ccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCccEEEe
Q 008149          446 MLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDFVIC  525 (576)
Q Consensus       446 VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~DLVIG  525 (576)
                      ||||||||||+++||+++||  ++++++|+|+.|+++|+.+|.     + .+..+||++++.+++       +++|||+|
T Consensus         1 vidLF~G~GG~~~Gl~~aG~--~~~~a~e~~~~a~~ty~~N~~-----~-~~~~~Di~~~~~~~~-------~~~dvl~g   65 (315)
T TIGR00675         1 FIDLFAGIGGIRLGFEQAGF--KCVFASEIDKYAQKTYEANFG-----N-KVPFGDITKISPSDI-------PDFDILLG   65 (315)
T ss_pred             CEEEecCccHHHHHHHHcCC--eEEEEEeCCHHHHHHHHHhCC-----C-CCCccChhhhhhhhC-------CCcCEEEe
Confidence            68999999999999999998  569999999999999987653     3 345789999986543       57999999


Q ss_pred             cCCCCCccccCCCCCCCCccccccCCCCCCCCcchHHHHHHHHHHhhccc
Q 008149          526 QNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVRSMK  575 (576)
Q Consensus       526 GpPCQ~FS~agr~~~~~~~~~aG~R~Gl~D~Rs~Lf~EyvRIV~~vK~~~  575 (576)
                      |||||+||.+|            ++.|++|+|+.||++|+|+|++++|.+
T Consensus        66 g~PCq~fS~ag------------~~~~~~d~r~~L~~~~~r~i~~~~P~~  103 (315)
T TIGR00675        66 GFPCQPFSIAG------------KRKGFEDTRGTLFFEIVRILKEKKPKF  103 (315)
T ss_pred             cCCCcccchhc------------ccCCCCCchhhHHHHHHHHHhhcCCCE
Confidence            99999999764            456788999999999999999999853

All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology

Probab=99.86  E-value=2.8e-22  Score=203.74  Aligned_cols=106  Identities=19%  Similarity=0.360  Sum_probs=91.9

Q ss_pred             CcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCccEE
Q 008149          444 LTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDFV  523 (576)
Q Consensus       444 l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~DLV  523 (576)
                      ++|+||||||||+++||+++|+  ++++++|+|+.|+++|+++|..      .++.+||++++..++      .+++|+|
T Consensus         1 ~~v~dLFsG~Gg~~~gl~~~G~--~~v~a~e~~~~a~~~~~~N~~~------~~~~~Di~~~~~~~~------~~~~D~l   66 (275)
T cd00315           1 LRVIDLFAGIGGFRLGLEKAGF--EIVAANEIDKSAAETYEANFPN------KLIEGDITKIDEKDF------IPDIDLL   66 (275)
T ss_pred             CcEEEEccCcchHHHHHHHcCC--EEEEEEeCCHHHHHHHHHhCCC------CCccCccccCchhhc------CCCCCEE
Confidence            5899999999999999999997  5699999999999999987642      256799999987653      3689999


Q ss_pred             EecCCCCCccccCCCCCCCCccccccCCCCCCCCcchHHHHHHHHHHhhccc
Q 008149          524 ICQNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVRSMK  575 (576)
Q Consensus       524 IGGpPCQ~FS~agr~~~~~~~~~aG~R~Gl~D~Rs~Lf~EyvRIV~~vK~~~  575 (576)
                      +||||||+||.+|+            +.|.+|+|+.||++|+|+|++++|.+
T Consensus        67 ~~gpPCq~fS~ag~------------~~~~~d~r~~L~~~~~~~i~~~~P~~  106 (275)
T cd00315          67 TGGFPCQPFSIAGK------------RKGFEDTRGTLFFEIIRILKEKKPKY  106 (275)
T ss_pred             EeCCCChhhhHHhh------------cCCCCCchHHHHHHHHHHHHhcCCCE
Confidence            99999999998753            45778999999999999999999853

Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.

>KOG0919 consensus C-5 cytosine-specific DNA methylase [Transcription]

Probab=99.28  E-value=5e-12  Score=127.14  Aligned_cols=111  Identities=18%  Similarity=0.304  Sum_probs=95.9

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 008149          442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  521 (576)
Q Consensus       442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~D  521 (576)
                      .+++|++|+||+||+..+|+.+.|+-.+|+|+|++..|..+|+.+     ..+.++-..||+.|+.+++..+     ++|
T Consensus         2 ~pLrVlelysg~ggmhyal~~a~ipaqiVaAiDvNtvANevY~~N-----~h~~L~k~~~I~~lt~kefd~l-----~~~   71 (338)
T KOG0919|consen    2 MPLRVLELYSGHGGMHYALEDAQIPAQIVAAIDVNTVANEVYAHN-----YHSNLVKTRNIQSLTVKEFDKL-----QAN   71 (338)
T ss_pred             CceehhhhhhccchhhhhHhhhcCchhhEEEEecchhHHHHHhcC-----cccchhhccccceeeHhhhhhc-----ccc
Confidence            358999999999999999999999999999999999999999754     3355677789999999988765     789


Q ss_pred             EEEecCCCCCccccCCCCCCCCccccccCCCCCCCCcchHHHHHHHHHHhhcc
Q 008149          522 FVICQNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVRSM  574 (576)
Q Consensus       522 LVIGGpPCQ~FS~agr~~~~~~~~~aG~R~Gl~D~Rs~Lf~EyvRIV~~vK~~  574 (576)
                      ++.-.||||+|.-.|            .++.+.|+|+.-|.+.+.+|-+++..
T Consensus        72 m~lMSPpCQPfTRiG------------~q~D~~D~Rs~aflhil~~lP~~q~L  112 (338)
T KOG0919|consen   72 MLLMSPPCQPFTRIG------------LQRDTEDKRSDAFLHILGLLPECQEL  112 (338)
T ss_pred             eEeeCCCCCchhhhc------------ccccccCchhHHHHHHHhhhhhhhhh
Confidence            999999999999554            34457899999999999999887643

>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology

Probab=99.24  E-value=7.2e-12  Score=127.86  Aligned_cols=157  Identities=13%  Similarity=0.166  Sum_probs=110.4

Q ss_pred             CCCCccccccccccch----hhhHhhhhhh----ccCCceeeccccc-Ccccccccccc----cCCCCCCC--CCCCCCC
Q 008149          247 AQPPYFFYGNVVDVSI----DCWVKMSHFL----YSLEPEFVNSQYF-SALSRREGYLH----NLPTTNRF--HIPPEPP  311 (576)
Q Consensus       247 ~~ppfF~~eNV~~~~~----~~w~~Is~fL----~~i~Pe~vds~~f-saa~R~R~y~h----NLP~~nR~--~~~p~~p  311 (576)
                      .+|.+|++|||..+-.    ..+..|.+.|    |.+.+.++|+..| .||+|+|.|+=    .++...-+  |-.+.++
T Consensus       102 ~~P~~~v~ENV~g~~~~~~~~~~~~i~~~l~~~GY~~~~~~l~a~~~GvPQ~R~R~~~ia~~~~~~~~~~~~~p~~~~~~  181 (275)
T cd00315         102 KKPKYFLLENVKGLLTHDNGNTLKVILNTLEELGYNVYWKLLNASDYGVPQNRERVFIIGIRKDLILNFFSPFPKPSEKK  181 (275)
T ss_pred             cCCCEEEEEcCcchhccCchHHHHHHHHHHHhCCcEEEEEEEEHHHcCCCCCCcEEEEEEEeCCCCccccccCCCCCCCC
Confidence            4899999999998865    4566666666    6789999999999 78899999952    22222111  1122346


Q ss_pred             CcccccccCCCccCCCcCcCcccceeeccCcchhHHHHHHHHHHhhccCCCchhhhHHHHHhhcccceeeecccccCCCC
Q 008149          312 MTIQDAIPHTKKWWPSWDTRKHLSCINSGTSGISQLCERFEKLLRDSRGVLSSQQQRDILHRSEKLNLVWVGAYKLGPVD  391 (576)
Q Consensus       312 ~ti~d~lp~~~~~wp~wd~r~klnci~t~~~~~~~l~~~i~~~~~~~~~~~~~~~q~~vl~~c~k~nlvW~g~~~~~ple  391 (576)
                      .|+.|+|     ++..|+.  -..|+++....   ...          .+...            ..-+|..+...+.|+
T Consensus       182 ~t~~d~l-----~~~~~~~--~~~ti~~~~~~---~~~----------~~~~~------------~~~~~~~~~~~R~lT  229 (275)
T cd00315         182 KTLKDIL-----RIRDPDE--PSPTLTASYGK---GTG----------SVHPT------------APDMIGKESNIRRLT  229 (275)
T ss_pred             CcHHHHH-----hhhcCCC--CccceecCCCC---Ccc----------ccccC------------cccccccCCCCCCCC
Confidence            8999999     5567776  45677766421   000          10000            001145677899999


Q ss_pred             hhhHHHHhcCCCCCcccCCCChHHHHHHhhhhhccccchhhhccc
Q 008149          392 PEHIELILGYPSNHTQAAGNSLTARLESLRHCFQTDTLGYHLSVL  436 (576)
Q Consensus       392 ~~E~E~i~GfP~~~T~~~~~~~teR~k~Lg~sf~vdtv~~~lsvL  436 (576)
                      +.|+.||+|||++|+-.++ +.+.++|.+||+..+..++++...+
T Consensus       230 ~rE~arlqgFPd~f~f~g~-~~~~~~~qiGNAVp~~~~~~I~~~i  273 (275)
T cd00315         230 PRECARLQGFPDDFEFPGK-SVTQAYRQIGNSVPVPVAEAIAKAI  273 (275)
T ss_pred             HHHHHHHcCCCCCcEEcCC-CHHHHHHhhcCCcCHHHHHHHHHHH
Confidence            9999999999999987533 8999999999999998877766443

Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.

>PRK10458 DNA cytosine methylase; Provisional

Probab=98.61  E-value=3e-08  Score=108.88  Aligned_cols=57  Identities=9%  Similarity=0.104  Sum_probs=47.0

Q ss_pred             ccccCCCChhhHHHHhcCC--CCCcccCCCChHHHHHHhhhhhccccchhhhccccccC
Q 008149          384 AYKLGPVDPEHIELILGYP--SNHTQAAGNSLTARLESLRHCFQTDTLGYHLSVLKSMF  440 (576)
Q Consensus       384 ~~~~~ple~~E~E~i~GfP--~~~T~~~~~~~teR~k~Lg~sf~vdtv~~~lsvLK~~f  440 (576)
                      .++++.|||.|+-||+|||  ..++=...+|.++.||.+|||..|+++..++..|+.+.
T Consensus       398 ~~~~RrLTprE~aRLqGF~~pd~~~F~~~vSdtq~Ykq~GNSV~Vpvv~aIa~~L~~~~  456 (467)
T PRK10458        398 QHRPRRLTPRECARLMGFEAPGEAKFRIPVSDTQAYRQFGNSVVVPVFAAVAKLLEPKI  456 (467)
T ss_pred             cCCcccCCHHHHHHhCCCCCCccccccCCCCHHHHHHHhCCcccHHHHHHHHHHHHHHH
Confidence            3578999999999999995  43332247899999999999999999998887777643

>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2

Probab=98.44  E-value=4.7e-08  Score=98.66  Aligned_cols=55  Identities=11%  Similarity=0.201  Sum_probs=42.2

Q ss_pred             eecccccCCCChhhHHHHhcCCCCCcccCCCChHHHHHHhhhhhccccchhhhcccc
Q 008149          381 WVGAYKLGPVDPEHIELILGYPSNHTQAAGNSLTARLESLRHCFQTDTLGYHLSVLK  437 (576)
Q Consensus       381 W~g~~~~~ple~~E~E~i~GfP~~~T~~~~~~~teR~k~Lg~sf~vdtv~~~lsvLK  437 (576)
                      ++.+.+.+.|++.|+.||+|||++|+-  ..+.++++|.+||+..+....++...|+
T Consensus       280 ~~hp~~~R~LT~rE~aRLqgFPd~~~f--~g~~~~~~~qiGNAVpp~v~~~I~~~i~  334 (335)
T PF00145_consen  280 FIHPEQNRRLTPREAARLQGFPDDFKF--PGSKTQQYKQIGNAVPPPVAEAIAKAIK  334 (335)
T ss_dssp             EBTTSSSCB-BHHHHHHHTTSSTTS-S---SSHHHHHHHHHCS--HHHHHHHHHHHH
T ss_pred             ccCCCCCCcCcHHHHHHhCCCCCceEc--cCCHHHHhceECCCcCHHHHHHHHHHhh
Confidence            356789999999999999999999986  5666699999999999888777765543

1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....

>TIGR00675 dcm DNA-methyltransferase (dcm)

Probab=97.99  E-value=1.6e-06  Score=90.45  Aligned_cols=178  Identities=14%  Similarity=0.193  Sum_probs=94.3

Q ss_pred             cCCCCccccccccccch----hhhHhhhhhh----ccCCceeeccccc-CcccccccccccCC---CCCCCCCCCC----
Q 008149          246 VAQPPYFFYGNVVDVSI----DCWVKMSHFL----YSLEPEFVNSQYF-SALSRREGYLHNLP---TTNRFHIPPE----  309 (576)
Q Consensus       246 ~~~ppfF~~eNV~~~~~----~~w~~Is~fL----~~i~Pe~vds~~f-saa~R~R~y~hNLP---~~nR~~~~p~----  309 (576)
                      ..+|.+|++|||..+-.    ..+..|-+-|    |.+...++||..| .||+|+|.|+--.-   ....+. .|.    
T Consensus        98 ~~~P~~~v~ENV~~l~~~~~~~~~~~i~~~l~~~GY~v~~~~l~a~dyGvPQ~R~R~f~ia~r~~~~~~~~~-~p~~~~~  176 (315)
T TIGR00675        98 EKKPKFFLLENVKGLVSHDKGRTFKVIIETLEELGYKVYYKVLNAKDFGVPQNRERIYIVGFRDFDDKLNFE-FPKPIYV  176 (315)
T ss_pred             hcCCCEEEeeccHHHHhcccchHHHHHHHHHHhCCCEEEEEEEcHHHCCCCCCccEEEEEEEeCCCcCcCCC-CCCCccc
Confidence            35799999999987643    3566666555    6677889999999 99999999876322   111111 232    


Q ss_pred             -CCCcccccccCCC----ccCCCcCcCcccceeeccC-------------cchhHHHHHHHHHHhhccCCCchhhhHHHH
Q 008149          310 -PPMTIQDAIPHTK----KWWPSWDTRKHLSCINSGT-------------SGISQLCERFEKLLRDSRGVLSSQQQRDIL  371 (576)
Q Consensus       310 -~p~ti~d~lp~~~----~~wp~wd~r~klnci~t~~-------------~~~~~l~~~i~~~~~~~~~~~~~~~q~~vl  371 (576)
                       ...||.|++....    .|+++-...+.+..+....             ..........+++..+....  ...+..+.
T Consensus       177 ~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~~t~~  254 (315)
T TIGR00675       177 AKKKRIGDLLDLSVDLEEKYYLSEEKKNGLLLLLENMRKKEGTGEQIGSFYNRESKSSIIRTLSARGYTF--VKGGKSVL  254 (315)
T ss_pred             ccccchHHhcccccCcCCcEEeCHHHHHHHHHHhhccccccccccccceeeccCCccceeeeeecccccc--CCCCccee
Confidence             3567888775321    1111100000000000000             00000000000000000000  00000000


Q ss_pred             HhhcccceeeecccccCCCChhhHHHHhcCCCCCcccCCCChHHHHHHhhhhhccccch
Q 008149          372 HRSEKLNLVWVGAYKLGPVDPEHIELILGYPSNHTQAAGNSLTARLESLRHCFQTDTLG  430 (576)
Q Consensus       372 ~~c~k~nlvW~g~~~~~ple~~E~E~i~GfP~~~T~~~~~~~teR~k~Lg~sf~vdtv~  430 (576)
                      ..+. .+.. +-+.+.+.|++.|.-||+|||++|.  |..+.+..+|.+||+.-+....
T Consensus       255 ~~~~-~~~~-~hp~~~R~lT~RE~aRLQ~FPd~f~--f~~s~~~~~~qiGNAVPp~la~  309 (315)
T TIGR00675       255 IVPH-KSTV-VHPGRIRRLTPRECARLQGFPDDFK--FPVSDSQLYKQAGNAVVVPVIE  309 (315)
T ss_pred             eccc-ccee-ccCCceeeCCHHHHHHHcCCCcccE--eCCCHHHHHhhhCCcccHHHHH
Confidence            0010 0111 2356779999999999999999996  4689999999999998765443

All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A

Probab=97.89  E-value=3.1e-05  Score=67.49  Aligned_cols=83  Identities=17%  Similarity=0.184  Sum_probs=59.1

Q ss_pred             CCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCC-CCccccccccccChhhHHHhhhccCCcc
Q 008149          443 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQT-GELVQIEDIQALTTKKFESLIHKLGSID  521 (576)
Q Consensus       443 ~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~-g~l~~~~DI~~lt~~~Ie~l~~~~g~~D  521 (576)
                      |.+|||+|||.|-+.+.+.+.| . ..+.++|+|+.+....+.++...... ...++.+|++++.. .     ...+.+|
T Consensus         1 g~~vlD~~~G~G~~~~~~~~~~-~-~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~-~-----~~~~~~D   72 (117)
T PF13659_consen    1 GDRVLDPGCGSGTFLLAALRRG-A-ARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPE-P-----LPDGKFD   72 (117)
T ss_dssp             TEEEEEETSTTCHHHHHHHHHC-T-CEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHH-T-----CTTT-EE
T ss_pred             CCEEEEcCcchHHHHHHHHHHC-C-CeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchh-h-----ccCceeE
Confidence            4689999999999999999999 2 45889999999999988877654321 22355677765531 1     1236899


Q ss_pred             EEEecCCCCCcc
Q 008149          522 FVICQNSVPQIP  533 (576)
Q Consensus       522 LVIGGpPCQ~FS  533 (576)
                      +|++-||.-+..
T Consensus        73 ~Iv~npP~~~~~   84 (117)
T PF13659_consen   73 LIVTNPPYGPRS   84 (117)
T ss_dssp             EEEE--STTSBT
T ss_pred             EEEECCCCcccc
Confidence            999999986543

...

>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]

Probab=97.62  E-value=2.6e-05  Score=81.85  Aligned_cols=181  Identities=14%  Similarity=0.179  Sum_probs=97.5

Q ss_pred             cCCCCccccccccccchh---hhHhhhhhhcc----CCceeecccc-cCcccccccccc-----cCCCCCCCCCCCC---
Q 008149          246 VAQPPYFFYGNVVDVSID---CWVKMSHFLYS----LEPEFVNSQY-FSALSRREGYLH-----NLPTTNRFHIPPE---  309 (576)
Q Consensus       246 ~~~ppfF~~eNV~~~~~~---~w~~Is~fL~~----i~Pe~vds~~-fsaa~R~R~y~h-----NLP~~nR~~~~p~---  309 (576)
                      ..+|.||++|||..|-..   .|+.|.+-|..    ++..++||+. -.||+|.|-|+.     |+-.+..-. .+.   
T Consensus       106 ~~~P~~fv~ENV~gl~~~~~~~~~~i~~~L~~~GY~~~~~ilna~dyGvPQ~ReRvfiig~~~~~~~~~~~~~-~~~~~~  184 (328)
T COG0270         106 QLRPKFFVLENVKGLLSSKGQTFDEIKKELEELGYGVEFNILNAADYGVPQSRERVFIVGFRRDNIDLDPNVL-PPLPLG  184 (328)
T ss_pred             hhCCCEEEEecCchHHhcCchHHHHHHHHHHHcCCcchHheeeHHhcCCCCCccEEEEEEecCcccccccccc-Cccccc
Confidence            346799999999999886   88888888754    4456677664 578999999999     777764421 111   


Q ss_pred             CCCcccccc-----cCCCccCC-CcCcCcccceeeccCcchhHHHHHHHH--------HHhhccC------CCchhhhHH
Q 008149          310 PPMTIQDAI-----PHTKKWWP-SWDTRKHLSCINSGTSGISQLCERFEK--------LLRDSRG------VLSSQQQRD  369 (576)
Q Consensus       310 ~p~ti~d~l-----p~~~~~wp-~wd~r~klnci~t~~~~~~~l~~~i~~--------~~~~~~~------~~~~~~q~~  369 (576)
                      ...++.+++     +.+..-|. .+...-+.+-+...      ...++..        ......+      ......=..
T Consensus       185 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~rl~~~~~~~t  258 (328)
T COG0270         185 RKKTLKEALKNNDLPETDELYLSRDLRNHEAKSLPKN------KGERLPSLRWGEALTLSRRYKGKGSYIRLHPDKPAPT  258 (328)
T ss_pred             cccchhhhhhhccCcchhhhhccccccccccccCchh------hhccccccccccccccccccCCCceeEeCCCCCCCce
Confidence            122222222     11111000 00000000000000      0000000        0000000      000000000


Q ss_pred             HHHhhcccceeeecccccCCCChhhHHHHhcCCCCCcccCCCChHHHHHHhhhhhccccchhhhccccc
Q 008149          370 ILHRSEKLNLVWVGAYKLGPVDPEHIELILGYPSNHTQAAGNSLTARLESLRHCFQTDTLGYHLSVLKS  438 (576)
Q Consensus       370 vl~~c~k~nlvW~g~~~~~ple~~E~E~i~GfP~~~T~~~~~~~teR~k~Lg~sf~vdtv~~~lsvLK~  438 (576)
                      +.   ...+-.=+-+..-+.|++.|+-+|+|||+.|.-.+  +.+..++.+||+..+....++..-+..
T Consensus       259 ~~---~~~~~~~~h~~~~r~lt~rE~arlq~fPd~~~~~g--s~~~~~~qiGnsVp~~l~~~ia~~i~~  322 (328)
T COG0270         259 VR---GGGNERFIHPLEDRELTVREAARLQGFPDDFVFPG--SKTDQYRQIGNSVPPLLAEAIAKAILK  322 (328)
T ss_pred             ee---cCCCcccCCCCcCCCCCHHHHHHhcCCCCceEEec--cchhhhhhccCcCCHHHHHHHHHHHHH
Confidence            00   11111112355667799999999999999999764  999999999999988877776655443

>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific

Probab=97.45  E-value=0.0001  Score=74.79  Aligned_cols=82  Identities=13%  Similarity=0.154  Sum_probs=57.7

Q ss_pred             CCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCccE
Q 008149          443 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDF  522 (576)
Q Consensus       443 ~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~DL  522 (576)
                      +.+||||+||.|.+.+.+.+..-. ..|+++|+|+.+.+..+.+....+   ..+..+|+.+.-.+.+      .+.||+
T Consensus        87 ~~~vLDlg~GsG~i~l~la~~~~~-~~v~~vDis~~al~~A~~N~~~~~---~~~~~~D~~~~l~~~~------~~~fDl  156 (251)
T TIGR03704        87 TLVVVDLCCGSGAVGAALAAALDG-IELHAADIDPAAVRCARRNLADAG---GTVHEGDLYDALPTAL------RGRVDI  156 (251)
T ss_pred             CCEEEEecCchHHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHHHHcC---CEEEEeechhhcchhc------CCCEeE
Confidence            468999999999999988754211 236899999999998887764332   2245677754321111      257999


Q ss_pred             EEecCCCCCccc
Q 008149          523 VICQNSVPQIPN  534 (576)
Q Consensus       523 VIGGpPCQ~FS~  534 (576)
                      |+.-|||.+.+.
T Consensus       157 Vv~NPPy~~~~~  168 (251)
T TIGR03704       157 LAANAPYVPTDA  168 (251)
T ss_pred             EEECCCCCCchh
Confidence            999999998763

This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.

>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH

Probab=97.44  E-value=0.00018  Score=70.12  Aligned_cols=91  Identities=21%  Similarity=0.253  Sum_probs=52.5

Q ss_pred             hccccccCCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCC-CccccccccccChhhHH
Q 008149          433 LSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFE  511 (576)
Q Consensus       433 lsvLK~~f~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g-~l~~~~DI~~lt~~~Ie  511 (576)
                      |+.|.+.--.+.+|||||||.|.+.+=.-.-|.  +-|+.||.|+.+.++++.|....+... ..++..|...    .+.
T Consensus        33 FniL~~~~~~g~~vLDLFaGSGalGlEALSRGA--~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~----~l~  106 (183)
T PF03602_consen   33 FNILQPRNLEGARVLDLFAGSGALGLEALSRGA--KSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFK----FLL  106 (183)
T ss_dssp             HHHHHCH-HTT-EEEETT-TTSHHHHHHHHTT---SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHH----HHH
T ss_pred             HHHhcccccCCCeEEEcCCccCccHHHHHhcCC--CeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHH----HHH
Confidence            444444312478899999999987664445576  458999999999999999987654222 1123334322    122


Q ss_pred             HhhhccCCccEEEecCCC
Q 008149          512 SLIHKLGSIDFVICQNSV  529 (576)
Q Consensus       512 ~l~~~~g~~DLVIGGpPC  529 (576)
                      .+......||||.--||=
T Consensus       107 ~~~~~~~~fDiIflDPPY  124 (183)
T PF03602_consen  107 KLAKKGEKFDIIFLDPPY  124 (183)
T ss_dssp             HHHHCTS-EEEEEE--ST
T ss_pred             hhcccCCCceEEEECCCc
Confidence            222224689999999983

They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.

>COG2520 Predicted methyltransferase [General function prediction only]

Probab=97.35  E-value=0.00029  Score=75.14  Aligned_cols=95  Identities=21%  Similarity=0.263  Sum_probs=70.8

Q ss_pred             hccccchhhhccccccCCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCC-ccccccc
Q 008149          424 FQTDTLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGE-LVQIEDI  502 (576)
Q Consensus       424 f~vdtv~~~lsvLK~~f~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~-l~~~~DI  502 (576)
                      |+.-...-+..+++..++ |-+|+|+|||+|-+++-....|-. + |+|+||||.|.+-++.+-.-+.-.+. ..+++|.
T Consensus       171 Fsprl~~ER~Rva~~v~~-GE~V~DmFAGVGpfsi~~Ak~g~~-~-V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~  247 (341)
T COG2520         171 FSPRLSTERARVAELVKE-GETVLDMFAGVGPFSIPIAKKGRP-K-VYAIDINPDAVEYLKENIRLNKVEGRVEPILGDA  247 (341)
T ss_pred             ECCCchHHHHHHHhhhcC-CCEEEEccCCcccchhhhhhcCCc-e-EEEEecCHHHHHHHHHHHHhcCccceeeEEeccH
Confidence            555555555666666555 889999999999999999999953 4 99999999999999987643322332 2456787


Q ss_pred             cccChhhHHHhhhccCCccEEEecCCC
Q 008149          503 QALTTKKFESLIHKLGSIDFVICQNSV  529 (576)
Q Consensus       503 ~~lt~~~Ie~l~~~~g~~DLVIGGpPC  529 (576)
                      +++..+        .+.+|=||-|-|=
T Consensus       248 rev~~~--------~~~aDrIim~~p~  266 (341)
T COG2520         248 REVAPE--------LGVADRIIMGLPK  266 (341)
T ss_pred             HHhhhc--------cccCCEEEeCCCC
Confidence            766542        2679999999984

>TIGR00095 RNA methyltransferase, RsmD family

Probab=97.33  E-value=0.00048  Score=67.19  Aligned_cols=83  Identities=17%  Similarity=0.064  Sum_probs=56.8

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCC-CccccccccccChhhHHHhhhccCCc
Q 008149          442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGSI  520 (576)
Q Consensus       442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g-~l~~~~DI~~lt~~~Ie~l~~~~g~~  520 (576)
                      .+-+|||||||.|.+.+.+-..|..  .|++||+++.+.++.+.++...+... ..++.+|+.+.    +..+......+
T Consensus        49 ~g~~vLDLfaGsG~lglea~srga~--~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~----l~~~~~~~~~~  122 (189)
T TIGR00095        49 QGAHLLDVFAGSGLLGEEALSRGAK--VAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRA----LKFLAKKPTFD  122 (189)
T ss_pred             CCCEEEEecCCCcHHHHHHHhCCCC--EEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHH----HHHhhccCCCc
Confidence            3568999999999999999888874  58999999999999998886543221 12345555322    11111111237


Q ss_pred             cEEEecCCCC
Q 008149          521 DFVICQNSVP  530 (576)
Q Consensus       521 DLVIGGpPCQ  530 (576)
                      |+|+--||=.
T Consensus       123 dvv~~DPPy~  132 (189)
T TIGR00095       123 NVIYLDPPFF  132 (189)
T ss_pred             eEEEECcCCC
Confidence            9998888853

This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.

>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family

Probab=97.31  E-value=0.00046  Score=68.49  Aligned_cols=81  Identities=22%  Similarity=0.283  Sum_probs=50.7

Q ss_pred             CCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCc-cccccccccChhhHHHhhhccC
Q 008149          440 FPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGEL-VQIEDIQALTTKKFESLIHKLG  518 (576)
Q Consensus       440 f~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l-~~~~DI~~lt~~~Ie~l~~~~g  518 (576)
                      +..+-+|+|+|||+|.|++-+.+.+ +.+.|+|+|+||.|.+.++.+-..++-.+.+ +..+|.+++..         .+
T Consensus        99 v~~~e~VlD~faGIG~f~l~~ak~~-~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~---------~~  168 (200)
T PF02475_consen   99 VKPGEVVLDMFAGIGPFSLPIAKHG-KAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLP---------EG  168 (200)
T ss_dssp             --TT-EEEETT-TTTTTHHHHHHHT--SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG------------TT
T ss_pred             CCcceEEEEccCCccHHHHHHhhhc-CccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcC---------cc
Confidence            4557889999999999999887733 2356999999999999998876544433332 35677766643         24


Q ss_pred             CccEEEecCCCC
Q 008149          519 SIDFVICQNSVP  530 (576)
Q Consensus       519 ~~DLVIGGpPCQ  530 (576)
                      .+|-|+.|.|=.
T Consensus       169 ~~drvim~lp~~  180 (200)
T PF02475_consen  169 KFDRVIMNLPES  180 (200)
T ss_dssp             -EEEEEE--TSS
T ss_pred             ccCEEEECChHH
Confidence            689999998843

Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.

>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional

Probab=97.21  E-value=0.00052  Score=67.85  Aligned_cols=77  Identities=12%  Similarity=0.085  Sum_probs=52.8

Q ss_pred             CCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCccE
Q 008149          443 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDF  522 (576)
Q Consensus       443 ~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~DL  522 (576)
                      +-+|||||||.|.+.+.+-..|.  .-|.++|+++.+.+..+.+....+.....++.+|+.+.    +.   ...+.+|+
T Consensus        54 ~~~vLDl~~GsG~l~l~~lsr~a--~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~----l~---~~~~~fDl  124 (199)
T PRK10909         54 DARCLDCFAGSGALGLEALSRYA--AGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSF----LA---QPGTPHNV  124 (199)
T ss_pred             CCEEEEcCCCccHHHHHHHHcCC--CEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHH----Hh---hcCCCceE
Confidence            46899999999999985333343  34889999999999999887655322222445565331    11   11246999


Q ss_pred             EEecCC
Q 008149          523 VICQNS  528 (576)
Q Consensus       523 VIGGpP  528 (576)
                      |+--||
T Consensus       125 V~~DPP  130 (199)
T PRK10909        125 VFVDPP  130 (199)
T ss_pred             EEECCC
Confidence            999999

>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional

Probab=97.18  E-value=0.00087  Score=72.70  Aligned_cols=82  Identities=20%  Similarity=0.197  Sum_probs=58.4

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCC--CCccccccccccChhhHHHhhhccCC
Q 008149          442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQT--GELVQIEDIQALTTKKFESLIHKLGS  519 (576)
Q Consensus       442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~--g~l~~~~DI~~lt~~~Ie~l~~~~g~  519 (576)
                      .+-+|||||||+||+++.....|.  .-|++||+++.+....+.++..++..  ...++.+|+.++-    .++....+.
T Consensus       220 ~g~rVLDlfsgtG~~~l~aa~~ga--~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l----~~~~~~~~~  293 (396)
T PRK15128        220 ENKRVLNCFSYTGGFAVSALMGGC--SQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLL----RTYRDRGEK  293 (396)
T ss_pred             CCCeEEEeccCCCHHHHHHHhCCC--CEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHH----HHHHhcCCC
Confidence            467899999999999887666664  35889999999999999888654332  1224567775432    222212347


Q ss_pred             ccEEEecCCC
Q 008149          520 IDFVICQNSV  529 (576)
Q Consensus       520 ~DLVIGGpPC  529 (576)
                      ||+||--||+
T Consensus       294 fDlVilDPP~  303 (396)
T PRK15128        294 FDVIVMDPPK  303 (396)
T ss_pred             CCEEEECCCC
Confidence            9999999997

>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]

Probab=97.02  E-value=0.0008  Score=64.98  Aligned_cols=82  Identities=24%  Similarity=0.243  Sum_probs=49.2

Q ss_pred             cccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCC-CCCccccccccccChhhHHHhhhccCC-ccE
Q 008149          445 TMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQ-TGELVQIEDIQALTTKKFESLIHKLGS-IDF  522 (576)
Q Consensus       445 ~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~-~g~l~~~~DI~~lt~~~Ie~l~~~~g~-~DL  522 (576)
                      +|+|+|||+||=.+.|.+.+   ..|+|||+|+......++|-+-.+. ....++++|..++-..    +  .... +|+
T Consensus         2 ~vlD~fcG~GGNtIqFA~~~---~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~----~--~~~~~~D~   72 (163)
T PF09445_consen    2 TVLDAFCGVGGNTIQFARTF---DRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKR----L--KSNKIFDV   72 (163)
T ss_dssp             EEEETT-TTSHHHHHHHHTT----EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGG----B--------SE
T ss_pred             EEEEeccCcCHHHHHHHHhC---CeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhh----c--cccccccE
Confidence            58999999999999999985   4589999999998888876543211 1112345555543211    0  1122 799


Q ss_pred             EEecCCCCCcccc
Q 008149          523 VICQNSVPQIPNS  535 (576)
Q Consensus       523 VIGGpPCQ~FS~a  535 (576)
                      |...||=-+.+..
T Consensus        73 vFlSPPWGGp~Y~   85 (163)
T PF09445_consen   73 VFLSPPWGGPSYS   85 (163)
T ss_dssp             EEE---BSSGGGG
T ss_pred             EEECCCCCCcccc
Confidence            9999998887754

Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.

>PHA03412 putative methyltransferase; Provisional

Probab=96.95  E-value=0.0012  Score=67.37  Aligned_cols=122  Identities=16%  Similarity=0.171  Sum_probs=81.5

Q ss_pred             CCCChhhHHHHhcCCCCCcccCCCChHHHHHHhhhhhccccchhhhccccccCCCCCcccccCCCCChhHHHHHHcC--C
Q 008149          388 GPVDPEHIELILGYPSNHTQAAGNSLTARLESLRHCFQTDTLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLG--I  465 (576)
Q Consensus       388 ~ple~~E~E~i~GfP~~~T~~~~~~~teR~k~Lg~sf~vdtv~~~lsvLK~~f~~~l~VLsLFSGiGG~slGL~~aG--i  465 (576)
                      ++|+-+|.|.++   .||+..   . .--.+.+|.-|+...+++++... . . .+.+|||+-||.|.+.+.+-+.-  -
T Consensus         5 ~~~~~~~~~f~~---~n~~~~---~-~~~~~~~GqFfTP~~iAr~~~i~-~-~-~~grVLDlG~GSG~Lalala~~~~~~   74 (241)
T PHA03412          5 KALTYEEKLFII---ENFHEG---A-FTNNSELGAFFTPIGLARDFTID-A-C-TSGSVVDLCAGIGGLSFAMVHMMMYA   74 (241)
T ss_pred             ccccHHHHHHHH---hhcccc---c-ccccccCCccCCCHHHHHHHHHh-c-c-CCCEEEEccChHHHHHHHHHHhcccC
Confidence            467778888776   577762   1 12234568888888887776422 1 2 36799999999999998876531  1


Q ss_pred             ceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCccEEEecCCCCCcc
Q 008149          466 KLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDFVICQNSVPQIP  533 (576)
Q Consensus       466 ~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~DLVIGGpPCQ~FS  533 (576)
                      +-..|.+||||+.+.+..+.+.     ....++..|+.....         .+.||+||+=||=-...
T Consensus        75 ~~~~V~aVEID~~Al~~Ar~n~-----~~~~~~~~D~~~~~~---------~~~FDlIIsNPPY~~~~  128 (241)
T PHA03412         75 KPREIVCVELNHTYYKLGKRIV-----PEATWINADALTTEF---------DTLFDMAISNPPFGKIK  128 (241)
T ss_pred             CCcEEEEEECCHHHHHHHHhhc-----cCCEEEEcchhcccc---------cCCccEEEECCCCCCcc
Confidence            1125889999999988876542     223356677764321         14799999999965543

>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A

Probab=96.87  E-value=0.0025  Score=58.83  Aligned_cols=84  Identities=21%  Similarity=0.287  Sum_probs=62.6

Q ss_pred             CCCcccccCCCCChhHHHHH-HcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 008149          442 GGLTMLSVFSGIGGAEVTLH-RLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI  520 (576)
Q Consensus       442 ~~l~VLsLFSGiGG~slGL~-~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~  520 (576)
                      .+.+||||-||.|-+...|. +++-..+ ++++|+++.+.+..+......+.....+..+||.++... ++      +.|
T Consensus         3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~-i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~-~~------~~~   74 (152)
T PF13847_consen    3 SNKKILDLGCGTGRLLIQLAKELNPGAK-IIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQE-LE------EKF   74 (152)
T ss_dssp             TTSEEEEET-TTSHHHHHHHHHSTTTSE-EEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGC-SS------TTE
T ss_pred             CCCEEEEecCcCcHHHHHHHHhcCCCCE-EEEEECcHHHHHHhhcccccccccccceEEeehhccccc-cC------CCe
Confidence            46899999999999999999 5654333 889999999999888876554443334667899887643 32      479


Q ss_pred             cEEEecCCCCCcc
Q 008149          521 DFVICQNSVPQIP  533 (576)
Q Consensus       521 DLVIGGpPCQ~FS  533 (576)
                      |+|+...++..+.
T Consensus        75 D~I~~~~~l~~~~   87 (152)
T PF13847_consen   75 DIIISNGVLHHFP   87 (152)
T ss_dssp             EEEEEESTGGGTS
T ss_pred             eEEEEcCchhhcc
Confidence            9999998885444

...

>smart00165 UBA Ubiquitin associated domain

Probab=96.84  E-value=0.002  Score=46.65  Aligned_cols=35  Identities=31%  Similarity=0.430  Sum_probs=29.7

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHhCCCCChhhhhHhHh
Q 008149           90 EITLQLLEMGFSENQVSLAIEKFGSKTPISELADKIF  126 (576)
Q Consensus        90 ~k~~~L~~MGFseeEas~AI~r~G~da~i~eLvD~I~  126 (576)
                      +++..|+.|||++++|..|+.+||.|  ++.-+++|+
T Consensus         3 ~~v~~L~~mGf~~~~a~~aL~~~~~d--~~~A~~~L~   37 (37)
T smart00165        3 EKIDQLLEMGFSREEALKALRAANGN--VERAAEYLL   37 (37)
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHhCCC--HHHHHHHHC
Confidence            47789999999999999999999987  666666653

Present in Rad23, SNF1-like kinases. The newly-found UBA in p62 is known to bind ubiquitin.

>TIGR01177 conserved hypothetical protein TIGR01177

Probab=96.82  E-value=0.0061  Score=63.96  Aligned_cols=82  Identities=20%  Similarity=0.165  Sum_probs=58.7

Q ss_pred             CCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 008149          441 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI  520 (576)
Q Consensus       441 ~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~  520 (576)
                      +.+.+|||+|||.|++.+.+...|.   .++++|+|+...+..+.+....+.....+..+|+.++...        .+.+
T Consensus       181 ~~g~~vLDp~cGtG~~lieaa~~~~---~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~~--------~~~~  249 (329)
T TIGR01177       181 TEGDRVLDPFCGTGGFLIEAGLMGA---KVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLPLS--------SESV  249 (329)
T ss_pred             CCcCEEEECCCCCCHHHHHHHHhCC---eEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCCcc--------cCCC
Confidence            3467899999999999887777775   3689999998877666665443322223456787766421        2479


Q ss_pred             cEEEecCCCCCcc
Q 008149          521 DFVICQNSVPQIP  533 (576)
Q Consensus       521 DLVIGGpPCQ~FS  533 (576)
                      |+|+.-|||...+
T Consensus       250 D~Iv~dPPyg~~~  262 (329)
T TIGR01177       250 DAIATDPPYGRST  262 (329)
T ss_pred             CEEEECCCCcCcc
Confidence            9999999986544

This family is found exclusively in the Archaea.

>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB

Probab=96.77  E-value=0.002  Score=69.11  Aligned_cols=76  Identities=14%  Similarity=0.170  Sum_probs=54.6

Q ss_pred             CCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCccE
Q 008149          443 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDF  522 (576)
Q Consensus       443 ~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~DL  522 (576)
                      +-+|||||||+|.+++.+...|-   .|++||+++.+.+..+.+....+.....+..+|+.++...       ..+.+|+
T Consensus       234 ~~~vLDL~cG~G~~~l~la~~~~---~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~-------~~~~~D~  303 (374)
T TIGR02085       234 VTQMWDLFCGVGGFGLHCAGPDT---QLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATA-------QMSAPEL  303 (374)
T ss_pred             CCEEEEccCCccHHHHHHhhcCC---eEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHh-------cCCCCCE
Confidence            45799999999999998887763   4889999999999998877544322122445666543211       1146899


Q ss_pred             EEecCC
Q 008149          523 VICQNS  528 (576)
Q Consensus       523 VIGGpP  528 (576)
                      |+-=||
T Consensus       304 vi~DPP  309 (374)
T TIGR02085       304 VLVNPP  309 (374)
T ss_pred             EEECCC
Confidence            999999

This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.

>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed

Probab=96.76  E-value=0.0029  Score=66.08  Aligned_cols=81  Identities=22%  Similarity=0.214  Sum_probs=58.0

Q ss_pred             CCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCccE
Q 008149          443 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDF  522 (576)
Q Consensus       443 ~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~DL  522 (576)
                      +-+|||||||.|.+++.+.+.|-   -|+++|+++.+.+..+.+....+.....++.+|+.++...       ..+.+|+
T Consensus       174 ~~~VLDl~cG~G~~sl~la~~~~---~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~-------~~~~~D~  243 (315)
T PRK03522        174 PRSMWDLFCGVGGFGLHCATPGM---QLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATA-------QGEVPDL  243 (315)
T ss_pred             CCEEEEccCCCCHHHHHHHhcCC---EEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHh-------cCCCCeE
Confidence            46899999999999999998774   4789999999998888766443321122455666543210       1246899


Q ss_pred             EEecCCCCCcc
Q 008149          523 VICQNSVPQIP  533 (576)
Q Consensus       523 VIGGpPCQ~FS  533 (576)
                      |+--||+.+..
T Consensus       244 Vv~dPPr~G~~  254 (315)
T PRK03522        244 VLVNPPRRGIG  254 (315)
T ss_pred             EEECCCCCCcc
Confidence            99999987653

>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases

Probab=96.71  E-value=0.0048  Score=58.64  Aligned_cols=77  Identities=21%  Similarity=0.250  Sum_probs=55.0

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 008149          442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  521 (576)
Q Consensus       442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~D  521 (576)
                      ..-++|||-||+|-+++.+.+.+-..+ |.++|+++.+....+.++..++-....+...|+.+--         ..+.||
T Consensus        31 ~~~~vLDlG~G~G~i~~~la~~~~~~~-v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~~---------~~~~fD  100 (170)
T PF05175_consen   31 KGGRVLDLGCGSGVISLALAKRGPDAK-VTAVDINPDALELAKRNAERNGLENVEVVQSDLFEAL---------PDGKFD  100 (170)
T ss_dssp             TTCEEEEETSTTSHHHHHHHHTSTCEE-EEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTTC---------CTTCEE
T ss_pred             cCCeEEEecCChHHHHHHHHHhCCCCE-EEEEcCCHHHHHHHHHHHHhcCccccccccccccccc---------ccccee
Confidence            457899999999999999999887644 8999999999999998887553222223445553211         125899


Q ss_pred             EEEecCC
Q 008149          522 FVICQNS  528 (576)
Q Consensus       522 LVIGGpP  528 (576)
                      +|+..||
T Consensus       101 ~Iv~NPP  107 (170)
T PF05175_consen  101 LIVSNPP  107 (170)
T ss_dssp             EEEE---
T ss_pred             EEEEccc
Confidence            9999999

; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....

>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase

Probab=96.68  E-value=0.0039  Score=63.63  Aligned_cols=85  Identities=13%  Similarity=0.099  Sum_probs=57.4

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 008149          442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  521 (576)
Q Consensus       442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~D  521 (576)
                      .+-+|||++||.||.++.+..+--+--.|+++|+++...+.++.+....+.....+...|.+.+..        ..+.||
T Consensus        71 ~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~--------~~~~fD  142 (264)
T TIGR00446        71 PPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGA--------AVPKFD  142 (264)
T ss_pred             CcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhh--------hccCCC
Confidence            457899999999999988765311111489999999999888877654432222234455543321        124699


Q ss_pred             EEEecCCCCCccc
Q 008149          522 FVICQNSVPQIPN  534 (576)
Q Consensus       522 LVIGGpPCQ~FS~  534 (576)
                      .|+--+||.+...
T Consensus       143 ~Vl~D~Pcsg~G~  155 (264)
T TIGR00446       143 AILLDAPCSGEGV  155 (264)
T ss_pred             EEEEcCCCCCCcc
Confidence            9999999986543

>PF00627 UBA: UBA/TS-N domain; InterPro: IPR000449 UBA domains are a commonly occurring sequence motif of approximately 45 amino acid residues that are found in diverse proteins involved in the ubiquitin/proteasome pathway, DNA excision-repair, and cell signalling via protein kinases []

Probab=96.58  E-value=0.0039  Score=45.64  Aligned_cols=35  Identities=31%  Similarity=0.428  Sum_probs=28.0

Q ss_pred             hHHHHHHHhcCCCHHHHHHHHHHhCCCCChhhhhHhH
Q 008149           89 MEITLQLLEMGFSENQVSLAIEKFGSKTPISELADKI  125 (576)
Q Consensus        89 ~~k~~~L~~MGFseeEas~AI~r~G~da~i~eLvD~I  125 (576)
                      .+++..|+.|||+++++..|+.+||.+  ++.-++++
T Consensus         3 ~~~v~~L~~mGf~~~~~~~AL~~~~~n--ve~A~~~L   37 (37)
T PF00627_consen    3 EEKVQQLMEMGFSREQAREALRACNGN--VERAVDWL   37 (37)
T ss_dssp             HHHHHHHHHHTS-HHHHHHHHHHTTTS--HHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHcCCC--HHHHHHhC
Confidence            457789999999999999999999984  66655543

The human homologue of yeast Rad23A is one example of a nucleotide excision-repair protein that contains both an internal and a C-terminal UBA domain. The solution structure of human Rad23A UBA(2) showed that the domain forms a compact three-helix bundle []. Comparison of the structures of UBA(1) and UBA(2) reveals that both form very similar folds and have a conserved large hydrophobic surface patch which may be a common protein-interacting surface present in diverse UBA domains. Evidence that ubiquitin binds to UBA domains leads to the prediction that the hydrophobic surface patch of UBA domains interacts with the hydrophobic surface on the five-stranded beta-sheet of ubiquitin []. This domain is similar in sequence to the N-terminal domain of translation elongation factor EF1B (or EF-Ts) from bacteria, mitochondria and chloroplasts. More information about EF1B (EF-Ts) proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005515 protein binding; PDB: 2DAI_A 2OO9_C 2JUJ_A 1WHC_A 1YLA_A 2O25_B 3K9O_A 3K9P_A 3F92_A 3E46_A ....

>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=96.52  E-value=0.0084  Score=60.22  Aligned_cols=82  Identities=13%  Similarity=0.085  Sum_probs=56.9

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 008149          442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  521 (576)
Q Consensus       442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~D  521 (576)
                      .+.+|||+.||.|.+.+.+....-. ..++++|+++.+.+..+.+..........+...|+.+-.         ..+.||
T Consensus       108 ~~~~vLDiG~GsG~~~~~la~~~~~-~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~~---------~~~~fD  177 (275)
T PRK09328        108 EPLRVLDLGTGSGAIALALAKERPD-AEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEPL---------PGGRFD  177 (275)
T ss_pred             CCCEEEEEcCcHHHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCcC---------CCCcee
Confidence            4578999999999999988876522 347899999999888887654111112223445553211         025799


Q ss_pred             EEEecCCCCCcc
Q 008149          522 FVICQNSVPQIP  533 (576)
Q Consensus       522 LVIGGpPCQ~FS  533 (576)
                      +|+.-||+-+.+
T Consensus       178 ~Iv~npPy~~~~  189 (275)
T PRK09328        178 LIVSNPPYIPEA  189 (275)
T ss_pred             EEEECCCcCCcc
Confidence            999999997755

>PHA03411 putative methyltransferase; Provisional

Probab=96.39  E-value=0.0059  Score=63.68  Aligned_cols=96  Identities=17%  Similarity=0.221  Sum_probs=65.5

Q ss_pred             hhhhccccchhhhccccccCCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccc
Q 008149          421 RHCFQTDTLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIE  500 (576)
Q Consensus       421 g~sf~vdtv~~~lsvLK~~f~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~  500 (576)
                      |--|+.+.+.++| ++...  .+-+|||++||+|.+.+.+....-. ..|+++|+++.+.+..+..+     +...++.+
T Consensus        46 G~FfTP~~i~~~f-~~~~~--~~grVLDLGcGsGilsl~la~r~~~-~~V~gVDisp~al~~Ar~n~-----~~v~~v~~  116 (279)
T PHA03411         46 GAFFTPEGLAWDF-TIDAH--CTGKVLDLCAGIGRLSFCMLHRCKP-EKIVCVELNPEFARIGKRLL-----PEAEWITS  116 (279)
T ss_pred             eeEcCCHHHHHHH-Hhccc--cCCeEEEcCCCCCHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHhC-----cCCEEEEC
Confidence            6667778888887 34332  2358999999999998777443111 24789999999988776532     22335567


Q ss_pred             cccccChhhHHHhhhccCCccEEEecCCCCCccc
Q 008149          501 DIQALTTKKFESLIHKLGSIDFVICQNSVPQIPN  534 (576)
Q Consensus       501 DI~~lt~~~Ie~l~~~~g~~DLVIGGpPCQ~FS~  534 (576)
                      |+.++..         .+.||+|++-||-.....
T Consensus       117 D~~e~~~---------~~kFDlIIsNPPF~~l~~  141 (279)
T PHA03411        117 DVFEFES---------NEKFDVVISNPPFGKINT  141 (279)
T ss_pred             chhhhcc---------cCCCcEEEEcCCccccCc
Confidence            7765431         146999999999877553

>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated

Probab=96.38  E-value=0.0051  Score=65.75  Aligned_cols=82  Identities=13%  Similarity=0.140  Sum_probs=54.2

Q ss_pred             CcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhh----c---
Q 008149          444 LTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIH----K---  516 (576)
Q Consensus       444 l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~----~---  516 (576)
                      -+|||||||.|++++++.+..   +-|++||+++.+.+..+.+-..++.....++.+|+.++-.+ +.....    .   
T Consensus       208 ~~vLDl~~G~G~~sl~la~~~---~~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~~l~~-~~~~~~~~~~~~~~  283 (362)
T PRK05031        208 GDLLELYCGNGNFTLALARNF---RRVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEEFTQA-MNGVREFNRLKGID  283 (362)
T ss_pred             CeEEEEeccccHHHHHHHhhC---CEEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHH-Hhhccccccccccc
Confidence            469999999999999988764   35899999999999888765433222222456777554211 110000    0   


Q ss_pred             --cCCccEEEecCCC
Q 008149          517 --LGSIDFVICQNSV  529 (576)
Q Consensus       517 --~g~~DLVIGGpPC  529 (576)
                        ...+|+|+--||=
T Consensus       284 ~~~~~~D~v~lDPPR  298 (362)
T PRK05031        284 LKSYNFSTIFVDPPR  298 (362)
T ss_pred             ccCCCCCEEEECCCC
Confidence              1148999999993

>cd00194 UBA Ubiquitin Associated domain

Probab=96.35  E-value=0.0073  Score=43.90  Aligned_cols=35  Identities=29%  Similarity=0.423  Sum_probs=30.2

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHhCCCCChhhhhHhHh
Q 008149           90 EITLQLLEMGFSENQVSLAIEKFGSKTPISELADKIF  126 (576)
Q Consensus        90 ~k~~~L~~MGFseeEas~AI~r~G~da~i~eLvD~I~  126 (576)
                      +++..|+.|||+++++..|+.+|+.|  ++.-+++|+
T Consensus         3 ~~v~~L~~mGf~~~~~~~AL~~~~~d--~~~A~~~L~   37 (38)
T cd00194           3 EKLEQLLEMGFSREEARKALRATNNN--VERAVEWLL   37 (38)
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHhCCC--HHHHHHHHh
Confidence            47789999999999999999999985  776677765

The UBA domain is a commonly occurring sequence motif in some members of the ubiquitination pathway, UV excision repair proteins, and certain protein kinases. Although its specific role is so far unknown, it has been suggested that UBA domains are involved in conferring protein target specificity. The domain, a compact three helix bundle, has a conserved GFP-loop and the proline is thought to be critical for binding. The UBA domain is distinct from the conserved three helical domain seen in the N-terminus of EF-TS and eukaryotic NAC proteins.

>TIGR00537 hemK_rel_arch HemK-related putative methylase

Probab=96.33  E-value=0.013  Score=55.74  Aligned_cols=77  Identities=14%  Similarity=0.167  Sum_probs=56.7

Q ss_pred             CCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCccE
Q 008149          443 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDF  522 (576)
Q Consensus       443 ~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~DL  522 (576)
                      +-+||||.||.|.++..+...|.   .|+++|+++...+..+.+....+ ....+..+|+.+..          .+.+|+
T Consensus        20 ~~~vLdlG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~-~~~~~~~~d~~~~~----------~~~fD~   85 (179)
T TIGR00537        20 PDDVLEIGAGTGLVAIRLKGKGK---CILTTDINPFAVKELRENAKLNN-VGLDVVMTDLFKGV----------RGKFDV   85 (179)
T ss_pred             CCeEEEeCCChhHHHHHHHhcCC---EEEEEECCHHHHHHHHHHHHHcC-CceEEEEccccccc----------CCcccE
Confidence            35799999999999999999885   47899999999888777654332 11223445654321          247999


Q ss_pred             EEecCCCCCcc
Q 008149          523 VICQNSVPQIP  533 (576)
Q Consensus       523 VIGGpPCQ~FS  533 (576)
                      |+..+|+...+
T Consensus        86 Vi~n~p~~~~~   96 (179)
T TIGR00537        86 ILFNPPYLPLE   96 (179)
T ss_pred             EEECCCCCCCc
Confidence            99999997665

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=96.28  E-value=0.011  Score=68.65  Aligned_cols=83  Identities=18%  Similarity=0.195  Sum_probs=60.1

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCC--CCccccccccccChhhHHHhhhccCC
Q 008149          442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQT--GELVQIEDIQALTTKKFESLIHKLGS  519 (576)
Q Consensus       442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~--g~l~~~~DI~~lt~~~Ie~l~~~~g~  519 (576)
                      .+-+|||||||.||+++.+...|..  .|++||+++.+.+..+.+...++..  ...++.+|+.+.    ++.   ..+.
T Consensus       538 ~g~rVLDlf~gtG~~sl~aa~~Ga~--~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~----l~~---~~~~  608 (702)
T PRK11783        538 KGKDFLNLFAYTGTASVHAALGGAK--STTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAW----LKE---AREQ  608 (702)
T ss_pred             CCCeEEEcCCCCCHHHHHHHHCCCC--EEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHH----HHH---cCCC
Confidence            3568999999999999999998873  4899999999999999887644322  122345665432    111   1257


Q ss_pred             ccEEEecCCCCCcc
Q 008149          520 IDFVICQNSVPQIP  533 (576)
Q Consensus       520 ~DLVIGGpPCQ~FS  533 (576)
                      ||+||-=||+-.-+
T Consensus       609 fDlIilDPP~f~~~  622 (702)
T PRK11783        609 FDLIFIDPPTFSNS  622 (702)
T ss_pred             cCEEEECCCCCCCC
Confidence            99999999975543

>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA

Probab=96.28  E-value=0.012  Score=63.92  Aligned_cols=83  Identities=12%  Similarity=0.116  Sum_probs=57.9

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 008149          442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  521 (576)
Q Consensus       442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~D  521 (576)
                      .+-+|||||||+|.+++.|.+.+-   .|+++|+++.+.+..+.+....+.....++.+|+.++-    ..+....+.+|
T Consensus       292 ~~~~vLDl~cG~G~~sl~la~~~~---~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l----~~~~~~~~~~D  364 (431)
T TIGR00479       292 GEELVVDAYCGVGTFTLPLAKQAK---SVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVL----PKQPWAGQIPD  364 (431)
T ss_pred             CCCEEEEcCCCcCHHHHHHHHhCC---EEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHH----HHHHhcCCCCC
Confidence            346899999999999999988763   47999999999988887765433222234556665421    11111124589


Q ss_pred             EEEecCCCCC
Q 008149          522 FVICQNSVPQ  531 (576)
Q Consensus       522 LVIGGpPCQ~  531 (576)
                      +|+--||.-+
T Consensus       365 ~vi~dPPr~G  374 (431)
T TIGR00479       365 VLLLDPPRKG  374 (431)
T ss_pred             EEEECcCCCC
Confidence            9999999765

This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.

>PRK14904 16S rRNA methyltransferase B; Provisional

Probab=96.28  E-value=0.0089  Score=65.45  Aligned_cols=84  Identities=12%  Similarity=0.104  Sum_probs=58.7

Q ss_pred             CCCcccccCCCCChhHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 008149          442 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI  520 (576)
Q Consensus       442 ~~l~VLsLFSGiGG~slGL~~a-Gi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~  520 (576)
                      .+-+|||++||.||.+..+..+ +-. ..|+++|+++...+..+.+....+.....+..+|..++..         .+.|
T Consensus       250 ~g~~VLDlgaG~G~kt~~la~~~~~~-~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~~---------~~~f  319 (445)
T PRK14904        250 PGSTVLDLCAAPGGKSTFMAELMQNR-GQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFSP---------EEQP  319 (445)
T ss_pred             CCCEEEEECCCCCHHHHHHHHHhCCC-cEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCccccccc---------CCCC
Confidence            3578999999999988766542 211 2489999999998888877654432222244566665431         1469


Q ss_pred             cEEEecCCCCCcccc
Q 008149          521 DFVICQNSVPQIPNS  535 (576)
Q Consensus       521 DLVIGGpPCQ~FS~a  535 (576)
                      |+|+-.+||.+....
T Consensus       320 D~Vl~D~Pcsg~g~~  334 (445)
T PRK14904        320 DAILLDAPCTGTGVL  334 (445)
T ss_pred             CEEEEcCCCCCcchh
Confidence            999999999887754

>smart00650 rADc Ribosomal RNA adenine dimethylases

Probab=96.25  E-value=0.01  Score=56.04  Aligned_cols=76  Identities=18%  Similarity=0.072  Sum_probs=55.9

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 008149          442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  521 (576)
Q Consensus       442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~D  521 (576)
                      .+-++||++||.|.+...+.+.+-   .+.++|+|+......+.++...  ....++.+|+.++....        ..+|
T Consensus        13 ~~~~vLEiG~G~G~lt~~l~~~~~---~v~~vE~~~~~~~~~~~~~~~~--~~v~ii~~D~~~~~~~~--------~~~d   79 (169)
T smart00650       13 PGDTVLEIGPGKGALTEELLERAA---RVTAIEIDPRLAPRLREKFAAA--DNLTVIHGDALKFDLPK--------LQPY   79 (169)
T ss_pred             CcCEEEEECCCccHHHHHHHhcCC---eEEEEECCHHHHHHHHHHhccC--CCEEEEECchhcCCccc--------cCCC
Confidence            346899999999999998888753   4789999999999888766431  12235567777664211        2589


Q ss_pred             EEEecCCCC
Q 008149          522 FVICQNSVP  530 (576)
Q Consensus       522 LVIGGpPCQ  530 (576)
                      +|+|.+|=+
T Consensus        80 ~vi~n~Py~   88 (169)
T smart00650       80 KVVGNLPYN   88 (169)
T ss_pred             EEEECCCcc
Confidence            999998855

>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]

Probab=96.17  E-value=0.018  Score=57.04  Aligned_cols=92  Identities=21%  Similarity=0.289  Sum_probs=57.8

Q ss_pred             hhccccccCCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCC-ccccccccccChhhH
Q 008149          432 HLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGE-LVQIEDIQALTTKKF  510 (576)
Q Consensus       432 ~lsvLK~~f~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~-l~~~~DI~~lt~~~I  510 (576)
                      +|..|-+.+-.+-++||||||.|++.+=.-.=|.  .-++.||.|..+..+++.|-...+..+. .+...|..    .-+
T Consensus        33 lFNil~~~~i~g~~~LDlFAGSGaLGlEAlSRGA--~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~----~~L  106 (187)
T COG0742          33 LFNILAPDEIEGARVLDLFAGSGALGLEALSRGA--ARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDAL----RAL  106 (187)
T ss_pred             HHHhccccccCCCEEEEecCCccHhHHHHHhCCC--ceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHH----HHH
Confidence            3455555223578899999999987543334455  4588999999999999988655432222 12233333    111


Q ss_pred             HHhhhccCCccEEEecCCCC
Q 008149          511 ESLIHKLGSIDFVICQNSVP  530 (576)
Q Consensus       511 e~l~~~~g~~DLVIGGpPCQ  530 (576)
                      .. ....+.||+|.-=||=.
T Consensus       107 ~~-~~~~~~FDlVflDPPy~  125 (187)
T COG0742         107 KQ-LGTREPFDLVFLDPPYA  125 (187)
T ss_pred             Hh-cCCCCcccEEEeCCCCc
Confidence            11 12223599999999977

>KOG0944 consensus Ubiquitin-specific protease UBP14 [Posttranslational modification, protein turnover, chaperones]

Probab=96.17  E-value=0.019  Score=65.51  Aligned_cols=97  Identities=23%  Similarity=0.270  Sum_probs=65.9

Q ss_pred             hhhHHHhcCCCChHHHHHHHHHhCCCCcHHHHHHHHHHhhhcccccccCCCCCCCCC----CCCCCCchhhhhhhh-HHH
Q 008149           18 EKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQISENFEKETDDAPHDND----GTNEDKSDETLYGTM-EIT   92 (576)
Q Consensus        18 ~~r~~li~MGFs~e~V~kAIqe~Ge~~~~~~Ile~Ll~~q~l~~~~~e~~ds~~~~~----~~ne~~~~e~~~~~~-~k~   92 (576)
                      -+.++|+.||||++--.||+=-.|..+ ++.-...|..+          .|+.|-++    .++-- .+.. .+.+ +-.
T Consensus       573 s~i~qL~~MGFp~eac~rAly~tgN~~-aEaA~NWl~~H----------MdDpd~~~p~vvp~~~~-~a~~-~~~~e~~v  639 (763)
T KOG0944|consen  573 SVISQLVEMGFPEEACRRALYYTGNSG-AEAASNWLMEH----------MDDPDIDDPFVVPGNSP-KADA-REVDEESV  639 (763)
T ss_pred             HHHHHHHHcCCCHHHHHHHHhhhcCcc-HHHHHHHHHHh----------ccCcccCCceecCCCCC-cccc-CCCChhHh
Confidence            367899999999999999999999988 77766666632          11111111    00000 0000 0122 234


Q ss_pred             HHHHhcCCCHHHHHHHHHHhCCCCChhhhhHhHhhcc
Q 008149           93 LQLLEMGFSENQVSLAIEKFGSKTPISELADKIFSGQ  129 (576)
Q Consensus        93 ~~L~~MGFseeEas~AI~r~G~da~i~eLvD~I~Aaq  129 (576)
                      -+++.|||+..+|..|+.....  +|+..||-||+--
T Consensus       640 ~si~smGf~~~qa~~aL~~~n~--nveravDWif~h~  674 (763)
T KOG0944|consen  640 ASIVSMGFSRNQAIKALKATNN--NVERAVDWIFSHM  674 (763)
T ss_pred             eeeeeecCcHHHHHHHHHhcCc--cHHHHHHHHHhcc
Confidence            5899999999999999987654  5999999999754

>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=96.15  E-value=0.014  Score=57.98  Aligned_cols=72  Identities=22%  Similarity=0.291  Sum_probs=57.7

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCC-CccccccccccChhhHHHhhhccCCc
Q 008149          442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGSI  520 (576)
Q Consensus       442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g-~l~~~~DI~~lt~~~Ie~l~~~~g~~  520 (576)
                      .+-+|+||=||+|=+.+|...+|-  ..|++||+|+.+..+.+.+-..  .-+ ..+...||+++.           +.+
T Consensus        45 ~g~~V~DlG~GTG~La~ga~~lGa--~~V~~vdiD~~a~ei~r~N~~~--l~g~v~f~~~dv~~~~-----------~~~  109 (198)
T COG2263          45 EGKTVLDLGAGTGILAIGAALLGA--SRVLAVDIDPEALEIARANAEE--LLGDVEFVVADVSDFR-----------GKF  109 (198)
T ss_pred             CCCEEEEcCCCcCHHHHHHHhcCC--cEEEEEecCHHHHHHHHHHHHh--hCCceEEEEcchhhcC-----------Ccc
Confidence            456799999999999999999997  4699999999999999987543  122 234567777665           578


Q ss_pred             cEEEecCC
Q 008149          521 DFVICQNS  528 (576)
Q Consensus       521 DLVIGGpP  528 (576)
                      |.+|--||
T Consensus       110 dtvimNPP  117 (198)
T COG2263         110 DTVIMNPP  117 (198)
T ss_pred             ceEEECCC
Confidence            99999887

>PRK10901 16S rRNA methyltransferase B; Provisional

Probab=96.14  E-value=0.015  Score=63.45  Aligned_cols=84  Identities=12%  Similarity=0.173  Sum_probs=60.8

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 008149          442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  521 (576)
Q Consensus       442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~D  521 (576)
                      .+-+|||++||.||.+..+.+.+-. ..|+++|+++......+.+....+.. ..+..+|+.++..     +. ..+.||
T Consensus       244 ~g~~VLDlgaG~G~~t~~la~~~~~-~~v~a~D~s~~~l~~~~~n~~~~g~~-~~~~~~D~~~~~~-----~~-~~~~fD  315 (427)
T PRK10901        244 NGERVLDACAAPGGKTAHILELAPQ-AQVVALDIDAQRLERVRENLQRLGLK-ATVIVGDARDPAQ-----WW-DGQPFD  315 (427)
T ss_pred             CCCEEEEeCCCCChHHHHHHHHcCC-CEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEcCcccchh-----hc-ccCCCC
Confidence            3678999999999999888776532 35899999999999988877654322 2345677765431     00 124699


Q ss_pred             EEEecCCCCCcc
Q 008149          522 FVICQNSVPQIP  533 (576)
Q Consensus       522 LVIGGpPCQ~FS  533 (576)
                      +|+-.+||.+..
T Consensus       316 ~Vl~D~Pcs~~G  327 (427)
T PRK10901        316 RILLDAPCSATG  327 (427)
T ss_pred             EEEECCCCCccc
Confidence            999999998754

>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed

Probab=96.13  E-value=0.012  Score=64.28  Aligned_cols=85  Identities=19%  Similarity=0.214  Sum_probs=59.2

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 008149          442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  521 (576)
Q Consensus       442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~D  521 (576)
                      .+.+|||||||.|.+++.|.+.+.   .|+++|+++.+.+..+.+-...+.....++.+|+.+...    .+....+.||
T Consensus       297 ~~~~VLDlgcGtG~~sl~la~~~~---~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~----~~~~~~~~fD  369 (443)
T PRK13168        297 PGDRVLDLFCGLGNFTLPLARQAA---EVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFT----DQPWALGGFD  369 (443)
T ss_pred             CCCEEEEEeccCCHHHHHHHHhCC---EEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhh----hhhhhcCCCC
Confidence            357899999999999999988763   478999999999888876543322223355677754321    1000114699


Q ss_pred             EEEecCCCCCcc
Q 008149          522 FVICQNSVPQIP  533 (576)
Q Consensus       522 LVIGGpPCQ~FS  533 (576)
                      +|+--||+.+..
T Consensus       370 ~Vi~dPPr~g~~  381 (443)
T PRK13168        370 KVLLDPPRAGAA  381 (443)
T ss_pred             EEEECcCCcChH
Confidence            999999988754

>PRK14902 16S rRNA methyltransferase B; Provisional

Probab=96.07  E-value=0.014  Score=63.70  Aligned_cols=85  Identities=18%  Similarity=0.266  Sum_probs=59.7

Q ss_pred             CCCcccccCCCCChhHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 008149          442 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI  520 (576)
Q Consensus       442 ~~l~VLsLFSGiGG~slGL~~a-Gi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~  520 (576)
                      .+-+|||++||.||.++.+.+. |-. ..|+++|+++...+..+.+....+.....+..+|+.++.. .+      .+.|
T Consensus       250 ~g~~VLDlgaG~G~~t~~la~~~~~~-~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~-~~------~~~f  321 (444)
T PRK14902        250 GGDTVLDACAAPGGKTTHIAELLKNT-GKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHE-KF------AEKF  321 (444)
T ss_pred             CCCEEEEeCCCCCHHHHHHHHHhCCC-CEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccc-hh------cccC
Confidence            3568999999999999887654 211 2488999999998888877655432222345677766431 11      1479


Q ss_pred             cEEEecCCCCCccc
Q 008149          521 DFVICQNSVPQIPN  534 (576)
Q Consensus       521 DLVIGGpPCQ~FS~  534 (576)
                      |+|+-.+||.++..
T Consensus       322 D~Vl~D~Pcsg~G~  335 (444)
T PRK14902        322 DKILVDAPCSGLGV  335 (444)
T ss_pred             CEEEEcCCCCCCee
Confidence            99999999987654

>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific

Probab=96.02  E-value=0.026  Score=58.38  Aligned_cols=81  Identities=12%  Similarity=0.071  Sum_probs=56.6

Q ss_pred             CCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCC-CccccccccccChhhHHHhhhccCCcc
Q 008149          443 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGSID  521 (576)
Q Consensus       443 ~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g-~l~~~~DI~~lt~~~Ie~l~~~~g~~D  521 (576)
                      +.+|||++||.|.+.+.+.+..-.. .|+++|+++.+.+..+.+....+... ..+..+|+.+.    +     ..+.||
T Consensus       122 ~~~vLDlG~GsG~i~~~la~~~~~~-~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~----~-----~~~~fD  191 (284)
T TIGR03533       122 VKRILDLCTGSGCIAIACAYAFPEA-EVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAA----L-----PGRKYD  191 (284)
T ss_pred             CCEEEEEeCchhHHHHHHHHHCCCC-EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhc----c-----CCCCcc
Confidence            4689999999999999998764222 47899999999988887765432211 12345665321    1     113699


Q ss_pred             EEEecCCCCCcc
Q 008149          522 FVICQNSVPQIP  533 (576)
Q Consensus       522 LVIGGpPCQ~FS  533 (576)
                      +|+.-||+-+.+
T Consensus       192 ~Iv~NPPy~~~~  203 (284)
T TIGR03533       192 LIVSNPPYVDAE  203 (284)
T ss_pred             EEEECCCCCCcc
Confidence            999999997654

Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.

>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=95.89  E-value=0.023  Score=59.68  Aligned_cols=80  Identities=13%  Similarity=0.085  Sum_probs=55.7

Q ss_pred             CcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCC-CccccccccccChhhHHHhhhccCCccE
Q 008149          444 LTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGSIDF  522 (576)
Q Consensus       444 l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g-~l~~~~DI~~lt~~~Ie~l~~~~g~~DL  522 (576)
                      .+|||+.||.|.+.+.+....-. ..|+++|+++.+.+..+.+....+... ..+..+|+.+.    +     ..+.||+
T Consensus       135 ~~VLDlG~GsG~iai~la~~~p~-~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~----l-----~~~~fDl  204 (307)
T PRK11805        135 TRILDLCTGSGCIAIACAYAFPD-AEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAA----L-----PGRRYDL  204 (307)
T ss_pred             CEEEEEechhhHHHHHHHHHCCC-CEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhh----C-----CCCCccE
Confidence            58999999999999998776422 347899999999998888765432211 22345565321    1     0136999


Q ss_pred             EEecCCCCCcc
Q 008149          523 VICQNSVPQIP  533 (576)
Q Consensus       523 VIGGpPCQ~FS  533 (576)
                      |+.-||+-+..
T Consensus       205 IvsNPPyi~~~  215 (307)
T PRK11805        205 IVSNPPYVDAE  215 (307)
T ss_pred             EEECCCCCCcc
Confidence            99999987653

>PRK14967 putative methyltransferase; Provisional

Probab=95.88  E-value=0.016  Score=57.18  Aligned_cols=78  Identities=18%  Similarity=0.180  Sum_probs=53.9

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 008149          442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  521 (576)
Q Consensus       442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~D  521 (576)
                      .+-+|||++||.|.+.+.+.+.|.  ..++++|+++.+.+..+.+....+. ...++.+|+.+.    +     ..+.||
T Consensus        36 ~~~~vLDlGcG~G~~~~~la~~~~--~~v~~vD~s~~~l~~a~~n~~~~~~-~~~~~~~d~~~~----~-----~~~~fD  103 (223)
T PRK14967         36 PGRRVLDLCTGSGALAVAAAAAGA--GSVTAVDISRRAVRSARLNALLAGV-DVDVRRGDWARA----V-----EFRPFD  103 (223)
T ss_pred             CCCeEEEecCCHHHHHHHHHHcCC--CeEEEEECCHHHHHHHHHHHHHhCC-eeEEEECchhhh----c-----cCCCee
Confidence            356899999999999998888875  3578999999988777766543321 122344555432    1     125799


Q ss_pred             EEEecCCCCC
Q 008149          522 FVICQNSVPQ  531 (576)
Q Consensus       522 LVIGGpPCQ~  531 (576)
                      +|+..+|-..
T Consensus       104 ~Vi~npPy~~  113 (223)
T PRK14967        104 VVVSNPPYVP  113 (223)
T ss_pred             EEEECCCCCC
Confidence            9999987443

>PRK14901 16S rRNA methyltransferase B; Provisional

Probab=95.79  E-value=0.022  Score=62.18  Aligned_cols=89  Identities=15%  Similarity=0.150  Sum_probs=59.6

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 008149          442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  521 (576)
Q Consensus       442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~D  521 (576)
                      .+-+|||++||.||.+..+..+.-.-..|+++|+++...+.++.+....+.....+..+|.+++....    ....+.||
T Consensus       252 ~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~----~~~~~~fD  327 (434)
T PRK14901        252 PGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELK----PQWRGYFD  327 (434)
T ss_pred             CcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhccccc----ccccccCC
Confidence            36789999999999998877652111248899999998888887765443322234456766553110    00124799


Q ss_pred             EEEecCCCCCccc
Q 008149          522 FVICQNSVPQIPN  534 (576)
Q Consensus       522 LVIGGpPCQ~FS~  534 (576)
                      .|+-.+||.+...
T Consensus       328 ~Vl~DaPCSg~G~  340 (434)
T PRK14901        328 RILLDAPCSGLGT  340 (434)
T ss_pred             EEEEeCCCCcccc
Confidence            9999999988543

>PF00627 UBA: UBA/TS-N domain; InterPro: IPR000449 UBA domains are a commonly occurring sequence motif of approximately 45 amino acid residues that are found in diverse proteins involved in the ubiquitin/proteasome pathway, DNA excision-repair, and cell signalling via protein kinases []

Probab=95.77  E-value=0.016  Score=42.40  Aligned_cols=36  Identities=31%  Similarity=0.328  Sum_probs=29.8

Q ss_pred             hhhhhHHHhcCCCChHHHHHHHHHhCCCCcHHHHHHHH
Q 008149           16 HIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFI   53 (576)
Q Consensus        16 ~s~~r~~li~MGFs~e~V~kAIqe~Ge~~~~~~Ile~L   53 (576)
                      ..+...+|+.|||+.+.+.+|++..|. + ++.=+++|
T Consensus         2 ~~~~v~~L~~mGf~~~~~~~AL~~~~~-n-ve~A~~~L   37 (37)
T PF00627_consen    2 DEEKVQQLMEMGFSREQAREALRACNG-N-VERAVDWL   37 (37)
T ss_dssp             HHHHHHHHHHHTS-HHHHHHHHHHTTT-S-HHHHHHHH
T ss_pred             CHHHHHHHHHcCCCHHHHHHHHHHcCC-C-HHHHHHhC
Confidence            456788999999999999999999887 5 77777775

The human homologue of yeast Rad23A is one example of a nucleotide excision-repair protein that contains both an internal and a C-terminal UBA domain. The solution structure of human Rad23A UBA(2) showed that the domain forms a compact three-helix bundle []. Comparison of the structures of UBA(1) and UBA(2) reveals that both form very similar folds and have a conserved large hydrophobic surface patch which may be a common protein-interacting surface present in diverse UBA domains. Evidence that ubiquitin binds to UBA domains leads to the prediction that the hydrophobic surface patch of UBA domains interacts with the hydrophobic surface on the five-stranded beta-sheet of ubiquitin []. This domain is similar in sequence to the N-terminal domain of translation elongation factor EF1B (or EF-Ts) from bacteria, mitochondria and chloroplasts. More information about EF1B (EF-Ts) proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005515 protein binding; PDB: 2DAI_A 2OO9_C 2JUJ_A 1WHC_A 1YLA_A 2O25_B 3K9O_A 3K9P_A 3F92_A 3E46_A ....

>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

Probab=95.74  E-value=0.025  Score=45.43  Aligned_cols=79  Identities=15%  Similarity=0.130  Sum_probs=52.1

Q ss_pred             cccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCccEEE
Q 008149          445 TMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDFVI  524 (576)
Q Consensus       445 ~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~DLVI  524 (576)
                      +++|+.||.|++...+...+  ...++++|+++.+....+............+...|+.+...       ...+++|+|+
T Consensus         1 ~ildig~G~G~~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~d~i~   71 (107)
T cd02440           1 RVLDLGCGTGALALALASGP--GARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPP-------EADESFDVII   71 (107)
T ss_pred             CeEEEcCCccHHHHHHhcCC--CCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhcc-------ccCCceEEEE
Confidence            57999999999998888733  24688999999887766532211111122234456655432       1236899999


Q ss_pred             ecCCCCCc
Q 008149          525 CQNSVPQI  532 (576)
Q Consensus       525 GGpPCQ~F  532 (576)
                      ..+||..+
T Consensus        72 ~~~~~~~~   79 (107)
T cd02440          72 SDPPLHHL   79 (107)
T ss_pred             Eccceeeh
Confidence            99998874

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).

>smart00165 UBA Ubiquitin associated domain

Probab=95.73  E-value=0.016  Score=41.89  Aligned_cols=35  Identities=31%  Similarity=0.309  Sum_probs=29.9

Q ss_pred             hhhHHHhcCCCChHHHHHHHHHhCCCCcHHHHHHHHH
Q 008149           18 EKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFIT   54 (576)
Q Consensus        18 ~~r~~li~MGFs~e~V~kAIqe~Ge~~~~~~Ile~Ll   54 (576)
                      +...+|++|||+++.+.+|++..|. + ++.-+++|+
T Consensus         3 ~~v~~L~~mGf~~~~a~~aL~~~~~-d-~~~A~~~L~   37 (37)
T smart00165        3 EKIDQLLEMGFSREEALKALRAANG-N-VERAAEYLL   37 (37)
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHhCC-C-HHHHHHHHC
Confidence            4678899999999999999999987 4 777788774

Present in Rad23, SNF1-like kinases. The newly-found UBA in p62 is known to bind ubiquitin.

>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species

Probab=95.68  E-value=0.039  Score=57.84  Aligned_cols=83  Identities=23%  Similarity=0.290  Sum_probs=54.9

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCC--ccccccccccChhhHHHhhhccCC
Q 008149          442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGE--LVQIEDIQALTTKKFESLIHKLGS  519 (576)
Q Consensus       442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~--l~~~~DI~~lt~~~Ie~l~~~~g~  519 (576)
                      .+-+||+|||=.|||++..-..|.  +-|++||.++.+....+.++.-++....  -++..|+-+.    +.. +.+.+.
T Consensus       123 ~gkrvLnlFsYTGgfsv~Aa~gGA--~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~----l~~-~~~~~~  195 (286)
T PF10672_consen  123 KGKRVLNLFSYTGGFSVAAAAGGA--KEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKF----LKR-LKKGGR  195 (286)
T ss_dssp             TTCEEEEET-TTTHHHHHHHHTTE--SEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHH----HHH-HHHTT-
T ss_pred             CCCceEEecCCCCHHHHHHHHCCC--CEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHH----HHH-HhcCCC
Confidence            356999999999999999989997  3488999999999999988865433211  2344565432    111 123468


Q ss_pred             ccEEEecCCCCCcc
Q 008149          520 IDFVICQNSVPQIP  533 (576)
Q Consensus       520 ~DLVIGGpPCQ~FS  533 (576)
                      ||+||-=||  .|+
T Consensus       196 fD~IIlDPP--sF~  207 (286)
T PF10672_consen  196 FDLIILDPP--SFA  207 (286)
T ss_dssp             EEEEEE--S--SEE
T ss_pred             CCEEEECCC--CCC
Confidence            999999999  665

The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.

>KOG0919 consensus C-5 cytosine-specific DNA methylase [Transcription]

Probab=95.67  E-value=0.0084  Score=61.65  Aligned_cols=51  Identities=16%  Similarity=0.372  Sum_probs=46.4

Q ss_pred             ccCCCChhhHHHHhcCCCCCcccCCCChHHHHHHhhhhhccccchhhhccc
Q 008149          386 KLGPVDPEHIELILGYPSNHTQAAGNSLTARLESLRHCFQTDTLGYHLSVL  436 (576)
Q Consensus       386 ~~~ple~~E~E~i~GfP~~~T~~~~~~~teR~k~Lg~sf~vdtv~~~lsvL  436 (576)
                      +|+=++|-|+-|++|||.++-=-.+++...||++||||.+|.+++++++.|
T Consensus       286 ~LRYFTprEvArLmgFPe~fefp~~~T~kq~YRLLGNSiNVkVV~~LIklL  336 (338)
T KOG0919|consen  286 RLRYFTPREVARLMGFPENFEFPPETTNKQKYRLLGNSINVKVVGELIKLL  336 (338)
T ss_pred             HhhccCHHHHHHHcCCCcccCCCcchhHHHHHHHhcCcccceeHHHHHHHh
Confidence            678899999999999999987667888899999999999999999988765

>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2

Probab=95.66  E-value=0.014  Score=62.20  Aligned_cols=81  Identities=21%  Similarity=0.238  Sum_probs=45.6

Q ss_pred             cccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChh-----hHHHhh---hc
Q 008149          445 TMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTK-----KFESLI---HK  516 (576)
Q Consensus       445 ~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~-----~Ie~l~---~~  516 (576)
                      ++||||||+|.+++.|...+   +-|++||+++.+.+.-+.+-..++-....+...+..++...     ++..+.   ..
T Consensus       199 ~vlDlycG~G~fsl~la~~~---~~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~~~~~~~~~~~r~~~~~~~~~~~  275 (352)
T PF05958_consen  199 DVLDLYCGVGTFSLPLAKKA---KKVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDAEDFAKALAKAREFNRLKGIDLK  275 (352)
T ss_dssp             EEEEES-TTTCCHHHHHCCS---SEEEEEES-HHHHHHHHHHHHHTT--SEEEEE--SHHCCCHHCCS-GGTTGGGS-GG
T ss_pred             cEEEEeecCCHHHHHHHhhC---CeEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeeccchhHHHHhhHHHHhhhhhhhh
Confidence            79999999999999997765   45899999999988777765443322222334444443321     110000   01


Q ss_pred             cCCccEEEecCC
Q 008149          517 LGSIDFVICQNS  528 (576)
Q Consensus       517 ~g~~DLVIGGpP  528 (576)
                      ...+|+|+==||
T Consensus       276 ~~~~d~vilDPP  287 (352)
T PF05958_consen  276 SFKFDAVILDPP  287 (352)
T ss_dssp             CTTESEEEE---
T ss_pred             hcCCCEEEEcCC
Confidence            126899998887

1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.

>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional

Probab=95.65  E-value=0.021  Score=61.86  Aligned_cols=76  Identities=21%  Similarity=0.227  Sum_probs=52.2

Q ss_pred             CCcccccCCCCChhHHHHH-HcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 008149          443 GLTMLSVFSGIGGAEVTLH-RLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  521 (576)
Q Consensus       443 ~l~VLsLFSGiGG~slGL~-~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~D  521 (576)
                      +.+|||+|||+|.+++-+. ..|.  ..|+++|+|+.+.+..+.|...++.....+..+|+..+        +...+.||
T Consensus        58 ~~~vLDl~aGsG~~~l~~a~~~~~--~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~--------l~~~~~fD  127 (382)
T PRK04338         58 RESVLDALSASGIRGIRYALETGV--EKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANAL--------LHEERKFD  127 (382)
T ss_pred             CCEEEECCCcccHHHHHHHHHCCC--CEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHH--------HhhcCCCC
Confidence            3689999999999998874 4564  45899999999999999877544322222344554332        11124689


Q ss_pred             EEEecCC
Q 008149          522 FVICQNS  528 (576)
Q Consensus       522 LVIGGpP  528 (576)
                      +|+-=||
T Consensus       128 ~V~lDP~  134 (382)
T PRK04338        128 VVDIDPF  134 (382)
T ss_pred             EEEECCC
Confidence            9988766

>cd00194 UBA Ubiquitin Associated domain

Probab=95.63  E-value=0.024  Score=41.18  Aligned_cols=35  Identities=34%  Similarity=0.383  Sum_probs=30.7

Q ss_pred             hhhHHHhcCCCChHHHHHHHHHhCCCCcHHHHHHHHH
Q 008149           18 EKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFIT   54 (576)
Q Consensus        18 ~~r~~li~MGFs~e~V~kAIqe~Ge~~~~~~Ile~Ll   54 (576)
                      +....|++|||+++.+..|++..+. | ++.-+++|+
T Consensus         3 ~~v~~L~~mGf~~~~~~~AL~~~~~-d-~~~A~~~L~   37 (38)
T cd00194           3 EKLEQLLEMGFSREEARKALRATNN-N-VERAVEWLL   37 (38)
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHhCC-C-HHHHHHHHh
Confidence            4678899999999999999999887 5 788888886

The UBA domain is a commonly occurring sequence motif in some members of the ubiquitination pathway, UV excision repair proteins, and certain protein kinases. Although its specific role is so far unknown, it has been suggested that UBA domains are involved in conferring protein target specificity. The domain, a compact three helix bundle, has a conserved GFP-loop and the proline is thought to be critical for binding. The UBA domain is distinct from the conserved three helical domain seen in the N-terminus of EF-TS and eukaryotic NAC proteins.

>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific

Probab=95.61  E-value=0.027  Score=55.50  Aligned_cols=82  Identities=15%  Similarity=0.148  Sum_probs=57.7

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 008149          442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  521 (576)
Q Consensus       442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~D  521 (576)
                      .+.+|||+.||.|.+...+....-. ..++++|+++.+.+..+.+....+.....+..+|+.+.-         ..+.+|
T Consensus        87 ~~~~ilDig~G~G~~~~~l~~~~~~-~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~---------~~~~fD  156 (251)
T TIGR03534        87 GPLRVLDLGTGSGAIALALAKERPD-ARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFEPL---------PGGKFD  156 (251)
T ss_pred             CCCeEEEEeCcHhHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhccC---------cCCcee
Confidence            4568999999999999988876322 247899999999888887765433222234456654311         125799


Q ss_pred             EEEecCCCCCcc
Q 008149          522 FVICQNSVPQIP  533 (576)
Q Consensus       522 LVIGGpPCQ~FS  533 (576)
                      +|+.-||+...+
T Consensus       157 ~Vi~npPy~~~~  168 (251)
T TIGR03534       157 LIVSNPPYIPEA  168 (251)
T ss_pred             EEEECCCCCchh
Confidence            999999988765

Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.

>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=95.61  E-value=0.014  Score=64.22  Aligned_cols=78  Identities=18%  Similarity=0.191  Sum_probs=52.5

Q ss_pred             CCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCccE
Q 008149          443 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDF  522 (576)
Q Consensus       443 ~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~DL  522 (576)
                      +-+|+|||||+|+|++.|..-.   +-|.++|+++.+...-+.+=..++-....++.+|..++...--     ....+|+
T Consensus       294 ~~~vlDlYCGvG~f~l~lA~~~---~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~~~-----~~~~~d~  365 (432)
T COG2265         294 GERVLDLYCGVGTFGLPLAKRV---KKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPAWW-----EGYKPDV  365 (432)
T ss_pred             CCEEEEeccCCChhhhhhcccC---CEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhhcc-----ccCCCCE
Confidence            4689999999999999988655   4589999999999888776443322222334455444432211     1136799


Q ss_pred             EEecCC
Q 008149          523 VICQNS  528 (576)
Q Consensus       523 VIGGpP  528 (576)
                      |+==||
T Consensus       366 VvvDPP  371 (432)
T COG2265         366 VVVDPP  371 (432)
T ss_pred             EEECCC
Confidence            988777

>PRK14903 16S rRNA methyltransferase B; Provisional

Probab=95.56  E-value=0.031  Score=61.25  Aligned_cols=86  Identities=14%  Similarity=0.289  Sum_probs=60.0

Q ss_pred             CCCcccccCCCCChhHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 008149          442 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI  520 (576)
Q Consensus       442 ~~l~VLsLFSGiGG~slGL~~a-Gi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~  520 (576)
                      .+-+|||++||.||.+..+..+ |-. -.|+++|+++...+..+.+....+.....+...|.+++..     ..  .+.|
T Consensus       237 ~g~~VLD~cagpGgkt~~la~~~~~~-g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~-----~~--~~~f  308 (431)
T PRK14903        237 PGLRVLDTCAAPGGKTTAIAELMKDQ-GKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTE-----YV--QDTF  308 (431)
T ss_pred             CCCEEEEeCCCccHHHHHHHHHcCCC-CEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhh-----hh--hccC
Confidence            3568999999999998877654 111 2489999999999999887665432222244566655431     11  1469


Q ss_pred             cEEEecCCCCCcccc
Q 008149          521 DFVICQNSVPQIPNS  535 (576)
Q Consensus       521 DLVIGGpPCQ~FS~a  535 (576)
                      |.|+-=+||.++...
T Consensus       309 D~Vl~DaPCsg~G~~  323 (431)
T PRK14903        309 DRILVDAPCTSLGTA  323 (431)
T ss_pred             CEEEECCCCCCCccc
Confidence            999999999888653

>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]

Probab=95.49  E-value=0.062  Score=58.65  Aligned_cols=106  Identities=19%  Similarity=0.227  Sum_probs=74.8

Q ss_pred             CCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCC--ccccccccccChhhHHHhhhccCCc
Q 008149          443 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGE--LVQIEDIQALTTKKFESLIHKLGSI  520 (576)
Q Consensus       443 ~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~--l~~~~DI~~lt~~~Ie~l~~~~g~~  520 (576)
                      |=+||+|||=.|||++..-..|-  .-|.+||++..+...-+.|..-++..+.  .++.+|+-+.    ++....+-..|
T Consensus       218 GkrvLNlFsYTGgfSv~Aa~gGA--~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~----l~~~~~~g~~f  291 (393)
T COG1092         218 GKRVLNLFSYTGGFSVHAALGGA--SEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKW----LRKAERRGEKF  291 (393)
T ss_pred             CCeEEEecccCcHHHHHHHhcCC--CceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHH----HHHHHhcCCcc
Confidence            77899999999999999999998  3488999999999998888765543322  2455666543    22222222389


Q ss_pred             cEEEecCCCCCccccCCCCCCCCccccccCCCCCCCCcchHHHHHHHHHHhhcc
Q 008149          521 DFVICQNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVRSM  574 (576)
Q Consensus       521 DLVIGGpPCQ~FS~agr~~~~~~~~~aG~R~Gl~D~Rs~Lf~EyvRIV~~vK~~  574 (576)
                      ||||-=||  .|+.+              .+   +. -+++..|.+++.....+
T Consensus       292 DlIilDPP--sF~r~--------------k~---~~-~~~~rdy~~l~~~~~~i  325 (393)
T COG1092         292 DLIILDPP--SFARS--------------KK---QE-FSAQRDYKDLNDLALRL  325 (393)
T ss_pred             cEEEECCc--ccccC--------------cc---cc-hhHHHHHHHHHHHHHHH
Confidence            99999999  56632              11   12 66788888888776544

>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase

Probab=95.44  E-value=0.019  Score=61.23  Aligned_cols=84  Identities=8%  Similarity=0.062  Sum_probs=55.1

Q ss_pred             CcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHH--h--hhc---
Q 008149          444 LTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFES--L--IHK---  516 (576)
Q Consensus       444 l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~--l--~~~---  516 (576)
                      -+|||||||.|.+++.|.+..   +-|++||+++.+.+..+.+...++-....++.+|+.++-......  +  ...   
T Consensus       199 ~~vlDl~~G~G~~sl~la~~~---~~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~  275 (353)
T TIGR02143       199 GDLLELYCGNGNFSLALAQNF---RRVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEEFTQAMNGVREFRRLKGIDL  275 (353)
T ss_pred             CcEEEEeccccHHHHHHHHhC---CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHHHHHHHhhcccccccccccc
Confidence            369999999999999888764   258999999999999998775443222224566765543211000  0  000   


Q ss_pred             -cCCccEEEecCCCC
Q 008149          517 -LGSIDFVICQNSVP  530 (576)
Q Consensus       517 -~g~~DLVIGGpPCQ  530 (576)
                       ...+|+|+=-||=.
T Consensus       276 ~~~~~d~v~lDPPR~  290 (353)
T TIGR02143       276 KSYNCSTIFVDPPRA  290 (353)
T ss_pred             ccCCCCEEEECCCCC
Confidence             01379999999943

This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.

>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family

Probab=95.26  E-value=0.019  Score=64.04  Aligned_cols=88  Identities=11%  Similarity=0.029  Sum_probs=53.6

Q ss_pred             CCCcccccCCCCChhHHHHHHcC--------CceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHh
Q 008149          442 GGLTMLSVFSGIGGAEVTLHRLG--------IKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESL  513 (576)
Q Consensus       442 ~~l~VLsLFSGiGG~slGL~~aG--------i~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l  513 (576)
                      ...+|+|..||+|+|-+++-...        +. ..+.++|||+.+....+..+...+..+..+...|.-.-+....   
T Consensus        31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~-~~i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~~~~~~---  106 (524)
T TIGR02987        31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVE-LNIYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSYVLLNI---  106 (524)
T ss_pred             cceEEEeCCCCccHHHHHHHHHHHhcCCcccce-eeeeeechhHHHHHHHHHHHhhcCCCCceeeeccccccccccc---
Confidence            45799999999999988875422        22 4578999999998877766543321111122222111000000   


Q ss_pred             hhccCCccEEEecCCCCCcc
Q 008149          514 IHKLGSIDFVICQNSVPQIP  533 (576)
Q Consensus       514 ~~~~g~~DLVIGGpPCQ~FS  533 (576)
                      ....+.||+|||=||=-...
T Consensus       107 ~~~~~~fD~IIgNPPy~~~k  126 (524)
T TIGR02987       107 ESYLDLFDIVITNPPYGRLK  126 (524)
T ss_pred             ccccCcccEEEeCCCccccC
Confidence            01236899999999977653

Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.

>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional

Probab=95.24  E-value=0.037  Score=56.32  Aligned_cols=96  Identities=15%  Similarity=0.081  Sum_probs=63.3

Q ss_pred             HHhhhhhccc--cchhhhccccccCCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCC
Q 008149          418 ESLRHCFQTD--TLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGE  495 (576)
Q Consensus       418 k~Lg~sf~vd--tv~~~lsvLK~~f~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~  495 (576)
                      |.||-.|=+|  ++....+.+.  ...+-+|||+-||.|.++..+.+.+.   -++++|+|+.....++.....  ....
T Consensus         5 k~~GQnfl~d~~~~~~iv~~~~--~~~~~~VLEIG~G~G~lt~~L~~~~~---~v~~vEid~~~~~~l~~~~~~--~~~v   77 (258)
T PRK14896          5 KKLGQHFLIDDRVVDRIVEYAE--DTDGDPVLEIGPGKGALTDELAKRAK---KVYAIELDPRLAEFLRDDEIA--AGNV   77 (258)
T ss_pred             CcCCccccCCHHHHHHHHHhcC--CCCcCeEEEEeCccCHHHHHHHHhCC---EEEEEECCHHHHHHHHHHhcc--CCCE
Confidence            3445555333  3333333332  12356899999999999999999874   378999999998888765432  1122


Q ss_pred             ccccccccccChhhHHHhhhccCCccEEEecCCCC
Q 008149          496 LVQIEDIQALTTKKFESLIHKLGSIDFVICQNSVP  530 (576)
Q Consensus       496 l~~~~DI~~lt~~~Ie~l~~~~g~~DLVIGGpPCQ  530 (576)
                      .++.+|+.++.-          ..+|+|+|-.|=+
T Consensus        78 ~ii~~D~~~~~~----------~~~d~Vv~NlPy~  102 (258)
T PRK14896         78 EIIEGDALKVDL----------PEFNKVVSNLPYQ  102 (258)
T ss_pred             EEEEeccccCCc----------hhceEEEEcCCcc
Confidence            356778876542          3469999987744

>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase

Probab=94.86  E-value=0.091  Score=51.54  Aligned_cols=82  Identities=18%  Similarity=0.208  Sum_probs=53.7

Q ss_pred             CCCcccccCCCCChhHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 008149          442 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI  520 (576)
Q Consensus       442 ~~l~VLsLFSGiGG~slGL~~a-Gi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~  520 (576)
                      .+-+|||+.||.|.+...+.+. |-. ..|+++|+++...+..+......+.....+..+|+.++..        ..+.+
T Consensus        45 ~~~~vLDiGcG~G~~~~~la~~~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~--------~~~~f  115 (231)
T TIGR02752        45 AGTSALDVCCGTADWSIALAEAVGPE-GHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELPF--------DDNSF  115 (231)
T ss_pred             CCCEEEEeCCCcCHHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCCC--------CCCCc
Confidence            4678999999999998877654 322 2478999999887777665433222222244566655431        12479


Q ss_pred             cEEEecCCCCCc
Q 008149          521 DFVICQNSVPQI  532 (576)
Q Consensus       521 DLVIGGpPCQ~F  532 (576)
                      |+|+.+...+.+
T Consensus       116 D~V~~~~~l~~~  127 (231)
T TIGR02752       116 DYVTIGFGLRNV  127 (231)
T ss_pred             cEEEEecccccC
Confidence            999987765554

MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.

>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase

Probab=94.60  E-value=0.063  Score=58.14  Aligned_cols=77  Identities=12%  Similarity=0.073  Sum_probs=49.3

Q ss_pred             CCcccccCCCCChhHHHHHHc--CCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 008149          443 GLTMLSVFSGIGGAEVTLHRL--GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI  520 (576)
Q Consensus       443 ~l~VLsLFSGiGG~slGL~~a--Gi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~  520 (576)
                      +++|||+|||+|-..+-+..-  |.  +.|+++|+|+.|.+.++.|...++.....+...|...+-.       .....|
T Consensus        45 ~~~vLD~faGsG~rgir~a~e~~ga--~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~-------~~~~~f  115 (374)
T TIGR00308        45 YINIADALSASGIRAIRYAHEIEGV--REVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLR-------YRNRKF  115 (374)
T ss_pred             CCEEEECCCchhHHHHHHHhhCCCC--CEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHH-------HhCCCC
Confidence            589999999999776555443  66  4589999999999999988754321111233344433211       112458


Q ss_pred             cEEEecCC
Q 008149          521 DFVICQNS  528 (576)
Q Consensus       521 DLVIGGpP  528 (576)
                      |+|.==||
T Consensus       116 DvIdlDPf  123 (374)
T TIGR00308       116 HVIDIDPF  123 (374)
T ss_pred             CEEEeCCC
Confidence            88876554

This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.

>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB

Probab=94.59  E-value=0.11  Score=56.78  Aligned_cols=85  Identities=13%  Similarity=0.114  Sum_probs=58.3

Q ss_pred             CCCcccccCCCCChhHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCcc--ccccccccChhhHHHhhhccC
Q 008149          442 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTGELV--QIEDIQALTTKKFESLIHKLG  518 (576)
Q Consensus       442 ~~l~VLsLFSGiGG~slGL~~a-Gi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~--~~~DI~~lt~~~Ie~l~~~~g  518 (576)
                      .+-+|||++||.||.+.-+.++ + . ..|+++|+++...+..+.+....+.. ..+  ..+|...+..     + ...+
T Consensus       238 ~g~~VLDlcag~G~kt~~la~~~~-~-~~v~a~D~~~~~l~~~~~n~~r~g~~-~~v~~~~~d~~~~~~-----~-~~~~  308 (426)
T TIGR00563       238 NEETILDACAAPGGKTTHILELAP-Q-AQVVALDIHEHRLKRVYENLKRLGLT-IKAETKDGDGRGPSQ-----W-AENE  308 (426)
T ss_pred             CCCeEEEeCCCccHHHHHHHHHcC-C-CeEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEeccccccccc-----c-cccc
Confidence            3578999999999999887764 3 2 24899999999988888877544322 111  2344433221     0 0125


Q ss_pred             CccEEEecCCCCCcccc
Q 008149          519 SIDFVICQNSVPQIPNS  535 (576)
Q Consensus       519 ~~DLVIGGpPCQ~FS~a  535 (576)
                      .||.|+-.+||.++..-
T Consensus       309 ~fD~VllDaPcSg~G~~  325 (426)
T TIGR00563       309 QFDRILLDAPCSATGVI  325 (426)
T ss_pred             ccCEEEEcCCCCCCccc
Confidence            79999999999998754

The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.

>TIGR00536 hemK_fam HemK family putative methylases

Probab=94.55  E-value=0.078  Score=54.64  Aligned_cols=80  Identities=14%  Similarity=0.078  Sum_probs=55.9

Q ss_pred             CcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCC-CccccccccccChhhHHHhhhccCCccE
Q 008149          444 LTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGSIDF  522 (576)
Q Consensus       444 l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g-~l~~~~DI~~lt~~~Ie~l~~~~g~~DL  522 (576)
                      .+|||++||.|.+.+.+....-. ..|.++|+++.+.+..+.+....+... ..+..+|+.+-    +.     ...||+
T Consensus       116 ~~vLDlG~GsG~i~l~la~~~~~-~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~----~~-----~~~fDl  185 (284)
T TIGR00536       116 LHILDLGTGSGCIALALAYEFPN-AEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEP----LA-----GQKIDI  185 (284)
T ss_pred             CEEEEEeccHhHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhcc----Cc-----CCCccE
Confidence            58999999999999988876422 247899999999988887765432221 22344555321    10     126999


Q ss_pred             EEecCCCCCcc
Q 008149          523 VICQNSVPQIP  533 (576)
Q Consensus       523 VIGGpPCQ~FS  533 (576)
                      |+.-||.-+.+
T Consensus       186 IvsNPPyi~~~  196 (284)
T TIGR00536       186 IVSNPPYIDEE  196 (284)
T ss_pred             EEECCCCCCcc
Confidence            99999998765

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.

>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase

Probab=94.52  E-value=0.04  Score=53.32  Aligned_cols=103  Identities=18%  Similarity=0.198  Sum_probs=58.9

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCcee--------eEEEeeCCHHHHHHHHHHhhhcCCCCC-ccccccccccChhhHHH
Q 008149          442 GGLTMLSVFSGIGGAEVTLHRLGIKLK--------GVISIETSETNRRILKRWWESSGQTGE-LVQIEDIQALTTKKFES  512 (576)
Q Consensus       442 ~~l~VLsLFSGiGG~slGL~~aGi~~k--------~vvavEid~~a~~t~k~~~~~tn~~g~-l~~~~DI~~lt~~~Ie~  512 (576)
                      .+-.|||-|||.|++-+-....+..+.        .++++|||+.+.+.-+.+-...+.... .+...|.+++..     
T Consensus        28 ~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~~~l~~-----  102 (179)
T PF01170_consen   28 PGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWDARELPL-----  102 (179)
T ss_dssp             TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--GGGGGG-----
T ss_pred             CCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEecchhhccc-----
Confidence            456899999999998654333333221        167999999998888877665432221 133456665551     


Q ss_pred             hhhccCCccEEEecCCCCCccccCCCCCCCCccccccCCCCCCCCcchHHHHHHHHHH
Q 008149          513 LIHKLGSIDFVICQNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQR  570 (576)
Q Consensus       513 l~~~~g~~DLVIGGpPCQ~FS~agr~~~~~~~~~aG~R~Gl~D~Rs~Lf~EyvRIV~~  570 (576)
                         ..+.+|+||.=||=      |            .|-|....-..||.++++.+.+
T Consensus       103 ---~~~~~d~IvtnPPy------G------------~r~~~~~~~~~ly~~~~~~~~~  139 (179)
T PF01170_consen  103 ---PDGSVDAIVTNPPY------G------------RRLGSKKDLEKLYRQFLRELKR  139 (179)
T ss_dssp             ---TTSBSCEEEEE--S------T------------TSHCHHHHHHHHHHHHHHHHHC
T ss_pred             ---ccCCCCEEEECcch------h------------hhccCHHHHHHHHHHHHHHHHH
Confidence               12579999998883      1            2222212225677777777766

It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.

>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed

Probab=94.32  E-value=0.11  Score=53.26  Aligned_cols=93  Identities=16%  Similarity=0.127  Sum_probs=62.9

Q ss_pred             hhhhhccc--cchhhhccccccCCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCcc
Q 008149          420 LRHCFQTD--TLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELV  497 (576)
Q Consensus       420 Lg~sf~vd--tv~~~lsvLK~~f~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~  497 (576)
                      +|..|-++  .+...+..+.  ...+-+|||+=||.|.++..+.+.|-   -|+++|+|+.....++..+..   ....+
T Consensus        20 ~gq~fl~~~~i~~~i~~~l~--~~~~~~VLEiG~G~G~lt~~L~~~~~---~v~avE~d~~~~~~~~~~~~~---~~v~~   91 (272)
T PRK00274         20 LGQNFLIDENILDKIVDAAG--PQPGDNVLEIGPGLGALTEPLLERAA---KVTAVEIDRDLAPILAETFAE---DNLTI   91 (272)
T ss_pred             cCcCcCCCHHHHHHHHHhcC--CCCcCeEEEeCCCccHHHHHHHHhCC---cEEEEECCHHHHHHHHHhhcc---CceEE
Confidence            45545333  3333344332  23457899999999999999998874   478999999998888765421   23346


Q ss_pred             ccccccccChhhHHHhhhccCCccEEEecCC
Q 008149          498 QIEDIQALTTKKFESLIHKLGSIDFVICQNS  528 (576)
Q Consensus       498 ~~~DI~~lt~~~Ie~l~~~~g~~DLVIGGpP  528 (576)
                      +.+|+.++...++        ..|+|+|-+|
T Consensus        92 i~~D~~~~~~~~~--------~~~~vv~NlP  114 (272)
T PRK00274         92 IEGDALKVDLSEL--------QPLKVVANLP  114 (272)
T ss_pred             EEChhhcCCHHHc--------CcceEEEeCC
Confidence            6788888764321        1588999888

>COG5207 UBP14 Isopeptidase T [Posttranslational modification, protein turnover, chaperones]

Probab=94.32  E-value=0.17  Score=56.77  Aligned_cols=93  Identities=18%  Similarity=0.154  Sum_probs=64.1

Q ss_pred             hhHHHhcCCCChHHHHHHHHHhCCCCcHHHHHHHHHHhhhcccccccCCCCCCCCC----CCCCCCchhhhhhh-hHHHH
Q 008149           19 KRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQISENFEKETDDAPHDND----GTNEDKSDETLYGT-MEITL   93 (576)
Q Consensus        19 ~r~~li~MGFs~e~V~kAIqe~Ge~~~~~~Ile~Ll~~q~l~~~~~e~~ds~~~~~----~~ne~~~~e~~~~~-~~k~~   93 (576)
                      ..++|++||||.+...||+=-.|..| .+.-...|+..          .|+.|-++    ..|-   +..-++. ..+..
T Consensus       561 ~I~qL~~mGfp~~~~~rAL~~tgNqD-aEsAMNWLFqH----------MdDPdlndP~~~~~~v---PKkDkeVdE~~~~  626 (749)
T COG5207         561 LIRQLVDMGFPEEDAARALGITGNQD-AESAMNWLFQH----------MDDPDLNDPFVPPPNV---PKKDKEVDESKAR  626 (749)
T ss_pred             HHHHHHHcCCCHHHHHHHHhhccCcc-hHHHHHHHHhh----------ccCcccCCCCCCCCCC---CcccccccHHHHH
Confidence            56899999999999999999999998 89999999853          22222111    1110   0000122 24777


Q ss_pred             HHHhcCCCHHHHHHHHHHhCCCCChhhhhHhHhh
Q 008149           94 QLLEMGFSENQVSLAIEKFGSKTPISELADKIFS  127 (576)
Q Consensus        94 ~L~~MGFseeEas~AI~r~G~da~i~eLvD~I~A  127 (576)
                      +|+.|||....+..|+-.-..|  +.--|+-|+-
T Consensus       627 Slle~Gln~n~~Rkal~~~n~d--~~r~V~w~~N  658 (749)
T COG5207         627 SLLENGLNPNLCRKALMDMNTD--SKRRVVWCIN  658 (749)
T ss_pred             HHHHcCCCHHHHHHHHHHccCC--chheEEEEEe
Confidence            9999999999999999877766  3444444443

>PRK14968 putative methyltransferase; Provisional

Probab=94.30  E-value=0.14  Score=48.06  Aligned_cols=78  Identities=15%  Similarity=0.096  Sum_probs=52.5

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCC--CccccccccccChhhHHHhhhccCC
Q 008149          442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG--ELVQIEDIQALTTKKFESLIHKLGS  519 (576)
Q Consensus       442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g--~l~~~~DI~~lt~~~Ie~l~~~~g~  519 (576)
                      .+-++||+.||.|.+...+.+.|.   .++++|+++.+....+.+....+...  ..+...|..+-    +   .  -+.
T Consensus        23 ~~~~vLd~G~G~G~~~~~l~~~~~---~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~----~---~--~~~   90 (188)
T PRK14968         23 KGDRVLEVGTGSGIVAIVAAKNGK---KVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEP----F---R--GDK   90 (188)
T ss_pred             CCCEEEEEccccCHHHHHHHhhcc---eEEEEECCHHHHHHHHHHHHHcCCCCcceEEEecccccc----c---c--ccC
Confidence            456899999999999999888864   36889999988777766543322111  22334554321    1   1  126


Q ss_pred             ccEEEecCCCCC
Q 008149          520 IDFVICQNSVPQ  531 (576)
Q Consensus       520 ~DLVIGGpPCQ~  531 (576)
                      +|+|+..+|+..
T Consensus        91 ~d~vi~n~p~~~  102 (188)
T PRK14968         91 FDVILFNPPYLP  102 (188)
T ss_pred             ceEEEECCCcCC
Confidence            999999998754

>COG4123 Predicted O-methyltransferase [General function prediction only]

Probab=94.23  E-value=0.076  Score=54.73  Aligned_cols=101  Identities=19%  Similarity=0.248  Sum_probs=61.7

Q ss_pred             hhhhccccchhhhccccccCCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCC-Ccccc
Q 008149          421 RHCFQTDTLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQI  499 (576)
Q Consensus       421 g~sf~vdtv~~~lsvLK~~f~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g-~l~~~  499 (576)
                      +.++++|.+  +|.-.-.. +..-+||||=||+|.+.+.+.+-==+ .-+++||+++.+..--+++-..++... ..+++
T Consensus        26 ~~~~~~Dai--LL~~~~~~-~~~~~IlDlGaG~G~l~L~la~r~~~-a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~  101 (248)
T COG4123          26 GFRYGTDAI--LLAAFAPV-PKKGRILDLGAGNGALGLLLAQRTEK-AKIVGVEIQEEAAEMAQRNVALNPLEERIQVIE  101 (248)
T ss_pred             ccccccHHH--HHHhhccc-ccCCeEEEecCCcCHHHHHHhccCCC-CcEEEEEeCHHHHHHHHHHHHhCcchhceeEeh
Confidence            456677743  22222111 22678999999999999988765212 236899999998776555433221111 12556


Q ss_pred             ccccccChhhHHHhhhccCCccEEEecCCCCC
Q 008149          500 EDIQALTTKKFESLIHKLGSIDFVICQNSVPQ  531 (576)
Q Consensus       500 ~DI~~lt~~~Ie~l~~~~g~~DLVIGGpPCQ~  531 (576)
                      .||.++....      .+..||+||.-||=-.
T Consensus       102 ~Di~~~~~~~------~~~~fD~Ii~NPPyf~  127 (248)
T COG4123         102 ADIKEFLKAL------VFASFDLIICNPPYFK  127 (248)
T ss_pred             hhHHHhhhcc------cccccCEEEeCCCCCC
Confidence            7777665321      2346999999888544

>TIGR00755 ksgA dimethyladenosine transferase

Probab=94.22  E-value=0.09  Score=53.12  Aligned_cols=75  Identities=17%  Similarity=0.112  Sum_probs=54.4

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 008149          442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  521 (576)
Q Consensus       442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~D  521 (576)
                      .+-+|||+.||.|.++..+.+.+-   -++++|+|+.....++..+..  .....++.+|+.++....       +...+
T Consensus        29 ~~~~VLEiG~G~G~lt~~L~~~~~---~v~~iE~d~~~~~~l~~~~~~--~~~v~v~~~D~~~~~~~~-------~d~~~   96 (253)
T TIGR00755        29 EGDVVLEIGPGLGALTEPLLKRAK---KVTAIEIDPRLAEILRKLLSL--YERLEVIEGDALKVDLPD-------FPKQL   96 (253)
T ss_pred             CcCEEEEeCCCCCHHHHHHHHhCC---cEEEEECCHHHHHHHHHHhCc--CCcEEEEECchhcCChhH-------cCCcc
Confidence            457899999999999999999884   388999999998888766532  122235678887766321       11125


Q ss_pred             EEEecCC
Q 008149          522 FVICQNS  528 (576)
Q Consensus       522 LVIGGpP  528 (576)
                      +|+|..|
T Consensus        97 ~vvsNlP  103 (253)
T TIGR00755        97 KVVSNLP  103 (253)
T ss_pred             eEEEcCC
Confidence            8888887

Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase

>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional

Probab=94.20  E-value=0.1  Score=55.77  Aligned_cols=98  Identities=21%  Similarity=0.237  Sum_probs=60.6

Q ss_pred             HHhhhhhccccc----hhhhccccccCCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCC
Q 008149          418 ESLRHCFQTDTL----GYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQT  493 (576)
Q Consensus       418 k~Lg~sf~vdtv----~~~lsvLK~~f~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~  493 (576)
                      ..+...|+.+.+    ..+++.|....  .-+||||.||.|.+...+.+.+=.. .|.++|+++.+.+.-+.+...++..
T Consensus       170 ~~~pgvFs~~~lD~gt~lLl~~l~~~~--~g~VLDlGCG~G~ls~~la~~~p~~-~v~~vDis~~Al~~A~~nl~~n~l~  246 (342)
T PRK09489        170 KTLPGVFSRDGLDVGSQLLLSTLTPHT--KGKVLDVGCGAGVLSAVLARHSPKI-RLTLSDVSAAALESSRATLAANGLE  246 (342)
T ss_pred             EeCCCCCCCCCCCHHHHHHHHhccccC--CCeEEEeccCcCHHHHHHHHhCCCC-EEEEEECCHHHHHHHHHHHHHcCCC
Confidence            344445544433    33345444322  2379999999999998888764222 3789999999988877766543222


Q ss_pred             CCccccccccccChhhHHHhhhccCCccEEEecCCC
Q 008149          494 GELVQIEDIQALTTKKFESLIHKLGSIDFVICQNSV  529 (576)
Q Consensus       494 g~l~~~~DI~~lt~~~Ie~l~~~~g~~DLVIGGpPC  529 (576)
                      . .+...|+.+    .+      .+.||+|+..||=
T Consensus       247 ~-~~~~~D~~~----~~------~~~fDlIvsNPPF  271 (342)
T PRK09489        247 G-EVFASNVFS----DI------KGRFDMIISNPPF  271 (342)
T ss_pred             C-EEEEccccc----cc------CCCccEEEECCCc
Confidence            2 223344422    11      2579999998884

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=94.15  E-value=0.16  Score=43.59  Aligned_cols=74  Identities=23%  Similarity=0.334  Sum_probs=52.4

Q ss_pred             CCcccccCCCCChhHHHHHH--cCCceeeEEEeeCCHHHHHHHHHHhhhcCC-CCCccccccccccChhhHHHhhhccCC
Q 008149          443 GLTMLSVFSGIGGAEVTLHR--LGIKLKGVISIETSETNRRILKRWWESSGQ-TGELVQIEDIQALTTKKFESLIHKLGS  519 (576)
Q Consensus       443 ~l~VLsLFSGiGG~slGL~~--aGi~~k~vvavEid~~a~~t~k~~~~~tn~-~g~l~~~~DI~~lt~~~Ie~l~~~~g~  519 (576)
                      +-+||||=||.|.+.+.+.+  .|.+   |+++|+++...+..+........ ....++.+|+ ....       ...++
T Consensus         2 ~~~vLDlGcG~G~~~~~l~~~~~~~~---v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~-~~~~-------~~~~~   70 (112)
T PF12847_consen    2 GGRVLDLGCGTGRLSIALARLFPGAR---VVGVDISPEMLEIARERAAEEGLSDRITFVQGDA-EFDP-------DFLEP   70 (112)
T ss_dssp             TCEEEEETTTTSHHHHHHHHHHTTSE---EEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCC-HGGT-------TTSSC
T ss_pred             CCEEEEEcCcCCHHHHHHHhcCCCCE---EEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECcc-ccCc-------ccCCC
Confidence            45799999999999999998  7764   78999999999888887632221 2223456777 2221       12357


Q ss_pred             ccEEEecC
Q 008149          520 IDFVICQN  527 (576)
Q Consensus       520 ~DLVIGGp  527 (576)
                      +|+|+...
T Consensus        71 ~D~v~~~~   78 (112)
T PF12847_consen   71 FDLVICSG   78 (112)
T ss_dssp             EEEEEECS
T ss_pred             CCEEEECC
Confidence            99999655

...

>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase

Probab=94.13  E-value=0.16  Score=49.96  Aligned_cols=83  Identities=20%  Similarity=0.169  Sum_probs=55.4

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 008149          442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  521 (576)
Q Consensus       442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~D  521 (576)
                      .+-+|||+.||.|.++..|.+..-.--.|+++|+++......+.+....+.....+..+|..+.-.        ..+.||
T Consensus        77 ~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~--------~~~~fD  148 (215)
T TIGR00080        77 PGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWE--------PLAPYD  148 (215)
T ss_pred             CcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCc--------ccCCCC
Confidence            467899999999999988876532111378999999988877776654432222344566644211        124799


Q ss_pred             EEEecCCCCCc
Q 008149          522 FVICQNSVPQI  532 (576)
Q Consensus       522 LVIGGpPCQ~F  532 (576)
                      +|+-.+++...
T Consensus       149 ~Ii~~~~~~~~  159 (215)
T TIGR00080       149 RIYVTAAGPKI  159 (215)
T ss_pred             EEEEcCCcccc
Confidence            99987776654

Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.

>TIGR00406 prmA ribosomal protein L11 methyltransferase

Probab=94.13  E-value=0.1  Score=54.06  Aligned_cols=46  Identities=17%  Similarity=0.180  Sum_probs=39.4

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhh
Q 008149          442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWES  489 (576)
Q Consensus       442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~  489 (576)
                      .+.+|||+.||.|.+++++.++|.  ..|+++|+|+.+....+.+...
T Consensus       159 ~g~~VLDvGcGsG~lai~aa~~g~--~~V~avDid~~al~~a~~n~~~  204 (288)
T TIGR00406       159 KDKNVIDVGCGSGILSIAALKLGA--AKVVGIDIDPLAVESARKNAEL  204 (288)
T ss_pred             CCCEEEEeCCChhHHHHHHHHcCC--CeEEEEECCHHHHHHHHHHHHH
Confidence            467899999999999999999986  4589999999998888777653

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=94.12  E-value=0.2  Score=43.46  Aligned_cols=76  Identities=20%  Similarity=0.187  Sum_probs=48.3

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 008149          442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  521 (576)
Q Consensus       442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~D  521 (576)
                      .+.+||||.||.|.+..-+.+..=. ..++++|+++......+.+-...+.....+..+|+......       ..+.+|
T Consensus        19 ~~~~vldlG~G~G~~~~~l~~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~D   90 (124)
T TIGR02469        19 PGDVLWDIGAGSGSITIEAARLVPN-GRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALED-------SLPEPD   90 (124)
T ss_pred             CCCEEEEeCCCCCHHHHHHHHHCCC-ceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChh-------hcCCCC
Confidence            3568999999999999877664211 34789999999988877765433222222334554432110       114689


Q ss_pred             EEEe
Q 008149          522 FVIC  525 (576)
Q Consensus       522 LVIG  525 (576)
                      +|+-
T Consensus        91 ~v~~   94 (124)
T TIGR02469        91 RVFI   94 (124)
T ss_pred             EEEE
Confidence            8885

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase

Probab=94.10  E-value=0.15  Score=49.96  Aligned_cols=54  Identities=20%  Similarity=0.159  Sum_probs=40.1

Q ss_pred             hhccccccCCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhh
Q 008149          432 HLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWE  488 (576)
Q Consensus       432 ~lsvLK~~f~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~  488 (576)
                      ++..|......+.+|||+.||.|.+...+...+.   .|.++|+++......+....
T Consensus        45 ~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~---~v~gvD~s~~~i~~a~~~~~   98 (219)
T TIGR02021        45 LLDWLPKDPLKGKRVLDAGCGTGLLSIELAKRGA---IVKAVDISEQMVQMARNRAQ   98 (219)
T ss_pred             HHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHCCC---EEEEEECCHHHHHHHHHHHH
Confidence            3444442122467899999999999999988775   37899999998877766543

This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.

>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=94.06  E-value=0.075  Score=51.37  Aligned_cols=76  Identities=17%  Similarity=0.117  Sum_probs=56.0

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 008149          442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  521 (576)
Q Consensus       442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~D  521 (576)
                      .+.+++||=||||=++.|+...+-  +.|+++|||+.|.+++.+|-+... -...+.+.||.++-.        ..|-||
T Consensus        48 Egkkl~DLgcgcGmLs~a~sm~~~--e~vlGfDIdpeALEIf~rNaeEfE-vqidlLqcdildle~--------~~g~fD  116 (185)
T KOG3420|consen   48 EGKKLKDLGCGCGMLSIAFSMPKN--ESVLGFDIDPEALEIFTRNAEEFE-VQIDLLQCDILDLEL--------KGGIFD  116 (185)
T ss_pred             cCcchhhhcCchhhhHHHhhcCCC--ceEEeeecCHHHHHHHhhchHHhh-hhhheeeeeccchhc--------cCCeEe
Confidence            478899999999999999999986  569999999999999987644321 111234566665432        226789


Q ss_pred             EEEecCC
Q 008149          522 FVICQNS  528 (576)
Q Consensus       522 LVIGGpP  528 (576)
                      ..+=-||
T Consensus       117 taviNpp  123 (185)
T KOG3420|consen  117 TAVINPP  123 (185)
T ss_pred             eEEecCC
Confidence            8887776

>TIGR00138 gidB 16S rRNA methyltransferase GidB

Probab=93.87  E-value=0.13  Score=49.84  Aligned_cols=75  Identities=12%  Similarity=0.125  Sum_probs=51.6

Q ss_pred             CCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCccE
Q 008149          443 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDF  522 (576)
Q Consensus       443 ~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~DL  522 (576)
                      +.+|||+-||.|-+++.+..++-. ..|+++|+++......+.+....+.....++.+|+.++..         .+.+|+
T Consensus        43 ~~~vLDiGcGtG~~s~~la~~~~~-~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~~---------~~~fD~  112 (181)
T TIGR00138        43 GKKVIDIGSGAGFPGIPLAIARPE-LKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQH---------EEQFDV  112 (181)
T ss_pred             CCeEEEecCCCCccHHHHHHHCCC-CeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhccc---------cCCccE
Confidence            678999999999888877655422 2388999999887777766654432222345677766521         257999


Q ss_pred             EEecC
Q 008149          523 VICQN  527 (576)
Q Consensus       523 VIGGp  527 (576)
                      |+...
T Consensus       113 I~s~~  117 (181)
T TIGR00138       113 ITSRA  117 (181)
T ss_pred             EEehh
Confidence            98653

GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.

>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]

Probab=93.79  E-value=0.13  Score=53.56  Aligned_cols=78  Identities=18%  Similarity=0.295  Sum_probs=56.8

Q ss_pred             cccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCccEEE
Q 008149          445 TMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDFVI  524 (576)
Q Consensus       445 ~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~DLVI  524 (576)
                      +||||.+|.|-+.+++...+-. ..|+++|||+.|.++-+.|...++-       .++..+..+=++.   ..+.||+|+
T Consensus       113 ~ilDlGTGSG~iai~la~~~~~-~~V~a~Dis~~Al~~A~~Na~~~~l-------~~~~~~~~dlf~~---~~~~fDlIV  181 (280)
T COG2890         113 RILDLGTGSGAIAIALAKEGPD-AEVIAVDISPDALALARENAERNGL-------VRVLVVQSDLFEP---LRGKFDLIV  181 (280)
T ss_pred             cEEEecCChHHHHHHHHhhCcC-CeEEEEECCHHHHHHHHHHHHHcCC-------ccEEEEeeecccc---cCCceeEEE
Confidence            7999999999999999988754 3689999999999988887654431       2233333311111   125899999


Q ss_pred             ecCCCCCcc
Q 008149          525 CQNSVPQIP  533 (576)
Q Consensus       525 GGpPCQ~FS  533 (576)
                      .-||==+-+
T Consensus       182 sNPPYip~~  190 (280)
T COG2890         182 SNPPYIPAE  190 (280)
T ss_pred             eCCCCCCCc
Confidence            999977766

>PF09288 UBA_3: Fungal ubiquitin-associated domain ; InterPro: IPR015368 This C-terminal domain is found in ubiquitin binding proteins, it adopts a structure consisting of a three alpha-helix bundle

Probab=93.55  E-value=0.077  Score=42.98  Aligned_cols=42  Identities=17%  Similarity=0.230  Sum_probs=29.5

Q ss_pred             ccchhhhhHHHhcCCCChHHHHHHHHHhCCC-------CcHHHHHHHHH
Q 008149           13 EGLHIEKRASLLMMNFSVNEVDFALDKLGKD-------APVYELVDFIT   54 (576)
Q Consensus        13 ~~~~s~~r~~li~MGFs~e~V~kAIqe~Ge~-------~~~~~Ile~Ll   54 (576)
                      .++..+...+|..|||+.+.|..|++..|=.       .+.+.|||-||
T Consensus         6 ~Gi~~~lVd~F~~mGF~~dkVvevlrrlgik~~n~~dn~t~~~ilEELL   54 (55)
T PF09288_consen    6 YGIDKDLVDQFENMGFERDKVVEVLRRLGIKSMNGVDNETENKILEELL   54 (55)
T ss_dssp             ---SHHHHHHHHHHT--HHHHHHHHHHS--SS--SS--HHHHHHHHHHT
T ss_pred             cCCCHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCccchhHHHHHHHHh
Confidence            4567788999999999999999999998753       24567888776

This domain is predominantly found in fungi []. ; PDB: 1TTE_A.

>PRK11207 tellurite resistance protein TehB; Provisional

Probab=93.55  E-value=0.21  Score=48.71  Aligned_cols=74  Identities=19%  Similarity=0.189  Sum_probs=50.1

Q ss_pred             CCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCccE
Q 008149          443 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDF  522 (576)
Q Consensus       443 ~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~DL  522 (576)
                      +.+|||+=||.|..++-|.+.|.+   |.++|+++.+....+..-...+.........|+.+++.         .+.||+
T Consensus        31 ~~~vLDiGcG~G~~a~~La~~g~~---V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~---------~~~fD~   98 (197)
T PRK11207         31 PGKTLDLGCGNGRNSLYLAANGFD---VTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTF---------DGEYDF   98 (197)
T ss_pred             CCcEEEECCCCCHHHHHHHHCCCE---EEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCc---------CCCcCE
Confidence            468999999999999999998874   68899999988777665433222111223455544321         146899


Q ss_pred             EEecCC
Q 008149          523 VICQNS  528 (576)
Q Consensus       523 VIGGpP  528 (576)
                      |+....
T Consensus        99 I~~~~~  104 (197)
T PRK11207         99 ILSTVV  104 (197)
T ss_pred             EEEecc
Confidence            986543

>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2

Probab=93.51  E-value=0.063  Score=55.36  Aligned_cols=108  Identities=19%  Similarity=0.129  Sum_probs=55.0

Q ss_pred             HHhhhhhccccchhhhccccccCCCCCcccccCCCCChhHHHHHHc------CCceeeEEEeeCCHHHHHHHHHHhhhcC
Q 008149          418 ESLRHCFQTDTLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRL------GIKLKGVISIETSETNRRILKRWWESSG  491 (576)
Q Consensus       418 k~Lg~sf~vdtv~~~lsvLK~~f~~~l~VLsLFSGiGG~slGL~~a------Gi~~k~vvavEid~~a~~t~k~~~~~tn  491 (576)
                      |.+|..|+...+..++.-+-... .+-+|+|.+||.|||-+++.+.      -+.-..++++|+++.+..+-+.+..-++
T Consensus        23 k~~G~~~TP~~i~~l~~~~~~~~-~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~  101 (311)
T PF02384_consen   23 KKLGQFYTPREIVDLMVKLLNPK-KGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHG  101 (311)
T ss_dssp             TSCGGC---HHHHHHHHHHHTT--TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTT
T ss_pred             cccceeehHHHHHHHHHhhhhcc-ccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhc
Confidence            44566676666666654444332 3567999999999998887651      0112457899999999876654322111


Q ss_pred             CCCC--ccccccccccChhhHHHhhhccCCccEEEecCCCCCc
Q 008149          492 QTGE--LVQIEDIQALTTKKFESLIHKLGSIDFVICQNSVPQI  532 (576)
Q Consensus       492 ~~g~--l~~~~DI~~lt~~~Ie~l~~~~g~~DLVIGGpPCQ~F  532 (576)
                      -...  .+..+|.-.  ....    .....+|+|+|-||=-..
T Consensus       102 ~~~~~~~i~~~d~l~--~~~~----~~~~~~D~ii~NPPf~~~  138 (311)
T PF02384_consen  102 IDNSNINIIQGDSLE--NDKF----IKNQKFDVIIGNPPFGSK  138 (311)
T ss_dssp             HHCBGCEEEES-TTT--SHSC----TST--EEEEEEE--CTCE
T ss_pred             ccccccccccccccc--cccc----ccccccccccCCCCcccc
Confidence            0011  122333211  1000    013579999999996665

1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.

>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional

Probab=93.31  E-value=0.16  Score=56.04  Aligned_cols=79  Identities=11%  Similarity=0.017  Sum_probs=52.9

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 008149          442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  521 (576)
Q Consensus       442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~D  521 (576)
                      .+.+||||.||.|.+.+.+.+..-. ..|.++|+|+.+.+..+.+....+ ....+..+|+.+..   +    ...+.||
T Consensus       251 ~~~rVLDLGcGSG~IaiaLA~~~p~-a~VtAVDiS~~ALe~AreNa~~~g-~rV~fi~gDl~e~~---l----~~~~~FD  321 (423)
T PRK14966        251 ENGRVWDLGTGSGAVAVTVALERPD-AFVRASDISPPALETARKNAADLG-ARVEFAHGSWFDTD---M----PSEGKWD  321 (423)
T ss_pred             CCCEEEEEeChhhHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHHHHcC-CcEEEEEcchhccc---c----ccCCCcc
Confidence            3458999999999999887654211 247899999999998888765432 11224456664321   0    0124699


Q ss_pred             EEEecCCC
Q 008149          522 FVICQNSV  529 (576)
Q Consensus       522 LVIGGpPC  529 (576)
                      +|+.-||=
T Consensus       322 LIVSNPPY  329 (423)
T PRK14966        322 IIVSNPPY  329 (423)
T ss_pred             EEEECCCC
Confidence            99988873

>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=93.03  E-value=0.17  Score=50.92  Aligned_cols=79  Identities=20%  Similarity=0.214  Sum_probs=54.6

Q ss_pred             CCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCC-CccccccccccChhhHHHhhhccCC
Q 008149          441 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGS  519 (576)
Q Consensus       441 ~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g-~l~~~~DI~~lt~~~Ie~l~~~~g~  519 (576)
                      +.+.+|||+=||.|.++..|.+.|.+   |+++|+++...+..+......+... ..++.+|+.++..     .  ..+.
T Consensus        43 ~~~~~vLDiGcG~G~~a~~la~~g~~---v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~-----~--~~~~  112 (255)
T PRK11036         43 PRPLRVLDAGGGEGQTAIKLAELGHQ---VILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQ-----H--LETP  112 (255)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHcCCE---EEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhh-----h--cCCC
Confidence            45679999999999999999999864   6789999998887776544322111 1244567665532     1  1257


Q ss_pred             ccEEEecCCC
Q 008149          520 IDFVICQNSV  529 (576)
Q Consensus       520 ~DLVIGGpPC  529 (576)
                      ||+|+.....
T Consensus       113 fD~V~~~~vl  122 (255)
T PRK11036        113 VDLILFHAVL  122 (255)
T ss_pred             CCEEEehhHH
Confidence            9999965443

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=92.98  E-value=0.17  Score=51.19  Aligned_cols=52  Identities=23%  Similarity=0.296  Sum_probs=41.6

Q ss_pred             cccccCCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhh
Q 008149          435 VLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWE  488 (576)
Q Consensus       435 vLK~~f~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~  488 (576)
                      .|..+...+-+|||+-||.|.+.+.+.+.|..  .|+++|+|+.+.+..+.+..
T Consensus       112 ~l~~~~~~~~~VLDiGcGsG~l~i~~~~~g~~--~v~giDis~~~l~~A~~n~~  163 (250)
T PRK00517        112 ALEKLVLPGKTVLDVGCGSGILAIAAAKLGAK--KVLAVDIDPQAVEAARENAE  163 (250)
T ss_pred             HHHhhcCCCCEEEEeCCcHHHHHHHHHHcCCC--eEEEEECCHHHHHHHHHHHH
Confidence            33333446789999999999999999999874  38899999999887777654

>PRK07402 precorrin-6B methylase; Provisional

Probab=92.94  E-value=0.35  Score=46.70  Aligned_cols=47  Identities=23%  Similarity=0.244  Sum_probs=37.0

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhh
Q 008149          442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWES  489 (576)
Q Consensus       442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~  489 (576)
                      .+-+|||++||.|.+...+.+++-. ..|+++|+++...+..+.+...
T Consensus        40 ~~~~VLDiG~G~G~~~~~la~~~~~-~~V~~vD~s~~~~~~a~~n~~~   86 (196)
T PRK07402         40 PDSVLWDIGAGTGTIPVEAGLLCPK-GRVIAIERDEEVVNLIRRNCDR   86 (196)
T ss_pred             CCCEEEEeCCCCCHHHHHHHHHCCC-CEEEEEeCCHHHHHHHHHHHHH
Confidence            3568999999999999888765322 3488999999998888877643

>PTZ00338 dimethyladenosine transferase-like protein; Provisional

Probab=92.88  E-value=0.18  Score=52.79  Aligned_cols=98  Identities=17%  Similarity=0.100  Sum_probs=65.1

Q ss_pred             HHhhhhhc--cccchhhhccccccCCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcC-CCC
Q 008149          418 ESLRHCFQ--TDTLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSG-QTG  494 (576)
Q Consensus       418 k~Lg~sf~--vdtv~~~lsvLK~~f~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn-~~g  494 (576)
                      |.||-.|=  ...+..++..+.  ...+-+|||+-||.|.++..|...+-   -|+++|+|+.....++......+ ...
T Consensus        12 k~~GQnFL~d~~i~~~Iv~~~~--~~~~~~VLEIG~G~G~LT~~Ll~~~~---~V~avEiD~~li~~l~~~~~~~~~~~~   86 (294)
T PTZ00338         12 KKFGQHILKNPLVLDKIVEKAA--IKPTDTVLEIGPGTGNLTEKLLQLAK---KVIAIEIDPRMVAELKKRFQNSPLASK   86 (294)
T ss_pred             CCCCccccCCHHHHHHHHHhcC--CCCcCEEEEecCchHHHHHHHHHhCC---cEEEEECCHHHHHHHHHHHHhcCCCCc
Confidence            45576662  234444444332  22456899999999999998887764   37899999999998887654332 122


Q ss_pred             CccccccccccChhhHHHhhhccCCccEEEecCCCC
Q 008149          495 ELVQIEDIQALTTKKFESLIHKLGSIDFVICQNSVP  530 (576)
Q Consensus       495 ~l~~~~DI~~lt~~~Ie~l~~~~g~~DLVIGGpPCQ  530 (576)
                      ..++.+|+.++..          ..+|+|++-.|=+
T Consensus        87 v~ii~~Dal~~~~----------~~~d~VvaNlPY~  112 (294)
T PTZ00338         87 LEVIEGDALKTEF----------PYFDVCVANVPYQ  112 (294)
T ss_pred             EEEEECCHhhhcc----------cccCEEEecCCcc
Confidence            2356678765431          3579999877754

>PLN02396 hexaprenyldihydroxybenzoate methyltransferase

Probab=92.82  E-value=0.28  Score=52.20  Aligned_cols=75  Identities=17%  Similarity=0.204  Sum_probs=49.5

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCC-CCCccccccccccChhhHHHhhhccCCc
Q 008149          442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQ-TGELVQIEDIQALTTKKFESLIHKLGSI  520 (576)
Q Consensus       442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~-~g~l~~~~DI~~lt~~~Ie~l~~~~g~~  520 (576)
                      .+.+|||+-||.|.+...|.+.|..   |+++|+++...+..+.+...... ....++.+|+.++..        ..+.|
T Consensus       131 ~g~~ILDIGCG~G~~s~~La~~g~~---V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~--------~~~~F  199 (322)
T PLN02396        131 EGLKFIDIGCGGGLLSEPLARMGAT---VTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLAD--------EGRKF  199 (322)
T ss_pred             CCCEEEEeeCCCCHHHHHHHHcCCE---EEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhh--------ccCCC
Confidence            4679999999999999999998864   78999999988877765322110 011233455443321        12468


Q ss_pred             cEEEecC
Q 008149          521 DFVICQN  527 (576)
Q Consensus       521 DLVIGGp  527 (576)
                      |+|+...
T Consensus       200 D~Vi~~~  206 (322)
T PLN02396        200 DAVLSLE  206 (322)
T ss_pred             CEEEEhh
Confidence            8887543

>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated

Probab=92.81  E-value=0.33  Score=46.45  Aligned_cols=47  Identities=17%  Similarity=0.155  Sum_probs=37.4

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhh
Q 008149          442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWES  489 (576)
Q Consensus       442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~  489 (576)
                      .+-+|||+.||.|.+.+.+.+.+-. ..|.++|+++.+....+.+...
T Consensus        31 ~~~~vLDiG~G~G~~~~~la~~~~~-~~v~~vD~s~~~~~~a~~n~~~   77 (187)
T PRK08287         31 RAKHLIDVGAGTGSVSIEAALQFPS-LQVTAIERNPDALRLIKENRQR   77 (187)
T ss_pred             CCCEEEEECCcCCHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHH
Confidence            4678999999999999988776532 2478999999988888776543

>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed

Probab=92.73  E-value=0.3  Score=47.66  Aligned_cols=80  Identities=23%  Similarity=0.204  Sum_probs=54.8

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 008149          442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  521 (576)
Q Consensus       442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~D  521 (576)
                      .+.+|||+-||.|.++.-+.+++-   .++++|+++......+.++...+.....+..+|..+.    +    ...+.||
T Consensus        78 ~~~~VLeiG~GsG~~t~~la~~~~---~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~----~----~~~~~fD  146 (212)
T PRK00312         78 PGDRVLEIGTGSGYQAAVLAHLVR---RVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKG----W----PAYAPFD  146 (212)
T ss_pred             CCCEEEEECCCccHHHHHHHHHhC---EEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccC----C----CcCCCcC
Confidence            468999999999999887777753   3789999999888888777654322222344554321    1    1125799


Q ss_pred             EEEecCCCCCc
Q 008149          522 FVICQNSVPQI  532 (576)
Q Consensus       522 LVIGGpPCQ~F  532 (576)
                      +|+-..+|..+
T Consensus       147 ~I~~~~~~~~~  157 (212)
T PRK00312        147 RILVTAAAPEI  157 (212)
T ss_pred             EEEEccCchhh
Confidence            99988777654

>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated

Probab=92.63  E-value=0.31  Score=47.52  Aligned_cols=45  Identities=24%  Similarity=0.330  Sum_probs=37.7

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhh
Q 008149          442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWES  489 (576)
Q Consensus       442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~  489 (576)
                      .+.+|||+-||.|.+...|.+.|..   +.++|+++......+..+..
T Consensus        63 ~~~~vLDvGcG~G~~~~~l~~~~~~---v~~~D~s~~~i~~a~~~~~~  107 (230)
T PRK07580         63 TGLRILDAGCGVGSLSIPLARRGAK---VVASDISPQMVEEARERAPE  107 (230)
T ss_pred             CCCEEEEEeCCCCHHHHHHHHcCCE---EEEEECCHHHHHHHHHHHHh
Confidence            4678999999999999999888853   78999999988877776543

>KOG2904 consensus Predicted methyltransferase [General function prediction only]

Probab=92.63  E-value=0.19  Score=52.87  Aligned_cols=83  Identities=19%  Similarity=0.255  Sum_probs=54.7

Q ss_pred             CcccccCCCCChhHHHH-HHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCccE
Q 008149          444 LTMLSVFSGIGGAEVTL-HRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDF  522 (576)
Q Consensus       444 l~VLsLFSGiGG~slGL-~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~DL  522 (576)
                      ..++|++||.|.+++++ |.++ + -.|.|+|.++.|.+.-..|-....-.|..-.+.-|.  +.+.........|..|+
T Consensus       150 ~~ildlgtGSGaIslsll~~L~-~-~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~m--e~d~~~~~~l~~~~~dl  225 (328)
T KOG2904|consen  150 THILDLGTGSGAISLSLLHGLP-Q-CTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIM--ESDASDEHPLLEGKIDL  225 (328)
T ss_pred             ceEEEecCCccHHHHHHHhcCC-C-ceEEEEeccHHHHHHHHHHHHHHhhcCceEEEeccc--ccccccccccccCceeE
Confidence            36999999999999996 5666 4 468899999999988777655433233332221121  22222222234589999


Q ss_pred             EEecCCCC
Q 008149          523 VICQNSVP  530 (576)
Q Consensus       523 VIGGpPCQ  530 (576)
                      +++-||--
T Consensus       226 lvsNPPYI  233 (328)
T KOG2904|consen  226 LVSNPPYI  233 (328)
T ss_pred             EecCCCcc
Confidence            99999853

>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]

Probab=92.25  E-value=0.28  Score=51.94  Aligned_cols=55  Identities=22%  Similarity=0.296  Sum_probs=46.4

Q ss_pred             hccccccCCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhh
Q 008149          433 LSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWES  489 (576)
Q Consensus       433 lsvLK~~f~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~  489 (576)
                      |.-|..+-..+.+|||+=||.|=+++|..++|-  +-|+++|||+.|.++-+.|-..
T Consensus       153 L~~Le~~~~~g~~vlDvGcGSGILaIAa~kLGA--~~v~g~DiDp~AV~aa~eNa~~  207 (300)
T COG2264         153 LEALEKLLKKGKTVLDVGCGSGILAIAAAKLGA--KKVVGVDIDPQAVEAARENARL  207 (300)
T ss_pred             HHHHHHhhcCCCEEEEecCChhHHHHHHHHcCC--ceEEEecCCHHHHHHHHHHHHH
Confidence            555566666889999999999999999999998  4589999999999988876543

>PF07499 RuvA_C: RuvA, C-terminal domain; InterPro: IPR011114 In prokaryotes, RuvA, RuvB, and RuvC process the universal DNA intermediate of homologous recombination, termed Holliday junction

Probab=92.21  E-value=0.26  Score=38.08  Aligned_cols=35  Identities=20%  Similarity=0.401  Sum_probs=28.6

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHh--CCCCChhhhhHh
Q 008149           90 EITLQLLEMGFSENQVSLAIEKF--GSKTPISELADK  124 (576)
Q Consensus        90 ~k~~~L~~MGFseeEas~AI~r~--G~da~i~eLvD~  124 (576)
                      |-+..|+.+||++.||..|+.+.  +++.++++++--
T Consensus         5 d~~~AL~~LGy~~~e~~~av~~~~~~~~~~~e~~ik~   41 (47)
T PF07499_consen    5 DALEALISLGYSKAEAQKAVSKLLEKPGMDVEELIKQ   41 (47)
T ss_dssp             HHHHHHHHTTS-HHHHHHHHHHHHHSTTS-HHHHHHH
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHHHHHH
Confidence            45678999999999999999999  899998887643

The tetrameric DNA helicase RuvA specifically binds to the Holliday junction and facilitates the isomerization of the junction from the stacked folded configuration to the square-planar structure []. In the RuvA tetramer, each subunit consists of three domains, I, II and III, where I and II form the major core that is responsible for Holliday junction binding and base pair rearrangements of Holliday junction executed at the crossover point, whereas domain III regulates branch migration through direct contact with RuvB. The domain represents the C-terminal domain III of RuvA. This domain plays a significant role in the ATP-dependent branch migration of the hetero-duplex through direct contact with RuvB []. Within the Holliday junction, this domain makes no interaction with the DNA.; GO: 0005524 ATP binding, 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination, 0009379 Holliday junction helicase complex; PDB: 1HJP_A 1CUK_A 1C7Y_A 1IXS_A 1IXR_B 1BVS_E 2ZTC_A 2ZTD_B 2H5X_A.

>PLN02244 tocopherol O-methyltransferase

Probab=92.14  E-value=0.48  Score=50.26  Aligned_cols=74  Identities=23%  Similarity=0.220  Sum_probs=49.2

Q ss_pred             CCCcccccCCCCChhHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHhhhcCCC-CCccccccccccChhhHHHhhhccCC
Q 008149          442 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQT-GELVQIEDIQALTTKKFESLIHKLGS  519 (576)
Q Consensus       442 ~~l~VLsLFSGiGG~slGL~~a-Gi~~k~vvavEid~~a~~t~k~~~~~tn~~-g~l~~~~DI~~lt~~~Ie~l~~~~g~  519 (576)
                      .+-+|||+-||.|++...|.+. |.   .|.++|+++...+..+......+.. ...++.+|+.++.-        .-+.
T Consensus       118 ~~~~VLDiGCG~G~~~~~La~~~g~---~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~--------~~~~  186 (340)
T PLN02244        118 RPKRIVDVGCGIGGSSRYLARKYGA---NVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPF--------EDGQ  186 (340)
T ss_pred             CCCeEEEecCCCCHHHHHHHHhcCC---EEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCC--------CCCC
Confidence            4678999999999999888764 55   3688999998776665543322211 12245567766531        1257


Q ss_pred             ccEEEec
Q 008149          520 IDFVICQ  526 (576)
Q Consensus       520 ~DLVIGG  526 (576)
                      ||+|+..
T Consensus       187 FD~V~s~  193 (340)
T PLN02244        187 FDLVWSM  193 (340)
T ss_pred             ccEEEEC
Confidence            9999863

>KOG2730 consensus Methylase [General function prediction only]

Probab=91.89  E-value=0.21  Score=51.13  Aligned_cols=104  Identities=15%  Similarity=0.150  Sum_probs=62.8

Q ss_pred             ccccchhhhccccccCCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCC-cccccccc
Q 008149          425 QTDTLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGE-LVQIEDIQ  503 (576)
Q Consensus       425 ~vdtv~~~lsvLK~~f~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~-l~~~~DI~  503 (576)
                      ++.-++-|+.--+.-.-+.-.++|-|||+||-..=|-.-|-.   |+++|||+.....-+++-+-.+-+.. -++++|+-
T Consensus        77 Tpe~ia~~iA~~v~~~~~~~~iidaf~g~gGntiqfa~~~~~---VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~l  153 (263)
T KOG2730|consen   77 TPEKIAEHIANRVVACMNAEVIVDAFCGVGGNTIQFALQGPY---VIAIDIDPVKIACARHNAEVYGVPDRITFICGDFL  153 (263)
T ss_pred             ccHHHHHHHHHHHHHhcCcchhhhhhhcCCchHHHHHHhCCe---EEEEeccHHHHHHHhccceeecCCceeEEEechHH
Confidence            444455554433333335677999999999999999888863   78999999976655543322211111 14566665


Q ss_pred             ccChhhHHHhhhccCCccEEEecCCCCCcccc
Q 008149          504 ALTTKKFESLIHKLGSIDFVICQNSVPQIPNS  535 (576)
Q Consensus       504 ~lt~~~Ie~l~~~~g~~DLVIGGpPCQ~FS~a  535 (576)
                      ++-. .+ ++.+  .-+|+|.+.||=-+-|..
T Consensus       154 d~~~-~l-q~~K--~~~~~vf~sppwggp~y~  181 (263)
T KOG2730|consen  154 DLAS-KL-KADK--IKYDCVFLSPPWGGPSYL  181 (263)
T ss_pred             HHHH-HH-hhhh--heeeeeecCCCCCCcchh
Confidence            4321 11 1111  237899988887776654

>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

Probab=91.81  E-value=0.4  Score=46.60  Aligned_cols=78  Identities=15%  Similarity=0.179  Sum_probs=47.7

Q ss_pred             CCCcccccCCCCChhHHHHHH-cCCceeeEEEeeCCHHHHHHHHHHhhhcC-CCCCccccccccccChhhHHHhhhccCC
Q 008149          442 GGLTMLSVFSGIGGAEVTLHR-LGIKLKGVISIETSETNRRILKRWWESSG-QTGELVQIEDIQALTTKKFESLIHKLGS  519 (576)
Q Consensus       442 ~~l~VLsLFSGiGG~slGL~~-aGi~~k~vvavEid~~a~~t~k~~~~~tn-~~g~l~~~~DI~~lt~~~Ie~l~~~~g~  519 (576)
                      .+-+|||+.||.|.+++.+.+ +|-. ..|+++|+++...+..+.+-...+ .....+..+|..++    +..   ..+.
T Consensus        40 ~~~~vlDlG~GtG~~s~~~a~~~~~~-~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~----l~~---~~~~  111 (198)
T PRK00377         40 KGDMILDIGCGTGSVTVEASLLVGET-GKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEI----LFT---INEK  111 (198)
T ss_pred             CcCEEEEeCCcCCHHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhh----Hhh---cCCC
Confidence            457899999999999987754 3422 248899999998877766543322 01111223444321    111   1257


Q ss_pred             ccEEEecC
Q 008149          520 IDFVICQN  527 (576)
Q Consensus       520 ~DLVIGGp  527 (576)
                      +|+|+-|.
T Consensus       112 ~D~V~~~~  119 (198)
T PRK00377        112 FDRIFIGG  119 (198)
T ss_pred             CCEEEECC
Confidence            99998754

>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional

Probab=91.77  E-value=0.33  Score=52.77  Aligned_cols=75  Identities=13%  Similarity=0.106  Sum_probs=51.0

Q ss_pred             CcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCC----ccccccccccChhhHHHhhhccCC
Q 008149          444 LTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGE----LVQIEDIQALTTKKFESLIHKLGS  519 (576)
Q Consensus       444 l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~----l~~~~DI~~lt~~~Ie~l~~~~g~  519 (576)
                      -+||||.||.|-+.+.+.+.+=. .-|.++|+++.+...-+.++..+ ....    .+...|+.+       .+  ..+.
T Consensus       230 ~~VLDLGCGtGvi~i~la~~~P~-~~V~~vD~S~~Av~~A~~N~~~n-~~~~~~~v~~~~~D~l~-------~~--~~~~  298 (378)
T PRK15001        230 GEIVDLGCGNGVIGLTLLDKNPQ-AKVVFVDESPMAVASSRLNVETN-MPEALDRCEFMINNALS-------GV--EPFR  298 (378)
T ss_pred             CeEEEEeccccHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHHHHc-CcccCceEEEEEccccc-------cC--CCCC
Confidence            38999999999999988877522 24789999999999888887543 2211    122333321       11  1136


Q ss_pred             ccEEEecCCC
Q 008149          520 IDFVICQNSV  529 (576)
Q Consensus       520 ~DLVIGGpPC  529 (576)
                      ||+|+..||.
T Consensus       299 fDlIlsNPPf  308 (378)
T PRK15001        299 FNAVLCNPPF  308 (378)
T ss_pred             EEEEEECcCc
Confidence            9999998885

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=91.61  E-value=0.4  Score=53.86  Aligned_cols=81  Identities=15%  Similarity=0.066  Sum_probs=52.2

Q ss_pred             CCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCC-CccccccccccChhhHHHhhhccCCcc
Q 008149          443 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGSID  521 (576)
Q Consensus       443 ~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g-~l~~~~DI~~lt~~~Ie~l~~~~g~~D  521 (576)
                      +.+|||+.||.|.+.+++...- +-..|+++|+|+.+.+..+.+....+... ..+..+|+.+       .+  ..+.||
T Consensus       139 ~~~VLDlG~GsG~iai~la~~~-p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~-------~~--~~~~fD  208 (506)
T PRK01544        139 FLNILELGTGSGCIAISLLCEL-PNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFE-------NI--EKQKFD  208 (506)
T ss_pred             CCEEEEccCchhHHHHHHHHHC-CCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhh-------hC--cCCCcc
Confidence            4689999999999998776431 11247899999999998887754332111 1123444421       11  114699


Q ss_pred             EEEecCCCCCcc
Q 008149          522 FVICQNSVPQIP  533 (576)
Q Consensus       522 LVIGGpPCQ~FS  533 (576)
                      +|+..||=-+.+
T Consensus       209 lIvsNPPYi~~~  220 (506)
T PRK01544        209 FIVSNPPYISHS  220 (506)
T ss_pred             EEEECCCCCCch
Confidence            999999855443

>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

Probab=91.48  E-value=0.41  Score=49.33  Aligned_cols=72  Identities=33%  Similarity=0.356  Sum_probs=52.3

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 008149          442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  521 (576)
Q Consensus       442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~D  521 (576)
                      .+++|||.=||.|=++.-+.++|.   .|.++|+++.+..+-+.++..+.   ..   .|=...+.+   ++...-+.||
T Consensus        59 ~g~~vLDvGCGgG~Lse~mAr~Ga---~VtgiD~se~~I~~Ak~ha~e~g---v~---i~y~~~~~e---dl~~~~~~FD  126 (243)
T COG2227          59 PGLRVLDVGCGGGILSEPLARLGA---SVTGIDASEKPIEVAKLHALESG---VN---IDYRQATVE---DLASAGGQFD  126 (243)
T ss_pred             CCCeEEEecCCccHhhHHHHHCCC---eeEEecCChHHHHHHHHhhhhcc---cc---ccchhhhHH---HHHhcCCCcc
Confidence            479999999999999999999996   47899999999999988776442   11   122223333   3333337899


Q ss_pred             EEEe
Q 008149          522 FVIC  525 (576)
Q Consensus       522 LVIG  525 (576)
                      +|+.
T Consensus       127 vV~c  130 (243)
T COG2227         127 VVTC  130 (243)
T ss_pred             EEEE
Confidence            9983

>PLN02585 magnesium protoporphyrin IX methyltransferase

Probab=91.45  E-value=0.41  Score=50.74  Aligned_cols=43  Identities=21%  Similarity=0.170  Sum_probs=36.2

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHh
Q 008149          442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWW  487 (576)
Q Consensus       442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~  487 (576)
                      .+.+|||+-||.|.+.+.|.+.|.+   |.++|+++...+..+...
T Consensus       144 ~~~~VLDlGcGtG~~a~~la~~g~~---V~gvD~S~~ml~~A~~~~  186 (315)
T PLN02585        144 AGVTVCDAGCGTGSLAIPLALEGAI---VSASDISAAMVAEAERRA  186 (315)
T ss_pred             CCCEEEEecCCCCHHHHHHHHCCCE---EEEEECCHHHHHHHHHHH
Confidence            4679999999999999999999863   789999999877666543

>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed

Probab=91.35  E-value=0.48  Score=46.49  Aligned_cols=79  Identities=19%  Similarity=0.183  Sum_probs=53.5

Q ss_pred             ccCCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhcc
Q 008149          438 SMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKL  517 (576)
Q Consensus       438 ~~f~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~  517 (576)
                      ++++.+.+|||+=||.|.+++.+.++.-. ..|+++|+++......+.+....+.....++.+|+.++..         .
T Consensus        41 ~~l~~g~~VLDiGcGtG~~al~la~~~~~-~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~---------~  110 (187)
T PRK00107         41 PYLPGGERVLDVGSGAGFPGIPLAIARPE-LKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQ---------E  110 (187)
T ss_pred             hhcCCCCeEEEEcCCCCHHHHHHHHHCCC-CeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCC---------C
Confidence            33445789999999999988877653212 3488999999888777776655433223345566665432         2


Q ss_pred             CCccEEEec
Q 008149          518 GSIDFVICQ  526 (576)
Q Consensus       518 g~~DLVIGG  526 (576)
                      +.+|+|+..
T Consensus       111 ~~fDlV~~~  119 (187)
T PRK00107        111 EKFDVVTSR  119 (187)
T ss_pred             CCccEEEEc
Confidence            479999963

>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences

Probab=91.09  E-value=0.35  Score=50.96  Aligned_cols=56  Identities=23%  Similarity=0.278  Sum_probs=44.4

Q ss_pred             hccccccCCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhc
Q 008149          433 LSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESS  490 (576)
Q Consensus       433 lsvLK~~f~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~t  490 (576)
                      |..|..+...+-+|||+=||.|=++++..++|..  -|+++|||+.|.++-+.|-..+
T Consensus       152 l~~l~~~~~~g~~vLDvG~GSGILaiaA~klGA~--~v~a~DiDp~Av~~a~~N~~~N  207 (295)
T PF06325_consen  152 LELLEKYVKPGKRVLDVGCGSGILAIAAAKLGAK--KVVAIDIDPLAVEAARENAELN  207 (295)
T ss_dssp             HHHHHHHSSTTSEEEEES-TTSHHHHHHHHTTBS--EEEEEESSCHHHHHHHHHHHHT
T ss_pred             HHHHHHhccCCCEEEEeCCcHHHHHHHHHHcCCC--eEEEecCCHHHHHHHHHHHHHc
Confidence            3444444455679999999999999999999984  4899999999999888776443

Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....

>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]

Probab=90.95  E-value=0.98  Score=49.36  Aligned_cols=109  Identities=18%  Similarity=0.188  Sum_probs=71.8

Q ss_pred             ccccCCCCCcccccCCCCChhHHHHHHcCC--------------------------------------ceeeEEEeeCCH
Q 008149          436 LKSMFPGGLTMLSVFSGIGGAEVTLHRLGI--------------------------------------KLKGVISIETSE  477 (576)
Q Consensus       436 LK~~f~~~l~VLsLFSGiGG~slGL~~aGi--------------------------------------~~k~vvavEid~  477 (576)
                      |-.+.+. -.++|-|||.|.+-+=.-..|-                                      ++..++++|||+
T Consensus       186 lagw~~~-~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~  264 (381)
T COG0116         186 LAGWKPD-EPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDP  264 (381)
T ss_pred             HcCCCCC-CccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCH
Confidence            3344443 5799999999987543333331                                      122477999999


Q ss_pred             HHHHHHHHHhhhcCCCCCc-cccccccccChhhHHHhhhccCCccEEEecCCCCCccccCCCCCCCCccccccCCCCCCC
Q 008149          478 TNRRILKRWWESSGQTGEL-VQIEDIQALTTKKFESLIHKLGSIDFVICQNSVPQIPNSKQISNSKDPKMAAESDNLPDF  556 (576)
Q Consensus       478 ~a~~t~k~~~~~tn~~g~l-~~~~DI~~lt~~~Ie~l~~~~g~~DLVIGGpPCQ~FS~agr~~~~~~~~~aG~R~Gl~D~  556 (576)
                      ...+.-+.|.......+.+ +...|++.+...        +..+|+||+-||=                  |.|.|-...
T Consensus       265 r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~--------~~~~gvvI~NPPY------------------GeRlg~~~~  318 (381)
T COG0116         265 RHIEGAKANARAAGVGDLIEFKQADATDLKEP--------LEEYGVVISNPPY------------------GERLGSEAL  318 (381)
T ss_pred             HHHHHHHHHHHhcCCCceEEEEEcchhhCCCC--------CCcCCEEEeCCCc------------------chhcCChhh
Confidence            9999999998877543333 345777777653        2478999988882                  334443323


Q ss_pred             CcchHHHHHHHHHHh
Q 008149          557 DFSLYYEFVRVVQRV  571 (576)
Q Consensus       557 Rs~Lf~EyvRIV~~v  571 (576)
                      -..||-+|.+.+++.
T Consensus       319 v~~LY~~fg~~lk~~  333 (381)
T COG0116         319 VAKLYREFGRTLKRL  333 (381)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            355999999888554

>KOG1227 consensus Putative methyltransferase [General function prediction only]

Probab=90.38  E-value=0.25  Score=52.47  Aligned_cols=54  Identities=26%  Similarity=0.273  Sum_probs=43.4

Q ss_pred             hccccccCCCCCcccccCCCCChhHH-HHHHcCCceeeEEEeeCCHHHHHHHHHHhhh
Q 008149          433 LSVLKSMFPGGLTMLSVFSGIGGAEV-TLHRLGIKLKGVISIETSETNRRILKRWWES  489 (576)
Q Consensus       433 lsvLK~~f~~~l~VLsLFSGiGG~sl-GL~~aGi~~k~vvavEid~~a~~t~k~~~~~  489 (576)
                      ++|+ +++..+-.|+|||||||=|.+ -+-.+|.  +.|+|+|+||.+...+++.-+.
T Consensus       186 ~Rv~-~~sc~~eviVDLYAGIGYFTlpflV~agA--k~V~A~EwNp~svEaLrR~~~~  240 (351)
T KOG1227|consen  186 KRVL-NTSCDGEVIVDLYAGIGYFTLPFLVTAGA--KTVFACEWNPWSVEALRRNAEA  240 (351)
T ss_pred             HHhh-hcccccchhhhhhcccceEEeehhhccCc--cEEEEEecCHHHHHHHHHHHHh
Confidence            3444 344556779999999999999 6779998  5699999999999999986543

>TIGR00478 tly hemolysin TlyA family protein

Probab=90.23  E-value=0.53  Score=47.81  Aligned_cols=75  Identities=16%  Similarity=0.196  Sum_probs=49.2

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHH-HHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 008149          442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRR-ILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI  520 (576)
Q Consensus       442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~-t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~  520 (576)
                      .+.+|||+-||.||++..+.+.|.  +.|++||+++.-.. .++.     +..-..+...||+.++.+++.   ..+..+
T Consensus        75 ~~~~vlDiG~gtG~~t~~l~~~ga--~~v~avD~~~~~l~~~l~~-----~~~v~~~~~~ni~~~~~~~~~---~d~~~~  144 (228)
T TIGR00478        75 KNKIVLDVGSSTGGFTDCALQKGA--KEVYGVDVGYNQLAEKLRQ-----DERVKVLERTNIRYVTPADIF---PDFATF  144 (228)
T ss_pred             CCCEEEEcccCCCHHHHHHHHcCC--CEEEEEeCCHHHHHHHHhc-----CCCeeEeecCCcccCCHhHcC---CCceee
Confidence            567899999999999999999986  55899999985322 2221     111112345677777665552   123467


Q ss_pred             cEEEec
Q 008149          521 DFVICQ  526 (576)
Q Consensus       521 DLVIGG  526 (576)
                      |+++-+
T Consensus       145 DvsfiS  150 (228)
T TIGR00478       145 DVSFIS  150 (228)
T ss_pred             eEEEee
Confidence            776644

Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).

>TIGR00477 tehB tellurite resistance protein TehB

Probab=90.12  E-value=0.9  Score=44.23  Aligned_cols=77  Identities=14%  Similarity=0.090  Sum_probs=51.0

Q ss_pred             CCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCccE
Q 008149          443 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDF  522 (576)
Q Consensus       443 ~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~DL  522 (576)
                      +.+|||+=||.|-.++-|.+.|.+   |.++|+++.+.+..+......+.. ......|+....   +      .+.+|+
T Consensus        31 ~~~vLDiGcG~G~~a~~la~~g~~---V~~iD~s~~~l~~a~~~~~~~~~~-v~~~~~d~~~~~---~------~~~fD~   97 (195)
T TIGR00477        31 PCKTLDLGCGQGRNSLYLSLAGYD---VRAWDHNPASIASVLDMKARENLP-LRTDAYDINAAA---L------NEDYDF   97 (195)
T ss_pred             CCcEEEeCCCCCHHHHHHHHCCCe---EEEEECCHHHHHHHHHHHHHhCCC-ceeEeccchhcc---c------cCCCCE
Confidence            468999999999999999888874   789999999888776654332211 112233443221   1      136899


Q ss_pred             EEecCCCCCc
Q 008149          523 VICQNSVPQI  532 (576)
Q Consensus       523 VIGGpPCQ~F  532 (576)
                      |+...+.-.+
T Consensus        98 I~~~~~~~~~  107 (195)
T TIGR00477        98 IFSTVVFMFL  107 (195)
T ss_pred             EEEecccccC
Confidence            9877655433

Part of a tellurite-reducing operon tehA and tehB

>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed

Probab=90.06  E-value=0.57  Score=45.93  Aligned_cols=82  Identities=21%  Similarity=0.152  Sum_probs=53.8

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccc-cccChhhHHHhhhccCCc
Q 008149          442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDI-QALTTKKFESLIHKLGSI  520 (576)
Q Consensus       442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI-~~lt~~~Ie~l~~~~g~~  520 (576)
                      .+.+|||+-||.|.+...+.+.. +-..++++|+++......+.+..........++.+|+ ..+.     ... ..+.+
T Consensus        40 ~~~~VLDiGcGtG~~~~~la~~~-p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~-----~~~-~~~~~  112 (202)
T PRK00121         40 DAPIHLEIGFGKGEFLVEMAKAN-PDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLL-----DMF-PDGSL  112 (202)
T ss_pred             CCCeEEEEccCCCHHHHHHHHHC-CCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHH-----HHc-Ccccc
Confidence            35789999999999999886653 2235899999999988887766443222223455666 3322     111 12579


Q ss_pred             cEEEecCCCC
Q 008149          521 DFVICQNSVP  530 (576)
Q Consensus       521 DLVIGGpPCQ  530 (576)
                      |+|+--+|.+
T Consensus       113 D~V~~~~~~p  122 (202)
T PRK00121        113 DRIYLNFPDP  122 (202)
T ss_pred             ceEEEECCCC
Confidence            9999766543

>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e

Probab=90.01  E-value=0.38  Score=49.13  Aligned_cols=99  Identities=20%  Similarity=0.171  Sum_probs=66.0

Q ss_pred             Hhhhhh--ccccchhhhccccccCCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCc
Q 008149          419 SLRHCF--QTDTLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGEL  496 (576)
Q Consensus       419 ~Lg~sf--~vdtv~~~lsvLK~~f~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l  496 (576)
                      .+|-.|  +..++..+.+.+...  .+.+||++-+|.|-++..|...|   +-++++|+|+.....++..+.  ......
T Consensus         7 ~~gQnFL~~~~~~~~Iv~~~~~~--~~~~VlEiGpG~G~lT~~L~~~~---~~v~~vE~d~~~~~~L~~~~~--~~~~~~   79 (262)
T PF00398_consen    7 SLGQNFLVDPNIADKIVDALDLS--EGDTVLEIGPGPGALTRELLKRG---KRVIAVEIDPDLAKHLKERFA--SNPNVE   79 (262)
T ss_dssp             GCTSSEEEHHHHHHHHHHHHTCG--TTSEEEEESSTTSCCHHHHHHHS---SEEEEEESSHHHHHHHHHHCT--TCSSEE
T ss_pred             CCCcCeeCCHHHHHHHHHhcCCC--CCCEEEEeCCCCccchhhHhccc---CcceeecCcHhHHHHHHHHhh--hcccce
Confidence            344444  222344444444322  56889999999999999999998   458899999999998887543  122233


Q ss_pred             cccccccccChhhHHHhhhccCCccEEEecCCC
Q 008149          497 VQIEDIQALTTKKFESLIHKLGSIDFVICQNSV  529 (576)
Q Consensus       497 ~~~~DI~~lt~~~Ie~l~~~~g~~DLVIGGpPC  529 (576)
                      ++.+|+-+++.....     .....+|+|--|=
T Consensus        80 vi~~D~l~~~~~~~~-----~~~~~~vv~NlPy  107 (262)
T PF00398_consen   80 VINGDFLKWDLYDLL-----KNQPLLVVGNLPY  107 (262)
T ss_dssp             EEES-TTTSCGGGHC-----SSSEEEEEEEETG
T ss_pred             eeecchhccccHHhh-----cCCceEEEEEecc
Confidence            667999888764421     2356778887773

g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....

>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=89.98  E-value=1.4  Score=49.15  Aligned_cols=86  Identities=16%  Similarity=0.197  Sum_probs=56.3

Q ss_pred             HHhcCCCChHHHHHHHHHhCCCCcHHHHHHHHHHhhhcccccccCCCCCCCCCCCCCCCchhhhhhh-hHHHHHHHhcCC
Q 008149           22 SLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQISENFEKETDDAPHDNDGTNEDKSDETLYGT-MEITLQLLEMGF  100 (576)
Q Consensus        22 ~li~MGFs~e~V~kAIqe~Ge~~~~~~Ile~Ll~~q~l~~~~~e~~ds~~~~~~~ne~~~~e~~~~~-~~k~~~L~~MGF  100 (576)
                      .|++|||..+.+..|++.+ +++ ...-|+.|-.-+.             ...+ |   .++.-.+. -.++..|+.|||
T Consensus       381 rL~~mGyer~la~eaL~r~-~Nd-i~~aldllq~esd-------------el~~-n---~~~~p~~vd~~~la~Lv~mGF  441 (568)
T KOG2561|consen  381 RLVSMGYERELAAEALRRN-END-IQKALDLLQDESD-------------ELES-N---KPKRPEQVDGISLAELVSMGF  441 (568)
T ss_pred             HHHhcchHhHHHHHHHHhc-cCc-HHHHHHhcCCcch-------------hhhc-c---CCCCCcccchhhHHHHHHhcc
Confidence            6889999999999999984 334 6677776652100             0110 0   11111111 136679999999


Q ss_pred             CHHHHHHHHHHhCCCCChhhhhHhHhhc
Q 008149          101 SENQVSLAIEKFGSKTPISELADKIFSG  128 (576)
Q Consensus       101 seeEas~AI~r~G~da~i~eLvD~I~Aa  128 (576)
                      .+--|..|++-.|..  ++....++.++
T Consensus       442 ~e~~A~~ALe~~gnn--~~~a~~~L~~s  467 (568)
T KOG2561|consen  442 EEGKARSALEAGGNN--EDTAQRLLSAS  467 (568)
T ss_pred             ccchHHHHHHhcCCc--HHHHHHHHHHh
Confidence            999999999999986  55555555544

>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family

Probab=89.82  E-value=0.69  Score=46.18  Aligned_cols=40  Identities=23%  Similarity=0.291  Sum_probs=35.4

Q ss_pred             CCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHH
Q 008149          441 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRIL  483 (576)
Q Consensus       441 ~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~  483 (576)
                      +.+-+||++.||.|--.+-|.+.|++   |+++|+++.+++..
T Consensus        33 ~~~~rvLd~GCG~G~da~~LA~~G~~---V~gvD~S~~Ai~~~   72 (213)
T TIGR03840        33 PAGARVFVPLCGKSLDLAWLAEQGHR---VLGVELSEIAVEQF   72 (213)
T ss_pred             CCCCeEEEeCCCchhHHHHHHhCCCe---EEEEeCCHHHHHHH
Confidence            45679999999999999999999995   78999999998754

Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=89.69  E-value=0.83  Score=53.29  Aligned_cols=54  Identities=11%  Similarity=0.143  Sum_probs=37.5

Q ss_pred             eEEEeeCCHHHHHHHHHHhhhcCCCCC-ccccccccccChhhHHHhhhccCCccEEEecCC
Q 008149          469 GVISIETSETNRRILKRWWESSGQTGE-LVQIEDIQALTTKKFESLIHKLGSIDFVICQNS  528 (576)
Q Consensus       469 ~vvavEid~~a~~t~k~~~~~tn~~g~-l~~~~DI~~lt~~~Ie~l~~~~g~~DLVIGGpP  528 (576)
                      .++++|+|+.+...-+.|....+.... .+..+|+.++....      ..+.+|+|+.=||
T Consensus       258 ~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~------~~~~~d~IvtNPP  312 (702)
T PRK11783        258 KFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPL------PKGPTGLVISNPP  312 (702)
T ss_pred             eEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhccccc------ccCCCCEEEECCC
Confidence            378999999999999998876543332 24567777664311      1146899998887

>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=89.59  E-value=0.97  Score=44.71  Aligned_cols=77  Identities=17%  Similarity=0.137  Sum_probs=50.1

Q ss_pred             CCCCcccccCCCCChhHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCC
Q 008149          441 PGGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGS  519 (576)
Q Consensus       441 ~~~l~VLsLFSGiGG~slGL~~a-Gi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~  519 (576)
                      ..+-+|||+-||.|.++.-+.++ |- -..|+++|+++......+.++...+.....+..+|..+...        ..+.
T Consensus        75 ~~g~~VLdIG~GsG~~t~~la~~~~~-~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~--------~~~~  145 (212)
T PRK13942         75 KEGMKVLEIGTGSGYHAAVVAEIVGK-SGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGYE--------ENAP  145 (212)
T ss_pred             CCcCEEEEECCcccHHHHHHHHhcCC-CCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCC--------cCCC
Confidence            34689999999999999777654 32 12488999999988888777654322222244556543221        1257


Q ss_pred             ccEEEec
Q 008149          520 IDFVICQ  526 (576)
Q Consensus       520 ~DLVIGG  526 (576)
                      ||+|+-+
T Consensus       146 fD~I~~~  152 (212)
T PRK13942        146 YDRIYVT  152 (212)
T ss_pred             cCEEEEC
Confidence            8888744

>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=89.30  E-value=1.2  Score=43.68  Aligned_cols=82  Identities=20%  Similarity=0.107  Sum_probs=51.6

Q ss_pred             CCCcccccCCCCChhHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHhhhcCCCC-CccccccccccChhhHHHhhhccCC
Q 008149          442 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGS  519 (576)
Q Consensus       442 ~~l~VLsLFSGiGG~slGL~~a-Gi~~k~vvavEid~~a~~t~k~~~~~tn~~g-~l~~~~DI~~lt~~~Ie~l~~~~g~  519 (576)
                      .+-+|||+.||.|..+.-+.++ +- -..|+++|+++......+.+....+... ..+..+|..+.-.        ..+.
T Consensus        72 ~~~~VLDiG~GsG~~~~~la~~~~~-~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~--------~~~~  142 (205)
T PRK13944         72 PGMKILEVGTGSGYQAAVCAEAIER-RGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLE--------KHAP  142 (205)
T ss_pred             CCCEEEEECcCccHHHHHHHHhcCC-CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCc--------cCCC
Confidence            3578999999999998776653 21 1248999999987776665554332211 1234566654221        1257


Q ss_pred             ccEEEecCCCCCc
Q 008149          520 IDFVICQNSVPQI  532 (576)
Q Consensus       520 ~DLVIGGpPCQ~F  532 (576)
                      ||+|+-+..+..+
T Consensus       143 fD~Ii~~~~~~~~  155 (205)
T PRK13944        143 FDAIIVTAAASTI  155 (205)
T ss_pred             ccEEEEccCcchh
Confidence            9999877665443

>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional

Probab=89.25  E-value=1  Score=44.69  Aligned_cols=74  Identities=14%  Similarity=0.055  Sum_probs=47.5

Q ss_pred             CCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccCh-hhHHHhhhccCC
Q 008149          441 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTT-KKFESLIHKLGS  519 (576)
Q Consensus       441 ~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~-~~Ie~l~~~~g~  519 (576)
                      +.+-+||||=||.|+++..+.+..-.-..|++||+++..           +.++..++.+|+.+... ++|.+.. ..+.
T Consensus        50 ~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~~-----------~~~~v~~i~~D~~~~~~~~~i~~~~-~~~~  117 (209)
T PRK11188         50 KPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPMD-----------PIVGVDFLQGDFRDELVLKALLERV-GDSK  117 (209)
T ss_pred             CCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccccc-----------CCCCcEEEecCCCChHHHHHHHHHh-CCCC
Confidence            346689999999999987665542122358999999831           12344467889887542 2222211 1367


Q ss_pred             ccEEEec
Q 008149          520 IDFVICQ  526 (576)
Q Consensus       520 ~DLVIGG  526 (576)
                      +|+|+..
T Consensus       118 ~D~V~S~  124 (209)
T PRK11188        118 VQVVMSD  124 (209)
T ss_pred             CCEEecC
Confidence            9999974

>TIGR02072 BioC biotin biosynthesis protein BioC

Probab=89.20  E-value=0.54  Score=45.38  Aligned_cols=77  Identities=14%  Similarity=0.074  Sum_probs=53.3

Q ss_pred             CCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCccE
Q 008149          443 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDF  522 (576)
Q Consensus       443 ~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~DL  522 (576)
                      +.+||||-||.|.++..+.+.|... .+.++|+++...+..+....    ....+..+|+.++..        .-+.+|+
T Consensus        35 ~~~vLDlG~G~G~~~~~l~~~~~~~-~~~~~D~~~~~~~~~~~~~~----~~~~~~~~d~~~~~~--------~~~~fD~  101 (240)
T TIGR02072        35 PASVLDIGCGTGYLTRALLKRFPQA-EFIALDISAGMLAQAKTKLS----ENVQFICGDAEKLPL--------EDSSFDL  101 (240)
T ss_pred             CCeEEEECCCccHHHHHHHHhCCCC-cEEEEeChHHHHHHHHHhcC----CCCeEEecchhhCCC--------CCCceeE
Confidence            4789999999999999999888543 47899999988776655332    111234567665431        1146899


Q ss_pred             EEecCCCCCc
Q 008149          523 VICQNSVPQI  532 (576)
Q Consensus       523 VIGGpPCQ~F  532 (576)
                      |+....++.+
T Consensus       102 vi~~~~l~~~  111 (240)
T TIGR02072       102 IVSNLALQWC  111 (240)
T ss_pred             EEEhhhhhhc
Confidence            9987766543

This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.

>PRK12335 tellurite resistance protein TehB; Provisional

Probab=88.80  E-value=1  Score=46.48  Aligned_cols=43  Identities=21%  Similarity=0.247  Sum_probs=36.5

Q ss_pred             CcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhh
Q 008149          444 LTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWES  489 (576)
Q Consensus       444 l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~  489 (576)
                      -+|||+=||.|...+-|.+.|.+   |.++|+++.+....+.....
T Consensus       122 ~~vLDlGcG~G~~~~~la~~g~~---V~avD~s~~ai~~~~~~~~~  164 (287)
T PRK12335        122 GKALDLGCGQGRNSLYLALLGFD---VTAVDINQQSLENLQEIAEK  164 (287)
T ss_pred             CCEEEeCCCCCHHHHHHHHCCCE---EEEEECCHHHHHHHHHHHHH
Confidence            38999999999999999888974   68999999998887766543

>PF07499 RuvA_C: RuvA, C-terminal domain; InterPro: IPR011114 In prokaryotes, RuvA, RuvB, and RuvC process the universal DNA intermediate of homologous recombination, termed Holliday junction

Probab=88.76  E-value=0.96  Score=34.95  Aligned_cols=39  Identities=23%  Similarity=0.240  Sum_probs=30.5

Q ss_pred             hhhhhHHHhcCCCChHHHHHHHHHh--CCCCcHHHHHHHHH
Q 008149           16 HIEKRASLLMMNFSVNEVDFALDKL--GKDAPVYELVDFIT   54 (576)
Q Consensus        16 ~s~~r~~li~MGFs~e~V~kAIqe~--Ge~~~~~~Ile~Ll   54 (576)
                      .++..+.|++.||++.+|.+|+++.  +++.++++++-.-|
T Consensus         3 ~~d~~~AL~~LGy~~~e~~~av~~~~~~~~~~~e~~ik~aL   43 (47)
T PF07499_consen    3 LEDALEALISLGYSKAEAQKAVSKLLEKPGMDVEELIKQAL   43 (47)
T ss_dssp             HHHHHHHHHHTTS-HHHHHHHHHHHHHSTTS-HHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHHHHHHHH
Confidence            4678899999999999999999999  67776777765444

The tetrameric DNA helicase RuvA specifically binds to the Holliday junction and facilitates the isomerization of the junction from the stacked folded configuration to the square-planar structure []. In the RuvA tetramer, each subunit consists of three domains, I, II and III, where I and II form the major core that is responsible for Holliday junction binding and base pair rearrangements of Holliday junction executed at the crossover point, whereas domain III regulates branch migration through direct contact with RuvB. The domain represents the C-terminal domain III of RuvA. This domain plays a significant role in the ATP-dependent branch migration of the hetero-duplex through direct contact with RuvB []. Within the Holliday junction, this domain makes no interaction with the DNA.; GO: 0005524 ATP binding, 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination, 0009379 Holliday junction helicase complex; PDB: 1HJP_A 1CUK_A 1C7Y_A 1IXS_A 1IXR_B 1BVS_E 2ZTC_A 2ZTD_B 2H5X_A.

>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A

Probab=88.65  E-value=0.88  Score=39.03  Aligned_cols=78  Identities=23%  Similarity=0.345  Sum_probs=50.6

Q ss_pred             ccccCCCCChhHHHHHHc---CCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCccE
Q 008149          446 MLSVFSGIGGAEVTLHRL---GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDF  522 (576)
Q Consensus       446 VLsLFSGiGG~slGL~~a---Gi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~DL  522 (576)
                      ||||=||.|-....|...   |.+ ..+.++|+++.+....+++....+. ...+...|++++..        ..+.+|+
T Consensus         1 ILDlgcG~G~~~~~l~~~~~~~~~-~~~~gvD~s~~~l~~~~~~~~~~~~-~~~~~~~D~~~l~~--------~~~~~D~   70 (101)
T PF13649_consen    1 ILDLGCGTGRVTRALARRFDAGPS-SRVIGVDISPEMLELAKKRFSEDGP-KVRFVQADARDLPF--------SDGKFDL   70 (101)
T ss_dssp             -EEET-TTSHHHHHHHHHS------SEEEEEES-HHHHHHHHHHSHHTTT-TSEEEESCTTCHHH--------HSSSEEE
T ss_pred             CEEeecCCcHHHHHHHHHhhhccc-ceEEEEECCHHHHHHHHHhchhcCC-ceEEEECCHhHCcc--------cCCCeeE
Confidence            689999999999888876   432 3578999999998888876643322 33457789877532        2358999


Q ss_pred             EEe-cCCCCCcc
Q 008149          523 VIC-QNSVPQIP  533 (576)
Q Consensus       523 VIG-GpPCQ~FS  533 (576)
                      |+. |..-+-|+
T Consensus        71 v~~~~~~~~~~~   82 (101)
T PF13649_consen   71 VVCSGLSLHHLS   82 (101)
T ss_dssp             EEE-TTGGGGSS
T ss_pred             EEEcCCccCCCC
Confidence            997 44333344

>PRK10742 putative methyltransferase; Provisional

Probab=88.47  E-value=1.7  Score=45.12  Aligned_cols=85  Identities=15%  Similarity=0.195  Sum_probs=55.9

Q ss_pred             CcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCcc--ccccccccChhhHHHhhhccCCcc
Q 008149          444 LTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELV--QIEDIQALTTKKFESLIHKLGSID  521 (576)
Q Consensus       444 l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~--~~~DI~~lt~~~Ie~l~~~~g~~D  521 (576)
                      .+|||+|+|.|..+.=+-.+|..   |..+|-++.....++.......+...+.  +...|+=+..+.+.-+......||
T Consensus        90 p~VLD~TAGlG~Da~~las~G~~---V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~~~~~fD  166 (250)
T PRK10742         90 PDVVDATAGLGRDAFVLASVGCR---VRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQ  166 (250)
T ss_pred             CEEEECCCCccHHHHHHHHcCCE---EEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhhCCCCCc
Confidence            48999999999998888888984   7899999999999987765432211111  012243334443332222224699


Q ss_pred             EEEecCCCCC
Q 008149          522 FVICQNSVPQ  531 (576)
Q Consensus       522 LVIGGpPCQ~  531 (576)
                      +|.-=||=..
T Consensus       167 VVYlDPMfp~  176 (250)
T PRK10742        167 VVYLDPMFPH  176 (250)
T ss_pred             EEEECCCCCC
Confidence            9999987443

>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]

Probab=88.28  E-value=1.3  Score=47.97  Aligned_cols=77  Identities=25%  Similarity=0.251  Sum_probs=52.3

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCcccc-ccccccChhhHHHhhhccCCc
Q 008149          442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQI-EDIQALTTKKFESLIHKLGSI  520 (576)
Q Consensus       442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~-~DI~~lt~~~Ie~l~~~~g~~  520 (576)
                      .|-.|||=|||.||+-+-.-..|..   ++++||+....+=-+.|.+..+-.+-.+.. .|++++.   +.+     ..|
T Consensus       197 ~G~~vlDPFcGTGgiLiEagl~G~~---viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lp---l~~-----~~v  265 (347)
T COG1041         197 RGELVLDPFCGTGGILIEAGLMGAR---VIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNLP---LRD-----NSV  265 (347)
T ss_pred             cCCEeecCcCCccHHHHhhhhcCce---EeecchHHHHHhhhhhhhhhhCcCceeEEEecccccCC---CCC-----Ccc
Confidence            3567999999999999988899985   678899988766555554433212221222 3666665   211     149


Q ss_pred             cEEEecCCC
Q 008149          521 DFVICQNSV  529 (576)
Q Consensus       521 DLVIGGpPC  529 (576)
                      |-|+.=||=
T Consensus       266 daIatDPPY  274 (347)
T COG1041         266 DAIATDPPY  274 (347)
T ss_pred             ceEEecCCC
Confidence            999999984

>PRK10258 biotin biosynthesis protein BioC; Provisional

Probab=88.05  E-value=1.1  Score=44.85  Aligned_cols=86  Identities=15%  Similarity=0.083  Sum_probs=55.3

Q ss_pred             ccccchhhhccccccCCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccc
Q 008149          425 QTDTLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQA  504 (576)
Q Consensus       425 ~vdtv~~~lsvLK~~f~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~  504 (576)
                      |......+++.|..  ...-+|||+=||.|.+...|...|.   .++++|+++...+..+...     ....++.+|+.+
T Consensus        27 q~~~a~~l~~~l~~--~~~~~vLDiGcG~G~~~~~l~~~~~---~v~~~D~s~~~l~~a~~~~-----~~~~~~~~d~~~   96 (251)
T PRK10258         27 QRQSADALLAMLPQ--RKFTHVLDAGCGPGWMSRYWRERGS---QVTALDLSPPMLAQARQKD-----AADHYLAGDIES   96 (251)
T ss_pred             HHHHHHHHHHhcCc--cCCCeEEEeeCCCCHHHHHHHHcCC---eEEEEECCHHHHHHHHhhC-----CCCCEEEcCccc
Confidence            33333334455543  2346799999999999988888774   4789999999877665421     112245677766


Q ss_pred             cChhhHHHhhhccCCccEEEecCC
Q 008149          505 LTTKKFESLIHKLGSIDFVICQNS  528 (576)
Q Consensus       505 lt~~~Ie~l~~~~g~~DLVIGGpP  528 (576)
                      +.-        .-+.||+|+...+
T Consensus        97 ~~~--------~~~~fD~V~s~~~  112 (251)
T PRK10258         97 LPL--------ATATFDLAWSNLA  112 (251)
T ss_pred             CcC--------CCCcEEEEEECch
Confidence            531        1146899986543

>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2

Probab=87.92  E-value=0.57  Score=50.93  Aligned_cols=63  Identities=22%  Similarity=0.290  Sum_probs=43.9

Q ss_pred             hccccchhhhccccccCCCCCcccccCCCCC--hhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhh
Q 008149          424 FQTDTLGYHLSVLKSMFPGGLTMLSVFSGIG--GAEVTLHRLGIKLKGVISIETSETNRRILKRWWES  489 (576)
Q Consensus       424 f~vdtv~~~lsvLK~~f~~~l~VLsLFSGiG--G~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~  489 (576)
                      .++-.+. .+++++.-...++++||-+||+|  |+.++.+-.|.  ..|+++|+|+.|.+..+.|-+-
T Consensus        32 lsvl~~~-~~~~~~~~~~~~~~~lDalaasGvR~iRy~~E~~~~--~~v~~NDi~~~a~~~i~~N~~~   96 (377)
T PF02005_consen   32 LSVLAIR-YLAVLKEKRKGPIRVLDALAASGVRGIRYAKELAGV--DKVTANDISPEAVELIKRNLEL   96 (377)
T ss_dssp             HHHHH----HHHHHHCH-S-EEEEETT-TTSHHHHHHHHH-SSE--CEEEEEES-HHHHHHHHHHHHH
T ss_pred             eeehhHH-HHHHhhhhhcCCceEEeccccccHHHHHHHHHcCCC--CEEEEecCCHHHHHHHHHhHhh
Confidence            4554444 45666665556799999999999  99999997776  4689999999999999987643

1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.

>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional

Probab=87.90  E-value=1.5  Score=44.90  Aligned_cols=72  Identities=24%  Similarity=0.316  Sum_probs=46.7

Q ss_pred             hhHHHHhcCCCCCcccCCCChHHHHHHhhhhhccccchhhhccccccCCCCCcccccCCCCChhHHHHHH-cCCceeeEE
Q 008149          393 EHIELILGYPSNHTQAAGNSLTARLESLRHCFQTDTLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHR-LGIKLKGVI  471 (576)
Q Consensus       393 ~E~E~i~GfP~~~T~~~~~~~teR~k~Lg~sf~vdtv~~~lsvLK~~f~~~l~VLsLFSGiGG~slGL~~-aGi~~k~vv  471 (576)
                      .=.|+|||.-.-|+-  ++..++..               ++.|.  .+.+.+|||+=||.|+....+.. .|.   .|.
T Consensus        22 ~~~e~~~g~~~~~~g--g~~~~~~~---------------l~~l~--l~~~~~VLDiGcG~G~~a~~la~~~~~---~v~   79 (263)
T PTZ00098         22 KAYEFIFGEDYISSG--GIEATTKI---------------LSDIE--LNENSKVLDIGSGLGGGCKYINEKYGA---HVH   79 (263)
T ss_pred             hhHHHHhCCCCCCCC--chHHHHHH---------------HHhCC--CCCCCEEEEEcCCCChhhHHHHhhcCC---EEE
Confidence            345788887655553  44444332               22221  23567899999999998877744 354   378


Q ss_pred             EeeCCHHHHHHHHHH
Q 008149          472 SIETSETNRRILKRW  486 (576)
Q Consensus       472 avEid~~a~~t~k~~  486 (576)
                      ++|+++......+..
T Consensus        80 giD~s~~~~~~a~~~   94 (263)
T PTZ00098         80 GVDICEKMVNIAKLR   94 (263)
T ss_pred             EEECCHHHHHHHHHH
Confidence            999999877666654

>PRK13255 thiopurine S-methyltransferase; Reviewed

Probab=87.84  E-value=1.2  Score=44.71  Aligned_cols=40  Identities=25%  Similarity=0.302  Sum_probs=35.0

Q ss_pred             CCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHH
Q 008149          441 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRIL  483 (576)
Q Consensus       441 ~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~  483 (576)
                      +.+-+||++.||.|--.+-|...|++   |++||+++.|++.+
T Consensus        36 ~~~~rvL~~gCG~G~da~~LA~~G~~---V~avD~s~~Ai~~~   75 (218)
T PRK13255         36 PAGSRVLVPLCGKSLDMLWLAEQGHE---VLGVELSELAVEQF   75 (218)
T ss_pred             CCCCeEEEeCCCChHhHHHHHhCCCe---EEEEccCHHHHHHH
Confidence            44679999999999999999999985   78999999998764

>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional

Probab=87.83  E-value=1.2  Score=43.76  Aligned_cols=44  Identities=30%  Similarity=0.278  Sum_probs=35.6

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhh
Q 008149          442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWE  488 (576)
Q Consensus       442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~  488 (576)
                      .+.+||++.||.|.+...+.+.|..   ++++|+++......+....
T Consensus        48 ~~~~vLdiG~G~G~~~~~l~~~~~~---v~~iD~s~~~~~~a~~~~~   91 (233)
T PRK05134         48 FGKRVLDVGCGGGILSESMARLGAD---VTGIDASEENIEVARLHAL   91 (233)
T ss_pred             CCCeEEEeCCCCCHHHHHHHHcCCe---EEEEcCCHHHHHHHHHHHH
Confidence            4678999999999999988888853   6889999998776665543

>PLN02233 ubiquinone biosynthesis methyltransferase

Probab=87.82  E-value=1.8  Score=44.28  Aligned_cols=78  Identities=17%  Similarity=0.077  Sum_probs=49.2

Q ss_pred             CCCcccccCCCCChhHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHhh---hcCCCCCccccccccccChhhHHHhhhcc
Q 008149          442 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWE---SSGQTGELVQIEDIQALTTKKFESLIHKL  517 (576)
Q Consensus       442 ~~l~VLsLFSGiGG~slGL~~a-Gi~~k~vvavEid~~a~~t~k~~~~---~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~  517 (576)
                      .+.+|||+-||.|.+...+.+. |-. ..|+++|+++...+..+....   ........++.+|+.++.-.        -
T Consensus        73 ~~~~VLDlGcGtG~~~~~la~~~~~~-~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~--------~  143 (261)
T PLN02233         73 MGDRVLDLCCGSGDLAFLLSEKVGSD-GKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFD--------D  143 (261)
T ss_pred             CCCEEEEECCcCCHHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCC--------C
Confidence            4678999999999998877653 422 247899999998776654221   00111122456777665421        1


Q ss_pred             CCccEEEecCC
Q 008149          518 GSIDFVICQNS  528 (576)
Q Consensus       518 g~~DLVIGGpP  528 (576)
                      +.||+|+.+.-
T Consensus       144 ~sfD~V~~~~~  154 (261)
T PLN02233        144 CYFDAITMGYG  154 (261)
T ss_pred             CCEeEEEEecc
Confidence            46999986543

>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase

Probab=87.82  E-value=1.6  Score=42.37  Aligned_cols=82  Identities=20%  Similarity=0.104  Sum_probs=53.0

Q ss_pred             CCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCccE
Q 008149          443 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDF  522 (576)
Q Consensus       443 ~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~DL  522 (576)
                      ..++||+=||.|.+.+.+.+..= -..++++|+++......+++....+.....++.+|+.++....+     ..+.+|.
T Consensus        17 ~~~ilDiGcG~G~~~~~la~~~p-~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~-----~~~~~d~   90 (194)
T TIGR00091        17 APLHLEIGCGKGRFLIDMAKQNP-DKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFF-----PDGSLSK   90 (194)
T ss_pred             CceEEEeCCCccHHHHHHHHhCC-CCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhC-----CCCceeE
Confidence            45799999999999988887642 23589999999877665555443322222345567765432111     1246999


Q ss_pred             EEecCCCC
Q 008149          523 VICQNSVP  530 (576)
Q Consensus       523 VIGGpPCQ  530 (576)
                      |+--+|.-
T Consensus        91 v~~~~pdp   98 (194)
T TIGR00091        91 VFLNFPDP   98 (194)
T ss_pred             EEEECCCc
Confidence            99887744

In E. coli, this protein flanks the DNA repair protein MutY, also called micA.

>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases

Probab=87.51  E-value=1.5  Score=42.02  Aligned_cols=74  Identities=22%  Similarity=0.163  Sum_probs=49.6

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 008149          442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  521 (576)
Q Consensus       442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~D  521 (576)
                      .+.+|||+-||.|.+...+.+.+-....++++|+++......+.... . .....+..+|+.++..        ..+.+|
T Consensus        39 ~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~-~-~~~i~~~~~d~~~~~~--------~~~~~D  108 (223)
T TIGR01934        39 KGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE-L-PLNIEFIQADAEALPF--------EDNSFD  108 (223)
T ss_pred             CCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc-c-CCCceEEecchhcCCC--------CCCcEE
Confidence            46789999999999999888776431357899999988777766542 1 1112244567665431        114688


Q ss_pred             EEEe
Q 008149          522 FVIC  525 (576)
Q Consensus       522 LVIG  525 (576)
                      +|+.
T Consensus       109 ~i~~  112 (223)
T TIGR01934       109 AVTI  112 (223)
T ss_pred             EEEE
Confidence            8874

Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.

>PRK05785 hypothetical protein; Provisional

Probab=87.43  E-value=1.3  Score=44.26  Aligned_cols=73  Identities=16%  Similarity=0.183  Sum_probs=49.6

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 008149          442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  521 (576)
Q Consensus       442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~D  521 (576)
                      .+-+|||+=||.|-+...|.+.+ . ..|+++|+++...+.-+.    .   .. ...+|..++.-.        -+.||
T Consensus        51 ~~~~VLDlGcGtG~~~~~l~~~~-~-~~v~gvD~S~~Ml~~a~~----~---~~-~~~~d~~~lp~~--------d~sfD  112 (226)
T PRK05785         51 RPKKVLDVAAGKGELSYHFKKVF-K-YYVVALDYAENMLKMNLV----A---DD-KVVGSFEALPFR--------DKSFD  112 (226)
T ss_pred             CCCeEEEEcCCCCHHHHHHHHhc-C-CEEEEECCCHHHHHHHHh----c---cc-eEEechhhCCCC--------CCCEE
Confidence            35789999999999888888773 1 247899999998765442    1   11 235666655321        25799


Q ss_pred             EEEecCCCCCc
Q 008149          522 FVICQNSVPQI  532 (576)
Q Consensus       522 LVIGGpPCQ~F  532 (576)
                      +|+.++-.+.+
T Consensus       113 ~v~~~~~l~~~  123 (226)
T PRK05785        113 VVMSSFALHAS  123 (226)
T ss_pred             EEEecChhhcc
Confidence            99987755443

>PRK00811 spermidine synthase; Provisional

Probab=87.19  E-value=1  Score=46.69  Aligned_cols=78  Identities=15%  Similarity=0.224  Sum_probs=52.9

Q ss_pred             CCCCcccccCCCCChhHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHhhhcC-----CCCCccccccccccChhhHHHhh
Q 008149          441 PGGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSG-----QTGELVQIEDIQALTTKKFESLI  514 (576)
Q Consensus       441 ~~~l~VLsLFSGiGG~slGL~~a-Gi~~k~vvavEid~~a~~t~k~~~~~tn-----~~g~l~~~~DI~~lt~~~Ie~l~  514 (576)
                      +++-+||+|-+|.|++..-+.+. +.  +-|..||+|+...+..+.++...+     .+...++.+|..+.-.       
T Consensus        75 ~~p~~VL~iG~G~G~~~~~~l~~~~~--~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~-------  145 (283)
T PRK00811         75 PNPKRVLIIGGGDGGTLREVLKHPSV--EKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVA-------  145 (283)
T ss_pred             CCCCEEEEEecCchHHHHHHHcCCCC--CEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHh-------
Confidence            45678999999999998766554 54  458899999999999998875321     1122244566544221       


Q ss_pred             hccCCccEEEecC
Q 008149          515 HKLGSIDFVICQN  527 (576)
Q Consensus       515 ~~~g~~DLVIGGp  527 (576)
                      ...+.+|+|+.-.
T Consensus       146 ~~~~~yDvIi~D~  158 (283)
T PRK00811        146 ETENSFDVIIVDS  158 (283)
T ss_pred             hCCCcccEEEECC
Confidence            1135799999854

>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed

Probab=87.18  E-value=1.3  Score=49.51  Aligned_cols=86  Identities=10%  Similarity=0.103  Sum_probs=58.5

Q ss_pred             CCCcccccCCCCChhHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 008149          442 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI  520 (576)
Q Consensus       442 ~~l~VLsLFSGiGG~slGL~~a-Gi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~  520 (576)
                      .+.+|||+.||-||=+..+..+ +-. -.++|+|+++.-.++++.+-+..+.....+...|.+++..     .  ..+.|
T Consensus       113 pg~~VLD~CAAPGgKTt~la~~l~~~-g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~-----~--~~~~f  184 (470)
T PRK11933        113 APQRVLDMAAAPGSKTTQIAALMNNQ-GAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGA-----A--LPETF  184 (470)
T ss_pred             CCCEEEEeCCCccHHHHHHHHHcCCC-CEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhh-----h--chhhc
Confidence            4678999999999999877653 111 1488999999988898887665432222233445444321     1  11469


Q ss_pred             cEEEecCCCCCcccc
Q 008149          521 DFVICQNSVPQIPNS  535 (576)
Q Consensus       521 DLVIGGpPCQ~FS~a  535 (576)
                      |.|+==.||.+...-
T Consensus       185 D~ILvDaPCSG~G~~  199 (470)
T PRK11933        185 DAILLDAPCSGEGTV  199 (470)
T ss_pred             CeEEEcCCCCCCccc
Confidence            999999999987643

>PLN02781 Probable caffeoyl-CoA O-methyltransferase

Probab=86.69  E-value=1.7  Score=43.85  Aligned_cols=92  Identities=14%  Similarity=0.145  Sum_probs=56.9

Q ss_pred             hhhhccccccCCCCCcccccCCCCChhHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHhhhcCCCC-CccccccccccCh
Q 008149          430 GYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTT  507 (576)
Q Consensus       430 ~~~lsvLK~~f~~~l~VLsLFSGiGG~slGL~~a-Gi~~k~vvavEid~~a~~t~k~~~~~tn~~g-~l~~~~DI~~lt~  507 (576)
                      +.+|+.|-...+ +-+||++.+|+|...+.+.++ +-. -.|+++|+++.+.+..+.+|...+... ..++.+|..++  
T Consensus        57 g~~L~~l~~~~~-~~~vLEiGt~~G~s~l~la~~~~~~-g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~--  132 (234)
T PLN02781         57 GLFLSMLVKIMN-AKNTLEIGVFTGYSLLTTALALPED-GRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSA--  132 (234)
T ss_pred             HHHHHHHHHHhC-CCEEEEecCcccHHHHHHHHhCCCC-CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHH--
Confidence            444444444443 457999999999866655442 212 248899999999999999998765322 12345666432  


Q ss_pred             hhHHHhhhc--cCCccEEEecC
Q 008149          508 KKFESLIHK--LGSIDFVICQN  527 (576)
Q Consensus       508 ~~Ie~l~~~--~g~~DLVIGGp  527 (576)
                        +..+...  .+.||+|+-..
T Consensus       133 --L~~l~~~~~~~~fD~VfiDa  152 (234)
T PLN02781        133 --LDQLLNNDPKPEFDFAFVDA  152 (234)
T ss_pred             --HHHHHhCCCCCCCCEEEECC
Confidence              2222221  25799988654

>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase

Probab=86.64  E-value=1.5  Score=42.61  Aligned_cols=43  Identities=37%  Similarity=0.359  Sum_probs=35.0

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHh
Q 008149          442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWW  487 (576)
Q Consensus       442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~  487 (576)
                      .+.+|||+-||.|.+...+.+.|..   ++++|+++......+...
T Consensus        45 ~~~~vLdlG~G~G~~~~~l~~~~~~---v~~iD~s~~~~~~a~~~~   87 (224)
T TIGR01983        45 FGLRVLDVGCGGGLLSEPLARLGAN---VTGIDASEENIEVAKLHA   87 (224)
T ss_pred             CCCeEEEECCCCCHHHHHHHhcCCe---EEEEeCCHHHHHHHHHHH
Confidence            3688999999999999888888763   788999998776666544

This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.

>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases

Probab=86.23  E-value=0.85  Score=43.54  Aligned_cols=40  Identities=33%  Similarity=0.428  Sum_probs=31.1

Q ss_pred             CCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHH
Q 008149          441 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRIL  483 (576)
Q Consensus       441 ~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~  483 (576)
                      +.+=.|||.|+|.|...++..++|-+   .+++|+++..+++-
T Consensus       190 ~~gdiVlDpF~GSGTT~~aa~~l~R~---~ig~E~~~~y~~~a  229 (231)
T PF01555_consen  190 NPGDIVLDPFAGSGTTAVAAEELGRR---YIGIEIDEEYCEIA  229 (231)
T ss_dssp             -TT-EEEETT-TTTHHHHHHHHTT-E---EEEEESSHHHHHHH
T ss_pred             ccceeeehhhhccChHHHHHHHcCCe---EEEEeCCHHHHHHh
Confidence            34566999999999999999999954   68899999976654

In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....

>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed

Probab=86.04  E-value=2.1  Score=41.54  Aligned_cols=76  Identities=21%  Similarity=0.167  Sum_probs=50.0

Q ss_pred             CCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCC-CCccccccccccChhhHHHhhhccCCcc
Q 008149          443 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQT-GELVQIEDIQALTTKKFESLIHKLGSID  521 (576)
Q Consensus       443 ~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~-g~l~~~~DI~~lt~~~Ie~l~~~~g~~D  521 (576)
                      +.+|||+-||.|++...+...+-....++++|+++......+.++...+.. ...+...|+.++..        ..+.+|
T Consensus        52 ~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~--------~~~~~D  123 (239)
T PRK00216         52 GDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPF--------PDNSFD  123 (239)
T ss_pred             CCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCC--------CCCCcc
Confidence            578999999999999888877621245789999998877777665432111 12234466655431        124688


Q ss_pred             EEEec
Q 008149          522 FVICQ  526 (576)
Q Consensus       522 LVIGG  526 (576)
                      +|+..
T Consensus       124 ~I~~~  128 (239)
T PRK00216        124 AVTIA  128 (239)
T ss_pred             EEEEe
Confidence            88753

>PRK01683 trans-aconitate 2-methyltransferase; Provisional

Probab=85.27  E-value=1.9  Score=43.14  Aligned_cols=74  Identities=12%  Similarity=0.082  Sum_probs=49.9

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 008149          442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  521 (576)
Q Consensus       442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~D  521 (576)
                      .+.+|||+=||.|.+...|.+.. +-..|+++|+++...+..+....     ...++.+|+.++..         .+.+|
T Consensus        31 ~~~~vLDiGcG~G~~~~~la~~~-~~~~v~gvD~s~~~i~~a~~~~~-----~~~~~~~d~~~~~~---------~~~fD   95 (258)
T PRK01683         31 NPRYVVDLGCGPGNSTELLVERW-PAARITGIDSSPAMLAEARSRLP-----DCQFVEADIASWQP---------PQALD   95 (258)
T ss_pred             CCCEEEEEcccCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHhCC-----CCeEEECchhccCC---------CCCcc
Confidence            46789999999999988887652 12358899999998877765431     12244567655432         13688


Q ss_pred             EEEecCCCC
Q 008149          522 FVICQNSVP  530 (576)
Q Consensus       522 LVIGGpPCQ  530 (576)
                      +|+.....+
T Consensus        96 ~v~~~~~l~  104 (258)
T PRK01683         96 LIFANASLQ  104 (258)
T ss_pred             EEEEccChh
Confidence            888766544

>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins

Probab=85.20  E-value=2.1  Score=44.62  Aligned_cols=87  Identities=20%  Similarity=0.188  Sum_probs=59.5

Q ss_pred             CCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCccE
Q 008149          443 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDF  522 (576)
Q Consensus       443 ~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~DL  522 (576)
                      +-+|||+.||-||=+..+..+-..--.++|+|+++.-...++.+....+.....+...|-+++.....      ...||.
T Consensus        86 ~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~~~------~~~fd~  159 (283)
T PF01189_consen   86 GERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDPKKP------ESKFDR  159 (283)
T ss_dssp             TSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHHHH------TTTEEE
T ss_pred             cccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeecccccccccc------ccccch
Confidence            56799999999999877766544234589999999999999887665543332222344444432221      125999


Q ss_pred             EEecCCCCCcccc
Q 008149          523 VICQNSVPQIPNS  535 (576)
Q Consensus       523 VIGGpPCQ~FS~a  535 (576)
                      |+-=.||.+....
T Consensus       160 VlvDaPCSg~G~i  172 (283)
T PF01189_consen  160 VLVDAPCSGLGTI  172 (283)
T ss_dssp             EEEECSCCCGGGT
T ss_pred             hhcCCCccchhhh
Confidence            9999999997543

In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....

>PLN02672 methionine S-methyltransferase

Probab=85.10  E-value=1.3  Score=54.28  Aligned_cols=46  Identities=9%  Similarity=-0.008  Sum_probs=37.5

Q ss_pred             CCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhh
Q 008149          443 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWES  489 (576)
Q Consensus       443 ~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~  489 (576)
                      +.+|+||=||.|-+.+.+...+= ...|+++||++.+...-+.|...
T Consensus       119 ~~~VLDlG~GSG~Iai~La~~~~-~~~v~avDis~~Al~~A~~Na~~  164 (1082)
T PLN02672        119 DKTVAELGCGNGWISIAIAEKWL-PSKVYGLDINPRAVKVAWINLYL  164 (1082)
T ss_pred             CCEEEEEecchHHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHH
Confidence            45899999999999999877642 23589999999999988887653

>PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes

Probab=84.93  E-value=0.53  Score=46.80  Aligned_cols=52  Identities=21%  Similarity=0.224  Sum_probs=34.0

Q ss_pred             hccccccCC--CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHh
Q 008149          433 LSVLKSMFP--GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWW  487 (576)
Q Consensus       433 lsvLK~~f~--~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~  487 (576)
                      +..+.+++|  ..-+++|+|+|.|+..+.+...+   ..|+..|+++.....++...
T Consensus         9 ~~~I~~~ip~~~~~~~vepF~G~g~V~~~~~~~~---~~vi~ND~~~~l~~~~~~~l   62 (260)
T PF02086_consen    9 AKWIIELIPKNKHKTYVEPFAGGGSVFLNLKQPG---KRVIINDINPDLINFWKAVL   62 (260)
T ss_dssp             HHHHHHHS-S-S-SEEEETT-TTSHHHHCC---S---SEEEEEES-HHHHHHHHHHH
T ss_pred             HHHHHHHcCCCCCCEEEEEecchhHHHHHhcccc---cceeeeechHHHHHHHHHHH
Confidence            334455666  47889999999999888776544   45788999999888877443

There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B.

>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=84.77  E-value=2.5  Score=45.15  Aligned_cols=77  Identities=19%  Similarity=0.160  Sum_probs=46.2

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 008149          442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  521 (576)
Q Consensus       442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~D  521 (576)
                      .+.+|||+.||.|.+..-+.++.-.-..|+++|+++......+......+.....++.+|..+...        ..+.+|
T Consensus        80 ~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~--------~~~~fD  151 (322)
T PRK13943         80 KGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVP--------EFAPYD  151 (322)
T ss_pred             CCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhccc--------ccCCcc
Confidence            467899999999999887766431111378999999876655554433322222234556543221        124577


Q ss_pred             EEEec
Q 008149          522 FVICQ  526 (576)
Q Consensus       522 LVIGG  526 (576)
                      +|+-+
T Consensus       152 ~Ii~~  156 (322)
T PRK13943        152 VIFVT  156 (322)
T ss_pred             EEEEC
Confidence            77754

>PRK14103 trans-aconitate 2-methyltransferase; Provisional

Probab=84.59  E-value=1.9  Score=43.31  Aligned_cols=74  Identities=12%  Similarity=0.113  Sum_probs=51.4

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 008149          442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  521 (576)
Q Consensus       442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~D  521 (576)
                      .+-+|||+=||.|.+...+.+..-. ..|+++|+++...+.-+.       .+..++.+|+.++..         .+.||
T Consensus        29 ~~~~vLDlGcG~G~~~~~l~~~~p~-~~v~gvD~s~~~~~~a~~-------~~~~~~~~d~~~~~~---------~~~fD   91 (255)
T PRK14103         29 RARRVVDLGCGPGNLTRYLARRWPG-AVIEALDSSPEMVAAARE-------RGVDARTGDVRDWKP---------KPDTD   91 (255)
T ss_pred             CCCEEEEEcCCCCHHHHHHHHHCCC-CEEEEEECCHHHHHHHHh-------cCCcEEEcChhhCCC---------CCCce
Confidence            4578999999999999888876311 237899999988765542       122345677765431         25799


Q ss_pred             EEEecCCCCCc
Q 008149          522 FVICQNSVPQI  532 (576)
Q Consensus       522 LVIGGpPCQ~F  532 (576)
                      +|+.....+-+
T Consensus        92 ~v~~~~~l~~~  102 (255)
T PRK14103         92 VVVSNAALQWV  102 (255)
T ss_pred             EEEEehhhhhC
Confidence            99998776544

>TIGR02081 metW methionine biosynthesis protein MetW

Probab=83.60  E-value=1.7  Score=41.99  Aligned_cols=81  Identities=21%  Similarity=0.214  Sum_probs=48.9

Q ss_pred             ccccCCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccc-cChhhHHHhh
Q 008149          436 LKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQA-LTTKKFESLI  514 (576)
Q Consensus       436 LK~~f~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~-lt~~~Ie~l~  514 (576)
                      +.+..+.+.+|||+-||.|.+...+.+.+.  ..++++|+++.+....+.    .   +..++..|+.+ +..  +    
T Consensus         7 i~~~i~~~~~iLDiGcG~G~~~~~l~~~~~--~~~~giD~s~~~i~~a~~----~---~~~~~~~d~~~~l~~--~----   71 (194)
T TIGR02081         7 ILNLIPPGSRVLDLGCGDGELLALLRDEKQ--VRGYGIEIDQDGVLACVA----R---GVNVIQGDLDEGLEA--F----   71 (194)
T ss_pred             HHHhcCCCCEEEEeCCCCCHHHHHHHhccC--CcEEEEeCCHHHHHHHHH----c---CCeEEEEEhhhcccc--c----
Confidence            344455667899999999999988865432  135789999987655432    1   11234455543 110  0    


Q ss_pred             hccCCccEEEecCCCCCc
Q 008149          515 HKLGSIDFVICQNSVPQI  532 (576)
Q Consensus       515 ~~~g~~DLVIGGpPCQ~F  532 (576)
                       .-+.+|+|+.....+.+
T Consensus        72 -~~~sfD~Vi~~~~l~~~   88 (194)
T TIGR02081        72 -PDKSFDYVILSQTLQAT   88 (194)
T ss_pred             -CCCCcCEEEEhhHhHcC
Confidence             11357888877655443

This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.

>PRK08317 hypothetical protein; Provisional

Probab=83.14  E-value=3.7  Score=39.43  Aligned_cols=45  Identities=27%  Similarity=0.184  Sum_probs=33.3

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHH
Q 008149          442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRW  486 (576)
Q Consensus       442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~  486 (576)
                      .+.+|||+-||.|++...+.+....-..++++|+++......+..
T Consensus        19 ~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~   63 (241)
T PRK08317         19 PGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKER   63 (241)
T ss_pred             CCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHH
Confidence            467899999999999888876531223578999998876655543

>PRK04148 hypothetical protein; Provisional

Probab=83.08  E-value=2.4  Score=40.09  Aligned_cols=69  Identities=14%  Similarity=0.148  Sum_probs=49.5

Q ss_pred             CCcccccCCCCCh-hHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 008149          443 GLTMLSVFSGIGG-AEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  521 (576)
Q Consensus       443 ~l~VLsLFSGiGG-~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~D  521 (576)
                      +.+++++=+|.|. +...|.++|++   |.++|+++.+....+..       +..+..+|+.+-+.+       .++++|
T Consensus        17 ~~kileIG~GfG~~vA~~L~~~G~~---ViaIDi~~~aV~~a~~~-------~~~~v~dDlf~p~~~-------~y~~a~   79 (134)
T PRK04148         17 NKKIVELGIGFYFKVAKKLKESGFD---VIVIDINEKAVEKAKKL-------GLNAFVDDLFNPNLE-------IYKNAK   79 (134)
T ss_pred             CCEEEEEEecCCHHHHHHHHHCCCE---EEEEECCHHHHHHHHHh-------CCeEEECcCCCCCHH-------HHhcCC
Confidence            4789999999776 78889999985   68999999987665532       334667888765532       235677


Q ss_pred             EEEecCC
Q 008149          522 FVICQNS  528 (576)
Q Consensus       522 LVIGGpP  528 (576)
                      +|----|
T Consensus        80 liysirp   86 (134)
T PRK04148         80 LIYSIRP   86 (134)
T ss_pred             EEEEeCC
Confidence            7765444

>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB

Probab=83.05  E-value=3.2  Score=41.35  Aligned_cols=41  Identities=22%  Similarity=0.240  Sum_probs=34.5

Q ss_pred             CCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHH
Q 008149          443 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRW  486 (576)
Q Consensus       443 ~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~  486 (576)
                      +-++|||=||-|.=++=|.+.|++   |.|+|+++.+...++..
T Consensus        31 ~g~~LDlgcG~GRNalyLA~~G~~---VtAvD~s~~al~~l~~~   71 (192)
T PF03848_consen   31 PGKALDLGCGEGRNALYLASQGFD---VTAVDISPVALEKLQRL   71 (192)
T ss_dssp             SSEEEEES-TTSHHHHHHHHTT-E---EEEEESSHHHHHHHHHH
T ss_pred             CCcEEEcCCCCcHHHHHHHHCCCe---EEEEECCHHHHHHHHHH
Confidence            468999999999999999999996   68999999998877654

When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.

>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []

Probab=82.90  E-value=2.7  Score=42.66  Aligned_cols=77  Identities=22%  Similarity=0.266  Sum_probs=43.8

Q ss_pred             CCCcccccCCCCChhHHHHHH-cCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 008149          442 GGLTMLSVFSGIGGAEVTLHR-LGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI  520 (576)
Q Consensus       442 ~~l~VLsLFSGiGG~slGL~~-aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~  520 (576)
                      .+.+|||+-||.|=++..+.+ +|-.. -|+++|+++.-.+.-+.--.+..........+|..++.-.+        +.|
T Consensus        47 ~g~~vLDv~~GtG~~~~~l~~~~~~~~-~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~~d--------~sf  117 (233)
T PF01209_consen   47 PGDRVLDVACGTGDVTRELARRVGPNG-KVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPFPD--------NSF  117 (233)
T ss_dssp             S--EEEEET-TTSHHHHHHGGGSS----EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S-T--------T-E
T ss_pred             CCCEEEEeCCChHHHHHHHHHHCCCcc-EEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcCCC--------Cce
Confidence            467999999999998887765 45332 47899999887766654332222222234567877775321        479


Q ss_pred             cEEEecC
Q 008149          521 DFVICQN  527 (576)
Q Consensus       521 DLVIGGp  527 (576)
                      |+|+.++
T Consensus       118 D~v~~~f  124 (233)
T PF01209_consen  118 DAVTCSF  124 (233)
T ss_dssp             EEEEEES
T ss_pred             eEEEHHh
Confidence            9999776

Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.

>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

Probab=82.87  E-value=3.5  Score=42.41  Aligned_cols=83  Identities=18%  Similarity=0.176  Sum_probs=53.6

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 008149          442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  521 (576)
Q Consensus       442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~D  521 (576)
                      .|.+|||+-||.|=+.+.+.+..=.- -|+++|+++.-.+.-+.-..+.+..+.-++.+|..+|.-.        -..||
T Consensus        51 ~g~~vLDva~GTGd~a~~~~k~~g~g-~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf~--------D~sFD  121 (238)
T COG2226          51 PGDKVLDVACGTGDMALLLAKSVGTG-EVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLPFP--------DNSFD  121 (238)
T ss_pred             CCCEEEEecCCccHHHHHHHHhcCCc-eEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCCCC--------CCccC
Confidence            58999999999999998887643233 4789999988766655432222111122346776666521        14789


Q ss_pred             EEEecCCCCCcc
Q 008149          522 FVICQNSVPQIP  533 (576)
Q Consensus       522 LVIGGpPCQ~FS  533 (576)
                      +|+-++==+++.
T Consensus       122 ~vt~~fglrnv~  133 (238)
T COG2226         122 AVTISFGLRNVT  133 (238)
T ss_pred             EEEeeehhhcCC
Confidence            998877555554

>PRK11727 23S rRNA mA1618 methyltransferase; Provisional

Probab=82.56  E-value=3.8  Score=43.86  Aligned_cols=81  Identities=15%  Similarity=0.246  Sum_probs=49.2

Q ss_pred             CCCcccccCCCCChhHHHHH--HcCCceeeEEEeeCCHHHHHHHHHHhhhc-CCCCCc-c-ccccccccChhhHHHhhhc
Q 008149          442 GGLTMLSVFSGIGGAEVTLH--RLGIKLKGVISIETSETNRRILKRWWESS-GQTGEL-V-QIEDIQALTTKKFESLIHK  516 (576)
Q Consensus       442 ~~l~VLsLFSGiGG~slGL~--~aGi~~k~vvavEid~~a~~t~k~~~~~t-n~~g~l-~-~~~DI~~lt~~~Ie~l~~~  516 (576)
                      .+.++||+=||+|++..-+-  .-|.   .++++|||+.+...-+.+-..+ +..+.+ + ...|...+-    ..+...
T Consensus       114 ~~~~vLDIGtGag~I~~lLa~~~~~~---~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~----~~i~~~  186 (321)
T PRK11727        114 ANVRVLDIGVGANCIYPLIGVHEYGW---RFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIF----KGIIHK  186 (321)
T ss_pred             CCceEEEecCCccHHHHHHHhhCCCC---EEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhh----hccccc
Confidence            45889999999998865443  3354   3689999999998888776543 222211 1 112222221    111112


Q ss_pred             cCCccEEEecCCC
Q 008149          517 LGSIDFVICQNSV  529 (576)
Q Consensus       517 ~g~~DLVIGGpPC  529 (576)
                      .+.||+|+.=||=
T Consensus       187 ~~~fDlivcNPPf  199 (321)
T PRK11727        187 NERFDATLCNPPF  199 (321)
T ss_pred             CCceEEEEeCCCC
Confidence            3579999988883

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=82.45  E-value=1.6  Score=47.91  Aligned_cols=80  Identities=16%  Similarity=0.171  Sum_probs=51.1

Q ss_pred             CCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCccE
Q 008149          443 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDF  522 (576)
Q Consensus       443 ~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~DL  522 (576)
                      +.+||||-||.|.+...|.+.+.   .|+++|+++.....-+..  ........++..|+.+.... +     ..+.||+
T Consensus        38 ~~~vLDlGcG~G~~~~~la~~~~---~v~giD~s~~~l~~a~~~--~~~~~~i~~~~~d~~~~~~~-~-----~~~~fD~  106 (475)
T PLN02336         38 GKSVLELGAGIGRFTGELAKKAG---QVIALDFIESVIKKNESI--NGHYKNVKFMCADVTSPDLN-I-----SDGSVDL  106 (475)
T ss_pred             CCEEEEeCCCcCHHHHHHHhhCC---EEEEEeCCHHHHHHHHHH--hccCCceEEEEecccccccC-C-----CCCCEEE
Confidence            45899999999999999988764   478999999876543321  11111122445666432210 1     1247999


Q ss_pred             EEecCCCCCcc
Q 008149          523 VICQNSVPQIP  533 (576)
Q Consensus       523 VIGGpPCQ~FS  533 (576)
                      |+...++.-++
T Consensus       107 I~~~~~l~~l~  117 (475)
T PLN02336        107 IFSNWLLMYLS  117 (475)
T ss_pred             EehhhhHHhCC
Confidence            99888776544

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=81.89  E-value=3.4  Score=41.84  Aligned_cols=77  Identities=23%  Similarity=0.219  Sum_probs=47.0

Q ss_pred             CCCCcccccCCCCChhHHHH-HHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCC
Q 008149          441 PGGLTMLSVFSGIGGAEVTL-HRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGS  519 (576)
Q Consensus       441 ~~~l~VLsLFSGiGG~slGL-~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~  519 (576)
                      +.+-+|||+=||.|...+-+ ...|-.. .|+++|+++......+.+....+.....+..+|+.+++-        .-+.
T Consensus        76 ~~g~~VLDiG~G~G~~~~~~a~~~g~~~-~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~--------~~~~  146 (272)
T PRK11873         76 KPGETVLDLGSGGGFDCFLAARRVGPTG-KVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPV--------ADNS  146 (272)
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHhCCCC-EEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCC--------CCCc
Confidence            35679999999987655433 3445432 478999999988877766543322222234466655431        1146


Q ss_pred             ccEEEec
Q 008149          520 IDFVICQ  526 (576)
Q Consensus       520 ~DLVIGG  526 (576)
                      ||+|+..
T Consensus       147 fD~Vi~~  153 (272)
T PRK11873        147 VDVIISN  153 (272)
T ss_pred             eeEEEEc
Confidence            8888854

>TIGR00417 speE spermidine synthase

Probab=81.54  E-value=4.4  Score=41.58  Aligned_cols=47  Identities=15%  Similarity=0.186  Sum_probs=36.5

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhh
Q 008149          442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWES  489 (576)
Q Consensus       442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~  489 (576)
                      ++-+||+|.+|.|++...+.+.+ ....+..+|+|+...+..+.++..
T Consensus        72 ~p~~VL~iG~G~G~~~~~ll~~~-~~~~v~~veid~~vi~~a~~~~~~  118 (270)
T TIGR00417        72 NPKHVLVIGGGDGGVLREVLKHK-SVEKATLVDIDEKVIELSKKFLPS  118 (270)
T ss_pred             CCCEEEEEcCCchHHHHHHHhCC-CcceEEEEeCCHHHHHHHHHHhHh
Confidence            44599999999999887766554 235588999999988888877643

the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.

>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2

Probab=81.47  E-value=2.3  Score=42.62  Aligned_cols=98  Identities=20%  Similarity=0.182  Sum_probs=59.8

Q ss_pred             ccccchhhhccccccCCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccc
Q 008149          425 QTDTLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQA  504 (576)
Q Consensus       425 ~vdtv~~~lsvLK~~f~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~  504 (576)
                      +...++..+..|+  ...+.+||++-||.|=++.-|..+.-+.-.|+++|+++.....-+.++...+.....+..+|...
T Consensus        57 ~P~~~a~~l~~L~--l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~  134 (209)
T PF01135_consen   57 APSMVARMLEALD--LKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSE  134 (209)
T ss_dssp             -HHHHHHHHHHTT--C-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGG
T ss_pred             HHHHHHHHHHHHh--cCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhh
Confidence            3346666677776  45689999999999977766665522323478999999877766666654433233345666543


Q ss_pred             cChhhHHHhhhccCCccEEEecCCCCCc
Q 008149          505 LTTKKFESLIHKLGSIDFVICQNSVPQI  532 (576)
Q Consensus       505 lt~~~Ie~l~~~~g~~DLVIGGpPCQ~F  532 (576)
                      --.        ..++||.|+-+.-|...
T Consensus       135 g~~--------~~apfD~I~v~~a~~~i  154 (209)
T PF01135_consen  135 GWP--------EEAPFDRIIVTAAVPEI  154 (209)
T ss_dssp             TTG--------GG-SEEEEEESSBBSS-
T ss_pred             ccc--------cCCCcCEEEEeeccchH
Confidence            221        23689999988776543

1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....

>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=81.16  E-value=2.4  Score=47.23  Aligned_cols=87  Identities=21%  Similarity=0.250  Sum_probs=57.1

Q ss_pred             hhhhhHHHhcCCCChHHHHHHHHHhCCCCcHHHHHHHHHHh-----hhcccccccCCCCCCCCCCCCCCCchhhhhh---
Q 008149           16 HIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAA-----QISENFEKETDDAPHDNDGTNEDKSDETLYG---   87 (576)
Q Consensus        16 ~s~~r~~li~MGFs~e~V~kAIqe~Ge~~~~~~Ile~Ll~~-----q~l~~~~~e~~ds~~~~~~~ne~~~~e~~~~---   87 (576)
                      .++..+.+++|||-++....|+..+-. + ++.-+.||..-     |.=++....+-.       -+    -+-.++   
T Consensus       303 ~d~~lsllv~mGfeesdaRlaLRsc~g-~-Vd~AvqfI~erre~laq~R~k~~a~Ere-------~~----~r~k~~n~~  369 (568)
T KOG2561|consen  303 NDETLSLLVGMGFEESDARLALRSCNG-D-VDSAVQFIIERREKLAQKREKDLARERE-------IL----ERKKYGNTP  369 (568)
T ss_pred             cchHHHHHHHcCCCchHHHHHHHhccc-c-HHHHHHHHHHHHHHHHHHHHhhHHHHHH-------HH----HHHHhcCCC
Confidence            456788999999999999999999733 5 88999999832     111111100000       00    000111   


Q ss_pred             -----hhHHHHHHHhcCCCHHHHHHHHHHhCCC
Q 008149           88 -----TMEITLQLLEMGFSENQVSLAIEKFGSK  115 (576)
Q Consensus        88 -----~~~k~~~L~~MGFseeEas~AI~r~G~d  115 (576)
                           .+..+..|+.|||..+-|..|+.|-.+|
T Consensus       370 ~~~wvn~rs~~rL~~mGyer~la~eaL~r~~Nd  402 (568)
T KOG2561|consen  370 MKKWVNPRSLERLVSMGYERELAAEALRRNEND  402 (568)
T ss_pred             cccccCHHHHHHHHhcchHhHHHHHHHHhccCc
Confidence                 2345668999999999999999996554

>PRK06202 hypothetical protein; Provisional

Probab=80.93  E-value=4.5  Score=40.05  Aligned_cols=80  Identities=19%  Similarity=0.225  Sum_probs=48.9

Q ss_pred             CCCCcccccCCCCChhHHHHHH----cCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhc
Q 008149          441 PGGLTMLSVFSGIGGAEVTLHR----LGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHK  516 (576)
Q Consensus       441 ~~~l~VLsLFSGiGG~slGL~~----aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~  516 (576)
                      ..+.+||||=||.|++...|.+    .|... -++++|+++...+..+..-.   ..+..+...|...+..        .
T Consensus        59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~-~v~gvD~s~~~l~~a~~~~~---~~~~~~~~~~~~~l~~--------~  126 (232)
T PRK06202         59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRL-EVTAIDPDPRAVAFARANPR---RPGVTFRQAVSDELVA--------E  126 (232)
T ss_pred             CCCcEEEEeccCCCHHHHHHHHHHHhCCCCc-EEEEEcCCHHHHHHHHhccc---cCCCeEEEEecccccc--------c
Confidence            3567899999999998887754    46543 37899999998776654211   1121222333332221        1


Q ss_pred             cCCccEEEecCCCCCc
Q 008149          517 LGSIDFVICQNSVPQI  532 (576)
Q Consensus       517 ~g~~DLVIGGpPCQ~F  532 (576)
                      -+.+|+|+...-..-+
T Consensus       127 ~~~fD~V~~~~~lhh~  142 (232)
T PRK06202        127 GERFDVVTSNHFLHHL  142 (232)
T ss_pred             CCCccEEEECCeeecC
Confidence            2579999986544333

>TIGR00438 rrmJ cell division protein FtsJ

Probab=80.75  E-value=3.8  Score=39.32  Aligned_cols=74  Identities=14%  Similarity=0.052  Sum_probs=45.3

Q ss_pred             CCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhh--ccC
Q 008149          441 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIH--KLG  518 (576)
Q Consensus       441 ~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~--~~g  518 (576)
                      +.+-+|||+=||.||++..+.+....-..++++|+++..    +       ..+..++..|+.+...  ++.+..  ..+
T Consensus        31 ~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~----~-------~~~i~~~~~d~~~~~~--~~~l~~~~~~~   97 (188)
T TIGR00438        31 KPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK----P-------IENVDFIRGDFTDEEV--LNKIRERVGDD   97 (188)
T ss_pred             CCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc----c-------CCCceEEEeeCCChhH--HHHHHHHhCCC
Confidence            346789999999999988776654322347899999853    1       1122244567765321  222211  124


Q ss_pred             CccEEEecC
Q 008149          519 SIDFVICQN  527 (576)
Q Consensus       519 ~~DLVIGGp  527 (576)
                      .+|+|+...
T Consensus        98 ~~D~V~~~~  106 (188)
T TIGR00438        98 KVDVVMSDA  106 (188)
T ss_pred             CccEEEcCC
Confidence            699999643

>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=80.59  E-value=4.5  Score=32.91  Aligned_cols=67  Identities=22%  Similarity=0.272  Sum_probs=44.9

Q ss_pred             cccCCCCChhHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCccEEEe
Q 008149          447 LSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDFVIC  525 (576)
Q Consensus       447 LsLFSGiGG~slGL~~a-Gi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~DLVIG  525 (576)
                      ||+=||.|-....|.+. +.   .++++|+++...+..+......   +..+...|+.++.-.        -+.||+|+.
T Consensus         1 LdiG~G~G~~~~~l~~~~~~---~v~~~D~~~~~~~~~~~~~~~~---~~~~~~~d~~~l~~~--------~~sfD~v~~   66 (95)
T PF08241_consen    1 LDIGCGTGRFAAALAKRGGA---SVTGIDISEEMLEQARKRLKNE---GVSFRQGDAEDLPFP--------DNSFDVVFS   66 (95)
T ss_dssp             EEET-TTSHHHHHHHHTTTC---EEEEEES-HHHHHHHHHHTTTS---TEEEEESBTTSSSS---------TT-EEEEEE
T ss_pred             CEecCcCCHHHHHHHhccCC---EEEEEeCCHHHHHHHHhccccc---CchheeehHHhCccc--------ccccccccc
Confidence            56778999999999888 54   4789999999888777665322   222667788777422        257999985


Q ss_pred             cC
Q 008149          526 QN  527 (576)
Q Consensus       526 Gp  527 (576)
                      ..
T Consensus        67 ~~   68 (95)
T PF08241_consen   67 NS   68 (95)
T ss_dssp             ES
T ss_pred             cc
Confidence            44

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	576
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-16
2qrv_A	295	DNA (cytosine-5)-methyltransferase 3A; DNA methylt	7e-10
2qrv_A	295	DNA (cytosine-5)-methyltransferase 3A; DNA methylt	6e-05
2pv0_B	386	DNA (cytosine-5)-methyltransferase 3-like; DNMT3L,	2e-05
3g7u_A	376	Cytosine-specific methyltransferase; DNA-binding,	4e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 82.2 bits (202), Expect = 2e-16
 Identities = 102/695 (14%), Positives = 195/695 (28%), Gaps = 262/695 (37%)

Query: 26  MNFSVNEVDFA--------LDKLGKDAPVYELVDFITAAQISENFEKETDD---APHDND 74
           M+F   E  +          D    +    ++ D   +  +S   ++E D    +     
Sbjct: 7   MDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSI-LS---KEEIDHIIMSKDAVS 62

Query: 75  GTN------EDKSDETLYGTMEITLQ-----LLE-MGFSENQVSLAIEKFGSKTPISELA 122
           GT         K +E +   +E  L+     L+  +   + Q S+    +       E  
Sbjct: 63  GTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMY------IEQR 116

Query: 123 DKIF-SGQIF--LDTPRSRSYDTVKV--------------------KT------------ 147
           D+++   Q+F   +  R + Y  ++                     KT            
Sbjct: 117 DRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKV 176

Query: 148 --------------EYCSPDVV--------SQSRKMNTSETSRGKRPKEEYFDDFSNSTS 185
                            SP+ V         Q     TS +      K            
Sbjct: 177 QCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLR-IHSIQAELR 235

Query: 186 QFQHVDFQENRKGKRPKQESLDDSSSFLDSSWEEKVKPNSSRYGMQQAFNSNPCRSI--- 242
           +             +P +  L      L +    K            AFN + C+ +   
Sbjct: 236 RLLK---------SKPYENCLLV----LLNVQNAKA---------WNAFNLS-CKILLTT 272

Query: 243 -NKVVAQPPYFFYGNVVDVSIDCWVKMSHFLYSLEPEFVNSQYFSALSRREGYLHNLPTT 301
             K V         + +  +    + + H   +L P+    +  S L +   YL   P  
Sbjct: 273 RFKQVT--------DFLSAATTTHISLDHHSMTLTPD----EVKSLLLK---YLDCRPQD 317

Query: 302 NRFHIPPEP----PMTIQDAIPHTKKWWPS-WDTRKHLSCINSGTSGISQLCERFEKLLR 356
               +P E     P  +   I  + +   + WD  KH++            C++   ++ 
Sbjct: 318 ----LPREVLTTNPRRL-SIIAESIRDGLATWDNWKHVN------------CDKLTTIIE 360

Query: 357 DSRGVLSSQQQRD------ILHRSEK-----LNLVWVGAYKLGPVDPEHIE-------LI 398
            S  VL   + R       +   S       L+L+W   + +   D   +        L+
Sbjct: 361 SSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIW---FDVIKSDVMVVVNKLHKYSLV 417

Query: 399 LGYPSNHT-----------------QAAGNSLTARLESLRHCFQTDT------------- 428
              P   T                  A   S+       +  F +D              
Sbjct: 418 EKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPK-TFDSDDLIPPYLDQYFYSH 476

Query: 429 LGYHLSVLK-----SMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRIL 483
           +G+HL  ++     ++F        VF       +    L  K+            R   
Sbjct: 477 IGHHLKNIEHPERMTLFR------MVF-------LDFRFLEQKI------------RHDS 511

Query: 484 KRWWESSGQTGELVQIEDIQALTTK---KFESLIHKLGSIDFVICQNSVPQIPNSK---- 536
             W  S      L Q++  +        K+E L++ +  +DF+        +  SK    
Sbjct: 512 TAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAI--LDFL--PKIEENLICSKYTDL 567

Query: 537 -QISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQR 570
            +I+      + AE +       +++ E  + VQR
Sbjct: 568 LRIA------LMAEDE-------AIFEEAHKQVQR 589

>2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens} Length = 295

 Score = 59.2 bits (143), Expect = 7e-10
 Identities = 28/133 (21%), Positives = 55/133 (41%), Gaps = 28/133 (21%)

Query: 444 LTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQ 503
           + +LS+F GI    + L  LGI++   I+ E  E +  +           G+++ + D++
Sbjct: 17  IRVLSLFDGIATGLLVLKDLGIQVDRYIASEVCEDSITVGMVR-----HQGKIMYVGDVR 71

Query: 504 ALTTKKFESLIHKLGSIDFVI----CQNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFS 559
           ++T K  +    + G  D VI    C +          +S     +       L +    
Sbjct: 72  SVTQKHIQ----EWGPFDLVIGGSPCND----------LSIVNPARK-----GLYEGTGR 112

Query: 560 LYYEFVRVVQRVR 572
           L++EF R++   R
Sbjct: 113 LFFEFYRLLHDAR 125

>2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens} Length = 295

 Score = 44.2 bits (104), Expect = 6e-05
 Identities = 35/193 (18%), Positives = 70/193 (36%), Gaps = 32/193 (16%)

Query: 248 QPPYFFYGNVVDVSIDCWVKMSHFLYSLEPEFVNSQYFSALSRREGYLHNLPTTNRFHIP 307
           +P ++ + NVV + +     +S FL S  P  ++++  SA  R   +  NLP  NR    
Sbjct: 132 RPFFWLFENVVAMGVSDKRDISRFLES-NPVMIDAKEVSAAHRARYFWGNLPGMNRPL-- 188

Query: 308 PEPPMTIQDAIPHTKKWWPSWDTRKHLSCINSGTSGISQLCERFEKLLRDSRGVLSSQQQ 367
                T+ D +   +        +                  +   +   S  +   + Q
Sbjct: 189 ---ASTVNDKLELQECLEHGRIAKF----------------SKVRTITTRSNSIKQGKDQ 229

Query: 368 RDILHRSEKLNLVWVGAYKLGPVDPEHIELILGYPSNHTQAAGNSLTARLESLRHCFQTD 427
              +  +EK +++W             +E + G+P ++T  +  S  AR   L   +   
Sbjct: 230 HFPVFMNEKEDILW----------CTEMERVFGFPVHYTDVSNMSRLARQRLLGRSWSVP 279

Query: 428 TLGYHLSVLKSMF 440
            + +  + LK  F
Sbjct: 280 VIRHLFAPLKEYF 292

>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B* Length = 386

 Score = 46.5 bits (109), Expect = 2e-05
 Identities = 13/84 (15%), Positives = 30/84 (35%), Gaps = 3/84 (3%)

Query: 248 QPPYFFYGNVVDVSIDCWVKMSHFLYSLEPEFVNSQYFSALSRREGYLHNLPTTNRFH-- 305
            P ++ + + + ++ +     S FL   EP  +   +  +L        N+P     H  
Sbjct: 278 GPFFWMFVDNLVLNKEDLDVASRFLEM-EPVTIPDVHGGSLQNAVRVWSNIPAIRSRHWA 336

Query: 306 IPPEPPMTIQDAIPHTKKWWPSWD 329
           +  E  +++      + K    W 
Sbjct: 337 LVSEEELSLLAQNKQSSKLAAKWP 360

>3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157} Length = 376

 Score = 41.6 bits (98), Expect = 4e-04
 Identities = 30/139 (21%), Positives = 46/139 (33%), Gaps = 40/139 (28%)

Query: 444 LTMLSVFSGIGGAEVTLHRLGIKLKGVI-----SIETSETNRRILKRWWESSGQTGELVQ 498
           L ++ +FSG+GG  +   R G  +K  +     +I T   N                L  
Sbjct: 3   LNVIDLFSGVGGLSLGAARAGFDVKMAVEIDQHAINTHAINFP------------RSLHV 50

Query: 499 IEDIQALTTKKFESLIHKLGSIDFVI----CQNSVPQIPNSKQ-ISNSKDPKMAAESDNL 553
            ED+  L  +  +        ID +I    CQ        S     N  D +      N 
Sbjct: 51  QEDVSLLNAEIIKGFFKNDMPIDGIIGGPPCQ------GFSSIGKGNPDDSR------N- 97

Query: 554 PDFDFSLYYEFVRVVQRVR 572
                 LY  F R+V  ++
Sbjct: 98  -----QLYMHFYRLVSELQ 111

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	576
3ubt_Y	331	Modification methylase HAEIII; protein-DNA complex	99.93
2qrv_A	295	DNA (cytosine-5)-methyltransferase 3A; DNA methylt	99.92
4h0n_A	333	DNMT2; SAH binding, transferase; HET: SAH; 2.71A {	99.9
3qv2_A	327	5-cytosine DNA methyltransferase; DNMT2, ehmeth; H	99.9
3me5_A	482	Cytosine-specific methyltransferase; structural ge	99.89
3g7u_A	376	Cytosine-specific methyltransferase; DNA-binding,	99.88
2c7p_A	327	Modification methylase HHAI; DNA methyltransferase	99.88
4ft4_B	784	DNA (cytosine-5)-methyltransferase 1; chromodomain	99.87
1g55_A	343	DNA cytosine methyltransferase DNMT2; human DNA me	99.87
4dkj_A	403	Cytosine-specific methyltransferase; CG-specificit	99.85
3swr_A	1002	DNA (cytosine-5)-methyltransferase 1; epigenetics,	99.79
3av4_A	1330	DNA (cytosine-5)-methyltransferase 1; CXXC-type zi	99.78
2qrv_B	230	DNA (cytosine-5)-methyltransferase 3-like; DNA met	99.77
2pv0_B	386	DNA (cytosine-5)-methyltransferase 3-like; DNMT3L,	99.73
2qrv_A	295	DNA (cytosine-5)-methyltransferase 3A; DNA methylt	99.57
4h0n_A	333	DNMT2; SAH binding, transferase; HET: SAH; 2.71A {	99.48
3qv2_A	327	5-cytosine DNA methyltransferase; DNMT2, ehmeth; H	99.41
4ae4_A	118	Ubiquitin-associated protein 1; protein transport,	99.17
3ubt_Y	331	Modification methylase HAEIII; protein-DNA complex	98.94
4dkj_A	403	Cytosine-specific methyltransferase; CG-specificit	98.92
2c7p_A	327	Modification methylase HHAI; DNA methyltransferase	98.83
3me5_A	482	Cytosine-specific methyltransferase; structural ge	98.83
1g55_A	343	DNA cytosine methyltransferase DNMT2; human DNA me	98.73
2qrv_B	230	DNA (cytosine-5)-methyltransferase 3-like; DNA met	98.64
2lbc_A	126	Ubiquitin carboxyl-terminal hydrolase 13; tandem U	98.52
4ft4_B	784	DNA (cytosine-5)-methyltransferase 1; chromodomain	98.32
3g7u_A	376	Cytosine-specific methyltransferase; DNA-binding,	98.14
3c0k_A	396	UPF0064 protein YCCW; PUA domain, adoMet dependent	97.81
2igt_A	332	SAM dependent methyltransferase; alpha-beta sandwi	97.77
2pv0_B	386	DNA (cytosine-5)-methyltransferase 3-like; DNMT3L,	97.7
3k6r_A	278	Putative transferase PH0793; structural genomics,	97.68
1wy7_A	207	Hypothetical protein PH1948; seven-stranded beta s	97.63
2frn_A	278	Hypothetical protein PH0793; structural genomics,	97.56
3gdh_A	241	Trimethylguanosine synthase homolog; M7G, CAP, dim	97.54
3swr_A	1002	DNA (cytosine-5)-methyltransferase 1; epigenetics,	97.47
2b78_A	385	Hypothetical protein SMU.776; structure genomics,	97.36
4dmg_A	393	Putative uncharacterized protein TTHA1493; rRNA, m	97.35
3p9n_A	189	Possible methyltransferase (methylase); RV2966C, a	97.32
1ws6_A	171	Methyltransferase; structural genomics, riken stru	97.29
2fpo_A	202	Methylase YHHF; structural genomics, putative meth	97.27
2ift_A	201	Putative methylase HI0767; NESG, Y767_haein, struc	97.26
3a27_A	272	TYW2, uncharacterized protein MJ1557; wybutosine m	97.25
3ajd_A	274	Putative methyltransferase MJ0026; tRNA, M5C, ross	97.18
2as0_A	396	Hypothetical protein PH1915; RNA methyltransferase	97.18
1wxx_A	382	TT1595, hypothetical protein TTHA1280; thermus the	97.11
2yx1_A	336	Hypothetical protein MJ0883; methyl transferase, t	97.07
3bt7_A	369	TRNA (uracil-5-)-methyltransferase; methyluridine,	97.06
1ne2_A	200	Hypothetical protein TA1320; structural genomics,	97.04
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	96.97
3lpm_A	259	Putative methyltransferase; structural genomics, p	96.93
3evz_A	230	Methyltransferase; NYSGXRC, NEW YORK SGX research	96.9
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	96.89
2fhp_A	187	Methylase, putative; alpha-beta-alpha sandwich, st	96.78
1ixk_A	315	Methyltransferase; open beta sheet; 1.90A {Pyrococ	96.76
3tma_A	354	Methyltransferase; thump domain; 2.05A {Thermus th	96.74
1oqy_A	368	HHR23A, UV excision repair protein RAD23 homolog A	96.74
1wgn_A	63	UBAP1, ubiquitin associated protein; ubiquitin ass	96.73
3av4_A	1330	DNA (cytosine-5)-methyltransferase 1; CXXC-type zi	96.71
2jjq_A	425	Uncharacterized RNA methyltransferase pyrab10780;	96.7
3tm4_A	373	TRNA (guanine N2-)-methyltransferase TRM14; rossma	96.69
3axs_A	392	Probable N(2),N(2)-dimethylguanosine tRNA methylt	96.66
2h1r_A	299	Dimethyladenosine transferase, putative; SGC toron	96.63
2b3t_A	276	Protein methyltransferase HEMK; translation termin	96.62
1whc_A	64	RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain	96.6
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	96.6
2b9e_A	309	NOL1/NOP2/SUN domain family, member 5 isoform 2; m	96.6
1vg5_A	73	RSGI RUH-014, rhomboid family protein; UBA domain,	96.6
2h00_A	254	Methyltransferase 10 domain containing protein; st	96.6
4dzr_A	215	Protein-(glutamine-N5) methyltransferase, release	96.56
1nv8_A	284	HEMK protein; class I adoMet-dependent methyltrans	96.53
1ify_A	49	HHR23A, UV excision repair protein RAD23 homolog A	96.53
2cos_A	54	Serine/threonine protein kinase LATS2; UBA domain,	96.52
2g3q_A	43	Protein YBL047C; endocytosis, solution structure,	96.48
2esr_A	177	Methyltransferase; structural genomics, hypothetic	96.45
2ekk_A	47	UBA domain from E3 ubiquitin-protein ligase HUWE1;	96.42
2ekk_A	47	UBA domain from E3 ubiquitin-protein ligase HUWE1;	96.4
2crn_A	64	Ubash3A protein; compact three-helix bundle, struc	96.4
3m4x_A	456	NOL1/NOP2/SUN family protein; mtase domain, PUA do	96.4
1ify_A	49	HHR23A, UV excision repair protein RAD23 homolog A	96.38
2g3q_A	43	Protein YBL047C; endocytosis, solution structure,	96.36
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	96.29
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	96.28
2dul_A	378	N(2),N(2)-dimethylguanosine tRNA methyltransferas;	96.27
3ll7_A	410	Putative methyltransferase; methytransferase, stru	96.27
2ozv_A	260	Hypothetical protein ATU0636; structural genomics,	96.27
1zq9_A	285	Probable dimethyladenosine transferase; SGC, struc	96.25
1uwv_A	433	23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m	96.24
2dak_A	63	Ubiquitin carboxyl-terminal hydrolase 5; isopeptid	96.23
3m6w_A	464	RRNA methylase; rRNA methyltransferase, 5-methylcy	96.22
1wgn_A	63	UBAP1, ubiquitin associated protein; ubiquitin ass	96.21
1vek_A	84	UBP14, ubiquitin-specific protease 14, putative; U	96.2
2dag_A	74	Ubiquitin carboxyl-terminal hydrolase 5; isopeptid	96.18
1wji_A	63	Tudor domain containing protein 3; UBA domain, str	96.15
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	96.14
2frx_A	479	Hypothetical protein YEBU; rossmann-type S-adenosy	96.14
2vdv_E	246	TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl	96.1
1vg5_A	73	RSGI RUH-014, rhomboid family protein; UBA domain,	96.08
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	96.08
3dmg_A	381	Probable ribosomal RNA small subunit methyltransf;	96.07
1z96_A	40	DNA-damage, UBA-domain protein MUD1; ubiquitin, th	96.06
1veg_A	83	NEDD8 ultimate buster-1; ubiquitin associated doma	96.05
2dak_A	63	Ubiquitin carboxyl-terminal hydrolase 5; isopeptid	96.03
3k0b_A	393	Predicted N6-adenine-specific DNA methylase; methy	95.99
2f8l_A	344	Hypothetical protein LMO1582; structural genomics,	95.95
3gru_A	295	Dimethyladenosine transferase; rossman fold, ribos	95.92
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	95.92
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	95.91
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	95.9
3ldu_A	385	Putative methylase; structural genomics, PSI-2, pr	95.88
2yxl_A	450	PH0851 protein, 450AA long hypothetical FMU protei	95.87
2cpw_A	64	CBL-interacting protein STS-1 variant; ubiquitin a	95.87
3fut_A	271	Dimethyladenosine transferase; methyltransferase,	95.86
1wiv_A	73	UBP14, ubiquitin-specific protease 14; ubiquitin a	95.85
3tqs_A	255	Ribosomal RNA small subunit methyltransferase A; p	95.83
3m70_A	286	Tellurite resistance protein TEHB homolog; structu	95.81
1wji_A	63	Tudor domain containing protein 3; UBA domain, str	95.8
2ih2_A	421	Modification methylase TAQI; DNA, DNA methyltransf	95.78
1veg_A	83	NEDD8 ultimate buster-1; ubiquitin associated doma	95.76
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	95.75
2yxd_A	183	Probable cobalt-precorrin-6Y C(15)-methyltransfer	95.74
3ldg_A	384	Putative uncharacterized protein SMU.472; YPSC, me	95.72
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	95.72
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	95.72
3q87_B	170	N6 adenine specific DNA methylase; SAM-methyltrans	95.67
1wiv_A	73	UBP14, ubiquitin-specific protease 14; ubiquitin a	95.66
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	95.66
1whc_A	64	RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain	95.64
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	95.62
1sqg_A	429	SUN protein, FMU protein; rossmann-fold, mixed bet	95.6
3ihp_A	854	Ubiquitin carboxyl-terminal hydrolase 5; hydrolase	95.59
2knz_A	53	Ubiquilin-4; cytoplasm, endoplasmic reticulum, nuc	95.53
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	95.52
1yzh_A	214	TRNA (guanine-N(7)-)-methyltransferase; alpha-beta	95.49
1z96_A	40	DNA-damage, UBA-domain protein MUD1; ubiquitin, th	95.46
2knz_A	53	Ubiquilin-4; cytoplasm, endoplasmic reticulum, nuc	95.46
2dag_A	74	Ubiquitin carboxyl-terminal hydrolase 5; isopeptid	95.45
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	95.44
2qm3_A	373	Predicted methyltransferase; putative methyltransf	95.44
4ae4_A	118	Ubiquitin-associated protein 1; protein transport,	95.42
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	95.41
1qam_A	244	ERMC' methyltransferase; rRNA methyltransferase ER	95.39
2cpw_A	64	CBL-interacting protein STS-1 variant; ubiquitin a	95.36
2jy5_A	52	Ubiquilin-1; UBA, alternative splicing, cytoplasm,	95.33
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	95.29
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	95.24
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	95.23
3pfg_A	263	N-methyltransferase; N,N-dimethyltransferase, SAM	95.22
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	95.19
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	95.16
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	95.16
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	95.15
2crn_A	64	Ubash3A protein; compact three-helix bundle, struc	95.13
1m6y_A	301	S-adenosyl-methyltransferase MRAW; SAM-dependent m	95.13
2dai_A	83	Ubadc1, ubiquitin associated domain containing 1;	95.08
3s1s_A	878	Restriction endonuclease bpusi; PD--(D/E)XK cataly	95.06
3f4k_A	257	Putative methyltransferase; structural genomics, P	95.02
1dv0_A	47	DNA repair protein HHR23A; helical bundle, DNA bin	95.0
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	95.0
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	94.92
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	94.88
2oyr_A	258	UPF0341 protein YHIQ; alpha-beta protein, structur	94.88
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	94.85
3dou_A	191	Ribosomal RNA large subunit methyltransferase J; c	94.84
3bgv_A	313	MRNA CAP guanine-N7 methyltransferase; alternative	94.84
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	94.77
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	94.7
4htf_A	285	S-adenosylmethionine-dependent methyltransferase;	94.67
2jy5_A	52	Ubiquilin-1; UBA, alternative splicing, cytoplasm,	94.66
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	94.66
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	94.64
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	94.6
2dai_A	83	Ubadc1, ubiquitin associated domain containing 1;	94.59
2r6z_A	258	UPF0341 protein in RSP 3' region; alpha-beta prote	94.57
1jsx_A	207	Glucose-inhibited division protein B; methyltransf	94.56
3lcc_A	235	Putative methyl chloride transferase; halide methy	94.55
1o9g_A	250	RRNA methyltransferase; antibiotic resistance, Se-	94.55
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	94.45
2dkl_A	85	Trinucleotide repeat containing 6C protein; TNRC6C	94.44
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	94.44
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	94.43
1xxl_A	239	YCGJ protein; structural genomics, protein structu	94.42
2zig_A	297	TTHA0409, putative modification methylase; methylt	94.36
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	94.34
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	94.33
3bzb_A	281	Uncharacterized protein; RED ALGA, protein structu	94.29
2okc_A	445	Type I restriction enzyme stysji M protein; NP_813	94.28
1pjz_A	203	Thiopurine S-methyltransferase; polymorphism, S-ad	94.27
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	94.22
3kr9_A	225	SAM-dependent methyltransferase; class I rossmann-	94.2
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	94.18
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	94.18
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	94.15
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	94.11
1xdz_A	240	Methyltransferase GIDB; MCSG, protein structure in	94.09
2ar0_A	541	M.ecoki, type I restriction enzyme ecoki M protein	94.08
2dkl_A	85	Trinucleotide repeat containing 6C protein; TNRC6C	94.08
1mjf_A	281	Spermidine synthase; spermidine synthetase, struct	94.07
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	94.06
3r0q_C	376	Probable protein arginine N-methyltransferase 4.2;	94.05
2ooa_A	52	E3 ubiquitin-protein ligase CBL-B; alpha-helical d	94.04
2p7i_A	250	Hypothetical protein; putative methyltransferase,	94.02
2gb4_A	252	Thiopurine S-methyltransferase; 18204406, thiopuri	94.02
2ex4_A	241	Adrenal gland protein AD-003; methyltransferase, s	93.99
1ri5_A	298	MRNA capping enzyme; methyltransferase, M7G, messe	93.95
3ftd_A	249	Dimethyladenosine transferase; KSGA, rossmann-like	93.91
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	93.89
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	93.89
3dxy_A	218	TRNA (guanine-N(7)-)-methyltransferase; rossmann f	93.87
3g89_A	249	Ribosomal RNA small subunit methyltransferase G; 1	93.86
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	93.86
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	93.83
3iv6_A	261	Putative Zn-dependent alcohol dehydrogenase; alpha	93.83
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	93.82
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	93.76
1inl_A	296	Spermidine synthase; beta-barrel, rossman fold, st	93.76
1g8a_A	227	Fibrillarin-like PRE-rRNA processing protein; rRNA	93.7
2dah_A	54	Ubiquilin-3; UBA domain, structural genomics, NPPS	93.63
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	93.61
3adn_A	294	Spermidine synthase; aminopropyltransferase, polya	93.61
3ntv_A	232	MW1564 protein; rossmann fold, putative methyltran	93.57
3hem_A	302	Cyclopropane-fatty-acyl-phospholipid synthase 2; p	93.56
2fca_A	213	TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac	93.48
2ooa_A	52	E3 ubiquitin-protein ligase CBL-B; alpha-helical d	93.48
3tr6_A	225	O-methyltransferase; cellular processes; HET: SAH;	93.46
1r18_A	227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	93.45
3lec_A	230	NADB-rossmann superfamily protein; PSI, MCSG, stru	93.4
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	93.4
1zx0_A	236	Guanidinoacetate N-methyltransferase; structural g	93.39
2bwb_A	46	Ubiquitin-like protein DSK2; UBA, signaling protei	93.37
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	93.35
2pjd_A	343	Ribosomal RNA small subunit methyltransferase C; g	93.33
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	93.33
1vek_A	84	UBP14, ubiquitin-specific protease 14, putative; U	93.3
1iy9_A	275	Spermidine synthase; rossmann fold, structural gen	93.28
1fbn_A	230	MJ fibrillarin homologue; MJ proteins, ribosomal R	93.25
2bwb_A	46	Ubiquitin-like protein DSK2; UBA, signaling protei	93.22
3bxo_A	239	N,N-dimethyltransferase; desosamine, sugar, carboh	93.21
3q7e_A	349	Protein arginine N-methyltransferase 1; HET: SAH;	93.15
2avn_A	260	Ubiquinone/menaquinone biosynthesis methyltransfe	93.12
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	93.12
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	93.05
1dv0_A	47	DNA repair protein HHR23A; helical bundle, DNA bin	93.01
3gnl_A	244	Uncharacterized protein, DUF633, LMOF2365_1472; st	92.96
2qfm_A	364	Spermine synthase; spermidine aminopropyltransfera	92.96
2y1w_A	348	Histone-arginine methyltransferase CARM1; histone	92.93
3lkd_A	542	Type I restriction-modification system methyltrans	92.89
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	92.89
2d9s_A	53	CBL E3 ubiquitin protein ligase; UBA domain, dimer	92.89
2ipx_A	233	RRNA 2'-O-methyltransferase fibrillarin; FBL, stru	92.84
2gs9_A	211	Hypothetical protein TT1324; methyl transferase, s	92.84
2d9s_A	53	CBL E3 ubiquitin protein ligase; UBA domain, dimer	92.81
2fyt_A	340	Protein arginine N-methyltransferase 3; structural	92.77
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	92.63
1wj7_A	104	Hypothetical protein (RSGI RUH-015); UBA domain, u	92.59
3u81_A	221	Catechol O-methyltransferase; neurotransmitter deg	92.55
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	92.54
4gek_A	261	TRNA (CMO5U34)-methyltransferase; structural genom	92.44
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	92.35
1wr1_B	58	Ubiquitin-like protein DSK2; UBA domain, UBA-ubiqu	92.33
1g60_A	260	Adenine-specific methyltransferase MBOIIA; structu	92.26
1g6q_1	328	HnRNP arginine N-methyltransferase; SAM-binding do	92.2
1wr1_B	58	Ubiquitin-like protein DSK2; UBA domain, UBA-ubiqu	92.16
2juj_A	56	E3 ubiquitin-protein ligase CBL; alpha helix, UBA	92.13
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	92.09
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	92.07
3ocj_A	305	Putative exported protein; structural genomics, PS	92.07
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	92.04
3khk_A	544	Type I restriction-modification system methylation	92.03
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	92.01
2fk8_A	318	Methoxy mycolic acid synthase 4; S-adenosylmethion	91.97
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	91.79
2lbc_A	126	Ubiquitin carboxyl-terminal hydrolase 13; tandem U	91.78
3cc8_A	230	Putative methyltransferase; structural genomics, j	91.73
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	91.64
1kpg_A	287	CFA synthase;, cyclopropane-fatty-acyl-phospholipi	91.59
1ej0_A	180	FTSJ; methyltransferase, adoMet, adenosyl methioni	91.54
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	91.49
1vej_A	74	Riken cDNA 4931431F19; UBA domain, three helix bun	91.48
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	91.43
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	91.42
4hc4_A	376	Protein arginine N-methyltransferase 6; HRMT1L6, S	91.33
3b3j_A	480	Histone-arginine methyltransferase CARM1; protein	91.27
1yub_A	245	Ermam, rRNA methyltransferase; MLS antibiotics; NM	91.21
2o07_A	304	Spermidine synthase; structural genomics, structur	91.17
3g07_A	292	7SK snRNA methylphosphate capping enzyme; structur	91.09
2b25_A	336	Hypothetical protein; structural genomics, methyl	90.99
3uzu_A	279	Ribosomal RNA small subunit methyltransferase A; s	90.87
2i7c_A	283	Spermidine synthase; transferase, structural genom	90.82
2cp8_A	54	NEXT to BRCA1 gene 1 protein; UBA domain, structur	90.81
1vej_A	74	Riken cDNA 4931431F19; UBA domain, three helix bun	90.66
2juj_A	56	E3 ubiquitin-protein ligase CBL; alpha helix, UBA	90.6
4hg2_A	257	Methyltransferase type 11; structural genomics, PS	90.47
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	90.41
2dah_A	54	Ubiquilin-3; UBA domain, structural genomics, NPPS	90.26
1uir_A	314	Polyamine aminopropyltransferase; spermidien synth	90.14
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	90.11
2pt6_A	321	Spermidine synthase; transferase, structural genom	90.1
3k9o_A	201	Ubiquitin-conjugating enzyme E2 K; E2-25K, complex	89.66
3bwc_A	304	Spermidine synthase; SAM, SGPP, structura genomics	89.65
2cos_A	54	Serine/threonine protein kinase LATS2; UBA domain,	89.45
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	89.44
2oo9_A	46	E3 ubiquitin-protein ligase CBL; alpha-helical dom	89.39
2oo9_A	46	E3 ubiquitin-protein ligase CBL; alpha-helical dom	89.27
4fzv_A	359	Putative methyltransferase NSUN4; mterf fold, meth	89.26
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	89.25
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	89.24
3i9f_A	170	Putative type 11 methyltransferase; structural gen	89.21
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	89.14
2nyu_A	196	Putative ribosomal RNA methyltransferase 2; SAM, s	89.12
1ixs_A	62	Holliday junction DNA helicase RUVA; heterodimeric	88.89
3c3y_A	237	Pfomt, O-methyltransferase; plant secondary metabo	88.65
2dna_A	67	Unnamed protein product; ubiquitin associated doma	88.61
3c3p_A	210	Methyltransferase; NP_951602.1, structural genomic	88.5
2b2c_A	314	Spermidine synthase; beta-alpha, transferase; 2.50	88.43
2i62_A	265	Nicotinamide N-methyltransferase; structural genom	88.1
2plw_A	201	Ribosomal RNA methyltransferase, putative; malaria	87.84
3fzg_A	200	16S rRNA methylase; methyltransferase, plasmid, tr	87.79
2oo3_A	283	Protein involved in catabolism of external DNA; st	87.67
1qyr_A	252	KSGA, high level kasugamycin resistance protein, S	87.49
2vdw_A	302	Vaccinia virus capping enzyme D1 subunit; nucleoti	87.39
1xj5_A	334	Spermidine synthase 1; structural genomics, protei	87.29
3ege_A	261	Putative methyltransferase from antibiotic biosyn	87.01
1vlm_A	219	SAM-dependent methyltransferase; possible histamin	86.96
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	86.89
2dna_A	67	Unnamed protein product; ubiquitin associated doma	86.65
3gjy_A	317	Spermidine synthase; APC62791, structural genomics	86.62
3uwp_A	438	Histone-lysine N-methyltransferase, H3 lysine-79;	86.06
2cmg_A	262	Spermidine synthase; transferase, putrescine amino	85.96
3mq2_A	218	16S rRNA methyltransferase; methyltranferase, ribo	85.88
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	85.58
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	85.58
2cwb_A	108	Chimera of immunoglobulin G binding protein G and	84.99
3r3h_A	242	O-methyltransferase, SAM-dependent; structural gen	84.96
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	84.92
2cwb_A	108	Chimera of immunoglobulin G binding protein G and	84.64
3ufb_A	530	Type I restriction-modification system methyltran	83.34
3ckk_A	235	TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-	83.0
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	82.96
3orh_A	236	Guanidinoacetate N-methyltransferase; structura ge	82.56
1boo_A	323	Protein (N-4 cytosine-specific methyltransferase P	81.11
1ixs_A	62	Holliday junction DNA helicase RUVA; heterodimeric	81.01
3id6_C	232	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	80.95
1u2z_A	433	Histone-lysine N-methyltransferase, H3 lysine-79 s	80.43
3hp7_A	291	Hemolysin, putative; structural genomics, APC64019	80.23

>3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A*

Probab=99.93  E-value=7.5e-27  Score=236.52  Aligned_cols=105  Identities=17%  Similarity=0.347  Sum_probs=93.2

Q ss_pred             CcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCccEE
Q 008149          444 LTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDFV  523 (576)
Q Consensus       444 l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~DLV  523 (576)
                      |+||||||||||+++||+++||  ++++|+|+|+.|++||+.+|.      ..++.+||++++.+++       +++|||
T Consensus         1 mkvidLFsG~GG~~~G~~~aG~--~~v~a~e~d~~a~~ty~~N~~------~~~~~~DI~~i~~~~~-------~~~D~l   65 (331)
T 3ubt_Y            1 MNLISLFSGAGGLDLGFQKAGF--RIICANEYDKSIWKTYESNHS------AKLIKGDISKISSDEF-------PKCDGI   65 (331)
T ss_dssp             CEEEEESCTTCHHHHHHHHTTC--EEEEEEECCTTTHHHHHHHCC------SEEEESCGGGCCGGGS-------CCCSEE
T ss_pred             CeEEEeCcCccHHHHHHHHCCC--EEEEEEeCCHHHHHHHHHHCC------CCcccCChhhCCHhhC-------CcccEE
Confidence            6899999999999999999998  569999999999999998753      2356899999998765       579999


Q ss_pred             EecCCCCCccccCCCCCCCCccccccCCCCCCCCcchHHHHHHHHHHhhccc
Q 008149          524 ICQNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVRSMK  575 (576)
Q Consensus       524 IGGpPCQ~FS~agr~~~~~~~~~aG~R~Gl~D~Rs~Lf~EyvRIV~~vK~~~  575 (576)
                      +||||||+||.+            |+++|++|+|+.||++|+|+|+++||..
T Consensus        66 ~ggpPCQ~fS~a------------g~~~g~~d~R~~L~~~~~r~i~~~~Pk~  105 (331)
T 3ubt_Y           66 IGGPPSQSWSEG------------GSLRGIDDPRGKLFYEYIRILKQKKPIF  105 (331)
T ss_dssp             ECCCCGGGTEET------------TEECCTTCGGGHHHHHHHHHHHHHCCSE
T ss_pred             EecCCCCCcCCC------------CCccCCCCchhHHHHHHHHHHhccCCeE
Confidence            999999999976            4567899999999999999999999853

>2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens}

Probab=99.92  E-value=3.4e-25  Score=226.17  Aligned_cols=116  Identities=22%  Similarity=0.371  Sum_probs=101.6

Q ss_pred             cCCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccC
Q 008149          439 MFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLG  518 (576)
Q Consensus       439 ~f~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g  518 (576)
                      ..+.+++||||||||||+++||+++||++++|+++|+|+.|+++|+.+|.     +..++.+||++++.+++.+    .+
T Consensus        12 ~~~~~~~vidLFaG~GG~~~g~~~aG~~~~~v~a~E~d~~a~~ty~~N~~-----~~~~~~~DI~~i~~~~i~~----~~   82 (295)
T 2qrv_A           12 EKRKPIRVLSLFDGIATGLLVLKDLGIQVDRYIASEVCEDSITVGMVRHQ-----GKIMYVGDVRSVTQKHIQE----WG   82 (295)
T ss_dssp             CCCCCEEEEEETCTTTHHHHHHHHTTBCEEEEEEECCCHHHHHHHHHHTT-----TCEEEECCGGGCCHHHHHH----TC
T ss_pred             ccCCCCEEEEeCcCccHHHHHHHHCCCccceEEEEECCHHHHHHHHHhCC-----CCceeCCChHHccHHHhcc----cC
Confidence            35678999999999999999999999988779999999999999987653     4446789999999988764    36


Q ss_pred             CccEEEecCCCCCccccCCCCCCCCccccccCCCCCCCCcchHHHHHHHHHHhhcc
Q 008149          519 SIDFVICQNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVRSM  574 (576)
Q Consensus       519 ~~DLVIGGpPCQ~FS~agr~~~~~~~~~aG~R~Gl~D~Rs~Lf~EyvRIV~~vK~~  574 (576)
                      ++|||+||||||+||.+|+           +|.|++|+|+.||++|+|+|+++||.
T Consensus        83 ~~Dll~ggpPCQ~fS~ag~-----------~r~g~~d~r~~L~~~~~rii~~~~P~  127 (295)
T 2qrv_A           83 PFDLVIGGSPCNDLSIVNP-----------ARKGLYEGTGRLFFEFYRLLHDARPK  127 (295)
T ss_dssp             CCSEEEECCCCGGGBTTCT-----------TCCTTTSTTTTHHHHHHHHHHHHSCC
T ss_pred             CcCEEEecCCCccccccCc-----------cccccccccchhHHHHHHHHHHhCcc
Confidence            8999999999999998753           45688999999999999999999985

>4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda}

Probab=99.90  E-value=4.4e-24  Score=221.07  Aligned_cols=110  Identities=14%  Similarity=0.233  Sum_probs=97.2

Q ss_pred             CCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCccE
Q 008149          443 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDF  522 (576)
Q Consensus       443 ~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~DL  522 (576)
                      +++|+||||||||+++||+++|+..++|+++|+|+.|+++|+.||..     ..+..+||++++.+++..     .++||
T Consensus         3 ~~~~idLFaG~GG~~~G~~~aG~~~~~v~a~e~d~~a~~ty~~N~~~-----~~~~~~DI~~~~~~~~~~-----~~~D~   72 (333)
T 4h0n_A            3 SHKILELYSGIGGMHCAWKESGLDGEIVAAVDINTVANSVYKHNFPE-----TNLLNRNIQQLTPQVIKK-----WNVDT   72 (333)
T ss_dssp             CEEEEEETCTTTHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCTT-----SCEECCCGGGCCHHHHHH-----TTCCE
T ss_pred             CCEEEEECcCccHHHHHHHHcCCCceEEEEEeCCHHHHHHHHHhCCC-----CceeccccccCCHHHhcc-----CCCCE
Confidence            57899999999999999999999888999999999999999987643     335679999999988764     37999


Q ss_pred             EEecCCCCCccccCCCCCCCCccccccCCCCCCCCcchHHHHHHHHHHhh-cc
Q 008149          523 VICQNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVR-SM  574 (576)
Q Consensus       523 VIGGpPCQ~FS~agr~~~~~~~~~aG~R~Gl~D~Rs~Lf~EyvRIV~~vK-~~  574 (576)
                      |+||||||+||.+|            ++.|++|+|+.||++|+|+|+++| |.
T Consensus        73 l~ggpPCQ~fS~ag------------~~~~~~d~r~~L~~~~~r~i~~~~~P~  113 (333)
T 4h0n_A           73 ILMSPPCQPFTRNG------------KYLDDNDPRTNSFLYLIGILDQLDNVD  113 (333)
T ss_dssp             EEECCCCCCSEETT------------EECCTTCTTSCCHHHHHHHGGGCTTCC
T ss_pred             EEecCCCcchhhhh------------hccCCcCcccccHHHHHHHHHHhcCCC
Confidence            99999999999764            456789999999999999999997 74

>3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica}

Probab=99.90  E-value=3.3e-24  Score=221.60  Aligned_cols=117  Identities=18%  Similarity=0.320  Sum_probs=98.1

Q ss_pred             cccccCCCCCcccccCCCCChhHHHHHHcCCceeeE-EEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHh
Q 008149          435 VLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGV-ISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESL  513 (576)
Q Consensus       435 vLK~~f~~~l~VLsLFSGiGG~slGL~~aGi~~k~v-vavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l  513 (576)
                      +|.++...+++||||||||||+++||+++||+++++ +++|+|+.|+++|+.||..+      ++.+||++++.+++.. 
T Consensus         2 ~l~~m~~~~~~vidLFaG~GG~~~G~~~aG~~~~~v~~a~e~d~~a~~ty~~N~~~~------~~~~DI~~~~~~~i~~-   74 (327)
T 3qv2_A            2 PLGSMQQKQVNVIEFFSGIGGLRSSYERSSININATFIPFDINEIANKIYSKNFKEE------VQVKNLDSISIKQIES-   74 (327)
T ss_dssp             ------CCCEEEEEETCTTTHHHHHHHHSSCCCCEEEEEECCCHHHHHHHHHHHCCC------CBCCCTTTCCHHHHHH-
T ss_pred             CCccccCCCCEEEEECCChhHHHHHHHHcCCCceEEEEEEECCHHHHHHHHHHCCCC------cccCChhhcCHHHhcc-
Confidence            456677778999999999999999999999877889 99999999999999887432      5679999999988764 


Q ss_pred             hhccCCccEEEecCCCCCc--cccCCCCCCCCccccccCCCCCCCCcchHHHHHH-HHHHh--hcc
Q 008149          514 IHKLGSIDFVICQNSVPQI--PNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVR-VVQRV--RSM  574 (576)
Q Consensus       514 ~~~~g~~DLVIGGpPCQ~F--S~agr~~~~~~~~~aG~R~Gl~D~Rs~Lf~EyvR-IV~~v--K~~  574 (576)
                          .++|+|+||||||+|  |.+            |+++|++|+|+.||++|+| +|+++  ||.
T Consensus        75 ----~~~Dil~ggpPCQ~fs~S~a------------g~~~~~~d~r~~L~~~~~r~~i~~~~~~P~  124 (327)
T 3qv2_A           75 ----LNCNTWFMSPPCQPYNNSIM------------SKHKDINDPRAKSVLHLYRDILPYLINKPK  124 (327)
T ss_dssp             ----TCCCEEEECCCCTTCSHHHH------------TTTCTTTCGGGHHHHHHHHTTGGGCSSCCS
T ss_pred             ----CCCCEEEecCCccCcccccC------------CCCCCCccccchhHHHHHHHHHHHhccCCC
Confidence                279999999999999  755            4567889999999999999 99998  664

>3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A

Probab=99.89  E-value=5.4e-24  Score=230.48  Aligned_cols=125  Identities=17%  Similarity=0.262  Sum_probs=88.7

Q ss_pred             CCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhh--------H-HHh
Q 008149          443 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKK--------F-ESL  513 (576)
Q Consensus       443 ~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~--------I-e~l  513 (576)
                      .++||||||||||+++||+++|+  ++|+++|+|+.|+++|+.||..  .++..++.+||++++...        + ..+
T Consensus        88 ~~~viDLFaG~GGlslG~~~aG~--~~v~avE~d~~A~~ty~~N~~~--~p~~~~~~~DI~~i~~~~~~~~~~~~~~~~i  163 (482)
T 3me5_A           88 AFRFIDLFAGIGGIRRGFESIGG--QCVFTSEWNKHAVRTYKANHYC--DPATHHFNEDIRDITLSHQEGVSDEAAAEHI  163 (482)
T ss_dssp             SEEEEEESCTTSHHHHHHHTTTE--EEEEEECCCHHHHHHHHHHSCC--CTTTCEEESCTHHHHCTTCTTSCHHHHHHHH
T ss_pred             cceEEEecCCccHHHHHHHHCCC--EEEEEEeCCHHHHHHHHHhccc--CCCcceeccchhhhhhccccccchhhHHhhh
Confidence            58999999999999999999998  5799999999999999988732  234456679999987432        1 111


Q ss_pred             hhccCCccEEEecCCCCCccccCCCCCCCCccccccCCCCC-CCCcchHHHHHHHHHHhhccc
Q 008149          514 IHKLGSIDFVICQNSVPQIPNSKQISNSKDPKMAAESDNLP-DFDFSLYYEFVRVVQRVRSMK  575 (576)
Q Consensus       514 ~~~~g~~DLVIGGpPCQ~FS~agr~~~~~~~~~aG~R~Gl~-D~Rs~Lf~EyvRIV~~vK~~~  575 (576)
                      ....+++|||+||||||+||.+|+..+.    -.|.+.|+. |+|+.||++|+|+|+.+||.+
T Consensus       164 ~~~~~~~Dvl~gGpPCQ~FS~AG~~k~~----~~g~~~G~~~D~R~~Lf~e~~riI~~~rPk~  222 (482)
T 3me5_A          164 RQHIPEHDVLLAGFPCQPFSLAGVSKKN----SLGRAHGFACDTQGTLFFDVVRIIDARRPAM  222 (482)
T ss_dssp             HHHSCCCSEEEEECCCCCC----------------------CTTTTSHHHHHHHHHHHHCCSE
T ss_pred             hhcCCCCCEEEecCCCcchhhhCccccc----ccccccccccCccccHHHHHHHHHHHcCCcE
Confidence            2345789999999999999999854211    013345775 899999999999999999853

>3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157}

Probab=99.88  E-value=2.8e-23  Score=218.13  Aligned_cols=113  Identities=20%  Similarity=0.302  Sum_probs=92.5

Q ss_pred             CCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCccE
Q 008149          443 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDF  522 (576)
Q Consensus       443 ~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~DL  522 (576)
                      .++||||||||||+++||+++|+  ++|++||+|+.|+++|+.||.     ...++.+||++++.+++.......+++||
T Consensus         2 ~~~vidLFsG~GGlslG~~~aG~--~~v~avE~d~~a~~t~~~N~~-----~~~~~~~DI~~~~~~~~~~~~~~~~~~D~   74 (376)
T 3g7u_A            2 SLNVIDLFSGVGGLSLGAARAGF--DVKMAVEIDQHAINTHAINFP-----RSLHVQEDVSLLNAEIIKGFFKNDMPIDG   74 (376)
T ss_dssp             CCEEEEETCTTSHHHHHHHHHTC--EEEEEECSCHHHHHHHHHHCT-----TSEEECCCGGGCCHHHHHHHHCSCCCCCE
T ss_pred             CCeEEEEccCcCHHHHHHHHCCC--cEEEEEeCCHHHHHHHHHhCC-----CCceEecChhhcCHHHHHhhcccCCCeeE
Confidence            48999999999999999999998  569999999999999998754     34467899999998887543223468999


Q ss_pred             EEecCCCCCccccCCCCCCCCccccccCCCCCCCCcchHHHHHHHHHHhhccc
Q 008149          523 VICQNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVRSMK  575 (576)
Q Consensus       523 VIGGpPCQ~FS~agr~~~~~~~~~aG~R~Gl~D~Rs~Lf~EyvRIV~~vK~~~  575 (576)
                      |+||||||+||.+|+            | |.+|+|+.||++|+|+|+++||.+
T Consensus        75 i~ggpPCQ~fS~ag~------------~-~~~d~r~~L~~~~~~~v~~~~P~~  114 (376)
T 3g7u_A           75 IIGGPPCQGFSSIGK------------G-NPDDSRNQLYMHFYRLVSELQPLF  114 (376)
T ss_dssp             EEECCCCCTTC--------------------CHHHHHHHHHHHHHHHHHCCSE
T ss_pred             EEecCCCCCcccccC------------C-CCCCchHHHHHHHHHHHHHhCCCE
Confidence            999999999998743            3 678999999999999999999863

>2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ...

Probab=99.88  E-value=6.5e-23  Score=211.60  Aligned_cols=105  Identities=19%  Similarity=0.326  Sum_probs=92.3

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 008149          442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  521 (576)
Q Consensus       442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~D  521 (576)
                      .+++||||||||||+++||+++|+  ++|+++|+|+.|+++|+.+|...      . .+||++++.+.+       +++|
T Consensus        10 ~~~~~~dLFaG~Gg~~~g~~~aG~--~~v~~~e~d~~a~~t~~~N~~~~------~-~~Di~~~~~~~~-------~~~D   73 (327)
T 2c7p_A           10 TGLRFIDLFAGLGGFRLALESCGA--ECVYSNEWDKYAQEVYEMNFGEK------P-EGDITQVNEKTI-------PDHD   73 (327)
T ss_dssp             TTCEEEEETCTTTHHHHHHHHTTC--EEEEEECCCHHHHHHHHHHHSCC------C-BSCGGGSCGGGS-------CCCS
T ss_pred             CCCcEEEECCCcCHHHHHHHHCCC--eEEEEEeCCHHHHHHHHHHcCCC------C-cCCHHHcCHhhC-------CCCC
Confidence            458999999999999999999998  56999999999999999987533      1 689999987654       4799


Q ss_pred             EEEecCCCCCccccCCCCCCCCccccccCCCCCCCCcchHHHHHHHHHHhhcc
Q 008149          522 FVICQNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVRSM  574 (576)
Q Consensus       522 LVIGGpPCQ~FS~agr~~~~~~~~~aG~R~Gl~D~Rs~Lf~EyvRIV~~vK~~  574 (576)
                      ||+||||||+||.+|            ++.|++|+|+.||++|+|+|+++||.
T Consensus        74 ~l~~gpPCQ~fS~ag------------~~~g~~d~r~~L~~~~~r~i~~~~P~  114 (327)
T 2c7p_A           74 ILCAGFPCQAFSISG------------KQKGFEDSRGTLFFDIARIVREKKPK  114 (327)
T ss_dssp             EEEEECCCTTTCTTS------------CCCGGGSTTSCHHHHHHHHHHHHCCS
T ss_pred             EEEECCCCCCcchhc------------ccCCCcchhhHHHHHHHHHHHhccCc
Confidence            999999999999764            45678899999999999999999985

>4ft4_B DNA (cytosine-5)-methyltransferase 1; chromodomain, BAH domain, DNA methyltransferase domain, H3K9 binding, methylation, transferase; HET: DNA MLY SAH; 2.70A {Zea mays} PDB: 4ft2_A* 4fsx_A*

Probab=99.87  E-value=2.5e-23  Score=234.65  Aligned_cols=122  Identities=17%  Similarity=0.170  Sum_probs=95.8

Q ss_pred             CCCCcccccCCCCChhHHHHHHcCC----ceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHH----
Q 008149          441 PGGLTMLSVFSGIGGAEVTLHRLGI----KLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFES----  512 (576)
Q Consensus       441 ~~~l~VLsLFSGiGG~slGL~~aGi----~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~----  512 (576)
                      ...+||||||||||||++||+++|.    .+++++|||+|+.|++||+.||     +.+.+.+.||.++....++.    
T Consensus       210 ~k~ltvIDLFAG~GGls~Gfe~AG~~~~~~f~vv~AvE~d~~A~~Ty~~Nh-----p~~~~~~~di~~i~~~~~~~~~~~  284 (784)
T 4ft4_B          210 TRTATLLDLYSGCGGMSTGLCLGAALSGLKLETRWAVDFNSFACQSLKYNH-----PQTEVRNEKADEFLALLKEWAVLC  284 (784)
T ss_dssp             CEEEEEEEETCTTSHHHHHHHHHHHHHTEEEEEEEEEESCHHHHHHHHHHC-----TTSEEEESCHHHHHHHHHHHHHHH
T ss_pred             CCCCeEEEeCcCccHHHHHHHHhCcccCCceeEEEEEeCCHHHHHHHHHHC-----CCCceecCcHHHhhhhhhhccccc
Confidence            3569999999999999999999982    2478999999999999998764     44556778887664432221    


Q ss_pred             --------------------------------------------------------------------------------
Q 008149          513 --------------------------------------------------------------------------------  512 (576)
Q Consensus       513 --------------------------------------------------------------------------------  512 (576)
                                                                                                      
T Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~i~~~  364 (784)
T 4ft4_B          285 KKYVQDVDSNLASSEDQADEDSPLDKDEFVVEKLVGICYGGSDRENGIYFKVQWEGYGPEEDTWEPIDNLSDCPQKIREF  364 (784)
T ss_dssp             HHTC-----------------------CCCEEEEEEEEESCSSSCSSEEEEEEETTCCTTSCEEEESGGGTTCHHHHHHH
T ss_pred             ccccccccccccccccccccccccccccchhhhhcccccccccccccccchhhhcccccccccccccccccccchhcccc
Confidence                                                                                            


Q ss_pred             --------hhhccCCccEEEecCCCCCccccCCCCCCCCccccccCCCCCCCCcchHHHHHHHHHHhhccc
Q 008149          513 --------LIHKLGSIDFVICQNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVRSMK  575 (576)
Q Consensus       513 --------l~~~~g~~DLVIGGpPCQ~FS~agr~~~~~~~~~aG~R~Gl~D~Rs~Lf~EyvRIV~~vK~~~  575 (576)
                              .....|++|||+||||||+||.+|+..        |...+++|+|+.||++|+|+|+++||..
T Consensus       365 ~~~~~~~~~~~~~G~VDvl~GGpPCQ~FS~aG~~k--------g~~~~~~D~R~~L~~~~~riv~~~rPk~  427 (784)
T 4ft4_B          365 VQEGHKRKILPLPGDVDVICGGPPCQGISGFNRYR--------NRDEPLKDEKNKQMVTFMDIVAYLKPKY  427 (784)
T ss_dssp             HHHHHHHTSSCCTTSCSEEEECCCCCSSSGGGGGS--------CTTSTTTSTTCHHHHHHHHHHHHHCCSE
T ss_pred             ccccchhhccCCCCCeEEEEecCCCcchhhhhccc--------CcCccccCchhHHHHHHHHHHHHHCCCE
Confidence                    011236899999999999999987652        2345688999999999999999999853

>1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26

Probab=99.87  E-value=6.9e-23  Score=212.00  Aligned_cols=110  Identities=16%  Similarity=0.327  Sum_probs=80.7

Q ss_pred             CCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCccE
Q 008149          443 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDF  522 (576)
Q Consensus       443 ~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~DL  522 (576)
                      +++||||||||||+++||+++|+++++|+++|+|+.|+++|+.+|..     ..++.+||++++.+.+..     ..+|+
T Consensus         2 ~~~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~E~d~~a~~~~~~N~~~-----~~~~~~Di~~~~~~~~~~-----~~~D~   71 (343)
T 1g55_A            2 PLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFPH-----TQLLAKTIEGITLEEFDR-----LSFDM   71 (343)
T ss_dssp             CEEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCTT-----SCEECSCGGGCCHHHHHH-----HCCSE
T ss_pred             CCeEEEeCcCccHHHHHHHHCCCCceEEEEEeCCHHHHHHHHHhccc-----cccccCCHHHccHhHcCc-----CCcCE
Confidence            47899999999999999999998778999999999999999987643     235679999999877653     26999


Q ss_pred             EEecCCCCCccccCCCCCCCCccccccCCCCCCCCcchHHHHHHHHHHhh--cc
Q 008149          523 VICQNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVR--SM  574 (576)
Q Consensus       523 VIGGpPCQ~FS~agr~~~~~~~~~aG~R~Gl~D~Rs~Lf~EyvRIV~~vK--~~  574 (576)
                      |+||||||+||.+|            ++.|++|+|+.||++|+|+|++++  |.
T Consensus        72 l~~gpPCq~fS~ag------------~~~g~~d~r~~l~~~~~~~i~~~~~~P~  113 (343)
T 1g55_A           72 ILMSPPCQPFTRIG------------RQGDMTDSRTNSFLHILDILPRLQKLPK  113 (343)
T ss_dssp             EEECCC------------------------------CHHHHHHHHGGGCSSCCS
T ss_pred             EEEcCCCcchhhcC------------CcCCccCccchHHHHHHHHHHHhcCCCC
Confidence            99999999999764            456789999999999999999998  64

>4dkj_A Cytosine-specific methyltransferase; CG-specificity, DNA intercalation, CPG sequence, cytosine C5 methylation; HET: DNA C37 5CM SAH; 2.15A {Mycoplasma penetrans}

Probab=99.85  E-value=3.2e-22  Score=212.38  Aligned_cols=110  Identities=13%  Similarity=0.125  Sum_probs=89.9

Q ss_pred             CCcccccCCCCChhHHHHHHcCCceee----EEEeeCCHHHHHHHHHHhhhcCCC---------------C-Cc------
Q 008149          443 GLTMLSVFSGIGGAEVTLHRLGIKLKG----VISIETSETNRRILKRWWESSGQT---------------G-EL------  496 (576)
Q Consensus       443 ~l~VLsLFSGiGG~slGL~~aGi~~k~----vvavEid~~a~~t~k~~~~~tn~~---------------g-~l------  496 (576)
                      .++|+||||||||+++||+++|+++++    |++||+|+.|+++|+++|......               + ..      
T Consensus        10 ~lrvldLFsGiGG~~~Gl~~aG~~~~~~~~~v~avEid~~A~~ty~~n~~~~~~~~~~~~~~~l~~~s~d~k~~~~~~~i   89 (403)
T 4dkj_A           10 VIKVFEAFAGIGSQFKALKNIARSKNWEIQHSGMVEWFVDAIVSYVAIHSKNFNPKIERLDRDILSISNDSKMPISEYGI   89 (403)
T ss_dssp             EEEEEEETCTTCHHHHHHHHHHHHHTEEEEEEEEECCBHHHHHHHHHHHCSSCCCCCBCCCTTCCCCBSSSSSCCCHHHH
T ss_pred             cceEEEEecCcCHHHHHHHHhCCccccceeeEEEEecCHHHHHHHHHHcCCCcccchhhhhhhhhhcccccccccccccc
Confidence            589999999999999999999976666    999999999999999998643100               0 00      


Q ss_pred             -------------------cccccccccChhhHHHhhhccCCccEEEecCCCCCccccCCCCCCCCccccccCCCCCC--
Q 008149          497 -------------------VQIEDIQALTTKKFESLIHKLGSIDFVICQNSVPQIPNSKQISNSKDPKMAAESDNLPD--  555 (576)
Q Consensus       497 -------------------~~~~DI~~lt~~~Ie~l~~~~g~~DLVIGGpPCQ~FS~agr~~~~~~~~~aG~R~Gl~D--  555 (576)
                                         ...+||++++.++++      +.+|||+||||||+||.+|            +|.|++|  
T Consensus        90 ~~l~~~~l~~i~~~~~~~~~~~~DI~~i~~~~ip------~~vDll~ggpPCQ~fS~ag------------~~~g~~d~~  151 (403)
T 4dkj_A           90 KKINNTIKASYLNYAKKHFNNLFDIKKVNKDNFP------KNIDIFTYSFPCQDLSVQG------------LQKGIDKEL  151 (403)
T ss_dssp             HHHTTBHHHHHHHHHHHHSCBCCCGGGCCTTTSC------SSCSEEEECCCCTTTCTTS------------CCCCCCGGG
T ss_pred             ccccHHHHHHHHhhcccCCCcccchhhcCHhhCC------CCCcEEEEeCCCCCHHHhC------------CCCCCCccc
Confidence                               024888888876653      3589999999999999764            4567776  


Q ss_pred             -CCcchHHHHHHHHHH
Q 008149          556 -FDFSLYYEFVRVVQR  570 (576)
Q Consensus       556 -~Rs~Lf~EyvRIV~~  570 (576)
                       +|+.||++|+|+|++
T Consensus       152 ~~r~~L~~~~~rii~~  167 (403)
T 4dkj_A          152 NTRSGLLWEIERILEE  167 (403)
T ss_dssp             CCSGGGHHHHHHHHHH
T ss_pred             cccchhHHHHHHHHHH
Confidence             999999999999998

>3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A*

Probab=99.79  E-value=3.8e-20  Score=214.64  Aligned_cols=119  Identities=21%  Similarity=0.248  Sum_probs=92.3

Q ss_pred             CCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhh----HHHhh--
Q 008149          441 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKK----FESLI--  514 (576)
Q Consensus       441 ~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~----Ie~l~--  514 (576)
                      ...+++|||||||||+++||++|||. ++++|+|+|+.|+.+|+.||     ++..++.+||.++....    +....  
T Consensus       538 ~~~l~~iDLFaG~GGlslGl~~AG~~-~vv~avEid~~A~~ty~~N~-----p~~~~~~~DI~~l~~~~~~~di~~~~~~  611 (1002)
T 3swr_A          538 LPKLRTLDVFSGCGGLSEGFHQAGIS-DTLWAIEMWDPAAQAFRLNN-----PGSTVFTEDCNILLKLVMAGETTNSRGQ  611 (1002)
T ss_dssp             CCCEEEEEESCTTSHHHHHHHHHTSE-EEEEEECSSHHHHHHHHHHC-----TTSEEECSCHHHHHHHHHHTCSBCTTCC
T ss_pred             CCCCeEEEeccCccHHHHHHHHCCCC-ceEEEEECCHHHHHHHHHhC-----CCCccccccHHHHhhhccchhhhhhhhh
Confidence            45799999999999999999999982 57999999999999998765     34456678887764221    11110  


Q ss_pred             --hccCCccEEEecCCCCCccccCCCCCCCCccccccCCCCCCCCcchHHHHHHHHHHhhccc
Q 008149          515 --HKLGSIDFVICQNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVRSMK  575 (576)
Q Consensus       515 --~~~g~~DLVIGGpPCQ~FS~agr~~~~~~~~~aG~R~Gl~D~Rs~Lf~EyvRIV~~vK~~~  575 (576)
                        ...+++|||+||||||+||.+|+.          +..+..|+|+.||++|+|+|++++|..
T Consensus       612 ~lp~~~~vDll~GGpPCQ~FS~ag~~----------~~~~~~d~R~~L~~~~~riv~~~rPk~  664 (1002)
T 3swr_A          612 RLPQKGDVEMLCGGPPCQGFSGMNRF----------NSRTYSKFKNSLVVSFLSYCDYYRPRF  664 (1002)
T ss_dssp             BCCCTTTCSEEEECCCCTTCCSSSCC----------CHHHHHHHTTSHHHHHHHHHHHHCCSE
T ss_pred             hcccCCCeeEEEEcCCCcchhhhCCC----------CCCcccchhhHHHHHHHHHHHHhCCCE
Confidence              112589999999999999988753          112356899999999999999999853

>3av4_A DNA (cytosine-5)-methyltransferase 1; CXXC-type zinc finger/C5-methyltransferase family; HET: DNA; 2.75A {Mus musculus} PDB: 3av5_A* 3av6_A*

Probab=99.78  E-value=4.8e-20  Score=218.39  Aligned_cols=118  Identities=21%  Similarity=0.278  Sum_probs=91.0

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhH----HH----h
Q 008149          442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKF----ES----L  513 (576)
Q Consensus       442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~I----e~----l  513 (576)
                      ..+++|||||||||+++||++||+ .++++|+|+|+.|+++|+.+|.     +..++.+||.++....+    ..    .
T Consensus       850 ~~l~viDLFsG~GGlslGfe~AG~-~~vv~avEid~~A~~ty~~N~p-----~~~~~~~DI~~l~~~~~~gdi~~~~~~~  923 (1330)
T 3av4_A          850 PKLRTLDVFSGCGGLSEGFHQAGI-SETLWAIEMWDPAAQAFRLNNP-----GTTVFTEDCNVLLKLVMAGEVTNSLGQR  923 (1330)
T ss_dssp             CCEEEEEETCTTSHHHHHHHHTTS-EEEEEEECCSHHHHHHHHHHCT-----TSEEECSCHHHHHHHHTTTCSBCSSCCB
T ss_pred             CCceEEecccCccHHHHHHHHCCC-CceEEEEECCHHHHHHHHHhCC-----CCcEeeccHHHHhHhhhccchhhhhhhh
Confidence            468999999999999999999998 3679999999999999988653     33455677776542211    00    0


Q ss_pred             hhccCCccEEEecCCCCCccccCCCCCCCCccccccCCCCCCCCcchHHHHHHHHHHhhccc
Q 008149          514 IHKLGSIDFVICQNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVRSMK  575 (576)
Q Consensus       514 ~~~~g~~DLVIGGpPCQ~FS~agr~~~~~~~~~aG~R~Gl~D~Rs~Lf~EyvRIV~~vK~~~  575 (576)
                      +...+++|||+||||||+||.+|+.          +..+.+|+|+.||++|+|+|+++||..
T Consensus       924 lp~~~~vDvl~GGpPCQ~FS~agr~----------~~~~~~d~R~~L~~~~lriv~~~rPk~  975 (1330)
T 3av4_A          924 LPQKGDVEMLCGGPPCQGFSGMNRF----------NSRTYSKFKNSLVVSFLSYCDYYRPRF  975 (1330)
T ss_dssp             CCCTTTCSEEEECCCCTTTCSSSCC----------CHHHHHHHHHSHHHHHHHHHHHHCCSE
T ss_pred             ccccCccceEEecCCCccccccccc----------ccccccchhhHHHHHHHHHHHHhcCcE
Confidence            0112579999999999999988753          112356899999999999999999853

>2qrv_B DNA (cytosine-5)-methyltransferase 3-like; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens}

Probab=99.77  E-value=1.4e-19  Score=179.45  Aligned_cols=86  Identities=22%  Similarity=0.300  Sum_probs=70.7

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 008149          442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  521 (576)
Q Consensus       442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~D  521 (576)
                      .+++||||||||||   ||+++||++                +     .|+++..++.+||++|+.++|++    ++++|
T Consensus        32 ~~~~vidLFaGig~---Gl~~aGf~~----------------~-----~N~~~~~~~~~DI~~i~~~~i~~----~~~~D   83 (230)
T 2qrv_B           32 QPVRVLSLFEDIKK---ELTSLGFLE----------------S-----GSDPGQLKHVVDVTDTVRKDVEE----WGPFD   83 (230)
T ss_dssp             CCCCEEEESSCCTT---TTTTTTSCC--------------------------CCEEEESCCTTCCHHHHHH----TCCCS
T ss_pred             CCceEEEeccChhH---HHHHCCCch----------------h-----hcCCCCcEecCChhhCCHhHhcc----cCCCC
Confidence            46899999999998   899999963                1     23455556789999999988764    47899


Q ss_pred             EEEecCCCCCccccCCCCCCCCccccccCCCCCCCCcchHHHHHHHHHHhhcc
Q 008149          522 FVICQNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVRSM  574 (576)
Q Consensus       522 LVIGGpPCQ~FS~agr~~~~~~~~~aG~R~Gl~D~Rs~Lf~EyvRIV~~vK~~  574 (576)
                      ||+||||||+||.+                   ++|++||+||+|||+++||.
T Consensus        84 lliGG~PCQ~FS~a-------------------g~rg~Lf~ef~Riv~~~rPk  117 (230)
T 2qrv_B           84 LVYGATPPLGHTCD-------------------RPPSWYLFQFHRLLQYARPK  117 (230)
T ss_dssp             EEEEECCCTTTSSC-------------------SCTHHHHHHHHHHHHHHCCC
T ss_pred             EEEECCCCCccccc-------------------CCCchHHHHHHHHHHHHCcC
Confidence            99999999999965                   35889999999999999985

>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*

Probab=99.73  E-value=1.7e-18  Score=182.30  Aligned_cols=87  Identities=23%  Similarity=0.302  Sum_probs=73.8

Q ss_pred             CCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 008149          441 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI  520 (576)
Q Consensus       441 ~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~  520 (576)
                      ..+++||||||||||   ||++|||++                     ..|+++..++.+||++|+.++|++    ++++
T Consensus       187 ~~~ikvidLFaGiGg---Gl~~aGf~v---------------------~~N~~~~~~~~~DI~~i~~~~i~~----~~~~  238 (386)
T 2pv0_B          187 RQPVRVLSLFEDIKK---ELTSLGFLE---------------------SGSDPGQLKHVVDVTDTVRKDVEE----WGPF  238 (386)
T ss_dssp             CCCCCEEEESSCCHH---HHHHTTSSC---------------------SSCCSCSEEEESCCTTCCHHHHHH----SCCC
T ss_pred             hcCceeeEEeccCCh---hHhhcCccH---------------------HHcCCCCcEEeCChhhCCHhHhcc----cCCC
Confidence            456999999999997   999999964                     135666666789999999988764    4789


Q ss_pred             cEEEecCCCCCccccCCCCCCCCccccccCCCCCCCCcchHHHHHHHHHHhhcc
Q 008149          521 DFVICQNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVRSM  574 (576)
Q Consensus       521 DLVIGGpPCQ~FS~agr~~~~~~~~~aG~R~Gl~D~Rs~Lf~EyvRIV~~vK~~  574 (576)
                      |||+||||||+||.+                   |+|++||+||+|||+++||.
T Consensus       239 DlliGG~PCQ~FS~A-------------------~~Rg~Lf~ef~Riv~~~rPk  273 (386)
T 2pv0_B          239 DLVYGATPPLGHTCD-------------------RPPSWYLFQFHRLLQYARPK  273 (386)
T ss_dssp             SEEEEECCCTTTCSC-------------------SCTHHHHHHHHHHHHHHSCC
T ss_pred             CEEEECCCCCccccc-------------------CCcchHHHHHHHHHHHhCCC
Confidence            999999999999964                   36899999999999999985

>2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens}

Probab=99.57  E-value=5.5e-15  Score=150.92  Aligned_cols=160  Identities=20%  Similarity=0.313  Sum_probs=117.6

Q ss_pred             CC-ccccccccccchhhhHhhhhhhccCCceeecccccCcccccccccccCCCCCCCCCCC-CCCCcccccccCCCccCC
Q 008149          249 PP-YFFYGNVVDVSIDCWVKMSHFLYSLEPEFVNSQYFSALSRREGYLHNLPTTNRFHIPP-EPPMTIQDAIPHTKKWWP  326 (576)
Q Consensus       249 pp-fF~~eNV~~~~~~~w~~Is~fL~~i~Pe~vds~~fsaa~R~R~y~hNLP~~nR~~~~p-~~p~ti~d~lp~~~~~wp  326 (576)
                      +| ||++|||..+-...+.+|.++|. ..+.++||..|.||+|+|.||.++|...++...+ .+.+|++|+|...+.+  
T Consensus       132 ~P~~~l~ENV~gl~~~~~~~~~~~l~-~~~~vl~a~~~~PQ~R~R~~i~~~~~~~~p~~~~~~~~~tv~d~l~~~~~~--  208 (295)
T 2qrv_A          132 RPFFWLFENVVAMGVSDKRDISRFLE-SNPVMIDAKEVSAAHRARYFWGNLPGMNRPLASTVNDKLELQECLEHGRIA--  208 (295)
T ss_dssp             CCCEEEEEEESSBCHHHHHHHHHHHT-SCCCCEEGGGTSSBCCEEEEEECCTTSSSCCCCCSSCCCSGGGTSCTTCEE--
T ss_pred             CccEEEEEcCcchhhcCccHHHHHHh-cCcEEeecceECCccCcEEEEEEecCccCCCcccccCcccHHHHhcCCccc--
Confidence            44 78999999998887888999996 5999999999999999999999999876522111 1368999999865432  


Q ss_pred             CcCcCcccceeeccCcchhHHHHHHHHHHhhccCCCchhhhHHHHHhhcccceeeecccccCCCChhhHHHHhcCCCCCc
Q 008149          327 SWDTRKHLSCINSGTSGISQLCERFEKLLRDSRGVLSSQQQRDILHRSEKLNLVWVGAYKLGPVDPEHIELILGYPSNHT  406 (576)
Q Consensus       327 ~wd~r~klnci~t~~~~~~~l~~~i~~~~~~~~~~~~~~~q~~vl~~c~k~nlvW~g~~~~~ple~~E~E~i~GfP~~~T  406 (576)
                         ...++++|++.+..+.           ..++              +.+..  ..+++.+.|++.|+.||+|||++|+
T Consensus       209 ---~~~~~~~i~~~~~~~~-----------~g~~--------------~~~~~--~~~~~~R~lt~rE~arlqgFPd~~~  258 (295)
T 2qrv_A          209 ---KFSKVRTITTRSNSIK-----------QGKD--------------QHFPV--FMNEKEDILWCTEMERVFGFPVHYT  258 (295)
T ss_dssp             ---SSSSBC---------------------------------------CCSCE--EETTEEECCCHHHHHHHHTCCTTTT
T ss_pred             ---ccCccccccCCCceec-----------CCCC--------------CCccc--ccCCCcCCCCHHHHHHHcCCCHHHe
Confidence               2344555554321110           0000              01111  2356789999999999999999999


Q ss_pred             ccCCCChHHHHHHhhhhhccccchhhhccccccCC
Q 008149          407 QAAGNSLTARLESLRHCFQTDTLGYHLSVLKSMFP  441 (576)
Q Consensus       407 ~~~~~~~teR~k~Lg~sf~vdtv~~~lsvLK~~f~  441 (576)
                      -.++++.++++|.+||+..++.+.++...|++++.
T Consensus       259 ~~~~~s~~~~~~qiGNaVpv~~~~~i~~~i~~~l~  293 (295)
T 2qrv_A          259 DVSNMSRLARQRLLGRSWSVPVIRHLFAPLKEYFA  293 (295)
T ss_dssp             CCTTCCHHHHHHHHHTSCCHHHHHHHHGGGGGGSC
T ss_pred             eCCCcCHHHHhccEecCcCHHHHHHHHHHHHHHhc
Confidence            98889999999999999999999999988887663

>4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda}

Probab=99.48  E-value=7.3e-15  Score=152.15  Aligned_cols=177  Identities=14%  Similarity=0.159  Sum_probs=114.0

Q ss_pred             CCCccccccccccch-hhhHhhhhhh----ccCCceeeccccc-Cccccccccc----ccCCCC--------CCCCCCCC
Q 008149          248 QPPYFFYGNVVDVSI-DCWVKMSHFL----YSLEPEFVNSQYF-SALSRREGYL----HNLPTT--------NRFHIPPE  309 (576)
Q Consensus       248 ~ppfF~~eNV~~~~~-~~w~~Is~fL----~~i~Pe~vds~~f-saa~R~R~y~----hNLP~~--------nR~~~~p~  309 (576)
                      +|.||++|||..+-. ..|..|.+.|    |.++..++||..| .||+|+|.|+    ..++..        ..+|..+.
T Consensus       111 ~P~~~vlENV~gl~~~~~~~~i~~~l~~~GY~v~~~vl~a~~~GvPQ~R~R~fiva~r~~~~~~f~~~~~~~~~~P~~~~  190 (333)
T 4h0n_A          111 NVDYILMENVKGFENSTVRNLFIDKLKECNFIYQEFLLCPSTVGVPNSRLRYYCTARRNNLTWPFKRRDEIITRLPKDFG  190 (333)
T ss_dssp             TCCEEEEEECTTGGGSHHHHHHHHHHHHTTEEEEEEEECTTTTTCSCCCCEEEEEEEETTSCCCSCCCSSCBSSCSSCCC
T ss_pred             CCCEEEEecchhhhhhhHHHHHHHHHHhCCCeEEEEEecHHHcCCCccceEEEEEEEeCCCCCCCCcccchhhhCCCCcc
Confidence            399999999998864 3577777777    7788999999999 9999999997    222221        11122222


Q ss_pred             CCCcccccccC-----------CCccCCCcCcCcc--cc--eeeccCc------ch------hHHHHHHHHHHhhccCCC
Q 008149          310 PPMTIQDAIPH-----------TKKWWPSWDTRKH--LS--CINSGTS------GI------SQLCERFEKLLRDSRGVL  362 (576)
Q Consensus       310 ~p~ti~d~lp~-----------~~~~wp~wd~r~k--ln--ci~t~~~------~~------~~l~~~i~~~~~~~~~~~  362 (576)
                      .+.+|.|+|+.           +.+||..+|-.+.  .+  |.+..+.      ++      ....+++-+.+....+  
T Consensus       191 ~~~~l~d~Le~~~~~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~k~~~~~~~g~gs~~~~~~~~~~~~~~~~~~~~~~--  268 (333)
T 4h0n_A          191 VPHSLESIIEEDVDEKFLVPEKMLRCAKVFDICYKTSKRSCCFTKAYTHYADGTGSIFTDKPREVVQKCYAAAAQNEI--  268 (333)
T ss_dssp             SCCCSSTTCCSSCCGGGBCCHHHHTTGGGCCEECTTCSCCCCCCTTBTTBSSSSCCEECSSCHHHHHHHHHHGGGSCT--
T ss_pred             ccccHHHHhccCCcccccCCHHHHHHHHHhccCChhhhhhhhhccccceEEeccCceeccccccchhhhhcccccCCC--
Confidence            36889999952           1145555553221  11  1111110      00      0011122221111100  


Q ss_pred             chhhhHHHHHhhcccceeeecccccCCCChhhHHHHhcCCCCCcccCCCChHHHHHHhhhhhccccchhhhcccc
Q 008149          363 SSQQQRDILHRSEKLNLVWVGAYKLGPVDPEHIELILGYPSNHTQAAGNSLTARLESLRHCFQTDTLGYHLSVLK  437 (576)
Q Consensus       363 ~~~~q~~vl~~c~k~nlvW~g~~~~~ple~~E~E~i~GfP~~~T~~~~~~~teR~k~Lg~sf~vdtv~~~lsvLK  437 (576)
                      ..+.|           +.+..+.++++|+|.|++||+|||++||-..++|.++|||.+||+..|++++++.+.|.
T Consensus       269 G~~~~-----------~~~~~~~~~R~lt~~E~~rl~gfp~~~~~~~~~s~~~~y~~~GNsv~v~v~~~i~~~l~  332 (333)
T 4h0n_A          269 GGEKF-----------VELFKELKLRYFTPKEVLMIMCFPKSYNLPTNISMKQCYRLLGNSVNVKVISELLKILF  332 (333)
T ss_dssp             TCHHH-----------HHHHHTTTCBCCCHHHHHHHTTCCTTCCCCTTSCHHHHHHHHHTSCCHHHHHHHHHHHH
T ss_pred             Ccccc-----------eeeccCCCcCCCCHHHHHHhCCCCccccCCCCCCHHHHHHHhCCccCHHHHHHHHHHHh
Confidence            01111           12234678999999999999999999998778999999999999999999999987763

>3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica}

Probab=99.41  E-value=2.1e-14  Score=148.48  Aligned_cols=178  Identities=15%  Similarity=0.156  Sum_probs=118.2

Q ss_pred             CCCccccccccccch-hhhHhhhhhh----ccCCceeeccccc-Cccccccccc-ccCCCCCCCCCC--CCCCCcccccc
Q 008149          248 QPPYFFYGNVVDVSI-DCWVKMSHFL----YSLEPEFVNSQYF-SALSRREGYL-HNLPTTNRFHIP--PEPPMTIQDAI  318 (576)
Q Consensus       248 ~ppfF~~eNV~~~~~-~~w~~Is~fL----~~i~Pe~vds~~f-saa~R~R~y~-hNLP~~nR~~~~--p~~p~ti~d~l  318 (576)
                      +|.||++|||..+-. ..|..|.+.|    |.++..++||..| .||+|+|.|+ +.... -.+|-.  +.+..+|+|+|
T Consensus       122 ~P~~~~lENV~gl~~~~~~~~i~~~l~~~GY~v~~~vl~a~~yGvPQ~R~R~fivg~r~~-f~fP~~~~~~~~~~l~d~L  200 (327)
T 3qv2_A          122 KPKHIFIENVPLFKESLVFKEIYNILIKNQYYIKDIICSPIDIGIPNSRTRYYVMARLTP-FKNEIQLHQEKESMISNYL  200 (327)
T ss_dssp             CCSEEEEEECGGGGGSHHHHHHHHHHHHTTCEEEEEEECGGGGTCSBCCCEEEEEEESSC-CCSCCCCCCCSCCCGGGGC
T ss_pred             CCCEEEEEchhhhcChHHHHHHHHHHHhCCCEEEEEEEeHHHcCCCccceEEEEEEEeCC-CCCCCcccccccccHHHHh
Confidence            799999999998765 4677777777    6788999999999 9999999994 44333 122221  11358899999


Q ss_pred             cC--------CCccCCCcCcC--------cccceeeccCcchhHHHHHHHHHHhhccCCCchhhhHHHHHhhcccceeee
Q 008149          319 PH--------TKKWWPSWDTR--------KHLSCINSGTSGISQLCERFEKLLRDSRGVLSSQQQRDILHRSEKLNLVWV  382 (576)
Q Consensus       319 p~--------~~~~wp~wd~r--------~klnci~t~~~~~~~l~~~i~~~~~~~~~~~~~~~q~~vl~~c~k~nlvW~  382 (576)
                      +.        ..+||..|...        ++-.|+|..+   ++.       ....++.+....    -......++++.
T Consensus       201 e~~~~~~y~l~~~~~~~~~~~~di~~~~~~~~~~~t~~y---~~y-------~~~~gs~l~~~~----~~~~~~~~~~~~  266 (327)
T 3qv2_A          201 DNNVNESYSIPSDLILKKGMLFDIVGKDDKRTCCFTKSY---TKI-------VEGTGSIYCPIE----PHFIPVKKAEDL  266 (327)
T ss_dssp             CSSCCGGGBCCHHHHHHHGGGSCEEETTSSCBCCCCTTT---TTS-------STTSCCEEESSC----SSCCCCSSGGGG
T ss_pred             cccccccccCCHHHHHhhhcccccccccccccccccccc---eEE-------ecCCCceeeccc----ccccccCCceee
Confidence            72        22344333211        1112222211   000       001111110000    000112356677


Q ss_pred             cccccCCCChhhHHHHhcCCCCCccc-CCCChHHHHHHhhhhhccccchhhhccccccC
Q 008149          383 GAYKLGPVDPEHIELILGYPSNHTQA-AGNSLTARLESLRHCFQTDTLGYHLSVLKSMF  440 (576)
Q Consensus       383 g~~~~~ple~~E~E~i~GfP~~~T~~-~~~~~teR~k~Lg~sf~vdtv~~~lsvLK~~f  440 (576)
                      .+++++.|+|.|+.||+|||++|+-. .++|.+++||.+|||..++++.++...|++..
T Consensus       267 ~~~~~R~lt~~E~~rlqgfP~~~~~~~~~~s~~~~y~~~GNsv~v~v~~~i~~~l~~~l  325 (327)
T 3qv2_A          267 LNKNLRYFTPNEIKKIHGFSSNFTTQIDGLTDKQQYQCLGNSVSCFVIAQLMEYLFDDL  325 (327)
T ss_dssp             TTSCCBCCCHHHHHHHTTCCTTCCSCCTTCCHHHHHHHHHTSCCHHHHHHHHHHHTTTS
T ss_pred             cCCccccCcHHHHHHhCcCCHHHcCCcCCCCHHHHHHHccCccCHHHHHHHHHHHHHHh
Confidence            88999999999999999999999976 67999999999999999999999988887653

>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*

Probab=99.17  E-value=1.2e-11  Score=111.49  Aligned_cols=107  Identities=12%  Similarity=0.147  Sum_probs=75.8

Q ss_pred             hhhhHHHhcCCCChHHHHHHHHHhCCCCcHHHHHHHHHHhhhcccccccCCCCCCCCCCCCCCCchhhhhhhhHHHHHHH
Q 008149           17 IEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQISENFEKETDDAPHDNDGTNEDKSDETLYGTMEITLQLL   96 (576)
Q Consensus        17 s~~r~~li~MGFs~e~V~kAIqe~Ge~~~~~~Ile~Ll~~q~l~~~~~e~~ds~~~~~~~ne~~~~e~~~~~~~k~~~L~   96 (576)
                      .+...+|++||||.+.|.||++.+|. + +++++|+|++++.+...+.++.+.+..... .+. +...--..-+++..|.
T Consensus         9 ~~~v~~l~~MGFp~~~~~kAl~~~g~-~-~e~amewL~~h~~L~d~~~d~~~~e~~l~~-~~~-~~~~~~~~~~~v~~L~   84 (118)
T 4ae4_A            9 RQCVETVVNMGYSYECVLRAMKAAGA-N-IEQILDYLFAHGQLCEKGFDPLLVEEALEM-HQC-SEEKMMEFLQLMSKFK   84 (118)
T ss_dssp             HHHHHHHHHTTCCHHHHHHHHHHHCS-C-HHHHHHHHHHHHHHHHTTCCHHHHHHHHHH-CSS-CHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHCc-C-HHHHHHHHHHhchhcccCCChhhhHHHHHh-ccC-CccccccCHHHHHHHH
Confidence            45678999999999999999999998 7 999999999998886654322110000000 000 0000111234688999


Q ss_pred             hcCCCHHHHHHHHHHhCCCCChhhhhHhHhhcc
Q 008149           97 EMGFSENQVSLAIEKFGSKTPISELADKIFSGQ  129 (576)
Q Consensus        97 ~MGFseeEas~AI~r~G~da~i~eLvD~I~Aaq  129 (576)
                      .|||++++|..|+.+++.|  ++-=+|.+++..
T Consensus        85 eMGF~~~~a~~AL~~~~nd--~erAlewL~~~~  115 (118)
T 4ae4_A           85 EMGFELKDIKEVLLLHNND--QDNALEDLMARA  115 (118)
T ss_dssp             HTTCCHHHHHHHHHHTTTC--HHHHHHHHHHHC
T ss_pred             HcCCCHHHHHHHHHHcCCC--HHHHHHHHHHhc
Confidence            9999999999999999987  666777777654

>3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A*

Probab=98.94  E-value=9e-11  Score=118.67  Aligned_cols=192  Identities=17%  Similarity=0.179  Sum_probs=101.5

Q ss_pred             cCCCCccccccccccch----hhhHhhhhhh----ccCCceeeccccc-Cccccccccc----ccCCCCCCCCCCCCCCC
Q 008149          246 VAQPPYFFYGNVVDVSI----DCWVKMSHFL----YSLEPEFVNSQYF-SALSRREGYL----HNLPTTNRFHIPPEPPM  312 (576)
Q Consensus       246 ~~~ppfF~~eNV~~~~~----~~w~~Is~fL----~~i~Pe~vds~~f-saa~R~R~y~----hNLP~~nR~~~~p~~p~  312 (576)
                      ..+|.||++|||..+-.    ..+..|.+.|    |.+.+.++||.+| .||+|+|.|+    .+++..--+|.......
T Consensus       100 ~~~Pk~~~~ENV~gl~~~~~~~~~~~i~~~l~~~GY~v~~~vlna~~yGvPQ~R~Rvfivg~r~~~~~~~~~p~~~~~~~  179 (331)
T 3ubt_Y          100 QKKPIFFLAENVKGMMAQRHNKAVQEFIQEFDNAGYDVHIILLNANDYGVAQDRKRVFYIGFRKELNINYLPPIPHLIKP  179 (331)
T ss_dssp             HHCCSEEEEEECCGGGGCTTSHHHHHHHHHHHHHTEEEEEEEEEGGGTTCSBCCEEEEEEEEEGGGCCCCCCCCCCSCCC
T ss_pred             ccCCeEEEeeeecccccccccchhhhhhhhhccCCcEEEEEecccccCCCCcccceEEEEEEcCCCCcCCCCCCCcCCCC
Confidence            35899999999987743    3566666666    6799999999999 9999999997    33333322222112356


Q ss_pred             cccccccCCC-ccCCCcCcCcc--cceeecc----Cc--chhHHH-HHHHHH------HhhccCCCc-hhhhHHHHHhhc
Q 008149          313 TIQDAIPHTK-KWWPSWDTRKH--LSCINSG----TS--GISQLC-ERFEKL------LRDSRGVLS-SQQQRDILHRSE  375 (576)
Q Consensus       313 ti~d~lp~~~-~~wp~wd~r~k--lnci~t~----~~--~~~~l~-~~i~~~------~~~~~~~~~-~~~q~~vl~~c~  375 (576)
                      |+.|++.... .-+|.+++...  ..++...    ..  ...... .+.+..      +...+.... ......+...++
T Consensus       180 t~~d~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (331)
T 3ubt_Y          180 TFKDVIWDLKDNPIPALDKNKTNGNKCIYPNHEYFIGSYSTIFMSRNRVRQWNEPAFTVQASGRQCQLHPQAPVMLKVSK  259 (331)
T ss_dssp             CGGGTSGGGSSSCEECBGGGBCCGGGSSSTTCEECCSCCCTTGGGSCCBCCTTSCBCCCCSCSTTCCBCTTSCCCEEEET
T ss_pred             cHHHHhhhcccCCcccccccccccccccccchhhhcccccccccccccccccccccccccccCcccccccccceeeeecC
Confidence            7777762110 01111111000  0000000    00  000000 000000      000000000 000000000011


Q ss_pred             ccceee-ecccccCCCChhhHHHHhcCCCCCcccCCCChHHHHHHhhhhhccccchhhhccccc
Q 008149          376 KLNLVW-VGAYKLGPVDPEHIELILGYPSNHTQAAGNSLTARLESLRHCFQTDTLGYHLSVLKS  438 (576)
Q Consensus       376 k~nlvW-~g~~~~~ple~~E~E~i~GfP~~~T~~~~~~~teR~k~Lg~sf~vdtv~~~lsvLK~  438 (576)
                      ..+-.+ ..++..+.||+.|+.||+|||++|+= .+.+.++++|.+||+..+....++...++.
T Consensus       260 ~~~~~~~~~~~~~R~LT~rE~aRLQgFPd~f~f-~~~s~~~~ykqiGNAVpp~la~~I~~~I~~  322 (331)
T 3ubt_Y          260 NLNKFVEGKEHLYRRLTVRECARVQGFPDDFIF-HYESLNDGYKMIGNAVPVNLAYEIAKTIKS  322 (331)
T ss_dssp             TEEECCTTCGGGCCBCBHHHHHHHHTCCTTCCC-CCSBHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred             CCCcccCCCCCcCcCCCHHHHHHhCCCCCCCEe-CCCCHHHHhhhCccCccHHHHHHHHHHHHH
Confidence            111111 13456799999999999999999973 245899999999999998887777665543

>4dkj_A Cytosine-specific methyltransferase; CG-specificity, DNA intercalation, CPG sequence, cytosine C5 methylation; HET: DNA C37 5CM SAH; 2.15A {Mycoplasma penetrans}

Probab=98.92  E-value=2.6e-10  Score=121.23  Aligned_cols=185  Identities=13%  Similarity=0.153  Sum_probs=111.1

Q ss_pred             CCCCccccccccccchh----hhHhhhhhh----ccCCceeeccccc-Ccccccccccc------cCCCCCCC---CCCC
Q 008149          247 AQPPYFFYGNVVDVSID----CWVKMSHFL----YSLEPEFVNSQYF-SALSRREGYLH------NLPTTNRF---HIPP  308 (576)
Q Consensus       247 ~~ppfF~~eNV~~~~~~----~w~~Is~fL----~~i~Pe~vds~~f-saa~R~R~y~h------NLP~~nR~---~~~p  308 (576)
                      .+|.||++|||..+-..    .|..|.+.|    |.+.+.++||..| .||+|.|.|+=      ..|.....   .++.
T Consensus       176 ~~Pk~~l~ENV~gl~~~~~~~~~~~i~~~l~~~GY~v~~~vl~a~~~GvPQ~R~R~fiva~r~~f~fP~~~~~~~~~~~~  255 (403)
T 4dkj_A          176 EMPKYLLMENVKNLLSHKNKKNYNTWLKQLEKFGYKSKTYLLNSKNFDNCQNRERVFCLSIRDDYLEKTGFKFKELEKVK  255 (403)
T ss_dssp             GSCSEEEEEEEGGGGSHHHHHHHHHHHHHHHHTTEEEEEEEEEGGGTTCSBCCEEEEEEEEEHHHHHHHCCCCCCGGGCC
T ss_pred             cCCCEEEEecchhhhhhccchHHHHHHHHHHhCCCeEEEEEecHHHcCCCccceEEEEEEEcCCCCCCCccccccccccc
Confidence            68999999999998653    466676666    6689999999999 99999999962      12221111   1111


Q ss_pred             CCCCcccccccCC--CccC-------CCc-CcCcccceeec-cCcchhHHHHHHHHHHhhccC-CCchhhhHHHHHhhcc
Q 008149          309 EPPMTIQDAIPHT--KKWW-------PSW-DTRKHLSCINS-GTSGISQLCERFEKLLRDSRG-VLSSQQQRDILHRSEK  376 (576)
Q Consensus       309 ~~p~ti~d~lp~~--~~~w-------p~w-d~r~klnci~t-~~~~~~~l~~~i~~~~~~~~~-~~~~~~q~~vl~~c~k  376 (576)
                      .++.+|.|+|+..  .+|-       |.. .++.++.+..+ ......+  +  +++.. ..+ .++...      .+..
T Consensus       256 ~~~~~l~dile~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--~~v~~-~~~~~~Tlt~------~~~~  324 (403)
T 4dkj_A          256 NPPKKIKDILVDSSNYKYLNLNKYETTTFRETKSNIISRPLKNYTTFNS--E--NYVYN-INGIGPTLTA------SGAN  324 (403)
T ss_dssp             CCCCCGGGGCCCCSCCCCCCCTTSCCCCCEECTTSBEEEECTTSCSCGG--G--SEEEE-TTSBBCCCCS------SSGG
T ss_pred             cccccHHHHhccccccccchhhhhccccccccccchhcccccccccccc--C--cceec-CCCcccceec------CCCC
Confidence            2367999999743  1211       110 01111111100 0000000  0  00000 000 000000      0111


Q ss_pred             cceeeecccccCCCChhhHHHHhcCCC-CCcccC--C-CChHHHHHHhhhhhccccchhhhccccccCCC
Q 008149          377 LNLVWVGAYKLGPVDPEHIELILGYPS-NHTQAA--G-NSLTARLESLRHCFQTDTLGYHLSVLKSMFPG  442 (576)
Q Consensus       377 ~nlvW~g~~~~~ple~~E~E~i~GfP~-~~T~~~--~-~~~teR~k~Lg~sf~vdtv~~~lsvLK~~f~~  442 (576)
                      .-++....++++.|+|.|+.||+|||+ +|....  + ++.+++||.+|||..|+++.+++.-|+..+..
T Consensus       325 ~~~~~~~~~~~R~ltprE~~rlqGFpd~~~~~~~~~~~~s~~~~y~~~GNsv~v~v~~~i~~~i~~~l~~  394 (403)
T 4dkj_A          325 SRIKIETQQGVRYLTPLECFKYMQFDVNDFKKVQSTNLISENKMIYIAGNSIPVKILEAIFNTLEFVNNE  394 (403)
T ss_dssp             GSCEEEETTEEEECCHHHHHHHTTCCHHHHHHHHHTSCSCHHHHHHHHHTSCCHHHHHHHHHTCCCCCCC
T ss_pred             ceeEEccCCCcccCCHHHHHHHcCCCHHHhhhhhccCCCCHHHHHhhcCCccCHHHHHHHHHHHHHHHhc
Confidence            222233557899999999999999999 677653  3 79999999999999999999999888877654

>2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ...

Probab=98.83  E-value=2.6e-09  Score=110.19  Aligned_cols=181  Identities=13%  Similarity=0.114  Sum_probs=103.8

Q ss_pred             CCCCccccccccccch----hhhHhhhhhh----ccCCceeeccccc-CcccccccccccCCC-CCC-CCCCCC---CCC
Q 008149          247 AQPPYFFYGNVVDVSI----DCWVKMSHFL----YSLEPEFVNSQYF-SALSRREGYLHNLPT-TNR-FHIPPE---PPM  312 (576)
Q Consensus       247 ~~ppfF~~eNV~~~~~----~~w~~Is~fL----~~i~Pe~vds~~f-saa~R~R~y~hNLP~-~nR-~~~~p~---~p~  312 (576)
                      .+|.||++|||..+-.    ..|..|.+.|    |.+...++||..| .||+|+|.|+=..-. .+. ....|.   ...
T Consensus       111 ~~P~~~~~ENV~gl~~~~~~~~~~~i~~~l~~~GY~v~~~vl~a~~~GvPQ~R~R~~iv~~~~~~~~~~~~fP~~~~~~~  190 (327)
T 2c7p_A          111 KKPKVVFMENVKNFASHDNGNTLEVVKNTMNELDYSFHAKVLNALDYGIPQKRERIYMICFRNDLNIQNFQFPKPFELNT  190 (327)
T ss_dssp             HCCSEEEEEEEGGGGTGGGGHHHHHHHHHHHHTTBCCEEEEEEGGGGTCSBCCEEEEEEEEBGGGCCCCCCCCCCCCCCC
T ss_pred             ccCcEEEEeCcHHHHhccccHHHHHHHHHHHhCCCEEEEEEEEHHHcCCCccceEEEEEEEeCCCCcccccCCCCcCCCC
Confidence            4899999999998854    3566676666    6788999999999 999999999843211 110 011233   257


Q ss_pred             cccccccCC---CccCCC-----cCcCcccceeeccCcchhHHHHHHHHHH--hhc-cCCCchhhhHHHHHh----hcc-
Q 008149          313 TIQDAIPHT---KKWWPS-----WDTRKHLSCINSGTSGISQLCERFEKLL--RDS-RGVLSSQQQRDILHR----SEK-  376 (576)
Q Consensus       313 ti~d~lp~~---~~~wp~-----wd~r~klnci~t~~~~~~~l~~~i~~~~--~~~-~~~~~~~~q~~vl~~----c~k-  376 (576)
                      |+.|+|...   .+|..+     |.-..+...  ........+..  .+..  .+. -+.+...    |...    +.+ 
T Consensus       191 tl~d~l~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~--~~~~~~~~~~~~~~~~T----i~~~~~~~~~~~  262 (327)
T 2c7p_A          191 FVKDLLLPDSEVEHLVIDRKDLVMTNQEIEQT--TPKTVRLGIVG--KGGQGERIYSTRGIAIT----LSAYGGGIFAKT  262 (327)
T ss_dssp             CGGGTCCCGGGTGGGEECCTTCEECSCCCSSC--CSSCCEEEEST--TCCTTCEEEETTSCBCC----CCSSCCSTTTTT
T ss_pred             cHHHHhcccCCcccccccCCcceeEeeccccC--ccchhhhhhcc--CCccccccccCCCCcCc----eecCCCCccCCC
Confidence            899998421   111101     000000000  00000000000  0000  000 0000000    0000    111 


Q ss_pred             cceeeecccccCCCChhhHHHHhcCCCCCcccCCCChHHHHHHhhhhhccccchhhhcccccc
Q 008149          377 LNLVWVGAYKLGPVDPEHIELILGYPSNHTQAAGNSLTARLESLRHCFQTDTLGYHLSVLKSM  439 (576)
Q Consensus       377 ~nlvW~g~~~~~ple~~E~E~i~GfP~~~T~~~~~~~teR~k~Lg~sf~vdtv~~~lsvLK~~  439 (576)
                      .+.+.  +.+.+.|++.|+.||+|||++|+-  ..+.++++|.+||+..+....++...|+..
T Consensus       263 ~~~~~--~~~~R~LT~rE~aRLQgFPd~f~f--~gs~~~~ykqIGNAVp~~l~~~Ia~~i~~~  321 (327)
T 2c7p_A          263 GGYLV--NGKTRKLHPRECARVMGYPDSYKV--HPSTSQAYKQFGNSVVINVLQYIAYNIGSS  321 (327)
T ss_dssp             CEEEE--TTEEEECCHHHHHHHTTCCTTSCC--CSSHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred             CccCC--CCCCcCCCHHHHHHHCCCCcCcEe--CCCHHHHHhHccCCCCHHHHHHHHHHHHHH
Confidence            12222  677899999999999999999984  589999999999999999888776666543

>3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A

Probab=98.83  E-value=3.4e-09  Score=115.06  Aligned_cols=177  Identities=13%  Similarity=0.239  Sum_probs=104.6

Q ss_pred             cCCCCccccccccccch----hhhHhhhhhh----ccCC---------ceeecccccCccccccccc----ccCCCCCCC
Q 008149          246 VAQPPYFFYGNVVDVSI----DCWVKMSHFL----YSLE---------PEFVNSQYFSALSRREGYL----HNLPTTNRF  304 (576)
Q Consensus       246 ~~~ppfF~~eNV~~~~~----~~w~~Is~fL----~~i~---------Pe~vds~~fsaa~R~R~y~----hNLP~~nR~  304 (576)
                      ..+|.||++|||..+-.    ..|..|.+.|    |.|.         +.++||.+|.||+|+|.|+    .+++....|
T Consensus       217 ~~rPk~fvlENV~gl~s~~~g~~f~~i~~~L~~lGY~v~~~~~~g~~~~~vlnA~~~vPQ~R~R~fivg~r~~~~~~~~F  296 (482)
T 3me5_A          217 ARRPAMFVLENVKNLKSHDKGKTFRIIMQTLDELGYDVADAEDNGPDDPKIIDGKHFLPQHRERIVLVGFRRDLNLKADF  296 (482)
T ss_dssp             HHCCSEEEEEEETTTTTGGGGHHHHHHHHHHHHTTEEETTTTCCSTTCTTEEEGGGTSSBCCEEEEEEEEEGGGCCCTTC
T ss_pred             HcCCcEEEEeCcHHHhcccCCcHHHHHHHHHhcCCcEEEeccccCcccceeeeccccCCccceEEEEEEEecCcccccCc
Confidence            35899999999998854    3566666666    4443         7799999999999999997    234332222


Q ss_pred             C------CCCCCCCcccccccCCCccCCCcCcCcccceeeccCcchhHHHHHHHHHH----hhccCC----CchhhhHHH
Q 008149          305 H------IPPEPPMTIQDAIPHTKKWWPSWDTRKHLSCINSGTSGISQLCERFEKLL----RDSRGV----LSSQQQRDI  370 (576)
Q Consensus       305 ~------~~p~~p~ti~d~lp~~~~~wp~wd~r~klnci~t~~~~~~~l~~~i~~~~----~~~~~~----~~~~~q~~v  370 (576)
                      .      ..|.++.||.|+|....      +  .|.  ..+     .++-+.+.+.-    .+.+++    ...+...  
T Consensus       297 ~~~~~~~~~p~~~~~l~diLe~~~------~--~ky--~l~-----~~~~~~l~~~~~~~~~~g~gf~~~i~~~~~~~--  359 (482)
T 3me5_A          297 TLRDISECFPAQRVTLAQLLDPMV------E--AKY--ILT-----PVLWKYLYRYAKKHQARGNGFGYGMVYPNNPQ--  359 (482)
T ss_dssp             CGGGGGGGSCSSCCCTGGGSCSSC------C--GGG--BCC-----HHHHHHHHHHHHC----------CEECTTSGG--
T ss_pred             CccccccccCCCcccHHHHhhccc------c--ccc--ccC-----HHHHHHHHHHHHhhhcccCCcccceecCCccc--
Confidence            2      23555678999996321      0  000  000     01111111100    000010    0000000  


Q ss_pred             HHhhcc---------ccee----e-------------ecccccCCCChhhHHHHhcCCCCCcc--cCCCChHHHHHHhhh
Q 008149          371 LHRSEK---------LNLV----W-------------VGAYKLGPVDPEHIELILGYPSNHTQ--AAGNSLTARLESLRH  422 (576)
Q Consensus       371 l~~c~k---------~nlv----W-------------~g~~~~~ple~~E~E~i~GfP~~~T~--~~~~~~teR~k~Lg~  422 (576)
                       ..|+.         .+++    |             ...++++.|||.|++||+|||...++  .+.++.+++||.+||
T Consensus       360 -~~~~Ti~a~~~k~gs~~~i~~~~~~~~~~~~~~~~~~~~~~~R~lTprE~~rlqgFp~~~~~~~~~~~s~~~~y~q~GN  438 (482)
T 3me5_A          360 -SVTRTLSARYYKDGAEILIDRGWDMATGEKDFDDPLNQQHRPRRLTPRECARLMGFEAPGEAKFRIPVSDTQAYRQFGN  438 (482)
T ss_dssp             -GGTCCBCCC---CCSSSEECCCCCHHHHHHCTTCTTGGGGCCEECCHHHHHHHHTSSCTTCCCSCCCSCHHHHHHHHHT
T ss_pred             -ccceeeEEeeeccCcceeecccccccCCccccccccccCCCcccCCHHHHHHHcCCCCccccceeccCCHHHHHHHcCC
Confidence             00100         0111    1             01357899999999999999953322  247899999999999


Q ss_pred             hhccccchhhhccccccC
Q 008149          423 CFQTDTLGYHLSVLKSMF  440 (576)
Q Consensus       423 sf~vdtv~~~lsvLK~~f  440 (576)
                      +..++++..+...|+.++
T Consensus       439 sV~v~v~~~i~~~l~~~l  456 (482)
T 3me5_A          439 SVVVPVFAAVAKLLEPKI  456 (482)
T ss_dssp             SCCHHHHHHHHHHHHHHH
T ss_pred             ccChHHHHHHHHHHHHHH
Confidence            999999999887776644

>1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26

Probab=98.73  E-value=1.1e-08  Score=105.69  Aligned_cols=54  Identities=19%  Similarity=0.311  Sum_probs=47.5

Q ss_pred             cccccCCCChhhHHHHhcCCCCCcccCCCChHHHHHHhhhhhccccchhhhccc
Q 008149          383 GAYKLGPVDPEHIELILGYPSNHTQAAGNSLTARLESLRHCFQTDTLGYHLSVL  436 (576)
Q Consensus       383 g~~~~~ple~~E~E~i~GfP~~~T~~~~~~~teR~k~Lg~sf~vdtv~~~lsvL  436 (576)
                      .+.+.+.|++.|+.||+|||++|+=.++++.+++||.+||+..++.+..++..|
T Consensus       288 h~~~~R~lT~RE~aRLqgFPd~f~f~g~~s~~~~ykqiGNAVpv~v~~~I~~~l  341 (343)
T 1g55_A          288 LILKLRYFTPKEIANLLGFPPEFGFPEKITVKQRYRLLGNSLNVHVVAKLIKIL  341 (343)
T ss_dssp             HTTCEECCCHHHHHHHTTCCTTCCCCTTSCHHHHHHHHHHSCCHHHHHHHHHHH
T ss_pred             CCCCccccCHHHHHHHcCCChhhccCCCCCHHHHHHHhcCcccHHHHHHHHHHH
Confidence            466789999999999999999999655689999999999999999888776544

>2qrv_B DNA (cytosine-5)-methyltransferase 3-like; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens}

Probab=98.64  E-value=4.9e-09  Score=104.07  Aligned_cols=60  Identities=17%  Similarity=0.221  Sum_probs=47.3

Q ss_pred             ccccCCCC-ccccccccccchhhhHhhhhhhccCCceeecccccCcccccccccccCCCCCC
Q 008149          243 NKVVAQPP-YFFYGNVVDVSIDCWVKMSHFLYSLEPEFVNSQYFSALSRREGYLHNLPTTNR  303 (576)
Q Consensus       243 ~~~~~~pp-fF~~eNV~~~~~~~w~~Is~fL~~i~Pe~vds~~fsaa~R~R~y~hNLP~~nR  303 (576)
                      |+...++| ||++|||..|.......|.+||. +.+.+|||.+|.+++|+|.||+|+|..++
T Consensus       116 Pk~~~~~P~~fv~ENV~gL~~~~~~~i~~~l~-~~~~vLnA~dfgvpQrRr~f~g~~~~~~~  176 (230)
T 2qrv_B          116 PKPGSPRPFFWMFVDNLVLNKEDLDVASRFLE-MEPVTIPDVHGGSLQNAVRVWSNIPAIRS  176 (230)
T ss_dssp             CCSSCCSCCEEEEEECSCSCHHHHHHHHHHHT-SCCEECCCCCSCC----CEEEECSTTSST
T ss_pred             cCcccCCCcEEEEeccHHhhhccHHHHHHHHc-CCcEEEEcccCCcCcccEEEEeecCCCCc
Confidence            33333344 67899999998888899999994 89999999999999999999999998865

>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens}

Probab=98.52  E-value=6.3e-07  Score=80.77  Aligned_cols=109  Identities=18%  Similarity=0.165  Sum_probs=71.8

Q ss_pred             hhhHHHhcCCCChHHHHHHHHHhCCCCcHHHHHHHHHHhhhcccccccCCCCCCCCCCC-CCC---CchhhhhhhhHHHH
Q 008149           18 EKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQISENFEKETDDAPHDNDGT-NED---KSDETLYGTMEITL   93 (576)
Q Consensus        18 ~~r~~li~MGFs~e~V~kAIqe~Ge~~~~~~Ile~Ll~~q~l~~~~~e~~ds~~~~~~~-ne~---~~~e~~~~~~~k~~   93 (576)
                      +...+|++||||.+.+.+|+...|..+ ++.-+++|+..+.-......-.-........ .++   +....+.-..+++.
T Consensus         5 ~~l~~L~~MGF~~~~a~~AL~~t~n~~-~e~A~~wL~~~~~d~di~epl~~~~~~s~~~~~~~~l~~~~~~~~~~e~~v~   83 (126)
T 2lbc_A            5 SSVMQLAEMGFPLEACRKAVYFTGNMG-AEVAFNWIIVHMEEPDFAEPLTMPGYGGAASAGASVFGASGLDNQPPEEIVA   83 (126)
T ss_dssp             HHHHHHHTTSSCCHHHHHHHHHHTSCC-HHHHHHHHHHGGGCSSSSCTTCCSSCCSSSSSCCCCSTTSSCCCCCCHHHHH
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHcCCCC-HHHHHHHHHHhcccccccccccccccccccccchhhhcccccccCcCHHHHH
Confidence            467899999999999999999999877 9999999998754221100000000000000 000   00001111345778


Q ss_pred             HHHhcCCCHHHHHHHHHHhCCCCChhhhhHhHhhcc
Q 008149           94 QLLEMGFSENQVSLAIEKFGSKTPISELADKIFSGQ  129 (576)
Q Consensus        94 ~L~~MGFseeEas~AI~r~G~da~i~eLvD~I~Aaq  129 (576)
                      .|+.|||++++|..|+..+|.+  ++.=++.++...
T Consensus        84 ~L~~MGF~~~~a~~AL~~~~~~--~e~A~e~L~~~~  117 (126)
T 2lbc_A           84 IITSMGFQRNQAIQALRATNNN--LERALDWIFSHP  117 (126)
T ss_dssp             HHHHHTSCHHHHHHHHHHHTSC--HHHHHHHHHTCC
T ss_pred             HHHHcCCCHHHHHHHHHHcCCC--HHHHHHHHHhCC
Confidence            9999999999999999999874  777788887644

>4ft4_B DNA (cytosine-5)-methyltransferase 1; chromodomain, BAH domain, DNA methyltransferase domain, H3K9 binding, methylation, transferase; HET: DNA MLY SAH; 2.70A {Zea mays} PDB: 4ft2_A* 4fsx_A*

Probab=98.32  E-value=5.1e-07  Score=102.07  Aligned_cols=56  Identities=9%  Similarity=0.045  Sum_probs=44.9

Q ss_pred             cccceeeecccccCCCChhhHHHHhcCCCCCcccCCCChHHHHHHhhhhhccccchhh
Q 008149          375 EKLNLVWVGAYKLGPVDPEHIELILGYPSNHTQAAGNSLTARLESLRHCFQTDTLGYH  432 (576)
Q Consensus       375 ~k~nlvW~g~~~~~ple~~E~E~i~GfP~~~T~~~~~~~teR~k~Lg~sf~vdtv~~~  432 (576)
                      ...+..|+-+.+.+.|||.|+.||||||++|+=  ..+.+++||.+||+.-+.....+
T Consensus       678 ~~~~~~~iHp~~~R~LTpRE~ARLQgFPD~y~f--~Gs~~~~ykQIGNAVpp~lA~aI  733 (784)
T 4ft4_B          678 EPHNQVIIHPTQARVLTIRENARLQGFPDYYRL--FGPIKEKYIQVGNAVAVPVARAL  733 (784)
T ss_dssp             CSSSSEEECSSSSSBCCHHHHHHHTTCCTTCCC--CSCHHHHHHHHHHSCCHHHHHHH
T ss_pred             cCCCCeecCCCCCcCCcHHHHHHHCCCCCCCEe--CCCHHHHHhhccCCCCHHHHHHH
Confidence            334445566778899999999999999999984  55999999999999877655444

>3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157}

Probab=98.14  E-value=9.2e-07  Score=92.91  Aligned_cols=53  Identities=13%  Similarity=0.174  Sum_probs=41.8

Q ss_pred             ccccCCCChhhHHHHhcCCCCCcccCCCChHHHHHHhhhhhccccchhhhccccc
Q 008149          384 AYKLGPVDPEHIELILGYPSNHTQAAGNSLTARLESLRHCFQTDTLGYHLSVLKS  438 (576)
Q Consensus       384 ~~~~~ple~~E~E~i~GfP~~~T~~~~~~~teR~k~Lg~sf~vdtv~~~lsvLK~  438 (576)
                      +.+-++|++-|+-||||||++|.=  ..+.++.+|.+||+.-+.....+-..++.
T Consensus       313 P~~~R~lTvRE~ARlQsFPD~f~f--~g~~~~~~~qIGNAVPp~la~aia~~I~~  365 (376)
T 3g7u_A          313 PYHPRVITPREAARLQGFPDWFRF--HVTKWHSFRQIGNSVSPIVAEYILKGLYN  365 (376)
T ss_dssp             SSSSSBCCHHHHHHHHTCCTTCCC--CSSHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred             CccCcCCCHHHHHHhCCCCcceEE--CCChHHhheeeecCCCHHHHHHHHHHHHH
Confidence            456799999999999999999974  56889999999999877655444444443

>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}

Probab=97.81  E-value=4.9e-05  Score=79.20  Aligned_cols=86  Identities=19%  Similarity=0.146  Sum_probs=63.1

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCC-C-CCccccccccccChhhHHHhhhccCC
Q 008149          442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQ-T-GELVQIEDIQALTTKKFESLIHKLGS  519 (576)
Q Consensus       442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~-~-g~l~~~~DI~~lt~~~Ie~l~~~~g~  519 (576)
                      .+-+|||||||+|++++.+.+.|.  ..|+++|+++.+.+..+.+...++. . ...++.+|+.++..    .+....+.
T Consensus       220 ~~~~VLDl~cG~G~~sl~la~~g~--~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~~~----~~~~~~~~  293 (396)
T 3c0k_A          220 ENKRVLNCFSYTGGFAVSALMGGC--SQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLR----TYRDRGEK  293 (396)
T ss_dssp             TTCEEEEESCTTCSHHHHHHHTTC--SEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHH----HHHHTTCC
T ss_pred             CCCeEEEeeccCCHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHH----HHHhcCCC
Confidence            467899999999999999999885  4589999999999999888754432 2 22345567655421    11112257


Q ss_pred             ccEEEecCCCCCcc
Q 008149          520 IDFVICQNSVPQIP  533 (576)
Q Consensus       520 ~DLVIGGpPCQ~FS  533 (576)
                      ||+|+..||+...|
T Consensus       294 fD~Ii~dpP~~~~~  307 (396)
T 3c0k_A          294 FDVIVMDPPKFVEN  307 (396)
T ss_dssp             EEEEEECCSSTTTC
T ss_pred             CCEEEECCCCCCCC
Confidence            99999999987765

>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51

Probab=97.77  E-value=6e-05  Score=77.53  Aligned_cols=85  Identities=15%  Similarity=0.084  Sum_probs=62.4

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCC--CccccccccccChhhHHHhhhccCC
Q 008149          442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG--ELVQIEDIQALTTKKFESLIHKLGS  519 (576)
Q Consensus       442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g--~l~~~~DI~~lt~~~Ie~l~~~~g~  519 (576)
                      .+.+|||||||.|++++.+.+.|.   .|++||+++.+.+..+.+....+...  ..++.+|+.++...    +....+.
T Consensus       153 ~~~~VLDlgcGtG~~sl~la~~ga---~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~l~~----~~~~~~~  225 (332)
T 2igt_A          153 RPLKVLNLFGYTGVASLVAAAAGA---EVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQR----EERRGST  225 (332)
T ss_dssp             SCCEEEEETCTTCHHHHHHHHTTC---EEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHH----HHHHTCC
T ss_pred             CCCcEEEcccccCHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHHHHHHH----HHhcCCC
Confidence            357899999999999999999986   37899999999999988775443222  23456777654221    1111357


Q ss_pred             ccEEEecCCCCCcc
Q 008149          520 IDFVICQNSVPQIP  533 (576)
Q Consensus       520 ~DLVIGGpPCQ~FS  533 (576)
                      ||+|+..|||.+.+
T Consensus       226 fD~Ii~dPP~~~~~  239 (332)
T 2igt_A          226 YDIILTDPPKFGRG  239 (332)
T ss_dssp             BSEEEECCCSEEEC
T ss_pred             ceEEEECCccccCC
Confidence            99999999997665

>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*

Probab=97.70  E-value=2e-05  Score=83.39  Aligned_cols=55  Identities=16%  Similarity=0.216  Sum_probs=47.3

Q ss_pred             CCccccccccccchhhhHhhhhhhccCCceeecccccCcccccccccccCCCCCCC
Q 008149          249 PPYFFYGNVVDVSIDCWVKMSHFLYSLEPEFVNSQYFSALSRREGYLHNLPTTNRF  304 (576)
Q Consensus       249 ppfF~~eNV~~~~~~~w~~Is~fL~~i~Pe~vds~~fsaa~R~R~y~hNLP~~nR~  304 (576)
                      |.||++|||..|..+...+|.+||. +++.+|||.+|.+++|+|-||+|+|+.++.
T Consensus       279 P~~fv~ENV~gL~~~~~~~i~~~L~-v~~~VLnA~dyGVPQrRrRf~g~~~~~~~~  333 (386)
T 2pv0_B          279 PFFWMFVDNLVLNKEDLDVASRFLE-MEPVTIPDVHGGSLQNAVRVWSNIPAIRSR  333 (386)
T ss_dssp             CCEEEEEECSCSCHHHHHHHHHHTT-SCCCEEECCCSSSCCCEEEEEECSSSSSTT
T ss_pred             CcEEEEEechhhhhcchHHHHHHHc-CCeEEEEccccCccccccEEEEECCCcCCc
Confidence            3378999999998888889999995 899999999997766666699999999873

>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*

Probab=97.68  E-value=4.7e-05  Score=77.13  Aligned_cols=83  Identities=16%  Similarity=0.132  Sum_probs=62.3

Q ss_pred             ccCCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCC-ccccccccccChhhHHHhhhc
Q 008149          438 SMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGE-LVQIEDIQALTTKKFESLIHK  516 (576)
Q Consensus       438 ~~f~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~-l~~~~DI~~lt~~~Ie~l~~~  516 (576)
                      +++..+-+|||+|||+|++++.+.+.|-  .-|+++|+|+.+.+.++.+-..++-.+. .++.+|.+++..         
T Consensus       121 ~~~~~g~~VlD~~aG~G~~~i~~a~~g~--~~V~avD~np~a~~~~~~N~~~N~v~~~v~~~~~D~~~~~~---------  189 (278)
T 3k6r_A          121 KVAKPDELVVDMFAGIGHLSLPIAVYGK--AKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPG---------  189 (278)
T ss_dssp             HHCCTTCEEEETTCTTTTTTHHHHHHTC--CEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCC---------
T ss_pred             HhcCCCCEEEEecCcCcHHHHHHHHhcC--CeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCcHHHhcc---------
Confidence            3345678999999999999998888775  2488999999999999987654433222 245678776643         


Q ss_pred             cCCccEEEecCCCCC
Q 008149          517 LGSIDFVICQNSVPQ  531 (576)
Q Consensus       517 ~g~~DLVIGGpPCQ~  531 (576)
                      .+.+|.|+-++|+-.
T Consensus       190 ~~~~D~Vi~~~p~~~  204 (278)
T 3k6r_A          190 ENIADRILMGYVVRT  204 (278)
T ss_dssp             CSCEEEEEECCCSSG
T ss_pred             ccCCCEEEECCCCcH
Confidence            257999999999754

>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32

Probab=97.63  E-value=0.00014  Score=67.49  Aligned_cols=78  Identities=21%  Similarity=0.186  Sum_probs=60.1

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 008149          442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  521 (576)
Q Consensus       442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~D  521 (576)
                      .+.+|||++||.|++...+.+.|..  .|+++|+++.+.+..+.+....+. ...+..+|+.++.           +.+|
T Consensus        49 ~~~~vlD~g~G~G~~~~~l~~~~~~--~v~~vD~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~-----------~~~D  114 (207)
T 1wy7_A           49 EGKVVADLGAGTGVLSYGALLLGAK--EVICVEVDKEAVDVLIENLGEFKG-KFKVFIGDVSEFN-----------SRVD  114 (207)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHTTCS--EEEEEESCHHHHHHHHHHTGGGTT-SEEEEESCGGGCC-----------CCCS
T ss_pred             CcCEEEEeeCCCCHHHHHHHHcCCC--EEEEEECCHHHHHHHHHHHHHcCC-CEEEEECchHHcC-----------CCCC
Confidence            4578999999999999999998863  588999999999888876654322 2234567777653           3699


Q ss_pred             EEEecCCCCCcc
Q 008149          522 FVICQNSVPQIP  533 (576)
Q Consensus       522 LVIGGpPCQ~FS  533 (576)
                      +|+..||+...+
T Consensus       115 ~v~~~~p~~~~~  126 (207)
T 1wy7_A          115 IVIMNPPFGSQR  126 (207)
T ss_dssp             EEEECCCCSSSS
T ss_pred             EEEEcCCCcccc
Confidence            999999976654

>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*

Probab=97.56  E-value=0.00011  Score=72.93  Aligned_cols=81  Identities=16%  Similarity=0.118  Sum_probs=62.3

Q ss_pred             CCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCC-CccccccccccChhhHHHhhhccC
Q 008149          440 FPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLG  518 (576)
Q Consensus       440 f~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g-~l~~~~DI~~lt~~~Ie~l~~~~g  518 (576)
                      ...+-+|||+|||.|++++.+.+.|..  .|+++|+++.+.+..+.+...++... ..+..+|+.++..         .+
T Consensus       123 ~~~~~~VLDlgcG~G~~~~~la~~~~~--~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~~~---------~~  191 (278)
T 2frn_A          123 AKPDELVVDMFAGIGHLSLPIAVYGKA--KVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPG---------EN  191 (278)
T ss_dssp             CCTTCEEEETTCTTTTTHHHHHHHTCC--EEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCC---------CS
T ss_pred             CCCCCEEEEecccCCHHHHHHHHhCCC--EEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHHHhcc---------cC
Confidence            344788999999999999999998874  48999999999998888765443322 2256788877653         24


Q ss_pred             CccEEEecCCCCC
Q 008149          519 SIDFVICQNSVPQ  531 (576)
Q Consensus       519 ~~DLVIGGpPCQ~  531 (576)
                      .||+|+..+|+..
T Consensus       192 ~fD~Vi~~~p~~~  204 (278)
T 2frn_A          192 IADRILMGYVVRT  204 (278)
T ss_dssp             CEEEEEECCCSSG
T ss_pred             CccEEEECCchhH
Confidence            7999999999654

>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*

Probab=97.54  E-value=0.00013  Score=69.49  Aligned_cols=81  Identities=17%  Similarity=0.182  Sum_probs=61.8

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCC-CCCccccccccccChhhHHHhhhccCCc
Q 008149          442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQ-TGELVQIEDIQALTTKKFESLIHKLGSI  520 (576)
Q Consensus       442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~-~g~l~~~~DI~~lt~~~Ie~l~~~~g~~  520 (576)
                      .+.+|||+.||.|++.+.|.+.|.   .|+++|+++.+.+..+.+....+. ....++.+|+.++..         .+.|
T Consensus        78 ~~~~vLD~gcG~G~~~~~la~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~---------~~~~  145 (241)
T 3gdh_A           78 KCDVVVDAFCGVGGNTIQFALTGM---RVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLAS---------FLKA  145 (241)
T ss_dssp             CCSEEEETTCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHGG---------GCCC
T ss_pred             CCCEEEECccccCHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHHhcc---------cCCC
Confidence            467899999999999999999984   378999999999888877654322 112245567665431         2579


Q ss_pred             cEEEecCCCCCccc
Q 008149          521 DFVICQNSVPQIPN  534 (576)
Q Consensus       521 DLVIGGpPCQ~FS~  534 (576)
                      |+|+..+||..+..
T Consensus       146 D~v~~~~~~~~~~~  159 (241)
T 3gdh_A          146 DVVFLSPPWGGPDY  159 (241)
T ss_dssp             SEEEECCCCSSGGG
T ss_pred             CEEEECCCcCCcch
Confidence            99999999998764

>3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A*

Probab=97.47  E-value=0.00015  Score=84.91  Aligned_cols=49  Identities=6%  Similarity=-0.061  Sum_probs=39.3

Q ss_pred             cccCCCChhhHHHHhcCCCCCcccCCCChHHHHHHhhhhhccccchhhhcc
Q 008149          385 YKLGPVDPEHIELILGYPSNHTQAAGNSLTARLESLRHCFQTDTLGYHLSV  435 (576)
Q Consensus       385 ~~~~ple~~E~E~i~GfP~~~T~~~~~~~teR~k~Lg~sf~vdtv~~~lsv  435 (576)
                      .+.+.|++-|+.||||||++|.=  ..+.+++++.+||+.-+.....+...
T Consensus       945 ~~~R~lt~rE~arlQ~fPd~~~f--~g~~~~~~~qiGNaVp~~~~~~i~~~  993 (1002)
T 3swr_A          945 EQHRVVSVRECARSQGFPDTYRL--FGNILDKHRQVGNAVPPPLAKAIGLE  993 (1002)
T ss_dssp             SSSSBCCHHHHHHHTTCCTTCCC--CSSHHHHHHHHHHSCCHHHHHHHHHH
T ss_pred             ccccCCCHHHHHHhCCCCcceEE--cCChHHHheeeeccCCHHHHHHHHHH
Confidence            35688999999999999999974  55889999999999877654444333

>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*

Probab=97.36  E-value=0.00044  Score=72.25  Aligned_cols=86  Identities=15%  Similarity=0.139  Sum_probs=60.3

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCC--CCccccccccccChhhHHHhhhccCC
Q 008149          442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQT--GELVQIEDIQALTTKKFESLIHKLGS  519 (576)
Q Consensus       442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~--g~l~~~~DI~~lt~~~Ie~l~~~~g~  519 (576)
                      .+-+|||||||.|++++.+.+.|.  ..|++||+++.+.+..+.+...++..  ...++.+|+.++-    ..+...-..
T Consensus       212 ~~~~VLDl~cGtG~~sl~la~~ga--~~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~~~~l----~~~~~~~~~  285 (385)
T 2b78_A          212 AGKTVLNLFSYTAAFSVAAAMGGA--MATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYF----KYARRHHLT  285 (385)
T ss_dssp             BTCEEEEETCTTTHHHHHHHHTTB--SEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHH----HHHHHTTCC
T ss_pred             CCCeEEEEeeccCHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHH----HHHHHhCCC
Confidence            457899999999999999988875  35899999999999988877654332  2234566765432    222112247


Q ss_pred             ccEEEecCCCCCcc
Q 008149          520 IDFVICQNSVPQIP  533 (576)
Q Consensus       520 ~DLVIGGpPCQ~FS  533 (576)
                      ||+|+.-||+-+.+
T Consensus       286 fD~Ii~DPP~~~~~  299 (385)
T 2b78_A          286 YDIIIIDPPSFARN  299 (385)
T ss_dssp             EEEEEECCCCC---
T ss_pred             ccEEEECCCCCCCC
Confidence            99999999986443

>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}

Probab=97.35  E-value=0.00018  Score=75.99  Aligned_cols=77  Identities=16%  Similarity=0.176  Sum_probs=57.1

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 008149          442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  521 (576)
Q Consensus       442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~D  521 (576)
                      .+-+|||+|||.|++++.+.+.|.  . |++||+++.+.+..+.+...++... .+..+|+.++-    .   ...+.||
T Consensus       214 ~g~~VLDlg~GtG~~sl~~a~~ga--~-V~avDis~~al~~a~~n~~~ng~~~-~~~~~D~~~~l----~---~~~~~fD  282 (393)
T 4dmg_A          214 PGERVLDVYSYVGGFALRAARKGA--Y-ALAVDKDLEALGVLDQAALRLGLRV-DIRHGEALPTL----R---GLEGPFH  282 (393)
T ss_dssp             TTCEEEEESCTTTHHHHHHHHTTC--E-EEEEESCHHHHHHHHHHHHHHTCCC-EEEESCHHHHH----H---TCCCCEE
T ss_pred             CCCeEEEcccchhHHHHHHHHcCC--e-EEEEECCHHHHHHHHHHHHHhCCCC-cEEEccHHHHH----H---HhcCCCC
Confidence            478999999999999999999886  4 8999999999998888765443222 23345554321    1   1124599


Q ss_pred             EEEecCCC
Q 008149          522 FVICQNSV  529 (576)
Q Consensus       522 LVIGGpPC  529 (576)
                      +|+.-|||
T Consensus       283 ~Ii~dpP~  290 (393)
T 4dmg_A          283 HVLLDPPT  290 (393)
T ss_dssp             EEEECCCC
T ss_pred             EEEECCCc
Confidence            99999999

>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}

Probab=97.32  E-value=0.00021  Score=65.73  Aligned_cols=82  Identities=18%  Similarity=0.344  Sum_probs=58.7

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 008149          442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  521 (576)
Q Consensus       442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~D  521 (576)
                      .+-+||||+||.|++.+.+...|.  ..|+++|+++.+.+..+.+....+.....++.+|+.++...    +  ..+.||
T Consensus        44 ~~~~vLDlgcG~G~~~~~~~~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~----~--~~~~fD  115 (189)
T 3p9n_A           44 TGLAVLDLYAGSGALGLEALSRGA--ASVLFVESDQRSAAVIARNIEALGLSGATLRRGAVAAVVAA----G--TTSPVD  115 (189)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHTTC--SEEEEEECCHHHHHHHHHHHHHHTCSCEEEEESCHHHHHHH----C--CSSCCS
T ss_pred             CCCEEEEeCCCcCHHHHHHHHCCC--CeEEEEECCHHHHHHHHHHHHHcCCCceEEEEccHHHHHhh----c--cCCCcc
Confidence            467899999999999997777775  35899999999999888877654322223456676554210    0  125899


Q ss_pred             EEEecCCCCC
Q 008149          522 FVICQNSVPQ  531 (576)
Q Consensus       522 LVIGGpPCQ~  531 (576)
                      +|+..+|...
T Consensus       116 ~i~~~~p~~~  125 (189)
T 3p9n_A          116 LVLADPPYNV  125 (189)
T ss_dssp             EEEECCCTTS
T ss_pred             EEEECCCCCc
Confidence            9999988543

>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46

Probab=97.29  E-value=0.00041  Score=61.63  Aligned_cols=86  Identities=15%  Similarity=0.202  Sum_probs=59.6

Q ss_pred             cccCCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhc
Q 008149          437 KSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHK  516 (576)
Q Consensus       437 K~~f~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~  516 (576)
                      +..++.+-+|||+.||.|.+...+.+.|..   |+++|+++.+.+..+.+....+. ...+..+|+.+..    ..+...
T Consensus        36 ~~~~~~~~~vLD~GcG~G~~~~~l~~~~~~---v~~vD~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~----~~~~~~  107 (171)
T 1ws6_A           36 RLRYPRRGRFLDPFAGSGAVGLEAASEGWE---AVLVEKDPEAVRLLKENVRRTGL-GARVVALPVEVFL----PEAKAQ  107 (171)
T ss_dssp             HHHCTTCCEEEEETCSSCHHHHHHHHTTCE---EEEECCCHHHHHHHHHHHHHHTC-CCEEECSCHHHHH----HHHHHT
T ss_pred             HhhccCCCeEEEeCCCcCHHHHHHHHCCCe---EEEEeCCHHHHHHHHHHHHHcCC-ceEEEeccHHHHH----Hhhhcc
Confidence            333435678999999999999999999864   89999999998888877654432 2234556665421    111111


Q ss_pred             cCCccEEEecCCCC
Q 008149          517 LGSIDFVICQNSVP  530 (576)
Q Consensus       517 ~g~~DLVIGGpPCQ  530 (576)
                      .+.+|+|+..+|..
T Consensus       108 ~~~~D~i~~~~~~~  121 (171)
T 1ws6_A          108 GERFTVAFMAPPYA  121 (171)
T ss_dssp             TCCEEEEEECCCTT
T ss_pred             CCceEEEEECCCCc
Confidence            23699999988864

>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46

Probab=97.27  E-value=0.00028  Score=66.39  Aligned_cols=77  Identities=14%  Similarity=0.106  Sum_probs=55.5

Q ss_pred             CCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCccE
Q 008149          443 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDF  522 (576)
Q Consensus       443 ~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~DL  522 (576)
                      +.+||||+||.|.+++.+...|.  ..|+++|+++.+.+..+.+....+.....++.+|+.++..       ...+.||+
T Consensus        55 ~~~vLDlgcG~G~~~~~l~~~~~--~~V~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~D~~~~~~-------~~~~~fD~  125 (202)
T 2fpo_A           55 DAQCLDCFAGSGALGLEALSRYA--AGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLA-------QKGTPHNI  125 (202)
T ss_dssp             TCEEEETTCTTCHHHHHHHHTTC--SEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHS-------SCCCCEEE
T ss_pred             CCeEEEeCCCcCHHHHHHHhcCC--CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHh-------hcCCCCCE
Confidence            57899999999999998777776  3589999999999999887755432222244566554211       11257999


Q ss_pred             EEecCC
Q 008149          523 VICQNS  528 (576)
Q Consensus       523 VIGGpP  528 (576)
                      |+..+|
T Consensus       126 V~~~~p  131 (202)
T 2fpo_A          126 VFVDPP  131 (202)
T ss_dssp             EEECCS
T ss_pred             EEECCC
Confidence            999888

>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46

Probab=97.26  E-value=0.00042  Score=65.09  Aligned_cols=80  Identities=16%  Similarity=0.073  Sum_probs=55.9

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCC--CCCccccccccccChhhHHHhhhccCC
Q 008149          442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQ--TGELVQIEDIQALTTKKFESLIHKLGS  519 (576)
Q Consensus       442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~--~g~l~~~~DI~~lt~~~Ie~l~~~~g~  519 (576)
                      .+.+|||++||.|++++.+...|.  ..|+++|+|+.+.+..+.+....+.  ....+..+|+.++...    +  ..+.
T Consensus        53 ~~~~vLDlGcGtG~~~~~~~~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~----~--~~~~  124 (201)
T 2ift_A           53 HQSECLDGFAGSGSLGFEALSRQA--KKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQ----P--QNQP  124 (201)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHTTC--SEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTS----C--CSSC
T ss_pred             CCCeEEEcCCccCHHHHHHHHccC--CEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHHh----h--ccCC
Confidence            356899999999999998777775  3589999999999988887654432  1223445666543210    0  1246


Q ss_pred             -ccEEEecCCC
Q 008149          520 -IDFVICQNSV  529 (576)
Q Consensus       520 -~DLVIGGpPC  529 (576)
                       ||+|+..+|.
T Consensus       125 ~fD~I~~~~~~  135 (201)
T 2ift_A          125 HFDVVFLDPPF  135 (201)
T ss_dssp             CEEEEEECCCS
T ss_pred             CCCEEEECCCC
Confidence             9999999883

>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}

Probab=97.25  E-value=0.00054  Score=67.89  Aligned_cols=80  Identities=19%  Similarity=0.132  Sum_probs=60.2

Q ss_pred             CCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCC
Q 008149          440 FPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGS  519 (576)
Q Consensus       440 f~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~  519 (576)
                      +..+-+|||+|||+|++++.+.+.+-. ..|+++|+++.+.+..+.+...++.....++.+|+.++ ..        .+.
T Consensus       117 ~~~~~~VLDlgcG~G~~s~~la~~~~~-~~V~~vD~s~~av~~a~~n~~~n~l~~~~~~~~d~~~~-~~--------~~~  186 (272)
T 3a27_A          117 SNENEVVVDMFAGIGYFTIPLAKYSKP-KLVYAIEKNPTAYHYLCENIKLNKLNNVIPILADNRDV-EL--------KDV  186 (272)
T ss_dssp             CCTTCEEEETTCTTTTTHHHHHHHTCC-SEEEEEECCHHHHHHHHHHHHHTTCSSEEEEESCGGGC-CC--------TTC
T ss_pred             cCCCCEEEEecCcCCHHHHHHHHhCCC-CEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEECChHHc-Cc--------cCC
Confidence            345678999999999999988876421 24889999999999888877554333334667888776 32        247


Q ss_pred             ccEEEecCCC
Q 008149          520 IDFVICQNSV  529 (576)
Q Consensus       520 ~DLVIGGpPC  529 (576)
                      +|+|+-.+|.
T Consensus       187 ~D~Vi~d~p~  196 (272)
T 3a27_A          187 ADRVIMGYVH  196 (272)
T ss_dssp             EEEEEECCCS
T ss_pred             ceEEEECCcc
Confidence            9999999996

>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A

Probab=97.18  E-value=0.00043  Score=68.45  Aligned_cols=87  Identities=16%  Similarity=0.186  Sum_probs=57.9

Q ss_pred             CCCcccccCCCCChhHHHHHHc--CCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCC
Q 008149          442 GGLTMLSVFSGIGGAEVTLHRL--GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGS  519 (576)
Q Consensus       442 ~~l~VLsLFSGiGG~slGL~~a--Gi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~  519 (576)
                      .+.+|||++||.||.+..+..+  |-  ..|+++|+++...+.++.+....+.....+..+|+.++...    +....+.
T Consensus        83 ~g~~VLDlgaG~G~~t~~la~~~~~~--~~v~avD~~~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~----~~~~~~~  156 (274)
T 3ajd_A           83 EDDFILDMCAAPGGKTTHLAQLMKNK--GTIVAVEISKTRTKALKSNINRMGVLNTIIINADMRKYKDY----LLKNEIF  156 (274)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHHTTTC--SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCHHHHHHH----HHHTTCC
T ss_pred             CcCEEEEeCCCccHHHHHHHHHcCCC--CEEEEECCCHHHHHHHHHHHHHhCCCcEEEEeCChHhcchh----hhhcccc
Confidence            4678999999999999887763  31  24889999999988888776544332233445666544211    0011357


Q ss_pred             ccEEEecCCCCCccc
Q 008149          520 IDFVICQNSVPQIPN  534 (576)
Q Consensus       520 ~DLVIGGpPCQ~FS~  534 (576)
                      ||+|+..+||.++..
T Consensus       157 fD~Vl~d~Pcs~~g~  171 (274)
T 3ajd_A          157 FDKILLDAPCSGNII  171 (274)
T ss_dssp             EEEEEEEECCC----
T ss_pred             CCEEEEcCCCCCCcc
Confidence            999999999998764

>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51

Probab=97.18  E-value=0.00071  Score=70.38  Aligned_cols=86  Identities=20%  Similarity=0.138  Sum_probs=61.2

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCC-CCccccccccccChhhHHHhhhccCCc
Q 008149          442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQT-GELVQIEDIQALTTKKFESLIHKLGSI  520 (576)
Q Consensus       442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~-g~l~~~~DI~~lt~~~Ie~l~~~~g~~  520 (576)
                      .+-+|||||||+|++++.+...|.  .-|+++|+++.+.+..+.+...++.. ...++.+|+.++..    .+....+.|
T Consensus       217 ~~~~VLDl~~G~G~~~~~la~~g~--~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~~~~~~----~~~~~~~~f  290 (396)
T 2as0_A          217 PGDRVLDVFTYTGGFAIHAAIAGA--DEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEME----KLQKKGEKF  290 (396)
T ss_dssp             TTCEEEETTCTTTHHHHHHHHTTC--SEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHH----HHHHTTCCE
T ss_pred             CCCeEEEecCCCCHHHHHHHHCCC--CEEEEEeCCHHHHHHHHHHHHHcCCCccceEEECCHHHHHH----HHHhhCCCC
Confidence            567899999999999999998875  35899999999999888877544322 12244566654321    111123579


Q ss_pred             cEEEecCCCCCcc
Q 008149          521 DFVICQNSVPQIP  533 (576)
Q Consensus       521 DLVIGGpPCQ~FS  533 (576)
                      |+|+.-||+-..+
T Consensus       291 D~Vi~dpP~~~~~  303 (396)
T 2as0_A          291 DIVVLDPPAFVQH  303 (396)
T ss_dssp             EEEEECCCCSCSS
T ss_pred             CEEEECCCCCCCC
Confidence            9999999985544

>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*

Probab=97.11  E-value=0.0012  Score=68.54  Aligned_cols=85  Identities=20%  Similarity=0.129  Sum_probs=60.4

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 008149          442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  521 (576)
Q Consensus       442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~D  521 (576)
                      .+-+|||+|||.|++++.+...+   .-|+++|+++.+.+..+.+...++.....++.+|+.++..    .+....+.+|
T Consensus       209 ~~~~VLDlg~G~G~~~~~la~~~---~~v~~vD~s~~~~~~a~~n~~~n~~~~~~~~~~d~~~~~~----~~~~~~~~fD  281 (382)
T 1wxx_A          209 RGERALDVFSYAGGFALHLALGF---REVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLR----RLEKEGERFD  281 (382)
T ss_dssp             CEEEEEEETCTTTHHHHHHHHHE---EEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHH----HHHHTTCCEE
T ss_pred             CCCeEEEeeeccCHHHHHHHHhC---CEEEEEECCHHHHHHHHHHHHHcCCCCceEEECCHHHHHH----HHHhcCCCee
Confidence            46789999999999999988763   4589999999999988887654432223345566655422    1111235799


Q ss_pred             EEEecCCCCCcc
Q 008149          522 FVICQNSVPQIP  533 (576)
Q Consensus       522 LVIGGpPCQ~FS  533 (576)
                      +|+.-||+-..+
T Consensus       282 ~Ii~dpP~~~~~  293 (382)
T 1wxx_A          282 LVVLDPPAFAKG  293 (382)
T ss_dssp             EEEECCCCSCCS
T ss_pred             EEEECCCCCCCC
Confidence            999999985544

>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*

Probab=97.07  E-value=0.00074  Score=69.08  Aligned_cols=76  Identities=13%  Similarity=0.164  Sum_probs=56.8

Q ss_pred             CCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCC-CCccccccccccChhhHHHhhhccCC
Q 008149          441 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQT-GELVQIEDIQALTTKKFESLIHKLGS  519 (576)
Q Consensus       441 ~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~-g~l~~~~DI~~lt~~~Ie~l~~~~g~  519 (576)
                      ..+-+|||||||+|++++. .+ |.  ..|+++|+++.+.+..+.+...++.. ...++.+|+.++.           +.
T Consensus       194 ~~~~~VLDlg~G~G~~~l~-a~-~~--~~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~~~~~-----------~~  258 (336)
T 2yx1_A          194 SLNDVVVDMFAGVGPFSIA-CK-NA--KKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVREVD-----------VK  258 (336)
T ss_dssp             CTTCEEEETTCTTSHHHHH-TT-TS--SEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCC-----------CC
T ss_pred             CCCCEEEEccCccCHHHHh-cc-CC--CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECChHHhc-----------CC
Confidence            4567899999999999988 55 43  45899999999999998877544321 2235567776553           47


Q ss_pred             ccEEEecCCCCC
Q 008149          520 IDFVICQNSVPQ  531 (576)
Q Consensus       520 ~DLVIGGpPCQ~  531 (576)
                      +|+|+..+|...
T Consensus       259 fD~Vi~dpP~~~  270 (336)
T 2yx1_A          259 GNRVIMNLPKFA  270 (336)
T ss_dssp             EEEEEECCTTTG
T ss_pred             CcEEEECCcHhH
Confidence            999999988654

>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}

Probab=97.06  E-value=0.00053  Score=70.97  Aligned_cols=84  Identities=10%  Similarity=0.060  Sum_probs=58.9

Q ss_pred             CCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhc------
Q 008149          443 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHK------  516 (576)
Q Consensus       443 ~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~------  516 (576)
                      +-+|||||||+|++++.+.+.+   .-|+++|+++.+.+..+.+...++.....++.+|+.++..    .+...      
T Consensus       214 ~~~vLDl~cG~G~~~l~la~~~---~~V~gvd~~~~ai~~a~~n~~~ng~~~v~~~~~d~~~~~~----~~~~~~~~~~l  286 (369)
T 3bt7_A          214 KGDLLELYCGNGNFSLALARNF---DRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQ----AMNGVREFNRL  286 (369)
T ss_dssp             CSEEEEESCTTSHHHHHHGGGS---SEEEEECCCHHHHHHHHHHHHHTTCCSEEEECCCSHHHHH----HHSSCCCCTTG
T ss_pred             CCEEEEccCCCCHHHHHHHhcC---CEEEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHHHHH----HHhhccccccc
Confidence            4679999999999999988744   3589999999999998887754433223345667654421    11110      


Q ss_pred             ------cCCccEEEecCCCCCcc
Q 008149          517 ------LGSIDFVICQNSVPQIP  533 (576)
Q Consensus       517 ------~g~~DLVIGGpPCQ~FS  533 (576)
                            .+.||+|+--||+.+..
T Consensus       287 ~~~~~~~~~fD~Vv~dPPr~g~~  309 (369)
T 3bt7_A          287 QGIDLKSYQCETIFVDPPRSGLD  309 (369)
T ss_dssp             GGSCGGGCCEEEEEECCCTTCCC
T ss_pred             cccccccCCCCEEEECcCccccH
Confidence                  02699999999987543

>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32

Probab=97.04  E-value=0.001  Score=61.56  Aligned_cols=74  Identities=19%  Similarity=0.241  Sum_probs=55.4

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 008149          442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  521 (576)
Q Consensus       442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~D  521 (576)
                      .+.+|||++||.|++...+.+.|.  ..|+++|+++.+.+..+.+..     ...++.+|+.++.           +.+|
T Consensus        51 ~~~~vlD~gcG~G~~~~~l~~~~~--~~v~~vD~~~~~~~~a~~~~~-----~~~~~~~d~~~~~-----------~~~D  112 (200)
T 1ne2_A           51 GGRSVIDAGTGNGILACGSYLLGA--ESVTAFDIDPDAIETAKRNCG-----GVNFMVADVSEIS-----------GKYD  112 (200)
T ss_dssp             BTSEEEEETCTTCHHHHHHHHTTB--SEEEEEESCHHHHHHHHHHCT-----TSEEEECCGGGCC-----------CCEE
T ss_pred             CCCEEEEEeCCccHHHHHHHHcCC--CEEEEEECCHHHHHHHHHhcC-----CCEEEECcHHHCC-----------CCee
Confidence            457899999999999999998875  348999999999888876542     2235667877653           3799


Q ss_pred             EEEecCCCCCcc
Q 008149          522 FVICQNSVPQIP  533 (576)
Q Consensus       522 LVIGGpPCQ~FS  533 (576)
                      +|+..+|-..+.
T Consensus       113 ~v~~~~p~~~~~  124 (200)
T 1ne2_A          113 TWIMNPPFGSVV  124 (200)
T ss_dssp             EEEECCCC----
T ss_pred             EEEECCCchhcc
Confidence            999998866554

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=96.97  E-value=0.0011  Score=74.98  Aligned_cols=83  Identities=19%  Similarity=0.174  Sum_probs=59.5

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCC--CCccccccccccChhhHHHhhhccCC
Q 008149          442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQT--GELVQIEDIQALTTKKFESLIHKLGS  519 (576)
Q Consensus       442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~--g~l~~~~DI~~lt~~~Ie~l~~~~g~  519 (576)
                      .+-+|||||||.|++++.+.+.|..  -|++||+++.+....+.+...++..  ...++.+|+.++-    .   ...+.
T Consensus       539 ~g~~VLDlg~GtG~~sl~aa~~ga~--~V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~~D~~~~l----~---~~~~~  609 (703)
T 3v97_A          539 KGKDFLNLFSYTGSATVHAGLGGAR--STTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQADCLAWL----R---EANEQ  609 (703)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHTTCS--EEEEEESCHHHHHHHHHHHHHTTCCSTTEEEEESCHHHHH----H---HCCCC
T ss_pred             CCCcEEEeeechhHHHHHHHHCCCC--EEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHH----H---hcCCC
Confidence            4678999999999999999888863  4899999999999998887654322  1224456665421    1   12257


Q ss_pred             ccEEEecCCCCCcc
Q 008149          520 IDFVICQNSVPQIP  533 (576)
Q Consensus       520 ~DLVIGGpPCQ~FS  533 (576)
                      ||+|+.-|||-.-|
T Consensus       610 fD~Ii~DPP~f~~~  623 (703)
T 3v97_A          610 FDLIFIDPPTFSNS  623 (703)
T ss_dssp             EEEEEECCCSBC--
T ss_pred             ccEEEECCccccCC
Confidence            99999999984433

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}

Probab=96.93  E-value=0.0019  Score=62.76  Aligned_cols=84  Identities=17%  Similarity=0.150  Sum_probs=60.1

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCC-CccccccccccChhhHHHhhhccCCc
Q 008149          442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGSI  520 (576)
Q Consensus       442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g-~l~~~~DI~~lt~~~Ie~l~~~~g~~  520 (576)
                      .+.+|||+.||.|++.+.+.+.+-.  .|+++|+++.+....+.+....+... ..+..+|+.++... +     ..+.|
T Consensus        49 ~~~~vLDlG~G~G~~~~~la~~~~~--~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~~~-~-----~~~~f  120 (259)
T 3lpm_A           49 RKGKIIDLCSGNGIIPLLLSTRTKA--KIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITDL-I-----PKERA  120 (259)
T ss_dssp             SCCEEEETTCTTTHHHHHHHTTCCC--EEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGGGT-S-----CTTCE
T ss_pred             CCCEEEEcCCchhHHHHHHHHhcCC--cEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhhhh-h-----ccCCc
Confidence            4678999999999999999888742  58899999999988888765443322 23566788765421 1     12589


Q ss_pred             cEEEecCCCCCcc
Q 008149          521 DFVICQNSVPQIP  533 (576)
Q Consensus       521 DLVIGGpPCQ~FS  533 (576)
                      |+|+.-||+-..+
T Consensus       121 D~Ii~npPy~~~~  133 (259)
T 3lpm_A          121 DIVTCNPPYFATP  133 (259)
T ss_dssp             EEEEECCCC----
T ss_pred             cEEEECCCCCCCc
Confidence            9999999987663

>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}

Probab=96.90  E-value=0.0022  Score=60.32  Aligned_cols=83  Identities=14%  Similarity=0.172  Sum_probs=58.9

Q ss_pred             CCCCCcccccCCC-CChhHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhcc
Q 008149          440 FPGGLTMLSVFSG-IGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKL  517 (576)
Q Consensus       440 f~~~l~VLsLFSG-iGG~slGL~~a-Gi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~  517 (576)
                      .+.+.+|||+.|| .|.+.+.+.+. +.   .|+++|+++.+.+..+.+....+. ...+..+|+..+..  +   .  -
T Consensus        53 ~~~~~~vLDlG~G~~G~~~~~la~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~-~v~~~~~d~~~~~~--~---~--~  121 (230)
T 3evz_A           53 LRGGEVALEIGTGHTAMMALMAEKFFNC---KVTATEVDEEFFEYARRNIERNNS-NVRLVKSNGGIIKG--V---V--E  121 (230)
T ss_dssp             CCSSCEEEEECCTTTCHHHHHHHHHHCC---EEEEEECCHHHHHHHHHHHHHTTC-CCEEEECSSCSSTT--T---C--C
T ss_pred             cCCCCEEEEcCCCHHHHHHHHHHHhcCC---EEEEEECCHHHHHHHHHHHHHhCC-CcEEEeCCchhhhh--c---c--c
Confidence            3467899999999 99999998887 54   478999999998888877654432 23345677654332  1   1  1


Q ss_pred             CCccEEEecCCCCCcc
Q 008149          518 GSIDFVICQNSVPQIP  533 (576)
Q Consensus       518 g~~DLVIGGpPCQ~FS  533 (576)
                      +.||+|+.-+|+-...
T Consensus       122 ~~fD~I~~npp~~~~~  137 (230)
T 3evz_A          122 GTFDVIFSAPPYYDKP  137 (230)
T ss_dssp             SCEEEEEECCCCC---
T ss_pred             CceeEEEECCCCcCCc
Confidence            5799999999986654

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}

Probab=96.89  E-value=0.0015  Score=60.55  Aligned_cols=87  Identities=18%  Similarity=0.197  Sum_probs=62.1

Q ss_pred             hccccccCCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHH
Q 008149          433 LSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFES  512 (576)
Q Consensus       433 lsvLK~~f~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~  512 (576)
                      +..|..+.+.+.+|||+.||.|.+...+.+.|.  ..++++|+++...+..+.+....+.....+..+|+.+..      
T Consensus        51 ~~~l~~~~~~~~~vLDiG~G~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~------  122 (205)
T 3grz_A           51 MLGIERAMVKPLTVADVGTGSGILAIAAHKLGA--KSVLATDISDESMTAAEENAALNGIYDIALQKTSLLADV------  122 (205)
T ss_dssp             HHHHHHHCSSCCEEEEETCTTSHHHHHHHHTTC--SEEEEEESCHHHHHHHHHHHHHTTCCCCEEEESSTTTTC------
T ss_pred             HHHHHHhccCCCEEEEECCCCCHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHHcCCCceEEEeccccccC------
Confidence            333444445678999999999999999998875  358899999999888877665443222334566765432      


Q ss_pred             hhhccCCccEEEecCCCCC
Q 008149          513 LIHKLGSIDFVICQNSVPQ  531 (576)
Q Consensus       513 l~~~~g~~DLVIGGpPCQ~  531 (576)
                          .+.+|+|+..+|.+.
T Consensus       123 ----~~~fD~i~~~~~~~~  137 (205)
T 3grz_A          123 ----DGKFDLIVANILAEI  137 (205)
T ss_dssp             ----CSCEEEEEEESCHHH
T ss_pred             ----CCCceEEEECCcHHH
Confidence                157999999887654

>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46

Probab=96.78  E-value=0.0027  Score=57.25  Aligned_cols=81  Identities=19%  Similarity=0.226  Sum_probs=55.5

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCC-CCccccccccccChhhHHHhhhccCCc
Q 008149          442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQT-GELVQIEDIQALTTKKFESLIHKLGSI  520 (576)
Q Consensus       442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~-g~l~~~~DI~~lt~~~Ie~l~~~~g~~  520 (576)
                      .+-+|||+.||.|++.+.+.+.|.  ..|+++|+++.+.+..+.+....+.. ...++.+|+.+...    .+....+.|
T Consensus        44 ~~~~vLD~GcG~G~~~~~~~~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~----~~~~~~~~f  117 (187)
T 2fhp_A           44 DGGMALDLYSGSGGLAIEAVSRGM--DKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALE----QFYEEKLQF  117 (187)
T ss_dssp             SSCEEEETTCTTCHHHHHHHHTTC--SEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHH----HHHHTTCCE
T ss_pred             CCCCEEEeCCccCHHHHHHHHcCC--CEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHH----HHHhcCCCC
Confidence            356899999999999998777764  35889999999988888776543221 12245566654321    111113579


Q ss_pred             cEEEecCC
Q 008149          521 DFVICQNS  528 (576)
Q Consensus       521 DLVIGGpP  528 (576)
                      |+|+..+|
T Consensus       118 D~i~~~~~  125 (187)
T 2fhp_A          118 DLVLLDPP  125 (187)
T ss_dssp             EEEEECCC
T ss_pred             CEEEECCC
Confidence            99998877

>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38

Probab=96.76  E-value=0.0028  Score=64.24  Aligned_cols=86  Identities=10%  Similarity=0.021  Sum_probs=61.8

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 008149          442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  521 (576)
Q Consensus       442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~D  521 (576)
                      .+.+|||+.||.||.+..+....-.-..|+++|+++...+..+.+....+.....+..+|+.++..        ..+.||
T Consensus       118 ~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~~~v~~~~~D~~~~~~--------~~~~fD  189 (315)
T 1ixk_A          118 PGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGE--------LNVEFD  189 (315)
T ss_dssp             TTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGG--------GCCCEE
T ss_pred             CCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCCCeEEEEECChhhccc--------ccccCC
Confidence            467899999999999988876521112478999999998888877654433233355677766542        125799


Q ss_pred             EEEecCCCCCcccc
Q 008149          522 FVICQNSVPQIPNS  535 (576)
Q Consensus       522 LVIGGpPCQ~FS~a  535 (576)
                      +|+.-+||.+....
T Consensus       190 ~Il~d~Pcsg~g~~  203 (315)
T 1ixk_A          190 KILLDAPCTGSGTI  203 (315)
T ss_dssp             EEEEECCTTSTTTC
T ss_pred             EEEEeCCCCCcccc
Confidence            99999999887643

>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}

Probab=96.74  E-value=0.0057  Score=62.40  Aligned_cols=80  Identities=15%  Similarity=0.114  Sum_probs=58.2

Q ss_pred             CCCcccccCCCCChhHHHHHHcC-CceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 008149          442 GGLTMLSVFSGIGGAEVTLHRLG-IKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI  520 (576)
Q Consensus       442 ~~l~VLsLFSGiGG~slGL~~aG-i~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~  520 (576)
                      .+.+|||+|||.|++.+-+...+ -. ..++++|+|+.+.+..+.+....+.....+..+|+.++..        ..+.+
T Consensus       203 ~~~~vLD~gcGsG~~~ie~a~~~~~~-~~v~g~Di~~~~i~~a~~n~~~~g~~~i~~~~~D~~~~~~--------~~~~~  273 (354)
T 3tma_A          203 PGMRVLDPFTGSGTIALEAASTLGPT-SPVYAGDLDEKRLGLAREAALASGLSWIRFLRADARHLPR--------FFPEV  273 (354)
T ss_dssp             TTCCEEESSCTTSHHHHHHHHHHCTT-SCEEEEESCHHHHHHHHHHHHHTTCTTCEEEECCGGGGGG--------TCCCC
T ss_pred             CCCEEEeCCCCcCHHHHHHHHhhCCC-ceEEEEECCHHHHHHHHHHHHHcCCCceEEEeCChhhCcc--------ccCCC
Confidence            46789999999999988777654 11 2378999999999998888765543223356678776542        12468


Q ss_pred             cEEEecCCCC
Q 008149          521 DFVICQNSVP  530 (576)
Q Consensus       521 DLVIGGpPCQ  530 (576)
                      |+|+.-|||-
T Consensus       274 D~Ii~npPyg  283 (354)
T 3tma_A          274 DRILANPPHG  283 (354)
T ss_dssp             SEEEECCCSC
T ss_pred             CEEEECCCCc
Confidence            9999999983

>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A

Probab=96.74  E-value=0.0025  Score=67.11  Aligned_cols=38  Identities=13%  Similarity=0.112  Sum_probs=32.9

Q ss_pred             hhhhhHHHhcCCCChHHHHHHHHHhCCCCcHHHHHHHHHH
Q 008149           16 HIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITA   55 (576)
Q Consensus        16 ~s~~r~~li~MGFs~e~V~kAIqe~Ge~~~~~~Ile~Ll~   55 (576)
                      ..+....|++|||+++.|.+||...+. | .+.=+|||++
T Consensus       168 ~~~~i~~l~~MGf~~~~~~~AL~a~~n-n-~~~A~e~L~~  205 (368)
T 1oqy_A          168 YETMLTEIMSMGYERERVVAALRASYN-N-PHRAVEYLLT  205 (368)
T ss_dssp             HHHHHHHHHTTTCCSHHHHHHHHHSCS-S-TTHHHHTTTT
T ss_pred             hHHHHHHHHHcCCCHHHHHHHHHHcCC-C-HHHHHHHHHh
Confidence            566789999999999999999999887 5 6777888874

>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1

Probab=96.73  E-value=0.0013  Score=53.01  Aligned_cols=39  Identities=26%  Similarity=0.404  Sum_probs=34.8

Q ss_pred             hHHHHHHHhcCCCHHHHHHHHHHhCCCCChhhhhHhHhhcc
Q 008149           89 MEITLQLLEMGFSENQVSLAIEKFGSKTPISELADKIFSGQ  129 (576)
Q Consensus        89 ~~k~~~L~~MGFseeEas~AI~r~G~da~i~eLvD~I~Aaq  129 (576)
                      .+.+..|+.|||++++|..||..+|.+  |+.-+|-||+-.
T Consensus        20 ~e~V~~LvsMGFs~~qA~kALKat~~N--vErAaDWLFSH~   58 (63)
T 1wgn_A           20 RQCVETVVNMGYSYECVLRAMKKKGEN--IEQILDYLFAHS   58 (63)
T ss_dssp             HHHHHHHHHHHCCHHHHHHHHHHHCSC--HHHHHHHHHHHS
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHcCCC--HHHHHHHHHhCC
Confidence            356779999999999999999999987  999999999743

>3av4_A DNA (cytosine-5)-methyltransferase 1; CXXC-type zinc finger/C5-methyltransferase family; HET: DNA; 2.75A {Mus musculus} PDB: 3av5_A* 3av6_A*

Probab=96.71  E-value=0.0024  Score=76.93  Aligned_cols=50  Identities=18%  Similarity=0.252  Sum_probs=39.9

Q ss_pred             CCCCccccccccccchh----hhHhhhhhh----ccCCceeeccccc-Ccccccccccc
Q 008149          247 AQPPYFFYGNVVDVSID----CWVKMSHFL----YSLEPEFVNSQYF-SALSRREGYLH  296 (576)
Q Consensus       247 ~~ppfF~~eNV~~~~~~----~w~~Is~fL----~~i~Pe~vds~~f-saa~R~R~y~h  296 (576)
                      .+|.||++|||..+-..    .+..|.+.|    |.+...++||..| .||+|.|.|+=
T Consensus       971 ~rPk~fv~ENV~glls~~~g~~~~~il~~L~~lGY~v~~~vLnA~dyGVPQ~R~Rvfiv 1029 (1330)
T 3av4_A          971 YRPRFFLLENVRNFVSYRRSMVLKLTLRCLVRMGYQCTFGVLQAGQYGVAQTRRRAIIL 1029 (1330)
T ss_dssp             HCCSEEEEEEEGGGGTTTTTHHHHHHHHHHHHHTCEEEEEEEEGGGGSCSBCCEEEEEE
T ss_pred             hcCcEEEEeccHHHhccCccHHHHHHHHHHHhcCCeeeEEEecHHHcCCCccccEEEEE
Confidence            47999999999988532    455555544    6788899999999 99999999963

>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*

Probab=96.70  E-value=0.0028  Score=67.47  Aligned_cols=78  Identities=19%  Similarity=0.308  Sum_probs=59.6

Q ss_pred             CCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 008149          441 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI  520 (576)
Q Consensus       441 ~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~  520 (576)
                      ..+-+|||||||.|.+++.|.+.|.   -|+++|+++.+.+..+.+...++.. ..+..+|+.++..+          .|
T Consensus       289 ~~~~~VLDlgcG~G~~sl~la~~~~---~V~gvD~s~~ai~~A~~n~~~ngl~-v~~~~~d~~~~~~~----------~f  354 (425)
T 2jjq_A          289 VEGEKILDMYSGVGTFGIYLAKRGF---NVKGFDSNEFAIEMARRNVEINNVD-AEFEVASDREVSVK----------GF  354 (425)
T ss_dssp             CCSSEEEEETCTTTHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHHTCC-EEEEECCTTTCCCT----------TC
T ss_pred             CCCCEEEEeeccchHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHHcCCc-EEEEECChHHcCcc----------CC
Confidence            4567899999999999999988764   4789999999998888776544333 34566787765421          58


Q ss_pred             cEEEecCCCCCc
Q 008149          521 DFVICQNSVPQI  532 (576)
Q Consensus       521 DLVIGGpPCQ~F  532 (576)
                      |+|+.-||..+.
T Consensus       355 D~Vv~dPPr~g~  366 (425)
T 2jjq_A          355 DTVIVDPPRAGL  366 (425)
T ss_dssp             SEEEECCCTTCS
T ss_pred             CEEEEcCCccch
Confidence            999999986543

>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*

Probab=96.69  E-value=0.0048  Score=63.98  Aligned_cols=80  Identities=19%  Similarity=0.125  Sum_probs=58.8

Q ss_pred             CCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCC-CCccccccccccChhhHHHhhhccCC
Q 008149          441 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQT-GELVQIEDIQALTTKKFESLIHKLGS  519 (576)
Q Consensus       441 ~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~-g~l~~~~DI~~lt~~~Ie~l~~~~g~  519 (576)
                      +.+.+|||++||.|++.+.+...|.. ..++++|+|+.+.+..+.+....+.. ...+..+|+.++...        .+.
T Consensus       216 ~~~~~vLD~gCGsG~~~i~~a~~~~~-~~v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~~D~~~~~~~--------~~~  286 (373)
T 3tm4_A          216 LDGGSVLDPMCGSGTILIELALRRYS-GEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDATQLSQY--------VDS  286 (373)
T ss_dssp             CCSCCEEETTCTTCHHHHHHHHTTCC-SCEEEEESCHHHHHHHHHHHHHTTCGGGCEEEECCGGGGGGT--------CSC
T ss_pred             CCCCEEEEccCcCcHHHHHHHHhCCC-CeEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhhCCcc--------cCC
Confidence            45678999999999999998888752 14789999999998888876544321 123456777765421        257


Q ss_pred             ccEEEecCCC
Q 008149          520 IDFVICQNSV  529 (576)
Q Consensus       520 ~DLVIGGpPC  529 (576)
                      +|+|+.-||.
T Consensus       287 fD~Ii~npPy  296 (373)
T 3tm4_A          287 VDFAISNLPY  296 (373)
T ss_dssp             EEEEEEECCC
T ss_pred             cCEEEECCCC
Confidence            9999998885

>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*

Probab=96.66  E-value=0.002  Score=68.28  Aligned_cols=80  Identities=9%  Similarity=0.015  Sum_probs=55.5

Q ss_pred             CCCcccccCCCCChhHHHHHHc--CCceeeEEEeeCCHHHHHHHHHHhhhcCCCC--CccccccccccChhhHHHhhh-c
Q 008149          442 GGLTMLSVFSGIGGAEVTLHRL--GIKLKGVISIETSETNRRILKRWWESSGQTG--ELVQIEDIQALTTKKFESLIH-K  516 (576)
Q Consensus       442 ~~l~VLsLFSGiGG~slGL~~a--Gi~~k~vvavEid~~a~~t~k~~~~~tn~~g--~l~~~~DI~~lt~~~Ie~l~~-~  516 (576)
                      .+.+|||||||+|++++-+...  |.  .-|++||+++.+.+..+.|-..++...  ..++.+|+.++        .. .
T Consensus        52 ~g~~VLDlfaGtG~~sl~aa~~~~ga--~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~--------l~~~  121 (392)
T 3axs_A           52 RPVKVADPLSASGIRAIRFLLETSCV--EKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFF--------LRKE  121 (392)
T ss_dssp             SCEEEEESSCTTSHHHHHHHHHCSCE--EEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHH--------HHSC
T ss_pred             CCCEEEECCCcccHHHHHHHHhCCCC--CEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHH--------HHHh
Confidence            3678999999999998866552  43  458999999999999998876443221  22344554432        22 1


Q ss_pred             -cCCccEEEecCCCCC
Q 008149          517 -LGSIDFVICQNSVPQ  531 (576)
Q Consensus       517 -~g~~DLVIGGpPCQ~  531 (576)
                       .+.||+|+--|||..
T Consensus       122 ~~~~fD~V~lDP~g~~  137 (392)
T 3axs_A          122 WGFGFDYVDLDPFGTP  137 (392)
T ss_dssp             CSSCEEEEEECCSSCC
T ss_pred             hCCCCcEEEECCCcCH
Confidence             247999999988763

>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}

Probab=96.63  E-value=0.0021  Score=64.84  Aligned_cols=100  Identities=16%  Similarity=0.064  Sum_probs=62.9

Q ss_pred             HHhhhhhccc--cchhhhccccccCCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCC
Q 008149          418 ESLRHCFQTD--TLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGE  495 (576)
Q Consensus       418 k~Lg~sf~vd--tv~~~lsvLK~~f~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~  495 (576)
                      |.+|..|-++  .+...+..+..  ..+-+|||+.||.|.++..|.+.|.   -|+++|+|+......+.+....+....
T Consensus        18 k~~Gq~fl~~~~i~~~i~~~~~~--~~~~~VLDiG~G~G~lt~~La~~~~---~v~~vDi~~~~~~~a~~~~~~~~~~~v   92 (299)
T 2h1r_A           18 YFQGQHLLKNPGILDKIIYAAKI--KSSDIVLEIGCGTGNLTVKLLPLAK---KVITIDIDSRMISEVKKRCLYEGYNNL   92 (299)
T ss_dssp             -----CEECCHHHHHHHHHHHCC--CTTCEEEEECCTTSTTHHHHTTTSS---EEEEECSCHHHHHHHHHHHHHTTCCCE
T ss_pred             hccccceecCHHHHHHHHHhcCC--CCcCEEEEEcCcCcHHHHHHHhcCC---EEEEEECCHHHHHHHHHHHHHcCCCce
Confidence            4456666433  33444444321  3467899999999999999988774   478999999998888876543322223


Q ss_pred             ccccccccccChhhHHHhhhccCCccEEEecCCCCCc
Q 008149          496 LVQIEDIQALTTKKFESLIHKLGSIDFVICQNSVPQI  532 (576)
Q Consensus       496 l~~~~DI~~lt~~~Ie~l~~~~g~~DLVIGGpPCQ~F  532 (576)
                      .++.+|+.++.          ++.+|+|++-+|++..
T Consensus        93 ~~~~~D~~~~~----------~~~~D~Vv~n~py~~~  119 (299)
T 2h1r_A           93 EVYEGDAIKTV----------FPKFDVCTANIPYKIS  119 (299)
T ss_dssp             EC----CCSSC----------CCCCSEEEEECCGGGH
T ss_pred             EEEECchhhCC----------cccCCEEEEcCCcccc
Confidence            35667877654          2468999999997753

>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*

Probab=96.62  E-value=0.0035  Score=61.44  Aligned_cols=82  Identities=9%  Similarity=0.029  Sum_probs=58.2

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 008149          442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  521 (576)
Q Consensus       442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~D  521 (576)
                      .+.+|||+.||.|++.+.+...- +-..|+++|+++.+.+..+.+....+.....+..+|+.+.-         ..+.||
T Consensus       109 ~~~~vLDlG~GsG~~~~~la~~~-~~~~v~~vD~s~~~l~~a~~n~~~~~~~~v~~~~~d~~~~~---------~~~~fD  178 (276)
T 2b3t_A          109 QPCRILDLGTGTGAIALALASER-PDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSAL---------AGQQFA  178 (276)
T ss_dssp             SCCEEEEETCTTSHHHHHHHHHC-TTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGGG---------TTCCEE
T ss_pred             CCCEEEEecCCccHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEcchhhhc---------ccCCcc
Confidence            45789999999999999887541 11247899999999998887765433222334556665421         025799


Q ss_pred             EEEecCCCCCcc
Q 008149          522 FVICQNSVPQIP  533 (576)
Q Consensus       522 LVIGGpPCQ~FS  533 (576)
                      +|+.-|||.+.+
T Consensus       179 ~Iv~npPy~~~~  190 (276)
T 2b3t_A          179 MIVSNPPYIDEQ  190 (276)
T ss_dssp             EEEECCCCBCTT
T ss_pred             EEEECCCCCCcc
Confidence            999999998764

>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1

Probab=96.60  E-value=0.0022  Score=51.64  Aligned_cols=38  Identities=21%  Similarity=0.323  Sum_probs=34.7

Q ss_pred             hhhHHHhcCCCChHHHHHHHHHhCCCCcHHHHHHHHHHh
Q 008149           18 EKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAA   56 (576)
Q Consensus        18 ~~r~~li~MGFs~e~V~kAIqe~Ge~~~~~~Ile~Ll~~   56 (576)
                      +...+|++|||+.+.+.+|+...|..+ ++.-+++|+..
T Consensus        11 ~~v~~L~~MGF~~~~a~~AL~~t~~~n-ve~A~ewLl~~   48 (64)
T 1whc_A           11 TALESLIEMGFPRGRAEKALALTGNQG-IEAAMDWLMEH   48 (64)
T ss_dssp             CHHHHHHTTTCCHHHHHHHHHHHTSCC-HHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHhcCCC-HHHHHHHHHhC
Confidence            477999999999999999999998777 99999999975

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*

Probab=96.60  E-value=0.0033  Score=57.10  Aligned_cols=84  Identities=13%  Similarity=0.123  Sum_probs=56.9

Q ss_pred             ccccCCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhh
Q 008149          436 LKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIH  515 (576)
Q Consensus       436 LK~~f~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~  515 (576)
                      ++...+.+.+|||+.||.|.++..|.+.|.   .|+++|+++.+.+..+.+....+.....++.+|+..+..     +. 
T Consensus        16 l~~~~~~~~~vLDiGcG~G~~~~~la~~~~---~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~~~~~l~~-----~~-   86 (185)
T 3mti_A           16 LAEVLDDESIVVDATMGNGNDTAFLAGLSK---KVYAFDVQEQALGKTSQRLSDLGIENTELILDGHENLDH-----YV-   86 (185)
T ss_dssp             HHTTCCTTCEEEESCCTTSHHHHHHHTTSS---EEEEEESCHHHHHHHHHHHHHHTCCCEEEEESCGGGGGG-----TC-
T ss_pred             HHHhCCCCCEEEEEcCCCCHHHHHHHHhCC---EEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCcHHHHHh-----hc-
Confidence            445556678999999999999999988865   378999999998888877654332212233355544321     11 


Q ss_pred             ccCCccEEEecCCC
Q 008149          516 KLGSIDFVICQNSV  529 (576)
Q Consensus       516 ~~g~~DLVIGGpPC  529 (576)
                       .+.||+|+..++.
T Consensus        87 -~~~fD~v~~~~~~   99 (185)
T 3mti_A           87 -REPIRAAIFNLGY   99 (185)
T ss_dssp             -CSCEEEEEEEEC-
T ss_pred             -cCCcCEEEEeCCC
Confidence             2579999876543

>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38

Probab=96.60  E-value=0.004  Score=63.52  Aligned_cols=88  Identities=10%  Similarity=0.154  Sum_probs=60.9

Q ss_pred             CCCcccccCCCCChhHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 008149          442 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI  520 (576)
Q Consensus       442 ~~l~VLsLFSGiGG~slGL~~a-Gi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~  520 (576)
                      .+-+|||++||.||.++.+..+ +=. ..|+++|+++...+.++.+....+.....+..+|..++....     ..++.|
T Consensus       102 ~g~~VLDlcaG~G~kt~~la~~~~~~-g~V~a~D~~~~~l~~~~~n~~r~g~~~v~~~~~D~~~~~~~~-----~~~~~f  175 (309)
T 2b9e_A          102 PGSHVIDACAAPGNKTSHLAALLKNQ-GKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSD-----PRYHEV  175 (309)
T ss_dssp             TTCEEEESSCTTCHHHHHHHHHHTTC-SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTTC-----GGGTTE
T ss_pred             CCCEEEEeCCChhHHHHHHHHHhCCC-CEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCChHhcCccc-----cccCCC
Confidence            4678999999999999887653 211 248999999999999988776543323335567877765321     112579


Q ss_pred             cEEEecCCCCCcccc
Q 008149          521 DFVICQNSVPQIPNS  535 (576)
Q Consensus       521 DLVIGGpPCQ~FS~a  535 (576)
                      |.|+--+||.++...
T Consensus       176 D~Vl~D~PcSg~G~~  190 (309)
T 2b9e_A          176 HYILLDPSCSGSGMP  190 (309)
T ss_dssp             EEEEECCCCCC----
T ss_pred             CEEEEcCCcCCCCCC
Confidence            999999999987753

>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1

Probab=96.60  E-value=0.0024  Score=53.04  Aligned_cols=40  Identities=23%  Similarity=0.376  Sum_probs=35.6

Q ss_pred             hhHHHHHHHhcCCCHHHHHHHHHHhCCCCChhhhhHhHhhcc
Q 008149           88 TMEITLQLLEMGFSENQVSLAIEKFGSKTPISELADKIFSGQ  129 (576)
Q Consensus        88 ~~~k~~~L~~MGFseeEas~AI~r~G~da~i~eLvD~I~Aaq  129 (576)
                      ..+++..|+.|||++++|..||.+|+.|  ++.-+++|+..+
T Consensus        29 ~ee~I~~L~eMGF~r~~a~~AL~~~~~n--ve~Ave~Ll~~~   68 (73)
T 1vg5_A           29 SEEQIQKLVAMGFDRTQVEVALAAADDD--LTVAVEILMSQS   68 (73)
T ss_dssp             CHHHHHHHHTTTCCHHHHHHHHHHHTSC--HHHHHHHHHTCS
T ss_pred             cHHHHHHHHHcCCCHHHHHHHHHHhCCC--HHHHHHHHHHCC
Confidence            3468899999999999999999999975  888899999876

>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54

Probab=96.60  E-value=0.0041  Score=59.74  Aligned_cols=86  Identities=13%  Similarity=0.030  Sum_probs=55.9

Q ss_pred             CCCcccccCCCCChhHHHHHHc--CCceeeEEEeeCCHHHHHHHHHHhhhcCCCC-CccccccccccChhhHHHhhhc-c
Q 008149          442 GGLTMLSVFSGIGGAEVTLHRL--GIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHK-L  517 (576)
Q Consensus       442 ~~l~VLsLFSGiGG~slGL~~a--Gi~~k~vvavEid~~a~~t~k~~~~~tn~~g-~l~~~~DI~~lt~~~Ie~l~~~-~  517 (576)
                      .+.+|||+.||.|++.+.+...  +.   .|+++|+++.+.+..+.+....+... ..++.+|+.+.-.+.+.   .. -
T Consensus        65 ~~~~vLDlG~G~G~~~~~la~~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~---~~~~  138 (254)
T 2h00_A           65 TLRRGIDIGTGASCIYPLLGATLNGW---YFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALK---EESE  138 (254)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHHCC---EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTST---TCCS
T ss_pred             CCCEEEEeCCChhHHHHHHHHhCCCC---eEEEEECCHHHHHHHHHHHHHcCCCccEEEEEcchhhhhhhhhh---cccC
Confidence            4678999999999988776654  43   47899999999888887765443222 23456776652111111   00 1


Q ss_pred             CCccEEEecCCCCCcc
Q 008149          518 GSIDFVICQNSVPQIP  533 (576)
Q Consensus       518 g~~DLVIGGpPCQ~FS  533 (576)
                      +.||+|+..||+-...
T Consensus       139 ~~fD~i~~npp~~~~~  154 (254)
T 2h00_A          139 IIYDFCMCNPPFFANQ  154 (254)
T ss_dssp             CCBSEEEECCCCC---
T ss_pred             CcccEEEECCCCccCc
Confidence            3699999999987554

>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}

Probab=96.56  E-value=0.002  Score=58.92  Aligned_cols=87  Identities=14%  Similarity=0.043  Sum_probs=47.3

Q ss_pred             CCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 008149          441 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI  520 (576)
Q Consensus       441 ~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~  520 (576)
                      +.+.+|||+.||.|.+...+.+.+-. ..++++|+++.+.+..+.+....+. ...+..+|+.+    .+.......+.|
T Consensus        29 ~~~~~vLDiG~G~G~~~~~l~~~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~----~~~~~~~~~~~f  102 (215)
T 4dzr_A           29 PSGTRVIDVGTGSGCIAVSIALACPG-VSVTAVDLSMDALAVARRNAERFGA-VVDWAAADGIE----WLIERAERGRPW  102 (215)
T ss_dssp             CTTEEEEEEESSBCHHHHHHHHHCTT-EEEEEEECC--------------------CCHHHHHH----HHHHHHHTTCCB
T ss_pred             CCCCEEEEecCCHhHHHHHHHHhCCC-CeEEEEECCHHHHHHHHHHHHHhCC-ceEEEEcchHh----hhhhhhhccCcc
Confidence            45789999999999999999888532 2478999999988777665432211 12234556554    111111123689


Q ss_pred             cEEEecCCCCCcc
Q 008149          521 DFVICQNSVPQIP  533 (576)
Q Consensus       521 DLVIGGpPCQ~FS  533 (576)
                      |+|+..+|+-...
T Consensus       103 D~i~~npp~~~~~  115 (215)
T 4dzr_A          103 HAIVSNPPYIPTG  115 (215)
T ss_dssp             SEEEECCCCCC--
T ss_pred             cEEEECCCCCCCc
Confidence            9999999986544

>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*

Probab=96.53  E-value=0.0051  Score=61.47  Aligned_cols=83  Identities=17%  Similarity=0.223  Sum_probs=60.0

Q ss_pred             CCCcccccCCCCChhHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHhhhcCCCC-CccccccccccChhhHHHhhhccCC
Q 008149          442 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGS  519 (576)
Q Consensus       442 ~~l~VLsLFSGiGG~slGL~~a-Gi~~k~vvavEid~~a~~t~k~~~~~tn~~g-~l~~~~DI~~lt~~~Ie~l~~~~g~  519 (576)
                      .+.+|||+.||.|.+.+.+... +.   .|+++|+++.+.+..+.+....+... ..++.+|+.+.-.       ..++.
T Consensus       123 ~~~~vLDlG~GsG~~~~~la~~~~~---~v~~vDis~~al~~A~~n~~~~~l~~~v~~~~~D~~~~~~-------~~f~~  192 (284)
T 1nv8_A          123 GIKTVADIGTGSGAIGVSVAKFSDA---IVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPFK-------EKFAS  192 (284)
T ss_dssp             TCCEEEEESCTTSHHHHHHHHHSSC---EEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGGG-------GGTTT
T ss_pred             CCCEEEEEeCchhHHHHHHHHCCCC---EEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcchhhcc-------cccCC
Confidence            3468999999999999998887 43   47899999999998888765443222 2345677765211       12344


Q ss_pred             ccEEEecCCCCCccc
Q 008149          520 IDFVICQNSVPQIPN  534 (576)
Q Consensus       520 ~DLVIGGpPCQ~FS~  534 (576)
                      +|+|+.-|||-+.+.
T Consensus       193 ~D~IvsnPPyi~~~~  207 (284)
T 1nv8_A          193 IEMILSNPPYVKSSA  207 (284)
T ss_dssp             CCEEEECCCCBCGGG
T ss_pred             CCEEEEcCCCCCccc
Confidence            499999999988763

>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1

Probab=96.53  E-value=0.0023  Score=48.85  Aligned_cols=39  Identities=13%  Similarity=0.290  Sum_probs=33.4

Q ss_pred             hhHHHHHHHhcCCCHHHHHHHHHHhCCCCChhhhhHhHhhc
Q 008149           88 TMEITLQLLEMGFSENQVSLAIEKFGSKTPISELADKIFSG  128 (576)
Q Consensus        88 ~~~k~~~L~~MGFseeEas~AI~r~G~da~i~eLvD~I~Aa  128 (576)
                      ..+++..|+.|||++++|..|+.+|+.+  ++.-+++++..
T Consensus         8 ~~~~i~~L~~MGF~~~~a~~AL~~~~~n--~e~A~e~L~~g   46 (49)
T 1ify_A            8 YETMLTEIMSMGYERERVVAALRASYNN--PHRAVEYLLTG   46 (49)
T ss_dssp             HHHHHHHHHHTTCCHHHHHHHHHTTTSC--SHHHHHHHHHC
T ss_pred             CHHHHHHHHHcCCCHHHHHHHHHHhCCC--HHHHHHHHHhC
Confidence            3468889999999999999999999975  77778888764

>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1

Probab=96.52  E-value=0.0021  Score=50.41  Aligned_cols=40  Identities=13%  Similarity=0.178  Sum_probs=35.4

Q ss_pred             hhhhHHHhcCCCChHHHHHHHHHhCCCCcHHHHHHHHHHhh
Q 008149           17 IEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQ   57 (576)
Q Consensus        17 s~~r~~li~MGFs~e~V~kAIqe~Ge~~~~~~Ile~Ll~~q   57 (576)
                      +.-...|+.|||++++|.+|+++.|... ++.-+|+|+.++
T Consensus        10 ~qmlq~L~eMGFd~erae~Alk~Tg~~G-le~AmewL~k~~   49 (54)
T 2cos_A           10 RQMLQELVNAGCDQEMAGRALKQTGSRS-IEAALEYISKMS   49 (54)
T ss_dssp             HHHHHHHHHHHCCHHHHHHHHHHHTSCC-HHHHHHHHHHHS
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHhCccc-HHHHHHHHHHhc
Confidence            3446789999999999999999999988 999999999763

>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1

Probab=96.48  E-value=0.0036  Score=46.13  Aligned_cols=37  Identities=22%  Similarity=0.287  Sum_probs=31.2

Q ss_pred             hHHHHHHHhcCCCHHHHHHHHHHhCCCCChhhhhHhHhh
Q 008149           89 MEITLQLLEMGFSENQVSLAIEKFGSKTPISELADKIFS  127 (576)
Q Consensus        89 ~~k~~~L~~MGFseeEas~AI~r~G~da~i~eLvD~I~A  127 (576)
                      .+++..|+.|||++++|..|+..|+.  +++.-+++++.
T Consensus         5 e~~i~~L~~MGF~~~~a~~AL~~~~~--n~e~A~~~L~~   41 (43)
T 2g3q_A            5 SLAVEELSGMGFTEEEAHNALEKCNW--DLEAATNFLLD   41 (43)
T ss_dssp             HHHHHHHHTTTSCHHHHHHHHHHHTS--CHHHHHHHHHT
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHhCc--CHHHHHHHHHc
Confidence            35788999999999999999999976  47777777764

>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46

Probab=96.45  E-value=0.0055  Score=55.23  Aligned_cols=79  Identities=15%  Similarity=0.245  Sum_probs=55.1

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCC-CccccccccccChhhHHHhhhccCCc
Q 008149          442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGSI  520 (576)
Q Consensus       442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g-~l~~~~DI~~lt~~~Ie~l~~~~g~~  520 (576)
                      .+-+|||+.||.|++...+.+.|.  ..|+++|+++.+.+..+.+....+... ..+..+|+.+..    .   ...+.|
T Consensus        31 ~~~~vLDlGcG~G~~~~~l~~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~----~---~~~~~f  101 (177)
T 2esr_A           31 NGGRVLDLFAGSGGLAIEAVSRGM--SAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAI----D---CLTGRF  101 (177)
T ss_dssp             CSCEEEEETCTTCHHHHHHHHTTC--CEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHH----H---HBCSCE
T ss_pred             CCCeEEEeCCCCCHHHHHHHHcCC--CEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHhH----H---hhcCCC
Confidence            467899999999999998888874  358899999999988887765432211 123445554321    1   112569


Q ss_pred             cEEEecCCC
Q 008149          521 DFVICQNSV  529 (576)
Q Consensus       521 DLVIGGpPC  529 (576)
                      |+|+..+|.
T Consensus       102 D~i~~~~~~  110 (177)
T 2esr_A          102 DLVFLDPPY  110 (177)
T ss_dssp             EEEEECCSS
T ss_pred             CEEEECCCC
Confidence            999988774

>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.42  E-value=0.0021  Score=48.37  Aligned_cols=37  Identities=14%  Similarity=0.200  Sum_probs=33.0

Q ss_pred             hhhhhHHHhcCCCChHHHHHHHHHhCCCCcHHHHHHHHHH
Q 008149           16 HIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITA   55 (576)
Q Consensus        16 ~s~~r~~li~MGFs~e~V~kAIqe~Ge~~~~~~Ile~Ll~   55 (576)
                      ..+...+|++|||+++.+.+|+...|  + ++.-+++|+.
T Consensus         9 ~~~~v~~L~~MGF~~~~a~~AL~~~~--n-~e~A~~~L~~   45 (47)
T 2ekk_A            9 NQQQLQQLMDMGFTREHAMEALLNTS--T-MEQATEYLLT   45 (47)
T ss_dssp             CHHHHHHHHHHHCCHHHHHHHHHHSC--S-HHHHHHHHHT
T ss_pred             CHHHHHHHHHcCCCHHHHHHHHHHcC--C-HHHHHHHHHc
Confidence            34578999999999999999999996  5 8999999985

>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.40  E-value=0.0026  Score=47.92  Aligned_cols=36  Identities=17%  Similarity=0.354  Sum_probs=31.6

Q ss_pred             hHHHHHHHhcCCCHHHHHHHHHHhCCCCChhhhhHhHhh
Q 008149           89 MEITLQLLEMGFSENQVSLAIEKFGSKTPISELADKIFS  127 (576)
Q Consensus        89 ~~k~~~L~~MGFseeEas~AI~r~G~da~i~eLvD~I~A  127 (576)
                      .+++..|+.|||++++|..|+..+|   .++.-++.|+.
T Consensus        10 ~~~v~~L~~MGF~~~~a~~AL~~~~---n~e~A~~~L~~   45 (47)
T 2ekk_A           10 QQQLQQLMDMGFTREHAMEALLNTS---TMEQATEYLLT   45 (47)
T ss_dssp             HHHHHHHHHHHCCHHHHHHHHHHSC---SHHHHHHHHHT
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHcC---CHHHHHHHHHc
Confidence            3578899999999999999999997   58888888874

>2crn_A Ubash3A protein; compact three-helix bundle, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1

Probab=96.40  E-value=0.0031  Score=50.93  Aligned_cols=37  Identities=24%  Similarity=0.307  Sum_probs=34.0

Q ss_pred             hhHHHhcCCCChHHHHHHHHHhCCCCcHHHHHHHHHHh
Q 008149           19 KRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAA   56 (576)
Q Consensus        19 ~r~~li~MGFs~e~V~kAIqe~Ge~~~~~~Ile~Ll~~   56 (576)
                      ...+|++|||+.+.+.||+...|..+ ++.=+++|++.
T Consensus        12 ~v~~L~~MGF~~~~a~~AL~~t~n~~-~e~A~~wL~~h   48 (64)
T 2crn_A           12 LLEPLLAMGFPVHTALKALAATGRKT-AEEALAWLHDH   48 (64)
T ss_dssp             SHHHHHHTSCCHHHHHHHHHHHTSCC-HHHHHHHHHHH
T ss_pred             HHHHHHHcCCCHHHHHHHHHHhCCCC-HHHHHHHHHhC
Confidence            56899999999999999999999877 99999999975

>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}

Probab=96.40  E-value=0.0031  Score=68.04  Aligned_cols=86  Identities=17%  Similarity=0.126  Sum_probs=59.7

Q ss_pred             CCCcccccCCCCChhHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 008149          442 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI  520 (576)
Q Consensus       442 ~~l~VLsLFSGiGG~slGL~~a-Gi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~  520 (576)
                      .+.+|||+.||.||.++.+..+ +=. -.|+++|+++...+.++.+....+.....+..+|..++.     ..  ..+.|
T Consensus       105 ~g~~VLDlcaGpGgkt~~lA~~~~~~-g~V~AvDis~~rl~~~~~n~~r~g~~nv~v~~~Da~~l~-----~~--~~~~F  176 (456)
T 3m4x_A          105 PGEKVLDLCAAPGGKSTQLAAQMKGK-GLLVTNEIFPKRAKILSENIERWGVSNAIVTNHAPAELV-----PH--FSGFF  176 (456)
T ss_dssp             TTCEEEESSCTTCHHHHHHHHHHTTC-SEEEEECSSHHHHHHHHHHHHHHTCSSEEEECCCHHHHH-----HH--HTTCE
T ss_pred             CCCEEEEECCCcCHHHHHHHHHcCCC-CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhh-----hh--ccccC
Confidence            4689999999999999887654 211 147899999999999888765543322223345554432     11  12579


Q ss_pred             cEEEecCCCCCcccc
Q 008149          521 DFVICQNSVPQIPNS  535 (576)
Q Consensus       521 DLVIGGpPCQ~FS~a  535 (576)
                      |+|+--+||.+....
T Consensus       177 D~Il~DaPCSg~G~~  191 (456)
T 3m4x_A          177 DRIVVDAPCSGEGMF  191 (456)
T ss_dssp             EEEEEECCCCCGGGT
T ss_pred             CEEEECCCCCCcccc
Confidence            999999999987653

>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1

Probab=96.38  E-value=0.0034  Score=47.91  Aligned_cols=38  Identities=13%  Similarity=0.112  Sum_probs=33.8

Q ss_pred             hhhhhHHHhcCCCChHHHHHHHHHhCCCCcHHHHHHHHHH
Q 008149           16 HIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITA   55 (576)
Q Consensus        16 ~s~~r~~li~MGFs~e~V~kAIqe~Ge~~~~~~Ile~Ll~   55 (576)
                      ..+...+|++|||+++.+.+|++..|. | ++.-+|+|++
T Consensus         8 ~~~~i~~L~~MGF~~~~a~~AL~~~~~-n-~e~A~e~L~~   45 (49)
T 1ify_A            8 YETMLTEIMSMGYERERVVAALRASYN-N-PHRAVEYLLT   45 (49)
T ss_dssp             HHHHHHHHHHTTCCHHHHHHHHHTTTS-C-SHHHHHHHHH
T ss_pred             CHHHHHHHHHcCCCHHHHHHHHHHhCC-C-HHHHHHHHHh
Confidence            456889999999999999999999876 5 7888999996

>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1

Probab=96.36  E-value=0.0048  Score=45.49  Aligned_cols=37  Identities=22%  Similarity=0.187  Sum_probs=32.4

Q ss_pred             hhhhHHHhcCCCChHHHHHHHHHhCCCCcHHHHHHHHHH
Q 008149           17 IEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITA   55 (576)
Q Consensus        17 s~~r~~li~MGFs~e~V~kAIqe~Ge~~~~~~Ile~Ll~   55 (576)
                      .+...+|++|||+++.+.+|++..+. + ++.=+++|+.
T Consensus         5 e~~i~~L~~MGF~~~~a~~AL~~~~~-n-~e~A~~~L~~   41 (43)
T 2g3q_A            5 SLAVEELSGMGFTEEEAHNALEKCNW-D-LEAATNFLLD   41 (43)
T ss_dssp             HHHHHHHHTTTSCHHHHHHHHHHHTS-C-HHHHHHHHHT
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHhCc-C-HHHHHHHHHc
Confidence            45778999999999999999999965 5 8888999984

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4

Probab=96.29  E-value=0.0079  Score=53.88  Aligned_cols=77  Identities=10%  Similarity=0.023  Sum_probs=55.3

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCC--CccccccccccChhhHHHhhhccCC
Q 008149          442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG--ELVQIEDIQALTTKKFESLIHKLGS  519 (576)
Q Consensus       442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g--~l~~~~DI~~lt~~~Ie~l~~~~g~  519 (576)
                      .+.+|||+.||.|.+...+.+.|.   .+.++|+++.+....+.+....+...  ..+..+|+.+...         .+.
T Consensus        52 ~~~~vLdiG~G~G~~~~~~~~~~~---~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~---------~~~  119 (194)
T 1dus_A           52 KDDDILDLGCGYGVIGIALADEVK---STTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVK---------DRK  119 (194)
T ss_dssp             TTCEEEEETCTTSHHHHHHGGGSS---EEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCT---------TSC
T ss_pred             CCCeEEEeCCCCCHHHHHHHHcCC---eEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhcccc---------cCC
Confidence            467899999999999999888864   47899999999888887665433222  2345566654321         247


Q ss_pred             ccEEEecCCCC
Q 008149          520 IDFVICQNSVP  530 (576)
Q Consensus       520 ~DLVIGGpPCQ  530 (576)
                      +|+|+..+|..
T Consensus       120 ~D~v~~~~~~~  130 (194)
T 1dus_A          120 YNKIITNPPIR  130 (194)
T ss_dssp             EEEEEECCCST
T ss_pred             ceEEEECCCcc
Confidence            99999876643

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=96.28  E-value=0.008  Score=55.78  Aligned_cols=77  Identities=22%  Similarity=0.326  Sum_probs=56.7

Q ss_pred             CCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCC
Q 008149          440 FPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGS  519 (576)
Q Consensus       440 f~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~  519 (576)
                      .+.+.+|||+-||.|.+...+.+.|.   .+.++|+++......+.+....+ ....+..+|+.++..        ..+.
T Consensus        36 ~~~~~~vLDlG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~-~~~~~~~~d~~~~~~--------~~~~  103 (227)
T 1ve3_A           36 MKKRGKVLDLACGVGGFSFLLEDYGF---EVVGVDISEDMIRKAREYAKSRE-SNVEFIVGDARKLSF--------EDKT  103 (227)
T ss_dssp             CCSCCEEEEETCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTT-CCCEEEECCTTSCCS--------CTTC
T ss_pred             cCCCCeEEEEeccCCHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHhcC-CCceEEECchhcCCC--------CCCc
Confidence            33468999999999999999999986   47899999998888777654332 233356678776541        1147


Q ss_pred             ccEEEecCC
Q 008149          520 IDFVICQNS  528 (576)
Q Consensus       520 ~DLVIGGpP  528 (576)
                      +|+|+..++
T Consensus       104 ~D~v~~~~~  112 (227)
T 1ve3_A          104 FDYVIFIDS  112 (227)
T ss_dssp             EEEEEEESC
T ss_pred             EEEEEEcCc
Confidence            999998766

>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*

Probab=96.27  E-value=0.004  Score=65.28  Aligned_cols=80  Identities=15%  Similarity=0.120  Sum_probs=55.1

Q ss_pred             CCCcccccCCCCChhHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHhhhc---------------CCCCCcccccccccc
Q 008149          442 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESS---------------GQTGELVQIEDIQAL  505 (576)
Q Consensus       442 ~~l~VLsLFSGiGG~slGL~~a-Gi~~k~vvavEid~~a~~t~k~~~~~t---------------n~~g~l~~~~DI~~l  505 (576)
                      .+.+|||||||+|++++.+... |-  .-|+++|+++.+.+..+.+...+               +.....+..+|+.++
T Consensus        47 ~~~~VLDl~aGtG~~~l~~a~~~~~--~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~i~v~~~Da~~~  124 (378)
T 2dul_A           47 NPKIVLDALSATGIRGIRFALETPA--EEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRL  124 (378)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHSSC--SEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHH
T ss_pred             CCCEEEECCCchhHHHHHHHHhCCC--CeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCceEEEcCcHHHH
Confidence            4678999999999999887765 53  23899999999999999887543               111112233444332


Q ss_pred             ChhhHHHhhhc-cCCccEEEecCCCCC
Q 008149          506 TTKKFESLIHK-LGSIDFVICQNSVPQ  531 (576)
Q Consensus       506 t~~~Ie~l~~~-~g~~DLVIGGpPCQ~  531 (576)
                              ... .+.||+|+--|||..
T Consensus       125 --------~~~~~~~fD~I~lDP~~~~  143 (378)
T 2dul_A          125 --------MAERHRYFHFIDLDPFGSP  143 (378)
T ss_dssp             --------HHHSTTCEEEEEECCSSCC
T ss_pred             --------HHhccCCCCEEEeCCCCCH
Confidence                    211 247999999998863

>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}

Probab=96.27  E-value=0.0057  Score=65.24  Aligned_cols=80  Identities=11%  Similarity=0.078  Sum_probs=58.3

Q ss_pred             CCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhc--CCCCCccccccccccChhhHHHhhhccCCc
Q 008149          443 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESS--GQTGELVQIEDIQALTTKKFESLIHKLGSI  520 (576)
Q Consensus       443 ~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~t--n~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~  520 (576)
                      +-+||||+||+|+.++.|.+.|.   .|++||+|+.+....+.+....  +.....++.+|+.+.-.. +.     .+.|
T Consensus        94 g~~VLDLgcG~G~~al~LA~~g~---~V~~VD~s~~~l~~Ar~N~~~~~~gl~~i~~i~~Da~~~L~~-~~-----~~~f  164 (410)
T 3ll7_A           94 GTKVVDLTGGLGIDFIALMSKAS---QGIYIERNDETAVAARHNIPLLLNEGKDVNILTGDFKEYLPL-IK-----TFHP  164 (410)
T ss_dssp             TCEEEESSCSSSHHHHHHHTTCS---EEEEEESCHHHHHHHHHHHHHHSCTTCEEEEEESCGGGSHHH-HH-----HHCC
T ss_pred             CCEEEEeCCCchHHHHHHHhcCC---EEEEEECCHHHHHHHHHhHHHhccCCCcEEEEECcHHHhhhh-cc-----CCCc
Confidence            68899999999999999998885   3789999999999998887643  221223566787764211 11     1379


Q ss_pred             cEEEecCCCCC
Q 008149          521 DFVICQNSVPQ  531 (576)
Q Consensus       521 DLVIGGpPCQ~  531 (576)
                      |+|+--||=.+
T Consensus       165 DvV~lDPPrr~  175 (410)
T 3ll7_A          165 DYIYVDPARRS  175 (410)
T ss_dssp             SEEEECCEEC-
T ss_pred             eEEEECCCCcC
Confidence            99998887543

>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}

Probab=96.27  E-value=0.006  Score=59.76  Aligned_cols=89  Identities=16%  Similarity=0.086  Sum_probs=58.7

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhh---cCCCC-CccccccccccChhhHHHhhhcc
Q 008149          442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWES---SGQTG-ELVQIEDIQALTTKKFESLIHKL  517 (576)
Q Consensus       442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~---tn~~g-~l~~~~DI~~lt~~~Ie~l~~~~  517 (576)
                      .+.+||||.||.|.+.+.+.+.+-. ..|+++|+++.+....+.+...   .+... ..++.+|+.++....+.... ..
T Consensus        36 ~~~~VLDlG~G~G~~~l~la~~~~~-~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~~~~~~~~-~~  113 (260)
T 2ozv_A           36 RACRIADLGAGAGAAGMAVAARLEK-AEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRAKARVEAGL-PD  113 (260)
T ss_dssp             SCEEEEECCSSSSHHHHHHHHHCTT-EEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHHHHHHTTC-CT
T ss_pred             CCCEEEEeCChHhHHHHHHHHhCCC-CeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHhhhhhhhcc-CC
Confidence            4568999999999999988776422 3578999999999888877643   22111 23566888776322111000 12


Q ss_pred             CCccEEEecCCCCCc
Q 008149          518 GSIDFVICQNSVPQI  532 (576)
Q Consensus       518 g~~DLVIGGpPCQ~F  532 (576)
                      +.||+|+..||....
T Consensus       114 ~~fD~Vv~nPPy~~~  128 (260)
T 2ozv_A          114 EHFHHVIMNPPYNDA  128 (260)
T ss_dssp             TCEEEEEECCCC---
T ss_pred             CCcCEEEECCCCcCC
Confidence            579999999998765

>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24

Probab=96.25  E-value=0.0043  Score=62.00  Aligned_cols=100  Identities=13%  Similarity=0.064  Sum_probs=65.3

Q ss_pred             HHhhhhhccc--cchhhhccccccCCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCC-CC
Q 008149          418 ESLRHCFQTD--TLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQ-TG  494 (576)
Q Consensus       418 k~Lg~sf~vd--tv~~~lsvLK~~f~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~-~g  494 (576)
                      |.+|..|-++  .+..++..+..  ..+-+|||+-||.|.++..|.+.|.   -|+++|+|+......+......+. ..
T Consensus         4 k~~gq~fl~d~~i~~~i~~~~~~--~~~~~VLDiG~G~G~lt~~L~~~~~---~v~~vD~~~~~~~~a~~~~~~~~~~~~   78 (285)
T 1zq9_A            4 TGIGQHILKNPLIINSIIDKAAL--RPTDVVLEVGPGTGNMTVKLLEKAK---KVVACELDPRLVAELHKRVQGTPVASK   78 (285)
T ss_dssp             ----CCEECCHHHHHHHHHHTCC--CTTCEEEEECCTTSTTHHHHHHHSS---EEEEEESCHHHHHHHHHHHTTSTTGGG
T ss_pred             CCCCcCccCCHHHHHHHHHhcCC--CCCCEEEEEcCcccHHHHHHHhhCC---EEEEEECCHHHHHHHHHHHHhcCCCCc
Confidence            4456555322  33444444321  3467899999999999999998875   378999999998888776532211 11


Q ss_pred             CccccccccccChhhHHHhhhccCCccEEEecCCCCCc
Q 008149          495 ELVQIEDIQALTTKKFESLIHKLGSIDFVICQNSVPQI  532 (576)
Q Consensus       495 ~l~~~~DI~~lt~~~Ie~l~~~~g~~DLVIGGpPCQ~F  532 (576)
                      ..++.+|+.++.          ++.+|+|++..|++-.
T Consensus        79 v~~~~~D~~~~~----------~~~fD~vv~nlpy~~~  106 (285)
T 1zq9_A           79 LQVLVGDVLKTD----------LPFFDTCVANLPYQIS  106 (285)
T ss_dssp             EEEEESCTTTSC----------CCCCSEEEEECCGGGH
T ss_pred             eEEEEcceeccc----------chhhcEEEEecCcccc
Confidence            235567877653          2368999999998753

>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*

Probab=96.24  E-value=0.0077  Score=63.70  Aligned_cols=85  Identities=15%  Similarity=0.115  Sum_probs=60.9

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 008149          442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  521 (576)
Q Consensus       442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~D  521 (576)
                      .+-+||||+||.|.+++.|.+.+.   .|+++|+++.+.+..+.+....+.....++.+|+.+.-.. +   ....+.||
T Consensus       286 ~~~~VLDlgcG~G~~~~~la~~~~---~V~gvD~s~~al~~A~~n~~~~~~~~v~f~~~d~~~~l~~-~---~~~~~~fD  358 (433)
T 1uwv_A          286 PEDRVLDLFCGMGNFTLPLATQAA---SVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTK-Q---PWAKNGFD  358 (433)
T ss_dssp             TTCEEEEESCTTTTTHHHHHTTSS---EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSS-S---GGGTTCCS
T ss_pred             CCCEEEECCCCCCHHHHHHHhhCC---EEEEEeCCHHHHHHHHHHHHHcCCCceEEEECCHHHHhhh-h---hhhcCCCC
Confidence            456899999999999999988754   4789999999998888776544322334566787663211 0   00124799


Q ss_pred             EEEecCCCCCcc
Q 008149          522 FVICQNSVPQIP  533 (576)
Q Consensus       522 LVIGGpPCQ~FS  533 (576)
                      +|+.-||..+..
T Consensus       359 ~Vv~dPPr~g~~  370 (433)
T 1uwv_A          359 KVLLDPARAGAA  370 (433)
T ss_dssp             EEEECCCTTCCH
T ss_pred             EEEECCCCccHH
Confidence            999999987654

>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.23  E-value=0.0045  Score=49.50  Aligned_cols=39  Identities=26%  Similarity=0.362  Sum_probs=34.7

Q ss_pred             hHHHHHHHhcCCCHHHHHHHHHHhCCCCChhhhhHhHhhcc
Q 008149           89 MEITLQLLEMGFSENQVSLAIEKFGSKTPISELADKIFSGQ  129 (576)
Q Consensus        89 ~~k~~~L~~MGFseeEas~AI~r~G~da~i~eLvD~I~Aaq  129 (576)
                      .+++..|+.|||++++|..|+..|+.+  ++.-++.|+...
T Consensus        10 ~~~v~~L~~MGF~~~~a~~AL~~t~~n--ve~A~e~L~~~~   48 (63)
T 2dak_A           10 EDCVTTIVSMGFSRDQALKALRATNNS--LERAVDWIFSHI   48 (63)
T ss_dssp             HHHHHHHHHHTCCHHHHHHHHHHTTSC--SHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHcCCC--HHHHHHHHHhCC
Confidence            357889999999999999999999874  889999999865

>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*

Probab=96.22  E-value=0.0055  Score=66.25  Aligned_cols=86  Identities=16%  Similarity=-0.016  Sum_probs=60.9

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 008149          442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  521 (576)
Q Consensus       442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~D  521 (576)
                      .+.+|||+.||.||.+..+..+--.--.|+++|+++...+..+.+....+.. ..+..+|..++.     ..  ..+.||
T Consensus       101 ~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~~-v~~~~~Da~~l~-----~~--~~~~FD  172 (464)
T 3m6w_A          101 PGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAP-LAVTQAPPRALA-----EA--FGTYFH  172 (464)
T ss_dssp             TTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCCC-CEEECSCHHHHH-----HH--HCSCEE
T ss_pred             CCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCe-EEEEECCHHHhh-----hh--ccccCC
Confidence            4689999999999999888754111114889999999999998876654433 334456655432     11  125799


Q ss_pred             EEEecCCCCCcccc
Q 008149          522 FVICQNSVPQIPNS  535 (576)
Q Consensus       522 LVIGGpPCQ~FS~a  535 (576)
                      +|+--+||.+....
T Consensus       173 ~Il~D~PcSg~G~~  186 (464)
T 3m6w_A          173 RVLLDAPCSGEGMF  186 (464)
T ss_dssp             EEEEECCCCCGGGT
T ss_pred             EEEECCCcCCcccc
Confidence            99999999987753

>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1

Probab=96.21  E-value=0.0036  Score=50.46  Aligned_cols=37  Identities=22%  Similarity=0.342  Sum_probs=33.4

Q ss_pred             hhhHHHhcCCCChHHHHHHHHHhCCCCcHHHHHHHHHHh
Q 008149           18 EKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAA   56 (576)
Q Consensus        18 ~~r~~li~MGFs~e~V~kAIqe~Ge~~~~~~Ile~Ll~~   56 (576)
                      +....|++|||+.+.+.|||+..|. | +|..+|.|++.
T Consensus        21 e~V~~LvsMGFs~~qA~kALKat~~-N-vErAaDWLFSH   57 (63)
T 1wgn_A           21 QCVETVVNMGYSYECVLRAMKKKGE-N-IEQILDYLFAH   57 (63)
T ss_dssp             HHHHHHHHHHCCHHHHHHHHHHHCS-C-HHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHcCC-C-HHHHHHHHHhC
Confidence            4578899999999999999999988 5 89999999975

>1vek_A UBP14, ubiquitin-specific protease 14, putative; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1

Probab=96.20  E-value=0.0086  Score=50.75  Aligned_cols=40  Identities=23%  Similarity=0.194  Sum_probs=36.3

Q ss_pred             hhhhhHHHhcCCCChHHHHHHHHHhCCCCcHHHHHHHHHHh
Q 008149           16 HIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAA   56 (576)
Q Consensus        16 ~s~~r~~li~MGFs~e~V~kAIqe~Ge~~~~~~Ile~Ll~~   56 (576)
                      ..+...+|++|||+.+.+.+|+...|..+ ++.=+++|++.
T Consensus        29 ~e~~v~~L~~MGF~~~~a~~AL~~t~n~n-~e~A~ewL~~h   68 (84)
T 1vek_A           29 NEEIVAQLVSMGFSQLHCQKAAINTSNAG-VEEAMNWLLSH   68 (84)
T ss_dssp             CHHHHHHHHHHTCCHHHHHHHHHHTTTCC-HHHHHHHHHHH
T ss_pred             CHHHHHHHHHcCCCHHHHHHHHHHHcCCC-HHHHHHHHHhC
Confidence            56788999999999999999999998777 89999999975

>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.18  E-value=0.0052  Score=50.89  Aligned_cols=40  Identities=13%  Similarity=0.186  Sum_probs=35.8

Q ss_pred             hhhhhHHHhcCCCChHHHHHHHHHhCCCCcHHHHHHHHHHh
Q 008149           16 HIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAA   56 (576)
Q Consensus        16 ~s~~r~~li~MGFs~e~V~kAIqe~Ge~~~~~~Ile~Ll~~   56 (576)
                      ..+...+|++|||+++.+.+|+...|..+ ++.=+++|+..
T Consensus         9 ~e~~v~~L~~MGF~~~~a~~AL~~t~n~~-ve~A~ewL~~~   48 (74)
T 2dag_A            9 DESVIIQLVEMGFPMDACRKAVYYTGNSG-AEAAMNWVMSH   48 (74)
T ss_dssp             CHHHHHHHHHHSCCHHHHHHHHHHHTSCC-HHHHHHHHHHH
T ss_pred             CHHHHHHHHHcCCCHHHHHHHHHHhCCCC-HHHHHHHHHhC
Confidence            45578999999999999999999999766 89999999975

>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1

Probab=96.15  E-value=0.0058  Score=49.15  Aligned_cols=39  Identities=18%  Similarity=0.325  Sum_probs=35.0

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHhCCCCChhhhhHhHhhccc
Q 008149           90 EITLQLLEMGFSENQVSLAIEKFGSKTPISELADKIFSGQI  130 (576)
Q Consensus        90 ~k~~~L~~MGFseeEas~AI~r~G~da~i~eLvD~I~Aaq~  130 (576)
                      +++..|+.|||++++|..|+..|+.+  ++.-+++|+..+.
T Consensus        11 ~~I~~L~~MGF~~~~a~~AL~~~~~n--ve~A~e~L~~~~~   49 (63)
T 1wji_A           11 KALKHITEMGFSKEASRQALMDNGNN--LEAALNVLLTSNK   49 (63)
T ss_dssp             HHHHHHHTTTCCHHHHHHHHHHTTSC--HHHHHHHHHHHSS
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHhCCC--HHHHHHHHHHCCC
Confidence            57889999999999999999999974  8889999998774

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}

Probab=96.14  E-value=0.015  Score=53.81  Aligned_cols=81  Identities=19%  Similarity=0.115  Sum_probs=59.1

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 008149          442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  521 (576)
Q Consensus       442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~D  521 (576)
                      .+.+|||+-||.|.+...+.+.|.   .|+++|+++......+.+....+.....+..+|+.+....        .+.||
T Consensus        77 ~~~~vLdiG~G~G~~~~~la~~~~---~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~--------~~~~D  145 (210)
T 3lbf_A           77 PQSRVLEIGTGSGYQTAILAHLVQ---HVCSVERIKGLQWQARRRLKNLDLHNVSTRHGDGWQGWQA--------RAPFD  145 (210)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHSS---EEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGG--------GCCEE
T ss_pred             CCCEEEEEcCCCCHHHHHHHHhCC---EEEEEecCHHHHHHHHHHHHHcCCCceEEEECCcccCCcc--------CCCcc
Confidence            467899999999999999988864   4789999999988888776544333233556777654321        25799


Q ss_pred             EEEecCCCCCcc
Q 008149          522 FVICQNSVPQIP  533 (576)
Q Consensus       522 LVIGGpPCQ~FS  533 (576)
                      +|+....+..+.
T Consensus       146 ~i~~~~~~~~~~  157 (210)
T 3lbf_A          146 AIIVTAAPPEIP  157 (210)
T ss_dssp             EEEESSBCSSCC
T ss_pred             EEEEccchhhhh
Confidence            999876665443

>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}

Probab=96.14  E-value=0.0071  Score=65.41  Aligned_cols=85  Identities=9%  Similarity=0.063  Sum_probs=60.5

Q ss_pred             CCCcccccCCCCChhHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 008149          442 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI  520 (576)
Q Consensus       442 ~~l~VLsLFSGiGG~slGL~~a-Gi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~  520 (576)
                      .+.+|||++||.||.+..+..+ +-. -.|+++|+++...+.++.+....+.....+..+|..++..     .  ..+.|
T Consensus       117 ~g~~VLDl~aGpG~kt~~lA~~~~~~-g~V~avDis~~~l~~~~~n~~r~g~~nv~~~~~D~~~~~~-----~--~~~~f  188 (479)
T 2frx_A          117 APQRVMDVAAAPGSKTTQISARMNNE-GAILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGA-----A--VPEMF  188 (479)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHTTTC-SEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCCSTTHHH-----H--STTCE
T ss_pred             CCCEEEEeCCCCCHHHHHHHHhCCCC-CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCCHHHhhh-----h--ccccC
Confidence            4679999999999999887764 211 2488999999999988887654432223345566665421     0  12579


Q ss_pred             cEEEecCCCCCccc
Q 008149          521 DFVICQNSVPQIPN  534 (576)
Q Consensus       521 DLVIGGpPCQ~FS~  534 (576)
                      |+|+--+||.+...
T Consensus       189 D~Il~D~PcSg~G~  202 (479)
T 2frx_A          189 DAILLDAPCSGEGV  202 (479)
T ss_dssp             EEEEEECCCCCGGG
T ss_pred             CEEEECCCcCCccc
Confidence            99999999998764

>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E

Probab=96.10  E-value=0.0083  Score=57.76  Aligned_cols=85  Identities=13%  Similarity=0.114  Sum_probs=56.3

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhc--------CCCCCccccccccccChhhHHHh
Q 008149          442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESS--------GQTGELVQIEDIQALTTKKFESL  513 (576)
Q Consensus       442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~t--------n~~g~l~~~~DI~~lt~~~Ie~l  513 (576)
                      .+.+|||++||.|++.+.+.+.+-. ..|++||+++.+....+.+....        +.....++.+|+.+.-...+   
T Consensus        49 ~~~~vLDiGcG~G~~~~~la~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~~~~---  124 (246)
T 2vdv_E           49 KKVTIADIGCGFGGLMIDLSPAFPE-DLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFF---  124 (246)
T ss_dssp             CCEEEEEETCTTSHHHHHHHHHSTT-SEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGGGTS---
T ss_pred             CCCEEEEEcCCCCHHHHHHHHhCCC-CCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHHHhc---
Confidence            4678999999999999999887632 24789999999887776654322        22222345677765221111   


Q ss_pred             hhccCCccEEEecCCCCCc
Q 008149          514 IHKLGSIDFVICQNSVPQI  532 (576)
Q Consensus       514 ~~~~g~~DLVIGGpPCQ~F  532 (576)
                        ..+.+|.|+--+|..-+
T Consensus       125 --~~~~~d~v~~~~p~p~~  141 (246)
T 2vdv_E          125 --EKGQLSKMFFCFPDPHF  141 (246)
T ss_dssp             --CTTCEEEEEEESCCCC-
T ss_pred             --cccccCEEEEECCCccc
Confidence              12578998877776443

>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1

Probab=96.08  E-value=0.0061  Score=50.54  Aligned_cols=39  Identities=21%  Similarity=0.302  Sum_probs=34.9

Q ss_pred             hhhhhHHHhcCCCChHHHHHHHHHhCCCCcHHHHHHHHHHh
Q 008149           16 HIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAA   56 (576)
Q Consensus        16 ~s~~r~~li~MGFs~e~V~kAIqe~Ge~~~~~~Ile~Ll~~   56 (576)
                      ..+...+|++|||+++.|.+|++..+. | ++.-+|+|+..
T Consensus        29 ~ee~I~~L~eMGF~r~~a~~AL~~~~~-n-ve~Ave~Ll~~   67 (73)
T 1vg5_A           29 SEEQIQKLVAMGFDRTQVEVALAAADD-D-LTVAVEILMSQ   67 (73)
T ss_dssp             CHHHHHHHHTTTCCHHHHHHHHHHHTS-C-HHHHHHHHHTC
T ss_pred             cHHHHHHHHHcCCCHHHHHHHHHHhCC-C-HHHHHHHHHHC
Confidence            456889999999999999999999986 5 88999999964

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}

Probab=96.08  E-value=0.0091  Score=54.67  Aligned_cols=82  Identities=16%  Similarity=0.139  Sum_probs=59.1

Q ss_pred             ccccCCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhh
Q 008149          436 LKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIH  515 (576)
Q Consensus       436 LK~~f~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~  515 (576)
                      |..+.+.+.+|||+-||.|.+...+.+.|..  .++++|+++.+....+.....  .....+...|+.++..        
T Consensus        36 l~~~~~~~~~vLdiGcG~G~~~~~l~~~~~~--~v~~~D~s~~~~~~a~~~~~~--~~~i~~~~~d~~~~~~--------  103 (215)
T 2pxx_A           36 LEPELRPEDRILVLGCGNSALSYELFLGGFP--NVTSVDYSSVVVAAMQACYAH--VPQLRWETMDVRKLDF--------  103 (215)
T ss_dssp             HGGGCCTTCCEEEETCTTCSHHHHHHHTTCC--CEEEEESCHHHHHHHHHHTTT--CTTCEEEECCTTSCCS--------
T ss_pred             HHHhcCCCCeEEEECCCCcHHHHHHHHcCCC--cEEEEeCCHHHHHHHHHhccc--CCCcEEEEcchhcCCC--------
Confidence            3444466789999999999999999999873  578999999998888765432  1223345677776531        


Q ss_pred             ccCCccEEEecCCC
Q 008149          516 KLGSIDFVICQNSV  529 (576)
Q Consensus       516 ~~g~~DLVIGGpPC  529 (576)
                      ..+.||+|+...+.
T Consensus       104 ~~~~fD~v~~~~~~  117 (215)
T 2pxx_A          104 PSASFDVVLEKGTL  117 (215)
T ss_dssp             CSSCEEEEEEESHH
T ss_pred             CCCcccEEEECcch
Confidence            12579999976654

>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*

Probab=96.07  E-value=0.011  Score=62.06  Aligned_cols=78  Identities=18%  Similarity=0.283  Sum_probs=59.7

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 008149          442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  521 (576)
Q Consensus       442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~D  521 (576)
                      .+.+||||.||.|.+.+.+.+.|.+   |+++|+++.+....+.+....+.. ..++..|+.+....        .+.||
T Consensus       233 ~~~~VLDlGcG~G~~~~~la~~g~~---V~gvDis~~al~~A~~n~~~~~~~-v~~~~~D~~~~~~~--------~~~fD  300 (381)
T 3dmg_A          233 RGRQVLDLGAGYGALTLPLARMGAE---VVGVEDDLASVLSLQKGLEANALK-AQALHSDVDEALTE--------EARFD  300 (381)
T ss_dssp             TTCEEEEETCTTSTTHHHHHHTTCE---EEEEESBHHHHHHHHHHHHHTTCC-CEEEECSTTTTSCT--------TCCEE
T ss_pred             CCCEEEEEeeeCCHHHHHHHHcCCE---EEEEECCHHHHHHHHHHHHHcCCC-eEEEEcchhhcccc--------CCCeE
Confidence            4678999999999999999998863   789999999999888877544322 33566787765431        25799


Q ss_pred             EEEecCCCCC
Q 008149          522 FVICQNSVPQ  531 (576)
Q Consensus       522 LVIGGpPCQ~  531 (576)
                      +|+..+|...
T Consensus       301 ~Ii~npp~~~  310 (381)
T 3dmg_A          301 IIVTNPPFHV  310 (381)
T ss_dssp             EEEECCCCCT
T ss_pred             EEEECCchhh
Confidence            9999888653

>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1

Probab=96.06  E-value=0.0076  Score=43.25  Aligned_cols=35  Identities=20%  Similarity=0.269  Sum_probs=28.3

Q ss_pred             hHHHHHHHhcCCCHHHHHHHHHHhCCCCChhhhhHhH
Q 008149           89 MEITLQLLEMGFSENQVSLAIEKFGSKTPISELADKI  125 (576)
Q Consensus        89 ~~k~~~L~~MGFseeEas~AI~r~G~da~i~eLvD~I  125 (576)
                      .+++..|+.|||++++|..|+..|+-|  ++.=++.+
T Consensus         5 ~~~i~~L~~mGf~~~~a~~AL~~~~~n--~e~A~~~L   39 (40)
T 1z96_A            5 NSKIAQLVSMGFDPLEAAQALDAANGD--LDVAASFL   39 (40)
T ss_dssp             HHHHHHHHHTTCCHHHHHHHHHHTTTC--HHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHcCCC--HHHHHHHH
Confidence            457889999999999999999999764  55545544

>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1

Probab=96.05  E-value=0.006  Score=51.83  Aligned_cols=39  Identities=26%  Similarity=0.309  Sum_probs=35.8

Q ss_pred             hHHHHHHHhcCCCHHHHHHHHHHhCCCCChhhhhHhHhhcc
Q 008149           89 MEITLQLLEMGFSENQVSLAIEKFGSKTPISELADKIFSGQ  129 (576)
Q Consensus        89 ~~k~~~L~~MGFseeEas~AI~r~G~da~i~eLvD~I~Aaq  129 (576)
                      .+++..|+.|||++++|..||..++.+  ++.-+++|+..+
T Consensus        30 ee~I~~Lv~MGF~~~~A~~AL~~t~gd--ve~A~e~L~sh~   68 (83)
T 1veg_A           30 QESINQLVYMGFDTVVAEAALRVFGGN--VQLAAQTLAHHG   68 (83)
T ss_dssp             HHHHHHHHHHSCCHHHHHHHHHHTTTC--HHHHHHHHHHHT
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHcCCC--HHHHHHHHHhCC
Confidence            468999999999999999999999987  888899999865

>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.03  E-value=0.0057  Score=48.86  Aligned_cols=39  Identities=21%  Similarity=0.231  Sum_probs=34.5

Q ss_pred             hhhhhHHHhcCCCChHHHHHHHHHhCCCCcHHHHHHHHHHh
Q 008149           16 HIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAA   56 (576)
Q Consensus        16 ~s~~r~~li~MGFs~e~V~kAIqe~Ge~~~~~~Ile~Ll~~   56 (576)
                      ..+...+|++|||+++.+.+|++..+. + ++.-+++|+..
T Consensus         9 ~~~~v~~L~~MGF~~~~a~~AL~~t~~-n-ve~A~e~L~~~   47 (63)
T 2dak_A            9 PEDCVTTIVSMGFSRDQALKALRATNN-S-LERAVDWIFSH   47 (63)
T ss_dssp             CHHHHHHHHHHTCCHHHHHHHHHHTTS-C-SHHHHHHHHHH
T ss_pred             CHHHHHHHHHcCCCHHHHHHHHHHcCC-C-HHHHHHHHHhC
Confidence            356789999999999999999999976 5 89999999974

>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}

Probab=95.99  E-value=0.012  Score=61.95  Aligned_cols=79  Identities=11%  Similarity=0.113  Sum_probs=56.5

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCce-------------------------------------eeEEEeeCCHHHHHHHH
Q 008149          442 GGLTMLSVFSGIGGAEVTLHRLGIKL-------------------------------------KGVISIETSETNRRILK  484 (576)
Q Consensus       442 ~~l~VLsLFSGiGG~slGL~~aGi~~-------------------------------------k~vvavEid~~a~~t~k  484 (576)
                      .+.+|||+|||.|++.+.+...+.++                                     ..|+++|+|+.+.+.-+
T Consensus       201 ~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~al~~Ar  280 (393)
T 3k0b_A          201 PDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNIIGGDIDARLIEIAK  280 (393)
T ss_dssp             TTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHHHHH
T ss_pred             CCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceEEEEECCHHHHHHHH
Confidence            46789999999999976655444321                                     13889999999999988


Q ss_pred             HHhhhcCCCC-CccccccccccChhhHHHhhhccCCccEEEecCCC
Q 008149          485 RWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGSIDFVICQNSV  529 (576)
Q Consensus       485 ~~~~~tn~~g-~l~~~~DI~~lt~~~Ie~l~~~~g~~DLVIGGpPC  529 (576)
                      .+....+... ..+..+|+.++...         +.+|+|+.-||-
T Consensus       281 ~Na~~~gl~~~I~~~~~D~~~~~~~---------~~fD~Iv~NPPY  317 (393)
T 3k0b_A          281 QNAVEAGLGDLITFRQLQVADFQTE---------DEYGVVVANPPY  317 (393)
T ss_dssp             HHHHHTTCTTCSEEEECCGGGCCCC---------CCSCEEEECCCC
T ss_pred             HHHHHcCCCCceEEEECChHhCCCC---------CCCCEEEECCCC
Confidence            8776544322 23566888776531         479999998883

>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45

Probab=95.95  E-value=0.0069  Score=61.62  Aligned_cols=80  Identities=13%  Similarity=-0.030  Sum_probs=55.0

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCc----eeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhcc
Q 008149          442 GGLTMLSVFSGIGGAEVTLHRLGIK----LKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKL  517 (576)
Q Consensus       442 ~~l~VLsLFSGiGG~slGL~~aGi~----~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~  517 (576)
                      .+.+|||+.||.|++.+.+.+..-.    -..++++|+++.+.++.+.+....+. ...+..+|.....         ..
T Consensus       130 ~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~-~~~i~~~D~l~~~---------~~  199 (344)
T 2f8l_A          130 KNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQ-KMTLLHQDGLANL---------LV  199 (344)
T ss_dssp             SEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTC-CCEEEESCTTSCC---------CC
T ss_pred             CCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCC-CceEEECCCCCcc---------cc
Confidence            4589999999999999887654311    13589999999999888876543322 2234456653311         12


Q ss_pred             CCccEEEecCCCCC
Q 008149          518 GSIDFVICQNSVPQ  531 (576)
Q Consensus       518 g~~DLVIGGpPCQ~  531 (576)
                      +.||+|++-||..-
T Consensus       200 ~~fD~Ii~NPPfg~  213 (344)
T 2f8l_A          200 DPVDVVISDLPVGY  213 (344)
T ss_dssp             CCEEEEEEECCCSE
T ss_pred             CCccEEEECCCCCC
Confidence            57999999999743

>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*

Probab=95.92  E-value=0.009  Score=60.79  Aligned_cols=97  Identities=15%  Similarity=0.095  Sum_probs=66.4

Q ss_pred             Hhhhhhccc--cchhhhccccccCCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCc
Q 008149          419 SLRHCFQTD--TLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGEL  496 (576)
Q Consensus       419 ~Lg~sf~vd--tv~~~lsvLK~~f~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l  496 (576)
                      .+|-.|-+|  ++..++..+..  ..+-+|||+-||.|.++..|.+.|-   -|+++|+|+.....++.....  .....
T Consensus        27 ~~GQnfL~d~~i~~~Iv~~l~~--~~~~~VLEIG~G~G~lT~~La~~~~---~V~aVEid~~li~~a~~~~~~--~~~v~   99 (295)
T 3gru_A           27 KLGQCFLIDKNFVNKAVESANL--TKDDVVLEIGLGKGILTEELAKNAK---KVYVIEIDKSLEPYANKLKEL--YNNIE   99 (295)
T ss_dssp             ---CCEECCHHHHHHHHHHTTC--CTTCEEEEECCTTSHHHHHHHHHSS---EEEEEESCGGGHHHHHHHHHH--CSSEE
T ss_pred             ccCccccCCHHHHHHHHHhcCC--CCcCEEEEECCCchHHHHHHHhcCC---EEEEEECCHHHHHHHHHHhcc--CCCeE
Confidence            346655443  44555554432  2457899999999999999988874   478999999999888876642  12234


Q ss_pred             cccccccccChhhHHHhhhccCCccEEEecCCCC
Q 008149          497 VQIEDIQALTTKKFESLIHKLGSIDFVICQNSVP  530 (576)
Q Consensus       497 ~~~~DI~~lt~~~Ie~l~~~~g~~DLVIGGpPCQ  530 (576)
                      ++.+|+.+++-..        ..+|+|++..|-+
T Consensus       100 vi~gD~l~~~~~~--------~~fD~Iv~NlPy~  125 (295)
T 3gru_A          100 IIWGDALKVDLNK--------LDFNKVVANLPYQ  125 (295)
T ss_dssp             EEESCTTTSCGGG--------SCCSEEEEECCGG
T ss_pred             EEECchhhCCccc--------CCccEEEEeCccc
Confidence            6778998876322        2589999888743

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}

Probab=95.92  E-value=0.0063  Score=55.79  Aligned_cols=82  Identities=12%  Similarity=0.076  Sum_probs=56.3

Q ss_pred             CCCCCcccccCCCCChhHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHhhhcCC-CCCccccccccccChhhHHHhhhcc
Q 008149          440 FPGGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQ-TGELVQIEDIQALTTKKFESLIHKL  517 (576)
Q Consensus       440 f~~~l~VLsLFSGiGG~slGL~~a-Gi~~k~vvavEid~~a~~t~k~~~~~tn~-~g~l~~~~DI~~lt~~~Ie~l~~~~  517 (576)
                      .+.+.+|||+.||.|++...+.+. |-. ..++++|+++.+.+..+.+....+. ....+..+|+.++..     .  ..
T Consensus        20 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-----~--~~   91 (197)
T 3eey_A           20 VKEGDTVVDATCGNGNDTAFLASLVGEN-GRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDK-----Y--ID   91 (197)
T ss_dssp             CCTTCEEEESCCTTSHHHHHHHHHHCTT-CEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGG-----T--CC
T ss_pred             CCCCCEEEEcCCCCCHHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhh-----h--cc
Confidence            345679999999999999887765 211 2478999999998888877654322 122345677665532     1  11


Q ss_pred             CCccEEEecCCC
Q 008149          518 GSIDFVICQNSV  529 (576)
Q Consensus       518 g~~DLVIGGpPC  529 (576)
                      +.||+|+..+|-
T Consensus        92 ~~fD~v~~~~~~  103 (197)
T 3eey_A           92 CPVKAVMFNLGY  103 (197)
T ss_dssp             SCEEEEEEEESB
T ss_pred             CCceEEEEcCCc
Confidence            579999988766

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}

Probab=95.91  E-value=0.02  Score=53.74  Aligned_cols=97  Identities=18%  Similarity=0.109  Sum_probs=62.5

Q ss_pred             hhccccccCCCCCcccccCCCCChhHHHHHHcCC----ceeeEEEeeCCHHHHHHHHHHhhhcC-----CCCCccccccc
Q 008149          432 HLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGI----KLKGVISIETSETNRRILKRWWESSG-----QTGELVQIEDI  502 (576)
Q Consensus       432 ~lsvLK~~f~~~l~VLsLFSGiGG~slGL~~aGi----~~k~vvavEid~~a~~t~k~~~~~tn-----~~g~l~~~~DI  502 (576)
                      .+..|......+.+|||+-||.|.+...+.+.+-    +-..|+++|+++...+..+.+....+     .....+..+|+
T Consensus        70 ~~~~l~~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~  149 (227)
T 2pbf_A           70 SLKRLINVLKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNI  149 (227)
T ss_dssp             HHHHHTTTSCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCG
T ss_pred             HHHHHHhhCCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECCh
Confidence            3444443344568999999999999988887652    11247899999998888777654432     12223456777


Q ss_pred             cccChhhHHHhhhccCCccEEEecCCCCCc
Q 008149          503 QALTTKKFESLIHKLGSIDFVICQNSVPQI  532 (576)
Q Consensus       503 ~~lt~~~Ie~l~~~~g~~DLVIGGpPCQ~F  532 (576)
                      .+...+...    ..+.||+|+...++..+
T Consensus       150 ~~~~~~~~~----~~~~fD~I~~~~~~~~~  175 (227)
T 2pbf_A          150 YQVNEEEKK----ELGLFDAIHVGASASEL  175 (227)
T ss_dssp             GGCCHHHHH----HHCCEEEEEECSBBSSC
T ss_pred             HhcccccCc----cCCCcCEEEECCchHHH
Confidence            664311101    12579999988887654

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*

Probab=95.90  E-value=0.0092  Score=58.24  Aligned_cols=75  Identities=13%  Similarity=0.177  Sum_probs=54.0

Q ss_pred             CCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 008149          441 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI  520 (576)
Q Consensus       441 ~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~  520 (576)
                      +.+.+|||+-||.|.+.+.+.+.|.   .|+++|+++.+....+.+....+.. ..+..+|+.+.    +     ..+.+
T Consensus       119 ~~~~~VLDiGcG~G~l~~~la~~g~---~v~gvDi~~~~v~~a~~n~~~~~~~-v~~~~~d~~~~----~-----~~~~f  185 (254)
T 2nxc_A          119 RPGDKVLDLGTGSGVLAIAAEKLGG---KALGVDIDPMVLPQAEANAKRNGVR-PRFLEGSLEAA----L-----PFGPF  185 (254)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHTTC---EEEEEESCGGGHHHHHHHHHHTTCC-CEEEESCHHHH----G-----GGCCE
T ss_pred             CCCCEEEEecCCCcHHHHHHHHhCC---eEEEEECCHHHHHHHHHHHHHcCCc-EEEEECChhhc----C-----cCCCC
Confidence            4567999999999999999999986   4789999999998888776543222 22334554431    1     12579


Q ss_pred             cEEEecCC
Q 008149          521 DFVICQNS  528 (576)
Q Consensus       521 DLVIGGpP  528 (576)
                      |+|+...+
T Consensus       186 D~Vv~n~~  193 (254)
T 2nxc_A          186 DLLVANLY  193 (254)
T ss_dssp             EEEEEECC
T ss_pred             CEEEECCc
Confidence            99997554

>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}

Probab=95.88  E-value=0.0093  Score=62.48  Aligned_cols=78  Identities=15%  Similarity=0.250  Sum_probs=55.3

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCce-------------------------------------eeEEEeeCCHHHHHHHH
Q 008149          442 GGLTMLSVFSGIGGAEVTLHRLGIKL-------------------------------------KGVISIETSETNRRILK  484 (576)
Q Consensus       442 ~~l~VLsLFSGiGG~slGL~~aGi~~-------------------------------------k~vvavEid~~a~~t~k  484 (576)
                      .+.+|||+|||.|++.+.+.+.|.++                                     ..|+++|+|+.+.++-+
T Consensus       195 ~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~ai~~Ar  274 (385)
T 3ldu_A          195 AGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKIYGYDIDEESIDIAR  274 (385)
T ss_dssp             TTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCEEEEESCHHHHHHHH
T ss_pred             CCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceEEEEECCHHHHHHHH
Confidence            46789999999999987765544221                                     24789999999999888


Q ss_pred             HHhhhcCCCC-CccccccccccChhhHHHhhhccCCccEEEecCC
Q 008149          485 RWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGSIDFVICQNS  528 (576)
Q Consensus       485 ~~~~~tn~~g-~l~~~~DI~~lt~~~Ie~l~~~~g~~DLVIGGpP  528 (576)
                      .+....+... ..+..+|+.++..         .+.+|+|+.-||
T Consensus       275 ~Na~~~gl~~~i~~~~~D~~~l~~---------~~~~D~Iv~NPP  310 (385)
T 3ldu_A          275 ENAEIAGVDEYIEFNVGDATQFKS---------EDEFGFIITNPP  310 (385)
T ss_dssp             HHHHHHTCGGGEEEEECCGGGCCC---------SCBSCEEEECCC
T ss_pred             HHHHHcCCCCceEEEECChhhcCc---------CCCCcEEEECCC
Confidence            8765443221 2245677776643         146899999888

>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}

Probab=95.87  E-value=0.017  Score=61.36  Aligned_cols=88  Identities=14%  Similarity=0.111  Sum_probs=61.7

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 008149          442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  521 (576)
Q Consensus       442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~D  521 (576)
                      .+.+|||+.||.||.+..+...--.-..|+++|+++...+..+.+....+.....+..+|+.++... +     .-+.||
T Consensus       259 ~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~-~-----~~~~fD  332 (450)
T 2yxl_A          259 PGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIKIVKPLVKDARKAPEI-I-----GEEVAD  332 (450)
T ss_dssp             TTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCTTCCSSS-S-----CSSCEE
T ss_pred             CcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEEEcChhhcchh-h-----ccCCCC
Confidence            4678999999999999888764211024789999999988888776544332333456777665421 1     014699


Q ss_pred             EEEecCCCCCcccc
Q 008149          522 FVICQNSVPQIPNS  535 (576)
Q Consensus       522 LVIGGpPCQ~FS~a  535 (576)
                      +|+--+||.++...
T Consensus       333 ~Vl~D~Pcsg~g~~  346 (450)
T 2yxl_A          333 KVLLDAPCTSSGTI  346 (450)
T ss_dssp             EEEEECCCCCGGGT
T ss_pred             EEEEcCCCCCCeee
Confidence            99999999988754

>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1

Probab=95.87  E-value=0.0061  Score=49.11  Aligned_cols=38  Identities=24%  Similarity=0.279  Sum_probs=33.9

Q ss_pred             hhhHHHhcCCCChHHHHHHHHHhCCCCcHHHHHHHHHHh
Q 008149           18 EKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAA   56 (576)
Q Consensus        18 ~~r~~li~MGFs~e~V~kAIqe~Ge~~~~~~Ile~Ll~~   56 (576)
                      +...+|++|||+++.+.+|+...|..+ ++.=+++|+..
T Consensus        21 ~~i~~L~~MGF~~~~a~~AL~~t~~~n-ve~A~ewL~~~   58 (64)
T 2cpw_A           21 SALDVLLSMGFPRARAQKALASTGGRS-VQTACDWLFSH   58 (64)
T ss_dssp             CHHHHHHHHTCCHHHHHHHHHHTTTSC-HHHHHHHHHSC
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHcCCCC-HHHHHHHHHhC
Confidence            477999999999999999999998756 89999999953

>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*

Probab=95.86  E-value=0.0077  Score=60.53  Aligned_cols=96  Identities=15%  Similarity=0.139  Sum_probs=66.0

Q ss_pred             Hhhhhhccc--cchhhhccccccCCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCc
Q 008149          419 SLRHCFQTD--TLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGEL  496 (576)
Q Consensus       419 ~Lg~sf~vd--tv~~~lsvLK~~f~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l  496 (576)
                      .+|..|-+|  .+..++..+. . ..+ +|||+-||.|.++..|.+.|.   -|+++|+|+.....++.....   ....
T Consensus        24 ~~GQnfL~d~~i~~~Iv~~~~-~-~~~-~VLEIG~G~G~lt~~L~~~~~---~V~avEid~~~~~~l~~~~~~---~~v~   94 (271)
T 3fut_A           24 RFGQNFLVSEAHLRRIVEAAR-P-FTG-PVFEVGPGLGALTRALLEAGA---EVTAIEKDLRLRPVLEETLSG---LPVR   94 (271)
T ss_dssp             TSSCCEECCHHHHHHHHHHHC-C-CCS-CEEEECCTTSHHHHHHHHTTC---CEEEEESCGGGHHHHHHHTTT---SSEE
T ss_pred             cCCccccCCHHHHHHHHHhcC-C-CCC-eEEEEeCchHHHHHHHHHcCC---EEEEEECCHHHHHHHHHhcCC---CCEE
Confidence            345555333  3333343332 2 235 999999999999999999884   378999999999988876542   1233


Q ss_pred             cccccccccChhhHHHhhhccCCccEEEecCCCC
Q 008149          497 VQIEDIQALTTKKFESLIHKLGSIDFVICQNSVP  530 (576)
Q Consensus       497 ~~~~DI~~lt~~~Ie~l~~~~g~~DLVIGGpPCQ  530 (576)
                      ++.+|+.+++-..+       ..+|+|+|-.|=+
T Consensus        95 vi~~D~l~~~~~~~-------~~~~~iv~NlPy~  121 (271)
T 3fut_A           95 LVFQDALLYPWEEV-------PQGSLLVANLPYH  121 (271)
T ss_dssp             EEESCGGGSCGGGS-------CTTEEEEEEECSS
T ss_pred             EEECChhhCChhhc-------cCccEEEecCccc
Confidence            67799988875332       2579999988743

>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1

Probab=95.85  E-value=0.0092  Score=49.28  Aligned_cols=39  Identities=26%  Similarity=0.404  Sum_probs=34.9

Q ss_pred             hHHHHHHHhcCCCHHHHHHHHHHhCCCCChhhhhHhHhhcc
Q 008149           89 MEITLQLLEMGFSENQVSLAIEKFGSKTPISELADKIFSGQ  129 (576)
Q Consensus        89 ~~k~~~L~~MGFseeEas~AI~r~G~da~i~eLvD~I~Aaq  129 (576)
                      .+++..|+.|||++++|..|+..||.  .++.=++.|+..+
T Consensus        30 ~~~v~~L~~MGF~~~~a~~AL~~t~~--nve~Ave~L~~~~   68 (73)
T 1wiv_A           30 QSSVDTLLSFGFAEDVARKALKASGG--DIEKATDWVFNNS   68 (73)
T ss_dssp             HHHHHHHHHHTCCHHHHHHHHHHTTS--CHHHHHHHHHHSC
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHhCC--CHHHHHHHHHhCC
Confidence            46788999999999999999999997  6888899999765

>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0

Probab=95.83  E-value=0.0084  Score=59.54  Aligned_cols=99  Identities=13%  Similarity=0.107  Sum_probs=64.6

Q ss_pred             HHhhhhhccc--cchhhhccccccCCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCC
Q 008149          418 ESLRHCFQTD--TLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGE  495 (576)
Q Consensus       418 k~Lg~sf~vd--tv~~~lsvLK~~f~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~  495 (576)
                      |.+|-.|-+|  .+..++..+..  ..+-+|||+-||.|.++..|.+.|-   -|+++|+|+.....++..+..  ....
T Consensus         5 k~~GQnFL~d~~i~~~iv~~~~~--~~~~~VLEIG~G~G~lt~~La~~~~---~V~avEid~~~~~~~~~~~~~--~~~v   77 (255)
T 3tqs_A            5 KRFGQHFLHDSFVLQKIVSAIHP--QKTDTLVEIGPGRGALTDYLLTECD---NLALVEIDRDLVAFLQKKYNQ--QKNI   77 (255)
T ss_dssp             ----CCEECCHHHHHHHHHHHCC--CTTCEEEEECCTTTTTHHHHTTTSS---EEEEEECCHHHHHHHHHHHTT--CTTE
T ss_pred             CcCCcccccCHHHHHHHHHhcCC--CCcCEEEEEcccccHHHHHHHHhCC---EEEEEECCHHHHHHHHHHHhh--CCCc
Confidence            4456666444  34444444431  2467899999999999999998884   478999999999988876643  1223


Q ss_pred             ccccccccccChhhHHHhhhccCCccEEEecCC
Q 008149          496 LVQIEDIQALTTKKFESLIHKLGSIDFVICQNS  528 (576)
Q Consensus       496 l~~~~DI~~lt~~~Ie~l~~~~g~~DLVIGGpP  528 (576)
                      .++.+|+.+++-..+.    ..+.+| |+|-+|
T Consensus        78 ~~i~~D~~~~~~~~~~----~~~~~~-vv~NlP  105 (255)
T 3tqs_A           78 TIYQNDALQFDFSSVK----TDKPLR-VVGNLP  105 (255)
T ss_dssp             EEEESCTTTCCGGGSC----CSSCEE-EEEECC
T ss_pred             EEEEcchHhCCHHHhc----cCCCeE-EEecCC
Confidence            3677999888743321    013567 777776

>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}

Probab=95.81  E-value=0.017  Score=56.19  Aligned_cols=76  Identities=21%  Similarity=0.217  Sum_probs=57.1

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 008149          442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  521 (576)
Q Consensus       442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~D  521 (576)
                      .+.+|||+.||.|.+...|.+.|.+   |+++|+++.+....+.+....+. ...+..+|+.++..         .+.+|
T Consensus       120 ~~~~vLD~GcG~G~~~~~l~~~g~~---v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~---------~~~fD  186 (286)
T 3m70_A          120 SPCKVLDLGCGQGRNSLYLSLLGYD---VTSWDHNENSIAFLNETKEKENL-NISTALYDINAANI---------QENYD  186 (286)
T ss_dssp             CSCEEEEESCTTCHHHHHHHHTTCE---EEEEESCHHHHHHHHHHHHHTTC-CEEEEECCGGGCCC---------CSCEE
T ss_pred             CCCcEEEECCCCCHHHHHHHHCCCe---EEEEECCHHHHHHHHHHHHHcCC-ceEEEEeccccccc---------cCCcc
Confidence            4678999999999999999999874   68999999998888776554322 23345677776543         25799


Q ss_pred             EEEecCCCC
Q 008149          522 FVICQNSVP  530 (576)
Q Consensus       522 LVIGGpPCQ  530 (576)
                      +|+...+..
T Consensus       187 ~i~~~~~~~  195 (286)
T 3m70_A          187 FIVSTVVFM  195 (286)
T ss_dssp             EEEECSSGG
T ss_pred             EEEEccchh
Confidence            999876544

>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1

Probab=95.80  E-value=0.012  Score=47.34  Aligned_cols=40  Identities=15%  Similarity=0.155  Sum_probs=34.8

Q ss_pred             hhhhhHHHhcCCCChHHHHHHHHHhCCCCcHHHHHHHHHHhh
Q 008149           16 HIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQ   57 (576)
Q Consensus        16 ~s~~r~~li~MGFs~e~V~kAIqe~Ge~~~~~~Ile~Ll~~q   57 (576)
                      ..+...+|++|||+.+.+.+|++..+. + ++.=+++|++.+
T Consensus         9 ~~~~I~~L~~MGF~~~~a~~AL~~~~~-n-ve~A~e~L~~~~   48 (63)
T 1wji_A            9 DEKALKHITEMGFSKEASRQALMDNGN-N-LEAALNVLLTSN   48 (63)
T ss_dssp             CHHHHHHHHTTTCCHHHHHHHHHHTTS-C-HHHHHHHHHHHS
T ss_pred             CHHHHHHHHHcCCCHHHHHHHHHHhCC-C-HHHHHHHHHHCC
Confidence            456788999999999999999999876 5 899999999753

>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*

Probab=95.78  E-value=0.0075  Score=62.09  Aligned_cols=96  Identities=11%  Similarity=0.078  Sum_probs=59.5

Q ss_pred             HHhhhhhccccchhh-hccccccCCCCCcccccCCCCChhHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHhhhcCCCCC
Q 008149          418 ESLRHCFQTDTLGYH-LSVLKSMFPGGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTGE  495 (576)
Q Consensus       418 k~Lg~sf~vdtv~~~-lsvLK~~f~~~l~VLsLFSGiGG~slGL~~a-Gi~~k~vvavEid~~a~~t~k~~~~~tn~~g~  495 (576)
                      +.+|.-|+.+.+... +..+..  +.+.+|||+.||.|++.+.+.+. +-. ..+.++|+++.+.+..         ...
T Consensus        16 ~~~g~~~TP~~l~~~~~~~~~~--~~~~~vLD~gcGtG~~~~~~~~~~~~~-~~i~gvDi~~~~~~~a---------~~~   83 (421)
T 2ih2_A           16 RSLGRVETPPEVVDFMVSLAEA--PRGGRVLEPACAHGPFLRAFREAHGTA-YRFVGVEIDPKALDLP---------PWA   83 (421)
T ss_dssp             -----CCCCHHHHHHHHHHCCC--CTTCEEEEETCTTCHHHHHHHHHHCSC-SEEEEEESCTTTCCCC---------TTE
T ss_pred             ccCceEeCCHHHHHHHHHhhcc--CCCCEEEECCCCChHHHHHHHHHhCCC-CeEEEEECCHHHHHhC---------CCC
Confidence            455666655544443 333332  23569999999999999988753 211 3578999999875322         112


Q ss_pred             ccccccccccChhhHHHhhhccCCccEEEecCCCCCccc
Q 008149          496 LVQIEDIQALTTKKFESLIHKLGSIDFVICQNSVPQIPN  534 (576)
Q Consensus       496 l~~~~DI~~lt~~~Ie~l~~~~g~~DLVIGGpPCQ~FS~  534 (576)
                      .+..+|+.+...         .+.||+|++-||.-....
T Consensus        84 ~~~~~D~~~~~~---------~~~fD~Ii~NPPy~~~~~  113 (421)
T 2ih2_A           84 EGILADFLLWEP---------GEAFDLILGNPPYGIVGE  113 (421)
T ss_dssp             EEEESCGGGCCC---------SSCEEEEEECCCCCCBSC
T ss_pred             cEEeCChhhcCc---------cCCCCEEEECcCccCccc
Confidence            255677765532         157999999999987653

>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1

Probab=95.76  E-value=0.0094  Score=50.63  Aligned_cols=41  Identities=20%  Similarity=0.146  Sum_probs=36.1

Q ss_pred             hhhhhHHHhcCCCChHHHHHHHHHhCCCCcHHHHHHHHHHhhh
Q 008149           16 HIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQI   58 (576)
Q Consensus        16 ~s~~r~~li~MGFs~e~V~kAIqe~Ge~~~~~~Ile~Ll~~q~   58 (576)
                      ..++..+|++|||+++.|.+|++..|. + ++.=+|+|++.+.
T Consensus        29 ~ee~I~~Lv~MGF~~~~A~~AL~~t~g-d-ve~A~e~L~sh~~   69 (83)
T 1veg_A           29 SQESINQLVYMGFDTVVAEAALRVFGG-N-VQLAAQTLAHHGG   69 (83)
T ss_dssp             CHHHHHHHHHHSCCHHHHHHHHHHTTT-C-HHHHHHHHHHHTS
T ss_pred             CHHHHHHHHHcCCCHHHHHHHHHHcCC-C-HHHHHHHHHhCCC
Confidence            467899999999999999999999986 4 8899999997643

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=95.75  E-value=0.024  Score=52.38  Aligned_cols=80  Identities=11%  Similarity=0.009  Sum_probs=56.4

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 008149          442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  521 (576)
Q Consensus       442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~D  521 (576)
                      .+.+|||+.||.|.+.+.+.+.|-. ..|+++|+++...+..+.+....+.....+..+|+.+.-.        ..+.+|
T Consensus        40 ~~~~vLDiG~G~G~~~~~la~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~--------~~~~~D  110 (204)
T 3e05_A           40 DDLVMWDIGAGSASVSIEASNLMPN-GRIFALERNPQYLGFIRDNLKKFVARNVTLVEAFAPEGLD--------DLPDPD  110 (204)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHHCTT-SEEEEEECCHHHHHHHHHHHHHHTCTTEEEEECCTTTTCT--------TSCCCS
T ss_pred             CCCEEEEECCCCCHHHHHHHHHCCC-CEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeCChhhhhh--------cCCCCC
Confidence            4678999999999999999988722 3478999999998888877654432222244566643321        125799


Q ss_pred             EEEecCCCC
Q 008149          522 FVICQNSVP  530 (576)
Q Consensus       522 LVIGGpPCQ  530 (576)
                      +|+.+.+..
T Consensus       111 ~i~~~~~~~  119 (204)
T 3e05_A          111 RVFIGGSGG  119 (204)
T ss_dssp             EEEESCCTT
T ss_pred             EEEECCCCc
Confidence            999887654

>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}

Probab=95.74  E-value=0.018  Score=51.14  Aligned_cols=75  Identities=12%  Similarity=0.056  Sum_probs=53.5

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 008149          442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  521 (576)
Q Consensus       442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~D  521 (576)
                      .+.+|||+.||.|.+...+.+.+   ..++++|+++.+.+..+.+....+.....+..+|+.+    .++     .+.+|
T Consensus        35 ~~~~vLdiG~G~G~~~~~l~~~~---~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~----~~~-----~~~~D  102 (183)
T 2yxd_A           35 KDDVVVDVGCGSGGMTVEIAKRC---KFVYAIDYLDGAIEVTKQNLAKFNIKNCQIIKGRAED----VLD-----KLEFN  102 (183)
T ss_dssp             TTCEEEEESCCCSHHHHHHHTTS---SEEEEEECSHHHHHHHHHHHHHTTCCSEEEEESCHHH----HGG-----GCCCS
T ss_pred             CCCEEEEeCCCCCHHHHHHHhcC---CeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEECCccc----ccc-----CCCCc
Confidence            45789999999999999988844   3478999999998888877654332222244556543    111     15799


Q ss_pred             EEEecCC
Q 008149          522 FVICQNS  528 (576)
Q Consensus       522 LVIGGpP  528 (576)
                      +|+..+|
T Consensus       103 ~i~~~~~  109 (183)
T 2yxd_A          103 KAFIGGT  109 (183)
T ss_dssp             EEEECSC
T ss_pred             EEEECCc
Confidence            9999887

>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}

Probab=95.72  E-value=0.017  Score=60.80  Aligned_cols=79  Identities=10%  Similarity=0.104  Sum_probs=56.6

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCce-------------------------------------eeEEEeeCCHHHHHHHH
Q 008149          442 GGLTMLSVFSGIGGAEVTLHRLGIKL-------------------------------------KGVISIETSETNRRILK  484 (576)
Q Consensus       442 ~~l~VLsLFSGiGG~slGL~~aGi~~-------------------------------------k~vvavEid~~a~~t~k  484 (576)
                      .+-+++|.|||.|++.+.+...+.++                                     ..++++|+|+.+.+..+
T Consensus       194 ~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v~GvDid~~al~~Ar  273 (384)
T 3ldg_A          194 PDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDISGFDFDGRMVEIAR  273 (384)
T ss_dssp             TTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHHHHH
T ss_pred             CCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceEEEEECCHHHHHHHH
Confidence            45789999999999976655443321                                     13889999999999998


Q ss_pred             HHhhhcCCCC-CccccccccccChhhHHHhhhccCCccEEEecCCC
Q 008149          485 RWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGSIDFVICQNSV  529 (576)
Q Consensus       485 ~~~~~tn~~g-~l~~~~DI~~lt~~~Ie~l~~~~g~~DLVIGGpPC  529 (576)
                      .+....+... ..+..+|+.++...         +.+|+|+.-||-
T Consensus       274 ~Na~~~gl~~~I~~~~~D~~~l~~~---------~~fD~Iv~NPPY  310 (384)
T 3ldg_A          274 KNAREVGLEDVVKLKQMRLQDFKTN---------KINGVLISNPPY  310 (384)
T ss_dssp             HHHHHTTCTTTEEEEECCGGGCCCC---------CCSCEEEECCCC
T ss_pred             HHHHHcCCCCceEEEECChHHCCcc---------CCcCEEEECCch
Confidence            8876554322 23556788776531         379999988884

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=95.72  E-value=0.013  Score=52.47  Aligned_cols=77  Identities=17%  Similarity=0.181  Sum_probs=56.2

Q ss_pred             cCCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccC
Q 008149          439 MFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLG  518 (576)
Q Consensus       439 ~f~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g  518 (576)
                      +.+.+.+|||+-||.|.+...+.+.|.+   +.++|+++.+....+....     ...+...|+.++..        ..+
T Consensus        43 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~---v~~~D~~~~~~~~a~~~~~-----~~~~~~~d~~~~~~--------~~~  106 (195)
T 3cgg_A           43 MAPRGAKILDAGCGQGRIGGYLSKQGHD---VLGTDLDPILIDYAKQDFP-----EARWVVGDLSVDQI--------SET  106 (195)
T ss_dssp             HSCTTCEEEEETCTTTHHHHHHHHTTCE---EEEEESCHHHHHHHHHHCT-----TSEEEECCTTTSCC--------CCC
T ss_pred             hccCCCeEEEECCCCCHHHHHHHHCCCc---EEEEcCCHHHHHHHHHhCC-----CCcEEEcccccCCC--------CCC
Confidence            3456789999999999999999998863   7889999998887776432     22345677766531        125


Q ss_pred             CccEEEecCCCCC
Q 008149          519 SIDFVICQNSVPQ  531 (576)
Q Consensus       519 ~~DLVIGGpPCQ~  531 (576)
                      .+|+|+..+++-.
T Consensus       107 ~~D~i~~~~~~~~  119 (195)
T 3cgg_A          107 DFDLIVSAGNVMG  119 (195)
T ss_dssp             CEEEEEECCCCGG
T ss_pred             ceeEEEECCcHHh
Confidence            7999998655543

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*

Probab=95.72  E-value=0.019  Score=53.81  Aligned_cols=91  Identities=18%  Similarity=0.120  Sum_probs=60.7

Q ss_pred             hccccccCCCCCcccccCCCCChhHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHhhhcCC-----CCCccccccccccC
Q 008149          433 LSVLKSMFPGGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQ-----TGELVQIEDIQALT  506 (576)
Q Consensus       433 lsvLK~~f~~~l~VLsLFSGiGG~slGL~~a-Gi~~k~vvavEid~~a~~t~k~~~~~tn~-----~g~l~~~~DI~~lt  506 (576)
                      +..|......+.+|||+-||.|++...+.+. |-. ..|+++|+++...+..+.+....+.     ....+...|+....
T Consensus        68 l~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~  146 (226)
T 1i1n_A           68 LELLFDQLHEGAKALDVGSGSGILTACFARMVGCT-GKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGY  146 (226)
T ss_dssp             HHHTTTTSCTTCEEEEETCTTSHHHHHHHHHHCTT-CEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCC
T ss_pred             HHHHHhhCCCCCEEEEEcCCcCHHHHHHHHHhCCC-cEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccCc
Confidence            4444433455789999999999999888765 422 2478999999988877766543211     11223456665432


Q ss_pred             hhhHHHhhhccCCccEEEecCCCCCc
Q 008149          507 TKKFESLIHKLGSIDFVICQNSVPQI  532 (576)
Q Consensus       507 ~~~Ie~l~~~~g~~DLVIGGpPCQ~F  532 (576)
                      .        ..+.||+|+...||..+
T Consensus       147 ~--------~~~~fD~i~~~~~~~~~  164 (226)
T 1i1n_A          147 A--------EEAPYDAIHVGAAAPVV  164 (226)
T ss_dssp             G--------GGCCEEEEEECSBBSSC
T ss_pred             c--------cCCCcCEEEECCchHHH
Confidence            1        12579999999999765

>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}

Probab=95.67  E-value=0.0086  Score=54.61  Aligned_cols=69  Identities=14%  Similarity=0.102  Sum_probs=51.0

Q ss_pred             CCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCccE
Q 008149          443 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDF  522 (576)
Q Consensus       443 ~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~DL  522 (576)
                      +-+|||+.||.|.+...+.+.|    .|+++|+++.+.+.       .  ....+..+|+.+.-.+         +.||+
T Consensus        24 ~~~vLD~GcG~G~~~~~l~~~~----~v~gvD~s~~~~~~-------~--~~~~~~~~d~~~~~~~---------~~fD~   81 (170)
T 3q87_B           24 MKIVLDLGTSTGVITEQLRKRN----TVVSTDLNIRALES-------H--RGGNLVRADLLCSINQ---------ESVDV   81 (170)
T ss_dssp             SCEEEEETCTTCHHHHHHTTTS----EEEEEESCHHHHHT-------C--SSSCEEECSTTTTBCG---------GGCSE
T ss_pred             CCeEEEeccCccHHHHHHHhcC----cEEEEECCHHHHhc-------c--cCCeEEECChhhhccc---------CCCCE
Confidence            4589999999999999999988    47899999998654       1  1223566787652211         46999


Q ss_pred             EEecCCCCCcc
Q 008149          523 VICQNSVPQIP  533 (576)
Q Consensus       523 VIGGpPCQ~FS  533 (576)
                      |+..+|-...+
T Consensus        82 i~~n~~~~~~~   92 (170)
T 3q87_B           82 VVFNPPYVPDT   92 (170)
T ss_dssp             EEECCCCBTTC
T ss_pred             EEECCCCccCC
Confidence            99988765543

>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1

Probab=95.66  E-value=0.01  Score=48.95  Aligned_cols=40  Identities=18%  Similarity=0.260  Sum_probs=35.4

Q ss_pred             chhhhhHHHhcCCCChHHHHHHHHHhCCCCcHHHHHHHHHHh
Q 008149           15 LHIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAA   56 (576)
Q Consensus        15 ~~s~~r~~li~MGFs~e~V~kAIqe~Ge~~~~~~Ile~Ll~~   56 (576)
                      ...++..+|++|||+++.+.+|++..|. + ++.=+++|++.
T Consensus        28 ~~~~~v~~L~~MGF~~~~a~~AL~~t~~-n-ve~Ave~L~~~   67 (73)
T 1wiv_A           28 IDQSSVDTLLSFGFAEDVARKALKASGG-D-IEKATDWVFNN   67 (73)
T ss_dssp             SCHHHHHHHHHHTCCHHHHHHHHHHTTS-C-HHHHHHHHHHS
T ss_pred             CCHHHHHHHHHcCCCHHHHHHHHHHhCC-C-HHHHHHHHHhC
Confidence            3567889999999999999999999986 6 88999999964

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}

Probab=95.66  E-value=0.017  Score=53.62  Aligned_cols=87  Identities=18%  Similarity=0.271  Sum_probs=59.7

Q ss_pred             ccccccCCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCC-----CCccccccccccChh
Q 008149          434 SVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQT-----GELVQIEDIQALTTK  508 (576)
Q Consensus       434 svLK~~f~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~-----g~l~~~~DI~~lt~~  508 (576)
                      ..++.+.+.+.+|||+-||.|.+...+...|..   |+++|+++.+....+.+....+..     ...+...|+.++.. 
T Consensus        22 ~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~---v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-   97 (235)
T 3sm3_A           22 PIIHNYLQEDDEILDIGCGSGKISLELASKGYS---VTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSF-   97 (235)
T ss_dssp             TTHHHHCCTTCEEEEETCTTSHHHHHHHHTTCE---EEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCCS-
T ss_pred             HHHHHhCCCCCeEEEECCCCCHHHHHHHhCCCe---EEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccCC-
Confidence            344555667889999999999999999999873   789999999988887765432211     01234566665531 


Q ss_pred             hHHHhhhccCCccEEEecCCCCC
Q 008149          509 KFESLIHKLGSIDFVICQNSVPQ  531 (576)
Q Consensus       509 ~Ie~l~~~~g~~DLVIGGpPCQ~  531 (576)
                             ..+.+|+|+.......
T Consensus        98 -------~~~~~D~v~~~~~l~~  113 (235)
T 3sm3_A           98 -------HDSSFDFAVMQAFLTS  113 (235)
T ss_dssp             -------CTTCEEEEEEESCGGG
T ss_pred             -------CCCceeEEEEcchhhc
Confidence                   1257999997654443

>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1

Probab=95.64  E-value=0.012  Score=47.32  Aligned_cols=39  Identities=23%  Similarity=0.353  Sum_probs=34.4

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHhCCCCChhhhhHhHhhcc
Q 008149           90 EITLQLLEMGFSENQVSLAIEKFGSKTPISELADKIFSGQ  129 (576)
Q Consensus        90 ~k~~~L~~MGFseeEas~AI~r~G~da~i~eLvD~I~Aaq  129 (576)
                      +++..|+.|||++++|..|+..||.. .++.-+++|+..+
T Consensus        11 ~~v~~L~~MGF~~~~a~~AL~~t~~~-nve~A~ewLl~~~   49 (64)
T 1whc_A           11 TALESLIEMGFPRGRAEKALALTGNQ-GIEAAMDWLMEHE   49 (64)
T ss_dssp             CHHHHHHTTTCCHHHHHHHHHHHTSC-CHHHHHHHHHHHT
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHhcCC-CHHHHHHHHHhCC
Confidence            37889999999999999999999743 6999999999876

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}

Probab=95.62  E-value=0.014  Score=54.71  Aligned_cols=83  Identities=17%  Similarity=0.137  Sum_probs=58.5

Q ss_pred             hhhccccccCCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhH
Q 008149          431 YHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKF  510 (576)
Q Consensus       431 ~~lsvLK~~f~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~I  510 (576)
                      ..+..+..+.+.+.+|||+-||.|.+...+.+.|.+   |+++|+++.+....+...   ......+..+|+.++...  
T Consensus        42 ~~~~~l~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~---v~~vD~s~~~~~~a~~~~---~~~~~~~~~~d~~~~~~~--  113 (242)
T 3l8d_A           42 TIIPFFEQYVKKEAEVLDVGCGDGYGTYKLSRTGYK---AVGVDISEVMIQKGKERG---EGPDLSFIKGDLSSLPFE--  113 (242)
T ss_dssp             THHHHHHHHSCTTCEEEEETCTTSHHHHHHHHTTCE---EEEEESCHHHHHHHHTTT---CBTTEEEEECBTTBCSSC--
T ss_pred             HHHHHHHHHcCCCCeEEEEcCCCCHHHHHHHHcCCe---EEEEECCHHHHHHHHhhc---ccCCceEEEcchhcCCCC--
Confidence            344555566667889999999999999999999874   689999999887776432   112233556777765421  


Q ss_pred             HHhhhccCCccEEEecC
Q 008149          511 ESLIHKLGSIDFVICQN  527 (576)
Q Consensus       511 e~l~~~~g~~DLVIGGp  527 (576)
                            -+.||+|+...
T Consensus       114 ------~~~fD~v~~~~  124 (242)
T 3l8d_A          114 ------NEQFEAIMAIN  124 (242)
T ss_dssp             ------TTCEEEEEEES
T ss_pred             ------CCCccEEEEcC
Confidence                  24788888643

>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A

Probab=95.60  E-value=0.02  Score=60.29  Aligned_cols=86  Identities=12%  Similarity=0.113  Sum_probs=62.4

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 008149          442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  521 (576)
Q Consensus       442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~D  521 (576)
                      .+.+|||+.||.||.+..+...+-. ..|+++|+++...+..+.+....+.. ..+..+|..++.. .+     ..+.||
T Consensus       246 ~g~~VLDlgaG~G~~t~~la~~~~~-~~v~a~D~~~~~l~~~~~~~~~~g~~-~~~~~~D~~~~~~-~~-----~~~~fD  317 (429)
T 1sqg_A          246 NGEHILDLCAAPGGKTTHILEVAPE-AQVVAVDIDEQRLSRVYDNLKRLGMK-ATVKQGDGRYPSQ-WC-----GEQQFD  317 (429)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHHCTT-CEEEEEESSTTTHHHHHHHHHHTTCC-CEEEECCTTCTHH-HH-----TTCCEE
T ss_pred             CcCeEEEECCCchHHHHHHHHHcCC-CEEEEECCCHHHHHHHHHHHHHcCCC-eEEEeCchhhchh-hc-----ccCCCC
Confidence            4678999999999999998877532 35889999999888888776544322 2345677766531 11     114799


Q ss_pred             EEEecCCCCCcccc
Q 008149          522 FVICQNSVPQIPNS  535 (576)
Q Consensus       522 LVIGGpPCQ~FS~a  535 (576)
                      +|+.-+||.++...
T Consensus       318 ~Vl~D~Pcsg~g~~  331 (429)
T 1sqg_A          318 RILLDAPCSATGVI  331 (429)
T ss_dssp             EEEEECCCCCGGGT
T ss_pred             EEEEeCCCCccccc
Confidence            99999999988654

>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}

Probab=95.59  E-value=0.032  Score=64.47  Aligned_cols=104  Identities=16%  Similarity=0.160  Sum_probs=69.6

Q ss_pred             hhhhHHHhcCCCChHHHHHHHHHhCCCCcHHHHHHHHHHhhhcccccccCCCCCCCCCCCCCCCchhh--hhhhhHHHHH
Q 008149           17 IEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQISENFEKETDDAPHDNDGTNEDKSDET--LYGTMEITLQ   94 (576)
Q Consensus        17 s~~r~~li~MGFs~e~V~kAIqe~Ge~~~~~~Ile~Ll~~q~l~~~~~e~~ds~~~~~~~ne~~~~e~--~~~~~~k~~~   94 (576)
                      .+..++|++|||+.....||+...|..+ ++.-.+.|++...-..  ..+..   ........++...  .....+.+..
T Consensus       653 ~~~l~~L~~mGf~~~~~~kal~~t~n~~-~e~a~~wl~~hmdd~d--i~~p~---~~~~~~~~~s~~~~~~~~~~e~i~~  726 (854)
T 3ihp_A          653 ESVIIQLVEMGFPMDACRKAVYYTGNSG-AEAAMNWVMSHMDDPD--FANPL---ILPGSSGPGSTSAAADPPPEDCVTT  726 (854)
T ss_dssp             CHHHHHHHHHTCCHHHHHHHHHHTTSCC-HHHHHHHHHHHTTSCG--GGSCC---CCC--------------CCHHHHHH
T ss_pred             HHHHHHHHhcCCCHHHHHHHHhhcCCCc-hHHHhHHHhhccCccc--ccccc---cccccccccccccccCCCCHHHHHH
Confidence            4578999999999999999999999988 8888999986421110  00000   0000000000000  0113457788


Q ss_pred             HHhcCCCHHHHHHHHHHhCCCCChhhhhHhHhhc
Q 008149           95 LLEMGFSENQVSLAIEKFGSKTPISELADKIFSG  128 (576)
Q Consensus        95 L~~MGFseeEas~AI~r~G~da~i~eLvD~I~Aa  128 (576)
                      |..|||+++++..|+...+.  .++.-+|.|+.-
T Consensus       727 l~~mGf~~~~a~~aL~~t~~--~~eraidwlfs~  758 (854)
T 3ihp_A          727 IVSMGFSRDQALKALRATNN--SLERAVDWIFSH  758 (854)
T ss_dssp             HHTTTCCHHHHHHHHHHTTT--CHHHHHHHHHHH
T ss_pred             HHHcCCCHHHHHHHHHhhcC--cHHHHHHhhhcC
Confidence            99999999999999999986  588888888873

>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}

Probab=95.53  E-value=0.017  Score=44.69  Aligned_cols=40  Identities=18%  Similarity=0.140  Sum_probs=34.9

Q ss_pred             hhhhhHHHhcCCC-ChHHHHHHHHHhCCCCcHHHHHHHHHHhh
Q 008149           16 HIEKRASLLMMNF-SVNEVDFALDKLGKDAPVYELVDFITAAQ   57 (576)
Q Consensus        16 ~s~~r~~li~MGF-s~e~V~kAIqe~Ge~~~~~~Ile~Ll~~q   57 (576)
                      ..++..+|++||| +.+.+.+|++..|. | ++.=+|+|+..+
T Consensus        11 ~~~~l~~L~~MGF~~~~~~~~AL~~t~g-n-ve~Ave~L~~~~   51 (53)
T 2knz_A           11 FQQQLEQLNSMGFINREANLQALIATGG-D-INAAIERLLGSQ   51 (53)
T ss_dssp             HHHHHHHHHTTTCCCHHHHHHHHHHHTS-C-HHHHHHHHHHCC
T ss_pred             HHHHHHHHHHcCCCCHHHHHHHHHHhCC-C-HHHHHHHHHHcC
Confidence            4557899999999 99999999999987 5 889999999743

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*

Probab=95.52  E-value=0.031  Score=50.58  Aligned_cols=75  Identities=16%  Similarity=0.127  Sum_probs=54.9

Q ss_pred             CCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCccE
Q 008149          443 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDF  522 (576)
Q Consensus       443 ~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~DL  522 (576)
                      +.+|||+-||.|.+...+.+.|.+   ++++|+++.+.+..+......+.....+...|+.++..         .+.+|+
T Consensus        33 ~~~vLdiG~G~G~~~~~l~~~~~~---v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~---------~~~~D~  100 (199)
T 2xvm_A           33 PGKTLDLGCGNGRNSLYLAANGYD---VDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNNLTF---------DRQYDF  100 (199)
T ss_dssp             SCEEEEETCTTSHHHHHHHHTTCE---EEEEESCHHHHHHHHHHHHHHTCTTEEEEECCGGGCCC---------CCCEEE
T ss_pred             CCeEEEEcCCCCHHHHHHHHCCCe---EEEEECCHHHHHHHHHHHHhCCCCCcEEEEcchhhCCC---------CCCceE
Confidence            469999999999999999988863   78999999998888776644332233345677776542         257899


Q ss_pred             EEecCCC
Q 008149          523 VICQNSV  529 (576)
Q Consensus       523 VIGGpPC  529 (576)
                      |+....-
T Consensus       101 v~~~~~l  107 (199)
T 2xvm_A          101 ILSTVVL  107 (199)
T ss_dssp             EEEESCG
T ss_pred             EEEcchh
Confidence            9876543

>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53

Probab=95.49  E-value=0.024  Score=52.98  Aligned_cols=82  Identities=20%  Similarity=0.083  Sum_probs=56.8

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 008149          442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  521 (576)
Q Consensus       442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~D  521 (576)
                      .+.+||||.||.|.+.+.+.+..-. ..++++|+++.+....+.+....+.....++.+|+.++.. .+     ..+.+|
T Consensus        41 ~~~~vLDiGcG~G~~~~~la~~~p~-~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~-~~-----~~~~~D  113 (214)
T 1yzh_A           41 DNPIHVEVGSGKGAFVSGMAKQNPD-INYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTD-YF-----EDGEID  113 (214)
T ss_dssp             CCCEEEEESCTTSHHHHHHHHHCTT-SEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGG-TS-----CTTCCS
T ss_pred             CCCeEEEEccCcCHHHHHHHHHCCC-CCEEEEEcCHHHHHHHHHHHHHcCCCCEEEEeCCHHHHHh-hc-----CCCCCC
Confidence            3578999999999999988776321 2478999999998888776544332223356678776431 01     124799


Q ss_pred             EEEecCCCC
Q 008149          522 FVICQNSVP  530 (576)
Q Consensus       522 LVIGGpPCQ  530 (576)
                      +|+..+|..
T Consensus       114 ~i~~~~~~~  122 (214)
T 1yzh_A          114 RLYLNFSDP  122 (214)
T ss_dssp             EEEEESCCC
T ss_pred             EEEEECCCC
Confidence            999887754

>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1

Probab=95.46  E-value=0.015  Score=41.61  Aligned_cols=37  Identities=27%  Similarity=0.227  Sum_probs=30.4

Q ss_pred             hhhhhHHHhcCCCChHHHHHHHHHhCCCCcHHHHHHHHH
Q 008149           16 HIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFIT   54 (576)
Q Consensus        16 ~s~~r~~li~MGFs~e~V~kAIqe~Ge~~~~~~Ile~Ll   54 (576)
                      ..+...+|++|||+.+.+.+|++..+. | ++.=+++|+
T Consensus         4 ~~~~i~~L~~mGf~~~~a~~AL~~~~~-n-~e~A~~~L~   40 (40)
T 1z96_A            4 LNSKIAQLVSMGFDPLEAAQALDAANG-D-LDVAASFLL   40 (40)
T ss_dssp             HHHHHHHHHHTTCCHHHHHHHHHHTTT-C-HHHHHHHHC
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHcCC-C-HHHHHHHHC
Confidence            355789999999999999999999865 5 777777763

>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}

Probab=95.46  E-value=0.021  Score=44.22  Aligned_cols=39  Identities=23%  Similarity=0.314  Sum_probs=34.1

Q ss_pred             hHHHHHHHhcCC-CHHHHHHHHHHhCCCCChhhhhHhHhhcc
Q 008149           89 MEITLQLLEMGF-SENQVSLAIEKFGSKTPISELADKIFSGQ  129 (576)
Q Consensus        89 ~~k~~~L~~MGF-seeEas~AI~r~G~da~i~eLvD~I~Aaq  129 (576)
                      .+++..|+.||| +++.+..|+..||-|  ++.-++.++..+
T Consensus        12 ~~~l~~L~~MGF~~~~~~~~AL~~t~gn--ve~Ave~L~~~~   51 (53)
T 2knz_A           12 QQQLEQLNSMGFINREANLQALIATGGD--INAAIERLLGSQ   51 (53)
T ss_dssp             HHHHHHHHTTTCCCHHHHHHHHHHHTSC--HHHHHHHHHHCC
T ss_pred             HHHHHHHHHcCCCCHHHHHHHHHHhCCC--HHHHHHHHHHcC
Confidence            468889999999 999999999999985  888889888765

>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=95.45  E-value=0.016  Score=47.89  Aligned_cols=40  Identities=23%  Similarity=0.308  Sum_probs=35.2

Q ss_pred             hHHHHHHHhcCCCHHHHHHHHHHhCCCCChhhhhHhHhhcc
Q 008149           89 MEITLQLLEMGFSENQVSLAIEKFGSKTPISELADKIFSGQ  129 (576)
Q Consensus        89 ~~k~~~L~~MGFseeEas~AI~r~G~da~i~eLvD~I~Aaq  129 (576)
                      .+++..|+.|||++++|..|+..||.. .++.=+++|+..+
T Consensus        10 e~~v~~L~~MGF~~~~a~~AL~~t~n~-~ve~A~ewL~~~~   49 (74)
T 2dag_A           10 ESVIIQLVEMGFPMDACRKAVYYTGNS-GAEAAMNWVMSHM   49 (74)
T ss_dssp             HHHHHHHHHHSCCHHHHHHHHHHHTSC-CHHHHHHHHHHHT
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHhCCC-CHHHHHHHHHhCC
Confidence            357789999999999999999999973 6888899999876

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}

Probab=95.44  E-value=0.033  Score=52.43  Aligned_cols=75  Identities=16%  Similarity=0.103  Sum_probs=53.4

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCC-CCccccccccccChhhHHHhhhccCCc
Q 008149          442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQT-GELVQIEDIQALTTKKFESLIHKLGSI  520 (576)
Q Consensus       442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~-g~l~~~~DI~~lt~~~Ie~l~~~~g~~  520 (576)
                      .+.+|||+.||.|.+.+.+.+.|.   .|+++|+++.+.+..+.+....+.. ...+..+|+.+.-        ...+.|
T Consensus        55 ~~~~vLDlGcG~G~~~~~la~~~~---~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~--------~~~~~~  123 (204)
T 3njr_A           55 RGELLWDIGGGSGSVSVEWCLAGG---RAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAAL--------ADLPLP  123 (204)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGGG--------TTSCCC
T ss_pred             CCCEEEEecCCCCHHHHHHHHcCC---EEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhhc--------ccCCCC
Confidence            457899999999999998888865   3789999999988888766544333 2234566765521        112579


Q ss_pred             cEEEecC
Q 008149          521 DFVICQN  527 (576)
Q Consensus       521 DLVIGGp  527 (576)
                      |+|+-+.
T Consensus       124 D~v~~~~  130 (204)
T 3njr_A          124 EAVFIGG  130 (204)
T ss_dssp             SEEEECS
T ss_pred             CEEEECC
Confidence            9998654

>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}

Probab=95.44  E-value=0.023  Score=58.65  Aligned_cols=80  Identities=13%  Similarity=0.111  Sum_probs=58.9

Q ss_pred             CCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccc-cChhhHHHhhhccCCcc
Q 008149          443 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQA-LTTKKFESLIHKLGSID  521 (576)
Q Consensus       443 ~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~-lt~~~Ie~l~~~~g~~D  521 (576)
                      +.+|||+. |.|.+.+.+.+.|.. ..|+++|+++.+.+..+.+....+.....++.+|+.+ +...       ..+.||
T Consensus       173 ~~~VLDlG-G~G~~~~~la~~~~~-~~v~~vDi~~~~l~~a~~~~~~~g~~~v~~~~~D~~~~l~~~-------~~~~fD  243 (373)
T 2qm3_A          173 NKDIFVLG-DDDLTSIALMLSGLP-KRIAVLDIDERLTKFIEKAANEIGYEDIEIFTFDLRKPLPDY-------ALHKFD  243 (373)
T ss_dssp             TCEEEEES-CTTCHHHHHHHHTCC-SEEEEECSCHHHHHHHHHHHHHHTCCCEEEECCCTTSCCCTT-------TSSCBS
T ss_pred             CCEEEEEC-CCCHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHHHHcCCCCEEEEEChhhhhchhh-------ccCCcc
Confidence            57899999 999999999888752 3488999999999888887654432223356788876 4321       014799


Q ss_pred             EEEecCCCCC
Q 008149          522 FVICQNSVPQ  531 (576)
Q Consensus       522 LVIGGpPCQ~  531 (576)
                      +|+..+||..
T Consensus       244 ~Vi~~~p~~~  253 (373)
T 2qm3_A          244 TFITDPPETL  253 (373)
T ss_dssp             EEEECCCSSH
T ss_pred             EEEECCCCch
Confidence            9999999853

>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*

Probab=95.42  E-value=0.015  Score=52.17  Aligned_cols=37  Identities=24%  Similarity=0.384  Sum_probs=33.7

Q ss_pred             HHHHHHhcCCCHHHHHHHHHHhCCCCChhhhhHhHhhcc
Q 008149           91 ITLQLLEMGFSENQVSLAIEKFGSKTPISELADKIFSGQ  129 (576)
Q Consensus        91 k~~~L~~MGFseeEas~AI~r~G~da~i~eLvD~I~Aaq  129 (576)
                      -+.+|+.||||++.|.+|+..+|.  +++..+++|++-+
T Consensus        11 ~v~~l~~MGFp~~~~~kAl~~~g~--~~e~amewL~~h~   47 (118)
T 4ae4_A           11 CVETVVNMGYSYECVLRAMKAAGA--NIEQILDYLFAHG   47 (118)
T ss_dssp             HHHHHHHTTCCHHHHHHHHHHHCS--CHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHCc--CHHHHHHHHHHhc
Confidence            345899999999999999999998  7999999999975

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A

Probab=95.41  E-value=0.022  Score=52.16  Aligned_cols=73  Identities=16%  Similarity=0.233  Sum_probs=52.4

Q ss_pred             CCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 008149          441 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI  520 (576)
Q Consensus       441 ~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~  520 (576)
                      +.+ +|||+-||.|.+...|.+.|.+   ++++|+++.+....+......+. ...+...|+.++..        ..+.+
T Consensus        29 ~~~-~vLdiGcG~G~~~~~l~~~~~~---v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~--------~~~~f   95 (202)
T 2kw5_A           29 PQG-KILCLAEGEGRNACFLASLGYE---VTAVDQSSVGLAKAKQLAQEKGV-KITTVQSNLADFDI--------VADAW   95 (202)
T ss_dssp             CSS-EEEECCCSCTHHHHHHHTTTCE---EEEECSSHHHHHHHHHHHHHHTC-CEEEECCBTTTBSC--------CTTTC
T ss_pred             CCC-CEEEECCCCCHhHHHHHhCCCe---EEEEECCHHHHHHHHHHHHhcCC-ceEEEEcChhhcCC--------CcCCc
Confidence            345 9999999999999999998873   78999999988877766543321 22345567766531        12478


Q ss_pred             cEEEec
Q 008149          521 DFVICQ  526 (576)
Q Consensus       521 DLVIGG  526 (576)
                      |+|+..
T Consensus        96 D~v~~~  101 (202)
T 2kw5_A           96 EGIVSI  101 (202)
T ss_dssp             SEEEEE
T ss_pred             cEEEEE
Confidence            999974

>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A

Probab=95.39  E-value=0.027  Score=54.84  Aligned_cols=96  Identities=15%  Similarity=0.055  Sum_probs=60.8

Q ss_pred             Hhhhhhccc--cchhhhccccccCCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCc
Q 008149          419 SLRHCFQTD--TLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGEL  496 (576)
Q Consensus       419 ~Lg~sf~vd--tv~~~lsvLK~~f~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l  496 (576)
                      .+|..|-++  .+...+..+.  ...+-+|||+.||.|.++..|.+.|.   .|+++|+|+......+.+...  .....
T Consensus         7 ~~gQ~fl~d~~~~~~i~~~~~--~~~~~~VLDiG~G~G~lt~~l~~~~~---~v~~vD~~~~~~~~a~~~~~~--~~~v~   79 (244)
T 1qam_A            7 KHSQNFITSKHNIDKIMTNIR--LNEHDNIFEIGSGKGHFTLELVQRCN---FVTAIEIDHKLCKTTENKLVD--HDNFQ   79 (244)
T ss_dssp             ---CCBCCCHHHHHHHHTTCC--CCTTCEEEEECCTTSHHHHHHHHHSS---EEEEECSCHHHHHHHHHHTTT--CCSEE
T ss_pred             cCCccccCCHHHHHHHHHhCC--CCCCCEEEEEeCCchHHHHHHHHcCC---eEEEEECCHHHHHHHHHhhcc--CCCeE
Confidence            345555333  3334444442  13467899999999999999998884   478999999999888876532  12233


Q ss_pred             cccccccccChhhHHHhhhccCCccEEEecCCC
Q 008149          497 VQIEDIQALTTKKFESLIHKLGSIDFVICQNSV  529 (576)
Q Consensus       497 ~~~~DI~~lt~~~Ie~l~~~~g~~DLVIGGpPC  529 (576)
                      ++.+|+.++....       ...+ .|++.+|=
T Consensus        80 ~~~~D~~~~~~~~-------~~~~-~vv~nlPy  104 (244)
T 1qam_A           80 VLNKDILQFKFPK-------NQSY-KIFGNIPY  104 (244)
T ss_dssp             EECCCGGGCCCCS-------SCCC-EEEEECCG
T ss_pred             EEEChHHhCCccc-------CCCe-EEEEeCCc
Confidence            5678887765311       1234 57777764

>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1

Probab=95.36  E-value=0.015  Score=46.75  Aligned_cols=39  Identities=26%  Similarity=0.400  Sum_probs=34.1

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHhCCCCChhhhhHhHhhcc
Q 008149           90 EITLQLLEMGFSENQVSLAIEKFGSKTPISELADKIFSGQ  129 (576)
Q Consensus        90 ~k~~~L~~MGFseeEas~AI~r~G~da~i~eLvD~I~Aaq  129 (576)
                      +++..|+.|||++++|..|+..||.. .++.=+++|+..+
T Consensus        21 ~~i~~L~~MGF~~~~a~~AL~~t~~~-nve~A~ewL~~~~   59 (64)
T 2cpw_A           21 SALDVLLSMGFPRARAQKALASTGGR-SVQTACDWLFSHS   59 (64)
T ss_dssp             CHHHHHHHHTCCHHHHHHHHHHTTTS-CHHHHHHHHHSCC
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHcCCC-CHHHHHHHHHhCC
Confidence            47889999999999999999999973 5888899998755

>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B

Probab=95.33  E-value=0.019  Score=44.37  Aligned_cols=38  Identities=16%  Similarity=0.128  Sum_probs=33.4

Q ss_pred             hhhhhHHHhcCCC-ChHHHHHHHHHhCCCCcHHHHHHHHHH
Q 008149           16 HIEKRASLLMMNF-SVNEVDFALDKLGKDAPVYELVDFITA   55 (576)
Q Consensus        16 ~s~~r~~li~MGF-s~e~V~kAIqe~Ge~~~~~~Ile~Ll~   55 (576)
                      ..+...+|++||| +.+.+.+|++..|. | ++.=+|+|++
T Consensus        12 ~~~~l~~L~~MGF~~~~~~~~AL~~t~g-n-~e~A~e~L~~   50 (52)
T 2jy5_A           12 FQQQLEQLSAMGFLNREANLQALIATGG-D-INAAIERLLG   50 (52)
T ss_dssp             THHHHHHHHHTTCCCHHHHHHHHHHHTT-C-HHHHHHHHTT
T ss_pred             HHHHHHHHHHcCCCCHHHHHHHHHHhCC-C-HHHHHHHHHh
Confidence            4558899999999 99999999999987 5 8899999985

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}

Probab=95.29  E-value=0.04  Score=50.95  Aligned_cols=70  Identities=20%  Similarity=0.236  Sum_probs=52.4

Q ss_pred             CCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCC
Q 008149          440 FPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGS  519 (576)
Q Consensus       440 f~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~  519 (576)
                      .+.+.+|||+-||.|.+...|.+.|..   ++++|+++......+...      +..+...|+.++..         .+.
T Consensus        41 ~~~~~~vLDiGcG~G~~~~~l~~~~~~---v~~vD~s~~~~~~a~~~~------~~~~~~~d~~~~~~---------~~~  102 (211)
T 3e23_A           41 LPAGAKILELGCGAGYQAEAMLAAGFD---VDATDGSPELAAEASRRL------GRPVRTMLFHQLDA---------IDA  102 (211)
T ss_dssp             SCTTCEEEESSCTTSHHHHHHHHTTCE---EEEEESCHHHHHHHHHHH------TSCCEECCGGGCCC---------CSC
T ss_pred             cCCCCcEEEECCCCCHHHHHHHHcCCe---EEEECCCHHHHHHHHHhc------CCceEEeeeccCCC---------CCc
Confidence            345789999999999999999999874   678999999887776643      12245677776651         257


Q ss_pred             ccEEEecC
Q 008149          520 IDFVICQN  527 (576)
Q Consensus       520 ~DLVIGGp  527 (576)
                      ||+|+...
T Consensus       103 fD~v~~~~  110 (211)
T 3e23_A          103 YDAVWAHA  110 (211)
T ss_dssp             EEEEEECS
T ss_pred             EEEEEecC
Confidence            89998654

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*

Probab=95.24  E-value=0.029  Score=50.02  Aligned_cols=79  Identities=16%  Similarity=0.156  Sum_probs=54.4

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCC-CCCccccccccccChhhHHHhhhccCCc
Q 008149          442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQ-TGELVQIEDIQALTTKKFESLIHKLGSI  520 (576)
Q Consensus       442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~-~g~l~~~~DI~~lt~~~Ie~l~~~~g~~  520 (576)
                      .+.+|||+.||.|.+...+.+.+   ..++++|+++.+.+..+.+....+. ....+..+|+.+        .....+.+
T Consensus        33 ~~~~vldiG~G~G~~~~~l~~~~---~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~--------~~~~~~~~  101 (192)
T 1l3i_A           33 KNDVAVDVGCGTGGVTLELAGRV---RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPE--------ALCKIPDI  101 (192)
T ss_dssp             TTCEEEEESCTTSHHHHHHHTTS---SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHH--------HHTTSCCE
T ss_pred             CCCEEEEECCCCCHHHHHHHHhc---CEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHH--------hcccCCCC
Confidence            46789999999999999998888   3578999999998888776644322 111233444433        11112579


Q ss_pred             cEEEecCCCCC
Q 008149          521 DFVICQNSVPQ  531 (576)
Q Consensus       521 DLVIGGpPCQ~  531 (576)
                      |+|+...+...
T Consensus       102 D~v~~~~~~~~  112 (192)
T 1l3i_A          102 DIAVVGGSGGE  112 (192)
T ss_dssp             EEEEESCCTTC
T ss_pred             CEEEECCchHH
Confidence            99998876544

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*

Probab=95.23  E-value=0.035  Score=53.49  Aligned_cols=82  Identities=15%  Similarity=0.152  Sum_probs=59.0

Q ss_pred             CCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCC-CccccccccccChhhHHHhhhccCC
Q 008149          441 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGS  519 (576)
Q Consensus       441 ~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g-~l~~~~DI~~lt~~~Ie~l~~~~g~  519 (576)
                      +.+.+|||+-||.|.+...+.+.+.  ..|+++|+++......+......+..+ ..+..+|+.++...        .+.
T Consensus        45 ~~~~~vLDiGcG~G~~~~~la~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~--------~~~  114 (267)
T 3kkz_A           45 TEKSLIADIGCGTGGQTMVLAGHVT--GQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDLPFR--------NEE  114 (267)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHTTCS--SEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCC--------TTC
T ss_pred             CCCCEEEEeCCCCCHHHHHHHhccC--CEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcChhhCCCC--------CCC
Confidence            4578999999999999999988853  247899999998888777654433222 33566788776421        257


Q ss_pred             ccEEEecCCCCCc
Q 008149          520 IDFVICQNSVPQI  532 (576)
Q Consensus       520 ~DLVIGGpPCQ~F  532 (576)
                      ||+|+.......+
T Consensus       115 fD~i~~~~~~~~~  127 (267)
T 3kkz_A          115 LDLIWSEGAIYNI  127 (267)
T ss_dssp             EEEEEESSCGGGT
T ss_pred             EEEEEEcCCceec
Confidence            9999977665443

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*

Probab=95.22  E-value=0.019  Score=55.08  Aligned_cols=78  Identities=18%  Similarity=0.157  Sum_probs=57.0

Q ss_pred             hccccccCCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHH
Q 008149          433 LSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFES  512 (576)
Q Consensus       433 lsvLK~~f~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~  512 (576)
                      ...|....+.+.+|||+-||.|.+...|.+.|.+   |+++|+++......+....     ...+..+|+.++..     
T Consensus        41 ~~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~---v~gvD~s~~~~~~a~~~~~-----~~~~~~~d~~~~~~-----  107 (263)
T 3pfg_A           41 AALVRRHSPKAASLLDVACGTGMHLRHLADSFGT---VEGLELSADMLAIARRRNP-----DAVLHHGDMRDFSL-----  107 (263)
T ss_dssp             HHHHHHHCTTCCEEEEETCTTSHHHHHHTTTSSE---EEEEESCHHHHHHHHHHCT-----TSEEEECCTTTCCC-----
T ss_pred             HHHHHhhCCCCCcEEEeCCcCCHHHHHHHHcCCe---EEEEECCHHHHHHHHhhCC-----CCEEEECChHHCCc-----
Confidence            3444555567789999999999999999999863   7899999998887765432     23355678776542     


Q ss_pred             hhhccCCccEEEecC
Q 008149          513 LIHKLGSIDFVICQN  527 (576)
Q Consensus       513 l~~~~g~~DLVIGGp  527 (576)
                          .+.||+|+...
T Consensus       108 ----~~~fD~v~~~~  118 (263)
T 3pfg_A          108 ----GRRFSAVTCMF  118 (263)
T ss_dssp             ----SCCEEEEEECT
T ss_pred             ----cCCcCEEEEcC
Confidence                14788888654

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*

Probab=95.19  E-value=0.039  Score=52.67  Aligned_cols=79  Identities=20%  Similarity=0.209  Sum_probs=56.0

Q ss_pred             CCCcccccCCCCChhHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHhhhcCCCC-CccccccccccChhhHHHhhhccCC
Q 008149          442 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGS  519 (576)
Q Consensus       442 ~~l~VLsLFSGiGG~slGL~~a-Gi~~k~vvavEid~~a~~t~k~~~~~tn~~g-~l~~~~DI~~lt~~~Ie~l~~~~g~  519 (576)
                      .+.+|||+.||.|++...+.+. |=. ..++++|+++...+..+.+....+... ..+..+|+.+.-.         .+.
T Consensus        93 ~~~~vldiG~G~G~~~~~l~~~~~~~-~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~---------~~~  162 (255)
T 3mb5_A           93 PGDFIVEAGVGSGALTLFLANIVGPE-GRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYEGIE---------EEN  162 (255)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHHCTT-SEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGGCCC---------CCS
T ss_pred             CCCEEEEecCCchHHHHHHHHHhCCC-eEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchhhccC---------CCC
Confidence            4678999999999999999887 411 347899999998888877665443222 2345667764311         146


Q ss_pred             ccEEEecCCCC
Q 008149          520 IDFVICQNSVP  530 (576)
Q Consensus       520 ~DLVIGGpPCQ  530 (576)
                      +|+|+..+|+.
T Consensus       163 ~D~v~~~~~~~  173 (255)
T 3mb5_A          163 VDHVILDLPQP  173 (255)
T ss_dssp             EEEEEECSSCG
T ss_pred             cCEEEECCCCH
Confidence            99999987765

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}

Probab=95.16  E-value=0.024  Score=53.90  Aligned_cols=73  Identities=19%  Similarity=0.144  Sum_probs=53.7

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 008149          442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  521 (576)
Q Consensus       442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~D  521 (576)
                      .+.+|||+-||.|.+...+.+.|..  .|+++|+++......+....   .....+..+|+.++..        .-+.||
T Consensus        44 ~~~~vLD~GcG~G~~~~~l~~~~~~--~v~~vD~s~~~~~~a~~~~~---~~~~~~~~~d~~~~~~--------~~~~fD  110 (253)
T 3g5l_A           44 NQKTVLDLGCGFGWHCIYAAEHGAK--KVLGIDLSERMLTEAKRKTT---SPVVCYEQKAIEDIAI--------EPDAYN  110 (253)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHTTCS--EEEEEESCHHHHHHHHHHCC---CTTEEEEECCGGGCCC--------CTTCEE
T ss_pred             CCCEEEEECCCCCHHHHHHHHcCCC--EEEEEECCHHHHHHHHHhhc---cCCeEEEEcchhhCCC--------CCCCeE
Confidence            4689999999999999999999873  47899999998887766432   1222355677776542        115789


Q ss_pred             EEEecC
Q 008149          522 FVICQN  527 (576)
Q Consensus       522 LVIGGp  527 (576)
                      +|+...
T Consensus       111 ~v~~~~  116 (253)
T 3g5l_A          111 VVLSSL  116 (253)
T ss_dssp             EEEEES
T ss_pred             EEEEch
Confidence            998755

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43

Probab=95.16  E-value=0.038  Score=51.58  Aligned_cols=74  Identities=16%  Similarity=0.112  Sum_probs=54.1

Q ss_pred             CCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 008149          441 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI  520 (576)
Q Consensus       441 ~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~  520 (576)
                      +.+.+|||+-||.|.+...+.+.|.+   +.++|+++......+......+. ...+..+|+.++..         .+.+
T Consensus        36 ~~~~~vLdiG~G~G~~~~~l~~~~~~---~~~~D~s~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~---------~~~f  102 (246)
T 1y8c_A           36 LVFDDYLDLACGTGNLTENLCPKFKN---TWAVDLSQEMLSEAENKFRSQGL-KPRLACQDISNLNI---------NRKF  102 (246)
T ss_dssp             CCTTEEEEETCTTSTTHHHHGGGSSE---EEEECSCHHHHHHHHHHHHHTTC-CCEEECCCGGGCCC---------SCCE
T ss_pred             CCCCeEEEeCCCCCHHHHHHHHCCCc---EEEEECCHHHHHHHHHHHhhcCC-CeEEEecccccCCc---------cCCc
Confidence            45689999999999999999998863   78899999988887776543321 22345677766542         1579


Q ss_pred             cEEEecC
Q 008149          521 DFVICQN  527 (576)
Q Consensus       521 DLVIGGp  527 (576)
                      |+|+...
T Consensus       103 D~v~~~~  109 (246)
T 1y8c_A          103 DLITCCL  109 (246)
T ss_dssp             EEEEECT
T ss_pred             eEEEEcC
Confidence            9999644

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7

Probab=95.15  E-value=0.048  Score=51.11  Aligned_cols=79  Identities=16%  Similarity=0.127  Sum_probs=56.9

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 008149          442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  521 (576)
Q Consensus       442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~D  521 (576)
                      .+.+|||+-||.|.+...+...|.   .|+++|+++......+......+  ...+..+|+.+.-.        ..+.||
T Consensus        70 ~~~~vLdiG~G~G~~~~~l~~~~~---~v~~vD~~~~~~~~a~~~~~~~~--~v~~~~~d~~~~~~--------~~~~fD  136 (231)
T 1vbf_A           70 KGQKVLEIGTGIGYYTALIAEIVD---KVVSVEINEKMYNYASKLLSYYN--NIKLILGDGTLGYE--------EEKPYD  136 (231)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHSS---EEEEEESCHHHHHHHHHHHTTCS--SEEEEESCGGGCCG--------GGCCEE
T ss_pred             CCCEEEEEcCCCCHHHHHHHHHcC---EEEEEeCCHHHHHHHHHHHhhcC--CeEEEECCcccccc--------cCCCcc
Confidence            467899999999999999998883   47899999999888877654321  22345567655211        125799


Q ss_pred             EEEecCCCCCcc
Q 008149          522 FVICQNSVPQIP  533 (576)
Q Consensus       522 LVIGGpPCQ~FS  533 (576)
                      +|+...++..+.
T Consensus       137 ~v~~~~~~~~~~  148 (231)
T 1vbf_A          137 RVVVWATAPTLL  148 (231)
T ss_dssp             EEEESSBBSSCC
T ss_pred             EEEECCcHHHHH
Confidence            999888776553

>2crn_A Ubash3A protein; compact three-helix bundle, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1

Probab=95.13  E-value=0.019  Score=46.29  Aligned_cols=38  Identities=24%  Similarity=0.252  Sum_probs=34.6

Q ss_pred             HHHHHHhcCCCHHHHHHHHHHhCCCCChhhhhHhHhhcc
Q 008149           91 ITLQLLEMGFSENQVSLAIEKFGSKTPISELADKIFSGQ  129 (576)
Q Consensus        91 k~~~L~~MGFseeEas~AI~r~G~da~i~eLvD~I~Aaq  129 (576)
                      .+..|+.|||+++.|..|+-.+|.. .++.=++.|+..+
T Consensus        12 ~v~~L~~MGF~~~~a~~AL~~t~n~-~~e~A~~wL~~h~   49 (64)
T 2crn_A           12 LLEPLLAMGFPVHTALKALAATGRK-TAEEALAWLHDHC   49 (64)
T ss_dssp             SHHHHHHTSCCHHHHHHHHHHHTSC-CHHHHHHHHHHHS
T ss_pred             HHHHHHHcCCCHHHHHHHHHHhCCC-CHHHHHHHHHhCC
Confidence            6789999999999999999999983 7999999999877

>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*

Probab=95.13  E-value=0.04  Score=56.13  Aligned_cols=85  Identities=13%  Similarity=0.101  Sum_probs=57.0

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 008149          442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  521 (576)
Q Consensus       442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~D  521 (576)
                      .+-+|||++||.||.+..+-+.+=. ..|+++|+|+.+....+.+....+ ....++.+|..++.. .+..+  ..+.||
T Consensus        26 ~g~~vLD~g~G~G~~s~~la~~~~~-~~VigvD~d~~al~~A~~~~~~~g-~~v~~v~~d~~~l~~-~l~~~--g~~~~D  100 (301)
T 1m6y_A           26 DEKIILDCTVGEGGHSRAILEHCPG-CRIIGIDVDSEVLRIAEEKLKEFS-DRVSLFKVSYREADF-LLKTL--GIEKVD  100 (301)
T ss_dssp             TTCEEEETTCTTSHHHHHHHHHCTT-CEEEEEESCHHHHHHHHHHTGGGT-TTEEEEECCGGGHHH-HHHHT--TCSCEE
T ss_pred             CCCEEEEEeCCcCHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHhcC-CcEEEEECCHHHHHH-HHHhc--CCCCCC
Confidence            3568999999999999988775211 247899999999988877654332 122345677765531 11110  124799


Q ss_pred             EEEecCCCCC
Q 008149          522 FVICQNSVPQ  531 (576)
Q Consensus       522 LVIGGpPCQ~  531 (576)
                      .|+--+||..
T Consensus       101 ~Vl~D~gvSs  110 (301)
T 1m6y_A          101 GILMDLGVST  110 (301)
T ss_dssp             EEEEECSCCH
T ss_pred             EEEEcCccch
Confidence            9999888853

>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=95.08  E-value=0.032  Score=47.21  Aligned_cols=39  Identities=18%  Similarity=0.135  Sum_probs=33.9

Q ss_pred             hhhhhHHHhcCCCChHHHHHHHHHhCCCCcHHHHHHHHHHh
Q 008149           16 HIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAA   56 (576)
Q Consensus        16 ~s~~r~~li~MGFs~e~V~kAIqe~Ge~~~~~~Ile~Ll~~   56 (576)
                      ..+...+|++|||+.+.+.+|+...+ .+ ++.=+++|+..
T Consensus        29 ~e~~i~~L~~MGF~~~~a~~AL~~t~-~n-ve~A~ewL~~~   67 (83)
T 2dai_A           29 DEAALRQLTEMGFPENRATKALQLNH-MS-VPQAMEWLIEH   67 (83)
T ss_dssp             CHHHHHHHHHHTCCHHHHHHHHHHTT-SC-HHHHHHHHHHG
T ss_pred             CHHHHHHHHHcCCCHHHHHHHHHHhC-CC-HHHHHHHHHHC
Confidence            45678999999999999999999984 35 89999999975

>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}

Probab=95.06  E-value=0.023  Score=65.62  Aligned_cols=104  Identities=13%  Similarity=0.085  Sum_probs=61.0

Q ss_pred             hhhhhccccchhhhcc-----ccccCCCCCcccccCCCCChhHHHHHHc-C-CceeeEEEeeCCHHHHHHH--HHHhhhc
Q 008149          420 LRHCFQTDTLGYHLSV-----LKSMFPGGLTMLSVFSGIGGAEVTLHRL-G-IKLKGVISIETSETNRRIL--KRWWESS  490 (576)
Q Consensus       420 Lg~sf~vdtv~~~lsv-----LK~~f~~~l~VLsLFSGiGG~slGL~~a-G-i~~k~vvavEid~~a~~t~--k~~~~~t  490 (576)
                      .|..+....++..+.-     +.+..+.+.+|+|.+||.|++-+++.+. + ..-..++++||++.+.++.  +.+...+
T Consensus       294 ~GqFYTP~eLA~lMVeLA~ill~~~l~~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN  373 (878)
T 3s1s_A          294 EGVVPTDIELGKVLSIISQHILGRPLTEDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFP  373 (878)
T ss_dssp             CBSSSCCHHHHHHHHHHHHHHHCSCCCTTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTST
T ss_pred             CceEcCCHHHHHHHHHHHhhhccccCCCCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHh
Confidence            3444555555544322     2333456789999999999999887653 2 2123578999999988776  4332110


Q ss_pred             ----CCCCCccccccccccChhhHHHhhhccCCccEEEecCCCC
Q 008149          491 ----GQTGELVQIEDIQALTTKKFESLIHKLGSIDFVICQNSVP  530 (576)
Q Consensus       491 ----n~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~DLVIGGpPCQ  530 (576)
                          +.....+..+|....+..       ..+.||+|||=||=-
T Consensus       374 ~LlhGi~~~~I~~dD~L~~~~~-------~~~kFDVVIgNPPYg  410 (878)
T 3s1s_A          374 QLVSSNNAPTITGEDVCSLNPE-------DFANVSVVVMNPPYV  410 (878)
T ss_dssp             TTCBTTBCCEEECCCGGGCCGG-------GGTTEEEEEECCBCC
T ss_pred             hhhcCCCcceEEecchhccccc-------ccCCCCEEEECCCcc
Confidence                000112233444333211       236899999999974

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*

Probab=95.02  E-value=0.067  Score=50.73  Aligned_cols=81  Identities=10%  Similarity=0.078  Sum_probs=58.1

Q ss_pred             CCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCC-CccccccccccChhhHHHhhhccCC
Q 008149          441 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGS  519 (576)
Q Consensus       441 ~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g-~l~~~~DI~~lt~~~Ie~l~~~~g~  519 (576)
                      +.+.+|||+-||.|.+...+.+.+-.  .|+++|+++......+......+... ..+..+|+.++...        .+.
T Consensus        45 ~~~~~vLDiG~G~G~~~~~l~~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~--------~~~  114 (257)
T 3f4k_A           45 TDDAKIADIGCGTGGQTLFLADYVKG--QITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNLPFQ--------NEE  114 (257)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHCCS--EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCSSC--------TTC
T ss_pred             CCCCeEEEeCCCCCHHHHHHHHhCCC--eEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCCCC--------CCC
Confidence            34679999999999999999888642  57899999998888877655443222 23566788766421        257


Q ss_pred             ccEEEecCCCCC
Q 008149          520 IDFVICQNSVPQ  531 (576)
Q Consensus       520 ~DLVIGGpPCQ~  531 (576)
                      ||+|+.......
T Consensus       115 fD~v~~~~~l~~  126 (257)
T 3f4k_A          115 LDLIWSEGAIYN  126 (257)
T ss_dssp             EEEEEEESCSCC
T ss_pred             EEEEEecChHhh
Confidence            999997755444

>1dv0_A DNA repair protein HHR23A; helical bundle, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 1f4i_A

Probab=95.00  E-value=0.0087  Score=45.41  Aligned_cols=37  Identities=24%  Similarity=0.169  Sum_probs=31.2

Q ss_pred             hHHHHHHHhcCCCHHHHHHHHHHhCCCCChhhhhHhHhh
Q 008149           89 MEITLQLLEMGFSENQVSLAIEKFGSKTPISELADKIFS  127 (576)
Q Consensus        89 ~~k~~~L~~MGFseeEas~AI~r~G~da~i~eLvD~I~A  127 (576)
                      .+++..|+.|||++..|..|+..||.  +++.=++.++.
T Consensus         5 ~eaI~rL~~mGF~~~~a~~Al~a~~~--n~e~A~~~Lf~   41 (47)
T 1dv0_A            5 KEAIERLKALGFPESLVIQAYFACEK--NENLAANFLLS   41 (47)
T ss_dssp             HHHHTTTTTTTCCHHHHHHHHTTTTS--CHHHHHHHTTS
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHcCC--CHHHHHHHHHh
Confidence            45788999999999999999999994  46666777775

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}

Probab=95.00  E-value=0.052  Score=51.36  Aligned_cols=87  Identities=15%  Similarity=0.114  Sum_probs=59.2

Q ss_pred             ccCCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhcc
Q 008149          438 SMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKL  517 (576)
Q Consensus       438 ~~f~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~  517 (576)
                      ...+.+.+|||+-||.|.+...|.+.|.   .|+++|+++.+....+....   .....+..+|+.++....-  + ...
T Consensus        52 ~~~~~~~~vLD~GcG~G~~~~~la~~~~---~v~gvD~s~~~~~~a~~~~~---~~~~~~~~~d~~~~~~~~~--~-~~~  122 (245)
T 3ggd_A           52 LLFNPELPLIDFACGNGTQTKFLSQFFP---RVIGLDVSKSALEIAAKENT---AANISYRLLDGLVPEQAAQ--I-HSE  122 (245)
T ss_dssp             TTSCTTSCEEEETCTTSHHHHHHHHHSS---CEEEEESCHHHHHHHHHHSC---CTTEEEEECCTTCHHHHHH--H-HHH
T ss_pred             hccCCCCeEEEEcCCCCHHHHHHHHhCC---CEEEEECCHHHHHHHHHhCc---ccCceEEECcccccccccc--c-ccc
Confidence            3345678899999999999999999886   37899999998887776532   1223356678877643211  1 001


Q ss_pred             CCccEEEecCCCCCcc
Q 008149          518 GSIDFVICQNSVPQIP  533 (576)
Q Consensus       518 g~~DLVIGGpPCQ~FS  533 (576)
                      ..+|+|+...-..-+.
T Consensus       123 ~~~d~v~~~~~~~~~~  138 (245)
T 3ggd_A          123 IGDANIYMRTGFHHIP  138 (245)
T ss_dssp             HCSCEEEEESSSTTSC
T ss_pred             cCccEEEEcchhhcCC
Confidence            2489999876555444

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=94.92  E-value=0.031  Score=58.22  Aligned_cols=78  Identities=13%  Similarity=0.046  Sum_probs=53.9

Q ss_pred             CCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCC---CccccccccccChhhHHHhhhccCC
Q 008149          443 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG---ELVQIEDIQALTTKKFESLIHKLGS  519 (576)
Q Consensus       443 ~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g---~l~~~~DI~~lt~~~Ie~l~~~~g~  519 (576)
                      +.+||||+||.|.+.+.+.+.+-. ..|+++|+++.+.+..+.+....+...   ..+..+|+.+.-         ..+.
T Consensus       223 ~~~VLDlGcG~G~~s~~la~~~p~-~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~~~---------~~~~  292 (375)
T 4dcm_A          223 EGEIVDLGCGNGVIGLTLLDKNPQ-AKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGV---------EPFR  292 (375)
T ss_dssp             CSEEEEETCTTCHHHHHHHHHCTT-CEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTTTC---------CTTC
T ss_pred             CCeEEEEeCcchHHHHHHHHHCCC-CEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhccC---------CCCC
Confidence            378999999999999999888411 247899999999988887765432110   112445554311         1247


Q ss_pred             ccEEEecCCCC
Q 008149          520 IDFVICQNSVP  530 (576)
Q Consensus       520 ~DLVIGGpPCQ  530 (576)
                      ||+|+..||..
T Consensus       293 fD~Ii~nppfh  303 (375)
T 4dcm_A          293 FNAVLCNPPFH  303 (375)
T ss_dssp             EEEEEECCCC-
T ss_pred             eeEEEECCCcc
Confidence            99999999864

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1

Probab=94.88  E-value=0.05  Score=54.63  Aligned_cols=84  Identities=21%  Similarity=0.212  Sum_probs=59.3

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 008149          442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  521 (576)
Q Consensus       442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~D  521 (576)
                      .+.+|||+.||.|++...+.+.|-+-..|+++|+++...+..+.+....+.....+..+|+.+...        ..+.||
T Consensus        75 ~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~~v~~~~~d~~~~~~--------~~~~fD  146 (317)
T 1dl5_A           75 KGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVP--------EFSPYD  146 (317)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCG--------GGCCEE
T ss_pred             CcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEECChhhccc--------cCCCeE
Confidence            467999999999999988887764212378999999988887776654332223345677765422        125799


Q ss_pred             EEEecCCCCCcc
Q 008149          522 FVICQNSVPQIP  533 (576)
Q Consensus       522 LVIGGpPCQ~FS  533 (576)
                      +|+...++..+.
T Consensus       147 ~Iv~~~~~~~~~  158 (317)
T 1dl5_A          147 VIFVTVGVDEVP  158 (317)
T ss_dssp             EEEECSBBSCCC
T ss_pred             EEEEcCCHHHHH
Confidence            999988877653

>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A

Probab=94.88  E-value=0.027  Score=56.26  Aligned_cols=77  Identities=12%  Similarity=0.118  Sum_probs=50.5

Q ss_pred             CcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCC---------CccccccccccChhhHHHhh
Q 008149          444 LTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG---------ELVQIEDIQALTTKKFESLI  514 (576)
Q Consensus       444 l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g---------~l~~~~DI~~lt~~~Ie~l~  514 (576)
                      .+|||+|||.|..++-|-..|..   |++||+++....+++.+........         ..++.+|..++        .
T Consensus        90 ~~VLDl~~G~G~dal~lA~~g~~---V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D~~~~--------L  158 (258)
T 2oyr_A           90 PDVVDATAGLGRDAFVLASVGCR---VRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTA--------L  158 (258)
T ss_dssp             CCEEETTCTTCHHHHHHHHHTCC---EEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHH--------S
T ss_pred             CEEEEcCCcCCHHHHHHHHcCCE---EEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECCHHHH--------H
Confidence            78999999999999988888863   7899999987666665443221000         11233444332        1


Q ss_pred             hc-cCCccEEEecCCCCC
Q 008149          515 HK-LGSIDFVICQNSVPQ  531 (576)
Q Consensus       515 ~~-~g~~DLVIGGpPCQ~  531 (576)
                      .. ...||+|+--||=..
T Consensus       159 ~~~~~~fDvV~lDP~y~~  176 (258)
T 2oyr_A          159 TDITPRPQVVYLDPMFPH  176 (258)
T ss_dssp             TTCSSCCSEEEECCCCCC
T ss_pred             HhCcccCCEEEEcCCCCC
Confidence            11 136999999887643

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}

Probab=94.85  E-value=0.043  Score=50.75  Aligned_cols=80  Identities=18%  Similarity=0.116  Sum_probs=55.9

Q ss_pred             CCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 008149          441 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI  520 (576)
Q Consensus       441 ~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~  520 (576)
                      +.+.+|||+-||.|.+...+.+.+-+-..++++|+++......+......+.....+..+|+.++..        .-+.+
T Consensus        36 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~--------~~~~f  107 (219)
T 3dh0_A           36 KEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEENKIPL--------PDNTV  107 (219)
T ss_dssp             CTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECBTTBCSS--------CSSCE
T ss_pred             CCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCcEEEEecccccCCC--------CCCCe
Confidence            3467999999999999999988762212478999999988888776654432333355677776541        12469


Q ss_pred             cEEEecCC
Q 008149          521 DFVICQNS  528 (576)
Q Consensus       521 DLVIGGpP  528 (576)
                      |+|+....
T Consensus       108 D~v~~~~~  115 (219)
T 3dh0_A          108 DFIFMAFT  115 (219)
T ss_dssp             EEEEEESC
T ss_pred             eEEEeehh
Confidence            99996543

>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0

Probab=94.84  E-value=0.037  Score=51.86  Aligned_cols=78  Identities=21%  Similarity=0.197  Sum_probs=53.3

Q ss_pred             CCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChh-hHHHhhh--c
Q 008149          440 FPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTK-KFESLIH--K  516 (576)
Q Consensus       440 f~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~-~Ie~l~~--~  516 (576)
                      ++.+.+||||-||.||++..+.+.+-   .|+++|+++..           ..++..++.+|+++.... .+.....  .
T Consensus        23 ~~~g~~VLDlG~G~G~~s~~la~~~~---~V~gvD~~~~~-----------~~~~v~~~~~D~~~~~~~~~~~~~~~~~~   88 (191)
T 3dou_A           23 VRKGDAVIEIGSSPGGWTQVLNSLAR---KIISIDLQEME-----------EIAGVRFIRCDIFKETIFDDIDRALREEG   88 (191)
T ss_dssp             SCTTCEEEEESCTTCHHHHHHTTTCS---EEEEEESSCCC-----------CCTTCEEEECCTTSSSHHHHHHHHHHHHT
T ss_pred             CCCCCEEEEEeecCCHHHHHHHHcCC---cEEEEeccccc-----------cCCCeEEEEccccCHHHHHHHHHHhhccc
Confidence            34578999999999999999887754   47899999863           122344677999886532 2222221  0


Q ss_pred             cCCccEEEecCCCCC
Q 008149          517 LGSIDFVICQNSVPQ  531 (576)
Q Consensus       517 ~g~~DLVIGGpPCQ~  531 (576)
                      .+.||+|+.-.|++.
T Consensus        89 ~~~~D~Vlsd~~~~~  103 (191)
T 3dou_A           89 IEKVDDVVSDAMAKV  103 (191)
T ss_dssp             CSSEEEEEECCCCCC
T ss_pred             CCcceEEecCCCcCC
Confidence            148999998776543

>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*

Probab=94.84  E-value=0.035  Score=55.09  Aligned_cols=95  Identities=14%  Similarity=0.153  Sum_probs=58.0

Q ss_pred             chhhhccccccCCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhc-------CCCCCcccccc
Q 008149          429 LGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESS-------GQTGELVQIED  501 (576)
Q Consensus       429 v~~~lsvLK~~f~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~t-------n~~g~l~~~~D  501 (576)
                      +...+..|....+.+.+|||+-||.|++...+.+.+.  ..++++|+++...+..+......       +.....+..+|
T Consensus        21 ~~~~~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D   98 (313)
T 3bgv_A           21 IGEFLEKVRQKKKRDITVLDLGCGKGGDLLKWKKGRI--NKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITAD   98 (313)
T ss_dssp             HHHHHHHHHHTC--CCEEEEETCTTTTTHHHHHHTTC--SEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECC
T ss_pred             HHHHHHHhhhccCCCCEEEEECCCCcHHHHHHHhcCC--CEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEec
Confidence            3334444555445678999999999999998887654  35889999999887777655322       11112345677


Q ss_pred             ccccChhhHHHhhhccCCccEEEecC
Q 008149          502 IQALTTKKFESLIHKLGSIDFVICQN  527 (576)
Q Consensus       502 I~~lt~~~Ie~l~~~~g~~DLVIGGp  527 (576)
                      +.++....  .+....+.||+|+...
T Consensus        99 ~~~~~~~~--~~~~~~~~fD~V~~~~  122 (313)
T 3bgv_A           99 SSKELLID--KFRDPQMCFDICSCQF  122 (313)
T ss_dssp             TTTSCSTT--TCSSTTCCEEEEEEET
T ss_pred             ccccchhh--hcccCCCCEEEEEEec
Confidence            77654100  0000124689998654

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=94.77  E-value=0.06  Score=51.00  Aligned_cols=71  Identities=17%  Similarity=0.166  Sum_probs=51.4

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 008149          442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  521 (576)
Q Consensus       442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~D  521 (576)
                      .+.+|||+-||.|.+...|.+.|.+   |+++|+++......+......+. ...+..+|+.++..         .+.+|
T Consensus        41 ~~~~vLDlGcG~G~~~~~l~~~~~~---v~gvD~s~~~l~~a~~~~~~~~~-~v~~~~~d~~~~~~---------~~~fD  107 (252)
T 1wzn_A           41 EVRRVLDLACGTGIPTLELAERGYE---VVGLDLHEEMLRVARRKAKERNL-KIEFLQGDVLEIAF---------KNEFD  107 (252)
T ss_dssp             CCCEEEEETCTTCHHHHHHHHTTCE---EEEEESCHHHHHHHHHHHHHTTC-CCEEEESCGGGCCC---------CSCEE
T ss_pred             CCCEEEEeCCCCCHHHHHHHHCCCe---EEEEECCHHHHHHHHHHHHhcCC-ceEEEECChhhccc---------CCCcc
Confidence            4578999999999999999999874   78999999998888776543321 22345677766532         13577


Q ss_pred             EEEe
Q 008149          522 FVIC  525 (576)
Q Consensus       522 LVIG  525 (576)
                      +|+.
T Consensus       108 ~v~~  111 (252)
T 1wzn_A          108 AVTM  111 (252)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            7774

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*

Probab=94.70  E-value=0.051  Score=53.98  Aligned_cols=85  Identities=15%  Similarity=0.124  Sum_probs=57.9

Q ss_pred             hhhhccccccCCCCCcccccCCCCChhHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHhhhcCCC-CCccccccccccCh
Q 008149          430 GYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQT-GELVQIEDIQALTT  507 (576)
Q Consensus       430 ~~~lsvLK~~f~~~l~VLsLFSGiGG~slGL~~a-Gi~~k~vvavEid~~a~~t~k~~~~~tn~~-g~l~~~~DI~~lt~  507 (576)
                      ...+..|... +.+.+|||+.||.|++...+.+. |.+   |+++|+++......+.+....+.. ...+..+|+.++.-
T Consensus       106 ~~l~~~l~~~-~~~~~vLDiGcG~G~~~~~la~~~~~~---v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~  181 (312)
T 3vc1_A          106 EFLMDHLGQA-GPDDTLVDAGCGRGGSMVMAHRRFGSR---VEGVTLSAAQADFGNRRARELRIDDHVRSRVCNMLDTPF  181 (312)
T ss_dssp             HHHHTTSCCC-CTTCEEEEESCTTSHHHHHHHHHHCCE---EEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCC
T ss_pred             HHHHHHhccC-CCCCEEEEecCCCCHHHHHHHHHcCCE---EEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhcCCC
Confidence            3344444322 35688999999999999998876 753   789999999888777765543322 12356678876541


Q ss_pred             hhHHHhhhccCCccEEEec
Q 008149          508 KKFESLIHKLGSIDFVICQ  526 (576)
Q Consensus       508 ~~Ie~l~~~~g~~DLVIGG  526 (576)
                              ..+.||+|+..
T Consensus       182 --------~~~~fD~V~~~  192 (312)
T 3vc1_A          182 --------DKGAVTASWNN  192 (312)
T ss_dssp             --------CTTCEEEEEEE
T ss_pred             --------CCCCEeEEEEC
Confidence                    11578999853

>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}

Probab=94.67  E-value=0.039  Score=53.69  Aligned_cols=80  Identities=18%  Similarity=0.151  Sum_probs=56.0

Q ss_pred             CCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCC-CCCccccccccccChhhHHHhhhccC
Q 008149          440 FPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQ-TGELVQIEDIQALTTKKFESLIHKLG  518 (576)
Q Consensus       440 f~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~-~g~l~~~~DI~~lt~~~Ie~l~~~~g  518 (576)
                      -+.+.+|||+-||.|.+...|.+.|.+   |+++|+++......+......+. ....+..+|+.++..     +  ..+
T Consensus        66 ~~~~~~vLDiGcG~G~~~~~l~~~~~~---v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-----~--~~~  135 (285)
T 4htf_A           66 GPQKLRVLDAGGGEGQTAIKMAERGHQ---VILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVAS-----H--LET  135 (285)
T ss_dssp             CSSCCEEEEETCTTCHHHHHHHHTTCE---EEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGG-----G--CSS
T ss_pred             CCCCCEEEEeCCcchHHHHHHHHCCCE---EEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhh-----h--cCC
Confidence            345789999999999999999999874   68999999988887766543221 112245677766542     0  125


Q ss_pred             CccEEEecCCC
Q 008149          519 SIDFVICQNSV  529 (576)
Q Consensus       519 ~~DLVIGGpPC  529 (576)
                      .||+|+.....
T Consensus       136 ~fD~v~~~~~l  146 (285)
T 4htf_A          136 PVDLILFHAVL  146 (285)
T ss_dssp             CEEEEEEESCG
T ss_pred             CceEEEECchh
Confidence            79999975443

>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B

Probab=94.66  E-value=0.042  Score=42.36  Aligned_cols=37  Identities=22%  Similarity=0.310  Sum_probs=31.5

Q ss_pred             hHHHHHHHhcCC-CHHHHHHHHHHhCCCCChhhhhHhHhh
Q 008149           89 MEITLQLLEMGF-SENQVSLAIEKFGSKTPISELADKIFS  127 (576)
Q Consensus        89 ~~k~~~L~~MGF-seeEas~AI~r~G~da~i~eLvD~I~A  127 (576)
                      .+++..|+.||| +++.+..|+..+|-|  ++.-++.++.
T Consensus        13 ~~~l~~L~~MGF~~~~~~~~AL~~t~gn--~e~A~e~L~~   50 (52)
T 2jy5_A           13 QQQLEQLSAMGFLNREANLQALIATGGD--INAAIERLLG   50 (52)
T ss_dssp             HHHHHHHHHTTCCCHHHHHHHHHHHTTC--HHHHHHHHTT
T ss_pred             HHHHHHHHHcCCCCHHHHHHHHHHhCCC--HHHHHHHHHh
Confidence            358889999999 999999999999975  7777787765

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*

Probab=94.66  E-value=0.048  Score=50.01  Aligned_cols=81  Identities=20%  Similarity=0.079  Sum_probs=54.1

Q ss_pred             chhhhccccccCCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChh
Q 008149          429 LGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTK  508 (576)
Q Consensus       429 v~~~lsvLK~~f~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~  508 (576)
                      +...+..|... +.+.+|||+-||.|.+...+.+.|.+   ++++|+++......+.    .+.....+..+|+.++.. 
T Consensus        34 ~~~~~~~l~~~-~~~~~vLdiG~G~G~~~~~l~~~~~~---v~~~D~s~~~~~~a~~----~~~~~~~~~~~d~~~~~~-  104 (218)
T 3ou2_A           34 APAALERLRAG-NIRGDVLELASGTGYWTRHLSGLADR---VTALDGSAEMIAEAGR----HGLDNVEFRQQDLFDWTP-  104 (218)
T ss_dssp             HHHHHHHHTTT-TSCSEEEEESCTTSHHHHHHHHHSSE---EEEEESCHHHHHHHGG----GCCTTEEEEECCTTSCCC-
T ss_pred             HHHHHHHHhcC-CCCCeEEEECCCCCHHHHHHHhcCCe---EEEEeCCHHHHHHHHh----cCCCCeEEEecccccCCC-
Confidence            33444444443 34569999999999999999998864   6789999998777654    111223345677765511 


Q ss_pred             hHHHhhhccCCccEEEec
Q 008149          509 KFESLIHKLGSIDFVICQ  526 (576)
Q Consensus       509 ~Ie~l~~~~g~~DLVIGG  526 (576)
                              .+.+|+|+..
T Consensus       105 --------~~~~D~v~~~  114 (218)
T 3ou2_A          105 --------DRQWDAVFFA  114 (218)
T ss_dssp             --------SSCEEEEEEE
T ss_pred             --------CCceeEEEEe
Confidence                    2468888864

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13

Probab=94.64  E-value=0.059  Score=52.59  Aligned_cols=79  Identities=18%  Similarity=0.183  Sum_probs=54.8

Q ss_pred             CCCcccccCCCCChhHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHhhhcCC-CCCccccccccccChhhHHHhhhccCC
Q 008149          442 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQ-TGELVQIEDIQALTTKKFESLIHKLGS  519 (576)
Q Consensus       442 ~~l~VLsLFSGiGG~slGL~~a-Gi~~k~vvavEid~~a~~t~k~~~~~tn~-~g~l~~~~DI~~lt~~~Ie~l~~~~g~  519 (576)
                      .+.+|||+.||.|.+.+.+.+. |-. ..|+++|+++.+.+..+.+....+. ....+..+|+.+.-.         .+.
T Consensus       112 ~~~~VLDiG~G~G~~~~~la~~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~---------~~~  181 (277)
T 1o54_A          112 EGDRIIDTGVGSGAMCAVLARAVGSS-GKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGFD---------EKD  181 (277)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHTTTT-CEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGCCS---------CCS
T ss_pred             CCCEEEEECCcCCHHHHHHHHHhCCC-cEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHccc---------CCc
Confidence            4678999999999999988876 421 2478999999998888876644321 111234566654311         146


Q ss_pred             ccEEEecCCCC
Q 008149          520 IDFVICQNSVP  530 (576)
Q Consensus       520 ~DLVIGGpPCQ  530 (576)
                      +|+|+..+|+.
T Consensus       182 ~D~V~~~~~~~  192 (277)
T 1o54_A          182 VDALFLDVPDP  192 (277)
T ss_dssp             EEEEEECCSCG
T ss_pred             cCEEEECCcCH
Confidence            99999988765

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=94.60  E-value=0.015  Score=63.55  Aligned_cols=77  Identities=16%  Similarity=0.192  Sum_probs=51.6

Q ss_pred             CCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 008149          441 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI  520 (576)
Q Consensus       441 ~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~  520 (576)
                      ..+++|||+=||.|-++..|.++|..   |.+||.++.+..+-+.+-...+.....+..+|+.     ++... ..-+.|
T Consensus        65 ~~~~~vLDvGCG~G~~~~~la~~ga~---V~giD~~~~~i~~a~~~a~~~~~~~~~~~~~~~~-----~~~~~-~~~~~f  135 (569)
T 4azs_A           65 GRPLNVLDLGCAQGFFSLSLASKGAT---IVGIDFQQENINVCRALAEENPDFAAEFRVGRIE-----EVIAA-LEEGEF  135 (569)
T ss_dssp             TSCCEEEEETCTTSHHHHHHHHTTCE---EEEEESCHHHHHHHHHHHHTSTTSEEEEEECCHH-----HHHHH-CCTTSC
T ss_pred             CCCCeEEEECCCCcHHHHHHHhCCCE---EEEECCCHHHHHHHHHHHHhcCCCceEEEECCHH-----HHhhh-ccCCCc
Confidence            35689999999999999999999984   7899999999888776543322111112233333     33110 112579


Q ss_pred             cEEEec
Q 008149          521 DFVICQ  526 (576)
Q Consensus       521 DLVIGG  526 (576)
                      |+|++-
T Consensus       136 D~v~~~  141 (569)
T 4azs_A          136 DLAIGL  141 (569)
T ss_dssp             SEEEEE
T ss_pred             cEEEEC
Confidence            999863

>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=94.59  E-value=0.038  Score=46.77  Aligned_cols=39  Identities=23%  Similarity=0.289  Sum_probs=34.3

Q ss_pred             hHHHHHHHhcCCCHHHHHHHHHHhCCCCChhhhhHhHhhcc
Q 008149           89 MEITLQLLEMGFSENQVSLAIEKFGSKTPISELADKIFSGQ  129 (576)
Q Consensus        89 ~~k~~~L~~MGFseeEas~AI~r~G~da~i~eLvD~I~Aaq  129 (576)
                      .+++..|+.|||++++|..|+..|+.  .++.=+++|+..+
T Consensus        30 e~~i~~L~~MGF~~~~a~~AL~~t~~--nve~A~ewL~~~~   68 (83)
T 2dai_A           30 EAALRQLTEMGFPENRATKALQLNHM--SVPQAMEWLIEHA   68 (83)
T ss_dssp             HHHHHHHHHHTCCHHHHHHHHHHTTS--CHHHHHHHHHHGG
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHhCC--CHHHHHHHHHHCC
Confidence            35788999999999999999999954  6888899999876

>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}

Probab=94.57  E-value=0.027  Score=55.88  Aligned_cols=81  Identities=17%  Similarity=0.181  Sum_probs=50.0

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCH-------HHHHHHHHHhhhcCCCC-CccccccccccChhhHHHh
Q 008149          442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSE-------TNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESL  513 (576)
Q Consensus       442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~-------~a~~t~k~~~~~tn~~g-~l~~~~DI~~lt~~~Ie~l  513 (576)
                      .+.+|||++||.|.+++.|.+.|.+   |+++|+++       .+.+..+.+....+... ..++.+|+.++.    ..+
T Consensus        83 ~~~~VLDlgcG~G~~a~~lA~~g~~---V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~d~~~~l----~~~  155 (258)
T 2r6z_A           83 AHPTVWDATAGLGRDSFVLASLGLT---VTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNAAEQM----PAL  155 (258)
T ss_dssp             GCCCEEETTCTTCHHHHHHHHTTCC---EEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCHHHHH----HHH
T ss_pred             CcCeEEEeeCccCHHHHHHHHhCCE---EEEEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEECCHHHHH----Hhh
Confidence            3578999999999999999888853   78999999       66655544322111001 123445554431    111


Q ss_pred             hhccCCccEEEecCCC
Q 008149          514 IHKLGSIDFVICQNSV  529 (576)
Q Consensus       514 ~~~~g~~DLVIGGpPC  529 (576)
                      ....+.||+|+--||=
T Consensus       156 ~~~~~~fD~V~~dP~~  171 (258)
T 2r6z_A          156 VKTQGKPDIVYLDPMY  171 (258)
T ss_dssp             HHHHCCCSEEEECCCC
T ss_pred             hccCCCccEEEECCCC
Confidence            1101479999987653

>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20

Probab=94.56  E-value=0.059  Score=49.53  Aligned_cols=71  Identities=14%  Similarity=0.113  Sum_probs=51.3

Q ss_pred             CCcccccCCCCChhHHHHHHc--CCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 008149          443 GLTMLSVFSGIGGAEVTLHRL--GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI  520 (576)
Q Consensus       443 ~l~VLsLFSGiGG~slGL~~a--Gi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~  520 (576)
                      +.+|||+-||.|.+...+...  +.   .++++|+++.+....+.+....+.....+..+|+.++..         .+.+
T Consensus        66 ~~~vLDiG~G~G~~~~~l~~~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~---------~~~~  133 (207)
T 1jsx_A           66 GERFIDVGTGPGLPGIPLSIVRPEA---HFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFPS---------EPPF  133 (207)
T ss_dssp             SSEEEEETCTTTTTHHHHHHHCTTS---EEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSCC---------CSCE
T ss_pred             CCeEEEECCCCCHHHHHHHHHCCCC---EEEEEeCCHHHHHHHHHHHHHcCCCCeEEEecchhhCCc---------cCCc
Confidence            568999999999999888875  43   478999999998888876654432223345677765542         1479


Q ss_pred             cEEEe
Q 008149          521 DFVIC  525 (576)
Q Consensus       521 DLVIG  525 (576)
                      |+|+.
T Consensus       134 D~i~~  138 (207)
T 1jsx_A          134 DGVIS  138 (207)
T ss_dssp             EEEEC
T ss_pred             CEEEE
Confidence            99984

>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}

Probab=94.55  E-value=0.042  Score=51.74  Aligned_cols=77  Identities=17%  Similarity=0.031  Sum_probs=53.7

Q ss_pred             CcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCC-CCccccccccccChhhHHHhhhccCCccE
Q 008149          444 LTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQT-GELVQIEDIQALTTKKFESLIHKLGSIDF  522 (576)
Q Consensus       444 l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~-g~l~~~~DI~~lt~~~Ie~l~~~~g~~DL  522 (576)
                      .+|||+-||.|.+...|.+.|..   |+++|+++.+....+......+.. ...+..+|+.++..+         +.||+
T Consensus        68 ~~vLDiGcG~G~~~~~l~~~~~~---v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~---------~~fD~  135 (235)
T 3lcc_A           68 GRALVPGCGGGHDVVAMASPERF---VVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTWRPT---------ELFDL  135 (235)
T ss_dssp             EEEEEETCTTCHHHHHHCBTTEE---EEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTCCCS---------SCEEE
T ss_pred             CCEEEeCCCCCHHHHHHHhCCCe---EEEEECCHHHHHHHHHHhhccCCCcceEEEECchhcCCCC---------CCeeE
Confidence            49999999999999999887753   789999999988887765321111 122456777765421         36899


Q ss_pred             EEecCCCCCc
Q 008149          523 VICQNSVPQI  532 (576)
Q Consensus       523 VIGGpPCQ~F  532 (576)
                      |+.......+
T Consensus       136 v~~~~~l~~~  145 (235)
T 3lcc_A          136 IFDYVFFCAI  145 (235)
T ss_dssp             EEEESSTTTS
T ss_pred             EEEChhhhcC
Confidence            9876544433

>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A

Probab=94.55  E-value=0.026  Score=54.18  Aligned_cols=46  Identities=20%  Similarity=0.191  Sum_probs=35.5

Q ss_pred             CCCcccccCCCCChhHHHHHHcC-CceeeEEEeeCCHHHHHHHHHHh
Q 008149          442 GGLTMLSVFSGIGGAEVTLHRLG-IKLKGVISIETSETNRRILKRWW  487 (576)
Q Consensus       442 ~~l~VLsLFSGiGG~slGL~~aG-i~~k~vvavEid~~a~~t~k~~~  487 (576)
                      .+.+|||+.||.|.+.+.+.+.. ..-..|+++|+|+.+.+..+.+.
T Consensus        51 ~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~   97 (250)
T 1o9g_A           51 GPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNL   97 (250)
T ss_dssp             SCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHH
T ss_pred             CCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHH
Confidence            45789999999999998887650 11235789999999988777544

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}

Probab=94.45  E-value=0.084  Score=50.82  Aligned_cols=83  Identities=20%  Similarity=0.228  Sum_probs=57.7

Q ss_pred             CCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCC
Q 008149          440 FPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGS  519 (576)
Q Consensus       440 f~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~  519 (576)
                      ++.+.+|||+-||.|.+...+.+.+-. ..++++|+++......+......+.....+...|+.++...        .+.
T Consensus        35 ~~~~~~vLDiG~G~G~~~~~l~~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~--------~~~  105 (276)
T 3mgg_A           35 YPPGAKVLEAGCGIGAQTVILAKNNPD-AEITSIDISPESLEKARENTEKNGIKNVKFLQANIFSLPFE--------DSS  105 (276)
T ss_dssp             CCTTCEEEETTCTTSHHHHHHHHHCTT-SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGCCSC--------TTC
T ss_pred             CCCCCeEEEecCCCCHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEcccccCCCC--------CCC
Confidence            356789999999999999999887421 24789999999888777765443322333456777765421        257


Q ss_pred             ccEEEecCCCCC
Q 008149          520 IDFVICQNSVPQ  531 (576)
Q Consensus       520 ~DLVIGGpPCQ~  531 (576)
                      ||+|+.....+.
T Consensus       106 fD~v~~~~~l~~  117 (276)
T 3mgg_A          106 FDHIFVCFVLEH  117 (276)
T ss_dssp             EEEEEEESCGGG
T ss_pred             eeEEEEechhhh
Confidence            999997654443

>2dkl_A Trinucleotide repeat containing 6C protein; TNRC6C, KIAA1582 protein, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1

Probab=94.44  E-value=0.036  Score=47.13  Aligned_cols=38  Identities=13%  Similarity=0.075  Sum_probs=32.7

Q ss_pred             hhhhHHHhcCCCChHHHHHHHHHhCCCCcHHHHHHHHHHh
Q 008149           17 IEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAA   56 (576)
Q Consensus        17 s~~r~~li~MGFs~e~V~kAIqe~Ge~~~~~~Ile~Ll~~   56 (576)
                      .+...+|+.|||+++.+.+|+.. +..+ ++.=+++|+..
T Consensus        22 ~~~I~qL~~MGF~~~~a~~AL~~-~n~n-~e~A~ewL~~h   59 (85)
T 2dkl_A           22 SRLIKQLTDMGFPREPAEEALKS-NNMN-LDQAMSALLEK   59 (85)
T ss_dssp             HHHHHHHHHHTCCHHHHHHHHHH-TTSC-HHHHHHHHHTT
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHH-cCCC-HHHHHHHHHHC
Confidence            66889999999999999999955 5556 89999999963

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=94.44  E-value=0.089  Score=49.58  Aligned_cols=76  Identities=12%  Similarity=0.030  Sum_probs=53.1

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCC-CCCccccccccccChhhHHHhhhccCCc
Q 008149          442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQ-TGELVQIEDIQALTTKKFESLIHKLGSI  520 (576)
Q Consensus       442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~-~g~l~~~~DI~~lt~~~Ie~l~~~~g~~  520 (576)
                      .+.+|||+.||.|.+...+.+.+.   .++++|+++...+..+.+....+. ....+..+|+.+...        ..+.+
T Consensus        91 ~~~~vldiG~G~G~~~~~l~~~~~---~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~--------~~~~~  159 (248)
T 2yvl_A           91 KEKRVLEFGTGSGALLAVLSEVAG---EVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAEV--------PEGIF  159 (248)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHSS---EEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTSCC--------CTTCB
T ss_pred             CCCEEEEeCCCccHHHHHHHHhCC---EEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhccc--------CCCcc
Confidence            467899999999999998888754   478999999998888776644321 112234566655330        11479


Q ss_pred             cEEEecCC
Q 008149          521 DFVICQNS  528 (576)
Q Consensus       521 DLVIGGpP  528 (576)
                      |+|+..+|
T Consensus       160 D~v~~~~~  167 (248)
T 2yvl_A          160 HAAFVDVR  167 (248)
T ss_dssp             SEEEECSS
T ss_pred             cEEEECCc
Confidence            99998666

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*

Probab=94.43  E-value=0.077  Score=49.53  Aligned_cols=83  Identities=18%  Similarity=0.182  Sum_probs=57.6

Q ss_pred             CCCcccccCCCCChhHHHHHHc---CCceeeEEEeeCCHHHHHHHHHHhhhcCCCC-CccccccccccChhhHHHhhhcc
Q 008149          442 GGLTMLSVFSGIGGAEVTLHRL---GIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKL  517 (576)
Q Consensus       442 ~~l~VLsLFSGiGG~slGL~~a---Gi~~k~vvavEid~~a~~t~k~~~~~tn~~g-~l~~~~DI~~lt~~~Ie~l~~~~  517 (576)
                      .+.+|||+-||.|+....+.++   |.   .|+++|+++......+.++...+... ..++.+|+.+.    +..+....
T Consensus        58 ~~~~vLdiG~G~G~~~~~la~~~~~~~---~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~----~~~~~~~~  130 (223)
T 3duw_A           58 GARNILEIGTLGGYSTIWLARGLSSGG---RVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDS----LQQIENEK  130 (223)
T ss_dssp             TCSEEEEECCTTSHHHHHHHTTCCSSC---EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHH----HHHHHHTT
T ss_pred             CCCEEEEecCCccHHHHHHHHhCCCCC---EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHH----HHHHHhcC
Confidence            3578999999999999998876   54   47899999999888888776543322 22455666542    22222211


Q ss_pred             -CCccEEEecCCCCC
Q 008149          518 -GSIDFVICQNSVPQ  531 (576)
Q Consensus       518 -g~~DLVIGGpPCQ~  531 (576)
                       +.||+|+-..+|..
T Consensus       131 ~~~fD~v~~d~~~~~  145 (223)
T 3duw_A          131 YEPFDFIFIDADKQN  145 (223)
T ss_dssp             CCCCSEEEECSCGGG
T ss_pred             CCCcCEEEEcCCcHH
Confidence             56999998877664

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*

Probab=94.42  E-value=0.07  Score=50.71  Aligned_cols=79  Identities=13%  Similarity=0.204  Sum_probs=56.2

Q ss_pred             CCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 008149          441 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI  520 (576)
Q Consensus       441 ~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~  520 (576)
                      +.+.+|||+-||.|.+...+...|.   .++++|+++......+......+.....+..+|+.++..        .-+.|
T Consensus        20 ~~~~~vLDiGcG~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~--------~~~~f   88 (239)
T 1xxl_A           20 RAEHRVLDIGAGAGHTALAFSPYVQ---ECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPF--------PDDSF   88 (239)
T ss_dssp             CTTCEEEEESCTTSHHHHHHGGGSS---EEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCS--------CTTCE
T ss_pred             CCCCEEEEEccCcCHHHHHHHHhCC---EEEEEECCHHHHHHHHHHHHHcCCCCeEEEecccccCCC--------CCCcE
Confidence            3467899999999999999988874   478999999988877766544332223345677766541        11479


Q ss_pred             cEEEecCCCC
Q 008149          521 DFVICQNSVP  530 (576)
Q Consensus       521 DLVIGGpPCQ  530 (576)
                      |+|+......
T Consensus        89 D~v~~~~~l~   98 (239)
T 1xxl_A           89 DIITCRYAAH   98 (239)
T ss_dssp             EEEEEESCGG
T ss_pred             EEEEECCchh
Confidence            9999765443

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=94.36  E-value=0.039  Score=55.28  Aligned_cols=45  Identities=20%  Similarity=0.350  Sum_probs=38.3

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhh
Q 008149          442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWES  489 (576)
Q Consensus       442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~  489 (576)
                      .+-+|||+|||.|...+++.++|.+   ++++|+++.+..+.+.....
T Consensus       235 ~~~~vlD~f~GsGt~~~~a~~~g~~---~~g~e~~~~~~~~a~~r~~~  279 (297)
T 2zig_A          235 VGDVVLDPFAGTGTTLIAAARWGRR---ALGVELVPRYAQLAKERFAR  279 (297)
T ss_dssp             TTCEEEETTCTTTHHHHHHHHTTCE---EEEEESCHHHHHHHHHHHHH
T ss_pred             CCCEEEECCCCCCHHHHHHHHcCCe---EEEEeCCHHHHHHHHHHHHH
Confidence            4567999999999999999999964   78999999998887766543

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}

Probab=94.34  E-value=0.088  Score=49.91  Aligned_cols=80  Identities=21%  Similarity=0.172  Sum_probs=55.5

Q ss_pred             CCCcccccCCCCChhHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHhhhc-CCCCCccccccccccChhhHHHhhhccCC
Q 008149          442 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESS-GQTGELVQIEDIQALTTKKFESLIHKLGS  519 (576)
Q Consensus       442 ~~l~VLsLFSGiGG~slGL~~a-Gi~~k~vvavEid~~a~~t~k~~~~~t-n~~g~l~~~~DI~~lt~~~Ie~l~~~~g~  519 (576)
                      .+.+|||+.||.|.+...+.+. |-. ..++++|+++...+..+.+.... +.....+..+|+.+..   +.     .+.
T Consensus        96 ~~~~vLdiG~G~G~~~~~l~~~~~~~-~~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~---~~-----~~~  166 (258)
T 2pwy_A           96 PGMRVLEAGTGSGGLTLFLARAVGEK-GLVESYEARPHHLAQAERNVRAFWQVENVRFHLGKLEEAE---LE-----EAA  166 (258)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHHCTT-SEEEEEESCHHHHHHHHHHHHHHCCCCCEEEEESCGGGCC---CC-----TTC
T ss_pred             CCCEEEEECCCcCHHHHHHHHHhCCC-CEEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEECchhhcC---CC-----CCC
Confidence            4678999999999999998887 411 24789999999988888766443 2122234567776552   11     147


Q ss_pred             ccEEEecCCCC
Q 008149          520 IDFVICQNSVP  530 (576)
Q Consensus       520 ~DLVIGGpPCQ  530 (576)
                      +|+|+..+|+.
T Consensus       167 ~D~v~~~~~~~  177 (258)
T 2pwy_A          167 YDGVALDLMEP  177 (258)
T ss_dssp             EEEEEEESSCG
T ss_pred             cCEEEECCcCH
Confidence            99999877654

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13

Probab=94.33  E-value=0.086  Score=51.56  Aligned_cols=76  Identities=17%  Similarity=0.081  Sum_probs=52.9

Q ss_pred             CCCCcccccCCCCChhHHHHHHc---CCceeeEEEeeCCHHHHHHHHHHhhhc-CCCCCccccccccccChhhHHHhhhc
Q 008149          441 PGGLTMLSVFSGIGGAEVTLHRL---GIKLKGVISIETSETNRRILKRWWESS-GQTGELVQIEDIQALTTKKFESLIHK  516 (576)
Q Consensus       441 ~~~l~VLsLFSGiGG~slGL~~a---Gi~~k~vvavEid~~a~~t~k~~~~~t-n~~g~l~~~~DI~~lt~~~Ie~l~~~  516 (576)
                      ..+.+|||+.||.|++...+.+.   +.   .|+++|+++...+..+.+.... +.....+..+|+.+.-.         
T Consensus       109 ~~~~~VLD~G~G~G~~~~~la~~~~~~~---~v~~vD~s~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~---------  176 (275)
T 1yb2_A          109 RPGMDILEVGVGSGNMSSYILYALNGKG---TLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFIS---------  176 (275)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHHTTSS---EEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCCC---------
T ss_pred             CCcCEEEEecCCCCHHHHHHHHHcCCCC---EEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECchhccCc---------
Confidence            34678999999999999988876   44   4789999999988887766433 21122244566654211         


Q ss_pred             cCCccEEEecCC
Q 008149          517 LGSIDFVICQNS  528 (576)
Q Consensus       517 ~g~~DLVIGGpP  528 (576)
                      .+.||+|+...|
T Consensus       177 ~~~fD~Vi~~~~  188 (275)
T 1yb2_A          177 DQMYDAVIADIP  188 (275)
T ss_dssp             SCCEEEEEECCS
T ss_pred             CCCccEEEEcCc
Confidence            146999998655

>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}

Probab=94.29  E-value=0.12  Score=51.06  Aligned_cols=44  Identities=16%  Similarity=0.141  Sum_probs=37.9

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeC-CHHHHHHHHHHh
Q 008149          442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIET-SETNRRILKRWW  487 (576)
Q Consensus       442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEi-d~~a~~t~k~~~  487 (576)
                      .+.+||||.||.|.+++.+.+.|.  ..|+++|+ ++.+....+.+.
T Consensus        79 ~~~~vLDlG~G~G~~~~~~a~~~~--~~v~~~D~s~~~~~~~a~~n~  123 (281)
T 3bzb_A           79 AGKTVCELGAGAGLVSIVAFLAGA--DQVVATDYPDPEILNSLESNI  123 (281)
T ss_dssp             TTCEEEETTCTTSHHHHHHHHTTC--SEEEEEECSCHHHHHHHHHHH
T ss_pred             CCCeEEEecccccHHHHHHHHcCC--CEEEEEeCCCHHHHHHHHHHH
Confidence            456899999999999999999885  35899999 899988888765

>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45

Probab=94.28  E-value=0.053  Score=57.33  Aligned_cols=83  Identities=14%  Similarity=0.102  Sum_probs=55.5

Q ss_pred             CCCcccccCCCCChhHHHHHHcC------------CceeeEEEeeCCHHHHHHHHHHhhhcCCC--CCccccccccccCh
Q 008149          442 GGLTMLSVFSGIGGAEVTLHRLG------------IKLKGVISIETSETNRRILKRWWESSGQT--GELVQIEDIQALTT  507 (576)
Q Consensus       442 ~~l~VLsLFSGiGG~slGL~~aG------------i~~k~vvavEid~~a~~t~k~~~~~tn~~--g~l~~~~DI~~lt~  507 (576)
                      .+.+|+|..||.||+.+.+.+.-            +....++++|+++.+.++.+.+...++..  ...+..+|......
T Consensus       171 ~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~g~~~~~~~i~~gD~l~~~~  250 (445)
T 2okc_A          171 MGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRSPIVCEDSLEKEP  250 (445)
T ss_dssp             TTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSCCSEEECCTTTSCC
T ss_pred             CCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHhCCCcCCCCEeeCCCCCCcc
Confidence            35789999999999988775420            01134789999999988877654333221  22345566543321


Q ss_pred             hhHHHhhhccCCccEEEecCCCCCcc
Q 008149          508 KKFESLIHKLGSIDFVICQNSVPQIP  533 (576)
Q Consensus       508 ~~Ie~l~~~~g~~DLVIGGpPCQ~FS  533 (576)
                               .+.||+|++-||.....
T Consensus       251 ---------~~~fD~Iv~NPPf~~~~  267 (445)
T 2okc_A          251 ---------STLVDVILANPPFGTRP  267 (445)
T ss_dssp             ---------SSCEEEEEECCCSSCCC
T ss_pred             ---------cCCcCEEEECCCCCCcc
Confidence                     24799999999987654

>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36

Probab=94.27  E-value=0.061  Score=50.34  Aligned_cols=75  Identities=20%  Similarity=0.126  Sum_probs=54.4

Q ss_pred             CCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhc------------CCCCCccccccccccChh
Q 008149          441 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESS------------GQTGELVQIEDIQALTTK  508 (576)
Q Consensus       441 ~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~t------------n~~g~l~~~~DI~~lt~~  508 (576)
                      +.+.+|||+=||.|....-|.+.|.+   |+++|+++.+.+..+......            ......+..+|+.++...
T Consensus        21 ~~~~~vLD~GCG~G~~~~~la~~g~~---V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~~   97 (203)
T 1pjz_A           21 VPGARVLVPLCGKSQDMSWLSGQGYH---VVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTAR   97 (203)
T ss_dssp             CTTCEEEETTTCCSHHHHHHHHHCCE---EEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHH
T ss_pred             CCCCEEEEeCCCCcHhHHHHHHCCCe---EEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECccccCCcc
Confidence            45689999999999999999999974   789999999988776542210            012233567899888743


Q ss_pred             hHHHhhhccCCccEEEe
Q 008149          509 KFESLIHKLGSIDFVIC  525 (576)
Q Consensus       509 ~Ie~l~~~~g~~DLVIG  525 (576)
                      ..       +.||+|+.
T Consensus        98 ~~-------~~fD~v~~  107 (203)
T 1pjz_A           98 DI-------GHCAAFYD  107 (203)
T ss_dssp             HH-------HSEEEEEE
T ss_pred             cC-------CCEEEEEE
Confidence            21       36899985

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=94.22  E-value=0.065  Score=49.04  Aligned_cols=69  Identities=16%  Similarity=0.100  Sum_probs=51.9

Q ss_pred             CCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCccE
Q 008149          443 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDF  522 (576)
Q Consensus       443 ~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~DL  522 (576)
                      +.+|||+-||.|.+...|.+.|.+   ++++|+++......+...     +...+..+|+.++..        .-+.||+
T Consensus        42 ~~~vLDiGcG~G~~~~~l~~~~~~---v~gvD~s~~~~~~a~~~~-----~~~~~~~~d~~~~~~--------~~~~fD~  105 (203)
T 3h2b_A           42 DGVILDVGSGTGRWTGHLASLGHQ---IEGLEPATRLVELARQTH-----PSVTFHHGTITDLSD--------SPKRWAG  105 (203)
T ss_dssp             CSCEEEETCTTCHHHHHHHHTTCC---EEEECCCHHHHHHHHHHC-----TTSEEECCCGGGGGG--------SCCCEEE
T ss_pred             CCeEEEecCCCCHHHHHHHhcCCe---EEEEeCCHHHHHHHHHhC-----CCCeEEeCccccccc--------CCCCeEE
Confidence            678999999999999999999874   688999999887776542     223356677776531        1257999


Q ss_pred             EEecC
Q 008149          523 VICQN  527 (576)
Q Consensus       523 VIGGp  527 (576)
                      |+...
T Consensus       106 v~~~~  110 (203)
T 3h2b_A          106 LLAWY  110 (203)
T ss_dssp             EEEES
T ss_pred             EEehh
Confidence            99754

>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*

Probab=94.20  E-value=0.099  Score=51.33  Aligned_cols=54  Identities=22%  Similarity=0.127  Sum_probs=43.9

Q ss_pred             ccccCCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhc
Q 008149          436 LKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESS  490 (576)
Q Consensus       436 LK~~f~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~t  490 (576)
                      +.++.+.+-+|+|+=||.|-+.+.+.+.|-. ..|+|+|+++.+...-+.+-..+
T Consensus         9 l~~~v~~g~~VlDIGtGsG~l~i~la~~~~~-~~V~avDi~~~al~~A~~N~~~~   62 (225)
T 3kr9_A            9 VASFVSQGAILLDVGSDHAYLPIELVERGQI-KSAIAGEVVEGPYQSAVKNVEAH   62 (225)
T ss_dssp             HHTTSCTTEEEEEETCSTTHHHHHHHHTTSE-EEEEEEESSHHHHHHHHHHHHHT
T ss_pred             HHHhCCCCCEEEEeCCCcHHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHHHHc
Confidence            3445566789999999999999999998843 45899999999998888776544

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}

Probab=94.18  E-value=0.068  Score=50.03  Aligned_cols=78  Identities=15%  Similarity=0.105  Sum_probs=56.8

Q ss_pred             CCCCcccccCCCCChhHHHHHHc--CCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccC
Q 008149          441 PGGLTMLSVFSGIGGAEVTLHRL--GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLG  518 (576)
Q Consensus       441 ~~~l~VLsLFSGiGG~slGL~~a--Gi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g  518 (576)
                      +.+.+|||+-||.|.+...+.+.  |.   .++++|+++......+.......  ...+..+|+.++...         +
T Consensus        43 ~~~~~vLDiG~G~G~~~~~l~~~~~~~---~v~~vD~s~~~~~~a~~~~~~~~--~~~~~~~d~~~~~~~---------~  108 (234)
T 3dtn_A           43 TENPDILDLGAGTGLLSAFLMEKYPEA---TFTLVDMSEKMLEIAKNRFRGNL--KVKYIEADYSKYDFE---------E  108 (234)
T ss_dssp             CSSCEEEEETCTTSHHHHHHHHHCTTC---EEEEEESCHHHHHHHHHHTCSCT--TEEEEESCTTTCCCC---------S
T ss_pred             CCCCeEEEecCCCCHHHHHHHHhCCCC---eEEEEECCHHHHHHHHHhhccCC--CEEEEeCchhccCCC---------C
Confidence            45689999999999999999887  54   47899999998888776543221  233456777766531         4


Q ss_pred             CccEEEecCCCCCc
Q 008149          519 SIDFVICQNSVPQI  532 (576)
Q Consensus       519 ~~DLVIGGpPCQ~F  532 (576)
                      .+|+|+......-+
T Consensus       109 ~fD~v~~~~~l~~~  122 (234)
T 3dtn_A          109 KYDMVVSALSIHHL  122 (234)
T ss_dssp             CEEEEEEESCGGGS
T ss_pred             CceEEEEeCccccC
Confidence            79999987654444

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A

Probab=94.18  E-value=0.086  Score=49.89  Aligned_cols=77  Identities=16%  Similarity=0.107  Sum_probs=54.4

Q ss_pred             CCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCC
Q 008149          440 FPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGS  519 (576)
Q Consensus       440 f~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~  519 (576)
                      .+.+.+|||+-||.|.+...+.+.|.   .|+++|+++......+... ........+..+|+.++..        .-+.
T Consensus        37 ~~~~~~vLDiG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~-~~~~~~~~~~~~d~~~~~~--------~~~~  104 (263)
T 2yqz_A           37 KGEEPVFLELGVGTGRIALPLIARGY---RYIALDADAAMLEVFRQKI-AGVDRKVQVVQADARAIPL--------PDES  104 (263)
T ss_dssp             SSSCCEEEEETCTTSTTHHHHHTTTC---EEEEEESCHHHHHHHHHHT-TTSCTTEEEEESCTTSCCS--------CTTC
T ss_pred             CCCCCEEEEeCCcCCHHHHHHHHCCC---EEEEEECCHHHHHHHHHHh-hccCCceEEEEcccccCCC--------CCCC
Confidence            34568999999999999999988875   3789999999888777654 1112223345677766541        1146


Q ss_pred             ccEEEecCC
Q 008149          520 IDFVICQNS  528 (576)
Q Consensus       520 ~DLVIGGpP  528 (576)
                      ||+|+....
T Consensus       105 fD~v~~~~~  113 (263)
T 2yqz_A          105 VHGVIVVHL  113 (263)
T ss_dssp             EEEEEEESC
T ss_pred             eeEEEECCc
Confidence            999997654

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=94.15  E-value=0.063  Score=60.62  Aligned_cols=82  Identities=13%  Similarity=0.145  Sum_probs=55.3

Q ss_pred             CCCcccccCCCCChhHHHHHHcC------Cc-----------------------------------eeeEEEeeCCHHHH
Q 008149          442 GGLTMLSVFSGIGGAEVTLHRLG------IK-----------------------------------LKGVISIETSETNR  480 (576)
Q Consensus       442 ~~l~VLsLFSGiGG~slGL~~aG------i~-----------------------------------~k~vvavEid~~a~  480 (576)
                      .+.+++|.|||.|++.+.+...+      +.                                   -..++++|+|+.+.
T Consensus       190 ~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~~~~~i~G~Did~~av  269 (703)
T 3v97_A          190 PGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEYSSHFYGSDSDARVI  269 (703)
T ss_dssp             TTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEESCHHHH
T ss_pred             CCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccccCCccEEEEECCHHHH
Confidence            45789999999999976554432      10                                   02488999999999


Q ss_pred             HHHHHHhhhcCCCC-CccccccccccChhhHHHhhhccCCccEEEecCCC
Q 008149          481 RILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGSIDFVICQNSV  529 (576)
Q Consensus       481 ~t~k~~~~~tn~~g-~l~~~~DI~~lt~~~Ie~l~~~~g~~DLVIGGpPC  529 (576)
                      ++-+.+....+... ..+..+|+.++....      ..+.+|+|+.-||=
T Consensus       270 ~~A~~N~~~agv~~~i~~~~~D~~~~~~~~------~~~~~d~Iv~NPPY  313 (703)
T 3v97_A          270 QRARTNARLAGIGELITFEVKDVAQLTNPL------PKGPYGTVLSNPPY  313 (703)
T ss_dssp             HHHHHHHHHTTCGGGEEEEECCGGGCCCSC------TTCCCCEEEECCCC
T ss_pred             HHHHHHHHHcCCCCceEEEECChhhCcccc------ccCCCCEEEeCCCc
Confidence            98888776553322 124567777664211      11379999999884

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}

Probab=94.11  E-value=0.081  Score=47.01  Aligned_cols=82  Identities=13%  Similarity=0.136  Sum_probs=52.6

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 008149          442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  521 (576)
Q Consensus       442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~D  521 (576)
                      .+.+|||+.||.|.+...+.+.. +-..|+++|+++...+..+.+....+....+...+|..+    .+.   ...+.+|
T Consensus        25 ~~~~vldiG~G~G~~~~~l~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~----~~~---~~~~~~D   96 (178)
T 3hm2_A           25 PHETLWDIGGGSGSIAIEWLRST-PQTTAVCFEISEERRERILSNAINLGVSDRIAVQQGAPR----AFD---DVPDNPD   96 (178)
T ss_dssp             TTEEEEEESTTTTHHHHHHHTTS-SSEEEEEECSCHHHHHHHHHHHHTTTCTTSEEEECCTTG----GGG---GCCSCCS
T ss_pred             CCCeEEEeCCCCCHHHHHHHHHC-CCCeEEEEeCCHHHHHHHHHHHHHhCCCCCEEEecchHh----hhh---ccCCCCC
Confidence            45789999999999999887762 113478999999988888776544332212233445432    111   1116799


Q ss_pred             EEEecCCCCC
Q 008149          522 FVICQNSVPQ  531 (576)
Q Consensus       522 LVIGGpPCQ~  531 (576)
                      +|+.+.+...
T Consensus        97 ~i~~~~~~~~  106 (178)
T 3hm2_A           97 VIFIGGGLTA  106 (178)
T ss_dssp             EEEECC-TTC
T ss_pred             EEEECCcccH
Confidence            9997766544

>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20

Probab=94.09  E-value=0.046  Score=52.18  Aligned_cols=80  Identities=13%  Similarity=0.050  Sum_probs=52.5

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 008149          442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  521 (576)
Q Consensus       442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~D  521 (576)
                      .+.+|||+-||.|.+.+.+..+.-. ..|+++|+++.+....+.+....+.....++.+|+.++...     ....+.||
T Consensus        70 ~~~~vLDiG~G~G~~~~~la~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~-----~~~~~~fD  143 (240)
T 1xdz_A           70 QVNTICDVGAGAGFPSLPIKICFPH-LHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQR-----KDVRESYD  143 (240)
T ss_dssp             GCCEEEEECSSSCTTHHHHHHHCTT-CEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTC-----TTTTTCEE
T ss_pred             CCCEEEEecCCCCHHHHHHHHhCCC-CEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEeccHHHhccc-----ccccCCcc
Confidence            4678999999999888877743211 23789999999888888766544332233456676554310     00125799


Q ss_pred             EEEecC
Q 008149          522 FVICQN  527 (576)
Q Consensus       522 LVIGGp  527 (576)
                      +|+...
T Consensus       144 ~V~~~~  149 (240)
T 1xdz_A          144 IVTARA  149 (240)
T ss_dssp             EEEEEC
T ss_pred             EEEEec
Confidence            999654

>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*

Probab=94.08  E-value=0.044  Score=60.03  Aligned_cols=106  Identities=13%  Similarity=0.097  Sum_probs=62.1

Q ss_pred             Hhhhhhccccchhh-hccccccCCCCCcccccCCCCChhHHHHHHc----CC-------------ceeeEEEeeCCHHHH
Q 008149          419 SLRHCFQTDTLGYH-LSVLKSMFPGGLTMLSVFSGIGGAEVTLHRL----GI-------------KLKGVISIETSETNR  480 (576)
Q Consensus       419 ~Lg~sf~vdtv~~~-lsvLK~~f~~~l~VLsLFSGiGG~slGL~~a----Gi-------------~~k~vvavEid~~a~  480 (576)
                      ..|..|+...+... ...+.+  ..+.+|+|..||.|||-+.+.+.    +-             ....++++|+++.+.
T Consensus       147 ~~G~fyTP~~iv~~mv~~l~p--~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~  224 (541)
T 2ar0_A          147 GAGQYFTPRPLIKTIIHLLKP--QPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTR  224 (541)
T ss_dssp             ---CCCCCHHHHHHHHHHHCC--CTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHH
T ss_pred             cCCeeeCCHHHHHHHHHHhcc--CCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHH
Confidence            34555555544333 333332  23689999999999998776432    10             112589999999998


Q ss_pred             HHHHHHhhhcCCCC-----CccccccccccChhhHHHhhhccCCccEEEecCCCCCcc
Q 008149          481 RILKRWWESSGQTG-----ELVQIEDIQALTTKKFESLIHKLGSIDFVICQNSVPQIP  533 (576)
Q Consensus       481 ~t~k~~~~~tn~~g-----~l~~~~DI~~lt~~~Ie~l~~~~g~~DLVIGGpPCQ~FS  533 (576)
                      ++.+.+..-++...     ..+.++|.-...       ....+.||+|++-||.....
T Consensus       225 ~lA~~nl~l~gi~~~~~~~~~I~~gDtL~~~-------~~~~~~fD~Vv~NPPf~~~~  275 (541)
T 2ar0_A          225 RLALMNCLLHDIEGNLDHGGAIRLGNTLGSD-------GENLPKAHIVATNPPFGSAA  275 (541)
T ss_dssp             HHHHHHHHTTTCCCBGGGTBSEEESCTTSHH-------HHTSCCEEEEEECCCCTTCS
T ss_pred             HHHHHHHHHhCCCccccccCCeEeCCCcccc-------cccccCCeEEEECCCccccc
Confidence            88776543222221     223445532211       11236899999999987655

>2dkl_A Trinucleotide repeat containing 6C protein; TNRC6C, KIAA1582 protein, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1

Probab=94.08  E-value=0.055  Score=45.97  Aligned_cols=39  Identities=15%  Similarity=0.308  Sum_probs=33.6

Q ss_pred             hHHHHHHHhcCCCHHHHHHHHHHhCCCCChhhhhHhHhhcc
Q 008149           89 MEITLQLLEMGFSENQVSLAIEKFGSKTPISELADKIFSGQ  129 (576)
Q Consensus        89 ~~k~~~L~~MGFseeEas~AI~r~G~da~i~eLvD~I~Aaq  129 (576)
                      .+++..|+.|||+++.|..||..++.+  ++.-+++|+.-.
T Consensus        22 ~~~I~qL~~MGF~~~~a~~AL~~~n~n--~e~A~ewL~~h~   60 (85)
T 2dkl_A           22 SRLIKQLTDMGFPREPAEEALKSNNMN--LDQAMSALLEKK   60 (85)
T ss_dssp             HHHHHHHHHHTCCHHHHHHHHHHTTSC--HHHHHHHHHTTS
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHcCCC--HHHHHHHHHHCc
Confidence            568889999999999999999766654  888899999866

>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*

Probab=94.07  E-value=0.043  Score=54.49  Aligned_cols=78  Identities=18%  Similarity=0.200  Sum_probs=54.7

Q ss_pred             CCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcC-----------CCCCccccccccccChhh
Q 008149          441 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSG-----------QTGELVQIEDIQALTTKK  509 (576)
Q Consensus       441 ~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn-----------~~g~l~~~~DI~~lt~~~  509 (576)
                      +.+.+||+|.||.|++...+.+.|.  ..|.+||+|+...+..+.++ ..+           .+...++.+|..+.    
T Consensus        74 ~~~~~VLdiG~G~G~~~~~l~~~~~--~~v~~vDid~~~i~~ar~~~-~~~~~l~~~~~~~~~~~v~~~~~D~~~~----  146 (281)
T 1mjf_A           74 PKPKRVLVIGGGDGGTVREVLQHDV--DEVIMVEIDEDVIMVSKDLI-KIDNGLLEAMLNGKHEKAKLTIGDGFEF----  146 (281)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTTSCC--SEEEEEESCHHHHHHHHHHT-CTTTTHHHHHHTTCCSSEEEEESCHHHH----
T ss_pred             CCCCeEEEEcCCcCHHHHHHHhCCC--CEEEEEECCHHHHHHHHHHH-hhccccccccccCCCCcEEEEECchHHH----
Confidence            4567899999999999998887754  45889999999999888876 221           11122344555332    


Q ss_pred             HHHhhhccCCccEEEecCCC
Q 008149          510 FESLIHKLGSIDFVICQNSV  529 (576)
Q Consensus       510 Ie~l~~~~g~~DLVIGGpPC  529 (576)
                      +.   . .+.+|+|+.-+|+
T Consensus       147 l~---~-~~~fD~Ii~d~~~  162 (281)
T 1mjf_A          147 IK---N-NRGFDVIIADSTD  162 (281)
T ss_dssp             HH---H-CCCEEEEEEECCC
T ss_pred             hc---c-cCCeeEEEECCCC
Confidence            11   1 3579999998876

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A

Probab=94.06  E-value=0.14  Score=47.54  Aligned_cols=79  Identities=8%  Similarity=0.039  Sum_probs=53.8

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCC-----CCccccccccccChhhHHHhhhc
Q 008149          442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQT-----GELVQIEDIQALTTKKFESLIHK  516 (576)
Q Consensus       442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~-----g~l~~~~DI~~lt~~~Ie~l~~~  516 (576)
                      .+.+|||+-||.|.+...|.+.|-. ..++++|+++.+.+..+......+..     ...+..+|+..+..        .
T Consensus        29 ~~~~vLDiGcG~G~~~~~l~~~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~--------~   99 (217)
T 3jwh_A           29 NARRVIDLGCGQGNLLKILLKDSFF-EQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALTYQDK--------R   99 (217)
T ss_dssp             TCCEEEEETCTTCHHHHHHHHCTTC-SEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTTSCCG--------G
T ss_pred             CCCEEEEeCCCCCHHHHHHHhhCCC-CEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCcccccc--------c
Confidence            3568999999999999999987632 35789999999988888765432211     12244566644332        1


Q ss_pred             cCCccEEEecCCC
Q 008149          517 LGSIDFVICQNSV  529 (576)
Q Consensus       517 ~g~~DLVIGGpPC  529 (576)
                      .+.||+|+.....
T Consensus       100 ~~~fD~v~~~~~l  112 (217)
T 3jwh_A          100 FHGYDAATVIEVI  112 (217)
T ss_dssp             GCSCSEEEEESCG
T ss_pred             CCCcCEEeeHHHH
Confidence            2578988865443

>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}

Probab=94.05  E-value=0.089  Score=54.47  Aligned_cols=74  Identities=16%  Similarity=0.186  Sum_probs=53.2

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCC-CccccccccccChhhHHHhhhccCCc
Q 008149          442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGSI  520 (576)
Q Consensus       442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g-~l~~~~DI~~lt~~~Ie~l~~~~g~~  520 (576)
                      .+.+||||.||.|.+++.+.++|.  +-|+++|++ ......+.+....+... ..++.+|+.++...         +.+
T Consensus        63 ~~~~VLDlGcGtG~ls~~la~~g~--~~V~gvD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~---------~~~  130 (376)
T 3r0q_C           63 EGKTVLDVGTGSGILAIWSAQAGA--RKVYAVEAT-KMADHARALVKANNLDHIVEVIEGSVEDISLP---------EKV  130 (376)
T ss_dssp             TTCEEEEESCTTTHHHHHHHHTTC--SEEEEEESS-TTHHHHHHHHHHTTCTTTEEEEESCGGGCCCS---------SCE
T ss_pred             CCCEEEEeccCcCHHHHHHHhcCC--CEEEEEccH-HHHHHHHHHHHHcCCCCeEEEEECchhhcCcC---------Ccc
Confidence            467899999999999999999987  358899999 55555555544333222 23567888776521         579


Q ss_pred             cEEEecC
Q 008149          521 DFVICQN  527 (576)
Q Consensus       521 DLVIGGp  527 (576)
                      |+|+..+
T Consensus       131 D~Iv~~~  137 (376)
T 3r0q_C          131 DVIISEW  137 (376)
T ss_dssp             EEEEECC
T ss_pred             eEEEEcC
Confidence            9999744

>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A

Probab=94.04  E-value=0.079  Score=41.29  Aligned_cols=37  Identities=22%  Similarity=0.161  Sum_probs=29.4

Q ss_pred             hhhhHHHhcCCCChHHHHHHHHHhCCCCcHHHHHHHHHH
Q 008149           17 IEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITA   55 (576)
Q Consensus        17 s~~r~~li~MGFs~e~V~kAIqe~Ge~~~~~~Ile~Ll~   55 (576)
                      ++...+|++|||+.+.|.+|++.-.. | ++.-..+|+.
T Consensus        12 ~~~Ia~Lm~mGFsr~~ai~AL~~a~n-n-ve~AaniLle   48 (52)
T 2ooa_A           12 DAKIAKLMGEGYAFEEVKRALEIAQN-N-VEVARSILRE   48 (52)
T ss_dssp             HHHHHHHHHTTCCHHHHHHHHHHTTT-C-HHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHhCC-C-HHHHHHHHHH
Confidence            36889999999999999999999655 4 6665555554

>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A

Probab=94.02  E-value=0.065  Score=49.86  Aligned_cols=81  Identities=12%  Similarity=0.068  Sum_probs=55.3

Q ss_pred             hhhhccccccCCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhh
Q 008149          430 GYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKK  509 (576)
Q Consensus       430 ~~~lsvLK~~f~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~  509 (576)
                      .+.+..+.... .+.+|||+=||.|.+...|.+.|.+   |.++|+++......+..+..    ...++.+|+.++..  
T Consensus        31 ~~~~~~l~~~~-~~~~vLDiGcG~G~~~~~l~~~~~~---v~gvD~s~~~~~~a~~~~~~----~v~~~~~d~~~~~~--  100 (250)
T 2p7i_A           31 PFMVRAFTPFF-RPGNLLELGSFKGDFTSRLQEHFND---ITCVEASEEAISHAQGRLKD----GITYIHSRFEDAQL--  100 (250)
T ss_dssp             HHHHHHHGGGC-CSSCEEEESCTTSHHHHHHTTTCSC---EEEEESCHHHHHHHHHHSCS----CEEEEESCGGGCCC--
T ss_pred             HHHHHHHHhhc-CCCcEEEECCCCCHHHHHHHHhCCc---EEEEeCCHHHHHHHHHhhhC----CeEEEEccHHHcCc--
Confidence            34445555444 4568999999999999999988863   78899999988877765431    22345567765521  


Q ss_pred             HHHhhhccCCccEEEecC
Q 008149          510 FESLIHKLGSIDFVICQN  527 (576)
Q Consensus       510 Ie~l~~~~g~~DLVIGGp  527 (576)
                             -+.||+|+...
T Consensus       101 -------~~~fD~v~~~~  111 (250)
T 2p7i_A          101 -------PRRYDNIVLTH  111 (250)
T ss_dssp             -------SSCEEEEEEES
T ss_pred             -------CCcccEEEEhh
Confidence                   14678887543

>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*

Probab=94.02  E-value=0.076  Score=52.12  Aligned_cols=74  Identities=19%  Similarity=0.118  Sum_probs=52.5

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhh-----------------cCCCCCccccccccc
Q 008149          442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWES-----------------SGQTGELVQIEDIQA  504 (576)
Q Consensus       442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~-----------------tn~~g~l~~~~DI~~  504 (576)
                      .+.+|||+=||.|....-|.+.|++   |++||+++.+.+..+.....                 .......+..+|+.+
T Consensus        68 ~~~~vLD~GCG~G~~~~~La~~G~~---V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~  144 (252)
T 2gb4_A           68 SGLRVFFPLCGKAIEMKWFADRGHT---VVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFD  144 (252)
T ss_dssp             CSCEEEETTCTTCTHHHHHHHTTCE---EEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTT
T ss_pred             CCCeEEEeCCCCcHHHHHHHHCCCe---EEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECcccc
Confidence            4679999999999999999999984   78999999998877543210                 001122345678877


Q ss_pred             cChhhHHHhhhccCCccEEEe
Q 008149          505 LTTKKFESLIHKLGSIDFVIC  525 (576)
Q Consensus       505 lt~~~Ie~l~~~~g~~DLVIG  525 (576)
                      +....       .+.||+|+.
T Consensus       145 l~~~~-------~~~FD~V~~  158 (252)
T 2gb4_A          145 LPRAN-------IGKFDRIWD  158 (252)
T ss_dssp             GGGGC-------CCCEEEEEE
T ss_pred             CCccc-------CCCEEEEEE
Confidence            65321       257999984

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42

Probab=93.99  E-value=0.045  Score=51.88  Aligned_cols=76  Identities=20%  Similarity=0.111  Sum_probs=52.0

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 008149          442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  521 (576)
Q Consensus       442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~D  521 (576)
                      .+.+|||+-||.|.+...|.+.+.  ..++++|+++...+..+......+.....+...|+.++..        ..+.||
T Consensus        79 ~~~~vLDiGcG~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~--------~~~~fD  148 (241)
T 2ex4_A           79 GTSCALDCGAGIGRITKRLLLPLF--REVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTP--------EPDSYD  148 (241)
T ss_dssp             CCSEEEEETCTTTHHHHHTTTTTC--SEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCC--------CSSCEE
T ss_pred             CCCEEEEECCCCCHHHHHHHHhcC--CEEEEEeCCHHHHHHHHHHhhhcCCceEEEEEcChhhcCC--------CCCCEE
Confidence            468999999999999998877763  3578999999998888776543211111234566655542        124699


Q ss_pred             EEEecC
Q 008149          522 FVICQN  527 (576)
Q Consensus       522 LVIGGp  527 (576)
                      +|+...
T Consensus       149 ~v~~~~  154 (241)
T 2ex4_A          149 VIWIQW  154 (241)
T ss_dssp             EEEEES
T ss_pred             EEEEcc
Confidence            998653

>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*

Probab=93.95  E-value=0.065  Score=51.70  Aligned_cols=79  Identities=15%  Similarity=0.129  Sum_probs=54.7

Q ss_pred             CCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCC-CCccccccccccChhhHHHhhhccC
Q 008149          440 FPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQT-GELVQIEDIQALTTKKFESLIHKLG  518 (576)
Q Consensus       440 f~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~-g~l~~~~DI~~lt~~~Ie~l~~~~g  518 (576)
                      .+.+.+|||+-||.|++...+.+.|.  ..++++|+++......+......+.. ...+..+|+.++...       ..+
T Consensus        62 ~~~~~~vLDiGcG~G~~~~~l~~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-------~~~  132 (298)
T 1ri5_A           62 TKRGDSVLDLGCGKGGDLLKYERAGI--GEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMD-------LGK  132 (298)
T ss_dssp             CCTTCEEEEETCTTTTTHHHHHHHTC--SEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCC-------CSS
T ss_pred             CCCCCeEEEECCCCCHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCccccccC-------CCC
Confidence            34678999999999999999988885  34789999999988887765433211 122456777665310       124


Q ss_pred             CccEEEecC
Q 008149          519 SIDFVICQN  527 (576)
Q Consensus       519 ~~DLVIGGp  527 (576)
                      .||+|+...
T Consensus       133 ~fD~v~~~~  141 (298)
T 1ri5_A          133 EFDVISSQF  141 (298)
T ss_dssp             CEEEEEEES
T ss_pred             CcCEEEECc
Confidence            688888654

>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*

Probab=93.91  E-value=0.031  Score=55.03  Aligned_cols=98  Identities=19%  Similarity=0.080  Sum_probs=62.5

Q ss_pred             HHhhhhhccc--cchhhhccccccCCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCC
Q 008149          418 ESLRHCFQTD--TLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGE  495 (576)
Q Consensus       418 k~Lg~sf~vd--tv~~~lsvLK~~f~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~  495 (576)
                      |.+|-.|-+|  .+..++..+..  ..+-+|||+.||.|.++..|.+.|-  .-|+++|+|+.....++..    .....
T Consensus         7 k~~GQnfl~d~~i~~~iv~~~~~--~~~~~VLDiG~G~G~lt~~L~~~~~--~~v~avEid~~~~~~~~~~----~~~~v   78 (249)
T 3ftd_A            7 KSFGQHLLVSEGVLKKIAEELNI--EEGNTVVEVGGGTGNLTKVLLQHPL--KKLYVIELDREMVENLKSI----GDERL   78 (249)
T ss_dssp             -CCCSSCEECHHHHHHHHHHTTC--CTTCEEEEEESCHHHHHHHHTTSCC--SEEEEECCCHHHHHHHTTS----CCTTE
T ss_pred             CcccccccCCHHHHHHHHHhcCC--CCcCEEEEEcCchHHHHHHHHHcCC--CeEEEEECCHHHHHHHHhc----cCCCe
Confidence            3445555333  33333333321  2356899999999999999988863  3478999999998877643    11222


Q ss_pred             ccccccccccChhhHHHhhhccCCccEEEecCCCC
Q 008149          496 LVQIEDIQALTTKKFESLIHKLGSIDFVICQNSVP  530 (576)
Q Consensus       496 l~~~~DI~~lt~~~Ie~l~~~~g~~DLVIGGpPCQ  530 (576)
                      .++.+|+.+++-.++      .+ ..+|+|-+|=+
T Consensus        79 ~~i~~D~~~~~~~~~------~~-~~~vv~NlPy~  106 (249)
T 3ftd_A           79 EVINEDASKFPFCSL------GK-ELKVVGNLPYN  106 (249)
T ss_dssp             EEECSCTTTCCGGGS------CS-SEEEEEECCTT
T ss_pred             EEEEcchhhCChhHc------cC-CcEEEEECchh
Confidence            366789988875432      12 34788877754

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*

Probab=93.89  E-value=0.053  Score=50.13  Aligned_cols=72  Identities=11%  Similarity=-0.016  Sum_probs=53.9

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 008149          442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  521 (576)
Q Consensus       442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~D  521 (576)
                      .+.+|||+-||.|.+...|.+.|.   .|+++|+++.+....+......  ....+..+|+.++..         .+.||
T Consensus        51 ~~~~vLDiGcG~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~--~~~~~~~~d~~~~~~---------~~~fD  116 (216)
T 3ofk_A           51 AVSNGLEIGCAAGAFTEKLAPHCK---RLTVIDVMPRAIGRACQRTKRW--SHISWAATDILQFST---------AELFD  116 (216)
T ss_dssp             SEEEEEEECCTTSHHHHHHGGGEE---EEEEEESCHHHHHHHHHHTTTC--SSEEEEECCTTTCCC---------SCCEE
T ss_pred             CCCcEEEEcCCCCHHHHHHHHcCC---EEEEEECCHHHHHHHHHhcccC--CCeEEEEcchhhCCC---------CCCcc
Confidence            357899999999999999998874   4789999999988887654322  122356678877652         25799


Q ss_pred             EEEecC
Q 008149          522 FVICQN  527 (576)
Q Consensus       522 LVIGGp  527 (576)
                      +|+...
T Consensus       117 ~v~~~~  122 (216)
T 3ofk_A          117 LIVVAE  122 (216)
T ss_dssp             EEEEES
T ss_pred             EEEEcc
Confidence            999753

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41

Probab=93.89  E-value=0.11  Score=49.72  Aligned_cols=93  Identities=14%  Similarity=0.198  Sum_probs=61.7

Q ss_pred             ccccchhhhccccccCCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccc
Q 008149          425 QTDTLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQA  504 (576)
Q Consensus       425 ~vdtv~~~lsvLK~~f~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~  504 (576)
                      +...+..++..+..  ..+.+|||+-||.|.+...|.+.+.   .|+++|+++......+......+.+...+..+|+.+
T Consensus        22 ~~~~~~~l~~~l~~--~~~~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~   96 (260)
T 1vl5_A           22 KGSDLAKLMQIAAL--KGNEEVLDVATGGGHVANAFAPFVK---KVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQ   96 (260)
T ss_dssp             -CCCHHHHHHHHTC--CSCCEEEEETCTTCHHHHHHGGGSS---EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-C
T ss_pred             CHHHHHHHHHHhCC--CCCCEEEEEeCCCCHHHHHHHHhCC---EEEEEeCCHHHHHHHHHHHHhcCCCceEEEEecHHh
Confidence            44445555555432  2467999999999999999988874   478999999988777766543322223356678876


Q ss_pred             cChhhHHHhhhccCCccEEEecCCCC
Q 008149          505 LTTKKFESLIHKLGSIDFVICQNSVP  530 (576)
Q Consensus       505 lt~~~Ie~l~~~~g~~DLVIGGpPCQ  530 (576)
                      +.-.        -+.||+|+...-.+
T Consensus        97 l~~~--------~~~fD~V~~~~~l~  114 (260)
T 1vl5_A           97 MPFT--------DERFHIVTCRIAAH  114 (260)
T ss_dssp             CCSC--------TTCEEEEEEESCGG
T ss_pred             CCCC--------CCCEEEEEEhhhhH
Confidence            5411        14799999765443

>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*

Probab=93.87  E-value=0.068  Score=51.13  Aligned_cols=85  Identities=15%  Similarity=0.071  Sum_probs=56.2

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 008149          442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  521 (576)
Q Consensus       442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~D  521 (576)
                      .+.+|||+.||.|.+.+.+.+.+-. ..|++||+++......+.+....+.....++.+|+.++-...+     ..+.+|
T Consensus        34 ~~~~vLDiGcG~G~~~~~lA~~~p~-~~v~giD~s~~~l~~a~~~~~~~~l~nv~~~~~Da~~~l~~~~-----~~~~~d  107 (218)
T 3dxy_A           34 EAPVTLEIGFGMGASLVAMAKDRPE-QDFLGIEVHSPGVGACLASAHEEGLSNLRVMCHDAVEVLHKMI-----PDNSLR  107 (218)
T ss_dssp             CCCEEEEESCTTCHHHHHHHHHCTT-SEEEEECSCHHHHHHHHHHHHHTTCSSEEEECSCHHHHHHHHS-----CTTCEE
T ss_pred             CCCeEEEEeeeChHHHHHHHHHCCC-CeEEEEEecHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHc-----CCCChh
Confidence            3568999999999999988876533 2478999999988777765543332223345566655311111     126799


Q ss_pred             EEEecCCCCCc
Q 008149          522 FVICQNSVPQI  532 (576)
Q Consensus       522 LVIGGpPCQ~F  532 (576)
                      +|+--+|+.-.
T Consensus       108 ~v~~~~~~p~~  118 (218)
T 3dxy_A          108 MVQLFFPDPWH  118 (218)
T ss_dssp             EEEEESCCCCC
T ss_pred             eEEEeCCCCcc
Confidence            99988776533

>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*

Probab=93.86  E-value=0.065  Score=52.36  Aligned_cols=79  Identities=14%  Similarity=0.177  Sum_probs=53.2

Q ss_pred             CCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 008149          441 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI  520 (576)
Q Consensus       441 ~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~  520 (576)
                      +.+.+|||+-||.|...+.+..+.=. ..|+++|+++.+....+.+....+.....++.+|+.++....     ...+.|
T Consensus        79 ~~~~~vLDiG~G~G~~~i~la~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~l~~v~~~~~d~~~~~~~~-----~~~~~f  152 (249)
T 3g89_A           79 QGPLRVLDLGTGAGFPGLPLKIVRPE-LELVLVDATRKKVAFVERAIEVLGLKGARALWGRAEVLAREA-----GHREAY  152 (249)
T ss_dssp             CSSCEEEEETCTTTTTHHHHHHHCTT-CEEEEEESCHHHHHHHHHHHHHHTCSSEEEEECCHHHHTTST-----TTTTCE
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHHhCCCceEEEECcHHHhhccc-----ccCCCc
Confidence            45789999999999888887765211 247899999999998887765443322334556665543210     012579


Q ss_pred             cEEEe
Q 008149          521 DFVIC  525 (576)
Q Consensus       521 DLVIG  525 (576)
                      |+|+.
T Consensus       153 D~I~s  157 (249)
T 3g89_A          153 ARAVA  157 (249)
T ss_dssp             EEEEE
T ss_pred             eEEEE
Confidence            99995

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A

Probab=93.86  E-value=0.13  Score=47.82  Aligned_cols=46  Identities=11%  Similarity=0.030  Sum_probs=38.0

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhh
Q 008149          442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWE  488 (576)
Q Consensus       442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~  488 (576)
                      .+.+|||+-||.|.+...+.+.|-. ..++++|+++.+....+....
T Consensus        29 ~~~~vLDiGcG~G~~~~~l~~~~~~-~~v~gvD~s~~~~~~a~~~~~   74 (219)
T 3jwg_A           29 NAKKVIDLGCGEGNLLSLLLKDKSF-EQITGVDVSYSVLERAKDRLK   74 (219)
T ss_dssp             TCCEEEEETCTTCHHHHHHHTSTTC-CEEEEEESCHHHHHHHHHHHT
T ss_pred             CCCEEEEecCCCCHHHHHHHhcCCC-CEEEEEECCHHHHHHHHHHHH
Confidence            3578999999999999999987732 357899999999888877654

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}

Probab=93.83  E-value=0.12  Score=47.72  Aligned_cols=84  Identities=20%  Similarity=0.163  Sum_probs=55.9

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 008149          442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  521 (576)
Q Consensus       442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~D  521 (576)
                      .+.+|||+-||.|.+...+.+.+-+-..|+++|+++......+.+....+.....+..+|+...-.        ..+.+|
T Consensus        77 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~--------~~~~fD  148 (215)
T 2yxe_A           77 PGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYDNVIVIVGDGTLGYE--------PLAPYD  148 (215)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCTTEEEEESCGGGCCG--------GGCCEE
T ss_pred             CCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCC--------CCCCee
Confidence            467999999999999988877652112478999999988877776544322222244566532211        125799


Q ss_pred             EEEecCCCCCcc
Q 008149          522 FVICQNSVPQIP  533 (576)
Q Consensus       522 LVIGGpPCQ~FS  533 (576)
                      +|+...++..+.
T Consensus       149 ~v~~~~~~~~~~  160 (215)
T 2yxe_A          149 RIYTTAAGPKIP  160 (215)
T ss_dssp             EEEESSBBSSCC
T ss_pred             EEEECCchHHHH
Confidence            999887776543

>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}

Probab=93.83  E-value=0.071  Score=53.28  Aligned_cols=81  Identities=15%  Similarity=0.072  Sum_probs=55.7

Q ss_pred             CCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 008149          441 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI  520 (576)
Q Consensus       441 ~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~  520 (576)
                      +.+.+||||-||.|.+++.|.+.|.+   |.++|+++...+..+......      ....|+.+++.+....   ..+.|
T Consensus        44 ~~g~~VLDlGcGtG~~a~~La~~g~~---V~gvD~S~~ml~~Ar~~~~~~------~v~~~~~~~~~~~~~~---~~~~f  111 (261)
T 3iv6_A           44 VPGSTVAVIGASTRFLIEKALERGAS---VTVFDFSQRMCDDLAEALADR------CVTIDLLDITAEIPKE---LAGHF  111 (261)
T ss_dssp             CTTCEEEEECTTCHHHHHHHHHTTCE---EEEEESCHHHHHHHHHHTSSS------CCEEEECCTTSCCCGG---GTTCC
T ss_pred             CCcCEEEEEeCcchHHHHHHHhcCCE---EEEEECCHHHHHHHHHHHHhc------cceeeeeecccccccc---cCCCc
Confidence            34679999999999999999999864   789999999988887653211      2345665554310000   12579


Q ss_pred             cEEEecCCCCCcc
Q 008149          521 DFVICQNSVPQIP  533 (576)
Q Consensus       521 DLVIGGpPCQ~FS  533 (576)
                      |+|+.....+.|.
T Consensus       112 D~Vv~~~~l~~~~  124 (261)
T 3iv6_A          112 DFVLNDRLINRFT  124 (261)
T ss_dssp             SEEEEESCGGGSC
T ss_pred             cEEEEhhhhHhCC
Confidence            9999876555443

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}

Probab=93.82  E-value=0.1  Score=49.25  Aligned_cols=72  Identities=8%  Similarity=-0.012  Sum_probs=52.5

Q ss_pred             CCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCcccccccc-ccChhhHHHhhhccCC
Q 008149          441 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQ-ALTTKKFESLIHKLGS  519 (576)
Q Consensus       441 ~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~-~lt~~~Ie~l~~~~g~  519 (576)
                      +.+.+|||+-||.|.+...+.+.|.   .|+++|+++......+..     .+...+..+|+. .+...       .-+.
T Consensus        47 ~~~~~vLDiGcG~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~-----~~~~~~~~~d~~~~~~~~-------~~~~  111 (226)
T 3m33_A           47 TPQTRVLEAGCGHGPDAARFGPQAA---RWAAYDFSPELLKLARAN-----APHADVYEWNGKGELPAG-------LGAP  111 (226)
T ss_dssp             CTTCEEEEESCTTSHHHHHHGGGSS---EEEEEESCHHHHHHHHHH-----CTTSEEEECCSCSSCCTT-------CCCC
T ss_pred             CCCCeEEEeCCCCCHHHHHHHHcCC---EEEEEECCHHHHHHHHHh-----CCCceEEEcchhhccCCc-------CCCC
Confidence            4578999999999999999999886   378999999988877654     222335677874 33210       0257


Q ss_pred             ccEEEecC
Q 008149          520 IDFVICQN  527 (576)
Q Consensus       520 ~DLVIGGp  527 (576)
                      ||+|+...
T Consensus       112 fD~v~~~~  119 (226)
T 3m33_A          112 FGLIVSRR  119 (226)
T ss_dssp             EEEEEEES
T ss_pred             EEEEEeCC
Confidence            99999774

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}

Probab=93.76  E-value=0.079  Score=49.55  Aligned_cols=75  Identities=16%  Similarity=0.139  Sum_probs=52.4

Q ss_pred             ccCCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhcc
Q 008149          438 SMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKL  517 (576)
Q Consensus       438 ~~f~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~  517 (576)
                      ..++.+.+|||+-||.|.+...+.+. .   .++++|+++...+..+......+ ....+...|+.++..         .
T Consensus        29 ~~~~~~~~vLdiG~G~G~~~~~l~~~-~---~v~~vD~s~~~~~~a~~~~~~~~-~~~~~~~~d~~~~~~---------~   94 (243)
T 3d2l_A           29 EQVEPGKRIADIGCGTGTATLLLADH-Y---EVTGVDLSEEMLEIAQEKAMETN-RHVDFWVQDMRELEL---------P   94 (243)
T ss_dssp             HHSCTTCEEEEESCTTCHHHHHHTTT-S---EEEEEESCHHHHHHHHHHHHHTT-CCCEEEECCGGGCCC---------S
T ss_pred             HHcCCCCeEEEecCCCCHHHHHHhhC-C---eEEEEECCHHHHHHHHHhhhhcC-CceEEEEcChhhcCC---------C
Confidence            33445689999999999999888777 3   47899999998888777654332 222345677766532         1


Q ss_pred             CCccEEEec
Q 008149          518 GSIDFVICQ  526 (576)
Q Consensus       518 g~~DLVIGG  526 (576)
                      +.+|+|+..
T Consensus        95 ~~fD~v~~~  103 (243)
T 3d2l_A           95 EPVDAITIL  103 (243)
T ss_dssp             SCEEEEEEC
T ss_pred             CCcCEEEEe
Confidence            468888854

>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*

Probab=93.76  E-value=0.055  Score=54.33  Aligned_cols=81  Identities=14%  Similarity=0.194  Sum_probs=53.7

Q ss_pred             CCCCcccccCCCCChhHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHhhhc----CCCCCccccccccccChhhHHHhhh
Q 008149          441 PGGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESS----GQTGELVQIEDIQALTTKKFESLIH  515 (576)
Q Consensus       441 ~~~l~VLsLFSGiGG~slGL~~a-Gi~~k~vvavEid~~a~~t~k~~~~~t----n~~g~l~~~~DI~~lt~~~Ie~l~~  515 (576)
                      +.+.+||+|.||.|++...+.+. +.  ..|.+||+|+...+..+.++...    +.+...++.+|..+.-.       .
T Consensus        89 ~~~~~VLdiG~G~G~~~~~l~~~~~~--~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~-------~  159 (296)
T 1inl_A           89 PNPKKVLIIGGGDGGTLREVLKHDSV--EKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVR-------K  159 (296)
T ss_dssp             SSCCEEEEEECTTCHHHHHHTTSTTC--SEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGG-------G
T ss_pred             CCCCEEEEEcCCcCHHHHHHHhcCCC--CEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHh-------h
Confidence            35679999999999999888776 33  45889999999999888876421    11222345566544211       1


Q ss_pred             ccCCccEEEecCCCC
Q 008149          516 KLGSIDFVICQNSVP  530 (576)
Q Consensus       516 ~~g~~DLVIGGpPCQ  530 (576)
                      ..+.+|+|+..+||.
T Consensus       160 ~~~~fD~Ii~d~~~~  174 (296)
T 1inl_A          160 FKNEFDVIIIDSTDP  174 (296)
T ss_dssp             CSSCEEEEEEEC---
T ss_pred             CCCCceEEEEcCCCc
Confidence            125799999888774

>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A

Probab=93.70  E-value=0.17  Score=47.33  Aligned_cols=79  Identities=15%  Similarity=0.146  Sum_probs=51.2

Q ss_pred             CCCcccccCCCCChhHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 008149          442 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI  520 (576)
Q Consensus       442 ~~l~VLsLFSGiGG~slGL~~a-Gi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~  520 (576)
                      .+.+|||+.||.|.+...+.+. |-. ..|+++|+++.+.+..+.+-...  ....+..+|+.+...  +.   ...+.+
T Consensus        73 ~~~~vLDlG~G~G~~~~~la~~~~~~-~~v~~vD~s~~~~~~~~~~~~~~--~~v~~~~~d~~~~~~--~~---~~~~~~  144 (227)
T 1g8a_A           73 PGKSVLYLGIASGTTASHVSDIVGWE-GKIFGIEFSPRVLRELVPIVEER--RNIVPILGDATKPEE--YR---ALVPKV  144 (227)
T ss_dssp             TTCEEEEETTTSTTHHHHHHHHHCTT-SEEEEEESCHHHHHHHHHHHSSC--TTEEEEECCTTCGGG--GT---TTCCCE
T ss_pred             CCCEEEEEeccCCHHHHHHHHHhCCC-eEEEEEECCHHHHHHHHHHHhcc--CCCEEEEccCCCcch--hh---cccCCc
Confidence            4678999999999999988765 421 24789999998766655543221  223345677765321  10   012479


Q ss_pred             cEEEecCC
Q 008149          521 DFVICQNS  528 (576)
Q Consensus       521 DLVIGGpP  528 (576)
                      |+|+...|
T Consensus       145 D~v~~~~~  152 (227)
T 1g8a_A          145 DVIFEDVA  152 (227)
T ss_dssp             EEEEECCC
T ss_pred             eEEEECCC
Confidence            99997766

>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1

Probab=93.63  E-value=0.071  Score=41.57  Aligned_cols=39  Identities=21%  Similarity=0.214  Sum_probs=32.1

Q ss_pred             hHHHHHHHhcCCCHHH-HHHHHHHhCCCCChhhhhHhHhhcc
Q 008149           89 MEITLQLLEMGFSENQ-VSLAIEKFGSKTPISELADKIFSGQ  129 (576)
Q Consensus        89 ~~k~~~L~~MGFseeE-as~AI~r~G~da~i~eLvD~I~Aaq  129 (576)
                      .+++..|..|||++++ +..||.+++-|  |+.-+|.++...
T Consensus        10 ~~~l~~L~~MGF~d~~~n~~AL~~~~Gd--v~~Ave~L~~~~   49 (54)
T 2dah_A           10 QVQLEQLRSMGFLNREANLQALIATGGD--VDAAVEKLRQSS   49 (54)
T ss_dssp             HHHHHHHHHHTCCCHHHHHHHHHHHTSC--HHHHHHHHHHHS
T ss_pred             HHHHHHHHHcCCCcHHHHHHHHHHcCCC--HHHHHHHHHhCC
Confidence            4588899999998877 59999999976  777788888654

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*

Probab=93.61  E-value=0.13  Score=48.68  Aligned_cols=81  Identities=23%  Similarity=0.271  Sum_probs=54.2

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 008149          442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  521 (576)
Q Consensus       442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~D  521 (576)
                      .+.+|||+.||.|.+...+.+.+-  ..|+++|+++...+..+.+....+.....+..+|+. ..   +.    ..+.+|
T Consensus        91 ~~~~vLdiG~G~G~~~~~la~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~-~~---~~----~~~~fD  160 (235)
T 1jg1_A           91 PGMNILEVGTGSGWNAALISEIVK--TDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGS-KG---FP----PKAPYD  160 (235)
T ss_dssp             TTCCEEEECCTTSHHHHHHHHHHC--SCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGG-GC---CG----GGCCEE
T ss_pred             CCCEEEEEeCCcCHHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEECCcc-cC---CC----CCCCcc
Confidence            457899999999999988877652  247899999998888777654432222223455651 11   11    123599


Q ss_pred             EEEecCCCCCc
Q 008149          522 FVICQNSVPQI  532 (576)
Q Consensus       522 LVIGGpPCQ~F  532 (576)
                      +|+...++..+
T Consensus       161 ~Ii~~~~~~~~  171 (235)
T 1jg1_A          161 VIIVTAGAPKI  171 (235)
T ss_dssp             EEEECSBBSSC
T ss_pred             EEEECCcHHHH
Confidence            99988776654

>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}

Probab=93.57  E-value=0.12  Score=49.27  Aligned_cols=84  Identities=13%  Similarity=0.015  Sum_probs=58.9

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCC-CCccccccccccChhhHHHhhhccCCc
Q 008149          442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQT-GELVQIEDIQALTTKKFESLIHKLGSI  520 (576)
Q Consensus       442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~-g~l~~~~DI~~lt~~~Ie~l~~~~g~~  520 (576)
                      .+.+|||+-||.|...+.|.+++- -..|+++|+++...+..+.++...+.. ...++.+|+.+.-.+   .+   .+.|
T Consensus        71 ~~~~vLDiG~G~G~~~~~la~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~---~~---~~~f  143 (232)
T 3ntv_A           71 NVKNILEIGTAIGYSSMQFASISD-DIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFEN---VN---DKVY  143 (232)
T ss_dssp             TCCEEEEECCSSSHHHHHHHTTCT-TCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCHHH---HT---TSCE
T ss_pred             CCCEEEEEeCchhHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHh---hc---cCCc
Confidence            357899999999999999988432 235789999999998888887655432 223556777654220   11   2579


Q ss_pred             cEEEecCCCCCc
Q 008149          521 DFVICQNSVPQI  532 (576)
Q Consensus       521 DLVIGGpPCQ~F  532 (576)
                      |+|+-..++...
T Consensus       144 D~V~~~~~~~~~  155 (232)
T 3ntv_A          144 DMIFIDAAKAQS  155 (232)
T ss_dssp             EEEEEETTSSSH
T ss_pred             cEEEEcCcHHHH
Confidence            999987776653

>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*

Probab=93.56  E-value=0.15  Score=50.04  Aligned_cols=73  Identities=18%  Similarity=0.233  Sum_probs=53.7

Q ss_pred             CCCCcccccCCCCChhHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHhhhcCCC-CCccccccccccChhhHHHhhhccC
Q 008149          441 PGGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQT-GELVQIEDIQALTTKKFESLIHKLG  518 (576)
Q Consensus       441 ~~~l~VLsLFSGiGG~slGL~~a-Gi~~k~vvavEid~~a~~t~k~~~~~tn~~-g~l~~~~DI~~lt~~~Ie~l~~~~g  518 (576)
                      +.+.+|||+-||.|++...+.+. |.   .|+++|+++......+......+.. ...+..+|+.++           .+
T Consensus        71 ~~~~~vLDiGcG~G~~~~~la~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-----------~~  136 (302)
T 3hem_A           71 EPGMTLLDIGCGWGSTMRHAVAEYDV---NVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEF-----------DE  136 (302)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHHCC---EEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGGC-----------CC
T ss_pred             CCcCEEEEeeccCcHHHHHHHHhCCC---EEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHHc-----------CC
Confidence            34679999999999999988876 85   3789999999888887766544322 122556777665           15


Q ss_pred             CccEEEecC
Q 008149          519 SIDFVICQN  527 (576)
Q Consensus       519 ~~DLVIGGp  527 (576)
                      .||+|+...
T Consensus       137 ~fD~v~~~~  145 (302)
T 3hem_A          137 PVDRIVSLG  145 (302)
T ss_dssp             CCSEEEEES
T ss_pred             CccEEEEcc
Confidence            789998654

>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53

Probab=93.48  E-value=0.13  Score=48.57  Aligned_cols=82  Identities=17%  Similarity=0.073  Sum_probs=55.3

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 008149          442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  521 (576)
Q Consensus       442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~D  521 (576)
                      .+.+|||+-||.|.+.+.+.+..=. ..++++|+++.+....+.+....+.....++.+|+.++.     ..+ ..+.+|
T Consensus        38 ~~~~vLDiGcG~G~~~~~la~~~p~-~~v~giD~s~~~l~~a~~~~~~~~~~nv~~~~~d~~~l~-----~~~-~~~~~d  110 (213)
T 2fca_A           38 DNPIHIEVGTGKGQFISGMAKQNPD-INYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLT-----DVF-EPGEVK  110 (213)
T ss_dssp             CCCEEEEECCTTSHHHHHHHHHCTT-SEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHH-----HHC-CTTSCC
T ss_pred             CCceEEEEecCCCHHHHHHHHHCCC-CCEEEEEechHHHHHHHHHHHHcCCCCEEEEeCCHHHHH-----hhc-CcCCcC
Confidence            3578999999999999998876211 247899999999887776654433222335567777642     111 125689


Q ss_pred             EEEecCCCC
Q 008149          522 FVICQNSVP  530 (576)
Q Consensus       522 LVIGGpPCQ  530 (576)
                      .|+-.+|+.
T Consensus       111 ~v~~~~~~p  119 (213)
T 2fca_A          111 RVYLNFSDP  119 (213)
T ss_dssp             EEEEESCCC
T ss_pred             EEEEECCCC
Confidence            998777654

>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A

Probab=93.48  E-value=0.068  Score=41.68  Aligned_cols=29  Identities=17%  Similarity=0.186  Sum_probs=26.1

Q ss_pred             hHHHHHHHhcCCCHHHHHHHHHHhCCCCC
Q 008149           89 MEITLQLLEMGFSENQVSLAIEKFGSKTP  117 (576)
Q Consensus        89 ~~k~~~L~~MGFseeEas~AI~r~G~da~  117 (576)
                      ++++..|+.|||+.++|..|+..++.|..
T Consensus        12 ~~~Ia~Lm~mGFsr~~ai~AL~~a~nnve   40 (52)
T 2ooa_A           12 DAKIAKLMGEGYAFEEVKRALEIAQNNVE   40 (52)
T ss_dssp             HHHHHHHHHTTCCHHHHHHHHHHTTTCHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHhCCCHH
Confidence            46899999999999999999999999843

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0

Probab=93.46  E-value=0.16  Score=47.33  Aligned_cols=81  Identities=14%  Similarity=0.237  Sum_probs=54.6

Q ss_pred             CCcccccCCCCChhHHHHHHc---CCceeeEEEeeCCHHHHHHHHHHhhhcCCCC-CccccccccccChhhHHHhhhcc-
Q 008149          443 GLTMLSVFSGIGGAEVTLHRL---GIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKL-  517 (576)
Q Consensus       443 ~l~VLsLFSGiGG~slGL~~a---Gi~~k~vvavEid~~a~~t~k~~~~~tn~~g-~l~~~~DI~~lt~~~Ie~l~~~~-  517 (576)
                      +.+|||+-||.|+..+.+.+.   +.   .|+++|+++......+.++...+... ..+..+|+.+.    +..+.... 
T Consensus        65 ~~~vLdiG~G~G~~~~~la~~~~~~~---~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~----~~~~~~~~~  137 (225)
T 3tr6_A           65 AKKVIDIGTFTGYSAIAMGLALPKDG---TLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDT----LAELIHAGQ  137 (225)
T ss_dssp             CSEEEEECCTTSHHHHHHHTTCCTTC---EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHH----HHHHHTTTC
T ss_pred             CCEEEEeCCcchHHHHHHHHhCCCCC---EEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHH----HHHhhhccC
Confidence            468999999999999988875   43   47899999999888888876543322 22445665432    21111111 


Q ss_pred             -CCccEEEecCCCC
Q 008149          518 -GSIDFVICQNSVP  530 (576)
Q Consensus       518 -g~~DLVIGGpPCQ  530 (576)
                       +.||+|+--.+..
T Consensus       138 ~~~fD~v~~~~~~~  151 (225)
T 3tr6_A          138 AWQYDLIYIDADKA  151 (225)
T ss_dssp             TTCEEEEEECSCGG
T ss_pred             CCCccEEEECCCHH
Confidence             5899999665543

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7

Probab=93.45  E-value=0.069  Score=50.34  Aligned_cols=94  Identities=17%  Similarity=0.162  Sum_probs=59.4

Q ss_pred             hhhhccccccCCCCCcccccCCCCChhHHHHHH-cCC-----ceeeEEEeeCCHHHHHHHHHHhhhcC-----CCCCccc
Q 008149          430 GYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHR-LGI-----KLKGVISIETSETNRRILKRWWESSG-----QTGELVQ  498 (576)
Q Consensus       430 ~~~lsvLK~~f~~~l~VLsLFSGiGG~slGL~~-aGi-----~~k~vvavEid~~a~~t~k~~~~~tn-----~~g~l~~  498 (576)
                      +..+..|......+.+|||+-||.|.+...+.+ .|.     . ..|+++|+++...+..+.+....+     .....+.
T Consensus        72 ~~~~~~l~~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~  150 (227)
T 1r18_A           72 AFALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDAD-TRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIV  150 (227)
T ss_dssp             HHHHHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTT-CEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEE
T ss_pred             HHHHHHHHhhCCCCCEEEEECCCccHHHHHHHHhcccccCCcc-CEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEE
Confidence            333444543344578999999999999888766 341     0 147899999998877766543221     1112244


Q ss_pred             cccccccChhhHHHhhhccCCccEEEecCCCCCc
Q 008149          499 IEDIQALTTKKFESLIHKLGSIDFVICQNSVPQI  532 (576)
Q Consensus       499 ~~DI~~lt~~~Ie~l~~~~g~~DLVIGGpPCQ~F  532 (576)
                      .+|+.+--.        ..+.||+|+...++..+
T Consensus       151 ~~d~~~~~~--------~~~~fD~I~~~~~~~~~  176 (227)
T 1r18_A          151 EGDGRKGYP--------PNAPYNAIHVGAAAPDT  176 (227)
T ss_dssp             ESCGGGCCG--------GGCSEEEEEECSCBSSC
T ss_pred             ECCcccCCC--------cCCCccEEEECCchHHH
Confidence            566654111        12579999998888765

>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}

Probab=93.40  E-value=0.15  Score=50.19  Aligned_cols=53  Identities=17%  Similarity=0.084  Sum_probs=43.4

Q ss_pred             cccCCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhc
Q 008149          437 KSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESS  490 (576)
Q Consensus       437 K~~f~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~t  490 (576)
                      .++.+.+-+|+|+=||.|-+.+.+.+.|. ...|+|+|+++.+...-+.+-...
T Consensus        16 ~~~v~~g~~VlDIGtGsG~l~i~la~~~~-~~~V~AvDi~~~al~~A~~N~~~~   68 (230)
T 3lec_A           16 ANYVPKGARLLDVGSDHAYLPIFLLQMGY-CDFAIAGEVVNGPYQSALKNVSEH   68 (230)
T ss_dssp             HTTSCTTEEEEEETCSTTHHHHHHHHTTC-EEEEEEEESSHHHHHHHHHHHHHT
T ss_pred             HHhCCCCCEEEEECCchHHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHc
Confidence            34455678999999999999999999884 346899999999998888776544

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13

Probab=93.40  E-value=0.15  Score=49.33  Aligned_cols=79  Identities=22%  Similarity=0.225  Sum_probs=53.9

Q ss_pred             CCCcccccCCCCChhHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHhhhc-C--CCCCccccccccccChhhHHHhhhcc
Q 008149          442 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESS-G--QTGELVQIEDIQALTTKKFESLIHKL  517 (576)
Q Consensus       442 ~~l~VLsLFSGiGG~slGL~~a-Gi~~k~vvavEid~~a~~t~k~~~~~t-n--~~g~l~~~~DI~~lt~~~Ie~l~~~~  517 (576)
                      .+.+|||+.||.|.+...+.+. |-. ..|+++|+++...+..+.+.... +  .....+..+|+.++..        ..
T Consensus        99 ~~~~vLdiG~G~G~~~~~l~~~~~~~-~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~~~~--------~~  169 (280)
T 1i9g_A           99 PGARVLEAGAGSGALTLSLLRAVGPA-GQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSEL--------PD  169 (280)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHHCTT-SEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCCC--------CT
T ss_pred             CCCEEEEEcccccHHHHHHHHHhCCC-CEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHhcCC--------CC
Confidence            4678999999999999988874 311 24789999999888877765432 1  1122345677766531        12


Q ss_pred             CCccEEEecCCC
Q 008149          518 GSIDFVICQNSV  529 (576)
Q Consensus       518 g~~DLVIGGpPC  529 (576)
                      +.+|+|+...|.
T Consensus       170 ~~~D~v~~~~~~  181 (280)
T 1i9g_A          170 GSVDRAVLDMLA  181 (280)
T ss_dssp             TCEEEEEEESSC
T ss_pred             CceeEEEECCcC
Confidence            479999987663

>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=93.39  E-value=0.081  Score=50.13  Aligned_cols=75  Identities=17%  Similarity=0.138  Sum_probs=51.8

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 008149          442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  521 (576)
Q Consensus       442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~D  521 (576)
                      .+.+|||+-||.|.+...|.+.+.  ..|+++|+++...+..+.+....+ ....+..+|+.++..    .+  .-+.||
T Consensus        60 ~~~~vLDiGcGtG~~~~~l~~~~~--~~v~gvD~s~~~l~~a~~~~~~~~-~~v~~~~~d~~~~~~----~~--~~~~fD  130 (236)
T 1zx0_A           60 KGGRVLEVGFGMAIAASKVQEAPI--DEHWIIECNDGVFQRLRDWAPRQT-HKVIPLKGLWEDVAP----TL--PDGHFD  130 (236)
T ss_dssp             TCEEEEEECCTTSHHHHHHHTSCE--EEEEEEECCHHHHHHHHHHGGGCS-SEEEEEESCHHHHGG----GS--CTTCEE
T ss_pred             CCCeEEEEeccCCHHHHHHHhcCC--CeEEEEcCCHHHHHHHHHHHHhcC-CCeEEEecCHHHhhc----cc--CCCceE
Confidence            467899999999999999977765  358899999999888877654321 122234566654311    00  115799


Q ss_pred             EEEe
Q 008149          522 FVIC  525 (576)
Q Consensus       522 LVIG  525 (576)
                      +|+.
T Consensus       131 ~V~~  134 (236)
T 1zx0_A          131 GILY  134 (236)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            9997

>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A

Probab=93.37  E-value=0.12  Score=38.99  Aligned_cols=37  Identities=22%  Similarity=0.359  Sum_probs=29.0

Q ss_pred             hHHHHHHHhcCCCH-HHHHHHHHHhCCCCChhhhhHhHhh
Q 008149           89 MEITLQLLEMGFSE-NQVSLAIEKFGSKTPISELADKIFS  127 (576)
Q Consensus        89 ~~k~~~L~~MGFse-eEas~AI~r~G~da~i~eLvD~I~A  127 (576)
                      .+++..|++|||++ +.+..|+..++-|  ++--||.++.
T Consensus         8 ~~~i~~L~~MGF~d~~~~~~AL~~~~gn--v~~Ave~L~~   45 (46)
T 2bwb_A            8 EHQLRQLNDMGFFDFDRNVAALRRSGGS--VQGALDSLLN   45 (46)
T ss_dssp             HHHHHHHHHTTCCCHHHHHHHHHHHTTC--HHHHHHHHHC
T ss_pred             HHHHHHHHHcCCCcHHHHHHHHHHhCCC--HHHHHHHHHc
Confidence            36888999999975 5569999999976  6666777764

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*

Probab=93.35  E-value=0.11  Score=51.14  Aligned_cols=71  Identities=15%  Similarity=0.188  Sum_probs=52.1

Q ss_pred             CCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCC---CCCccccccccccChhhHHHhhhccCC
Q 008149          443 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQ---TGELVQIEDIQALTTKKFESLIHKLGS  519 (576)
Q Consensus       443 ~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~---~g~l~~~~DI~~lt~~~Ie~l~~~~g~  519 (576)
                      +-+||||-||.|.+...|.+.|.+   |+++|+++......+......+.   ....++.+|+.++..         .+.
T Consensus        83 ~~~vLDlGcG~G~~~~~l~~~~~~---v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~---------~~~  150 (299)
T 3g2m_A           83 SGPVLELAAGMGRLTFPFLDLGWE---VTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAFAL---------DKR  150 (299)
T ss_dssp             CSCEEEETCTTTTTHHHHHTTTCC---EEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTBCCC---------SCC
T ss_pred             CCcEEEEeccCCHHHHHHHHcCCe---EEEEECCHHHHHHHHHHHhhcccccccceEEEeCchhcCCc---------CCC
Confidence            348999999999999999999864   68999999998888776543210   122356788877642         257


Q ss_pred             ccEEEe
Q 008149          520 IDFVIC  525 (576)
Q Consensus       520 ~DLVIG  525 (576)
                      ||+|+.
T Consensus       151 fD~v~~  156 (299)
T 3g2m_A          151 FGTVVI  156 (299)
T ss_dssp             EEEEEE
T ss_pred             cCEEEE
Confidence            898874

>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}

Probab=93.33  E-value=0.17  Score=51.45  Aligned_cols=76  Identities=17%  Similarity=0.163  Sum_probs=54.8

Q ss_pred             CCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCccE
Q 008149          443 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDF  522 (576)
Q Consensus       443 ~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~DL  522 (576)
                      +-+||||-||.|.+...+.+.|-.. .|.++|+++.+....+.+....+.. ..+..+|+.+..          .+.||+
T Consensus       197 ~~~VLDlGcG~G~~~~~la~~~~~~-~v~~vD~s~~~l~~a~~~~~~~~~~-~~~~~~d~~~~~----------~~~fD~  264 (343)
T 2pjd_A          197 KGKVLDVGCGAGVLSVAFARHSPKI-RLTLCDVSAPAVEASRATLAANGVE-GEVFASNVFSEV----------KGRFDM  264 (343)
T ss_dssp             CSBCCBTTCTTSHHHHHHHHHCTTC-BCEEEESBHHHHHHHHHHHHHTTCC-CEEEECSTTTTC----------CSCEEE
T ss_pred             CCeEEEecCccCHHHHHHHHHCCCC-EEEEEECCHHHHHHHHHHHHHhCCC-CEEEEccccccc----------cCCeeE
Confidence            3589999999999999998887432 4789999999888887776543322 223455654321          257999


Q ss_pred             EEecCCCC
Q 008149          523 VICQNSVP  530 (576)
Q Consensus       523 VIGGpPCQ  530 (576)
                      |+..+|..
T Consensus       265 Iv~~~~~~  272 (343)
T 2pjd_A          265 IISNPPFH  272 (343)
T ss_dssp             EEECCCCC
T ss_pred             EEECCCcc
Confidence            99988865

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}

Probab=93.33  E-value=0.16  Score=46.84  Aligned_cols=73  Identities=22%  Similarity=0.145  Sum_probs=54.6

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 008149          442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  521 (576)
Q Consensus       442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~D  521 (576)
                      .+.+|||+-||.|.+...+.+.|.+   ++++|+++......+....    ....+..+|+.++...         +.||
T Consensus        45 ~~~~vLDiGcG~G~~~~~l~~~~~~---v~~vD~s~~~~~~a~~~~~----~~~~~~~~d~~~~~~~---------~~fD  108 (220)
T 3hnr_A           45 SFGNVLEFGVGTGNLTNKLLLAGRT---VYGIEPSREMRMIAKEKLP----KEFSITEGDFLSFEVP---------TSID  108 (220)
T ss_dssp             CCSEEEEECCTTSHHHHHHHHTTCE---EEEECSCHHHHHHHHHHSC----TTCCEESCCSSSCCCC---------SCCS
T ss_pred             CCCeEEEeCCCCCHHHHHHHhCCCe---EEEEeCCHHHHHHHHHhCC----CceEEEeCChhhcCCC---------CCeE
Confidence            4678999999999999999998864   6899999998877766432    1233566788776421         5799


Q ss_pred             EEEecCCCC
Q 008149          522 FVICQNSVP  530 (576)
Q Consensus       522 LVIGGpPCQ  530 (576)
                      +|+......
T Consensus       109 ~v~~~~~l~  117 (220)
T 3hnr_A          109 TIVSTYAFH  117 (220)
T ss_dssp             EEEEESCGG
T ss_pred             EEEECcchh
Confidence            999775443

>1vek_A UBP14, ubiquitin-specific protease 14, putative; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1

Probab=93.30  E-value=0.091  Score=44.42  Aligned_cols=40  Identities=28%  Similarity=0.304  Sum_probs=34.7

Q ss_pred             hHHHHHHHhcCCCHHHHHHHHHHhCCCCChhhhhHhHhhcc
Q 008149           89 MEITLQLLEMGFSENQVSLAIEKFGSKTPISELADKIFSGQ  129 (576)
Q Consensus        89 ~~k~~~L~~MGFseeEas~AI~r~G~da~i~eLvD~I~Aaq  129 (576)
                      .+++..|+.|||+++.|..|+-..|.. .++.=++.|+.-+
T Consensus        30 e~~v~~L~~MGF~~~~a~~AL~~t~n~-n~e~A~ewL~~h~   69 (84)
T 1vek_A           30 EEIVAQLVSMGFSQLHCQKAAINTSNA-GVEEAMNWLLSHM   69 (84)
T ss_dssp             HHHHHHHHHHTCCHHHHHHHHHHTTTC-CHHHHHHHHHHHT
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHcCC-CHHHHHHHHHhCC
Confidence            457789999999999999999999864 6888899999865

>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17

Probab=93.28  E-value=0.078  Score=52.65  Aligned_cols=80  Identities=16%  Similarity=0.172  Sum_probs=55.5

Q ss_pred             CCCCcccccCCCCChhHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHhhhc----CCCCCccccccccccChhhHHHhhh
Q 008149          441 PGGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESS----GQTGELVQIEDIQALTTKKFESLIH  515 (576)
Q Consensus       441 ~~~l~VLsLFSGiGG~slGL~~a-Gi~~k~vvavEid~~a~~t~k~~~~~t----n~~g~l~~~~DI~~lt~~~Ie~l~~  515 (576)
                      +++.+||+|.||.|++...+.+. |.  .-|.+||+|+...+..+.++...    +.+...++.+|..+.    +.   .
T Consensus        74 ~~~~~VLdiG~G~G~~~~~l~~~~~~--~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~----l~---~  144 (275)
T 1iy9_A           74 PNPEHVLVVGGGDGGVIREILKHPSV--KKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMH----IA---K  144 (275)
T ss_dssp             SSCCEEEEESCTTCHHHHHHTTCTTC--SEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHH----HH---T
T ss_pred             CCCCEEEEECCchHHHHHHHHhCCCC--ceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHH----Hh---h
Confidence            45689999999999999888766 43  45889999999999988876431    112223455665432    11   1


Q ss_pred             ccCCccEEEecCCC
Q 008149          516 KLGSIDFVICQNSV  529 (576)
Q Consensus       516 ~~g~~DLVIGGpPC  529 (576)
                      ..+.+|+|+..+|.
T Consensus       145 ~~~~fD~Ii~d~~~  158 (275)
T 1iy9_A          145 SENQYDVIMVDSTE  158 (275)
T ss_dssp             CCSCEEEEEESCSS
T ss_pred             CCCCeeEEEECCCC
Confidence            12579999997765

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A

Probab=93.25  E-value=0.17  Score=47.90  Aligned_cols=77  Identities=13%  Similarity=0.066  Sum_probs=50.1

Q ss_pred             CCCcccccCCCCChhHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 008149          442 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI  520 (576)
Q Consensus       442 ~~l~VLsLFSGiGG~slGL~~a-Gi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~  520 (576)
                      .+.+|||+-||.|.+...|.+. | . ..|+++|+++.+.+..+.+....  ....++.+|+.+...     .....+.|
T Consensus        74 ~~~~VLDlGcG~G~~~~~la~~~~-~-~~v~gvD~s~~~~~~a~~~~~~~--~~v~~~~~d~~~~~~-----~~~~~~~~  144 (230)
T 1fbn_A           74 RDSKILYLGASAGTTPSHVADIAD-K-GIVYAIEYAPRIMRELLDACAER--ENIIPILGDANKPQE-----YANIVEKV  144 (230)
T ss_dssp             TTCEEEEESCCSSHHHHHHHHHTT-T-SEEEEEESCHHHHHHHHHHTTTC--TTEEEEECCTTCGGG-----GTTTSCCE
T ss_pred             CCCEEEEEcccCCHHHHHHHHHcC-C-cEEEEEECCHHHHHHHHHHhhcC--CCeEEEECCCCCccc-----ccccCccE
Confidence            4678999999999999888765 5 2 35889999999887776653221  222344577765211     00001579


Q ss_pred             cEEEecC
Q 008149          521 DFVICQN  527 (576)
Q Consensus       521 DLVIGGp  527 (576)
                      |+|+...
T Consensus       145 D~v~~~~  151 (230)
T 1fbn_A          145 DVIYEDV  151 (230)
T ss_dssp             EEEEECC
T ss_pred             EEEEEec
Confidence            9999443

>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A

Probab=93.22  E-value=0.11  Score=39.14  Aligned_cols=38  Identities=21%  Similarity=0.129  Sum_probs=31.5

Q ss_pred             hhhhhHHHhcCCCC-hHHHHHHHHHhCCCCcHHHHHHHHHH
Q 008149           16 HIEKRASLLMMNFS-VNEVDFALDKLGKDAPVYELVDFITA   55 (576)
Q Consensus        16 ~s~~r~~li~MGFs-~e~V~kAIqe~Ge~~~~~~Ile~Ll~   55 (576)
                      ..+...+|.+|||+ .+.+.+|++..+. | ++.=+|+|++
T Consensus         7 ~~~~i~~L~~MGF~d~~~~~~AL~~~~g-n-v~~Ave~L~~   45 (46)
T 2bwb_A            7 YEHQLRQLNDMGFFDFDRNVAALRRSGG-S-VQGALDSLLN   45 (46)
T ss_dssp             THHHHHHHHHTTCCCHHHHHHHHHHHTT-C-HHHHHHHHHC
T ss_pred             HHHHHHHHHHcCCCcHHHHHHHHHHhCC-C-HHHHHHHHHc
Confidence            34577999999996 6778999999875 4 8888999984

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}

Probab=93.21  E-value=0.072  Score=49.70  Aligned_cols=75  Identities=15%  Similarity=0.143  Sum_probs=52.7

Q ss_pred             ccccccCCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHh
Q 008149          434 SVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESL  513 (576)
Q Consensus       434 svLK~~f~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l  513 (576)
                      ..|+.+.+.+.+|||+-||.|.+...|.+.|.   .+.++|+++......+....     ...+..+|+.++..      
T Consensus        32 ~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~---~v~~~D~s~~~~~~a~~~~~-----~~~~~~~d~~~~~~------   97 (239)
T 3bxo_A           32 DLVRSRTPEASSLLDVACGTGTHLEHFTKEFG---DTAGLELSEDMLTHARKRLP-----DATLHQGDMRDFRL------   97 (239)
T ss_dssp             HHHHHHCTTCCEEEEETCTTSHHHHHHHHHHS---EEEEEESCHHHHHHHHHHCT-----TCEEEECCTTTCCC------
T ss_pred             HHHHHhcCCCCeEEEecccCCHHHHHHHHhCC---cEEEEeCCHHHHHHHHHhCC-----CCEEEECCHHHccc------
Confidence            33444445678999999999999999988875   37889999998887765431     22345667765532      


Q ss_pred             hhccCCccEEEe
Q 008149          514 IHKLGSIDFVIC  525 (576)
Q Consensus       514 ~~~~g~~DLVIG  525 (576)
                         .+.+|+|+.
T Consensus        98 ---~~~~D~v~~  106 (239)
T 3bxo_A           98 ---GRKFSAVVS  106 (239)
T ss_dssp             ---SSCEEEEEE
T ss_pred             ---CCCCcEEEE
Confidence               146788873

>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*

Probab=93.15  E-value=0.14  Score=52.29  Aligned_cols=76  Identities=17%  Similarity=0.157  Sum_probs=52.6

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCC-CccccccccccChhhHHHhhhccCCc
Q 008149          442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGSI  520 (576)
Q Consensus       442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g-~l~~~~DI~~lt~~~Ie~l~~~~g~~  520 (576)
                      .+.+|||+-||.|.++..+.++|.  .-|+++|+++ .....+......+... ..++.+|+.++...        .+.+
T Consensus        66 ~~~~VLDvGcG~G~~~~~la~~g~--~~v~gvD~s~-~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~--------~~~f  134 (349)
T 3q7e_A           66 KDKVVLDVGSGTGILCMFAAKAGA--RKVIGIECSS-ISDYAVKIVKANKLDHVVTIIKGKVEEVELP--------VEKV  134 (349)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHTTC--SEEEEEECST-HHHHHHHHHHHTTCTTTEEEEESCTTTCCCS--------SSCE
T ss_pred             CCCEEEEEeccchHHHHHHHHCCC--CEEEEECcHH-HHHHHHHHHHHcCCCCcEEEEECcHHHccCC--------CCce
Confidence            357899999999999999999986  3588999996 4444444443332222 23567888776321        2579


Q ss_pred             cEEEecCC
Q 008149          521 DFVICQNS  528 (576)
Q Consensus       521 DLVIGGpP  528 (576)
                      |+|+.-++
T Consensus       135 D~Iis~~~  142 (349)
T 3q7e_A          135 DIIISEWM  142 (349)
T ss_dssp             EEEEECCC
T ss_pred             EEEEEccc
Confidence            99997543

>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41

Probab=93.12  E-value=0.11  Score=49.97  Aligned_cols=73  Identities=15%  Similarity=0.189  Sum_probs=53.3

Q ss_pred             cCCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccC
Q 008149          439 MFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLG  518 (576)
Q Consensus       439 ~f~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g  518 (576)
                      +.+.+.+|||+-||.|.+...|.+.|.+   ++++|+++...+..+....     .. +...|+.++..        ..+
T Consensus        51 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~---v~gvD~s~~~l~~a~~~~~-----~~-~~~~d~~~~~~--------~~~  113 (260)
T 2avn_A           51 YLKNPCRVLDLGGGTGKWSLFLQERGFE---VVLVDPSKEMLEVAREKGV-----KN-VVEAKAEDLPF--------PSG  113 (260)
T ss_dssp             HCCSCCEEEEETCTTCHHHHHHHTTTCE---EEEEESCHHHHHHHHHHTC-----SC-EEECCTTSCCS--------CTT
T ss_pred             hcCCCCeEEEeCCCcCHHHHHHHHcCCe---EEEEeCCHHHHHHHHhhcC-----CC-EEECcHHHCCC--------CCC
Confidence            3345689999999999999999988863   7889999998877765421     12 56678776542        125


Q ss_pred             CccEEEecCC
Q 008149          519 SIDFVICQNS  528 (576)
Q Consensus       519 ~~DLVIGGpP  528 (576)
                      .||+|+....
T Consensus       114 ~fD~v~~~~~  123 (260)
T 2avn_A          114 AFEAVLALGD  123 (260)
T ss_dssp             CEEEEEECSS
T ss_pred             CEEEEEEcch
Confidence            7999996543

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}

Probab=93.12  E-value=0.12  Score=48.75  Aligned_cols=85  Identities=16%  Similarity=0.139  Sum_probs=57.0

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCC-CccccccccccChhhHHHhhhccCCc
Q 008149          442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGSI  520 (576)
Q Consensus       442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g-~l~~~~DI~~lt~~~Ie~l~~~~g~~  520 (576)
                      .+.+|||+-||.|++...+.+.. +-..|+++|+++...+..+.++...+... ..+..+|+.+.-    .... ..+.|
T Consensus        54 ~~~~vLdiG~G~G~~~~~la~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----~~~~-~~~~f  127 (233)
T 2gpy_A           54 APARILEIGTAIGYSAIRMAQAL-PEATIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLG----EKLE-LYPLF  127 (233)
T ss_dssp             CCSEEEEECCTTSHHHHHHHHHC-TTCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGSH----HHHT-TSCCE
T ss_pred             CCCEEEEecCCCcHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHH----Hhcc-cCCCc
Confidence            35689999999999999888762 11247899999999888888775443221 223456665431    1110 12579


Q ss_pred             cEEEecCCCCCc
Q 008149          521 DFVICQNSVPQI  532 (576)
Q Consensus       521 DLVIGGpPCQ~F  532 (576)
                      |+|+...||...
T Consensus       128 D~I~~~~~~~~~  139 (233)
T 2gpy_A          128 DVLFIDAAKGQY  139 (233)
T ss_dssp             EEEEEEGGGSCH
T ss_pred             cEEEECCCHHHH
Confidence            999998888643

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*

Probab=93.05  E-value=0.13  Score=48.62  Aligned_cols=75  Identities=13%  Similarity=0.213  Sum_probs=52.3

Q ss_pred             CCCCcccccCCCCChhHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCC
Q 008149          441 PGGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGS  519 (576)
Q Consensus       441 ~~~l~VLsLFSGiGG~slGL~~a-Gi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~  519 (576)
                      +.+.+|||+-||.|.+...+.+. |.   .|+++|+++......+......  ....+..+|+.++...        -+.
T Consensus        54 ~~~~~vLdiG~G~G~~~~~l~~~~~~---~v~~vD~s~~~~~~a~~~~~~~--~~~~~~~~d~~~~~~~--------~~~  120 (266)
T 3ujc_A           54 NENSKVLDIGSGLGGGCMYINEKYGA---HTHGIDICSNIVNMANERVSGN--NKIIFEANDILTKEFP--------ENN  120 (266)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHHCC---EEEEEESCHHHHHHHHHTCCSC--TTEEEEECCTTTCCCC--------TTC
T ss_pred             CCCCEEEEECCCCCHHHHHHHHHcCC---EEEEEeCCHHHHHHHHHHhhcC--CCeEEEECccccCCCC--------CCc
Confidence            34679999999999999998876 65   3789999999887776543211  2223456777765311        257


Q ss_pred             ccEEEecCC
Q 008149          520 IDFVICQNS  528 (576)
Q Consensus       520 ~DLVIGGpP  528 (576)
                      ||+|+....
T Consensus       121 fD~v~~~~~  129 (266)
T 3ujc_A          121 FDLIYSRDA  129 (266)
T ss_dssp             EEEEEEESC
T ss_pred             EEEEeHHHH
Confidence            899987543

>1dv0_A DNA repair protein HHR23A; helical bundle, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 1f4i_A

Probab=93.01  E-value=0.041  Score=41.64  Aligned_cols=36  Identities=17%  Similarity=0.054  Sum_probs=31.1

Q ss_pred             hhhHHHhcCCCChHHHHHHHHHhCCCCcHHHHHHHHHH
Q 008149           18 EKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITA   55 (576)
Q Consensus        18 ~~r~~li~MGFs~e~V~kAIqe~Ge~~~~~~Ile~Ll~   55 (576)
                      +....|++|||++..|.+|+...| .| .+.=+++|++
T Consensus         6 eaI~rL~~mGF~~~~a~~Al~a~~-~n-~e~A~~~Lf~   41 (47)
T 1dv0_A            6 EAIERLKALGFPESLVIQAYFACE-KN-ENLAANFLLS   41 (47)
T ss_dssp             HHHTTTTTTTCCHHHHHHHHTTTT-SC-HHHHHHHTTS
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHcC-CC-HHHHHHHHHh
Confidence            467889999999999999999999 45 7788888884

>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}

Probab=92.96  E-value=0.19  Score=49.97  Aligned_cols=53  Identities=11%  Similarity=-0.104  Sum_probs=43.2

Q ss_pred             cccCCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhc
Q 008149          437 KSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESS  490 (576)
Q Consensus       437 K~~f~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~t  490 (576)
                      .++.+.+-+|+|+=||.|-+.+.+.+.|- ...|+|+|+++.+...-+.+-...
T Consensus        16 ~~~v~~g~~VlDIGtGsG~l~i~la~~~~-~~~V~avDi~~~al~~A~~N~~~~   68 (244)
T 3gnl_A           16 ASYITKNERIADIGSDHAYLPCFAVKNQT-ASFAIAGEVVDGPFQSAQKQVRSS   68 (244)
T ss_dssp             HTTCCSSEEEEEETCSTTHHHHHHHHTTS-EEEEEEEESSHHHHHHHHHHHHHT
T ss_pred             HHhCCCCCEEEEECCccHHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHc
Confidence            34455678999999999999999999884 346899999999998888776544

>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A

Probab=92.93  E-value=0.17  Score=51.71  Aligned_cols=76  Identities=14%  Similarity=0.142  Sum_probs=51.8

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCC-CCCccccccccccChhhHHHhhhccCCc
Q 008149          442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQ-TGELVQIEDIQALTTKKFESLIHKLGSI  520 (576)
Q Consensus       442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~-~g~l~~~~DI~~lt~~~Ie~l~~~~g~~  520 (576)
                      .+.+|||+-||.|.++..+.++|.  ..|+++|+++.+ ...+......+. ....++.+|+.++..         .+.+
T Consensus        50 ~~~~VLDiGcGtG~ls~~la~~g~--~~V~~vD~s~~~-~~a~~~~~~~~l~~~v~~~~~d~~~~~~---------~~~~  117 (348)
T 2y1w_A           50 KDKIVLDVGCGSGILSFFAAQAGA--RKIYAVEASTMA-QHAEVLVKSNNLTDRIVVIPGKVEEVSL---------PEQV  117 (348)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTTC--SEEEEEECSTHH-HHHHHHHHHTTCTTTEEEEESCTTTCCC---------SSCE
T ss_pred             CcCEEEEcCCCccHHHHHHHhCCC--CEEEEECCHHHH-HHHHHHHHHcCCCCcEEEEEcchhhCCC---------CCce
Confidence            357899999999999999998886  358899999743 444444332222 122345677776542         1469


Q ss_pred             cEEEecCCC
Q 008149          521 DFVICQNSV  529 (576)
Q Consensus       521 DLVIGGpPC  529 (576)
                      |+|+...+.
T Consensus       118 D~Ivs~~~~  126 (348)
T 2y1w_A          118 DIIISEPMG  126 (348)
T ss_dssp             EEEEECCCB
T ss_pred             eEEEEeCch
Confidence            999987663

>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}

Probab=92.89  E-value=0.066  Score=58.86  Aligned_cols=84  Identities=12%  Similarity=0.085  Sum_probs=52.7

Q ss_pred             CCCcccccCCCCChhHHHHHHc-C-CceeeEEEeeCCHHHHHHHHHHhhhcCCC--CCccccccccccChhhHHHhhhcc
Q 008149          442 GGLTMLSVFSGIGGAEVTLHRL-G-IKLKGVISIETSETNRRILKRWWESSGQT--GELVQIEDIQALTTKKFESLIHKL  517 (576)
Q Consensus       442 ~~l~VLsLFSGiGG~slGL~~a-G-i~~k~vvavEid~~a~~t~k~~~~~tn~~--g~l~~~~DI~~lt~~~Ie~l~~~~  517 (576)
                      .+.+|+|.+||.|||-+.+.+. . ..-..++++|+++.+.++.+.+..-++..  ...+..+|.-..+-..     ...
T Consensus       221 ~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~~~~I~~gDtL~~d~p~-----~~~  295 (542)
T 3lkd_A          221 QGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGVPIENQFLHNADTLDEDWPT-----QEP  295 (542)
T ss_dssp             TTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCTTTSCSCC-----SSC
T ss_pred             CCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCCCcCccceEecceecccccc-----ccc
Confidence            4689999999999998776543 1 01135899999999988887654322211  1123445543221000     112


Q ss_pred             CCccEEEecCCCC
Q 008149          518 GSIDFVICQNSVP  530 (576)
Q Consensus       518 g~~DLVIGGpPCQ  530 (576)
                      +.||+|+|-||-.
T Consensus       296 ~~fD~IvaNPPf~  308 (542)
T 3lkd_A          296 TNFDGVLMNPPYS  308 (542)
T ss_dssp             CCBSEEEECCCTT
T ss_pred             ccccEEEecCCcC
Confidence            5799999999976

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}

Probab=92.89  E-value=0.19  Score=46.95  Aligned_cols=74  Identities=22%  Similarity=0.205  Sum_probs=51.8

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 008149          442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  521 (576)
Q Consensus       442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~D  521 (576)
                      .+.+|||+-||.|.+...+.+.|..  .++++|+++......+.....   ....+..+|+.++..        ..+.+|
T Consensus        43 ~~~~vLdiG~G~G~~~~~l~~~~~~--~v~~vD~s~~~~~~a~~~~~~---~~~~~~~~d~~~~~~--------~~~~fD  109 (243)
T 3bkw_A           43 GGLRIVDLGCGFGWFCRWAHEHGAS--YVLGLDLSEKMLARARAAGPD---TGITYERADLDKLHL--------PQDSFD  109 (243)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHTTCS--EEEEEESCHHHHHHHHHTSCS---SSEEEEECCGGGCCC--------CTTCEE
T ss_pred             CCCEEEEEcCcCCHHHHHHHHCCCC--eEEEEcCCHHHHHHHHHhccc---CCceEEEcChhhccC--------CCCCce
Confidence            4678999999999999999998862  478999999988777654321   122245567665531        124688


Q ss_pred             EEEecCC
Q 008149          522 FVICQNS  528 (576)
Q Consensus       522 LVIGGpP  528 (576)
                      +|+....
T Consensus       110 ~v~~~~~  116 (243)
T 3bkw_A          110 LAYSSLA  116 (243)
T ss_dssp             EEEEESC
T ss_pred             EEEEecc
Confidence            8887554

>2d9s_A CBL E3 ubiquitin protein ligase; UBA domain, dimer, protein binding, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=92.89  E-value=0.13  Score=40.27  Aligned_cols=39  Identities=10%  Similarity=0.075  Sum_probs=31.1

Q ss_pred             hhhhhHHHhcCCCChHHHHHHHHHhCCCCcHHHHHHHHHHh
Q 008149           16 HIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAA   56 (576)
Q Consensus        16 ~s~~r~~li~MGFs~e~V~kAIqe~Ge~~~~~~Ile~Ll~~   56 (576)
                      .+....+|++|||+.+.|.+|++.-.. | ++.-..+|+..
T Consensus         9 ~e~~I~~L~~lGF~r~~ai~AL~~a~n-n-ve~Aa~iL~ef   47 (53)
T 2d9s_A            9 LSSEIERLMSQGYSYQDIQKALVIAHN-N-IEMAKNILREF   47 (53)
T ss_dssp             SHHHHHHHHHHTCCHHHHHHHHHHTTT-C-HHHHHHHHHHH
T ss_pred             hHHHHHHHHHcCCCHHHHHHHHHHhcC-C-HHHHHHHHHHh
Confidence            345689999999999999999999655 4 77766677654

>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}

Probab=92.84  E-value=0.19  Score=47.51  Aligned_cols=79  Identities=18%  Similarity=0.197  Sum_probs=49.2

Q ss_pred             CCCcccccCCCCChhHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 008149          442 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI  520 (576)
Q Consensus       442 ~~l~VLsLFSGiGG~slGL~~a-Gi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~  520 (576)
                      .+.+|||+.||.|++...|.+. |-. ..|+++|+++.+.......-...  ....+..+|+.+...  +.   ...+.|
T Consensus        77 ~~~~vLDlG~G~G~~~~~la~~~g~~-~~v~gvD~s~~~i~~~~~~a~~~--~~v~~~~~d~~~~~~--~~---~~~~~~  148 (233)
T 2ipx_A           77 PGAKVLYLGAASGTTVSHVSDIVGPD-GLVYAVEFSHRSGRDLINLAKKR--TNIIPVIEDARHPHK--YR---MLIAMV  148 (233)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHHCTT-CEEEEECCCHHHHHHHHHHHHHC--TTEEEECSCTTCGGG--GG---GGCCCE
T ss_pred             CCCEEEEEcccCCHHHHHHHHHhCCC-cEEEEEECCHHHHHHHHHHhhcc--CCeEEEEcccCChhh--hc---ccCCcE
Confidence            4678999999999999888765 311 24789999987544333322221  223345677765321  11   012579


Q ss_pred             cEEEecCC
Q 008149          521 DFVICQNS  528 (576)
Q Consensus       521 DLVIGGpP  528 (576)
                      |+|+..+|
T Consensus       149 D~V~~~~~  156 (233)
T 2ipx_A          149 DVIFADVA  156 (233)
T ss_dssp             EEEEECCC
T ss_pred             EEEEEcCC
Confidence            99998655

>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}

Probab=92.84  E-value=0.15  Score=46.83  Aligned_cols=77  Identities=23%  Similarity=0.160  Sum_probs=52.1

Q ss_pred             ccccCCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhh
Q 008149          436 LKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIH  515 (576)
Q Consensus       436 LK~~f~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~  515 (576)
                      |+.+.+.+.+|||+-||.|.+...+   |.  ..+.++|+++...+..+...     ....+..+|+.++..        
T Consensus        30 l~~~~~~~~~vLdiG~G~G~~~~~l---~~--~~v~~vD~s~~~~~~a~~~~-----~~~~~~~~d~~~~~~--------   91 (211)
T 2gs9_A           30 LKGLLPPGESLLEVGAGTGYWLRRL---PY--PQKVGVEPSEAMLAVGRRRA-----PEATWVRAWGEALPF--------   91 (211)
T ss_dssp             HHTTCCCCSEEEEETCTTCHHHHHC---CC--SEEEEECCCHHHHHHHHHHC-----TTSEEECCCTTSCCS--------
T ss_pred             HHHhcCCCCeEEEECCCCCHhHHhC---CC--CeEEEEeCCHHHHHHHHHhC-----CCcEEEEcccccCCC--------
Confidence            3444446789999999999988766   65  24789999999887776543     222345677766541        


Q ss_pred             ccCCccEEEecCCCC
Q 008149          516 KLGSIDFVICQNSVP  530 (576)
Q Consensus       516 ~~g~~DLVIGGpPCQ  530 (576)
                      ..+.+|+|+....-.
T Consensus        92 ~~~~fD~v~~~~~l~  106 (211)
T 2gs9_A           92 PGESFDVVLLFTTLE  106 (211)
T ss_dssp             CSSCEEEEEEESCTT
T ss_pred             CCCcEEEEEEcChhh
Confidence            124799999765433

>2d9s_A CBL E3 ubiquitin protein ligase; UBA domain, dimer, protein binding, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=92.81  E-value=0.087  Score=41.24  Aligned_cols=27  Identities=15%  Similarity=0.167  Sum_probs=25.0

Q ss_pred             hHHHHHHHhcCCCHHHHHHHHHHhCCC
Q 008149           89 MEITLQLLEMGFSENQVSLAIEKFGSK  115 (576)
Q Consensus        89 ~~k~~~L~~MGFseeEas~AI~r~G~d  115 (576)
                      +.++..|+.|||+.++|..|+..++.+
T Consensus        10 e~~I~~L~~lGF~r~~ai~AL~~a~nn   36 (53)
T 2d9s_A           10 SSEIERLMSQGYSYQDIQKALVIAHNN   36 (53)
T ss_dssp             HHHHHHHHHHTCCHHHHHHHHHHTTTC
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHhcCC
Confidence            357999999999999999999999988

>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*

Probab=92.77  E-value=0.17  Score=51.60  Aligned_cols=75  Identities=16%  Similarity=0.121  Sum_probs=51.8

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCC-CCCccccccccccChhhHHHhhhccCCc
Q 008149          442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQ-TGELVQIEDIQALTTKKFESLIHKLGSI  520 (576)
Q Consensus       442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~-~g~l~~~~DI~~lt~~~Ie~l~~~~g~~  520 (576)
                      .+.+|||+-||.|.+++.+.++|.  ..|+++|+++ .....+......+. ....++.+|+.++...        .+.+
T Consensus        64 ~~~~VLDiGcGtG~ls~~la~~g~--~~v~gvD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~--------~~~~  132 (340)
T 2fyt_A           64 KDKVVLDVGCGTGILSMFAAKAGA--KKVLGVDQSE-ILYQAMDIIRLNKLEDTITLIKGKIEEVHLP--------VEKV  132 (340)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTTC--SEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTSCCS--------CSCE
T ss_pred             CCCEEEEeeccCcHHHHHHHHcCC--CEEEEEChHH-HHHHHHHHHHHcCCCCcEEEEEeeHHHhcCC--------CCcE
Confidence            356899999999999999999985  3589999997 55555555443322 1223456787766321        1479


Q ss_pred             cEEEecC
Q 008149          521 DFVICQN  527 (576)
Q Consensus       521 DLVIGGp  527 (576)
                      |+|+...
T Consensus       133 D~Ivs~~  139 (340)
T 2fyt_A          133 DVIISEW  139 (340)
T ss_dssp             EEEEECC
T ss_pred             EEEEEcC
Confidence            9999653

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42

Probab=92.63  E-value=0.11  Score=49.05  Aligned_cols=74  Identities=16%  Similarity=0.066  Sum_probs=52.3

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 008149          442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  521 (576)
Q Consensus       442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~D  521 (576)
                      .+.+|||+-||.|.+...|...|.  ..|.++|+++......+......  ....+..+|+.++..        ..+.||
T Consensus        93 ~~~~vLDiG~G~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~--~~~~~~~~d~~~~~~--------~~~~fD  160 (254)
T 1xtp_A           93 GTSRALDCGAGIGRITKNLLTKLY--ATTDLLEPVKHMLEEAKRELAGM--PVGKFILASMETATL--------PPNTYD  160 (254)
T ss_dssp             CCSEEEEETCTTTHHHHHTHHHHC--SEEEEEESCHHHHHHHHHHTTTS--SEEEEEESCGGGCCC--------CSSCEE
T ss_pred             CCCEEEEECCCcCHHHHHHHHhhc--CEEEEEeCCHHHHHHHHHHhccC--CceEEEEccHHHCCC--------CCCCeE
Confidence            468999999999999999888874  35889999999988877654321  122245567766531        124789


Q ss_pred             EEEecC
Q 008149          522 FVICQN  527 (576)
Q Consensus       522 LVIGGp  527 (576)
                      +|+...
T Consensus       161 ~v~~~~  166 (254)
T 1xtp_A          161 LIVIQW  166 (254)
T ss_dssp             EEEEES
T ss_pred             EEEEcc
Confidence            998644

>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1

Probab=92.59  E-value=0.13  Score=45.47  Aligned_cols=40  Identities=15%  Similarity=0.362  Sum_probs=34.3

Q ss_pred             hhHHHHHHHhc-CCCHHHHHHHHHHhCCCCChhhhhHhHhhcc
Q 008149           88 TMEITLQLLEM-GFSENQVSLAIEKFGSKTPISELADKIFSGQ  129 (576)
Q Consensus        88 ~~~k~~~L~~M-GFseeEas~AI~r~G~da~i~eLvD~I~Aaq  129 (576)
                      ..+++..|++| ||++++|..||..|+-|  |++-+++|+-..
T Consensus        39 ~eekVk~L~EmtG~seeeAr~AL~~~ngD--l~~AI~~Lleg~   79 (104)
T 1wj7_A           39 FEEKVKQLIDITGKNQDECVIALHDCNGD--VNRAINVLLEGN   79 (104)
T ss_dssp             HHHHHHHHHHHTCCCHHHHHHHHHHHTSC--HHHHHHHHHTCS
T ss_pred             HHHHHHHHHHhhCCCHHHHHHHHHHcCCC--HHHHHHHHHhCC
Confidence            35789999999 99999999999999988  677778887654

>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...

Probab=92.55  E-value=0.14  Score=48.11  Aligned_cols=84  Identities=18%  Similarity=0.200  Sum_probs=55.9

Q ss_pred             CCCcccccCCCCChhHHHHHHc---CCceeeEEEeeCCHHHHHHHHHHhhhcCCCC-CccccccccccChhhHHHhhhc-
Q 008149          442 GGLTMLSVFSGIGGAEVTLHRL---GIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHK-  516 (576)
Q Consensus       442 ~~l~VLsLFSGiGG~slGL~~a---Gi~~k~vvavEid~~a~~t~k~~~~~tn~~g-~l~~~~DI~~lt~~~Ie~l~~~-  516 (576)
                      .+.+|||+.||.|+.++.+.++   |.   .|+++|+++...+..+.++...+... ..++.+|..++-    +.+... 
T Consensus        58 ~~~~vLdiG~G~G~~~~~la~~~~~~~---~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l----~~~~~~~  130 (221)
T 3u81_A           58 SPSLVLELGAYCGYSAVRMARLLQPGA---RLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLI----PQLKKKY  130 (221)
T ss_dssp             CCSEEEEECCTTSHHHHHHHTTSCTTC---EEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHG----GGTTTTS
T ss_pred             CCCEEEEECCCCCHHHHHHHHhCCCCC---EEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHH----HHHHHhc
Confidence            3568999999999999988774   33   47899999999988888776543221 224456654421    111111 


Q ss_pred             -cCCccEEEecCCCCCc
Q 008149          517 -LGSIDFVICQNSVPQI  532 (576)
Q Consensus       517 -~g~~DLVIGGpPCQ~F  532 (576)
                       .+.||+|+-..++..+
T Consensus       131 ~~~~fD~V~~d~~~~~~  147 (221)
T 3u81_A          131 DVDTLDMVFLDHWKDRY  147 (221)
T ss_dssp             CCCCCSEEEECSCGGGH
T ss_pred             CCCceEEEEEcCCcccc
Confidence             1579999977666554

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}

Probab=92.54  E-value=0.27  Score=44.79  Aligned_cols=75  Identities=15%  Similarity=0.189  Sum_probs=53.8

Q ss_pred             cccccCCCCChhHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHhhhcCCC-CCccccccccccChhhHHHhhhccCCccE
Q 008149          445 TMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQT-GELVQIEDIQALTTKKFESLIHKLGSIDF  522 (576)
Q Consensus       445 ~VLsLFSGiGG~slGL~~a-Gi~~k~vvavEid~~a~~t~k~~~~~tn~~-g~l~~~~DI~~lt~~~Ie~l~~~~g~~DL  522 (576)
                      +|||+-||.|.+...+.+. |   ..++++|+++......+......+.. ...+..+|+.++.-        ..+.+|+
T Consensus        46 ~vLdiG~G~G~~~~~l~~~~~---~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~--------~~~~~D~  114 (219)
T 3dlc_A           46 TCIDIGSGPGALSIALAKQSD---FSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNIPI--------EDNYADL  114 (219)
T ss_dssp             EEEEETCTTSHHHHHHHHHSE---EEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBTTBCSS--------CTTCEEE
T ss_pred             EEEEECCCCCHHHHHHHHcCC---CeEEEEECCHHHHHHHHHHHHhccccCceEEEEcCHHHCCC--------CcccccE
Confidence            8999999999999998887 4   34789999999888887765543322 22345678776541        1257999


Q ss_pred             EEecCCCC
Q 008149          523 VICQNSVP  530 (576)
Q Consensus       523 VIGGpPCQ  530 (576)
                      |+......
T Consensus       115 v~~~~~l~  122 (219)
T 3dlc_A          115 IVSRGSVF  122 (219)
T ss_dssp             EEEESCGG
T ss_pred             EEECchHh
Confidence            99765443

>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*

Probab=92.44  E-value=0.22  Score=49.01  Aligned_cols=78  Identities=15%  Similarity=0.139  Sum_probs=52.8

Q ss_pred             CCCCCcccccCCCCChhHHHHHHcC-CceeeEEEeeCCHHHHHHHHHHhhhcCCCC-CccccccccccChhhHHHhhhcc
Q 008149          440 FPGGLTMLSVFSGIGGAEVTLHRLG-IKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKL  517 (576)
Q Consensus       440 f~~~l~VLsLFSGiGG~slGL~~aG-i~~k~vvavEid~~a~~t~k~~~~~tn~~g-~l~~~~DI~~lt~~~Ie~l~~~~  517 (576)
                      .+.+-+||||=||.|.+.+.|.+.. -+---|+++|+++......+......+... ..+..+|+.++..          
T Consensus        68 ~~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~~~----------  137 (261)
T 4gek_A           68 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAI----------  137 (261)
T ss_dssp             CCTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTCCC----------
T ss_pred             CCCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeecccccccc----------
Confidence            3457899999999999998887642 111137899999998777776554332221 2245688877642          


Q ss_pred             CCccEEEecC
Q 008149          518 GSIDFVICQN  527 (576)
Q Consensus       518 g~~DLVIGGp  527 (576)
                      +++|+|+...
T Consensus       138 ~~~d~v~~~~  147 (261)
T 4gek_A          138 ENASMVVLNF  147 (261)
T ss_dssp             CSEEEEEEES
T ss_pred             cccccceeee
Confidence            4688888654

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1

Probab=92.35  E-value=0.29  Score=45.66  Aligned_cols=85  Identities=11%  Similarity=0.108  Sum_probs=55.1

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCC-CCccccccccccChhhHHHhhhcc--C
Q 008149          442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQT-GELVQIEDIQALTTKKFESLIHKL--G  518 (576)
Q Consensus       442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~-g~l~~~~DI~~lt~~~Ie~l~~~~--g  518 (576)
                      .+.+|||+.||.|...+.+.++.-.-..|+++|+++......+.++...+.. ...++.+|+.+.    +..+....  +
T Consensus        69 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~----~~~~~~~~~~~  144 (229)
T 2avd_A           69 QAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALET----LDELLAAGEAG  144 (229)
T ss_dssp             TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHH----HHHHHHTTCTT
T ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHH----HHHHHhcCCCC
Confidence            3568999999999999988875110124789999999988888887654321 122345565432    12221111  5


Q ss_pred             CccEEEecCCCC
Q 008149          519 SIDFVICQNSVP  530 (576)
Q Consensus       519 ~~DLVIGGpPCQ  530 (576)
                      .||+|+..+|..
T Consensus       145 ~~D~v~~d~~~~  156 (229)
T 2avd_A          145 TFDVAVVDADKE  156 (229)
T ss_dssp             CEEEEEECSCST
T ss_pred             CccEEEECCCHH
Confidence            799999877644

>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1

Probab=92.33  E-value=0.16  Score=40.28  Aligned_cols=39  Identities=21%  Similarity=0.130  Sum_probs=32.7

Q ss_pred             hhhhhHHHhcCCCC-hHHHHHHHHHhCCCCcHHHHHHHHHHh
Q 008149           16 HIEKRASLLMMNFS-VNEVDFALDKLGKDAPVYELVDFITAA   56 (576)
Q Consensus        16 ~s~~r~~li~MGFs-~e~V~kAIqe~Ge~~~~~~Ile~Ll~~   56 (576)
                      .++...+|.+|||+ .+.+.+|++..+. | ++.-+|+|+..
T Consensus        17 ~~~qi~~L~~MGF~d~~~~~~AL~~~~g-n-ve~Ave~L~~~   56 (58)
T 1wr1_B           17 YEHQLRQLNDMGFFDFDRNVAALRRSGG-S-VQGALDSLLNG   56 (58)
T ss_dssp             THHHHHHHHHHTCCCHHHHHHHHHHHTS-C-HHHHHHHHHHT
T ss_pred             HHHHHHHHHHcCCCcHHHHHHHHHHhCC-C-HHHHHHHHHhC
Confidence            45578899999995 7789999999875 5 88999999963

>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11

Probab=92.26  E-value=0.12  Score=50.79  Aligned_cols=45  Identities=16%  Similarity=0.185  Sum_probs=37.8

Q ss_pred             CCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhh
Q 008149          441 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWE  488 (576)
Q Consensus       441 ~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~  488 (576)
                      +.+-.|||+|||.|...++..++|-+   ++++|+++.+..+-+..+.
T Consensus       211 ~~~~~vlD~f~GsGtt~~~a~~~gr~---~ig~e~~~~~~~~~~~r~~  255 (260)
T 1g60_A          211 NPNDLVLDCFMGSGTTAIVAKKLGRN---FIGCDMNAEYVNQANFVLN  255 (260)
T ss_dssp             CTTCEEEESSCTTCHHHHHHHHTTCE---EEEEESCHHHHHHHHHHHH
T ss_pred             CCCCEEEECCCCCCHHHHHHHHcCCe---EEEEeCCHHHHHHHHHHHH
Confidence            34567999999999999999999964   6789999998887776553

>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6

Probab=92.20  E-value=0.24  Score=50.09  Aligned_cols=76  Identities=18%  Similarity=0.196  Sum_probs=51.8

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCC-CccccccccccChhhHHHhhhccCCc
Q 008149          442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGSI  520 (576)
Q Consensus       442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g-~l~~~~DI~~lt~~~Ie~l~~~~g~~  520 (576)
                      .+.+|||+-||.|.+++.+.++|.  .-|+++|+++ .....+......+... ..++.+|+.++...        .+.+
T Consensus        38 ~~~~VLDiGcGtG~ls~~la~~g~--~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~--------~~~~  106 (328)
T 1g6q_1           38 KDKIVLDVGCGTGILSMFAAKHGA--KHVIGVDMSS-IIEMAKELVELNGFSDKITLLRGKLEDVHLP--------FPKV  106 (328)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTCC--SEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTSCCS--------SSCE
T ss_pred             CCCEEEEecCccHHHHHHHHHCCC--CEEEEEChHH-HHHHHHHHHHHcCCCCCEEEEECchhhccCC--------CCcc
Confidence            356899999999999999999886  3588999995 4445555443332222 22456777766421        1479


Q ss_pred             cEEEecCC
Q 008149          521 DFVICQNS  528 (576)
Q Consensus       521 DLVIGGpP  528 (576)
                      |+|+...+
T Consensus       107 D~Ivs~~~  114 (328)
T 1g6q_1          107 DIIISEWM  114 (328)
T ss_dssp             EEEEECCC
T ss_pred             cEEEEeCc
Confidence            99997654

>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1

Probab=92.16  E-value=0.19  Score=39.81  Aligned_cols=38  Identities=24%  Similarity=0.350  Sum_probs=30.6

Q ss_pred             hHHHHHHHhcCCC-HHHHHHHHHHhCCCCChhhhhHhHhhc
Q 008149           89 MEITLQLLEMGFS-ENQVSLAIEKFGSKTPISELADKIFSG  128 (576)
Q Consensus        89 ~~k~~~L~~MGFs-eeEas~AI~r~G~da~i~eLvD~I~Aa  128 (576)
                      .+++..|++|||+ ++.+..||..++-|  ++.-+|.++..
T Consensus        18 ~~qi~~L~~MGF~d~~~~~~AL~~~~gn--ve~Ave~L~~~   56 (58)
T 1wr1_B           18 EHQLRQLNDMGFFDFDRNVAALRRSGGS--VQGALDSLLNG   56 (58)
T ss_dssp             HHHHHHHHHHTCCCHHHHHHHHHHHTSC--HHHHHHHHHHT
T ss_pred             HHHHHHHHHcCCCcHHHHHHHHHHhCCC--HHHHHHHHHhC
Confidence            3688899999997 55669999999976  66778887754

>2juj_A E3 ubiquitin-protein ligase CBL; alpha helix, UBA domain, calcium, cytoplasm, metal- binding, phosphorylation, proto-oncogene, SH2 domain; NMR {Homo sapiens}

Probab=92.13  E-value=0.21  Score=39.39  Aligned_cols=39  Identities=10%  Similarity=0.088  Sum_probs=31.1

Q ss_pred             hhhhhHHHhcCCCChHHHHHHHHHhCCCCcHHHHHHHHHHh
Q 008149           16 HIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAA   56 (576)
Q Consensus        16 ~s~~r~~li~MGFs~e~V~kAIqe~Ge~~~~~~Ile~Ll~~   56 (576)
                      .++..+.|++|||+.+.|.+|+..-.. | ++.--+.|+.+
T Consensus         7 ~e~~Ia~L~smGfsr~da~~AL~ia~N-d-v~~AtNiLlEf   45 (56)
T 2juj_A            7 LSSEIENLMSQGYSYQDIQKALVIAQN-N-IEMAKNILREF   45 (56)
T ss_dssp             HHHHHHHHHTTTCCHHHHHHHHHHTTT-C-SHHHHHHHHHS
T ss_pred             ChHHHHHHHHcCCCHHHHHHHHHHhcc-c-HHHHHHHHHHH
Confidence            456789999999999999999998544 4 77766777754

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}

Probab=92.09  E-value=0.36  Score=44.03  Aligned_cols=74  Identities=20%  Similarity=0.122  Sum_probs=50.2

Q ss_pred             CCCcccccCCCCChhH-HHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 008149          442 GGLTMLSVFSGIGGAE-VTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI  520 (576)
Q Consensus       442 ~~l~VLsLFSGiGG~s-lGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~  520 (576)
                      .+.+|||+-||.|.+. ..+...|.+   ++++|+++.+.+..+......+ ....+...|+.++..        ..+.+
T Consensus        23 ~~~~vLDiGcG~G~~~~~~~~~~~~~---v~~vD~s~~~~~~a~~~~~~~~-~~~~~~~~d~~~~~~--------~~~~f   90 (209)
T 2p8j_A           23 LDKTVLDCGAGGDLPPLSIFVEDGYK---TYGIEISDLQLKKAENFSRENN-FKLNISKGDIRKLPF--------KDESM   90 (209)
T ss_dssp             SCSEEEEESCCSSSCTHHHHHHTTCE---EEEEECCHHHHHHHHHHHHHHT-CCCCEEECCTTSCCS--------CTTCE
T ss_pred             CCCEEEEECCCCCHHHHHHHHhCCCE---EEEEECCHHHHHHHHHHHHhcC-CceEEEECchhhCCC--------CCCce
Confidence            4678999999988873 445667763   7899999998888776654332 223345677776541        11468


Q ss_pred             cEEEecC
Q 008149          521 DFVICQN  527 (576)
Q Consensus       521 DLVIGGp  527 (576)
                      |+|+...
T Consensus        91 D~v~~~~   97 (209)
T 2p8j_A           91 SFVYSYG   97 (209)
T ss_dssp             EEEEECS
T ss_pred             eEEEEcC
Confidence            9998654

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}

Probab=92.07  E-value=0.28  Score=47.26  Aligned_cols=82  Identities=12%  Similarity=0.149  Sum_probs=56.1

Q ss_pred             CCCcccccCCCCChhHHHHHHc---CCceeeEEEeeCCHHHHHHHHHHhhhcCCCC-CccccccccccChhhHHHhhhcc
Q 008149          442 GGLTMLSVFSGIGGAEVTLHRL---GIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKL  517 (576)
Q Consensus       442 ~~l~VLsLFSGiGG~slGL~~a---Gi~~k~vvavEid~~a~~t~k~~~~~tn~~g-~l~~~~DI~~lt~~~Ie~l~~~~  517 (576)
                      .+.+|||+-||.|+..+.+.++   +.   .|+++|+++......+.++...+... ..+..+|+.+.    +..+ ...
T Consensus        63 ~~~~VLdiG~G~G~~~~~la~~~~~~~---~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~----l~~~-~~~  134 (248)
T 3tfw_A           63 QAKRILEIGTLGGYSTIWMARELPADG---QLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQS----LESL-GEC  134 (248)
T ss_dssp             TCSEEEEECCTTSHHHHHHHTTSCTTC---EEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHH----HHTC-CSC
T ss_pred             CCCEEEEecCCchHHHHHHHHhCCCCC---EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHH----HHhc-CCC
Confidence            3578999999999999988876   43   47899999999888888876543322 22345565432    1111 112


Q ss_pred             CCccEEEecCCCCC
Q 008149          518 GSIDFVICQNSVPQ  531 (576)
Q Consensus       518 g~~DLVIGGpPCQ~  531 (576)
                      +.||+|+-..++..
T Consensus       135 ~~fD~V~~d~~~~~  148 (248)
T 3tfw_A          135 PAFDLIFIDADKPN  148 (248)
T ss_dssp             CCCSEEEECSCGGG
T ss_pred             CCeEEEEECCchHH
Confidence            47999998777654

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}

Probab=92.07  E-value=0.095  Score=51.81  Aligned_cols=80  Identities=15%  Similarity=0.101  Sum_probs=53.1

Q ss_pred             cCCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCC-CccccccccccChhhHHHhhhcc
Q 008149          439 MFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKL  517 (576)
Q Consensus       439 ~f~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g-~l~~~~DI~~lt~~~Ie~l~~~~  517 (576)
                      ..+.+.+|||+-||.|.+...+..+..+-..|+++|+++......+.+....+... ..++.+|+.++..        . 
T Consensus       115 ~l~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~--------~-  185 (305)
T 3ocj_A          115 HLRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKLDT--------R-  185 (305)
T ss_dssp             HCCTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGCCC--------C-
T ss_pred             hCCCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhcCCc--------c-
Confidence            34567899999999999988873222222357899999999888887664332111 2245677776542        1 


Q ss_pred             CCccEEEecC
Q 008149          518 GSIDFVICQN  527 (576)
Q Consensus       518 g~~DLVIGGp  527 (576)
                      +.||+|+...
T Consensus       186 ~~fD~v~~~~  195 (305)
T 3ocj_A          186 EGYDLLTSNG  195 (305)
T ss_dssp             SCEEEEECCS
T ss_pred             CCeEEEEECC
Confidence            5788888533

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21

Probab=92.04  E-value=0.31  Score=46.02  Aligned_cols=74  Identities=24%  Similarity=0.192  Sum_probs=50.8

Q ss_pred             CCCCcccccCCCCChhHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHhhhcCCC-CCccccccccccChhhHHHhhhccC
Q 008149          441 PGGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQT-GELVQIEDIQALTTKKFESLIHKLG  518 (576)
Q Consensus       441 ~~~l~VLsLFSGiGG~slGL~~a-Gi~~k~vvavEid~~a~~t~k~~~~~tn~~-g~l~~~~DI~~lt~~~Ie~l~~~~g  518 (576)
                      +.+.+|||+=||.|.+...|.+. |..   |+++|+++......+......+.. ...+..+|+.++..         -+
T Consensus        35 ~~~~~VLDiGcG~G~~~~~la~~~~~~---v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~---------~~  102 (256)
T 1nkv_A           35 KPGTRILDLGSGSGEMLCTWARDHGIT---GTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVA---------NE  102 (256)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHHTCCE---EEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCC---------SS
T ss_pred             CCCCEEEEECCCCCHHHHHHHHhcCCe---EEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChHhCCc---------CC
Confidence            34679999999999999888765 653   689999999888777665433221 12245677766542         14


Q ss_pred             CccEEEec
Q 008149          519 SIDFVICQ  526 (576)
Q Consensus       519 ~~DLVIGG  526 (576)
                      .||+|+..
T Consensus       103 ~fD~V~~~  110 (256)
T 1nkv_A          103 KCDVAACV  110 (256)
T ss_dssp             CEEEEEEE
T ss_pred             CCCEEEEC
Confidence            67888763

>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}

Probab=92.03  E-value=0.12  Score=56.63  Aligned_cols=80  Identities=18%  Similarity=0.062  Sum_probs=49.7

Q ss_pred             CcccccCCCCChhHHHHHH--------cCC------ceeeEEEeeCCHHHHHHHHHHhhhcCCCCCc-cccccccccChh
Q 008149          444 LTMLSVFSGIGGAEVTLHR--------LGI------KLKGVISIETSETNRRILKRWWESSGQTGEL-VQIEDIQALTTK  508 (576)
Q Consensus       444 l~VLsLFSGiGG~slGL~~--------aGi------~~k~vvavEid~~a~~t~k~~~~~tn~~g~l-~~~~DI~~lt~~  508 (576)
                      .+|+|.+||.|||-+.+.+        .+.      .-..++++|+++.+.++.+.+..-++....+ +..+|.-.... 
T Consensus       246 ~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~i~i~~gDtL~~~~-  324 (544)
T 3khk_A          246 GRVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMVIRGIDFNFGKKNADSFLDDQ-  324 (544)
T ss_dssp             EEEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHHTTCCCBCCSSSCCTTTSCS-
T ss_pred             CeEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHHHhCCCcccceeccchhcCcc-
Confidence            4899999999999877532        110      0135899999999988887654333222221 13444322110 


Q ss_pred             hHHHhhhccCCccEEEecCCCC
Q 008149          509 KFESLIHKLGSIDFVICQNSVP  530 (576)
Q Consensus       509 ~Ie~l~~~~g~~DLVIGGpPCQ  530 (576)
                            .....||+|++-||=.
T Consensus       325 ------~~~~~fD~Iv~NPPf~  340 (544)
T 3khk_A          325 ------HPDLRADFVMTNPPFN  340 (544)
T ss_dssp             ------CTTCCEEEEEECCCSS
T ss_pred             ------cccccccEEEECCCcC
Confidence                  0125799999999964

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}

Probab=92.01  E-value=0.15  Score=46.80  Aligned_cols=76  Identities=14%  Similarity=0.101  Sum_probs=50.4

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 008149          442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  521 (576)
Q Consensus       442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~D  521 (576)
                      .+.+|||+-||.|.+...|.+.|.+   ++++|+++......+..      ....+...|+.++.....    ..-+.||
T Consensus        52 ~~~~vLdiG~G~G~~~~~l~~~~~~---v~~vD~s~~~~~~a~~~------~~~~~~~~~~~~~~~~~~----~~~~~fD  118 (227)
T 3e8s_A           52 QPERVLDLGCGEGWLLRALADRGIE---AVGVDGDRTLVDAARAA------GAGEVHLASYAQLAEAKV----PVGKDYD  118 (227)
T ss_dssp             CCSEEEEETCTTCHHHHHHHTTTCE---EEEEESCHHHHHHHHHT------CSSCEEECCHHHHHTTCS----CCCCCEE
T ss_pred             CCCEEEEeCCCCCHHHHHHHHCCCE---EEEEcCCHHHHHHHHHh------cccccchhhHHhhccccc----ccCCCcc
Confidence            3488999999999999999998873   68999999987776643      112234455554421100    0113489


Q ss_pred             EEEecCCCC
Q 008149          522 FVICQNSVP  530 (576)
Q Consensus       522 LVIGGpPCQ  530 (576)
                      +|+......
T Consensus       119 ~v~~~~~l~  127 (227)
T 3e8s_A          119 LICANFALL  127 (227)
T ss_dssp             EEEEESCCC
T ss_pred             EEEECchhh
Confidence            888765544

>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*

Probab=91.97  E-value=0.32  Score=48.00  Aligned_cols=73  Identities=15%  Similarity=0.214  Sum_probs=51.1

Q ss_pred             CCCCcccccCCCCChhHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHhhhcCCCC-CccccccccccChhhHHHhhhccC
Q 008149          441 PGGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLG  518 (576)
Q Consensus       441 ~~~l~VLsLFSGiGG~slGL~~a-Gi~~k~vvavEid~~a~~t~k~~~~~tn~~g-~l~~~~DI~~lt~~~Ie~l~~~~g  518 (576)
                      +.+.+|||+-||.|++...+.+. |.   .|+++|+++......+......+... ..+..+|+.+++           +
T Consensus        89 ~~~~~vLDiGcG~G~~~~~la~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----------~  154 (318)
T 2fk8_A           89 KPGMTLLDIGCGWGTTMRRAVERFDV---NVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFA-----------E  154 (318)
T ss_dssp             CTTCEEEEESCTTSHHHHHHHHHHCC---EEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGCC-----------C
T ss_pred             CCcCEEEEEcccchHHHHHHHHHCCC---EEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHHCC-----------C
Confidence            34679999999999999888776 86   37889999998888776654332111 224456665542           4


Q ss_pred             CccEEEecC
Q 008149          519 SIDFVICQN  527 (576)
Q Consensus       519 ~~DLVIGGp  527 (576)
                      .||+|+...
T Consensus       155 ~fD~v~~~~  163 (318)
T 2fk8_A          155 PVDRIVSIE  163 (318)
T ss_dssp             CCSEEEEES
T ss_pred             CcCEEEEeC
Confidence            688888654

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}

Probab=91.79  E-value=0.19  Score=47.56  Aligned_cols=44  Identities=20%  Similarity=0.267  Sum_probs=36.7

Q ss_pred             ccCCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHH
Q 008149          438 SMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILK  484 (576)
Q Consensus       438 ~~f~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k  484 (576)
                      +.++.+.+|||+-||.|.+...+.+.|.+   |+++|+++......+
T Consensus        37 ~~~~~~~~vLDiGcG~G~~~~~l~~~~~~---v~gvD~s~~~~~~a~   80 (240)
T 3dli_A           37 PYFKGCRRVLDIGCGRGEFLELCKEEGIE---SIGVDINEDMIKFCE   80 (240)
T ss_dssp             GGTTTCSCEEEETCTTTHHHHHHHHHTCC---EEEECSCHHHHHHHH
T ss_pred             hhhcCCCeEEEEeCCCCHHHHHHHhCCCc---EEEEECCHHHHHHHH
Confidence            34456789999999999999999998874   689999999876654

>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens}

Probab=91.78  E-value=0.15  Score=45.49  Aligned_cols=39  Identities=23%  Similarity=0.175  Sum_probs=34.7

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHhCCCCChhhhhHhHhhcc
Q 008149           90 EITLQLLEMGFSENQVSLAIEKFGSKTPISELADKIFSGQ  129 (576)
Q Consensus        90 ~k~~~L~~MGFseeEas~AI~r~G~da~i~eLvD~I~Aaq  129 (576)
                      +++..|+.|||++..|..|+-.||.. .++.-+++|+.-+
T Consensus         5 ~~l~~L~~MGF~~~~a~~AL~~t~n~-~~e~A~~wL~~~~   43 (126)
T 2lbc_A            5 SSVMQLAEMGFPLEACRKAVYFTGNM-GAEVAFNWIIVHM   43 (126)
T ss_dssp             HHHHHHHTTSSCCHHHHHHHHHHTSC-CHHHHHHHHHHGG
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHcCCC-CHHHHHHHHHHhc
Confidence            36678999999999999999999884 7999999998876

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}

Probab=91.73  E-value=0.25  Score=45.30  Aligned_cols=73  Identities=18%  Similarity=0.198  Sum_probs=49.3

Q ss_pred             CCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 008149          441 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI  520 (576)
Q Consensus       441 ~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~  520 (576)
                      ..+.+|||+-||.|.+...+.+.|.   .++++|+++......+...       ..+...|+.++... +     .-+.+
T Consensus        31 ~~~~~vLdiG~G~G~~~~~l~~~~~---~~~~~D~~~~~~~~~~~~~-------~~~~~~d~~~~~~~-~-----~~~~f   94 (230)
T 3cc8_A           31 KEWKEVLDIGCSSGALGAAIKENGT---RVSGIEAFPEAAEQAKEKL-------DHVVLGDIETMDMP-Y-----EEEQF   94 (230)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHTTTC---EEEEEESSHHHHHHHHTTS-------SEEEESCTTTCCCC-S-----CTTCE
T ss_pred             cCCCcEEEeCCCCCHHHHHHHhcCC---eEEEEeCCHHHHHHHHHhC-------CcEEEcchhhcCCC-C-----CCCcc
Confidence            4568999999999999999988874   3789999999877665321       12445666543210 0     11467


Q ss_pred             cEEEecCCC
Q 008149          521 DFVICQNSV  529 (576)
Q Consensus       521 DLVIGGpPC  529 (576)
                      |+|+.....
T Consensus        95 D~v~~~~~l  103 (230)
T 3cc8_A           95 DCVIFGDVL  103 (230)
T ss_dssp             EEEEEESCG
T ss_pred             CEEEECChh
Confidence            888865443

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A

Probab=91.64  E-value=0.2  Score=48.99  Aligned_cols=75  Identities=16%  Similarity=0.142  Sum_probs=53.5

Q ss_pred             CCCCcccccCCCCChhHHHHHHc---CCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhcc
Q 008149          441 PGGLTMLSVFSGIGGAEVTLHRL---GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKL  517 (576)
Q Consensus       441 ~~~l~VLsLFSGiGG~slGL~~a---Gi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~  517 (576)
                      ..+.+|||+-||.|.+...|...   |.   .|+++|+++......+......+ ....+..+|+.++..         .
T Consensus        21 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~---~v~gvD~s~~~~~~a~~~~~~~~-~~v~~~~~d~~~~~~---------~   87 (284)
T 3gu3_A           21 TKPVHIVDYGCGYGYLGLVLMPLLPEGS---KYTGIDSGETLLAEARELFRLLP-YDSEFLEGDATEIEL---------N   87 (284)
T ss_dssp             CSCCEEEEETCTTTHHHHHHTTTSCTTC---EEEEEESCHHHHHHHHHHHHSSS-SEEEEEESCTTTCCC---------S
T ss_pred             CCCCeEEEecCCCCHHHHHHHHhCCCCC---EEEEEECCHHHHHHHHHHHHhcC-CceEEEEcchhhcCc---------C
Confidence            35689999999999999988776   44   37899999998887776654321 122345678876542         1


Q ss_pred             CCccEEEecCC
Q 008149          518 GSIDFVICQNS  528 (576)
Q Consensus       518 g~~DLVIGGpP  528 (576)
                      +.||+|+....
T Consensus        88 ~~fD~v~~~~~   98 (284)
T 3gu3_A           88 DKYDIAICHAF   98 (284)
T ss_dssp             SCEEEEEEESC
T ss_pred             CCeeEEEECCh
Confidence            47999997653

>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*

Probab=91.59  E-value=0.4  Score=46.39  Aligned_cols=73  Identities=15%  Similarity=0.272  Sum_probs=50.6

Q ss_pred             CCCCcccccCCCCChhHHHHH-HcCCceeeEEEeeCCHHHHHHHHHHhhhcCCC-CCccccccccccChhhHHHhhhccC
Q 008149          441 PGGLTMLSVFSGIGGAEVTLH-RLGIKLKGVISIETSETNRRILKRWWESSGQT-GELVQIEDIQALTTKKFESLIHKLG  518 (576)
Q Consensus       441 ~~~l~VLsLFSGiGG~slGL~-~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~-g~l~~~~DI~~lt~~~Ie~l~~~~g  518 (576)
                      +.+.+|||+-||.|++...+. ..|.   .|.++|+++......+......+.. ...+..+|+.++.           +
T Consensus        63 ~~~~~vLDiGcG~G~~~~~l~~~~~~---~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~  128 (287)
T 1kpg_A           63 QPGMTLLDVGCGWGATMMRAVEKYDV---NVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFD-----------E  128 (287)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHHCC---EEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCC-----------C
T ss_pred             CCcCEEEEECCcccHHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChhhCC-----------C
Confidence            346799999999999998877 6676   4789999999888777665432211 2224456665443           4


Q ss_pred             CccEEEecC
Q 008149          519 SIDFVICQN  527 (576)
Q Consensus       519 ~~DLVIGGp  527 (576)
                      .||+|+...
T Consensus       129 ~fD~v~~~~  137 (287)
T 1kpg_A          129 PVDRIVSIG  137 (287)
T ss_dssp             CCSEEEEES
T ss_pred             CeeEEEEeC
Confidence            688888653

>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*

Probab=91.54  E-value=0.16  Score=44.17  Aligned_cols=80  Identities=15%  Similarity=0.102  Sum_probs=51.0

Q ss_pred             CCCCcccccCCCCChhHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccCh-hhHHHhhhccC
Q 008149          441 PGGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTT-KKFESLIHKLG  518 (576)
Q Consensus       441 ~~~l~VLsLFSGiGG~slGL~~a-Gi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~-~~Ie~l~~~~g  518 (576)
                      ..+.+|||+-||.|++...+.+. |-. ..++++|+++ ....          ....+...|+.+... +.+.... .-+
T Consensus        21 ~~~~~vLd~G~G~G~~~~~l~~~~~~~-~~v~~~D~~~-~~~~----------~~~~~~~~d~~~~~~~~~~~~~~-~~~   87 (180)
T 1ej0_A           21 KPGMTVVDLGAAPGGWSQYVVTQIGGK-GRIIACDLLP-MDPI----------VGVDFLQGDFRDELVMKALLERV-GDS   87 (180)
T ss_dssp             CTTCEEEEESCTTCHHHHHHHHHHCTT-CEEEEEESSC-CCCC----------TTEEEEESCTTSHHHHHHHHHHH-TTC
T ss_pred             CCCCeEEEeCCCCCHHHHHHHHHhCCC-CeEEEEECcc-cccc----------CcEEEEEcccccchhhhhhhccC-CCC
Confidence            34678999999999999988776 432 2478899998 4221          112245567765431 1111111 125


Q ss_pred             CccEEEecCCCCCcc
Q 008149          519 SIDFVICQNSVPQIP  533 (576)
Q Consensus       519 ~~DLVIGGpPCQ~FS  533 (576)
                      .+|+|+..+|+..+.
T Consensus        88 ~~D~i~~~~~~~~~~  102 (180)
T 1ej0_A           88 KVQVVMSDMAPNMSG  102 (180)
T ss_dssp             CEEEEEECCCCCCCS
T ss_pred             ceeEEEECCCccccC
Confidence            799999999987654

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}

Probab=91.49  E-value=0.34  Score=45.76  Aligned_cols=74  Identities=9%  Similarity=0.027  Sum_probs=53.1

Q ss_pred             CCCcccccCCCCChhHHHHHHc--CCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCC
Q 008149          442 GGLTMLSVFSGIGGAEVTLHRL--GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGS  519 (576)
Q Consensus       442 ~~l~VLsLFSGiGG~slGL~~a--Gi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~  519 (576)
                      .+.+|||+-||.|.+...+.+.  |.   .++++|+++......+...     +...+..+|+.++..         .+.
T Consensus        33 ~~~~vLdiG~G~G~~~~~l~~~~~~~---~v~~~D~s~~~~~~a~~~~-----~~~~~~~~d~~~~~~---------~~~   95 (259)
T 2p35_A           33 RVLNGYDLGCGPGNSTELLTDRYGVN---VITGIDSDDDMLEKAADRL-----PNTNFGKADLATWKP---------AQK   95 (259)
T ss_dssp             CCSSEEEETCTTTHHHHHHHHHHCTT---SEEEEESCHHHHHHHHHHS-----TTSEEEECCTTTCCC---------SSC
T ss_pred             CCCEEEEecCcCCHHHHHHHHhCCCC---EEEEEECCHHHHHHHHHhC-----CCcEEEECChhhcCc---------cCC
Confidence            4678999999999999988877  55   3789999999887776541     223355677776541         146


Q ss_pred             ccEEEecCCCCCc
Q 008149          520 IDFVICQNSVPQI  532 (576)
Q Consensus       520 ~DLVIGGpPCQ~F  532 (576)
                      ||+|+.....+-+
T Consensus        96 fD~v~~~~~l~~~  108 (259)
T 2p35_A           96 ADLLYANAVFQWV  108 (259)
T ss_dssp             EEEEEEESCGGGS
T ss_pred             cCEEEEeCchhhC
Confidence            8999986654433

>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1

Probab=91.48  E-value=0.19  Score=41.74  Aligned_cols=39  Identities=13%  Similarity=0.109  Sum_probs=33.2

Q ss_pred             hhhhhHHHhcCCC-ChHHHHHHHHHhCCCCcHHHHHHHHHHh
Q 008149           16 HIEKRASLLMMNF-SVNEVDFALDKLGKDAPVYELVDFITAA   56 (576)
Q Consensus        16 ~s~~r~~li~MGF-s~e~V~kAIqe~Ge~~~~~~Ile~Ll~~   56 (576)
                      ..+...+|++||| ..+.+.+|++..+. | ++.-+|+|+..
T Consensus        29 ye~qi~qL~eMGF~dr~~~~~AL~~t~G-n-ve~Ave~L~~~   68 (74)
T 1vej_A           29 YQQELEELKALGFANRDANLQALVATDG-D-IHAAIEMLLGA   68 (74)
T ss_dssp             SHHHHHHHHHHTCCCHHHHHHHHHHTTS-C-HHHHHHHHHTC
T ss_pred             HHHHHHHHHHcCCCcHHHHHHHHHHhCC-C-HHHHHHHHHhC
Confidence            4568899999999 57999999999875 5 88999999963

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}

Probab=91.43  E-value=0.38  Score=47.13  Aligned_cols=83  Identities=16%  Similarity=0.125  Sum_probs=55.0

Q ss_pred             CCCcccccCCCCChhHHHHHHc--CCceeeEEEeeCCHHHHHHHHHHhhhc--CCCCCccccccccccChhhHHHhhhcc
Q 008149          442 GGLTMLSVFSGIGGAEVTLHRL--GIKLKGVISIETSETNRRILKRWWESS--GQTGELVQIEDIQALTTKKFESLIHKL  517 (576)
Q Consensus       442 ~~l~VLsLFSGiGG~slGL~~a--Gi~~k~vvavEid~~a~~t~k~~~~~t--n~~g~l~~~~DI~~lt~~~Ie~l~~~~  517 (576)
                      .+.+|||+-||.|.+...|.+.  +.  ..|+++|+++......+......  ......++.+|+.++....-..+  ..
T Consensus        36 ~~~~vLDiGcG~G~~~~~la~~~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~--~~  111 (299)
T 3g5t_A           36 ERKLLVDVGCGPGTATLQMAQELKPF--EQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDDFKFLGADSV--DK  111 (299)
T ss_dssp             CCSEEEEETCTTTHHHHHHHHHSSCC--SEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTTCCGGGCTTTT--TS
T ss_pred             CCCEEEEECCCCCHHHHHHHHhCCCC--CEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHHhCCccccccc--cC
Confidence            5789999999999999988852  22  34789999999888777665432  12233356788877652210000  11


Q ss_pred             CCccEEEecCC
Q 008149          518 GSIDFVICQNS  528 (576)
Q Consensus       518 g~~DLVIGGpP  528 (576)
                      +.||+|+....
T Consensus       112 ~~fD~V~~~~~  122 (299)
T 3g5t_A          112 QKIDMITAVEC  122 (299)
T ss_dssp             SCEEEEEEESC
T ss_pred             CCeeEEeHhhH
Confidence            57999997654

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}

Probab=91.42  E-value=0.17  Score=48.40  Aligned_cols=82  Identities=12%  Similarity=0.106  Sum_probs=53.9

Q ss_pred             CCcccccCCCCChhHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHhhhcCCC-C-CccccccccccChhhHHHhhhccCC
Q 008149          443 GLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQT-G-ELVQIEDIQALTTKKFESLIHKLGS  519 (576)
Q Consensus       443 ~l~VLsLFSGiGG~slGL~~a-Gi~~k~vvavEid~~a~~t~k~~~~~tn~~-g-~l~~~~DI~~lt~~~Ie~l~~~~g~  519 (576)
                      +.+|||+-||+|..++.|.++ +-. ..|+++|+++...+..+.++...+.. . ..++.+|..++-.    .+  ..+.
T Consensus        57 ~~~vLdiG~G~G~~~~~la~~~~~~-~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l~----~~--~~~~  129 (221)
T 3dr5_A           57 STGAIAITPAAGLVGLYILNGLADN-TTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVMS----RL--ANDS  129 (221)
T ss_dssp             CCEEEEESTTHHHHHHHHHHHSCTT-SEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHGG----GS--CTTC
T ss_pred             CCCEEEEcCCchHHHHHHHHhCCCC-CEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHHH----Hh--cCCC
Confidence            358999999999999988764 211 24789999999999999888765332 1 1234455543211    11  0268


Q ss_pred             ccEEEecCCCCC
Q 008149          520 IDFVICQNSVPQ  531 (576)
Q Consensus       520 ~DLVIGGpPCQ~  531 (576)
                      ||+|+-..+...
T Consensus       130 fD~V~~d~~~~~  141 (221)
T 3dr5_A          130 YQLVFGQVSPMD  141 (221)
T ss_dssp             EEEEEECCCTTT
T ss_pred             cCeEEEcCcHHH
Confidence            999987665544

>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}

Probab=91.33  E-value=0.25  Score=51.97  Aligned_cols=71  Identities=18%  Similarity=0.223  Sum_probs=48.0

Q ss_pred             CCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCC-CccccccccccChhhHHHhhhccCCcc
Q 008149          443 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGSID  521 (576)
Q Consensus       443 ~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g-~l~~~~DI~~lt~~~Ie~l~~~~g~~D  521 (576)
                      +-+|||+=||.|-+++-..++|-.  -|+|||.++.+..+ +..-..++... ..++.+|+.++..         ...+|
T Consensus        84 ~k~VLDvG~GtGiLs~~Aa~aGA~--~V~ave~s~~~~~a-~~~~~~n~~~~~i~~i~~~~~~~~l---------pe~~D  151 (376)
T 4hc4_A           84 GKTVLDVGAGTGILSIFCAQAGAR--RVYAVEASAIWQQA-REVVRFNGLEDRVHVLPGPVETVEL---------PEQVD  151 (376)
T ss_dssp             TCEEEEETCTTSHHHHHHHHTTCS--EEEEEECSTTHHHH-HHHHHHTTCTTTEEEEESCTTTCCC---------SSCEE
T ss_pred             CCEEEEeCCCccHHHHHHHHhCCC--EEEEEeChHHHHHH-HHHHHHcCCCceEEEEeeeeeeecC---------Ccccc
Confidence            457999999999999999999984  58999999754322 32222222222 2245678877642         14799


Q ss_pred             EEEe
Q 008149          522 FVIC  525 (576)
Q Consensus       522 LVIG  525 (576)
                      +||.
T Consensus       152 vivs  155 (376)
T 4hc4_A          152 AIVS  155 (376)
T ss_dssp             EEEC
T ss_pred             EEEe
Confidence            9994

>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}

Probab=91.27  E-value=0.26  Score=53.15  Aligned_cols=75  Identities=15%  Similarity=0.151  Sum_probs=51.2

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCC-CCCccccccccccChhhHHHhhhccCCc
Q 008149          442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQ-TGELVQIEDIQALTTKKFESLIHKLGSI  520 (576)
Q Consensus       442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~-~g~l~~~~DI~~lt~~~Ie~l~~~~g~~  520 (576)
                      .+.+|||+-||.|.+.+.+.+.|.  .-|+++|+++ .....+......+. ....++.+|+.++..         .+.|
T Consensus       158 ~~~~VLDiGcGtG~la~~la~~~~--~~V~gvD~s~-~l~~A~~~~~~~gl~~~v~~~~~d~~~~~~---------~~~f  225 (480)
T 3b3j_A          158 KDKIVLDVGCGSGILSFFAAQAGA--RKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEVSL---------PEQV  225 (480)
T ss_dssp             TTCEEEEESCSTTHHHHHHHHTTC--SEEEEEECHH-HHHHHHHHHHHTTCTTTEEEEESCTTTCCC---------SSCE
T ss_pred             CCCEEEEecCcccHHHHHHHHcCC--CEEEEEEcHH-HHHHHHHHHHHcCCCCcEEEEECchhhCcc---------CCCe
Confidence            357899999999999999988875  3588999998 54555544433322 122345677776531         1479


Q ss_pred             cEEEecCC
Q 008149          521 DFVICQNS  528 (576)
Q Consensus       521 DLVIGGpP  528 (576)
                      |+|+..+|
T Consensus       226 D~Ivs~~~  233 (480)
T 3b3j_A          226 DIIISEPM  233 (480)
T ss_dssp             EEEECCCC
T ss_pred             EEEEEeCc
Confidence            99997554

>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24

Probab=91.21  E-value=0.021  Score=55.19  Aligned_cols=77  Identities=14%  Similarity=0.040  Sum_probs=51.1

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 008149          442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  521 (576)
Q Consensus       442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~D  521 (576)
                      .+-+|||+.||.|++...+.+.|.   -|+++|+|+......+.+..  ......++.+|+.++...       ..+.+ 
T Consensus        29 ~~~~VLDiG~G~G~~~~~l~~~~~---~v~~id~~~~~~~~a~~~~~--~~~~v~~~~~D~~~~~~~-------~~~~f-   95 (245)
T 1yub_A           29 ETDTVYEIGTGKGHLTTKLAKISK---QVTSIELDSHLFNLSSEKLK--LNTRVTLIHQDILQFQFP-------NKQRY-   95 (245)
T ss_dssp             SSEEEEECSCCCSSCSHHHHHHSS---EEEESSSSCSSSSSSSCTTT--TCSEEEECCSCCTTTTCC-------CSSEE-
T ss_pred             CCCEEEEEeCCCCHHHHHHHHhCC---eEEEEECCHHHHHHHHHHhc--cCCceEEEECChhhcCcc-------cCCCc-
Confidence            467899999999999999988884   37899999887655443221  111223556788766421       01356 


Q ss_pred             EEEecCCCCC
Q 008149          522 FVICQNSVPQ  531 (576)
Q Consensus       522 LVIGGpPCQ~  531 (576)
                      +|++-+|...
T Consensus        96 ~vv~n~Py~~  105 (245)
T 1yub_A           96 KIVGNIPYHL  105 (245)
T ss_dssp             EEEEECCSSS
T ss_pred             EEEEeCCccc
Confidence            7888887654

>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*

Probab=91.17  E-value=0.14  Score=51.68  Aligned_cols=81  Identities=17%  Similarity=0.265  Sum_probs=54.6

Q ss_pred             CCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhc--C--CCCCccccccccccChhhHHHhhhc
Q 008149          441 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESS--G--QTGELVQIEDIQALTTKKFESLIHK  516 (576)
Q Consensus       441 ~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~t--n--~~g~l~~~~DI~~lt~~~Ie~l~~~  516 (576)
                      +++-+||+|.||.|++...+.+.+ ....|.+||+|+...+..+.++...  +  .+...++.+|..+.    +.   ..
T Consensus        94 ~~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~----l~---~~  165 (304)
T 2o07_A           94 PNPRKVLIIGGGDGGVLREVVKHP-SVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEF----MK---QN  165 (304)
T ss_dssp             SSCCEEEEEECTTSHHHHHHTTCT-TCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHH----HH---TC
T ss_pred             CCCCEEEEECCCchHHHHHHHHcC-CCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHH----Hh---hC
Confidence            456789999999999999887764 2345889999999999888876531  1  11222445665432    11   11


Q ss_pred             cCCccEEEecCCC
Q 008149          517 LGSIDFVICQNSV  529 (576)
Q Consensus       517 ~g~~DLVIGGpPC  529 (576)
                      .+.+|+|+..+|.
T Consensus       166 ~~~fD~Ii~d~~~  178 (304)
T 2o07_A          166 QDAFDVIITDSSD  178 (304)
T ss_dssp             SSCEEEEEEECC-
T ss_pred             CCCceEEEECCCC
Confidence            2579999987664

>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}

Probab=91.09  E-value=0.4  Score=47.32  Aligned_cols=52  Identities=13%  Similarity=0.173  Sum_probs=39.4

Q ss_pred             hhccccccCCCCCcccccCCCCChhHHHHHHc--CCceeeEEEeeCCHHHHHHHHHH
Q 008149          432 HLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRL--GIKLKGVISIETSETNRRILKRW  486 (576)
Q Consensus       432 ~lsvLK~~f~~~l~VLsLFSGiGG~slGL~~a--Gi~~k~vvavEid~~a~~t~k~~  486 (576)
                      .++.|......+.+|||+-||.|.+.+.+.+.  +.   .|+++|+++......+.+
T Consensus        36 ~l~~l~~~~~~~~~VLDiGCG~G~~~~~la~~~~~~---~v~gvDis~~~i~~A~~~   89 (292)
T 3g07_A           36 RLRVLKPEWFRGRDVLDLGCNVGHLTLSIACKWGPS---RMVGLDIDSRLIHSARQN   89 (292)
T ss_dssp             GGGTSCGGGTTTSEEEEESCTTCHHHHHHHHHTCCS---EEEEEESCHHHHHHHHHT
T ss_pred             HHHhhhhhhcCCCcEEEeCCCCCHHHHHHHHHcCCC---EEEEECCCHHHHHHHHHH
Confidence            34555554345789999999999999988876  43   478999999987776654

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13

Probab=90.99  E-value=0.35  Score=48.54  Aligned_cols=83  Identities=24%  Similarity=0.262  Sum_probs=54.0

Q ss_pred             CCCcccccCCCCChhHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHhhhc------CC-----CCCccccccccccChhh
Q 008149          442 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESS------GQ-----TGELVQIEDIQALTTKK  509 (576)
Q Consensus       442 ~~l~VLsLFSGiGG~slGL~~a-Gi~~k~vvavEid~~a~~t~k~~~~~t------n~-----~g~l~~~~DI~~lt~~~  509 (576)
                      .+.+|||+.||.|.+...+.++ |-. ..|+++|+++.+....+.+....      |+     ....+..+|+.++.. .
T Consensus       105 ~g~~VLDiG~G~G~~~~~la~~~g~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~~d~~~~~~-~  182 (336)
T 2b25_A          105 PGDTVLEAGSGSGGMSLFLSKAVGSQ-GRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATE-D  182 (336)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHHCTT-CEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC---
T ss_pred             CCCEEEEeCCCcCHHHHHHHHHhCCC-ceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEECChHHccc-c
Confidence            4678999999999999998886 532 24789999999888887765431      11     112245677766531 1


Q ss_pred             HHHhhhccCCccEEEecCCCCC
Q 008149          510 FESLIHKLGSIDFVICQNSVPQ  531 (576)
Q Consensus       510 Ie~l~~~~g~~DLVIGGpPCQ~  531 (576)
                      +.     .+.||+|+...|+..
T Consensus       183 ~~-----~~~fD~V~~~~~~~~  199 (336)
T 2b25_A          183 IK-----SLTFDAVALDMLNPH  199 (336)
T ss_dssp             ----------EEEEEECSSSTT
T ss_pred             cC-----CCCeeEEEECCCCHH
Confidence            11     146999998766543

>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}

Probab=90.87  E-value=0.3  Score=49.05  Aligned_cols=81  Identities=10%  Similarity=-0.023  Sum_probs=55.4

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCc-eeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 008149          442 GGLTMLSVFSGIGGAEVTLHRLGIK-LKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI  520 (576)
Q Consensus       442 ~~l~VLsLFSGiGG~slGL~~aGi~-~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~  520 (576)
                      .+-+|||+=||.|.++..|.+.|-+ -..|+++|+|+.....++..+ .   ....++.+|+.+++-.++..  ......
T Consensus        42 ~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~-~---~~v~~i~~D~~~~~~~~~~~--~~~~~~  115 (279)
T 3uzu_A           42 RGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRF-G---ELLELHAGDALTFDFGSIAR--PGDEPS  115 (279)
T ss_dssp             TTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHH-G---GGEEEEESCGGGCCGGGGSC--SSSSCC
T ss_pred             CcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhc-C---CCcEEEECChhcCChhHhcc--cccCCc
Confidence            4678999999999999999887642 011789999999998887763 1   12236779999887544310  000134


Q ss_pred             cEEEecCC
Q 008149          521 DFVICQNS  528 (576)
Q Consensus       521 DLVIGGpP  528 (576)
                      +.|||-.|
T Consensus       116 ~~vv~NlP  123 (279)
T 3uzu_A          116 LRIIGNLP  123 (279)
T ss_dssp             EEEEEECC
T ss_pred             eEEEEccC
Confidence            67777776

>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*

Probab=90.82  E-value=0.2  Score=49.82  Aligned_cols=81  Identities=22%  Similarity=0.232  Sum_probs=54.3

Q ss_pred             CCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcC----CCCCccccccccccChhhHHHhhhc
Q 008149          441 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSG----QTGELVQIEDIQALTTKKFESLIHK  516 (576)
Q Consensus       441 ~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn----~~g~l~~~~DI~~lt~~~Ie~l~~~  516 (576)
                      +++.+||+|-||.|++...+.+.. +...+.+||+|+...+..+.++...+    .+...++.+|+.+.    +.   ..
T Consensus        77 ~~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~----l~---~~  148 (283)
T 2i7c_A           77 KEPKNVLVVGGGDGGIIRELCKYK-SVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKF----LE---NV  148 (283)
T ss_dssp             SSCCEEEEEECTTSHHHHHHTTCT-TCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHH----HH---HC
T ss_pred             CCCCeEEEEeCCcCHHHHHHHHcC-CCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHH----HH---hC
Confidence            456799999999999998887663 23458899999999998888764321    11122345555432    11   11


Q ss_pred             cCCccEEEecCCC
Q 008149          517 LGSIDFVICQNSV  529 (576)
Q Consensus       517 ~g~~DLVIGGpPC  529 (576)
                      .+.+|+|+..++.
T Consensus       149 ~~~fD~Ii~d~~~  161 (283)
T 2i7c_A          149 TNTYDVIIVDSSD  161 (283)
T ss_dssp             CSCEEEEEEECCC
T ss_pred             CCCceEEEEcCCC
Confidence            3579999986653

>2cp8_A NEXT to BRCA1 gene 1 protein; UBA domain, structural genomics, human, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1

Probab=90.81  E-value=0.27  Score=38.65  Aligned_cols=37  Identities=19%  Similarity=0.091  Sum_probs=32.3

Q ss_pred             hhhHHHhcCCC-ChHHHHHHHHHhCCCCcHHHHHHHHHHh
Q 008149           18 EKRASLLMMNF-SVNEVDFALDKLGKDAPVYELVDFITAA   56 (576)
Q Consensus        18 ~~r~~li~MGF-s~e~V~kAIqe~Ge~~~~~~Ile~Ll~~   56 (576)
                      .+-.+|.+||| ..++-.+|++++|. + ++..++.||..
T Consensus        11 ~~L~~L~eMGF~D~~~N~~aL~~~~g-n-v~~aI~~Ll~~   48 (54)
T 2cp8_A           11 ALMAHLFEMGFCDRQLNLRLLKKHNY-N-ILQVVTELLQL   48 (54)
T ss_dssp             HHHHHHHHHTCCCHHHHHHHHTTTTT-C-HHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCcHHHHHHHHHHcCC-C-HHHHHHHHHhc
Confidence            35678999999 99999999999877 4 88999999975

>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1

Probab=90.66  E-value=0.3  Score=40.52  Aligned_cols=39  Identities=13%  Similarity=0.192  Sum_probs=32.4

Q ss_pred             hHHHHHHHhcCCC-HHHHHHHHHHhCCCCChhhhhHhHhhcc
Q 008149           89 MEITLQLLEMGFS-ENQVSLAIEKFGSKTPISELADKIFSGQ  129 (576)
Q Consensus        89 ~~k~~~L~~MGFs-eeEas~AI~r~G~da~i~eLvD~I~Aaq  129 (576)
                      .+++..|++|||+ ++.+..||..++-|  ++.-||.++...
T Consensus        30 e~qi~qL~eMGF~dr~~~~~AL~~t~Gn--ve~Ave~L~~~~   69 (74)
T 1vej_A           30 QQELEELKALGFANRDANLQALVATDGD--IHAAIEMLLGAS   69 (74)
T ss_dssp             HHHHHHHHHHTCCCHHHHHHHHHHTTSC--HHHHHHHHHTCC
T ss_pred             HHHHHHHHHcCCCcHHHHHHHHHHhCCC--HHHHHHHHHhCC
Confidence            4688899999995 67779999999876  777789988765

>2juj_A E3 ubiquitin-protein ligase CBL; alpha helix, UBA domain, calcium, cytoplasm, metal- binding, phosphorylation, proto-oncogene, SH2 domain; NMR {Homo sapiens}

Probab=90.60  E-value=0.23  Score=39.09  Aligned_cols=31  Identities=13%  Similarity=0.143  Sum_probs=27.0

Q ss_pred             hhHHHHHHHhcCCCHHHHHHHHHHhCCCCCh
Q 008149           88 TMEITLQLLEMGFSENQVSLAIEKFGSKTPI  118 (576)
Q Consensus        88 ~~~k~~~L~~MGFseeEas~AI~r~G~da~i  118 (576)
                      .++++..|+.|||+.+.|..|+....+|..+
T Consensus         7 ~e~~Ia~L~smGfsr~da~~AL~ia~Ndv~~   37 (56)
T 2juj_A            7 LSSEIENLMSQGYSYQDIQKALVIAQNNIEM   37 (56)
T ss_dssp             HHHHHHHHHTTTCCHHHHHHHHHHTTTCSHH
T ss_pred             ChHHHHHHHHcCCCHHHHHHHHHHhcccHHH
Confidence            3468899999999999999999999998443

>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}

Probab=90.47  E-value=0.15  Score=50.35  Aligned_cols=77  Identities=17%  Similarity=0.149  Sum_probs=53.4

Q ss_pred             hccccccCCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHH
Q 008149          433 LSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFES  512 (576)
Q Consensus       433 lsvLK~~f~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~  512 (576)
                      +..|..+.+.+-+|||+=||.|.+...|...|.+   |+++|+++...+..+      .+++..+..+|+.++.-     
T Consensus        30 ~~~l~~~~~~~~~vLDvGcGtG~~~~~l~~~~~~---v~gvD~s~~ml~~a~------~~~~v~~~~~~~e~~~~-----   95 (257)
T 4hg2_A           30 FRWLGEVAPARGDALDCGCGSGQASLGLAEFFER---VHAVDPGEAQIRQAL------RHPRVTYAVAPAEDTGL-----   95 (257)
T ss_dssp             HHHHHHHSSCSSEEEEESCTTTTTHHHHHTTCSE---EEEEESCHHHHHTCC------CCTTEEEEECCTTCCCC-----
T ss_pred             HHHHHHhcCCCCCEEEEcCCCCHHHHHHHHhCCE---EEEEeCcHHhhhhhh------hcCCceeehhhhhhhcc-----
Confidence            3344555566778999999999999999999864   689999998654322      12333355677666542     


Q ss_pred             hhhccCCccEEEec
Q 008149          513 LIHKLGSIDFVICQ  526 (576)
Q Consensus       513 l~~~~g~~DLVIGG  526 (576)
                         .-+.||+|+.+
T Consensus        96 ---~~~sfD~v~~~  106 (257)
T 4hg2_A           96 ---PPASVDVAIAA  106 (257)
T ss_dssp             ---CSSCEEEEEEC
T ss_pred             ---cCCcccEEEEe
Confidence               12579999974

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18

Probab=90.41  E-value=0.54  Score=45.72  Aligned_cols=76  Identities=18%  Similarity=0.256  Sum_probs=51.3

Q ss_pred             CCCCcccccCCCCChhHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHhhhcCCC-CCccccccccccChhhHHHhhhccC
Q 008149          441 PGGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQT-GELVQIEDIQALTTKKFESLIHKLG  518 (576)
Q Consensus       441 ~~~l~VLsLFSGiGG~slGL~~a-Gi~~k~vvavEid~~a~~t~k~~~~~tn~~-g~l~~~~DI~~lt~~~Ie~l~~~~g  518 (576)
                      +.+.+|||+-||.|.+...+.+. |.   .|+++|+++......+......+.. ...+..+|+.++.-.        -+
T Consensus        81 ~~~~~vLDiGcG~G~~~~~l~~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~--------~~  149 (297)
T 2o57_A           81 QRQAKGLDLGAGYGGAARFLVRKFGV---SIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPCE--------DN  149 (297)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHHCC---EEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSSC--------TT
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHhCC---EEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCcccCCCC--------CC
Confidence            45679999999999999988876 76   3789999999877776654332221 122456677665311        14


Q ss_pred             CccEEEecC
Q 008149          519 SIDFVICQN  527 (576)
Q Consensus       519 ~~DLVIGGp  527 (576)
                      .||+|+...
T Consensus       150 ~fD~v~~~~  158 (297)
T 2o57_A          150 SYDFIWSQD  158 (297)
T ss_dssp             CEEEEEEES
T ss_pred             CEeEEEecc
Confidence            678887653

>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1

Probab=90.26  E-value=0.37  Score=37.49  Aligned_cols=38  Identities=21%  Similarity=0.062  Sum_probs=31.8

Q ss_pred             hhhhHHHhcCCCChH-HHHHHHHHhCCCCcHHHHHHHHHHh
Q 008149           17 IEKRASLLMMNFSVN-EVDFALDKLGKDAPVYELVDFITAA   56 (576)
Q Consensus        17 s~~r~~li~MGFs~e-~V~kAIqe~Ge~~~~~~Ile~Ll~~   56 (576)
                      .+...+|.+|||+.+ .+.+|++..+. | ++.-+|+|+..
T Consensus        10 ~~~l~~L~~MGF~d~~~n~~AL~~~~G-d-v~~Ave~L~~~   48 (54)
T 2dah_A           10 QVQLEQLRSMGFLNREANLQALIATGG-D-VDAAVEKLRQS   48 (54)
T ss_dssp             HHHHHHHHHHTCCCHHHHHHHHHHHTS-C-HHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCcHHHHHHHHHHcCC-C-HHHHHHHHHhC
Confidence            457899999999665 57999999875 5 88999999975

>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*

Probab=90.14  E-value=0.23  Score=50.11  Aligned_cols=81  Identities=17%  Similarity=0.180  Sum_probs=55.0

Q ss_pred             CCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcC-----CCCCccccccccccChhhHHHhhh
Q 008149          441 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSG-----QTGELVQIEDIQALTTKKFESLIH  515 (576)
Q Consensus       441 ~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn-----~~g~l~~~~DI~~lt~~~Ie~l~~  515 (576)
                      +++.+||+|-||.|++...+.+.. ...-+.+||+|+...+..+.++...+     .+...++.+|+.+.    +..   
T Consensus        76 ~~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~----l~~---  147 (314)
T 1uir_A           76 PEPKRVLIVGGGEGATLREVLKHP-TVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAY----LER---  147 (314)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTTST-TCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHH----HHH---
T ss_pred             CCCCeEEEEcCCcCHHHHHHHhcC-CCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHH----HHh---
Confidence            456799999999999998887652 22458899999999988888764311     12223455666542    111   


Q ss_pred             ccCCccEEEecCCC
Q 008149          516 KLGSIDFVICQNSV  529 (576)
Q Consensus       516 ~~g~~DLVIGGpPC  529 (576)
                      ..+.+|+|+..+|.
T Consensus       148 ~~~~fD~Ii~d~~~  161 (314)
T 1uir_A          148 TEERYDVVIIDLTD  161 (314)
T ss_dssp             CCCCEEEEEEECCC
T ss_pred             cCCCccEEEECCCC
Confidence            13579999987664

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}

Probab=90.11  E-value=0.8  Score=43.70  Aligned_cols=80  Identities=23%  Similarity=0.216  Sum_probs=54.6

Q ss_pred             CCCcccccCCCCChhHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHhhhcCCCC-CccccccccccChhhHHHhhhccCC
Q 008149          442 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGS  519 (576)
Q Consensus       442 ~~l~VLsLFSGiGG~slGL~~a-Gi~~k~vvavEid~~a~~t~k~~~~~tn~~g-~l~~~~DI~~lt~~~Ie~l~~~~g~  519 (576)
                      .+.+|||+-||.|++...+.+. |.   .|+++|+++......+......+... ..+..+|+.++...        -+.
T Consensus        61 ~~~~vLDiGcG~G~~~~~l~~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~--------~~~  129 (273)
T 3bus_A           61 SGDRVLDVGCGIGKPAVRLATARDV---RVTGISISRPQVNQANARATAAGLANRVTFSYADAMDLPFE--------DAS  129 (273)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHHSCC---EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSC--------TTC
T ss_pred             CCCEEEEeCCCCCHHHHHHHHhcCC---EEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECccccCCCC--------CCC
Confidence            4679999999999999888764 54   47899999998877776654432221 23456777665411        147


Q ss_pred             ccEEEecCCCCCc
Q 008149          520 IDFVICQNSVPQI  532 (576)
Q Consensus       520 ~DLVIGGpPCQ~F  532 (576)
                      ||+|+....-+.+
T Consensus       130 fD~v~~~~~l~~~  142 (273)
T 3bus_A          130 FDAVWALESLHHM  142 (273)
T ss_dssp             EEEEEEESCTTTS
T ss_pred             ccEEEEechhhhC
Confidence            9999976554433

>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*

Probab=90.10  E-value=0.22  Score=50.69  Aligned_cols=80  Identities=24%  Similarity=0.273  Sum_probs=52.9

Q ss_pred             CCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhc--C--CCCCccccccccccChhhHHHhhhc
Q 008149          441 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESS--G--QTGELVQIEDIQALTTKKFESLIHK  516 (576)
Q Consensus       441 ~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~t--n--~~g~l~~~~DI~~lt~~~Ie~l~~~  516 (576)
                      +.+.+|||+-||.|++...+.+.. +...|.+||+|+.+.+..+.+....  .  .+...++.+|+.+.    ++   ..
T Consensus       115 ~~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~----l~---~~  186 (321)
T 2pt6_A          115 KEPKNVLVVGGGDGGIIRELCKYK-SVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKF----LE---NV  186 (321)
T ss_dssp             SSCCEEEEEECTTCHHHHHHTTCT-TCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHH----HH---HC
T ss_pred             CCCCEEEEEcCCccHHHHHHHHcC-CCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHH----Hh---hc
Confidence            356789999999999998887652 1245889999999999888876431  0  11122345555432    11   11


Q ss_pred             cCCccEEEecCC
Q 008149          517 LGSIDFVICQNS  528 (576)
Q Consensus       517 ~g~~DLVIGGpP  528 (576)
                      .+.||+|+..++
T Consensus       187 ~~~fDvIi~d~~  198 (321)
T 2pt6_A          187 TNTYDVIIVDSS  198 (321)
T ss_dssp             CSCEEEEEEECC
T ss_pred             CCCceEEEECCc
Confidence            257999998764

>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A

Probab=89.66  E-value=0.34  Score=46.54  Aligned_cols=37  Identities=22%  Similarity=0.309  Sum_probs=30.5

Q ss_pred             hHHHHHHHhcCCCHHHHHHHHHHhCCCCChhhhhHhHhh
Q 008149           89 MEITLQLLEMGFSENQVSLAIEKFGSKTPISELADKIFS  127 (576)
Q Consensus        89 ~~k~~~L~~MGFseeEas~AI~r~G~da~i~eLvD~I~A  127 (576)
                      ++|+..|++|||++++|..|+.+++-|  ++.-++.++.
T Consensus       164 eekV~~l~~MGf~~~~a~~AL~~~~wd--~~~A~e~L~~  200 (201)
T 3k9o_A          164 TKKIENLCAMGFDRNAVIVALSSKSWD--VETATELLLS  200 (201)
T ss_dssp             HHHHHHHHTTTCCHHHHHHHHHHTTTC--HHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHcCCC--HHHHHHHHhc
Confidence            578999999999999999999999886  5555555543

>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*

Probab=89.65  E-value=0.33  Score=48.72  Aligned_cols=82  Identities=18%  Similarity=0.181  Sum_probs=53.3

Q ss_pred             CCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhh---c-CCCCCccccccccccChhhHHHhhhc
Q 008149          441 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWES---S-GQTGELVQIEDIQALTTKKFESLIHK  516 (576)
Q Consensus       441 ~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~---t-n~~g~l~~~~DI~~lt~~~Ie~l~~~  516 (576)
                      +++.+||++-||.|++...+.+.. ....|.+||+|+...+..+.++..   . ..+...++.+|+.++...    .  .
T Consensus        94 ~~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~----~--~  166 (304)
T 3bwc_A           94 PKPERVLIIGGGDGGVLREVLRHG-TVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQ----T--P  166 (304)
T ss_dssp             SSCCEEEEEECTTSHHHHHHHTCT-TCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHS----S--C
T ss_pred             CCCCeEEEEcCCCCHHHHHHHhCC-CCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHh----c--c
Confidence            456899999999999999887762 234588999999998888876531   1 011222445665433110    0  1


Q ss_pred             cCCccEEEecCCC
Q 008149          517 LGSIDFVICQNSV  529 (576)
Q Consensus       517 ~g~~DLVIGGpPC  529 (576)
                      .+.||+|+...|.
T Consensus       167 ~~~fDvIi~d~~~  179 (304)
T 3bwc_A          167 DNTYDVVIIDTTD  179 (304)
T ss_dssp             TTCEEEEEEECC-
T ss_pred             CCceeEEEECCCC
Confidence            2579999986543

>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1

Probab=89.45  E-value=0.31  Score=38.27  Aligned_cols=34  Identities=21%  Similarity=0.317  Sum_probs=29.4

Q ss_pred             HHHHHhcCCCHHHHHHHHHHhCCCCChhhhhHhHh
Q 008149           92 TLQLLEMGFSENQVSLAIEKFGSKTPISELADKIF  126 (576)
Q Consensus        92 ~~~L~~MGFseeEas~AI~r~G~da~i~eLvD~I~  126 (576)
                      +..|++|||+++-|..|+.+-|.. .|+.-.|.|.
T Consensus        13 lq~L~eMGFd~erae~Alk~Tg~~-Gle~AmewL~   46 (54)
T 2cos_A           13 LQELVNAGCDQEMAGRALKQTGSR-SIEAALEYIS   46 (54)
T ss_dssp             HHHHHHHHCCHHHHHHHHHHHTSC-CHHHHHHHHH
T ss_pred             HHHHHHcCCCHHHHHHHHHHhCcc-cHHHHHHHHH
Confidence            458999999999999999999986 7887777764

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33

Probab=89.44  E-value=0.64  Score=44.49  Aligned_cols=71  Identities=13%  Similarity=0.103  Sum_probs=49.3

Q ss_pred             CCCCcccccCCCCChhHHHHHHc--CCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccC
Q 008149          441 PGGLTMLSVFSGIGGAEVTLHRL--GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLG  518 (576)
Q Consensus       441 ~~~l~VLsLFSGiGG~slGL~~a--Gi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g  518 (576)
                      +.+.+|||+-||.|.+...+.+.  |.   .|+++|+++...+..+...     ....+...|+.++..        ..+
T Consensus        84 ~~~~~vLdiG~G~G~~~~~l~~~~~~~---~v~~vD~s~~~~~~a~~~~-----~~~~~~~~d~~~~~~--------~~~  147 (269)
T 1p91_A           84 DKATAVLDIGCGEGYYTHAFADALPEI---TTFGLDVSKVAIKAAAKRY-----PQVTFCVASSHRLPF--------SDT  147 (269)
T ss_dssp             TTCCEEEEETCTTSTTHHHHHHTCTTS---EEEEEESCHHHHHHHHHHC-----TTSEEEECCTTSCSB--------CTT
T ss_pred             CCCCEEEEECCCCCHHHHHHHHhCCCC---eEEEEeCCHHHHHHHHHhC-----CCcEEEEcchhhCCC--------CCC
Confidence            35678999999999999888876  54   3789999999877766532     122345567665531        114


Q ss_pred             CccEEEecC
Q 008149          519 SIDFVICQN  527 (576)
Q Consensus       519 ~~DLVIGGp  527 (576)
                      .||+|+...
T Consensus       148 ~fD~v~~~~  156 (269)
T 1p91_A          148 SMDAIIRIY  156 (269)
T ss_dssp             CEEEEEEES
T ss_pred             ceeEEEEeC
Confidence            688888644

>2oo9_A E3 ubiquitin-protein ligase CBL; alpha-helical domain, homodimer; 2.10A {Homo sapiens}

Probab=89.39  E-value=0.32  Score=36.96  Aligned_cols=27  Identities=15%  Similarity=0.162  Sum_probs=24.9

Q ss_pred             hHHHHHHHhcCCCHHHHHHHHHHhCCC
Q 008149           89 MEITLQLLEMGFSENQVSLAIEKFGSK  115 (576)
Q Consensus        89 ~~k~~~L~~MGFseeEas~AI~r~G~d  115 (576)
                      ++.+..|+.|||+.+.|..|+..+..|
T Consensus         5 e~~I~~L~s~Gf~~~~~~rAL~ia~Nn   31 (46)
T 2oo9_A            5 SSEIENLMSQGYSYQDIQKALVIAQNN   31 (46)
T ss_dssp             HHHHHHHHHTTBCHHHHHHHHHHTTTC
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHhhcc
Confidence            457889999999999999999999988

>2oo9_A E3 ubiquitin-protein ligase CBL; alpha-helical domain, homodimer; 2.10A {Homo sapiens}

Probab=89.27  E-value=0.59  Score=35.53  Aligned_cols=38  Identities=11%  Similarity=0.107  Sum_probs=29.5

Q ss_pred             hhhhHHHhcCCCChHHHHHHHHHhCCCCcHHHHHHHHHHh
Q 008149           17 IEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAA   56 (576)
Q Consensus        17 s~~r~~li~MGFs~e~V~kAIqe~Ge~~~~~~Ile~Ll~~   56 (576)
                      +.....|++|||+.+.|.+|+..-.. | ++.--+.|+..
T Consensus         5 e~~I~~L~s~Gf~~~~~~rAL~ia~N-n-ie~A~nIL~ef   42 (46)
T 2oo9_A            5 SSEIENLMSQGYSYQDIQKALVIAQN-N-IEMAKNILREF   42 (46)
T ss_dssp             HHHHHHHHHTTBCHHHHHHHHHHTTT-C-HHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHhhc-c-HHHHHHHHHHh
Confidence            34568899999999999999999554 5 77766666643

>4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A*

Probab=89.26  E-value=1  Score=46.98  Aligned_cols=88  Identities=15%  Similarity=0.128  Sum_probs=58.1

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCC-ccccccccccChhhHHHhhhccCCc
Q 008149          442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGE-LVQIEDIQALTTKKFESLIHKLGSI  520 (576)
Q Consensus       442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~-l~~~~DI~~lt~~~Ie~l~~~~g~~  520 (576)
                      .+.+|||+.||-||=+..+-.++-. ..|+|+|+++.-.+.++.+-........ ....-.|...+...+..+  ..+.|
T Consensus       148 pg~~VLD~CAaPGGKT~~la~~~~~-~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~~~~~~~--~~~~f  224 (359)
T 4fzv_A          148 PGDIVLDLCAAPGGKTLALLQTGCC-RNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKWGEL--EGDTY  224 (359)
T ss_dssp             TTEEEEESSCTTCHHHHHHHHTTCE-EEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCCGGGHHHH--STTCE
T ss_pred             CCCEEEEecCCccHHHHHHHHhcCC-CcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCchhhcchh--ccccC
Confidence            3678999999999999888887743 4588999999988888776543311100 000112333444333322  23579


Q ss_pred             cEEEecCCCCCc
Q 008149          521 DFVICQNSVPQI  532 (576)
Q Consensus       521 DLVIGGpPCQ~F  532 (576)
                      |.|+-=+||.+-
T Consensus       225 D~VLlDaPCSg~  236 (359)
T 4fzv_A          225 DRVLVDVPCTTD  236 (359)
T ss_dssp             EEEEEECCCCCH
T ss_pred             CEEEECCccCCC
Confidence            999999999873

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}

Probab=89.25  E-value=0.7  Score=44.68  Aligned_cols=71  Identities=14%  Similarity=0.187  Sum_probs=52.0

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 008149          442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  521 (576)
Q Consensus       442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~D  521 (576)
                      .+.+|||+=||.|.+...+...|.   .|+++|+++......+..+     +...+..+|+.++..         .+.||
T Consensus        57 ~~~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~~~~a~~~~-----~~~~~~~~d~~~~~~---------~~~fD  119 (279)
T 3ccf_A           57 PGEFILDLGCGTGQLTEKIAQSGA---EVLGTDNAATMIEKARQNY-----PHLHFDVADARNFRV---------DKPLD  119 (279)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHC-----TTSCEEECCTTTCCC---------SSCEE
T ss_pred             CCCEEEEecCCCCHHHHHHHhCCC---eEEEEECCHHHHHHHHhhC-----CCCEEEECChhhCCc---------CCCcC
Confidence            457899999999999999988775   3789999999887776543     122355677776542         14689


Q ss_pred             EEEecCCC
Q 008149          522 FVICQNSV  529 (576)
Q Consensus       522 LVIGGpPC  529 (576)
                      +|+....-
T Consensus       120 ~v~~~~~l  127 (279)
T 3ccf_A          120 AVFSNAML  127 (279)
T ss_dssp             EEEEESCG
T ss_pred             EEEEcchh
Confidence            99876543

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}

Probab=89.24  E-value=0.69  Score=43.85  Aligned_cols=49  Identities=10%  Similarity=0.237  Sum_probs=37.8

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhc
Q 008149          442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESS  490 (576)
Q Consensus       442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~t  490 (576)
                      .+.+|||+-||.|.....+.+..-.-..|+++|+++...+..+.++...
T Consensus        60 ~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~  108 (239)
T 2hnk_A           60 GAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKEN  108 (239)
T ss_dssp             TCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHT
T ss_pred             CcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHc
Confidence            3568999999999999988776210124789999999988888877544

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}

Probab=89.21  E-value=0.83  Score=40.34  Aligned_cols=70  Identities=14%  Similarity=0.130  Sum_probs=48.8

Q ss_pred             CCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 008149          441 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI  520 (576)
Q Consensus       441 ~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~  520 (576)
                      ..+.+|||+-||.|.+...+.+.+.   .+.++|+++......+...     +...+..+| ..+          ..+.+
T Consensus        16 ~~~~~vLDiG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~-----~~v~~~~~d-~~~----------~~~~~   76 (170)
T 3i9f_A           16 GKKGVIVDYGCGNGFYCKYLLEFAT---KLYCIDINVIALKEVKEKF-----DSVITLSDP-KEI----------PDNSV   76 (170)
T ss_dssp             SCCEEEEEETCTTCTTHHHHHTTEE---EEEEECSCHHHHHHHHHHC-----TTSEEESSG-GGS----------CTTCE
T ss_pred             CCCCeEEEECCCCCHHHHHHHhhcC---eEEEEeCCHHHHHHHHHhC-----CCcEEEeCC-CCC----------CCCce
Confidence            3467899999999999999998873   5889999999887776541     122233445 111          12579


Q ss_pred             cEEEecCCC
Q 008149          521 DFVICQNSV  529 (576)
Q Consensus       521 DLVIGGpPC  529 (576)
                      |+|+.....
T Consensus        77 D~v~~~~~l   85 (170)
T 3i9f_A           77 DFILFANSF   85 (170)
T ss_dssp             EEEEEESCS
T ss_pred             EEEEEccch
Confidence            999965443

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*

Probab=89.14  E-value=0.83  Score=44.17  Aligned_cols=76  Identities=20%  Similarity=0.241  Sum_probs=49.6

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCC----CCccccccccccChhhHHHhhhcc
Q 008149          442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQT----GELVQIEDIQALTTKKFESLIHKL  517 (576)
Q Consensus       442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~----g~l~~~~DI~~lt~~~Ie~l~~~~  517 (576)
                      .+.+|||+-||.|.+...|...|.   .|+++|+++......+.........    ...+..+|+.++..+    + ...
T Consensus        57 ~~~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~----~-~~~  128 (293)
T 3thr_A           57 GCHRVLDVACGTGVDSIMLVEEGF---SVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKD----V-PAG  128 (293)
T ss_dssp             TCCEEEETTCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHH----S-CCT
T ss_pred             CCCEEEEecCCCCHHHHHHHHCCC---eEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChhhCccc----c-ccC
Confidence            457899999999999999999987   3789999999887776543111110    111234555543311    0 112


Q ss_pred             CCccEEEe
Q 008149          518 GSIDFVIC  525 (576)
Q Consensus       518 g~~DLVIG  525 (576)
                      +.||+|+.
T Consensus       129 ~~fD~V~~  136 (293)
T 3thr_A          129 DGFDAVIC  136 (293)
T ss_dssp             TCEEEEEE
T ss_pred             CCeEEEEE
Confidence            58999995

>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}

Probab=89.12  E-value=0.49  Score=42.75  Aligned_cols=77  Identities=12%  Similarity=0.090  Sum_probs=46.4

Q ss_pred             CCCCcccccCCCCChhHHHHHHc-CCc-------eeeEEEeeCCHHHHHHHHHHhhhcCCCCCccc-cccccccChh-hH
Q 008149          441 PGGLTMLSVFSGIGGAEVTLHRL-GIK-------LKGVISIETSETNRRILKRWWESSGQTGELVQ-IEDIQALTTK-KF  510 (576)
Q Consensus       441 ~~~l~VLsLFSGiGG~slGL~~a-Gi~-------~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~-~~DI~~lt~~-~I  510 (576)
                      +.+.+||||-||.|++...+.+. |-.       -..|+++|+++...           .....+. .+|+.+.... .+
T Consensus        21 ~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~~-----------~~~~~~~~~~d~~~~~~~~~~   89 (196)
T 2nyu_A           21 RPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIFP-----------LEGATFLCPADVTDPRTSQRI   89 (196)
T ss_dssp             CTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCCC-----------CTTCEEECSCCTTSHHHHHHH
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhccc-----------CCCCeEEEeccCCCHHHHHHH
Confidence            34689999999999999988776 421       02478999998530           1122244 5677654321 11


Q ss_pred             HHhhhccCCccEEEecCCC
Q 008149          511 ESLIHKLGSIDFVICQNSV  529 (576)
Q Consensus       511 e~l~~~~g~~DLVIGGpPC  529 (576)
                      .... .-+.||+|+...++
T Consensus        90 ~~~~-~~~~fD~V~~~~~~  107 (196)
T 2nyu_A           90 LEVL-PGRRADVILSDMAP  107 (196)
T ss_dssp             HHHS-GGGCEEEEEECCCC
T ss_pred             HHhc-CCCCCcEEEeCCCC
Confidence            1111 11379999976543

>1ixs_A Holliday junction DNA helicase RUVA; heterodimeric protein complex, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.20A {Thermus thermophilus} SCOP: a.5.1.1

Probab=88.89  E-value=0.52  Score=37.61  Aligned_cols=37  Identities=22%  Similarity=0.364  Sum_probs=30.1

Q ss_pred             hHHHHHHHhcCCCHHHHHHHHHHh---CCCCChhhhhHhH
Q 008149           89 MEITLQLLEMGFSENQVSLAIEKF---GSKTPISELADKI  125 (576)
Q Consensus        89 ~~k~~~L~~MGFseeEas~AI~r~---G~da~i~eLvD~I  125 (576)
                      .|-+..|+.+||++.||..|+.++   ..+.++++++-..
T Consensus        18 ~ea~~AL~aLGY~~~ea~kav~~v~~~~~~~~~e~lIr~A   57 (62)
T 1ixs_A           18 EEAVMALAALGFKEAQARAVVLDLLAQNPKARAQDLIKEA   57 (62)
T ss_dssp             HHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCCHHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence            356778999999999999999998   4567888876543

>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}

Probab=88.65  E-value=0.75  Score=44.05  Aligned_cols=83  Identities=14%  Similarity=0.076  Sum_probs=56.0

Q ss_pred             CCCcccccCCCCChhHHHHHHc---CCceeeEEEeeCCHHHHHHHHHHhhhcCCCC-CccccccccccChhhHHHhhhc-
Q 008149          442 GGLTMLSVFSGIGGAEVTLHRL---GIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHK-  516 (576)
Q Consensus       442 ~~l~VLsLFSGiGG~slGL~~a---Gi~~k~vvavEid~~a~~t~k~~~~~tn~~g-~l~~~~DI~~lt~~~Ie~l~~~-  516 (576)
                      .+-+||++-||.|+..+.+.++   +.   .++++|+++......+.++...+... ..++.+|..++    ++.+... 
T Consensus        70 ~~~~VLeiG~G~G~~~~~la~~~~~~~---~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~----l~~l~~~~  142 (237)
T 3c3y_A           70 NAKKTIEVGVFTGYSLLLTALSIPDDG---KITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLA----LDNLLQGQ  142 (237)
T ss_dssp             TCCEEEEECCTTSHHHHHHHHHSCTTC---EEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHH----HHHHHHST
T ss_pred             CCCEEEEeCCCCCHHHHHHHHhCCCCC---EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHH----HHHHHhcc
Confidence            3468999999999999888775   43   47899999999999998887653221 12344555432    1222111 


Q ss_pred             --cCCccEEEecCCCCC
Q 008149          517 --LGSIDFVICQNSVPQ  531 (576)
Q Consensus       517 --~g~~DLVIGGpPCQ~  531 (576)
                        .+.||+|+-..+|..
T Consensus       143 ~~~~~fD~I~~d~~~~~  159 (237)
T 3c3y_A          143 ESEGSYDFGFVDADKPN  159 (237)
T ss_dssp             TCTTCEEEEEECSCGGG
T ss_pred             CCCCCcCEEEECCchHH
Confidence              257999998776654

>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1

Probab=88.61  E-value=0.44  Score=38.89  Aligned_cols=44  Identities=20%  Similarity=0.148  Sum_probs=35.9

Q ss_pred             hhhhhhhhHHHHHHHhcCCCHHHH-HHHHHHhCCCCChhhhhHhHhhcc
Q 008149           82 DETLYGTMEITLQLLEMGFSENQV-SLAIEKFGSKTPISELADKIFSGQ  129 (576)
Q Consensus        82 ~e~~~~~~~k~~~L~~MGFseeEa-s~AI~r~G~da~i~eLvD~I~Aaq  129 (576)
                      +|..|+  .++.+|..|||.++++ ..||..++-|  |+--||.++...
T Consensus        15 pe~~y~--~ql~qL~~MGF~d~~an~~AL~at~Gn--ve~Ave~L~~~~   59 (67)
T 2dna_A           15 PEVRFS--KEMECLQAMGFVNYNANLQALIATDGD--TNAAIYKLKSSQ   59 (67)
T ss_dssp             HHHHTH--HHHHHHHHHTCCCHHHHHHHHHHTTSC--HHHHHHHHHHCC
T ss_pred             hHHHHH--HHHHHHHHcCCCcHHHHHHHHHHcCCC--HHHHHHHHHhCC
Confidence            555554  5788999999988877 8999999965  888899998876

>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}

Probab=88.50  E-value=0.72  Score=42.63  Aligned_cols=78  Identities=18%  Similarity=0.177  Sum_probs=51.8

Q ss_pred             CCcccccCCCCChhHHHHHHc---CCceeeEEEeeCCHHHHHHHHHHhhhcCCCC-CccccccccccChhhHHHhhhccC
Q 008149          443 GLTMLSVFSGIGGAEVTLHRL---GIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLG  518 (576)
Q Consensus       443 ~l~VLsLFSGiGG~slGL~~a---Gi~~k~vvavEid~~a~~t~k~~~~~tn~~g-~l~~~~DI~~lt~~~Ie~l~~~~g  518 (576)
                      +.+|||+-||.|.....+.++   |.   .|+++|+++...+..+.++...+... ..++.+|..++    +.   ...+
T Consensus        57 ~~~vLdiG~G~G~~~~~la~~~~~~~---~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~----~~---~~~~  126 (210)
T 3c3p_A           57 PQLVVVPGDGLGCASWWFARAISISS---RVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGI----AA---GQRD  126 (210)
T ss_dssp             CSEEEEESCGGGHHHHHHHTTSCTTC---EEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHH----HT---TCCS
T ss_pred             CCEEEEEcCCccHHHHHHHHhCCCCC---EEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHH----hc---cCCC
Confidence            468999999999999988765   43   47899999999988888776442211 11334444321    11   1124


Q ss_pred             CccEEEecCCCCC
Q 008149          519 SIDFVICQNSVPQ  531 (576)
Q Consensus       519 ~~DLVIGGpPCQ~  531 (576)
                       ||+|+...++..
T Consensus       127 -fD~v~~~~~~~~  138 (210)
T 3c3p_A          127 -IDILFMDCDVFN  138 (210)
T ss_dssp             -EEEEEEETTTSC
T ss_pred             -CCEEEEcCChhh
Confidence             999998766544

>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17

Probab=88.43  E-value=0.41  Score=48.74  Aligned_cols=80  Identities=16%  Similarity=0.168  Sum_probs=53.5

Q ss_pred             CCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcC----CCCCccccccccccChhhHHHhhhc
Q 008149          441 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSG----QTGELVQIEDIQALTTKKFESLIHK  516 (576)
Q Consensus       441 ~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn----~~g~l~~~~DI~~lt~~~Ie~l~~~  516 (576)
                      +++.+||+|-||.|++...+.+.. +...|.+||+|+...+..+.++...+    .+...++.+|+.+.    +.   ..
T Consensus       107 ~~~~~VLdIG~G~G~~~~~l~~~~-~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~----l~---~~  178 (314)
T 2b2c_A          107 PDPKRVLIIGGGDGGILREVLKHE-SVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEF----LK---NH  178 (314)
T ss_dssp             SSCCEEEEESCTTSHHHHHHTTCT-TCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHH----HH---HC
T ss_pred             CCCCEEEEEcCCcCHHHHHHHHcC-CCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHH----HH---hc
Confidence            456789999999999998887652 23458899999999998888775321    11122344555432    11   12


Q ss_pred             cCCccEEEecCC
Q 008149          517 LGSIDFVICQNS  528 (576)
Q Consensus       517 ~g~~DLVIGGpP  528 (576)
                      .+.+|+|+..++
T Consensus       179 ~~~fD~Ii~d~~  190 (314)
T 2b2c_A          179 KNEFDVIITDSS  190 (314)
T ss_dssp             TTCEEEEEECCC
T ss_pred             CCCceEEEEcCC
Confidence            357999997664

>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*

Probab=88.10  E-value=0.28  Score=46.39  Aligned_cols=45  Identities=16%  Similarity=0.212  Sum_probs=37.9

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhh
Q 008149          442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWE  488 (576)
Q Consensus       442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~  488 (576)
                      .+.+|||+-||.|.+...+.+.|.  ..|+++|+++.+....+.+..
T Consensus        56 ~~~~vLDlGcG~G~~~~~l~~~~~--~~v~gvD~s~~~l~~a~~~~~  100 (265)
T 2i62_A           56 KGELLIDIGSGPTIYQLLSACESF--TEIIVSDYTDQNLWELQKWLK  100 (265)
T ss_dssp             CEEEEEEESCTTCCGGGTTGGGTE--EEEEEEESCHHHHHHHHHHHT
T ss_pred             CCCEEEEECCCccHHHHHHhhccc--CeEEEecCCHHHHHHHHHHHh
Confidence            457899999999999988888886  458899999999888877654

>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}

Probab=87.84  E-value=1  Score=40.91  Aligned_cols=55  Identities=9%  Similarity=-0.055  Sum_probs=36.6

Q ss_pred             CCCCcccccCCCCChhHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccC
Q 008149          441 PGGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALT  506 (576)
Q Consensus       441 ~~~l~VLsLFSGiGG~slGL~~a-Gi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt  506 (576)
                      +.+.+||||=||.|+++..+.+. +-.-..|+++|+++.+.           .++..+..+|+.+..
T Consensus        21 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~~-----------~~~v~~~~~d~~~~~   76 (201)
T 2plw_A           21 KKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMDP-----------IPNVYFIQGEIGKDN   76 (201)
T ss_dssp             CTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCCC-----------CTTCEEEECCTTTTS
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccCC-----------CCCceEEEccccchh
Confidence            45678999999999999888764 20012478999998531           122234567776654

>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}

Probab=87.79  E-value=0.44  Score=46.42  Aligned_cols=49  Identities=8%  Similarity=-0.048  Sum_probs=40.7

Q ss_pred             CCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhc
Q 008149          441 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESS  490 (576)
Q Consensus       441 ~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~t  490 (576)
                      +..-+||||=||.|.+++.+..+.=.. .++++|+|+.+..+.+++....
T Consensus        48 ~~~~~VLDlGCG~GplAl~l~~~~p~a-~~~A~Di~~~~leiar~~~~~~   96 (200)
T 3fzg_A           48 KHVSSILDFGCGFNPLALYQWNENEKI-IYHAYDIDRAEIAFLSSIIGKL   96 (200)
T ss_dssp             CCCSEEEEETCTTHHHHHHHHCSSCCC-EEEEECSCHHHHHHHHHHHHHS
T ss_pred             CCCCeEEEecCCCCHHHHHHHhcCCCC-EEEEEeCCHHHHHHHHHHHHhc
Confidence            557899999999999999998774333 6899999999999999887543

>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59

Probab=87.67  E-value=0.25  Score=50.45  Aligned_cols=91  Identities=16%  Similarity=0.089  Sum_probs=58.0

Q ss_pred             chhhhccccccCCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChh
Q 008149          429 LGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTK  508 (576)
Q Consensus       429 v~~~lsvLK~~f~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~  508 (576)
                      +...|++++. | ++-.+||||+|.|.+.+-+-+ |.  .-++.||.++.+.++++.+....  ....++..|...    
T Consensus        80 l~~yf~~l~~-~-n~~~~LDlfaGSGaLgiEaLS-~~--d~~vfvE~~~~a~~~L~~Nl~~~--~~~~V~~~D~~~----  148 (283)
T 2oo3_A           80 FLEYISVIKQ-I-NLNSTLSYYPGSPYFAINQLR-SQ--DRLYLCELHPTEYNFLLKLPHFN--KKVYVNHTDGVS----  148 (283)
T ss_dssp             GHHHHHHHHH-H-SSSSSCCEEECHHHHHHHHSC-TT--SEEEEECCSHHHHHHHTTSCCTT--SCEEEECSCHHH----
T ss_pred             HHHHHHHHHH-h-cCCCceeEeCCcHHHHHHHcC-CC--CeEEEEeCCHHHHHHHHHHhCcC--CcEEEEeCcHHH----
Confidence            4566777777 3 456799999999997666555 43  45889999999999998765321  112233344321    


Q ss_pred             hHHHhhhccCCccEEEecCCCC
Q 008149          509 KFESLIHKLGSIDFVICQNSVP  530 (576)
Q Consensus       509 ~Ie~l~~~~g~~DLVIGGpPCQ  530 (576)
                      -+..+......+|||.-=||=.
T Consensus       149 ~L~~l~~~~~~fdLVfiDPPYe  170 (283)
T 2oo3_A          149 KLNALLPPPEKRGLIFIDPSYE  170 (283)
T ss_dssp             HHHHHCSCTTSCEEEEECCCCC
T ss_pred             HHHHhcCCCCCccEEEECCCCC
Confidence            1222212223599999999843

>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A

Probab=87.49  E-value=0.76  Score=45.28  Aligned_cols=82  Identities=12%  Similarity=0.009  Sum_probs=55.7

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 008149          442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  521 (576)
Q Consensus       442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~D  521 (576)
                      .+-+|||+=||.|.++. +.+ |-+ .-|+++|+|+.....++......  ....++.+|+.+++-.++..   ..+..|
T Consensus        21 ~~~~VLEIG~G~G~lt~-l~~-~~~-~~v~avEid~~~~~~a~~~~~~~--~~v~~i~~D~~~~~~~~~~~---~~~~~~   92 (252)
T 1qyr_A           21 KGQAMVEIGPGLAALTE-PVG-ERL-DQLTVIELDRDLAARLQTHPFLG--PKLTIYQQDAMTFNFGELAE---KMGQPL   92 (252)
T ss_dssp             TTCCEEEECCTTTTTHH-HHH-TTC-SCEEEECCCHHHHHHHHTCTTTG--GGEEEECSCGGGCCHHHHHH---HHTSCE
T ss_pred             CcCEEEEECCCCcHHHH-hhh-CCC-CeEEEEECCHHHHHHHHHHhccC--CceEEEECchhhCCHHHhhc---ccCCce
Confidence            45689999999999999 876 322 12789999999988887543211  12335679998887543310   013468


Q ss_pred             EEEecCCCCC
Q 008149          522 FVICQNSVPQ  531 (576)
Q Consensus       522 LVIGGpPCQ~  531 (576)
                      +|+|..|=+-
T Consensus        93 ~vvsNlPY~i  102 (252)
T 1qyr_A           93 RVFGNLPYNI  102 (252)
T ss_dssp             EEEEECCTTT
T ss_pred             EEEECCCCCc
Confidence            9999998543

>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}

Probab=87.39  E-value=1.4  Score=44.28  Aligned_cols=47  Identities=9%  Similarity=0.013  Sum_probs=36.9

Q ss_pred             CCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhh
Q 008149          441 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWES  489 (576)
Q Consensus       441 ~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~  489 (576)
                      +.+.+||||=||.|+....+...|.  ..|+++|+++.+.+.-+..+..
T Consensus        47 ~~~~~VLDlGCG~G~~l~~~~~~~~--~~v~GiD~S~~~l~~A~~~~~~   93 (302)
T 2vdw_A           47 SNKRKVLAIDFGNGADLEKYFYGEI--ALLVATDPDADAIARGNERYNK   93 (302)
T ss_dssp             CSCCEEEETTCTTTTTHHHHHHTTC--SEEEEEESCHHHHHHHHHHHHH
T ss_pred             CCCCeEEEEecCCcHhHHHHHhcCC--CeEEEEECCHHHHHHHHHHHHh
Confidence            5578999999999987666666664  3488999999998888776543

>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A

Probab=87.29  E-value=0.44  Score=49.00  Aligned_cols=81  Identities=21%  Similarity=0.235  Sum_probs=53.3

Q ss_pred             CCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhc----CCCCCccccccccccChhhHHHhhhc
Q 008149          441 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESS----GQTGELVQIEDIQALTTKKFESLIHK  516 (576)
Q Consensus       441 ~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~t----n~~g~l~~~~DI~~lt~~~Ie~l~~~  516 (576)
                      +.+.+||+|-||.|++...+.+.. ....|.+||+|+...+..+.++...    ..+...++.+|+.+.    +..+  .
T Consensus       119 ~~~~~VLdIG~G~G~~a~~la~~~-~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~----l~~~--~  191 (334)
T 1xj5_A          119 PNPKKVLVIGGGDGGVLREVARHA-SIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAF----LKNA--A  191 (334)
T ss_dssp             SCCCEEEEETCSSSHHHHHHTTCT-TCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHH----HHTS--C
T ss_pred             CCCCEEEEECCCccHHHHHHHHcC-CCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHH----HHhc--c
Confidence            456789999999999999887762 2345889999999999888876431    011222445665432    1110  1


Q ss_pred             cCCccEEEecCC
Q 008149          517 LGSIDFVICQNS  528 (576)
Q Consensus       517 ~g~~DLVIGGpP  528 (576)
                      .+.||+|+..++
T Consensus       192 ~~~fDlIi~d~~  203 (334)
T 1xj5_A          192 EGSYDAVIVDSS  203 (334)
T ss_dssp             TTCEEEEEECCC
T ss_pred             CCCccEEEECCC
Confidence            257999997543

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}

Probab=87.01  E-value=0.4  Score=46.14  Aligned_cols=73  Identities=23%  Similarity=0.199  Sum_probs=50.5

Q ss_pred             CCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 008149          441 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI  520 (576)
Q Consensus       441 ~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~  520 (576)
                      +.+.+|||+=||.|.+...|.+.|.+   |+++|+++......+.      .....+..+|+.++...        .+.|
T Consensus        33 ~~~~~vLDiGcG~G~~~~~l~~~~~~---v~gvD~s~~~~~~a~~------~~~~~~~~~d~~~~~~~--------~~~f   95 (261)
T 3ege_A           33 PKGSVIADIGAGTGGYSVALANQGLF---VYAVEPSIVMRQQAVV------HPQVEWFTGYAENLALP--------DKSV   95 (261)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHTTTCE---EEEECSCHHHHHSSCC------CTTEEEECCCTTSCCSC--------TTCB
T ss_pred             CCCCEEEEEcCcccHHHHHHHhCCCE---EEEEeCCHHHHHHHHh------ccCCEEEECchhhCCCC--------CCCE
Confidence            35689999999999999999888763   6899999976543221      11223456777765421        2579


Q ss_pred             cEEEecCCCC
Q 008149          521 DFVICQNSVP  530 (576)
Q Consensus       521 DLVIGGpPCQ  530 (576)
                      |+|+......
T Consensus        96 D~v~~~~~l~  105 (261)
T 3ege_A           96 DGVISILAIH  105 (261)
T ss_dssp             SEEEEESCGG
T ss_pred             eEEEEcchHh
Confidence            9999766543

>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41

Probab=86.96  E-value=0.52  Score=43.91  Aligned_cols=71  Identities=25%  Similarity=0.307  Sum_probs=48.0

Q ss_pred             ccccccCCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHh
Q 008149          434 SVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESL  513 (576)
Q Consensus       434 svLK~~f~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l  513 (576)
                      ..|..+.| +.+|||+-||.|.+...+...       +++|+++...+..+..       +..+...|+.++..      
T Consensus        40 ~~l~~~~~-~~~vLDiG~G~G~~~~~l~~~-------~~vD~s~~~~~~a~~~-------~~~~~~~d~~~~~~------   98 (219)
T 1vlm_A           40 QAVKCLLP-EGRGVEIGVGTGRFAVPLKIK-------IGVEPSERMAEIARKR-------GVFVLKGTAENLPL------   98 (219)
T ss_dssp             HHHHHHCC-SSCEEEETCTTSTTHHHHTCC-------EEEESCHHHHHHHHHT-------TCEEEECBTTBCCS------
T ss_pred             HHHHHhCC-CCcEEEeCCCCCHHHHHHHHH-------hccCCCHHHHHHHHhc-------CCEEEEcccccCCC------
Confidence            34444455 789999999999998877554       6899999987776542       22245567765531      


Q ss_pred             hhccCCccEEEecC
Q 008149          514 IHKLGSIDFVICQN  527 (576)
Q Consensus       514 ~~~~g~~DLVIGGp  527 (576)
                        ..+.+|+|+...
T Consensus        99 --~~~~fD~v~~~~  110 (219)
T 1vlm_A           99 --KDESFDFALMVT  110 (219)
T ss_dssp             --CTTCEEEEEEES
T ss_pred             --CCCCeeEEEEcc
Confidence              114688888654

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}

Probab=86.89  E-value=1.2  Score=42.24  Aligned_cols=84  Identities=13%  Similarity=0.167  Sum_probs=53.0

Q ss_pred             CCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCC-CccccccccccChhhHHHhhhcc--CC
Q 008149          443 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKL--GS  519 (576)
Q Consensus       443 ~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g-~l~~~~DI~~lt~~~Ie~l~~~~--g~  519 (576)
                      +-+|||+-||.|...+.+.++--+-..++++|+++...+..+.++...+... ..+..+|..+.    +..+....  +.
T Consensus        73 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~----l~~l~~~~~~~~  148 (232)
T 3cbg_A           73 AKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALAT----LEQLTQGKPLPE  148 (232)
T ss_dssp             CCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHH----HHHHHTSSSCCC
T ss_pred             CCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHH----HHHHHhcCCCCC
Confidence            4689999999999998887751101247899999999888888876543211 11334554321    22221111  67


Q ss_pred             ccEEEecCCCC
Q 008149          520 IDFVICQNSVP  530 (576)
Q Consensus       520 ~DLVIGGpPCQ  530 (576)
                      ||+|+-..++.
T Consensus       149 fD~V~~d~~~~  159 (232)
T 3cbg_A          149 FDLIFIDADKR  159 (232)
T ss_dssp             EEEEEECSCGG
T ss_pred             cCEEEECCCHH
Confidence            99999766543

>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1

Probab=86.65  E-value=0.74  Score=37.58  Aligned_cols=40  Identities=18%  Similarity=0.061  Sum_probs=32.6

Q ss_pred             hhhhhHHHhcCCCC-hHHHHHHHHHhCCCCcHHHHHHHHHHhh
Q 008149           16 HIEKRASLLMMNFS-VNEVDFALDKLGKDAPVYELVDFITAAQ   57 (576)
Q Consensus        16 ~s~~r~~li~MGFs-~e~V~kAIqe~Ge~~~~~~Ile~Ll~~q   57 (576)
                      ......+|.+|||. .+.+.+|++..+. | ++.-+|+|+..+
T Consensus        19 y~~ql~qL~~MGF~d~~an~~AL~at~G-n-ve~Ave~L~~~~   59 (67)
T 2dna_A           19 FSKEMECLQAMGFVNYNANLQALIATDG-D-TNAAIYKLKSSQ   59 (67)
T ss_dssp             THHHHHHHHHHTCCCHHHHHHHHHHTTS-C-HHHHHHHHHHCC
T ss_pred             HHHHHHHHHHcCCCcHHHHHHHHHHcCC-C-HHHHHHHHHhCC
Confidence            45578899999995 5566999999875 5 899999999753

>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}

Probab=86.62  E-value=0.46  Score=48.91  Aligned_cols=77  Identities=14%  Similarity=0.220  Sum_probs=51.9

Q ss_pred             CCcccccCCCCChhHHHHHHc--CCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 008149          443 GLTMLSVFSGIGGAEVTLHRL--GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI  520 (576)
Q Consensus       443 ~l~VLsLFSGiGG~slGL~~a--Gi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~  520 (576)
                      .++||+|=||.|++...+.+.  +.+   +.+||||+...+..+.|+.....+...++.+|..++-    ..+  .-+.|
T Consensus        90 ~~rVLdIG~G~G~la~~la~~~p~~~---v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~~Da~~~l----~~~--~~~~f  160 (317)
T 3gjy_A           90 KLRITHLGGGACTMARYFADVYPQSR---NTVVELDAELARLSREWFDIPRAPRVKIRVDDARMVA----ESF--TPASR  160 (317)
T ss_dssp             GCEEEEESCGGGHHHHHHHHHSTTCE---EEEEESCHHHHHHHHHHSCCCCTTTEEEEESCHHHHH----HTC--CTTCE
T ss_pred             CCEEEEEECCcCHHHHHHHHHCCCcE---EEEEECCHHHHHHHHHhccccCCCceEEEECcHHHHH----hhc--cCCCC
Confidence            469999999999999888773  542   6789999999999888874321122234566665431    110  12579


Q ss_pred             cEEEecCC
Q 008149          521 DFVICQNS  528 (576)
Q Consensus       521 DLVIGGpP  528 (576)
                      |+||...+
T Consensus       161 DvIi~D~~  168 (317)
T 3gjy_A          161 DVIIRDVF  168 (317)
T ss_dssp             EEEEECCS
T ss_pred             CEEEECCC
Confidence            99997543

>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*

Probab=86.06  E-value=1.4  Score=47.51  Aligned_cols=80  Identities=10%  Similarity=0.128  Sum_probs=53.1

Q ss_pred             CCCcccccCCCCChhHHHHH-HcCCceeeEEEeeCCHHHHHHHHHHh-------hhcC--CCCCccccccccccChhhHH
Q 008149          442 GGLTMLSVFSGIGGAEVTLH-RLGIKLKGVISIETSETNRRILKRWW-------ESSG--QTGELVQIEDIQALTTKKFE  511 (576)
Q Consensus       442 ~~l~VLsLFSGiGG~slGL~-~aGi~~k~vvavEid~~a~~t~k~~~-------~~tn--~~g~l~~~~DI~~lt~~~Ie  511 (576)
                      .+-+||||=||.|.+.+.+. ..|.  .-|++||+++.+..+-+.+.       ...+  .....++.+|+.++.-..  
T Consensus       173 ~gd~VLDLGCGtG~l~l~lA~~~g~--~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi~GD~~~lp~~d--  248 (438)
T 3uwp_A          173 DDDLFVDLGSGVGQVVLQVAAATNC--KHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLSEEWRE--  248 (438)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHHCCC--SEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEEECCTTSHHHHH--
T ss_pred             CCCEEEEeCCCCCHHHHHHHHHCCC--CEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEECcccCCcccc--
Confidence            46789999999999998776 4565  34889999987665554421       1111  112335678998764321  


Q ss_pred             HhhhccCCccEEEecCCC
Q 008149          512 SLIHKLGSIDFVICQNSV  529 (576)
Q Consensus       512 ~l~~~~g~~DLVIGGpPC  529 (576)
                          .++.+|+|+..++|
T Consensus       249 ----~~~~aDVVf~Nn~~  262 (438)
T 3uwp_A          249 ----RIANTSVIFVNNFA  262 (438)
T ss_dssp             ----HHHTCSEEEECCTT
T ss_pred             ----ccCCccEEEEcccc
Confidence                12468999988776

>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A

Probab=85.96  E-value=0.47  Score=46.93  Aligned_cols=73  Identities=8%  Similarity=-0.030  Sum_probs=48.6

Q ss_pred             CCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhc----CCCCCccccccccccChhhHHHhhhc
Q 008149          441 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESS----GQTGELVQIEDIQALTTKKFESLIHK  516 (576)
Q Consensus       441 ~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~t----n~~g~l~~~~DI~~lt~~~Ie~l~~~  516 (576)
                      +++-+||++-||.|++...+.+.|   ..|.+||+|+...+..+.++...    ..+...++.+|..+.-          
T Consensus        71 ~~~~~VL~iG~G~G~~~~~ll~~~---~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~----------  137 (262)
T 2cmg_A           71 KELKEVLIVDGFDLELAHQLFKYD---THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDI----------  137 (262)
T ss_dssp             SCCCEEEEESSCCHHHHHHHTTSS---CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCC----------
T ss_pred             CCCCEEEEEeCCcCHHHHHHHhCC---CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHH----------
Confidence            456789999999999988777665   45889999999877766554320    0111223445554321          


Q ss_pred             cCCccEEEecC
Q 008149          517 LGSIDFVICQN  527 (576)
Q Consensus       517 ~g~~DLVIGGp  527 (576)
                       +.+|+|+...
T Consensus       138 -~~fD~Ii~d~  147 (262)
T 2cmg_A          138 -KKYDLIFCLQ  147 (262)
T ss_dssp             -CCEEEEEESS
T ss_pred             -hhCCEEEECC
Confidence             4689999764

>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}

Probab=85.88  E-value=0.52  Score=43.68  Aligned_cols=40  Identities=15%  Similarity=0.134  Sum_probs=31.8

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHH
Q 008149          442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRI  482 (576)
Q Consensus       442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t  482 (576)
                      .+.+|||+-||.|.+...|.+.+= -..|+++|+++.....
T Consensus        27 ~~~~vLDiGcG~G~~~~~la~~~p-~~~v~gvD~s~~~l~~   66 (218)
T 3mq2_A           27 YDDVVLDVGTGDGKHPYKVARQNP-SRLVVALDADKSRMEK   66 (218)
T ss_dssp             SSEEEEEESCTTCHHHHHHHHHCT-TEEEEEEESCGGGGHH
T ss_pred             CCCEEEEecCCCCHHHHHHHHHCC-CCEEEEEECCHHHHHH
Confidence            467899999999999999988731 1347899999985553

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}

Probab=85.58  E-value=0.74  Score=53.67  Aligned_cols=44  Identities=16%  Similarity=0.174  Sum_probs=36.2

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHH
Q 008149          442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKR  485 (576)
Q Consensus       442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~  485 (576)
                      .+.+|||+-||.|.+...|.+.|-+..-|+++|+++.+.+..+.
T Consensus       721 ~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~ARe  764 (950)
T 3htx_A          721 SASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAK  764 (950)
T ss_dssp             CCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHH
T ss_pred             CCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHH
Confidence            46799999999999999999887222347899999998877765

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=85.58  E-value=1.5  Score=44.85  Aligned_cols=72  Identities=17%  Similarity=0.135  Sum_probs=49.3

Q ss_pred             CCCCcccccCCCCChhH-HHHHH-cCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccC
Q 008149          441 PGGLTMLSVFSGIGGAE-VTLHR-LGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLG  518 (576)
Q Consensus       441 ~~~l~VLsLFSGiGG~s-lGL~~-aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g  518 (576)
                      +.+.+|||+=||.||++ +-+.+ .|.   .|+++|+++.....-+.+....+.....++.+|+.++.          .+
T Consensus       121 ~~g~rVLDIGcG~G~~ta~~lA~~~ga---~V~gIDis~~~l~~Ar~~~~~~gl~~v~~v~gDa~~l~----------d~  187 (298)
T 3fpf_A          121 RRGERAVFIGGGPLPLTGILLSHVYGM---RVNVVEIEPDIAELSRKVIEGLGVDGVNVITGDETVID----------GL  187 (298)
T ss_dssp             CTTCEEEEECCCSSCHHHHHHHHTTCC---EEEEEESSHHHHHHHHHHHHHHTCCSEEEEESCGGGGG----------GC
T ss_pred             CCcCEEEEECCCccHHHHHHHHHccCC---EEEEEECCHHHHHHHHHHHHhcCCCCeEEEECchhhCC----------CC
Confidence            45789999999999876 33333 465   37899999998887777665433322234567776643          15


Q ss_pred             CccEEEe
Q 008149          519 SIDFVIC  525 (576)
Q Consensus       519 ~~DLVIG  525 (576)
                      .||+|+-
T Consensus       188 ~FDvV~~  194 (298)
T 3fpf_A          188 EFDVLMV  194 (298)
T ss_dssp             CCSEEEE
T ss_pred             CcCEEEE
Confidence            7999974

>2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A

Probab=84.99  E-value=1.1  Score=39.59  Aligned_cols=39  Identities=18%  Similarity=0.088  Sum_probs=32.7

Q ss_pred             hhhhhHHHhcCCCCh-HHHHHHHHHhCCCCcHHHHHHHHHHh
Q 008149           16 HIEKRASLLMMNFSV-NEVDFALDKLGKDAPVYELVDFITAA   56 (576)
Q Consensus        16 ~s~~r~~li~MGFs~-e~V~kAIqe~Ge~~~~~~Ile~Ll~~   56 (576)
                      .++...+|.+|||+. +.+.+|+...+. | ++.=||+|+..
T Consensus        66 ~~~qL~qL~eMGF~d~~~ni~AL~~t~G-d-ve~AVe~L~~~  105 (108)
T 2cwb_A           66 WQPQLQQLRDMGIQDDELSLRALQATGG-D-IQAALELIFAG  105 (108)
T ss_dssp             THHHHHHHHTTTCCCHHHHHHHHHHHTS-C-HHHHHHHHHHT
T ss_pred             hHHHHHHHHHcCCCCHHHHHHHHHHhCC-C-HHHHHHHHHhc
Confidence            356789999999964 799999999875 5 89999999963

>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}

Probab=84.96  E-value=0.44  Score=46.11  Aligned_cols=85  Identities=13%  Similarity=0.144  Sum_probs=53.7

Q ss_pred             CCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCC-CccccccccccChhhHHHhhhc--cCC
Q 008149          443 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHK--LGS  519 (576)
Q Consensus       443 ~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g-~l~~~~DI~~lt~~~Ie~l~~~--~g~  519 (576)
                      +-+|||+-||.|+.++.+.++-=+-..|+++|+++......+.++...+... ..++.+|..++-    ..+...  .+.
T Consensus        61 ~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l----~~~~~~~~~~~  136 (242)
T 3r3h_A           61 AKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDTL----HSLLNEGGEHQ  136 (242)
T ss_dssp             CSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCHHHHH----HHHHHHHCSSC
T ss_pred             cCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHH----HHHhhccCCCC
Confidence            4689999999999999888741001247899999887766676665543321 224456665432    111111  368


Q ss_pred             ccEEEecCCCCC
Q 008149          520 IDFVICQNSVPQ  531 (576)
Q Consensus       520 ~DLVIGGpPCQ~  531 (576)
                      ||+|+-..++..
T Consensus       137 fD~V~~d~~~~~  148 (242)
T 3r3h_A          137 FDFIFIDADKTN  148 (242)
T ss_dssp             EEEEEEESCGGG
T ss_pred             EeEEEEcCChHH
Confidence            999998776543

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*

Probab=84.92  E-value=1.4  Score=42.58  Aligned_cols=83  Identities=10%  Similarity=0.099  Sum_probs=55.8

Q ss_pred             CCCcccccCCCCChhHHHHHHc---CCceeeEEEeeCCHHHHHHHHHHhhhcCCCC-CccccccccccChhhHHHhhhc-
Q 008149          442 GGLTMLSVFSGIGGAEVTLHRL---GIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHK-  516 (576)
Q Consensus       442 ~~l~VLsLFSGiGG~slGL~~a---Gi~~k~vvavEid~~a~~t~k~~~~~tn~~g-~l~~~~DI~~lt~~~Ie~l~~~-  516 (576)
                      .+-+|||+-||.|...+.+.++   |.   .|+++|+++......+.++...+... ..++.+|..++    +..+... 
T Consensus        79 ~~~~VLeiG~G~G~~~~~la~~~~~~~---~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~----l~~l~~~~  151 (247)
T 1sui_A           79 NAKNTMEIGVYTGYSLLATALAIPEDG---KILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPV----LDEMIKDE  151 (247)
T ss_dssp             TCCEEEEECCGGGHHHHHHHHHSCTTC---EEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHH----HHHHHHSG
T ss_pred             CcCEEEEeCCCcCHHHHHHHHhCCCCC---EEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHH----HHHHHhcc
Confidence            3468999999999999888775   43   47899999999998888886543211 11344555432    1222110 


Q ss_pred             --cCCccEEEecCCCCC
Q 008149          517 --LGSIDFVICQNSVPQ  531 (576)
Q Consensus       517 --~g~~DLVIGGpPCQ~  531 (576)
                        .+.||+|+-..++..
T Consensus       152 ~~~~~fD~V~~d~~~~~  168 (247)
T 1sui_A          152 KNHGSYDFIFVDADKDN  168 (247)
T ss_dssp             GGTTCBSEEEECSCSTT
T ss_pred             CCCCCEEEEEEcCchHH
Confidence              257999998777654

>2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A

Probab=84.64  E-value=1.2  Score=39.54  Aligned_cols=38  Identities=26%  Similarity=0.375  Sum_probs=31.6

Q ss_pred             hHHHHHHHhcCCCH-HHHHHHHHHhCCCCChhhhhHhHhhc
Q 008149           89 MEITLQLLEMGFSE-NQVSLAIEKFGSKTPISELADKIFSG  128 (576)
Q Consensus        89 ~~k~~~L~~MGFse-eEas~AI~r~G~da~i~eLvD~I~Aa  128 (576)
                      .+++..|.+|||++ +.+..||.+++-|  |+--+|.++..
T Consensus        67 ~~qL~qL~eMGF~d~~~ni~AL~~t~Gd--ve~AVe~L~~~  105 (108)
T 2cwb_A           67 QPQLQQLRDMGIQDDELSLRALQATGGD--IQAALELIFAG  105 (108)
T ss_dssp             HHHHHHHHTTTCCCHHHHHHHHHHHTSC--HHHHHHHHHHT
T ss_pred             HHHHHHHHHcCCCCHHHHHHHHHHhCCC--HHHHHHHHHhc
Confidence            46888999999965 6899999999965  77778888764

>3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus}

Probab=83.34  E-value=0.94  Score=49.42  Aligned_cols=83  Identities=13%  Similarity=0.164  Sum_probs=48.5

Q ss_pred             CCcccccCCCCChhHHHHHH-c---C--------CceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhH
Q 008149          443 GLTMLSVFSGIGGAEVTLHR-L---G--------IKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKF  510 (576)
Q Consensus       443 ~l~VLsLFSGiGG~slGL~~-a---G--------i~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~I  510 (576)
                      +-+|+|-.||.|||-++... +   +        +.-..++++|+++.+.++.+.+.--++.....+..+|--.....+ 
T Consensus       218 ~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mNl~lhg~~~~~I~~~dtL~~~~~~-  296 (530)
T 3ufb_A          218 GESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNLLLHGLEYPRIDPENSLRFPLRE-  296 (530)
T ss_dssp             TCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHHHHHHTCSCCEEECSCTTCSCGGG-
T ss_pred             CCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHHHHhcCCccccccccccccCchhh-
Confidence            46899999999999776532 1   1        011247899999998887776432222211223344422111100 


Q ss_pred             HHhhhccCCccEEEecCCC
Q 008149          511 ESLIHKLGSIDFVICQNSV  529 (576)
Q Consensus       511 e~l~~~~g~~DLVIGGpPC  529 (576)
                         ......||+|+|=||=
T Consensus       297 ---~~~~~~fD~Il~NPPf  312 (530)
T 3ufb_A          297 ---MGDKDRVDVILTNPPF  312 (530)
T ss_dssp             ---CCGGGCBSEEEECCCS
T ss_pred             ---hcccccceEEEecCCC
Confidence               0112479999999995

>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}

Probab=83.00  E-value=1.6  Score=42.15  Aligned_cols=85  Identities=12%  Similarity=0.115  Sum_probs=51.6

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhh------cCCCCCccccccccccChhhHHHhhh
Q 008149          442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWES------SGQTGELVQIEDIQALTTKKFESLIH  515 (576)
Q Consensus       442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~------tn~~g~l~~~~DI~~lt~~~Ie~l~~  515 (576)
                      .+.+|||+=||.|.+.+.|.+..=. ..++++|+++......+.....      .......++.+|+.+.    +...+ 
T Consensus        46 ~~~~vLDiGcG~G~~~~~la~~~p~-~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~----l~~~~-  119 (235)
T 3ckk_A           46 AQVEFADIGCGYGGLLVELSPLFPD-TLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKH----LPNFF-  119 (235)
T ss_dssp             CCEEEEEETCTTCHHHHHHGGGSTT-SEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTC----HHHHC-
T ss_pred             CCCeEEEEccCCcHHHHHHHHHCCC-CeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHh----hhhhC-
Confidence            4578999999999999988776311 2478999999877655543221      1112223456777652    11111 


Q ss_pred             ccCCccEEEecCCCCCc
Q 008149          516 KLGSIDFVICQNSVPQI  532 (576)
Q Consensus       516 ~~g~~DLVIGGpPCQ~F  532 (576)
                      ..+.+|+|+-.+|..-+
T Consensus       120 ~~~~~D~v~~~~~dp~~  136 (235)
T 3ckk_A          120 YKGQLTKMFFLFPDPHF  136 (235)
T ss_dssp             CTTCEEEEEEESCC---
T ss_pred             CCcCeeEEEEeCCCchh
Confidence            12579999877775444

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A

Probab=82.96  E-value=1.1  Score=46.03  Aligned_cols=81  Identities=22%  Similarity=0.282  Sum_probs=52.5

Q ss_pred             CCCcccccCCCCChhHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHhhhc-----C---CCCCccccccccccChh---h
Q 008149          442 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESS-----G---QTGELVQIEDIQALTTK---K  509 (576)
Q Consensus       442 ~~l~VLsLFSGiGG~slGL~~a-Gi~~k~vvavEid~~a~~t~k~~~~~t-----n---~~g~l~~~~DI~~lt~~---~  509 (576)
                      .+.+|||+-||.|.+...|.+. |-. ..|+++|+++......+.+....     +   .....+..+|+.++...   .
T Consensus        83 ~~~~VLDlGcG~G~~~~~la~~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~~  161 (383)
T 4fsd_A           83 EGATVLDLGCGTGRDVYLASKLVGEH-GKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPEG  161 (383)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHHHTTT-CEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSCC
T ss_pred             CCCEEEEecCccCHHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccCC
Confidence            4679999999999998888764 211 24789999999888777643211     0   02233566788766321   1


Q ss_pred             HHHhhhccCCccEEEecCC
Q 008149          510 FESLIHKLGSIDFVICQNS  528 (576)
Q Consensus       510 Ie~l~~~~g~~DLVIGGpP  528 (576)
                      +     .-+.||+|+....
T Consensus       162 ~-----~~~~fD~V~~~~~  175 (383)
T 4fsd_A          162 V-----PDSSVDIVISNCV  175 (383)
T ss_dssp             C-----CTTCEEEEEEESC
T ss_pred             C-----CCCCEEEEEEccc
Confidence            1     1257999997643

>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=82.56  E-value=0.99  Score=43.19  Aligned_cols=76  Identities=17%  Similarity=0.132  Sum_probs=50.3

Q ss_pred             CCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 008149          441 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI  520 (576)
Q Consensus       441 ~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~  520 (576)
                      +.+-+|||+=||.|.....+.+.+.  ..+.+||+++...+..+.+....+ ....++.+|...+...    +  .-+.|
T Consensus        59 ~~G~rVLdiG~G~G~~~~~~~~~~~--~~v~~id~~~~~~~~a~~~~~~~~-~~~~~~~~~a~~~~~~----~--~~~~F  129 (236)
T 3orh_A           59 SKGGRVLEVGFGMAIAASKVQEAPI--DEHWIIECNDGVFQRLRDWAPRQT-HKVIPLKGLWEDVAPT----L--PDGHF  129 (236)
T ss_dssp             TTCEEEEEECCTTSHHHHHHTTSCE--EEEEEEECCHHHHHHHHHHGGGCS-SEEEEEESCHHHHGGG----S--CTTCE
T ss_pred             cCCCeEEEECCCccHHHHHHHHhCC--cEEEEEeCCHHHHHHHHHHHhhCC-CceEEEeehHHhhccc----c--cccCC
Confidence            4688999999999999888877653  457899999998888877654332 1222334554433211    0  12568


Q ss_pred             cEEEe
Q 008149          521 DFVIC  525 (576)
Q Consensus       521 DLVIG  525 (576)
                      |.|+.
T Consensus       130 D~i~~  134 (236)
T 3orh_A          130 DGILY  134 (236)
T ss_dssp             EEEEE
T ss_pred             ceEEE
Confidence            99874

>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11

Probab=81.11  E-value=0.76  Score=46.66  Aligned_cols=44  Identities=16%  Similarity=0.089  Sum_probs=37.0

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhh
Q 008149          442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWE  488 (576)
Q Consensus       442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~  488 (576)
                      .+-.|||.|||.|...++..++|-+   .+++|+++....+-+..+.
T Consensus       252 ~~~~VlDpF~GsGtt~~aa~~~gr~---~ig~e~~~~~~~~~~~r~~  295 (323)
T 1boo_A          252 PDDLVVDIFGGSNTTGLVAERESRK---WISFEMKPEYVAASAFRFL  295 (323)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHTTCE---EEEEESCHHHHHHHHGGGS
T ss_pred             CCCEEEECCCCCCHHHHHHHHcCCC---EEEEeCCHHHHHHHHHHHH
Confidence            4556999999999999999999964   5789999999887776543

>1ixs_A Holliday junction DNA helicase RUVA; heterodimeric protein complex, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.20A {Thermus thermophilus} SCOP: a.5.1.1

Probab=81.01  E-value=2.3  Score=33.77  Aligned_cols=40  Identities=15%  Similarity=0.112  Sum_probs=32.0

Q ss_pred             chhhhhHHHhcCCCChHHHHHHHHHh---CCCCcHHHHHHHHH
Q 008149           15 LHIEKRASLLMMNFSVNEVDFALDKL---GKDAPVYELVDFIT   54 (576)
Q Consensus        15 ~~s~~r~~li~MGFs~e~V~kAIqe~---Ge~~~~~~Ile~Ll   54 (576)
                      ..++..+-|+.+||++.++.+|+++.   .++.++++++-.-|
T Consensus        16 ~~~ea~~AL~aLGY~~~ea~kav~~v~~~~~~~~~e~lIr~AL   58 (62)
T 1ixs_A           16 AAEEAVMALAALGFKEAQARAVVLDLLAQNPKARAQDLIKEAL   58 (62)
T ss_dssp             HHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCCHHHHHHHHH
T ss_pred             hHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Confidence            46788999999999999999999987   33445777776555

>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*

Probab=80.95  E-value=2.4  Score=41.50  Aligned_cols=80  Identities=11%  Similarity=0.082  Sum_probs=47.3

Q ss_pred             CCCCcccccCCCCChhHHHHHH-cCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCC
Q 008149          441 PGGLTMLSVFSGIGGAEVTLHR-LGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGS  519 (576)
Q Consensus       441 ~~~l~VLsLFSGiGG~slGL~~-aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~  519 (576)
                      ..+.+||||=||.|+++.-+.. .|=. -.|+++|+++...+.+...-..  .+....+.+|++.....  .   ...+.
T Consensus        75 ~~g~~VLDlG~GtG~~t~~la~~v~~~-G~V~avD~s~~~l~~l~~~a~~--r~nv~~i~~Da~~~~~~--~---~~~~~  146 (232)
T 3id6_C           75 RKGTKVLYLGAASGTTISHVSDIIELN-GKAYGVEFSPRVVRELLLVAQR--RPNIFPLLADARFPQSY--K---SVVEN  146 (232)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHHTTT-SEEEEEECCHHHHHHHHHHHHH--CTTEEEEECCTTCGGGT--T---TTCCC
T ss_pred             CCCCEEEEEeecCCHHHHHHHHHhCCC-CEEEEEECcHHHHHHHHHHhhh--cCCeEEEEcccccchhh--h---ccccc
Confidence            3478999999999998877754 3322 2489999999764333221111  12223456787754311  0   01257


Q ss_pred             ccEEEecCC
Q 008149          520 IDFVICQNS  528 (576)
Q Consensus       520 ~DLVIGGpP  528 (576)
                      ||+|+-..|
T Consensus       147 ~D~I~~d~a  155 (232)
T 3id6_C          147 VDVLYVDIA  155 (232)
T ss_dssp             EEEEEECCC
T ss_pred             eEEEEecCC
Confidence            899876543

>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31

Probab=80.43  E-value=3.9  Score=43.71  Aligned_cols=41  Identities=20%  Similarity=0.195  Sum_probs=33.1

Q ss_pred             CCCCcccccCCCCChhHHHHHHc-CCceeeEEEeeCCHHHHHHH
Q 008149          441 PGGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRIL  483 (576)
Q Consensus       441 ~~~l~VLsLFSGiGG~slGL~~a-Gi~~k~vvavEid~~a~~t~  483 (576)
                      ..+.+||||-||.|.+.+.+.+. |.  ..|++||+++.+...-
T Consensus       241 ~~g~~VLDLGCGsG~la~~LA~~~g~--~~V~GVDis~~~l~~A  282 (433)
T 1u2z_A          241 KKGDTFMDLGSGVGNCVVQAALECGC--ALSFGCEIMDDASDLT  282 (433)
T ss_dssp             CTTCEEEEESCTTSHHHHHHHHHHCC--SEEEEEECCHHHHHHH
T ss_pred             CCCCEEEEeCCCcCHHHHHHHHHCCC--CEEEEEeCCHHHHHHH
Confidence            35678999999999999888774 53  3489999999876655

>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}

Probab=80.23  E-value=1  Score=45.76  Aligned_cols=71  Identities=13%  Similarity=0.160  Sum_probs=45.7

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHH-HHHHhhhcCCCCC-ccccccccccChhhHHHhhhccCC
Q 008149          442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRI-LKRWWESSGQTGE-LVQIEDIQALTTKKFESLIHKLGS  519 (576)
Q Consensus       442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t-~k~~~~~tn~~g~-l~~~~DI~~lt~~~Ie~l~~~~g~  519 (576)
                      .+.+|||+=||.|+++..|.+.|.  .-|++||+++..... ++.      .+.. .....||+.++.+.+.     ...
T Consensus        85 ~g~~vLDiGcGTG~~t~~L~~~ga--~~V~aVDvs~~mL~~a~r~------~~rv~~~~~~ni~~l~~~~l~-----~~~  151 (291)
T 3hp7_A           85 EDMITIDIGASTGGFTDVMLQNGA--KLVYAVDVGTNQLVWKLRQ------DDRVRSMEQYNFRYAEPVDFT-----EGL  151 (291)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTTC--SEEEEECSSSSCSCHHHHT------CTTEEEECSCCGGGCCGGGCT-----TCC
T ss_pred             cccEEEecCCCccHHHHHHHhCCC--CEEEEEECCHHHHHHHHHh------CcccceecccCceecchhhCC-----CCC
Confidence            567899999999999998888886  358999999864332 221      1111 1223566666654432     123


Q ss_pred             ccEEEe
Q 008149          520 IDFVIC  525 (576)
Q Consensus       520 ~DLVIG  525 (576)
                      ||+|+.
T Consensus       152 fD~v~~  157 (291)
T 3hp7_A          152 PSFASI  157 (291)
T ss_dssp             CSEEEE
T ss_pred             CCEEEE
Confidence            787775

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	576
d1g55a_	343	c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId:	7e-05

>d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]} Length = 343

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNMT2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.8 bits (99), Expect = 7e-05
 Identities = 16/94 (17%), Positives = 37/94 (39%), Gaps = 10/94 (10%)

Query: 444 LTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQ 503
           L +L ++SG+GG    L    I  + V +I+ +     + K  +  +      +  + I+
Sbjct: 3   LRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFPHT-----QLLAKTIE 57

Query: 504 ALTTKKFESLIHKLGSIDFVICQNSVPQIPNSKQ 537
            +T ++F+       S D ++            +
Sbjct: 58  GITLEEFDR-----LSFDMILMSPPCQPFTRIGR 86

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	576
d1dcta_	324	DNA methylase HaeIII {Haemophilus aegyptius [TaxId	99.92
d2c7pa1	327	DNA methylase HhaI {Haemophilus haemolyticus [TaxI	99.92
d1g55a_	343	DNMT2 {Human (Homo sapiens) [TaxId: 9606]}	99.91
d2c7pa1	327	DNA methylase HhaI {Haemophilus haemolyticus [TaxI	99.09
d1dcta_	324	DNA methylase HaeIII {Haemophilus aegyptius [TaxId	98.96
d1g55a_	343	DNMT2 {Human (Homo sapiens) [TaxId: 9606]}	98.9
d1wy7a1	201	Hypothetical protein PH1948 {Archaeon Pyrococcus h	98.1
d2esra1	152	Putative methyltransferase SPy1538 {Streptococcus	98.04
d1ws6a1	171	Methyltransferase TTHA0928 {Thermus thermophilus [	97.97
d2fhpa1	182	Putative methylase EF2452 {Enterococcus faecalis [	97.92
d1ne2a_	197	Hypothetical protein Ta1320 {Archaeon Thermoplasma	97.91
d1wxxa2	318	Hypothetical protein TTHA1280, middle and C-termin	97.82
d2as0a2	324	Hypothetical protein PH1915, middle and C-terminal	97.8
d2fpoa1	183	Methylase YhhF {Escherichia coli [TaxId: 562]}	97.79
d2frna1	260	Hypothetical protein PH0793 {Pyrococcus horikoshii	97.75
d2b78a2	317	Hypothetical protein SMu776, middle and C-terminal	97.66
d2igta1	309	Putative methyltransferase Atu0340 {Agrobacterium	97.51
d2ifta1	183	Putative methylase HI0767 {Haemophilus influenzae	97.46
d2crna1	51	Suppressor of T-cell receptor signaling 2 (STS-2)	96.89
d2cpwa1	51	Cbl-interacting protein p70, STS1 {Human (Homo sap	96.87
d1uwva2	358	rRNA (Uracil-5-)-methyltransferase RumA, catalytic	96.84
d1whca_	64	UBA/UBX 33.3 kDa protein {Mouse (Mus musculus) [Ta	96.71
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	96.68
d1oqya1	41	DNA repair protein Hhr23a {Human (Homo sapiens) [T	96.67
d1wgna_	63	Ubiquitin-associated protein 1, UBAP1 {Human (Homo	96.59
d2g3qa1	43	Endocytic protein Ede1, YBL047C {Saccharomyces cer	96.53
d1wjia_	63	Tudor domain containing protein 3, TDRD3 {Human (H	96.51
d1wgna_	63	Ubiquitin-associated protein 1, UBAP1 {Human (Homo	96.5
d1vg5a_	73	Rhomboid family protein At3g58460 {Thale cress (Ar	96.47
d1oqya1	41	DNA repair protein Hhr23a {Human (Homo sapiens) [T	96.43
d1dusa_	194	Hypothetical protein MJ0882 {Archaeon Methanococcu	96.35
d1wiva_	73	Ubiquitin isopeptidase T {Thale cress (Arabidopsis	96.31
d2cpwa1	51	Cbl-interacting protein p70, STS1 {Human (Homo sap	96.26
d2b3ta1	274	N5-glutamine methyltransferase, HemK {Escherichia	96.24
d1vg5a_	73	Rhomboid family protein At3g58460 {Thale cress (Ar	96.18
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	96.17
d1xvaa_	292	Glycine N-methyltransferase {Rat (Rattus norvegicu	96.16
d1wiva_	73	Ubiquitin isopeptidase T {Thale cress (Arabidopsis	95.96
d2f8la1	328	Hypothetical protein Lmo1582 {Listeria monocytogen	95.91
d1wjia_	63	Tudor domain containing protein 3, TDRD3 {Human (H	95.87
d2g3qa1	43	Endocytic protein Ede1, YBL047C {Saccharomyces cer	95.68
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	95.6
d1veka_	84	Ubiquitin isopeptidase T {Thale cress (Arabidopsis	95.53
d1whca_	64	UBA/UBX 33.3 kDa protein {Mouse (Mus musculus) [Ta	95.53
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	95.37
d1ve3a1	226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	95.35
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	95.3
d1ri5a_	252	mRNA cap (Guanine N-7) methyltransferase {Fungus (	95.22
d2crna1	51	Suppressor of T-cell receptor signaling 2 (STS-2)	95.1
d1g6q1_	328	Arginine methyltransferase, HMT1 {Baker's yeast (S	94.81
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	94.81
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	94.76
d2p7ia1	225	Hypothetical protein ECA1738 {Erwinia carotovora [	94.68
d1oria_	316	Protein arginine N-methyltransferase 1, PRMT1 {Rat	94.67
d2avna1	246	Hypothetical methyltransferase TM1389 {Thermotoga	94.59
d2ex4a1	222	Adrenal gland protein AD-003 (C9orf32) {Human (Hom	94.48
d1xxla_	234	Hypothetical protein YcgJ {Bacillus subtilis [TaxI	94.43
d2ih2a1	223	DNA methylase TaqI, N-terminal domain {Thermus aqu	93.85
d1nv8a_	271	N5-glutamine methyltransferase, HemK {Thermotoga m	93.82
d2b9ea1	293	NOL1R {Human (Homo sapiens) [TaxId: 9606]}	93.34
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	93.2
d2h00a1	250	Methyltransferase 10 domain containing protein MET	92.47
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	92.46
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	92.29
d1ttea1	55	Ubiquitin-protein ligase ubc1 {Baker's yeast (Sacc	92.14
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	91.23
d2cosa1	41	Serine/threonine protein kinase LATS2 {Mouse (Mus	91.06
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	91.04
d1veka_	84	Ubiquitin isopeptidase T {Thale cress (Arabidopsis	90.49
d1g8aa_	227	Fibrillarin homologue {Archaeon Pyrococcus horikos	90.35
d1p91a_	268	rRNA methyltransferase RlmA {Escherichia coli [Tax	90.16
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	89.95
d1ej0a_	180	RNA methyltransferase FtsJ {Escherichia coli [TaxI	89.71
d1xtpa_	254	Hypothetical protein Lmaj004091aaa (LmjF30.0810) {	89.48
d1z96a1	38	UBA-domain protein mud1 {Schizosaccharomyces pombe	89.42
d2fcaa1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil	88.77
d2dula1	375	N(2),N(2)-dimethylguanosine tRNA methyltransferase	88.69
d1im8a_	225	Hypothetical protein HI0319 (YecO) {Haemophilus in	87.19
d2gh1a1	281	Methyltransferase BC2162 {Bacillus cereus [TaxId:	87.08
d1booa_	320	m.PvuII N4 cytosine-specific DNA methyltransferase	86.59
d1sqga2	284	Ribosomal RNA small subunit methyltransferase B, R	85.54
d1cuka1	48	DNA helicase RuvA subunit, C-terminal domain {Esch	85.09
d1i1na_	224	Protein-L-isoaspartyl O-methyltransferase {Human (	85.04
d1g60a_	256	Methyltransferase mboII {Moraxella bovis [TaxId: 4	84.93
d1ixka_	313	Hypothetical methyltransferase PH1374 {Archaeon Py	84.82
d1zx0a1	229	Guanidinoacetate methyltransferase {Human (Homo sa	84.71
d1o54a_	266	Hypothetical protein TM0748 {Thermotoga maritima [	84.49
d2okca1	425	Type I restriction enzyme StySJI M protein {Bacter	84.31
d1nt2a_	209	Fibrillarin homologue {Archaeon Archaeoglobus fulg	84.23
d1vbfa_	224	Protein-L-isoaspartyl O-methyltransferase {Sulfolo	83.9
d2ar0a1	524	M.EcoKI {Escherichia coli [TaxId: 562]}	83.56
d1eg2a_	279	m.RsrI N6 adenosine-specific DNA methyltransferase	82.74
d1jqea_	280	Histamine methyltransferase {Human (Homo sapiens)	82.58
d1yzha1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep	82.47
d1z96a1	38	UBA-domain protein mud1 {Schizosaccharomyces pombe	82.08
d1qama_	235	rRNA adenine dimethylase {Bacillus subtilis, Ermc'	81.64
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	80.71

>d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HaeIII
species: Haemophilus aegyptius [TaxId: 197575]

Probab=99.92  E-value=6e-26  Score=222.73  Aligned_cols=105  Identities=17%  Similarity=0.347  Sum_probs=92.4

Q ss_pred             CcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCccEE
Q 008149          444 LTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDFV  523 (576)
Q Consensus       444 l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~DLV  523 (576)
                      |+||||||||||+++||+++||  ++++++|+|+.|+++|+++|.     . .+..+||++++.+++       +.+|||
T Consensus         1 mk~~~lF~G~Gg~~~gl~~aG~--~~~~a~e~d~~a~~~~~~N~~-----~-~~~~~Di~~~~~~~~-------~~~dll   65 (324)
T d1dcta_           1 MNLISLFSGAGGLDLGFQKAGF--RIICANEYDKSIWKTYESNHS-----A-KLIKGDISKISSDEF-------PKCDGI   65 (324)
T ss_dssp             CEEEEESCSSCHHHHHHHHHTC--EEEEEEECCHHHHHHHHHHCC-----S-EEEESCTTTSCGGGS-------CCCSEE
T ss_pred             CeEEEeCcCcCHHHHHHHHCCC--EEEEEEeCCHHHHHHHHHHCC-----C-CCccCChhhCCHhHc-------ccccEE
Confidence            6899999999999999999998  569999999999999988653     2 256799999988765       579999


Q ss_pred             EecCCCCCccccCCCCCCCCccccccCCCCCCCCcchHHHHHHHHHHhhccc
Q 008149          524 ICQNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVRSMK  575 (576)
Q Consensus       524 IGGpPCQ~FS~agr~~~~~~~~~aG~R~Gl~D~Rs~Lf~EyvRIV~~vK~~~  575 (576)
                      +||||||+||.+|            ++.|++|+|+.||++|+|+|+.+||..
T Consensus        66 ~~g~PCq~fS~ag------------~~~g~~d~r~~l~~~~~~~i~~~~Pk~  105 (324)
T d1dcta_          66 IGGPPCQSWSEGG------------SLRGIDDPRGKLFYEYIRILKQKKPIF  105 (324)
T ss_dssp             EECCCCTTTSSSS------------CCCCSSSHHHHHHHHHHHHHHHHCCSE
T ss_pred             eeccccccccccc------------ccccccccccchHHHHHHHHHhhCCce
Confidence            9999999999764            456889999999999999999999853

>d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HhaI
species: Haemophilus haemolyticus [TaxId: 726]

Probab=99.92  E-value=1.6e-25  Score=222.56  Aligned_cols=111  Identities=19%  Similarity=0.301  Sum_probs=96.2

Q ss_pred             cccCCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhc
Q 008149          437 KSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHK  516 (576)
Q Consensus       437 K~~f~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~  516 (576)
                      ++..-++|+||||||||||+++||+++||  ++++|+|+|+.|+++|+.||..+       ..+||++++.+++      
T Consensus         5 ~~~~~~~lrv~~lFsG~Gg~~~gl~~aG~--~~v~a~e~d~~a~~~~~~N~~~~-------~~~Di~~~~~~~~------   69 (327)
T d2c7pa1           5 KDKQLTGLRFIDLFAGLGGFRLALESCGA--ECVYSNEWDKYAQEVYEMNFGEK-------PEGDITQVNEKTI------   69 (327)
T ss_dssp             SSCTTTTCEEEEETCTTTHHHHHHHHTTC--EEEEEECCCHHHHHHHHHHHSCC-------CBSCGGGSCGGGS------
T ss_pred             ccccCCCCeEEEECccccHHHHHHHHCCC--eEEEEEeCCHHHHHHHHHHCCCC-------CcCchhcCchhhc------
Confidence            44555789999999999999999999998  56999999999999999987532       2589999987654      


Q ss_pred             cCCccEEEecCCCCCccccCCCCCCCCccccccCCCCCCCCcchHHHHHHHHHHhhccc
Q 008149          517 LGSIDFVICQNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVRSMK  575 (576)
Q Consensus       517 ~g~~DLVIGGpPCQ~FS~agr~~~~~~~~~aG~R~Gl~D~Rs~Lf~EyvRIV~~vK~~~  575 (576)
                       .++|||+||||||+||.+|            ++.|.+|+|+.||++|+|+|+++||..
T Consensus        70 -~~~Dll~ggpPCq~fS~ag------------~~~g~~d~r~~l~~~~~~~i~~~kP~~  115 (327)
T d2c7pa1          70 -PDHDILCAGFPCQAFSISG------------KQKGFEDSRGTLFFDIARIVREKKPKV  115 (327)
T ss_dssp             -CCCSEEEEECCCTTTCTTS------------CCCGGGSTTSCHHHHHHHHHHHHCCSE
T ss_pred             -ceeeeeecccccchhhhhh------------hhcCCcccchhHHHHHHHHHhccCCcE
Confidence             5799999999999999875            456788999999999999999999853

>d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNMT2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=1.2e-25  Score=222.82  Aligned_cols=110  Identities=16%  Similarity=0.319  Sum_probs=81.4

Q ss_pred             CCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCccE
Q 008149          443 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDF  522 (576)
Q Consensus       443 ~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~DL  522 (576)
                      +|+|+||||||||+++||+++||.+++++|+|+++.|+++|+.+|     +...+..+||++++.+++..     +++||
T Consensus         2 p~kv~~lF~G~Gg~~~gl~~aG~~~~~~~a~E~~~~a~~~~~~n~-----~~~~~~~~di~~~~~~~~~~-----~~~Dl   71 (343)
T d1g55a_           2 PLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNF-----PHTQLLAKTIEGITLEEFDR-----LSFDM   71 (343)
T ss_dssp             CEEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHC-----TTSCEECSCGGGCCHHHHHH-----HCCSE
T ss_pred             CCEEEEcCcCccHHHHHHHHcCCCCeEEEEEECCHHHHHHHHHHC-----CCCCcccCchhhCCHhHcCC-----CCccE
Confidence            489999999999999999999999999999999999999998765     34446679999999887753     47999


Q ss_pred             EEecCCCCCccccCCCCCCCCccccccCCCCCCCCcchHHHHHHHHHHh--hcc
Q 008149          523 VICQNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRV--RSM  574 (576)
Q Consensus       523 VIGGpPCQ~FS~agr~~~~~~~~~aG~R~Gl~D~Rs~Lf~EyvRIV~~v--K~~  574 (576)
                      |+||||||+||.+            |++.|++|+|+.||++|+|+|+++  ||.
T Consensus        72 l~ggpPCq~fS~a------------g~~~~~~d~r~~l~~~~~~~i~~~~~kPk  113 (343)
T d1g55a_          72 ILMSPPCQPFTRI------------GRQGDMTDSRTNSFLHILDILPRLQKLPK  113 (343)
T ss_dssp             EEECCC------------------------------CHHHHHHHHGGGCSSCCS
T ss_pred             EEeeccccccccc------------ccccccccccccccchhhhhHhhhcCCCc
Confidence            9999999999976            456788999999999999999987  564

>d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HhaI
species: Haemophilus haemolyticus [TaxId: 726]

Probab=99.09  E-value=2.1e-11  Score=119.93  Aligned_cols=180  Identities=14%  Similarity=0.152  Sum_probs=105.5

Q ss_pred             cCCCCccccccccccchh----hhHhhhhhh----ccCCceeeccccc-Cccccccccc----ccCCCCCCCCCCCC-CC
Q 008149          246 VAQPPYFFYGNVVDVSID----CWVKMSHFL----YSLEPEFVNSQYF-SALSRREGYL----HNLPTTNRFHIPPE-PP  311 (576)
Q Consensus       246 ~~~ppfF~~eNV~~~~~~----~w~~Is~fL----~~i~Pe~vds~~f-saa~R~R~y~----hNLP~~nR~~~~p~-~p  311 (576)
                      ..+|.||++|||..+-..    .+..|...|    |.+...++|+..| .||+|+|.|+    +++...+.....|. ..
T Consensus       110 ~~kP~~~~lENV~~~~~~~~~~~~~~i~~~l~~lGY~~~~~vl~a~~~GvPQ~R~R~fivg~r~~~~~~~~~~p~p~~~~  189 (327)
T d2c7pa1         110 EKKPKVVFMENVKNFASHDNGNTLEVVKNTMNELDYSFHAKVLNALDYGIPQKRERIYMICFRNDLNIQNFQFPKPFELN  189 (327)
T ss_dssp             HHCCSEEEEEEEGGGGTGGGGHHHHHHHHHHHHTTBCCEEEEEEGGGGTCSBCCEEEEEEEEBGGGCCCCCCCCCCCCCC
T ss_pred             ccCCcEEecccchhhhhhccchhhHHhhhHHHhcCCcceeeEecHHHcCCCchhhhheeeeeccCccccccccccccccc
Confidence            458999999999987543    355555555    7889999999999 8999999987    34444433111121 25


Q ss_pred             CcccccccCCCc-----------------cCCCcCcCcccceeeccCcchhHHHHHHHHHHhhccCCCchhhhHHHHHhh
Q 008149          312 MTIQDAIPHTKK-----------------WWPSWDTRKHLSCINSGTSGISQLCERFEKLLRDSRGVLSSQQQRDILHRS  374 (576)
Q Consensus       312 ~ti~d~lp~~~~-----------------~wp~wd~r~klnci~t~~~~~~~l~~~i~~~~~~~~~~~~~~~q~~vl~~c  374 (576)
                      .+|+|++.....                 ++.......+.+++.....+.. ..       .....-++.....   ...
T Consensus       190 ~~i~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-------~~~~~~~t~~~~~---~~~  258 (327)
T d2c7pa1         190 TFVKDLLLPDSEVEHLVIDRKDLVMTNQEIEQTTPKTVRLGIVGKGGQGER-IY-------STRGIAITLSAYG---GGI  258 (327)
T ss_dssp             CCGGGTCCCGGGTGGGEECCTTCEECSCCCSSCCSSCCEEEESTTCCTTCE-EE-------ETTSCBCCCCSSC---CST
T ss_pred             cccccccccccchhhhcccccccccchhhhhcccchhhhhccccCCCCCcc-cc-------ccccccccccccC---ccc
Confidence            678887742211                 1111111111222111100000 00       0000000000000   000


Q ss_pred             cccceeeecccccCCCChhhHHHHhcCCCCCcccCCCChHHHHHHhhhhhccccchhhhccccc
Q 008149          375 EKLNLVWVGAYKLGPVDPEHIELILGYPSNHTQAAGNSLTARLESLRHCFQTDTLGYHLSVLKS  438 (576)
Q Consensus       375 ~k~nlvW~g~~~~~ple~~E~E~i~GfP~~~T~~~~~~~teR~k~Lg~sf~vdtv~~~lsvLK~  438 (576)
                      ....-.+..+++.+.|++.|+.||+|||++|+-  ..+.+++++.+||++.++.+.++...++.
T Consensus       259 ~~~~~~~~~~~~~R~lT~rE~arLqgFPd~f~~--~~s~~~~~~~iGNAVp~~v~~~I~~~I~~  320 (327)
T d2c7pa1         259 FAKTGGYLVNGKTRKLHPRECARVMGYPDSYKV--HPSTSQAYKQFGNSVVINVLQYIAYNIGS  320 (327)
T ss_dssp             TTTTCEEEETTEEEECCHHHHHHHTTCCTTSCC--CSSHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred             cCCCCcccCCCcCcCCCHHHHHHhCCCCCCcEe--CCCHHHHHhHccCCCCHHHHHHHHHHHHH
Confidence            001112345788999999999999999999985  57899999999999999988888666543

>d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HaeIII
species: Haemophilus aegyptius [TaxId: 197575]

Probab=98.96  E-value=5.9e-11  Score=115.05  Aligned_cols=189  Identities=13%  Similarity=0.067  Sum_probs=100.3

Q ss_pred             cCCCCccccccccccchh----hhHhhhhhh----ccCCceeeccccc-CcccccccccccC----CCCCCCCCCCCCCC
Q 008149          246 VAQPPYFFYGNVVDVSID----CWVKMSHFL----YSLEPEFVNSQYF-SALSRREGYLHNL----PTTNRFHIPPEPPM  312 (576)
Q Consensus       246 ~~~ppfF~~eNV~~~~~~----~w~~Is~fL----~~i~Pe~vds~~f-saa~R~R~y~hNL----P~~nR~~~~p~~p~  312 (576)
                      ..+|.||++|||..+-..    .+..|-.-|    |.+...++||..| .||+|+|.||=..    +..--+|.....+.
T Consensus       100 ~~~Pk~~~lENV~~~~~~~~~~~~~~~l~~l~~lGY~v~~~vlna~~~GvPQ~R~R~fiv~~r~~~~~~~~~p~~~~~~~  179 (324)
T d1dcta_         100 QKKPIFFLAENVKGMMAQRHNKAVQEFIQEFDNAGYDVHIILLNANDYGVAQDRKRVFYIGFRKELNINYLPPIPHLIKP  179 (324)
T ss_dssp             HHCCSEEEEEEEGGGGSGGGHHHHHHHHHHHHHHHEEEEEEEEEGGGGTCSBCCEEEEEEEEEGGGCCCCCCCCCCSSCC
T ss_pred             hhCCceeeccccccccccccchhhHHHHhHHhhCCCccceeeeecccccCchhhceeeEeeecCCCCccccccccccccc
Confidence            458999999999877532    233333333    7899999999999 9999999997432    22212221112355


Q ss_pred             cccccccC--------CCccCCCcCcCcccceeeccCcchhHHHHHHHHHHhhccCCCc----hhhhHH--------HHH
Q 008149          313 TIQDAIPH--------TKKWWPSWDTRKHLSCINSGTSGISQLCERFEKLLRDSRGVLS----SQQQRD--------ILH  372 (576)
Q Consensus       313 ti~d~lp~--------~~~~wp~wd~r~klnci~t~~~~~~~l~~~i~~~~~~~~~~~~----~~~q~~--------vl~  372 (576)
                      |+.|++..        ..+++........-+.-.... .......  .+...+....+.    ..-...        +..
T Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (324)
T d1dcta_         180 TFKDVIWDLKDNPIPALDKNKTNGNKCIYPNHEYFIG-SYSTIFM--SRNRVRQWNEPAFTVQASGRQCQLHPQAPVMLK  256 (324)
T ss_dssp             CGGGTTGGGTTCCEECBTTTBCCGGGSSSTTCEECCC-CCCHHHH--TSCCCCCTTSCBCCCCSCGGGCCBCTTSCCCEE
T ss_pred             chhhhhhhcccCCccchhhcccccccccccchhhhcc-ccccccc--ccccccccccccccccccccccccccCCCceec
Confidence            66666522        222222111110000000000 0000000  000000000000    000000        000


Q ss_pred             hhcccceeee-cccccCCCChhhHHHHhcCCCCCcccCCCChHHHHHHhhhhhccccchhhhccccc
Q 008149          373 RSEKLNLVWV-GAYKLGPVDPEHIELILGYPSNHTQAAGNSLTARLESLRHCFQTDTLGYHLSVLKS  438 (576)
Q Consensus       373 ~c~k~nlvW~-g~~~~~ple~~E~E~i~GfP~~~T~~~~~~~teR~k~Lg~sf~vdtv~~~lsvLK~  438 (576)
                      .++..+-.+. .++.++.|||.|+.||+|||++|+- ...+.++++|.+||+..++++.+++..+++
T Consensus       257 ~~~~~~~~~~~~~~~~R~LT~rE~arLqgFPd~~~f-~~~s~~~~y~~iGNaV~p~v~~~I~~~I~~  322 (324)
T d1dcta_         257 VSKNLNKFVEGKEHLYRRLTVRECARVQGFPDDFIF-HYESLNDGYKMIGNAVPVNLAYEIAKTIKS  322 (324)
T ss_dssp             EETTEEECCTTTGGGCCBCBHHHHHHHHTCCTTCCC-CCSBHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred             ccCCCCcccCCCCCcCcCCCHHHHHHHCCCCCCCEe-CCCCHHHHHeeEccCccHHHHHHHHHHHHH
Confidence            0001111111 3456789999999999999999983 145899999999999999998888877764

>d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNMT2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.90  E-value=2.7e-10  Score=111.48  Aligned_cols=56  Identities=18%  Similarity=0.298  Sum_probs=49.6

Q ss_pred             ecccccCCCChhhHHHHhcCCCCCcccCCCChHHHHHHhhhhhccccchhhhcccc
Q 008149          382 VGAYKLGPVDPEHIELILGYPSNHTQAAGNSLTARLESLRHCFQTDTLGYHLSVLK  437 (576)
Q Consensus       382 ~g~~~~~ple~~E~E~i~GfP~~~T~~~~~~~teR~k~Lg~sf~vdtv~~~lsvLK  437 (576)
                      ..+.+++.|||.|+.||||||++|+=..++|.++++|.+||+..++++.++++.|.
T Consensus       287 ~~~~~~R~LT~rE~arLQgFPd~f~~~~~~s~~~~ykqiGNaVp~~v~~~i~k~l~  342 (343)
T d1g55a_         287 LLILKLRYFTPKEIANLLGFPPEFGFPEKITVKQRYRLLGNSLNVHVVAKLIKILY  342 (343)
T ss_dssp             HHTTCEECCCHHHHHHHTTCCTTCCCCTTSCHHHHHHHHHHSCCHHHHHHHHHHHH
T ss_pred             CCCCCCcCCCHHHHHHhCCCCCCCEECCCCCHHHHhhhEeCCccHHHHHHHHHHhc
Confidence            45677899999999999999999987678999999999999999999888877653

>d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein PH1948
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.10  E-value=2.6e-06  Score=79.55  Aligned_cols=75  Identities=21%  Similarity=0.205  Sum_probs=57.4

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 008149          442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  521 (576)
Q Consensus       442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~D  521 (576)
                      .|.+|||||||+|++.+++...|..  .|++||+|+.+.+..+.+....+. ...+...|+.++.           +.||
T Consensus        46 ~g~~vLDlg~GtG~l~i~a~~~g~~--~v~~vdi~~~~~~~a~~N~~~~~~-~~~~~~~d~~~~~-----------~~fD  111 (201)
T d1wy7a1          46 EGKVVADLGAGTGVLSYGALLLGAK--EVICVEVDKEAVDVLIENLGEFKG-KFKVFIGDVSEFN-----------SRVD  111 (201)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHTTCS--EEEEEESCHHHHHHHHHHTGGGTT-SEEEEESCGGGCC-----------CCCS
T ss_pred             CCCEEEECcCcchHHHHHHHHcCCC--EEEEEcCcHHHHHHHHHHHHHcCC-CceEEECchhhhC-----------CcCc
Confidence            3678999999999999998888863  478999999999999887654422 2223455655442           4799


Q ss_pred             EEEecCCCC
Q 008149          522 FVICQNSVP  530 (576)
Q Consensus       522 LVIGGpPCQ  530 (576)
                      +|+.-|||.
T Consensus       112 ~Vi~nPP~~  120 (201)
T d1wy7a1         112 IVIMNPPFG  120 (201)
T ss_dssp             EEEECCCCS
T ss_pred             EEEEcCccc
Confidence            999999984

>d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methyltransferase SPy1538
species: Streptococcus pyogenes [TaxId: 1314]

Probab=98.04  E-value=4.9e-06  Score=74.01  Aligned_cols=88  Identities=15%  Similarity=0.264  Sum_probs=63.4

Q ss_pred             hhhccccccCCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCC-CccccccccccChhh
Q 008149          431 YHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKK  509 (576)
Q Consensus       431 ~~lsvLK~~f~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g-~l~~~~DI~~lt~~~  509 (576)
                      .+|+.|.+++ .+-+|||||||+|++.+.+-..|..  -|.+||+|+.+.++++.+....+... ..++.+|+.+.    
T Consensus         4 ~~fn~l~~~~-~g~~vlDl~~GtG~~~iea~~rga~--~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~~D~~~~----   76 (152)
T d2esra1           4 AIFNMIGPYF-NGGRVLDLFAGSGGLAIEAVSRGMS--AAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERA----   76 (152)
T ss_dssp             HHHHHHCSCC-CSCEEEEETCTTCHHHHHHHHTTCC--EEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHH----
T ss_pred             HHHHHHHhhC-CCCeEEEcCCccCHHHHHHHHhCcc--eeeeehhchhhhhhhhhhhhhcccccchhhhccccccc----
Confidence            3566677766 4778999999999999877777874  58999999999999999886553222 12344554432    


Q ss_pred             HHHhhhccCCccEEEecCC
Q 008149          510 FESLIHKLGSIDFVICQNS  528 (576)
Q Consensus       510 Ie~l~~~~g~~DLVIGGpP  528 (576)
                      ++   ...+.+|+|+--||
T Consensus        77 l~---~~~~~fDiIf~DPP   92 (152)
T d2esra1          77 ID---CLTGRFDLVFLDPP   92 (152)
T ss_dssp             HH---HBCSCEEEEEECCS
T ss_pred             cc---ccccccceeEechh
Confidence            11   12368999999998

>d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methyltransferase TTHA0928
species: Thermus thermophilus [TaxId: 274]

Probab=97.97  E-value=5.6e-06  Score=75.28  Aligned_cols=88  Identities=17%  Similarity=0.230  Sum_probs=62.3

Q ss_pred             hccccccCCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHH
Q 008149          433 LSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFES  512 (576)
Q Consensus       433 lsvLK~~f~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~  512 (576)
                      |+.|.+..+.+-+|||||||.|++.+.+...|.+   +++||+|+.+.+..+.++...+...      .|.....+.+..
T Consensus        32 f~~l~~~~~~g~~vLDl~~G~G~~~i~a~~~ga~---vv~vD~~~~a~~~~~~N~~~~~~~~------~v~~~~~d~~~~  102 (171)
T d1ws6a1          32 FDYLRLRYPRRGRFLDPFAGSGAVGLEAASEGWE---AVLVEKDPEAVRLLKENVRRTGLGA------RVVALPVEVFLP  102 (171)
T ss_dssp             HHHHHHHCTTCCEEEEETCSSCHHHHHHHHTTCE---EEEECCCHHHHHHHHHHHHHHTCCC------EEECSCHHHHHH
T ss_pred             HHHhhccccCCCeEEEeccccchhhhhhhhccch---hhhcccCHHHHhhhhHHHHhhcccc------ceeeeehhcccc
Confidence            3444555667789999999999999988888974   4579999999999999987654321      234444443322


Q ss_pred             hh-hccCCccEEEecCCC
Q 008149          513 LI-HKLGSIDFVICQNSV  529 (576)
Q Consensus       513 l~-~~~g~~DLVIGGpPC  529 (576)
                      .. .....||+|+--||.
T Consensus       103 ~~~~~~~~fD~If~DPPY  120 (171)
T d1ws6a1         103 EAKAQGERFTVAFMAPPY  120 (171)
T ss_dssp             HHHHTTCCEEEEEECCCT
T ss_pred             cccccCCccceeEEcccc
Confidence            22 233579999999983

>d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase EF2452
species: Enterococcus faecalis [TaxId: 1351]

Probab=97.92  E-value=6.6e-06  Score=75.70  Aligned_cols=89  Identities=19%  Similarity=0.283  Sum_probs=62.4

Q ss_pred             hccccccCCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCC-CccccccccccChhhHH
Q 008149          433 LSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFE  511 (576)
Q Consensus       433 lsvLK~~f~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g-~l~~~~DI~~lt~~~Ie  511 (576)
                      |+.|..++ .+-+|||||||.|++.+.+-.-|..  -|+.||+|+.+.++.+.+....+... ..++..|+.+.    ++
T Consensus        33 Fn~l~~~~-~~~~vLDlfaGsG~~g~ea~srGa~--~v~~ve~~~~a~~~~~~N~~~~~~~~~~~i~~~D~~~~----l~  105 (182)
T d2fhpa1          33 FNMIGPYF-DGGMALDLYSGSGGLAIEAVSRGMD--KSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRA----LE  105 (182)
T ss_dssp             HHHHCSCC-SSCEEEETTCTTCHHHHHHHHTTCS--EEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHH----HH
T ss_pred             HHHHHHhc-CCCEEEEcccccccccceeeecchh--HHHHHHHHHHHHHHHHHHhhhhhcccccccccccchhh----hh
Confidence            44455444 4678999999999999977777874  48899999999999999876543221 12344555432    22


Q ss_pred             HhhhccCCccEEEecCC
Q 008149          512 SLIHKLGSIDFVICQNS  528 (576)
Q Consensus       512 ~l~~~~g~~DLVIGGpP  528 (576)
                      .+......||+|+--||
T Consensus       106 ~~~~~~~~fDlIflDPP  122 (182)
T d2fhpa1         106 QFYEEKLQFDLVLLDPP  122 (182)
T ss_dssp             HHHHTTCCEEEEEECCC
T ss_pred             hhcccCCCcceEEechh
Confidence            33333357999999999

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=97.91  E-value=6.1e-06  Score=77.57  Aligned_cols=69  Identities=20%  Similarity=0.258  Sum_probs=56.6

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 008149          442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  521 (576)
Q Consensus       442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~D  521 (576)
                      .|-+||||+||.|.+++++..+|..  .|++||+|+.+.++.+.+..     ...+..+|+.++.           +.||
T Consensus        48 ~Gk~VLDlGcGtG~l~i~a~~~ga~--~V~~vDid~~a~~~ar~N~~-----~~~~~~~D~~~l~-----------~~fD  109 (197)
T d1ne2a_          48 GGRSVIDAGTGNGILACGSYLLGAE--SVTAFDIDPDAIETAKRNCG-----GVNFMVADVSEIS-----------GKYD  109 (197)
T ss_dssp             BTSEEEEETCTTCHHHHHHHHTTBS--EEEEEESCHHHHHHHHHHCT-----TSEEEECCGGGCC-----------CCEE
T ss_pred             CCCEEEEeCCCCcHHHHHHHHcCCC--cccccccCHHHHHHHHHccc-----cccEEEEehhhcC-----------Ccce
Confidence            3678999999999999999999974  58999999999998887543     2235678887654           4799


Q ss_pred             EEEecCC
Q 008149          522 FVICQNS  528 (576)
Q Consensus       522 LVIGGpP  528 (576)
                      +|+.-||
T Consensus       110 ~Vi~NPP  116 (197)
T d1ne2a_         110 TWIMNPP  116 (197)
T ss_dssp             EEEECCC
T ss_pred             EEEeCcc
Confidence            9999888

>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein TTHA1280, middle and C-terminal domains
species: Thermus thermophilus [TaxId: 274]

Probab=97.82  E-value=1.4e-05  Score=79.48  Aligned_cols=85  Identities=20%  Similarity=0.129  Sum_probs=60.9

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 008149          442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  521 (576)
Q Consensus       442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~D  521 (576)
                      .+-+|||||||.||+++++.+.|   .-|+++|+++.+.+..+.+...++.....++..|+.++..    .+....+.||
T Consensus       145 ~g~rVLDl~~gtG~~s~~~a~g~---~~V~~vD~s~~al~~a~~n~~~ngl~~~~~i~~d~~~~~~----~~~~~~~~fD  217 (318)
T d1wxxa2         145 RGERALDVFSYAGGFALHLALGF---REVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLR----RLEKEGERFD  217 (318)
T ss_dssp             CEEEEEEETCTTTHHHHHHHHHE---EEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHH----HHHHTTCCEE
T ss_pred             CCCeeeccCCCCcHHHHHHHhcC---CcEEeecchHHHHHHHHHHHHHcCCCCcceeeccHHHHhh----hhHhhhcCCC
Confidence            46799999999999999987644   3588999999999999988765433222234455544321    2222336899


Q ss_pred             EEEecCCCCCcc
Q 008149          522 FVICQNSVPQIP  533 (576)
Q Consensus       522 LVIGGpPCQ~FS  533 (576)
                      +|+-=|||...+
T Consensus       218 ~Vi~DpP~~~~~  229 (318)
T d1wxxa2         218 LVVLDPPAFAKG  229 (318)
T ss_dssp             EEEECCCCSCCS
T ss_pred             EEEEcCCccccc
Confidence            999999997655

>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein PH1915, middle and C-terminal domains
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=97.80  E-value=2.7e-05  Score=77.39  Aligned_cols=90  Identities=20%  Similarity=0.154  Sum_probs=64.8

Q ss_pred             ccCCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCC-CccccccccccChhhHHHhhhc
Q 008149          438 SMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHK  516 (576)
Q Consensus       438 ~~f~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g-~l~~~~DI~~lt~~~Ie~l~~~  516 (576)
                      .+...+-+|||+|||.||+++.+-+.|..  -|+++|+++.+.+..+.++..++... ..++.+|+.+.    +..+...
T Consensus       141 ~~~~~g~~VLDl~~g~G~~si~~a~~ga~--~V~~vD~s~~al~~a~~N~~~ngl~~~~~~~~~d~~~~----~~~~~~~  214 (324)
T d2as0a2         141 KWVQPGDRVLDVFTYTGGFAIHAAIAGAD--EVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEE----MEKLQKK  214 (324)
T ss_dssp             GGCCTTCEEEETTCTTTHHHHHHHHTTCS--EEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHH----HHHHHHT
T ss_pred             hhcCCCCeeecccCcccchhhhhhhcCCc--EEEeecCCHHHHHHHHHHHHHcCCCccceeeechhhhh----hHHHHhc
Confidence            33445789999999999999999888863  58999999999999998886553221 12345665432    2222233


Q ss_pred             cCCccEEEecCCCCCcc
Q 008149          517 LGSIDFVICQNSVPQIP  533 (576)
Q Consensus       517 ~g~~DLVIGGpPCQ~FS  533 (576)
                      ...||+|+--|||-.-+
T Consensus       215 ~~~fD~Vi~DpP~~~~~  231 (324)
T d2as0a2         215 GEKFDIVVLDPPAFVQH  231 (324)
T ss_dssp             TCCEEEEEECCCCSCSS
T ss_pred             cCCCCchhcCCccccCC
Confidence            46899999999996654

>d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methylase YhhF
species: Escherichia coli [TaxId: 562]

Probab=97.79  E-value=1.4e-05  Score=73.29  Aligned_cols=87  Identities=15%  Similarity=0.101  Sum_probs=59.3

Q ss_pred             hccccccCCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHH
Q 008149          433 LSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFES  512 (576)
Q Consensus       433 lsvLK~~f~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~  512 (576)
                      |+.|...+ .+.+|||||||.|.+.+.+-.-|..  -|++||+|+.+.++++.+....+.....++..|+.       .-
T Consensus        35 fn~l~~~~-~~~~vLDlfaGsG~~giealsrGa~--~v~~VE~~~~a~~~~k~N~~~~~~~~~~ii~~d~~-------~~  104 (183)
T d2fpoa1          35 FNWLAPVI-VDAQCLDCFAGSGALGLEALSRYAA--GATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAM-------SF  104 (183)
T ss_dssp             HHHHHHHH-TTCEEEETTCTTCHHHHHHHHTTCS--EEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHH-------HH
T ss_pred             Hhhhhccc-chhhhhhhhccccceeeeEEecCcc--eeEEEEEeechhhHHHHHHhhccccceeeeeeccc-------cc
Confidence            33344333 3568999999999999877777874  48899999999999998876443222223334432       21


Q ss_pred             hhhccCCccEEEecCCC
Q 008149          513 LIHKLGSIDFVICQNSV  529 (576)
Q Consensus       513 l~~~~g~~DLVIGGpPC  529 (576)
                      +......+|+|+--||.
T Consensus       105 l~~~~~~fDlIf~DPPY  121 (183)
T d2fpoa1         105 LAQKGTPHNIVFVDPPF  121 (183)
T ss_dssp             HSSCCCCEEEEEECCSS
T ss_pred             ccccccccCEEEEcCcc
Confidence            21233679999999994

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=97.75  E-value=1.7e-05  Score=77.00  Aligned_cols=81  Identities=16%  Similarity=0.144  Sum_probs=62.0

Q ss_pred             CCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCC-ccccccccccChhhHHHhhhccC
Q 008149          440 FPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGE-LVQIEDIQALTTKKFESLIHKLG  518 (576)
Q Consensus       440 f~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~-l~~~~DI~~lt~~~Ie~l~~~~g  518 (576)
                      +..+-+|||+|||+|++++-+.+.|-  .-|+++|+|+.+.+.++.+-..++..+. .++.+|.+++..+         +
T Consensus       105 ~~~g~~VlD~~aG~G~~~l~~a~~~~--~~V~avd~n~~a~~~~~~N~~~n~l~~~v~~~~~D~~~~~~~---------~  173 (260)
T d2frna1         105 AKPDELVVDMFAGIGHLSLPIAVYGK--AKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGE---------N  173 (260)
T ss_dssp             CCTTCEEEETTCTTTTTHHHHHHHTC--CEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCC---------S
T ss_pred             cCCccEEEECcceEcHHHHHHHHhCC--cEEEEecCCHHHHHHHHHHHHHhCCCceEEEEEcchHHhccC---------C
Confidence            34578999999999999998777774  2489999999999999988765443332 3456888776532         4


Q ss_pred             CccEEEecCCCCC
Q 008149          519 SIDFVICQNSVPQ  531 (576)
Q Consensus       519 ~~DLVIGGpPCQ~  531 (576)
                      .+|.|+-++|+.+
T Consensus       174 ~~D~Ii~~~p~~~  186 (260)
T d2frna1         174 IADRILMGYVVRT  186 (260)
T ss_dssp             CEEEEEECCCSSG
T ss_pred             CCCEEEECCCCch
Confidence            6999999999754

>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein SMu776, middle and C-terminal domains
species: Streptococcus mutans [TaxId: 1309]

Probab=97.66  E-value=4.9e-05  Score=75.73  Aligned_cols=84  Identities=17%  Similarity=0.176  Sum_probs=60.1

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCC--CccccccccccChhhHHHhhhccCC
Q 008149          442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG--ELVQIEDIQALTTKKFESLIHKLGS  519 (576)
Q Consensus       442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g--~l~~~~DI~~lt~~~Ie~l~~~~g~  519 (576)
                      .+-+|||||||.||+++.+...|-  +-|++||+++.+.+..+.++..+....  .-++.+|+.+.    ++.+......
T Consensus       144 ~g~~VLdlf~~~G~~sl~aa~~ga--~~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i~~d~~~~----l~~~~~~~~~  217 (317)
T d2b78a2         144 AGKTVLNLFSYTAAFSVAAAMGGA--MATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDY----FKYARRHHLT  217 (317)
T ss_dssp             BTCEEEEETCTTTHHHHHHHHTTB--SEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHH----HHHHHHTTCC
T ss_pred             CCCceeecCCCCcHHHHHHHhCCC--ceEEEecCCHHHHHHHHHHHHHhcccCcceEEEEccHHHH----HHHHHhhcCC
Confidence            467899999999999998888887  348999999999999999886443211  12345555422    2223333457


Q ss_pred             ccEEEecCCCCC
Q 008149          520 IDFVICQNSVPQ  531 (576)
Q Consensus       520 ~DLVIGGpPCQ~  531 (576)
                      ||+||-=|||=+
T Consensus       218 fD~Ii~DPP~f~  229 (317)
T d2b78a2         218 YDIIIIDPPSFA  229 (317)
T ss_dssp             EEEEEECCCCC-
T ss_pred             CCEEEEcChhhc
Confidence            999999999543

>d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Putative methyltransferase Atu0340
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.51  E-value=6.8e-05  Score=74.86  Aligned_cols=82  Identities=16%  Similarity=0.104  Sum_probs=61.3

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCC--CccccccccccChhhHHHhhhccCC
Q 008149          442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG--ELVQIEDIQALTTKKFESLIHKLGS  519 (576)
Q Consensus       442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g--~l~~~~DI~~lt~~~Ie~l~~~~g~  519 (576)
                      .+.+|||||||.||+++.+-..|.+   |.+||+++.+....+.|...++...  .-++.+|+.++-.    .....-..
T Consensus       132 ~~~rVLdlf~~tG~~sl~aa~~GA~---V~~VD~s~~al~~a~~N~~ln~~~~~~~~~i~~D~~~~l~----~~~~~~~~  204 (309)
T d2igta1         132 RPLKVLNLFGYTGVASLVAAAAGAE---VTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQ----REERRGST  204 (309)
T ss_dssp             SCCEEEEETCTTCHHHHHHHHTTCE---EEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHH----HHHHHTCC
T ss_pred             CCCeEEEecCCCcHHHHHHHhCCCe---EEEEeChHHHHHHHHHhhhhhcccCCcEEEEeCCHHHhHH----HHhhcCCC
Confidence            4689999999999999999999973   6799999999999998876543322  1245677765432    22223367


Q ss_pred             ccEEEecCCCC
Q 008149          520 IDFVICQNSVP  530 (576)
Q Consensus       520 ~DLVIGGpPCQ  530 (576)
                      ||+||-=||+=
T Consensus       205 fD~IilDPP~f  215 (309)
T d2igta1         205 YDIILTDPPKF  215 (309)
T ss_dssp             BSEEEECCCSE
T ss_pred             CCEEEECCCcc
Confidence            99999999964

>d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase HI0767
species: Haemophilus influenzae [TaxId: 727]

Probab=97.46  E-value=7.1e-05  Score=68.41  Aligned_cols=88  Identities=16%  Similarity=0.083  Sum_probs=58.2

Q ss_pred             hccccccCCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCC--CccccccccccChhhH
Q 008149          433 LSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG--ELVQIEDIQALTTKKF  510 (576)
Q Consensus       433 lsvLK~~f~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g--~l~~~~DI~~lt~~~I  510 (576)
                      |+.|...+ .+.+|||||||.|.+.+-.-.-|..  -|+.||.|..+.++++.+.+..+...  ..+...|+.+.-    
T Consensus        35 Fn~l~~~~-~~~~vLDlFaGsG~~glEalSRGA~--~v~fVE~~~~a~~~ik~Ni~~l~~~~~~~~~~~~d~~~~l----  107 (183)
T d2ifta1          35 FNWLMPYI-HQSECLDGFAGSGSLGFEALSRQAK--KVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFL----  107 (183)
T ss_dssp             HHHHHHHH-TTCEEEETTCTTCHHHHHHHHTTCS--EEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHT----
T ss_pred             HHHhhhhc-ccceEeecccCccceeeeeeeecce--eeEEeecccchhhhHhhHHhhhcccccccccccccccccc----
Confidence            33343333 4578999999999988777778874  58899999999999999887553211  112223322111    


Q ss_pred             HHhhhccCCccEEEecCC
Q 008149          511 ESLIHKLGSIDFVICQNS  528 (576)
Q Consensus       511 e~l~~~~g~~DLVIGGpP  528 (576)
                       ......+.||||+--||
T Consensus       108 -~~~~~~~~fDlIFlDPP  124 (183)
T d2ifta1         108 -KQPQNQPHFDVVFLDPP  124 (183)
T ss_dssp             -TSCCSSCCEEEEEECCC
T ss_pred             -cccccCCcccEEEechh
Confidence             01112357999999999

>d2crna1 a.5.2.1 (A:8-58) Suppressor of T-cell receptor signaling 2 (STS-2) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Suppressor of T-cell receptor signaling 2 (STS-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.89  E-value=0.00041  Score=51.97  Aligned_cols=39  Identities=23%  Similarity=0.271  Sum_probs=35.3

Q ss_pred             hhhhHHHhcCCCChHHHHHHHHHhCCCCcHHHHHHHHHHh
Q 008149           17 IEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAA   56 (576)
Q Consensus        17 s~~r~~li~MGFs~e~V~kAIqe~Ge~~~~~~Ile~Ll~~   56 (576)
                      .+...+|++|||+++.+.||+...|..+ ++.=++.|++.
T Consensus         3 p~~v~~L~~MGF~~~~a~~Al~~t~n~~-ve~A~~Wl~~h   41 (51)
T d2crna1           3 PSLLEPLLAMGFPVHTALKALAATGRKT-AEEALAWLHDH   41 (51)
T ss_dssp             CSSHHHHHHTSCCHHHHHHHHHHHTSCC-HHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHCCCC-HHHHHHHHHHc
Confidence            4567899999999999999999999877 99999999975

>d2cpwa1 a.5.2.1 (A:8-58) Cbl-interacting protein p70, STS1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Cbl-interacting protein p70, STS1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.87  E-value=0.00049  Score=51.61  Aligned_cols=38  Identities=24%  Similarity=0.246  Sum_probs=34.0

Q ss_pred             hhhhHHHhcCCCChHHHHHHHHHhCCCCcHHHHHHHHHH
Q 008149           17 IEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITA   55 (576)
Q Consensus        17 s~~r~~li~MGFs~e~V~kAIqe~Ge~~~~~~Ile~Ll~   55 (576)
                      +...++|++|||+++.+.||+...|..+ ++.-++.||+
T Consensus        13 ~~~l~~L~~MGF~~~~a~~AL~~t~n~~-ve~A~~WLl~   50 (51)
T d2cpwa1          13 GSALDVLLSMGFPRARAQKALASTGGRS-VQTACDWLFS   50 (51)
T ss_dssp             CCHHHHHHHHTCCHHHHHHHHHHTTTSC-HHHHHHHHHS
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHCCCC-HHHHHHHHHc
Confidence            3467899999999999999999999767 9999999985

>d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: (Uracil-5-)-methyltransferase
domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain
species: Escherichia coli [TaxId: 562]

Probab=96.84  E-value=0.00065  Score=66.94  Aligned_cols=83  Identities=16%  Similarity=0.137  Sum_probs=57.9

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 008149          442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  521 (576)
Q Consensus       442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~D  521 (576)
                      .+-+|||||||+|.+++.|.+.+   +-|+++|+++.+.+..+.+...++-....++.+|+.+.-...    ......+|
T Consensus       212 ~~~~vlDLycG~G~fsl~La~~~---~~V~gvE~~~~ai~~A~~na~~n~i~n~~~~~~~~~~~~~~~----~~~~~~~d  284 (358)
T d1uwva2         212 PEDRVLDLFCGMGNFTLPLATQA---ASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQ----PWAKNGFD  284 (358)
T ss_dssp             TTCEEEEESCTTTTTHHHHHTTS---SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSS----GGGTTCCS
T ss_pred             CCceEEEecccccccchhccccc---cEEEeccCcHHHHHHHHHhHHhcccccceeeecchhhhhhhh----hhhhccCc
Confidence            35679999999999999998765   458999999999998888765443332334456665432221    11235789


Q ss_pred             EEEecCCCCC
Q 008149          522 FVICQNSVPQ  531 (576)
Q Consensus       522 LVIGGpPCQ~  531 (576)
                      +||==||=.|
T Consensus       285 ~vilDPPR~G  294 (358)
T d1uwva2         285 KVLLDPARAG  294 (358)
T ss_dssp             EEEECCCTTC
T ss_pred             eEEeCCCCcc
Confidence            9999988443

>d1whca_ a.5.2.1 (A:) UBA/UBX 33.3 kDa protein {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: UBA/UBX 33.3 kDa protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.71  E-value=0.00084  Score=52.35  Aligned_cols=38  Identities=21%  Similarity=0.323  Sum_probs=34.8

Q ss_pred             hhhHHHhcCCCChHHHHHHHHHhCCCCcHHHHHHHHHHh
Q 008149           18 EKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAA   56 (576)
Q Consensus        18 ~~r~~li~MGFs~e~V~kAIqe~Ge~~~~~~Ile~Ll~~   56 (576)
                      +...+|++||||++.+.||+...|..+ ++.-+++|++.
T Consensus        11 ~~l~~L~~MGF~~~~a~~AL~~t~n~~-~e~A~~Wl~~h   48 (64)
T d1whca_          11 TALESLIEMGFPRGRAEKALALTGNQG-IEAAMDWLMEH   48 (64)
T ss_dssp             CHHHHHHTTTCCHHHHHHHHHHHTSCC-HHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHhCCCC-HHHHHHHHHHC
Confidence            367899999999999999999999877 99999999975

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=96.68  E-value=0.00072  Score=65.10  Aligned_cols=75  Identities=15%  Similarity=0.213  Sum_probs=54.1

Q ss_pred             ccCCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhcc
Q 008149          438 SMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKL  517 (576)
Q Consensus       438 ~~f~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~  517 (576)
                      .+...+-+|||+.||.|.+++++.++|.+   |+++|+|+.+.+..+.+...++. ...+..+|+.+.    +     ..
T Consensus       116 ~~~~~g~~VLDiGcGsG~l~i~aa~~g~~---V~gvDis~~av~~A~~na~~n~~-~~~~~~~d~~~~----~-----~~  182 (254)
T d2nxca1         116 RHLRPGDKVLDLGTGSGVLAIAAEKLGGK---ALGVDIDPMVLPQAEANAKRNGV-RPRFLEGSLEAA----L-----PF  182 (254)
T ss_dssp             HHCCTTCEEEEETCTTSHHHHHHHHTTCE---EEEEESCGGGHHHHHHHHHHTTC-CCEEEESCHHHH----G-----GG
T ss_pred             hhcCccCEEEEcccchhHHHHHHHhcCCE---EEEEECChHHHHHHHHHHHHcCC-ceeEEecccccc----c-----cc
Confidence            33345789999999999999999999963   67999999999998887654432 222344554321    1     13


Q ss_pred             CCccEEEe
Q 008149          518 GSIDFVIC  525 (576)
Q Consensus       518 g~~DLVIG  525 (576)
                      +.||+|+.
T Consensus       183 ~~fD~V~a  190 (254)
T d2nxca1         183 GPFDLLVA  190 (254)
T ss_dssp             CCEEEEEE
T ss_pred             cccchhhh
Confidence            68999985

>d1oqya1 a.5.2.1 (A:160-200) DNA repair protein Hhr23a {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: DNA repair protein Hhr23a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.67  E-value=0.00039  Score=49.92  Aligned_cols=38  Identities=13%  Similarity=0.112  Sum_probs=32.7

Q ss_pred             hhhhhHHHhcCCCChHHHHHHHHHhCCCCcHHHHHHHHHH
Q 008149           16 HIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITA   55 (576)
Q Consensus        16 ~s~~r~~li~MGFs~e~V~kAIqe~Ge~~~~~~Ile~Ll~   55 (576)
                      ..+...+|++|||+++.|.+|++..+. | ++.=+|+||+
T Consensus         4 ~e~~i~~L~~MGF~~~~a~~AL~~~~~-N-~e~A~~~LlS   41 (41)
T d1oqya1           4 YETMLTEIMSMGYERERVVAALRASYN-N-PHRAVEYLLT   41 (41)
T ss_dssp             HHHHHHHHHTTTCCSHHHHHHHHHSCS-S-TTHHHHTTTT
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHhCC-C-HHHHHHHHhC
Confidence            456789999999999999999999875 5 7888888874

>d1wgna_ a.5.2.1 (A:) Ubiquitin-associated protein 1, UBAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Ubiquitin-associated protein 1, UBAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.59  E-value=0.00084  Score=52.26  Aligned_cols=39  Identities=26%  Similarity=0.404  Sum_probs=34.5

Q ss_pred             hHHHHHHHhcCCCHHHHHHHHHHhCCCCChhhhhHhHhhcc
Q 008149           89 MEITLQLLEMGFSENQVSLAIEKFGSKTPISELADKIFSGQ  129 (576)
Q Consensus        89 ~~k~~~L~~MGFseeEas~AI~r~G~da~i~eLvD~I~Aaq  129 (576)
                      .+.+..|+.|||++++|..||.+||.+  ++.-+|.|++-.
T Consensus        20 e~~v~~L~~MGF~~~~a~~AL~~~~~n--~e~A~~~Lls~~   58 (63)
T d1wgna_          20 RQCVETVVNMGYSYECVLRAMKKKGEN--IEQILDYLFAHS   58 (63)
T ss_dssp             HHHHHHHHHHHCCHHHHHHHHHHHCSC--HHHHHHHHHHHS
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHcCCC--HHHHHHHHHhCC
Confidence            456779999999999999999999985  999999999753

>d2g3qa1 a.5.2.1 (A:1339-1381) Endocytic protein Ede1, YBL047C {Saccharomyces cerevisiae [TaxId: 4932]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Endocytic protein Ede1, YBL047C
species: Saccharomyces cerevisiae [TaxId: 4932]

Probab=96.53  E-value=0.0016  Score=46.92  Aligned_cols=35  Identities=23%  Similarity=0.291  Sum_probs=27.4

Q ss_pred             hHHHHHHHhcCCCHHHHHHHHHHhCCCCChhhhhHhH
Q 008149           89 MEITLQLLEMGFSENQVSLAIEKFGSKTPISELADKI  125 (576)
Q Consensus        89 ~~k~~~L~~MGFseeEas~AI~r~G~da~i~eLvD~I  125 (576)
                      +..+..|+.|||+|++|..|+++|.=+  ++.-++++
T Consensus         5 ~~ai~eL~~MGF~e~~A~~AL~k~~wn--leaAtN~L   39 (43)
T d2g3qa1           5 SLAVEELSGMGFTEEEAHNALEKCNWD--LEAATNFL   39 (43)
T ss_dssp             HHHHHHHHTTTSCHHHHHHHHHHHTSC--HHHHHHHH
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHcCCC--HHHHHHHH
Confidence            456778999999999999999999875  44444443

>d1wjia_ a.5.2.1 (A:) Tudor domain containing protein 3, TDRD3 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Tudor domain containing protein 3, TDRD3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.51  E-value=0.0015  Score=50.69  Aligned_cols=39  Identities=15%  Similarity=0.153  Sum_probs=35.0

Q ss_pred             hhhhhHHHhcCCCChHHHHHHHHHhCCCCcHHHHHHHHHHh
Q 008149           16 HIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAA   56 (576)
Q Consensus        16 ~s~~r~~li~MGFs~e~V~kAIqe~Ge~~~~~~Ile~Ll~~   56 (576)
                      ..+...+|++|||+++.+.+|++.+|. + ++.-+++|++.
T Consensus         9 d~~~v~~L~~MGF~~~~a~~AL~~~~~-~-~e~A~~wL~~~   47 (63)
T d1wjia_           9 DEKALKHITEMGFSKEASRQALMDNGN-N-LEAALNVLLTS   47 (63)
T ss_dssp             CHHHHHHHHTTTCCHHHHHHHHHHTTS-C-HHHHHHHHHHH
T ss_pred             CHHHHHHHHHcCCCHHHHHHHHHHhCC-C-HHHHHHHHHHC
Confidence            456789999999999999999999985 5 99999999975

>d1wgna_ a.5.2.1 (A:) Ubiquitin-associated protein 1, UBAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Ubiquitin-associated protein 1, UBAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.50  E-value=0.00093  Score=52.01  Aligned_cols=38  Identities=21%  Similarity=0.312  Sum_probs=34.6

Q ss_pred             hhhhHHHhcCCCChHHHHHHHHHhCCCCcHHHHHHHHHHh
Q 008149           17 IEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAA   56 (576)
Q Consensus        17 s~~r~~li~MGFs~e~V~kAIqe~Ge~~~~~~Ile~Ll~~   56 (576)
                      .+...+|++|||+++.+.+|++..|. + ++.-+++||+.
T Consensus        20 e~~v~~L~~MGF~~~~a~~AL~~~~~-n-~e~A~~~Lls~   57 (63)
T d1wgna_          20 RQCVETVVNMGYSYECVLRAMKKKGE-N-IEQILDYLFAH   57 (63)
T ss_dssp             HHHHHHHHHHHCCHHHHHHHHHHHCS-C-HHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHcCC-C-HHHHHHHHHhC
Confidence            45789999999999999999999986 5 99999999974

>d1vg5a_ a.5.2.1 (A:) Rhomboid family protein At3g58460 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Rhomboid family protein At3g58460
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.47  E-value=0.0015  Score=52.13  Aligned_cols=40  Identities=23%  Similarity=0.326  Sum_probs=36.3

Q ss_pred             hHHHHHHHhcCCCHHHHHHHHHHhCCCCChhhhhHhHhhccc
Q 008149           89 MEITLQLLEMGFSENQVSLAIEKFGSKTPISELADKIFSGQI  130 (576)
Q Consensus        89 ~~k~~~L~~MGFseeEas~AI~r~G~da~i~eLvD~I~Aaq~  130 (576)
                      .+.+..|+.|||+++++..|+..|+.+  |+.-+|+|+..+.
T Consensus        30 ee~i~~L~~MGF~~~~a~~AL~~~~~n--~e~A~~~Ll~~~~   69 (73)
T d1vg5a_          30 EEQIQKLVAMGFDRTQVEVALAAADDD--LTVAVEILMSQSG   69 (73)
T ss_dssp             HHHHHHHHTTTCCHHHHHHHHHHHTSC--HHHHHHHHHTCSC
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHhCCC--HHHHHHHHHhCCC
Confidence            457889999999999999999999996  9999999998773

>d1oqya1 a.5.2.1 (A:160-200) DNA repair protein Hhr23a {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: DNA repair protein Hhr23a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.43  E-value=0.0011  Score=47.53  Aligned_cols=37  Identities=11%  Similarity=0.232  Sum_probs=30.0

Q ss_pred             hhHHHHHHHhcCCCHHHHHHHHHHhCCCCChhhhhHhHh
Q 008149           88 TMEITLQLLEMGFSENQVSLAIEKFGSKTPISELADKIF  126 (576)
Q Consensus        88 ~~~k~~~L~~MGFseeEas~AI~r~G~da~i~eLvD~I~  126 (576)
                      .++++..|+.|||++++|..|+..++.+  ++.=+|.++
T Consensus         4 ~e~~i~~L~~MGF~~~~a~~AL~~~~~N--~e~A~~~Ll   40 (41)
T d1oqya1           4 YETMLTEIMSMGYERERVVAALRASYNN--PHRAVEYLL   40 (41)
T ss_dssp             HHHHHHHHHTTTCCSHHHHHHHHHSCSS--TTHHHHTTT
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHhCCC--HHHHHHHHh
Confidence            3468889999999999999999999975  555555554

>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein MJ0882
domain: Hypothetical protein MJ0882
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.35  E-value=0.0035  Score=56.53  Aligned_cols=76  Identities=12%  Similarity=0.039  Sum_probs=53.4

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCC--ccccccccccChhhHHHhhhccCC
Q 008149          442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGE--LVQIEDIQALTTKKFESLIHKLGS  519 (576)
Q Consensus       442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~--l~~~~DI~~lt~~~Ie~l~~~~g~  519 (576)
                      .+-+|||++||.|.+++.+.+.+-+   |.++|+|+.+....+.+....+....  .+..+|+.+--         .-+.
T Consensus        52 ~~~~VLDiGcG~G~~~~~la~~~~~---v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~d~~~~~---------~~~~  119 (194)
T d1dusa_          52 KDDDILDLGCGYGVIGIALADEVKS---TTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENV---------KDRK  119 (194)
T ss_dssp             TTCEEEEETCTTSHHHHHHGGGSSE---EEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTC---------TTSC
T ss_pred             CCCeEEEEeecCChhHHHHHhhccc---cceeeeccccchhHHHHHHHhCCccceEEEEEcchhhhh---------ccCC
Confidence            3578999999999999999887753   67899999999988877654432221  12345554311         1247


Q ss_pred             ccEEEecCCC
Q 008149          520 IDFVICQNSV  529 (576)
Q Consensus       520 ~DLVIGGpPC  529 (576)
                      +|+|+.-+|.
T Consensus       120 fD~Ii~~~p~  129 (194)
T d1dusa_         120 YNKIITNPPI  129 (194)
T ss_dssp             EEEEEECCCS
T ss_pred             ceEEEEcccE
Confidence            9999987774

>d1wiva_ a.5.2.1 (A:) Ubiquitin isopeptidase T {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Ubiquitin isopeptidase T
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.31  E-value=0.0031  Score=50.25  Aligned_cols=40  Identities=18%  Similarity=0.260  Sum_probs=35.5

Q ss_pred             chhhhhHHHhcCCCChHHHHHHHHHhCCCCcHHHHHHHHHHh
Q 008149           15 LHIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAA   56 (576)
Q Consensus        15 ~~s~~r~~li~MGFs~e~V~kAIqe~Ge~~~~~~Ile~Ll~~   56 (576)
                      ...+...+|++|||+++.+.+|++..|. + ++.=+++||+.
T Consensus        28 ~d~~~i~~L~~MGF~~~~a~~AL~~~~~-n-~e~Av~~Lls~   67 (73)
T d1wiva_          28 IDQSSVDTLLSFGFAEDVARKALKASGG-D-IEKATDWVFNN   67 (73)
T ss_dssp             SCHHHHHHHHHHTCCHHHHHHHHHHTTS-C-HHHHHHHHHHS
T ss_pred             CCHHHHHHHHhcCCCHHHHHHHHHHcCC-C-HHHHHHHHHcC
Confidence            3567889999999999999999999987 5 99999999963

>d2cpwa1 a.5.2.1 (A:8-58) Cbl-interacting protein p70, STS1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Cbl-interacting protein p70, STS1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.26  E-value=0.0017  Score=48.62  Aligned_cols=36  Identities=28%  Similarity=0.442  Sum_probs=31.8

Q ss_pred             HHHHHHhcCCCHHHHHHHHHHhCCCCChhhhhHhHhh
Q 008149           91 ITLQLLEMGFSENQVSLAIEKFGSKTPISELADKIFS  127 (576)
Q Consensus        91 k~~~L~~MGFseeEas~AI~r~G~da~i~eLvD~I~A  127 (576)
                      .+..|++|||+++.+..|+...|.. +++.-+|.|++
T Consensus        15 ~l~~L~~MGF~~~~a~~AL~~t~n~-~ve~A~~WLl~   50 (51)
T d2cpwa1          15 ALDVLLSMGFPRARAQKALASTGGR-SVQTACDWLFS   50 (51)
T ss_dssp             HHHHHHHHTCCHHHHHHHHHHTTTS-CHHHHHHHHHS
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHCCC-CHHHHHHHHHc
Confidence            5779999999999999999999963 79999988874

>d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Escherichia coli [TaxId: 562]

Probab=96.24  E-value=0.0031  Score=61.34  Aligned_cols=87  Identities=9%  Similarity=0.057  Sum_probs=60.3

Q ss_pred             cccCCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhc
Q 008149          437 KSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHK  516 (576)
Q Consensus       437 K~~f~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~  516 (576)
                      +.....+.+||||-||.|.+.+++...--. ..|+++|+++.|.++-+.|-...+-....+..+|+.+       .+.  
T Consensus       103 ~~~~~~~~~vlDlGtGSG~I~i~la~~~p~-~~v~avDis~~Al~~A~~Na~~~~~~~v~~~~~d~~~-------~~~--  172 (274)
T d2b3ta1         103 ARLPEQPCRILDLGTGTGAIALALASERPD-CEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFS-------ALA--  172 (274)
T ss_dssp             HHSCSSCCEEEEETCTTSHHHHHHHHHCTT-SEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTG-------GGT--
T ss_pred             hhhcccccceeeeehhhhHHHHHHHhhCCc-ceeeeccchhHHHhHHHHHHHHhCcccceeeeccccc-------ccC--
Confidence            333456789999999999999888765433 3588999999999998887654432222244555432       111  


Q ss_pred             cCCccEEEecCCCCCcc
Q 008149          517 LGSIDFVICQNSVPQIP  533 (576)
Q Consensus       517 ~g~~DLVIGGpPCQ~FS  533 (576)
                      .+.||+|+.-||.=+.+
T Consensus       173 ~~~fDlIvsNPPYi~~~  189 (274)
T d2b3ta1         173 GQQFAMIVSNPPYIDEQ  189 (274)
T ss_dssp             TCCEEEEEECCCCBCTT
T ss_pred             CCceeEEEecchhhhhh
Confidence            14799999999987654

>d1vg5a_ a.5.2.1 (A:) Rhomboid family protein At3g58460 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Rhomboid family protein At3g58460
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.18  E-value=0.0024  Score=50.87  Aligned_cols=40  Identities=20%  Similarity=0.297  Sum_probs=36.1

Q ss_pred             hhhhhHHHhcCCCChHHHHHHHHHhCCCCcHHHHHHHHHHhh
Q 008149           16 HIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQ   57 (576)
Q Consensus        16 ~s~~r~~li~MGFs~e~V~kAIqe~Ge~~~~~~Ile~Ll~~q   57 (576)
                      ..+...+|+.|||+.+.+.+|++..+. | ++.-+|+||..+
T Consensus        29 ~ee~i~~L~~MGF~~~~a~~AL~~~~~-n-~e~A~~~Ll~~~   68 (73)
T d1vg5a_          29 SEEQIQKLVAMGFDRTQVEVALAAADD-D-LTVAVEILMSQS   68 (73)
T ss_dssp             CHHHHHHHHTTTCCHHHHHHHHHHHTS-C-HHHHHHHHHTCS
T ss_pred             CHHHHHHHHHhCCCHHHHHHHHHHhCC-C-HHHHHHHHHhCC
Confidence            567889999999999999999999988 5 999999999754

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=96.17  E-value=0.0033  Score=56.41  Aligned_cols=75  Identities=16%  Similarity=0.152  Sum_probs=52.9

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCC-ccccccccccChhhHHHhhhccCCc
Q 008149          442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGE-LVQIEDIQALTTKKFESLIHKLGSI  520 (576)
Q Consensus       442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~-l~~~~DI~~lt~~~Ie~l~~~~g~~  520 (576)
                      .+-+|||++||.|++++.+-+.+-   -|+++|+++.+.+..+.+....+.... .++.+|..++        ......|
T Consensus        33 ~g~~VLDiGcGsG~~s~~lA~~~~---~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~gda~~~--------~~~~~~~  101 (186)
T d1l3ia_          33 KNDVAVDVGCGTGGVTLELAGRVR---RVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEA--------LCKIPDI  101 (186)
T ss_dssp             TTCEEEEESCTTSHHHHHHHTTSS---EEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHH--------HTTSCCE
T ss_pred             CCCEEEEEECCeEcccccccccce---EEEEecCCHHHHHHHHHHHHHcCCCcceEEEECchhhc--------ccccCCc
Confidence            367899999999999998877653   478999999999999888765543222 2344554332        2234689


Q ss_pred             cEEEecC
Q 008149          521 DFVICQN  527 (576)
Q Consensus       521 DLVIGGp  527 (576)
                      |+|+.+.
T Consensus       102 D~v~~~~  108 (186)
T d1l3ia_         102 DIAVVGG  108 (186)
T ss_dssp             EEEEESC
T ss_pred             CEEEEeC
Confidence            9988654

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.16  E-value=0.0047  Score=58.88  Aligned_cols=80  Identities=19%  Similarity=0.180  Sum_probs=52.7

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 008149          442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  521 (576)
Q Consensus       442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~D  521 (576)
                      ++-+|||+-||.|.++..|.+.|++   |.+||+++...+..+........ .......++.+++...+.......+.||
T Consensus        56 ~~~~vLD~GcG~G~~~~~la~~g~~---v~gvD~S~~ml~~A~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~fd  131 (292)
T d1xvaa_          56 GCHRVLDVACGTGVDSIMLVEEGFS---VTSVDASDKMLKYALKERWNRRK-EPAFDKWVIEEANWLTLDKDVPAGDGFD  131 (292)
T ss_dssp             TCCEEEESSCTTSHHHHHHHHTTCE---EEEEESCHHHHHHHHHHHHHTTT-SHHHHTCEEEECCGGGHHHHSCCTTCEE
T ss_pred             CCCEEEEecCCCcHHHHHHHHcCCe---eeeccCchHHHHHHHHHHHhccc-ccccceeeeeeccccccccccCCCCCce
Confidence            3568999999999999999999974   67999999988777665543321 1122334555554433322111235789


Q ss_pred             EEEe
Q 008149          522 FVIC  525 (576)
Q Consensus       522 LVIG  525 (576)
                      +|+.
T Consensus       132 ~v~~  135 (292)
T d1xvaa_         132 AVIC  135 (292)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            8884

>d1wiva_ a.5.2.1 (A:) Ubiquitin isopeptidase T {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Ubiquitin isopeptidase T
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=95.96  E-value=0.0034  Score=49.97  Aligned_cols=39  Identities=26%  Similarity=0.404  Sum_probs=34.3

Q ss_pred             hHHHHHHHhcCCCHHHHHHHHHHhCCCCChhhhhHhHhhcc
Q 008149           89 MEITLQLLEMGFSENQVSLAIEKFGSKTPISELADKIFSGQ  129 (576)
Q Consensus        89 ~~k~~~L~~MGFseeEas~AI~r~G~da~i~eLvD~I~Aaq  129 (576)
                      .+++..|+.|||++++|..||..||.  .++.=|+.|+.-.
T Consensus        30 ~~~i~~L~~MGF~~~~a~~AL~~~~~--n~e~Av~~Lls~~   68 (73)
T d1wiva_          30 QSSVDTLLSFGFAEDVARKALKASGG--DIEKATDWVFNNS   68 (73)
T ss_dssp             HHHHHHHHHHTCCHHHHHHHHHHTTS--CHHHHHHHHHHSC
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHcCC--CHHHHHHHHHcCC
Confidence            45788999999999999999999997  5999999998743

>d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Hypothetical protein Lmo1582
species: Listeria monocytogenes [TaxId: 1639]

Probab=95.91  E-value=0.0058  Score=59.25  Aligned_cols=80  Identities=14%  Similarity=0.002  Sum_probs=51.9

Q ss_pred             CCCcccccCCCCChhHHHHH----HcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhcc
Q 008149          442 GGLTMLSVFSGIGGAEVTLH----RLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKL  517 (576)
Q Consensus       442 ~~l~VLsLFSGiGG~slGL~----~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~  517 (576)
                      .+.+|+|.+||.||+-+++.    ..+..-..++++|+|+.+.++.+.+......... ...+|....         ...
T Consensus       117 ~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~~~~~-~~~~d~~~~---------~~~  186 (328)
T d2f8la1         117 KNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMT-LLHQDGLAN---------LLV  186 (328)
T ss_dssp             SEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCCE-EEESCTTSC---------CCC
T ss_pred             CCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhhhhhh-hhccccccc---------ccc
Confidence            46889999999999988764    2333333578999999988877665443322111 222332111         113


Q ss_pred             CCccEEEecCCCCC
Q 008149          518 GSIDFVICQNSVPQ  531 (576)
Q Consensus       518 g~~DLVIGGpPCQ~  531 (576)
                      +.||+|+|=||...
T Consensus       187 ~~fD~vi~NPPy~~  200 (328)
T d2f8la1         187 DPVDVVISDLPVGY  200 (328)
T ss_dssp             CCEEEEEEECCCSE
T ss_pred             ccccccccCCCCCC
Confidence            57999999999854

>d1wjia_ a.5.2.1 (A:) Tudor domain containing protein 3, TDRD3 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Tudor domain containing protein 3, TDRD3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.87  E-value=0.0044  Score=47.90  Aligned_cols=38  Identities=18%  Similarity=0.337  Sum_probs=34.4

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHhCCCCChhhhhHhHhhcc
Q 008149           90 EITLQLLEMGFSENQVSLAIEKFGSKTPISELADKIFSGQ  129 (576)
Q Consensus        90 ~k~~~L~~MGFseeEas~AI~r~G~da~i~eLvD~I~Aaq  129 (576)
                      +.+..|+.|||+++.+..||..|+.  +++.-++.|+.-.
T Consensus        11 ~~v~~L~~MGF~~~~a~~AL~~~~~--~~e~A~~wL~~~~   48 (63)
T d1wjia_          11 KALKHITEMGFSKEASRQALMDNGN--NLEAALNVLLTSN   48 (63)
T ss_dssp             HHHHHHHTTTCCHHHHHHHHHHTTS--CHHHHHHHHHHHS
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHhCC--CHHHHHHHHHHCC
Confidence            4667999999999999999999986  6999999999876

>d2g3qa1 a.5.2.1 (A:1339-1381) Endocytic protein Ede1, YBL047C {Saccharomyces cerevisiae [TaxId: 4932]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Endocytic protein Ede1, YBL047C
species: Saccharomyces cerevisiae [TaxId: 4932]

Probab=95.68  E-value=0.0075  Score=43.35  Aligned_cols=36  Identities=22%  Similarity=0.195  Sum_probs=30.0

Q ss_pred             hhhhHHHhcCCCChHHHHHHHHHhCCCCcHHHHHHHHH
Q 008149           17 IEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFIT   54 (576)
Q Consensus        17 s~~r~~li~MGFs~e~V~kAIqe~Ge~~~~~~Ile~Ll   54 (576)
                      +.-...|++|||+++.+.+|++++.- | .+.-+++||
T Consensus         5 ~~ai~eL~~MGF~e~~A~~AL~k~~w-n-leaAtN~LL   40 (43)
T d2g3qa1           5 SLAVEELSGMGFTEEEAHNALEKCNW-D-LEAATNFLL   40 (43)
T ss_dssp             HHHHHHHHTTTSCHHHHHHHHHHHTS-C-HHHHHHHHH
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHcCC-C-HHHHHHHHH
Confidence            34567899999999999999999865 3 678888888

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=95.60  E-value=0.011  Score=53.90  Aligned_cols=71  Identities=18%  Similarity=0.191  Sum_probs=54.5

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 008149          442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  521 (576)
Q Consensus       442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~D  521 (576)
                      ..-+|||+=||.|..+..|.++|.+   |.+||+++...+..++.....+. ...+..+|+.+++.+         +.||
T Consensus        41 ~~~~iLDiGcGtG~~~~~l~~~~~~---v~gvD~s~~mi~~a~~~~~~~~~-~i~~~~~d~~~l~~~---------~~fD  107 (251)
T d1wzna1          41 EVRRVLDLACGTGIPTLELAERGYE---VVGLDLHEEMLRVARRKAKERNL-KIEFLQGDVLEIAFK---------NEFD  107 (251)
T ss_dssp             CCCEEEEETCTTCHHHHHHHHTTCE---EEEEESCHHHHHHHHHHHHHTTC-CCEEEESCGGGCCCC---------SCEE
T ss_pred             CCCEEEEeCCCCCccchhhcccceE---EEEEeeccccccccccccccccc-cchheehhhhhcccc---------cccc
Confidence            3457999999999999999999984   67899999988887776544332 233567898887632         4689


Q ss_pred             EEEe
Q 008149          522 FVIC  525 (576)
Q Consensus       522 LVIG  525 (576)
                      +|+.
T Consensus       108 ~I~~  111 (251)
T d1wzna1         108 AVTM  111 (251)
T ss_dssp             EEEE
T ss_pred             hHhh
Confidence            8885

>d1veka_ a.5.2.1 (A:) Ubiquitin isopeptidase T {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Ubiquitin isopeptidase T
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=95.53  E-value=0.0066  Score=49.53  Aligned_cols=40  Identities=23%  Similarity=0.194  Sum_probs=36.2

Q ss_pred             hhhhhHHHhcCCCChHHHHHHHHHhCCCCcHHHHHHHHHHh
Q 008149           16 HIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAA   56 (576)
Q Consensus        16 ~s~~r~~li~MGFs~e~V~kAIqe~Ge~~~~~~Ile~Ll~~   56 (576)
                      ..+...+|++|||+++.+.||+...|..+ ++.=+++|++.
T Consensus        29 d~~~v~~L~~MGF~~~~a~~AL~~t~n~~-~e~A~~Wl~~h   68 (84)
T d1veka_          29 NEEIVAQLVSMGFSQLHCQKAAINTSNAG-VEEAMNWLLSH   68 (84)
T ss_dssp             CHHHHHHHHHHTCCHHHHHHHHHHTTTCC-HHHHHHHHHHH
T ss_pred             CHHHHHHHHHcCCCHHHHHHHHHHHcCCC-HHHHHHHHHHc
Confidence            45678899999999999999999999877 99999999975

>d1whca_ a.5.2.1 (A:) UBA/UBX 33.3 kDa protein {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: UBA/UBX 33.3 kDa protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.53  E-value=0.0065  Score=47.13  Aligned_cols=38  Identities=24%  Similarity=0.363  Sum_probs=34.6

Q ss_pred             HHHHHHhcCCCHHHHHHHHHHhCCCCChhhhhHhHhhcc
Q 008149           91 ITLQLLEMGFSENQVSLAIEKFGSKTPISELADKIFSGQ  129 (576)
Q Consensus        91 k~~~L~~MGFseeEas~AI~r~G~da~i~eLvD~I~Aaq  129 (576)
                      .+.+|++|||+++.|..||-.+|.. +++.-++.|++-.
T Consensus        12 ~l~~L~~MGF~~~~a~~AL~~t~n~-~~e~A~~Wl~~h~   49 (64)
T d1whca_          12 ALESLIEMGFPRGRAEKALALTGNQ-GIEAAMDWLMEHE   49 (64)
T ss_dssp             HHHHHHTTTCCHHHHHHHHHHHTSC-CHHHHHHHHHHHT
T ss_pred             HHHHHHHcCCCHHHHHHHHHHhCCC-CHHHHHHHHHHCC
Confidence            5679999999999999999999885 7999999999865

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.37  E-value=0.0095  Score=57.45  Aligned_cols=73  Identities=16%  Similarity=0.170  Sum_probs=51.4

Q ss_pred             CCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCccE
Q 008149          443 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDF  522 (576)
Q Consensus       443 ~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~DL  522 (576)
                      +-+||||-||.|.+++.+.++|-  +.|+++|+++.+..+.+....+.......++.+|+.++...        ...+|+
T Consensus        36 ~~~VLDiGcG~G~lsl~aa~~Ga--~~V~aid~s~~~~~a~~~~~~~~~~~~i~~~~~~~~~l~~~--------~~~~D~  105 (311)
T d2fyta1          36 DKVVLDVGCGTGILSMFAAKAGA--KKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVHLP--------VEKVDV  105 (311)
T ss_dssp             TCEEEEETCTTSHHHHHHHHTTC--SEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCS--------CSCEEE
T ss_pred             cCEEEEECCCCCHHHHHHHHcCC--CEEEEEeCHHHHHHHHHHHHHhCCCccceEEEeeHHHhcCc--------cccceE
Confidence            56799999999999999999997  35899999998866554432222122223456777776531        247999


Q ss_pred             EEe
Q 008149          523 VIC  525 (576)
Q Consensus       523 VIG  525 (576)
                      |+.
T Consensus       106 Ivs  108 (311)
T d2fyta1         106 IIS  108 (311)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            985

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=95.35  E-value=0.014  Score=51.80  Aligned_cols=79  Identities=22%  Similarity=0.313  Sum_probs=55.6

Q ss_pred             ccccCCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhh
Q 008149          436 LKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIH  515 (576)
Q Consensus       436 LK~~f~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~  515 (576)
                      ++.+.+.+-+|||+=||.|.+...|.+.|.+   |+++|+++...+..+....+.+. ....+..|+.++.-.       
T Consensus        31 ~~~~l~~~~~ILDiGcG~G~~~~~la~~~~~---v~giD~S~~~i~~ak~~~~~~~~-~~~~~~~d~~~l~~~-------   99 (226)
T d1ve3a1          31 LMKYMKKRGKVLDLACGVGGFSFLLEDYGFE---VVGVDISEDMIRKAREYAKSRES-NVEFIVGDARKLSFE-------   99 (226)
T ss_dssp             HHHSCCSCCEEEEETCTTSHHHHHHHHTTCE---EEEEESCHHHHHHHHHHHHHTTC-CCEEEECCTTSCCSC-------
T ss_pred             HHHhcCCCCEEEEECCCcchhhhhHhhhhcc---cccccccccchhhhhhhhccccc-ccccccccccccccc-------
Confidence            3344456679999999999999999999864   68899999988877765443322 222345677766421       


Q ss_pred             ccCCccEEEec
Q 008149          516 KLGSIDFVICQ  526 (576)
Q Consensus       516 ~~g~~DLVIGG  526 (576)
                       -+.||+|+.-
T Consensus       100 -~~~fD~I~~~  109 (226)
T d1ve3a1         100 -DKTFDYVIFI  109 (226)
T ss_dssp             -TTCEEEEEEE
T ss_pred             -CcCceEEEEe
Confidence             2478988853

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=95.30  E-value=0.013  Score=53.75  Aligned_cols=79  Identities=15%  Similarity=0.087  Sum_probs=57.3

Q ss_pred             ccccccCCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHh
Q 008149          434 SVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESL  513 (576)
Q Consensus       434 svLK~~f~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l  513 (576)
                      ..++..-+.+-+|||+=||.|.++..|.++|.+   |+++|+++...+..+......+. ...+..+|+.++..      
T Consensus        29 ~~~~~~~~~~~~vLDiGCG~G~~~~~l~~~g~~---v~GvD~S~~ml~~A~~~~~~~~~-~v~~~~~d~~~~~~------   98 (246)
T d1y8ca_          29 EKCVENNLVFDDYLDLACGTGNLTENLCPKFKN---TWAVDLSQEMLSEAENKFRSQGL-KPRLACQDISNLNI------   98 (246)
T ss_dssp             HHHHTTTCCTTEEEEETCTTSTTHHHHGGGSSE---EEEECSCHHHHHHHHHHHHHTTC-CCEEECCCGGGCCC------
T ss_pred             HHHHHhCCCCCeEEEEeCcCCHHHHHHHHhCCc---cEeeccchhhhhhccccccccCc-cceeeccchhhhcc------
Confidence            334444455668999999999999999999985   57999999987776665443322 23356789887753      


Q ss_pred             hhccCCccEEEe
Q 008149          514 IHKLGSIDFVIC  525 (576)
Q Consensus       514 ~~~~g~~DLVIG  525 (576)
                         .+.||+|+.
T Consensus        99 ---~~~fD~i~~  107 (246)
T d1y8ca_          99 ---NRKFDLITC  107 (246)
T ss_dssp             ---SCCEEEEEE
T ss_pred             ---cccccccce
Confidence               247999983

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

Probab=95.22  E-value=0.011  Score=55.02  Aligned_cols=79  Identities=14%  Similarity=0.132  Sum_probs=54.2

Q ss_pred             cccCCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCC-CCccccccccccChhhHHHhhh
Q 008149          437 KSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQT-GELVQIEDIQALTTKKFESLIH  515 (576)
Q Consensus       437 K~~f~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~-g~l~~~~DI~~lt~~~Ie~l~~  515 (576)
                      +.+.+.+-+||||=||.||...-+...|+.  -|+++|+++.+.+..+..+...+.. ...+..+|+...+..       
T Consensus        19 ~~~~~~~~~VLDlGCG~G~~~~~~~~~~~~--~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~-------   89 (252)
T d1ri5a_          19 RLYTKRGDSVLDLGCGKGGDLLKYERAGIG--EYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMD-------   89 (252)
T ss_dssp             HHHCCTTCEEEEETCTTTTTHHHHHHHTCS--EEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCC-------
T ss_pred             HHhCCCcCEEEEecccCcHHHHHHHHcCCC--eEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcchhhhccc-------
Confidence            344566789999999999999999999874  4789999999987777655433221 122456777544321       


Q ss_pred             ccCCccEEE
Q 008149          516 KLGSIDFVI  524 (576)
Q Consensus       516 ~~g~~DLVI  524 (576)
                      ..+.||+|+
T Consensus        90 ~~~~fD~V~   98 (252)
T d1ri5a_          90 LGKEFDVIS   98 (252)
T ss_dssp             CSSCEEEEE
T ss_pred             ccccceEEE
Confidence            114688887

>d2crna1 a.5.2.1 (A:8-58) Suppressor of T-cell receptor signaling 2 (STS-2) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Suppressor of T-cell receptor signaling 2 (STS-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.10  E-value=0.013  Score=43.58  Aligned_cols=38  Identities=24%  Similarity=0.252  Sum_probs=33.7

Q ss_pred             HHHHHHhcCCCHHHHHHHHHHhCCCCChhhhhHhHhhcc
Q 008149           91 ITLQLLEMGFSENQVSLAIEKFGSKTPISELADKIFSGQ  129 (576)
Q Consensus        91 k~~~L~~MGFseeEas~AI~r~G~da~i~eLvD~I~Aaq  129 (576)
                      -+..|+.|||+++.|..|+-..|.. +++.-++-|++-+
T Consensus         5 ~v~~L~~MGF~~~~a~~Al~~t~n~-~ve~A~~Wl~~h~   42 (51)
T d2crna1           5 LLEPLLAMGFPVHTALKALAATGRK-TAEEALAWLHDHC   42 (51)
T ss_dssp             SHHHHHHTSCCHHHHHHHHHHHTSC-CHHHHHHHHHHHS
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHCCC-CHHHHHHHHHHcC
Confidence            3568999999999999999999885 7999999999765

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.81  E-value=0.02  Score=55.75  Aligned_cols=73  Identities=19%  Similarity=0.241  Sum_probs=49.6

Q ss_pred             CCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCC-ccccccccccChhhHHHhhhccCCcc
Q 008149          443 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGE-LVQIEDIQALTTKKFESLIHKLGSID  521 (576)
Q Consensus       443 ~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~-l~~~~DI~~lt~~~Ie~l~~~~g~~D  521 (576)
                      +-+||||-||.|.+++-+.++|..  .|+++|.++.+..+ +..-...+.... .++.+|+.++.-.        ...+|
T Consensus        39 ~~~VLDlGcGtG~ls~~aa~~Ga~--~V~avd~s~~~~~a-~~~~~~~~~~~~i~~i~~~~~~l~~~--------~~~~D  107 (328)
T d1g6q1_          39 DKIVLDVGCGTGILSMFAAKHGAK--HVIGVDMSSIIEMA-KELVELNGFSDKITLLRGKLEDVHLP--------FPKVD  107 (328)
T ss_dssp             TCEEEEETCTTSHHHHHHHHTCCS--EEEEEESSTHHHHH-HHHHHHTTCTTTEEEEESCTTTSCCS--------SSCEE
T ss_pred             cCEEEEeCCCCCHHHHHHHHhCCC--EEEEEeCCHHHHHH-HHHHHHhCccccceEEEeehhhccCc--------cccee
Confidence            568999999999999999999984  58999999865332 332223332222 2456777766421        14799


Q ss_pred             EEEec
Q 008149          522 FVICQ  526 (576)
Q Consensus       522 LVIGG  526 (576)
                      +|+.-
T Consensus       108 ~i~se  112 (328)
T d1g6q1_         108 IIISE  112 (328)
T ss_dssp             EEEEC
T ss_pred             EEEEE
Confidence            99863

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=94.81  E-value=0.025  Score=50.83  Aligned_cols=73  Identities=18%  Similarity=0.261  Sum_probs=51.7

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 008149          442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  521 (576)
Q Consensus       442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~D  521 (576)
                      .+.+|||+=||.|.++..+.+.|-+   |.++|+++...+..+......+.+...+..+|+.++.-.        .+.||
T Consensus        15 ~~~rVLDiGcG~G~~~~~l~~~~~~---v~gvD~s~~~i~~A~~~~~~~~~~~i~~~~~d~~~l~~~--------~~~fD   83 (231)
T d1vl5a_          15 GNEEVLDVATGGGHVANAFAPFVKK---VVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFT--------DERFH   83 (231)
T ss_dssp             SCCEEEEETCTTCHHHHHHGGGSSE---EEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSC--------TTCEE
T ss_pred             CcCEEEEecccCcHHHHHHHHhCCE---EEEEECCHHHHhhhhhccccccccccccccccccccccc--------ccccc
Confidence            4679999999999999999999853   689999998776665544333333334567888776421        14688


Q ss_pred             EEEe
Q 008149          522 FVIC  525 (576)
Q Consensus       522 LVIG  525 (576)
                      +|+.
T Consensus        84 ~v~~   87 (231)
T d1vl5a_          84 IVTC   87 (231)
T ss_dssp             EEEE
T ss_pred             cccc
Confidence            8874

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=94.76  E-value=0.023  Score=50.67  Aligned_cols=75  Identities=20%  Similarity=0.246  Sum_probs=53.6

Q ss_pred             CcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCccEE
Q 008149          444 LTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDFV  523 (576)
Q Consensus       444 l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~DLV  523 (576)
                      -+||||=||.|.....|.+.|++   |.+||+++.+.+..+.+....+-....+...|+.++..+         +.||+|
T Consensus        32 grvLDiGcG~G~~~~~la~~g~~---v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~d~~~~~~~---------~~fD~I   99 (198)
T d2i6ga1          32 GRTLDLGCGNGRNSLYLAANGYD---VTAWDKNPASMANLERIKAAEGLDNLQTDLVDLNTLTFD---------GEYDFI   99 (198)
T ss_dssp             CEEEEETCTTSHHHHHHHHTTCE---EEEEESCHHHHHHHHHHHHHTTCTTEEEEECCTTTCCCC---------CCEEEE
T ss_pred             CcEEEECCCCCHHHHHHHHHhhh---hccccCcHHHHHHHHHHhhhccccchhhhheeccccccc---------ccccEE
Confidence            38999999999999999999985   678999999988887765443222222344565555431         468999


Q ss_pred             EecCCCC
Q 008149          524 ICQNSVP  530 (576)
Q Consensus       524 IGGpPCQ  530 (576)
                      +.....+
T Consensus       100 ~~~~~~~  106 (198)
T d2i6ga1         100 LSTVVMM  106 (198)
T ss_dssp             EEESCGG
T ss_pred             EEeeeee
Confidence            8765443

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

Probab=94.68  E-value=0.016  Score=52.86  Aligned_cols=68  Identities=13%  Similarity=0.077  Sum_probs=48.4

Q ss_pred             hhhccccccCCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccC
Q 008149          431 YHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALT  506 (576)
Q Consensus       431 ~~lsvLK~~f~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt  506 (576)
                      |.++.+.+++. +-+|||+=||.|.+...|.+.|.+   |.++|+++......+....    .+..+..+|+.++.
T Consensus        10 ~~~~~~~~~~~-~~~VLDiGcG~G~~~~~l~~~g~~---v~giD~s~~~i~~a~~~~~----~~~~~~~~~~~~~~   77 (225)
T d2p7ia1          10 FMVRAFTPFFR-PGNLLELGSFKGDFTSRLQEHFND---ITCVEASEEAISHAQGRLK----DGITYIHSRFEDAQ   77 (225)
T ss_dssp             HHHHHHGGGCC-SSCEEEESCTTSHHHHHHTTTCSC---EEEEESCHHHHHHHHHHSC----SCEEEEESCGGGCC
T ss_pred             HHHHHhhhhCC-CCcEEEEeCCCcHHHHHHHHcCCe---EEEEeCcHHHhhhhhcccc----cccccccccccccc
Confidence            44555566665 458999999999999999999964   6899999998877765321    12234456665543

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.67  E-value=0.021  Score=55.37  Aligned_cols=73  Identities=19%  Similarity=0.219  Sum_probs=49.6

Q ss_pred             CCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCC-CccccccccccChhhHHHhhhccCCcc
Q 008149          443 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGSID  521 (576)
Q Consensus       443 ~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g-~l~~~~DI~~lt~~~Ie~l~~~~g~~D  521 (576)
                      +-+||||.||.|.+++-+.++|-.  .|+++|+++.+..+.+. -..++... ..+..+|+.++...        .+.+|
T Consensus        34 ~~~VLDiGcG~G~ls~~aa~~Ga~--~V~avd~s~~~~~a~~~-~~~n~~~~~v~~~~~~~~~~~~~--------~~~~D  102 (316)
T d1oria_          34 DKVVLDVGSGTGILCMFAAKAGAR--KVIGIECSSISDYAVKI-VKANKLDHVVTIIKGKVEEVELP--------VEKVD  102 (316)
T ss_dssp             TCEEEEETCTTSHHHHHHHHTTCS--EEEEEECSTTHHHHHHH-HHHTTCTTTEEEEESCTTTCCCS--------SSCEE
T ss_pred             cCEEEEEecCCcHHHHHHHHhCCC--EEEEEcCcHHHhhhhhH-HHHhCCccccceEeccHHHcccc--------cceeE
Confidence            467999999999999999999974  48899999876444332 22222222 22456777776531        25799


Q ss_pred             EEEec
Q 008149          522 FVICQ  526 (576)
Q Consensus       522 LVIGG  526 (576)
                      +|+.-
T Consensus       103 ~ivs~  107 (316)
T d1oria_         103 IIISE  107 (316)
T ss_dssp             EEEEC
T ss_pred             EEeee
Confidence            99854

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

Probab=94.59  E-value=0.017  Score=52.03  Aligned_cols=75  Identities=17%  Similarity=0.208  Sum_probs=56.2

Q ss_pred             ccccccCCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHh
Q 008149          434 SVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESL  513 (576)
Q Consensus       434 svLK~~f~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l  513 (576)
                      +.++.+.+.+.+|||+=||.|.+..-|...|.+   |.++|+++...+..+..-      ...++.+|+.++.-.     
T Consensus        34 ~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~---v~giD~s~~~l~~a~~~~------~~~~~~~~~~~l~~~-----   99 (246)
T d2avna1          34 SFLEEYLKNPCRVLDLGGGTGKWSLFLQERGFE---VVLVDPSKEMLEVAREKG------VKNVVEAKAEDLPFP-----   99 (246)
T ss_dssp             HHHHHHCCSCCEEEEETCTTCHHHHHHHTTTCE---EEEEESCHHHHHHHHHHT------CSCEEECCTTSCCSC-----
T ss_pred             HHHHHhcCCCCEEEEECCCCchhcccccccceE---EEEeeccccccccccccc------ccccccccccccccc-----
Confidence            345666777889999999999999999999974   688999999988776531      122456777776421     


Q ss_pred             hhccCCccEEEe
Q 008149          514 IHKLGSIDFVIC  525 (576)
Q Consensus       514 ~~~~g~~DLVIG  525 (576)
                         .+.||+|+.
T Consensus       100 ---~~~fD~ii~  108 (246)
T d2avna1         100 ---SGAFEAVLA  108 (246)
T ss_dssp             ---TTCEEEEEE
T ss_pred             ---cccccceee
Confidence               257999874

>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Adrenal gland protein AD-003 (C9orf32)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.48  E-value=0.014  Score=53.05  Aligned_cols=74  Identities=19%  Similarity=0.118  Sum_probs=50.8

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 008149          442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  521 (576)
Q Consensus       442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~D  521 (576)
                      .+-+||||-||.|++...|...+.  .-|.+||+++......+......+.....++++|+.++...        .+.+|
T Consensus        60 ~~~~vLDiGcG~G~~~~~l~~~~~--~~v~~vD~s~~~l~~ak~~~~~~~~~~~~f~~~d~~~~~~~--------~~~fD  129 (222)
T d2ex4a1          60 GTSCALDCGAGIGRITKRLLLPLF--REVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPE--------PDSYD  129 (222)
T ss_dssp             CCSEEEEETCTTTHHHHHTTTTTC--SEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCC--------SSCEE
T ss_pred             CCCEEEEeccCCCHhhHHHHHhcC--CEEEEeecCHHHhhccccccccccccccccccccccccccc--------ccccc
Confidence            356899999999999988765554  34789999999887777655433222223566788776531        24788


Q ss_pred             EEEe
Q 008149          522 FVIC  525 (576)
Q Consensus       522 LVIG  525 (576)
                      +|+.
T Consensus       130 ~I~~  133 (222)
T d2ex4a1         130 VIWI  133 (222)
T ss_dssp             EEEE
T ss_pred             cccc
Confidence            8874

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

Probab=94.43  E-value=0.032  Score=50.80  Aligned_cols=78  Identities=13%  Similarity=0.219  Sum_probs=55.3

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 008149          442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  521 (576)
Q Consensus       442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~D  521 (576)
                      .+.+|||+=||.|.+...|.+.|.+   |.+||+++...+..+.+-...+.....+..+|+.++.-.        -+.||
T Consensus        16 ~~~rILDiGcGtG~~~~~la~~~~~---v~gvD~S~~~l~~A~~~~~~~~~~~~~~~~~d~~~~~~~--------~~~fD   84 (234)
T d1xxla_          16 AEHRVLDIGAGAGHTALAFSPYVQE---CIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFP--------DDSFD   84 (234)
T ss_dssp             TTCEEEEESCTTSHHHHHHGGGSSE---EEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSC--------TTCEE
T ss_pred             CCCEEEEeCCcCcHHHHHHHHhCCe---EEEEeCChhhhhhhhhhhccccccccccccccccccccc--------ccccc
Confidence            4789999999999999999998853   689999988776665544333222334567788776421        25799


Q ss_pred             EEEecCCCC
Q 008149          522 FVICQNSVP  530 (576)
Q Consensus       522 LVIGGpPCQ  530 (576)
                      +|+...-.+
T Consensus        85 ~v~~~~~l~   93 (234)
T d1xxla_          85 IITCRYAAH   93 (234)
T ss_dssp             EEEEESCGG
T ss_pred             eeeeeceee
Confidence            999755443

>d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: DNA methylase TaqI, N-terminal domain
domain: DNA methylase TaqI, N-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=93.85  E-value=0.025  Score=50.47  Aligned_cols=73  Identities=8%  Similarity=-0.009  Sum_probs=48.5

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 008149          442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  521 (576)
Q Consensus       442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~D  521 (576)
                      .+-+|||.+||.|+|.+++...-..-..+.++|+++.+.+..         ....++.+|-....         ....+|
T Consensus        19 ~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~~---------~~~~~~~~~~~~~~---------~~~~fd   80 (223)
T d2ih2a1          19 RGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP---------PWAEGILADFLLWE---------PGEAFD   80 (223)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC---------TTEEEEESCGGGCC---------CSSCEE
T ss_pred             CcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhhc---------ccceeeeeehhccc---------cccccc
Confidence            457899999999999888865433445588999999864221         11123344433222         235799


Q ss_pred             EEEecCCCCCc
Q 008149          522 FVICQNSVPQI  532 (576)
Q Consensus       522 LVIGGpPCQ~F  532 (576)
                      ++++-||.-..
T Consensus        81 ~ii~npP~~~~   91 (223)
T d2ih2a1          81 LILGNPPYGIV   91 (223)
T ss_dssp             EEEECCCCCCB
T ss_pred             eecccCccccc
Confidence            99999998554

>d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Thermotoga maritima [TaxId: 2336]

Probab=93.82  E-value=0.07  Score=51.44  Aligned_cols=82  Identities=16%  Similarity=0.214  Sum_probs=56.5

Q ss_pred             CCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCc-cccccccccChhhHHHhhhccCCcc
Q 008149          443 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGEL-VQIEDIQALTTKKFESLIHKLGSID  521 (576)
Q Consensus       443 ~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l-~~~~DI~~lt~~~Ie~l~~~~g~~D  521 (576)
                      ..+++|+-||.|...+++.... + ..|+++|+++.|..+-+.|-...+-.... ++.+|..+..       ....+.||
T Consensus       111 ~~~vld~g~GsG~i~~~la~~~-~-~~v~a~Dis~~Al~~A~~Na~~~~~~~~~~i~~~~~~~~~-------~~~~~~fD  181 (271)
T d1nv8a_         111 IKTVADIGTGSGAIGVSVAKFS-D-AIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPF-------KEKFASIE  181 (271)
T ss_dssp             CCEEEEESCTTSHHHHHHHHHS-S-CEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGG-------GGGTTTCC
T ss_pred             ccEEEEeeeeeehhhhhhhhcc-c-ceeeechhhhhHHHHHHHHHHHcCCCceeEEeeccccccc-------ccccCccc
Confidence            3579999999998887776543 3 34789999999999998876544322221 2334443321       22347899


Q ss_pred             EEEecCCCCCcc
Q 008149          522 FVICQNSVPQIP  533 (576)
Q Consensus       522 LVIGGpPCQ~FS  533 (576)
                      +|+.-||.-+-+
T Consensus       182 lIVsNPPYI~~~  193 (271)
T d1nv8a_         182 MILSNPPYVKSS  193 (271)
T ss_dssp             EEEECCCCBCGG
T ss_pred             EEEEcccccCcc
Confidence            999999998754

>d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: NOL1R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.34  E-value=0.08  Score=51.13  Aligned_cols=88  Identities=10%  Similarity=0.154  Sum_probs=59.0

Q ss_pred             CCCcccccCCCCChhHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 008149          442 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI  520 (576)
Q Consensus       442 ~~l~VLsLFSGiGG~slGL~~a-Gi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~  520 (576)
                      .+-+|||+.||-||=+..+..+ +=. ..++|+|+++.-.+.++.+....+.....+...|-..+....     ..++.|
T Consensus        94 ~g~~vLD~cAapGgKt~~la~l~~~~-~~i~a~d~~~~R~~~l~~~l~r~g~~~~~~~~~d~~~~~~~~-----~~~~~f  167 (293)
T d2b9ea1          94 PGSHVIDACAAPGNKTSHLAALLKNQ-GKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSD-----PRYHEV  167 (293)
T ss_dssp             TTCEEEESSCTTCHHHHHHHHHHTTC-SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTTC-----GGGTTE
T ss_pred             ccceEEecccchhhHHHHHHHHhcCC-ceEeeecCCHHHHHHHHHHHHhcCccceeeeehhhhhhcccc-----ccccee
Confidence            3678999999999977665533 211 247899999998888888776554333334455666555422     234789


Q ss_pred             cEEEecCCCCCcccc
Q 008149          521 DFVICQNSVPQIPNS  535 (576)
Q Consensus       521 DLVIGGpPCQ~FS~a  535 (576)
                      |.|+-=+||.+....
T Consensus       168 D~VL~DaPCSg~G~~  182 (293)
T d2b9ea1         168 HYILLDPSCSGSGMP  182 (293)
T ss_dssp             EEEEECCCCCC----
T ss_pred             eEEeecCcccchhhh
Confidence            999999999987754

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=93.20  E-value=0.079  Score=49.64  Aligned_cols=76  Identities=18%  Similarity=0.270  Sum_probs=53.6

Q ss_pred             CCCCCcccccCCCCChhHHHHHH-cCCceeeEEEeeCCHHHHHHHHHHhhhcCCCC-CccccccccccChhhHHHhhhcc
Q 008149          440 FPGGLTMLSVFSGIGGAEVTLHR-LGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKL  517 (576)
Q Consensus       440 f~~~l~VLsLFSGiGG~slGL~~-aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g-~l~~~~DI~~lt~~~Ie~l~~~~  517 (576)
                      .+.+.+|||+=||.|++..-|.+ .|..   |+++|+++......+.+....+... ..++.+|+.++.-.        .
T Consensus        65 l~~~~~vLDiGcG~G~~~~~la~~~~~~---v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~~~l~~~--------~  133 (282)
T d2o57a1          65 LQRQAKGLDLGAGYGGAARFLVRKFGVS---IDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPCE--------D  133 (282)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHHCCE---EEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSSC--------T
T ss_pred             CCCCCEEEEeCCCCcHHHhhhhccCCcE---EEEEeccchhhhhhhccccccccccccccccccccccccc--------c
Confidence            35678999999999999988865 4753   6799999998877777665443222 22556777776421        2


Q ss_pred             CCccEEEec
Q 008149          518 GSIDFVICQ  526 (576)
Q Consensus       518 g~~DLVIGG  526 (576)
                      +.||+|+..
T Consensus       134 ~sfD~V~~~  142 (282)
T d2o57a1         134 NSYDFIWSQ  142 (282)
T ss_dssp             TCEEEEEEE
T ss_pred             cccchhhcc
Confidence            578988853

>d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Methyltransferase 10 domain
domain: Methyltransferase 10 domain containing protein METT10D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.47  E-value=0.13  Score=48.47  Aligned_cols=86  Identities=13%  Similarity=0.052  Sum_probs=51.9

Q ss_pred             CCCCcccccCCCCChhHHHHH--HcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCc-cccccccccChhhHHHhhhcc
Q 008149          441 PGGLTMLSVFSGIGGAEVTLH--RLGIKLKGVISIETSETNRRILKRWWESSGQTGEL-VQIEDIQALTTKKFESLIHKL  517 (576)
Q Consensus       441 ~~~l~VLsLFSGiGG~slGL~--~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l-~~~~DI~~lt~~~Ie~l~~~~  517 (576)
                      ...+++||+=+|.|...+.|-  .-+.+   ++++||++.|.++-+.+-..++-.... +...+....--+.+..  ...
T Consensus        60 ~~~~~~LDiGtGsg~I~~~l~~~~~~~~---~~~~Di~~~al~~A~~N~~~n~l~~~~~~~~~~~~~~~~~~~~~--~~~  134 (250)
T d2h00a1          60 STLRRGIDIGTGASCIYPLLGATLNGWY---FLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKE--ESE  134 (250)
T ss_dssp             CCCCEEEEESCTTTTHHHHHHHHHHCCE---EEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTT--CCS
T ss_pred             cccceEEEeCCCchHHHHHHHHhCCCcc---ccceecCHHHHHHHHHHHHHhCCCcceeeeeeccHHhhhhhhhh--ccc
Confidence            345889999999998776544  44553   789999999999988876554322221 1111211111111100  112


Q ss_pred             CCccEEEecCCCCC
Q 008149          518 GSIDFVICQNSVPQ  531 (576)
Q Consensus       518 g~~DLVIGGpPCQ~  531 (576)
                      +.||+|+.=||=-+
T Consensus       135 ~~fD~ivsNPPY~~  148 (250)
T d2h00a1         135 IIYDFCMCNPPFFA  148 (250)
T ss_dssp             CCBSEEEECCCCC-
T ss_pred             CceeEEEecCcccc
Confidence            57999999998654

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=92.46  E-value=0.11  Score=47.63  Aligned_cols=91  Identities=21%  Similarity=0.227  Sum_probs=59.6

Q ss_pred             cchhhhccccccCCCCCcccccCCCCChhHHHHHH-cCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccC
Q 008149          428 TLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHR-LGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALT  506 (576)
Q Consensus       428 tv~~~lsvLK~~f~~~l~VLsLFSGiGG~slGL~~-aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt  506 (576)
                      .++..+..|.  ...+.+|||+=||.|.++..+.+ .|=. -.|+++|+++.....-+.+....+.....+..+|..+.-
T Consensus        63 ~~a~~l~~l~--l~~g~~VLdiG~GtG~~s~~la~~~~~~-g~V~~id~~~~~~~~a~~~~~~~~~~n~~~~~~d~~~~~  139 (213)
T d1dl5a1          63 LMALFMEWVG--LDKGMRVLEIGGGTGYNAAVMSRVVGEK-GLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGV  139 (213)
T ss_dssp             HHHHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHHCTT-CEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCC
T ss_pred             hhHHHHHhhh--ccccceEEEecCccchhHHHHHHHhCCC-CcEEEeecchhhHHHhhhhHhhhcccccccccCchHHcc
Confidence            3455555553  34588999999999999988754 4422 248899999998877777665443333334456665433


Q ss_pred             hhhHHHhhhccCCccEEEecCCC
Q 008149          507 TKKFESLIHKLGSIDFVICQNSV  529 (576)
Q Consensus       507 ~~~Ie~l~~~~g~~DLVIGGpPC  529 (576)
                      .        ..+.||+|+-+..+
T Consensus       140 ~--------~~~~fD~I~~~~~~  154 (213)
T d1dl5a1         140 P--------EFSPYDVIFVTVGV  154 (213)
T ss_dssp             G--------GGCCEEEEEECSBB
T ss_pred             c--------cccchhhhhhhccH
Confidence            2        12579999865543

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.29  E-value=0.073  Score=48.52  Aligned_cols=42  Identities=19%  Similarity=0.175  Sum_probs=36.8

Q ss_pred             CCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHH
Q 008149          441 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKR  485 (576)
Q Consensus       441 ~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~  485 (576)
                      +.+.+|||+=||.|-.++-|.+.|++   |++||+++.+.+..+.
T Consensus        44 ~~~~rvLd~GCG~G~~a~~LA~~G~~---V~gvD~S~~ai~~a~~   85 (229)
T d2bzga1          44 KSGLRVFFPLCGKAVEMKWFADRGHS---VVGVEISELGIQEFFT   85 (229)
T ss_dssp             CCSCEEEETTCTTCTHHHHHHHTTCE---EEEECSCHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCcHHHHHHHhCCCc---EEEEeCCHHHHHHHHH
Confidence            35679999999999999999999995   6899999999876654

>d1ttea1 a.5.2.1 (A:161-215) Ubiquitin-protein ligase ubc1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Ubiquitin-protein ligase ubc1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.14  E-value=0.064  Score=40.35  Aligned_cols=41  Identities=12%  Similarity=0.238  Sum_probs=33.2

Q ss_pred             cchhhhhHHHhcCCCChHHHHHHHHHhCCC-------CcHHHHHHHHH
Q 008149           14 GLHIEKRASLLMMNFSVNEVDFALDKLGKD-------APVYELVDFIT   54 (576)
Q Consensus        14 ~~~s~~r~~li~MGFs~e~V~kAIqe~Ge~-------~~~~~Ile~Ll   54 (576)
                      ++-.+...+|..||||..-|.-|++.+|=.       ...+.|||-||
T Consensus         7 Gid~~~V~~f~~mGF~rdKvI~VLrrlgik~~~~~~~~~~n~ilEELL   54 (55)
T d1ttea1           7 GIDHDLIDEFESQGFEKDKIVEVLRRLGVKSLDPNDNNTANRIIEELL   54 (55)
T ss_dssp             CCSHHHHHHHHHHTCCHHHHHHHHHHSCCSSCCSSCCHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHcCCCchhHHHHHHHhCcCCCCcccchHHHHHHHHHh
Confidence            345678899999999999999999999854       24567888776

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=91.23  E-value=0.15  Score=46.63  Aligned_cols=72  Identities=25%  Similarity=0.235  Sum_probs=50.0

Q ss_pred             CCcccccCCCCChhHHHHHH-cCCceeeEEEeeCCHHHHHHHHHHhhhcCCCC-CccccccccccChhhHHHhhhccCCc
Q 008149          443 GLTMLSVFSGIGGAEVTLHR-LGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGSI  520 (576)
Q Consensus       443 ~l~VLsLFSGiGG~slGL~~-aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g-~l~~~~DI~~lt~~~Ie~l~~~~g~~  520 (576)
                      +.+|||+=||.|++...+.+ .|..   |++||+++.....-+......+-.. ..++.+|+.++..+         +.|
T Consensus        34 g~~VLDiGCG~G~~~~~la~~~~~~---v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~~~d~~~~~~~---------~~f  101 (245)
T d1nkva_          34 GTRILDLGSGSGEMLCTWARDHGIT---GTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVAN---------EKC  101 (245)
T ss_dssp             TCEEEEETCTTCHHHHHHHHHTCCE---EEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCCS---------SCE
T ss_pred             CCEEEEEcCCCCHHHHHHHHhcCCE---EEEEecccchhhHHHHHHHHhhccccchhhhhHHhhcccc---------Cce
Confidence            68899999999999988755 5753   6899999988777776654443222 22456787765431         467


Q ss_pred             cEEEec
Q 008149          521 DFVICQ  526 (576)
Q Consensus       521 DLVIGG  526 (576)
                      |+|+..
T Consensus       102 D~v~~~  107 (245)
T d1nkva_         102 DVAACV  107 (245)
T ss_dssp             EEEEEE
T ss_pred             eEEEEE
Confidence            887743

>d2cosa1 a.5.2.1 (A:8-48) Serine/threonine protein kinase LATS2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Serine/threonine protein kinase LATS2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.06  E-value=0.086  Score=36.73  Aligned_cols=33  Identities=15%  Similarity=0.265  Sum_probs=29.2

Q ss_pred             HHhcCCCChHHHHHHHHHhCCCCcHHHHHHHHHH
Q 008149           22 SLLMMNFSVNEVDFALDKLGKDAPVYELVDFITA   55 (576)
Q Consensus        22 ~li~MGFs~e~V~kAIqe~Ge~~~~~~Ile~Ll~   55 (576)
                      .|..-||.++||.+|+++.|... ++.-+|||-.
T Consensus         8 dl~~aG~D~~m~iral~qt~~rs-ieaaie~isk   40 (41)
T d2cosa1           8 ELVNAGCDQEMAGRALKQTGSRS-IEAALEYISK   40 (41)
T ss_dssp             HHHHHHCCHHHHHHHHHHHTSCC-HHHHHHHHHH
T ss_pred             HHHHcCCCHHHHHHHHHHhCccc-HHHHHHHHhc
Confidence            45678999999999999999988 9999999853

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=91.04  E-value=0.2  Score=42.74  Aligned_cols=50  Identities=22%  Similarity=0.118  Sum_probs=41.4

Q ss_pred             hhccccccCCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHH
Q 008149          432 HLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRW  486 (576)
Q Consensus       432 ~lsvLK~~f~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~  486 (576)
                      +|+.|.  .+.+-+|||+=||.|-..+-|.+.|+.   |.++|+++...+..+..
T Consensus        12 ~~~~l~--~~~~~rvLd~GCG~G~~a~~la~~G~~---V~gvD~S~~~i~~a~~~   61 (201)
T d1pjza_          12 YWSSLN--VVPGARVLVPLCGKSQDMSWLSGQGYH---VVGAELSEAAVERYFTE   61 (201)
T ss_dssp             HHHHHC--CCTTCEEEETTTCCSHHHHHHHHHCCE---EEEEEECHHHHHHHHHH
T ss_pred             HHHHcC--CCCCCEEEEecCcCCHHHHHHHHcCCc---eEeecccHHHHHHHHHH
Confidence            355553  346789999999999999999999985   68999999999888764

>d1veka_ a.5.2.1 (A:) Ubiquitin isopeptidase T {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Ubiquitin isopeptidase T
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=90.49  E-value=0.14  Score=41.36  Aligned_cols=39  Identities=28%  Similarity=0.337  Sum_probs=34.0

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHhCCCCChhhhhHhHhhcc
Q 008149           90 EITLQLLEMGFSENQVSLAIEKFGSKTPISELADKIFSGQ  129 (576)
Q Consensus        90 ~k~~~L~~MGFseeEas~AI~r~G~da~i~eLvD~I~Aaq  129 (576)
                      +.+.+|+.|||+++.|..||-.-|. .+++.-++.|++-+
T Consensus        31 ~~v~~L~~MGF~~~~a~~AL~~t~n-~~~e~A~~Wl~~h~   69 (84)
T d1veka_          31 EIVAQLVSMGFSQLHCQKAAINTSN-AGVEEAMNWLLSHM   69 (84)
T ss_dssp             HHHHHHHHHTCCHHHHHHHHHHTTT-CCHHHHHHHHHHHT
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHcC-CCHHHHHHHHHHcC
Confidence            4556899999999999999999777 48999999999866

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=90.35  E-value=0.26  Score=45.83  Aligned_cols=83  Identities=16%  Similarity=0.130  Sum_probs=55.2

Q ss_pred             CCCCcccccCCCCChhHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCC
Q 008149          441 PGGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGS  519 (576)
Q Consensus       441 ~~~l~VLsLFSGiGG~slGL~~a-Gi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~  519 (576)
                      ..|.+||||-||.|++..-|.+. |-. -.|+++|+++...+.++..-...  .....+..|......     +......
T Consensus        72 ~pG~~VLDlGaGsG~~t~~la~~VG~~-G~V~aVD~s~~~l~~a~~~a~~~--~~~~~i~~d~~~~~~-----~~~~~~~  143 (227)
T d1g8aa_          72 KPGKSVLYLGIASGTTASHVSDIVGWE-GKIFGIEFSPRVLRELVPIVEER--RNIVPILGDATKPEE-----YRALVPK  143 (227)
T ss_dssp             CTTCEEEEETTTSTTHHHHHHHHHCTT-SEEEEEESCHHHHHHHHHHHSSC--TTEEEEECCTTCGGG-----GTTTCCC
T ss_pred             CCCCEEEEeccCCCHHHHHHHHHhCCC-CEEEEEeCcHHHHHHHHHHHHhc--CCceEEEEECCCccc-----ccccccc
Confidence            34899999999999999888763 432 24899999999988887653221  122233455544332     1112367


Q ss_pred             ccEEEecCCCCC
Q 008149          520 IDFVICQNSVPQ  531 (576)
Q Consensus       520 ~DLVIGGpPCQ~  531 (576)
                      +|+|+-..||.+
T Consensus       144 vD~i~~d~~~~~  155 (227)
T d1g8aa_         144 VDVIFEDVAQPT  155 (227)
T ss_dssp             EEEEEECCCSTT
T ss_pred             eEEEEEEccccc
Confidence            899998888765

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

Probab=90.16  E-value=0.23  Score=46.54  Aligned_cols=70  Identities=11%  Similarity=0.094  Sum_probs=50.9

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 008149          442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  521 (576)
Q Consensus       442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~D  521 (576)
                      .+.+|||+=||.|.+...|.+++-.. .++++|+++.+.+..+...     +...+..+|+.++.-.        -+.||
T Consensus        84 ~~~~iLDiGcG~G~~~~~l~~~~~~~-~~~giD~s~~~~~~a~~~~-----~~~~~~~~d~~~l~~~--------~~sfD  149 (268)
T d1p91a_          84 KATAVLDIGCGEGYYTHAFADALPEI-TTFGLDVSKVAIKAAAKRY-----PQVTFCVASSHRLPFS--------DTSMD  149 (268)
T ss_dssp             TCCEEEEETCTTSTTHHHHHHTCTTS-EEEEEESCHHHHHHHHHHC-----TTSEEEECCTTSCSBC--------TTCEE
T ss_pred             CCCEEEEeCCCCcHHHHHHHHHCCCC-EEEEecchHhhhhhhhccc-----ccccceeeehhhccCC--------CCCEE
Confidence            56789999999999999999886543 4679999999877665432     2233456888877532        14688


Q ss_pred             EEEe
Q 008149          522 FVIC  525 (576)
Q Consensus       522 LVIG  525 (576)
                      +|+.
T Consensus       150 ~v~~  153 (268)
T d1p91a_         150 AIIR  153 (268)
T ss_dssp             EEEE
T ss_pred             EEee
Confidence            8873

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=89.95  E-value=0.26  Score=46.68  Aligned_cols=89  Identities=19%  Similarity=0.156  Sum_probs=56.3

Q ss_pred             hhhhccccccCCCCCcccccCCCCChhHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHhhhcCCCC-CccccccccccCh
Q 008149          430 GYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTT  507 (576)
Q Consensus       430 ~~~lsvLK~~f~~~l~VLsLFSGiGG~slGL~~a-Gi~~k~vvavEid~~a~~t~k~~~~~tn~~g-~l~~~~DI~~lt~  507 (576)
                      ++.+..| +.. .+.+|||+=||.|++++.|.++ |-. -.|.++|+++...+..+.++....... ..+..+|+.+.-.
T Consensus        75 ~~Ii~~l-~i~-pG~rVLEiG~GsG~lt~~la~~v~~~-g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~~~~  151 (250)
T d1yb2a1          75 SYIIMRC-GLR-PGMDILEVGVGSGNMSSYILYALNGK-GTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFIS  151 (250)
T ss_dssp             ------C-CCC-TTCEEEEECCTTSHHHHHHHHHHTTS-SEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCCC
T ss_pred             HHHHHHc-CCC-CcCEEEEeeeeCcHHHHHHHHHhCCC-cEEEEEECCHHHHHHHHHHHHHhcCCCceEEEEeeeecccc
Confidence            4444433 333 4789999999999999998875 422 248899999998888887775432212 2245577765432


Q ss_pred             hhHHHhhhccCCccEEEecCCCC
Q 008149          508 KKFESLIHKLGSIDFVICQNSVP  530 (576)
Q Consensus       508 ~~Ie~l~~~~g~~DLVIGGpPCQ  530 (576)
                      +         +.||.|+-..|..
T Consensus       152 ~---------~~fD~V~ld~p~p  165 (250)
T d1yb2a1         152 D---------QMYDAVIADIPDP  165 (250)
T ss_dssp             S---------CCEEEEEECCSCG
T ss_pred             c---------ceeeeeeecCCch
Confidence            1         4689998766643

>d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RNA methyltransferase FtsJ
domain: RNA methyltransferase FtsJ
species: Escherichia coli [TaxId: 562]

Probab=89.71  E-value=0.15  Score=45.97  Aligned_cols=82  Identities=16%  Similarity=0.143  Sum_probs=53.0

Q ss_pred             CCCCCcccccCCCCChhHHHH-HHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccC
Q 008149          440 FPGGLTMLSVFSGIGGAEVTL-HRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLG  518 (576)
Q Consensus       440 f~~~l~VLsLFSGiGG~slGL-~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g  518 (576)
                      +..+.+||||=|+-||.+..+ ++.+-. ..++++|+.+..           ..++..++.+||.+.............+
T Consensus        20 ~k~~~~vlDLg~aPGgw~q~~~~~~~~~-~~v~~vDl~~~~-----------~i~~~~~~~~d~~~~~~~~~~~~~~~~~   87 (180)
T d1ej0a_          20 FKPGMTVVDLGAAPGGWSQYVVTQIGGK-GRIIACDLLPMD-----------PIVGVDFLQGDFRDELVMKALLERVGDS   87 (180)
T ss_dssp             CCTTCEEEEESCTTCHHHHHHHHHHCTT-CEEEEEESSCCC-----------CCTTEEEEESCTTSHHHHHHHHHHHTTC
T ss_pred             cCCCCeEEEEeccCCcceEEEEeecccc-ceEEEeeccccc-----------ccCCceEeecccccchhhhhhhhhccCc
Confidence            456889999999999998754 455543 457899988752           2345556778887644322211112236


Q ss_pred             CccEEE--ecCCCCCcc
Q 008149          519 SIDFVI--CQNSVPQIP  533 (576)
Q Consensus       519 ~~DLVI--GGpPCQ~FS  533 (576)
                      .+|||+  |+|.|++-.
T Consensus        88 ~~DlVlSD~ap~~sg~~  104 (180)
T d1ej0a_          88 KVQVVMSDMAPNMSGTP  104 (180)
T ss_dssp             CEEEEEECCCCCCCSCH
T ss_pred             ceeEEEecccchhcccc
Confidence            899998  566665543

>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810)
species: Leishmania major [TaxId: 5664]

Probab=89.48  E-value=0.16  Score=47.52  Aligned_cols=78  Identities=15%  Similarity=0.051  Sum_probs=53.8

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 008149          442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  521 (576)
Q Consensus       442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~D  521 (576)
                      ...+|||+=||+|.++..|-..++  ..|.+||+++...+..+......  +...+...|+++++..        -+.+|
T Consensus        93 ~~~~vLD~GcG~G~~t~~ll~~~~--~~v~~vD~s~~~l~~a~~~~~~~--~~~~~~~~d~~~~~~~--------~~~fD  160 (254)
T d1xtpa_          93 GTSRALDCGAGIGRITKNLLTKLY--ATTDLLEPVKHMLEEAKRELAGM--PVGKFILASMETATLP--------PNTYD  160 (254)
T ss_dssp             CCSEEEEETCTTTHHHHHTHHHHC--SEEEEEESCHHHHHHHHHHTTTS--SEEEEEESCGGGCCCC--------SSCEE
T ss_pred             CCCeEEEecccCChhhHHHHhhcC--ceEEEEcCCHHHHHhhhcccccc--ccceeEEccccccccC--------CCccc
Confidence            457899999999999988665554  35789999999988887654322  1122456777776532        25789


Q ss_pred             EEEecCCCCC
Q 008149          522 FVICQNSVPQ  531 (576)
Q Consensus       522 LVIGGpPCQ~  531 (576)
                      +|+.....+-
T Consensus       161 ~I~~~~vl~h  170 (254)
T d1xtpa_         161 LIVIQWTAIY  170 (254)
T ss_dssp             EEEEESCGGG
T ss_pred             eEEeeccccc
Confidence            9987654443

>d1z96a1 a.5.2.1 (A:295-332) UBA-domain protein mud1 {Schizosaccharomyces pombe [TaxId: 4896]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: UBA-domain protein mud1
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=89.42  E-value=0.24  Score=33.53  Aligned_cols=26  Identities=23%  Similarity=0.356  Sum_probs=23.4

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHhCCC
Q 008149           90 EITLQLLEMGFSENQVSLAIEKFGSK  115 (576)
Q Consensus        90 ~k~~~L~~MGFseeEas~AI~r~G~d  115 (576)
                      .|+.+|+.|||..-|+..|++-..-|
T Consensus         4 skiaqlvsmgfdpleaaqaldaangd   29 (38)
T d1z96a1           4 SKIAQLVSMGFDPLEAAQALDAANGD   29 (38)
T ss_dssp             HHHHHHHHTTCCHHHHHHHHHHTTTC
T ss_pred             hHHHHHHHcCCCHHHHHHHHhhhcCc
Confidence            38889999999999999999987766

>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Bacillus subtilis [TaxId: 1423]

Probab=88.77  E-value=0.53  Score=42.84  Aligned_cols=83  Identities=18%  Similarity=0.057  Sum_probs=58.2

Q ss_pred             CcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCccEE
Q 008149          444 LTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDFV  523 (576)
Q Consensus       444 l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~DLV  523 (576)
                      ..|||+=||.|.+.+.+.+..=+ ..+++||+++.............+-....+..+|+..+. +.+     ..+.+|.|
T Consensus        31 PlvLeIGcG~G~~~~~lA~~~p~-~~~iGiD~~~~~i~~a~~~~~~~~l~Nv~~~~~Da~~l~-~~~-----~~~~~d~v  103 (204)
T d2fcaa1          31 PIHIEVGTGKGQFISGMAKQNPD-INYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLT-DVF-----EPGEVKRV  103 (204)
T ss_dssp             CEEEEECCTTSHHHHHHHHHCTT-SEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHH-HHC-----CTTSCCEE
T ss_pred             ceEEEEEecCcHHHHHHHHhCCC-CcEEEeecchHHHHHHHHHHHHHhccCchhcccchhhhh-ccc-----Cchhhhcc
Confidence            45899999999999988877533 357899999998776655544443333445678887653 112     12678999


Q ss_pred             EecCCCCCcc
Q 008149          524 ICQNSVPQIP  533 (576)
Q Consensus       524 IGGpPCQ~FS  533 (576)
                      .--+|+.-+.
T Consensus       104 ~i~fp~P~~k  113 (204)
T d2fcaa1         104 YLNFSDPWPK  113 (204)
T ss_dssp             EEESCCCCCS
T ss_pred             ccccccccch
Confidence            8888887765

>d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TRM1-like
domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=88.69  E-value=0.2  Score=50.18  Aligned_cols=46  Identities=17%  Similarity=0.061  Sum_probs=38.2

Q ss_pred             CCCcccccCCCCChhHH-HHHHcCCceeeEEEeeCCHHHHHHHHHHhhh
Q 008149          442 GGLTMLSVFSGIGGAEV-TLHRLGIKLKGVISIETSETNRRILKRWWES  489 (576)
Q Consensus       442 ~~l~VLsLFSGiGG~sl-GL~~aGi~~k~vvavEid~~a~~t~k~~~~~  489 (576)
                      ++.+|||.|||.|+.++ ....+|.  +-|+++|+|+.|....+.+-.-
T Consensus        45 ~~~~vLD~~sasG~rsiRya~E~~~--~~V~~nDis~~A~~~i~~N~~l   91 (375)
T d2dula1          45 NPKIVLDALSATGIRGIRFALETPA--EEVWLNDISEDAYELMKRNVML   91 (375)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHSSC--SEEEEEESCHHHHHHHHHHHHH
T ss_pred             CCCEEEEcCCCccHHHHHHHHhCCC--CEEEEecCCHHHHHHHHHHHHh
Confidence            35789999999999998 4556776  4689999999999999987653

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=87.19  E-value=0.55  Score=41.99  Aligned_cols=49  Identities=12%  Similarity=0.180  Sum_probs=37.4

Q ss_pred             ccccCCCCCcccccCCCCChhHHHHHHc----CCceeeEEEeeCCHHHHHHHHHHh
Q 008149          436 LKSMFPGGLTMLSVFSGIGGAEVTLHRL----GIKLKGVISIETSETNRRILKRWW  487 (576)
Q Consensus       436 LK~~f~~~l~VLsLFSGiGG~slGL~~a----Gi~~k~vvavEid~~a~~t~k~~~  487 (576)
                      ++.+.+.+-+||||=||.|.++..|.+.    |.   -|.++|+++...+..+..-
T Consensus        33 ~~~~~~~~~~vLDlGCGtG~~~~~l~~~~~~~~~---~v~giD~S~~ml~~A~~~~   85 (225)
T d1im8a_          33 AERFVTADSNVYDLGCSRGAATLSARRNINQPNV---KIIGIDNSQPMVERCRQHI   85 (225)
T ss_dssp             HHHHCCTTCEEEEESCTTCHHHHHHHHTCCCSSC---EEEEECSCHHHHHHHHHHH
T ss_pred             HHHhcCCCCEEEEeccchhhHHHHHHHhhcCCCC---ceEEeCCCHHHHHHHHHHh
Confidence            3445566789999999999999888653    44   3688999999877766543

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

Probab=87.08  E-value=0.31  Score=45.88  Aligned_cols=81  Identities=14%  Similarity=0.104  Sum_probs=54.0

Q ss_pred             CCCCcccccCCCCChhHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCC
Q 008149          441 PGGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGS  519 (576)
Q Consensus       441 ~~~l~VLsLFSGiGG~slGL~~a-Gi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~  519 (576)
                      .++.+|||+=||.|.+..-|... +-. ..|.++|+++...+..+......+. ...+...|+.++..         .+.
T Consensus        26 ~~~~~ILDiGcG~G~~~~~la~~~~~~-~~v~giD~s~~~l~~a~~~~~~~~~-~~~f~~~d~~~~~~---------~~~   94 (281)
T d2gh1a1          26 TKPVHIVDYGCGYGYLGLVLMPLLPEG-SKYTGIDSGETLLAEARELFRLLPY-DSEFLEGDATEIEL---------NDK   94 (281)
T ss_dssp             CSCCEEEEETCTTTHHHHHHTTTSCTT-CEEEEEECCHHHHHHHHHHHHSSSS-EEEEEESCTTTCCC---------SSC
T ss_pred             CCcCEEEEecCcCCHHHHHHHHhCCCC-CEEEEEecchhHhhhhhcccccccc-cccccccccccccc---------cCC
Confidence            45789999999999988877653 111 2368899999988877766543321 12245677776642         146


Q ss_pred             ccEEEecCCCCCc
Q 008149          520 IDFVICQNSVPQI  532 (576)
Q Consensus       520 ~DLVIGGpPCQ~F  532 (576)
                      ||+|+...-++-+
T Consensus        95 fD~v~~~~~l~~~  107 (281)
T d2gh1a1          95 YDIAICHAFLLHM  107 (281)
T ss_dssp             EEEEEEESCGGGC
T ss_pred             ceEEEEehhhhcC
Confidence            9999977654433

>d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.PvuII N4 cytosine-specific DNA methyltransferase
species: Proteus vulgaris [TaxId: 585]

Probab=86.59  E-value=0.17  Score=46.85  Aligned_cols=44  Identities=16%  Similarity=0.106  Sum_probs=37.0

Q ss_pred             CCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHh
Q 008149          441 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWW  487 (576)
Q Consensus       441 ~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~  487 (576)
                      +.+-.|||.|+|.|..-+|.+++|-+   .+++|+++...++-+.-+
T Consensus       249 ~~gdiVlDpF~GSGTT~~AA~~lgR~---~Ig~El~~~y~~~a~~Rl  292 (320)
T d1booa_         249 EPDDLVVDIFGGSNTTGLVAERESRK---WISFEMKPEYVAASAFRF  292 (320)
T ss_dssp             CTTCEEEETTCTTCHHHHHHHHTTCE---EEEEESCHHHHHHHHGGG
T ss_pred             cCCCEEEecCCCCcHHHHHHHHcCCc---EEEEeCCHHHHHHHHHHH
Confidence            34567999999999999999999964   678999999888776543

>d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=85.54  E-value=0.72  Score=43.91  Aligned_cols=86  Identities=10%  Similarity=0.096  Sum_probs=58.9

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 008149          442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  521 (576)
Q Consensus       442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~D  521 (576)
                      .+.+|||+.||-||=+..+..++-+ -.++|+|+++.-.+.++.+-...+.....+...|-.      ... ....+.||
T Consensus       102 ~g~~vLD~CAaPGgKt~~la~l~~~-~~i~a~d~~~~R~~~l~~~~~r~g~~~~~~~~~~~~------~~~-~~~~~~fd  173 (284)
T d1sqga2         102 NGEHILDLCAAPGGKTTHILEVAPE-AQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRY------PSQ-WCGEQQFD  173 (284)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHHCTT-CEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTC------THH-HHTTCCEE
T ss_pred             ccceeEeccCccccchhhhhhhhhh-hhhhhhhcchhhhhhHhhhhhcccccceeeeccccc------cch-hccccccc
Confidence            3678999999999999998888765 347899999998888887665443222211111111      011 11235799


Q ss_pred             EEEecCCCCCcccc
Q 008149          522 FVICQNSVPQIPNS  535 (576)
Q Consensus       522 LVIGGpPCQ~FS~a  535 (576)
                      .|.-=+||.+....
T Consensus       174 ~IL~DaPCSg~G~~  187 (284)
T d1sqga2         174 RILLDAPCSATGVI  187 (284)
T ss_dssp             EEEEECCCCCGGGT
T ss_pred             EEEEeccccccCcc
Confidence            99999999987654

>d1cuka1 a.5.1.1 (A:156-203) DNA helicase RuvA subunit, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: DNA helicase RuvA subunit, C-terminal domain
family: DNA helicase RuvA subunit, C-terminal domain
domain: DNA helicase RuvA subunit, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=85.09  E-value=0.48  Score=34.37  Aligned_cols=36  Identities=17%  Similarity=0.324  Sum_probs=29.6

Q ss_pred             hhHHHHHHHhcCCCHHHHHHHHHHhC-CCCChhhhhH
Q 008149           88 TMEITLQLLEMGFSENQVSLAIEKFG-SKTPISELAD  123 (576)
Q Consensus        88 ~~~k~~~L~~MGFseeEas~AI~r~G-~da~i~eLvD  123 (576)
                      .+|-+..|+.+||+..||..|+.+.- ++.++++|+-
T Consensus         5 ~~eAi~AL~~LGY~~~ea~~av~~i~~~~~s~E~lIk   41 (48)
T d1cuka1           5 EQEAVARLVALGYKPQEASRMVSKIARPDASSETLIR   41 (48)
T ss_dssp             HHHHHHHHHHHTCCHHHHHHHHHHSCCSSCCHHHHHH
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHhcCCCCCHHHHHH
Confidence            35678899999999999999999864 4677887764

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.04  E-value=0.69  Score=42.47  Aligned_cols=96  Identities=18%  Similarity=0.124  Sum_probs=61.9

Q ss_pred             cccchhhhccccccCCCCCcccccCCCCChhHHHHHH-cCCceeeEEEeeCCHHHHHHHHHHhhhcCC-----CCCcccc
Q 008149          426 TDTLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHR-LGIKLKGVISIETSETNRRILKRWWESSGQ-----TGELVQI  499 (576)
Q Consensus       426 vdtv~~~lsvLK~~f~~~l~VLsLFSGiGG~slGL~~-aGi~~k~vvavEid~~a~~t~k~~~~~tn~-----~g~l~~~  499 (576)
                      ..+++..|..|......+.+||++=||.|-.+.-|.+ .|-. -.|+++|+++...+..+.+..+.+.     ....+..
T Consensus        60 P~~~a~~le~L~~~l~~g~~VLdiG~GsGy~ta~la~l~~~~-g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~  138 (224)
T d1i1na_          60 PHMHAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCT-GKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVV  138 (224)
T ss_dssp             HHHHHHHHHHTTTTSCTTCEEEEETCTTSHHHHHHHHHHCTT-CEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEE
T ss_pred             hHHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhCCC-ceEEEEcCCHHHHHHHHHhccccCcccccccceEEEE
Confidence            3466778888876667789999999999988766654 3422 2488999999887776665543221     1112344


Q ss_pred             ccccccChhhHHHhhhccCCccEEEecCCCC
Q 008149          500 EDIQALTTKKFESLIHKLGSIDFVICQNSVP  530 (576)
Q Consensus       500 ~DI~~lt~~~Ie~l~~~~g~~DLVIGGpPCQ  530 (576)
                      +|....-.+        .+.||+|+-+.-+.
T Consensus       139 gD~~~~~~~--------~~~fD~I~~~~~~~  161 (224)
T d1i1na_         139 GDGRMGYAE--------EAPYDAIHVGAAAP  161 (224)
T ss_dssp             SCGGGCCGG--------GCCEEEEEECSBBS
T ss_pred             eecccccch--------hhhhhhhhhhcchh
Confidence            565543321        25789888665444

>d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: Methyltransferase mboII
species: Moraxella bovis [TaxId: 476]

Probab=84.93  E-value=0.43  Score=42.88  Aligned_cols=42  Identities=17%  Similarity=0.217  Sum_probs=34.7

Q ss_pred             CCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHH
Q 008149          441 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKR  485 (576)
Q Consensus       441 ~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~  485 (576)
                      ..+=.|||.|+|.|...+|.+++|-+   .+++|+++...++-+.
T Consensus       211 ~~gd~VlDpF~GSGTT~~aa~~~~R~---~ig~El~~~y~~~a~~  252 (256)
T d1g60a_         211 NPNDLVLDCFMGSGTTAIVAKKLGRN---FIGCDMNAEYVNQANF  252 (256)
T ss_dssp             CTTCEEEESSCTTCHHHHHHHHTTCE---EEEEESCHHHHHHHHH
T ss_pred             CCCCEEEECCCCchHHHHHHHHcCCe---EEEEeCCHHHHHHHHH
Confidence            34567999999999999999999953   6789999887766543

>d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Hypothetical methyltransferase PH1374
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=84.82  E-value=1.2  Score=43.06  Aligned_cols=86  Identities=10%  Similarity=0.023  Sum_probs=57.1

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 008149          442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  521 (576)
Q Consensus       442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~D  521 (576)
                      .+-+|||+.||-||=+..+..+--.--.++|+|+++.-.+.++.+....+.....+...|-..+.        ...+.||
T Consensus       116 ~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~~~~i~~~~~d~~~~~--------~~~~~fD  187 (313)
T d1ixka_         116 PGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIG--------ELNVEFD  187 (313)
T ss_dssp             TTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGG--------GGCCCEE
T ss_pred             ccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHHhhccccccccccccc--------ccccccc
Confidence            36789999999999777665443222247899999988887776655443333222333333221        1236799


Q ss_pred             EEEecCCCCCcccc
Q 008149          522 FVICQNSVPQIPNS  535 (576)
Q Consensus       522 LVIGGpPCQ~FS~a  535 (576)
                      .|.-=+||.+-...
T Consensus       188 ~ILvDaPCSg~G~~  201 (313)
T d1ixka_         188 KILLDAPCTGSGTI  201 (313)
T ss_dssp             EEEEECCTTSTTTC
T ss_pred             EEEEccccccCCce
Confidence            99999999987654

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.71  E-value=0.37  Score=43.81  Aligned_cols=47  Identities=21%  Similarity=0.196  Sum_probs=39.2

Q ss_pred             CCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhh
Q 008149          441 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWES  489 (576)
Q Consensus       441 ~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~  489 (576)
                      +.+.+|||+=||.|+....+.+.+.  ..+++||+|+...+..+.+...
T Consensus        52 ~~g~~VLdIGcG~G~~a~~~a~~~~--~~v~~id~s~~~~~~a~~~~~~   98 (229)
T d1zx0a1          52 SKGGRVLEVGFGMAIAASKVQEAPI--DEHWIIECNDGVFQRLRDWAPR   98 (229)
T ss_dssp             TTCEEEEEECCTTSHHHHHHHTSCE--EEEEEEECCHHHHHHHHHHGGG
T ss_pred             cCCCeEEEeeccchHHHHHHHHcCC--CeEEEeCCCHHHHHHHHHHhhh
Confidence            4678999999999999998887763  4578999999998888877643

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

Probab=84.49  E-value=0.77  Score=43.41  Aligned_cols=80  Identities=16%  Similarity=0.121  Sum_probs=52.5

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCC-CccccccccccChhhHHHhhhccCCc
Q 008149          442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGSI  520 (576)
Q Consensus       442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g-~l~~~~DI~~lt~~~Ie~l~~~~g~~  520 (576)
                      .+.+|||+-||.|+++..|.++.-+--.|+++|+++...+.-+.+....+... ..+..+|+..-.         ....+
T Consensus       103 pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~~~~v~~~~~d~~~~~---------~~~~~  173 (266)
T d1o54a_         103 EGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGF---------DEKDV  173 (266)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGCC---------SCCSE
T ss_pred             CCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccccCcEEEeccccccc---------cccce
Confidence            48899999999999999997652221247899999998888887766543211 113344543211         12468


Q ss_pred             cEEEecCCCC
Q 008149          521 DFVICQNSVP  530 (576)
Q Consensus       521 DLVIGGpPCQ  530 (576)
                      |.|+-.-|..
T Consensus       174 D~V~~d~p~p  183 (266)
T d1o54a_         174 DALFLDVPDP  183 (266)
T ss_dssp             EEEEECCSCG
T ss_pred             eeeEecCCCH
Confidence            8888776653

>d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Type I restriction enzyme StySJI M protein
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=84.31  E-value=0.46  Score=47.45  Aligned_cols=79  Identities=14%  Similarity=0.081  Sum_probs=47.8

Q ss_pred             CCCcccccCCCCChhHHHHHHc----CCc--------eeeEEEeeCCHHHHHHHHHHhhhcCCC--CCccccccccccCh
Q 008149          442 GGLTMLSVFSGIGGAEVTLHRL----GIK--------LKGVISIETSETNRRILKRWWESSGQT--GELVQIEDIQALTT  507 (576)
Q Consensus       442 ~~l~VLsLFSGiGG~slGL~~a----Gi~--------~k~vvavEid~~a~~t~k~~~~~tn~~--g~l~~~~DI~~lt~  507 (576)
                      .+.+|+|-+||.|||-+++.+.    +..        -..+.++|+++.+.++.+.+.--+...  ...+..+|.-.-  
T Consensus       162 ~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~l~g~~~~~~~i~~~d~l~~--  239 (425)
T d2okca1         162 MGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRSPIVCEDSLEK--  239 (425)
T ss_dssp             TTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSCCSEEECCTTTS--
T ss_pred             ccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhhhcCCccccceeecCchhhh--
Confidence            3578999999999998776431    100        123789999999888776543222111  111222332111  


Q ss_pred             hhHHHhhhccCCccEEEecCCC
Q 008149          508 KKFESLIHKLGSIDFVICQNSV  529 (576)
Q Consensus       508 ~~Ie~l~~~~g~~DLVIGGpPC  529 (576)
                             .....+|+|+|=||=
T Consensus       240 -------~~~~~fD~Ii~NPPf  254 (425)
T d2okca1         240 -------EPSTLVDVILANPPF  254 (425)
T ss_dssp             -------CCSSCEEEEEECCCS
T ss_pred             -------hcccccceEEecCCC
Confidence                   123579999999995

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=84.23  E-value=1.3  Score=40.19  Aligned_cols=84  Identities=11%  Similarity=0.010  Sum_probs=53.9

Q ss_pred             CCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCC
Q 008149          440 FPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGS  519 (576)
Q Consensus       440 f~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~  519 (576)
                      .+.+.+||||=||.|+....+...-=+ ..|+++|+++...+.++..-...  .....+..|+......     ...+..
T Consensus        54 lkpg~~VLDlGcG~G~~~~~la~~v~~-g~V~gvDis~~~i~~a~~~a~~~--~ni~~i~~d~~~~~~~-----~~~~~~  125 (209)
T d1nt2a_          54 LRGDERVLYLGAASGTTVSHLADIVDE-GIIYAVEYSAKPFEKLLELVRER--NNIIPLLFDASKPWKY-----SGIVEK  125 (209)
T ss_dssp             CCSSCEEEEETCTTSHHHHHHHHHTTT-SEEEEECCCHHHHHHHHHHHHHC--SSEEEECSCTTCGGGT-----TTTCCC
T ss_pred             CCCCCEEEEeCCcCCHHHHHHHHhccC-CeEEEEeCCHHHHHHHHHHhhcc--CCceEEEeeccCcccc-----ccccce
Confidence            345899999999999999888765212 35899999999888776654332  1222345666543321     112356


Q ss_pred             ccEEEecCCCCC
Q 008149          520 IDFVICQNSVPQ  531 (576)
Q Consensus       520 ~DLVIGGpPCQ~  531 (576)
                      +|+|..-.++..
T Consensus       126 vd~v~~~~~~~~  137 (209)
T d1nt2a_         126 VDLIYQDIAQKN  137 (209)
T ss_dssp             EEEEEECCCSTT
T ss_pred             EEEEEecccChh
Confidence            788776655544

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=83.90  E-value=1  Score=41.57  Aligned_cols=87  Identities=16%  Similarity=0.092  Sum_probs=56.5

Q ss_pred             cchhhhccccccCCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccCh
Q 008149          428 TLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTT  507 (576)
Q Consensus       428 tv~~~lsvLK~~f~~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~  507 (576)
                      ..+..|..|.  ...+.+||++=||.|-++.-|.+++-   -|+++|+++.....-+..+...  ....+..+|....-.
T Consensus        58 ~~a~ml~~L~--l~~g~~VLdIG~GsGy~ta~La~l~~---~V~aiE~~~~~~~~A~~~~~~~--~nv~~~~~d~~~g~~  130 (224)
T d1vbfa_          58 LGIFMLDELD--LHKGQKVLEIGTGIGYYTALIAEIVD---KVVSVEINEKMYNYASKLLSYY--NNIKLILGDGTLGYE  130 (224)
T ss_dssp             HHHHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHSS---EEEEEESCHHHHHHHHHHHTTC--SSEEEEESCGGGCCG
T ss_pred             hHHHHHHHhh--hcccceEEEecCCCCHHHHHHHHHhc---ccccccccHHHHHHHHHHHhcc--cccccccCchhhcch
Confidence            3344455553  34578999999999999988888874   3789999999988877765432  122244556544222


Q ss_pred             hhHHHhhhccCCccEEEecCCC
Q 008149          508 KKFESLIHKLGSIDFVICQNSV  529 (576)
Q Consensus       508 ~~Ie~l~~~~g~~DLVIGGpPC  529 (576)
                              ..++||.|+-+..+
T Consensus       131 --------~~~pfD~Iiv~~a~  144 (224)
T d1vbfa_         131 --------EEKPYDRVVVWATA  144 (224)
T ss_dssp             --------GGCCEEEEEESSBB
T ss_pred             --------hhhhHHHHHhhcch
Confidence                    12567776654433

>d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: M.EcoKI
species: Escherichia coli [TaxId: 562]

Probab=83.56  E-value=3.5  Score=41.96  Aligned_cols=108  Identities=15%  Similarity=0.086  Sum_probs=56.7

Q ss_pred             Hhhhhhccccchhh-hccccccCCCCCcccccCCCCChhHHHHHH-c---CC-------------ceeeEEEeeCCHHHH
Q 008149          419 SLRHCFQTDTLGYH-LSVLKSMFPGGLTMLSVFSGIGGAEVTLHR-L---GI-------------KLKGVISIETSETNR  480 (576)
Q Consensus       419 ~Lg~sf~vdtv~~~-lsvLK~~f~~~l~VLsLFSGiGG~slGL~~-a---Gi-------------~~k~vvavEid~~a~  480 (576)
                      ..|--|+...|... ...+.+ . .+.+|+|-+||.|||-++..+ +   +-             ....++++|+++.+.
T Consensus       142 ~~GqfyTP~~Iv~~mv~ll~~-~-~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~  219 (524)
T d2ar0a1         142 GAGQYFTPRPLIKTIIHLLKP-Q-PREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTR  219 (524)
T ss_dssp             ---CCCCCHHHHHHHHHHHCC-C-TTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHH
T ss_pred             ccchhccccchhHhhhhcccC-c-cchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHH
Confidence            34555544433333 333433 2 357899999999999876532 1   00             012478999999988


Q ss_pred             HHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCccEEEecCCCC
Q 008149          481 RILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDFVICQNSVP  530 (576)
Q Consensus       481 ~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~DLVIGGpPCQ  530 (576)
                      ++.+.+.--+..... +..+|...... .+..-......||+|+|=||=.
T Consensus       220 ~la~~nl~l~~~~~~-i~~~~~~~~~~-~l~~d~~~~~kfD~Ii~NPPfg  267 (524)
T d2ar0a1         220 RLALMNCLLHDIEGN-LDHGGAIRLGN-TLGSDGENLPKAHIVATNPPFG  267 (524)
T ss_dssp             HHHHHHHHTTTCCCB-GGGTBSEEESC-TTSHHHHTSCCEEEEEECCCCT
T ss_pred             HHHHHHHHhhccccc-ccccchhhhhh-hhhhcccccccceeEEecCCcc
Confidence            877655432222222 22222211111 1101111235799999999964

>d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.RsrI N6 adenosine-specific DNA methyltransferase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=82.74  E-value=0.44  Score=43.37  Aligned_cols=44  Identities=18%  Similarity=0.253  Sum_probs=36.7

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhh
Q 008149          442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWE  488 (576)
Q Consensus       442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~  488 (576)
                      .+=.|||.|+|.|..-+|.+++|-+   .+++|+++....+.+....
T Consensus       207 ~gdiVLDpF~GSGTT~~Aa~~lgR~---~ig~El~~~y~~~a~~Ri~  250 (279)
T d1eg2a_         207 PGSTVLDFFAGSGVTARVAIQEGRN---SICTDAAPVFKEYYQKQLT  250 (279)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHHTCE---EEEEESSTHHHHHHHHHHH
T ss_pred             CCCEEEecCCCCcHHHHHHHHhCCe---EEEEeCCHHHHHHHHHHHH
Confidence            3556999999999999999999964   6789999998887765443

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.58  E-value=1.4  Score=40.38  Aligned_cols=94  Identities=15%  Similarity=0.149  Sum_probs=53.5

Q ss_pred             cchhhhccccccCCCCCcccccCCCCChhHHHHHHc------CCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCcccccc
Q 008149          428 TLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRL------GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIED  501 (576)
Q Consensus       428 tv~~~lsvLK~~f~~~l~VLsLFSGiGG~slGL~~a------Gi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~D  501 (576)
                      .+...+..|.+. +..++|||+=||.|.++..+-..      +..+ .+.+||+++.....++....+.....  ...-+
T Consensus        27 ~l~~~l~~l~~~-~~~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~-~~~~vD~s~~~l~~a~~~~~~~~~~~--~~~~~  102 (280)
T d1jqea_          27 KLPGIIGRIGDT-KSEIKILSIGGGAGEIDLQILSKVQAQYPGVCI-NNEVVEPSAEQIAKYKELVAKISNLE--NVKFA  102 (280)
T ss_dssp             THHHHTTTTTTT-CSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEE-EEEEECCCHHHHHHHHHHHTTCCSCT--TEEEE
T ss_pred             HHHHHHHHhccC-CCCCeEEEEcCCCCHHHHHHHHHhhhhccCCce-EEEEEeCcHHHHHHHHHHHhhccccc--ccccc
Confidence            334445555442 34678999999999998766432      3332 36789999998888877654321111  11234


Q ss_pred             ccccChhhHHHhhh---ccCCccEEEe
Q 008149          502 IQALTTKKFESLIH---KLGSIDFVIC  525 (576)
Q Consensus       502 I~~lt~~~Ie~l~~---~~g~~DLVIG  525 (576)
                      +...+.+.+.....   ..+.||+|+.
T Consensus       103 ~~~~~~~~~~~~~~~~~~~~~fD~I~~  129 (280)
T d1jqea_         103 WHKETSSEYQSRMLEKKELQKWDFIHM  129 (280)
T ss_dssp             EECSCHHHHHHHHTTSSSCCCEEEEEE
T ss_pred             chhhhhhhhcchhcccCCCCceeEEEE
Confidence            44555444322111   1246777765

>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=82.47  E-value=1.5  Score=39.68  Aligned_cols=83  Identities=19%  Similarity=0.056  Sum_probs=56.1

Q ss_pred             CcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCccEE
Q 008149          444 LTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDFV  523 (576)
Q Consensus       444 l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~DLV  523 (576)
                      ..|||+=||.|.+.+.+.+..=+ ..++++|+++.............+-....+..+|+.++.. .+     ..+.+|.|
T Consensus        33 plvLdIGcG~G~~~~~lA~~~p~-~~~iGid~~~~~v~~a~~~~~~~~l~Ni~~~~~da~~l~~-~~-----~~~~~~~i  105 (204)
T d1yzha1          33 PIHVEVGSGKGAFVSGMAKQNPD-INYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTD-YF-----EDGEIDRL  105 (204)
T ss_dssp             CEEEEESCTTSHHHHHHHHHCTT-SEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGG-TS-----CTTCCSEE
T ss_pred             CeEEEEeccCCHHHHHHHHHCCC-CceEEEeccHHHHHHHHHhhhhhccccceeeecCHHHHhh-hc-----cCCceehh
Confidence            45999999999999998887533 3578999998755544444444333334456788877642 22     12578999


Q ss_pred             EecCCCCCcc
Q 008149          524 ICQNSVPQIP  533 (576)
Q Consensus       524 IGGpPCQ~FS  533 (576)
                      .--+|..-+-
T Consensus       106 ~i~fPdPw~K  115 (204)
T d1yzha1         106 YLNFSDPWPK  115 (204)
T ss_dssp             EEESCCCCCS
T ss_pred             cccccccccc
Confidence            8888876544

>d1z96a1 a.5.2.1 (A:295-332) UBA-domain protein mud1 {Schizosaccharomyces pombe [TaxId: 4896]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: UBA-domain protein mud1
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=82.08  E-value=0.8  Score=30.89  Aligned_cols=33  Identities=30%  Similarity=0.329  Sum_probs=24.5

Q ss_pred             hhHHHhcCCCChHHHHHHHHHhCCCCcHHHHHHHH
Q 008149           19 KRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFI   53 (576)
Q Consensus        19 ~r~~li~MGFs~e~V~kAIqe~Ge~~~~~~Ile~L   53 (576)
                      +.++|++|||.+-+...|++-- ..+ .+--..+|
T Consensus         5 kiaqlvsmgfdpleaaqaldaa-ngd-ldvaasfl   37 (38)
T d1z96a1           5 KIAQLVSMGFDPLEAAQALDAA-NGD-LDVAASFL   37 (38)
T ss_dssp             HHHHHHHTTCCHHHHHHHHHHT-TTC-HHHHHHHH
T ss_pred             HHHHHHHcCCCHHHHHHHHhhh-cCc-HHHHHHhh
Confidence            6789999999999999999873 223 44444444

>d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Bacillus subtilis, Ermc' [TaxId: 1423]

Probab=81.64  E-value=0.97  Score=42.00  Aligned_cols=75  Identities=15%  Similarity=0.005  Sum_probs=55.1

Q ss_pred             CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 008149          442 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  521 (576)
Q Consensus       442 ~~l~VLsLFSGiGG~slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt~~~Ie~l~~~~g~~D  521 (576)
                      .+-+||++=+|.|-++..|-..|-   .|.+||+|+.....++..+..  ++...++.+|+-+++-..        ....
T Consensus        21 ~~d~VlEIGpG~G~LT~~Ll~~~~---~v~avE~D~~l~~~l~~~~~~--~~n~~i~~~D~l~~~~~~--------~~~~   87 (235)
T d1qama_          21 EHDNIFEIGSGKGHFTLELVQRCN---FVTAIEIDHKLCKTTENKLVD--HDNFQVLNKDILQFKFPK--------NQSY   87 (235)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHSS---EEEEECSCHHHHHHHHHHTTT--CCSEEEECCCGGGCCCCS--------SCCC
T ss_pred             CCCeEEEECCCchHHHHHHHhCcC---ceEEEeeccchHHHHHHHhhc--ccchhhhhhhhhhccccc--------cccc
Confidence            567799999999999999998884   378999999999998876532  233346789998775311        2334


Q ss_pred             EEEecCCC
Q 008149          522 FVICQNSV  529 (576)
Q Consensus       522 LVIGGpPC  529 (576)
                      .|+|--|=
T Consensus        88 ~vv~NLPY   95 (235)
T d1qama_          88 KIFGNIPY   95 (235)
T ss_dssp             EEEEECCG
T ss_pred             eeeeeehh
Confidence            56777664

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=80.71  E-value=1.8  Score=39.71  Aligned_cols=91  Identities=20%  Similarity=0.232  Sum_probs=63.0

Q ss_pred             cchhhhccccccCCCCCcccccCCCCChhHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccC
Q 008149          428 TLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALT  506 (576)
Q Consensus       428 tv~~~lsvLK~~f~~~l~VLsLFSGiGG~slGL~~a-Gi~~k~vvavEid~~a~~t~k~~~~~tn~~g~l~~~~DI~~lt  506 (576)
                      +++..|..|.  ...+.+||++=||+|-.+.-+.++ |-   .|+++|+++.-...-+.++...+.....+..+|+.+.-
T Consensus        66 ~~a~ml~~L~--l~~g~~VLeIGsGsGY~taila~l~g~---~V~~ie~~~~l~~~a~~~l~~~g~~nv~~~~gd~~~g~  140 (215)
T d1jg1a_          66 MVAIMLEIAN--LKPGMNILEVGTGSGWNAALISEIVKT---DVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKGF  140 (215)
T ss_dssp             HHHHHHHHHT--CCTTCCEEEECCTTSHHHHHHHHHHCS---CEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCC
T ss_pred             hHHHHHHhhc--cCccceEEEecCCCChhHHHHHHhhCc---eeEEEeccHHHHHHHHHHHHHcCCceeEEEECccccCC
Confidence            4566666664  345789999999999998877754 62   27899999887777777666554444446678876543


Q ss_pred             hhhHHHhhhccCCccEEEecCCCCC
Q 008149          507 TKKFESLIHKLGSIDFVICQNSVPQ  531 (576)
Q Consensus       507 ~~~Ie~l~~~~g~~DLVIGGpPCQ~  531 (576)
                      .        ..+.||.|+-+..+..
T Consensus       141 ~--------~~~pfD~Iiv~~a~~~  157 (215)
T d1jg1a_         141 P--------PKAPYDVIIVTAGAPK  157 (215)
T ss_dssp             G--------GGCCEEEEEECSBBSS
T ss_pred             c--------ccCcceeEEeeccccc
Confidence            2        2368999987655543