Citrus Sinensis ID: 008150

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570------
MKYSFATCGNDKASMGRSLDKENPTRCSVSGGKPNRCIIFPANVSMVAEALERRNKDWIVRAKVASDLIVQIADSCFHLHKLAMVSKSEYLNRIVFKRRSNGEKENNPMIFISNFPGGIEIFELVVKFCYGWKVDVTATNIAALYSAANFLEMSDDLDQGNLITKTEAFLSFSILSSWKDTFQILKSCESIQSWAKELHILKRCSEAIALKASINKKGFTFHDGDAQGALANNVEDWEKEGRADSWWFEDVSSLRIDHFIEVINSIKRKGITSELVGSCIAKWTSKWLSQITSGLNNVTPKQLTHQLRRVTTESLIRILPEEENAVSCNFLLHLLKLGLMMKINAELLKKLERRIAFMLEHCRVSDLLVRNYGENDTVYHVGIVVRVVECYVSFVLRNPAPRIFVVGRLVDGYLTLIARDKNLAAKRFQLLAEALPKSARVCDDNLYRAMDIYLKAHPDLTEEERTSVSRAMEFHKLSQEARQHMMKNERLPLKMRARYILLEQVNITKVMTAGGSNFCRTKGQAIIRVSKGLEKGRMSSHKEIKVMKKEVETMKMQLNQLQMCKTQLQNQVKSWR
cccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccHHHHcccccccEEEEEccEEEEEcHHHHHHccHHHHHHHcccccccccccccEEEcccccccHHHHHHHHHHHHccccccccccHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccHHHHHHccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHccccccccccccEEccccccccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHcccccccccHHHHHHHHHHHHHcccccHHHHcccccccccccccHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
ccccccccccccEEEccccccccccccEEEccccccEEEEcccccccccHHccccccEEEEccccccEEEEEccEEEEEcccccccccHHHHHHEEccccccccccccEEEEccccccHHHHHHHHHHHccEEEEEcHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccHHHHHHHccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcHHHcccccccccccEccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHcccHcccccccHHHHHHHHHHHcccccHHHHHHHHHHHcHHHccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
mkysfatcgndkasmgrsldkenptrcsvsggkpnrciifpANVSMVAEALERRNKDWIVRAKVASDLIVQIADSCFHLHKLAMVSKSEYLNRIVFKrrsngekennpmifisnfpggiEIFELVVKFCYGWKVDVTATNIAALYSAANFlemsddldqgnlitkTEAFLSFSILSSWKDTFQILKSCESIQSWAKELHILKRCSEAIALKASInkkgftfhdgdaqgaLANNVEdwekegradswwfedvssLRIDHFIEVINSIKRKGITSELVGSCIAKWTSKWLSQITsglnnvtpkqLTHQLRRVTTESLIRILPEEENAVSCNFLLHLLKLGLMMKINAELLKKLERRIAFMLEHCRVSDLLvrnygendtvYHVGIVVRVVECYVSFvlrnpaprifVVGRLVDGYLTLIARDKNLAAKRFQLLAEALpksarvcdDNLYRAMDIYlkahpdlteeeRTSVSRAMEFHKLSQEARQHMMKNERLPLKMRARYILLEQVNITKVmtaggsnfcrtKGQAIIRVSKGlekgrmssHKEIKVMKKEVETMKMQLNQLQMCKTQLQNQVKSWR
mkysfatcgndkasmgrsldkenptrcsvsggkpnrciiFPANVSMVAEALERRNKDWIVRAKVASDLIVQIADSCFHLHKLamvskseylnRIVFKrrsngekennpMIFISNFPGGIEIFELVVKFCYGWKVDVTATNIAALYSAANFLEMSDDLDQGNLITKTEAFLSFSILSSWKDTFQILKSCESIQSWAKELHILKRCSEAIALKASINKKGFTFHDGDAQGALANNVEDWEKEGRADSWWFEDVSSLRIDHFIEVINSikrkgitsELVGSCIAKWTSKWLSQITSglnnvtpkqlthqLRRVTTESLIRILPEEENAVSCNFLLHLLKLGLMMKINAELLKKLERRIAFMLEHCRVSDLLVRNYGENDTVYHVGIVVRVVECYVSFVlrnpaprifvvGRLVDGYLTLIARDKNLAAKRFQLLaealpksarvCDDNLYRAMDIYLKAHPDLTEEERTSVSRAMEFHKLSQEARQHMMKNERLPLKMRARYILLEQVNITKVMtaggsnfcrtkgQAIIRVskglekgrmsshkEIKVMKKEVETMKMQLNQlqmcktqlqnqvkswr
MKYSFATCGNDKASMGRSLDKENPTRCSVSGGKPNRCIIFPANVSMVAEALERRNKDWIVRAKVASDLIVQIADSCFHLHKLAMVSKSEYLNRIVFKRRSNGEKENNPMIFISNFPGGIEIFELVVKFCYGWKVDVTATNIAALYSAANFLEMSDDLDQGNLITKTEAFLSFSILSSWKDTFQILKSCESIQSWAKELHILKRCSEAIALKASINKKGFTFHDGDAQGALANNVEDWEKEGRADSWWFEDVSSLRIDHFIEVINSIKRKGITSELVGSCIAKWTSKWLSQITSGLNNVTPKQLTHQLRRVTTESLIRILPEEENAVSCNFllhllklglmmkINAELLKKLERRIAFMLEHCRVSDLLVRNYGENDTVYHVGIVVRVVECYVSFVLRNPAPRIFVVGRLVDGYLTLIARDKNLAAKRFQLLAEALPKSARVCDDNLYRAMDIYLKAHPDLTEEERTSVSRAMEFHKLSQEARQHMMKNERLPLKMRARYILLEQVNITKVMTAGGSNFCRTKGQAIIRVSKGLEKGRMSSHkeikvmkkevetmkmQLNQLQMCKTQLQNQVKSWR
**********************************NRCIIFPANVSMVAEALERRNKDWIVRAKVASDLIVQIADSCFHLHKLAMVSKSEYLNRIVFKRR*******NPMIFISNFPGGIEIFELVVKFCYGWKVDVTATNIAALYSAANFLEMSDDLDQGNLITKTEAFLSFSILSSWKDTFQILKSCESIQSWAKELHILKRCSEAIALKASINKKGFTFHDGDAQGALANNVEDWEKEGRADSWWFEDVSSLRIDHFIEVINSIKRKGITSELVGSCIAKWTSKWLSQITSGLNNVTPKQLTHQLRRVTTESLIRILPEEENAVSCNFLLHLLKLGLMMKINAELLKKLERRIAFMLEHCRVSDLLVRNYGENDTVYHVGIVVRVVECYVSFVLRNPAPRIFVVGRLVDGYLTLIARDKNLAAKRFQLLAEALPKSARVCDDNLYRAMDIYLKAH***********************************LKMRARYILLEQVNITKVMTAGGSNFCRTKGQAIIRVS**********************************************
*************SMGR*******************************************RAKVASDLIVQIADSCFHLHKLAMVSKSEYLNRIVF**********NPMIFISNFPGGIEIFELVVKFCYGWKVDVTATNIAALYSAANFLEMSDDLDQGNLITKTEAFLSFSILSSWKDTFQILKSCESIQSWAKELHILKRCSEAIALKASINKKG**************************SWWFEDVSSLRIDHFIEVINSIKRKGITSELVGSCIAKWTSKWLSQITS************QLRRVTTESLIRILPEEENAVSCNFLLHLLKLGLMMKINAELLKKLERRIAFMLEHCRVSDLLVRNYGENDTVYHVGIVVRVVECY*************VVGRLVDGYLTLIARDKNLAAKRFQLLAEALPKSARVCDDNLYRAMDIYLKAHPDLTEEERTSVSRAMEFHKLSQEARQHMMKNERLPLKMRARYILLEQV****************************************************************N******
********GNDKAS****************GGKPNRCIIFPANVSMVAEALERRNKDWIVRAKVASDLIVQIADSCFHLHKLAMVSKSEYLNRIVFKRRSNGEKENNPMIFISNFPGGIEIFELVVKFCYGWKVDVTATNIAALYSAANFLEMSDDLDQGNLITKTEAFLSFSILSSWKDTFQILKSCESIQSWAKELHILKRCSEAIALKASINKKGFTFHDGDAQGALANNVEDWEKEGRADSWWFEDVSSLRIDHFIEVINSIKRKGITSELVGSCIAKWTSKWLSQITSGLNNVTPKQLTHQLRRVTTESLIRILPEEENAVSCNFLLHLLKLGLMMKINAELLKKLERRIAFMLEHCRVSDLLVRNYGENDTVYHVGIVVRVVECYVSFVLRNPAPRIFVVGRLVDGYLTLIARDKNLAAKRFQLLAEALPKSARVCDDNLYRAMDIYLKAHPDLTEEERTSVSRAMEFHKLSQEARQHMMKNERLPLKMRARYILLEQVNITKVMTAGGSNFCRTKGQAIIRVSKGLEKGRMSSHKEIKVMKKEVETMKMQLNQLQMCK***********
***SFATCGNDKASMGRSLDKENPTRCSVSGGKPNRCIIFPANVSMVAEALERRNKDWIVRAKVASDLIVQIADSCFHLHKLAMVSKSEYLNRIVFKRRSNGEKENNPMIFISNFPGGIEIFELVVKFCYGWKVDVTATNIAALYSAANFLEMSDDLDQGNLITKTEAFLSFSILSSWKDTFQILKSCESIQSWAKELHILKRCSEAIALKASINKKGFTFHDGDAQGA**********EGRADSWWFEDVSSLRIDHFIEVINSIKRKGITSELVGSCIAKWTSKWLSQIT***********THQLRRVTTESLIRILPEEENAVSCNFLLHLLKLGLMMKINAELLKKLERRIAFMLEHCRVSDLLVRNYGENDTVYHVGIVVRVVECYVSFVLRNPAPRIFVVGRLVDGYLTLIARDKNLAAKRFQLLAEALPKSARVCDDNLYRAMDIYLKAHPDLTEEERTSVSRAMEFHKLSQEARQHMMKNERLPLKMRARYILLEQVNITKVMT*****************************KEIKVMKKEVETMKMQLNQLQMCKTQLQNQV*S**
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MKYSFATCGNDKASMGRSLDKENPTRCSVSGGKPNRCIIFPANVSMVAEALERRNKDWIVRAKVASDLIVQIADSCFHLHKLAMVSKSEYLNRIVFKRRSNGEKENNPMIFISNFPGGIEIFELVVKFCYGWKVDVTATNIAALYSAANFLEMSDDLDQGNLITKTEAFLSFSILSSWKDTFQILKSCESIQSWAKELHILKRCSEAIALKASINKKGFTFHDGDAQGALANNVEDWEKEGRADSWWFEDVSSLRIDHFIEVINSIKRKGITSELVGSCIAKWTSKWLSQITSGLNNVTPKQLTHQLRRVTTESLIRILPEEENAVSCNFLLHLLKLGLMMKINAELLKKLERRIAFMLEHCRVSDLLVRNYGENDTVYHVGIVVRVVECYVSFVLRNPAPRIFVVGRLVDGYLTLIARDKNLAAKRFQLLAEALPKSARVCDDNLYRAMDIYLKAHPDLTEEERTSVSRAMEFHKLSQEARQHMMKNERLPLKMRARYILLEQVNITKVMTAGGSNFCRTKGQAIIRVSKGLEKGRMSSHKEIKVMKKExxxxxxxxxxxxxxxxxxxxxVKSWR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query576 2.2.26 [Sep-21-2011]
Q9LFU0607 Putative BTB/POZ domain-c yes no 0.885 0.840 0.320 1e-84
Q5KS50762 Coleoptile phototropism p yes no 0.894 0.675 0.310 8e-81
Q9LYW0592 BTB/POZ domain-containing no no 0.899 0.875 0.308 1e-77
Q9S9Q9665 BTB/POZ domain-containing no no 0.883 0.765 0.299 2e-73
Q9FN09579 BTB/POZ domain-containing no no 0.763 0.759 0.337 7e-69
Q9FKB6614 BTB/POZ domain-containing no no 0.855 0.802 0.307 1e-68
Q9FYC8651 BTB/POZ domain-containing no no 0.897 0.794 0.277 1e-68
Q9FNB3591 Putative BTB/POZ domain-c no no 0.788 0.768 0.309 5e-67
Q94A73668 BTB/POZ domain-containing no no 0.798 0.688 0.303 7e-67
Q9C9Z0582 Putative BTB/POZ domain-c no no 0.824 0.816 0.295 7e-66
>sp|Q9LFU0|DOT3_ARATH Putative BTB/POZ domain-containing protein DOT3 OS=Arabidopsis thaliana GN=DOT3 PE=3 SV=1 Back     alignment and function desciption
 Score =  314 bits (805), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 182/567 (32%), Positives = 304/567 (53%), Gaps = 57/567 (10%)

Query: 30  SGGKPNRCIIFPANVSMVAEALERRNKDWIVRAKVASDLIVQIADSCFHLHKLAMVSKSE 89
           +G   N+ IIFP+ V  +A + E++++ W V++++ +DL +Q+ D  F  HK  ++SK  
Sbjct: 16  AGPVCNKSIIFPSRVVTLANSFEKKDRSWYVKSQIPTDLSIQVNDITFKAHKFPLISKCG 75

Query: 90  YLNRIVFKRRSNGEKENNPMIFISNFPGGIEIFELVVKFCYGWKVDVTATNIAALYSAAN 149
           Y++ I  K  ++   EN   + + NFPGG + FE ++KFCY   +D+   N+A L  A+ 
Sbjct: 76  YISSIELKPSTS---ENGYHLKLENFPGGADTFETILKFCYNLPLDLNPLNVAPLRCASE 132

Query: 150 FLEMSDDLDQGNLITKTEAFLSFSILSSWKDTFQILKSCESIQSWAKELHILKRCSEAIA 209
           +L M+++ + GNLI+KTEAF++F +L+SW+DT  +L+SC ++  WA+ L I++RC + +A
Sbjct: 133 YLYMTEEFEAGNLISKTEAFITFVVLASWRDTLTVLRSCTNLSPWAENLQIVRRCCDLLA 192

Query: 210 LKASINKKGFTFHDGDAQGALANNVEDWEKEGRADSWWFEDVSSLRIDHFIEVINSIKRK 269
            KA  +                NN+ + +   R +   + D+++L IDHF+ VI ++K +
Sbjct: 193 WKACND----------------NNIPE-DVVDRNERCLYNDIATLDIDHFMRVITTMKAR 235

Query: 270 GITSELVGSCIAKWTSKWLSQITSGLNNVT--------------------PKQLTHQLRR 309
               ++ G  I K+   +L  I   L  +                        L  Q  +
Sbjct: 236 RAKPQITGKIIMKYADNFLPVINDDLEGIKGYGLGKNELQFSVNRGRMEESNSLGCQEHK 295

Query: 310 VTTESLIRILPEEENAVSCNFLLHLLKLGLMMKINAELLKKLERRIAFMLEHCRVSDLLV 369
            T ESL+ +LP +  AVSC+FLL +LK  ++   +  L+  LE+R+   LE   V DLL+
Sbjct: 296 ETIESLVSVLPPQSGAVSCHFLLRMLKTSIVYSASPALISDLEKRVGMALEDANVCDLLI 355

Query: 370 RNYGENDTVYHVGIVVRVVECYVSFVLRNPAPRIFVVGRLVDGYLTLIARDKNLAAKRFQ 429
            N+   +    V I    +      VL  P+     + +L+D YL  IA+D  L   +FQ
Sbjct: 356 PNFKNEEQQERVRIFEFFLMHEQQQVLGKPS-----ISKLLDNYLAEIAKDPYLPITKFQ 410

Query: 430 LLAEALPKSARVCDDNLYRAMDIYLKAHPDLTEEERTSVSRAMEFHKLSQEARQHMMKNE 489
           +LAE LP++A  C D LYRA+D++LK HP L++ +R  + + M   KLS +A  H  +N+
Sbjct: 411 VLAEMLPENAWKCHDGLYRAIDMFLKTHPSLSDHDRRRLCKTMNCEKLSLDACLHAAQND 470

Query: 490 RLPLK----MRARYILLEQVNITKVMTAGGSNFCRTKGQAIIRVSKGLEKGRMSSHKE-I 544
           RLPL+    +  + +  EQV +  +M            +     S G E  RMS   E I
Sbjct: 471 RLPLRTIVQINTQVLFSEQVKMRMMMQD-------KLPEKEEENSGGREDKRMSRDNEII 523

Query: 545 KVMKKEVETMKMQLNQLQMCKTQLQNQ 571
           K +K+E+E +K ++++LQ    +LQ +
Sbjct: 524 KTLKEELENVKKKMSELQSDYNELQQE 550
May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins.
Arabidopsis thaliana (taxid: 3702)
>sp|Q5KS50|NPH3_ORYSJ Coleoptile phototropism protein 1 OS=Oryza sativa subsp. japonica GN=CPT1 PE=2 SV=1 Back     alignment and function description
>sp|Q9LYW0|Y5325_ARATH BTB/POZ domain-containing protein At5g03250 OS=Arabidopsis thaliana GN=At5g03250 PE=2 SV=1 Back     alignment and function description
>sp|Q9S9Q9|Y1044_ARATH BTB/POZ domain-containing protein At1g30440 OS=Arabidopsis thaliana GN=At1g30440 PE=1 SV=2 Back     alignment and function description
>sp|Q9FN09|NPY3_ARATH BTB/POZ domain-containing protein NPY3 OS=Arabidopsis thaliana GN=NPY3 PE=2 SV=1 Back     alignment and function description
>sp|Q9FKB6|Y5880_ARATH BTB/POZ domain-containing protein At5g48800 OS=Arabidopsis thaliana GN=At5g48800 PE=1 SV=1 Back     alignment and function description
>sp|Q9FYC8|Y3482_ARATH BTB/POZ domain-containing protein At3g44820 OS=Arabidopsis thaliana GN=At3g44820 PE=2 SV=2 Back     alignment and function description
>sp|Q9FNB3|Y5360_ARATH Putative BTB/POZ domain-containing protein At5g13600 OS=Arabidopsis thaliana GN=At5g13600 PE=3 SV=1 Back     alignment and function description
>sp|Q94A73|Y5656_ARATH BTB/POZ domain-containing protein At5g66560 OS=Arabidopsis thaliana GN=At5g66560 PE=2 SV=2 Back     alignment and function description
>sp|Q9C9Z0|Y3866_ARATH Putative BTB/POZ domain-containing protein At3g08660 OS=Arabidopsis thaliana GN=At3g08660 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query576
224125298566 predicted protein [Populus trichocarpa] 0.939 0.955 0.635 0.0
356574935565 PREDICTED: root phototropism protein 3-l 0.970 0.989 0.561 0.0
357441619548 BTB/POZ domain-containing protein [Medic 0.937 0.985 0.564 0.0
449436004594 PREDICTED: root phototropism protein 3-l 0.953 0.924 0.548 1e-171
255542596440 protein binding protein, putative [Ricin 0.567 0.743 0.648 1e-116
147838167665 hypothetical protein VITISV_002200 [Viti 0.907 0.786 0.386 1e-110
224141185672 predicted protein [Populus trichocarpa] 0.934 0.800 0.380 1e-109
225464091674 PREDICTED: root phototropism protein 3 [ 0.907 0.775 0.381 1e-109
356554757672 PREDICTED: root phototropism protein 3-l 0.937 0.803 0.373 1e-108
449438761675 PREDICTED: root phototropism protein 3-l 0.913 0.779 0.376 1e-108
>gi|224125298|ref|XP_002319551.1| predicted protein [Populus trichocarpa] gi|222857927|gb|EEE95474.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  707 bits (1825), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 351/552 (63%), Positives = 437/552 (79%), Gaps = 11/552 (1%)

Query: 15  MG-RSLDKENPTRCSVSGGKPNRCIIFPANVSMVAEALERRNKDWIVRAKVASDLIVQIA 73
           MG RSLD     + +VSG K N+CII PAN +MVAEALE+RN++W+VRA+VA+DLI+Q+ 
Sbjct: 1   MGSRSLDS---GKATVSGRKHNKCIILPANENMVAEALEKRNQNWMVRARVANDLIIQVG 57

Query: 74  DSCFHLHKLAMVSKSEYLNRIVFKRRSNGEKENNPMIFISNFPGGIEIFELVVKFCYGWK 133
           DS F LHKLAMVSKSEYLNR+VF+RRSNG K+  P I I NFPGG EIFELVVKFCYG K
Sbjct: 58  DSSFQLHKLAMVSKSEYLNRLVFQRRSNGAKDTLPKIQIDNFPGGSEIFELVVKFCYGCK 117

Query: 134 VDVTATNIAALYSAANFLEMSDDLDQGNLITKTEAFLSFSILSSWKDTFQILKSCESIQS 193
           VD+TA+NIA ++ AA+FLEMSDDL+QGNLI+KTEAFLSF + S+WKD F+ILKSCESI  
Sbjct: 118 VDLTASNIAPVHCAAHFLEMSDDLEQGNLISKTEAFLSFVLFSAWKDIFRILKSCESISL 177

Query: 194 WAKELHILKRCSEAIALKASINKKGFTFHDGDA--QGALANNVEDWEKEGRADSWWFEDV 251
           WA +L IL+RCS+AIA KA I+ K FT  + DA     L N+ E+ + +G A++WWFEDV
Sbjct: 178 WAMKLQILQRCSDAIAWKACIDPKLFTLSEDDAISLNVLENDAENLKHKGIAENWWFEDV 237

Query: 252 SSLRIDHFIEVINSIKRKGITSELVGSCIAKWTSKWLSQITSGLNNVTPKQLTHQLRRVT 311
           S LRIDHF+EVI SIKRKG+ SELVGSC+A WT+KW+S    G +N+ PK LTH L RVT
Sbjct: 238 SCLRIDHFVEVIKSIKRKGVRSELVGSCVAYWTAKWIS----GPDNL-PKHLTHHLLRVT 292

Query: 312 TESLIRILPEEENAVSCNFLLHLLKLGLMMKINAELLKKLERRIAFMLEHCRVSDLLVRN 371
           TESL+RILP EEN+VS NFLLHLLKLG+MM+I++ELL ++E+RIA  LE+CRVSDLLV N
Sbjct: 293 TESLVRILPGEENSVSANFLLHLLKLGIMMRISSELLNEVEKRIALKLENCRVSDLLVMN 352

Query: 372 YGENDTVYHVGIVVRVVECYVSFVLRNPAPRIFVVGRLVDGYLTLIARDKNLAAKRFQLL 431
           YG +DTVY VG V  VVE Y S +L NP P++ VVG+LVDGYL  ++ D  L+ ++F+ L
Sbjct: 353 YGNDDTVYDVGTVSMVVEAYASSMLNNPTPKLLVVGKLVDGYLAQVSWDDKLSVEQFRSL 412

Query: 432 AEALPKSARVCDDNLYRAMDIYLKAHPDLTEEERTSVSRAMEFHKLSQEARQHMMKNERL 491
           AEALP  AR C DNLY A+D YLKAHP LTEEER SV  AM++HKLSQE  +H  +N+RL
Sbjct: 413 AEALPNDARYCHDNLYTAIDTYLKAHPRLTEEERISVCTAMDYHKLSQEGLKHATRNDRL 472

Query: 492 PLKMRARYILLEQVNITKVMTAGGSNFCRTKGQAIIRVSKGLEKGRMSSHKEIKVMKKEV 551
           P+ +  R ILLEQVN+ + +T+ GSN+ RTK QAIIRV++ +E   M+S  EIK+M+KEV
Sbjct: 473 PVNITTRLILLEQVNMARSLTSVGSNYQRTKTQAIIRVNRCVENEWMTSRNEIKIMRKEV 532

Query: 552 ETMKMQLNQLQM 563
           E MKMQL++LQ+
Sbjct: 533 ENMKMQLSELQI 544

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356574935|ref|XP_003555598.1| PREDICTED: root phototropism protein 3-like [Glycine max] Back     alignment and taxonomy information
>gi|357441619|ref|XP_003591087.1| BTB/POZ domain-containing protein [Medicago truncatula] gi|355480135|gb|AES61338.1| BTB/POZ domain-containing protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|449436004|ref|XP_004135784.1| PREDICTED: root phototropism protein 3-like [Cucumis sativus] gi|449518015|ref|XP_004166039.1| PREDICTED: root phototropism protein 3-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|255542596|ref|XP_002512361.1| protein binding protein, putative [Ricinus communis] gi|223548322|gb|EEF49813.1| protein binding protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|147838167|emb|CAN60915.1| hypothetical protein VITISV_002200 [Vitis vinifera] Back     alignment and taxonomy information
>gi|224141185|ref|XP_002323955.1| predicted protein [Populus trichocarpa] gi|222866957|gb|EEF04088.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225464091|ref|XP_002269380.1| PREDICTED: root phototropism protein 3 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356554757|ref|XP_003545709.1| PREDICTED: root phototropism protein 3-like [Glycine max] Back     alignment and taxonomy information
>gi|449438761|ref|XP_004137156.1| PREDICTED: root phototropism protein 3-like [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query576
TAIR|locus:2173418 746 NPH3 "NON-PHOTOTROPIC HYPOCOTY 0.312 0.241 0.475 6.1e-83
TAIR|locus:2143558592 AT5G03250 [Arabidopsis thalian 0.595 0.579 0.292 4.7e-70
TAIR|locus:2145387607 DOT3 "DEFECTIVELY ORGANIZED TR 0.784 0.744 0.321 2.4e-69
TAIR|locus:2200286631 AT1G67900 [Arabidopsis thalian 0.560 0.511 0.309 6.1e-66
TAIR|locus:2158182579 NPY3 "NAKED PINS IN YUC MUTANT 0.762 0.758 0.332 4.7e-64
TAIR|locus:2028160 665 AT1G30440 [Arabidopsis thalian 0.414 0.359 0.34 1.8e-62
TAIR|locus:2156524614 AT5G48800 [Arabidopsis thalian 0.878 0.824 0.294 5e-60
TAIR|locus:2046961634 NPY2 "NAKED PINS IN YUC MUTANT 0.557 0.506 0.318 3.1e-59
TAIR|locus:2077992569 AT3G50840 [Arabidopsis thalian 0.758 0.768 0.327 4.5e-59
TAIR|locus:504954965604 AT5G67385 [Arabidopsis thalian 0.796 0.759 0.307 4.5e-59
TAIR|locus:2173418 NPH3 "NON-PHOTOTROPIC HYPOCOTYL 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 446 (162.1 bits), Expect = 6.1e-83, Sum P(3) = 6.1e-83
 Identities = 89/187 (47%), Positives = 124/187 (66%)

Query:    49 EALERRNKDWIVRAKVASDLIVQIADSCFHLHKLAMVSKSEYLNRIVFKRRSNGEKENNP 108
             +  E R + W V   + SDL+V+I D  FHLHK  ++S+S  +NR++++ R     + +P
Sbjct:    37 DGFELRGQSWFVATDIPSDLLVKIGDMNFHLHKYPLLSRSGKMNRLIYESR-----DPDP 91

Query:   109 MIFI-SNFPGGIEIFELVVKFCYGWKVDVTATNIAALYSAANFLEMSDDLDQGNLITKTE 167
              I I  + PGG E FEL  KFCYG  VD+TATNI+ L  AA +LEM++DL++GNLI KTE
Sbjct:    92 TILILDDLPGGPEAFELASKFCYGVPVDLTATNISGLRCAAEYLEMTEDLEEGNLIFKTE 151

Query:   168 AFLSFSILSSWKDTFQILKSCESIQSWAKELHILKRCSEAIALKASINKKGFTF-HDGDA 226
             AFLS+ +LSSW+D+  +LKSCE +  WA+ L I++RCSE+IA KA  N KG  + + G A
Sbjct:   152 AFLSYVVLSSWRDSILVLKSCEKLSPWAENLQIVRRCSESIAWKACSNPKGIRWAYTGKA 211

Query:   227 QGALANN 233
                   N
Sbjct:   212 PSPSTTN 218
GO:0004871 "signal transducer activity" evidence=IEA;ISS
GO:0005634 "nucleus" evidence=ISM
GO:0005886 "plasma membrane" evidence=ISM;IDA;NAS
GO:0009416 "response to light stimulus" evidence=ISS
GO:0005515 "protein binding" evidence=IPI
GO:0009785 "blue light signaling pathway" evidence=IGI;IPI
GO:0016567 "protein ubiquitination" evidence=IMP
GO:0000271 "polysaccharide biosynthetic process" evidence=RCA
GO:0009637 "response to blue light" evidence=RCA
GO:0009664 "plant-type cell wall organization" evidence=RCA
GO:0009825 "multidimensional cell growth" evidence=RCA
GO:0009832 "plant-type cell wall biogenesis" evidence=RCA
GO:0009932 "cell tip growth" evidence=RCA
GO:0010155 "regulation of proton transport" evidence=RCA
GO:0010817 "regulation of hormone levels" evidence=RCA
GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA
GO:0046777 "protein autophosphorylation" evidence=RCA
GO:0048767 "root hair elongation" evidence=RCA
GO:0071555 "cell wall organization" evidence=RCA
GO:0009638 "phototropism" evidence=IMP
TAIR|locus:2143558 AT5G03250 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2145387 DOT3 "DEFECTIVELY ORGANIZED TRIBUTARIES 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2200286 AT1G67900 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2158182 NPY3 "NAKED PINS IN YUC MUTANTS 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2028160 AT1G30440 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2156524 AT5G48800 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2046961 NPY2 "NAKED PINS IN YUC MUTANTS 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2077992 AT3G50840 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:504954965 AT5G67385 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9LFU0DOT3_ARATHNo assigned EC number0.32090.88540.8401yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
eugene3.00130227
hypothetical protein (566 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query576
pfam03000249 pfam03000, NPH3, NPH3 family 2e-74
pfam00651101 pfam00651, BTB, BTB/POZ domain 3e-08
smart0022597 smart00225, BTB, Broad-Complex, Tramtrack and Bric 2e-05
PHA03098534 PHA03098, PHA03098, kelch-like protein; Provisiona 0.002
>gnl|CDD|217312 pfam03000, NPH3, NPH3 family Back     alignment and domain information 
 Score =  236 bits (605), Expect = 2e-74
 Identities = 93/250 (37%), Positives = 143/250 (57%), Gaps = 16/250 (6%)

Query: 246 WWFEDVSSLRIDHFIEVINSIKRKGITSELVGSCIAKWTSKWLSQITSGLNNVTPKQLTH 305
           WWFED+S L ID F  VI ++K +G+  E++G  +  +  KWL  ++   ++    +   
Sbjct: 3   WWFEDLSELSIDLFKRVITAMKSRGVKPEVIGEALMHYAKKWLPGLSRSGSSEEDSEEEQ 62

Query: 306 QLRRVTTESLIRILPEEENAVSCNFLLHLLKLGLMMKINAELLKKLERRIAFMLEHCRVS 365
              R   E+++ +LP E+ +VSC+FL  LL+  +++  +    ++LERRI   L+   + 
Sbjct: 63  ---RALLETIVSLLPSEKGSVSCSFLFKLLRAAIILGASESCREELERRIGLQLDQATLD 119

Query: 366 DLLVRN-YGENDTVYHVGIVVRVVECYVSFVLRN------------PAPRIFVVGRLVDG 412
           DLL+ + Y   +T+Y V +V R++E ++S                  +  +  V +LVDG
Sbjct: 120 DLLIPSGYSGEETLYDVDLVQRILEVFLSRDAATQSSDDEDSEASPSSSSLLKVAKLVDG 179

Query: 413 YLTLIARDKNLAAKRFQLLAEALPKSARVCDDNLYRAMDIYLKAHPDLTEEERTSVSRAM 472
           YL  IA D NL   +F  LAEA+P SAR   D LYRA+DIYLKAHP+L+E E+  + R M
Sbjct: 180 YLAEIAPDPNLKLSKFIALAEAVPDSARPSHDGLYRAIDIYLKAHPNLSESEKKRLCRLM 239

Query: 473 EFHKLSQEAR 482
           +  KLSQEA 
Sbjct: 240 DCQKLSQEAC 249

Phototropism of Arabidopsis thaliana seedlings in response to a blue light source is initiated by nonphototropic hypocotyl 1 (NPH1), a light-activated serine-threonine protein kinase. Mutations in NPH3 disrupt early signaling occurring downstream of the NPH1 photoreceptor. The NPH3 gene encodes a NPH1-interacting protein. NPH3 is a member of a large protein family, apparently specific to higher plants, and may function as an adapter or scaffold protein to bring together the enzymatic components of a NPH1-activated phosphorelay. Length = 249
>gnl|CDD|216043 pfam00651, BTB, BTB/POZ domain Back     alignment and domain information
>gnl|CDD|197585 smart00225, BTB, Broad-Complex, Tramtrack and Bric a brac Back     alignment and domain information
>gnl|CDD|222983 PHA03098, PHA03098, kelch-like protein; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 576
PF03000258 NPH3: NPH3 family; InterPro: IPR004249 The RPT2 pr 100.0
KOG4441571 consensus Proteins containing BTB/POZ and Kelch do 99.96
PHA02713557 hypothetical protein; Provisional 99.94
PHA02790480 Kelch-like protein; Provisional 99.92
PHA03098534 kelch-like protein; Provisional 99.91
PF00651111 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB ( 99.67
smart0022590 BTB Broad-Complex, Tramtrack and Bric a brac. Doma 99.55
KOG4350 620 consensus Uncharacterized conserved protein, conta 99.31
KOG2075521 consensus Topoisomerase TOP1-interacting protein B 99.18
KOG4591280 consensus Uncharacterized conserved protein, conta 98.78
KOG4682488 consensus Uncharacterized conserved protein, conta 98.54
KOG07831267 consensus Uncharacterized conserved protein, conta 98.3
KOG0783 1267 consensus Uncharacterized conserved protein, conta 98.22
PF11822317 DUF3342: Domain of unknown function (DUF3342); Int 97.59
smart00512104 Skp1 Found in Skp1 protein family. Family of Skp1 96.48
PF0221494 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassi 96.32
KOG2716230 consensus Polymerase delta-interacting protein PDI 95.6
PF07707103 BACK: BTB And C-terminal Kelch; InterPro: IPR01170 95.24
KOG3473112 consensus RNA polymerase II transcription elongati 94.62
smart00875101 BACK BTB And C-terminal Kelch. The BACK domain is 94.08
KOG2838401 consensus Uncharacterized conserved protein, conta 94.05
PF0393162 Skp1_POZ: Skp1 family, tetramerisation domain; Int 93.21
KOG1724162 consensus SCF ubiquitin ligase, Skp1 component [Po 90.26
KOG0511516 consensus Ankyrin repeat protein [General function 89.47
KOG2838401 consensus Uncharacterized conserved protein, conta 87.4
>PF03000 NPH3: NPH3 family; InterPro: IPR004249 The RPT2 protein is a signal transducer of the phototropic response in Arabidopsis thaliana Back     alignment and domain information 
Probab=100.00  E-value=1e-84  Score=657.22  Aligned_cols=239  Identities=41%  Similarity=0.710  Sum_probs=215.8

Q ss_pred             CcceecccccCChhHHHHHHHHhhhcCCChhHHHHHHHHHHhhhhcccccC---CCC-CCcchhhhHHHHHHHHHHHHhc
Q 008150          244 DSWWFEDVSSLRIDHFIEVINSIKRKGITSELVGSCIAKWTSKWLSQITSG---LNN-VTPKQLTHQLRRVTTESLIRIL  319 (576)
Q Consensus       244 ~dWW~EDl~~L~~d~f~rvI~am~~~gl~~e~I~~aL~~Yakk~L~~~~~g---~~~-~~~~~~r~~~~r~LLE~IV~LL  319 (576)
                      +||||||++.|++++|+|||.+|+++|+++++|+++|++||++|+|.....   ... ..........+|.+||+||+||
T Consensus         1 ~dWW~eDl~~L~id~f~rvi~a~~~~~~~~~~I~~~l~~Ya~k~l~~~~~~~~~~~~~~~~~~~~~~~~r~llEtiV~lL   80 (258)
T PF03000_consen    1 KDWWFEDLSELSIDLFKRVISAMKSKGMKPEVIGEALMHYAKKWLPGLSRSSSGSSSSAESSTSSENEQRELLETIVSLL   80 (258)
T ss_pred             CCccHHHHHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCcccccccccccccccchhHHHHHHHHHHHHHhC
Confidence            489999999999999999999999999999999999999999999943110   010 1111224567899999999999


Q ss_pred             CCCCCccchHHHHHHHHhhhhccCCHHHHHHHHHHHHhhhcccccccceeec-CCCCCcccchhHHHHHHHHHHhchh--
Q 008150          320 PEEENAVSCNFLLHLLKLGLMMKINAELLKKLERRIAFMLEHCRVSDLLVRN-YGENDTVYHVGIVVRVVECYVSFVL--  396 (576)
Q Consensus       320 P~~~~~vsc~FLf~LLR~a~~l~aS~~Cr~~LE~rIg~qLd~AtldDLLIps-~~~~~~lyDvd~V~riv~~Fl~~~~--  396 (576)
                      |.+++++||+|||+|||+|+++++|..||.+||+|||.|||||||||||||+ ++..+|+||||+|+|||++|+....  
T Consensus        81 P~e~~svsc~FL~~LLr~A~~l~as~~cr~~Le~rIg~qLd~AtldDLLIP~~~~~~~t~yDVd~V~riv~~Fl~~~~~~  160 (258)
T PF03000_consen   81 PPEKGSVSCSFLFRLLRAAIMLGASSACRNELERRIGSQLDQATLDDLLIPSSPSGEDTLYDVDLVQRIVEHFLSQEEEA  160 (258)
T ss_pred             CCCCCcccHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhhccHHHhcccCCCCcccchhhHHHHHHHHHHHHhccccc
Confidence            9999999999999999999999999999999999999999999999999999 3344699999999999999998621  


Q ss_pred             ------------cCCCchhhHHHHhhhhhhhhhcCCCCCChhHHHHHHHHcCCCccccchhhHHHHHHHHHhCCCCCHHH
Q 008150          397 ------------RNPAPRIFVVGRLVDGYLTLIARDKNLAAKRFQLLAEALPKSARVCDDNLYRAMDIYLKAHPDLTEEE  464 (576)
Q Consensus       397 ------------~~~~~~l~~VakLvD~YLaEiA~D~~L~~~kF~~Lae~lP~~aR~~~DgLYrAIDiYLk~Hp~ls~~E  464 (576)
                                  ..+.+++.+||||||+||+|||+|+||+|+||++|||++|++||++|||||||||||||+||+||++|
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~VakLvD~YLaEiA~D~~L~~~kF~~Lae~lP~~aR~~hD~LYrAID~YLk~Hp~ls~~E  240 (258)
T PF03000_consen  161 GEEEESESESGSSPSSSSLVKVAKLVDGYLAEIAPDPNLKPSKFVALAEALPDSARPSHDGLYRAIDIYLKAHPGLSEEE  240 (258)
T ss_pred             ccccccccccccCCChHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHCCHhhhhccchHHHHHHHHHHHcccCCHHH
Confidence                        12345799999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhcccccccccCCHHHH
Q 008150          465 RTSVSRAMEFHKLSQEAR  482 (576)
Q Consensus       465 r~~lC~~ldc~KLS~Eac  482 (576)
                      |++||++|||||||+|||
T Consensus       241 r~~lC~~ldc~KLS~EAC  258 (258)
T PF03000_consen  241 RKRLCRLLDCQKLSPEAC  258 (258)
T ss_pred             HHHHHhhCCcccCCcccC
Confidence            999999999999999998

The RPT2 gene is light inducible; encodes a novel protein with putative phosphorylation sites, a nuclear localization signal, a BTB/POZ domain (IPR000210 from INTERPRO), and a coiled-coil domain. RPT2 belongs to a large gene family that includes the recently isolated NPH3 gene []. The NPH3 protein is a NPH1 photoreceptor-interacting protein that is essential for phototropism. Phototropism of A. thaliana seedlings in response to a blue light source is initiated by nonphototropic hypocotyl 1 (NPH1), a light-activated serine-threonine protein kinase []. NPH3 is a member of a large protein family, apparently specific to higher plants, and may function as an adapter or scaffold protein to bring together the enzymatic components of a NPH1-activated phosphorelay []. Many of the proteins in this group also contain the BTB/POZ domain (IPR000210 from INTERPRO) at the N-terminal.; GO: 0004871 signal transducer activity, 0009416 response to light stimulus
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] Back     alignment and domain information
>PHA02713 hypothetical protein; Provisional Back     alignment and domain information
>PHA02790 Kelch-like protein; Provisional Back     alignment and domain information
>PHA03098 kelch-like protein; Provisional Back     alignment and domain information
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins Back     alignment and domain information
>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac Back     alignment and domain information
>KOG4350 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] Back     alignment and domain information
>KOG2075 consensus Topoisomerase TOP1-interacting protein BTBD1 [Function unknown] Back     alignment and domain information
>KOG4591 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] Back     alignment and domain information
>KOG4682 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] Back     alignment and domain information
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown] Back     alignment and domain information
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown] Back     alignment and domain information
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised Back     alignment and domain information
>smart00512 Skp1 Found in Skp1 protein family Back     alignment and domain information
>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ] Back     alignment and domain information
>KOG2716 consensus Polymerase delta-interacting protein PDIP1 and related proteins, contain BTB/POZ domain [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF07707 BACK: BTB And C-terminal Kelch; InterPro: IPR011705 This domain is found associated with (IPR000210 from INTERPRO) and (IPR006652 from INTERPRO) Back     alignment and domain information
>KOG3473 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin C [Transcription] Back     alignment and domain information
>smart00875 BACK BTB And C-terminal Kelch Back     alignment and domain information
>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] Back     alignment and domain information
>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex [] Back     alignment and domain information
>KOG1724 consensus SCF ubiquitin ligase, Skp1 component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0511 consensus Ankyrin repeat protein [General function prediction only] Back     alignment and domain information
>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query576
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-05
2ihc_A124 Transcription regulator protein BACH1; BRIC-A-BRAC 2e-07
2z8h_A138 Transcription regulator protein BACH1; BTB, POZ, d 5e-07
1r29_A127 B-cell lymphoma 6 protein; BTB domain, transcripti 6e-07
3ohu_A125 Transcription regulator protein BACH2; BTB/POZ dom 7e-07
2vpk_A116 Myoneurin; transcription regulation, transcription 8e-07
3m5b_A119 Zinc finger and BTB domain-containing protein 32; 8e-07
2if5_A120 Zinc finger and BTB domain-containing protein 7A; 2e-06
3b84_A119 Zinc finger and BTB domain-containing protein 48; 4e-06
2q81_A119 MIZ-1 protein; BTB/POZ domain, transcription; HET: 4e-06
1buo_A121 POZ domain, protein (promyelocytic leukemia zinc f 6e-06
3ga1_A129 Nucleus accumbens-associated protein 1; BTB/POZ do 6e-06
2yy9_A135 Zinc finger and BTB domain-containing protein 48; 6e-06
2ppi_A144 Gigaxonin; BTB domain, protein degradation, struct 1e-05
3hve_A256 Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, dis 1e-04
2vkp_A109 BTB/POZ domain-containing protein 6; protein-bindi 1e-04
3fkc_A116 Transcriptional regulator kaiso; zinc finger and B 2e-04
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 54.5 bits (130), Expect = 7e-08
 Identities = 44/335 (13%), Positives = 105/335 (31%), Gaps = 84/335 (25%)

Query: 37  CIIFPANVSMVAEALERRNKDWIVRAKVASDLIVQIADSCFHLHKLAMVSKSEYLNRIVF 96
               P  +S++AE++      W     V  D +  I +S      L ++  +EY  R +F
Sbjct: 323 LTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESS-----LNVLEPAEY--RKMF 375

Query: 97  KRRSNGEKENNPMIFISNFPGGIEIFELVVKFCYGWKVDVTATNIAALYSAANFLEMSDD 156
                        + +  FP                   +    ++ ++      ++   
Sbjct: 376 D-----------RLSV--FPPS---------------AHIPTILLSLIWFDVIKSDVMVV 407

Query: 157 LDQGNLITKTEAFLSFSILSSWKDTFQILKSCESIQSWAKELHILKRCSEAIAL-KASIN 215
           +++            +S++        I  S  SI      L +  +     AL ++ ++
Sbjct: 408 VNK---------LHKYSLVEKQPKESTI--SIPSIY-----LELKVKLENEYALHRSIVD 451

Query: 216 KKGFTFHDGDAQGALANNVED--W--------EKEGRADSWWFEDVSSLRID-HFIEVIN 264
              +          L     D  +        +     +         + +D  F+E   
Sbjct: 452 H--YNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPER--MTLFRMVFLDFRFLE--Q 505

Query: 265 SIKRKGITSELVGSCIAKWT--SKWLSQITSGLNNVTPKQLTHQLRRVTTESLIRILPE- 321
            I+         GS +        +   I    N+   ++L          +++  LP+ 
Sbjct: 506 KIRHDSTAWNASGSILNTLQQLKFYKPYICD--NDPKYERL--------VNAILDFLPKI 555

Query: 322 EENAVSCNFLLHLLKLGLMMKINAELLKKLERRIA 356
           EEN +   +   LL++ LM + +  + ++  +++ 
Sbjct: 556 EENLICSKY-TDLLRIALMAE-DEAIFEEAHKQVQ 588
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens} Length = 124 Back     alignment and structure
>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus} Length = 138 Back     alignment and structure
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A Length = 127 Back     alignment and structure
>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} PDB: 3ohv_A Length = 125 Back     alignment and structure
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens} Length = 116 Back     alignment and structure
>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} Length = 119 Back     alignment and structure
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A Length = 120 Back     alignment and structure
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens} Length = 119 Back     alignment and structure
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A Length = 119 Back     alignment and structure
>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A Length = 121 Back     alignment and structure
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens} Length = 129 Back     alignment and structure
>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus} Length = 135 Back     alignment and structure
>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} Length = 144 Back     alignment and structure
>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B Length = 256 Back     alignment and structure
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens} Length = 109 Back     alignment and structure
>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain containing 33, kaiso transcriptio ZNF-kaiso, ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB: 3m4t_A 3m8v_A Length = 116 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query576
3i3n_A279 Kelch-like protein 11; structural genomics, BTB, K 99.95
3hve_A256 Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, dis 99.95
2if5_A120 Zinc finger and BTB domain-containing protein 7A; 99.85
3b84_A119 Zinc finger and BTB domain-containing protein 48; 99.85
2z8h_A138 Transcription regulator protein BACH1; BTB, POZ, d 99.85
1r29_A127 B-cell lymphoma 6 protein; BTB domain, transcripti 99.84
3ga1_A129 Nucleus accumbens-associated protein 1; BTB/POZ do 99.84
3htm_A172 Speckle-type POZ protein; BTB, SPOP, ubiquitin, li 99.84
1buo_A121 POZ domain, protein (promyelocytic leukemia zinc f 99.84
2vpk_A116 Myoneurin; transcription regulation, transcription 99.83
2vkp_A109 BTB/POZ domain-containing protein 6; protein-bindi 99.83
3ohu_A125 Transcription regulator protein BACH2; BTB/POZ dom 99.83
4eoz_A145 Speckle-type POZ protein; E3 ubiquitin ligase, nuc 99.83
2q81_A119 MIZ-1 protein; BTB/POZ domain, transcription; HET: 99.83
2ihc_A124 Transcription regulator protein BACH1; BRIC-A-BRAC 99.82
2yy9_A135 Zinc finger and BTB domain-containing protein 48; 99.82
2ppi_A144 Gigaxonin; BTB domain, protein degradation, struct 99.82
3m5b_A119 Zinc finger and BTB domain-containing protein 32; 99.81
3hqi_A312 Speckle-type POZ protein; SPOP, ubiquitin, puckere 99.76
3fkc_A116 Transcriptional regulator kaiso; zinc finger and B 99.74
2ast_A159 S-phase kinase-associated protein 1A; SCF-substrat 99.33
4ajy_C97 Transcription elongation factor B polypeptide 1; E 99.12
1fs1_B141 SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, le 99.01
2p1m_A160 SKP1-like protein 1A; F-BOX, leucine rich repeat, 98.9
1hv2_A99 Elongin C, ELC1; protein-peptide complex, signalin 98.27
2fnj_C96 Transcription elongation factor B polypeptide 1; b 98.23
3v7d_A169 Suppressor of kinetochore protein 1; WD 40 domain, 98.08
1vcb_B112 Protein (elongin C); tumor suppressor, cancer, ubi 97.61
3drz_A107 BTB/POZ domain-containing protein KCTD5; potassium 97.42
2eqx_A105 Kelch repeat and BTB domain-containing protein 4; 96.73
3drx_A202 BTB/POZ domain-containing protein KCTD5; golgi, gr 95.43
3kvt_A115 Potassium channel protein SHAW; tetramerization do 92.97
1s1g_A124 Potassium voltage-gated channel subfamily D membe; 92.79
2nz0_B140 Potassium voltage-gated channel subfamily D membe; 90.36
1nn7_A105 Potassium channel KV4.2; teteramerization domain, 88.56
1t1d_A100 Protein (potassium channel KV1.1); potassium chann 87.59
2yy0_A53 C-MYC-binding protein; conserved hypothetical prot 85.93
1deb_A54 APC protein, adenomatous polyposis coli protein; c 80.16
>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} PDB: 4ap2_A* 4apf_A Back     alignment and structure
Probab=99.95  E-value=7.3e-29  Score=251.33  Aligned_cols=235  Identities=14%  Similarity=0.187  Sum_probs=185.6

Q ss_pred             HHhhcCCceeEEEEEC---CeEeeeccchhcccCHHHHHhhccc-ccCCCCCCCCeEEec------CCCCcHHHHHHHHH
Q 008150           58 WIVRAKVASDLIVQIA---DSCFHLHKLAMVSKSEYLNRIVFKR-RSNGEKENNPMIFIS------NFPGGIEIFELVVK  127 (576)
Q Consensus        58 w~~~~~~~~DV~v~V~---~~~F~lHK~vLas~S~yfr~lf~~~-~e~~~~~~~~~v~L~------~~pgGae~felv~~  127 (576)
                      .++.+|.+|||+|.||   |+.|++||.+|+++|+||++||+++ .|+.    ...|.|+      +++  +++|+.+++
T Consensus        25 ~l~~~~~~~Dv~l~v~~~~~~~f~~Hr~vLaa~S~yF~~mf~~~~~e~~----~~~i~l~~~~~~~~v~--~~~f~~ll~   98 (279)
T 3i3n_A           25 EQRRQGLFCDITLCFGGAGGREFRAHRSVLAAATEYFTPLLSGQFSESR----SGRVEMRKWSSEPGPE--PDTVEAVIE   98 (279)
T ss_dssp             HHHHHTTTCCEEEECC----CEEEECHHHHHHHCTTSGGGCCC------------EEECCCCSSTTCSC--HHHHHHHHH
T ss_pred             HHHhcCCCCCeEEEEcCCCCeEEehHHHHHHHcCHHHHHHhcCCCcccc----CCeEEeccccccCCCC--HHHHHHHHH
Confidence            4888999999999998   9999999999999999999999876 4443    3489998      565  899999999


Q ss_pred             HHcCceEeeccccHHHHHHHHhhcccccccCcChHHHHHHHHHHHhhhcchhhHHHHHhccHhHHHHHHHhchhhhhhHH
Q 008150          128 FCYGWKVDVTATNIAALYSAANFLEMSDDLDQGNLITKTEAFLSFSILSSWKDTFQILKSCESIQSWAKELHILKRCSEA  207 (576)
Q Consensus       128 FcY~~~i~it~~NV~~L~cAA~~LqMte~~~~~NL~~~ce~FL~~~v~~sw~~~i~~L~sC~~L~~~Ae~l~iv~rcids  207 (576)
                      |+|||++.++.+||..|+.||++|||++      |...|+.||.+.+.         ..||..++.+|+.+++     +.
T Consensus        99 ~~Ytg~~~i~~~~v~~ll~~A~~l~i~~------L~~~c~~~L~~~l~---------~~n~~~i~~~A~~~~~-----~~  158 (279)
T 3i3n_A           99 YMYTGRIRVSTGSVHEVLELADRFLLIR------LKEFCGEFLKKKLH---------LSNCVAIHSLAHMYTL-----SQ  158 (279)
T ss_dssp             HHHHSEEEEETTTHHHHHHHHHHTTCHH------HHHHHHHHHHHHCC---------TTTHHHHHHHHHHTTC-----HH
T ss_pred             hhCcCCcccCHHHHHHHHHHHHHHCcHH------HHHHHHHHHHHcCC---------cchHHHHHHHHHHcCc-----HH
Confidence            9999999999999999999999999996      99999999999884         4688899999999875     33


Q ss_pred             HHHHhccCCCCccccCCCCcccccccccccccccCCCcceecccccCChhHHHHHHHHhhhcCCChhHHHHHHHHHHhhh
Q 008150          208 IALKASINKKGFTFHDGDAQGALANNVEDWEKEGRADSWWFEDVSSLRIDHFIEVINSIKRKGITSELVGSCIAKWTSKW  287 (576)
Q Consensus       208 La~kA~~~~~~f~~~~~~~~~~l~~~~~~~~~~~~~~dWW~EDl~~L~~d~f~rvI~am~~~gl~~e~I~~aL~~Yakk~  287 (576)
                      |..++..    |.         .         +.+...+-.++|..|+.+.+..+++...-..-+|+.|+++++.|+++.
T Consensus       159 L~~~~~~----~i---------~---------~~f~~v~~~~~f~~L~~~~l~~lL~~d~L~v~sE~~vf~av~~W~~~~  216 (279)
T 3i3n_A          159 LALKAAD----MI---------R---------RNFHKVIQDEEFYTLPFHLIRDWLSDLEITVDSEEVLFETVLKWVQRN  216 (279)
T ss_dssp             HHHHHHH----HH---------H---------HTHHHHTTSSGGGGSCHHHHHHHHTCSSCCCSCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHH----HH---------H---------HHHHHHhcCcChhcCCHHHHHHHhcCcCCCCCCHHHHHHHHHHHHHcC
Confidence            3333321    10         0         001111235789999999977777765555557899999999999987


Q ss_pred             hcccccCCCCCCcchhhhHHHHHHHHHHHHhcCCCCCccchHHHHHHHHhhhhccCCHHHHHHHHHHHHhhh
Q 008150          288 LSQITSGLNNVTPKQLTHQLRRVTTESLIRILPEEENAVSCNFLLHLLKLGLMMKINAELLKKLERRIAFML  359 (576)
Q Consensus       288 L~~~~~g~~~~~~~~~r~~~~r~LLE~IV~LLP~~~~~vsc~FLf~LLR~a~~l~aS~~Cr~~LE~rIg~qL  359 (576)
                      .+            . |..+...|++. |++     +.+|..+|..+++...++..++.|+..|.+...-++
T Consensus       217 ~~------------~-r~~~~~~ll~~-VRf-----~l~~~~~L~~~v~~~~l~~~~~~c~~~l~ea~~~~~  269 (279)
T 3i3n_A          217 AE------------E-RERYFEELFKL-LRL-----SQMKPTYLTRHVKPERLVANNEVCVKLVADAVERHA  269 (279)
T ss_dssp             HH------------H-HTTTHHHHHTT-SCG-----GGSCHHHHHHTTTTSHHHHTCHHHHHHHHHHHHHHH
T ss_pred             HH------------H-HHHHHHHHHHh-cCC-----CCCCHHHHHHHhhccchhcCCHHHHHHHHHHHHhcc
Confidence            65            1 33445778887 465     689999999999999999999999999988775544
>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B Back     alignment and structure
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A Back     alignment and structure
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens} Back     alignment and structure
>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus} Back     alignment and structure
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A Back     alignment and structure
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens} Back     alignment and structure
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens} Back     alignment and structure
>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A Back     alignment and structure
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens} Back     alignment and structure
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens} Back     alignment and structure
>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} SCOP: d.42.1.0 PDB: 3ohv_A Back     alignment and structure
>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens} Back     alignment and structure
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A Back     alignment and structure
>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens} Back     alignment and structure
>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus} Back     alignment and structure
>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} Back     alignment and structure
>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} SCOP: d.42.1.0 Back     alignment and structure
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A Back     alignment and structure
>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain containing 33, kaiso transcriptio ZNF-kaiso, ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB: 3m4t_A 3m8v_A Back     alignment and structure
>4ajy_C Transcription elongation factor B polypeptide 1; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 2izv_C 3dcg_B 3zrc_B* 3zrf_B 3ztc_B* 3ztd_B* 3zun_B* 2c9w_C 4awj_B* 4b95_B* 4b9k_B* 2fnj_C 1lqb_B 1lm8_C 2jz3_C 2xai_B 4b9k_E* Back     alignment and structure
>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D Back     alignment and structure
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A* Back     alignment and structure
>1hv2_A Elongin C, ELC1; protein-peptide complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.42.1.1 Back     alignment and structure
>2fnj_C Transcription elongation factor B polypeptide 1; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.42.1.1 PDB: 1lqb_B 1lm8_C 2jz3_C 2xai_B 2c9w_C 2izv_C 3dcg_B 3zrc_B* 3zrf_B Back     alignment and structure
>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A* Back     alignment and structure
>1vcb_B Protein (elongin C); tumor suppressor, cancer, ubiquitin, beta sandwich, transcription, transcriptional elongation; 2.70A {Homo sapiens} SCOP: d.42.1.1 Back     alignment and structure
>3drz_A BTB/POZ domain-containing protein KCTD5; potassium channel domain T1, pentamer, unkno function; 1.90A {Homo sapiens} Back     alignment and structure
>2eqx_A Kelch repeat and BTB domain-containing protein 4; BACK domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>3drx_A BTB/POZ domain-containing protein KCTD5; golgi, grAsp55, potassium channel domain T1, pentameric assembly, HOST-virus interaction, nucleus; 3.11A {Homo sapiens} PDB: 3dry_A Back     alignment and structure
>3kvt_A Potassium channel protein SHAW; tetramerization domain, molecular recogni zinc-binding; 2.00A {Aplysia californica} SCOP: d.42.1.2 Back     alignment and structure
>1s1g_A Potassium voltage-gated channel subfamily D membe; K+ channels, tetramerization domain, T1 domain, transport PR; 2.60A {Homo sapiens} SCOP: d.42.1.2 Back     alignment and structure
>2nz0_B Potassium voltage-gated channel subfamily D membe; KV4.3, kchip1, membrane protein; 3.20A {Homo sapiens} PDB: 2i2r_A Back     alignment and structure
>1nn7_A Potassium channel KV4.2; teteramerization domain, voltage gated potassium channel SHAL, membrane protein; 2.10A {Rattus norvegicus} SCOP: d.42.1.2 Back     alignment and structure
>1t1d_A Protein (potassium channel KV1.1); potassium channels, tetramerization domain, aplysia KV1.1, proton transport, membrane protein; 1.51A {Aplysia californica} SCOP: d.42.1.2 PDB: 1eod_A 1eof_A 1eoe_A 1a68_A 1qdv_A 1exb_E* 1qdw_A 1dsx_A Back     alignment and structure
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens} Back     alignment and structure
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 576
d1buoa_121 d.42.1.1 (A:) Promyelocytic leukaemia zinc finger 2e-06
d1r29a_122 d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB 3e-06
>d1buoa_ d.42.1.1 (A:) Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Length = 121 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.0 bits (106), Expect = 2e-06
 Identities = 14/90 (15%), Positives = 33/90 (36%), Gaps = 10/90 (11%)

Query: 66  SDLIVQIADSCFHLHKLAMVSKSEYLNRIVFKRRSNGEKENNPMIFISNFPGGIEIFELV 125
            D+++ +    FH H+  +   S+                N+    +       + F+ +
Sbjct: 29  CDVVIMVDSQEFHAHRTVLACTSKM--------FEILFHRNSQHYTLDFLSP--KTFQQI 78

Query: 126 VKFCYGWKVDVTATNIAALYSAANFLEMSD 155
           +++ Y   +   A ++  L  AA  LE+  
Sbjct: 79  LEYAYTATLQAKAEDLDDLLYAAEILEIEY 108
>d1r29a_ d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Length = 122 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query576
d1buoa_121 Promyelocytic leukaemia zinc finger (PLZF) protein 99.86
d1r29a_122 B-cell lymphoma 6 (Bcl6) protein BTB domain {Human 99.86
d1hv2a_99 Elongin C {Baker's yeast (Saccharomyces cerevisiae 97.32
d2c9wc196 Elongin C {Human (Homo sapiens) [TaxId: 9606]} 97.06
d3kvta_103 akv3.1 voltage-gated potassium channel {California 95.87
d1nn7a_105 Potassium channel kv4.2 {Rat (Rattus norvegicus) [ 95.71
d1t1da_100 Shaker potassium channel {California sea hare (Apl 93.64
d1nexa272 Centromere DNA-binding protein complex Cbf3 subuni 91.51
d1fs1b261 Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sa 91.38
>d1buoa_ d.42.1.1 (A:) Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=2.1e-22  Score=179.16  Aligned_cols=112  Identities=15%  Similarity=0.255  Sum_probs=97.2

Q ss_pred             cccchHHHHhhhhHHHhhcCCceeEEEEECCeEeeeccchhcccCHHHHHhhcccccCCCCCCCCeEEecCCCCcHHHHH
Q 008150           44 VSMVAEALERRNKDWIVRAKVASDLIVQIADSCFHLHKLAMVSKSEYLNRIVFKRRSNGEKENNPMIFISNFPGGIEIFE  123 (576)
Q Consensus        44 ~~~~~~~~~~~~~~w~~~~~~~~DV~v~V~~~~F~lHK~vLas~S~yfr~lf~~~~e~~~~~~~~~v~L~~~pgGae~fe  123 (576)
                      .|+.+..+-.+-+ -++.+|.+|||+|.|+|++|++||.+|+++|+||++||.+.        ..++.+++++  +++|+
T Consensus         8 ~~~h~~~ll~~l~-~l~~~~~~~Dv~l~v~~~~~~aHk~vLaa~S~~F~~lf~~~--------~~~i~~~~v~--~~~f~   76 (121)
T d1buoa_           8 NPSHPTGLLCKAN-QMRLAGTLCDVVIMVDSQEFHAHRTVLACTSKMFEILFHRN--------SQHYTLDFLS--PKTFQ   76 (121)
T ss_dssp             CTTHHHHHHHHHH-HHHHHTTTCCEEEEESSCEEEECHHHHHHHCHHHHHHTTSC--------CSEEEECSSC--HHHHH
T ss_pred             CCchHHHHHHHHH-HHHhcCCcEeEEEEECCEEEEEEHHHhcccChhhhhhccCc--------cceeecCCCC--HHHHH
Confidence            3444444444323 27888999999999999999999999999999999999643        2379999998  88999


Q ss_pred             HHHHHHcCceEeeccccHHHHHHHHhhcccccccCcChHHHHHHHHHHH
Q 008150          124 LVVKFCYGWKVDVTATNIAALYSAANFLEMSDDLDQGNLITKTEAFLSF  172 (576)
Q Consensus       124 lv~~FcY~~~i~it~~NV~~L~cAA~~LqMte~~~~~NL~~~ce~FL~~  172 (576)
                      .+++|+|||++.++.+||..++.||++|+|++      |.+.|++||+.
T Consensus        77 ~ll~~~Ytg~i~l~~~~v~~ll~~A~~l~~~~------L~~~C~~~L~~  119 (121)
T d1buoa_          77 QILEYAYTATLQAKAEDLDDLLYAAEILEIEY------LEEQCLKMLET  119 (121)
T ss_dssp             HHHHHHHHSCCCCCGGGHHHHHHHHHHHTCHH------HHHHHHHHHHH
T ss_pred             HHHHheEccccCCcHHHHHHHHHHHHHhCCHH------HHHHHHHHHHh
Confidence            99999999999999999999999999999996      99999999976
>d1r29a_ d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1hv2a_ d.42.1.1 (A:) Elongin C {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2c9wc1 d.42.1.1 (C:17-112) Elongin C {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d3kvta_ d.42.1.2 (A:) akv3.1 voltage-gated potassium channel {California sea hare (Aplysia californica) [TaxId: 6500]} Back     information, alignment and structure
>d1nn7a_ d.42.1.2 (A:) Potassium channel kv4.2 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1t1da_ d.42.1.2 (A:) Shaker potassium channel {California sea hare (Aplysia californica) [TaxId: 6500]} Back     information, alignment and structure
>d1nexa2 d.42.1.1 (A:4-103) Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1fs1b2 d.42.1.1 (B:2-68) Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure