Citrus Sinensis ID: 008157

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570------
MKTRNLVVGMLCATVLAPILIFTSTFKDSYPSSSESGEFLEDLTAFTVGGDARHLNLLPQESSTTLSLKQPILVISDKIAQHSAHSQSQSQGSWEHKSARVLSATTNGLDQSKTDNPIRQVTDLTKTQINKHADQEQIKASDNHISAHHSQILDTKHQQESSLTYGVLEKKEPTKINNEKQTEQTTPPDFRVRQLKDQLIKAKVYLSLPAMRNNANFVRELRLRIKEVQRALGDATKDSDLPRIANDRLKAMEQSLAKGKQIQDDCAAVVKKLRAMLHSTEEQLRVHKKQTLFLTQLTAKTLPKGLHCLPLRLTTEYYTLNSSQRHFPNQEKLEDPRLFHYALFSDNVLAAAVVVNSTVTHAKHPSNHVFHIVTDRLNYAAMRMWFLANPPGRATVQVQNIEEFTWLNSSYSPVLKQLNSQSMIDYYFRAHRANSDSNLKFRNPKYLSILNHLRFYLPEVFPRLNKVLFLDDDVVVQKDLSGLWSIDLKGKVNGAVETCGETFHRFDRYLNFSNPLISKNFDPRACGWAYGMNIFDLDEWRRQNITDVYHTWQKMVSDVLSSWLASLPNFINYFRI
ccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccEEcccccccccccccccccccccccEEEEEccccccccccccccccccccccccccccccccccccccccccccccccHHHHHcccHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHcccccccccccccccccccEEEEEEccccccccEEEEEccccccccccEEEEEEEcccHHHHHHHHHHHccccccEEEEEEccHHHccccccccHHHHccccccEEEEEEcccccccccccccccccccHHHHHHcccccccccccEEEEEEccEEEccccHHHHcccccccEEEEEcccccccHHHHcccccccHHHcccccccccccccccEEEEHHHHHHHcHHHHHHHHHHHccccccEEccccccccccccc
cHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHccccccccccccccccccccccccccEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHccccccccccccHHHcccHHHcccccccccccccccEEEEcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEcEEHHHHHHHcccHHHcccccHHHccccccEEEEEEEccEHEEEEEEHHHHHcccccccEEEEEEEccccHHHHHHHHHcccccccEEEEEEccccccccccccHHHHHHHHcccHHHEEEccccccccccccccHHHHHHHHHHHHHHHHHcHcccEEEEEcccEEEEEccHHHHcEcccccEcccHHHHHHHHHHHHHHcccccHHHHHccccccHHHHcccEEEcHHHHHHHcHHHHHHHHHHHcccccEHHcccccccEEEEEc
MKTRNLVVGMLCATVLAPILIFtstfkdsypsssesgefledltaftvggdarhlnllpqessttlslkqpiLVISdkiaqhsahsqsqsqgswehKSARVLSAttngldqsktdnpirqvtdlTKTQINKHADQEQIKASDNHISAHHSqildtkhqqessltygvlekkeptkinnekqteqttppdfrVRQLKDQLIKAKVYlslpamrnnANFVRELRLRIKEVQRAlgdatkdsdlprIANDRLKAMEQSLAKGKQIQDDCAAVVKKLRAMLHSTEEQLRVHKKQTLFLTQLTaktlpkglhclplrltteyytlnssqrhfpnqekledprlfhyaLFSDNVLAAAVVVNSTVthakhpsnhvFHIVTDRLNYAAMRMWFlanppgratvQVQNIEEFtwlnssyspvlkqlnSQSMIDYYFRAhransdsnlkfrnpkyLSILNHLRFYlpevfprlnkvlfldddvVVQKDLSglwsidlkgkvngavetcgetfhrfdrylnfsnplisknfdpracgwaygmnifdldewrrQNITDVYHTWQKMVSDVLSSWLASLpnfinyfri
MKTRNLVVGMLCATVLAPILIFTSTFKDSYPSSSESGEFLEDLTAFTVGGDARHLNLLPQESSTTLSLKQPILVISDKIAQHSAhsqsqsqgsweHKSARVLSATtngldqsktdnpirqvtDLTKTQINKHADQEQIKASDNHISAHHSqildtkhqqeSSLTYgvlekkeptkinnekqteqttppdfrvRQLKDQLIKAkvylslpamrnnANFVRELRLRIKEVQralgdatkdsdlpriANDRLKAMEQSLAKGKQIQDDCAAVVKKLRAMLHSTEEQLRVHKKQTLFLTQLtaktlpkglhclPLRLTTEYYTLNSSQRHFPNQEKLEDPRLFHYALFSDNVLAAAVVVNSTVthakhpsnhvfHIVTDRLNYAAMRMWFLANPPGRATVQVQNIEEFTWLNSSYSPVLKQLNSQSMIDYYFRAHRansdsnlkfRNPKYLSILNHLRFYLPEVFPRLNKVLFLDDDVVVQKDLSglwsidlkgkvNGAVETCGETFHRFDRYLNFSNPLISKNFDPRACGWAYGMNIFDLDEWRRQNITDVYHTWQKMVSDVLSSWLaslpnfinyfri
MKTRNLVVGMLCATVLAPILIFTSTFKDSYPSSSESGEFLEDLTAFTVGGDARHLNLLPQESSTTLSLKQPILVISDKIaqhsahsqsqsqGSWEHKSARVLSATTNGLDQSKTDNPIRQVTDLTKTQINKHADQEQIKASDNHISAHHSQILDTKHQQESSLTYGVLEKKEPTKINNEKQTEQTTPPDFRVRQLKDQLIKAKVYLSLPAMRNNANFVRELRLRIKEVQRALGDATKDSDLPRIANDRLKAMEQSLAKGKQIQDDCAAVVKKLRAMLHSTEEQLRVHKKQTLFLTQLTAKTLPKGLHCLPLRLTTEYYTLNSSQRHFPNQEKLEDPRLFHYALFSDNVLAAAVVVNSTVTHAKHPSNHVFHIVTDRLNYAAMRMWFLANPPGRATVQVQNIEEFTWLNSSYSPVLKQLNSQSMIDYYFRAHRANSDSNLKFRNPKYLSILNHLRFYLPEVFPRLNKVLFLDDDVVVQKDLSGLWSIDLKGKVNGAVETCGETFHRFDRYLNFSNPLISKNFDPRACGWAYGMNIFDLDEWRRQNITDVYHTWQKMVSDVLSSWLASLPNFINYFRI
****NLVVGMLCATVLAPILIFTSTFKD**********FLEDLTAFTVGGDARHLNLL*********LKQPILVI*********************************************************************************************************************RQLKDQLIKAKVYLSLPAMRNNANFVRELRLRIKEVQRA******************************IQDDCAAVVKKLRAMLHSTEEQLRVHKKQTLFLTQLTAKTLPKGLHCLPLRLTTEYYTLNSS*********LEDPRLFHYALFSDNVLAAAVVVNSTVTHAKHPSNHVFHIVTDRLNYAAMRMWFLANPPGRATVQVQNIEEFTWLNSSYSPVLKQLNSQSMIDYYFRAHRANSDSNLKFRNPKYLSILNHLRFYLPEVFPRLNKVLFLDDDVVVQKDLSGLWSIDLKGKVNGAVETCGETFHRFDRYLNFSNPLISKNFDPRACGWAYGMNIFDLDEWRRQNITDVYHTWQKMVSDVLSSWLASLPNFINYF**
**TRNLVVGMLCATVLAPILIFTSTFKD****************AFTVGGDAR****************************************************************************************************************************************FRVRQLKDQLIKAKVYLSLPAMRNNANFVRELR**I***************************EQSLAKGKQIQDDCAAVVKKLRAMLH**********KQTLFLTQLTAKTLPKGLHCLPLRLTTEY********************LFHYALFSDNVLAAAVVVNSTVTHAKHPSNHVFHIVTDRLNYAAMRMWFLANPPGRATVQVQNIEEFTWLNSSYSPVLKQLNSQSMIDYYFRAHRANSDSNLKFRNPKYLSILNHLRFYLPEVFPRLNKVLFLDDDVVVQKDLSGLWSIDLKGKVNGAVETCGETFHRFDRYLNFSNPLISKNFDPRACGWAYGMNIFDLDEWRRQNITDVYHTWQKMVSDVLSSWLASLPNFINYFRI
MKTRNLVVGMLCATVLAPILIFTSTFKDSYPSSSESGEFLEDLTAFTVGGDARHLNLLPQESSTTLSLKQPILVISDKI*******************ARVLSATTNGLDQSKTDNPIRQVTDLTKTQINKHADQEQIKASDNHISAHHSQILDTKHQQESSLTYGVLEKKEPTKIN********TPPDFRVRQLKDQLIKAKVYLSLPAMRNNANFVRELRLRIKEVQRALGDATKDSDLPRIANDRLKAMEQSLAKGKQIQDDCAAVVKKLRAMLHSTEEQLRVHKKQTLFLTQLTAKTLPKGLHCLPLRLTTEYYTLNSSQRHFPNQEKLEDPRLFHYALFSDNVLAAAVVVNSTVTHAKHPSNHVFHIVTDRLNYAAMRMWFLANPPGRATVQVQNIEEFTWLNSSYSPVLKQLNSQSMIDYYFRAHRANSDSNLKFRNPKYLSILNHLRFYLPEVFPRLNKVLFLDDDVVVQKDLSGLWSIDLKGKVNGAVETCGETFHRFDRYLNFSNPLISKNFDPRACGWAYGMNIFDLDEWRRQNITDVYHTWQKMVSDVLSSWLASLPNFINYFRI
MKTRNLVVGMLCATVLAPILIFTSTFKDSYPSSSESGEFLEDLTAFTV****RHLNL*PQ***TTLSLKQPI*VISDK******************************************************************************************EKKEPTKINNEKQTEQTTPPDFRVRQLKDQLIKAKVYLSLPAMRNNANFVRELRLRIKEVQRALGDATKDSDLPRIANDRLKAMEQSLAKGKQIQDDCAAVVKKLRAMLHSTEEQLRVHKKQTLFLTQLTAKTLPKGLHCLPLRLTTEYYTLNSSQRHFPNQEKLEDPRLFHYALFSDNVLAAAVVVNSTVTHAKHPSNHVFHIVTDRLNYAAMRMWFLANPPGRATVQVQNIEEFTWLNSSYSPVLKQLNSQSMIDYYFRAHRANSDSNLKFRNPKYLSILNHLRFYLPEVFPRLNKVLFLDDDVVVQKDLSGLWSIDLKGKVNGAVETCGETFHRFDRYLNFSNPLISKNFDPRACGWAYGMNIFDLDEWRRQNITDVYHTWQKMVSDVLSSWLASLPNFINYFRI
iiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MKTRNLVVGMLCATVLAPILIFTSTFKDSYPSSSESGEFLEDLTAFTVGGDARHLNLLPQESSTTLSLKQPILVISDKIAQHSAHSQSQSQGSWEHKSARVLSATTNGLDQSKTDNPIRQVTDLTKTQINKHADQEQIKASDNHISAHHSQILDTKHQQESSLTYGVLEKKEPTKINNEKQTEQTTPPDFRVRQLKDQLIKAKVYLSLPAMRNNANFxxxxxxxxxxxxxxxxxxxxxSDLPRIANDRLKAMEQSLAKGKQIQDDCAAVxxxxxxxxxxxxxxxxxxxxxTLFLTQLTAKTLPKGLHCLPLRLTTEYYTLNSSQRHFPNQEKLEDPRLFHYALFSDNVLAAAVVVNSTVTHAKHPSNHVFHIVTDRLNYAAMRMWFLANPPGRATVQVQNIEEFTWLNSSYSPVLKQLNSQSMIDYYFRAHRANSDSNLKFRNPKYLSILNHLRFYLPEVFPRLNKVLFLDDDVVVQKDLSGLWSIDLKGKVNGAVETCGETFHRFDRYLNFSNPLISKNFDPRACGWAYGMNIFDLDEWRRQNITDVYHTWQKMVSDVLSSWLASLPNFINYFRI
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query576 2.2.26 [Sep-21-2011]
Q93ZX7616 Probable galacturonosyltr yes no 0.942 0.881 0.651 0.0
Q9LE59673 Polygalacturonate 4-alpha no no 0.659 0.564 0.603 1e-144
Q0WQD2680 Probable galacturonosyltr no no 0.673 0.570 0.549 1e-125
Q8RXE1610 Probable galacturonosyltr no no 0.838 0.791 0.404 1e-107
Q9ZPZ1528 Putative galacturonosyltr no no 0.607 0.662 0.498 1e-101
Q9M9Y5589 Probable galacturonosyltr no no 0.833 0.814 0.374 1e-100
Q9LSG3559 Galacturonosyltransferase no no 0.550 0.567 0.516 2e-95
Q949Q1537 Probable galacturonosyltr no no 0.678 0.728 0.451 5e-95
Q9SKT6536 Probable galacturonosyltr no no 0.671 0.722 0.465 4e-92
Q9FWA4561 Probable galacturonosyltr no no 0.567 0.582 0.512 1e-85
>sp|Q93ZX7|GAUT4_ARATH Probable galacturonosyltransferase 4 OS=Arabidopsis thaliana GN=GAUT4 PE=2 SV=1 Back     alignment and function desciption
 Score =  735 bits (1898), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 375/576 (65%), Positives = 439/576 (76%), Gaps = 33/576 (5%)

Query: 1   MKTRNLVVGMLCATVLAPILIFTSTFKDSYPSSSESGEFLEDLTAFTVGGDARHLNLLPQ 60
           +K RNLV+  +  TV+A IL++T     S+ +     +FLED+TA T   D   LNLLP+
Sbjct: 3   VKLRNLVLFFMLLTVVAHILLYTDP-AASFKTPFSKRDFLEDVTALTFNSDENRLNLLPR 61

Query: 61  ESSTTLSLKQPILVISDKIAQHSAHSQSQSQGSWEHKSARVLSATTNGLDQSKTDNPIRQ 120
           ES   L       V SDK ++             +  SARVLSAT +    S TD  I+Q
Sbjct: 62  ESPAVLRGGLVGAVYSDKNSRR-----------LDQLSARVLSATDDDT-HSHTDISIKQ 109

Query: 121 VTDLTKTQINKHADQEQIKASDNHISAHHSQILDTKHQQESSLTYGVLEKKEPTKINNEK 180
           VT                 ASD+HI+  +  +  T+   E      V E+ EP     +K
Sbjct: 110 VT--------------HDAASDSHINRENMHVQLTQQTSEK-----VDEQPEPNAFGAKK 150

Query: 181 QTEQTTPPDFRVRQLKDQLIKAKVYLSLPAMRNNANFVRELRLRIKEVQRALGDATKDSD 240
            T     PD +VR LKDQLI+AKVYLSLP+ + NA+FVRELRLRIKEVQRAL DA+KDSD
Sbjct: 151 DTGNVLMPDAQVRHLKDQLIRAKVYLSLPSAKANAHFVRELRLRIKEVQRALADASKDSD 210

Query: 241 LPRIANDRLKAMEQSLAKGKQIQDDCAAVVKKLRAMLHSTEEQLRVHKKQTLFLTQLTAK 300
           LP+ A ++LKAMEQ+LAKGKQIQDDC+ VVKKLRAMLHS +EQLRVHKKQT+FLTQLTAK
Sbjct: 211 LPKTAIEKLKAMEQTLAKGKQIQDDCSTVVKKLRAMLHSADEQLRVHKKQTMFLTQLTAK 270

Query: 301 TLPKGLHCLPLRLTTEYYTLNSSQRHFPNQEKLEDPRLFHYALFSDNVLAAAVVVNSTVT 360
           T+PKGLHCLPLRLTT+YY LNSS++ FPNQEKLED +L+HYALFSDNVLA +VVVNST+T
Sbjct: 271 TIPKGLHCLPLRLTTDYYALNSSEQQFPNQEKLEDTQLYHYALFSDNVLATSVVVNSTIT 330

Query: 361 HAKHPSNHVFHIVTDRLNYAAMRMWFLANPPGRATVQVQNIEEFTWLNSSYSPVLKQLNS 420
           +AKHP  HVFHIVTDRLNYAAMRMWFL NPPG+AT+QVQN+EEFTWLNSSYSPVLKQL+S
Sbjct: 331 NAKHPLKHVFHIVTDRLNYAAMRMWFLDNPPGKATIQVQNVEEFTWLNSSYSPVLKQLSS 390

Query: 421 QSMIDYYFRAHRANSDSNLKFRNPKYLSILNHLRFYLPEVFPRLNKVLFLDDDVVVQKDL 480
           +SMIDYYFRAH  NSD+NLKFRNPKYLSILNHLRFYLPE+FP+L+KVLFLDDD+VVQKDL
Sbjct: 391 RSMIDYYFRAHHTNSDTNLKFRNPKYLSILNHLRFYLPEIFPKLSKVLFLDDDIVVQKDL 450

Query: 481 SGLWSIDLKGKVNGAVETCGETFHRFDRYLNFSNPLISKNFDPRACGWAYGMNIFDLDEW 540
           SGLWS+DLKG VNGAVETCGE+FHRFDRYLNFSNPLISKNFDPRACGWAYGMN+FDLDEW
Sbjct: 451 SGLWSVDLKGNVNGAVETCGESFHRFDRYLNFSNPLISKNFDPRACGWAYGMNVFDLDEW 510

Query: 541 RRQNITDVYHTWQKMVSDVLSSWLASL-PNFINYFR 575
           +RQNIT+VYH WQ +  D     L +L P  I ++R
Sbjct: 511 KRQNITEVYHRWQDLNQDRELWKLGTLPPGLITFWR 546
May be involved in pectin and/or xylans biosynthesis in cell walls.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 4EC: .EC: 1EC: .EC: -
>sp|Q9LE59|GAUT1_ARATH Polygalacturonate 4-alpha-galacturonosyltransferase OS=Arabidopsis thaliana GN=GAUT1 PE=1 SV=1 Back     alignment and function description
>sp|Q0WQD2|GAUT3_ARATH Probable galacturonosyltransferase 3 OS=Arabidopsis thaliana GN=GAUT3 PE=2 SV=2 Back     alignment and function description
>sp|Q8RXE1|GAUT5_ARATH Probable galacturonosyltransferase 5 OS=Arabidopsis thaliana GN=GAUT5 PE=2 SV=1 Back     alignment and function description
>sp|Q9ZPZ1|GAUT2_ARATH Putative galacturonosyltransferase 2 OS=Arabidopsis thaliana GN=GAUT2 PE=5 SV=1 Back     alignment and function description
>sp|Q9M9Y5|GAUT6_ARATH Probable galacturonosyltransferase 6 OS=Arabidopsis thaliana GN=GAUT6 PE=2 SV=1 Back     alignment and function description
>sp|Q9LSG3|GAUT8_ARATH Galacturonosyltransferase 8 OS=Arabidopsis thaliana GN=GAUT8 PE=1 SV=1 Back     alignment and function description
>sp|Q949Q1|GAUTB_ARATH Probable galacturonosyltransferase 11 OS=Arabidopsis thaliana GN=GAUT11 PE=2 SV=1 Back     alignment and function description
>sp|Q9SKT6|GAUTA_ARATH Probable galacturonosyltransferase 10 OS=Arabidopsis thaliana GN=GAUT10 PE=2 SV=2 Back     alignment and function description
>sp|Q9FWA4|GAUT9_ARATH Probable galacturonosyltransferase 9 OS=Arabidopsis thaliana GN=GAUT9 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query576
255568510647 Glycosyltransferase QUASIMODO1, putative 0.968 0.862 0.701 0.0
359496846 1286 PREDICTED: uncharacterized protein LOC10 0.949 0.425 0.684 0.0
296080851638 unnamed protein product [Vitis vinifera] 0.937 0.846 0.692 0.0
147766034 759 hypothetical protein VITISV_038741 [Viti 0.937 0.711 0.690 0.0
224124762665 glycosyltransferase, CAZy family GT8 [Po 0.963 0.834 0.668 0.0
356564442 1469 PREDICTED: uncharacterized protein LOC10 0.961 0.377 0.660 0.0
10177914615 unnamed protein product [Arabidopsis tha 0.942 0.882 0.651 0.0
18422837616 alpha-1,4-galacturonosyltransferase [Ara 0.942 0.881 0.651 0.0
356522095661 PREDICTED: probable galacturonosyltransf 0.967 0.842 0.634 0.0
357448171667 Galacturonosyltransferase [Medicago trun 0.989 0.854 0.627 0.0
>gi|255568510|ref|XP_002525229.1| Glycosyltransferase QUASIMODO1, putative [Ricinus communis] gi|223535526|gb|EEF37195.1| Glycosyltransferase QUASIMODO1, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  803 bits (2074), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 405/577 (70%), Positives = 470/577 (81%), Gaps = 19/577 (3%)

Query: 1   MKTRNLVVGMLCATVLAPILIFTSTFKDSYPSSSESGEFLEDLTAFTVGGDAR-HLNLLP 59
           MK RNLVVGML  TV+API+++T     ++ SSS + EFLED+ + T+ GD+R HLN+LP
Sbjct: 3   MKLRNLVVGMLLVTVIAPIILYTDNRFSTFNSSSSTTEFLEDVASLTLSGDSRDHLNVLP 62

Query: 60  QESSTTLSLKQPILVI----SDKIAQHSA----HSQSQSQGSWEHKSARVLSATTNGLDQ 111
           QES++ L  K+PI ++    S     H++    HS    Q + EHKS RVLSAT N   Q
Sbjct: 63  QESTSLL--KEPIGIVYTDNSTISPPHTSTIQFHSSPLPQDTREHKSTRVLSAT-NDQHQ 119

Query: 112 SKTDNPIRQVTDLTKTQINKHADQEQIKASDNHISAHHSQILDTKHQQESSLTYGVLEKK 171
           S+TD  IRQVT+   ++    A+ +  K + +   + ++ +      Q+SSLT   + +K
Sbjct: 120 SQTDTIIRQVTNQQASRTTD-ANNKNSKQNPSDGGSQNAVV------QQSSLTSEKVTEK 172

Query: 172 EPTKINNEKQTEQTTPPDFRVRQLKDQLIKAKVYLSLPAMRNNANFVRELRLRIKEVQRA 231
            P K   +KQT QT  PD RVRQL+DQLI+AKVYLSLP+ +NN +F RELRLRIKEVQR 
Sbjct: 173 GPPKSRTDKQTAQTPVPDARVRQLRDQLIRAKVYLSLPSTKNNPHFTRELRLRIKEVQRV 232

Query: 232 LGDATKDSDLPRIANDRLKAMEQSLAKGKQIQDDCAAVVKKLRAMLHSTEEQLRVHKKQT 291
           LGDATKDSDLP+ AND+LKAM+QSLAKGKQ+QDDCA+VVKKLRAMLHS+EEQLRVHKKQT
Sbjct: 233 LGDATKDSDLPKNANDKLKAMDQSLAKGKQVQDDCASVVKKLRAMLHSSEEQLRVHKKQT 292

Query: 292 LFLTQLTAKTLPKGLHCLPLRLTTEYYTLNSSQRHFPNQEKLEDPRLFHYALFSDNVLAA 351
           +FLTQLTAKTLPKGLHC PLRLT EYY+LNSSQ+ FPNQEKLEDP+L+HYALFSDNVLAA
Sbjct: 293 MFLTQLTAKTLPKGLHCFPLRLTNEYYSLNSSQQQFPNQEKLEDPQLYHYALFSDNVLAA 352

Query: 352 AVVVNSTVTHAKHPSNHVFHIVTDRLNYAAMRMWFLANPPGRATVQVQNIEEFTWLNSSY 411
           AVVVNST+THAK PS HVFHIVTDRLNYAAMRMWFL NPPG+AT+QVQNIEE TWLNSSY
Sbjct: 353 AVVVNSTITHAKDPSKHVFHIVTDRLNYAAMRMWFLVNPPGQATIQVQNIEELTWLNSSY 412

Query: 412 SPVLKQLNSQSMIDYYFRAHRANSDSNLKFRNPKYLSILNHLRFYLPEVFPRLNKVLFLD 471
           SPVLKQL SQSMIDYYFR HRANSDSNLK+RNPKYLSILNHLRFYLPE+FP LNKVLFLD
Sbjct: 413 SPVLKQLGSQSMIDYYFRTHRANSDSNLKYRNPKYLSILNHLRFYLPEIFPMLNKVLFLD 472

Query: 472 DDVVVQKDLSGLWSIDLKGKVNGAVETCGETFHRFDRYLNFSNPLISKNFDPRACGWAYG 531
           DD+VVQKDL+GLWS+DLKG VNGAVETCGE FHRFDRYLNFSNPLISKNFDP ACGWAYG
Sbjct: 473 DDIVVQKDLTGLWSLDLKGNVNGAVETCGERFHRFDRYLNFSNPLISKNFDPHACGWAYG 532

Query: 532 MNIFDLDEWRRQNITDVYHTWQKMVSDVLSSWLASLP 568
           MN+FDLD+W+RQNIT VYHTWQK+  D L   L +LP
Sbjct: 533 MNVFDLDQWKRQNITGVYHTWQKLNHDRLLWKLGTLP 569

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359496846|ref|XP_002272372.2| PREDICTED: uncharacterized protein LOC100258406 [Vitis vinifera] Back     alignment and taxonomy information
>gi|296080851|emb|CBI18781.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|147766034|emb|CAN70213.1| hypothetical protein VITISV_038741 [Vitis vinifera] Back     alignment and taxonomy information
>gi|224124762|ref|XP_002329942.1| glycosyltransferase, CAZy family GT8 [Populus trichocarpa] gi|222871964|gb|EEF09095.1| glycosyltransferase, CAZy family GT8 [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356564442|ref|XP_003550463.1| PREDICTED: uncharacterized protein LOC100794732 [Glycine max] Back     alignment and taxonomy information
>gi|10177914|dbj|BAB11325.1| unnamed protein product [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|18422837|ref|NP_568688.1| alpha-1,4-galacturonosyltransferase [Arabidopsis thaliana] gi|75163841|sp|Q93ZX7.1|GAUT4_ARATH RecName: Full=Probable galacturonosyltransferase 4; AltName: Full=Like glycosyl transferase 3 gi|15810327|gb|AAL07051.1| unknown protein [Arabidopsis thaliana] gi|20259235|gb|AAM14333.1| unknown protein [Arabidopsis thaliana] gi|332008188|gb|AED95571.1| alpha-1,4-galacturonosyltransferase [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|356522095|ref|XP_003529685.1| PREDICTED: probable galacturonosyltransferase 4-like [Glycine max] Back     alignment and taxonomy information
>gi|357448171|ref|XP_003594361.1| Galacturonosyltransferase [Medicago truncatula] gi|355483409|gb|AES64612.1| Galacturonosyltransferase [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query576
TAIR|locus:2160957616 GAUT4 "galacturonosyltransfera 0.784 0.733 0.721 1.6e-193
TAIR|locus:2098836673 GAUT1 "galacturonosyltransfera 0.810 0.693 0.522 4.8e-133
TAIR|locus:2121753680 GAUT3 "galacturonosyltransfera 0.814 0.689 0.477 6.4e-115
TAIR|locus:2039934528 GAUT2 "galacturonosyltransfera 0.520 0.568 0.529 2e-100
TAIR|locus:504955915610 LGT5 "los glycosyltransferase 0.548 0.518 0.422 8.7e-98
TAIR|locus:2051426536 GAUT10 "galacturonosyltransfer 0.678 0.729 0.464 3.4e-93
TAIR|locus:2074572561 GAUT9 "galacturonosyltransfera 0.590 0.606 0.501 4e-90
TAIR|locus:2027453537 GAUT11 "galacturonosyltransfer 0.704 0.756 0.447 6.5e-90
TAIR|locus:2090210559 QUA1 "QUASIMODO 1" [Arabidopsi 0.559 0.576 0.516 1.6e-88
TAIR|locus:2102082533 GAUT13 "galacturonosyltransfer 0.565 0.611 0.440 4.8e-71
TAIR|locus:2160957 GAUT4 "galacturonosyltransferase 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1756 (623.2 bits), Expect = 1.6e-193, Sum P(2) = 1.6e-193
 Identities = 336/466 (72%), Positives = 388/466 (83%)

Query:   112 SKTDNPIRQVTDLTKTQINKHADQEQIKASDNHISAHHSQILDTKHQQESSLTYGVLEKK 171
             S TD+     TD++  Q+   A      ASD+HI+  +  +  T+   E      V E+ 
Sbjct:    93 SATDDDTHSHTDISIKQVTHDA------ASDSHINRENMHVQLTQQTSEK-----VDEQP 141

Query:   172 EPTKINNEKQTEQTTPPDFRVRQLKDQLIKAKVYLSLPAMRNNANFVRELRLRIKEVQRA 231
             EP     +K T     PD +VR LKDQLI+AKVYLSLP+ + NA+FVRELRLRIKEVQRA
Sbjct:   142 EPNAFGAKKDTGNVLMPDAQVRHLKDQLIRAKVYLSLPSAKANAHFVRELRLRIKEVQRA 201

Query:   232 LGDATKDSDLPRIANDRLKAMEQSLAKGKQIQDDCAAVVKKLRAMLHSTEEQLRVHKKQT 291
             L DA+KDSDLP+ A ++LKAMEQ+LAKGKQIQDDC+ VVKKLRAMLHS +EQLRVHKKQT
Sbjct:   202 LADASKDSDLPKTAIEKLKAMEQTLAKGKQIQDDCSTVVKKLRAMLHSADEQLRVHKKQT 261

Query:   292 LFLTQLTAKTLPKGLHCLPLRLTTEYYTLNSSQRHFPNQEKLEDPRLFHYALFSDNVLAA 351
             +FLTQLTAKT+PKGLHCLPLRLTT+YY LNSS++ FPNQEKLED +L+HYALFSDNVLA 
Sbjct:   262 MFLTQLTAKTIPKGLHCLPLRLTTDYYALNSSEQQFPNQEKLEDTQLYHYALFSDNVLAT 321

Query:   352 AVVVNSTVTHAKHPSNHVFHIVTDRLNYAAMRMWFLANPPGRATVQVQNIEEFTWLNSSY 411
             +VVVNST+T+AKHP  HVFHIVTDRLNYAAMRMWFL NPPG+AT+QVQN+EEFTWLNSSY
Sbjct:   322 SVVVNSTITNAKHPLKHVFHIVTDRLNYAAMRMWFLDNPPGKATIQVQNVEEFTWLNSSY 381

Query:   412 SPVLKQLNSQSMIDYYFRAHRANSDSNLKFRNPKYLSILNHLRFYLPEVFPRLNKVLFLD 471
             SPVLKQL+S+SMIDYYFRAH  NSD+NLKFRNPKYLSILNHLRFYLPE+FP+L+KVLFLD
Sbjct:   382 SPVLKQLSSRSMIDYYFRAHHTNSDTNLKFRNPKYLSILNHLRFYLPEIFPKLSKVLFLD 441

Query:   472 DDVVVQKDLSGLWSIDLKGKVNGAVETCGETFHRFDRYLNFSNPLISKNFDPRACGWAYG 531
             DD+VVQKDLSGLWS+DLKG VNGAVETCGE+FHRFDRYLNFSNPLISKNFDPRACGWAYG
Sbjct:   442 DDIVVQKDLSGLWSVDLKGNVNGAVETCGESFHRFDRYLNFSNPLISKNFDPRACGWAYG 501

Query:   532 MNIFDLDEWRRQNITDVYHTWQKMVSDVLSSW-LASLP-NFINYFR 575
             MN+FDLDEW+RQNIT+VYH WQ +  D    W L +LP   I ++R
Sbjct:   502 MNVFDLDEWKRQNITEVYHRWQDLNQD-RELWKLGTLPPGLITFWR 546
GO:0005794 "Golgi apparatus" evidence=ISM;IDA
GO:0016051 "carbohydrate biosynthetic process" evidence=ISS
GO:0016757 "transferase activity, transferring glycosyl groups" evidence=IEA;ISS
GO:0047262 "polygalacturonate 4-alpha-galacturonosyltransferase activity" evidence=ISS
TAIR|locus:2098836 GAUT1 "galacturonosyltransferase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2121753 GAUT3 "galacturonosyltransferase 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2039934 GAUT2 "galacturonosyltransferase 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:504955915 LGT5 "los glycosyltransferase 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2051426 GAUT10 "galacturonosyltransferase 10" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2074572 GAUT9 "galacturonosyltransferase 9" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2027453 GAUT11 "galacturonosyltransferase 11" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2090210 QUA1 "QUASIMODO 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2102082 GAUT13 "galacturonosyltransferase 13" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q93ZX7GAUT4_ARATH2, ., 4, ., 1, ., -0.65100.94270.8814yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00011843001
SubName- Full=Chromosome undetermined scaffold_342, whole genome shotgun sequence; (613 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00036829001
RecName- Full=Pectinesterase; EC=3.1.1.11; (364 aa)
     •  0.899
GSVIVG00036367001
SubName- Full=Chromosome chr3 scaffold_8, whole genome shotgun sequence; (308 aa)
     •  0.899
GSVIVG00035359001
RecName- Full=Pectinesterase; EC=3.1.1.11; (299 aa)
     •  0.899
GSVIVG00033995001
RecName- Full=Pectinesterase; EC=3.1.1.11; (581 aa)
     •  0.899
GSVIVG00033942001
SubName- Full=Chromosome undetermined scaffold_71, whole genome shotgun sequence; (237 aa)
     •  0.899
GSVIVG00031642001
SubName- Full=Chromosome chr5 scaffold_58, whole genome shotgun sequence; (451 aa)
     •  0.899
GSVIVG00028034001
RecName- Full=Pectinesterase; EC=3.1.1.11; (465 aa)
     •  0.899
GSVIVG00026410001
SubName- Full=Chromosome chr15 scaffold_37, whole genome shotgun sequence; (418 aa)
     •  0.899
GSVIVG00026388001
RecName- Full=Pectinesterase; EC=3.1.1.11; (513 aa)
     •  0.899
GSVIVG00022688001
RecName- Full=Pectinesterase; EC=3.1.1.11; (477 aa)
     •  0.899

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query576
PLN02829639 PLN02829, PLN02829, Probable galacturonosyltransfe 0.0
PLN02718603 PLN02718, PLN02718, Probable galacturonosyltransfe 1e-177
PLN02910657 PLN02910, PLN02910, polygalacturonate 4-alpha-gala 1e-175
PLN02742534 PLN02742, PLN02742, Probable galacturonosyltransfe 1e-153
PLN02523559 PLN02523, PLN02523, galacturonosyltransferase 1e-132
PLN02769629 PLN02769, PLN02769, Probable galacturonosyltransfe 1e-113
PLN02870533 PLN02870, PLN02870, Probable galacturonosyltransfe 1e-98
PLN02659534 PLN02659, PLN02659, Probable galacturonosyltransfe 2e-88
PLN02867535 PLN02867, PLN02867, Probable galacturonosyltransfe 1e-85
cd06429257 cd06429, GT8_like_1, GT8_like_1 represents a subfa 9e-82
pfam01501248 pfam01501, Glyco_transf_8, Glycosyl transferase fa 4e-51
cd04194248 cd04194, GT8_A4GalT_like, A4GalT_like proteins cat 8e-15
cd00505246 cd00505, Glyco_transf_8, Members of glycosyltransf 2e-11
COG1442 325 COG1442, RfaJ, Lipopolysaccharide biosynthesis pro 1e-08
cd06432248 cd06432, GT8_HUGT1_C_like, The C-terminal domain o 0.002
>gnl|CDD|215443 PLN02829, PLN02829, Probable galacturonosyltransferase Back     alignment and domain information 
 Score =  930 bits (2406), Expect = 0.0
 Identities = 401/570 (70%), Positives = 463/570 (81%), Gaps = 13/570 (2%)

Query: 1   MKTRNLVVGMLCATVLAPILIFTSTFKDSYPSSSESGEFLEDLTAFTVGGDARHLNLLPQ 60
           M+ RNLV+G+L  TVL+PIL++T     S+ + S   +FLED+TA T+GGDA  LN+LPQ
Sbjct: 3   MRLRNLVLGLLLLTVLSPILLYTDRLSASF-TPSSKRDFLEDVTALTLGGDASKLNVLPQ 61

Query: 61  ESSTTLSLKQPI-LVISDKIAQH-SAHSQSQSQGSWEHKSARVLSATTNGLDQSKTDNPI 118
           ESS++L  K+PI +V SD  ++     SQ           ARVLSAT +    S+TD+ I
Sbjct: 62  ESSSSL--KEPIGIVYSDNSSKTIEPDSQDLLLDKRGEHKARVLSATDDD-THSQTDDII 118

Query: 119 RQVTDLTKTQINKHADQEQIKASDNHISAHHSQILDTKHQQESSLTYGVLEKKEPTKINN 178
           +QVT             +  +   N  S   SQ    +H Q+S+ T   +++KEP     
Sbjct: 119 KQVTQKA-------GQDDSDQQEKNSQSQSASQAESLEHVQQSAQTSEKVDEKEPLLTKT 171

Query: 179 EKQTEQTTPPDFRVRQLKDQLIKAKVYLSLPAMRNNANFVRELRLRIKEVQRALGDATKD 238
           +KQT+QT  PD RVRQL+DQLIKAKVYLSLPA + N +F RELRLRIKEVQR LGDA+KD
Sbjct: 172 DKQTDQTVMPDARVRQLRDQLIKAKVYLSLPATKANPHFTRELRLRIKEVQRVLGDASKD 231

Query: 239 SDLPRIANDRLKAMEQSLAKGKQIQDDCAAVVKKLRAMLHSTEEQLRVHKKQTLFLTQLT 298
           SDLP+ AN++LKAMEQ+LAKGKQ+QDDC+ VVKKLRAMLHS EEQLRVHKKQT+FLTQLT
Sbjct: 232 SDLPKNANEKLKAMEQTLAKGKQMQDDCSIVVKKLRAMLHSAEEQLRVHKKQTMFLTQLT 291

Query: 299 AKTLPKGLHCLPLRLTTEYYTLNSSQRHFPNQEKLEDPRLFHYALFSDNVLAAAVVVNST 358
           AKTLPKGLHCLPLRLTTEYY LNSS++ FPNQEKLEDP+L+HYALFSDNVLAAAVVVNST
Sbjct: 292 AKTLPKGLHCLPLRLTTEYYNLNSSEQQFPNQEKLEDPQLYHYALFSDNVLAAAVVVNST 351

Query: 359 VTHAKHPSNHVFHIVTDRLNYAAMRMWFLANPPGRATVQVQNIEEFTWLNSSYSPVLKQL 418
           VT+AKHPS HVFHIVTDRLNYAAMRMWFL NPPG+AT+QVQNIEEFTWLNSSYSPVLKQL
Sbjct: 352 VTNAKHPSKHVFHIVTDRLNYAAMRMWFLVNPPGKATIQVQNIEEFTWLNSSYSPVLKQL 411

Query: 419 NSQSMIDYYFRAHRANSDSNLKFRNPKYLSILNHLRFYLPEVFPRLNKVLFLDDDVVVQK 478
            SQSMIDYYFRAHRANSDSNLK+RNPKYLSILNHLRFYLPE+FP+LNKVLFLDDD+VVQK
Sbjct: 412 GSQSMIDYYFRAHRANSDSNLKYRNPKYLSILNHLRFYLPEIFPKLNKVLFLDDDIVVQK 471

Query: 479 DLSGLWSIDLKGKVNGAVETCGETFHRFDRYLNFSNPLISKNFDPRACGWAYGMNIFDLD 538
           DL+GLWSIDLKG VNGAVETCGE+FHRFDRYLNFSNPLISKNFDP ACGWAYGMN+FDLD
Sbjct: 472 DLTGLWSIDLKGNVNGAVETCGESFHRFDRYLNFSNPLISKNFDPHACGWAYGMNVFDLD 531

Query: 539 EWRRQNITDVYHTWQKMVSDVLSSWLASLP 568
           EW+RQNIT+VYH+WQK+  D     L +LP
Sbjct: 532 EWKRQNITEVYHSWQKLNHDRQLWKLGTLP 561

Length = 639
>gnl|CDD|178320 PLN02718, PLN02718, Probable galacturonosyltransferase Back     alignment and domain information
>gnl|CDD|215493 PLN02910, PLN02910, polygalacturonate 4-alpha-galacturonosyltransferase Back     alignment and domain information
>gnl|CDD|215395 PLN02742, PLN02742, Probable galacturonosyltransferase Back     alignment and domain information
>gnl|CDD|215286 PLN02523, PLN02523, galacturonosyltransferase Back     alignment and domain information
>gnl|CDD|215412 PLN02769, PLN02769, Probable galacturonosyltransferase Back     alignment and domain information
>gnl|CDD|215468 PLN02870, PLN02870, Probable galacturonosyltransferase Back     alignment and domain information
>gnl|CDD|215356 PLN02659, PLN02659, Probable galacturonosyltransferase Back     alignment and domain information
>gnl|CDD|178458 PLN02867, PLN02867, Probable galacturonosyltransferase Back     alignment and domain information
>gnl|CDD|133051 cd06429, GT8_like_1, GT8_like_1 represents a subfamily of GT8 with unknown function Back     alignment and domain information
>gnl|CDD|216536 pfam01501, Glyco_transf_8, Glycosyl transferase family 8 Back     alignment and domain information
>gnl|CDD|133037 cd04194, GT8_A4GalT_like, A4GalT_like proteins catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface Back     alignment and domain information
>gnl|CDD|132996 cd00505, Glyco_transf_8, Members of glycosyltransferase family 8 (GT-8) are involved in lipopolysaccharide biosynthesis and glycogen synthesis Back     alignment and domain information
>gnl|CDD|224359 COG1442, RfaJ, Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>gnl|CDD|133054 cd06432, GT8_HUGT1_C_like, The C-terminal domain of HUGT1-like is highly homologous to the GT 8 family Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 576
PLN02829639 Probable galacturonosyltransferase 100.0
PLN02718603 Probable galacturonosyltransferase 100.0
PLN02910657 polygalacturonate 4-alpha-galacturonosyltransferas 100.0
PLN02742534 Probable galacturonosyltransferase 100.0
PLN02769629 Probable galacturonosyltransferase 100.0
PLN02870533 Probable galacturonosyltransferase 100.0
PLN02867535 Probable galacturonosyltransferase 100.0
PLN02659534 Probable galacturonosyltransferase 100.0
PLN02523559 galacturonosyltransferase 100.0
cd06429257 GT8_like_1 GT8_like_1 represents a subfamily of GT 100.0
PRK15171334 lipopolysaccharide 1,3-galactosyltransferase; Prov 99.96
cd04194248 GT8_A4GalT_like A4GalT_like proteins catalyze the 99.95
cd00505246 Glyco_transf_8 Members of glycosyltransferase fami 99.95
cd06432248 GT8_HUGT1_C_like The C-terminal domain of HUGT1-li 99.93
cd06431280 GT8_LARGE_C LARGE catalytic domain has closest hom 99.93
COG1442 325 RfaJ Lipopolysaccharide biosynthesis proteins, LPS 99.92
PF01501250 Glyco_transf_8: Glycosyl transferase family 8; Int 99.92
cd06430304 GT8_like_2 GT8_like_2 represents a subfamily of GT 99.89
cd02537240 GT8_Glycogenin Glycogenin belongs the GT 8 family 99.4
PLN00176 333 galactinol synthase 99.28
cd06914 278 GT8_GNT1 GNT1 is a fungal enzyme that belongs to t 98.98
KOG18791470 consensus UDP-glucose:glycoprotein glucosyltransfe 98.73
COG5597368 Alpha-N-acetylglucosamine transferase [Cell envelo 95.67
>PLN02829 Probable galacturonosyltransferase Back     alignment and domain information 
Probab=100.00  E-value=1.6e-154  Score=1253.72  Aligned_cols=563  Identities=72%  Similarity=1.092  Sum_probs=538.2

Q ss_pred             CchhhHHHHHHHHHhhhheeeeeccccccCCCCcccchhhhhhhhccccCCCccccccccCccccccccCCe-EEEeccc
Q 008157            1 MKTRNLVVGMLCATVLAPILIFTSTFKDSYPSSSESGEFLEDLTAFTVGGDARHLNLLPQESSTTLSLKQPI-LVISDKI   79 (576)
Q Consensus         1 ~~~r~~~~~~~~~~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~   79 (576)
                      |+.|++||+|||+||+|||+|||+||++.| ||++++||+|||+++++++|+.+||+||||+++  +||||+ |||+|++
T Consensus         3 ~~~r~~~~~~l~~~v~~p~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~lk~p~~~~~~~~~   79 (639)
T PLN02829          3 MRLRNLVLGLLLLTVLSPILLYTDRLSASF-TPSSKRDFLEDVTALTLGGDASKLNVLPQESSS--SLKEPIGIVYSDNS   79 (639)
T ss_pred             HHHHHHHHHHHHHHHhhceeEEeccccccc-CCcchhhhhHHHHhhccCccchhcccccccccc--cccCceeEEeeccc
Confidence            678999999999999999999999999966 999999999999999999999999999999999  999999 9999998


Q ss_pred             ccc--cccccccccCcccccccceeccccCCCCCccCCCcccccccchhhhhcccchhhhhhhccccccccccccccccc
Q 008157           80 AQH--SAHSQSQSQGSWEHKSARVLSATTNGLDQSKTDNPIRQVTDLTKTQINKHADQEQIKASDNHISAHHSQILDTKH  157 (576)
Q Consensus        80 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (576)
                      ++.  ...++++++|.+||| +|+||++ +|+++|++|++|+|||+...+..+.+.+       +++.+++.++......
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~  150 (639)
T PLN02829         80 SKTIEPDSQDLLLDKRGEHK-ARVLSAT-DDDTHSQTDDIIKQVTQKAGQDDSDQQE-------KNSQSQSASQAESLEH  150 (639)
T ss_pred             cccccccccccccccccchh-hhhcccc-ccccccccchhHHHhhhccccccccccc-------ccccccccccccchhh
Confidence            774  346799999999999 8999997 5669999999999999875444433332       2566666778888999


Q ss_pred             cccccccccccccCCccccccccccCCCCCchhHHHhhhhHHHHHHhhccccccCCchHHHHHHHHHHHHHHHhhccCCC
Q 008157          158 QQESSLTYGVLEKKEPTKINNEKQTEQTTPPDFRVRQLKDQLIKAKVYLSLPAMRNNANFVRELRLRIKEVQRALGDATK  237 (576)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~dql~~a~~Y~~~a~~~~~~~l~~el~~~i~e~~~~l~~a~~  237 (576)
                      .|++.+++++.++++|..++++|+++.++|+|++||+|||||||||||++|||++||++|+||||++|||+||+||+|+.
T Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~lkDql~~AkaY~~iak~~~~~~l~~el~~~i~e~~r~l~~a~~  230 (639)
T PLN02829        151 VQQSAQTSEKVDEKEPLLTKTDKQTDQTVMPDARVRQLRDQLIKAKVYLSLPATKANPHFTRELRLRIKEVQRVLGDASK  230 (639)
T ss_pred             hhhhhccccccccccccccccccccccccCchHHHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHhhccC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCChhHHHHHHHHHHHHHhhccCCcChHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhccCCCcccccccccchhh
Q 008157          238 DSDLPRIANDRLKAMEQSLAKGKQIQDDCAAVVKKLRAMLHSTEEQLRVHKKQTLFLTQLTAKTLPKGLHCLPLRLTTEY  317 (576)
Q Consensus       238 d~~l~~~~~~~~~~m~~~i~~ak~~~~d~~~~~~klr~~l~~~ee~~~~~~~q~~~~~~laa~~~PK~lhcL~~rla~ey  317 (576)
                      |+|||+++.++|++|+++|++||+++|||+++++|||+|++++||++++||+|++|++||||+|+|||||||+||||.||
T Consensus       231 d~~lp~~~~~~~~~m~~~i~~ak~~~~d~~~~~~KLr~~l~~~Ee~~~~~~~q~~~l~~laa~t~PK~lHCL~mrLt~Ey  310 (639)
T PLN02829        231 DSDLPKNANEKLKAMEQTLAKGKQMQDDCSIVVKKLRAMLHSAEEQLRVHKKQTMFLTQLTAKTLPKGLHCLPLRLTTEY  310 (639)
T ss_pred             CCCCChhHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCccccchhhHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCCccCCCCCCCcCCCCCCceEEEEEeccccccccchhhhhcccCCCCceEEEEEeCCCCHHHHHHHHhhCCCCCceeE
Q 008157          318 YTLNSSQRHFPNQEKLEDPRLFHYALFSDNVLAAAVVVNSTVTHAKHPSNHVFHIVTDRLNYAAMRMWFLANPPGRATVQ  397 (576)
Q Consensus       318 ~~~~~~~~~~p~~~~l~dp~~iHIa~~sDNvlaasVvInSiv~N~~~Pe~ivFHIVTD~~s~~amk~WF~~n~~~~a~Ie  397 (576)
                      |.+++.++++|++++|+||+++|||++|||++|++|||||++.|+++|+++|||||||++||++|++||++||+++|+|+
T Consensus       311 ~~~~~~~~~~p~~~~l~dp~l~Hy~ifSdNVLAasVVVnStv~na~~p~k~VFHivTD~~ny~aM~~WF~~n~~~~A~v~  390 (639)
T PLN02829        311 YNLNSSEQQFPNQEKLEDPQLYHYALFSDNVLAAAVVVNSTVTNAKHPSKHVFHIVTDRLNYAAMRMWFLVNPPGKATIQ  390 (639)
T ss_pred             HhCChhhccCCChhhccCCccceEEEEecceeEEEeeeehhhhcccCccceEEEEecCccchHHHHHHHhhCCCccceEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeehhhhhhcccccchhhhhhccccceEEEecccccCCccccccCCCCcchhhhhhhhhhhcccCCCCeEEEEecceeee
Q 008157          398 VQNIEEFTWLNSSYSPVLKQLNSQSMIDYYFRAHRANSDSNLKFRNPKYLSILNHLRFYLPEVFPRLNKVLFLDDDVVVQ  477 (576)
Q Consensus       398 V~nie~F~wL~~~y~PvLkql~~~~~~~y~F~~~~~~s~~~~k~r~p~y~S~~~y~Rf~LPeLlP~ldKVLYLD~DvIV~  477 (576)
                      |+++|+|+||+.+|+|+++||+++.+++|||+.+..++..++++|+|+|+|.++|+|||||++||+++||||||+|+||+
T Consensus       391 V~nie~f~wln~~~~pvl~ql~~~~~~~~yf~~~~~~~~~~~k~r~p~ylS~lnY~RfyLPeLLP~LdKVLYLD~DVVVq  470 (639)
T PLN02829        391 VQNIEEFTWLNSSYSPVLKQLGSQSMIDYYFRAHRANSDSNLKYRNPKYLSILNHLRFYLPEIFPKLNKVLFLDDDIVVQ  470 (639)
T ss_pred             EEehhhcccccccccHHHHHhhhhhhhhhhhhccccCcccccccCCcchhhHHHHHHHHHHHHhcccCeEEEEeCCEEeC
Confidence            99999999999999999999999999999998877777788999999999999999999999999999999999999999


Q ss_pred             cCchHHhccCCCCCeeEEeecccccccccccccccCChhhhcCCCCCCCceeechhhccHHHHHhhCHHHHHHHHHHHcc
Q 008157          478 KDLSGLWSIDLKGKVNGAVETCGETFHRFDRYLNFSNPLISKNFDPRACGWAYGMNIFDLDEWRRQNITDVYHTWQKMVS  557 (576)
Q Consensus       478 ~DLseLw~iDL~gkviAAVedc~~~f~ry~~yLn~SnP~i~~~f~~~~cYFNSGVmLiDL~kWRk~nit~k~~~w~kln~  557 (576)
                      +||++||++||+|+++|||+||+..|++|..+++|++|.+...|+++.||||+|||||||++||++++|++|+.|+++|.
T Consensus       471 gDLseLw~iDL~gkviAAVedc~~~f~r~~~~l~fs~p~i~~~Fn~~~CyFNSGVmVINL~~WRe~nITe~y~~wm~~n~  550 (639)
T PLN02829        471 KDLTGLWSIDLKGNVNGAVETCGESFHRFDRYLNFSNPLISKNFDPHACGWAYGMNVFDLDEWKRQNITEVYHSWQKLNH  550 (639)
T ss_pred             CChHHHHhCCCCCceEEEeccchhhhhhhhhhhhccchHhhhccCCcccceecceEEEeHHHHHHhChHHHHHHHHHHcc
Confidence            99999999999999999999999888999999999999998899999999999999999999999999999999999999


Q ss_pred             CcccccccccCCcccccc
Q 008157          558 DVLSSWLASLPNFINYFR  575 (576)
Q Consensus       558 d~~LwklGsLPp~Ll~F~  575 (576)
                      ++.+|++|+|||+||+|+
T Consensus       551 ~r~L~dlgaLPp~Ll~F~  568 (639)
T PLN02829        551 DRQLWKLGTLPPGLITFW  568 (639)
T ss_pred             CCccccccCCChHHHHhc
Confidence            999999999999999996

>PLN02718 Probable galacturonosyltransferase Back     alignment and domain information
>PLN02910 polygalacturonate 4-alpha-galacturonosyltransferase Back     alignment and domain information
>PLN02742 Probable galacturonosyltransferase Back     alignment and domain information
>PLN02769 Probable galacturonosyltransferase Back     alignment and domain information
>PLN02870 Probable galacturonosyltransferase Back     alignment and domain information
>PLN02867 Probable galacturonosyltransferase Back     alignment and domain information
>PLN02659 Probable galacturonosyltransferase Back     alignment and domain information
>PLN02523 galacturonosyltransferase Back     alignment and domain information
>cd06429 GT8_like_1 GT8_like_1 represents a subfamily of GT8 with unknown function Back     alignment and domain information
>PRK15171 lipopolysaccharide 1,3-galactosyltransferase; Provisional Back     alignment and domain information
>cd04194 GT8_A4GalT_like A4GalT_like proteins catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface Back     alignment and domain information
>cd00505 Glyco_transf_8 Members of glycosyltransferase family 8 (GT-8) are involved in lipopolysaccharide biosynthesis and glycogen synthesis Back     alignment and domain information
>cd06432 GT8_HUGT1_C_like The C-terminal domain of HUGT1-like is highly homologous to the GT 8 family Back     alignment and domain information
>cd06431 GT8_LARGE_C LARGE catalytic domain has closest homology to GT8 glycosyltransferase involved in lipooligosaccharide synthesis Back     alignment and domain information
>COG1442 RfaJ Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PF01501 Glyco_transf_8: Glycosyl transferase family 8; InterPro: IPR002495 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases Back     alignment and domain information
>cd06430 GT8_like_2 GT8_like_2 represents a subfamily of GT8 with unknown function Back     alignment and domain information
>cd02537 GT8_Glycogenin Glycogenin belongs the GT 8 family and initiates the biosynthesis of glycogen Back     alignment and domain information
>PLN00176 galactinol synthase Back     alignment and domain information
>cd06914 GT8_GNT1 GNT1 is a fungal enzyme that belongs to the GT 8 family Back     alignment and domain information
>KOG1879 consensus UDP-glucose:glycoprotein glucosyltransferase [Carbohydrate transport and metabolism] Back     alignment and domain information
>COG5597 Alpha-N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query576
1ss9_A 311 Crystal Structural Analysis Of Active Site Mutant Q 2e-04
>pdb|1SS9|A Chain A, Crystal Structural Analysis Of Active Site Mutant Q189e Of Lgtc Length = 311 Back     alignment and structure 
Iteration: 1

 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/121 (29%), Positives = 57/121 (47%), Gaps = 14/121 (11%)
Query: 443 NPKYLSILNHLRFYLPEVFPRLNKVLFLDDDVVVQKDLSGLWSIDLKGKVNGAVETCGET 502
           N +++SI  + R  L E     +KVL+LD DV+V+  L+ LW  DL     GA   C + 
Sbjct: 75  NIRHISITTYARLKLGEYIADCDKVLYLDIDVLVRDSLTPLWDTDLGDNWLGA---CIDL 131
Query: 503 FHRFDRYLNFSNPLISKNFDPRACGWAY---GMNIFDLDEWRRQNITDVYHTWQKMVSDV 559
           F   +R   +   +        A G  Y   G+ + +L +WRR +I  +   W +   DV
Sbjct: 132 F--VERQEGYKQKI------GMADGEYYFNAGVLLINLKKWRRHDIFKMSCEWVEQYKDV 183
Query: 560 L 560
           +
Sbjct: 184 M 184

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query576
1g9r_A 311 Glycosyl transferase; alpha-beta structure; HET: U 2e-38
3tzt_A276 Glycosyl transferase family 8; structural genomics 3e-14
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-12
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-11
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-06
>1g9r_A Glycosyl transferase; alpha-beta structure; HET: UPF; 2.00A {Neisseria meningitidis} SCOP: c.68.1.4 PDB: 1ga8_A* 1ss9_A* Length = 311 Back     alignment and structure
 Score =  142 bits (360), Expect = 2e-38
 Identities = 39/235 (16%), Positives = 77/235 (32%), Gaps = 44/235 (18%)

Query: 340 HYALFSDN--VLAAAVVVNSTVTHAKHPSNHVFHIVTDRLNYAAMRMWFLANPPGRATVQ 397
                +D+       V   S        +   FH++   ++ A           G   ++
Sbjct: 2   DIVFAADDNYAAYLCVAAKSVEAAHP-DTEIRFHVLDAGISEANRAAVAANLRGGGGNIR 60

Query: 398 VQNIEEFTWLNSSYSPVLKQLNSQSMIDYYFRAHRANSDSNLKFRNPKYLSILNHLRFYL 457
             ++    +                                    N +++SI  + R  L
Sbjct: 61  FIDVNPEDFAGFPL-------------------------------NIRHISITTYARLKL 89

Query: 458 PEVFPRLNKVLFLDDDVVVQKDLSGLWSIDLKGKVNGAV-ETCGETFHRFDRYLNFSNPL 516
            E     +KVL+LD DV+V+  L+ LW  DL     GA  +   E    + + +  ++  
Sbjct: 90  GEYIADCDKVLYLDIDVLVRDSLTPLWDTDLGDNWLGASIDLFVERQEGYKQKIGMADG- 148

Query: 517 ISKNFDPRACGWAYGMNIFDLDEWRRQNITDVYHTWQKMVSDVLSSWLASLPNFI 571
                      +  G+ + +L +WRR +I  +   W +   DV+      + N +
Sbjct: 149 --------EYYFNAGVLLINLKKWRRHDIFKMSSEWVEQYKDVMQYQDQDILNGL 195
>3tzt_A Glycosyl transferase family 8; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, putative glycosyl transferase; HET: MSE CIT; 2.10A {Anaerococcus prevotii} Length = 276 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query576
3tzt_A276 Glycosyl transferase family 8; structural genomics 99.96
1g9r_A311 Glycosyl transferase; alpha-beta structure; HET: U 99.96
1ll2_A 333 Glycogenin-1; protein-substrate complex, beta-alph 99.54
3u2u_A263 Glycogenin-1, GN-1, GN1; structural genomics, stru 99.33
>3tzt_A Glycosyl transferase family 8; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, putative glycosyl transferase; HET: MSE CIT; 2.10A {Anaerococcus prevotii} SCOP: c.68.1.0 Back     alignment and structure
Probab=99.96  E-value=1.8e-30  Score=261.98  Aligned_cols=177  Identities=14%  Similarity=0.093  Sum_probs=122.4

Q ss_pred             ceEEEEEecc-c-cccccchhhhhcccCCCCceEEEEEeCCCCHHHH---HHHHhhCCCCCceeEEeehhhhhhcccccc
Q 008157          338 LFHYALFSDN-V-LAAAVVVNSTVTHAKHPSNHVFHIVTDRLNYAAM---RMWFLANPPGRATVQVQNIEEFTWLNSSYS  412 (576)
Q Consensus       338 ~iHIa~~sDN-v-laasVvInSiv~N~~~Pe~ivFHIVTD~~s~~am---k~WF~~n~~~~a~IeV~nie~F~wL~~~y~  412 (576)
                      .+|||+++|+ + .+++|+|+|++.|+++ ++++|||++++++.+..   +.++..   .+..+++..+.          
T Consensus         5 ~i~I~~~~d~~Y~~~~~v~i~Sl~~~~~~-~~~~~~il~~~is~~~~~~L~~~~~~---~~~~i~~~~~~----------   70 (276)
T 3tzt_A            5 ADALLLTLDENYIPQMKVLMTSIYINNPG-RIFDVYLIHSRISEDKLKDLGEDLKK---FSYTLYPIRAT----------   70 (276)
T ss_dssp             CEEEEEECCGGGHHHHHHHHHHHHHHSTT-CCEEEEEEESCCCHHHHHHHHHHHHT---TTCEEEEEECC----------
T ss_pred             eEEEEEEeCHhHHHHHHHHHHHHHHhCCC-CceEEEEEeCCCCHHHHHHHHHHHHH---cCCEEEEEEeC----------
Confidence            5899999995 5 6899999999999986 57999999999987643   333321   12233332221          


Q ss_pred             hhhhhhccccceEEEecccccCCccccccCCCCcchhhhhhhhhhhcccCC-CCeEEEEecceeeecCchHHhccCCCCC
Q 008157          413 PVLKQLNSQSMIDYYFRAHRANSDSNLKFRNPKYLSILNHLRFYLPEVFPR-LNKVLFLDDDVVVQKDLSGLWSIDLKGK  491 (576)
Q Consensus       413 PvLkql~~~~~~~y~F~~~~~~s~~~~k~r~p~y~S~~~y~Rf~LPeLlP~-ldKVLYLD~DvIV~~DLseLw~iDL~gk  491 (576)
                                       ...+..     .....+++..+|+||++|+++|. ++||||||+|+||++||++||++|++|+
T Consensus        71 -----------------~~~~~~-----~~~~~~~s~~~~~rl~~~~l~p~~~~kvlylD~D~iv~~di~~L~~~dl~~~  128 (276)
T 3tzt_A           71 -----------------DDLFSF-----AKVTDRYPKEMYYRLLAGEFLPENLGEILYLDPDMLVINPLDDLLRTDISDY  128 (276)
T ss_dssp             -----------------------------------CHHHHHHHTHHHHSCTTCCEEEEECSSEEECSCSHHHHTCCCTTS
T ss_pred             -----------------HHHHhc-----CccccccCHHHHHHHHHHHHcccccCeEEEEeCCeeecCCHHHHhhcCCCCC
Confidence                             100000     01124678999999999999995 9999999999999999999999999999


Q ss_pred             eeEEeeccccc-ccccccccccCChhhhcCCCCCCCceeechhhccHHHHHhhCHHHHHHHHHHHccCc
Q 008157          492 VNGAVETCGET-FHRFDRYLNFSNPLISKNFDPRACGWAYGMNIFDLDEWRRQNITDVYHTWQKMVSDV  559 (576)
Q Consensus       492 viAAVedc~~~-f~ry~~yLn~SnP~i~~~f~~~~cYFNSGVmLiDL~kWRk~nit~k~~~w~kln~d~  559 (576)
                      ++|||+||+.. +.++..         ..++....||||||||||||++||+.++++++++|++.+..+
T Consensus       129 ~~aav~d~~~~~~~~~~~---------~~~l~~~~~yfNsGV~linl~~~R~~~~~~~~~~~~~~~~~~  188 (276)
T 3tzt_A          129 ILAAASHTGKTDMANNVN---------RIRLGTDTDYYNSGLLLINLKRAREEIDPDEIFSFVEDNHMN  188 (276)
T ss_dssp             SEEEEEC-----------------------------CEEEEEEEEEHHHHHHHCCHHHHHHHHHHC---
T ss_pred             eEEEEEecccchHHHHHH---------HhcCCCCCCeEEeeEEEEEHHHHHhhhHHHHHHHHHHhcccc
Confidence            99999999743 111111         123444469999999999999999999999999999887643
>1g9r_A Glycosyl transferase; alpha-beta structure; HET: UPF; 2.00A {Neisseria meningitidis} SCOP: c.68.1.4 PDB: 1ga8_A* 1ss9_A* Back     alignment and structure
>1ll2_A Glycogenin-1; protein-substrate complex, beta-alpha-beta rossman-like NUCL binding fold, DXD motif, non-proline CIS peptide bond, TRAN; HET: UPG; 1.90A {Oryctolagus cuniculus} SCOP: c.68.1.14 PDB: 1ll3_A 1ll0_A 1zcv_A 1zcu_A 1zdf_A* 1zcy_A 1zdg_A* Back     alignment and structure
>3u2u_A Glycogenin-1, GN-1, GN1; structural genomics, structural genomics consortium, SGC, transferase, glycosyltransferase, glycogen biosynthesis; HET: GLC UDP; 1.45A {Homo sapiens} SCOP: c.68.1.14 PDB: 3t7n_A* 3t7o_A* 3t7m_A* 3u2v_A* 3u2x_A* 3u2t_A 3rmv_A* 3rmw_A* 3u2w_A* 3qvb_A* 3q4s_A* 1zct_A* 3v8y_A 3v8z_A* 3usr_A 3v90_A 3v91_A* 3usq_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 576
d1ga8a_282 c.68.1.4 (A:) Galactosyltransferase LgtC {Neisseri 4e-15
>d1ga8a_ c.68.1.4 (A:) Galactosyltransferase LgtC {Neisseria meningitidis [TaxId: 487]} Length = 282 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Galactosyltransferase LgtC
domain: Galactosyltransferase LgtC
species: Neisseria meningitidis [TaxId: 487]

 Score = 73.8 bits (180), Expect = 4e-15
 Identities = 43/234 (18%), Positives = 80/234 (34%), Gaps = 41/234 (17%)

Query: 344 FSDNVLAAAVVVNSTVTHAKHPSNHVFHIVTDRLNYAAMRMWFLANPPGRATVQVQNIEE 403
             DN  A   V   +V  A   +   FH++   ++ A           G   ++  ++  
Sbjct: 7   ADDNYAAYLCVAAKSVEAAHPDTEIRFHVLDAGISEANRAAVAANLRGGGGNIRFIDVNP 66

Query: 404 FTWLNSSYSPVLKQLNSQSMIDYYFRAHRANSDSNLKFRNPKYLSILNHLRFYLPEVFPR 463
             +                                    N +++SI  + R  L E    
Sbjct: 67  EDFAG-------------------------------FPLNIRHISITTYARLKLGEYIAD 95

Query: 464 LNKVLFLDDDVVVQKDLSGLWSIDLKGKVNGAV-ETCGETFHRFDRYLNFSNPLISKNFD 522
            +KVL+LD DV+V+  L+ LW  DL     GA  +   E    + + +  ++     N  
Sbjct: 96  CDKVLYLDIDVLVRDSLTPLWDTDLGDNWLGASIDLFVERQEGYKQKIGMADGEYYFN-- 153

Query: 523 PRACGWAYGMNIFDLDEWRRQNITDVYHTWQKMVSDVLSSWLASLPNFINYFRI 576
                   G+ + +L +WRR +I  +   W +   DV+      + N +    +
Sbjct: 154 -------AGVLLINLKKWRRHDIFKMSSEWVEQYKDVMQYQDQDILNGLFKGGV 200

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query576
d1ga8a_282 Galactosyltransferase LgtC {Neisseria meningitidis 99.96
d1ll2a_263 Glycogenin {Rabbit (Oryctolagus cuniculus) [TaxId: 99.61
>d1ga8a_ c.68.1.4 (A:) Galactosyltransferase LgtC {Neisseria meningitidis [TaxId: 487]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Galactosyltransferase LgtC
domain: Galactosyltransferase LgtC
species: Neisseria meningitidis [TaxId: 487]

Probab=99.96  E-value=2.3e-29  Score=248.38  Aligned_cols=195  Identities=19%  Similarity=0.288  Sum_probs=142.9

Q ss_pred             eEEEEEecc-c-cccccchhhhhcccCCCCceEEEEEeCCCCHHHHHHHHhhCCCCCceeEEeehhhhhhcccccchhhh
Q 008157          339 FHYALFSDN-V-LAAAVVVNSTVTHAKHPSNHVFHIVTDRLNYAAMRMWFLANPPGRATVQVQNIEEFTWLNSSYSPVLK  416 (576)
Q Consensus       339 iHIa~~sDN-v-laasVvInSiv~N~~~Pe~ivFHIVTD~~s~~amk~WF~~n~~~~a~IeV~nie~F~wL~~~y~PvLk  416 (576)
                      +|||+++|. + .+++|+|+|++.|+++ .+++|||++++++.+..+.....-...+..+.+..+               
T Consensus         1 mnIv~~~D~nY~~~~~~~i~SL~~~~~~-~~~~~~il~~~~~~~~~~~l~~~~~~~~~~i~~~~~---------------   64 (282)
T d1ga8a_           1 MDIVFAADDNYAAYLCVAAKSVEAAHPD-TEIRFHVLDAGISEANRAAVAANLRGGGGNIRFIDV---------------   64 (282)
T ss_dssp             CEEEEEECGGGHHHHHHHHHHHHHHCTT-SCCEEEEEESSCCHHHHHHHHHTSGGGTTTEEEEEC---------------
T ss_pred             CEEEEECCHHHHHHHHHHHHHHHHHCcC-CCEEEEEEcCCCCHHHHHHHHHHHHHcCCeEEEEEC---------------
Confidence            699999995 5 5899999999998876 579999999999977644322211111222222211               


Q ss_pred             hhccccceEEEecccccCCccccccCCCCcchhhhhhhhhhhcccCCCCeEEEEecceeeecCchHHhccCCCCCeeEEe
Q 008157          417 QLNSQSMIDYYFRAHRANSDSNLKFRNPKYLSILNHLRFYLPEVFPRLNKVLFLDDDVVVQKDLSGLWSIDLKGKVNGAV  496 (576)
Q Consensus       417 ql~~~~~~~y~F~~~~~~s~~~~k~r~p~y~S~~~y~Rf~LPeLlP~ldKVLYLD~DvIV~~DLseLw~iDL~gkviAAV  496 (576)
                                  +......   .. ...++++.++|+||++|++||+++||||||+|+||.+||++||++|++++.+|||
T Consensus        65 ------------~~~~~~~---~~-~~~~~~s~~~y~Rl~l~~~lp~~~kiiyLD~D~iv~~dl~~L~~~~~~~~~~aa~  128 (282)
T d1ga8a_          65 ------------NPEDFAG---FP-LNIRHISITTYARLKLGEYIADCDKVLYLDIDVLVRDSLTPLWDTDLGDNWLGAS  128 (282)
T ss_dssp             ------------CGGGGTT---SC-CCCTTCCGGGGGGGGHHHHCCSCSCEEEECSSEEECSCCHHHHTCCCTTCSEEEE
T ss_pred             ------------CchHhcc---cc-ccccccCHHHHHHHHHhhhCCccceEEEecCCEEEecchHHHHhcccccceeeee
Confidence                        1111000   00 1135778999999999999999999999999999999999999999999999999


Q ss_pred             ecccccc-cccccccccCChhhhcCCCCCCCceeechhhccHHHHHhhCHHHHHHHHHHHccCccc-cc-----------
Q 008157          497 ETCGETF-HRFDRYLNFSNPLISKNFDPRACGWAYGMNIFDLDEWRRQNITDVYHTWQKMVSDVLS-SW-----------  563 (576)
Q Consensus       497 edc~~~f-~ry~~yLn~SnP~i~~~f~~~~cYFNSGVmLiDL~kWRk~nit~k~~~w~kln~d~~L-wk-----------  563 (576)
                      .|+.... ..+..         ..++.+..+||||||||||+++||+.++++++.+|++.+..... ++           
T Consensus       129 ~d~~~~~~~~~~~---------~~~~~~~~~yfNsGVml~n~~~~r~~~~~~~~~~~~~~~~~~~~~~DQd~LN~~f~~~  199 (282)
T d1ga8a_         129 IDLFVERQEGYKQ---------KIGMADGEYYFNAGVLLINLKKWRRHDIFKMSSEWVEQYKDVMQYQDQDILNGLFKGG  199 (282)
T ss_dssp             ECHHHHTSTTHHH---------HTTCCTTSCCEEEEEEEECHHHHTTSCHHHHHHHHHHHHTTTCSSTHHHHHHHHHTTS
T ss_pred             hhhhhhhhhhhHH---------HhCCCCCCceeecceeeechhhhhhhhHHHHHHHHHHhcccCcccCchhHHHHHhcCC
Confidence            9975321 11111         12445578999999999999999999999999999988765432 22           


Q ss_pred             ccccCCccccc
Q 008157          564 LASLPNFINYF  574 (576)
Q Consensus       564 lGsLPp~Ll~F  574 (576)
                      ...||+.|+++
T Consensus       200 ~~~L~~~~N~~  210 (282)
T d1ga8a_         200 VCYANSRFNFM  210 (282)
T ss_dssp             EEEECGGGSBC
T ss_pred             EEeCCHHHeec
Confidence            45688888764
>d1ll2a_ c.68.1.14 (A:) Glycogenin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Back     information, alignment and structure