Citrus Sinensis ID: 008159

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-----

MLLLFCRWQLKYLRVATRFGLLAEACLALLLLPILRGLSLFRLLGIQFEASVRYHIWLGTAMIFFATIHGGSTLFVWGVSHHIQDEMWRWQKTGRIYLAGEIALVTGLVMWITSLPQIRRKKFEFFYYTHHLYIIFLIFFLFHAGDRHFYMVFGGIFLFGLDKLLRFIQSRPETCILSARVFPSKAIELILPKHAGLKFTPTSVIFMKIPSISKFQWHSFSITSSSSVDDQTMSLIVKCDGEWTSSLYQMIHAELDSDADQMRCIPVAIEGPYGPATMDFLRYDSLLLVAGGIGITPFLSILQEIASAQSNRKYRFPSKVQLIYVIKSSQEICLLNSISPLLSNQQSKKWHLTLKVFVTQEEQSSVTVREVLNDLSLVRAVRFGTQSNYAVNGLESLIWMAALVGITSILFVIFLISLNHIFVPVEKKLPSEKLAAPSEKVVSKEKTPSWVADLIILSSFIIAITGSTLMAILLRWRRLKKQTPPVSLNQGKAVQVLGPIEEEHEINFGGRPNFEEIFSELEKETAGSDIGVLVCGPESMKESVAKTSQRKSQCFMMNANKDKPYFNFHSLNFTF

cEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHccccccHHHHHHHHHHHHHHHHccHHHHHHccHHHHHHHHHHHHHHHHHHHHccccEEHHHHHHHHHHHHHHHHHHHHccccEEEEEEEEEcccEEEEEEEcccccccccccEEEEEcccccccccccccccccccccccEEEEEEEEcccHHHHHHHHHHHccccccccccEEEEEEEccccccccccccccEEEEEEccccHHHHHHHHHHHHHHHcccccccccEEEEEEEEccccHHHHHHHHHHHHHHccccccEEEEEEEEEccccccHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcEEEEccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccEEEEEcccccHHHHHHHHHHHccccEEEEEEEccHHHHHHHHHHHHHHHHHHHcccccccccEEEEEccccc

cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccEEHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHcccccHHHHHHHHHHHHHHHHHcHHHHHHHcHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEEEEEccccEEEEEEEcccccEEcccEEEEEEccccccccccccEEEccccccccEEEEEEEEccHHHHHHHHHHccccccccccccccEEEEEcccccccHHHHcccEEEEEEEHHHHHHHHHHHHHHHHHHccccccccccEEEEEEEcccccHHHHHHHcccccccccccccEEEEEEEEcccccHHHHccccHHHHHHccccccccccEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccEEEEcccEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHccccccccccccEccEEEccccccHHHHHHHHHHHcccccEEEEEEccHHHHHHHHHHHHHcccccccccccccccccEEEEEccc

MLLLFCRWQLKYLRVATRFGLLAEACLALLLLPILRGLSLFRLLGIQFEASVRYHIWLGTAMIFFATIHGGSTLFVWGVSHHIQDEMWRWQKTGRIYLAGEIALVTGLVMWITSLPQIRRKKFEFFYYTHHLYIIFLIFFLFHAGDRHFYMVFGGIFLFGLDKLLRFIQSRPETCILSARVFPSKAIElilpkhaglkftptsvifmkipsiskfqwhsfsitssssvddqTMSLIVKCDGEWTSSLYQMIHAEldsdadqmrcipvaiegpygpatmdFLRYDSLLLVAGGIGITPFLSILQEIASAQsnrkyrfpskVQLIYVIKSSQEICLLNsispllsnqqskkWHLTLKVFVTQEEQSSVTVREVLNDLSLVRAVrfgtqsnyavNGLESLIWMAALVGITSILFVIFLISLNHifvpvekklpseklaapsekvvskektpswVADLIILSSFIIAITGSTLMAILLRWRRlkkqtppvslnqgkavqvlgpieeeheinfggrpnfEEIFSELEketagsdigvlvcgpesmkesVAKTSQRKSQCFMmnankdkpyfnfhslnftf

MLLLFCRWQLKYLRVATRFGLLAEACLALLLLPILRGLSLFRLLGIQFEASVRYHIWLGTAMIFFATIHGGSTLFVWGVSHHIQDEMWRWQKTGRIYLAGEIALVTGLVMWITSLPQIRRKKFEFFYYTHHLYIIFLIFFLFHAGDRHFYMVFGGIFLFGLDKLLRFIQSRPETCILSARVFPSKAIELILPKHAGLKFTPTSVIFMKIPSISKFQWHSFSITssssvddqTMSLIVKCDGEWTSSLYQMIHAELDSDADQMRCIPVAIEGPYGPATMDFLRYDSLLLVAGGIGITPFLSILQEIASAqsnrkyrfpSKVQLIYVIKSSQEICLLNSISPLLSNQQSKKWHLTLKVFVtqeeqssvtvREVLNDLSLVRAVRFGTQSNYAVNGLESLIWMAALVGITSILFVIFLISLNHIFVPVEKKlpseklaapsekvvskektpswVADLIILSSFIIAITGSTLMAILLRWRRLKKqtppvslnqgkaVQVLGPIEEEHEINFGGRPNFEEIFSELEKETAGSDIGVLVCGPESMKESVAKTSQRKSQCFMMNANKDKPYFNFHSLNFTF

MLLLFCRWQLKYLRVATRFgllaeaclallllpilrglslfrllgIQFEASVRYHIWLGTAMIFFATIHGGSTLFVWGVSHHIQDEMWRWQKTGRIYLAGEIALVTGLVMWITSLPQIRRKKFEFFYYThhlyiiflifflfhAGDRHFYMVFGGIFLFGLDKLLRFIQSRPETCILSARVFPSKAIELILPKHAGLKFTPTSVIFMKIPSISKFQWHsfsitssssVDDQTMSLIVKCDGEWTSSLYQMIHAELDSDADQMRCIPVAIEGPYGPATMDFLRYDSLLLVAGGIGITPFLSILQEIASAQSNRKYRFPSKVQLIYVIKSSQEICLLNSISPLLSNQQSKKWHLTLKVFVTQEEQSSVTVREVLNDLSLVRAVRFGTQSNYAVNGLESLIWMAALVGITSILFVIFLISLNHIFVPVEKKLPSEKLAAPSEKVVSKEKTPSWVADLIILSSFIIAITGSTLMAILLRWRRLKKQTPPVSLNQGKAVQVLGPIEEEHEINFGGRPNFEEIFSELEKETAGSDIGVLVCGPESMKESVAKTSQRKSQCFMMNANKDKPYFNFHSLNFTF

*LLLFCRWQLKYLRVATRFGLLAEACLALLLLPILRGLSLFRLLGIQFEASVRYHIWLGTAMIFFATIHGGSTLFVWGVSHHIQDEMWRWQKTGRIYLAGEIALVTGLVMWITSLPQIRRKKFEFFYYTHHLYIIFLIFFLFHAGDRHFYMVFGGIFLFGLDKLLRFIQSRPETCILSARVFPSKAIELILPKHAGLKFTPTSVIFMKIPSISKFQWHSF**************LIVKCDGEWTSSLYQMIHAELDSDADQMRCIPVAIEGPYGPATMDFLRYDSLLLVAGGIGITPFLSILQEIASAQSNRKYRFPSKVQLIYVIKSSQEICLLNSISPLLSNQQSKKWHLTLKVFVTQEEQSSVTVREVLNDLSLVRAVRFGTQSNYAVNGLESLIWMAALVGITSILFVIFLISLNHIFVPVE*********************PSWVADLIILSSFIIAITGSTLMAILLRWRRLKKQTPPVSLNQGKAVQVLGPIEEEHEINFGGRPNFEEIFSEL***TAGSDIGVLVC*****************************YFNF*******

MLLLFCRWQLKYLRVATRFGLLAEACLALLLLPILRGLSLFRLLGIQFEASVRYHIWLGTAMIFFATIHGGSTLFVWGVSHHIQDEMWRWQKTGRIYLAGEIALVTGLVMWITSLPQIRRKKFEFFYYTHHLYIIFLIFFLFHAGDRHFYMVFGGIFLFGLDKLLRFIQSRPETCILSARVFPSKAIELILPKHAGLKFTPTSVIFMKIPSISKFQWHSFSITSSSSVDDQTMSLIVKCDGEWTSSLYQMI**************PVAIEGPYGPATMDFLRYDSLLLVAGGIGITPFLSILQEIASAQS****RFPSKVQLIYVIKSSQEICLLNSISPLL******KWHLTLKVFVTQEEQSSVT**E**************************LIWMAALVGITSILFVIFLISLNHIFVPVEKKLPSEKLAAPSEKVVSKEKTPSWVADLIILSSFIIAITGSTLMAILLR************************IEEEHEINFGGRPNFEEIFSELEKETAGSDIGVLVCGPESMKESVAKTSQRKSQ*****ANKDKPYFNFHSLNFTF

MLLLFCRWQLKYLRVATRFGLLAEACLALLLLPILRGLSLFRLLGIQFEASVRYHIWLGTAMIFFATIHGGSTLFVWGVSHHIQDEMWRWQKTGRIYLAGEIALVTGLVMWITSLPQIRRKKFEFFYYTHHLYIIFLIFFLFHAGDRHFYMVFGGIFLFGLDKLLRFIQSRPETCILSARVFPSKAIELILPKHAGLKFTPTSVIFMKIPSISKFQWHSFSITSSSSVDDQTMSLIVKCDGEWTSSLYQMIHAELDSDADQMRCIPVAIEGPYGPATMDFLRYDSLLLVAGGIGITPFLSILQEIASAQSNRKYRFPSKVQLIYVIKSSQEICLLNSISPLLSNQQSKKWHLTLKVFVTQEEQSSVTVREVLNDLSLVRAVRFGTQSNYAVNGLESLIWMAALVGITSILFVIFLISLNHIFVPVEKKLPSEK*************TPSWVADLIILSSFIIAITGSTLMAILLRWRRLKKQTPPVSLNQGKAVQVLGPIEEEHEINFGGRPNFEEIFSELEKETAGSDIGVLVCGPES***********KSQCFMMNANKDKPYFNFHSLNFTF

MLLLFCRWQLKYLRVATRFGLLAEACLALLLLPILRGLSLFRLLGIQFEASVRYHIWLGTAMIFFATIHGGSTLFVWGVSHHIQDEMWRWQKTGRIYLAGEIALVTGLVMWITSLPQIRRKKFEFFYYTHHLYIIFLIFFLFHAGDRHFYMVFGGIFLFGLDKLLRFIQSRPETCILSARVFPSKAIELILPKHAGLKFTPTSVIFMKIPSISKFQWHSFSITSSSSVDDQTMSLIVKCDGEWTSSLYQMIHAELDSDADQMRCIPVAIEGPYGPATMDFLRYDSLLLVAGGIGITPFLSILQEIASAQSNRKYRFPSKVQLIYVIKSSQEICLLNSISPLLSNQQSKKWHLTLKVFVTQEEQSSVTVREVLNDLSLVRAVRFGTQSNYAVNGLESLIWMAALVGITSILFVIFLISLNHIFVPVEKKLPSEKLAAPSEKVVSKEKTPSWVADLIILSSFIIAITGSTLMAILLRWRRLKKQ************QVLGPIEEEHEINFGGRPNFEEIFSELEKETAGSDIGVLVCGPESMKESVAKTSQRKSQCFMMNANKDKPYFNFHSLNFTF

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		575	2.2.26 [Sep-21-2011]
Q8VY13		728	Ferric reduction oxidase	yes	no	0.968	0.765	0.537	1e-176
Q9LMM2		704	Probable ferric reduction	no	no	0.893	0.730	0.351	1e-94
F4I4K7		717	Ferric reduction oxidase	no	no	0.871	0.698	0.368	6e-94
P92949		725	Ferric reduction oxidase	no	no	0.878	0.696	0.335	4e-90
Q9FLW2		707	Ferric reduction oxidase	no	no	0.885	0.719	0.335	8e-88
Q8W110		699	Ferric reduction oxidase	no	no	0.881	0.725	0.332	4e-86
Q3KTM0		747	Ferric reduction oxidase	no	no	0.92	0.708	0.330	2e-83
Q8RWS6		738	Ferric reduction oxidase	no	no	0.92	0.716	0.330	2e-81
P04839		570	Cytochrome b-245 heavy ch	yes	no	0.483	0.487	0.259	5e-27
Q61093		570	Cytochrome b-245 heavy ch	yes	no	0.483	0.487	0.253	2e-26

>sp\|Q8VY13\|FRO8_ARATH Ferric reduction oxidase 8, mitochondrial OS=Arabidopsis thaliana GN=FRO8 PE=2 SV=1	Back alignment and function desciption

 Score =  617 bits (1592), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 317/590 (53%), Positives = 421/590 (71%), Gaps = 33/590 (5%)

Query: 8   WQLKYLRVATRFGLLAEACLALLLLPILRGLSLFRLLGIQFEASVRYHIWLGTAMIFFAT 67
           WQLKY RVATRFGLLAEACL+LLL P+LRGLS+FRLL I+F ASV+YH+W GT +IFF+ 
Sbjct: 148 WQLKYYRVATRFGLLAEACLSLLLFPVLRGLSMFRLLNIEFAASVKYHVWFGTGLIFFSL 207

Query: 68  IHGGSTLFVWGVSHHIQDEMWRWQKTGRIYLAGEIALVTGLVMWITSLPQIRRKKFEFFY 127
           +HGGSTLF+W ++HHI++E+W+WQ+TGR+Y+AG I+LVTGL+MWITSLPQIRRK FE FY
Sbjct: 208 VHGGSTLFIWTITHHIEEEIWKWQRTGRVYVAGLISLVTGLLMWITSLPQIRRKNFEVFY 267

Query: 128 YTHHLYIIFLIFFLFHAGDRHFYMVFGGIFLFGLDKLLRFIQSRPETCILSARVFPSKAI 187
           YTHHLYI+FL+ FLFHAGDRHFY V  G+FLFGLDK+LR +QSR E+CILSA +F  KAI
Sbjct: 268 YTHHLYIVFLVAFLFHAGDRHFYWVLPGMFLFGLDKILRIVQSRSESCILSANLFSCKAI 327

Query: 188 ELILPKHAGLKFTPTSVIFMKIPSISKFQWHSFSITSSSSVDDQTMSLIVKCDGEWTSSL 247
           EL+LPK   L + P+S IF+ IP +S+FQWH FSI SSSSVD  ++S+++KC+G+WT+S+
Sbjct: 328 ELVLPKDPMLNYAPSSFIFLNIPLVSRFQWHPFSIISSSSVDKHSLSIMMKCEGDWTNSV 387

Query: 248 YQMIHAELDSDADQMRCIPVAIEGPYGPATMDFLRYDSLLLVAGGIGITPFLSILQEIAS 307
           Y  I    + + +++  I V +EGPYGPA++DFLRYD+L LVAGGIGITPFLSIL+E+AS
Sbjct: 388 YNKIEEAANCE-NKINNIIVRVEGPYGPASVDFLRYDNLFLVAGGIGITPFLSILKELAS 446

Query: 308 AQSNRKYRFPSKVQLIYVIKSSQEICLLNSISPLLSNQQSKKWHLTLKVFVTQEEQSS-- 365
                + + P +VQL++ +++ Q++ +L  I+ ++ N      +L LKVFVTQE++ S  
Sbjct: 447 KN---RLKSPKRVQLVFAVRTFQDLNMLLPIASIIFN-PIYNLNLKLKVFVTQEKKPSNG 502

Query: 366 -VTVREVLNDLSLVRAVRFGTQSNYA---VNGLESLIWMAALVGITSILFVIFLISLNHI 421
             T++E L   S V+++  GT  +Y+   + G ES  W+A LV IT + F+ FLI L+H 
Sbjct: 503 TTTLQEFLAQ-SQVQSIHLGTDEDYSRFPIRGPESFRWLATLVLITVLTFLGFLIGLSHF 561

Query: 422 FVPVEKKLPSE--KLAAPSEKVVSKEKTPSWVADLIILSSFIIAITGSTLMAILLRWRRL 479
           F+P E K  S   KLAA      +KEK PSWV DLII+ S++IAI+     A +L+ RR 
Sbjct: 562 FIPSEHKNHSGVMKLAASGAMKTAKEKVPSWVPDLIIIVSYVIAISVGGFAATILQRRRK 621

Query: 480 KKQTPPVS-----------LNQGKAVQVLGPIEEEHEINFGGRPNFEEIFSELEKETAG- 527
            K+ P +S             + K +    PI EEHEI+ G RP  EEI SE EK   G 
Sbjct: 622 HKEAPRMSKEVVIKPEERNFTELKPI----PITEEHEIHIGERPKLEEIMSEFEKNLRGW 677

Query: 528 SDIGVLVCGPESMKESVAKTSQRKSQCFM---MNANKDKPYFNFHSLNFT 574
           S +GVLVCGPES+KE+VA   ++  QCF    +  ++ K   NFHSLNF 
Sbjct: 678 SSVGVLVCGPESVKEAVASMCRQWPQCFGVEDLRRSRMKMNLNFHSLNFN 727

Ferric chelate reductase probably involved in iron reduction in leaf veins for transport. May participate in the transport of electrons to a Fe(3+) ion via FAD and heme intermediates.
Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 1EC: 6EC: .EC: 1EC: .EC: 7

>sp\|Q9LMM2\|FRO1_ARATH Probable ferric reduction oxidase 1 OS=Arabidopsis thaliana GN=FRO1 PE=2 SV=1	Back alignment and function description

>sp\|F4I4K7\|FRO3_ARATH Ferric reduction oxidase 3, mitochondrial OS=Arabidopsis thaliana GN=FRO3 PE=2 SV=1	Back alignment and function description

>sp\|P92949\|FRO2_ARATH Ferric reduction oxidase 2 OS=Arabidopsis thaliana GN=FRO2 PE=1 SV=2	Back alignment and function description

>sp\|Q9FLW2\|FRO5_ARATH Ferric reduction oxidase 5 OS=Arabidopsis thaliana GN=FRO5 PE=2 SV=1	Back alignment and function description

>sp\|Q8W110\|FRO4_ARATH Ferric reduction oxidase 4 OS=Arabidopsis thaliana GN=FRO4 PE=2 SV=1	Back alignment and function description

>sp\|Q3KTM0\|FRO7_ARATH Ferric reduction oxidase 7, chloroplastic OS=Arabidopsis thaliana GN=FRO7 PE=2 SV=1	Back alignment and function description

>sp\|Q8RWS6\|FRO6_ARATH Ferric reduction oxidase 6 OS=Arabidopsis thaliana GN=FRO6 PE=2 SV=1	Back alignment and function description

>sp\|P04839\|CY24B_HUMAN Cytochrome b-245 heavy chain OS=Homo sapiens GN=CYBB PE=1 SV=2	Back alignment and function description

>sp\|Q61093\|CY24B_MOUSE Cytochrome b-245 heavy chain OS=Mus musculus GN=Cybb PE=2 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		575
255540531		726	ferric-chelate reductase, putative [Rici	0.984	0.779	0.706	0.0
225456909		703	PREDICTED: ferric reduction oxidase 8, m	0.961	0.786	0.676	0.0
224119412		743	predicted protein [Populus trichocarpa]	0.984	0.761	0.672	0.0
224133654		722	predicted protein [Populus trichocarpa]	0.982	0.782	0.708	0.0
356562684		711	PREDICTED: uncharacterized protein LOC10	0.956	0.773	0.626	0.0
449445770		716	PREDICTED: ferric reduction oxidase 8, m	0.968	0.777	0.603	0.0
449523762		716	PREDICTED: ferric reduction oxidase 8, m	0.968	0.777	0.605	0.0
22327681		728	ferric reduction oxidase 8 [Arabidopsis	0.968	0.765	0.537	1e-174
9759018		713	FRO1 and FRO2-like protein [Arabidopsis	0.946	0.762	0.527	1e-169
297792309		728	ATFRO8/FRO8 [Arabidopsis lyrata subsp. l	0.975	0.770	0.540	1e-167

>gi\|255540531\|ref\|XP_002511330.1\| ferric-chelate reductase, putative [Ricinus communis] gi\|223550445\|gb\|EEF51932.1\| ferric-chelate reductase, putative [Ricinus communis]	Back alignment and taxonomy information

 Score =  804 bits (2077), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 409/579 (70%), Positives = 493/579 (85%), Gaps = 13/579 (2%)

Query: 8   WQLKYLRVATRFGLLAEACLALLLLPILRGLSLFRLLGIQFEASVRYHIWLGTAMIFFAT 67
           WQLKYLRVATRFGLLAEACLALLLLPILRGL+LF+L GIQFEA+VRYH+WLGT+MIFFAT
Sbjct: 148 WQLKYLRVATRFGLLAEACLALLLLPILRGLALFQLFGIQFEATVRYHVWLGTSMIFFAT 207

Query: 68  IHGGSTLFVWGVSHHIQDE----MWRWQKTGRIYLAGEIALVTGLVMWITSLPQIRRKKF 123
           +HG STLF+WGVSHHIQDE    + RWQKTGRIYLAGE+ALV GL +WITSLPQIRRK+F
Sbjct: 208 LHGASTLFIWGVSHHIQDEATLLVRRWQKTGRIYLAGEMALVAGLAIWITSLPQIRRKRF 267

Query: 124 EFFYYTHHLYIIFLIFFLFHAGDRHFYMVFGGIFLFGLDKLLRFIQSRPETCILSARVFP 183
           E FYYTHHLY++FLIFFLFHAGDRHFYMVF GIFLFGLDKLLR +QS+P+TCILSAR+FP
Sbjct: 268 EIFYYTHHLYVVFLIFFLFHAGDRHFYMVFPGIFLFGLDKLLRIVQSKPDTCILSARLFP 327

Query: 184 SKAIELILPKHAGLKFTPTSVIFMKIPSISKFQWHSFSITSSSSVDDQTMSLIVKCDGEW 243
           +KA+ELILPK   LK+TPTSVI MKIPSISKFQWHSFSITSSS++D++T+SLI++  G W
Sbjct: 328 NKAVELILPKDPSLKYTPTSVIHMKIPSISKFQWHSFSITSSSNIDERTISLIIRGTGGW 387

Query: 244 TSSLYQMIHAELDSDADQMRCIPVAIEGPYGPATMDFLRYDSLLLVAGGIGITPFLSILQ 303
           TSSLY MI AELDS+ADQM CIP AI+GPYGPA++DFLRYDSLLL+AGGIGITPFLSIL+
Sbjct: 388 TSSLYNMIQAELDSNADQMSCIPTAIQGPYGPASVDFLRYDSLLLIAGGIGITPFLSILK 447

Query: 304 EIASAQ-SNRKYRFPSKVQLIYVIKSSQEICLLNSISPLLSNQQSKKWHLTLKVFVTQEE 362
           EIAS Q S+R YR P ++QLI+VIK+SQ+ICLLNSISPLL NQ SK+  L LKVFVTQE+
Sbjct: 448 EIASLQRSSRSYRLPEQIQLIHVIKNSQDICLLNSISPLLLNQSSKQLRLKLKVFVTQEQ 507

Query: 363 QSSVTVREVLNDLSLVRAVRFGTQ-SNYAVNGLESLIWMAALVGITSILFVIFLISLNHI 421
           +++ T+RE+LNDLSLV+ V F T+ SNYA++GLE+ +WMAA+  +TSI+F++FL+  NH+
Sbjct: 508 KNNATLRELLNDLSLVQTVNFSTKCSNYAIHGLETPLWMAAITALTSIVFLVFLMCFNHL 567

Query: 422 FVPVEKK-LPSEKLAAPSEKVVSKEKTPSWVADLIILSSFIIAITGSTLMAILLRWRRLK 480
           F P+EKK   S K+A   EK V+KEKTPS + D+++LSSFIIA+T ST +AI+LRW+RLK
Sbjct: 568 FDPIEKKSAASVKMAVRPEKKVAKEKTPSSIVDILLLSSFIIAVTCSTFIAIILRWKRLK 627

Query: 481 KQTPPVSLNQG-----KAVQVLGPIEEEHEINFGGRPNFEEIFSELEKETAGSDIGVLVC 535
           K  P VS  QG      ++++ G   EE EI+FGGRPNF++IFS+   ET GSD+GVLVC
Sbjct: 628 KDIPSVSQRQGIFLEPSSMELRGS-REEQEIHFGGRPNFQDIFSKFTNETVGSDVGVLVC 686

Query: 536 GPESMKESVAKTSQRKSQCFMMNANKDKPYFNFHSLNFT 574
           GPE+MKESVA     KSQ F + A K KPYF+FHSL+F+
Sbjct: 687 GPETMKESVASFCHLKSQGFNVGAEKKKPYFSFHSLSFS 725

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|225456909\|ref\|XP_002277760.1\| PREDICTED: ferric reduction oxidase 8, mitochondrial [Vitis vinifera] gi\|297733716\|emb\|CBI14963.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|224119412\|ref\|XP_002318065.1\| predicted protein [Populus trichocarpa] gi\|222858738\|gb\|EEE96285.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|224133654\|ref\|XP_002321628.1\| predicted protein [Populus trichocarpa] gi\|222868624\|gb\|EEF05755.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|356562684\|ref\|XP_003549599.1\| PREDICTED: uncharacterized protein LOC100816560 [Glycine max]	Back alignment and taxonomy information

>gi\|449445770\|ref\|XP_004140645.1\| PREDICTED: ferric reduction oxidase 8, mitochondrial-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|449523762\|ref\|XP_004168892.1\| PREDICTED: ferric reduction oxidase 8, mitochondrial-like [Cucumis sativus]	Back alignment and taxonomy information

>gi|22327681|ref|NP_199827.2| ferric reduction oxidase 8 [Arabidopsis thaliana] gi|75161398|sp|Q8VY13.1|FRO8_ARATH RecName: Full=Ferric reduction oxidase 8, mitochondrial; Short=AtFRO8; AltName: Full=Ferric-chelate reductase 8; Flags: Precursor gi|18377668|gb|AAL66984.1| putative FRO1 and FRO2 protein [Arabidopsis thaliana] gi|27754744|gb|AAO22815.1| putative FRO1 and FRO2 protein [Arabidopsis thaliana] gi|332008522|gb|AED95905.1| ferric reduction oxidase 8 [Arabidopsis thaliana]

Back alignment and taxonomy information

>gi\|9759018\|dbj\|BAB09387.1\| FRO1 and FRO2-like protein [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|297792309\|ref\|XP_002864039.1\| ATFRO8/FRO8 [Arabidopsis lyrata subsp. lyrata] gi\|297309874\|gb\|EFH40298.1\| ATFRO8/FRO8 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		575
TAIR\|locus:2157697		728	FRO8 "ferric reduction oxidase	0.973	0.769	0.478	9.5e-137
TAIR\|locus:2025366		704	FRO1 "AT1G01590" [Arabidopsis	0.819	0.669	0.327	1.1e-71
TAIR\|locus:2178677		699	FRO4 "ferric reduction oxidase	0.634	0.522	0.343	8.7e-69
TAIR\|locus:2025351		725	FRO2 "AT1G01580" [Arabidopsis	0.826	0.655	0.305	2.7e-68
TAIR\|locus:2157032		747	FRO7 "ferric reduction oxidase	0.871	0.670	0.305	1.6e-61
TAIR\|locus:2157027		738	FRO6 "ferric reduction oxidase	0.878	0.684	0.306	3.1e-60
UNIPROTKB\|F5GWU5		303	CYBB "Cytochrome b-245 heavy c	0.382	0.726	0.255	6.6e-27
UNIPROTKB\|F1NTW0		566	CYBB "Uncharacterized protein"	0.262	0.266	0.311	4e-25
ZFIN\|ZDB-GENE-040426-1380		571	cybb "cytochrome b-245, beta p	0.354	0.357	0.293	5.5e-25
UNIPROTKB\|F5GWD2		538	CYBB "Cytochrome b-245 heavy c	0.382	0.408	0.255	4.2e-24

TAIR\|locus:2157697 FRO8 "ferric reduction oxidase 8" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1339 (476.4 bits), Expect = 9.5e-137, P = 9.5e-137
 Identities = 280/585 (47%), Positives = 378/585 (64%)

Query:     8 WQLKYLRVATRFXXXXXXXXXXXXXXXXXXXXXXXXXXIQFEASVRYHIWLGTAMIFFAT 67
             WQLKY RVATRF                          I+F ASV+YH+W GT +IFF+ 
Sbjct:   148 WQLKYYRVATRFGLLAEACLSLLLFPVLRGLSMFRLLNIEFAASVKYHVWFGTGLIFFSL 207

Query:    68 IHGGSTLFVWGVSHHIQDEMWRWQKTGRIYLAGEIALVTGLVMWITSLPQIRRKKFEFFY 127
             +HGGSTLF+W ++HHI++E+W+WQ+TGR+Y+AG I+LVTGL+MWITSLPQIRRK FE FY
Sbjct:   208 VHGGSTLFIWTITHHIEEEIWKWQRTGRVYVAGLISLVTGLLMWITSLPQIRRKNFEVFY 267

Query:   128 YTXXXXXXXXXXXXXXAGDRHFYMVFGGIFLFGLDKLLRFIQSRPETCILSARVFPSKAI 187
             YT              AGDRHFY V  G+FLFGLDK+LR +QSR E+CILSA +F  KAI
Sbjct:   268 YTHHLYIVFLVAFLFHAGDRHFYWVLPGMFLFGLDKILRIVQSRSESCILSANLFSCKAI 327

Query:   188 ELILPKHAGLKFTPTSVIFMKIPSISKFQWHXXXXXXXXXVDDQTMSLIVKCDGEWTSSL 247
             EL+LPK   L + P+S IF+ IP +S+FQWH         VD  ++S+++KC+G+WT+S+
Sbjct:   328 ELVLPKDPMLNYAPSSFIFLNIPLVSRFQWHPFSIISSSSVDKHSLSIMMKCEGDWTNSV 387

Query:   248 YQMIHAELDSDADQMRCIPVAIEGPYGPATMDFLRYDSLLLVAGGIGITPFLSILQEIAS 307
             Y  I    + + +++  I V +EGPYGPA++DFLRYD+L LVAGGIGITPFLSIL+E+AS
Sbjct:   388 YNKIEEAANCE-NKINNIIVRVEGPYGPASVDFLRYDNLFLVAGGIGITPFLSILKELAS 446

Query:   308 AQSNRKYRFPSKVQLIYVIKSSQEICLLNSISPLLSNQQSKKWHLTLKVFVTQEEQSS-- 365
                NR  + P +VQL++ +++ Q++ +L  I+ ++ N      +L LKVFVTQE++ S  
Sbjct:   447 --KNR-LKSPKRVQLVFAVRTFQDLNMLLPIASIIFNP-IYNLNLKLKVFVTQEKKPSNG 502

Query:   366 -VTVREVLNDLSLVRAVRFGTQSNYA---VNGLESLIWMAALVGITSILFVIFLISLNHI 421
               T++E L   S V+++  GT  +Y+   + G ES  W+A LV IT + F+ FLI L+H 
Sbjct:   503 TTTLQEFLAQ-SQVQSIHLGTDEDYSRFPIRGPESFRWLATLVLITVLTFLGFLIGLSHF 561

Query:   422 FVPVEKKLPSE--KLAAPSEKVVSKEKTPSWVADLIILSSFIIAITGSTLMAILLRWRRL 479
             F+P E K  S   KLAA      +KEK PSWV DLII+ S++IAI+     A +L+ RR 
Sbjct:   562 FIPSEHKNHSGVMKLAASGAMKTAKEKVPSWVPDLIIIVSYVIAISVGGFAATILQRRRK 621

Query:   480 KKQTPPVSLN-----QGKAVQVLGPIE--EEHEINFGGRPNFEEIFSELEKETAG-SDIG 531
              K+ P +S       + +    L PI   EEHEI+ G RP  EEI SE EK   G S +G
Sbjct:   622 HKEAPRMSKEVVIKPEERNFTELKPIPITEEHEIHIGERPKLEEIMSEFEKNLRGWSSVG 681

Query:   532 VLVCGPESMKESVAKTSQRKSQCFM---MNANKDKPYFNFHSLNF 573
             VLVCGPES+KE+VA   ++  QCF    +  ++ K   NFHSLNF
Sbjct:   682 VLVCGPESVKEAVASMCRQWPQCFGVEDLRRSRMKMNLNFHSLNF 726

GO:0005506 "iron ion binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA;ISS

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0000293 "ferric-chelate reductase activity" evidence=IDA

GO:0000023 "maltose metabolic process" evidence=RCA

GO:0016126 "sterol biosynthetic process" evidence=RCA

GO:0019252 "starch biosynthetic process" evidence=RCA

GO:0019745 "pentacyclic triterpenoid biosynthetic process" evidence=RCA

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA

TAIR\|locus:2025366 FRO1 "AT1G01590" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2178677 FRO4 "ferric reduction oxidase 4" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2025351 FRO2 "AT1G01580" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2157032 FRO7 "ferric reduction oxidase 7" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2157027 FRO6 "ferric reduction oxidase 6" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

UNIPROTKB\|F5GWU5 CYBB "Cytochrome b-245 heavy chain" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|F1NTW0 CYBB "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-040426-1380 cybb "cytochrome b-245, beta polypeptide (chronic granulomatous disease)" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

UNIPROTKB\|F5GWD2 CYBB "Cytochrome b-245 heavy chain" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8VY13	FRO8_ARATH	1, ., 1, 6, ., 1, ., 7	0.5372	0.9686	0.7651	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	1.16.1	LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	fgenesh4_pm.C_LG_XII000303	oxidoreductase/ferric-chelate reductase (EC-1.16.1.7) (743 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
		Sorry, there are no predicted associations at the current settings.

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		575
PLN02844		722	PLN02844, PLN02844, oxidoreductase/ferric-chelate	0.0
PLN02292		702	PLN02292, PLN02292, ferric-chelate reductase	1e-123
PLN02631		699	PLN02631, PLN02631, ferric-chelate reductase	2e-98
cd06186		210	cd06186, NOX_Duox_like_FAD_NADP, NADPH oxidase (NO	7e-38
pfam01794		122	pfam01794, Ferric_reduct, Ferric reductase like tr	5e-21
pfam08022		103	pfam08022, FAD_binding_8, FAD-binding domain	5e-20
cd00322		223	cd00322, FNR_like, Ferredoxin reductase (FNR), an	2e-16
cd06198		216	cd06198, FNR_like_3, NAD(P) binding domain of ferr	4e-14
COG1018		266	COG1018, Hmp, Flavodoxin reductases (ferredoxin-NA	2e-08
pfam08030		149	pfam08030, NAD_binding_6, Ferric reductase NAD bin	2e-08
cd06212		232	cd06212, monooxygenase_like, The oxygenase reducta	2e-08
cd06216		243	cd06216, FNR_iron_sulfur_binding_2, Iron-sulfur bi	2e-07
COG4097		438	COG4097, COG4097, Predicted ferric reductase [Inor	2e-07
cd06184		247	cd06184, flavohem_like_fad_nad_binding, FAD_NAD(P)	7e-07
cd06209		228	cd06209, BenDO_FAD_NAD, Benzoate dioxygenase reduc	2e-06
PRK00054		250	PRK00054, PRK00054, dihydroorotate dehydrogenase e	4e-06
cd06190		232	cd06190, T4MO_e_transfer_like, Toluene-4-monoxygen	6e-06
COG0543		252	COG0543, UbiB, 2-polyprenylphenol hydroxylase and	7e-06
cd06187		224	cd06187, O2ase_reductase_like, The oxygenase reduc	1e-05
cd06183		234	cd06183, cyt_b5_reduct_like, Cytochrome b5 reducta	2e-05
cd06217		235	cd06217, FNR_iron_sulfur_binding_3, Iron-sulfur bi	2e-05
pfam08030		149	pfam08030, NAD_binding_6, Ferric reductase NAD bin	3e-05
cd06221		253	cd06221, sulfite_reductase_like, Anaerobic sulfite	4e-05
cd06185		211	cd06185, PDR_like, Phthalate dioxygenase reductase	2e-04
cd06191		231	cd06191, FNR_iron_sulfur_binding, Iron-sulfur bind	3e-04
PRK08345		289	PRK08345, PRK08345, cytochrome-c3 hydrogenase subu	4e-04
pfam00175		106	pfam00175, NAD_binding_1, Oxidoreductase NAD-bindi	4e-04
cd06215		231	cd06215, FNR_iron_sulfur_binding_1, Iron-sulfur bi	5e-04
cd06189		224	cd06189, flavin_oxioreductase, NAD(P)H dependent f	0.001
cd06220		233	cd06220, DHOD_e_trans_like2, FAD/NAD binding domai	0.001
cd06211		238	cd06211, phenol_2-monooxygenase_like, Phenol 2-mon	0.001
PRK13289		399	PRK13289, PRK13289, bifunctional nitric oxide diox	0.002

>gnl\|CDD\|215453 PLN02844, PLN02844, oxidoreductase/ferric-chelate reductase	Back alignment and domain information

 Score =  965 bits (2495), Expect = 0.0
 Identities = 423/575 (73%), Positives = 491/575 (85%), Gaps = 9/575 (1%)

Query: 8   WQLKYLRVATRFGLLAEACLALLLLPILRGLSLFRLLGIQFEASVRYHIWLGTAMIFFAT 67
           WQLKYLRVATRFGLLAEACLALLLLP+LRGL+LFRLLGIQFEASVRYH+WLGT+MIFFAT
Sbjct: 148 WQLKYLRVATRFGLLAEACLALLLLPVLRGLALFRLLGIQFEASVRYHVWLGTSMIFFAT 207

Query: 68  IHGGSTLFVWGVSHHIQDEMWRWQKTGRIYLAGEIALVTGLVMWITSLPQIRRKKFEFFY 127
           +HG STLF+WG+SHHIQDE+W+WQKTGRIYLAGEIALVTGLV+WITSLPQIRRK+FE FY
Sbjct: 208 VHGASTLFIWGISHHIQDEIWKWQKTGRIYLAGEIALVTGLVIWITSLPQIRRKRFEIFY 267

Query: 128 YTHHLYIIFLIFFLFHAGDRHFYMVFGGIFLFGLDKLLRFIQSRPETCILSARVFPSKAI 187
           YTHHLYI+FLIFFLFHAGDRHFYMVF GIFLFGLDKLLR +QSRPETCILSAR+FP KAI
Sbjct: 268 YTHHLYIVFLIFFLFHAGDRHFYMVFPGIFLFGLDKLLRIVQSRPETCILSARLFPCKAI 327

Query: 188 ELILPKHAGLKFTPTSVIFMKIPSISKFQWHSFSITSSSSVDDQTMSLIVKCDGEWTSSL 247
           EL+LPK  GLK+ PTSVIFMKIPSIS+FQWH FSITSSS++DD TMS+I+KC+G WT+SL
Sbjct: 328 ELVLPKDPGLKYAPTSVIFMKIPSISRFQWHPFSITSSSNIDDHTMSVIIKCEGGWTNSL 387

Query: 248 YQMIHAELDSDADQMRCIPVAIEGPYGPATMDFLRYDSLLLVAGGIGITPFLSILQEIAS 307
           Y  I AELDS+ +QM CIPVAIEGPYGPA++DFLRYDSLLLVAGGIGITPFLSIL+EIAS
Sbjct: 388 YNKIQAELDSETNQMNCIPVAIEGPYGPASVDFLRYDSLLLVAGGIGITPFLSILKEIAS 447

Query: 308 AQSNRKYRFPSKVQLIYVIKSSQEICLLNSISPLLSNQQSKKWHLTLKVFVTQEEQSSVT 367
             S+R YRFP +VQLIYV+K SQ+ICLLN IS LL NQ S + +L LKVFVTQEE+ + T
Sbjct: 448 QSSSR-YRFPKRVQLIYVVKKSQDICLLNPISSLLLNQSSNQLNLKLKVFVTQEEKPNAT 506

Query: 368 VREVLNDLSLVRAVRFGTQ-SNYAVNGLESLIWMAALVGITSILFVIFLISLNHIFVPVE 426
           +RE+LN  S V+ V F T+ S YA++GLES +WMAA+V +TSI F++FLI LNHIF+P E
Sbjct: 507 LRELLNQFSQVQTVNFSTKCSRYAIHGLESFLWMAAMVALTSITFLVFLIGLNHIFIPSE 566

Query: 427 KKLPS-EKLAAPSEKVVSKEKTPSWVADLIILSSFIIAITGSTLMAILLRWRRLKKQTPP 485
            K  S  K+AA  E   +KEKTPSWV DL+++ SFIIAIT ST +AI+LRWRRLKK+ P 
Sbjct: 567 HKSHSGVKMAASGEMKTAKEKTPSWVVDLLLIVSFIIAITCSTFVAIILRWRRLKKEIPR 626

Query: 486 VSLNQGKA-----VQVLGPIEEEHEINFGGRPNFEEIFSELEKETAGSDIGVLVCGPESM 540
           VS  QG       ++  GP+ EEHEI+FGGRPNF++IFS+  KET GSDIGVLVCGPE+M
Sbjct: 627 VSQKQGIKPEEGSMEKRGPVLEEHEIHFGGRPNFQDIFSKFPKETRGSDIGVLVCGPETM 686

Query: 541 KESVAKTSQRKSQCFMMNAN-KDKPYFNFHSLNFT 574
           KESVA   + KSQCF +  + K K YF+FHSLNFT
Sbjct: 687 KESVASMCRLKSQCFNVGDDGKRKMYFSFHSLNFT 721

Length = 722

>gnl\|CDD\|215165 PLN02292, PLN02292, ferric-chelate reductase	Back alignment and domain information

>gnl\|CDD\|178238 PLN02631, PLN02631, ferric-chelate reductase	Back alignment and domain information

>gnl\|CDD\|99783 cd06186, NOX_Duox_like_FAD_NADP, NADPH oxidase (NOX) catalyzes the generation of reactive oxygen species (ROS) such as superoxide and hydrogen peroxide	Back alignment and domain information

>gnl\|CDD\|216705 pfam01794, Ferric_reduct, Ferric reductase like transmembrane component	Back alignment and domain information

>gnl\|CDD\|219702 pfam08022, FAD_binding_8, FAD-binding domain	Back alignment and domain information

>gnl\|CDD\|99778 cd00322, FNR_like, Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I	Back alignment and domain information

>gnl\|CDD\|99795 cd06198, FNR_like_3, NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) domain, which varies in orientation with respect to the NAD(P) binding domain	Back alignment and domain information

>gnl\|CDD\|223949 COG1018, Hmp, Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 [Energy production and conversion]	Back alignment and domain information

>gnl\|CDD\|203841 pfam08030, NAD_binding_6, Ferric reductase NAD binding domain	Back alignment and domain information

>gnl\|CDD\|99808 cd06212, monooxygenase_like, The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons	Back alignment and domain information

>gnl\|CDD\|99812 cd06216, FNR_iron_sulfur_binding_2, Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain	Back alignment and domain information

>gnl\|CDD\|226582 COG4097, COG4097, Predicted ferric reductase [Inorganic ion transport and metabolism]	Back alignment and domain information

>gnl\|CDD\|99781 cd06184, flavohem_like_fad_nad_binding, FAD_NAD(P)H binding domain of flavohemoglobin	Back alignment and domain information

>gnl\|CDD\|99805 cd06209, BenDO_FAD_NAD, Benzoate dioxygenase reductase (BenDO) FAD/NAD binding domain	Back alignment and domain information

>gnl\|CDD\|234601 PRK00054, PRK00054, dihydroorotate dehydrogenase electron transfer subunit; Reviewed	Back alignment and domain information

>gnl\|CDD\|99787 cd06190, T4MO_e_transfer_like, Toluene-4-monoxygenase electron transfer component of Pseudomonas mendocina hydroxylates toluene and forms p-cresol as part of a three component toluene-4-monoxygenase system	Back alignment and domain information

>gnl\|CDD\|223617 COG0543, UbiB, 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases [Coenzyme metabolism / Energy production and conversion]	Back alignment and domain information

>gnl\|CDD\|99784 cd06187, O2ase_reductase_like, The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons using oxygen as the oxidant	Back alignment and domain information

>gnl\|CDD\|99780 cd06183, cyt_b5_reduct_like, Cytochrome b5 reductase catalyzes the reduction of 2 molecules of cytochrome b5 using NADH as an electron donor	Back alignment and domain information

>gnl\|CDD\|99813 cd06217, FNR_iron_sulfur_binding_3, Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain	Back alignment and domain information

>gnl\|CDD\|203841 pfam08030, NAD_binding_6, Ferric reductase NAD binding domain	Back alignment and domain information

>gnl\|CDD\|99817 cd06221, sulfite_reductase_like, Anaerobic sulfite reductase contains an FAD and NADPH binding module with structural similarity to ferredoxin reductase and sequence similarity to dihydroorotate dehydrogenases	Back alignment and domain information

>gnl\|CDD\|99782 cd06185, PDR_like, Phthalate dioxygenase reductase (PDR) is an FMN-dependent reductase that mediates electron transfer from NADH to FMN to an iron sulfur cluster	Back alignment and domain information

>gnl\|CDD\|99788 cd06191, FNR_iron_sulfur_binding, Iron-sulfur binding Ferredoxin Reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with a C-terminal iron-sulfur binding cluster domain	Back alignment and domain information

>gnl\|CDD\|236247 PRK08345, PRK08345, cytochrome-c3 hydrogenase subunit gamma; Provisional	Back alignment and domain information

>gnl\|CDD\|215769 pfam00175, NAD_binding_1, Oxidoreductase NAD-binding domain	Back alignment and domain information

>gnl\|CDD\|99811 cd06215, FNR_iron_sulfur_binding_1, Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain	Back alignment and domain information

>gnl\|CDD\|99786 cd06189, flavin_oxioreductase, NAD(P)H dependent flavin oxidoreductases use flavin as a substrate in mediating electron transfer from iron complexes or iron proteins	Back alignment and domain information

>gnl\|CDD\|99816 cd06220, DHOD_e_trans_like2, FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins	Back alignment and domain information

>gnl\|CDD\|99807 cd06211, phenol_2-monooxygenase_like, Phenol 2-monooxygenase (phenol hydroxylase) is a flavoprotein monooxygenase, able to use molecular oxygen as a substrate in the microbial degredation of phenol	Back alignment and domain information

>gnl\|CDD\|237337 PRK13289, PRK13289, bifunctional nitric oxide dioxygenase/dihydropteridine reductase 2; Provisional	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		575
PLN02844		722	oxidoreductase/ferric-chelate reductase	100.0
PLN02292		702	ferric-chelate reductase	100.0
PLN02631		699	ferric-chelate reductase	100.0
KOG0039		646	consensus Ferric reductase, NADH/NADPH oxidase and	100.0
COG4097		438	Predicted ferric reductase [Inorganic ion transpor	100.0
PRK10684		332	HCP oxidoreductase, NADH-dependent; Provisional	100.0
TIGR02160		352	PA_CoA_Oxy5 phenylacetate-CoA oxygenase/reductase,	100.0
COG1018		266	Hmp Flavodoxin reductases (ferredoxin-NADPH reduct	100.0
PRK08345		289	cytochrome-c3 hydrogenase subunit gamma; Provision	100.0
cd06221		253	sulfite_reductase_like Anaerobic sulfite reductase	100.0
PRK08221		263	anaerobic sulfite reductase subunit B; Provisional	99.97
PRK06222		281	ferredoxin-NADP(+) reductase subunit alpha; Review	99.97
cd06218		246	DHOD_e_trans FAD/NAD binding domain in the electro	99.97
cd06192		243	DHOD_e_trans_like FAD/NAD binding domain (electron	99.97
PRK00054		250	dihydroorotate dehydrogenase electron transfer sub	99.97
cd06189		224	flavin_oxioreductase NAD(P)H dependent flavin oxid	99.97
cd06219		248	DHOD_e_trans_like1 FAD/NAD binding domain in the e	99.97
cd06215		231	FNR_iron_sulfur_binding_1 Iron-sulfur binding ferr	99.97
TIGR02911		261	sulfite_red_B sulfite reductase, subunit B. Member	99.97
cd06210		236	MMO_FAD_NAD_binding Methane monooxygenase (MMO) re	99.97
PRK08051		232	fre FMN reductase; Validated	99.97
cd06216		243	FNR_iron_sulfur_binding_2 Iron-sulfur binding ferr	99.97
cd06190		232	T4MO_e_transfer_like Toluene-4-monoxygenase electr	99.97
PRK11872		340	antC anthranilate dioxygenase reductase; Provision	99.97
cd06217		235	FNR_iron_sulfur_binding_3 Iron-sulfur binding ferr	99.97
cd06211		238	phenol_2-monooxygenase_like Phenol 2-monooxygenase	99.97
cd06213		227	oxygenase_e_transfer_subunit The oxygenase reducta	99.97
cd06220		233	DHOD_e_trans_like2 FAD/NAD binding domain in the e	99.97
cd06188		283	NADH_quinone_reductase Na+-translocating NADH:quin	99.97
cd06191		231	FNR_iron_sulfur_binding Iron-sulfur binding Ferred	99.97
PRK05802		320	hypothetical protein; Provisional	99.96
PRK07609		339	CDP-6-deoxy-delta-3,4-glucoseen reductase; Validat	99.96
cd06212		232	monooxygenase_like The oxygenase reductase FAD/NAD	99.96
cd06195		241	FNR1 Ferredoxin-NADP+ (oxido)reductase is an FAD-c	99.96
cd06187		224	O2ase_reductase_like The oxygenase reductase FAD/N	99.96
cd06209		228	BenDO_FAD_NAD Benzoate dioxygenase reductase (BenD	99.96
cd06184		247	flavohem_like_fad_nad_binding FAD_NAD(P)H binding	99.96
cd00322		223	FNR_like Ferredoxin reductase (FNR), an FAD and NA	99.96
cd06186		210	NOX_Duox_like_FAD_NADP NADPH oxidase (NOX) catalyz	99.96
cd06196		218	FNR_like_1 Ferredoxin reductase-like proteins cata	99.96
cd06194		222	FNR_N-term_Iron_sulfur_binding Iron-sulfur binding	99.96
cd06198		216	FNR_like_3 NAD(P) binding domain of ferredoxin red	99.96
cd06183		234	cyt_b5_reduct_like Cytochrome b5 reductase catalyz	99.96
cd06214		241	PA_degradation_oxidoreductase_like NAD(P) binding	99.96
cd06197		220	FNR_like_2 FAD/NAD(P) binding domain of ferredoxin	99.96
PRK10926		248	ferredoxin-NADP reductase; Provisional	99.96
PLN03116		307	ferredoxin--NADP+ reductase; Provisional	99.96
PRK13289		399	bifunctional nitric oxide dioxygenase/dihydropteri	99.95
PTZ00274		325	cytochrome b5 reductase; Provisional	99.95
cd06208		286	CYPOR_like_FNR These ferredoxin reductases are rel	99.95
PRK05464		409	Na(+)-translocating NADH-quinone reductase subunit	99.95
PLN03115		367	ferredoxin--NADP(+) reductase; Provisional	99.95
PRK05713		312	hypothetical protein; Provisional	99.95
PTZ00319		300	NADH-cytochrome B5 reductase; Provisional	99.95
cd06200		245	SiR_like1 Cytochrome p450- like alpha subunits of	99.95
PRK12778		752	putative bifunctional 2-polyprenylphenol hydroxyla	99.95
TIGR01941		405	nqrF NADH:ubiquinone oxidoreductase, Na(+)-translo	99.95
PRK12775		1006	putative trifunctional 2-polyprenylphenol hydroxyl	99.94
cd06182		267	CYPOR_like NADPH cytochrome p450 reductase (CYPOR)	99.93
TIGR03224		411	benzo_boxA benzoyl-CoA oxygenase/reductase, BoxA p	99.93
cd06185		211	PDR_like Phthalate dioxygenase reductase (PDR) is	99.93
PRK12779		944	putative bifunctional glutamate synthase subunit b	99.93
cd06201		289	SiR_like2 Cytochrome p450- like alpha subunits of	99.93
COG0543		252	UbiB 2-polyprenylphenol hydroxylase and related fl	99.92
PLN02252		888	nitrate reductase [NADPH]	99.92
KOG0534		286	consensus NADH-cytochrome b-5 reductase [Coenzyme	99.91
cd06193		235	siderophore_interacting Siderophore interacting pr	99.89
PTZ00306		1167	NADH-dependent fumarate reductase; Provisional	99.89
PF08030		156	NAD_binding_6: Ferric reductase NAD binding domain	99.84
cd06199		360	SiR Cytochrome p450- like alpha subunits of E. col	99.84
TIGR01931		597	cysJ sulfite reductase [NADPH] flavoprotein, alpha	99.82
cd06206		384	bifunctional_CYPOR These bifunctional proteins fus	99.8
cd06207		382	CyPoR_like NADPH cytochrome p450 reductase (CYPOR)	99.8
PRK06214		530	sulfite reductase; Provisional	99.78
PRK10953		600	cysJ sulfite reductase subunit alpha; Provisional	99.76
cd06203		398	methionine_synthase_red Human methionine synthase	99.76
PF01794		125	Ferric_reduct: Ferric reductase like transmembrane	99.75
cd06204		416	CYPOR NADPH cytochrome p450 reductase (CYPOR) serv	99.75
PF08022		105	FAD_binding_8: FAD-binding domain; InterPro: IPR01	99.74
COG2871		410	NqrF Na+-transporting NADH:ubiquinone oxidoreducta	99.72
cd06202		406	Nitric_oxide_synthase The ferredoxin-reductase (FN	99.71
PRK06567		1028	putative bifunctional glutamate synthase subunit b	99.66
PF00175		109	NAD_binding_1: Oxidoreductase NAD-binding domain ;	99.57
COG0369		587	CysJ Sulfite reductase, alpha subunit (flavoprotei	99.48
KOG3378		385	consensus Globins and related hemoproteins [Energy	99.47
PF00970		99	FAD_binding_6: Oxidoreductase FAD-binding domain;	99.45
KOG1158		645	consensus NADP/FAD dependent oxidoreductase [Energ	99.27
PRK05419		205	putative sulfite oxidase subunit YedZ; Reviewed	98.76
KOG1159		574	consensus NADP-dependent flavoprotein reductase [E	98.73
PRK10713		84	2Fe-2S ferredoxin YfaE; Provisional	98.62
CHL00134		99	petF ferredoxin; Validated	98.52
TIGR02008		97	fdx_plant ferredoxin [2Fe-2S]. This model represen	98.45
PLN03136		148	Ferredoxin; Provisional	98.43
PTZ00038		191	ferredoxin; Provisional	98.37
COG2717		209	Predicted membrane protein [Function unknown]	98.18
cd00207		84	fer2 2Fe-2S iron-sulfur cluster binding domain. Ir	97.95
PF00111		78	Fer2: 2Fe-2S iron-sulfur cluster binding domain; I	97.88
PRK07609		339	CDP-6-deoxy-delta-3,4-glucoseen reductase; Validat	97.85
COG0633		102	Fdx Ferredoxin [Energy production and conversion]	97.82
COG2375		265	ViuB Siderophore-interacting protein [Inorganic io	97.7
PRK11872		340	antC anthranilate dioxygenase reductase; Provision	97.69
PRK05713		312	hypothetical protein; Provisional	97.68
TIGR02007		110	fdx_isc ferredoxin, 2Fe-2S type, ISC system. This	97.46
PRK05464		409	Na(+)-translocating NADH-quinone reductase subunit	97.28
TIGR01941		405	nqrF NADH:ubiquinone oxidoreductase, Na(+)-translo	96.98
PF08021		117	FAD_binding_9: Siderophore-interacting FAD-binding	96.86
PLN02593		117	adrenodoxin-like ferredoxin protein	96.74
COG2871		410	NqrF Na+-transporting NADH:ubiquinone oxidoreducta	95.7
cd06186		210	NOX_Duox_like_FAD_NADP NADPH oxidase (NOX) catalyz	94.47
PTZ00490		143	Ferredoxin superfamily; Provisional	93.74
PRK11433		217	aldehyde oxidoreductase 2Fe-2S subunit; Provisiona	93.01
PRK07569		234	bidirectional hydrogenase complex protein HoxU; Va	92.75
PF13510		82	Fer2_4: 2Fe-2S iron-sulfur cluster binding domain;	92.08
PF13085		110	Fer2_3: 2Fe-2S iron-sulfur cluster binding domain;	91.56
PRK09908		159	xanthine dehydrogenase subunit XdhC; Provisional	91.44
cd06197		220	FNR_like_2 FAD/NAD(P) binding domain of ferredoxin	91.19
PRK08166		847	NADH dehydrogenase subunit G; Validated	89.99
cd06212		232	monooxygenase_like The oxygenase reductase FAD/NAD	89.79
cd06195		241	FNR1 Ferredoxin-NADP+ (oxido)reductase is an FAD-c	89.51
KOG0039		646	consensus Ferric reductase, NADH/NADPH oxidase and	88.54
cd06185		211	PDR_like Phthalate dioxygenase reductase (PDR) is	88.29
TIGR03193		148	4hydroxCoAred 4-hydroxybenzoyl-CoA reductase, gamm	86.94
PRK08051		232	fre FMN reductase; Validated	86.78
PRK12386		251	fumarate reductase iron-sulfur subunit; Provisiona	86.71
COG4097		438	Predicted ferric reductase [Inorganic ion transpor	86.57
COG0479		234	FrdB Succinate dehydrogenase/fumarate reductase, F	85.85
PRK13552		239	frdB fumarate reductase iron-sulfur subunit; Provi	85.84
PRK08640		249	sdhB succinate dehydrogenase iron-sulfur subunit;	85.76
PRK12385		244	fumarate reductase iron-sulfur subunit; Provisiona	85.58
TIGR00384		220	dhsB succinate dehydrogenase and fumarate reductas	85.51
PF00175		109	NAD_binding_1: Oxidoreductase NAD-binding domain ;	85.43
PRK07570		250	succinate dehydrogenase/fumarate reductase iron-su	85.23
cd06184		247	flavohem_like_fad_nad_binding FAD_NAD(P)H binding	83.81
cd06215		231	FNR_iron_sulfur_binding_1 Iron-sulfur binding ferr	83.72
TIGR03198		151	pucE xanthine dehydrogenase E subunit. This gene h	83.41
cd06188		283	NADH_quinone_reductase Na+-translocating NADH:quin	82.91
cd06209		228	BenDO_FAD_NAD Benzoate dioxygenase reductase (BenD	82.53
cd06198		216	FNR_like_3 NAD(P) binding domain of ferredoxin red	82.27
cd06189		224	flavin_oxioreductase NAD(P)H dependent flavin oxid	81.99
cd06210		236	MMO_FAD_NAD_binding Methane monooxygenase (MMO) re	81.87
PF00033		188	Cytochrom_B_N: Cytochrome b(N-terminal)/b6/petB; I	81.85
COG3894		614	Uncharacterized metal-binding protein [General fun	81.44
cd06217		235	FNR_iron_sulfur_binding_3 Iron-sulfur binding ferr	81.36

>PLN02844 oxidoreductase/ferric-chelate reductase	Back alignment and domain information

Probab=100.00  E-value=5.7e-99  Score=825.47  Aligned_cols=569  Identities=74%  Similarity=1.240  Sum_probs=485.4

Q ss_pred             ehhhhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhHHHHhCCCchhHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchhhH
Q 008159            6 CRWQLKYLRVATRFGLLAEACLALLLLPILRGLSLFRLLGIQFEASVRYHIWLGTAMIFFATIHGGSTLFVWGVSHHIQD   85 (575)
Q Consensus         6 ~~~~~~~~~~~~r~G~~a~~~~~ll~l~~~R~~~~~~~~g~~~~~~~~~Hr~~g~~~~~~~~~H~~~~~~~~~~~~~~~~   85 (575)
                      ..||.+|..+++|+|++|++|||++++|++||+++.+++|+|||+++.||||+|+++++++++|+++|++.|...+...+
T Consensus       146 ~~~~~~~~~va~R~G~la~~~Lpll~llv~Rnn~l~~ltGis~e~~i~fHrWlGr~~~llallH~i~~~i~w~~~~~~~~  225 (722)
T PLN02844        146 NLWQLKYLRVATRFGLLAEACLALLLLPVLRGLALFRLLGIQFEASVRYHVWLGTSMIFFATVHGASTLFIWGISHHIQD  225 (722)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhh
Confidence            47999999999999999999999999999999999999999999999999999999999999999999888877766666


Q ss_pred             HHHHHhhcccchhHHHHHHHHHHHHHHHcchHHhhhhhHHHHHHHHHHHHHHHHHHhhcCccchhHHHHHHHHHHHHHHH
Q 008159           86 EMWRWQKTGRIYLAGEIALVTGLVMWITSLPQIRRKKFEFFYYTHHLYIIFLIFFLFHAGDRHFYMVFGGIFLFGLDKLL  165 (575)
Q Consensus        86 ~~~~~~~~~~~~~~G~i~~~~~~~~~~~S~~~iRr~~ye~F~~~H~l~~~~~~~~~~H~~~~~~~~~~~~~~l~~~dr~~  165 (575)
                      +++.|..++..+++|+++++++++|+++|++++||+.||+|+++|++++++++++++|.+..++||++|++++|++||++
T Consensus       226 ~~~~w~~~~~~~~~G~IAlv~l~iL~itSl~~iRR~~YElF~~~H~L~ivflv~~~~H~~~~~~~~v~~~i~L~~~DRll  305 (722)
T PLN02844        226 EIWKWQKTGRIYLAGEIALVTGLVIWITSLPQIRRKRFEIFYYTHHLYIVFLIFFLFHAGDRHFYMVFPGIFLFGLDKLL  305 (722)
T ss_pred             hhhhhccCcchhhhHHHHHHHHHHHHHHhhHHHHhhhhHHHHHHHHHHHHHHHhhhHhhcCcchhhhHHHHHHHHHHHHh
Confidence            77888777777899999999999999999999999999999999999998999999999887778899999999999999


Q ss_pred             hhhhccCceeEEEEEEecCCeEEEEEecCCCCcccCCeEEEEEeCCCCCCccccCccccCCCCCCCcEEEEEEeCCCccH
Q 008159          166 RFIQSRPETCILSARVFPSKAIELILPKHAGLKFTPTSVIFMKIPSISKFQWHSFSITSSSSVDDQTMSLIVKCDGEWTS  245 (575)
Q Consensus       166 R~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~pGQ~v~l~~p~~~~~~~hpfSI~s~p~~~~~~l~l~Ik~~G~~T~  245 (575)
                      |++++++..++++++.++++++++++++++.++|+||||++|++|..++++||||||+|+|..+++.+++.||..|+||+
T Consensus       306 R~~~s~~~~~vvs~~~~~~~~v~l~i~r~~~~~f~PGQfV~L~vp~~s~~q~HPFSIaS~p~~~~~~l~~~IK~~gG~T~  385 (722)
T PLN02844        306 RIVQSRPETCILSARLFPCKAIELVLPKDPGLKYAPTSVIFMKIPSISRFQWHPFSITSSSNIDDHTMSVIIKCEGGWTN  385 (722)
T ss_pred             heEEEeeeEEEEEEEEecCCEEEEEEECCCCCCcCCCeeEEEEECCCCceeEEEEEeecCCCCCCCeEEEEEEeCCCchH
Confidence            99998877788899999999999999998889999999999999999999999999999875467789999999999999


Q ss_pred             HHHHHHHhcccCCcccCcceeEEEeCCCCCCCCCcCCCCeEEEEEeCCChhhHHHHHHHHHHhhccCCCCCCceEEEEEE
Q 008159          246 SLYQMIHAELDSDADQMRCIPVAIEGPYGPATMDFLRYDSLLLVAGGIGITPFLSILQEIASAQSNRKYRFPSKVQLIYV  325 (575)
Q Consensus       246 ~L~~~~~~~~~~~~~~~~g~~v~v~GPyG~~~~~~~~~~~vvlIagGiGITP~lsil~~l~~~~~~~~~~~~~~v~li~~  325 (575)
                      +|++.++...+.+.+.....++.|+||||.+..+..+++++++||||+||||++|+++++.+++. .+...+++++|+|+
T Consensus       386 ~L~~~i~~~l~~g~~~~~~~~v~VeGPYG~~s~~~~~~~~lVLIAGGiGITPfLSiLrdl~~~~~-~~~~~~~~V~LIw~  464 (722)
T PLN02844        386 SLYNKIQAELDSETNQMNCIPVAIEGPYGPASVDFLRYDSLLLVAGGIGITPFLSILKEIASQSS-SRYRFPKRVQLIYV  464 (722)
T ss_pred             HHHHHHHhhccCCCCcccceEEEEECCccCCCCCccCCCeEEEEEcCcCHHHHHHHHHHHHhccc-cccCCCCcEEEEEE
Confidence            99998764332211111125799999999987666678999999999999999999999987532 12233578999999


Q ss_pred             eCCcchhhhHHhHHHHhhhccCCCceeEEEEEEeCCCCCcchhhhhhchhhhhhhhccCC-CceeEEecCCchHHHHHHH
Q 008159          326 IKSSQEICLLNSISPLLSNQQSKKWHLTLKVFVTQEEQSSVTVREVLNDLSLVRAVRFGT-QSNYAVNGLESLIWMAALV  404 (575)
Q Consensus       326 ~r~~~~l~~~~~l~~~l~~~~~~~~~l~~~~~vT~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~vcGp~~~~~~~~v~  404 (575)
                      +|+.+|+.+.+++.+.+.+...+..++++++|+|||+.+....++.+++....+.++.++ .+.+.+|||+++.||+++.
T Consensus       465 vR~~~dL~~~del~~~l~~~~~~~~~lkl~iyVTRE~~~~~rl~~~i~~~~~~~~~~~~~~~~~~~i~G~~~~lw~~~~~  544 (722)
T PLN02844        465 VKKSQDICLLNPISSLLLNQSSNQLNLKLKVFVTQEEKPNATLRELLNQFSQVQTVNFSTKCSRYAIHGLESFLWMAAMV  544 (722)
T ss_pred             ECCHHHhhhHHHHHHHhHHhHHHhcCceEEEEECCCCCCCCchhhHhhccchhhhcCCCCCCCceEEeCCCchHHHHHHH
Confidence            999999999999876544322233578999999999875544555555544444455554 4779999999999999999


Q ss_pred             HHHHHHHHHHHHHhheEEecCCCcC-ccccccCCcccccccccCchhHHHHHHHHHHHHHhhhhhHHHHHHHHhhhhcCC
Q 008159          405 GITSILFVIFLISLNHIFVPVEKKL-PSEKLAAPSEKVVSKEKTPSWVADLIILSSFIIAITGSTLMAILLRWRRLKKQT  483 (575)
Q Consensus       405 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~sll~~l~~~g~~~~~~C~~G~C~~C~~~~~~g~v  483 (575)
                      ..+..+|+.+.+..++||+|.+++. ..++...++..+..+.+.+.|+.+.+..+++.+.++|++-+.....++..+++.
T Consensus       545 ~~s~~~f~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  624 (722)
T PLN02844        545 ALTSITFLVFLIGLNHIFIPSEHKSHSGVKMAASGEMKTAKEKTPSWVVDLLLIVSFIIAITCSTFVAIILRWRRLKKEI  624 (722)
T ss_pred             HHHHHHHHHHHHHHheEEeccccccccchhcccccccccccCCCchHHHHHHHHHHHHHHheecceEeEeeeccccccCC
Confidence            9999999999999999999988776 557777888888887788899999999999999999965555555677777766


Q ss_pred             CCCCcCCCcccc-----cCCCcceeeeeeecCCCChHHHHHHHHhhcCCceeEEEecCccchHHHHHHHhhhhhhhhhcc
Q 008159          484 PPVSLNQGKAVQ-----VLGPIEEEHEINFGGRPNFEEIFSELEKETAGSDIGVLVCGPESMKESVAKTSQRKSQCFMMN  558 (575)
Q Consensus       484 ~~~~~~~~~~~e-----~~~~~v~~~~v~fg~RPn~~~i~~~~~~~~~~~~vGV~~cGp~~l~~~v~~~c~~~~~~~~~~  558 (575)
                      +..+++..-+.+     ...+.++++++|||+|||++|||+++++++.|++|||+|||||+||++||++||++|+|+|++
T Consensus       625 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~rp~~~~i~~~~~~~~~~~~vgvlv~gp~~~~~~va~~~~~~~~~~~~~  704 (722)
T PLN02844        625 PRVSQKQGIKPEEGSMEKRGPVLEEHEIHFGGRPNFQDIFSKFPKETRGSDIGVLVCGPETMKESVASMCRLKSQCFNVG  704 (722)
T ss_pred             ccccccccCCCCCccccccccccccceeecCCCCCHHHHHHHhhhhccCCceeEEEeCchHHHHHHHHHHHhcccccccc
Confidence            654433332211     344566889999999999999999999999999999999999999999999999999999886


Q ss_pred             C-CCCCCceeeecccccC
Q 008159          559 A-NKDKPYFNFHSLNFTF  575 (575)
Q Consensus       559 ~-~~~~~~f~fhs~~f~~  575 (575)
                      + .+.++.|||||+||||
T Consensus       705 ~~~~~~~~~~~hs~~f~l  722 (722)
T PLN02844        705 DDGKRKMYFSFHSLNFTL  722 (722)
T ss_pred             cccccCCceeeeecccCC
Confidence            4 4447999999999997

>PLN02292 ferric-chelate reductase	Back alignment and domain information

>PLN02631 ferric-chelate reductase	Back alignment and domain information

>KOG0039 consensus Ferric reductase, NADH/NADPH oxidase and related proteins [Inorganic ion transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]	Back alignment and domain information

>COG4097 Predicted ferric reductase [Inorganic ion transport and metabolism]	Back alignment and domain information

>PRK10684 HCP oxidoreductase, NADH-dependent; Provisional	Back alignment and domain information

>TIGR02160 PA_CoA_Oxy5 phenylacetate-CoA oxygenase/reductase, PaaK subunit	Back alignment and domain information

>COG1018 Hmp Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 [Energy production and conversion]	Back alignment and domain information

>PRK08345 cytochrome-c3 hydrogenase subunit gamma; Provisional	Back alignment and domain information

>cd06221 sulfite_reductase_like Anaerobic sulfite reductase contains an FAD and NADPH binding module with structural similarity to ferredoxin reductase and sequence similarity to dihydroorotate dehydrogenases	Back alignment and domain information

>PRK08221 anaerobic sulfite reductase subunit B; Provisional	Back alignment and domain information

>PRK06222 ferredoxin-NADP(+) reductase subunit alpha; Reviewed	Back alignment and domain information

>cd06218 DHOD_e_trans FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase	Back alignment and domain information

>cd06192 DHOD_e_trans_like FAD/NAD binding domain (electron transfer subunit) of dihydroorotate dehydrogenase-like proteins	Back alignment and domain information

>PRK00054 dihydroorotate dehydrogenase electron transfer subunit; Reviewed	Back alignment and domain information

>cd06189 flavin_oxioreductase NAD(P)H dependent flavin oxidoreductases use flavin as a substrate in mediating electron transfer from iron complexes or iron proteins	Back alignment and domain information

>cd06219 DHOD_e_trans_like1 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins	Back alignment and domain information

>cd06215 FNR_iron_sulfur_binding_1 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain	Back alignment and domain information

>TIGR02911 sulfite_red_B sulfite reductase, subunit B	Back alignment and domain information

>cd06210 MMO_FAD_NAD_binding Methane monooxygenase (MMO) reductase of methanotrophs catalyzes the NADH-dependent hydroxylation of methane to methanol	Back alignment and domain information

>PRK08051 fre FMN reductase; Validated	Back alignment and domain information

>cd06216 FNR_iron_sulfur_binding_2 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain	Back alignment and domain information

>cd06190 T4MO_e_transfer_like Toluene-4-monoxygenase electron transfer component of Pseudomonas mendocina hydroxylates toluene and forms p-cresol as part of a three component toluene-4-monoxygenase system	Back alignment and domain information

>PRK11872 antC anthranilate dioxygenase reductase; Provisional	Back alignment and domain information

>cd06217 FNR_iron_sulfur_binding_3 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain	Back alignment and domain information

>cd06211 phenol_2-monooxygenase_like Phenol 2-monooxygenase (phenol hydroxylase) is a flavoprotein monooxygenase, able to use molecular oxygen as a substrate in the microbial degredation of phenol	Back alignment and domain information

>cd06213 oxygenase_e_transfer_subunit The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons	Back alignment and domain information

>cd06220 DHOD_e_trans_like2 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins	Back alignment and domain information

>cd06188 NADH_quinone_reductase Na+-translocating NADH:quinone oxidoreductase (Na+-NQR) FAD/NADH binding domain	Back alignment and domain information

>cd06191 FNR_iron_sulfur_binding Iron-sulfur binding Ferredoxin Reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with a C-terminal iron-sulfur binding cluster domain	Back alignment and domain information

>PRK05802 hypothetical protein; Provisional	Back alignment and domain information

>PRK07609 CDP-6-deoxy-delta-3,4-glucoseen reductase; Validated	Back alignment and domain information

>cd06212 monooxygenase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons	Back alignment and domain information

>cd06195 FNR1 Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin	Back alignment and domain information

>cd06187 O2ase_reductase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons using oxygen as the oxidant	Back alignment and domain information

>cd06209 BenDO_FAD_NAD Benzoate dioxygenase reductase (BenDO) FAD/NAD binding domain	Back alignment and domain information

>cd06184 flavohem_like_fad_nad_binding FAD_NAD(P)H binding domain of flavohemoglobin	Back alignment and domain information

>cd00322 FNR_like Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I	Back alignment and domain information

>cd06186 NOX_Duox_like_FAD_NADP NADPH oxidase (NOX) catalyzes the generation of reactive oxygen species (ROS) such as superoxide and hydrogen peroxide	Back alignment and domain information

>cd06196 FNR_like_1 Ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which varies in orientation with respect to the NAD(P) binding domain	Back alignment and domain information

>cd06194 FNR_N-term_Iron_sulfur_binding Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an N-terminal Iron-Sulfur binding cluster domain	Back alignment and domain information

>cd06198 FNR_like_3 NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) domain, which varies in orientation with respect to the NAD(P) binding domain	Back alignment and domain information

>cd06183 cyt_b5_reduct_like Cytochrome b5 reductase catalyzes the reduction of 2 molecules of cytochrome b5 using NADH as an electron donor	Back alignment and domain information

>cd06214 PA_degradation_oxidoreductase_like NAD(P) binding domain of ferredoxin reductase like phenylacetic acid (PA) degradation oxidoreductase	Back alignment and domain information

>cd06197 FNR_like_2 FAD/NAD(P) binding domain of ferredoxin reductase-like proteins	Back alignment and domain information

>PRK10926 ferredoxin-NADP reductase; Provisional	Back alignment and domain information

>PLN03116 ferredoxin--NADP+ reductase; Provisional	Back alignment and domain information

>PRK13289 bifunctional nitric oxide dioxygenase/dihydropteridine reductase 2; Provisional	Back alignment and domain information

>PTZ00274 cytochrome b5 reductase; Provisional	Back alignment and domain information

>cd06208 CYPOR_like_FNR These ferredoxin reductases are related to the NADPH cytochrome p450 reductases (CYPOR), but lack the FAD-binding region connecting sub-domain	Back alignment and domain information

>PRK05464 Na(+)-translocating NADH-quinone reductase subunit F; Provisional	Back alignment and domain information

>PLN03115 ferredoxin--NADP(+) reductase; Provisional	Back alignment and domain information

>PRK05713 hypothetical protein; Provisional	Back alignment and domain information

>PTZ00319 NADH-cytochrome B5 reductase; Provisional	Back alignment and domain information

>cd06200 SiR_like1 Cytochrome p450- like alpha subunits of E	Back alignment and domain information

>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional	Back alignment and domain information

>TIGR01941 nqrF NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit	Back alignment and domain information

>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional	Back alignment and domain information

>cd06182 CYPOR_like NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases	Back alignment and domain information

>TIGR03224 benzo_boxA benzoyl-CoA oxygenase/reductase, BoxA protein	Back alignment and domain information

>cd06185 PDR_like Phthalate dioxygenase reductase (PDR) is an FMN-dependent reductase that mediates electron transfer from NADH to FMN to an iron sulfur cluster	Back alignment and domain information

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional	Back alignment and domain information

>cd06201 SiR_like2 Cytochrome p450- like alpha subunits of E	Back alignment and domain information

>COG0543 UbiB 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases [Coenzyme metabolism / Energy production and conversion]	Back alignment and domain information

>PLN02252 nitrate reductase [NADPH]	Back alignment and domain information

>KOG0534 consensus NADH-cytochrome b-5 reductase [Coenzyme transport and metabolism; Energy production and conversion]	Back alignment and domain information

>cd06193 siderophore_interacting Siderophore interacting proteins share the domain structure of the ferredoxin reductase like family	Back alignment and domain information

>PTZ00306 NADH-dependent fumarate reductase; Provisional	Back alignment and domain information

>PF08030 NAD_binding_6: Ferric reductase NAD binding domain; InterPro: IPR013121 This entry contains ferric reductase NAD binding proteins	Back alignment and domain information

>cd06199 SiR Cytochrome p450- like alpha subunits of E	Back alignment and domain information

>TIGR01931 cysJ sulfite reductase [NADPH] flavoprotein, alpha-component	Back alignment and domain information

>cd06206 bifunctional_CYPOR These bifunctional proteins fuse N-terminal cytochrome p450 with a cytochrome p450 reductase (CYPOR)	Back alignment and domain information

>cd06207 CyPoR_like NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases	Back alignment and domain information

>PRK06214 sulfite reductase; Provisional	Back alignment and domain information

>PRK10953 cysJ sulfite reductase subunit alpha; Provisional	Back alignment and domain information

>cd06203 methionine_synthase_red Human methionine synthase reductase (MSR) restores methionine sythase which is responsible for the regeneration of methionine from homocysteine, as well as the coversion of methyltetrahydrofolate to tetrahydrofolate	Back alignment and domain information

>PF01794 Ferric_reduct: Ferric reductase like transmembrane component; InterPro: IPR013130 This family includes a common region in the transmembrane proteins mammalian cytochrome b-245 heavy chain (gp91-phox), ferric reductase transmembrane component in yeast and respiratory burst oxidase from Arabidopsis thaliana	Back alignment and domain information

>cd06204 CYPOR NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases	Back alignment and domain information

>PF08022 FAD_binding_8: FAD-binding domain; InterPro: IPR013112 This FAD binding domain is associated with ferric reductase NAD binding proteins and the heavy chain of Cytochrome b-245	Back alignment and domain information

>COG2871 NqrF Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrF [Energy production and conversion]	Back alignment and domain information

>cd06202 Nitric_oxide_synthase The ferredoxin-reductase (FNR) like C-terminal domain of the nitric oxide synthase (NOS) fuses with a heme-containing N-terminal oxidase domain	Back alignment and domain information

>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated	Back alignment and domain information

>PF00175 NAD_binding_1: Oxidoreductase NAD-binding domain ; InterPro: IPR001433 Bacterial ferredoxin-NADP+ reductase may be bound to the thylakoid membrane or anchored to the thylakoid-bound phycobilisomes	Back alignment and domain information

>COG0369 CysJ Sulfite reductase, alpha subunit (flavoprotein) [Inorganic ion transport and metabolism]	Back alignment and domain information

>KOG3378 consensus Globins and related hemoproteins [Energy production and conversion]	Back alignment and domain information

>PF00970 FAD_binding_6: Oxidoreductase FAD-binding domain; InterPro: IPR008333 These sequences contain an oxidoreductase FAD-binding domain	Back alignment and domain information

>KOG1158 consensus NADP/FAD dependent oxidoreductase [Energy production and conversion]	Back alignment and domain information

>PRK05419 putative sulfite oxidase subunit YedZ; Reviewed	Back alignment and domain information

>KOG1159 consensus NADP-dependent flavoprotein reductase [Energy production and conversion]	Back alignment and domain information

>PRK10713 2Fe-2S ferredoxin YfaE; Provisional	Back alignment and domain information

>CHL00134 petF ferredoxin; Validated	Back alignment and domain information

>TIGR02008 fdx_plant ferredoxin [2Fe-2S]	Back alignment and domain information

>PLN03136 Ferredoxin; Provisional	Back alignment and domain information

>PTZ00038 ferredoxin; Provisional	Back alignment and domain information

>COG2717 Predicted membrane protein [Function unknown]	Back alignment and domain information

>cd00207 fer2 2Fe-2S iron-sulfur cluster binding domain	Back alignment and domain information

>PF00111 Fer2: 2Fe-2S iron-sulfur cluster binding domain; InterPro: IPR001041 The ferredoxin protein family are electron carrier proteins with an iron-sulphur cofactor that act in a wide variety of metabolic reactions	Back alignment and domain information

>PRK07609 CDP-6-deoxy-delta-3,4-glucoseen reductase; Validated	Back alignment and domain information

>COG0633 Fdx Ferredoxin [Energy production and conversion]	Back alignment and domain information

>COG2375 ViuB Siderophore-interacting protein [Inorganic ion transport and metabolism]	Back alignment and domain information

>PRK11872 antC anthranilate dioxygenase reductase; Provisional	Back alignment and domain information

>PRK05713 hypothetical protein; Provisional	Back alignment and domain information

>TIGR02007 fdx_isc ferredoxin, 2Fe-2S type, ISC system	Back alignment and domain information

>PRK05464 Na(+)-translocating NADH-quinone reductase subunit F; Provisional	Back alignment and domain information

>TIGR01941 nqrF NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit	Back alignment and domain information

>PF08021 FAD_binding_9: Siderophore-interacting FAD-binding domain; InterPro: IPR013113 Proteins in this entry are siderophore-interacting FAD-binding proteins	Back alignment and domain information

>PLN02593 adrenodoxin-like ferredoxin protein	Back alignment and domain information

>COG2871 NqrF Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrF [Energy production and conversion]	Back alignment and domain information

>cd06186 NOX_Duox_like_FAD_NADP NADPH oxidase (NOX) catalyzes the generation of reactive oxygen species (ROS) such as superoxide and hydrogen peroxide	Back alignment and domain information

>PTZ00490 Ferredoxin superfamily; Provisional	Back alignment and domain information

>PRK11433 aldehyde oxidoreductase 2Fe-2S subunit; Provisional	Back alignment and domain information

>PRK07569 bidirectional hydrogenase complex protein HoxU; Validated	Back alignment and domain information

>PF13510 Fer2_4: 2Fe-2S iron-sulfur cluster binding domain; PDB: 1Y56_A 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A	Back alignment and domain information

>PF13085 Fer2_3: 2Fe-2S iron-sulfur cluster binding domain; PDB: 3P4Q_N 1KFY_N 3CIR_N 3P4R_B 2B76_N 1KF6_B 3P4P_N 3P4S_B 1L0V_B 1ZOY_B	Back alignment and domain information

>PRK09908 xanthine dehydrogenase subunit XdhC; Provisional	Back alignment and domain information

>cd06197 FNR_like_2 FAD/NAD(P) binding domain of ferredoxin reductase-like proteins	Back alignment and domain information

>PRK08166 NADH dehydrogenase subunit G; Validated	Back alignment and domain information

>cd06212 monooxygenase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons	Back alignment and domain information

>cd06195 FNR1 Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin	Back alignment and domain information

>KOG0039 consensus Ferric reductase, NADH/NADPH oxidase and related proteins [Inorganic ion transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]	Back alignment and domain information

>cd06185 PDR_like Phthalate dioxygenase reductase (PDR) is an FMN-dependent reductase that mediates electron transfer from NADH to FMN to an iron sulfur cluster	Back alignment and domain information

>TIGR03193 4hydroxCoAred 4-hydroxybenzoyl-CoA reductase, gamma subunit	Back alignment and domain information

>PRK08051 fre FMN reductase; Validated	Back alignment and domain information

>PRK12386 fumarate reductase iron-sulfur subunit; Provisional	Back alignment and domain information

>COG4097 Predicted ferric reductase [Inorganic ion transport and metabolism]	Back alignment and domain information

>COG0479 FrdB Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit [Energy production and conversion]	Back alignment and domain information

>PRK13552 frdB fumarate reductase iron-sulfur subunit; Provisional	Back alignment and domain information

>PRK08640 sdhB succinate dehydrogenase iron-sulfur subunit; Reviewed	Back alignment and domain information

>PRK12385 fumarate reductase iron-sulfur subunit; Provisional	Back alignment and domain information

>TIGR00384 dhsB succinate dehydrogenase and fumarate reductase iron-sulfur protein	Back alignment and domain information

>PF00175 NAD_binding_1: Oxidoreductase NAD-binding domain ; InterPro: IPR001433 Bacterial ferredoxin-NADP+ reductase may be bound to the thylakoid membrane or anchored to the thylakoid-bound phycobilisomes	Back alignment and domain information

>PRK07570 succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Validated	Back alignment and domain information

>cd06184 flavohem_like_fad_nad_binding FAD_NAD(P)H binding domain of flavohemoglobin	Back alignment and domain information

>cd06215 FNR_iron_sulfur_binding_1 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain	Back alignment and domain information

>TIGR03198 pucE xanthine dehydrogenase E subunit	Back alignment and domain information

>cd06188 NADH_quinone_reductase Na+-translocating NADH:quinone oxidoreductase (Na+-NQR) FAD/NADH binding domain	Back alignment and domain information

>cd06209 BenDO_FAD_NAD Benzoate dioxygenase reductase (BenDO) FAD/NAD binding domain	Back alignment and domain information

>cd06198 FNR_like_3 NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) domain, which varies in orientation with respect to the NAD(P) binding domain	Back alignment and domain information

>cd06189 flavin_oxioreductase NAD(P)H dependent flavin oxidoreductases use flavin as a substrate in mediating electron transfer from iron complexes or iron proteins	Back alignment and domain information

>cd06210 MMO_FAD_NAD_binding Methane monooxygenase (MMO) reductase of methanotrophs catalyzes the NADH-dependent hydroxylation of methane to methanol	Back alignment and domain information

>PF00033 Cytochrom_B_N: Cytochrome b(N-terminal)/b6/petB; InterPro: IPR016174 This entry represents a haem-binding domain with a 4-helical bundle structure that is found in transmembrane di-haem cytochromes	Back alignment and domain information

>COG3894 Uncharacterized metal-binding protein [General function prediction only]	Back alignment and domain information

>cd06217 FNR_iron_sulfur_binding_3 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		575
3a1f_A		186	The Crystal Structure Of Nadph Binding Domain Of Gp		2e-06

>pdb|3A1F|A Chain A, The Crystal Structure Of Nadph Binding Domain Of Gp91(Phox) Length = 186

Back alignment and structure

Iteration: 1

Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 28/112 (25%), Positives = 56/112 (50%), Gaps = 4/112 (3%) Query: 267 VAIEGPYGPATMDFLRYDSLLLVAGGIGITPFLSILQEIASAQSNRKYRFP-SKVQLIYV 325 +A++GP+G A+ D Y+ ++LV GIG+TPF SIL+ + N K+ ++ Sbjct: 1 IAVDGPFGTASEDVFSYEVVMLVGAGIGVTPFASILKSVWYKYCNNATNLKLKKIYFYWL 60 Query: 326 IKSSQEICLLNSISPLLSNQQSKKWH---LTLKVFVTQEEQSSVTVREVLND 374 + + + LL +Q ++ + L+ +++T ++S V +D Sbjct: 61 CRDTHAFEWFADLLQLLESQMQERNNAGFLSYNIYLTGWDESQANHFAVHHD 112

PyMOL of 3a1f

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		575
3a1f_A		186	Cytochrome B-245 heavy chain; GP91(PHOX), NADPH bi	8e-19
3a1f_A		186	Cytochrome B-245 heavy chain; GP91(PHOX), NADPH bi	4e-09
1tvc_A		250	Methane monooxygenase component C, methane monooxy	6e-09
1qfj_A		232	Protein (flavin reductase); riboflavin, ferredoxin	6e-09
1krh_A		338	Benzoate 1,2-dioxygenase reductase; alpha-beta, FA	1e-08
1gvh_A		396	Flavohemoprotein; oxidoreductase, NADP, heme, flav	4e-08
1cqx_A		403	Flavohemoprotein; globin fold, six-stranded antipa	2e-06
2qdx_A		257	Ferredoxin reductase; oxidoreductase; HET: FAD; 1.	3e-06
2eix_A		243	NADH-cytochrome B5 reductase; flavoprotein, FAD-bi	8e-06
1fdr_A		248	Flavodoxin reductase; ferredoxin reductase, flavin	1e-05
2pia_A		321	Phthalate dioxygenase reductase; HET: FMN; 2.00A {	2e-05
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-05
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04
2bgi_A		272	Ferredoxin-NADP(H) reductase; ferredoxin(flavodoxi	4e-05
4eh1_A		243	Flavohemoprotein; structural genomics, niaid, nati	4e-05
2cnd_A		270	NADH-dependent nitrate reductase; nitrate assimila	8e-05
1umk_A		275	B5R, NADH-cytochrome B5 reductase; flavoprotein, b	1e-04
3lrx_A		158	Putative hydrogenase; alpha-beta protein, structur	5e-04
4fk8_A		271	Ferredoxin--NADP reductase; ssgcid, NIH, niaid, st	6e-04
3lyu_A		142	Putative hydrogenase; the C-terminal has AN alpha-	7e-04

>3a1f_A Cytochrome B-245 heavy chain; GP91(PHOX), NADPH binding domain, oxidoreductase; 2.00A {Homo sapiens} Length = 186	Back alignment and structure

 Score = 83.6 bits (206), Expect = 8e-19
 Identities = 29/136 (21%), Positives = 61/136 (44%), Gaps = 4/136 (2%)

Query: 267 VAIEGPYGPATMDFLRYDSLLLVAGGIGITPFLSILQEIASAQSNRKYRF-PSKVQLIYV 325
           +A++GP+G A+ D   Y+ ++LV  GIG+TPF SIL+ +     N        K+   ++
Sbjct: 1   IAVDGPFGTASEDVFSYEVVMLVGAGIGVTPFASILKSVWYKYCNNATNLKLKKIYFYWL 60

Query: 326 IKSSQEICLLNSISPLLSNQQSKKWH---LTLKVFVTQEEQSSVTVREVLNDLSLVRAVR 382
            + +        +  LL +Q  ++ +   L+  +++T  ++S      V +D        
Sbjct: 61  CRDTHAFEWFADLLQLLESQMQERNNAGFLSYNIYLTGWDESQANHFAVHHDEEKDVITG 120

Query: 383 FGTQSNYAVNGLESLI 398
              ++ Y     ++  
Sbjct: 121 LKQKTLYGRPNWDNEF 136

PyMOL of 3a1f

>3a1f_A Cytochrome B-245 heavy chain; GP91(PHOX), NADPH binding domain, oxidoreductase; 2.00A {Homo sapiens} Length = 186	Back alignment and structure

>1tvc_A Methane monooxygenase component C, methane monooxygenase; FAD-binding, NADH-binding, oxidoreductase; HET: FDA; NMR {Methylococcus capsulatus} SCOP: b.43.4.2 c.25.1.2 Length = 250	Back alignment and structure

>1qfj_A Protein (flavin reductase); riboflavin, ferredoxin reductase superfami oxidoreductase; 2.20A {Escherichia coli} SCOP: b.43.4.2 c.25.1.1 Length = 232	Back alignment and structure

>1krh_A Benzoate 1,2-dioxygenase reductase; alpha-beta, FAD-binding, ferredoxin, NADH-binding, oxidoreductase; HET: FAD; 1.50A {Acinetobacter SP} SCOP: b.43.4.2 c.25.1.2 d.15.4.2 Length = 338	Back alignment and structure

>1gvh_A Flavohemoprotein; oxidoreductase, NADP, heme, flavoprotein, FAD, iron transpor; HET: FAD HEM; 2.19A {Escherichia coli} SCOP: a.1.1.2 b.43.4.2 c.25.1.5 Length = 396	Back alignment and structure

>1cqx_A Flavohemoprotein; globin fold, six-stranded antiparallel beta sheet, helix-FLA five-stranded parallel beta sheet, lipid binding protein; HET: HEM FAD DGG; 1.75A {Cupriavidus necator} SCOP: a.1.1.2 b.43.4.2 c.25.1.5 PDB: 3ozu_A* 3ozv_B* 3ozw_A* Length = 403	Back alignment and structure

>2qdx_A Ferredoxin reductase; oxidoreductase; HET: FAD; 1.55A {Pseudomonas aeruginosa} PDB: 3crz_A* 1a8p_A* Length = 257	Back alignment and structure

>2eix_A NADH-cytochrome B5 reductase; flavoprotein, FAD-binding domain, NADH-binding, oxidoreducta; HET: FAD; 1.56A {Physarum polycephalum} Length = 243	Back alignment and structure

>1fdr_A Flavodoxin reductase; ferredoxin reductase, flavin, oxidoreductase, flavoprotein; HET: FAD; 1.70A {Escherichia coli} SCOP: b.43.4.2 c.25.1.1 PDB: 2xnj_A* 3fpk_A* Length = 248	Back alignment and structure

>2pia_A Phthalate dioxygenase reductase; HET: FMN; 2.00A {Burkholderia cepacia} SCOP: b.43.4.2 c.25.1.2 d.15.4.2 Length = 321	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>2bgi_A Ferredoxin-NADP(H) reductase; ferredoxin(flavodoxin)-NADP(H) reductase, flavoproteins, electron transfer, oxidoreductase; HET: FAD HTG; 1.68A {Rhodobacter capsulatus} PDB: 2bgj_A* 2vnh_A* 2vni_A* 2vnj_A* 2vnk_A* Length = 272	Back alignment and structure

>4eh1_A Flavohemoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: FAD; 2.20A {Vibrio cholerae o1 biovar el tor} Length = 243	Back alignment and structure

>2cnd_A NADH-dependent nitrate reductase; nitrate assimilating enzyme, oxidoreductase, nitrogenous acceptor; HET: FAD; 2.50A {Zea mays} SCOP: b.43.4.2 c.25.1.1 PDB: 1cnf_A* 1cne_A* Length = 270	Back alignment and structure

>1umk_A B5R, NADH-cytochrome B5 reductase; flavoprotein, beta barrel, FAD-binding domain, NADH-binding domain, oxidoreductase; HET: FAD; 1.75A {Homo sapiens} SCOP: b.43.4.2 c.25.1.1 PDB: 1ndh_A* 1i7p_A* 1ib0_A* 1qx4_A* Length = 275	Back alignment and structure

>3lrx_A Putative hydrogenase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.60A {Pyrococcus furiosus} Length = 158	Back alignment and structure

>4fk8_A Ferredoxin--NADP reductase; ssgcid, NIH, niaid, structural genomics, national institute allergy and infectious diseases; HET: FAD; 2.10A {Burkholderia thailandensis} PDB: 4f7d_A* Length = 271	Back alignment and structure

>3lyu_A Putative hydrogenase; the C-terminal has AN alpha-beta fold, structural genomics, PSI-2, protein structure initiative; 2.30A {Pyrococcus furiosus} Length = 142	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		575
2pia_A		321	Phthalate dioxygenase reductase; HET: FMN; 2.00A {	100.0
1qfj_A		232	Protein (flavin reductase); riboflavin, ferredoxin	99.97
4eh1_A		243	Flavohemoprotein; structural genomics, niaid, nati	99.97
1tvc_A		250	Methane monooxygenase component C, methane monooxy	99.97
1ep3_B		262	Dihydroorotate dehydrogenase B (PYRK subunit); het	99.97
2eix_A		243	NADH-cytochrome B5 reductase; flavoprotein, FAD-bi	99.97
3lo8_A		311	Ferredoxin--NADP reductase; electron transport, ox	99.97
3vo2_A		310	Putative uncharacterized protein; rossmann fold, o	99.97
1fdr_A		248	Flavodoxin reductase; ferredoxin reductase, flavin	99.96
3jqq_A		316	Ferredoxin NADP reductase; FAD, oxidoreductase; HE	99.96
1umk_A		275	B5R, NADH-cytochrome B5 reductase; flavoprotein, b	99.96
1krh_A		338	Benzoate 1,2-dioxygenase reductase; alpha-beta, FA	99.96
4fk8_A		271	Ferredoxin--NADP reductase; ssgcid, NIH, niaid, st	99.96
4g1v_A		399	Flavohemoglobin; three domains: globin fold, antip	99.96
2r6h_A		290	NADH:ubiquinone oxidoreductase, Na translocating,	99.96
1gvh_A		396	Flavohemoprotein; oxidoreductase, NADP, heme, flav	99.96
1cqx_A		403	Flavohemoprotein; globin fold, six-stranded antipa	99.96
1fnb_A		314	Ferredoxin-NADP+ reductase; oxidoreductase (NADP+(	99.96
2qdx_A		257	Ferredoxin reductase; oxidoreductase; HET: FAD; 1.	99.95
2cnd_A		270	NADH-dependent nitrate reductase; nitrate assimila	99.95
2bgi_A		272	Ferredoxin-NADP(H) reductase; ferredoxin(flavodoxi	99.95
2bmw_A		304	Ferredoxin--NADP reductase; oxidoreductase, flavop	99.95
2b5o_A		402	FNR, ferredoxin--NADP reductase; complex with FAD,	99.95
2rc5_A		314	Ferredoxin-NADP reductase; FAD, oxidoreductase; HE	99.94
1ddg_A		374	Sulfite reductase (NADPH) flavoprotein alpha- comp	99.89
3a1f_A		186	Cytochrome B-245 heavy chain; GP91(PHOX), NADPH bi	99.88
2gpj_A		252	Siderophore-interacting protein; structural genomi	99.87
4dql_A		393	Bifunctional P-450/NADPH-P450 reductase; rossmann	99.83
2qtl_A		539	MSR;, methionine synthase reductase; alpha-beta-al	99.82
1f20_A		435	Nitric-oxide synthase; nitric-xoide synthase, redu	99.8
2bpo_A		682	CPR, P450R, NADPH-cytochrom P450 reductase; NADPH-	99.79
1tll_A		688	Nitric-oxide synthase, brain; reductase module, FM	99.78
3qfs_A		458	CPR, P450R, NADPH--cytochrome P450 reductase; flav	99.77
3qe2_A		618	CPR, P450R, NADPH--cytochrome P450 reductase; cypo	99.75
3lrx_A		158	Putative hydrogenase; alpha-beta protein, structur	99.71
3lyu_A		142	Putative hydrogenase; the C-terminal has AN alpha-	99.71
1awd_A		94	Ferredoxin; electron transport, eukaryotic, green	98.15
1frd_A		98	Heterocyst [2Fe-2S] ferredoxin; electron transport	98.14
1iue_A		98	Ferredoxin; electron transport, iron-sulfur; 1.70A	98.13
1doi_A		128	2Fe-2S ferredoxin; halophilic protein, redox prote	98.11
1frr_A		95	Ferredoxin I; electron transfer(iron-sulfur protei	98.1
1jq4_A		98	Methane monooxygenase component C; [2Fe-2S] ferred	98.09
1wri_A		93	Ferredoxin II, ferredoxin; electron transport; 1.2	98.07
1a70_A		97	Ferredoxin; iron-sulfur protein, photosynthesis, e	98.06
1czp_A		98	Ferredoxin I; [2Fe-2S] protein, crystal reduced wi	98.04
1l5p_A		93	Ferredoxin; [2Fe-2S] cluster, electron transfer, i	97.75
2wlb_A		103	ETP1-FD, electron transfer protein 1, mitochondria	97.72
1xlq_A		106	Putidaredoxin, PDX; [2Fe-2S], ferredoxin, oxidored	97.71
1i7h_A		111	Ferredoxin; 2Fe-2S,electron transport; 1.70A {Esch	97.69
1uwm_A		106	Ferredoxin VI, FDVI; electron transport, metal-bin	97.66
2y5c_A		109	Adrenodoxin-like protein, mitochondrial; electron	97.61
3lxf_A		104	Ferredoxin; iron, iron-sulfur, metal-binding, meta	97.58
1b9r_A		105	Protein (terpredoxin); structure from molmol, ferr	97.56
2bt6_A		108	Adrenodoxin 1; ruthenium(II) bipyridyl complex, in	97.53
3zyy_X		631	Iron-sulfur cluster binding protein; iron-sulfur-b	97.47
3ah7_A		113	[2Fe-2S]ferredoxin; [2Fe-2S] cluster, iron-sulfur	97.45
3hui_A		126	Ferredoxin; cytochrome P450, electron transfer, ir	97.39
1krh_A		338	Benzoate 1,2-dioxygenase reductase; alpha-beta, FA	97.28
3n9z_C		123	Adrenodoxin; cytochrome P450, 22-hydroxycholestero	96.78
1t3q_A		168	Quinoline 2-oxidoreductase small subunit; QOR, mol	95.61
3hrd_D		160	Nicotinate dehydrogenase small FES subunit; seleni	91.25
1rm6_C		161	4-hydroxybenzoyl-COA reductase gamma subunit; xant	90.84
1ffv_A		163	CUTS, iron-sulfur protein of carbon monoxide dehyd	90.39
2bs2_B		241	Quinol-fumarate reductase iron-sulfur subunit B; 2	89.45
1n62_A		166	Carbon monoxide dehydrogenase small chain; CODH, m	89.37
2pia_A		321	Phthalate dioxygenase reductase; HET: FMN; 2.00A {	88.05
4eh1_A		243	Flavohemoprotein; structural genomics, niaid, nati	87.39
4g1v_A		399	Flavohemoglobin; three domains: globin fold, antip	86.64
4fk8_A		271	Ferredoxin--NADP reductase; ssgcid, NIH, niaid, st	86.1
3lyu_A		142	Putative hydrogenase; the C-terminal has AN alpha-	85.66
2wdq_B		238	Succinate dehydrogenase iron-sulfur subunit; succi	84.86
1qfj_A		232	Protein (flavin reductase); riboflavin, ferredoxin	84.76
1tvc_A		250	Methane monooxygenase component C, methane monooxy	83.78
1kf6_B		243	Fumarate reductase iron-sulfur protein; respiratio	83.68
3i9v_3		783	NADH-quinone oxidoreductase subunit 3; electron tr	81.66
3lrx_A		158	Putative hydrogenase; alpha-beta protein, structur	80.77

>2pia_A Phthalate dioxygenase reductase; HET: FMN; 2.00A {Burkholderia cepacia} SCOP: b.43.4.2 c.25.1.2 d.15.4.2	Back alignment and structure

Probab=100.00  E-value=1.3e-38  Score=326.68  Aligned_cols=278  Identities=13%  Similarity=0.150  Sum_probs=213.9

Q ss_pred             ceeEEEEEEecCCeEEEEEecCCC---CcccCCeEEEEEeCCCCCCccccCccccCCCCCCCcEEEEEEeC--CC-ccHH
Q 008159          173 ETCILSARVFPSKAIELILPKHAG---LKFTPTSVIFMKIPSISKFQWHSFSITSSSSVDDQTMSLIVKCD--GE-WTSS  246 (575)
Q Consensus       173 ~~~v~~~~~~~~~~~~l~~~~~~~---~~~~pGQ~v~l~~p~~~~~~~hpfSI~s~p~~~~~~l~l~Ik~~--G~-~T~~  246 (575)
                      ..+|++++.++++++++++..+..   ..|+||||+.|++|..   ++|||||+|.|. +++.++|.||+.  |. +|++
T Consensus        10 ~~~V~~~~~~t~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~g---~~R~ySi~s~~~-~~~~l~i~Vk~~~~G~g~S~~   85 (321)
T 2pia_A           10 RLKIASKEKIARDIWSFELTDPQGAPLPPFEAGANLTVAVPNG---SRRTYSLCNDSQ-ERNRYVIAVKRDSNGRGGSIS   85 (321)
T ss_dssp             EEEEEEEEEEETTEEEEEEECTTCCCCCCCCTTCEEEEECTTS---CEEEEECCSCTT-CCSEEEEEEECCTTSCSHHHH
T ss_pred             EEEEEEEEEcCCCEEEEEEEcCCCCcCCCCCCCCEEEEECCCC---CcEEEEeCCCCC-CCCeEEEEEEEecCCcchhHH
Confidence            467899999999999999987653   4899999999999853   899999999986 567899999974  65 8999


Q ss_pred             HHHHHHhcccCCcccCcceeEEEeCCCCCCCCCcCCCCeEEEEEeCCChhhHHHHHHHHHHhhccCCCCCCceEEEEEEe
Q 008159          247 LYQMIHAELDSDADQMRCIPVAIEGPYGPATMDFLRYDSLLLVAGGIGITPFLSILQEIASAQSNRKYRFPSKVQLIYVI  326 (575)
Q Consensus       247 L~~~~~~~~~~~~~~~~g~~v~v~GPyG~~~~~~~~~~~vvlIagGiGITP~lsil~~l~~~~~~~~~~~~~~v~li~~~  326 (575)
                      |++.++          +|+.+.|.||+|.|.++. .+++++||||||||||++||++++...+       ..+++|+|++
T Consensus        86 L~~~l~----------~Gd~v~v~gP~g~f~l~~-~~~~~vliagG~GItP~~s~l~~l~~~~-------~~~v~l~~~~  147 (321)
T 2pia_A           86 FIDDTS----------EGDAVEVSLPRNEFPLDK-RAKSFILVAGGIGITPMLSMARQLRAEG-------LRSFRLYYLT  147 (321)
T ss_dssp             HHHSCC----------TTCEEEECCCBCCSCCCT-TCSEEEEEEEGGGHHHHHHHHHHHHHHC-------SSEEEEEEEE
T ss_pred             HHhcCC----------CCCEEEEeCCccccccCC-CCCCEEEEEecccHhHHHHHHHHHHHcC-------CCcEEEEEEE
Confidence            997666          799999999999987653 4789999999999999999999998752       2789999999


Q ss_pred             CCcchhhhHHhHHHHhhhccCCCceeEEEEEEeCCCCCcchhhhhhchhhhhhhhccCCCceeEEecCCchHHHHHHHHH
Q 008159          327 KSSQEICLLNSISPLLSNQQSKKWHLTLKVFVTQEEQSSVTVREVLNDLSLVRAVRFGTQSNYAVNGLESLIWMAALVGI  406 (575)
Q Consensus       327 r~~~~l~~~~~l~~~l~~~~~~~~~l~~~~~vT~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vcGp~~~~~~~~v~~~  406 (575)
                      |+.+++.|.+++.++.     ...++++  +.++++..   .+..+.+..  .  ...+...+|+|||.+  ||+++.+.
T Consensus       148 r~~~~~~~~~el~~l~-----~~~~~~~--~~~~~~~~---g~~~~~~ll--~--~~~~~~~vyvCGP~~--m~~~v~~~  211 (321)
T 2pia_A          148 RDPEGTAFFDELTSDE-----WRSDVKI--HHDHGDPT---KAFDFWSVF--E--KSKPAQHVYCCGPQA--LMDTVRDM  211 (321)
T ss_dssp             SCGGGCTTHHHHHSTT-----TTTTEEE--EECTTCTT---SCCCHHHHH--S--SCCTTEEEEEESCHH--HHHHHHHH
T ss_pred             CChhhhHHHHHHhcCc-----cCCeEEE--EECCCccc---CccCHHHHh--c--ccCCCCEEEEECCHH--HHHHHHHH
Confidence            9999999999987642     1234444  44443211   011111111  1  112346799999999  99999887


Q ss_pred             HHHHHHHHHHHhheE--EecCC---CcCccccccCCcccccccccCchhHHHHHHHHHHHHHhhhhhHHHHHHHHhhhhc
Q 008159          407 TSILFVIFLISLNHI--FVPVE---KKLPSEKLAAPSEKVVSKEKTPSWVADLIILSSFIIAITGSTLMAILLRWRRLKK  481 (575)
Q Consensus       407 ~~~~~~~~~~~~~~~--~~~~~---~~~~~~~~~~~~~~~~~~~~~~~sll~~l~~~g~~~~~~C~~G~C~~C~~~~~~g  481 (575)
                      +..    +....-|+  |.+..   .....++|++.+++++++++.++||||+++++|++++++|+.|.||+|++++++|
T Consensus       212 l~~----~~~~~i~~E~F~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ll~a~~~~g~~~~~~C~~G~Cg~C~~~v~~G  287 (321)
T 2pia_A          212 TGH----WPSGTVHFESFGATNTNARENTPFTVRLSRSGTSFEIPANRSILEVLRDANVRVPSSCESGTCGSCKTALCSG  287 (321)
T ss_dssp             TTT----SCTTCEEEECCCCCCCCCSCCCCEEEEETTTCCEEEECTTSCHHHHHHHTTCCCCCSCSSSSSCTTEEEEEES
T ss_pred             HHh----CCHhhEEEEecCCCCCCCCCCccEEEEEeCCCeEEEECCCCcHHHHHHHcCCCCCCCCCCCCCCCCEEEEecC
Confidence            654    21111122  44322   1235688888888999999999999999999999999999999999999999999


Q ss_pred             CCCCCCcCCCcc
Q 008159          482 QTPPVSLNQGKA  493 (575)
Q Consensus       482 ~v~~~~~~~~~~  493 (575)
                      ++++.. ..+++
T Consensus       288 ~~~~~~-~~l~~  298 (321)
T 2pia_A          288 EADHRD-MVLRD  298 (321)
T ss_dssp             CEECCC-SSCCT
T ss_pred             cccccc-CCCCh
Confidence            998643 33443

PyMOL of 2pia

>1qfj_A Protein (flavin reductase); riboflavin, ferredoxin reductase superfami oxidoreductase; 2.20A {Escherichia coli} SCOP: b.43.4.2 c.25.1.1	Back alignment and structure

>4eh1_A Flavohemoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: FAD; 2.20A {Vibrio cholerae o1 biovar el tor}	Back alignment and structure

>1tvc_A Methane monooxygenase component C, methane monooxygenase; FAD-binding, NADH-binding, oxidoreductase; HET: FDA; NMR {Methylococcus capsulatus} SCOP: b.43.4.2 c.25.1.2	Back alignment and structure

>1ep3_B Dihydroorotate dehydrogenase B (PYRK subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: b.43.4.2 c.25.1.3 PDB: 1ep1_B* 1ep2_B*	Back alignment and structure

>2eix_A NADH-cytochrome B5 reductase; flavoprotein, FAD-binding domain, NADH-binding, oxidoreducta; HET: FAD; 1.56A {Physarum polycephalum}	Back alignment and structure

>3lo8_A Ferredoxin--NADP reductase; electron transport, oxidoreductase, FAD, flavoprotein; HET: FAD; 1.05A {Zea mays} PDB: 3lvb_A* 1jb9_A*	Back alignment and structure

>3vo2_A Putative uncharacterized protein; rossmann fold, oxidoreductase, FAD binding; HET: FAD; 1.39A {Zea mays} PDB: 3vo1_A* 1gaw_A* 1gaq_A* 1qg0_A* 4af6_A* 1qga_A* 1qfz_A* 1qfy_A* 4af7_A* 1sm4_A* 3mhp_A* 1fnb_A* 1fnc_A* 1fnd_A* 1bx1_A* 1frq_A* 1frn_A* 1bx0_A* 2xnc_A*	Back alignment and structure

>1fdr_A Flavodoxin reductase; ferredoxin reductase, flavin, oxidoreductase, flavoprotein; HET: FAD; 1.70A {Escherichia coli} SCOP: b.43.4.2 c.25.1.1 PDB: 2xnj_A* 3fpk_A*	Back alignment and structure

>3jqq_A Ferredoxin NADP reductase; FAD, oxidoreductase; HET: FAD A2P; 2.20A {Plasmodium falciparum} PDB: 2ok8_A* 2ok7_A* 3jqr_A* 3jqp_A*	Back alignment and structure

>1umk_A B5R, NADH-cytochrome B5 reductase; flavoprotein, beta barrel, FAD-binding domain, NADH-binding domain, oxidoreductase; HET: FAD; 1.75A {Homo sapiens} SCOP: b.43.4.2 c.25.1.1 PDB: 1ndh_A* 1i7p_A* 1ib0_A* 1qx4_A*	Back alignment and structure

>1krh_A Benzoate 1,2-dioxygenase reductase; alpha-beta, FAD-binding, ferredoxin, NADH-binding, oxidoreductase; HET: FAD; 1.50A {Acinetobacter SP} SCOP: b.43.4.2 c.25.1.2 d.15.4.2	Back alignment and structure

>4fk8_A Ferredoxin--NADP reductase; ssgcid, NIH, niaid, structural genomics, national institute allergy and infectious diseases; HET: FAD; 2.10A {Burkholderia thailandensis} PDB: 4f7d_A*	Back alignment and structure

>4g1v_A Flavohemoglobin; three domains: globin fold, antiparallel beta-barrel, alpha/ fold, RESP., FAD, oxidoreductase; HET: HEM FAD; 2.10A {Saccharomyces cerevisiae} PDB: 4g1b_A*	Back alignment and structure

>2r6h_A NADH:ubiquinone oxidoreductase, Na translocating, subunit; alpha-beta-alpha sandwich, structural genomics, PSI-2; HET: FAD; 2.95A {Porphyromonas gingivalis}	Back alignment and structure

>1gvh_A Flavohemoprotein; oxidoreductase, NADP, heme, flavoprotein, FAD, iron transpor; HET: FAD HEM; 2.19A {Escherichia coli} SCOP: a.1.1.2 b.43.4.2 c.25.1.5	Back alignment and structure

>1cqx_A Flavohemoprotein; globin fold, six-stranded antiparallel beta sheet, helix-FLA five-stranded parallel beta sheet, lipid binding protein; HET: HEM FAD DGG; 1.75A {Cupriavidus necator} SCOP: a.1.1.2 b.43.4.2 c.25.1.5 PDB: 3ozu_A* 3ozv_B* 3ozw_A*	Back alignment and structure

>1fnb_A Ferredoxin-NADP+ reductase; oxidoreductase (NADP+(A),ferredoxin(A)); HET: FAD; 1.70A {Spinacia oleracea} SCOP: b.43.4.2 c.25.1.1 PDB: 1fnc_A* 1fnd_A* 1bx1_A* 1frq_A* 1frn_A* 1bx0_A* 1qg0_A* 1qga_A* 1qfz_A* 1qfy_A* 1gaw_A* 1gaq_A* 3mhp_A* 1sm4_A* 2xnc_A*	Back alignment and structure

>2qdx_A Ferredoxin reductase; oxidoreductase; HET: FAD; 1.55A {Pseudomonas aeruginosa} PDB: 3crz_A* 1a8p_A*	Back alignment and structure

>2cnd_A NADH-dependent nitrate reductase; nitrate assimilating enzyme, oxidoreductase, nitrogenous acceptor; HET: FAD; 2.50A {Zea mays} SCOP: b.43.4.2 c.25.1.1 PDB: 1cnf_A* 1cne_A*	Back alignment and structure

>2bgi_A Ferredoxin-NADP(H) reductase; ferredoxin(flavodoxin)-NADP(H) reductase, flavoproteins, electron transfer, oxidoreductase; HET: FAD HTG; 1.68A {Rhodobacter capsulatus} PDB: 2bgj_A* 2vnh_A* 2vni_A* 2vnj_A* 2vnk_A*	Back alignment and structure

>2bmw_A Ferredoxin--NADP reductase; oxidoreductase, flavoprotein, FAD, FNR, reductase reductase, phycobilisome, thylakoid; HET: FAD; 1.5A {Anabaena SP} SCOP: b.43.4.2 c.25.1.1 PDB: 1h42_A* 2vyq_A* 2vzl_A* 1ogi_A* 1ogj_A* 1gjr_A* 1e62_A* 1e64_A* 1quf_A* 1e63_A* 1go2_A* 1w34_A* 1b2r_A* 1w35_A* 1w87_A* 1que_A* 1ewy_A* 1gr1_A* 2bsa_A* 1bqe_A* ...	Back alignment and structure

>2b5o_A FNR, ferredoxin--NADP reductase; complex with FAD, oxidoreductase; HET: FAD; 2.50A {Synechococcus SP}	Back alignment and structure

>2rc5_A Ferredoxin-NADP reductase; FAD, oxidoreductase; HET: FAD; 2.43A {Leptospira interrogans} PDB: 2rc6_A*	Back alignment and structure

>1ddg_A Sulfite reductase (NADPH) flavoprotein alpha- component; cytochrome P450 reductase, FNR, modular protein, oxidoreductase; HET: FAD; 2.01A {Escherichia coli} SCOP: b.43.4.1 c.25.1.4 PDB: 1ddi_A*	Back alignment and structure

>3a1f_A Cytochrome B-245 heavy chain; GP91(PHOX), NADPH binding domain, oxidoreductase; 2.00A {Homo sapiens}	Back alignment and structure

>2gpj_A Siderophore-interacting protein; structural genomics, joint for structural genomics, JCSG; HET: FAD; 2.20A {Shewanella putrefaciens}	Back alignment and structure

>4dql_A Bifunctional P-450/NADPH-P450 reductase; rossmann fold, redox, FAD and NADP+ binding, oxidoreductase; HET: FAD NAP 1PE PG4; 2.15A {Bacillus megaterium} PDB: 4dqk_A*	Back alignment and structure

>2qtl_A MSR;, methionine synthase reductase; alpha-beta-alpha structural motif, flattened antiparallel BE barrel, flexible hinge region, connecting domain; HET: FAD; 1.90A {Homo sapiens} PDB: 2qtz_A*	Back alignment and structure

>1f20_A Nitric-oxide synthase; nitric-xoide synthase, reductase domain, FAD, NADP+, oxidore; HET: FAD NAP; 1.90A {Rattus norvegicus} SCOP: b.43.4.1 c.25.1.4	Back alignment and structure

>2bpo_A CPR, P450R, NADPH-cytochrom P450 reductase; NADPH-cytochrome P450 reductase, diflavin reductase, FAD, FMN-binding, electron transfer; HET: FAD FMN NAP; 2.9A {Saccharomyces cerevisiae} PDB: 2bn4_A* 2bf4_A*	Back alignment and structure

>1tll_A Nitric-oxide synthase, brain; reductase module, FMN, FAD, NADP+, oxidoreductase; HET: FMN FAD NAP; 2.30A {Rattus norvegicus} SCOP: b.43.4.1 c.23.5.2 c.25.1.4	Back alignment and structure

>3qfs_A CPR, P450R, NADPH--cytochrome P450 reductase; flavoprotein, FAD, oxidoreductase; HET: FAD NAP; 1.40A {Homo sapiens} PDB: 3qft_A*	Back alignment and structure

>3qe2_A CPR, P450R, NADPH--cytochrome P450 reductase; cypor, antley-bixler syndrome, flavoprotein, FMN, FAD, oxidoreductase; HET: FAD FMN NAP; 1.75A {Homo sapiens} PDB: 3qfc_A* 3qfr_A* 1amo_A* 1j9z_A* 1ja0_A* 1ja1_A* 3es9_A* 3ojw_A* 3ojx_A* 3fjo_A* 1b1c_A*	Back alignment and structure

>3lrx_A Putative hydrogenase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.60A {Pyrococcus furiosus}	Back alignment and structure

>3lyu_A Putative hydrogenase; the C-terminal has AN alpha-beta fold, structural genomics, PSI-2, protein structure initiative; 2.30A {Pyrococcus furiosus}	Back alignment and structure

>1awd_A Ferredoxin; electron transport, eukaryotic, green ALGA, electron transfer, metalloprotein; 1.40A {'chlorella' fusca} SCOP: d.15.4.1	Back alignment and structure

>1frd_A Heterocyst [2Fe-2S] ferredoxin; electron transport; 1.70A {Nostoc SP} SCOP: d.15.4.1	Back alignment and structure

>1iue_A Ferredoxin; electron transport, iron-sulfur; 1.70A {Plasmodium falciparum} SCOP: d.15.4.1	Back alignment and structure

>1doi_A 2Fe-2S ferredoxin; halophilic protein, redox protein, iron-sulfur, electron transport; 1.90A {Haloarcula marismortui} SCOP: d.15.4.1 PDB: 1e0z_A* 1e10_A	Back alignment and structure

>1frr_A Ferredoxin I; electron transfer(iron-sulfur protein); 1.80A {Equisetum arvense} SCOP: d.15.4.1	Back alignment and structure

>1jq4_A Methane monooxygenase component C; [2Fe-2S] ferredoxin, oxidoreductase; NMR {Methylococcus capsulatus str} SCOP: d.15.4.2	Back alignment and structure

>1wri_A Ferredoxin II, ferredoxin; electron transport; 1.20A {Equisetum arvense} SCOP: d.15.4.1	Back alignment and structure

>1a70_A Ferredoxin; iron-sulfur protein, photosynthesis, electron transport; 1.70A {Spinacia oleracea} SCOP: d.15.4.1 PDB: 1pfd_A	Back alignment and structure

>1czp_A Ferredoxin I; [2Fe-2S] protein, crystal reduced with dithionite, electron; 1.17A {Nostoc SP} SCOP: d.15.4.1 PDB: 1ewy_C* 1fxa_A 1qt9_A 1qog_A 1j7c_A 1j7b_A 1qof_A 1qob_A 1j7a_A 1qoa_A 1rfk_A 3p63_A 4fxc_A 3ab5_A 1roe_A 2cjn_A 2cjo_A 1off_A 1dox_A 1doy_A ...	Back alignment and structure

>1l5p_A Ferredoxin; [2Fe-2S] cluster, electron transfer, iron-sulfur protein, metalloprotein, oxidoreductase; 2.20A {Trichomonas vaginalis} SCOP: d.15.4.1	Back alignment and structure

>2wlb_A ETP1-FD, electron transfer protein 1, mitochondrial; iron-sulfur, iron, transport, ferredoxin, adrenodoxin-like, electron transport; 2.60A {Schizosaccharomyces pombe}	Back alignment and structure

>1xlq_A Putidaredoxin, PDX; [2Fe-2S], ferredoxin, oxidoreductase; 1.45A {Pseudomonas putida} SCOP: d.15.4.1 PDB: 1xlp_A 1oqr_A 1r7s_A 1pdx_A 1yji_A 1yjj_A 1oqq_A 1xln_A 1xlo_A 3lb8_C* 1put_A 1gpx_A	Back alignment and structure

>1i7h_A Ferredoxin; 2Fe-2S,electron transport; 1.70A {Escherichia coli} SCOP: d.15.4.1	Back alignment and structure

>1uwm_A Ferredoxin VI, FDVI; electron transport, metal-binding, iron-sulfur, iron, 2Fe-2S; 2.0A {Rhodobacter capsulatus} SCOP: d.15.4.1 PDB: 1e9m_A	Back alignment and structure

>2y5c_A Adrenodoxin-like protein, mitochondrial; electron transport, iron-sulfur cluster biogenesis; 1.70A {Homo sapiens}	Back alignment and structure

>3lxf_A Ferredoxin; iron, iron-sulfur, metal-binding, metal protein; 2.30A {Novosphingobium aromaticivorans} SCOP: d.15.4.0	Back alignment and structure

>1b9r_A Protein (terpredoxin); structure from molmol, ferredoxin; NMR {Pseudomonas SP} SCOP: d.15.4.1	Back alignment and structure

>2bt6_A Adrenodoxin 1; ruthenium(II) bipyridyl complex, intramolecular electron TRA electron transport, metal-binding; HET: RUA; 1.50A {Bos taurus} SCOP: d.15.4.1 PDB: 1ayf_A 3n9y_C* 2jqr_B* 3na0_C*	Back alignment and structure

>3zyy_X Iron-sulfur cluster binding protein; iron-sulfur-binding protein, ashka family, ATPase; 2.20A {Carboxydothermus hydrogenoformans}	Back alignment and structure

>3ah7_A [2Fe-2S]ferredoxin; [2Fe-2S] cluster, iron-sulfur cluster biosynthes pseudomonas, metal binding protein; 1.90A {Pseudomonas putida}	Back alignment and structure

>3hui_A Ferredoxin; cytochrome P450, electron transfer, iron, iron-sulfur, metal-binding, electron transport; 2.01A {Rhodopseudomonas palustris}	Back alignment and structure

>1krh_A Benzoate 1,2-dioxygenase reductase; alpha-beta, FAD-binding, ferredoxin, NADH-binding, oxidoreductase; HET: FAD; 1.50A {Acinetobacter SP} SCOP: b.43.4.2 c.25.1.2 d.15.4.2	Back alignment and structure

>3n9z_C Adrenodoxin; cytochrome P450, 22-hydroxycholesterol, cholesterol SIDE CHA cleavage, structural genomics; HET: HEM HC9; 2.17A {Homo sapiens} SCOP: d.15.4.1 PDB: 3na1_C* 3p1m_A* 1l6u_A 1l6v_A 1e6e_B* 1cje_A	Back alignment and structure

>1t3q_A Quinoline 2-oxidoreductase small subunit; QOR, molybdenum, MCD; HET: FAD MCN; 1.80A {Pseudomonas putida} SCOP: a.56.1.1 d.15.4.2	Back alignment and structure

>3hrd_D Nicotinate dehydrogenase small FES subunit; selenium ligand, iron, iron-sulfur, metal-binding, oxidoreductase; HET: MCN FAD; 2.20A {Eubacterium barkeri}	Back alignment and structure

>1rm6_C 4-hydroxybenzoyl-COA reductase gamma subunit; xanthine oxidase family, dimer heterotrimers, oxidoreductase; HET: PCD FAD SF4 EPE; 1.60A {Thauera aromatica} SCOP: a.56.1.1 d.15.4.2 PDB: 1sb3_C*	Back alignment and structure

>1ffv_A CUTS, iron-sulfur protein of carbon monoxide dehydrogenase; hydrolase; HET: ARO PCD FAD; 2.25A {Hydrogenophaga pseudoflava} SCOP: a.56.1.1 d.15.4.2 PDB: 1ffu_A*	Back alignment and structure

>2bs2_B Quinol-fumarate reductase iron-sulfur subunit B; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.1.2.1 d.15.4.2 PDB: 2bs3_B* 1e7p_B* 1qlb_B* 2bs4_B*	Back alignment and structure

>1n62_A Carbon monoxide dehydrogenase small chain; CODH, molybdenum, molybdopterin, oxidoreductase; HET: CUB MCN FAD; 1.09A {Oligotropha carboxidovorans} SCOP: a.56.1.1 d.15.4.2 PDB: 1n5w_A* 1n61_A* 1n60_A* 1n63_A* 1zxi_A*	Back alignment and structure

>2pia_A Phthalate dioxygenase reductase; HET: FMN; 2.00A {Burkholderia cepacia} SCOP: b.43.4.2 c.25.1.2 d.15.4.2	Back alignment and structure

>4eh1_A Flavohemoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: FAD; 2.20A {Vibrio cholerae o1 biovar el tor}	Back alignment and structure

>4g1v_A Flavohemoglobin; three domains: globin fold, antiparallel beta-barrel, alpha/ fold, RESP., FAD, oxidoreductase; HET: HEM FAD; 2.10A {Saccharomyces cerevisiae} PDB: 4g1b_A*	Back alignment and structure

>4fk8_A Ferredoxin--NADP reductase; ssgcid, NIH, niaid, structural genomics, national institute allergy and infectious diseases; HET: FAD; 2.10A {Burkholderia thailandensis} PDB: 4f7d_A*	Back alignment and structure

>3lyu_A Putative hydrogenase; the C-terminal has AN alpha-beta fold, structural genomics, PSI-2, protein structure initiative; 2.30A {Pyrococcus furiosus}	Back alignment and structure

>2wdq_B Succinate dehydrogenase iron-sulfur subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_B* 2acz_B* 1nek_B* 2wdr_B* 2wdv_B* 2ws3_B* 2wu2_B* 2wu5_B* 2wp9_B*	Back alignment and structure

>1qfj_A Protein (flavin reductase); riboflavin, ferredoxin reductase superfami oxidoreductase; 2.20A {Escherichia coli} SCOP: b.43.4.2 c.25.1.1	Back alignment and structure

>1tvc_A Methane monooxygenase component C, methane monooxygenase; FAD-binding, NADH-binding, oxidoreductase; HET: FDA; NMR {Methylococcus capsulatus} SCOP: b.43.4.2 c.25.1.2	Back alignment and structure

>1kf6_B Fumarate reductase iron-sulfur protein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.1.2.1 d.15.4.2 PDB: 1kfy_B* 1l0v_B* 2b76_B* 3cir_B* 3p4p_B* 3p4q_B* 3p4r_B* 3p4s_B*	Back alignment and structure

>3i9v_3 NADH-quinone oxidoreductase subunit 3; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_3* 2fug_3* 3iam_3* 3ias_3* 3m9s_3*	Back alignment and structure

>3lrx_A Putative hydrogenase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.60A {Pyrococcus furiosus}	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		575
d1gvha3		143	c.25.1.5 (A:254-396) Flavohemoglobin, C-terminal d	2e-06
d1a8pa2		158	c.25.1.1 (A:101-258) Ferredoxin reductase (flavodo	2e-06
d2bmwa2		162	c.25.1.1 (A:142-303) Ferredoxin reductase (flavodo	7e-06
d1ep3b2		160	c.25.1.3 (B:103-262) Dihydroorotate dehydrogenase	3e-05
d1jb9a2		154	c.25.1.1 (A:163-316) Ferredoxin reductase (flavodo	5e-05
d1tvca2		141	c.25.1.2 (A:111-251) Methane monooxygenase compone	5e-05
d1krha2		133	c.25.1.2 (A:206-338) Benzoate dioxygenase reductas	5e-05
d1fdra2		148	c.25.1.1 (A:101-248) Ferredoxin reductase (flavodo	6e-05
d1cqxa3		142	c.25.1.5 (A:262-403) Flavohemoglobin, C-terminal d	8e-05
d1qfja2		135	c.25.1.1 (A:98-232) NAD(P)H:flavin oxidoreductase	8e-05
d1f20a2		165	c.25.1.4 (A:1233-1397) Neuronal nitric-oxide synth	2e-04
d2cnda2		146	c.25.1.1 (A:125-270) Nitrate reductase {Corn (Zea	3e-04
d1fnda2		160	c.25.1.1 (A:155-314) Ferredoxin reductase (flavodo	9e-04
d1umka2		147	c.25.1.1 (A:154-300) cytochrome b5 reductase {Huma	0.001
d2piaa2		120	c.25.1.2 (A:104-223) Phthalate dioxygenase reducta	0.002
d1ddga2		153	c.25.1.4 (A:447-599) Sulfite reductase flavoprotei	0.002

>d1gvha3 c.25.1.5 (A:254-396) Flavohemoglobin, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 143	Back information, alignment and structure


class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Flavohemoglobin, C-terminal domain
domain: Flavohemoglobin, C-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 45.6 bits (107), Expect = 2e-06
 Identities = 18/113 (15%), Positives = 38/113 (33%), Gaps = 6/113 (5%)

Query: 286 LLLVAGGIGITPFLSILQEIASAQSNRKYRFPSKVQLIYVIKSSQEICLLNSISPLLSNQ 345
           + L++ G+G TP L++L  +A A          +V   +  ++       + +  L  + 
Sbjct: 9   VTLISAGVGQTPMLAMLDTLAKAGHTA------QVNWFHAAENGDVHAFADEVKELGQSL 62

Query: 346 QSKKWHLTLKVFVTQEEQSSVTVREVLNDLSLVRAVRFGTQSNYAVNGLESLI 398
                H   +     +        E L DLS +          + + G    +
Sbjct: 63  PRFTAHTWYRQPSEADRAKGQFDSEGLMDLSKLEGAFSDPTMQFYLCGPVGFM 115

PyMOL of d1gvha3

>d1a8pa2 c.25.1.1 (A:101-258) Ferredoxin reductase (flavodoxin reductase) {Azotobacter vinelandii [TaxId: 354]} Length = 158	Back information, alignment and structure

>d2bmwa2 c.25.1.1 (A:142-303) Ferredoxin reductase (flavodoxin reductase) {Cyanobacterium (Anabaena sp.), pcc 7119 [TaxId: 1167]} Length = 162	Back information, alignment and structure

>d1ep3b2 c.25.1.3 (B:103-262) Dihydroorotate dehydrogenase B, PyrK subunit {Lactococcus lactis, isozyme B [TaxId: 1358]} Length = 160	Back information, alignment and structure

>d1jb9a2 c.25.1.1 (A:163-316) Ferredoxin reductase (flavodoxin reductase) {Maize (Zea mays), root isoform [TaxId: 4577]} Length = 154	Back information, alignment and structure

>d1tvca2 c.25.1.2 (A:111-251) Methane monooxygenase component C, MmoC {Methylococcus capsulatus [TaxId: 414]} Length = 141	Back information, alignment and structure

>d1krha2 c.25.1.2 (A:206-338) Benzoate dioxygenase reductase {Acinetobacter sp. [TaxId: 472]} Length = 133	Back information, alignment and structure

>d1fdra2 c.25.1.1 (A:101-248) Ferredoxin reductase (flavodoxin reductase) {Escherichia coli [TaxId: 562]} Length = 148	Back information, alignment and structure

>d1cqxa3 c.25.1.5 (A:262-403) Flavohemoglobin, C-terminal domain {Alcaligenes eutrophus [TaxId: 106590]} Length = 142	Back information, alignment and structure

>d1qfja2 c.25.1.1 (A:98-232) NAD(P)H:flavin oxidoreductase {Escherichia coli [TaxId: 562]} Length = 135	Back information, alignment and structure

>d1f20a2 c.25.1.4 (A:1233-1397) Neuronal nitric-oxide synthase FAD/NADP+ domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 165	Back information, alignment and structure

>d2cnda2 c.25.1.1 (A:125-270) Nitrate reductase {Corn (Zea mays) [TaxId: 4577]} Length = 146	Back information, alignment and structure

>d1fnda2 c.25.1.1 (A:155-314) Ferredoxin reductase (flavodoxin reductase) {Spinach (Spinacia oleracea) [TaxId: 3562]} Length = 160	Back information, alignment and structure

>d1umka2 c.25.1.1 (A:154-300) cytochrome b5 reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 147	Back information, alignment and structure

>d2piaa2 c.25.1.2 (A:104-223) Phthalate dioxygenase reductase {Pseudomonas cepacia, db01 [TaxId: 292]} Length = 120	Back information, alignment and structure

>d1ddga2 c.25.1.4 (A:447-599) Sulfite reductase flavoprotein {Escherichia coli [TaxId: 562]} Length = 153	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		575
d1tvca2		141	Methane monooxygenase component C, MmoC {Methyloco	99.76
d1umka2		147	cytochrome b5 reductase {Human (Homo sapiens) [Tax	99.7
d1krha2		133	Benzoate dioxygenase reductase {Acinetobacter sp.	99.7
d1ep3b2		160	Dihydroorotate dehydrogenase B, PyrK subunit {Lact	99.69
d1qfja1		97	NAD(P)H:flavin oxidoreductase {Escherichia coli [T	99.67
d1cqxa3		142	Flavohemoglobin, C-terminal domain {Alcaligenes eu	99.61
d1qfja2		135	NAD(P)H:flavin oxidoreductase {Escherichia coli [T	99.61
d1a8pa1		99	Ferredoxin reductase (flavodoxin reductase) N-term	99.6
d1gvha3		143	Flavohemoglobin, C-terminal domain {Escherichia co	99.57
d2cnda2		146	Nitrate reductase {Corn (Zea mays) [TaxId: 4577]}	99.54
d1tvca1		109	Methane monooxygenase component C, MmoC {Methyloco	99.54
d1fnda2		160	Ferredoxin reductase (flavodoxin reductase) {Spina	99.54
d1fdra1		99	Ferredoxin reductase (flavodoxin reductase) N-term	99.54
d1fdra2		148	Ferredoxin reductase (flavodoxin reductase) {Esche	99.54
d1krha1		100	Benzoate dioxygenase reductase {Acinetobacter sp.	99.52
d1jb9a2		154	Ferredoxin reductase (flavodoxin reductase) {Maize	99.52
d2piaa2		120	Phthalate dioxygenase reductase {Pseudomonas cepac	99.51
d2bmwa2		162	Ferredoxin reductase (flavodoxin reductase) {Cyano	99.49
d1ep3b1		101	Dihydroorotate dehydrogenase B, PyrK subunit {Lact	99.47
d1cqxa2		111	Flavohemoglobin, central domain {Alcaligenes eutro	99.46
d1f20a2		165	Neuronal nitric-oxide synthase FAD/NADP+ domain {R	99.46
d1ddga2		153	Sulfite reductase flavoprotein {Escherichia coli [	99.45
d1a8pa2		158	Ferredoxin reductase (flavodoxin reductase) {Azoto	99.41
d1ja1a3		160	NADPH-cytochrome p450 reductase {Rat (Rattus norve	99.41
d1gvha2		107	Flavohemoglobin, central domain {Escherichia coli	99.4
d2piaa1		103	Phthalate dioxygenase reductase {Pseudomonas cepac	99.38
d2cnda1		114	Nitrate reductase core domain {Corn (Zea mays) [Ta	99.25
d1fnda1		136	Ferredoxin reductase (flavodoxin reductase) N-term	99.2
d1umka1		124	cytochrome b5 reductase {Human (Homo sapiens) [Tax	99.19
d2bmwa1		133	Ferredoxin reductase (flavodoxin reductase) N-term	99.16
d2piaa3		98	Phthalate dioxygenase reductase, C-terminal domain	98.75
d1awda_		94	2Fe-2S ferredoxin {Chlorella fusca [TaxId: 3073]}	98.74
d1jb9a1		157	Ferredoxin reductase (flavodoxin reductase) N-term	98.68
d1frra_		95	2Fe-2S ferredoxin {Equisetum arvense [TaxId: 3258]	98.67
d1czpa_		98	2Fe-2S ferredoxin {Cyanobacterium (Anabaena sp.),	98.66
d1iuea_		98	2Fe-2S ferredoxin {Malaria parasite (Plasmodium fa	98.65
d1frda_		98	2Fe-2S ferredoxin {Cyanobacterium (Anabaena sp.),	98.56
d1wria_		93	2Fe-2S ferredoxin {Equisetum arvense [TaxId: 3258]	98.56
d1doia_		128	2Fe-2S ferredoxin {Archaeon Haloarcula marismortui	98.51
d1a70a_		97	2Fe-2S ferredoxin {Spinach (Spinacia oleracea) [Ta	98.51
d1jq4a_		98	Methane monooxygenase reductase N-terminal domain	98.28
d1krha3		104	Benzoate dioxygenase reductase, N-terminal domain	98.26
d1i7ha_		109	Adrenodoxin-like ferredoxin {Escherichia coli [Tax	97.29
d2fug33		95	Nadh-quinone oxidoreductase chain 3, Nqo3, N-termi	97.24
d1l5pa_		93	2Fe-2S ferredoxin {Trichomonas vaginalis [TaxId: 5	97.15
d1e9ma_		106	2Fe-2S ferredoxin {Rhodobacter capsulatus, ferredo	96.74
d1b9ra_		105	2Fe-2S ferredoxin {Pseudomonas sp., terpredoxin [T	96.28
d1xlqa1		106	2Fe-2S ferredoxin {Pseudomonas putida, putidaredox	96.28
d1tvca2		141	Methane monooxygenase component C, MmoC {Methyloco	94.53
d2bt6a1		104	Adrenodoxin {Cow (Bos taurus) [TaxId: 9913]}	94.0
d1cqxa3		142	Flavohemoglobin, C-terminal domain {Alcaligenes eu	93.95
d2piaa2		120	Phthalate dioxygenase reductase {Pseudomonas cepac	93.76
d1krha2		133	Benzoate dioxygenase reductase {Acinetobacter sp.	93.08
d1dgja2		80	Aldehyde oxidoreductase, N-terminal domain {Desulf	92.75
d1fdra2		148	Ferredoxin reductase (flavodoxin reductase) {Esche	92.52
d1gvha3		143	Flavohemoglobin, C-terminal domain {Escherichia co	92.24
d1t3qa2		81	Quinoline 2-oxidoreductase small subunit QorS, N-d	91.92
d1vlba2		80	Aldehyde oxidoreductase, N-terminal domain {Desulf	91.66
d1qfja2		135	NAD(P)H:flavin oxidoreductase {Escherichia coli [T	91.39
d1rm6c2		81	4-hydroxybenzoyl-CoA reductase gamma subunit HrcC,	91.06
d1a8pa2		158	Ferredoxin reductase (flavodoxin reductase) {Azoto	90.85
d1ffva2		79	Carbone monoxide (CO) dehydrogenase iron-sulfur pr	90.84
d1n62a2		79	Carbone monoxide (CO) dehydrogenase iron-sulfur pr	90.71
d2bmwa2		162	Ferredoxin reductase (flavodoxin reductase) {Cyano	89.74
d1jroa2		84	Xanthine dehydrogenase chain A, N-terminal domain	87.35
d1ddga1		221	Sulfite reductase flavoprotein {Escherichia coli [	87.25
d3c8ya2		126	Fe-only hydrogenase, N-terminal domain {Clostridiu	85.57
d1kf6b2		105	Fumarate reductase iron-sulfur protein, N-terminal	84.5
d2bs2b2		106	Fumarate reductase iron-sulfur protein, N-terminal	83.91
d1v97a2		90	Xanthine oxidase, N-terminal domain {Cow (Bos taur	82.87

>d1tvca2 c.25.1.2 (A:111-251) Methane monooxygenase component C, MmoC {Methylococcus capsulatus [TaxId: 414]}	Back information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Aromatic dioxygenase reductase-like
domain: Methane monooxygenase component C, MmoC
species: Methylococcus capsulatus [TaxId: 414]

Probab=99.76  E-value=8.4e-19  Score=155.04  Aligned_cols=124  Identities=14%  Similarity=0.175  Sum_probs=99.5

Q ss_pred             CCCcCCCCeEEEEEeCCChhhHHHHHHHHHHhhccCCCCCCceEEEEEEeCCcchhhhHHhHHHHhhhccCCCceeEEEE
Q 008159          277 TMDFLRYDSLLLVAGGIGITPFLSILQEIASAQSNRKYRFPSKVQLIYVIKSSQEICLLNSISPLLSNQQSKKWHLTLKV  356 (575)
Q Consensus       277 ~~~~~~~~~vvlIagGiGITP~lsil~~l~~~~~~~~~~~~~~v~li~~~r~~~~l~~~~~l~~~l~~~~~~~~~l~~~~  356 (575)
                      .++-+..+++|||||||||||++||++++...+      ..++++|+|++|+.+++.|.+++.++..+    .+++++..
T Consensus         2 ~l~~~~~~p~vliagGtGItP~~s~l~~~~~~~------~~~~v~l~~~~r~~~d~~~~~el~~l~~~----~~~~~~~~   71 (141)
T d1tvca2           2 GLKERGMAPRYFVAGGTGLAPVVSMVRQMQEWT------APNETRIYFGVNTEPELFYIDELKSLERS----MRNLTVKA   71 (141)
T ss_dssp             SCCCCSSSCEEEEEESSTTHHHHHHHHHHHHHT------CCSCEEEEEECSSSTTCCCHHHHHHHHHH----SSSCEEEE
T ss_pred             CCCCCCCCcEEEEECchhHHHHHHHHHHHHHcC------CCCceEEEeecccchhhhhHHHHHHHHhh----ccccccce
Confidence            444456678999999999999999999998864      34789999999999999999999886432    35788999


Q ss_pred             EEeCCCCCcchhhhhhchhhhhhhhccCCCceeEEecCCchHHHHHHHHHHHHHHHHH
Q 008159          357 FVTQEEQSSVTVREVLNDLSLVRAVRFGTQSNYAVNGLESLIWMAALVGITSILFVIF  414 (575)
Q Consensus       357 ~vT~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vcGp~~~~~~~~v~~~~~~~~~~~  414 (575)
                      .++++++.+.+.+|++.+..............+|+|||++  |++++.+.+..  .|+
T Consensus        72 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~vyiCGp~~--m~~~v~~~l~~--~Gv  125 (141)
T d1tvca2          72 CVWHPSGDWEGEQGSPIDALREDLESSDANPDIYLCGPPG--MIDAACELVRS--RGI  125 (141)
T ss_dssp             CCSSCSSCCSSSSSSSSHHHHHHHHHSSSSSEEEEESSHH--HHHHHHHHHHH--HCC
T ss_pred             eecccccCcCCccchhHHHHHHhcccccccceeeccCCHH--HHHHHHHHHHH--cCC
Confidence            9998887777788888776554433444557899999998  99999998877  454

PyMOL of d1tvca2

>d1umka2 c.25.1.1 (A:154-300) cytochrome b5 reductase {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1krha2 c.25.1.2 (A:206-338) Benzoate dioxygenase reductase {Acinetobacter sp. [TaxId: 472]}	Back information, alignment and structure

>d1ep3b2 c.25.1.3 (B:103-262) Dihydroorotate dehydrogenase B, PyrK subunit {Lactococcus lactis, isozyme B [TaxId: 1358]}	Back information, alignment and structure

>d1qfja1 b.43.4.2 (A:1-97) NAD(P)H:flavin oxidoreductase {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1cqxa3 c.25.1.5 (A:262-403) Flavohemoglobin, C-terminal domain {Alcaligenes eutrophus [TaxId: 106590]}	Back information, alignment and structure

>d1qfja2 c.25.1.1 (A:98-232) NAD(P)H:flavin oxidoreductase {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1a8pa1 b.43.4.2 (A:2-100) Ferredoxin reductase (flavodoxin reductase) N-terminal domain {Azotobacter vinelandii [TaxId: 354]}	Back information, alignment and structure

>d1gvha3 c.25.1.5 (A:254-396) Flavohemoglobin, C-terminal domain {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d2cnda2 c.25.1.1 (A:125-270) Nitrate reductase {Corn (Zea mays) [TaxId: 4577]}	Back information, alignment and structure

>d1tvca1 b.43.4.2 (A:2-110) Methane monooxygenase component C, MmoC {Methylococcus capsulatus [TaxId: 414]}	Back information, alignment and structure

>d1fnda2 c.25.1.1 (A:155-314) Ferredoxin reductase (flavodoxin reductase) {Spinach (Spinacia oleracea) [TaxId: 3562]}	Back information, alignment and structure

>d1fdra1 b.43.4.2 (A:2-100) Ferredoxin reductase (flavodoxin reductase) N-terminal domain {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1fdra2 c.25.1.1 (A:101-248) Ferredoxin reductase (flavodoxin reductase) {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1krha1 b.43.4.2 (A:106-205) Benzoate dioxygenase reductase {Acinetobacter sp. [TaxId: 472]}	Back information, alignment and structure

>d1jb9a2 c.25.1.1 (A:163-316) Ferredoxin reductase (flavodoxin reductase) {Maize (Zea mays), root isoform [TaxId: 4577]}	Back information, alignment and structure

>d2piaa2 c.25.1.2 (A:104-223) Phthalate dioxygenase reductase {Pseudomonas cepacia, db01 [TaxId: 292]}	Back information, alignment and structure

>d2bmwa2 c.25.1.1 (A:142-303) Ferredoxin reductase (flavodoxin reductase) {Cyanobacterium (Anabaena sp.), pcc 7119 [TaxId: 1167]}	Back information, alignment and structure

>d1ep3b1 b.43.4.2 (B:2-102) Dihydroorotate dehydrogenase B, PyrK subunit {Lactococcus lactis, isozyme B [TaxId: 1358]}	Back information, alignment and structure

>d1cqxa2 b.43.4.2 (A:151-261) Flavohemoglobin, central domain {Alcaligenes eutrophus [TaxId: 106590]}	Back information, alignment and structure

>d1f20a2 c.25.1.4 (A:1233-1397) Neuronal nitric-oxide synthase FAD/NADP+ domain {Rat (Rattus norvegicus) [TaxId: 10116]}	Back information, alignment and structure

>d1ddga2 c.25.1.4 (A:447-599) Sulfite reductase flavoprotein {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1a8pa2 c.25.1.1 (A:101-258) Ferredoxin reductase (flavodoxin reductase) {Azotobacter vinelandii [TaxId: 354]}	Back information, alignment and structure

>d1ja1a3 c.25.1.4 (A:519-678) NADPH-cytochrome p450 reductase {Rat (Rattus norvegicus) [TaxId: 10116]}	Back information, alignment and structure

>d1gvha2 b.43.4.2 (A:147-253) Flavohemoglobin, central domain {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d2piaa1 b.43.4.2 (A:1-103) Phthalate dioxygenase reductase {Pseudomonas cepacia, db01 [TaxId: 292]}	Back information, alignment and structure

>d2cnda1 b.43.4.2 (A:11-124) Nitrate reductase core domain {Corn (Zea mays) [TaxId: 4577]}	Back information, alignment and structure

>d1fnda1 b.43.4.2 (A:19-154) Ferredoxin reductase (flavodoxin reductase) N-terminal domain {Spinach (Spinacia oleracea) [TaxId: 3562]}	Back information, alignment and structure

>d1umka1 b.43.4.2 (A:30-153) cytochrome b5 reductase {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2bmwa1 b.43.4.2 (A:9-141) Ferredoxin reductase (flavodoxin reductase) N-terminal domain {Cyanobacterium (Anabaena sp.), pcc 7119 [TaxId: 1167]}	Back information, alignment and structure

>d2piaa3 d.15.4.2 (A:224-321) Phthalate dioxygenase reductase, C-terminal domain {Pseudomonas cepacia, db01 [TaxId: 292]}	Back information, alignment and structure

>d1awda_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Chlorella fusca [TaxId: 3073]}	Back information, alignment and structure

>d1jb9a1 b.43.4.2 (A:6-162) Ferredoxin reductase (flavodoxin reductase) N-terminal domain {Maize (Zea mays), root isoform [TaxId: 4577]}	Back information, alignment and structure

>d1frra_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Equisetum arvense [TaxId: 3258]}	Back information, alignment and structure

>d1czpa_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Cyanobacterium (Anabaena sp.), pcc 7119 and 7120 [TaxId: 1167]}	Back information, alignment and structure

>d1iuea_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}	Back information, alignment and structure

>d1frda_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Cyanobacterium (Anabaena sp.), pcc 7119 and 7120 [TaxId: 1167]}	Back information, alignment and structure

>d1wria_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Equisetum arvense [TaxId: 3258]}	Back information, alignment and structure

>d1doia_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Archaeon Haloarcula marismortui [TaxId: 2238]}	Back information, alignment and structure

>d1a70a_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Spinach (Spinacia oleracea) [TaxId: 3562]}	Back information, alignment and structure

>d1jq4a_ d.15.4.2 (A:) Methane monooxygenase reductase N-terminal domain {Methylococcus capsulatus [TaxId: 414]}	Back information, alignment and structure

>d1krha3 d.15.4.2 (A:2-105) Benzoate dioxygenase reductase, N-terminal domain {Acinetobacter sp. [TaxId: 472]}	Back information, alignment and structure

>d1i7ha_ d.15.4.1 (A:) Adrenodoxin-like ferredoxin {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d2fug33 d.15.4.2 (3:1-95) Nadh-quinone oxidoreductase chain 3, Nqo3, N-terminal domain {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure

>d1l5pa_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Trichomonas vaginalis [TaxId: 5722]}	Back information, alignment and structure

>d1e9ma_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Rhodobacter capsulatus, ferredoxin VI [TaxId: 1061]}	Back information, alignment and structure

>d1b9ra_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Pseudomonas sp., terpredoxin [TaxId: 306]}	Back information, alignment and structure

>d1xlqa1 d.15.4.1 (A:1-106) 2Fe-2S ferredoxin {Pseudomonas putida, putidaredoxin [TaxId: 303]}	Back information, alignment and structure

>d1tvca2 c.25.1.2 (A:111-251) Methane monooxygenase component C, MmoC {Methylococcus capsulatus [TaxId: 414]}	Back information, alignment and structure

>d2bt6a1 d.15.4.1 (A:5-108) Adrenodoxin {Cow (Bos taurus) [TaxId: 9913]}	Back information, alignment and structure

>d1cqxa3 c.25.1.5 (A:262-403) Flavohemoglobin, C-terminal domain {Alcaligenes eutrophus [TaxId: 106590]}	Back information, alignment and structure

>d2piaa2 c.25.1.2 (A:104-223) Phthalate dioxygenase reductase {Pseudomonas cepacia, db01 [TaxId: 292]}	Back information, alignment and structure

>d1krha2 c.25.1.2 (A:206-338) Benzoate dioxygenase reductase {Acinetobacter sp. [TaxId: 472]}	Back information, alignment and structure

>d1dgja2 d.15.4.2 (A:1-80) Aldehyde oxidoreductase, N-terminal domain {Desulfovibrio desulfuricans [TaxId: 876]}	Back information, alignment and structure

>d1fdra2 c.25.1.1 (A:101-248) Ferredoxin reductase (flavodoxin reductase) {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1gvha3 c.25.1.5 (A:254-396) Flavohemoglobin, C-terminal domain {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1t3qa2 d.15.4.2 (A:7-87) Quinoline 2-oxidoreductase small subunit QorS, N-domain {Pseudomonas putida [TaxId: 303]}	Back information, alignment and structure

>d1vlba2 d.15.4.2 (A:1-80) Aldehyde oxidoreductase, N-terminal domain {Desulfovibrio gigas [TaxId: 879]}	Back information, alignment and structure

>d1qfja2 c.25.1.1 (A:98-232) NAD(P)H:flavin oxidoreductase {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1rm6c2 d.15.4.2 (C:1-81) 4-hydroxybenzoyl-CoA reductase gamma subunit HrcC, N-terminal domain {Thauera aromatica [TaxId: 59405]}	Back information, alignment and structure

>d1a8pa2 c.25.1.1 (A:101-258) Ferredoxin reductase (flavodoxin reductase) {Azotobacter vinelandii [TaxId: 354]}	Back information, alignment and structure

>d1ffva2 d.15.4.2 (A:3-81) Carbone monoxide (CO) dehydrogenase iron-sulfur protein, N-domain {Hydrogenophaga pseudoflava [TaxId: 47421]}	Back information, alignment and structure

>d1n62a2 d.15.4.2 (A:3-81) Carbone monoxide (CO) dehydrogenase iron-sulfur protein, N-domain {Oligotropha carboxidovorans, formerly Pseudomonas carboxydovorans [TaxId: 40137]}	Back information, alignment and structure

>d2bmwa2 c.25.1.1 (A:142-303) Ferredoxin reductase (flavodoxin reductase) {Cyanobacterium (Anabaena sp.), pcc 7119 [TaxId: 1167]}	Back information, alignment and structure

>d1jroa2 d.15.4.2 (A:1-84) Xanthine dehydrogenase chain A, N-terminal domain {Rhodobacter capsulatus [TaxId: 1061]}	Back information, alignment and structure

>d1ddga1 b.43.4.1 (A:226-446) Sulfite reductase flavoprotein {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d3c8ya2 d.15.4.2 (A:1-126) Fe-only hydrogenase, N-terminal domain {Clostridium pasteurianum [TaxId: 1501]}	Back information, alignment and structure

>d1kf6b2 d.15.4.2 (B:1-105) Fumarate reductase iron-sulfur protein, N-terminal domain {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d2bs2b2 d.15.4.2 (B:1-106) Fumarate reductase iron-sulfur protein, N-terminal domain {Wolinella succinogenes [TaxId: 844]}	Back information, alignment and structure

>d1v97a2 d.15.4.2 (A:3-92) Xanthine oxidase, N-terminal domain {Cow (Bos taurus) [TaxId: 9913]}	Back information, alignment and structure