Citrus Sinensis ID: 008169

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-----
MGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQWMKWEELELLPSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAFSSGLDIGACNWIISGAKGNIAYISGSNFASGHAMDFDYRAIQGSDLILYSDLSSLDSTEDIDQSSFSDDNNNWEELMNSLSNYDESVEEMEKLAFICSCAIDSVKAGGSVLIPINRVGVFLQLLEQIAIFMECSSLKIPIYIISSVAEELLAYTNTIPEWLCKQRQEKLFSGDPLFAHVKLIKEKKIHVFPAVHSPKLLMNWQEPCIVFSPHWSLRLGPTIHLLRRWSGDHNSLLVLENEVDAELAVLPFKPISMKVLQCSFLSGKKLQKVQPLLKILQPKLVLFPEEWRTHVSFSDVTSFSVSHYSENETIHIPSLKESAELEIAADIASKFQWRMLKQKKLNITRLKGRLFVNHGKHQLLPENEPGGSSQTRPFLHWGSPDPENLLAELSKMGINGSVERCMTDAESEDGFTVKVQDPEKSMIEVRAAVTVISAADKNLASRIVKAMENILEGI
cccccHHHHHHccccccEEEEEHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHcHHHHHHHcccccccccccccccHHHHHHHHHcccccccccEEEEcccEEEEEEEcccccccEEEEEEccccEEEEEccccccccccccccccccccccEEEEcccccccccccccccccccccccHHHHHHccccccccHHHHHHHHHHHHHHHHHHHcccEEEEccccHHHHHHHHHHHHHHHHHccccccEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHccccccccccccccHHHHHcccccEEEEEccccccccHHHHHHHHHHcccccEEEEEccccHHHcccccccccEEEEEEEcccccccccHHHHHHHccccEEEccccccccccccccccccccccccccEEEEcccccEEEEEEEHHHHHHHHHHHHHccccccEEEEEEEEEEccEEEEEccccccccccccccEEcccccHHHHHHHHHHccccccEEEEcccccccccEEEEEccccccEEEEEccEEEEEcccHHHHHHHHHHHHHHHccc
ccccccHHHHHccccccEEEEccHHHHHHHHHHHHHHHHHccEEEEcccccccccHHccHHHHHHccccHHHHcccccccccccccccHHHHHHHHHcEEEEEccEEEEEccEEEEEEEEcccEEcHHEEEEEEcccEEEEEccccccccccccccccccccccEEEEEccccccccEEEEEcccccccccccccccccccccccccHHHHHHHHHHHHHHHHHccccEEEEccHHHHHHHHHHHHHHHHHHccccccEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHccccccccccccccccccccccEEEEEccccccccHHHHHHHHHccccccEEEEcccHHHHHHccccccEEEEEEEEEccccccHHHHHHHHHHHccccEEEEcccccHHHHHHHHHHHHHccccccEEEEcccccEEEEEEcHHHHHHHcHHHHccccccccEEEEEEEEEcccEEEEccccccccccccEEEccccccHHHHHHHHHHHHccccHHHHHHHHHHccccEEEEEccccEEEEEEcccEEEEEccHHHHHHHHHHHHHHHccc
mgmlglpfltrmegfsAKIYITEAAARIGQLMMEELICMNMEYrqfygaeessgpqwmkwEELELLPSALRKIalgedgselgggcpciaHVKDCISKVqtlrfgeeacYNGILIIKAFSsgldigacnwiisgakgniayisgsnfasghamdfdyraiqgsdlilysdlssldstedidqssfsddnnNWEELMNSLSNYDESVEEMEKLAFICSCAIdsvkaggsvlipiNRVGVFLQLLEQIAIFMEcsslkipiYIISSVAEELLAYTNTIPEWLCKQRqeklfsgdplFAHVKLIKekkihvfpavhspkllmnwqepcivfsphwslrlgptihllrrwsgdhnsllVLENEvdaelavlpfkpisMKVLQCsflsgkklqkVQPLLkilqpklvlfpeewrthvsfsdvtsfsvshysenetihipslkesAELEIAADIASKFQWRMLKQKKLNITrlkgrlfvnhgkhqllpenepggssqtrpflhwgspdpENLLAELSKMGingsvercmtdaesedgftvkvqdpeksMIEVRAAVTVISAADKNLASRIVKAMENILEGI
MGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQWMKWEELELLPSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAFSSGLDIGACNWIISGAKGNIAYISGSNFASGHAMDFDYRAIQGSDLILYSDLSSLDSTEDidqssfsddnnnWEELMNSLSNYDESVEEMEKLAFICSCAIDSVKAGGSVLIPINRVGVFLQLLEQIAIFMECSSLKIPIYIISSVAEELLAYTNTIPEWLCKQRQEKLFSGDPLFAHVKLIKEKKIHVFPAVHSPKLLMNWQEPCIVFSPHWSLRLGPTIHLLRRWSGDHNSLLVLENEVDAELAVLPFKPISMKVLQCSFLSGKKLQKVQPLLKILQPKLVLFPEEWRTHVSFSDVTSFSVSHYSENETIHIPSLKESAELEIAADIASKFQWRMLKQKKLNITRLKGRLFVNHGKHqllpenepggsSQTRPFLHWGSPDPENLLAELSKMGINGSVERCMTdaesedgftvkvqdpeksMIEVRAAVTVISAADKNLASRIVKAMENILEGI
MGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQWMKWEELELLPSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAFSSGLDIGACNWIISGAKGNIAYISGSNFASGHAMDFDYRAIQGsdlilysdlssldstedidQSSFSDDNNNWEELMNSLSNYDESVEEMEKLAFICSCAIDSVKAGGSVLIPINRVGVFLQLLEQIAIFMECSSLKIPIYIISSVAEELLAYTNTIPEWLCKQRQEKLFSGDPLFAHVKLIKEKKIHVFPAVHSPKLLMNWQEPCIVFSPHWSLRLGPTIHLLRRWSGDHNSLLVLENEVDAELAVLPFKPISMKVLQCSFLSGKKLQKVQPLLKILQPKLVLFPEEWRthvsfsdvtsfsvshYSENETIHIPSLKESAELEIAADIASKFQWRMLKQKKLNITRLKGRLFVNHGKHQLLPENEPGGSSQTRPFLHWGSPDPENLLAELSKMGINGSVERCMTDAESEDGFTVKVQDPEKSMIEVRAAVTVISAADKNLASRIVKAMENILEGI
***LGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQWMKWEELELLPSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAFSSGLDIGACNWIISGAKGNIAYISGSNFASGHAMDFDYRAIQGSDLILYSDL*************************************MEKLAFICSCAIDSVKAGGSVLIPINRVGVFLQLLEQIAIFMECSSLKIPIYIISSVAEELLAYTNTIPEWLCKQRQEKLFSGDPLFAHVKLIKEKKIHVFPAVHSPKLLMNWQEPCIVFSPHWSLRLGPTIHLLRRWSGDHNSLLVLENEVDAELAVLPFKPISMKVLQCSFLSGKKLQKVQPLLKILQPKLVLFPEEWRTHVSFSDVTSFSVSHYSENETIHIPSLKESAELEIAADIASKFQWRMLKQKKLNITRLKGRLFVNHGK*****************************************************************MIEVRAAVTVISAADKNLASRIVK*********
MGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYR****************************IALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAFSSGLDIGACNWIISGAKGNIAYISGSNFASGHAMDFDYRAIQGSDLILYSDLSSLDSTEDIDQSSFSDDNNNWEELM*************EKLAFICSCAIDSVKAGGSVLIPINRVGVFLQLLEQIAIFMECSSLKIPIYIISSVAEELLAYTNTIPEWLCKQRQEKLFSGDPLFAHVKLIKEKKIHVFPAVHSPKLLMNWQEPCIVFSPHWSLRLGPTIHLLRRWSGDHNSLLVLENEVDAELAVLPFKPISMKVLQCSFLSGKKLQKVQPLLKILQPKLVLFPEEWRT*********FSVSHYSENETIHIPSLKESAELEIAADI*********************RLFVNHGKHQ******************WGSPDPENLLAELSKMGINGS***************VKVQDPEKSMIEVRAAVTVISAADKNLASRIVKAMENILEGI
MGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQWMKWEELELLPSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAFSSGLDIGACNWIISGAKGNIAYISGSNFASGHAMDFDYRAIQGSDLILYSDLSSLDSTEDIDQSSFSDDNNNWEELMNSLSNYDESVEEMEKLAFICSCAIDSVKAGGSVLIPINRVGVFLQLLEQIAIFMECSSLKIPIYIISSVAEELLAYTNTIPEWLCKQRQEKLFSGDPLFAHVKLIKEKKIHVFPAVHSPKLLMNWQEPCIVFSPHWSLRLGPTIHLLRRWSGDHNSLLVLENEVDAELAVLPFKPISMKVLQCSFLSGKKLQKVQPLLKILQPKLVLFPEEWRTHVSFSDVTSFSVSHYSENETIHIPSLKESAELEIAADIASKFQWRMLKQKKLNITRLKGRLFVNHGKHQLLPE********TRPFLHWGSPDPENLLAELSKMGINGSVERCMTDAESEDGFTVKVQDPEKSMIEVRAAVTVISAADKNLASRIVKAMENILEGI
**MLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQWMKWEELELLPSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAFSSGLDIGACNWIISGAKGNIAYISGSNFASGHAMDFDYRAIQGSDLILYSDLSSLDSTEDIDQSSFSDDNNNWEELMNSLSNYDESVEEMEKLAFICSCAIDSVKAGGSVLIPINRVGVFLQLLEQIAIFMECSSLKIPIYIISSVAEELLAYTNTIPEWLCKQRQEKLFSGDPLFAHVKLIKEKKIHVFPAVHSPKLLMNWQEPCIVFSPHWSLRLGPTIHLLRRWSGDHNSLLVLENEVDAELAVLPFKPISMKVLQCSFLSGKKLQKVQPLLKILQPKLVLFPEEWRTHVSFSDVTSFSVSHYSENETIHIPSLKESAELEIAADIASKFQWRMLKQKKLNITRLKGRLFVNHGKHQLLPENEPGGSSQTRPFLHWGSPDPENLLAELSKMGINGSVERCMTDAESEDGFTVKVQDPEKSMIEVRAAVTVISAADKNLASRIVKAMENILEGI
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MGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQWMKWEELELLPSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAFSSGLDIGACNWIISGAKGNIAYISGSNFASGHAMDFDYRAIQGSDLILYSDLSSLDSTEDIDQSSFSDDNNNWEELMNSLSNYDESVEEMEKLAFICSCAIDSVKAGGSVLIPINRVGVFLQLLEQIAIFMECSSLKIPIYIISSVAEELLAYTNTIPEWLCKQRQEKLFSGDPLFAHVKLIKEKKIHVFPAVHSPKLLMNWQEPCIVFSPHWSLRLGPTIHLLRRWSGDHNSLLVLENEVDAELAVLPFKPISMKVLQCSFLSGKKLQKVQPLLKILQPKLVLFPEEWRTHVSFSDVTSFSVSHYSENETIHIPSLKESAELEIAADIASKFQWRMLKQKKLNITRLKGRLFVNHGKHQLLPENEPGGSSQTRPFLHWGSPDPENLLAELSKMGINGSVERCMTDAESEDGFTVKVQDPEKSMIEVRAAVTVISAADKNLASRIVKAMENILEGI
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query575 2.2.26 [Sep-21-2011]
A7SBF0660 Integrator complex subuni N/A no 0.902 0.786 0.259 4e-52
Q4R5Z4637 Integrator complex subuni N/A no 0.859 0.775 0.267 6e-49
Q9NV88658 Integrator complex subuni yes no 0.859 0.750 0.265 1e-48
Q5ZKK2658 Integrator complex subuni yes no 0.754 0.659 0.264 3e-47
Q2KJA6658 Integrator complex subuni yes no 0.756 0.661 0.267 4e-47
Q6DFF4658 Integrator complex subuni N/A no 0.704 0.615 0.267 1e-46
Q8K114658 Integrator complex subuni yes no 0.634 0.554 0.282 2e-45
Q54SH0712 Integrator complex subuni yes no 0.645 0.521 0.271 7e-36
Q9CWS4600 Integrator complex subuni no no 0.478 0.458 0.201 4e-08
Q3MHC2600 Integrator complex subuni no no 0.478 0.458 0.201 4e-08
>sp|A7SBF0|INT9_NEMVE Integrator complex subunit 9 homolog OS=Nematostella vectensis GN=ints9 PE=3 SV=1 Back     alignment and function desciption
 Score =  206 bits (524), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 153/590 (25%), Positives = 277/590 (46%), Gaps = 71/590 (12%)

Query: 3   MLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQWMKWEE 62
           ML LPF+T   GF+ KIY TE   +IG+ +M EL+            +  +G  W     
Sbjct: 111 MLALPFITEYSGFNGKIYATEPTIQIGRDLMLELVTFAERV-----PKRRNGNMWKNDNV 165

Query: 63  LELLPSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAFSSG 122
           +  LP+ L ++A  +    L         VK CISK+Q + + E+    GIL + A SSG
Sbjct: 166 IRCLPAPLNELANVKSWRVLYSK----HDVKACISKIQAVSYSEKLDLCGILQLSAHSSG 221

Query: 123 LDIGACNWIISGAKGNIAYISGSNFASGHAMDFDYRAIQGSDLILYSDLSSLDSTEDIDQ 182
             +G+ NW++      I+Y+S S+  + H +  +   ++ SD+++ + ++          
Sbjct: 222 FCLGSSNWMLESEYEKISYLSPSSSFTTHPLPLNQTVLKNSDVLIITGVTEA-------- 273

Query: 183 SSFSDDNNNWEELMNSLSNYDESVEEMEKLAFICSCAIDSVKAGGSVLIPINRVGVFLQL 242
                           + N D  + E       C+    +++AGG+VL+P    GV   L
Sbjct: 274 ---------------PIDNPDAMLGEF------CTHLASTLRAGGNVLVPCYPSGVLYDL 312

Query: 243 LEQIAIFMECSSLK-IPIYIISSVAEELLAYTNTIPEWLCKQRQEKLFSGDPLFAHVKLI 301
            E +  +++ + L  +PIY IS VA+  LAY+N   EWLC+ +Q K++  +P F H +L+
Sbjct: 313 FECLYTYLDNAKLGMVPIYFISPVADSSLAYSNIYGEWLCQSKQTKVYLPEPPFPHAELL 372

Query: 302 KEKKIHVFPAVHSPKLLMNWQEPCIVFSPHWSLRLGPTIHLLRRWS-GDHNSLLVLENEV 360
           KE ++ VF  +H+     +++ PC+VF+ H SLR G  +H +  W    +N+++  E + 
Sbjct: 373 KEARLKVFSNLHN-GFSSSFKTPCVVFTGHPSLRYGDAVHFMEIWGKSGNNTVIFTEPDF 431

Query: 361 DAELAVLPFKPISMKVLQCSFLSGKKLQKVQPLLKILQPKLVLFPEEW---------RTH 411
               A+ P++P++MK   C         +   LLK LQP+ ++ PE +         RT 
Sbjct: 432 PYLEALAPYQPLAMKTCYCPIDPRLNFAQANKLLKELQPRHLVMPESYSRPPVIHPHRTD 491

Query: 412 VSFSDVTSFSVSHYSENETIHIPSLKESAELEIAADIASKFQWRMLKQKKLNITRLKGRL 471
           ++  D    S++ ++  +   +P  +   ++ IA +++S    + ++   + +  L G L
Sbjct: 492 LTIED-PGCSLTTFNHLDVAALPISRSFEKVVIANELSSCLHPQHVR-PGVAVATLTGTL 549

Query: 472 FVNHGKHQLLP---------ENEPGGSSQTRPFLH---WGSPDPENLLAELSKMGINGSV 519
                K+ L P          +E G SS  +  L    WG+   ++ +  L K GI    
Sbjct: 550 VTKDNKYTLQPLEFLVEPKAGSEGGDSSTNKGQLSRHLWGTVQLDDFVRSLKKRGITD-- 607

Query: 520 ERCMTDAESEDG-FTVKVQDPEKSMIEVRAAVTVISAADKNLASRIVKAM 568
                + ES  G  T+ + + +  ++  R +  +I+  ++ L  RI  A+
Sbjct: 608 ----VNVESSGGEHTIHLPNDDAMILLDRGSTHIITHGNEELRIRIRDAL 653
Component of the Integrator complex, a complex involved in the small nuclear RNAs (snRNA) U1 and U2 transcription and in their 3'-box-dependent processing.
Nematostella vectensis (taxid: 45351)
>sp|Q4R5Z4|INT9_MACFA Integrator complex subunit 9 OS=Macaca fascicularis GN=INTS9 PE=2 SV=1 Back     alignment and function description
>sp|Q9NV88|INT9_HUMAN Integrator complex subunit 9 OS=Homo sapiens GN=INTS9 PE=1 SV=2 Back     alignment and function description
>sp|Q5ZKK2|INT9_CHICK Integrator complex subunit 9 OS=Gallus gallus GN=INTS9 PE=2 SV=1 Back     alignment and function description
>sp|Q2KJA6|INT9_BOVIN Integrator complex subunit 9 OS=Bos taurus GN=INTS9 PE=2 SV=1 Back     alignment and function description
>sp|Q6DFF4|INT9_XENLA Integrator complex subunit 9 OS=Xenopus laevis GN=ints9 PE=2 SV=1 Back     alignment and function description
>sp|Q8K114|INT9_MOUSE Integrator complex subunit 9 OS=Mus musculus GN=Ints9 PE=2 SV=1 Back     alignment and function description
>sp|Q54SH0|INT9_DICDI Integrator complex subunit 9 homolog OS=Dictyostelium discoideum GN=ints9 PE=3 SV=1 Back     alignment and function description
>sp|Q9CWS4|INT11_MOUSE Integrator complex subunit 11 OS=Mus musculus GN=Cpsf3l PE=2 SV=1 Back     alignment and function description
>sp|Q3MHC2|INT11_RAT Integrator complex subunit 11 OS=Rattus norvegicus GN=Cpsf3l PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query575
359495046 774 PREDICTED: integrator complex subunit 9 1.0 0.742 0.627 0.0
255558732 705 conserved hypothetical protein [Ricinus 0.998 0.814 0.597 0.0
449520481 680 PREDICTED: integrator complex subunit 9 0.994 0.841 0.573 0.0
449457454 693 PREDICTED: integrator complex subunit 9 0.994 0.825 0.573 0.0
356541557 794 PREDICTED: LOW QUALITY PROTEIN: integrat 0.998 0.722 0.541 1e-179
297829304 699 hypothetical protein ARALYDRAFT_896920 [ 1.0 0.822 0.513 1e-174
30680341 699 integrator complex subunit 9 [Arabidopsi 1.0 0.822 0.506 1e-165
147863921665 hypothetical protein VITISV_004722 [Viti 0.885 0.765 0.523 1e-156
357456769536 Integrator complex subunit [Medicago tru 0.845 0.906 0.506 1e-147
414879106673 TPA: hypothetical protein ZEAMMB73_92827 0.987 0.843 0.426 1e-132
>gi|359495046|ref|XP_002265081.2| PREDICTED: integrator complex subunit 9 homolog [Vitis vinifera] gi|296081277|emb|CBI17721.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  709 bits (1829), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 369/588 (62%), Positives = 444/588 (75%), Gaps = 13/588 (2%)

Query: 1   MGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQWMKW 60
           MGMLGLPFL+R+ GF AKIY+TE  ARIGQL+ME+L+ MN E+RQFYG EES  PQWM W
Sbjct: 187 MGMLGLPFLSRVNGFRAKIYVTEVTARIGQLLMEDLVLMNKEFRQFYGCEESGLPQWMNW 246

Query: 61  EELELLPSALRKIALGEDGSELGGGCPCIA--HVKDCISKVQTLRFGEEACYNGILIIKA 118
           E+LE LPS  R+I LGEDG ELGG  P  +   VK C+ KV TL++ +E CYNG LIIKA
Sbjct: 247 EKLESLPSLFREIVLGEDGVELGGWMPLYSADDVKGCMQKVHTLKYAQEVCYNGTLIIKA 306

Query: 119 FSSGLDIGACNWIISGAKGNIAYISGSNFASGHAMDFDYRAIQGSDLILYSDLSSLDSTE 178
            SSGL+IG CNW I+G K NIA +S S F S HAM+FDY A++G+DLI+YSDLSS    +
Sbjct: 307 VSSGLEIGTCNWTINGPKRNIACLSSSIFNSSHAMNFDYHALRGNDLIIYSDLSSPVLED 366

Query: 179 DIDQSSFS----------DDNNNWEELMNSLSNYDESVEEMEKLAFICSCAIDSVKAGGS 228
             D S +S            +N+ E     L +  ES+EEMEKL FICSC IDSVKAGGS
Sbjct: 367 VKDNSCYSAPTSQKSSTLSADNDQEASAELLLSTSESLEEMEKLNFICSCIIDSVKAGGS 426

Query: 229 VLIPINRVGVFLQLLEQIAIFMECSSLKIPIYIISSVAEELLAYTNTIPEWLCKQRQEKL 288
           VLIPI R+G+ LQLLE I++ +E SSLK+PI+IISSVAEELLA+TN IPEWLCKQRQEKL
Sbjct: 427 VLIPIGRLGIILQLLELISLSLEASSLKVPIFIISSVAEELLAFTNIIPEWLCKQRQEKL 486

Query: 289 FSGDPLFAHVKLIKEKKIHVFPAVHSPKLLMNWQEPCIVFSPHWSLRLGPTIHLLRRWSG 348
           FSG+P FAH +LIKEKK+HVFPAVHSP LL  WQEPCI FSPHWSLRLGP +HLLRRWSG
Sbjct: 487 FSGEPFFAHTQLIKEKKLHVFPAVHSPNLLKIWQEPCIAFSPHWSLRLGPVVHLLRRWSG 546

Query: 349 DHNSLLVLENEVDAELAVLPFKPISMKVLQCSFLSGKKLQKVQPLLKILQPKLVLFPEEW 408
           D NSLL++E  VDA+LA+LPFKP++MKVLQCSFLSG KLQKVQPLLKILQPK VLFPE+ 
Sbjct: 547 DENSLLIMEEGVDADLALLPFKPMAMKVLQCSFLSGIKLQKVQPLLKILQPKFVLFPEDL 606

Query: 409 RTHVSFSDVTSFSVSHYSENETIHIPSLKESAELEIAADIASKFQWRMLKQKKLNITRLK 468
           R  VS+SD  S +  +Y ENET+ +PSLK S+ELEIAAD+ S    R L  + + I RLK
Sbjct: 607 RQLVSYSDTNSHAFFYYCENETLPVPSLKNSSELEIAADLVSLIHCRRLTAESIGIGRLK 666

Query: 469 GRLFVNHGKHQLLPENEPGGSSQTR-PFLHWGSPDPENLLAELSKMGINGSVERCMTDAE 527
           G   V HGKHQL   +E   SSQ+R P LHWGS D E LLA L KMGI GSVE+  +D +
Sbjct: 667 GDFSVTHGKHQLHSGSEQADSSQSRPPLLHWGSLDLERLLAVLEKMGIRGSVEQGNSDTD 726

Query: 528 SEDGFTVKVQDPEKSMIEVRAAVTVISAADKNLASRIVKAMENILEGI 575
           SE+   V V +P K++IEVR   T+ISA++++L+S I +A++ IL G+
Sbjct: 727 SENARVVHVYEPNKALIEVRENSTIISASNESLSSLIFEAVDGILSGL 774

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255558732|ref|XP_002520390.1| conserved hypothetical protein [Ricinus communis] gi|223540437|gb|EEF42006.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|449520481|ref|XP_004167262.1| PREDICTED: integrator complex subunit 9 homolog, partial [Cucumis sativus] Back     alignment and taxonomy information
>gi|449457454|ref|XP_004146463.1| PREDICTED: integrator complex subunit 9 homolog [Cucumis sativus] Back     alignment and taxonomy information
>gi|356541557|ref|XP_003539241.1| PREDICTED: LOW QUALITY PROTEIN: integrator complex subunit 9-like [Glycine max] Back     alignment and taxonomy information
>gi|297829304|ref|XP_002882534.1| hypothetical protein ARALYDRAFT_896920 [Arabidopsis lyrata subsp. lyrata] gi|297328374|gb|EFH58793.1| hypothetical protein ARALYDRAFT_896920 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|30680341|ref|NP_187409.2| integrator complex subunit 9 [Arabidopsis thaliana] gi|332641036|gb|AEE74557.1| integrator complex subunit 9 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|147863921|emb|CAN78953.1| hypothetical protein VITISV_004722 [Vitis vinifera] Back     alignment and taxonomy information
>gi|357456769|ref|XP_003598665.1| Integrator complex subunit [Medicago truncatula] gi|355487713|gb|AES68916.1| Integrator complex subunit [Medicago truncatula] Back     alignment and taxonomy information
>gi|414879106|tpg|DAA56237.1| TPA: hypothetical protein ZEAMMB73_928273 [Zea mays] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query575
TAIR|locus:2079696699 AT3G07530 "AT3G07530" [Arabido 1.0 0.822 0.488 4.7e-151
UNIPROTKB|H7BYQ6552 INTS9 "Integrator complex subu 0.577 0.601 0.262 2.9e-43
UNIPROTKB|Q9NV88658 INTS9 "Integrator complex subu 0.577 0.504 0.262 1.2e-42
UNIPROTKB|F1RJQ5576 INTS9 "Uncharacterized protein 0.570 0.569 0.273 1.4e-42
UNIPROTKB|Q2KJA6658 INTS9 "Integrator complex subu 0.568 0.496 0.272 2.9e-42
UNIPROTKB|F6XI08658 INTS9 "Uncharacterized protein 0.568 0.496 0.275 3.8e-42
UNIPROTKB|F1MMA6658 INTS9 "Integrator complex subu 0.568 0.496 0.272 5.2e-42
RGD|1311539659 Ints9 "integrator complex subu 0.577 0.503 0.273 7.5e-42
MGI|MGI:1098533658 Ints9 "integrator complex subu 0.573 0.501 0.269 8.7e-42
UNIPROTKB|Q5ZKK2658 INTS9 "Integrator complex subu 0.577 0.504 0.270 2.8e-41
TAIR|locus:2079696 AT3G07530 "AT3G07530" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1474 (523.9 bits), Expect = 4.7e-151, P = 4.7e-151
 Identities = 287/588 (48%), Positives = 392/588 (66%)

Query:     1 MGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQWMKW 60
             MG+LGLPFLT+  GF AKIY+TE  A+IGQLMME+++ M+ E+R F+G + SS P W+K 
Sbjct:   112 MGLLGLPFLTQNPGFFAKIYMTEVTAKIGQLMMEDIVSMHKEFRCFHGPDNSSFPGWIKN 171

Query:    61 EELELLPSALRKIALGEDGSELGGGCPCIA--HVKDCISKVQTLRFGEEACYNGILIIKA 118
              + E +P+ L+K+  GE G +LG      +   ++ C+ KVQ ++F EE CYNG LIIKA
Sbjct:   172 LDSEQVPALLKKVVFGESGDDLGSWMRLYSLDDIESCMKKVQGVKFAEEVCYNGTLIIKA 231

Query:   119 FSSGLDIGACNWIISGAKGNIAYISGSNFASGHAMDFDYRAIQGXXXXXXXXXXXXXXXX 178
              SSGLDIGACNW+I+G  G+++Y+S S F S HA  FD+  ++                 
Sbjct:   232 LSSGLDIGACNWLINGPNGSLSYVSDSIFVSHHARSFDFHGLKETDVLIYSDFSSLQSAE 291

Query:   179 XXXQSSFS-DDNNNW----EELMNSLSNYDESVEEMEKLAFICSCAIDSVKAGGSVLIPI 233
                    S D +NN+     +  +SL N ++S+EEMEKLAF+CSCA +S  AGGS LI I
Sbjct:   292 VTEDGCISPDSDNNYISTISDNKDSLLNTEDSLEEMEKLAFVCSCAAESADAGGSTLITI 351

Query:   234 NRVGVFLQLLEQIAIFMECSSLKIPIYIISSVAEELLAYTNTIPEWLCKQRQEKLFSGDP 293
              R+G+ LQLLE ++  +E SSLK+PI++ISSVAEELLAYTNTIPEWLC+QRQEKL SG+P
Sbjct:   352 TRIGIVLQLLELLSNSLESSSLKVPIFVISSVAEELLAYTNTIPEWLCEQRQEKLISGEP 411

Query:   294 LFAHVKLIKEKKIHVFPAVHSPKLLM----NWQEPCIVFSPHWSLRLGPTIHLLRRWSGD 349
              F H+K IK KKIH+FPA+HSP L+     +WQEPCIVF+ HWSLRLGP++ LL+RW GD
Sbjct:   412 SFGHLKFIKNKKIHLFPAIHSPNLIYANRTSWQEPCIVFASHWSLRLGPSVQLLQRWRGD 471

Query:   350 HNSLLVLENEVDAELAVLPFKPISMKVLQCSFLSGKKLQKVQPLLKILQPKLVLFPEEWR 409
               SLLVLE+ + + L +LPF+PI+MK+LQCSFLSG +LQK+  L+ +LQPK+ L P+   
Sbjct:   472 PKSLLVLEDGISSGLGLLPFRPIAMKILQCSFLSGIRLQKLPTLVSVLQPKIFLVPDAVN 531

Query:   410 XXXXXXXXXXXXXXXYSENETIHIPSLKESAELEIAADIASKFQWRMLKQKK-LNITRLK 468
                            Y EN+T+H+P + ++  +EI  D+ASK  WR L+Q++   I RLK
Sbjct:   532 QRISLAAIKTISILNYFENKTLHVPRIVDNPSVEITTDLASKLSWRKLRQRESFGIARLK 591

Query:   469 GRLFVNHGKHQLLPENEPGGSS-QTRPFLHWGSPDPENLLAELSKMGINGSVERCMTDAE 527
             G L +  GKH+L+   E   SS + RP  HWGS  PE LL  L KMGI GS+E+   D  
Sbjct:   592 GGLLMEDGKHRLVSGLEQEESSGKARPLRHWGSVAPELLLDALLKMGIKGSIEQSTGDNG 651

Query:   528 SEDGFTVKVQDPEKSMIEVRAAVTVISAADKNLASRIVKAMENILEGI 575
             SED   + +++P   +IE     T I   D+N+ S++ +A++ +L+GI
Sbjct:   652 SEDKSIIHIENPNSGLIEFSEMGTAIITGDENVVSQVFQAIDGVLDGI 699
GO:0003674 "molecular_function" evidence=ND
GO:0005634 "nucleus" evidence=ISM
GO:0008150 "biological_process" evidence=ND
UNIPROTKB|H7BYQ6 INTS9 "Integrator complex subunit 9" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q9NV88 INTS9 "Integrator complex subunit 9" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1RJQ5 INTS9 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|Q2KJA6 INTS9 "Integrator complex subunit 9" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F6XI08 INTS9 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1MMA6 INTS9 "Integrator complex subunit 9" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
RGD|1311539 Ints9 "integrator complex subunit 9" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:1098533 Ints9 "integrator complex subunit 9" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|Q5ZKK2 INTS9 "Integrator complex subunit 9" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
scaffold_300890.1
annotation not avaliable (699 aa)
(Arabidopsis lyrata)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query575
smart01027126 smart01027, Beta-Casp, Beta-Casp domain 2e-15
pfam10996124 pfam10996, Beta-Casp, Beta-Casp domain 2e-13
COG1236427 COG1236, YSH1, Predicted exonuclease of the beta-l 9e-06
COG1782637 COG1782, COG1782, Predicted metal-dependent RNase, 1e-05
TIGR03675630 TIGR03675, arCOG00543, arCOG00543 universal archae 0.001
>gnl|CDD|214983 smart01027, Beta-Casp, Beta-Casp domain Back     alignment and domain information 
 Score = 73.0 bits (180), Expect = 2e-15
 Identities = 25/121 (20%), Positives = 52/121 (42%), Gaps = 11/121 (9%)

Query: 239 FLQLLEQIAIFMECSSL-KIPIYIISSVAEELLAYTNTIPEWLCKQRQEKLFSGD--PLF 295
             +LL  +        L  +PIY+ S +A        + PEW+  + +++   G     F
Sbjct: 1   TQELLLILEELWREGELPNVPIYLDSPMAARATEIYKSYPEWMSDEIRKRFEQGRNPFDF 60

Query: 296 AHVKLIKEKKIHVFPAVHSPKLLMNWQEPCIVFSPHWSLRLGPTIHLLRRWSGDHNSLLV 355
            ++K +K  +          K L +++ P ++ +    L  G + H L+R + D  + ++
Sbjct: 61  KNLKFVKSLEES--------KRLNDYKGPKVIIASSGMLTGGRSRHYLKRLAPDPRNTVI 112

Query: 356 L 356
           L
Sbjct: 113 L 113

The beta-CASP domain is found C terminal to the beta-lactamase domain in pre-mRNA 3'-end-processing endonuclease. The active site of this enzyme is located at the interface of these two domains. Length = 126
>gnl|CDD|220932 pfam10996, Beta-Casp, Beta-Casp domain Back     alignment and domain information
>gnl|CDD|224157 COG1236, YSH1, Predicted exonuclease of the beta-lactamase fold involved in RNA processing [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|224696 COG1782, COG1782, Predicted metal-dependent RNase, consists of a metallo-beta-lactamase domain and an RNA-binding KH domain [General function prediction only] Back     alignment and domain information
>gnl|CDD|188365 TIGR03675, arCOG00543, arCOG00543 universal archaeal KH-domain/beta-lactamase-domain protein Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 575
KOG1138653 consensus Predicted cleavage and polyadenylation s 100.0
KOG1136501 consensus Predicted cleavage and polyadenylation s 100.0
KOG1135764 consensus mRNA cleavage and polyadenylation factor 100.0
KOG1137668 consensus mRNA cleavage and polyadenylation factor 100.0
COG1782637 Predicted metal-dependent RNase, consists of a met 100.0
TIGR03675630 arCOG00543 arCOG00543 universal archaeal KH-domain 100.0
COG1236427 YSH1 Predicted exonuclease of the beta-lactamase f 100.0
TIGR00649422 MG423 conserved hypothetical protein. Contains an 99.93
PF10996126 Beta-Casp: Beta-Casp domain; InterPro: IPR022712 T 99.89
PF13299161 CPSF100_C: Cleavage and polyadenylation factor 2 C 99.44
COG0595555 mRNA degradation ribonucleases J1/J2 (metallo-beta 99.38
PF0752143 RMMBL: RNA-metabolising metallo-beta-lactamase; In 99.12
KOG1361481 consensus Predicted hydrolase involved in interstr 98.16
TIGR03307238 PhnP phosphonate metabolism protein PhnP. This fam 97.24
PF12706194 Lactamase_B_2: Beta-lactamase superfamily domain; 96.3
PF07522110 DRMBL: DNA repair metallo-beta-lactamase; InterPro 95.47
PRK11244250 phnP carbon-phosphorus lyase complex accessory pro 95.29
smart00849183 Lactamase_B Metallo-beta-lactamase superfamily. Ap 94.96
TIGR02108302 PQQ_syn_pqqB coenzyme PQQ biosynthesis protein B. 94.92
TIGR02651299 RNase_Z ribonuclease Z. Processing of the 3-prime 94.61
TIGR02649303 true_RNase_BN ribonuclease BN. Members of this pro 94.0
PRK05452479 anaerobic nitric oxide reductase flavorubredoxin; 90.68
PRK11921394 metallo-beta-lactamase/flavodoxin domain-containin 89.46
PRK00685228 metal-dependent hydrolase; Provisional 89.27
TIGR02650277 RNase_Z_T_toga ribonuclease Z, Thermotoga type. Me 87.82
PRK11709355 putative L-ascorbate 6-phosphate lactonase; Provis 86.69
PF13483163 Lactamase_B_3: Beta-lactamase superfamily domain; 86.61
PRK05184302 pyrroloquinoline quinone biosynthesis protein PqqB 86.32
PRK02113252 putative hydrolase; Provisional 84.57
>KOG1138 consensus Predicted cleavage and polyadenylation specificity factor (CPSF subunit) [RNA processing and modification] Back     alignment and domain information 
Probab=100.00  E-value=1.6e-93  Score=732.22  Aligned_cols=525  Identities=31%  Similarity=0.551  Sum_probs=477.3

Q ss_pred             CcccccchhccccCCcceEEeeHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCccchhhhHhhhchhhHhhhhccCCCC
Q 008169            1 MGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQWMKWEELELLPSALRKIALGEDGS   80 (575)
Q Consensus         1 ~~~~aLP~l~~~~gf~g~IY~T~pT~~l~~llL~D~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~   80 (575)
                      |||+||||+||++||.|+||||+||+++||+||+|++.+.+++     +++++++.|+++...+.+|+++++++      
T Consensus       106 ~~mlgLPfiTentGF~gkiY~TE~t~qiGrllMEelv~fier~-----p~~~S~~~Wk~k~~~~~lpsplk~~~------  174 (653)
T KOG1138|consen  106 MGMLGLPFITENTGFFGKIYATEPTAQIGRLLMEELVSFIERF-----PKASSAPLWKKKLDSELLPSPLKKAV------  174 (653)
T ss_pred             hhhcccceeecCCCceeEEEEechHHHHHHHHHHHHHHHHHhc-----cccccchhhhhhhhhhhcCCCchhhc------
Confidence            7999999999999999999999999999999999999999863     67788899999988899999998854      


Q ss_pred             CCCCCCchH--HHHHHHHhcceEecCCCEEEeCCceEEEeecCCccccceEEEEEeCCeeEEEecCCCCCCCCCCCCCCC
Q 008169           81 ELGGGCPCI--AHVKDCISKVQTLRFGEEACYNGILIIKAFSSGLDIGACNWIISGAKGNIAYISGSNFASGHAMDFDYR  158 (575)
Q Consensus        81 ~~~~~~~ly--~dv~~~~~~i~~v~y~q~~~l~g~i~it~~~AGHiLGsa~~~I~~~~~~I~YtgD~s~~~~~~~~~d~~  158 (575)
                      ....|+++|  +||+.|+++++.|+|+|++++.|.+.+||.+|||.+|||+|.|...++++-|++|++..++|+.++|++
T Consensus       175 ~~~~Wr~~ysl~Dv~sclsKVq~v~f~ekidlfga~~vtplsSG~~lGSsnW~I~t~nek~sYvS~Ss~ltth~r~md~a  254 (653)
T KOG1138|consen  175 FLGSWRRLYSLDDVESCLSKVQGVGFAEKIDLFGALIVTPLSSGYDLGSSNWLINTPNEKLSYVSGSSFLTTHPRPMDQA  254 (653)
T ss_pred             cccceeeeeehhHHHHHHHhheecccceeeeccceEEEEeccccccccccceEEecCCcceEEEecCcccccCCcccccc
Confidence            467899999  999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCcEEEEcCCCCCCCCccccCCcccCCCCchhhhhhccCCCCccHHHHHHHHHHHHHHHHHHhcCCeEEEecCChhH
Q 008169          159 AIQGSDLILYSDLSSLDSTEDIDQSSFSDDNNNWEELMNSLSNYDESVEEMEKLAFICSCAIDSVKAGGSVLIPINRVGV  238 (575)
Q Consensus       159 ~l~~~DvLI~e~~st~~~~~~~~~~~li~~~~~~e~~~~y~~~~~~~~~~~e~l~~l~~~I~~tl~~GG~VLIP~fa~GR  238 (575)
                      .|+.+|+||++++++.+           +.+++                  ++..+||..|..|+++||+||+|+++.|.
T Consensus       255 ~Lk~~Dvli~T~lsql~-----------tanpd------------------~m~gelc~nvt~~~rn~GsvL~PcyPsGv  305 (653)
T KOG1138|consen  255 GLKETDVLIYTGLSQLP-----------TANPD------------------EMGGELCKNVTLTGRNHGSVLLPCYPSGV  305 (653)
T ss_pred             ccccccEEEEecccccc-----------cCCcc------------------chhhhHHHHHHHHhhcCCceeeeccCCch
Confidence            99999999999888875           23333                  26678999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhCCCc-ccEEEECchHHHHHHHHHHhHHhhhHHHHHhhccCCCCCcchhhhhcccccccCCCCChhh
Q 008169          239 FLQLLEQIAIFMECSSLK-IPIYIISSVAEELLAYTNTIPEWLCKQRQEKLFSGDPLFAHVKLIKEKKIHVFPAVHSPKL  317 (575)
Q Consensus       239 ~qELl~~L~~~~~~~~l~-vpIy~~s~~a~~~~~~~~~~~ewl~~~~~~~~~~~e~pF~~~~l~~~~~l~~~~~i~~~~~  317 (575)
                      +.||+++|.++.++.++. +||||+||+|+.++++.++..|||+.++|+++|.|++||+|..+++++|++++.++.+. +
T Consensus       306 iydl~Ecls~~idna~ls~~P~yfISpvadSsla~s~ilaEwls~akqnkvylpe~p~~hs~lI~~~rlkiy~sl~g~-f  384 (653)
T KOG1138|consen  306 IYDLIECLSQDIDNAGLSDTPIYFISPVADSSLATSDILAEWLSLAKQNKVYLPEAPFPHSTLITINRLKIYLSLLGL-F  384 (653)
T ss_pred             hhHHHHHhhhcccccCCcCCcceEecccchhhhhHHHHHHHHHHhhhccceeccCCCCCCceEEeecceeehHHHHHH-H
Confidence            999999999999999986 99999999999999999999999999999999999999999999999999999999864 8


Q ss_pred             hhccCCCEEEEecCCCCCcchHHHHHHHHhCCCCCcEEec-CccchhhccCCCceeeeEEEEeecccCCChhhHHHHHhh
Q 008169          318 LMNWQEPCIVFSPHWSLRLGPTIHLLRRWSGDHNSLLVLE-NEVDAELAVLPFKPISMKVLQCSFLSGKKLQKVQPLLKI  396 (575)
Q Consensus       318 ~~~~~~P~VV~as~gml~~G~s~~~l~~~~~d~~N~Iil~-g~~~~~~~l~~~~~v~~~v~~~~fsaHaD~~~l~~~i~~  396 (575)
                      .+++++|||||++|++|++|+++|+++-|+.+|+|++|+| |+++++..+.||+|+.||+.+|||..+.|++++.+++++
T Consensus       385 Sndfrqpcvvf~~H~SlRfgdv~h~~e~~g~sp~NsvI~tdpD~~~~~vl~PfrpLamK~i~cpidtrlnfqql~kLlke  464 (653)
T KOG1138|consen  385 SNDFRQPCVVFMGHPSLRFGDVVHFLECWGLSPKNSVIFTDPDFSYLLVLAPFRPLAMKIIYCPIDTRLNFQQLPKLLKE  464 (653)
T ss_pred             hhhcccceeEecCCcchhhhHHHHHHHHhcCCCCCceEEeCCCCchhhhhcCCccccceeEeccccccccHHHHHHHHHH
Confidence            8999999999999999999999999999999999999986 568999999999999999999999999999999999999


Q ss_pred             cCCCEEEEecCCccccccccc------CCceeeecCCCcEEEeCCCCeeEEEEecHHHHhhhhhhhhcccC-cceeeEEE
Q 008169          397 LQPKLVLFPEEWRTHVSFSDV------TSFSVSHYSENETIHIPSLKESAELEIAADIASKFQWRMLKQKK-LNITRLKG  469 (575)
Q Consensus       397 ~~P~~vilvHGe~~~~~~l~~------~~~~v~~p~~~e~i~l~~~~~~~~v~l~~~l~~~l~~~~~~~~~-~~~a~v~g  469 (575)
                      +||+.|+++..+.+.+.....      .-+++.+...+|.+++|.+++..+|.++++||++|.|++++ ++ +.+|+++|
T Consensus       465 lqPk~vlcpeaytqp~~~ap~~~i~~~d~~pi~t~~c~ei~~lp~Krkl~~veItpela~kLs~ke~~-~~~~~iAtl~~  543 (653)
T KOG1138|consen  465 LQPKIVLCPEAYTQPIPLAPIKTISILDYFPIKTLHCPEIVDLPNKRKLVSVEITPELASKLSPKELR-QGEFGIATLKG  543 (653)
T ss_pred             hCCCEEEChhhhcCCCCccchheehhccccccceeehhHHhcCccccceeEEEEcHHHHhhCChhhcc-CceeEEEEEEE
Confidence            999999999999988776652      23467788889999999999999999999999999999997 55 89999999


Q ss_pred             EEEEeCCeeeeecCCCCCC----CCCCC------CceEecCCChHHHHHHHHHCCCceEEeeccccCcCCCceEEEEeCC
Q 008169          470 RLFVNHGKHQLLPENEPGG----SSQTR------PFLHWGSPDPENLLAELSKMGINGSVERCMTDAESEDGFTVKVQDP  539 (575)
Q Consensus       470 ~l~~~~~~~~l~~~~~~~~----~~~~~------~~~~~g~~~~~~~~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  539 (575)
                      +|.++|++|.|+|...+..    ++...      .++..|++.++++++.|.+.||.......     +..+.+|...+ 
T Consensus       544 ~L~~~d~kh~Lvp~~~~~k~ek~s~~~~p~lk~lk~~~a~ei~vda~~k~~ik~~~s~itvdn-----~g~g~~i~~~e-  617 (653)
T KOG1138|consen  544 VLLMKDGKHRLVPAKVSLKQEKSSSKARPVLKVLKNSVAGEILVDALLKMLIKGGFSQITVDN-----TGEGKSIILIE-  617 (653)
T ss_pred             EEEEecCceeeeecccchhhhhcccccchHHhhhhhccCcccchHHHHHHHhhcchhheeeec-----CCCceEEEecc-
Confidence            9999999999999655421    11111      24677999999999999999998876432     33466666666 


Q ss_pred             CCcEEEEcCceeeEecC-CHHHHHHHHHHHHHhhc
Q 008169          540 EKSMIEVRAAVTVISAA-DKNLASRIVKAMENILE  573 (575)
Q Consensus       540 ~~~~i~~~~~~t~I~~~-~~~~R~~l~~~~~~~l~  573 (575)
                      ++++|+++++.|||+|+ +..+|..++|+...++.
T Consensus       618 ~enlikf~Em~t~Ii~~dd~~v~~~~~di~~~llq  652 (653)
T KOG1138|consen  618 NENLIKFEEMGTHIICGDDNVVRQVLRDIDGKLLQ  652 (653)
T ss_pred             CchhhhhhhccceEEECCCchhhhhhHhhhhhhcc
Confidence            66799999999999999 99999999999988763

>KOG1136 consensus Predicted cleavage and polyadenylation specificity factor (CPSF subunit) [RNA processing and modification] Back     alignment and domain information
>KOG1135 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT2 (CPSF subunit) [RNA processing and modification] Back     alignment and domain information
>KOG1137 consensus mRNA cleavage and polyadenylation factor II complex, BRR5 (CPSF subunit) [RNA processing and modification] Back     alignment and domain information
>COG1782 Predicted metal-dependent RNase, consists of a metallo-beta-lactamase domain and an RNA-binding KH domain [General function prediction only] Back     alignment and domain information
>TIGR03675 arCOG00543 arCOG00543 universal archaeal KH-domain/beta-lactamase-domain protein Back     alignment and domain information
>COG1236 YSH1 Predicted exonuclease of the beta-lactamase fold involved in RNA processing [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR00649 MG423 conserved hypothetical protein Back     alignment and domain information
>PF10996 Beta-Casp: Beta-Casp domain; InterPro: IPR022712 The beta-CASP domain is found C-terminal to the beta-lactamase domain in pre-mRNA 3'-end-processing endonuclease Back     alignment and domain information
>PF13299 CPSF100_C: Cleavage and polyadenylation factor 2 C-terminal Back     alignment and domain information
>COG0595 mRNA degradation ribonucleases J1/J2 (metallo-beta-lactamase superfamily) [Translation, ribosomal structure and biogenesis; Replication, recombination and repair] Back     alignment and domain information
>PF07521 RMMBL: RNA-metabolising metallo-beta-lactamase; InterPro: IPR011108 The metallo-beta-lactamase fold contains five sequence motifs Back     alignment and domain information
>KOG1361 consensus Predicted hydrolase involved in interstrand cross-link repair [Replication, recombination and repair] Back     alignment and domain information
>TIGR03307 PhnP phosphonate metabolism protein PhnP Back     alignment and domain information
>PF12706 Lactamase_B_2: Beta-lactamase superfamily domain; PDB: 3BV6_F 1WW1_A 2E7Y_A 3RPC_D 3ZWF_A 3JXP_A 1XTO_A 2CBN_A 3G1P_B 3P2U_A Back     alignment and domain information
>PF07522 DRMBL: DNA repair metallo-beta-lactamase; InterPro: IPR011084 The metallo-beta-lactamase fold contains five sequence motifs Back     alignment and domain information
>PRK11244 phnP carbon-phosphorus lyase complex accessory protein; Provisional Back     alignment and domain information
>smart00849 Lactamase_B Metallo-beta-lactamase superfamily Back     alignment and domain information
>TIGR02108 PQQ_syn_pqqB coenzyme PQQ biosynthesis protein B Back     alignment and domain information
>TIGR02651 RNase_Z ribonuclease Z Back     alignment and domain information
>TIGR02649 true_RNase_BN ribonuclease BN Back     alignment and domain information
>PRK05452 anaerobic nitric oxide reductase flavorubredoxin; Provisional Back     alignment and domain information
>PRK11921 metallo-beta-lactamase/flavodoxin domain-containing protein; Provisional Back     alignment and domain information
>PRK00685 metal-dependent hydrolase; Provisional Back     alignment and domain information
>TIGR02650 RNase_Z_T_toga ribonuclease Z, Thermotoga type Back     alignment and domain information
>PRK11709 putative L-ascorbate 6-phosphate lactonase; Provisional Back     alignment and domain information
>PF13483 Lactamase_B_3: Beta-lactamase superfamily domain; PDB: 1VJN_B 3KL7_A Back     alignment and domain information
>PRK05184 pyrroloquinoline quinone biosynthesis protein PqqB; Provisional Back     alignment and domain information
>PRK02113 putative hydrolase; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query575
3af5_A651 The Crystal Structure Of An Archaeal Cpsf Subunit, 1e-04
>pdb|3AF5|A Chain A, The Crystal Structure Of An Archaeal Cpsf Subunit, Ph1404 From Pyrococcus Horikoshii Length = 651 Back     alignment and structure 
Iteration: 1

 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/162 (21%), Positives = 75/162 (46%), Gaps = 13/162 (8%)
Query: 207 EEMEKLAFICSCAIDSVKAGGSVLIPINRVGVFLQLLEQIAIFMECSSLKIPIYIISSVA 266
           EE EK   +     +++K GG VLIP   VG   +++  +  +     +++PIY+   + 
Sbjct: 406 EEAEKR--LIEVIHNTIKRGGKVLIPAMAVGRAQEVMMVLEEYARIGGIEVPIYLDGMIW 463
Query: 267 EELLAYTNTIPEWLCKQRQEKLFSG--DPLFAHVKLIKEKKIHVFPAVHSPKLLMNWQEP 324
           E    +T   PE+L ++ +E++F    +P  + +        H        + +++  EP
Sbjct: 464 EATAIHT-AYPEYLSRRLREQIFKEGYNPFLSEI-------FHPVANSRERQDIIDSNEP 515
Query: 325 CIVFSPHWSLRLGPTIHLLRRWSGD-HNSLLVLENEVDAELA 365
            I+ +    L  GP++   ++ + D  NS++ +  + +  L 
Sbjct: 516 AIIIASSGMLVGGPSVEYFKQLAPDPKNSIIFVSYQAEGTLG 557

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query575
2i7x_A 717 Protein CFT2; polyadenylation, metallo-B-lactamase 5e-24
2i7t_A459 Cleavage and polyadenylation specificity factor 73 2e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 9e-09
3af5_A651 Putative uncharacterized protein PH1404; archaeal 1e-07
3iek_A431 Ribonuclease TTHA0252; metallo beta lactamase fold 4e-07
2xr1_A640 Cleavage and polyadenylation specificity factor 1 1e-05
2ycb_A636 Beta-CAsp RNAse, cleavage and polyadenylation spec 2e-05
>2i7x_A Protein CFT2; polyadenylation, metallo-B-lactamase, PRE-mRNA processing, artemis, V(D)J recombination, double-strand break repair; 2.50A {Saccharomyces cerevisiae} SCOP: d.157.1.10 Length = 717 Back     alignment and structure
 Score =  105 bits (263), Expect = 5e-24
 Identities = 46/368 (12%), Positives = 102/368 (27%), Gaps = 86/368 (23%)

Query: 5   GLPFLTRME----GFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQWMKW 60
               L            ++Y T     +G++   +                S+G      
Sbjct: 69  AHSLLYYNFTSHFISRIQVYATLPVINLGRVSTIDSY-------------ASAGVIGPYD 115

Query: 61  EELELLPSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGI---LIIK 117
                                       +  ++     +  L++ +          L + 
Sbjct: 116 TNKL-----------------------DLEDIEISFDHIVPLKYSQLVDLRSRYDGLTLL 152

Query: 118 AFSSGLDIGACNWIISGAKGNIAYISGSNFASGHAMDFDYRAIQGSDLILYSDLSSLDST 177
           A+++G+  G   W IS     + Y    N             +  + ++        D+T
Sbjct: 153 AYNAGVCPGGSIWCISTYSEKLVYAKRWNHT-------RDNILNAASIL--------DAT 197

Query: 178 EDIDQSSFSDDNNNWEELMNSLSNYDESVEEMEKLAFICSCAIDSVKAGGSVLIPINRVG 237
                +           ++ +L  +  S    ++           + + GSV+IP++  G
Sbjct: 198 GKPLSTLMRPSA-----IITTLDRFGSSQPFKKRSKIFKDTLKKGLSSDGSVIIPVDMSG 252

Query: 238 VFLQLLEQIAIFMECSS-----LKIPIYIISSVAEELLAYTNTIPEWLCKQRQEKLFSGD 292
            FL L  Q+   +  S+      ++P+ I+S      L Y  ++ EWL     +   + +
Sbjct: 253 KFLDLFTQVHELLFESTKINAHTQVPVLILSYARGRTLTYAKSMLEWLSPSLLKTWENRN 312

Query: 293 ----PLFAHVKLIKEKKIHVFPAVHSPKLLMNWQEPCIVFSPHWSLRLGPTIHLLRRWSG 348
                       I            +P  L  +    I F             ++ +   
Sbjct: 313 NTSPFEIGSRIKI-----------IAPNELSKYPGSKICFVSEVG---ALINEVIIKVGN 358

Query: 349 DHNSLLVL 356
              + L+L
Sbjct: 359 SEKTTLIL 366
>2i7t_A Cleavage and polyadenylation specificity factor 73 kDa subunit; metallo-B-lactamase, PRE-mRNA processing, artemis, V(D)J recombination; 2.10A {Homo sapiens} SCOP: d.157.1.10 PDB: 2i7v_A Length = 459 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3af5_A Putative uncharacterized protein PH1404; archaeal CPSF, beta-CAsp family, KH domain, ribonuclease, ME beta-lactamase superfamily, archaea; 2.60A {Pyrococcus horikoshii} PDB: 3af6_A* Length = 651 Back     alignment and structure
>3iek_A Ribonuclease TTHA0252; metallo beta lactamase fold, endonuclease, hydrolase, metal- nuclease, RNA-binding, rRNA processing; HET: FLC; 2.05A {Thermus thermophilus} PDB: 2dkf_A* 3iel_A* 3iem_A* 2zdf_A* 3idz_A* 2zdd_A* 3ie0_A* 2zde_A* 3ie1_A* 2zdw_A* 3a4y_A* 2yvd_A* 3ie2_A* Length = 431 Back     alignment and structure
>2xr1_A Cleavage and polyadenylation specificity factor 1 subunit; hydrolase, metallo-beta-lactamase, beta-CAsp, RNA processing; 2.59A {Methanosarcina mazei} Length = 640 Back     alignment and structure
>2ycb_A Beta-CAsp RNAse, cleavage and polyadenylation specificity factor; hydrolase, KH, metallo-beta-lactamase; 3.10A {Methanothermobacter thermautotrophicusorganism_taxid} Length = 636 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query575
3iek_A431 Ribonuclease TTHA0252; metallo beta lactamase fold 100.0
2i7t_A459 Cleavage and polyadenylation specificity factor 73 100.0
3af5_A651 Putative uncharacterized protein PH1404; archaeal 100.0
2xr1_A640 Cleavage and polyadenylation specificity factor 1 100.0
2ycb_A636 Beta-CAsp RNAse, cleavage and polyadenylation spec 100.0
2i7x_A 717 Protein CFT2; polyadenylation, metallo-B-lactamase 100.0
3zq4_A555 Ribonuclease J 1, RNAse J1; hydrolase, RNA maturat 99.97
3bk2_A562 RNAse J, metal dependent hydrolase; endoribonuclea 99.96
2az4_A429 Hypothetical protein EF2904; structural genomics, 99.88
3zdk_A336 5' exonuclease apollo; hydrolase; HET: TLA; 2.16A 99.83
4b87_A367 DNA cross-LINK repair 1A protein; dclre1A, DCLRE, 99.82
1y44_A320 Ribonuclease Z; zinc-dependent metal hydrolase, hy 97.08
2e7y_A280 TRNAse Z; tRNA maturation, metallo-beta-lactaMSe, 97.05
2cbn_A306 Ribonuclease Z; phosphodiesterase beta lactamase t 96.73
2r2d_A276 AGR_PTI_140P, Zn-dependent hydrolases; lactonase, 96.63
3g1p_A258 Protein PHNP; C-P lyase, phosphodiesterase, phosph 96.41
1zkp_A268 Hypothetical protein BA1088; zinc binding protein, 96.38
3esh_A280 Protein similar to metal-dependent hydrolase; stru 96.17
3md7_A293 Beta-lactamase-like; ssgcid, hydrolase, structural 95.9
3kl7_A235 Putative metal-dependent hydrolase; structural gen 95.87
3jxp_A321 Coenzyme PQQ synthesis protein B; alpha-beta prote 95.81
2fhx_A246 SPM-1; metallo-beta-lactamase, dinuclear zinc, ant 95.04
3adr_A261 Putative uncharacterized protein ST1585; quorum se 93.7
3l6n_A219 Metallo-beta-lactamase; zinc, hydolase, antibiotic 93.28
2wyl_A360 L-ascorbate-6-phosphate lactonase ULAG; hydrolase; 91.08
1ztc_A221 Hypothetical protein TM0894; structural genomics, 90.73
1vjn_A220 Zn-dependent hydrolase of metallo-beta-lactamase s 89.94
3m8t_A294 'BLR6230 protein; subclass B3 beta-lactamase, zinc 89.52
4hl2_A243 Beta-lactamase NDM-1; structural genomics, PSI-bio 88.99
4ax1_B303 Metallo-beta-lactamase AIM-1; hydrolase, antibioti 88.74
2p18_A311 Glyoxalase II; metalloprotein, beta sandwich, alph 88.56
3zwf_A368 Zinc phosphodiesterase ELAC protein 1; beta-lactam 87.33
2zo4_A317 Metallo-beta-lactamase family protein; hydrolase; 86.8
1k07_A263 FEZ-1 beta-lactamase; monomer with alpha-beta/BETA 86.25
3bv6_A379 Metal-dependent hydrolase; metallo protein, beta-l 85.98
4dik_A410 Flavoprotein; TM0755, electron transport, DI-iron 85.46
2xf4_A210 Hydroxyacylglutathione hydrolase; HET: PG4; 2.30A 84.49
2q9u_A414 A-type flavoprotein; flavodoxin like, beta lactama 84.34
4efz_A298 Metallo-beta-lactamase family protein; structural 84.27
3iog_A227 Beta-lactamase; hydrolase, antibiotic resistance, 84.23
3aj3_A274 MLR6805 protein, 4-pyridoxolactonase; Zn-protein, 84.02
4ad9_A289 Lactb2, beta-lactamase-like protein 2; hydrolase, 83.76
3q6v_A233 Beta-lactamase; metalloenzyme, alpha-beta, hydrola 83.53
2gcu_A245 Putative hydroxyacylglutathione hydrolase 3; ethyl 83.16
1p9e_A331 Methyl parathion hydrolase; Zn containing; 2.40A { 82.22
3dha_A254 N-acyl homoserine lactone hydrolase; zinc bimetall 81.77
2vw8_A303 PA1000, PQSE; quinolone signal response protein, s 80.7
1qh5_A260 Glyoxalase II, protein (hydroxyacylglutathione hyd 80.64
3tp9_A474 Beta-lactamase and rhodanese domain protein; struc 80.61
>3iek_A Ribonuclease TTHA0252; metallo beta lactamase fold, endonuclease, hydrolase, metal- nuclease, RNA-binding, rRNA processing; HET: FLC; 2.05A {Thermus thermophilus} SCOP: d.157.1.10 PDB: 2dkf_A* 3iel_A* 3iem_A* 2zdf_A* 3idz_A* 2zdd_A* 3ie0_A* 2zde_A* 3ie1_A* 2zdw_A* 3a4y_A* 2yvd_A* 3ie2_A* Back     alignment and structure
Probab=100.00  E-value=5.4e-62  Score=526.06  Aligned_cols=347  Identities=19%  Similarity=0.199  Sum_probs=294.3

Q ss_pred             cccccchhccccCCcceEEeeHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCccchhhhHhhhchhhHhhhhccCCCCC
Q 008169            2 GMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQWMKWEELELLPSALRKIALGEDGSE   81 (575)
Q Consensus         2 ~~~aLP~l~~~~gf~g~IY~T~pT~~l~~llL~D~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~   81 (575)
                      |+++||+|.+ .||+++||||+||+++++.++.|+.++++                                        
T Consensus        64 H~gglp~l~~-~~~~~~Iy~t~~t~~l~~~~l~d~~~~~~----------------------------------------  102 (431)
T 3iek_A           64 HVGRLPKLFR-EGYRGPVYATRATVLLMEIVLEDALKVMD----------------------------------------  102 (431)
T ss_dssp             HHTTHHHHHH-TTCCSCEEECHHHHHHHHHHHHHHHHHCS----------------------------------------
T ss_pred             HhccHHHHHH-cCCCCeEEEcHHHHHHHHHHHHHHHhhcc----------------------------------------
Confidence            5799999998 68999999999999999999999876531                                        


Q ss_pred             CCCCCchH--HHHHHHHhcceEecCCCEEEeCCceEEEeecCCccccceEEEEEeCCeeEEEecCCCCCCCCCCCCCCCC
Q 008169           82 LGGGCPCI--AHVKDCISKVQTLRFGEEACYNGILIIKAFSSGLDIGACNWIISGAKGNIAYISGSNFASGHAMDFDYRA  159 (575)
Q Consensus        82 ~~~~~~ly--~dv~~~~~~i~~v~y~q~~~l~g~i~it~~~AGHiLGsa~~~I~~~~~~I~YtgD~s~~~~~~~~~d~~~  159 (575)
                          .++|  +|++.++.++++++|++++++ ++++++++++||++||++|.|+.++.+|+||||+...... ...++..
T Consensus       103 ----~~~y~~~~~~~~~~~~~~l~~~~~~~l-~g~~v~~~~agH~~Gs~~~~i~~~~~~ilfsGD~~~~~~~-~l~~~~~  176 (431)
T 3iek_A          103 ----EPFFGPEDVEEALGHLRPLEYGEWLRL-GALSLAFGQAGHLPGSAFVVAQGEGRTLVYSGDLGNREKD-VLPDPSL  176 (431)
T ss_dssp             ----SCSSCHHHHHHHHHTEEECCTTCCEEE-TTEEEEEEECCSSTTCEEEEEEETTEEEEECCCCCCTTSS-SSCCCCB
T ss_pred             ----cCCCCHHHHHHHHhccEEcCCCCeEEe-CCEEEEEEeCCCCcCceEEEEEECCEEEEEeCCCCCCCCc-ccCCccc
Confidence                1567  999999999999999999999 5799999999999999999999999999999998754221 1113345


Q ss_pred             CCCCcEEEEcCCCCCCCCccccCCcccCCCCchhhhhhccCCCCccHHHHHHHHHHHHHHHHHHhcCCeEEEecCChhHH
Q 008169          160 IQGSDLILYSDLSSLDSTEDIDQSSFSDDNNNWEELMNSLSNYDESVEEMEKLAFICSCAIDSVKAGGSVLIPINRVGVF  239 (575)
Q Consensus       160 l~~~DvLI~e~~st~~~~~~~~~~~li~~~~~~e~~~~y~~~~~~~~~~~e~l~~l~~~I~~tl~~GG~VLIP~fa~GR~  239 (575)
                      +.++|+||+|  +||+                        .+.++++  .++.++|++.|.+++++||+||||+|++||+
T Consensus       177 ~~~~D~LI~E--sTy~------------------------~~~h~~~--~~~~~~l~~~i~~~~~~gg~vlIp~fa~gR~  228 (431)
T 3iek_A          177 PPLADLVLAE--GTYG------------------------DRPHRPY--RETVREFLEILEKTLSQGGKVLIPTFAVERA  228 (431)
T ss_dssp             CCCCSEEEEE--CTTT------------------------TCCCCCH--HHHHHHHHHHHHHHHHTTCEEEEECCTTTHH
T ss_pred             cCCccEEEEE--cccC------------------------CcCCCCh--HHHHHHHHHHHHHHHHcCCeEEEEeccchHH
Confidence            6789999999  5664                        1112222  2344679999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhCCCc-ccEEEECchHHHHHHHHHHhHHhhhHHHHHhhccCCCCCcchhhhhcccccccCCCCChhhh
Q 008169          240 LQLLEQIAIFMECSSLK-IPIYIISSVAEELLAYTNTIPEWLCKQRQEKLFSGDPLFAHVKLIKEKKIHVFPAVHSPKLL  318 (575)
Q Consensus       240 qELl~~L~~~~~~~~l~-vpIy~~s~~a~~~~~~~~~~~ewl~~~~~~~~~~~e~pF~~~~l~~~~~l~~~~~i~~~~~~  318 (575)
                      |||+++|+++|++  ++ +|||++||||.+++++|+.|.|||+++.++....+++||.+..+      +.+++......+
T Consensus       229 qell~~l~~~~~~--~~~~pi~~~s~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~pf~~~~~------~~~~~~~~~~~~  300 (431)
T 3iek_A          229 QEILYVLYTHGHR--LPRAPIYLDSPMAGRVLSLYPRLVRYFSEEVQAHFLQGKNPFRPAGL------EVVEHTEASKAL  300 (431)
T ss_dssp             HHHHHHHHHHGGG--SCCCCEEEECHHHHHHHHHGGGGGGGSCHHHHHHHHTTSCTTCCTTE------EECCSHHHHHHH
T ss_pred             HHHHHHHHHHHHh--ccCCCEEEeChHHHHHHHHHHHhHHHHHHHHHHHHhcCCCCCCCCCe------EEeCCHHHHHHH
Confidence            9999999999988  65 99999999999999999999999999998877778899966432      334433322345


Q ss_pred             hccCCCEEEEecCCCCCcchHHHHHHHHhCCCCCcEEecCccchhhc-------------cCCCceeeeEEEEe-ecccC
Q 008169          319 MNWQEPCIVFSPHWSLRLGPTIHLLRRWSGDHNSLLVLENEVDAELA-------------VLPFKPISMKVLQC-SFLSG  384 (575)
Q Consensus       319 ~~~~~P~VV~as~gml~~G~s~~~l~~~~~d~~N~Iil~g~~~~~~~-------------l~~~~~v~~~v~~~-~fsaH  384 (575)
                      +..++||||||+||||++|++++||++|++||+|+||||||+.+++.             .+...+|+|+|+++ +||||
T Consensus       301 ~~~~~p~viia~~gm~~~G~~~~~l~~~~~~~~n~ii~~gyq~~gt~g~~l~~~~~~v~~~g~~~~v~a~v~~~~~~saH  380 (431)
T 3iek_A          301 NRAPGPMVVLAGSGMLAGGRILHHLKHGLSDPRNALVFVGYQPQGGLGAEIIARPPAVRILGEEVPLRASVHTLGGFSGH  380 (431)
T ss_dssp             HHSCSSEEEEESCTTSSSSHHHHHHHHHTTCTTCEEEECSCCCTTSHHHHHHTCCSEEEETTEEEECCSEEEECGGGCSS
T ss_pred             hcCCCCeEEEecCCCCCCChHHHHHHHhcCCCCCeEEEECCCCCCChHHHhhcCCcEEEECCEEEEEEEEEEEECCcccc
Confidence            66799999999999999999999999999999999999999887531             24457899999999 69999


Q ss_pred             CChhhHHHHHhhcCCCEEEEecCCcccccccc----cCCceeeecCCCcEEEe
Q 008169          385 KKLQKVQPLLKILQPKLVLFPEEWRTHVSFSD----VTSFSVSHYSENETIHI  433 (575)
Q Consensus       385 aD~~~l~~~i~~~~P~~vilvHGe~~~~~~l~----~~~~~v~~p~~~e~i~l  433 (575)
                      ||+++|++|++.++  +|+|||||++++..|+    +.+.++++|++||++++
T Consensus       381 ad~~~l~~~~~~~~--~v~lvHge~~~~~~l~~~l~~~~~~~~~p~~~~~~~~  431 (431)
T 3iek_A          381 AGQDELLDWLQGEP--RVVLVHGEEEKLLALGKLLALRGQEVSLARFGEGVPV  431 (431)
T ss_dssp             CCHHHHHHHHTTCS--EEEEESSCHHHHHHHHHHHHHTTCEEEECCTTCCEEC
T ss_pred             CCHHHHHHHHHhCC--eEEEECCCHHHHHHHHHHHHHhCCcEEECCCCCEEeC
Confidence            99999999999875  8999999999999997    34559999999999875
>2i7t_A Cleavage and polyadenylation specificity factor 73 kDa subunit; metallo-B-lactamase, PRE-mRNA processing, artemis, V(D)J recombination; 2.10A {Homo sapiens} SCOP: d.157.1.10 PDB: 2i7v_A Back     alignment and structure
>3af5_A Putative uncharacterized protein PH1404; archaeal CPSF, beta-CAsp family, KH domain, ribonuclease, ME beta-lactamase superfamily, archaea; 2.60A {Pyrococcus horikoshii} PDB: 3af6_A* Back     alignment and structure
>2xr1_A Cleavage and polyadenylation specificity factor 1 subunit; hydrolase, metallo-beta-lactamase, beta-CAsp, RNA processing; 2.59A {Methanosarcina mazei} Back     alignment and structure
>2ycb_A Beta-CAsp RNAse, cleavage and polyadenylation specificity factor; hydrolase, KH, metallo-beta-lactamase; 3.10A {Methanothermobacter thermautotrophicusorganism_taxid} Back     alignment and structure
>2i7x_A Protein CFT2; polyadenylation, metallo-B-lactamase, PRE-mRNA processing, artemis, V(D)J recombination, double-strand break repair; 2.50A {Saccharomyces cerevisiae} SCOP: d.157.1.10 Back     alignment and structure
>3zq4_A Ribonuclease J 1, RNAse J1; hydrolase, RNA maturation; 3.00A {Bacillus subtilis} Back     alignment and structure
>3bk2_A RNAse J, metal dependent hydrolase; endoribonuclease, exoribonuclease, metallo-beta-lactamase; HET: U5P; 2.10A {Thermus thermophilus} PDB: 3bk1_A* 3t3o_A* 3t3n_A* Back     alignment and structure
>2az4_A Hypothetical protein EF2904; structural genomics, PSI, protein STR initiative, midwest center for structural genomics, MCSG, U function; 2.00A {Enterococcus faecalis} SCOP: d.157.1.10 Back     alignment and structure
>3zdk_A 5' exonuclease apollo; hydrolase; HET: TLA; 2.16A {Homo sapiens} Back     alignment and structure
>4b87_A DNA cross-LINK repair 1A protein; dclre1A, DCLRE, interstrand crosslink repair, hydrolase, NIT mustard, cancer, chemotherapy, PSO2 homolog,; HET: DNA; 2.16A {Homo sapiens} Back     alignment and structure
>1y44_A Ribonuclease Z; zinc-dependent metal hydrolase, hydrolase; HET: MES; 2.10A {Bacillus subtilis} SCOP: d.157.1.7 PDB: 2fk6_A* Back     alignment and structure
>2e7y_A TRNAse Z; tRNA maturation, metallo-beta-lactaMSe, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.97A {Thermotoga maritima} SCOP: d.157.1.7 PDB: 1ww1_A Back     alignment and structure
>2cbn_A Ribonuclease Z; phosphodiesterase beta lactamase tRNAse Z, hydrolase, metal- binding, endonuclease, tRNA processing, zinc; 2.9A {Escherichia coli} SCOP: d.157.1.7 Back     alignment and structure
>2r2d_A AGR_PTI_140P, Zn-dependent hydrolases; lactonase, N-acyl hompserine lactone, DI-nuclear zinc center quenching, AIIB, phosphate; HET: PO4; 1.75A {Agrobacterium tumefaciens} Back     alignment and structure
>3g1p_A Protein PHNP; C-P lyase, phosphodiesterase, phosphonate utilization, alkylphosphonate uptake; 1.40A {Escherichia coli} PDB: 3p2u_A Back     alignment and structure
>1zkp_A Hypothetical protein BA1088; zinc binding protein, structural genomics, PSI, protein STRU initiative; 1.50A {Bacillus anthracis str} SCOP: d.157.1.9 Back     alignment and structure
>3esh_A Protein similar to metal-dependent hydrolase; structural genomics, PSI-2, protein structure initiative; 2.50A {Staphylococcus aureus subsp} Back     alignment and structure
>3md7_A Beta-lactamase-like; ssgcid, hydrolase, structural genomics, structural genomics center for infectious disease; HET: 5GP TLA; 1.27A {Brucella melitensis biovar abortus} PDB: 3qh8_A* 3py6_A* 3py5_A* Back     alignment and structure
>3kl7_A Putative metal-dependent hydrolase; structural genomics, JOI for structural genomics, JCSG; 2.30A {Parabacteroides distasonis atcc 8503} Back     alignment and structure
>3jxp_A Coenzyme PQQ synthesis protein B; alpha-beta protein, PQQ biosynthesis, transport, biosyntheti; 2.20A {Pseudomonas putida} SCOP: d.157.1.6 PDB: 1xto_A Back     alignment and structure
>2fhx_A SPM-1; metallo-beta-lactamase, dinuclear zinc, antibiotic resistanc hydrolase, metal binding protein; 1.90A {Pseudomonas aeruginosa} Back     alignment and structure
>3adr_A Putative uncharacterized protein ST1585; quorum sensing, quinolone signal, metallo-beta-lactamase FOL conserved hypothetical protein; HET: EPE; 1.80A {Sulfolobus tokodaii} Back     alignment and structure
>3l6n_A Metallo-beta-lactamase; zinc, hydolase, antibiotics resistance, hydrolase; 1.65A {Chryseobacterium indologenes} SCOP: d.157.1.0 Back     alignment and structure
>2wyl_A L-ascorbate-6-phosphate lactonase ULAG; hydrolase; 2.59A {Escherichia coli} PDB: 2wym_A* Back     alignment and structure
>1ztc_A Hypothetical protein TM0894; structural genomics, joint center for structural genomics, J protein structure initiative, PSI, hydrolase; HET: MSE; 2.10A {Thermotoga maritima} SCOP: d.157.1.11 Back     alignment and structure
>1vjn_A Zn-dependent hydrolase of metallo-beta-lactamase superfamily TM0207; metallo-hydrolase/oxidoreductase fold, structural genomics; 2.00A {Thermotoga maritima} SCOP: d.157.1.4 Back     alignment and structure
>3m8t_A 'BLR6230 protein; subclass B3 beta-lactamase, zinc enzyme, sulfonamide complex hydrolase-hydrolase inhibitor complex; HET: 4NZ; 1.33A {Bradyrhizobium japonicum} PDB: 3lvz_A* 2gmn_A Back     alignment and structure
>4hl2_A Beta-lactamase NDM-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ZZ7; 1.05A {Klebsiella pneumoniae} PDB: 4hl1_A* 4h0d_A* 4gyu_A* 4gyq_A 3q6x_A* 3spu_A 3rkj_A 3sfp_A* 3rkk_A* 3sbl_A* 3srx_A 3zr9_A 3s0z_A 3pg4_A Back     alignment and structure
>4ax1_B Metallo-beta-lactamase AIM-1; hydrolase, antibiotic resistance, acquired B3, drug binding; 1.40A {Pseudomonas aeruginosa} PDB: 4awy_B 4awz_A 4ax0_B Back     alignment and structure
>2p18_A Glyoxalase II; metalloprotein, beta sandwich, alpha-helical domain, hydrola; HET: SPD; 1.80A {Leishmania infantum} PDB: 2p1e_A* Back     alignment and structure
>3zwf_A Zinc phosphodiesterase ELAC protein 1; beta-lactamase, hydrolase, metal-binding, tRNA processing, zinc-binding, catabolism; 1.70A {Homo sapiens} Back     alignment and structure
>2zo4_A Metallo-beta-lactamase family protein; hydrolase; 2.10A {Thermus thermophilus} Back     alignment and structure
>1k07_A FEZ-1 beta-lactamase; monomer with alpha-beta/BETA-alpha fold. two monomers PER AS UNIT., hydrolase; HET: GOL; 1.65A {Fluoribacter gormanii} SCOP: d.157.1.1 PDB: 1jt1_A* 1l9y_A Back     alignment and structure
>3bv6_A Metal-dependent hydrolase; metallo protein, beta-lactamase like fold, MCSG, structural PSI-2, protein structure initiative; 1.80A {Vibrio cholerae o1 biovar eltor} Back     alignment and structure
>4dik_A Flavoprotein; TM0755, electron transport, DI-iron protein; 1.75A {Thermotoga maritima} PDB: 4dil_A 1vme_A* Back     alignment and structure
>2xf4_A Hydroxyacylglutathione hydrolase; HET: PG4; 2.30A {Salmonella enterica} Back     alignment and structure
>2q9u_A A-type flavoprotein; flavodoxin like, beta lactamase like, oxidoreductase; HET: FMN; 1.90A {Giardia intestinalis} Back     alignment and structure
>4efz_A Metallo-beta-lactamase family protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.60A {Burkholderia pseudomallei} Back     alignment and structure
>3iog_A Beta-lactamase; hydrolase, antibiotic resistance, metal-binding; HET: SDF; 1.41A {Aeromonas hydrophila} SCOP: d.157.1.1 PDB: 1x8i_A 3fai_A* 3iof_A* 1x8h_A 2qds_A* 2gkl_A* 1x8g_A* 3f9o_A 3t9m_A 3sw3_A Back     alignment and structure
>3aj3_A MLR6805 protein, 4-pyridoxolactonase; Zn-protein, metallo-beta-lactamase, hydrolase; 1.58A {Mesorhizobium loti} PDB: 3aj0_A Back     alignment and structure
>4ad9_A Lactb2, beta-lactamase-like protein 2; hydrolase, metallo-beta lactamase, mitochondria; 2.60A {Homo sapiens} Back     alignment and structure
>3q6v_A Beta-lactamase; metalloenzyme, alpha-beta, hydrolase; 1.37A {Serratia fonticola} PDB: 3sd9_A Back     alignment and structure
>2gcu_A Putative hydroxyacylglutathione hydrolase 3; ethylmalonic encephalopathy, ETHE1, structural genomics, protein structure initiative; 1.48A {Arabidopsis thaliana} Back     alignment and structure
>1p9e_A Methyl parathion hydrolase; Zn containing; 2.40A {Pseudomonas SP} SCOP: d.157.1.5 Back     alignment and structure
>3dha_A N-acyl homoserine lactone hydrolase; zinc bimetallohydrolase, quorum quenching; HET: C6L GOL; 0.95A {Bacillus thuringiensis serovar kurstakorganism_taxid} PDB: 3dhb_A* 3dhc_A* 2a7m_A* 2br6_A 2btn_A Back     alignment and structure
>2vw8_A PA1000, PQSE; quinolone signal response protein, signaling protein, SSPF; 1.45A {Pseudomonas aeruginosa PAO1} PDB: 2q0j_A 2q0i_A 3dh8_A* Back     alignment and structure
>1qh5_A Glyoxalase II, protein (hydroxyacylglutathione hydrolase); metallo-hydrolase; HET: GSH GBP; 1.45A {Homo sapiens} SCOP: d.157.1.2 PDB: 1qh3_A* Back     alignment and structure
>3tp9_A Beta-lactamase and rhodanese domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.70A {Alicyclobacillus acidocaldarius subsp} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 575
d2i7xa1514 d.157.1.10 (A:1-422,A:626-717) Cleavage factor two 2e-21
d2i7ta1451 d.157.1.10 (A:9-459) Cleavage and polyadenylation 1e-04
>d2i7xa1 d.157.1.10 (A:1-422,A:626-717) Cleavage factor two protein 2, CFT2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 514 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Metallo-hydrolase/oxidoreductase
superfamily: Metallo-hydrolase/oxidoreductase
family: beta-CASP RNA-metabolising hydrolases
domain: Cleavage factor two protein 2, CFT2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 95.3 bits (236), Expect = 2e-21
 Identities = 41/364 (11%), Positives = 100/364 (27%), Gaps = 78/364 (21%)

Query: 5   GLPFLTRME----GFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQWMKW 60
               L            ++Y T     +G++   +          +   +          
Sbjct: 69  AHSLLYYNFTSHFISRIQVYATLPVINLGRVSTIDSYASAGVIGPYDTNKLD-------- 120

Query: 61  EELELLPSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGI---LIIK 117
                                       +  ++     +  L++ +          L + 
Sbjct: 121 ----------------------------LEDIEISFDHIVPLKYSQLVDLRSRYDGLTLL 152

Query: 118 AFSSGLDIGACNWIISGAKGNIAYISGSNFASGHAMDFDYRAIQGSDLILYSDLSSLDST 177
           A+++G+  G   W IS     + Y       +          +  + ++  +        
Sbjct: 153 AYNAGVCPGGSIWCISTYSEKLVY-------AKRWNHTRDNILNAASILDATGKPLSTLM 205

Query: 178 EDIDQSSFSDDNNNWEELMNSLSNYDESVEEMEKLAFICSCAIDSVKAGGSVLIPINRVG 237
                            ++ +L  +  S    ++           + + GSV+IP++  G
Sbjct: 206 RPSA-------------IITTLDRFGSSQPFKKRSKIFKDTLKKGLSSDGSVIIPVDMSG 252

Query: 238 VFLQLLEQIAIFMECSSL-----KIPIYIISSVAEELLAYTNTIPEWLCKQRQEKLFSGD 292
            FL L  Q+   +  S+      ++P+ I+S      L Y  ++ EWL     +   + +
Sbjct: 253 KFLDLFTQVHELLFESTKINAHTQVPVLILSYARGRTLTYAKSMLEWLSPSLLKTWENRN 312

Query: 293 PLFAHVKLIKEKKIHVFPAVHSPKLLMNWQEPCIVFSPHWSLRLGPTIHLLRRWSGDHNS 352
                       +I     + +P  L  +    I F             ++ +      +
Sbjct: 313 NTSPF-------EIGSRIKIIAPNELSKYPGSKICFVSEVG---ALINEVIIKVGNSEKT 362

Query: 353 LLVL 356
            L+L
Sbjct: 363 TLIL 366
>d2i7ta1 d.157.1.10 (A:9-459) Cleavage and polyadenylation specificity factor subunit 3 {Human (Homo sapiens) [TaxId: 9606]} Length = 451 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query575
d2i7xa1514 Cleavage factor two protein 2, CFT2 {Baker's yeast 100.0
d2dkfa1431 Putative RNA-degradation protein TTHA0252 {Thermus 100.0
d2i7ta1451 Cleavage and polyadenylation specificity factor su 100.0
d2az4a1183 Hypothetical protein EF2904 {Enterococcus faecalis 98.84
d1zkpa1244 Hypothetical protein BA1088 (BAS1016) {Bacillus an 95.84
d1p9ea_294 Methyl parathion hydrolase {Pseudomonas sp. WBC-3 94.41
d1k07a_262 Zn metallo-beta-lactamase {Fluoribacter gormanii, 93.48
d2q0ia1298 Quinolone signal response protein PqsE {Pseudomona 91.4
d1x8ha_228 Zn metallo-beta-lactamase {Aeromonas hydrophila, C 83.06
>d2i7xa1 d.157.1.10 (A:1-422,A:626-717) Cleavage factor two protein 2, CFT2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Metallo-hydrolase/oxidoreductase
superfamily: Metallo-hydrolase/oxidoreductase
family: beta-CASP RNA-metabolising hydrolases
domain: Cleavage factor two protein 2, CFT2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.2e-59  Score=515.75  Aligned_cols=355  Identities=13%  Similarity=0.146  Sum_probs=285.9

Q ss_pred             cccccchhccc----cCCcceEEeeHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCccchhhhHhhhchhhHhhhhccC
Q 008169            2 GMLGLPFLTRM----EGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQWMKWEELELLPSALRKIALGE   77 (575)
Q Consensus         2 ~~~aLP~l~~~----~gf~g~IY~T~pT~~l~~llL~D~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~   77 (575)
                      |+||||||+++    .||++|||||+||++|++++|.|+++.++...                                 
T Consensus        66 HiGalP~L~~~~~~~~~~~~pIy~T~~T~~l~~~~l~d~~~~~~~~~---------------------------------  112 (514)
T d2i7xa1          66 CLGAHSLLYYNFTSHFISRIQVYATLPVINLGRVSTIDSYASAGVIG---------------------------------  112 (514)
T ss_dssp             HHTTHHHHHHHSHHHHHHTCEEEEEHHHHHHHHHHHHHHHHHTTSSS---------------------------------
T ss_pred             HHCchHHHHHhcccccCCCcCEEeCHHHHHHHHHHHHHHHHHhhhhc---------------------------------
Confidence            68999999864    36899999999999999999999997653200                                 


Q ss_pred             CCCCCCCCCchH--HHHHHHHhcceEecCCCEEEeCC---ceEEEeecCCccccceEEEEEeCCeeEEEecCCCCC-CCC
Q 008169           78 DGSELGGGCPCI--AHVKDCISKVQTLRFGEEACYNG---ILIIKAFSSGLDIGACNWIISGAKGNIAYISGSNFA-SGH  151 (575)
Q Consensus        78 ~~~~~~~~~~ly--~dv~~~~~~i~~v~y~q~~~l~g---~i~it~~~AGHiLGsa~~~I~~~~~~I~YtgD~s~~-~~~  151 (575)
                       ..+    .++|  +||+++++++.+++|+|++++.+   ++++++++|||+||||+|.|+.++.+|+||||++.. +++
T Consensus       113 -~~~----~~~~~~~dv~~~~~~~~~~~y~e~~~i~~~~~~~~~~~~~aGHilGsa~~~I~~~~~~IvytGD~~~~~~~~  187 (514)
T d2i7xa1         113 -PYD----TNKLDLEDIEISFDHIVPLKYSQLVDLRSRYDGLTLLAYNAGVCPGGSIWCISTYSEKLVYAKRWNHTRDNI  187 (514)
T ss_dssp             -SBT----TCCSCHHHHHHHHHTSEEECTTCCEEETTTTTTEEEEEEECSSSTTCEEEEEECSSCEEEECSSCCSSCCSS
T ss_pred             -ccc----cCCCCHHHHHHHHHhcccCCCCCeEEecCCcccEEEEEccCCCCCCceEEEEEECCeEEEEEeccCCCCCcc
Confidence             011    3678  99999999999999999999964   699999999999999999999999999999999875 455


Q ss_pred             CCCCCCC-------CCCCCcEEEEcCCCCCCCCccccCCcccCCCCchhhhhhccCCCCccHHHHHHHHHHHHHHHHHHh
Q 008169          152 AMDFDYR-------AIQGSDLILYSDLSSLDSTEDIDQSSFSDDNNNWEELMNSLSNYDESVEEMEKLAFICSCAIDSVK  224 (575)
Q Consensus       152 ~~~~d~~-------~l~~~DvLI~e~~st~~~~~~~~~~~li~~~~~~e~~~~y~~~~~~~~~~~e~l~~l~~~I~~tl~  224 (575)
                      ....+..       .....|.++++  +|++                        ...+.++.  ++.++|++.|.++++
T Consensus       188 l~~~~~~~~~~~~~~~~~~~~lli~--~t~~------------------------~~~~~~~~--~~~~~l~~~i~~~~~  239 (514)
T d2i7xa1         188 LNAASILDATGKPLSTLMRPSAIIT--TLDR------------------------FGSSQPFK--KRSKIFKDTLKKGLS  239 (514)
T ss_dssp             CCCCTTBCTTSCBCSTTSSCSEEEE--CCSC------------------------CCCSSCHH--HHHHHHHHHHHHHTS
T ss_pred             CCCccccccccccccccCCCEEEEE--cCCC------------------------CCCCCChH--HHHHHHHHHHHHHHh
Confidence            4443321       11234555565  2432                        11112222  344679999999999


Q ss_pred             cCCeEEEecCChhHHHHHHHHHHHHHHhCC----Cc-ccEEEECchHHHHHHHHHHhHHhhhHHHHHhhc--cCCCCCcc
Q 008169          225 AGGSVLIPINRVGVFLQLLEQIAIFMECSS----LK-IPIYIISSVAEELLAYTNTIPEWLCKQRQEKLF--SGDPLFAH  297 (575)
Q Consensus       225 ~GG~VLIP~fa~GR~qELl~~L~~~~~~~~----l~-vpIy~~s~~a~~~~~~~~~~~ewl~~~~~~~~~--~~e~pF~~  297 (575)
                      +||+||||+||+||+|||+++|+++|++..    +. +|||++|+||.+++++|+++.|||+++.++...  .+.+||.+
T Consensus       240 ~gG~VlIP~fa~gR~QEil~~l~~~~~~~~~~~~~~~~pI~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~pf~~  319 (514)
T d2i7xa1         240 SDGSVIIPVDMSGKFLDLFTQVHELLFESTKINAHTQVPVLILSYARGRTLTYAKSMLEWLSPSLLKTWENRNNTSPFEI  319 (514)
T ss_dssp             TTCEEEEEECTTTHHHHHHHHHHHHHTTC-------CCCEEEECTTTTHHHHHHHTCGGGSCHHHHHHHHSSSSCCTTCC
T ss_pred             CCCEEEEEEcCchHHHHHHHHHHHHHHHHHhhccCCCceEEEEChHHHHHHHHHHHhHhhcCHHHHHHHhhhcCCCchhc
Confidence            999999999999999999999999998652    33 899999999999999999999999998876543  45678765


Q ss_pred             hhhhhcccccccCCCCChhhhhccCCCEEEEecCCCCCcchHHHHHHHHhCCCCCcEEec--Cccchhhcc---------
Q 008169          298 VKLIKEKKIHVFPAVHSPKLLMNWQEPCIVFSPHWSLRLGPTIHLLRRWSGDHNSLLVLE--NEVDAELAV---------  366 (575)
Q Consensus       298 ~~l~~~~~l~~~~~i~~~~~~~~~~~P~VV~as~gml~~G~s~~~l~~~~~d~~N~Iil~--g~~~~~~~l---------  366 (575)
                      ..+      .   .+.+.+.+...++|||||||+||   |+++++|++|++||+|+||||  ||+.++...         
T Consensus       320 ~~~------~---~i~~~~~l~~~~~p~VIiat~~~---G~~~~~l~~~a~d~~n~Vi~t~~g~~~~~t~~~~~~~~~~~  387 (514)
T d2i7xa1         320 GSR------I---KIIAPNELSKYPGSKICFVSEVG---ALINEVIIKVGNSEKTTLILTKPSFECASSLDKILEIVEQD  387 (514)
T ss_dssp             TTT------E---EECCGGGGGGCCSCEEEEEESCH---HHHHHHHHHHSSCTTEEEEECSSCCTTCHHHHHHHHHHHTC
T ss_pred             cCc------e---eccCHHHHHhccCCcEEEEcCCC---chHHHHHHHHhcCCCCEEEEecCCCcccccHHHHHhhhhhh
Confidence            432      1   12334567778999999999987   999999999999999999998  665442100         


Q ss_pred             -------------------------------------------------------CCCceeeeEEEEeecccCCChhhHH
Q 008169          367 -------------------------------------------------------LPFKPISMKVLQCSFLSGKKLQKVQ  391 (575)
Q Consensus       367 -------------------------------------------------------~~~~~v~~~v~~~~fsaHaD~~~l~  391 (575)
                                                                             ....+++|+|..+.||+|||+++|.
T Consensus       388 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~v~~i~~SgHad~~el~  467 (514)
T d2i7xa1         388 ERNWKTFPEDGKSFLCDNYISIDTIKEEPLSKEETNFDNLDYLKIDKTLSKRTISTVNVQLKCSVVILNLQSLVDQRSAS  467 (514)
T ss_dssp             C--------CCCCEECCEEEEEEEEEEEESCSCCCCCSCCGGGSCSSCCEEEEEEEEEEEECSEEEECCCCCSCCHHHHH
T ss_pred             ccccccccccccccccCcceeecccccccccccccCcccccccccccccceeecccceEEEEEEEEEEEeeecCCHHHHH
Confidence                                                                   0013789999999999999999999


Q ss_pred             HHHhhcCCCEEEEecCCcccccccc----cCCceeeecCCCcEEEeC
Q 008169          392 PLLKILQPKLVLFPEEWRTHVSFSD----VTSFSVSHYSENETIHIP  434 (575)
Q Consensus       392 ~~i~~~~P~~vilvHGe~~~~~~l~----~~~~~v~~p~~~e~i~l~  434 (575)
                      +|++.++|++||+|||++.++++++    +.|++|++|++||+|+++
T Consensus       468 ~~~~~~~P~~vvlvHGe~~~~~~~a~~l~~~g~~v~~p~~g~~ie~~  514 (514)
T d2i7xa1         468 IIWPSLKSRKIVLSAPKQIQNEEITAKLIKKNIEVVNMPLNKIVEFS  514 (514)
T ss_dssp             HHGGGSCCSEEEECSCGGGSCHHHHHHHHHTTCEEEECCSSCCEEEC
T ss_pred             HHHHhhCCCEEEEeCCCHHHHHHHHHHHHHCCCeEEecCCCCEEeeC
Confidence            9999999999999999999998887    479999999999999874
>d2dkfa1 d.157.1.10 (A:1-431) Putative RNA-degradation protein TTHA0252 {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d2i7ta1 d.157.1.10 (A:9-459) Cleavage and polyadenylation specificity factor subunit 3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2az4a1 d.157.1.10 (A:56-238) Hypothetical protein EF2904 {Enterococcus faecalis [TaxId: 1351]} Back     information, alignment and structure
>d1zkpa1 d.157.1.9 (A:1-244) Hypothetical protein BA1088 (BAS1016) {Bacillus anthracis [TaxId: 1392]} Back     information, alignment and structure
>d1p9ea_ d.157.1.5 (A:) Methyl parathion hydrolase {Pseudomonas sp. WBC-3 [TaxId: 165468]} Back     information, alignment and structure
>d1k07a_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Fluoribacter gormanii, (Legionella gormanii) FEZ-1 [TaxId: 464]} Back     information, alignment and structure
>d2q0ia1 d.157.1.14 (A:1-298) Quinolone signal response protein PqsE {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1x8ha_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Aeromonas hydrophila, CphA [TaxId: 644]} Back     information, alignment and structure