Citrus Sinensis ID: 008174
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 575 | 2.2.26 [Sep-21-2011] | |||||||
| Q9UNN5 | 650 | FAS-associated factor 1 O | yes | no | 0.246 | 0.218 | 0.376 | 2e-12 | |
| P54731 | 649 | FAS-associated factor 1 O | yes | no | 0.246 | 0.218 | 0.364 | 5e-12 | |
| Q6GQ69 | 445 | FAS-associated factor 2-B | N/A | no | 0.246 | 0.319 | 0.329 | 6e-11 | |
| Q6AZH6 | 445 | FAS-associated factor 2-A | N/A | no | 0.259 | 0.334 | 0.325 | 7e-10 | |
| Q924K2 | 649 | FAS-associated factor 1 O | yes | no | 0.250 | 0.221 | 0.348 | 1e-09 | |
| Q28BP9 | 445 | FAS-associated factor 2 O | yes | no | 0.259 | 0.334 | 0.325 | 4e-09 | |
| O74498 | 427 | UBX domain-containing pro | yes | no | 0.161 | 0.217 | 0.4 | 1e-08 | |
| Q9QZ49 | 277 | UBX domain-containing pro | no | no | 0.149 | 0.310 | 0.382 | 5e-06 | |
| O00124 | 270 | UBX domain-containing pro | no | no | 0.133 | 0.285 | 0.379 | 3e-05 | |
| Q96CS3 | 445 | FAS-associated factor 2 O | no | no | 0.255 | 0.330 | 0.339 | 0.0003 |
| >sp|Q9UNN5|FAF1_HUMAN FAS-associated factor 1 OS=Homo sapiens GN=FAF1 PE=1 SV=2 | Back alignment and function desciption |
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Score = 75.1 bits (183), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 61/162 (37%), Positives = 88/162 (54%), Gaps = 20/162 (12%)
Query: 416 EAQRLIREQQDDEYLASLQADREKAEAR-RLMEEEARNAALAEERRKEEETRRKMEEQQE 474
EA+ ++ +QD+ Y SL+ADR K EA R M E+ R E+ R++ EE++E
Sbjct: 502 EARENVKREQDEAYRLSLEADRAKREAHEREMAEQFR----------LEQIRKEQEEERE 551
Query: 475 YERQLAAKEASLPQEPAPDDENA---VTLLVRMPDGSRRGRRFLKSNKLQSLFDYIDVGR 531
R + E +LP P P +ENA L +R P G RRFL SNKLQ +FD++ +
Sbjct: 552 AIR--LSLEQALP--PEPKEENAEPVSKLRIRTPSGEFLERRFLASNKLQIVFDFV-ASK 606
Query: 532 GIKAGTYRLVRPYPRRAFSDGESALTLNELGLTSKQEALFLE 573
G Y+L+ +PRR + + +L E+ L QE LFLE
Sbjct: 607 GFPWDEYKLLSTFPRRDVTQLDPNKSLLEVKLFP-QETLFLE 647
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Potentiates but cannot initiate FAS-induced apoptosis. Homo sapiens (taxid: 9606) |
| >sp|P54731|FAF1_MOUSE FAS-associated factor 1 OS=Mus musculus GN=Faf1 PE=1 SV=2 | Back alignment and function description |
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| >sp|Q6GQ69|FAF2B_XENLA FAS-associated factor 2-B OS=Xenopus laevis GN=faf2-b PE=2 SV=1 | Back alignment and function description |
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| >sp|Q6AZH6|FAF2A_XENLA FAS-associated factor 2-A OS=Xenopus laevis GN=faf2-a PE=2 SV=1 | Back alignment and function description |
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| >sp|Q924K2|FAF1_RAT FAS-associated factor 1 OS=Rattus norvegicus GN=Faf1 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q28BP9|FAF2_XENTR FAS-associated factor 2 OS=Xenopus tropicalis GN=faf2 PE=2 SV=1 | Back alignment and function description |
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| >sp|O74498|UCP10_SCHPO UBX domain-containing protein 10 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ucp10 PE=3 SV=1 | Back alignment and function description |
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| >sp|Q9QZ49|UBXN8_MOUSE UBX domain-containing protein 8 OS=Mus musculus GN=Ubxn8 PE=1 SV=1 | Back alignment and function description |
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| >sp|O00124|UBXN8_HUMAN UBX domain-containing protein 8 OS=Homo sapiens GN=UBXN8 PE=1 SV=2 | Back alignment and function description |
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| >sp|Q96CS3|FAF2_HUMAN FAS-associated factor 2 OS=Homo sapiens GN=FAF2 PE=1 SV=2 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 575 | ||||||
| 255537297 | 564 | ara4-interacting protein, putative [Rici | 0.940 | 0.959 | 0.655 | 0.0 | |
| 356514058 | 598 | PREDICTED: uncharacterized protein LOC10 | 0.979 | 0.941 | 0.616 | 0.0 | |
| 224071726 | 589 | predicted protein [Populus trichocarpa] | 0.989 | 0.966 | 0.663 | 0.0 | |
| 225426846 | 624 | PREDICTED: uncharacterized protein LOC10 | 0.986 | 0.908 | 0.613 | 0.0 | |
| 297742567 | 738 | unnamed protein product [Vitis vinifera] | 0.986 | 0.768 | 0.613 | 0.0 | |
| 356563214 | 597 | PREDICTED: uncharacterized protein LOC10 | 0.975 | 0.939 | 0.602 | 1e-180 | |
| 224058601 | 586 | predicted protein [Populus trichocarpa] | 0.979 | 0.960 | 0.638 | 1e-178 | |
| 147818808 | 588 | hypothetical protein VITISV_004395 [Viti | 0.928 | 0.908 | 0.581 | 1e-162 | |
| 356563216 | 557 | PREDICTED: uncharacterized protein LOC10 | 0.926 | 0.956 | 0.585 | 1e-162 | |
| 449506571 | 593 | PREDICTED: uncharacterized protein LOC10 | 0.975 | 0.946 | 0.556 | 1e-160 |
| >gi|255537297|ref|XP_002509715.1| ara4-interacting protein, putative [Ricinus communis] gi|223549614|gb|EEF51102.1| ara4-interacting protein, putative [Ricinus communis] | Back alignment and taxonomy information |
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Score = 697 bits (1800), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 392/598 (65%), Positives = 440/598 (73%), Gaps = 57/598 (9%)
Query: 1 MVRPNQEAIDTFISITGATESVAVQKLEEHSGDLNAAVNAHFSEGDRNTSLNATHQSSVP 60
M RPNQEAIDTFISITG TES+AVQKLEEH GDLNAAVNAHFSEGDR+T +SV
Sbjct: 1 MARPNQEAIDTFISITGVTESIAVQKLEEHHGDLNAAVNAHFSEGDRST----VRDTSVI 56
Query: 61 APQTDFMDIDDPIESVPREPPLSFLSGSRTLNPFSLLDPSSRRRFFDGASDFMSREPHVT 120
AP+ D MDIDDP+E PR P+S L+ + T+NPFSLLDP F+G SDF +R P V+
Sbjct: 57 APEDDLMDIDDPVEVAPRRNPMSLLTEASTMNPFSLLDPQFHSSLFNGGSDFTNRAPFVS 116
Query: 121 HPREVREIPIEVRDGGDPS---GHAPTIEDVTESANTHGPDNRGTAIIDEVDEDIPA--P 175
PRE REIPIEV+DG D S GHAP IEDVT + +TH PD GT I+D+ D DIPA P
Sbjct: 117 QPRERREIPIEVKDGSDASSRSGHAPIIEDVTGTVHTHEPDIHGTVIVDDED-DIPANQP 175
Query: 176 PAAQSTLRNDGRSS----------PTAPAFDNLADYSNDIEEEMIRAAIEASKQEAENVS 225
A G +S P+ P F+NL DYSNDIEEEMIRAAIEASK+EAE
Sbjct: 176 GRAAPWTEQRGDASGDGALERHAIPSVPEFNNLPDYSNDIEEEMIRAAIEASKREAE--- 232
Query: 226 GAGTEHRQPHLEDVDLAHAVSLSLRTAEQEKAQRELGGDVGASVAGASKPSEMELGKVAT 285
AEQEKA REL G VGAS GASKP +MELG V
Sbjct: 233 -------------------------EAEQEKALRELRGKVGASEMGASKPDKMELGTVVA 267
Query: 286 SNGRLEGGSLSIQEETEDVEEQPLVRHRSIHTSSGSGESDKEVGVTEVSSPPSPGQPDVS 345
SNGR GSLSIQEE EDVEEQPLVRHR+ TSSGS S +EVGV E S P SPGQ ++S
Sbjct: 268 SNGRERTGSLSIQEEAEDVEEQPLVRHRARRTSSGSVVSAREVGVIEASPPTSPGQNNLS 327
Query: 346 NQPQHNGNAFPSDEWGGISSEEHDEAVMLEAAMFGGIPE-SGYRFPYAPHQYMQPEGSYP 404
+ PQ NG++F SDEWGGISSEEHDEAVMLEAAMFGGIPE +GYRFPYAPHQ+MQ EGSY
Sbjct: 328 SHPQRNGDSF-SDEWGGISSEEHDEAVMLEAAMFGGIPEGTGYRFPYAPHQFMQAEGSYS 386
Query: 405 RRVPRPPSPSLEAQRLIREQQDDEYLASLQADREK-------AEARRLMEEEARNAALAE 457
R +PRPPSPSL+AQRLIREQQDDEYLASL ADREK AEARRL EE AR AAL E
Sbjct: 387 RGIPRPPSPSLQAQRLIREQQDDEYLASLAADREKEMKAMEEAEARRLQEEAARKAALEE 446
Query: 458 ERRKEEETRRKMEEQQEYERQLAAKEASLPQEPAPDDENAVTLLVRMPDGSRRGRRFLKS 517
+R KEEE+RRK+EE+ RQLAAKEASLPQEP DDENA+TLLVRMP+G+R GRRFLK+
Sbjct: 447 DRLKEEESRRKLEEEXXESRQLAAKEASLPQEPPSDDENAITLLVRMPNGTRCGRRFLKT 506
Query: 518 NKLQSLFDYIDVGRGIKAGTYRLVRPYPRRAFSDGESALTLNELGLTSKQEALFLELV 575
+ L+SLFD+ID+ R G+YRLVRPYPRRAFSDGES LTL ELGLT+KQEALFLEL+
Sbjct: 507 DNLRSLFDFIDIARVANPGSYRLVRPYPRRAFSDGESELTLRELGLTTKQEALFLELI 564
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Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356514058|ref|XP_003525724.1| PREDICTED: uncharacterized protein LOC100784059 [Glycine max] | Back alignment and taxonomy information |
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| >gi|224071726|ref|XP_002303564.1| predicted protein [Populus trichocarpa] gi|222840996|gb|EEE78543.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|225426846|ref|XP_002276758.1| PREDICTED: uncharacterized protein LOC100251323 [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|297742567|emb|CBI34716.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|356563214|ref|XP_003549859.1| PREDICTED: uncharacterized protein LOC100777000 isoform 1 [Glycine max] | Back alignment and taxonomy information |
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| >gi|224058601|ref|XP_002299560.1| predicted protein [Populus trichocarpa] gi|222846818|gb|EEE84365.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|147818808|emb|CAN71799.1| hypothetical protein VITISV_004395 [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|356563216|ref|XP_003549860.1| PREDICTED: uncharacterized protein LOC100777000 isoform 2 [Glycine max] | Back alignment and taxonomy information |
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| >gi|449506571|ref|XP_004162786.1| PREDICTED: uncharacterized protein LOC101228419 [Cucumis sativus] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 575 | ||||||
| TAIR|locus:2139787 | 564 | SAY1 [Arabidopsis thaliana (ta | 0.951 | 0.969 | 0.491 | 3.6e-121 | |
| TAIR|locus:2127198 | 525 | AT4G23040 "AT4G23040" [Arabido | 0.540 | 0.592 | 0.467 | 9.5e-78 | |
| TAIR|locus:504955540 | 469 | AT4G00752 "AT4G00752" [Arabido | 0.172 | 0.211 | 0.636 | 8.2e-55 | |
| DICTYBASE|DDB_G0269774 | 264 | DDB_G0269774 "UBX domain-conta | 0.154 | 0.337 | 0.322 | 4.4e-08 | |
| TAIR|locus:2132751 | 480 | AT4G10790 [Arabidopsis thalian | 0.266 | 0.318 | 0.268 | 2.3e-07 | |
| UNIPROTKB|F1NLG0 | 650 | FAF1 "Uncharacterized protein" | 0.154 | 0.136 | 0.391 | 3.3e-07 | |
| UNIPROTKB|Q9UNN5 | 650 | FAF1 "FAS-associated factor 1" | 0.154 | 0.136 | 0.391 | 7.4e-07 | |
| ZFIN|ZDB-GENE-040426-2863 | 683 | faf1 "Fas associated factor 1" | 0.154 | 0.130 | 0.369 | 1.1e-06 | |
| MGI|MGI:109419 | 649 | Faf1 "Fas-associated factor 1" | 0.154 | 0.137 | 0.369 | 1.6e-06 | |
| ZFIN|ZDB-GENE-040704-8 | 505 | ubxn7 "UBX domain protein 7" [ | 0.147 | 0.168 | 0.319 | 1.7e-06 |
| TAIR|locus:2139787 SAY1 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 1192 (424.7 bits), Expect = 3.6e-121, P = 3.6e-121
Identities = 291/592 (49%), Positives = 348/592 (58%)
Query: 1 MVRPNQEAIDTFISITGATESVAVQKLEEHSGDLNAAVNAHFSEGDRNTSLNATHQSSVP 60
M PNQEAIDTFISITGA+++VA+QKLEEH GDLN AVNA+FSEGDRN A P
Sbjct: 1 MATPNQEAIDTFISITGASDAVALQKLEEHRGDLNQAVNAYFSEGDRNVVREA------P 54
Query: 61 APQTDFMDIDDPIESVPREPPLSFLSGSRTLN--PFSLLDPSSRRRFFDGASDFMSREPH 118
D MDIDD I + P+ P LS + +RT+ PFSLLD RR FD + M R P
Sbjct: 55 VNDDDEMDIDDVIPA-PQSP-LSMFNAARTIGRPPFSLLDSDFARRVFD-SDPLMPRPPF 111
Query: 119 VTHPREVREIPIEVRDGGDPSGH---APTIEDVTESANTHGP-DNRGTAIIDEV-DEDIP 173
V+HPREVR+IPIEV+D PSG APTIEDVTE+A+ GP +GT IIDE D+DIP
Sbjct: 112 VSHPREVRQIPIEVKDSSGPSGRSSDAPTIEDVTETAHVQGPVTTQGTVIIDEESDDDIP 171
Query: 174 APPAAQSTLRNDGRSSPTAPAFDNLADYSNDXXXXXXXXXXXXSKQEAENVSGAGTEHRQ 233
P +S R D + A +N DY ND SK+EAE S E R
Sbjct: 172 FAPMGRS--RQDRPAGSVAN--NNNQDY-NDIEEEMIRAAIEASKKEAEGSSNPLLEERP 226
Query: 234 PHLEDVD-LAHAVSLSLRTAEQEKAQRELXXXXXXXXXXXXKPSEMELGKVATSNGRLEG 292
H+ED D +A AV++SL++AE+E + + + NGRL
Sbjct: 227 LHMEDDDDIAIAVTMSLKSAEEEVLRSQGYKASTSEIGASAVTAAQGPQDTQALNGRLAA 286
Query: 293 GSLSIQEETEDVEEQPLVRHRSIHTSSGSGESDKEVGVTEVSSPPSPGQPDVSNQPQHNG 352
S ++++DV+EQPLVRHR +SGS + S SP + S P G
Sbjct: 287 PSSPFDDDSDDVDEQPLVRHRPRRAASGSLAPPN----ADRSRSGSPEEEHASINPAERG 342
Query: 353 NAFPSDEWGGISSEEHDEAVMLEAAMFGGIPESGYR-FPYAPHQ-YMQPEGXXXXXXXXX 410
+ FPS EWGGISSEEHDEAVMLEAAMFGGIPE+GY P+ P Q QP
Sbjct: 343 SGFPS-EWGGISSEEHDEAVMLEAAMFGGIPETGYNHLPFLPPQPRAQPRPPSPS----- 396
Query: 411 XXXXLEAQRLIREQQDDEYLASLQADXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 470
L AQRLIREQQDDEY+ASLQAD
Sbjct: 397 ----LTAQRLIREQQDDEYVASLQADRDKEMKSIRDAEARQLEEETARKAFLEEEKKKEE 452
Query: 471 XXXX-------YERQLAAKEASLPQEPAPDDENAVTLLVRMPDGSRRGRRFLKSNKLQSL 523
ERQL AKEASLP+EP D+ENA+TLL+RMPDG+RRGRRFLKS+KLQ+L
Sbjct: 453 EAQRKLEEEQELERQLDAKEASLPKEPQADEENAITLLIRMPDGTRRGRRFLKSDKLQTL 512
Query: 524 FDYIDVGRGIKAGTYRLVRPYPRRAFSDGESALTLNELGLTSKQEALFLELV 575
F++ID+ R +K TYRLVRPYPR AF DGES TLN+LGLTSKQEALFLEL+
Sbjct: 513 FNFIDIARVVKPNTYRLVRPYPRHAFGDGESESTLNDLGLTSKQEALFLELI 564
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| TAIR|locus:2127198 AT4G23040 "AT4G23040" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:504955540 AT4G00752 "AT4G00752" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| DICTYBASE|DDB_G0269774 DDB_G0269774 "UBX domain-containing protein" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
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| TAIR|locus:2132751 AT4G10790 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F1NLG0 FAF1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q9UNN5 FAF1 "FAS-associated factor 1" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
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| ZFIN|ZDB-GENE-040426-2863 faf1 "Fas associated factor 1" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
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| MGI|MGI:109419 Faf1 "Fas-associated factor 1" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
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| ZFIN|ZDB-GENE-040704-8 ubxn7 "UBX domain protein 7" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | eugene3.00030950 | SubName- Full=Putative uncharacterized protein; (590 aa) | ||||||
(Populus trichocarpa) | ||||||||
| Sorry, there are no predicted associations at the current settings. |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 575 | |||
| pfam00789 | 78 | pfam00789, UBX, UBX domain | 6e-20 | |
| cd01767 | 77 | cd01767, UBX, UBX (ubiquitin regulatory X) domain | 5e-13 | |
| smart00166 | 77 | smart00166, UBX, Domain present in ubiquitin-regul | 3e-11 | |
| cd01771 | 80 | cd01771, Faf1_UBX, Faf1 UBX domain | 2e-09 | |
| cd01772 | 79 | cd01772, SAKS1_UBX, SAKS1-like UBX domain | 7e-06 | |
| pfam06098 | 288 | pfam06098, Radial_spoke_3, Radial spoke protein 3 | 0.003 |
| >gnl|CDD|216120 pfam00789, UBX, UBX domain | Back alignment and domain information |
|---|
Score = 83.9 bits (208), Expect = 6e-20
Identities = 30/80 (37%), Positives = 42/80 (52%), Gaps = 2/80 (2%)
Query: 495 ENAVTLLVRMPDGSRRGRRFLKSNKLQSLFDYIDVGRGIKAGTYRLVRPYPRRAFSDGES 554
E+ L +R+PDGSR RRF S+ LQ ++D++D R + L +PRR +D +
Sbjct: 1 EDVCRLQIRLPDGSRLVRRFNSSDPLQDVYDFVDSNRYDDDEPFSLNTNFPRRPLTDDDD 60
Query: 555 ALTLNELGLTSKQEALFLEL 574
TL E GL L LE
Sbjct: 61 K-TLKEAGLL-PNSTLVLEP 78
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This domain is present in ubiquitin-regulatory proteins and is a general Cdc48-interacting module. Length = 78 |
| >gnl|CDD|176362 cd01767, UBX, UBX (ubiquitin regulatory X) domain | Back alignment and domain information |
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| >gnl|CDD|197552 smart00166, UBX, Domain present in ubiquitin-regulatory proteins | Back alignment and domain information |
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| >gnl|CDD|176366 cd01771, Faf1_UBX, Faf1 UBX domain | Back alignment and domain information |
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| >gnl|CDD|176367 cd01772, SAKS1_UBX, SAKS1-like UBX domain | Back alignment and domain information |
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| >gnl|CDD|218896 pfam06098, Radial_spoke_3, Radial spoke protein 3 | Back alignment and domain information |
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Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 575 | |||
| KOG1363 | 460 | consensus Predicted regulator of the ubiquitin pat | 100.0 | |
| cd01773 | 82 | Faf1_like1_UBX Faf1 ike-1 UBX domain. Faf1_like1 i | 99.83 | |
| cd01771 | 80 | Faf1_UBX Faf1 UBX domain. Faf1 (fas-associated fac | 99.83 | |
| cd01774 | 85 | Faf1_like2_UBX Faf1 ike-2 UBX domain. Faf1_like2 i | 99.81 | |
| cd01772 | 79 | SAKS1_UBX SAKS1-like UBX domain. SAKS1 (SAPK-subst | 99.79 | |
| smart00166 | 80 | UBX Domain present in ubiquitin-regulatory protein | 99.79 | |
| cd01767 | 77 | UBX UBX (ubiquitin regulatory X) domain. The UBX ( | 99.76 | |
| PF00789 | 82 | UBX: UBX domain; InterPro: IPR001012 The UBX domai | 99.75 | |
| cd01770 | 79 | p47_UBX p47-like ubiquitin domain. p47_UBX p47 is | 99.7 | |
| KOG2689 | 290 | consensus Predicted ubiquitin regulatory protein [ | 99.66 | |
| KOG2507 | 506 | consensus Ubiquitin regulatory protein UBXD2, cont | 99.54 | |
| KOG1364 | 356 | consensus Predicted ubiquitin regulatory protein, | 99.42 | |
| PF14555 | 43 | UBA_4: UBA-like domain; PDB: 2DAL_A 3BQ3_A 2L4E_A | 99.29 | |
| KOG2086 | 380 | consensus Protein tyrosine phosphatase SHP1/Cofact | 98.96 | |
| cd01806 | 76 | Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also kn | 97.0 | |
| PF11543 | 80 | UN_NPL4: Nuclear pore localisation protein NPL4; I | 96.64 | |
| cd01792 | 80 | ISG15_repeat1 ISG15 ubiquitin-like protein, first | 96.41 | |
| cd01807 | 74 | GDX_N ubiquitin-like domain of GDX. GDX contains a | 96.39 | |
| PTZ00044 | 76 | ubiquitin; Provisional | 96.36 | |
| cd01791 | 73 | Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also know | 96.34 | |
| cd01809 | 72 | Scythe_N Ubiquitin-like domain of Scythe protein. | 96.27 | |
| cd01803 | 76 | Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40 | 96.08 | |
| cd01794 | 70 | DC_UbP_C dendritic cell derived ubiquitin-like pro | 96.06 | |
| PF03943 | 51 | TAP_C: TAP C-terminal domain; InterPro: IPR005637 | 96.05 | |
| cd01798 | 70 | parkin_N amino-terminal ubiquitin-like of parkin p | 95.78 | |
| cd01804 | 78 | midnolin_N Ubiquitin-like domain of midnolin. midn | 95.73 | |
| cd01805 | 77 | RAD23_N Ubiquitin-like domain of RAD23. RAD23 belo | 95.61 | |
| cd01812 | 71 | BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-ter | 95.52 | |
| PF00627 | 37 | UBA: UBA/TS-N domain; InterPro: IPR000449 UBA doma | 95.45 | |
| cd01763 | 87 | Sumo Small ubiquitin-related modifier (SUMO). Smal | 95.39 | |
| cd01810 | 74 | ISG15_repeat2 ISG15 ubiquitin-like protein, second | 95.36 | |
| PF00240 | 69 | ubiquitin: Ubiquitin family; InterPro: IPR000626 U | 95.06 | |
| cd01808 | 71 | hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC | 94.98 | |
| cd01796 | 71 | DDI1_N DNA damage inducible protein 1 ubiquitin-li | 94.49 | |
| cd01802 | 103 | AN1_N ubiquitin-like domain of AN1. AN1 (also know | 94.47 | |
| cd00194 | 38 | UBA Ubiquitin Associated domain. The UBA domain is | 94.25 | |
| smart00804 | 63 | TAP_C C-terminal domain of vertebrate Tap protein. | 94.09 | |
| smart00165 | 37 | UBA Ubiquitin associated domain. Present in Rad23, | 94.03 | |
| PRK06369 | 115 | nac nascent polypeptide-associated complex protein | 92.78 | |
| TIGR00264 | 116 | alpha-NAC-related protein. This hypothetical prote | 92.7 | |
| cd01814 | 113 | NTGP5 Ubiquitin-like NTGP5 and ATGP4. NTGP5 and AT | 92.65 | |
| TIGR00601 | 378 | rad23 UV excision repair protein Rad23. All protei | 92.55 | |
| smart00213 | 64 | UBQ Ubiquitin homologues. Ubiquitin-mediated prote | 92.54 | |
| cd01769 | 69 | UBL Ubiquitin-like domain of UBL. UBLs function by | 92.12 | |
| cd01797 | 78 | NIRF_N amino-terminal ubiquitin-like domain of Np9 | 92.04 | |
| cd01813 | 74 | UBP_N UBP ubiquitin processing protease. The UBP ( | 91.91 | |
| COG1308 | 122 | EGD2 Transcription factor homologous to NACalpha-B | 91.47 | |
| cd01793 | 74 | Fubi Fubi ubiquitin-like protein. Fubi is a ubiqui | 91.02 | |
| PF11976 | 72 | Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; Inter | 90.79 | |
| cd00196 | 69 | UBQ Ubiquitin-like proteins. Ubiquitin homologs; I | 90.39 | |
| PF13881 | 111 | Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB | 90.18 | |
| KOG2086 | 380 | consensus Protein tyrosine phosphatase SHP1/Cofact | 89.37 | |
| PF14560 | 87 | Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2K | 88.1 | |
| cd01800 | 76 | SF3a120_C Ubiquitin-like domain of Mammalian splic | 87.16 | |
| cd01799 | 75 | Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HO | 86.95 | |
| PF14836 | 88 | Ubiquitin_3: Ubiquitin-like domain; PDB: 3JYU_A 4A | 81.16 |
| >KOG1363 consensus Predicted regulator of the ubiquitin pathway (contains UAS and UBX domains) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-41 Score=359.33 Aligned_cols=444 Identities=28% Similarity=0.320 Sum_probs=309.0
Q ss_pred hcCCHHHHHHHHHhcCCCcccccccCCCCCCCCCCCccCCCCCCCCCCCCCCccccccccCCCCCCCCCccccccccCCC
Q 008174 30 HSGDLNAAVNAHFSEGDRNTSLNATHQSSVPAPQTDFMDIDDPIESVPREPPLSFLSGSRTLNPFSLLDPSSRRRFFDGA 109 (575)
Q Consensus 30 ~~~dL~~Avn~~f~~~~~~~~~~~~~~~~~~~p~~d~m~~ddp~~~~~~~~~~~~~~~~~~~~pf~lldp~~~~~~f~~~ 109 (575)
++|||+.|++.++...+-.... .......+.|.++++.+..- +.++. -.-.-+||.++||.|..+++++.
T Consensus 2 ~~~d~~~~i~~~~~~~~~~~~e----~~~~~~~~~~~~~~~~~~~~-~~~~~-----r~~~~~~~~~vd~~~~~r~~~~~ 71 (460)
T KOG1363|consen 2 ANWDLVEAIEGVLPQEDGALSE----EPMGEPGQNDDEDANQEAPP-PLRPR-----RTIFADPFPVVDPDFNYRDDNVD 71 (460)
T ss_pred ccHhHHHHHhhcccccCccccc----ccccCCCccccccccCCCCC-ccCCc-----ccccCCccccccchhcccccCCC
Confidence 6899999999998887755544 22222334554555533321 12222 11112799999999988888843
Q ss_pred CCCCCCCCCCCCCCcccccceeecCCCCC---CCCCCcccccccccccCCCCCCcceeecCCCC-CCCCC-cc-------
Q 008174 110 SDFMSREPHVTHPREVREIPIEVRDGGDP---SGHAPTIEDVTESANTHGPDNRGTAIIDEVDE-DIPAP-PA------- 177 (575)
Q Consensus 110 ~~~~~~~p~vshprevr~ipie~kd~~~~---s~~~p~iedvt~~~~~~gp~~~gtv~~d~~~~-~~~~~-~~------- 177 (575)
.. +|+++|.|+++++.+++.|++++.. +...++++||+.+.+.++| .++.+++|+..+ ++.++ .+
T Consensus 72 ~~--~~~~~v~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~s~p~~~~~~~f~ 148 (460)
T KOG1363|consen 72 VS--PRPNTVGESKEIRSNEGGVPSSNGLLGGWSDNRTTEDVLSLALSLLP-LQSIVGGDPSSGDNIVSTPQGDSRETFV 148 (460)
T ss_pred cc--cCCCcccccceeeccCCCccccccccccccccccccccchhhhhcCc-hhhccccCCCCCCccccCCcchHHHHHH
Confidence 33 8999999999999999999999888 7778899999999999999 999999988754 55555 33
Q ss_pred -cccccCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHHHhHHHHhhccCCCCCCCCCCCccchhhhhhhhhhhHHHHHH
Q 008174 178 -AQSTLRNDGRSSPTAPAFDNLADYSNDIEEEMIRAAIEASKQEAENVSGAGTEHRQPHLEDVDLAHAVSLSLRTAEQEK 256 (575)
Q Consensus 178 -~~~~~~~~~~~~p~~~~~~~~~~~~ndieeemiraaieask~~~~~~~~~~~~~~~~~~ed~d~a~avslsl~~~~~~~ 256 (575)
..++.+... +|.+.-|+ |--|+-||++++...- ..+.- ..|.
T Consensus 149 ~~f~~ry~~~-----------~p~F~~d~---l~~a~~~A~~~~~~~~-~~l~~--~~~~-------------------- 191 (460)
T KOG1363|consen 149 DNFGDRYGSE-----------LPSFYTDV---LRNAFLEAFDRESEAR-KLLAI--YLHD-------------------- 191 (460)
T ss_pred HHHHHhcCCC-----------CCccchhH---HHHHHHHHHhhhhhhh-eeeEE--ecCC--------------------
Confidence 111111111 23333332 3446677777762211 11000 0000
Q ss_pred HHHHhcCccCccccCCCCCccccccccccCCCccCCCCCCccccccccccCccccccccccCCCCCCCccccccccCCCC
Q 008174 257 AQRELGGDVGASVAGASKPSEMELGKVATSNGRLEGGSLSIQEETEDVEEQPLVRHRSIHTSSGSGESDKEVGVTEVSSP 336 (575)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~pl~r~r~r~~~~~~~~~~~~~~~~~~~p~ 336 (575)
+ ....++.+....+..+...+...+++|+.++ .++.++++-........ ++.
T Consensus 192 ------------------------~-~~~~~~~F~~~iL~~e~v~~~l~~~~llw~~-dvt~~e~~~~~~~~~~r--~~~ 243 (460)
T KOG1363|consen 192 ------------------------D-KSDDTNVFCGQILCNEAVVDYLRENFLLWGW-DVTESENLLVFNSLLNR--SIS 243 (460)
T ss_pred ------------------------C-CcccHHHHHHhhhhhHHHHHHHhhceeeecc-cccCchhhHHHHHHhhc--ccc
Confidence 0 1122333555556677777778899999999 66666666655555555 222
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCChhhhhHHHHHHHHHhCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCccH
Q 008174 337 PSPGQPDVSNQPQHNGNAFPSDEWGGISSEEHDEAVMLEAAMFGGIPESGYR-FPYAPHQYMQPEGSYPRRVPRPPSPSL 415 (575)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~f~~~ewggi~s~e~dea~mleaa~~g~~p~~~~~-~~~~~~~~~~~~~~~~~~i~R~~~~~l 415 (575)
+... +.+... +++.| |..|++|+++.++|++|+.++|+|++.+..+- .++..+.. ..+.|...+..
T Consensus 244 ~~~~---~~~~~~-~~~~f-P~~~iv~~~~~~~Ell~~l~g~~~~~e~~~~~~~~~~~~~~--------~~q~~~~~~~e 310 (460)
T KOG1363|consen 244 SPAA---VTNKAS-KSERF-PLVRIVIGSRSPEELLRYLQGVTGVDEEMTLLLVAFEEEER--------RLQMRRSEQDE 310 (460)
T ss_pred hhhh---hhcchh-hcccC-chhhhhhcCCCHHHHHHHHHhcCCchHHHHHHHhhhhhhhH--------HHhhcccchhH
Confidence 1111 112333 67887 99999999999999999999999999885543 33322222 12556777777
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCC
Q 008174 416 EAQRLIREQ-QDDEYLASLQADREKAEARRLMEEEARNAALAEERRKEEETRRKMEEQQEYERQLAAKEASLPQEPAPDD 494 (575)
Q Consensus 416 e~~R~LREE-QDeAY~eSLraDrEK~e~Rr~EEE~aRkaaeEeeRrkEEE~~rk~ee~eeler~l~~K~asLP~EP~~~~ 494 (575)
.++|+++++ ||.+|++||++|+.|+.++. ++++++.++++| +.++++++..+++.|+..+||+||++..
T Consensus 311 r~~r~~~~~eQd~eyq~sle~Dr~r~~e~e---~~~e~~r~e~er-------~~~~ee~e~~R~~l~~es~lp~EP~a~~ 380 (460)
T KOG1363|consen 311 REARLALEQEQDDEYQASLEADRVREAEAE---QAAEEFRLEKER-------KEEEEERETARQLLALESSLPPEPSASE 380 (460)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHH---HhhHHHHHhhhh-------hhHHHHHHHHHHHHhhhccCCCCCCcCc
Confidence 777776665 59999999999999921111 111111112222 2223456777889999999999998888
Q ss_pred CCceEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhcCCCCCcCeEEEcCCCCcccCCCCcccchhhcCCCCCceeEEEee
Q 008174 495 ENAVTLLVRMPDGSRRGRRFLKSNKLQSLFDYIDVGRGIKAGTYRLVRPYPRRAFSDGESALTLNELGLTSKQEALFLEL 574 (575)
Q Consensus 495 ~~~vrIqIRLPDGsRi~RRF~~SDTLqdLydFVd~~~~~~p~~F~LvT~FPRR~ft~eD~skTLeElGL~PsqaaL~VE~ 574 (575)
.++++|+||||+|.|+.|||.+++++++||+||+++ +..+..|.|+++|||+.|......+||+++||+|+|++||||.
T Consensus 381 ~~~~~l~iR~P~G~r~~RrF~~s~~~q~l~~~v~~~-~~~~~e~~~~~~fPr~~~~~~~~~~sl~~~~l~p~qe~lflE~ 459 (460)
T KOG1363|consen 381 EEAITVAIRLPSGTRLERRFLKSDKLQILYDYVDSN-GFHPEEYSLNTSFPRRPLGDYEHSSSLQDIGLTPRQETLFLEE 459 (460)
T ss_pred ccceeeEEECCCCCeeeeeeecccchhHHHHHHHhc-cCCchhhccccCCCcccccccccccccccCCcccccceeeeec
Confidence 899999999999999999999999999999999865 5788999999999999999888899999999999889999997
Q ss_pred C
Q 008174 575 V 575 (575)
Q Consensus 575 I 575 (575)
+
T Consensus 460 ~ 460 (460)
T KOG1363|consen 460 I 460 (460)
T ss_pred C
Confidence 5
|
|
| >cd01773 Faf1_like1_UBX Faf1 ike-1 UBX domain | Back alignment and domain information |
|---|
| >cd01771 Faf1_UBX Faf1 UBX domain | Back alignment and domain information |
|---|
| >cd01774 Faf1_like2_UBX Faf1 ike-2 UBX domain | Back alignment and domain information |
|---|
| >cd01772 SAKS1_UBX SAKS1-like UBX domain | Back alignment and domain information |
|---|
| >smart00166 UBX Domain present in ubiquitin-regulatory proteins | Back alignment and domain information |
|---|
| >cd01767 UBX UBX (ubiquitin regulatory X) domain | Back alignment and domain information |
|---|
| >PF00789 UBX: UBX domain; InterPro: IPR001012 The UBX domain is found in ubiquitin-regulatory proteins, which are members of the ubiquitination pathway, as well as a number of other proteins including FAF-1 (FAS-associated factor 1), the human Rep-8 reproduction protein and several hypothetical proteins from yeast | Back alignment and domain information |
|---|
| >cd01770 p47_UBX p47-like ubiquitin domain | Back alignment and domain information |
|---|
| >KOG2689 consensus Predicted ubiquitin regulatory protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only] | Back alignment and domain information |
|---|
| >KOG1364 consensus Predicted ubiquitin regulatory protein, contains UAS and UBX domains [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PF14555 UBA_4: UBA-like domain; PDB: 2DAL_A 3BQ3_A 2L4E_A 2L4F_A 2DZL_A 2L2D_A 2DAM_A 1V92_A 3E21_A | Back alignment and domain information |
|---|
| >KOG2086 consensus Protein tyrosine phosphatase SHP1/Cofactor for p97 ATPase-mediated vesicle membrane fusion [Nuclear structure] | Back alignment and domain information |
|---|
| >cd01806 Nedd8 Nebb8-like ubiquitin protein | Back alignment and domain information |
|---|
| >PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway | Back alignment and domain information |
|---|
| >cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2 | Back alignment and domain information |
|---|
| >cd01807 GDX_N ubiquitin-like domain of GDX | Back alignment and domain information |
|---|
| >PTZ00044 ubiquitin; Provisional | Back alignment and domain information |
|---|
| >cd01791 Ubl5 UBL5 ubiquitin-like modifier | Back alignment and domain information |
|---|
| >cd01809 Scythe_N Ubiquitin-like domain of Scythe protein | Back alignment and domain information |
|---|
| >cd01803 Ubiquitin Ubiquitin | Back alignment and domain information |
|---|
| >cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein | Back alignment and domain information |
|---|
| >PF03943 TAP_C: TAP C-terminal domain; InterPro: IPR005637 This entry contains the NXF family of shuttling transport receptors for nuclear export of mRNA, which include: vertebrate mRNA export factor TAP or nuclear RNA export factor 1 (NXF1) | Back alignment and domain information |
|---|
| >cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein | Back alignment and domain information |
|---|
| >cd01804 midnolin_N Ubiquitin-like domain of midnolin | Back alignment and domain information |
|---|
| >cd01805 RAD23_N Ubiquitin-like domain of RAD23 | Back alignment and domain information |
|---|
| >cd01812 BAG1_N Ubiquitin-like domain of BAG1 | Back alignment and domain information |
|---|
| >PF00627 UBA: UBA/TS-N domain; InterPro: IPR000449 UBA domains are a commonly occurring sequence motif of approximately 45 amino acid residues that are found in diverse proteins involved in the ubiquitin/proteasome pathway, DNA excision-repair, and cell signalling via protein kinases [] | Back alignment and domain information |
|---|
| >cd01763 Sumo Small ubiquitin-related modifier (SUMO) | Back alignment and domain information |
|---|
| >cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2 | Back alignment and domain information |
|---|
| >PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade | Back alignment and domain information |
|---|
| >cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2 | Back alignment and domain information |
|---|
| >cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain | Back alignment and domain information |
|---|
| >cd01802 AN1_N ubiquitin-like domain of AN1 | Back alignment and domain information |
|---|
| >cd00194 UBA Ubiquitin Associated domain | Back alignment and domain information |
|---|
| >smart00804 TAP_C C-terminal domain of vertebrate Tap protein | Back alignment and domain information |
|---|
| >smart00165 UBA Ubiquitin associated domain | Back alignment and domain information |
|---|
| >PRK06369 nac nascent polypeptide-associated complex protein; Reviewed | Back alignment and domain information |
|---|
| >TIGR00264 alpha-NAC-related protein | Back alignment and domain information |
|---|
| >cd01814 NTGP5 Ubiquitin-like NTGP5 and ATGP4 | Back alignment and domain information |
|---|
| >TIGR00601 rad23 UV excision repair protein Rad23 | Back alignment and domain information |
|---|
| >smart00213 UBQ Ubiquitin homologues | Back alignment and domain information |
|---|
| >cd01769 UBL Ubiquitin-like domain of UBL | Back alignment and domain information |
|---|
| >cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF | Back alignment and domain information |
|---|
| >cd01813 UBP_N UBP ubiquitin processing protease | Back alignment and domain information |
|---|
| >COG1308 EGD2 Transcription factor homologous to NACalpha-BTF3 [Transcription] | Back alignment and domain information |
|---|
| >cd01793 Fubi Fubi ubiquitin-like protein | Back alignment and domain information |
|---|
| >PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins | Back alignment and domain information |
|---|
| >cd00196 UBQ Ubiquitin-like proteins | Back alignment and domain information |
|---|
| >PF13881 Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB: 1SE9_A 1WGH_A 2GOW_A | Back alignment and domain information |
|---|
| >KOG2086 consensus Protein tyrosine phosphatase SHP1/Cofactor for p97 ATPase-mediated vesicle membrane fusion [Nuclear structure] | Back alignment and domain information |
|---|
| >PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A | Back alignment and domain information |
|---|
| >cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120 | Back alignment and domain information |
|---|
| >cd01799 Hoil1_N Ubiquitin-like domain of HOIL1 | Back alignment and domain information |
|---|
| >PF14836 Ubiquitin_3: Ubiquitin-like domain; PDB: 3JYU_A 4A3O_B 3PPA_A 3T9L_A 4A3P_A 3PV1_A | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 575 | ||||
| 2cr5_A | 109 | Solution Structure Of The Ubx Domain Of D0h8s2298e | 4e-07 | ||
| 3qq8_B | 85 | Crystal Structure Of P97-N In Complex With Faf1-Ubx | 3e-06 | ||
| 1h8c_A | 82 | Ubx Domain From Human Faf1 Length = 82 | 4e-06 | ||
| 3qx1_A | 84 | Crystal Structure Of Faf1 Ubx Domain Length = 84 | 5e-06 | ||
| 3qca_A | 84 | Crystal Structure Of Faf1 Ubx Domain In Complex Wit | 6e-06 | ||
| 3qwz_B | 84 | Crystal Structure Of Faf1 Ubx-P97n-Domain Complex L | 1e-05 |
| >pdb|2CR5|A Chain A, Solution Structure Of The Ubx Domain Of D0h8s2298e Protein Length = 109 | Back alignment and structure |
|
| >pdb|3QQ8|B Chain B, Crystal Structure Of P97-N In Complex With Faf1-Ubx Length = 85 | Back alignment and structure |
| >pdb|1H8C|A Chain A, Ubx Domain From Human Faf1 Length = 82 | Back alignment and structure |
| >pdb|3QX1|A Chain A, Crystal Structure Of Faf1 Ubx Domain Length = 84 | Back alignment and structure |
| >pdb|3QCA|A Chain A, Crystal Structure Of Faf1 Ubx Domain In Complex With P97VCP N DOMAIN Reveals The Conserved Fcisp Touch-Turn Motif Of Ubx Domain Suffering Conformational Change Length = 84 | Back alignment and structure |
| >pdb|3QWZ|B Chain B, Crystal Structure Of Faf1 Ubx-P97n-Domain Complex Length = 84 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2 Length = 109 | Back alignment and structure |
|---|
Score = 97.2 bits (242), Expect = 2e-24
Identities = 32/94 (34%), Positives = 47/94 (50%), Gaps = 3/94 (3%)
Query: 480 AAKEASLPQEPAPDDENAVTLLVRMPDGSRRGRRFLKSNKLQSLFDYIDVGRGIKAGTYR 539
+ + LP+EP+ E VT+ +R P+G RRF KS Q L D++ G YR
Sbjct: 6 SGEVPDLPEEPSETAEEVVTVALRCPNGRVLRRRFFKSWNSQVLLDWMM-KVGYHKSLYR 64
Query: 540 LVRPYPRRAFSDGESALTLNELGLTSKQEALFLE 573
L +PRRA E +L ++G+T L +E
Sbjct: 65 LSTSFPRRALEV-EGGSSLEDIGIT-VDTVLNVE 96
|
| >3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A Length = 84 | Back alignment and structure |
|---|
| >1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2 Length = 124 | Back alignment and structure |
|---|
| >2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A Length = 109 | Back alignment and structure |
|---|
| >1s3s_G P47 protein; AAA ATPase, protein-protein complex, UBX domain, protein binding; HET: ADP; 2.90A {Rattus norvegicus} SCOP: d.15.1.2 PDB: 1i42_A 1jru_A Length = 127 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 | Back alignment and structure |
|---|
| >1v92_A NSFL1 cofactor P47; 3-helix bundle, recombination; NMR {Rattus norvegicus} SCOP: a.5.2.3 Length = 46 | Back alignment and structure |
|---|
| >2dal_A Protein KIAA0794; FAS associted factor 1, UBA-like domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 62 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 575 | |||
| 2cr5_A | 109 | Reproduction 8; UBX domain, D0H8S2298E protein, st | 99.85 | |
| 2dzk_A | 109 | UBX domain-containing protein 2; ubiquitin-like fo | 99.8 | |
| 3qx1_A | 84 | FAS-associated factor 1; UBX, protein binding, P97 | 99.8 | |
| 1wj4_A | 124 | KIAA0794 protein; UBX domain, beta-grAsp fold, str | 99.77 | |
| 1s3s_G | 127 | P47 protein; AAA ATPase, protein-protein complex, | 99.64 | |
| 1v92_A | 46 | NSFL1 cofactor P47; 3-helix bundle, recombination; | 99.15 | |
| 2dal_A | 62 | Protein KIAA0794; FAS associted factor 1, UBA-like | 99.03 | |
| 2dzl_A | 66 | Protein FAM100B; UBA-like domain, structural genom | 99.01 | |
| 2dam_A | 67 | ETEA protein; KIAA0887, UBA-like domain, structura | 98.97 | |
| 3e21_A | 45 | HFAF1, FAS-associated factor 1; UBA, alternative s | 98.93 | |
| 2kzr_A | 86 | Ubiquitin thioesterase OTU1; structural genomics, | 98.5 | |
| 3bq3_A | 270 | Defective in cullin neddylation protein 1; ubiquit | 98.46 | |
| 1ttn_A | 106 | DC-UBP, dendritic cell-derived ubiquitin-like prot | 97.09 | |
| 2pjh_A | 80 | Protein NPL4, nuclear protein localization protein | 97.04 | |
| 1wj7_A | 104 | Hypothetical protein (RSGI RUH-015); UBA domain, u | 96.95 | |
| 1z96_A | 40 | DNA-damage, UBA-domain protein MUD1; ubiquitin, th | 96.91 | |
| 2dzi_A | 81 | Ubiquitin-like protein 4A; GDX, structural genomic | 96.74 | |
| 4gew_A | 362 | 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosy | 96.71 | |
| 1ndd_A | 76 | NEDD8, protein (ubiquitin-like protein NEDD8); pro | 96.68 | |
| 1wju_A | 100 | NEDD8 ultimate buster-1; ubiquitin-like domain, st | 96.66 | |
| 3mtn_B | 85 | UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquit | 96.61 | |
| 3a9j_A | 76 | Ubiquitin; protein complex, cytoplasm, isopeptide | 96.54 | |
| 3v6c_B | 91 | Ubiquitin; structural genomics, structural genomic | 96.45 | |
| 1wh3_A | 87 | 59 kDa 2'-5'-oligoadenylate synthetase like protei | 96.44 | |
| 2bwf_A | 77 | Ubiquitin-like protein DSK2; signaling protein, UB | 96.36 | |
| 1yx5_B | 98 | Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo s | 96.33 | |
| 2hj8_A | 88 | Interferon-induced 17 kDa protein; HR2873B, human | 96.32 | |
| 3dbh_I | 88 | NEDD8; cell cycle, activating enzyme, apoptosis, m | 96.31 | |
| 1wjn_A | 97 | Tubulin-folding protein TBCE; ubiquitin-like domai | 96.26 | |
| 2wyq_A | 85 | HHR23A, UV excision repair protein RAD23 homolog A | 96.11 | |
| 3phx_B | 79 | Ubiquitin-like protein ISG15; OTU domain, DE-ubiqu | 96.06 | |
| 4hcn_B | 98 | Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidas | 96.05 | |
| 3k9o_B | 96 | Ubiquitin, UBB+1; E2-25K, complex structure, ATP-b | 96.0 | |
| 2g3q_A | 43 | Protein YBL047C; endocytosis, solution structure, | 96.0 | |
| 4dwf_A | 90 | HLA-B-associated transcript 3; ubiquitin-like doma | 95.94 | |
| 1uel_A | 95 | HHR23B, UV excision repair protein RAD23 homolog B | 95.93 | |
| 1wyw_B | 97 | Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Ho | 95.84 | |
| 1wy8_A | 89 | NP95-like ring finger protein, isoform A; ubiquiti | 95.81 | |
| 1j8c_A | 125 | Ubiquitin-like protein hplic-2; ubiquitin-like dom | 95.79 | |
| 2uyz_B | 79 | Small ubiquitin-related modifier 1; sumoylation, c | 95.78 | |
| 2faz_A | 78 | Ubiquitin-like containing PHD and ring finger DOM | 95.76 | |
| 3n3k_B | 85 | Ubiquitin; hydrolase, protease, thiol protease, DU | 95.76 | |
| 2kan_A | 94 | Uncharacterized protein AR3433A; ubiquitin fold, a | 95.73 | |
| 1wx8_A | 96 | Riken cDNA 4931431F19; ubiquitin-like domain, ubiq | 95.73 | |
| 1vg5_A | 73 | RSGI RUH-014, rhomboid family protein; UBA domain, | 95.58 | |
| 1we6_A | 111 | Splicing factor, putative; structural genomics, ub | 95.56 | |
| 1uh6_A | 100 | Ubiquitin-like 5; beta-grAsp fold, structural geno | 95.55 | |
| 1wx7_A | 106 | Ubiquilin 3; ubiquitin-like domain, structural gen | 95.54 | |
| 1sif_A | 88 | Ubiquitin; hydrophobic mutants, folding, stability | 95.53 | |
| 1wia_A | 95 | Hypothetical ubiquitin-like protein (riken cDNA 20 | 95.53 | |
| 1veg_A | 83 | NEDD8 ultimate buster-1; ubiquitin associated doma | 95.51 | |
| 2klc_A | 101 | Ubiquilin-1; ubiquitin-like, structural genomics, | 95.44 | |
| 3vdz_A | 111 | Ubiquitin-40S ribosomal protein S27A; gadolinium, | 95.39 | |
| 4eew_A | 88 | Large proline-rich protein BAG6; ubiquitin-like fo | 95.38 | |
| 2ojr_A | 111 | Ubiquitin; lanthide-binding TAG, terbium, TB, SAD | 95.37 | |
| 1oai_A | 59 | Nuclear RNA export factor; nuclear transport, nucl | 95.35 | |
| 1we7_A | 115 | SF3A1 protein; structural genomics, ubiquitin-like | 95.31 | |
| 2l2d_A | 73 | OTU domain-containing protein 7A; UBA fold, struct | 95.23 | |
| 2kk8_A | 84 | Uncharacterized protein AT4G05270; solution arabid | 95.19 | |
| 3m62_B | 106 | UV excision repair protein RAD23; armadillo-like r | 95.16 | |
| 3b08_A | 152 | Polyubiquitin-C, ubiquitin; protein complex, signa | 95.16 | |
| 4fbj_B | 88 | NEDD8; effector-HOST target complex, glutamine dea | 95.05 | |
| 2dai_A | 83 | Ubadc1, ubiquitin associated domain containing 1; | 95.04 | |
| 1yqb_A | 100 | Ubiquilin 3; structural genomics consortium, ubiqu | 95.01 | |
| 2kd0_A | 85 | LRR repeats and ubiquitin-like domain-containing p | 94.86 | |
| 2dkl_A | 85 | Trinucleotide repeat containing 6C protein; TNRC6C | 94.85 | |
| 1wxv_A | 92 | BAG-family molecular chaperone regulator-1; struct | 94.76 | |
| 2jp7_A | 57 | MRNA export factor MEX67; solution MEX67, UBA, tra | 94.76 | |
| 1vek_A | 84 | UBP14, ubiquitin-specific protease 14, putative; U | 94.7 | |
| 1v86_A | 95 | DNA segment, CHR 7, wayne state university 128, ex | 94.65 | |
| 2kdi_A | 114 | Ubiquitin, vacuolar protein sorting-associated pro | 94.64 | |
| 1wji_A | 63 | Tudor domain containing protein 3; UBA domain, str | 94.64 | |
| 2dak_A | 63 | Ubiquitin carboxyl-terminal hydrolase 5; isopeptid | 94.62 | |
| 1wiv_A | 73 | UBP14, ubiquitin-specific protease 14; ubiquitin a | 94.58 | |
| 3b08_A | 152 | Polyubiquitin-C, ubiquitin; protein complex, signa | 94.54 | |
| 3u30_A | 172 | Ubiquitin, linear DI-ubiquitin; immune system; 2.4 | 94.53 | |
| 2kjr_A | 95 | CG11242; UBL, ubiquitin, ubiquitin-like, structura | 94.37 | |
| 1ify_A | 49 | HHR23A, UV excision repair protein RAD23 homolog A | 94.2 | |
| 4a20_A | 98 | Ubiquitin-like protein MDY2; protein binding, GET- | 94.2 | |
| 1wgd_A | 93 | Homocysteine-responsive endoplasmic reticulum- res | 94.18 | |
| 1q0v_A | 81 | Hydrophilic protein; has cysteine rich putative zi | 94.13 | |
| 3plu_A | 93 | Ubiquitin-like modifier HUB1; ubiquitin-like, HUB- | 94.1 | |
| 1v5o_A | 102 | 1700011N24RIK protein; hypothetical protein, ubiqu | 93.97 | |
| 2l7r_A | 93 | Ubiquitin-like protein FUBI; structural genomics, | 93.77 | |
| 2crn_A | 64 | Ubash3A protein; compact three-helix bundle, struc | 93.76 | |
| 1v2y_A | 105 | 3300001G02RIK protein; hypothetical protein, ubiqu | 93.67 | |
| 1dv0_A | 47 | DNA repair protein HHR23A; helical bundle, DNA bin | 93.62 | |
| 3rt3_B | 159 | Ubiquitin-like protein ISG15; ubiquitin-like domai | 93.62 | |
| 3b1l_X | 76 | E3 ubiquitin-protein ligase parkin; proteasome, AL | 92.68 | |
| 1x1m_A | 107 | Ubiquitin-like protein SB132; structural genomics, | 93.42 | |
| 1wgg_A | 96 | Ubiquitin carboxyl-terminal hydrolase 14; ubiquiti | 93.36 | |
| 3rt3_B | 159 | Ubiquitin-like protein ISG15; ubiquitin-like domai | 93.29 | |
| 2dah_A | 54 | Ubiquilin-3; UBA domain, structural genomics, NPPS | 93.25 | |
| 2cpw_A | 64 | CBL-interacting protein STS-1 variant; ubiquitin a | 93.05 | |
| 2lxa_A | 87 | Ubiquitin-like protein MDY2; ubiquitin-like domain | 93.03 | |
| 1wz0_A | 104 | Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-li | 92.99 | |
| 2d07_B | 93 | Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Ho | 92.86 | |
| 2dag_A | 74 | Ubiquitin carboxyl-terminal hydrolase 5; isopeptid | 92.79 | |
| 3a4r_A | 79 | Nfatc2-interacting protein; ubiquitin fold, coiled | 92.61 | |
| 3m63_B | 101 | Ubiquitin domain-containing protein DSK2; armadill | 92.61 | |
| 1v5t_A | 90 | 8430435I17RIK protein; hypothetical protein, ubiqu | 92.53 | |
| 2gow_A | 125 | HCG-1 protein, ubiquitin-like protein 3; BC059385, | 92.53 | |
| 3q3f_A | 189 | Ribonuclease/ubiquitin chimeric protein; domain SW | 92.53 | |
| 2io0_B | 91 | Small ubiquitin-related modifier 2 precursor; SUMO | 92.44 | |
| 2cp9_A | 64 | EF-TS, EF-TSMT, elongation factor TS, mitochondria | 92.35 | |
| 1wm3_A | 72 | Ubiquitin-like protein SMT3B; ubiquitin fold, half | 92.3 | |
| 1tr8_A | 102 | Conserved protein (MTH177); chaperones, nascent po | 92.28 | |
| 2eke_C | 106 | Ubiquitin-like protein SMT3; UBC9, SUMO binding mo | 92.26 | |
| 2kdb_A | 99 | Homocysteine-responsive endoplasmic reticulum- res | 92.17 | |
| 2io1_B | 94 | Small ubiquitin-related modifier 3 precursor; SUMO | 92.08 | |
| 2k8h_A | 110 | Small ubiquitin protein; SUMO, post-translational | 92.05 | |
| 3u30_A | 172 | Ubiquitin, linear DI-ubiquitin; immune system; 2.4 | 92.03 | |
| 2kj6_A | 97 | Tubulin folding cofactor B; methods development, N | 92.01 | |
| 2jy5_A | 52 | Ubiquilin-1; UBA, alternative splicing, cytoplasm, | 91.92 | |
| 2knz_A | 53 | Ubiquilin-4; cytoplasm, endoplasmic reticulum, nuc | 91.83 | |
| 1whc_A | 64 | RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain | 91.76 | |
| 1wgn_A | 63 | UBAP1, ubiquitin associated protein; ubiquitin ass | 91.55 | |
| 3l0w_B | 169 | Monoubiquitinated proliferating cell nuclear antig | 91.41 | |
| 2kc2_A | 128 | Talin-1, F1; FERM, adhesion, cell membrane, cell p | 91.31 | |
| 1wf9_A | 107 | NPL4 family protein; beta-grAsp fold like domain, | 91.3 | |
| 2dzj_A | 88 | Synaptic glycoprotein SC2; ubiquitin-like fold, st | 91.05 | |
| 2ekk_A | 47 | UBA domain from E3 ubiquitin-protein ligase HUWE1; | 90.72 | |
| 3ai5_A | 307 | Yeast enhanced green fluorescent protein, ubiquit; | 90.38 | |
| 1oqy_A | 368 | HHR23A, UV excision repair protein RAD23 homolog A | 90.2 | |
| 1se9_A | 126 | Ubiquitin family; ubiquitin-like, cell-free, wheat | 90.07 | |
| 1v6e_A | 95 | Cytoskeleton-associated protein 1; tubulin-specifi | 89.77 | |
| 2daf_A | 118 | FLJ35834 protein; hypothetical protein FLJ35834, u | 89.61 | |
| 2bwb_A | 46 | Ubiquitin-like protein DSK2; UBA, signaling protei | 89.52 | |
| 3u5e_m | 128 | 60S ribosomal protein L40; translation, ribosome, | 89.32 | |
| 1wgh_A | 116 | Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fo | 88.99 | |
| 2lbc_A | 126 | Ubiquitin carboxyl-terminal hydrolase 13; tandem U | 88.87 | |
| 1vej_A | 74 | Riken cDNA 4931431F19; UBA domain, three helix bun | 88.41 | |
| 1wr1_B | 58 | Ubiquitin-like protein DSK2; UBA domain, UBA-ubiqu | 87.71 | |
| 4b6w_A | 86 | Tubulin-specific chaperone; CAP-Gly, ubiquitin-lik | 86.51 | |
| 1t0y_A | 122 | Tubulin folding cofactor B; ubiquitin-like, cytosk | 86.28 | |
| 3kyd_D | 115 | Small ubiquitin-related modifier 1; SUMO, thioeste | 85.65 | |
| 2daj_A | 91 | KIAA0977 protein, COBL-like 1; ubiquitin-like doma | 85.6 | |
| 3u5c_f | 152 | 40S ribosomal protein S31; translation, ribosome, | 85.44 | |
| 2dzm_A | 100 | FAS-associated factor 1; ubiquitin-like domain, HF | 82.36 | |
| 3pge_A | 200 | SUMO-modified proliferating cell nuclear antigen; | 82.18 | |
| 2fnj_B | 118 | Transcription elongation factor B polypeptide 2; b | 81.6 | |
| 3jyu_A | 231 | Ubiquitin carboxyl-terminal hydrolase; domain in u | 81.05 | |
| 2cwb_A | 108 | Chimera of immunoglobulin G binding protein G and | 80.49 | |
| 4a3p_A | 217 | Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {H | 80.4 | |
| 2dna_A | 67 | Unnamed protein product; ubiquitin associated doma | 80.18 |
| >2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2 | Back alignment and structure |
|---|
Probab=99.85 E-value=1.9e-21 Score=171.31 Aligned_cols=90 Identities=36% Similarity=0.569 Sum_probs=81.7
Q ss_pred HccCCCCCCCCCCCceEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhcCCCCCcCeEEEcCCCCcccCCCCcccchhhcC
Q 008174 483 EASLPQEPAPDDENAVTLLVRMPDGSRRGRRFLKSNKLQSLFDYIDVGRGIKAGTYRLVRPYPRRAFSDGESALTLNELG 562 (575)
Q Consensus 483 ~asLP~EP~~~~~~~vrIqIRLPDGsRi~RRF~~SDTLqdLydFVd~~~~~~p~~F~LvT~FPRR~ft~eD~skTLeElG 562 (575)
...||+||..+..+.|+|+||||||+|++|||+.+++|++||+||++. ++.+..|.|+++||||+|.. |.++||+|+|
T Consensus 9 ~~~lp~EP~~~~~~~~~IqiRlpdG~r~~rrF~~~~tl~~v~~fv~~~-~~~~~~f~L~t~fPrk~l~~-d~~~TL~e~g 86 (109)
T 2cr5_A 9 VPDLPEEPSETAEEVVTVALRCPNGRVLRRRFFKSWNSQVLLDWMMKV-GYHKSLYRLSTSFPRRALEV-EGGSSLEDIG 86 (109)
T ss_dssp CCCCCCCCCSSCSSEEEEEEECTTSCEEEEEEESSSBTHHHHHHHHHH-TCCTTTEEEECSSSCCBCCC-CSSCBHHHHT
T ss_pred cccCCCCCCCCCCCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEEeCCCCcCCCC-CCCCCHHHcC
Confidence 467999999888899999999999999999999999999999999964 56788999999999999964 6799999999
Q ss_pred CCCCceeEEEeeC
Q 008174 563 LTSKQEALFLELV 575 (575)
Q Consensus 563 L~PsqaaL~VE~I 575 (575)
|+|+ ++|+|+.+
T Consensus 87 L~p~-a~L~Ve~~ 98 (109)
T 2cr5_A 87 ITVD-TVLNVEEK 98 (109)
T ss_dssp CSSC-EEEEEEEC
T ss_pred CCCC-eEEEEEeC
Confidence 9985 99999863
|
| >2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A | Back alignment and structure |
|---|
| >3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A | Back alignment and structure |
|---|
| >1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2 | Back alignment and structure |
|---|
| >1s3s_G P47 protein; AAA ATPase, protein-protein complex, UBX domain, protein binding; HET: ADP; 2.90A {Rattus norvegicus} SCOP: d.15.1.2 PDB: 1i42_A 1jru_A | Back alignment and structure |
|---|
| >1v92_A NSFL1 cofactor P47; 3-helix bundle, recombination; NMR {Rattus norvegicus} SCOP: a.5.2.3 | Back alignment and structure |
|---|
| >2dal_A Protein KIAA0794; FAS associted factor 1, UBA-like domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2dzl_A Protein FAM100B; UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2dam_A ETEA protein; KIAA0887, UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >3e21_A HFAF1, FAS-associated factor 1; UBA, alternative splicing, apoptosis, nucleus, phosphoprotein; 1.73A {Homo sapiens} | Back alignment and structure |
|---|
| >2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus} | Back alignment and structure |
|---|
| >1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus} | Back alignment and structure |
|---|
| >1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1 | Back alignment and structure |
|---|
| >1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1 | Back alignment and structure |
|---|
| >2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >4gew_A 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosyl-DNA diesterase, hydrolase; 2.35A {Caenorhabditis elegans} PDB: 4f1i_A | Back alignment and structure |
|---|
| >1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A | Back alignment and structure |
|---|
| >1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ... | Back alignment and structure |
|---|
| >3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B | Back alignment and structure |
|---|
| >1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S | Back alignment and structure |
|---|
| >1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B | Back alignment and structure |
|---|
| >2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I | Back alignment and structure |
|---|
| >1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A | Back alignment and structure |
|---|
| >3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens} | Back alignment and structure |
|---|
| >4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A | Back alignment and structure |
|---|
| >2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 | Back alignment and structure |
|---|
| >4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A | Back alignment and structure |
|---|
| >1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C | Back alignment and structure |
|---|
| >1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B | Back alignment and structure |
|---|
| >2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} | Back alignment and structure |
|---|
| >1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1 | Back alignment and structure |
|---|
| >1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1 | Back alignment and structure |
|---|
| >2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A | Back alignment and structure |
|---|
| >4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens} | Back alignment and structure |
|---|
| >2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
| >1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3 | Back alignment and structure |
|---|
| >1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A | Back alignment and structure |
|---|
| >2l2d_A OTU domain-containing protein 7A; UBA fold, structural genomics, PSI-biology, protein structur initiative, northeast structural genomics consortium; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana} | Back alignment and structure |
|---|
| >3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B | Back alignment and structure |
|---|
| >4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B | Back alignment and structure |
|---|
| >2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana} | Back alignment and structure |
|---|
| >2dkl_A Trinucleotide repeat containing 6C protein; TNRC6C, KIAA1582 protein, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1 | Back alignment and structure |
|---|
| >1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >2jp7_A MRNA export factor MEX67; solution MEX67, UBA, translation; NMR {Saccharomyces cerevisiae} PDB: 2khh_A | Back alignment and structure |
|---|
| >1vek_A UBP14, ubiquitin-specific protease 14, putative; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1 | Back alignment and structure |
|---|
| >1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1 | Back alignment and structure |
|---|
| >2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1 | Back alignment and structure |
|---|
| >3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B | Back alignment and structure |
|---|
| >3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens} | Back alignment and structure |
|---|
| >2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster} | Back alignment and structure |
|---|
| >1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1 | Back alignment and structure |
|---|
| >4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A | Back alignment and structure |
|---|
| >1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >1q0v_A Hydrophilic protein; has cysteine rich putative zinc finger esential for function;...; stable, non-interacting alpha-helices; NMR {Saccharomyces cerevisiae} SCOP: j.105.1.1 PDB: 1q0w_A | Back alignment and structure |
|---|
| >3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A | Back alignment and structure |
|---|
| >1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2crn_A Ubash3A protein; compact three-helix bundle, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1 | Back alignment and structure |
|---|
| >1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >1dv0_A DNA repair protein HHR23A; helical bundle, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 1f4i_A | Back alignment and structure |
|---|
| >3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A | Back alignment and structure |
|---|
| >3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A | Back alignment and structure |
|---|
| >1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A | Back alignment and structure |
|---|
| >2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1 | Back alignment and structure |
|---|
| >2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1 | Back alignment and structure |
|---|
| >2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A | Back alignment and structure |
|---|
| >2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A | Back alignment and structure |
|---|
| >3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A | Back alignment and structure |
|---|
| >2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens} | Back alignment and structure |
|---|
| >2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >2cp9_A EF-TS, EF-TSMT, elongation factor TS, mitochondrial; UBA, structural genomics, human, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.2 | Back alignment and structure |
|---|
| >1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B | Back alignment and structure |
|---|
| >1tr8_A Conserved protein (MTH177); chaperones, nascent polypeptide-associated complex, ribosome domain, ubiquitin, chaperone; 2.27A {Methanothermobacter marburgensis} | Back alignment and structure |
|---|
| >2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei} | Back alignment and structure |
|---|
| >3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens} | Back alignment and structure |
|---|
| >2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} | Back alignment and structure |
|---|
| >2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B | Back alignment and structure |
|---|
| >2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus} | Back alignment and structure |
|---|
| >1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1 | Back alignment and structure |
|---|
| >1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1 | Back alignment and structure |
|---|
| >3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B | Back alignment and structure |
|---|
| >2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus} | Back alignment and structure |
|---|
| >1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B* | Back alignment and structure |
|---|
| >1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A | Back alignment and structure |
|---|
| >1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A | Back alignment and structure |
|---|
| >3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p | Back alignment and structure |
|---|
| >1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1 | Back alignment and structure |
|---|
| >1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 | Back alignment and structure |
|---|
| >4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927} | Back alignment and structure |
|---|
| >1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >2daj_A KIAA0977 protein, COBL-like 1; ubiquitin-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f | Back alignment and structure |
|---|
| >2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A | Back alignment and structure |
|---|
| >3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus} | Back alignment and structure |
|---|
| >2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A | Back alignment and structure |
|---|
| >4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A | Back alignment and structure |
|---|
| >2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1 | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 575 | ||||
| d2cr5a1 | 96 | d.15.1.2 (A:8-103) UBX domain-containing protein 6 | 3e-15 | |
| d1h8ca_ | 82 | d.15.1.2 (A:) Fas-associated factor 1, Faf1 {Human | 8e-15 | |
| d1i42a_ | 89 | d.15.1.2 (A:) p47 {Rat (Rattus norvegicus) [TaxId: | 2e-12 | |
| d1v92a_ | 46 | a.5.2.3 (A:) NSFL1 (p97 ATPase) cofactor p47, UBA- | 3e-12 | |
| d1wj4a_ | 124 | d.15.1.2 (A:) Hypothetical protein KIAA0794 {Human | 3e-11 | |
| d1sa0e_ | 138 | a.137.10.1 (E:) Stathmin 4 {Rat (Rattus norvegicus | 0.004 |
| >d2cr5a1 d.15.1.2 (A:8-103) UBX domain-containing protein 6 (Reproduction 8) {Mouse (Mus musculus) [TaxId: 10090]} Length = 96 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-Grasp (ubiquitin-like) superfamily: Ubiquitin-like family: UBX domain domain: UBX domain-containing protein 6 (Reproduction 8) species: Mouse (Mus musculus) [TaxId: 10090]
Score = 69.2 bits (169), Expect = 3e-15
Identities = 29/90 (32%), Positives = 43/90 (47%), Gaps = 3/90 (3%)
Query: 484 ASLPQEPAPDDENAVTLLVRMPDGSRRGRRFLKSNKLQSLFDYIDVGRGIKAGTYRLVRP 543
LP+EP+ E VT+ +R P+G RRF KS Q L D++ K+
Sbjct: 3 PDLPEEPSETAEEVVTVALRCPNGRVLRRRFFKSWNSQVLLDWMMKVGYHKSLYRLS-TS 61
Query: 544 YPRRAFSDGESALTLNELGLTSKQEALFLE 573
+PRRA E +L ++G+T L +E
Sbjct: 62 FPRRALEV-EGGSSLEDIGIT-VDTVLNVE 89
|
| >d1h8ca_ d.15.1.2 (A:) Fas-associated factor 1, Faf1 {Human (Homo sapiens) [TaxId: 9606]} Length = 82 | Back information, alignment and structure |
|---|
| >d1i42a_ d.15.1.2 (A:) p47 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 89 | Back information, alignment and structure |
|---|
| >d1v92a_ a.5.2.3 (A:) NSFL1 (p97 ATPase) cofactor p47, UBA-like domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 46 | Back information, alignment and structure |
|---|
| >d1wj4a_ d.15.1.2 (A:) Hypothetical protein KIAA0794 {Human (Homo sapiens) [TaxId: 9606]} Length = 124 | Back information, alignment and structure |
|---|
| >d1sa0e_ a.137.10.1 (E:) Stathmin 4 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 138 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 575 | |||
| d2cr5a1 | 96 | UBX domain-containing protein 6 (Reproduction 8) { | 99.83 | |
| d1h8ca_ | 82 | Fas-associated factor 1, Faf1 {Human (Homo sapiens | 99.8 | |
| d1wj4a_ | 124 | Hypothetical protein KIAA0794 {Human (Homo sapiens | 99.77 | |
| d1i42a_ | 89 | p47 {Rat (Rattus norvegicus) [TaxId: 10116]} | 99.7 | |
| d1v92a_ | 46 | NSFL1 (p97 ATPase) cofactor p47, UBA-like domain { | 99.41 | |
| d1s3si_ | 50 | p47 {Rat (Rattus norvegicus) [TaxId: 10116]} | 98.13 | |
| d2g3qa1 | 43 | Endocytic protein Ede1, YBL047C {Saccharomyces cer | 96.97 | |
| d1wgha_ | 116 | Ubiquitin-like protein 3, Ubl3 {Mouse (Mus musculu | 96.52 | |
| d1wh3a_ | 87 | 2'-5'-oligoadenylate synthetase-like protein, OASL | 96.21 | |
| d1z2ma2 | 76 | Interferon-induced 15 kDa protein {Human (Homo sap | 96.13 | |
| d1ttna1 | 80 | Dendritic cell-derived ubiquitin-like protein {Hum | 96.1 | |
| d1bt0a_ | 73 | Rub1 {Mouse-ear cress (Arabidopsis thaliana) [TaxI | 96.0 | |
| d1z2ma1 | 76 | Interferon-induced 15 kDa protein {Human (Homo sap | 96.0 | |
| d1wjna_ | 97 | Tubulin-folding protein TbcE {Mouse (Mus musculus) | 95.97 | |
| d1uh6a_ | 100 | Ubiquitin-like protein 5, ubl5 {Mouse (Mus musculu | 95.81 | |
| d1yqba1 | 84 | Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]} | 95.46 | |
| d2zeqa1 | 78 | Ubiquitin-like domain of parkin {Mouse (Mus muscul | 95.44 | |
| d1oaia_ | 59 | FG-binding, C-terminal domain of TAP {Human (Homo | 95.41 | |
| d1wjua_ | 100 | NEDD8 ultimate buster-1, NUB1 {Human (Homo sapiens | 95.41 | |
| d1ogwa_ | 76 | Ubiquitin {Human (Homo sapiens) [TaxId: 9606]} | 95.17 | |
| d1oqya4 | 77 | Ubiquitin-like domain of Rad23 homolog A (Hhr23a) | 95.05 | |
| d1j8ca_ | 103 | Ubiquitin-like N-terminal domain of PLIC-2 {Human | 94.93 | |
| d1se9a_ | 101 | Hypothetical protein At3g01050 {Thale cress (Arabi | 94.91 | |
| d1m94a_ | 73 | Ubiquitin-like modifier protein hub1 {Baker's yeas | 94.74 | |
| d1v86a_ | 95 | hypothetical D7wsu128e protein {Mouse (Mus musculu | 94.61 | |
| d1wj7a1 | 91 | Ubiquitin-associated protein 2-like Ubap2l {Mouse | 94.35 | |
| d1we6a_ | 111 | Splicing factor 3 subunit 1, C-terminal domain {Th | 94.31 | |
| d1uela_ | 95 | Ubiquitin-like domain of Rad23 homolog B (Hhr23B) | 94.25 | |
| d2bwfa1 | 73 | DSK2 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 94.08 | |
| d1wx8a1 | 83 | 4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090] | 93.95 | |
| d2uyzb1 | 77 | SUMO-1 (smt3 homologue) {Human (Homo sapiens) [Tax | 93.75 | |
| d1vg5a_ | 73 | Rhomboid family protein At3g58460 {Thale cress (Ar | 93.24 | |
| d1wiaa_ | 95 | Ubiquitin-like protein bab25500 (2010008E23Rik) {M | 93.24 | |
| d2faza1 | 76 | Ubiquitin-like PHD and RING finger domain-containi | 93.02 | |
| d1wjia_ | 63 | Tudor domain containing protein 3, TDRD3 {Human (H | 92.99 | |
| d1wgna_ | 63 | Ubiquitin-associated protein 1, UBAP1 {Human (Homo | 92.86 | |
| d1wgga_ | 96 | Ubiquitin carboxyl-terminal hydrolase 14 {Mouse (M | 92.64 | |
| d1wx9a1 | 73 | Large proline-rich protein BAT3 {Human (Homo sapie | 92.35 | |
| d1v5ta_ | 90 | 8430435i17rik protein {Mouse (Mus musculus) [TaxId | 92.31 | |
| d1zkha1 | 86 | Splicing factor 3 subunit 1, C-terminal domain {Hu | 92.29 | |
| d1xb2b1 | 56 | Elongation factor Ts (EF-Ts), N-terminal domain {C | 92.28 | |
| d1aipc1 | 52 | Elongation factor Ts (EF-Ts), N-terminal domain {T | 92.03 | |
| d1wy8a1 | 76 | Ubiquitin-like PHD and RING finger domain-containi | 91.12 | |
| d1wxva1 | 81 | Bag-family molecular chaperone regulator-1 {Human | 90.59 | |
| d1wiva_ | 73 | Ubiquitin isopeptidase T {Thale cress (Arabidopsis | 90.52 | |
| d1euvb_ | 79 | SUMO-1 (smt3 homologue) {Baker's yeast (Saccharomy | 90.45 | |
| d1efub3 | 54 | Elongation factor Ts (EF-Ts), N-terminal domain {E | 90.44 | |
| d1oqya1 | 41 | DNA repair protein Hhr23a {Human (Homo sapiens) [T | 90.39 | |
| d1v5oa_ | 102 | 1700011n24rik protein {Mouse (Mus musculus) [TaxId | 88.56 | |
| d1veka_ | 84 | Ubiquitin isopeptidase T {Thale cress (Arabidopsis | 87.65 | |
| d1v2ya_ | 105 | Ubiquitin-like protein 3300001g02rik {Mouse (Mus m | 85.31 | |
| d1wm3a_ | 72 | SUMO-2 {Human (Homo sapiens) [TaxId: 9606]} | 85.16 | |
| d1v6ea_ | 95 | Ubiquitin-like domain of tubulin folding cofactor | 84.86 | |
| d1wgda_ | 93 | Homocysteine-responsive endoplasmic reticulum-resi | 84.78 | |
| d1t0ya_ | 90 | Ubiquitin-like domain of tubulin folding cofactor | 84.36 | |
| d2crna1 | 51 | Suppressor of T-cell receptor signaling 2 (STS-2) | 81.95 |
| >d2cr5a1 d.15.1.2 (A:8-103) UBX domain-containing protein 6 (Reproduction 8) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a+b) fold: beta-Grasp (ubiquitin-like) superfamily: Ubiquitin-like family: UBX domain domain: UBX domain-containing protein 6 (Reproduction 8) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.83 E-value=7e-21 Score=161.13 Aligned_cols=88 Identities=36% Similarity=0.596 Sum_probs=80.2
Q ss_pred ccCCCCCCCCCCCceEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhcCCCCCcCeEEEcCCCCcccCCCCcccchhhcCC
Q 008174 484 ASLPQEPAPDDENAVTLLVRMPDGSRRGRRFLKSNKLQSLFDYIDVGRGIKAGTYRLVRPYPRRAFSDGESALTLNELGL 563 (575)
Q Consensus 484 asLP~EP~~~~~~~vrIqIRLPDGsRi~RRF~~SDTLqdLydFVd~~~~~~p~~F~LvT~FPRR~ft~eD~skTLeElGL 563 (575)
..||+||..+++++|+|+||||||+|++|||+++++|++||+||.++ +.....|.|+++|||+.|.. |.++||+|+||
T Consensus 3 ~~lp~EP~~~~~~~~~i~iRlPdG~r~~r~F~~~dtl~~l~~fv~~~-~~~~~~f~l~~~~Pr~~~~~-d~~~TL~e~gl 80 (96)
T d2cr5a1 3 PDLPEEPSETAEEVVTVALRCPNGRVLRRRFFKSWNSQVLLDWMMKV-GYHKSLYRLSTSFPRRALEV-EGGSSLEDIGI 80 (96)
T ss_dssp CCCCCCCCSSCSSEEEEEEECTTSCEEEEEEESSSBTHHHHHHHHHH-TCCTTTEEEECSSSCCBCCC-CSSCBHHHHTC
T ss_pred CCCCCCCCCCCCCeEEEEEECCCCCEEEEEECCcccHHHHHHHHHHh-ccCcccceeecCCCceecCc-cCCCcHHHCCC
Confidence 36899999988999999999999999999999999999999999865 56678999999999999975 56899999999
Q ss_pred CCCceeEEEee
Q 008174 564 TSKQEALFLEL 574 (575)
Q Consensus 564 ~PsqaaL~VE~ 574 (575)
+|+ ++|+|+.
T Consensus 81 ~p~-~~L~v~~ 90 (96)
T d2cr5a1 81 TVD-TVLNVEE 90 (96)
T ss_dssp SSC-EEEEEEE
T ss_pred CCC-CEEEEec
Confidence 985 9999985
|
| >d1h8ca_ d.15.1.2 (A:) Fas-associated factor 1, Faf1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1wj4a_ d.15.1.2 (A:) Hypothetical protein KIAA0794 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1i42a_ d.15.1.2 (A:) p47 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
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| >d1v92a_ a.5.2.3 (A:) NSFL1 (p97 ATPase) cofactor p47, UBA-like domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
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| >d1s3si_ d.15.1.2 (I:) p47 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
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| >d2g3qa1 a.5.2.1 (A:1339-1381) Endocytic protein Ede1, YBL047C {Saccharomyces cerevisiae [TaxId: 4932]} | Back information, alignment and structure |
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| >d1wgha_ d.15.1.1 (A:) Ubiquitin-like protein 3, Ubl3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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| >d1wh3a_ d.15.1.1 (A:) 2'-5'-oligoadenylate synthetase-like protein, OASL {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1z2ma2 d.15.1.1 (A:79-154) Interferon-induced 15 kDa protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1ttna1 d.15.1.1 (A:21-100) Dendritic cell-derived ubiquitin-like protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1bt0a_ d.15.1.1 (A:) Rub1 {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
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| >d1z2ma1 d.15.1.1 (A:3-78) Interferon-induced 15 kDa protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1wjna_ d.15.1.1 (A:) Tubulin-folding protein TbcE {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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| >d1uh6a_ d.15.1.1 (A:) Ubiquitin-like protein 5, ubl5 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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| >d1yqba1 d.15.1.1 (A:15-98) Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d2zeqa1 d.15.1.1 (A:1-78) Ubiquitin-like domain of parkin {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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| >d1oaia_ a.5.2.3 (A:) FG-binding, C-terminal domain of TAP {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1wjua_ d.15.1.1 (A:) NEDD8 ultimate buster-1, NUB1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1ogwa_ d.15.1.1 (A:) Ubiquitin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1oqya4 d.15.1.1 (A:1-77) Ubiquitin-like domain of Rad23 homolog A (Hhr23a) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1j8ca_ d.15.1.1 (A:) Ubiquitin-like N-terminal domain of PLIC-2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1se9a_ d.15.1.1 (A:) Hypothetical protein At3g01050 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
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| >d1m94a_ d.15.1.1 (A:) Ubiquitin-like modifier protein hub1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
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| >d1v86a_ d.15.1.1 (A:) hypothetical D7wsu128e protein {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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| >d1wj7a1 a.5.2.1 (A:8-98) Ubiquitin-associated protein 2-like Ubap2l {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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| >d1we6a_ d.15.1.1 (A:) Splicing factor 3 subunit 1, C-terminal domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
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| >d1uela_ d.15.1.1 (A:) Ubiquitin-like domain of Rad23 homolog B (Hhr23B) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d2bwfa1 d.15.1.1 (A:2-74) DSK2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
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| >d1wx8a1 d.15.1.1 (A:8-90) 4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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| >d2uyzb1 d.15.1.1 (B:20-96) SUMO-1 (smt3 homologue) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1vg5a_ a.5.2.1 (A:) Rhomboid family protein At3g58460 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
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| >d1wiaa_ d.15.1.1 (A:) Ubiquitin-like protein bab25500 (2010008E23Rik) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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| >d2faza1 d.15.1.1 (A:1-76) Ubiquitin-like PHD and RING finger domain-containing protein 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1wjia_ a.5.2.1 (A:) Tudor domain containing protein 3, TDRD3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1wgna_ a.5.2.1 (A:) Ubiquitin-associated protein 1, UBAP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1wgga_ d.15.1.1 (A:) Ubiquitin carboxyl-terminal hydrolase 14 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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| >d1wx9a1 d.15.1.1 (A:8-80) Large proline-rich protein BAT3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1v5ta_ d.15.1.1 (A:) 8430435i17rik protein {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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| >d1zkha1 d.15.1.1 (A:1-86) Splicing factor 3 subunit 1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1xb2b1 a.5.2.2 (B:56-111) Elongation factor Ts (EF-Ts), N-terminal domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} | Back information, alignment and structure |
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| >d1aipc1 a.5.2.2 (C:2-53) Elongation factor Ts (EF-Ts), N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
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| >d1wy8a1 d.15.1.1 (A:8-83) Ubiquitin-like PHD and RING finger domain-containing protein 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1wxva1 d.15.1.1 (A:7-87) Bag-family molecular chaperone regulator-1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1wiva_ a.5.2.1 (A:) Ubiquitin isopeptidase T {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
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| >d1euvb_ d.15.1.1 (B:) SUMO-1 (smt3 homologue) {Baker's yeast (Saccharomyces cerevisiae), smt3 [TaxId: 4932]} | Back information, alignment and structure |
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| >d1efub3 a.5.2.2 (B:1-54) Elongation factor Ts (EF-Ts), N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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| >d1oqya1 a.5.2.1 (A:160-200) DNA repair protein Hhr23a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1v5oa_ d.15.1.1 (A:) 1700011n24rik protein {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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| >d1veka_ a.5.2.1 (A:) Ubiquitin isopeptidase T {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
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| >d1v2ya_ d.15.1.1 (A:) Ubiquitin-like protein 3300001g02rik {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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| >d1wm3a_ d.15.1.1 (A:) SUMO-2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1v6ea_ d.15.1.1 (A:) Ubiquitin-like domain of tubulin folding cofactor B {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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| >d1wgda_ d.15.1.1 (A:) Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 1 protein, HERPUD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1t0ya_ d.15.1.1 (A:) Ubiquitin-like domain of tubulin folding cofactor B {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
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| >d2crna1 a.5.2.1 (A:8-58) Suppressor of T-cell receptor signaling 2 (STS-2) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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