Citrus Sinensis ID: 008192

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570----
Protein Sequence
MGSVSSDDDVSDQQSERCGSYSLSADVSESESCSSSSFSGRRFDAEGASSSMTSSPRPVARGFGFPVPVMVPVIGGKDVVVWDEKPEKSDTDLSEVEMMKERFAKLLLGEDMSGGGKGVCTALAISNAITNLSATVFGELWRLEPLAPQKKAMWRREMQWLLCVSDSIVELVPSIQQFPGGGTYEVMATRPRSDLYMNLPALKKLDAMLIGMLDGFCETEFWYVDRGIVVGDGGDRDAFSSMVPSGRPSVRHEEKWWLPCPKVPQNGLSEDVRKKLQQCRDCTNQILKAAMAINSSVLAEMEIPAAYLETLPKNGKACLGDIIYRYITADQFSPECLLDCLDLSSEHHTLEVANRIEAAVHVWKQKDQRKHLSHSKSRRSSWGGKVKGLVADSEKNHSLAHRAETLLHSLRLRFPGLPQTALDMNKIQYNKDVGQSILESYSRVMESLAFNIMARIDDVLFVDDATKRCAAAESISLFSRGGLSGLPIQKRMSPSPFSIQHTPYASPFGTPTFCSSTPVGGSPGRVPTAQKRSSLKEAPPRKLEKPCPAEFERVWSYAGNLSSRRVSGDAPERD
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHcccHHHHHHHccccccccccHHHHHHHHHHccEEEEEccEEEEEEccccccccccEEEEEEcccccccccccHHHHHHHHHHHHHHHcccccEEEEEEccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHccccHHHHHHHccccccccHHHHHHHHHccccccHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccccccccHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHcHHcHEEEEcccccccccccEEEEEccccccHHHEcHHHHHHHHHHHHHHHHHccccEEEEEEccccccccccccccccccccccccccccccEEccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHccccccccHHHHHHHHHccccccHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHccHcccHHHHHHHHHHHHHHHHHHHHHcccccccHEcHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEccccccccccccccccc
Coil and Loop (DISEMBL)
mgsvssdddvsdqqsercgsyslsadvsesescssssfsgrrfdaegasssmtssprpvargfgfpvpvmvpviggkdvvvwdekpeksdtdLSEVEMMKERFAKLLlgedmsgggkGVCTALAISNAITNLSATVFGelwrleplapqKKAMWRREMQWLLCVSDSIVELvpsiqqfpgggtyevmatrprsdlymnlpaLKKLDAMLIGMLDGfcetefwyvdrgivvgdggdrdafssmvpsgrpsvrheekwwlpcpkvpqnglsEDVRKKLQQCRDCTNQILKAAMAINSSVLAEMEIPAAYLEtlpkngkacLGDIIYRYitadqfspeclldcldlssehhtLEVANRIEAAVHVWKQkdqrkhlshsksrrsswggkvkgLVADSEKNHSLAHRAETLLHSLrlrfpglpqtaldmnkiqynKDVGQSILESYSRVMESLAFNIMARIDDVLFVDDATKRCAAAESISLfsrgglsglpiqkrmspspfsiqhtpyaspfgtptfcsstpvggspgrvptaqkrsslkeapprklekpcpaefERVWSYagnlssrrvsgdaperd
Flexible Loop (DISEMBL)
mgsvssdddvsdqqseRCGSyslsadvsesescssssfsgrrfdaegasssmtssprpvARGFGFPVPVMVPVIGGkdvvvwdekpeksdtdlsevEMMKERFAKLLLGEDMSGGGKGVCTALAISNAITNLSATVFGELWRLEPLAPQKKAMWRREMQWLLCVSDSIVELVPsiqqfpgggtYEVMATRPRSDLYMNLPALKKLDAMLIGMLDGFCETEFWYVDRGIVVGDGGDRDAFSSMVpsgrpsvrheekwwlpcpkvpqnGLSEDVRKKLQQCRDCTNQILKAAMAINSSVLAEMEIPAAYLETLPKNGKACLGDIIYRYITADQFSPECLLDCLDLSSEHHTLEVANRIEAAVHVWkqkdqrkhlshsksrrsswggkvKGLVADSEKNHSLAHRAETLLHSLRLRFPGLPQTALDMNKIQYNKDVGQSILESYSRVMESLAFNIMARIDDVLFVDDATKRCAAAesislfsrgglsglpIQKRMSPSPFSIQHTPYASPFGTPTFCSSTPVGGSPGRVPTAqkrsslkeapprklekpcpAEFERVWsyagnlssrrvsgdaperd
Low Complexity Region (SEG)
MGsvssdddvsdqqsERCGsyslsadvsesescssssfsGRRFDAEGASSSMTSSPRPVARgfgfpvpvmvpviggKDVVVWDEKPEKSDTDLSEVEMMKERFAKLLLGEDMSGGGKGVCTALAISNAITNLSATVFGELWRLEPLAPQKKAMWRREMQWLLCVSDSIVELVPSIQQFPGGGTYEVMATRPRSDLYMNLPALKKLDAMLIGMLDGFCETEFWYvdrgivvgdggdrdAFSSMVPSGRPSVRHEEKWWLPCPKVPQNGLSEDVRKKLQQCRDCTNQILKAAMAINSSVLAEMEIPAAYLETLPKNGKACLGDIIYRYITADQFSPECLLDCLDLSSEHHTLEVANRIEAAVHVWKQKDQrkhlshsksrrssWGGKVKGLVADSEKNHSLAHRAETLLHSLRLRFPGLPQTALDMNKIQYNKDVGQSILESYSRVMESLAFNIMARIDDVLFVDDATKRCAAAESISLFSRGGLSGLPIQKRMSPSPFSIQHTPYASPFGTPTFCSSTPVGGSPGRVPTAQKRSSLKEAPPRKLEKPCPAEFERVWSYAGNLSSRRVSGDAPERD
Disordered region (IsUnstruct)
************************************************************RGFGFPVPVMVPVIGGKDVVVWD******************RFAKLLLGEDMSGGGKGVCTALAISNAITNLSATVFGELWRLEPLAPQKKAMWRREMQWLLCVSDSIVELVPSIQQFPGGGTYEVMATRPRSDLYMNLPALKKLDAMLIGMLDGFCETEFWYVDRGIVVGDGG*******************EKWWLPCPKVPQNGLSEDVRKKLQQCRDCTNQILKAAMAINSSVLAEMEIPAAYLETLPKNGKACLGDIIYRYITADQFSPECLLDCLDLSSEHHTLEVANRIEAAVHVWK**************************************AETLLHSLRLRFPGLPQTALDMNKIQYNKDVGQSILESYSRVMESLAFNIMARIDDVLFVDDATKRCAAAESISLFSRGGL*********************************************************************RVWSY*****************
Disordered Region (DISOPRED)
**********************************************************************************************************************VCTALAISNAITNLSATVFGELWRLEPLAPQ**AMWRREMQWLLCVSDSIVELVPSIQQFPGGGTYEVMATRPRSDLYMNLPALKKLDAMLIGMLDGFCETEFWYVDRGI**************************KWWLPCPKVPQNGLSEDVRKKLQQCRDCTNQILKAAMAINSSVLAEMEIPAAYLETLPKNGKACLGDIIYRYITADQFSPECLLDCLDLSSEHHTLEVANRIEAAVHVW***************************ADSEKNHSLAHRAETLLHSLRLRFPGLPQTALDMNKIQYNKDVGQSILESYSRVMESLAFNIMARIDDVLFVDDAT***********************************************************************************EFERVWSYA****************
Disordered Region (DISEMBL)
********************************************************RPVARGFGFPVPVMVPVIGGKDVVVWDEKPEKSDTDLSEVEMMKERFAKLLLGEDMSGGGKGVCTALAISNAITNLSATVFGELWRLEPLAPQKKAMWRREMQWLLCVSDSIVELVPSIQQFPGGGTYEVMATRPRSDLYMNLPALKKLDAMLIGMLDGFCETEFWYVDRGIVVGDGGDRDAFSSM**********EEKWWLPCPKVPQNGLSEDVRKKLQQCRDCTNQILKAAMAINSSVLAEMEIPAAYLETLPKNGKACLGDIIYRYITADQFSPECLLDCLDLSSEHHTLEVANRIEAAVHV**********************KVKGLVADSEKNHSLAHRAETLLHSLRLRFPGLPQTALDMNKIQYNKDVGQSILESYSRVMESLAFNIMARIDDVLFVDDATKRCAAAESISLFSRGGLSGLPIQKRMSPSPFSIQHTPYASPFGTPTFCSST*****************************CPAEFERVWSYAGNL*************
Disordered Region (DISPRO)
****************************************************************FPVPVMV*****KDVVVWDE*****DTDLSEVEMMKERFAKLLLGEDMSGGGKGVCTALAISNAITNLSATVFGELWRLEPLAPQKKAMWRREMQWLLCVSDSIVELVPSIQQFPGGGTYEVMATRPRSDLYMNLPALKKLDAMLIGMLDGFCETEFWYVDRG*************************EEKWWLPCPKVPQNGLSEDVRKKLQQCRDCTNQILKAAMAINSSVLAEMEIPAAYLETLPKNGKACLGDIIYRYITADQFSPECLLDCLDLSSEHHTLEVANRIEAAVHVWKQKDQ******************KGLVADSEKNHSLAHRAETLLHSLRLRFPGLPQTALDMNKIQYNKDVGQSILESYSRVMESLAFNIMARIDDVLFVDDATKR**************************************************************************LEKPCPAEFERVWSYAGNL*************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGSVSSDDDVSDQQSERCGSYSLSADVSESESCSSSSFSGRRFDAEGASSSMTSSPRPVARGFGFPVPVMVPVIGGKDVVVWDEKPEKSDTDLSEVEMMKERFAKLLLGEDMSGGGKGVCTALAISNAITNLSATVFGELWRLEPLAPQKKAMWRREMQWLLCVSDSIVELVPSIQQFPGGGTYEVMATRPRSDLYMNLPALKKLDAMLIGMLDGFCETEFWYVDRGIVVGDGGDRDAFSSMVPSGRPSVRHEEKWWLPCPKVPQNGLSEDVRKKLQQCRDCTNQILKAAMAINSSVLAEMEIPAAYLETLPKNGKACLGDIIYRYITADQFSPECLLDCLDLSSEHHTLEVANRIEAAVHVWKQKDQRKHLSHSKSRRSSWGGKVKGLVADSEKNHSLAHRAETLLHSLRLRFPGLPQTALDMNKIQYNKDVGQSILESYSRVMESLAFNIMARIDDVLFVDDATKRCAAAESISLFSRGGLSGLPIQKRMSPSPFSIQHTPYASPFGTPTFCSSTPVGGSPGRVPTAQKRSSLKEAPPRKLEKPCPAEFERVWSYAGNLSSRRVSGDAPERD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	574	2.2.26 [Sep-21-2011]
Q93ZY2	548	Rop guanine nucleotide ex	yes	no	0.951	0.996	0.717	0.0
Q9LQ89	485	Rop guanine nucleotide ex	no	no	0.628	0.744	0.556	1e-110
Q9LV40	523	Rho guanine nucleotide ex	no	no	0.637	0.699	0.517	1e-109

>sp|Q93ZY2|ROGF1_ARATH Rop guanine nucleotide exchange factor 1 OS=Arabidopsis thaliana GN=ROPGEF1 PE=1 SV=2

 Score =  779 bits (2012), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 413/576 (71%), Positives = 466/576 (80%), Gaps = 30/576 (5%)

Query: 1   MGSVSSDDDVSDQQSERCGSYSLSADVSESESCSSSSFSGRRFDAEGASSSMTSSPRPVA 60
           MGS+SS++D  +  SERCGSYS SAD+SESES SS S    RFD EGASSS+ SSPR VA
Sbjct: 1   MGSLSSEED-DEVSSERCGSYSPSADISESESSSSFSC--HRFDGEGASSSIPSSPRVVA 57

Query: 61  -RGFGFPVPVMVPVIGGKDVVVWDEKPEKSDTDLSEVEMMKERFAKLLLGEDMSGGGKGV 119
            RGF FP PVM+PVIGGKDVV WD+K  + D DLSE+EMMKERFAKLLLGEDMSGGGKGV
Sbjct: 58  GRGFYFPAPVMLPVIGGKDVV-WDDK--QPDNDLSEIEMMKERFAKLLLGEDMSGGGKGV 114

Query: 120 CTALAISNAITNLSATVFGELWRLEPLAPQKKAMWRREMQWLLCVSDSIVELVPSIQQFP 179
           CTALAISNAITNLSATVFGELWRLEPLAPQKKAMWRRE++WLLCVSDSIVEL+PSIQQFP
Sbjct: 115 CTALAISNAITNLSATVFGELWRLEPLAPQKKAMWRRELEWLLCVSDSIVELIPSIQQFP 174

Query: 180 GGGTYEVMATRPRSDLYMNLPALKKLDAMLIGMLDGFCETEFWYVDRGIVVGDGGDRDAF 239
           GGGTYE+M TRPRSDLY NLPALKKLDAMLI MLD F +TEFWY DRGIV+GD  D+D++
Sbjct: 175 GGGTYEIMETRPRSDLYANLPALKKLDAMLIDMLDAFSDTEFWYTDRGIVLGDC-DKDSY 233

Query: 240 SSMVPSGRPSVRHEEKWWLPCPKVPQNGLSEDVRKKLQQCRDCTNQILKAAMAINSSVLA 299
           +S       SVR E+KWWLPCPKVP NGLSE+ RKKLQQCRD  NQILKAA+AINS VLA
Sbjct: 234 NSPA-----SVRQEDKWWLPCPKVPPNGLSEEARKKLQQCRDFANQILKAALAINSGVLA 288

Query: 300 EMEIPAAYLETLPKNGKACLGDIIYRYITADQFSPECLLDCLDLSSEHHTLEVANRIEAA 359
           EMEIP  YLETLPK+GK CLG+IIY+Y+TA++FSPECLLDCLDLSSEH TLE+ANRIEAA
Sbjct: 289 EMEIPDPYLETLPKSGKECLGEIIYQYLTANKFSPECLLDCLDLSSEHQTLEIANRIEAA 348

Query: 360 VHVWKQKDQRKHLSHSKSRRSSWGGKVKGLVADSEKNHSLAHRAETLLHSLRLRFPGLPQ 419
           VHVW+QK+ R+H   +K + SSWGGKVKGLV D+E+N  L  RAETLL SLR+RFPGLPQ
Sbjct: 349 VHVWRQKNGRRHKKQAKLKLSSWGGKVKGLVNDNERNDFLVQRAETLLQSLRIRFPGLPQ 408

Query: 420 TALDMNKIQYNKDVGQSILESYSRVMESLAFNIMARIDDVLFVDDATKR-CAAAESISLF 478
           T LDMNKIQYNKDVGQSILESYSRVMES+AFNI ARIDDVL+VDDA +R  +  ES+SLF
Sbjct: 409 TTLDMNKIQYNKDVGQSILESYSRVMESMAFNITARIDDVLYVDDAMRRSISVTESLSLF 468

Query: 479 SRGGLSGLPIQKRMSPSPFSIQHTPYASPFGTPTFCSSTPVGGSPGRVPTAQKRSSLKEA 538
           S   ++GL  QK      FS+Q +P+ SPF TP    ++    SP R P      S+K  
Sbjct: 469 S---INGLNPQK-----AFSVQSSPHGSPFATPALSVAS---RSPRRAPPLY---SVKRN 514

Query: 539 PPRKLEKPCPAEFERVWSYAGNLSSRRVSGDAPERD 574
             R  EK    E E+ WSYAGNLSSRRV+G  PERD
Sbjct: 515 GTR--EKGIVGETEKAWSYAGNLSSRRVTGVTPERD 548

Acts as an activator of Rop GTPases by exchanging GDP with GTP. Stimulates Rop1 to control polarized pollen tube growth.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9LQ89|ROGF2_ARATH Rop guanine nucleotide exchange factor 2 OS=Arabidopsis thaliana GN=ROPGEF2 PE=1 SV=2

 Score =  400 bits (1027), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 211/379 (55%), Positives = 271/379 (71%), Gaps = 18/379 (4%)

Query: 95  EVEMMKERFAKLLLGEDMSGGGKGVCTALAISNAITNLSATVFGELWRLEPLAPQKKAMW 154
           E+E MKERF+KLLLGEDMSG GKGVCTA+ ISNAITNL ATVFG+  RLEPL  ++K  W
Sbjct: 116 ELETMKERFSKLLLGEDMSGSGKGVCTAVTISNAITNLYATVFGQNLRLEPLEIEQKTTW 175

Query: 155 RREMQWLLCVSDSIVELVPSIQQFPGGGTYEVMATRPRSDLYMNLPALKKLDAMLIGMLD 214
           +REM  LL V D I E +P  Q    G T EVM +RPR+D+Y+NLPAL+KLD+ML+  LD
Sbjct: 176 KREMNCLLSVCDYIFEFIPKSQNLSNGATVEVMESRPRADIYINLPALRKLDSMLMEALD 235

Query: 215 GFCETEFWYVDRGIVVGDGGDRDAFSSMVPSGRPSV--RHEEKWWLPCPKVPQNGLSEDV 272
            F +TEFWY + G +        +  S   S R  +  R EEKWWLP P VP  GLSE  
Sbjct: 236 SFQKTEFWYAEEGSL-----SMKSTRSATGSFRKVIVQRKEEKWWLPIPLVPLQGLSEKA 290

Query: 273 RKKLQQCRDCTNQILKAAMAINSSVLAEMEIPAAYLETLPKNGKACLGDIIYRYITAD-Q 331
           RK+L+  R+ TNQI KAAMAINSS+L EM+IP +Y+ TLPK+GKA  GD IYR++T+  +
Sbjct: 291 RKQLKSKRESTNQIHKAAMAINSSILGEMDIPDSYMATLPKSGKASTGDAIYRHMTSSGR 350

Query: 332 FSPECLLDCLDLSSEHHTLEVANRIEAAVHVWKQKDQRKHLSHSKSRRSSWGGKVKGLVA 391
           FSPE LLD L + SEH  L++A+R+EA+++ W++K     L++SK   SSW   VK L++
Sbjct: 351 FSPEKLLDRLKIVSEHEALQLADRVEASMYTWRRK---ACLNNSK---SSW-NMVKDLMS 403

Query: 392 DSE---KNHSLAHRAETLLHSLRLRFPGLPQTALDMNKIQYNKDVGQSILESYSRVMESL 448
            +E   KN+ LA RAE+LL  L+ R+P L QT+LD+ KI  NKDVG+++LESYSRV+E L
Sbjct: 404 ITERSDKNYVLAERAESLLFCLKQRYPELSQTSLDICKIHCNKDVGKAVLESYSRVLEGL 463

Query: 449 AFNIMARIDDVLFVDDATK 467
           AFNI+A IDDVL+VD   +
Sbjct: 464 AFNIVAWIDDVLYVDKTMR 482

Acts as an activator of Rop GTPases by exchanging GDP with GTP.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LV40|ROGF8_ARATH Rho guanine nucleotide exchange factor 8 OS=Arabidopsis thaliana GN=ROPGEF8 PE=1 SV=1

 Score =  396 bits (1017), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 203/392 (51%), Positives = 267/392 (68%), Gaps = 26/392 (6%)

Query: 87  EKSDTDLSEVEMMKERFAKLLLGEDMSGGGKGVCTALAISNAITNLSATVFGELWRLEPL 146
           ++S+   +++EMMK+RFAKLLLGEDMSGGGKGV +ALA+SNAITNL+A++FGE  +L+P+
Sbjct: 77  KRSERQQADMEMMKDRFAKLLLGEDMSGGGKGVSSALALSNAITNLAASIFGEQTKLQPM 136

Query: 147 APQKKAMWRREMQWLLCVSDSIVELVPSIQQFPGGGTYEVMATRPRSDLYMNLPALKKLD 206
              ++A W++E+ WLL V+D IVE VPS Q    G   E+M TR R DL MN+PAL+KLD
Sbjct: 137 PQDRQARWKKEIDWLLSVTDHIVEFVPSQQTSKDGVCTEIMVTRQRGDLLMNIPALRKLD 196

Query: 207 AMLIGMLDGF-CETEFWYVDRGIVVGDGGDRDAFSSMVPSGRPSVRHEEKWWLPCPKVPQ 265
           AMLI  LD F    EFWYV R    G     D             R  +KWWLP  KVP 
Sbjct: 197 AMLIDTLDNFRGHNEFWYVSRDSEEGQQARND-------------RTNDKWWLPPVKVPP 243

Query: 266 NGLSEDVRKKLQQCRDCTNQILKAAMAINSSVLAEMEIPAAYLETLPKNGKACLGDIIYR 325
            GLSE  R+ L   +D   Q+ KAAMAIN+ VL+EMEIP +Y+++LPKNG+A LGD IY+
Sbjct: 244 GGLSEPSRRMLYFQKDSVTQVQKAAMAINAQVLSEMEIPESYIDSLPKNGRASLGDSIYK 303

Query: 326 YITADQFSPECLLDCLDLSSEHHTLEVANRIEAAVHVWKQKDQRKHLSHSKSRRSSWGGK 385
            IT + F PE  L  LD+S+EH  L++ NRIEA+V +WK+K       H+K  +SSWG  
Sbjct: 304 SITEEWFDPEQFLAMLDMSTEHKVLDLKNRIEASVVIWKRK------LHTKDTKSSWGSA 357

Query: 386 VKGLVADSEKNHSLAHRAETLLHSLRLRFPGLPQTALDMNKIQYNKDVGQSILESYSRVM 445
           V       EK      RAET+L  L+ +FPGLPQ++LD++KIQ+NKDVGQ++LESYSR++
Sbjct: 358 VS-----LEKRELFEERAETILVLLKQKFPGLPQSSLDISKIQFNKDVGQAVLESYSRIL 412

Query: 446 ESLAFNIMARIDDVLFVDD-ATKRCAAAESIS 476
           ESLA+ +M+RI+DVL+ D  A K+   AE  S
Sbjct: 413 ESLAYTVMSRIEDVLYTDTLALKQTLLAEETS 444

Guanine-nucleotide exchange factor (GEF) that acts as an activator of Rop GTPases by exchanging GDP with GTP. Active as homodimer.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	574
224103115	577	predicted protein [Populus trichocarpa]	0.996	0.991	0.825	0.0
225428257	587	PREDICTED: rop guanine nucleotide exchan	0.994	0.972	0.818	0.0
255575043	580	Rop guanine nucleotide exchange factor,	0.991	0.981	0.812	0.0
224080678	576	predicted protein [Populus trichocarpa]	0.994	0.991	0.811	0.0
356538528	566	PREDICTED: rop guanine nucleotide exchan	0.975	0.989	0.8	0.0
356544030	562	PREDICTED: rop guanine nucleotide exchan	0.968	0.989	0.798	0.0
356544032	568	PREDICTED: rop guanine nucleotide exchan	0.968	0.978	0.790	0.0
449444380	570	PREDICTED: rop guanine nucleotide exchan	0.987	0.994	0.766	0.0
332688639	558	RopGEF1 [Medicago truncatula]	0.963	0.991	0.763	0.0
15233845	548	Rop guanine nucleotide exchange factor 1	0.951	0.996	0.717	0.0

>gi|224103115|ref|XP_002312931.1| predicted protein [Populus trichocarpa] gi|222849339|gb|EEE86886.1| predicted protein [Populus trichocarpa]

 Score =  954 bits (2466), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 478/579 (82%), Positives = 514/579 (88%), Gaps = 7/579 (1%)

Query: 1   MGSVSSDDDVSDQQSERCGSYSLSADVSESESCSSS-SFSGRR---FDAEGASSSMTSSP 56
           MGSVSSDDD     SERCGSYSLSADVSESESC+SS +FS RR    D   ASSSMTSSP
Sbjct: 1   MGSVSSDDDGGG--SERCGSYSLSADVSESESCTSSSNFSCRRGLGRDGGCASSSMTSSP 58

Query: 57  RPVARGFGFPVPVMVPVIGGKDVVVWDEKPEKS-DTDLSEVEMMKERFAKLLLGEDMSGG 115
           RPVA GF FP PVMVPVIGGKDVVVW  K EK  +TDLSEVEMMKERFAKLLLGEDMSGG
Sbjct: 59  RPVAGGFCFPAPVMVPVIGGKDVVVWGSKNEKRRETDLSEVEMMKERFAKLLLGEDMSGG 118

Query: 116 GKGVCTALAISNAITNLSATVFGELWRLEPLAPQKKAMWRREMQWLLCVSDSIVELVPSI 175
           GKGVCTALAISNAITNLSATVFGELWRLEPL PQKK+MW+REM+WLLCVSDSIVELVPS+
Sbjct: 119 GKGVCTALAISNAITNLSATVFGELWRLEPLLPQKKSMWKREMEWLLCVSDSIVELVPSM 178

Query: 176 QQFPGGGTYEVMATRPRSDLYMNLPALKKLDAMLIGMLDGFCETEFWYVDRGIVVGDGGD 235
           QQFPGGGTYEVMATRPRSDLY+NLPALKKLDAMLI MLDGFCETEFWYVDRGIVV DGGD
Sbjct: 179 QQFPGGGTYEVMATRPRSDLYVNLPALKKLDAMLISMLDGFCETEFWYVDRGIVVADGGD 238

Query: 236 RDAFSSMVPSGRPSVRHEEKWWLPCPKVPQNGLSEDVRKKLQQCRDCTNQILKAAMAINS 295
            DA+ S +  GRPS+R EEKWWLPCPKVP NGLS+D RK+LQQCRDCTNQILKAAMAINS
Sbjct: 239 CDAYPSGISGGRPSIRQEEKWWLPCPKVPPNGLSDDARKRLQQCRDCTNQILKAAMAINS 298

Query: 296 SVLAEMEIPAAYLETLPKNGKACLGDIIYRYITADQFSPECLLDCLDLSSEHHTLEVANR 355
           SVL EMEIP AY+ETLPKNGKACLGDIIYRYITA+QFSP+ LLDCLDLS+EHHTLE+ANR
Sbjct: 299 SVLVEMEIPTAYMETLPKNGKACLGDIIYRYITAEQFSPDRLLDCLDLSTEHHTLEIANR 358

Query: 356 IEAAVHVWKQKDQRKHLSHSKSRRSSWGGKVKGLVADSEKNHSLAHRAETLLHSLRLRFP 415
           IEAAVHVWKQKD +KH  + + + SSWGGKVKG V DS KN  LA RAETLL SLRLRFP
Sbjct: 359 IEAAVHVWKQKDHKKHTHNMRIKHSSWGGKVKGFVTDSHKNQILAQRAETLLQSLRLRFP 418

Query: 416 GLPQTALDMNKIQYNKDVGQSILESYSRVMESLAFNIMARIDDVLFVDDATKRCAAAESI 475
           GLPQT LDMNKIQYNKDVGQSILESYSRVMESLAFNIMARIDDV++VDDA K+CAAAES+
Sbjct: 419 GLPQTTLDMNKIQYNKDVGQSILESYSRVMESLAFNIMARIDDVIYVDDAIKQCAAAESM 478

Query: 476 SLFSRGGLSGLPIQKRMSPSPFSIQHTPYASPFGTPTFCSSTPVGGSPGRVPTAQKRSSL 535
           SLF+RGGL GLPIQKRMSPSPFSIQ +P+ASPF TPT+C+STPV GSP RVP++ KR   
Sbjct: 479 SLFNRGGLGGLPIQKRMSPSPFSIQQSPFASPFATPTYCASTPVSGSPERVPSSLKRGKP 538

Query: 536 KEAPPRKLEKPCPAEFERVWSYAGNLSSRRVSGDAPERD 574
           KEAP RKLEKP  ++FE VW+Y GNLSSRRVSGDAPERD
Sbjct: 539 KEAPDRKLEKPLSSDFETVWTYTGNLSSRRVSGDAPERD 577

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225428257|ref|XP_002282312.1| PREDICTED: rop guanine nucleotide exchange factor 1 [Vitis vinifera] gi|297744497|emb|CBI37759.3| unnamed protein product [Vitis vinifera]

 Score =  943 bits (2438), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 483/590 (81%), Positives = 520/590 (88%), Gaps = 19/590 (3%)

Query: 1   MGSVSSDDDVSDQQSERCGSYSLSADVSESESCSSSSFSGRRFDAEGASSSMTSSP---R 57
           MGSVSS++ V D QS+RCGSYSLSADVSESES   SSFS RR+D EGASSSMTSSP   R
Sbjct: 1   MGSVSSEEGV-DDQSDRCGSYSLSADVSESES--CSSFSCRRYDGEGASSSMTSSPLACR 57

Query: 58  PVARGFGFPV--PVMVPVIGGKDVVVWDEKPEKSDTDLSEVEMMKERFAKLLLGEDMSGG 115
           PV     FPV  P+M+PVIGG+DVVVW EKPEK +TDLSE EMMKERFAKLLLGEDMSGG
Sbjct: 58  PVVGNSSFPVGPPLMLPVIGGRDVVVWGEKPEKRETDLSEAEMMKERFAKLLLGEDMSGG 117

Query: 116 GKGVCTALAISNAITNLSATVFGELWRLEPLAPQKKAMWRREMQWLLCVSDSIVELVPSI 175
           GKGVCTALAISNAITNLSATVFGELWRLEPLAPQKKAMW REM+WLLCVSDSIVELVPSI
Sbjct: 118 GKGVCTALAISNAITNLSATVFGELWRLEPLAPQKKAMWCREMEWLLCVSDSIVELVPSI 177

Query: 176 QQFPGGGTYEVMATRPRSDLYMNLPALKKLDAMLIGMLDGFCETEFWYVDRGIVVGDGGD 235
           QQFPGGGTYEVMATRPRSDLYMNLPALKKLDAML+ MLDGFCETEFWYVDRGI+V +  +
Sbjct: 178 QQFPGGGTYEVMATRPRSDLYMNLPALKKLDAMLLSMLDGFCETEFWYVDRGIIVAEADN 237

Query: 236 RDAFSSMVPSGRPSVRHEEKWWLPCPKVPQNGLSEDVRKKLQQCRDCTNQILKAAMAINS 295
            DA+     SGRPS+R EEKWWLPCPKVP NGLSED RK+LQQCRDCTNQILKAAMAINS
Sbjct: 238 HDAYPLSASSGRPSIRQEEKWWLPCPKVPPNGLSEDARKRLQQCRDCTNQILKAAMAINS 297

Query: 296 SVLAEMEIPAAYLETLPKNGKACLGDIIYRYITADQFSPECLLDCLDLSSEHHTLEVANR 355
           SVLAEMEIP AYLETLPKNGKACLGDIIYRYITA+QFSPECLLDCLDLSSEHHTLE+ANR
Sbjct: 298 SVLAEMEIPTAYLETLPKNGKACLGDIIYRYITAEQFSPECLLDCLDLSSEHHTLEIANR 357

Query: 356 IEAAVHVWKQKDQRKHLSHSKSRRSSWGGKVKGLVADSEKNHSLAHRAETLLHSLRLRFP 415
           IEAAVHVWKQKD +K   H K++RS+WGGKVKGLVAD+EKN  LA RAETLLHSLRLRFP
Sbjct: 358 IEAAVHVWKQKDWKKQPKHLKAKRSTWGGKVKGLVADTEKNQFLAIRAETLLHSLRLRFP 417

Query: 416 GLPQTALDMNKIQYNKDVGQSILESYSRVMESLAFNIMARIDDVLFVDDATKRCAAAESI 475
           GLPQTALDMNKIQYNKDVGQSILESYSRVMESLAFNIMARIDDVL+VDDA KRCAAAES+
Sbjct: 418 GLPQTALDMNKIQYNKDVGQSILESYSRVMESLAFNIMARIDDVLYVDDAVKRCAAAESM 477

Query: 476 SLFSRGGLSGLPIQKRMSPSPFSIQHTPYASPFGTPTFCSSTPVGGSPGRVPTAQKRSSL 535
           +LF RGGL GLPIQKRMSPSPFSIQH+P+ASPF TPTFCSSTP+ GSPGR P ++ + S 
Sbjct: 478 ALFGRGGLGGLPIQKRMSPSPFSIQHSPFASPFATPTFCSSTPLTGSPGRTPPSRNKMSS 537

Query: 536 K-----------EAPPRKLEKPCPAEFERVWSYAGNLSSRRVSGDAPERD 574
           K            AP  KLEKP PA+FE++WSY GNLS+R+VSGDAPERD
Sbjct: 538 KGAPELKLEKPIPAPEMKLEKPIPADFEKMWSYTGNLSARKVSGDAPERD 587

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255575043|ref|XP_002528427.1| Rop guanine nucleotide exchange factor, putative [Ricinus communis] gi|223532163|gb|EEF33969.1| Rop guanine nucleotide exchange factor, putative [Ricinus communis]

 Score =  939 bits (2428), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 469/577 (81%), Positives = 516/577 (89%), Gaps = 8/577 (1%)

Query: 1   MGSVSSDDDVSDQQSERCGSYSLSADVSESESCSSSSFSGRR-FDAEGASSSMTSSP-RP 58
           MGSVSSDD   D+QSERCGSYSLSADVSESES +SSSF  RR FD EGAS+S+TSSP  P
Sbjct: 9   MGSVSSDDG-GDEQSERCGSYSLSADVSESESSTSSSFWCRRGFDGEGASTSITSSPPLP 67

Query: 59  VARGFGFPVPVMVPVIGGKDVVVWDEKPEKSDTDLSEVEMMKERFAKLLLGEDMSGGGKG 118
            +  F F      P++  KD+++WD KPEK DTDLSEVEMMKERFAKLLLGEDMSGGGKG
Sbjct: 68  SSAKFCF----QTPLLLPKDLLLWDIKPEKRDTDLSEVEMMKERFAKLLLGEDMSGGGKG 123

Query: 119 VCTALAISNAITNLSATVFGELWRLEPLAPQKKAMWRREMQWLLCVSDSIVELVPSIQQF 178
           VCTALAISNAITNLSATVFGELWRLEPLAPQKK+MWRREM+WLLCVSDSIVELVPS+QQF
Sbjct: 124 VCTALAISNAITNLSATVFGELWRLEPLAPQKKSMWRREMEWLLCVSDSIVELVPSVQQF 183

Query: 179 PGGGTYEVMATRPRSDLYMNLPALKKLDAMLIGMLDGFCETEFWYVDRGIVVGDGGDRDA 238
           PGGGTYE+MA +PRSDLY+NLPALKKLDAMLI MLDGFCETEFWYVDRGI++ DG D D 
Sbjct: 184 PGGGTYEIMAAQPRSDLYVNLPALKKLDAMLISMLDGFCETEFWYVDRGIILADGADNDV 243

Query: 239 FSSMVPSGRPSVRHEEKWWLPCPKVPQNGLSEDVRKKLQQCRDCTNQILKAAMAINSSVL 298
           + S   +GRPS+R EEKWWLPCPK+P NGLSED RK+LQQCRDCTNQILKAAMAINSSVL
Sbjct: 244 YPSGFSTGRPSIRQEEKWWLPCPKLPSNGLSEDARKRLQQCRDCTNQILKAAMAINSSVL 303

Query: 299 AEMEIPAAYLETLPKNGKACLGDIIYRYITADQFSPECLLDCLDLSSEHHTLEVANRIEA 358
           AEMEIP AYLETLPK GKACLGDIIYRYITA+QFSPECLLDCLDLS+EHHTLE+ANRIEA
Sbjct: 304 AEMEIPTAYLETLPKCGKACLGDIIYRYITAEQFSPECLLDCLDLSTEHHTLEIANRIEA 363

Query: 359 AVHVWKQKDQRKHLSHSKSRRSSWGGKVKGLVADSE-KNHSLAHRAETLLHSLRLRFPGL 417
           A+HVWKQKDQRKH SH+K+R +SWGGKVKGLVAD++ KN  LA RAETLL SLRLRFPGL
Sbjct: 364 ALHVWKQKDQRKHTSHTKARHTSWGGKVKGLVADTKRKNTFLAQRAETLLQSLRLRFPGL 423

Query: 418 PQTALDMNKIQYNKDVGQSILESYSRVMESLAFNIMARIDDVLFVDDATKRCAAAESISL 477
           PQTALDM+KIQYNKDVGQSILESYSRVMESLAFNIMARIDDV++VDDAT RCAAAES+SL
Sbjct: 424 PQTALDMHKIQYNKDVGQSILESYSRVMESLAFNIMARIDDVIYVDDATNRCAAAESMSL 483

Query: 478 FSRGGLSGLPIQKRMSPSPFSIQHTPYASPFGTPTFCSSTPVGGSPGRVPTAQKRSSLKE 537
           F+R GL G PIQKRMSPSPFSIQ +P+ SPF TPTFCSSTPV GSPGR P++ K +++KE
Sbjct: 484 FNRSGLGGHPIQKRMSPSPFSIQQSPFTSPFATPTFCSSTPVAGSPGRAPSSIKMNNIKE 543

Query: 538 APPRKLEKPCPAEFERVWSYAGNLSSRRVSGDAPERD 574
           A  +K EKPCPA+FE+VWSY GNLSSRRVSGDAPERD
Sbjct: 544 ATDQKFEKPCPADFEKVWSYTGNLSSRRVSGDAPERD 580

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224080678|ref|XP_002306208.1| predicted protein [Populus trichocarpa] gi|222849172|gb|EEE86719.1| predicted protein [Populus trichocarpa]

 Score =  937 bits (2423), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 470/579 (81%), Positives = 508/579 (87%), Gaps = 8/579 (1%)

Query: 1   MGSVSSDDDVSDQQSERCGSYSLSADVSESESCSSSSFSGRRF----DAEGASSSMTSSP 56
           MGSVSSDDD     SERCGSYSLSADVSESESC+S+S    R     D    SSSMTSSP
Sbjct: 1   MGSVSSDDDGGG--SERCGSYSLSADVSESESCTSTSSFSCRRGFGRDGGAVSSSMTSSP 58

Query: 57  RPVARGFGFPVPVMVPVIGGKDVVVWDEKPEK-SDTDLSEVEMMKERFAKLLLGEDMSGG 115
           RP+  GF FP PVMVPVIGGKDVVVWD K EK  D DLSEVEMMKERFAKLLLGEDMSGG
Sbjct: 59  RPLPGGFCFPAPVMVPVIGGKDVVVWDSKNEKRGDADLSEVEMMKERFAKLLLGEDMSGG 118

Query: 116 GKGVCTALAISNAITNLSATVFGELWRLEPLAPQKKAMWRREMQWLLCVSDSIVELVPSI 175
           GKGVCTALAISNAITNLSATVFGELWRLEPLA QKK+MW+REM+WLLCVSDSIVELVPSI
Sbjct: 119 GKGVCTALAISNAITNLSATVFGELWRLEPLALQKKSMWKREMEWLLCVSDSIVELVPSI 178

Query: 176 QQFPGGGTYEVMATRPRSDLYMNLPALKKLDAMLIGMLDGFCETEFWYVDRGIVVGDGGD 235
           QQFPGGGTYEVMATRPRSDLY+NLPALKKLDAMLI MLDGF ETEFWY DRGIVVGDGGD
Sbjct: 179 QQFPGGGTYEVMATRPRSDLYVNLPALKKLDAMLITMLDGFSETEFWYADRGIVVGDGGD 238

Query: 236 RDAFSSMVPSGRPSVRHEEKWWLPCPKVPQNGLSEDVRKKLQQCRDCTNQILKAAMAINS 295
            D + S +  GRPS+R E+KWWLPCPKVP +GLSED RK+LQQCRDCTNQILKAAMAINS
Sbjct: 239 CDTYPSGISGGRPSIRQEDKWWLPCPKVPPDGLSEDARKRLQQCRDCTNQILKAAMAINS 298

Query: 296 SVLAEMEIPAAYLETLPKNGKACLGDIIYRYITADQFSPECLLDCLDLSSEHHTLEVANR 355
           SVL EMEIP AY+ETLPKNGKACLGDIIYRYITA++FSPECLLDCLDLS+EHHTLE+ANR
Sbjct: 299 SVLVEMEIPTAYMETLPKNGKACLGDIIYRYITAEKFSPECLLDCLDLSTEHHTLEIANR 358

Query: 356 IEAAVHVWKQKDQRKHLSHSKSRRSSWGGKVKGLVADSEKNHSLAHRAETLLHSLRLRFP 415
           +EAAVH+WKQKD RKH+ +   + SSWGGKVKG VAD+ KN  LA RAETLL SLRLR+P
Sbjct: 359 VEAAVHIWKQKDHRKHIHNKNIKHSSWGGKVKGFVADTHKNQILAQRAETLLQSLRLRYP 418

Query: 416 GLPQTALDMNKIQYNKDVGQSILESYSRVMESLAFNIMARIDDVLFVDDATKRCAAAESI 475
           GLPQTALDMNKIQYNKDVGQSILESYSRV ESLAFNIMARIDDVLFVDDATK+CAAAESI
Sbjct: 419 GLPQTALDMNKIQYNKDVGQSILESYSRVTESLAFNIMARIDDVLFVDDATKQCAAAESI 478

Query: 476 SLFSRGGLSGLPIQKRMSPSPFSIQHTPYASPFGTPTFCSSTPVGGSPGRVPTAQKRSSL 535
           SLF+RGGL G PIQKRMSPSPFSI+ +P+ASP+GTPT+ +STPV GSP RVP  QKR + 
Sbjct: 479 SLFNRGGLGGHPIQKRMSPSPFSIKQSPFASPYGTPTYFASTPVSGSPARVP-PQKRGNP 537

Query: 536 KEAPPRKLEKPCPAEFERVWSYAGNLSSRRVSGDAPERD 574
           KEA  +K EKP   +FERVWSYAG++SSRRVSGDAPERD
Sbjct: 538 KEASDQKFEKPLSPDFERVWSYAGSISSRRVSGDAPERD 576

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356538528|ref|XP_003537755.1| PREDICTED: rop guanine nucleotide exchange factor 1-like [Glycine max]

 Score =  907 bits (2343), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 464/580 (80%), Positives = 503/580 (86%), Gaps = 20/580 (3%)

Query: 1   MGSVSSDDDVSDQQSERCGSYSLSADVSESESCSSSSFSGRRFDAEGASSSMTSSPRPVA 60
           MGSVSS+D  SD  S RCGSYSLSADVSESES   SSFS RRFDAEGASSS   SPRPVA
Sbjct: 1   MGSVSSED-ASDHMSNRCGSYSLSADVSESES--CSSFSARRFDAEGASSSANLSPRPVA 57

Query: 61  RGFGFP-VPVMVPVIGGKDVVVWDEKPEKSDTDLSEVEMMKERFAKLLLGEDMSGGGKGV 119
             F FP   V++PVIGGKDV VWD K    D DLSEVEMMKERFAKLLLGEDMSGGGKGV
Sbjct: 58  AHFNFPPAQVLLPVIGGKDVFVWDHK---RDLDLSEVEMMKERFAKLLLGEDMSGGGKGV 114

Query: 120 CTALAISNAITNLSATVFGELWRLEPLAPQKKAMWRREMQWLLCVSDSIVELVPSIQQFP 179
           CTALAISNAITNLSATVFGELWRLEPLAPQKKAMWRREM+WLLCVSDSIVELVPS+QQFP
Sbjct: 115 CTALAISNAITNLSATVFGELWRLEPLAPQKKAMWRREMEWLLCVSDSIVELVPSVQQFP 174

Query: 180 GGGTYEVMATRPRSDLYMNLPALKKLDAMLIGMLDGFCETEFWYVDRGIVVGDGGDRDAF 239
           GGGTYEVMATRPRSDLY+NLPALKKLD ML+ MLDGF +T+FWYVDRGI++GD  D DA+
Sbjct: 175 GGGTYEVMATRPRSDLYINLPALKKLDGMLLSMLDGFHDTQFWYVDRGIILGDSKDCDAY 234

Query: 240 SSMVPSGRPSVRHEEKWWLPCPKVPQNGLSEDVRKKLQQCRDCTNQILKAAMAINSSVLA 299
                 GRPSVR EEKWWLP PK+P NGLSE+ RK+LQQCRDCTNQILKAA+AIN+SVLA
Sbjct: 235 ------GRPSVRQEEKWWLPSPKLPPNGLSEESRKRLQQCRDCTNQILKAAVAINTSVLA 288

Query: 300 EMEIPAAYLETLPKNGKACLGDIIYRYITADQFSPECLLDCLDLSSEHHTLEVANRIEAA 359
           EMEIP AY+E+LPKNGKACLGDIIYRY+TADQFSPECLLDCLDLSSEHHTL++ANRIEAA
Sbjct: 289 EMEIPGAYIESLPKNGKACLGDIIYRYLTADQFSPECLLDCLDLSSEHHTLDIANRIEAA 348

Query: 360 VHVWKQKDQRKHLSHSKSRRSSWGGKVKGLVADSEKNHS--LAHRAETLLHSLRLRFPGL 417
           +HVW+ KD +KHLS +KSRR  WGGKVKGLVADSEKN +  LA RAETLL SL+ RFPGL
Sbjct: 349 IHVWRLKDHKKHLSSAKSRR-PWGGKVKGLVADSEKNKNNFLAQRAETLLESLKHRFPGL 407

Query: 418 PQTALDMNKIQYNKDVGQSILESYSRVMESLAFNIMARIDDVLFVDDATKRCAAAESISL 477
           PQTALDM KIQYNKDVGQSILESYSRVMESLAFNIMARIDDVL+VDD+ KRCAAA+S+SL
Sbjct: 408 PQTALDMAKIQYNKDVGQSILESYSRVMESLAFNIMARIDDVLYVDDSIKRCAAADSLSL 467

Query: 478 FSRGGLSGLPIQKRMSPSPFSIQHTPYASPFGTPTFCSSTPVGG---SPGRVPTAQKRSS 534
           FSRGG  G+PIQKR SPSPFSIQHTPYASPF TPTFCSSTPV G   SP R+    KR++
Sbjct: 468 FSRGGFGGMPIQKRFSPSPFSIQHTPYASPFATPTFCSSTPVTGSPCSPARIHDV-KRNA 526

Query: 535 LKEAPPRKLEKPCPAEFERVWSYAGNLSSRRVSGDAPERD 574
            KE    K +K   +EFERVWSYAGNLS+RRVSGDAPERD
Sbjct: 527 PKEGADSKTDKLATSEFERVWSYAGNLSARRVSGDAPERD 566

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356544030|ref|XP_003540459.1| PREDICTED: rop guanine nucleotide exchange factor 1-like isoform 1 [Glycine max]

 Score =  903 bits (2334), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 463/580 (79%), Positives = 501/580 (86%), Gaps = 24/580 (4%)

Query: 1   MGSVSSDDDVSDQQSERCGSYSLSADVSESESCSSSSFSGRRFDAEGASSSMTSSPRPVA 60
           MGSVSS+D      S+RCGSYSLSADVSESES   SSFS RRFDAEGASSS   SPRPVA
Sbjct: 1   MGSVSSEDG-----SDRCGSYSLSADVSESES--CSSFSARRFDAEGASSSANLSPRPVA 53

Query: 61  RGFGFP-VPVMVPVIGGKDVVVWDEKPEKSDTDLSEVEMMKERFAKLLLGEDMSGGGKGV 119
             F FP   VM+PVIGGKDVVVWD K    D DLSEVEMMKERFAKLLLGEDMSGGGKGV
Sbjct: 54  AHFNFPPAQVMLPVIGGKDVVVWDHK---RDLDLSEVEMMKERFAKLLLGEDMSGGGKGV 110

Query: 120 CTALAISNAITNLSATVFGELWRLEPLAPQKKAMWRREMQWLLCVSDSIVELVPSIQQFP 179
           CTALAISNAITNLSATVFGELWRLEPLAPQKK MWRREM+WLLCVSDSIVELVPS+QQFP
Sbjct: 111 CTALAISNAITNLSATVFGELWRLEPLAPQKKTMWRREMEWLLCVSDSIVELVPSVQQFP 170

Query: 180 GGGTYEVMATRPRSDLYMNLPALKKLDAMLIGMLDGFCETEFWYVDRGIVVGDGGDRDAF 239
           GGGTYEVMATRPRSDLY+NLPALKKLD ML+ MLDGF +T+FWYVDRGI++GD  D DA+
Sbjct: 171 GGGTYEVMATRPRSDLYINLPALKKLDGMLLNMLDGFHDTQFWYVDRGIILGDSKDCDAY 230

Query: 240 SSMVPSGRPSVRHEEKWWLPCPKVPQNGLSEDVRKKLQQCRDCTNQILKAAMAINSSVLA 299
                 GRPSVR EEKWWLP PK+P NGLSE+ RK+LQQCRDCTNQILKAA+AIN+SVLA
Sbjct: 231 ------GRPSVRQEEKWWLPSPKLPPNGLSEESRKRLQQCRDCTNQILKAAVAINTSVLA 284

Query: 300 EMEIPAAYLETLPKNGKACLGDIIYRYITADQFSPECLLDCLDLSSEHHTLEVANRIEAA 359
           EMEIP AY+E+LPKNGKACLGDIIYRYITADQFSPECLLDCLDLS+EHHTL++ANRIEAA
Sbjct: 285 EMEIPGAYIESLPKNGKACLGDIIYRYITADQFSPECLLDCLDLSTEHHTLDIANRIEAA 344

Query: 360 VHVWKQKDQRKHLSHSKSRRSSWGGKVKGLVADSEKNHS--LAHRAETLLHSLRLRFPGL 417
           +HVW+ KD +KHLS +KSRR SWGGKVKGLVAD EKN +  LA RAETLL SL+ RFPGL
Sbjct: 345 IHVWRLKDHKKHLSSAKSRR-SWGGKVKGLVADGEKNKNNFLAQRAETLLESLKHRFPGL 403

Query: 418 PQTALDMNKIQYNKDVGQSILESYSRVMESLAFNIMARIDDVLFVDDATKRCAAAESISL 477
           PQTALDM KIQYNKDVGQSILESYSRVMESLAFNIMARIDDVL+VDD+ KRCAAA+S+SL
Sbjct: 404 PQTALDMAKIQYNKDVGQSILESYSRVMESLAFNIMARIDDVLYVDDSIKRCAAADSLSL 463

Query: 478 FSRGGLSGLPIQKRMSPSPFSIQHTPYASPFGTPTFCSSTPVGG---SPGRVPTAQKRSS 534
           FSRGG  G+PIQKR SPSPFSIQHTPYASPF TPTFCSSTPV G   SP R+    KR++
Sbjct: 464 FSRGGFGGMPIQKRFSPSPFSIQHTPYASPFATPTFCSSTPVTGSPCSPARIHDV-KRNA 522

Query: 535 LKEAPPRKLEKPCPAEFERVWSYAGNLSSRRVSGDAPERD 574
            KE    K EK   +EFERVWSYAGNLS+RR SGDAPERD
Sbjct: 523 PKEGADSKTEKLATSEFERVWSYAGNLSARRASGDAPERD 562

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356544032|ref|XP_003540460.1| PREDICTED: rop guanine nucleotide exchange factor 1-like isoform 2 [Glycine max]

 Score =  897 bits (2319), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 463/586 (79%), Positives = 501/586 (85%), Gaps = 30/586 (5%)

Query: 1   MGSVSSDDDVSDQQSERCGSYSLSADVSESESCSSSSFSGRRFDAEGASSSMTSSPRPVA 60
           MGSVSS+D      S+RCGSYSLSADVSESES   SSFS RRFDAEGASSS   SPRPVA
Sbjct: 1   MGSVSSEDG-----SDRCGSYSLSADVSESES--CSSFSARRFDAEGASSSANLSPRPVA 53

Query: 61  RGFGFP-VPVMVPVIGGKDVVVWDEKPEKSDTDLSE------VEMMKERFAKLLLGEDMS 113
             F FP   VM+PVIGGKDVVVWD K    D DLSE      VEMMKERFAKLLLGEDMS
Sbjct: 54  AHFNFPPAQVMLPVIGGKDVVVWDHK---RDLDLSEQLHFAEVEMMKERFAKLLLGEDMS 110

Query: 114 GGGKGVCTALAISNAITNLSATVFGELWRLEPLAPQKKAMWRREMQWLLCVSDSIVELVP 173
           GGGKGVCTALAISNAITNLSATVFGELWRLEPLAPQKK MWRREM+WLLCVSDSIVELVP
Sbjct: 111 GGGKGVCTALAISNAITNLSATVFGELWRLEPLAPQKKTMWRREMEWLLCVSDSIVELVP 170

Query: 174 SIQQFPGGGTYEVMATRPRSDLYMNLPALKKLDAMLIGMLDGFCETEFWYVDRGIVVGDG 233
           S+QQFPGGGTYEVMATRPRSDLY+NLPALKKLD ML+ MLDGF +T+FWYVDRGI++GD 
Sbjct: 171 SVQQFPGGGTYEVMATRPRSDLYINLPALKKLDGMLLNMLDGFHDTQFWYVDRGIILGDS 230

Query: 234 GDRDAFSSMVPSGRPSVRHEEKWWLPCPKVPQNGLSEDVRKKLQQCRDCTNQILKAAMAI 293
            D DA+      GRPSVR EEKWWLP PK+P NGLSE+ RK+LQQCRDCTNQILKAA+AI
Sbjct: 231 KDCDAY------GRPSVRQEEKWWLPSPKLPPNGLSEESRKRLQQCRDCTNQILKAAVAI 284

Query: 294 NSSVLAEMEIPAAYLETLPKNGKACLGDIIYRYITADQFSPECLLDCLDLSSEHHTLEVA 353
           N+SVLAEMEIP AY+E+LPKNGKACLGDIIYRYITADQFSPECLLDCLDLS+EHHTL++A
Sbjct: 285 NTSVLAEMEIPGAYIESLPKNGKACLGDIIYRYITADQFSPECLLDCLDLSTEHHTLDIA 344

Query: 354 NRIEAAVHVWKQKDQRKHLSHSKSRRSSWGGKVKGLVADSEKNHS--LAHRAETLLHSLR 411
           NRIEAA+HVW+ KD +KHLS +KSRR SWGGKVKGLVAD EKN +  LA RAETLL SL+
Sbjct: 345 NRIEAAIHVWRLKDHKKHLSSAKSRR-SWGGKVKGLVADGEKNKNNFLAQRAETLLESLK 403

Query: 412 LRFPGLPQTALDMNKIQYNKDVGQSILESYSRVMESLAFNIMARIDDVLFVDDATKRCAA 471
            RFPGLPQTALDM KIQYNKDVGQSILESYSRVMESLAFNIMARIDDVL+VDD+ KRCAA
Sbjct: 404 HRFPGLPQTALDMAKIQYNKDVGQSILESYSRVMESLAFNIMARIDDVLYVDDSIKRCAA 463

Query: 472 AESISLFSRGGLSGLPIQKRMSPSPFSIQHTPYASPFGTPTFCSSTPVGG---SPGRVPT 528
           A+S+SLFSRGG  G+PIQKR SPSPFSIQHTPYASPF TPTFCSSTPV G   SP R+  
Sbjct: 464 ADSLSLFSRGGFGGMPIQKRFSPSPFSIQHTPYASPFATPTFCSSTPVTGSPCSPARIHD 523

Query: 529 AQKRSSLKEAPPRKLEKPCPAEFERVWSYAGNLSSRRVSGDAPERD 574
             KR++ KE    K EK   +EFERVWSYAGNLS+RR SGDAPERD
Sbjct: 524 V-KRNAPKEGADSKTEKLATSEFERVWSYAGNLSARRASGDAPERD 568

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449444380|ref|XP_004139953.1| PREDICTED: rop guanine nucleotide exchange factor 1-like [Cucumis sativus] gi|449475751|ref|XP_004154542.1| PREDICTED: rop guanine nucleotide exchange factor 1-like [Cucumis sativus]

 Score =  868 bits (2243), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 442/577 (76%), Positives = 499/577 (86%), Gaps = 10/577 (1%)

Query: 1   MGSVSSDDDVSDQQSERCGSYSLSADVSESESCSSSSFSGRRFDAEGASSSMTSSPRPVA 60
           MGSVSSDD  SDQ S+RCGSYSLSADVSESES   SSFS RRFD EGASSSM SSP PV+
Sbjct: 1   MGSVSSDDG-SDQLSDRCGSYSLSADVSESES--CSSFSCRRFDGEGASSSMASSPHPVS 57

Query: 61  RGFGFPVPVMVPVIGGKDVVVWDEKPEKSDTDLSEVEMMKERFAKLLLGEDMSGGGKGVC 120
             F FP PV +PV+GGKDV VWD+K +K + DLSEVEMMKERFAKLLLGEDMSGGGKGVC
Sbjct: 58  ANFCFPPPVSLPVLGGKDVFVWDDKSKKREADLSEVEMMKERFAKLLLGEDMSGGGKGVC 117

Query: 121 TALAISNAITNLSATVFGELWRLEPLAPQKKAMWRREMQWLLCVSDSIVELVPSIQQFPG 180
           TALAISNAITNLSA+VFGELWRLEPLAPQK+AMW REM+WLLCV DSIVELVP++Q FPG
Sbjct: 118 TALAISNAITNLSASVFGELWRLEPLAPQKRAMWHREMEWLLCVCDSIVELVPTVQPFPG 177

Query: 181 GGTYEVMATRPRSDLYMNLPALKKLDAMLIGMLDGFCETEFWYVDRGIVVGDGGDRDAFS 240
           GGTYEVM ++PRSDL+MNLPALKKLDA+L+G+L GFC TEFWYVDRGIV+GD  D + F 
Sbjct: 178 GGTYEVMMSKPRSDLHMNLPALKKLDALLLGILGGFCHTEFWYVDRGIVLGDLNDCNDF- 236

Query: 241 SMVPSGRPSVRHEEKWWLPCPKVPQNGLSEDVRKKLQQCRDCTNQILKAAMAINSSVLAE 300
             +P GRPS+R E+KWWLPCPKVP +GLSED RK+LQQCRDCTNQILKAAMAINS+VLAE
Sbjct: 237 --LPGGRPSIRQEDKWWLPCPKVPADGLSEDARKRLQQCRDCTNQILKAAMAINSNVLAE 294

Query: 301 MEIPAAYLETLPKNGKACLGDIIYRYITADQFSPECLLDCLDLSSEHHTLEVANRIEAAV 360
           ME+PAAY+ETLPK+GKACLGDIIYRY+TAD FSPECLLDCLDLSSEHHTLE+ANRIEA++
Sbjct: 295 MEVPAAYMETLPKSGKACLGDIIYRYMTADHFSPECLLDCLDLSSEHHTLEIANRIEASI 354

Query: 361 HVWKQKDQRKHLSHSKSRRSSWGGKVKGLVADSEKNHSLAHRAETLLHSLRLRFPGLPQT 420
           H+W+QKD ++    +K RR +W GKVKG+V D  K+++LA RAETLL SLRLRFPGLPQT
Sbjct: 355 HIWRQKDHKRSGHRNKGRRPTWSGKVKGIVGDPRKSNNLARRAETLLDSLRLRFPGLPQT 414

Query: 421 ALDMNKIQYNKDVGQSILESYSRVMESLAFNIMARIDDVLFVDDATKRCAAAESISLFSR 480
           ALDM KIQYNKDVGQSILESYSRVMESLAFNIMARIDDVL+VDDA KRC  AESISLF+R
Sbjct: 415 ALDMAKIQYNKDVGQSILESYSRVMESLAFNIMARIDDVLYVDDAIKRCVKAESISLFNR 474

Query: 481 GGLSGLPIQKRMSPSPFSIQHTPYASPFGTPTFCSSTPVGGSPGRV---PTAQKRSSLKE 537
            GL GLPIQKRMSPSPFSI  +P+ASPF TPTFCSSTPVGGSPGR+   PT ++ ++ KE
Sbjct: 475 -GLGGLPIQKRMSPSPFSIHQSPFASPFATPTFCSSTPVGGSPGRLSPPPTVKRSNTKKE 533

Query: 538 APPRKLEKPCPAEFERVWSYAGNLSSRRVSGDAPERD 574
                 +K   +E +++WSYAGNLS RRVSG  PERD
Sbjct: 534 TAVLSKDKQSQSEKDKIWSYAGNLSGRRVSGVTPERD 570

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|332688639|gb|AEE89672.1| RopGEF1 [Medicago truncatula]

 Score =  845 bits (2183), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 442/579 (76%), Positives = 482/579 (83%), Gaps = 26/579 (4%)

Query: 1   MGSVSSDDDVSDQQSERCGSYSLSADVSESESCSSSSFSGRRFDAEGASSSMTSSPRPVA 60
           MGSVSS+D      SERCGSYS SAD+SESES  SSSF GRRFDAEGASSS   SPR +A
Sbjct: 1   MGSVSSED-----VSERCGSYSPSADISESES--SSSFYGRRFDAEGASSSANLSPRQLA 53

Query: 61  RGFGFPVP--VMVPVIGGKDVVVWDEKPEKSDTDLSEVEMMKERFAKLLLGEDMSGGGKG 118
             F  P    VM+PVIGGKDV VWD K    D DL+EVEMMKERFAKLLLGEDMSGGGKG
Sbjct: 54  AHFNLPATAQVMLPVIGGKDVAVWDHK---RDLDLTEVEMMKERFAKLLLGEDMSGGGKG 110

Query: 119 VCTALAISNAITNLSATVFGELWRLEPLAPQKKAMWRREMQWLLCVSDSIVELVPSIQQF 178
           VCTALAISNAITNLSATVFGELWRLEPLAPQKKAMWRREM+WLLCVSDSIVELVPS+QQF
Sbjct: 111 VCTALAISNAITNLSATVFGELWRLEPLAPQKKAMWRREMEWLLCVSDSIVELVPSVQQF 170

Query: 179 PGGGTYEVMATRPRSDLYMNLPALKKLDAMLIGMLDGFCETEFWYVDRGIVVGDGGDRDA 238
           PGGGTYEVMATRPRSDLY+NLPALKKLD ML+ MLDGFC+T+FWYVDRGIV+GD  D D 
Sbjct: 171 PGGGTYEVMATRPRSDLYINLPALKKLDGMLLSMLDGFCDTQFWYVDRGIVLGDSKDCDD 230

Query: 239 FSSMVPSGRPSVRHEEKWWLPCPKVPQNGLSEDVRKKLQQCRDCTNQILKAAMAINSSVL 298
           +      GRPSVR EEKWWLP PK+P NGL ED RK+LQQCRDCTNQILKAAMAINSSVL
Sbjct: 231 Y------GRPSVRQEEKWWLPSPKLPPNGLCEDDRKRLQQCRDCTNQILKAAMAINSSVL 284

Query: 299 AEMEIPAAYLETLPKNGKACLGDIIYRYITADQFSPECLLDCLDLSSEHHTLEVANRIEA 358
           AEMEIPAAY+E+LP+NGKACLGDIIYRYITA QFS ECLLDCLDLSSEHHT ++ANRIEA
Sbjct: 285 AEMEIPAAYVESLPRNGKACLGDIIYRYITAGQFSSECLLDCLDLSSEHHTQDIANRIEA 344

Query: 359 AVHVWKQKDQRKHLSHSKSRRSSWGGKVKGLVADSEKNHSLAHRAETLLHSLRLRFPGLP 418
           A+HVW+ KD +K     K+RR SWGGKVK LVAD EKNH L  RAETLL SL+ RFPGLP
Sbjct: 345 AIHVWRLKDYKKLKKSGKARR-SWGGKVKSLVADGEKNHFLVQRAETLLQSLKRRFPGLP 403

Query: 419 QTALDMNKIQYNKDVGQSILESYSRVMESLAFNIMARIDDVLFVDDATKRCAAAESISLF 478
           QTALDM KIQYNKDVGQSILESYSRVMESLAFNIMARIDDVL+VDD  KR AAA+SI   
Sbjct: 404 QTALDMAKIQYNKDVGQSILESYSRVMESLAFNIMARIDDVLYVDDTVKRSAAADSILF- 462

Query: 479 SRGGLSGLPIQKRMSPSPFSIQHTPYASPFGTPTFCSSTPVGG---SPGRVPTAQKRSSL 535
            RGG  GLPIQKRM+PSPFSIQHTPYASPF TP+FCSS+PV G   SP R    ++ +  
Sbjct: 463 GRGGFGGLPIQKRMTPSPFSIQHTPYASPFATPSFCSSSPVSGSPCSPRRTHDVKRNAKG 522

Query: 536 KEAPPRKLEKPCPAEFERVWSYAGNLSSRRVSGDAPERD 574
           K++   KL      ++E+VWSYAGNLS+RR SG+APERD
Sbjct: 523 KDSKAGKL---ASTDYEKVWSYAGNLSARRNSGEAPERD 558

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15233845|ref|NP_195556.1| Rop guanine nucleotide exchange factor 1 [Arabidopsis thaliana] gi|94730494|sp|Q93ZY2.2|ROGF1_ARATH RecName: Full=Rop guanine nucleotide exchange factor 1; Short=RopGEF1; AltName: Full=Kinase partner protein-like; Short=KPP-like gi|4539351|emb|CAB37499.1| putative protein [Arabidopsis thaliana] gi|7270827|emb|CAB80508.1| putative protein [Arabidopsis thaliana] gi|15912195|gb|AAL08231.1| AT4g38430/F22I13_200 [Arabidopsis thaliana] gi|21537213|gb|AAM61554.1| unknown [Arabidopsis thaliana] gi|22137268|gb|AAM91479.1| AT4g38430/F22I13_200 [Arabidopsis thaliana] gi|23306424|gb|AAN17439.1| Unknown protein [Arabidopsis thaliana] gi|24030442|gb|AAN41375.1| unknown protein [Arabidopsis thaliana] gi|332661528|gb|AEE86928.1| Rop guanine nucleotide exchange factor 1 [Arabidopsis thaliana]

 Score =  779 bits (2012), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 413/576 (71%), Positives = 466/576 (80%), Gaps = 30/576 (5%)

Query: 1   MGSVSSDDDVSDQQSERCGSYSLSADVSESESCSSSSFSGRRFDAEGASSSMTSSPRPVA 60
           MGS+SS++D  +  SERCGSYS SAD+SESES SS S    RFD EGASSS+ SSPR VA
Sbjct: 1   MGSLSSEED-DEVSSERCGSYSPSADISESESSSSFSC--HRFDGEGASSSIPSSPRVVA 57

Query: 61  -RGFGFPVPVMVPVIGGKDVVVWDEKPEKSDTDLSEVEMMKERFAKLLLGEDMSGGGKGV 119
            RGF FP PVM+PVIGGKDVV WD+K  + D DLSE+EMMKERFAKLLLGEDMSGGGKGV
Sbjct: 58  GRGFYFPAPVMLPVIGGKDVV-WDDK--QPDNDLSEIEMMKERFAKLLLGEDMSGGGKGV 114

Query: 120 CTALAISNAITNLSATVFGELWRLEPLAPQKKAMWRREMQWLLCVSDSIVELVPSIQQFP 179
           CTALAISNAITNLSATVFGELWRLEPLAPQKKAMWRRE++WLLCVSDSIVEL+PSIQQFP
Sbjct: 115 CTALAISNAITNLSATVFGELWRLEPLAPQKKAMWRRELEWLLCVSDSIVELIPSIQQFP 174

Query: 180 GGGTYEVMATRPRSDLYMNLPALKKLDAMLIGMLDGFCETEFWYVDRGIVVGDGGDRDAF 239
           GGGTYE+M TRPRSDLY NLPALKKLDAMLI MLD F +TEFWY DRGIV+GD  D+D++
Sbjct: 175 GGGTYEIMETRPRSDLYANLPALKKLDAMLIDMLDAFSDTEFWYTDRGIVLGDC-DKDSY 233

Query: 240 SSMVPSGRPSVRHEEKWWLPCPKVPQNGLSEDVRKKLQQCRDCTNQILKAAMAINSSVLA 299
           +S       SVR E+KWWLPCPKVP NGLSE+ RKKLQQCRD  NQILKAA+AINS VLA
Sbjct: 234 NSPA-----SVRQEDKWWLPCPKVPPNGLSEEARKKLQQCRDFANQILKAALAINSGVLA 288

Query: 300 EMEIPAAYLETLPKNGKACLGDIIYRYITADQFSPECLLDCLDLSSEHHTLEVANRIEAA 359
           EMEIP  YLETLPK+GK CLG+IIY+Y+TA++FSPECLLDCLDLSSEH TLE+ANRIEAA
Sbjct: 289 EMEIPDPYLETLPKSGKECLGEIIYQYLTANKFSPECLLDCLDLSSEHQTLEIANRIEAA 348

Query: 360 VHVWKQKDQRKHLSHSKSRRSSWGGKVKGLVADSEKNHSLAHRAETLLHSLRLRFPGLPQ 419
           VHVW+QK+ R+H   +K + SSWGGKVKGLV D+E+N  L  RAETLL SLR+RFPGLPQ
Sbjct: 349 VHVWRQKNGRRHKKQAKLKLSSWGGKVKGLVNDNERNDFLVQRAETLLQSLRIRFPGLPQ 408

Query: 420 TALDMNKIQYNKDVGQSILESYSRVMESLAFNIMARIDDVLFVDDATKR-CAAAESISLF 478
           T LDMNKIQYNKDVGQSILESYSRVMES+AFNI ARIDDVL+VDDA +R  +  ES+SLF
Sbjct: 409 TTLDMNKIQYNKDVGQSILESYSRVMESMAFNITARIDDVLYVDDAMRRSISVTESLSLF 468

Query: 479 SRGGLSGLPIQKRMSPSPFSIQHTPYASPFGTPTFCSSTPVGGSPGRVPTAQKRSSLKEA 538
           S   ++GL  QK      FS+Q +P+ SPF TP    ++    SP R P      S+K  
Sbjct: 469 S---INGLNPQK-----AFSVQSSPHGSPFATPALSVAS---RSPRRAPPLY---SVKRN 514

Query: 539 PPRKLEKPCPAEFERVWSYAGNLSSRRVSGDAPERD 574
             R  EK    E E+ WSYAGNLSSRRV+G  PERD
Sbjct: 515 GTR--EKGIVGETEKAWSYAGNLSSRRVTGVTPERD 548

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	574
TAIR|locus:2121828	548	ROPGEF1 "ROP (rho of plants) g	0.926	0.970	0.655	9e-180
TAIR|locus:2185153	546	ROPGEF7 "ROP (rho of plants) g	0.764	0.804	0.574	1.2e-127
TAIR|locus:2153684	611	ROPGEF5 "ROP (rho of plants) g	0.773	0.726	0.526	1.7e-121
TAIR|locus:2078976	579	ROPGEF6 "ROP (rho of plants) g	0.728	0.721	0.521	2.3e-110
TAIR|locus:2126071	473	ROPGEF3 "ROP (rho of plants) g	0.621	0.754	0.552	1.8e-101
TAIR|locus:2198220	485	ROPGEF2 "ROP (rho of plants) g	0.642	0.760	0.529	4.1e-97
TAIR|locus:2050699	463	ROPGEF4 "ROP (rho of plants) g	0.641	0.794	0.491	1.5e-90
TAIR|locus:2028701	576	ROPGEF14 "ROP (rho of plants)	0.635	0.633	0.415	1.1e-76
TAIR|locus:2119320	517	ROPGEF9 "ROP (rho of plants) g	0.463	0.514	0.535	6.7e-72
TAIR|locus:2017844	515	ROPGEF12 "ROP (rho of plants)	0.449	0.500	0.534	2.9e-71

TAIR|locus:2121828 ROPGEF1 "ROP (rho of plants) guanine nucleotide exchange factor 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1745 (619.3 bits), Expect = 9.0e-180, P = 9.0e-180
 Identities = 368/561 (65%), Positives = 410/561 (73%)

Query:    16 ERCGXXXXXXXXXXXXXXXXXXXXGRRFDAEGASSSMTSSPRPVA-RXXXXXXXXXXXXX 74
             ERCG                      RFD EGASSS+ SSPR VA R             
Sbjct:    15 ERCGSYSPSADISESESSSSFSC--HRFDGEGASSSIPSSPRVVAGRGFYFPAPVMLPVI 72

Query:    75 XXKDVVVWDEKPEKSDTDLSEVEMMKERFAKLLLGEDMSGGGKGVCTALAISNAITNLSA 134
               KDVV WD+K  + D DLSE+EMMKERFAKLLLGEDMSGGGKGVCTALAISNAITNLSA
Sbjct:    73 GGKDVV-WDDK--QPDNDLSEIEMMKERFAKLLLGEDMSGGGKGVCTALAISNAITNLSA 129

Query:   135 TVFGELWRLEPLAPQKKAMWRREMQWLLCVSDSIVELVPSIQQFPGGGTYEVMATRPRSD 194
             TVFGELWRLEPLAPQKKAMWRRE++WLLCVSDSIVEL+PSIQQFPGGGTYE+M TRPRSD
Sbjct:   130 TVFGELWRLEPLAPQKKAMWRRELEWLLCVSDSIVELIPSIQQFPGGGTYEIMETRPRSD 189

Query:   195 LYMNLPALKKLDAMLIGMLDGFCETEFWYXXXXXXXXXXXXXXAFSSMVPSGRPSVRHEE 254
             LY NLPALKKLDAMLI MLD F +TEFWY              +++S  P+   SVR E+
Sbjct:   190 LYANLPALKKLDAMLIDMLDAFSDTEFWYTDRGIVLGDCDKD-SYNS--PA---SVRQED 243

Query:   255 KWWLPCPKVPQNGLSEDVRKKLQQCRDCTNQILKAAMAINSSVLAEMEIPAAYLETLPKN 314
             KWWLPCPKVP NGLSE+ RKKLQQCRD  NQILKAA+AINS VLAEMEIP  YLETLPK+
Sbjct:   244 KWWLPCPKVPPNGLSEEARKKLQQCRDFANQILKAALAINSGVLAEMEIPDPYLETLPKS 303

Query:   315 GKACLGDIIYRYITADQFSPECLLDCLDLSSEHHTLEVANRIEAAVHVWKQKDQXXXXXX 374
             GK CLG+IIY+Y+TA++FSPECLLDCLDLSSEH TLE+ANRIEAAVHVW+QK+       
Sbjct:   304 GKECLGEIIYQYLTANKFSPECLLDCLDLSSEHQTLEIANRIEAAVHVWRQKNGRRHKKQ 363

Query:   375 XXXXXXXWGGKVKGLVADSEKNHSLAHRAETLLHSLRLRFPGLPQTALDMNKIQYNKDVG 434
                    WGGKVKGLV D+E+N  L  RAETLL SLR+RFPGLPQT LDMNKIQYNKDVG
Sbjct:   364 AKLKLSSWGGKVKGLVNDNERNDFLVQRAETLLQSLRIRFPGLPQTTLDMNKIQYNKDVG 423

Query:   435 QSILESYSRVMESLAFNIMARIDDVLFVDDATKRC-AAAESISLFSRGGLSGLPIQKRMS 493
             QSILESYSRVMES+AFNI ARIDDVL+VDDA +R  +  ES+SLFS  GL+  P QK   
Sbjct:   424 QSILESYSRVMESMAFNITARIDDVLYVDDAMRRSISVTESLSLFSINGLN--P-QKA-- 478

Query:   494 PSPFSIQHTPYASPFGTPTFCSSTPVGGSPGRVPTAQKRSSLKEAPPRKLEKPCPAEFER 553
                FS+Q +P+ SPF TP    ++    SP R P      S+K    R  EK    E E+
Sbjct:   479 ---FSVQSSPHGSPFATPALSVASR---SPRRAPPLY---SVKRNGTR--EKGIVGETEK 527

Query:   554 VWSYAGNLSSRRVSGDAPERD 574
              WSYAGNLSSRRV+G  PERD
Sbjct:   528 AWSYAGNLSSRRVTGVTPERD 548

GO:0005089 "Rho guanyl-nucleotide exchange factor activity" evidence=IEA;IDA

GO:0005634 "nucleus" evidence=ISM

GO:0009860 "pollen tube growth" evidence=IMP

GO:0016324 "apical plasma membrane" evidence=IDA

GO:0000271 "polysaccharide biosynthetic process" evidence=RCA

GO:0007389 "pattern specification process" evidence=RCA

GO:0008356 "asymmetric cell division" evidence=RCA

GO:0008361 "regulation of cell size" evidence=RCA

GO:0009825 "multidimensional cell growth" evidence=RCA

GO:0009926 "auxin polar transport" evidence=RCA

GO:0009932 "cell tip growth" evidence=RCA

GO:0010015 "root morphogenesis" evidence=RCA

GO:0010075 "regulation of meristem growth" evidence=RCA

GO:0010817 "regulation of hormone levels" evidence=RCA

GO:0040007 "growth" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

GO:0071555 "cell wall organization" evidence=RCA

GO:0080092 "regulation of pollen tube growth" evidence=IGI

TAIR|locus:2185153 ROPGEF7 "ROP (rho of plants) guanine nucleotide exchange factor 7" [Arabidopsis thaliana (taxid:3702)]

 Score = 1253 (446.1 bits), Expect = 1.2e-127, P = 1.2e-127
 Identities = 261/454 (57%), Positives = 322/454 (70%)

Query:    83 DEKPEKSDTDLSEVEMMKERFAKLLLGEDMSGGGKGVCTALAISNAITNLSATVFGELWR 142
             ++K  +SD+ +SEVEMMKERF+KLLLGEDMSG G GVCTALAISNAITNL AT+FG+LWR
Sbjct:    58 EKKKIRSDSRVSEVEMMKERFSKLLLGEDMSGSGNGVCTALAISNAITNLCATLFGQLWR 117

Query:   143 LEPLAPQKKAMWRREMQWLLCVSDSIVELVPSIQQFPGGGTYEVMATRPRSDLYMNLPAL 202
             LEPL  +KK MWRREM+WLLCVSD IVE+ P+ Q FP G   E+M  RPRSDLY+NLPAL
Sbjct:   118 LEPLPTEKKEMWRREMEWLLCVSDHIVEMTPTWQTFPDGTKLEIMTCRPRSDLYVNLPAL 177

Query:   203 KKLDAMLIGMLDGFCETEFWYXXXXXXXXXXXXXXAFSSMVPSGRPSVRHEEKWWLPCPK 262
             +KLD ML+ +LD F ETEFWY              + SS   S +   R E+KWWLP P+
Sbjct:   178 RKLDNMLLEILDSFEETEFWYVDQGIMAHESAADGS-SSFRKSFQ---RQEDKWWLPVPR 233

Query:   263 VPQNGLSEDVRKKLQQCRDCTNQILKAAMAINSSVLAEMEIPAAYLETLPKNGKACLGDI 322
             V   GL E+ RK+LQ  RDCTNQILKAAMAINS  LA+MEIP +YLE+LP+ G++CLGD+
Sbjct:   234 VSPGGLQENSRKQLQHKRDCTNQILKAAMAINSITLADMEIPESYLESLPRKGRSCLGDL 293

Query:   323 IYRYITADQFSPECLLDCLDLSSEHHTLEVANRIEAAVHVWKQKDQXXXXXXXXXXXXXW 382
             IYRYI++DQFSPECLLDCLDLSSEH  +E+ANR+E+++++W ++               W
Sbjct:   294 IYRYISSDQFSPECLLDCLDLSSEHQAIEIANRVESSIYLWHKRTNSKPATNTKTS---W 350

Query:   383 GGKVKGLVADSEKNHSLAHRAETLLHSLRLRFPGLPQTALDMNKIQYNKDVGQSILESYS 442
                VK L+ D++K   +A RAE+LL SL+ RFPGLPQTALDM+KIQYNKD+G+SILESYS
Sbjct:   351 E-MVKELMVDADKLELMADRAESLLLSLKQRFPGLPQTALDMSKIQYNKDIGKSILESYS 409

Query:   443 RVMESLAFNIMARIDDVLFVDDATKRCAAAESISLFSRGGLSGLPIQKRMSPSPFSIQHT 502
             RV+ESLAFNI+ARIDD+LFVDD T+  +     +L    G +G    K ++  P S   T
Sbjct:   410 RVLESLAFNIVARIDDLLFVDDLTRHSSDQIPTTL----GNNGNDAPKSIAV-PVSNYTT 464

Query:   503 PYASPFGTPTFCSSTPVGGSPGRVPTAQKRSSLK 536
             P  SP       SS  V  SP R       SS+K
Sbjct:   465 PSYSP-SKQELRSSITVPPSPSRFKIPHS-SSVK 496

GO:0005089 "Rho guanyl-nucleotide exchange factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0005829 "cytosol" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2153684 ROPGEF5 "ROP (rho of plants) guanine nucleotide exchange factor 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 1195 (425.7 bits), Expect = 1.7e-121, P = 1.7e-121
 Identities = 245/465 (52%), Positives = 319/465 (68%)

Query:    77 KDVVVWDEKPEKS-DTDLSEVEMMKERFAKLLLGEDMSGGGKGVCTALAISNAITNLSAT 135
             K + + D+   K+ + + ++VEMMKERFAKLLLGEDMSG GKGVCTALAISNAITNL AT
Sbjct:    83 KKLTLHDDSGFKAKEMNSADVEMMKERFAKLLLGEDMSGSGKGVCTALAISNAITNLCAT 142

Query:   136 VFGELWRLEPLAPQKKAMWRREMQWLLCVSDSIVELVPSIQQFPGGGTYEVMATRPRSDL 195
             +FG+LWRLEPL+ +KK MWRREM+W+L VSD IVEL PS Q +P G  +EVM  RPR DL
Sbjct:   143 IFGQLWRLEPLSSEKKEMWRREMEWILSVSDHIVELTPSTQTYPDGNKFEVMTCRPRFDL 202

Query:   196 YMNLPALKKLDAMLIGMLDGFCETEFWYXXXXXXXXXXXXXXAFSSMVPSGRPSVRHEEK 255
             ++NLPAL+KLD ML+ +L  F +TEFWY              +F   +       R EEK
Sbjct:   203 FINLPALRKLDNMLLDILASFKKTEFWYVDQGIVASENDGSASFRRKIQ------RQEEK 256

Query:   256 WWLPCPKVPQNGLSEDVRKKLQQCRDCTNQILKAAMAINSSVLAEMEIPAAYLETLPKNG 315
             WWLP P++  NGL+E+ R +L   R+C  QILKAAMAINS  L EM++P +YLETLPKNG
Sbjct:   257 WWLPVPRLAPNGLTEEARTELNHKRECATQILKAAMAINSLALTEMDVPKSYLETLPKNG 316

Query:   316 KACLGDIIYRYITADQFSPECLLDCLDLSSEHHTLEVANRIEAAVHVWKQKDQXXXXXXX 375
             ++CLGD+IYRY+T+D+FS E LLDCLDLSSEH  L++ANR+EA+++VW+++ Q       
Sbjct:   317 RSCLGDVIYRYVTSDKFSAESLLDCLDLSSEHIALDIANRVEASIYVWRRRVQTKLGVNN 376

Query:   376 XXXXXX----WGGKVKGLVADSEKNHSLAHRAETLLHSLRLRFPGLPQTALDMNKIQYNK 431
                       W   VK L+A  +K   L  R+ETLL  L+ RFP L QT+LD++KIQ+NK
Sbjct:   377 NTSSTTPKLTWE-MVKELMAAGDKRGLLVERSETLLRCLKQRFPSLTQTSLDISKIQWNK 435

Query:   432 DVGQSILESYSRVMESLAFNIMARIDDVLFVDDATKRCAAAESISLFSRGGLSGLPIQKR 491
             D+G+SILESYSR +ESLA NI+ARIDD+L+VDD TK+   ++  +L S   +S +   K+
Sbjct:   436 DIGKSILESYSRALESLASNIIARIDDLLYVDDLTKQ---SDDNNLLSSPAVSSIIAHKK 492

Query:   492 MSPSPF--SIQHTPYASPFGT-PTFCSS--TPVGGSPGRVPTAQK 531
             + P P+  S   TPY + F T P F  S  +P  G   R P + K
Sbjct:   493 VVPLPYLISASGTPYRTSFSTTPGFSPSMISPKKGER-RTPYSSK 536

GO:0005089 "Rho guanyl-nucleotide exchange factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0010089 "xylem development" evidence=RCA

GO:0044036 "cell wall macromolecule metabolic process" evidence=RCA

TAIR|locus:2078976 ROPGEF6 "ROP (rho of plants) guanine nucleotide exchange factor 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 1090 (388.8 bits), Expect = 2.3e-110, P = 2.3e-110
 Identities = 230/441 (52%), Positives = 297/441 (67%)

Query:    91 TDLSEVEMMKERFAKLLLGEDMSGGGKGVCTALAISNAITNLSATVFGELWRLEPLAPQK 150
             T+ SE+E++KER AKLLLGEDMSG G+GVC ALAISNAITNL A + G+ WRLEP+  +K
Sbjct:   103 TETSEIELLKERMAKLLLGEDMSGSGEGVCPALAISNAITNLYAAILGQQWRLEPIPSEK 162

Query:   151 KAMWRREMQWLLCVSDSIVELVPSIQQFPGGGTYEVMATRPRSDLYMNLPALKKLDAMLI 210
             K MWRRE++ LL VSD IVELVPS Q FP G   EVM  RPRSDL+  LPAL+KLD MLI
Sbjct:   163 KLMWRREIEVLLSVSDHIVELVPSFQNFPNGNKIEVMNCRPRSDLFTCLPALRKLDNMLI 222

Query:   211 GMLDGFCETEFWYXXXXXXXXXXXXXXAFSSMVPSGRPSVRHEEKWWLPCPKVPQNGLSE 270
              +LD F ETEFWY              +F      G       +KWWLP P+VP +GL+E
Sbjct:   223 EILDSFGETEFWYVDQGIVAAESARSNSFRE---DG-------DKWWLPLPRVPSDGLTE 272

Query:   271 DVRKKLQQCRDCTNQILKAAMAINSSVLAEMEIPAAYLETLPKNGKACLGDIIYRYITAD 330
               RKKL   R+ TNQILKA M+INS  LAEME+P +YLE LPKNG++CLGD +YR IT+D
Sbjct:   273 QTRKKLDHTREFTNQILKACMSINSIALAEMEVPQSYLEALPKNGRSCLGDFLYRNITSD 332

Query:   331 QFSPECLLDCLDLSSEHHTLEVANRIEAAVHVWKQKDQXXXXXXXXXXXXX-WGGKVKGL 389
              FS + LL+ +DLSSE   +E+ANR+EA+++VW+++                WG  VK +
Sbjct:   333 NFSADHLLESIDLSSELAVVEMANRVEASMYVWRRRAHSRHLISLYRSTSTRWGMIVKEM 392

Query:   390 V---ADSEKNHSLAHRAETLLHSLRLRFPGLPQTALDMNKIQYNKDVGQSILESYSRVME 446
             +    D +K    A RAE+LL  L+ RFPGL QTALD +KIQYNKDVG+SILESYSRV+E
Sbjct:   393 MMHQTDGDKREIFAERAESLLIRLKQRFPGLRQTALDTSKIQYNKDVGKSILESYSRVLE 452

Query:   447 SLAFNIMARIDDVLFVDDATKRC------AAAESISLFSR---GGLSGLPIQKRMSPSPF 497
             SLA++I  RI++VLF+DD +K        + ++ + L S+    G SG   +K  +PS F
Sbjct:   453 SLAYSIGVRIEEVLFMDDISKDDGDGDDDSCSDKLRLLSKEAASGGSGSLREKLSAPSLF 512

Query:   498 SIQHTPYASPFGTPTFCSSTP 518
             S+  +  ++P+ T +F +STP
Sbjct:   513 SVSFSGTSTPYRTLSFSASTP 533

GO:0005089 "Rho guanyl-nucleotide exchange factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

TAIR|locus:2126071 ROPGEF3 "ROP (rho of plants) guanine nucleotide exchange factor 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 1006 (359.2 bits), Expect = 1.8e-101, P = 1.8e-101
 Identities = 207/375 (55%), Positives = 265/375 (70%)

Query:    95 EVEMMKERFAKLLLGEDMSGGGKGVCTALAISNAITNLSATVFGELWRLEPLAPQKKAMW 154
             E+E MKERFAKLLLGEDMSG GKGVCTA+ ISNAITNL ATVFG+  RLEPL  +K+A+W
Sbjct:   104 ELETMKERFAKLLLGEDMSGSGKGVCTAVTISNAITNLYATVFGQNLRLEPLETEKRALW 163

Query:   155 RREMQWLLCVSDSIVELVPSIQQFPGGGTYEVMATRPRSDLYMNLPALKKLDAMLIGMLD 214
             +REM  LL V D IVE +P  Q    G T EVM +RPR+D+Y+NLPAL+KLD+ML+  LD
Sbjct:   164 KREMNCLLSVCDYIVEFIPRCQNLSNGATVEVMESRPRADIYINLPALRKLDSMLMEALD 223

Query:   215 GFCETEFWYXXXXXXX--XXXXXXXAFSSMVPSGRPSVRHEEKWWLPCPKVPQNGLSEDV 272
              F  TEFWY                +F  ++       R EEKWWLP P VP  GLS+  
Sbjct:   224 SFQNTEFWYAEEGSLSMKSARSSTGSFRKVIVQ-----RKEEKWWLPVPLVPSEGLSDKA 278

Query:   273 RKKLQQCRDCTNQILKAAMAINSSVLAEMEIPAAYLETLPKNGKACLGDIIYRYITAD-Q 331
             RK+L+  R+ TNQI KAAMAINSS+L+EMEIP +Y+ TLPK GK+ +GD IYRY++   +
Sbjct:   279 RKQLKNKRESTNQIHKAAMAINSSILSEMEIPDSYMTTLPKCGKSSVGDSIYRYMSGSGR 338

Query:   332 FSPECLLDCLDLSSEHHTLEVANRIEAAVHVWKQKDQXXXXXXXXXXXXXWGGKVKGLVA 391
             F PE LLDCL++SSEH  +++A+R+EA+++ W++K               W   VK L++
Sbjct:   339 FFPEQLLDCLNISSEHEAVQLADRVEASMYTWRRKS------CLSNSKNSWN-MVKDLMS 391

Query:   392 DSE---KNHSLAHRAETLLHSLRLRFPGLPQTALDMNKIQYNKDVGQSILESYSRVMESL 448
              +E   KN+ +A RAETLL  L+ R+P L QT+LD+ KIQYNKDVG+++LESYSRV+E L
Sbjct:   392 TTERTDKNYVMAERAETLLFCLKQRYPELSQTSLDICKIQYNKDVGKAVLESYSRVLEGL 451

Query:   449 AFNIMARIDDVLFVD 463
             AFNI+A IDDVL+VD
Sbjct:   452 AFNIVAWIDDVLYVD 466

GO:0005089 "Rho guanyl-nucleotide exchange factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

TAIR|locus:2198220 ROPGEF2 "ROP (rho of plants) guanine nucleotide exchange factor 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 965 (344.8 bits), Expect = 4.1e-97, P = 4.1e-97
 Identities = 205/387 (52%), Positives = 262/387 (67%)

Query:    83 DEKPEKSDTDLSEVEMMKERFAKLLLGEDMSGGGKGVCTALAISNAITNLSATVFGELWR 142
             DE     +    E+E MKERF+KLLLGEDMSG GKGVCTA+ ISNAITNL ATVFG+  R
Sbjct:   104 DEHLAVQEISEPELETMKERFSKLLLGEDMSGSGKGVCTAVTISNAITNLYATVFGQNLR 163

Query:   143 LEPLAPQKKAMWRREMQWLLCVSDSIVELVPSIQQFPGGGTYEVMATRPRSDLYMNLPAL 202
             LEPL  ++K  W+REM  LL V D I E +P  Q    G T EVM +RPR+D+Y+NLPAL
Sbjct:   164 LEPLEIEQKTTWKREMNCLLSVCDYIFEFIPKSQNLSNGATVEVMESRPRADIYINLPAL 223

Query:   203 KKLDAMLIGMLDGFCETEFWYXXXXXXX--XXXXXXXAFSSMVPSGRPSVRHEEKWWLPC 260
             +KLD+ML+  LD F +TEFWY                +F  ++       R EEKWWLP 
Sbjct:   224 RKLDSMLMEALDSFQKTEFWYAEEGSLSMKSTRSATGSFRKVIVQ-----RKEEKWWLPI 278

Query:   261 PKVPQNGLSEDVRKKLQQCRDCTNQILKAAMAINSSVLAEMEIPAAYLETLPKNGKACLG 320
             P VP  GLSE  RK+L+  R+ TNQI KAAMAINSS+L EM+IP +Y+ TLPK+GKA  G
Sbjct:   279 PLVPLQGLSEKARKQLKSKRESTNQIHKAAMAINSSILGEMDIPDSYMATLPKSGKASTG 338

Query:   321 DIIYRYITAD-QFSPECLLDCLDLSSEHHTLEVANRIEAAVHVWKQKDQXXXXXXXXXXX 379
             D IYR++T+  +FSPE LLD L + SEH  L++A+R+EA+++ W++K             
Sbjct:   339 DAIYRHMTSSGRFSPEKLLDRLKIVSEHEALQLADRVEASMYTWRRK------ACLNNSK 392

Query:   380 XXWGGKVKGLVA---DSEKNHSLAHRAETLLHSLRLRFPGLPQTALDMNKIQYNKDVGQS 436
               W   VK L++    S+KN+ LA RAE+LL  L+ R+P L QT+LD+ KI  NKDVG++
Sbjct:   393 SSWN-MVKDLMSITERSDKNYVLAERAESLLFCLKQRYPELSQTSLDICKIHCNKDVGKA 451

Query:   437 ILESYSRVMESLAFNIMARIDDVLFVD 463
             +LESYSRV+E LAFNI+A IDDVL+VD
Sbjct:   452 VLESYSRVLEGLAFNIVAWIDDVLYVD 478

GO:0005089 "Rho guanyl-nucleotide exchange factor activity" evidence=IEA;IDA

GO:0005634 "nucleus" evidence=ISM

TAIR|locus:2050699 ROPGEF4 "ROP (rho of plants) guanine nucleotide exchange factor 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 903 (322.9 bits), Expect = 1.5e-90, P = 1.5e-90
 Identities = 192/391 (49%), Positives = 261/391 (66%)

Query:    83 DEKPEKSDTDLSE---VEMMKERFAKLLLGEDMSGGGKGVCTALAISNAITNLSATVFGE 139
             D   E SD D +E   +EMM+ERFAKLLLGEDMSG GKGVCTA+ +SN+ITNL ATVFG+
Sbjct:    78 DGDEEDSDIDSAEDAELEMMRERFAKLLLGEDMSGSGKGVCTAVTVSNSITNLYATVFGQ 137

Query:   140 LWRLEPLAPQKKAMWRREMQWLLCVSDSIVELVPSIQQFPGGGTYEVMATRPRSDLYMNL 199
               RL+PL+ +KK +W+REM   + + D IVE++P       G   E+  T+ RSD+ M+L
Sbjct:   138 SLRLQPLSTEKKDLWKREMNCFMSICDYIVEVIPRSL----GTNVEITETKLRSDILMSL 193

Query:   200 PALKKLDAMLIGMLDGFCETEFWYXXXXXXXXXXXXXXAFSSMVPSGRPSV--RHEEKWW 257
             PAL+KLD ML+ +LD F E EFWY                S      R  V  R +EKWW
Sbjct:   194 PALRKLDNMLMEILDSFTENEFWYVERGSSSMNSGGGGRDSGTF---RKVVVQRKDEKWW 250

Query:   258 LPCPKVPQNGLSEDVRKKLQQCRDCTNQILKAAMAINSSVLAEMEIPAAYLETLPKNGKA 317
             LP P VP  GLSE+ RK L+  RDC +QI KAA+AIN S L +M+IP +YL TLPK+GKA
Sbjct:   251 LPVPCVPAEGLSEEERKHLRHKRDCASQIHKAALAINDSTLNDMDIPDSYLTTLPKSGKA 310

Query:   318 CLGDIIYRYI-TADQFSPECLLDCLDLSSEHHTLEVANRIEAAVHVWKQKDQXXXXXXXX 376
              +GD+IY+ + TA++F P+ LLD L ++SEH  LE+A+++EA++  W++K          
Sbjct:   311 SVGDVIYKQLCTAEKFYPDQLLDILKITSEHEALELADKVEASLVTWRRK-----TGGLT 365

Query:   377 XXXXXWGGKVKGLVADSE----KNHSLAHRAETLLHSLRLRFPGLPQTALDMNKIQYNKD 432
                  W   +K +  D++    KNH LA RA +LL  L+ R+P L QT+LD+ KIQ+N+D
Sbjct:   366 HSKSSWD-MMKDISGDADRGNDKNHILAARARSLLFCLKQRYPELSQTSLDICKIQFNRD 424

Query:   433 VGQSILESYSRVMESLAFNIMARIDDVLFVD 463
             VG+++LESYSRV+E LA+N+++ IDDVL+VD
Sbjct:   425 VGKAVLESYSRVLEGLAYNVVSWIDDVLYVD 455

GO:0005089 "Rho guanyl-nucleotide exchange factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0005886 "plasma membrane" evidence=IDA

GO:0048767 "root hair elongation" evidence=IMP

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

GO:0045492 "xylan biosynthetic process" evidence=RCA

GO:0009531 "secondary cell wall" evidence=IDA

GO:0009664 "plant-type cell wall organization" evidence=IMP

TAIR|locus:2028701 ROPGEF14 "ROP (rho of plants) guanine nucleotide exchange factor 14" [Arabidopsis thaliana (taxid:3702)]

 Score = 772 (276.8 bits), Expect = 1.1e-76, P = 1.1e-76
 Identities = 158/380 (41%), Positives = 229/380 (60%)

Query:    84 EKPEKSDTDLSEVEMMKERFAKLLLGEDMSGGGKGVCTALAISNAITNLSATVFGELWRL 143
             EKP      L +VE MKE+F+KLLLGED++GG KGV  ALA+SNA+T+L+ ++FGELW+L
Sbjct:   126 EKPGYVYCHL-DVEAMKEKFSKLLLGEDVTGGCKGVQVALALSNAVTHLATSIFGELWKL 184

Query:   144 EPLAPQKKAMWRREMQWLLCVSDSIVELVPSIQQFPGGGTYEVMATRPRSDLYMNLPALK 203
             EPL  +KK  WRREM WLL  ++ ++ELVPS Q    G + E+M  + R+D++MNLPAL+
Sbjct:   185 EPLCEEKKQKWRREMDWLLSPTNYMIELVPSKQNDANGRSLEIMTPKARADIHMNLPALQ 244

Query:   204 KLDAMLIGMLDGFCETEFWYXXXXXXXXXXXXXXAFSSMVPSGRPSVRHEEKWWLPCPKV 263
             KLD+MLI  LD    TEFWY                 S       S    ++WWLP P+V
Sbjct:   245 KLDSMLIETLDSMVNTEFWYSE-------------IGSRAEGKNKSTSESKRWWLPSPQV 291

Query:   264 PQNGLSEDVRKKLQQCRDCTNQILKAAMAINSSVLAEMEIPAAYLETLPKNGKACLGDII 323
             P+ GLS   RKKL        Q+ KA  AIN ++L EM +P    E +PK+GK  LGD +
Sbjct:   292 PKPGLSNSGRKKLLDKGKVVYQVFKATKAINENILLEMPVPIVIKEAIPKSGKNSLGDEL 351

Query:   324 YRYITADQFSPECLLDCLDLSSEHHTLEVANRIEAAVHVWKQKDQXXXXXXXXXXXXXWG 383
             Y+ +  +  + + +   L+L +EH  LE  N++E+A+  WK++               W 
Sbjct:   352 YKMLAVESATVDEIFISLNLGTEHAALETVNKLESAMFAWKERITEQGSNGKSPVRASWS 411

Query:   384 GKVKGLVADSEKNHSLAHRAETLLHSLRLRFPGLPQTALDMNKIQYNKDVGQSILESYSR 443
                K  +++  +N SL +RAE L   ++ + P LP + LD  KIQY+KD+G ++LE+YSR
Sbjct:   412 F-AKDPLSEIGRNESLLNRAEALRTQIKSKHPNLPHSFLDATKIQYDKDIGHAVLEAYSR 470

Query:   444 VMESLAFNIMARIDDVLFVD 463
              + +LAF I++R+ ++L  D
Sbjct:   471 TLANLAFRILSRMGEILKED 490

GO:0005089 "Rho guanyl-nucleotide exchange factor activity" evidence=IEA;ISS

GO:0005739 "mitochondrion" evidence=ISM

GO:0019344 "cysteine biosynthetic process" evidence=RCA

GO:0080092 "regulation of pollen tube growth" evidence=IGI

TAIR|locus:2119320 ROPGEF9 "ROP (rho of plants) guanine nucleotide exchange factor 9" [Arabidopsis thaliana (taxid:3702)]

 Score = 727 (261.0 bits), Expect = 6.7e-72, P = 6.7e-72
 Identities = 150/280 (53%), Positives = 191/280 (68%)

Query:    88 KSDTDLSEVEMMKERFAKLLLGEDMSGGGKGVCTALAISNAITNLSATVFGELWRLEPLA 147
             + D   SE EMMK+RF KLLLGEDMSGGGKGV +ALA+SNAITNL+A++FGE  +L+P+A
Sbjct:    67 RQDKQQSETEMMKDRFTKLLLGEDMSGGGKGVSSALALSNAITNLAASIFGEQTKLQPMA 126

Query:   148 PQKKAMWRREMQWLLCVSDSIVELVPSIQQFPGGGTYEVMATRPRSDLYMNLPALKKLDA 207
             P ++A W++E+ WLL V+D IVE VPS Q    G   E+M TR R DL MN+PAL+KLDA
Sbjct:   127 PDRRARWKKEIDWLLSVTDHIVEFVPSQQISKEGVCTEIMVTRQRGDLLMNIPALRKLDA 186

Query:   208 MLIGMLDGFC-ETEFWYXXXXXXXXXXXXXXAFSSMVPSGRPSVRHEEKWWLPCPKVPQN 266
             MLI  LD F    EFWY                S      R + R ++KWWLP  KVP N
Sbjct:   187 MLIDTLDNFRGHNEFWYVSRD------------SEEGKQAR-NERTKDKWWLPPVKVPPN 233

Query:   267 GLSEDVRKKLQQCRDCTNQILKAAMAINSSVLAEMEIPAAYLETLPKNGKACLGDIIYRY 326
             GLSE  R+ L   +D  +Q+ KAAMAIN+ VL+EM IP +Y+E+LPKNG+  LGD +Y+ 
Sbjct:   234 GLSESARRMLHFQKDSVSQVQKAAMAINAQVLSEMAIPDSYIESLPKNGRVSLGDSLYKS 293

Query:   327 ITADQFSPECLLDCLDLSSEHHTLEVANRIEAAVHVWKQK 366
             IT + F PE  L  LDLS+EH  L+V NRIEA++ +WK+K
Sbjct:   294 ITEEWFDPEQFLSTLDLSTEHKVLDVKNRIEASIVIWKRK 333

GO:0005089 "Rho guanyl-nucleotide exchange factor activity" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

GO:0010048 "vernalization response" evidence=RCA

GO:0048610 "cellular process involved in reproduction" evidence=RCA

GO:0048868 "pollen tube development" evidence=RCA

GO:0080092 "regulation of pollen tube growth" evidence=IGI

TAIR|locus:2017844 ROPGEF12 "ROP (rho of plants) guanine nucleotide exchange factor 12" [Arabidopsis thaliana (taxid:3702)]

 Score = 721 (258.9 bits), Expect = 2.9e-71, P = 2.9e-71
 Identities = 147/275 (53%), Positives = 197/275 (71%)

Query:    93 LSEVEMMKERFAKLLLGEDMSGGGKGVCTALAISNAITNLSATVFGELWRLEPLAPQKKA 152
             L+++E MKERF+KLLLGED SGGGKGV +ALA+SNAITNL+A+VFGE  RLEP+  +++A
Sbjct:    90 LADMEQMKERFSKLLLGEDNSGGGKGVSSALALSNAITNLAASVFGEQRRLEPMPAERRA 149

Query:   153 MWRREMQWLLCVSDSIVELVPSIQQFPGGGTYEVMATRPRSDLYMNLPALKKLDAMLIGM 212
              WR+E+ WLL V+D +VE  PS Q+   G   E+M TR R+DL+MN+PALKKLDAMLI  
Sbjct:   150 RWRKEIDWLLSVTDYVVEFAPSQQKNKDGTNMEIMTTRQRTDLHMNIPALKKLDAMLIDC 209

Query:   213 LDGFCE-TEFWYXXXXXXXXXXXXXXAFSSMVPSGRPSVRHEEKWWLPCPKVPQNGLSED 271
             L+ F + +EF Y                 S    G+   R++EKWW+P  KVP +GLSE 
Sbjct:   210 LENFKDQSEFSYISK-------------DSPDLDGK---RNDEKWWIPTVKVPPDGLSEA 253

Query:   272 VRKKLQQCRDCTNQILKAAMAINSSVLAEMEIPAAYLETLPKNGKACLGDIIYRYITADQ 331
              R+ LQ  +DC NQ+LKAAMAIN+ VL EMEIP +Y+++LPKNG+A LGD +Y+ IT D 
Sbjct:   254 SRRFLQYQKDCVNQVLKAAMAINAQVLFEMEIPESYIDSLPKNGRASLGDQMYKNITVDF 313

Query:   332 FSPECLLDCLDLSSEHHTLEVANRIEAAVHVWKQK 366
             F P+  L  +D+SSEH  +++ NRIEA++ +WK+K
Sbjct:   314 FDPDQFLSSMDMSSEHKIVDLKNRIEASIIIWKRK 348

GO:0005089 "Rho guanyl-nucleotide exchange factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0009793 "embryo development ending in seed dormancy" evidence=IMP

GO:0005886 "plasma membrane" evidence=IDA

GO:0009860 "pollen tube growth" evidence=IEP

GO:0090406 "pollen tube" evidence=IDA

GO:0080092 "regulation of pollen tube growth" evidence=IGI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q93ZY2	ROGF1_ARATH	No assigned EC number	0.7170	0.9512	0.9963	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh4_pm.C_LG_IX000143 hypothetical protein (577 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	574
pfam03759	360	pfam03759, PRONE, PRONE (Plant-specific Rop nucleo	0.0

>gnl|CDD|217715 pfam03759, PRONE, PRONE (Plant-specific Rop nucleotide exchanger)

 Score =  671 bits (1733), Expect = 0.0
 Identities = 264/376 (70%), Positives = 301/376 (80%), Gaps = 19/376 (5%)

Query: 92  DLSEVEMMKERFAKLLLGEDMSGGGKGVCTALAISNAITNLSATVFGELWRLEPLAPQKK 151
             SE+E+MKERFAKLLLGEDMSGGGKGV TALA+SNAITNL+ATVFGELWRLEPLAP+KK
Sbjct: 1   LPSEMELMKERFAKLLLGEDMSGGGKGVSTALALSNAITNLAATVFGELWRLEPLAPEKK 60

Query: 152 AMWRREMQWLLCVSDSIVELVPSIQQFPGGGTYEVMATRPRSDLYMNLPALKKLDAMLIG 211
           AMWRREM WLL V+D IVE VPS Q  P G T EVM TRPRSDLYMNLPAL+KLDAML+ 
Sbjct: 61  AMWRREMDWLLSVTDYIVEFVPSKQTLPDGTTMEVMTTRPRSDLYMNLPALRKLDAMLLE 120

Query: 212 MLDGFCETEFWYVDRGIVVGDGGDRDAFSSMVPSGRPSVRHEEKWWLPCPKVPQNGLSED 271
           +LD F +TEFWYVD+G +                 R S R EEKWWLP PKVP  GLSE 
Sbjct: 121 ILDSFKDTEFWYVDQGSL-------------SSFRRKSQRQEEKWWLPVPKVPPGGLSES 167

Query: 272 VRKKLQQCRDCTNQILKAAMAINSSVLAEMEIPAAYLETLPKNGKACLGDIIYRYITADQ 331
            RKKLQ  RDC NQILKAAMAINS VLAEMEIP +Y+E+LPKNG+A LGD IYRYIT+DQ
Sbjct: 168 SRKKLQHKRDCVNQILKAAMAINSQVLAEMEIPESYIESLPKNGRASLGDAIYRYITSDQ 227

Query: 332 FSPECLLDCLDLSSEHHTLEVANRIEAAVHVWKQKDQRKHLSHSKSRRSSWGGKVKGLVA 391
           FSP+ LLDCLDLSSEH  LE+ANRIEA++++W++K      +H+K  +SSWG  VK L+A
Sbjct: 228 FSPDQLLDCLDLSSEHKALELANRIEASMYIWRRK------AHTKDSKSSWGSAVKDLMA 281

Query: 392 DSEKNHSLAHRAETLLHSLRLRFPGLPQTALDMNKIQYNKDVGQSILESYSRVMESLAFN 451
           D EK   LA RAETLL  L+ RFPGLPQT+LD++KIQYNKDVGQ+ILESYSRV+ESLAFN
Sbjct: 282 DGEKRELLAERAETLLLCLKQRFPGLPQTSLDISKIQYNKDVGQAILESYSRVLESLAFN 341

Query: 452 IMARIDDVLFVDDATK 467
           IM+RIDDVL+ DD  K
Sbjct: 342 IMSRIDDVLYADDLAK 357

This is a functional guanine exchange factor (GEF) of plant Rho GTPase. Length = 360

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	574
PF03759	365	PRONE: PRONE (Plant-specific Rop nucleotide exchan	100.0

>PF03759 PRONE: PRONE (Plant-specific Rop nucleotide exchanger); InterPro: IPR005512 In plants, the small GTP-binding proteins called Rops work as signalling switches that control growth, development and plant responses to various environmental stimuli

Probab=100.00  E-value=4.1e-202  Score=1499.20  Aligned_cols=364  Identities=74%  Similarity=1.162  Sum_probs=290.2

Q ss_pred             hhHHHHHHHHHHHhhhccCCCCCCcchhhHHHHHHHHhHhHHhhhccccccCCCchhHHhhhhhhcceeeeccceeEEee
Q 008192           93 LSEVEMMKERFAKLLLGEDMSGGGKGVCTALAISNAITNLSATVFGELWRLEPLAPQKKAMWRREMQWLLCVSDSIVELV  172 (574)
Q Consensus        93 ~se~E~MKERFaKLLLGEDMSGggKGV~tALAiSNAITNL~AtVFGelwrLEPL~~ekK~mWrREmdwLLSVsD~IVElv  172 (574)
                      .+|+||||||||||||||||||||||||||||||||||||||||||||||||||++|||+||||||||||||||||||||
T Consensus         2 ~se~e~mKErFaKLLLGEDmSG~gkGV~tAlAiSNAITNL~AtvFGe~~rLEPl~~ekk~~WrrEm~wLLsv~d~iVE~v   81 (365)
T PF03759_consen    2 PSEVEMMKERFAKLLLGEDMSGGGKGVCTALAISNAITNLAATVFGELWRLEPLSPEKKAMWRREMDWLLSVTDYIVELV   81 (365)
T ss_dssp             HHHHHHHHHHHHHHHTTTBTTSSS-S--HHHHHHHHHHHHHHHHHTT--SSS---HHHHHHHHHHHHHHHGGGGG-EEEE
T ss_pred             chHHHHHHHHHHHHhccCCCCCCCCcccHHHHHHHHHHHHHHHHhhhhhccCCCChHHHHHHHHhcceeecchhhhhhcc
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ecccccCCCceEEeeccccccccccCchhHHHHHHHHHHHhhccCCCeeEEEeCCccccCCCCCCCCCCCCCCCCCcccc
Q 008192          173 PSIQQFPGGGTYEVMATRPRSDLYMNLPALKKLDAMLIGMLDGFCETEFWYVDRGIVVGDGGDRDAFSSMVPSGRPSVRH  252 (574)
Q Consensus       173 Ps~Q~~~dG~~~EVM~~rpRsDl~~NLPALrKLD~MLle~LDsF~dtEFWYvd~g~~a~~~~~~~~~~~s~s~r~~~~R~  252 (574)
                      |++|++|||+++|||+||||+|||||||||||||+||||+||||+|||||||++|+++ ++++      ++++|+..+||
T Consensus        82 Ps~Q~~~dG~~~EvM~~r~RsDl~~NlPALrKLD~MLie~LDsf~dtEFwYv~~g~~~-~~~~------~~~~~~~~~r~  154 (365)
T PF03759_consen   82 PSKQTFPDGTTMEVMTTRPRSDLYMNLPALRKLDAMLIEILDSFKDTEFWYVDQGIVA-DSDS------SSSFRRSSQRQ  154 (365)
T ss_dssp             EEEEE-TTS-EEEEEEEEE-HHHHTHHHHHHHHHHHHHHHHHTTCS-SSEE--TT-------S------HHHHT------
T ss_pred             cceeecCCCceEEEEecCccchhhcCcHHHHHHHHHHHHHHHhCCCCeeEEecCCccc-cccc------CccccCccccc
Confidence            9999999999999999999999999999999999999999999999999999999988 4443      67899999999


Q ss_pred             CccccccCCCCCCCCCCHHHHHHhhhhhhhHHHHHHHHHHhhhhhhccCCCcHHHHhhcccCCccchhHHHHHHhhcCCC
Q 008192          253 EEKWWLPCPKVPQNGLSEDVRKKLQQCRDCTNQILKAAMAINSSVLAEMEIPAAYLETLPKNGKACLGDIIYRYITADQF  332 (574)
Q Consensus       253 eeKWWLP~P~VPp~GLSe~~RK~L~~qrd~~nQIlKAAmAINs~vL~EMeVPe~y~esLPKnGrasLGD~iYr~iT~d~F  332 (574)
                      ++|||||+|||||+||||++||+|||||||||||||||||||++||+|||||++|+|+||||||+||||.|||+||+|+|
T Consensus       155 ~~KWWLP~p~VP~~GLse~~rK~L~~~rd~~~QilKAAmaIN~~vL~EMeiP~~y~esLPKnGrasLGd~iYr~it~~~F  234 (365)
T PF03759_consen  155 EEKWWLPVPRVPPNGLSEESRKWLQHQRDCVNQILKAAMAINSQVLAEMEIPESYLESLPKNGRASLGDSIYRYITSEQF  234 (365)
T ss_dssp             CCCTTS--EE--TT---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS---HHHHHCS-SSHHHHHHHHHHHHCTSSS-
T ss_pred             CCcccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHhcccccHHHHHHHHhccCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ChhhHhhhcCCCchhhHHHHhhhhHHHHHHHHHhhhcccccCCCCCCCCccccccccccchhhHHHHHHHHHHHHHHHHh
Q 008192          333 SPECLLDCLDLSSEHHTLEVANRIEAAVHVWKQKDQRKHLSHSKSRRSSWGGKVKGLVADSEKNHSLAHRAETLLHSLRL  412 (574)
Q Consensus       333 spe~lL~~ldLssEH~aLe~aNRiEAai~vWrrK~~~k~~~~~~~~ksSWg~~Vkd~~~d~dK~e~laeRAEtlL~~LKq  412 (574)
                      ||||||+||||||||+|||+||||||||||||||++++      ++|+|||++|||++++.|||++|++|||+||+||||
T Consensus       235 spe~ll~~ldlssEH~~le~~NRvEAai~vWrrK~~~k------~~ksSWg~~vkdl~~~~dK~e~l~eRAEtlL~~LK~  308 (365)
T PF03759_consen  235 SPEQLLDCLDLSSEHKALELANRVEAAIYVWRRKICEK------DSKSSWGSMVKDLMSDGDKRELLAERAETLLLCLKQ  308 (365)
T ss_dssp             -HHHHHHTS--SSHHHHHHHHHHHHHHHHHHCH---------------------------HHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHhcCC------CCccchhhhcccccccchHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999987      579999999999999999999999999999999999


Q ss_pred             hCCCCCcchhhhhhhhhcchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccccc
Q 008192          413 RFPGLPQTALDMNKIQYNKDVGQSILESYSRVMESLAFNIMARIDDVLFVDDATKRC  469 (574)
Q Consensus       413 RfPgLpQT~LD~sKIQyNKDVG~aILESYSRVLEsLAfnI~sRIdDVL~~D~l~k~~  469 (574)
                      ||||||||+||++|||||||||||||||||||||||||||++|||||||+|++++++
T Consensus       309 RfPgl~QT~LD~~KIQyNkDVG~aILESYSRVLEsLAfnI~sRIdDVL~~D~~~~~~  365 (365)
T PF03759_consen  309 RFPGLPQTSLDISKIQYNKDVGQAILESYSRVLESLAFNILSRIDDVLYADDLTKNS  365 (365)
T ss_dssp             HSTT----HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred             hCCCCCchHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCC
Confidence            999999999999999999999999999999999999999999999999999999863

Rop proteins (Rho of plants, Rac-like and atRac in Arabidopsis thaliana (Mouse-ear cress)) belong to the Rho family of Ras-related GTP-binding proteins that turn on signalling pathways by switching from a GDP-bound inactive to a GTP-bound active conformation. Activation depends on guanine nucleotide exchange factors (GEFs) that catalyse the otherwise slow GDP dissociation for subsequent GTP binding. The plant-specific RopGEFs represent a unique family of exchange factor that display no homology to any known RhoGEFs from animals and fungi. They comprise a highly conserved catalytic domain termed PRONE (plant-specific Rop nucleotide exchanger) with exclusive substrate specificity for members of the Rop family. The PRONE domain has been shown to be necessary and sufficient to promote nucleotide release from Rop [, , ]. The PRONE domain can be divided into three highly conserved subdomains separated by two short stretches of variable amino acid residues [, ]. It is approximately 370 residues in length and displays an almost all alpha-helical structure except for a beta-turn that protrudes from the main body of the molecule. The overall structure of the PRONE domain can be divided into two subdomains, the first one including helices alpha1-5 and alpha13, the second alpha6-12 [].; GO: 0005089 Rho guanyl-nucleotide exchange factor activity; PDB: 2NTX_B 2NTY_B 2WBL_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	574
2nty_A	365	Rop4-Gdp-Prone8 Length = 365		1e-103
2ntx_A	365	Prone8 Length = 365		3e-90

>pdb|2NTY|A Chain A, Rop4-Gdp-Prone8 Length = 365

Iteration: 1
 Score =  373 bits (958), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 190/378 (50%), Positives = 251/378 (66%), Gaps = 25/378 (6%)
Query: 87  EKSDTDLSEVEMMKERFAKLLLGEDMSGGGKGVCTALAISNAITNLSATVFGELWRLEPL 146
           ++S+   +++EMMK+RFAKLLLGEDMSGGGKGV +ALA+SNAITNL+A++FGE  +L+P+
Sbjct: 2   KRSERQQADMEMMKDRFAKLLLGEDMSGGGKGVSSALALSNAITNLAASIFGEQTKLQPM 61
Query: 147 APQKKAMWRREMQWLLCVSDSIVELVPSIQQFPGGGTYEVMATRPRSDLYMNLPALKKLD 206
              ++A W++E+ WLL V+D IVE VPS Q    G   E+M TR R DL MN+PAL+KLD
Sbjct: 62  PQDRQARWKKEIDWLLSVTDHIVEFVPSQQTSKDGVCTEIMVTRQRGDLLMNIPALRKLD 121
Query: 207 AMLIGMLDGF-CETEFWYXXXXXXXXXXXXXXAFSSMVPSGRPSVRHEEKWWLPCPKVPQ 265
           AMLI  LD F    EFWY                           R  +KWWLP  KVP 
Sbjct: 122 AMLIDTLDNFRGHNEFWYVSRDSEEGQQARND-------------RTNDKWWLPPVKVPP 168
Query: 266 NGLSEDVRKKLQQCRDCTNQILKAAMAINSSVLAEMEIPAAYLETLPKNGKACLGDIIYR 325
            GLSE  R+ L   +D   Q+ KAAMAIN+ VL+EMEIP +Y+++LPKNG+A LGD IY+
Sbjct: 169 GGLSEPSRRMLYFQKDSVTQVQKAAMAINAQVLSEMEIPESYIDSLPKNGRASLGDSIYK 228
Query: 326 YITADQFSPECLLDCLDLSSEHHTLEVANRIEAAVHVWKQKDQXXXXXXXXXXXXXWGGK 385
            IT + F PE  L  LD+S+EH  L++ NRIEA+V +WK+K               WG  
Sbjct: 229 SITEEWFDPEQFLAMLDMSTEHKVLDLKNRIEASVVIWKRK------LHTKDTKSSWGSA 282
Query: 386 VKGLVADSEKNHSLAHRAETLLHSLRLRFPGLPQTALDMNKIQYNKDVGQSILESYSRVM 445
           V       EK      RAET+L  L+ +FPGLPQ++LD++KIQ+NKDVGQ++LESYSR++
Sbjct: 283 VS-----LEKRELFEERAETILVLLKQKFPGLPQSSLDISKIQFNKDVGQAVLESYSRIL 337
Query: 446 ESLAFNIMARIDDVLFVD 463
           ESLA+ +M+RI+DVL+ D
Sbjct: 338 ESLAYTVMSRIEDVLYTD 355

>pdb|2NTX|A Chain A, Prone8 Length = 365

Iteration: 1
 Score =  329 bits (843), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 181/378 (47%), Positives = 239/378 (63%), Gaps = 25/378 (6%)
Query: 87  EKSDTDLSEVEMMKERFAKLLLGEDMSGGGKGVCTALAISNAITNLSATVFGELWRLEPL 146
           ++S+   ++ E  K+RFAKLLLGED SGGGKGV +ALA+SNAITNL+A++FGE  +L+P 
Sbjct: 2   KRSERQQADXEXXKDRFAKLLLGEDXSGGGKGVSSALALSNAITNLAASIFGEQTKLQPX 61
Query: 147 APQKKAMWRREMQWLLCVSDSIVELVPSIQQFPGGGTYEVMATRPRSDLYMNLPALKKLD 206
              ++A W++E+ WLL V+D IVE VPS Q    G   E+  TR R DL  N+PAL+KLD
Sbjct: 62  PQDRQARWKKEIDWLLSVTDHIVEFVPSQQTSKDGVCTEIXVTRQRGDLLXNIPALRKLD 121
Query: 207 AMLIGMLDGF-CETEFWYXXXXXXXXXXXXXXAFSSMVPSGRPSVRHEEKWWLPCPKVPQ 265
           A LI  LD F    EFWY                           R  +KWWLP  KVP 
Sbjct: 122 AXLIDTLDNFRGHNEFWYVSRDSEEGQQARND-------------RTNDKWWLPPVKVPP 168
Query: 266 NGLSEDVRKKLQQCRDCTNQILKAAMAINSSVLAEMEIPAAYLETLPKNGKACLGDIIYR 325
            GLSE  R+ L   +D   Q+ KAA AIN+ VL+E EIP +Y+++LPKNG+A LGD IY+
Sbjct: 169 GGLSEPSRRXLYFQKDSVTQVQKAAXAINAQVLSEXEIPESYIDSLPKNGRASLGDSIYK 228
Query: 326 YITADQFSPECLLDCLDLSSEHHTLEVANRIEAAVHVWKQKDQXXXXXXXXXXXXXWGGK 385
            IT + F PE  L  LD S+EH  L++ NRIEA+V +WK+K               WG  
Sbjct: 229 SITEEWFDPEQFLAXLDXSTEHKVLDLKNRIEASVVIWKRK------LHTKDTKSSWGSA 282
Query: 386 VKGLVADSEKNHSLAHRAETLLHSLRLRFPGLPQTALDMNKIQYNKDVGQSILESYSRVM 445
           V       EK      RAET+L  L+ +FPGLPQ++LD++KIQ+NKDVGQ++LESYSR++
Sbjct: 283 VS-----LEKRELFEERAETILVLLKQKFPGLPQSSLDISKIQFNKDVGQAVLESYSRIL 337
Query: 446 ESLAFNIMARIDDVLFVD 463
           ESLA+ + +RI+DVL+ D
Sbjct: 338 ESLAYTVXSRIEDVLYTD 355

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	574
2ntx_A	365	EMB|CAB41934.1, prone8; dimer, guanine nucleotide	0.0
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-07

>2ntx_A EMB|CAB41934.1, prone8; dimer, guanine nucleotide exchange factor, signaling protein; HET: MSE; 2.20A {Arabidopsis thaliana} PDB: 2nty_A* 2wbl_A Length = 365

 Score =  578 bits (1491), Expect = 0.0
 Identities = 196/387 (50%), Positives = 260/387 (67%), Gaps = 25/387 (6%)

Query: 87  EKSDTDLSEVEMMKERFAKLLLGEDMSGGGKGVCTALAISNAITNLSATVFGELWRLEPL 146
           ++S+   +++EMMK+RFAKLLLGEDMSGGGKGV +ALA+SNAITNL+A++FGE  +L+P+
Sbjct: 2   KRSERQQADMEMMKDRFAKLLLGEDMSGGGKGVSSALALSNAITNLAASIFGEQTKLQPM 61

Query: 147 APQKKAMWRREMQWLLCVSDSIVELVPSIQQFPGGGTYEVMATRPRSDLYMNLPALKKLD 206
              ++A W++E+ WLL V+D IVE VPS Q    G   E+M TR R DL MN+PAL+KLD
Sbjct: 62  PQDRQARWKKEIDWLLSVTDHIVEFVPSQQTSKDGVCTEIMVTRQRGDLLMNIPALRKLD 121

Query: 207 AMLIGMLDGF-CETEFWYVDRGIVVGDGGDRDAFSSMVPSGRPSVRHEEKWWLPCPKVPQ 265
           AMLI  LD F    EFWYV R    G                 + R  +KWWLP  KVP 
Sbjct: 122 AMLIDTLDNFRGHNEFWYVSRDSEEGQQAR-------------NDRTNDKWWLPPVKVPP 168

Query: 266 NGLSEDVRKKLQQCRDCTNQILKAAMAINSSVLAEMEIPAAYLETLPKNGKACLGDIIYR 325
            GLSE  R+ L   +D   Q+ KAAMAIN+ VL+EMEIP +Y+++LPKNG+A LGD IY+
Sbjct: 169 GGLSEPSRRMLYFQKDSVTQVQKAAMAINAQVLSEMEIPESYIDSLPKNGRASLGDSIYK 228

Query: 326 YITADQFSPECLLDCLDLSSEHHTLEVANRIEAAVHVWKQKDQRKHLSHSKSRRSSWGGK 385
            IT + F PE  L  LD+S+EH  L++ NRIEA+V +WK+K   K        +SSWG  
Sbjct: 229 SITEEWFDPEQFLAMLDMSTEHKVLDLKNRIEASVVIWKRKLHTKD------TKSSWGSA 282

Query: 386 VKGLVADSEKNHSLAHRAETLLHSLRLRFPGLPQTALDMNKIQYNKDVGQSILESYSRVM 445
           V       EK      RAET+L  L+ +FPGLPQ++LD++KIQ+NKDVGQ++LESYSR++
Sbjct: 283 V-----SLEKRELFEERAETILVLLKQKFPGLPQSSLDISKIQFNKDVGQAVLESYSRIL 337

Query: 446 ESLAFNIMARIDDVLFVDDATKRCAAA 472
           ESLA+ +M+RI+DVL+ D    +    
Sbjct: 338 ESLAYTVMSRIEDVLYTDTLALKQTLL 364

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 62.2 bits (150), Expect = 3e-10
 Identities = 65/432 (15%), Positives = 137/432 (31%), Gaps = 99/432 (22%)

Query: 81  VWDEKPEKSDTDLSEVEMMKERFAKLLLGEDMSGGGKGVCTALAISNA--ITNLSATVFG 138
           V   +P      L +  +++ R AK +L + + G GK         +      +   +F 
Sbjct: 131 VSRLQPYLK---LRQA-LLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIF- 185

Query: 139 ELWRLEPLAPQKKAMWRREMQWLLCVSDSIVELVPSIQQFPGGGT---YEVMATRPRSDL 195
             W L  L          EM   L       ++ P+        +     + + +     
Sbjct: 186 --W-LN-LKNCNSPETVLEMLQKLL-----YQIDPNWTSRSDHSSNIKLRIHSIQAELRR 236

Query: 196 YMNLPALKKLDAMLIGMLDGFCETEFW-YVDRG--IVV--GDGGDRDAFSSMVPSGRPSV 250
            +     +    +L+  L      + W   +    I++        D  S+   +   S+
Sbjct: 237 LLKSKPYEN--CLLV--LLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTT-HISL 291

Query: 251 RHEEKWWLPCPKVPQNGLSEDVRKKLQ-QCRDCTNQIL-KAAMAINSSVLAEMEIPAAYL 308
            H               L+ D  K L  +  DC  Q L +  +  N   L+   I A  +
Sbjct: 292 DHHSM-----------TLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLS---IIAESI 337

Query: 309 ETLPKNGKACLGDIIYRYITADQFSP--ECLLDCLDLSSEH----HTLEV----ANRIEA 358
               ++G A   +  ++++  D+ +   E  L+ L+  +E+      L V    A+ I  
Sbjct: 338 ----RDGLATWDN--WKHVNCDKLTTIIESSLNVLE-PAEYRKMFDRLSVFPPSAH-IPT 389

Query: 359 AV--HVWKQKDQRK-----HLSHSKSRRSSWGGKVKGLVADSEKNHSLAHRAETLLHSLR 411
            +   +W    +       +  H  S           LV    K  +++      + S+ 
Sbjct: 390 ILLSLIWFDVIKSDVMVVVNKLHKYS-----------LVEKQPKESTIS------IPSIY 432

Query: 412 LRFPGLPQTALDMNKIQYNKDVGQSILESYSRVMESLAFNIMARIDD---VLFVDDATKR 468
           L      +    +++         SI++ Y+      + +++    D      +    K 
Sbjct: 433 LELKVKLENEYALHR---------SIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKN 483

Query: 469 CAAAESISLFSR 480
               E ++LF  
Sbjct: 484 IEHPERMTLFRM 495

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 52.5 bits (125), Expect = 3e-07
 Identities = 67/515 (13%), Positives = 143/515 (27%), Gaps = 174/515 (33%)

Query: 1   MGSVSSDDDVSDQQSERC----GSYSLSADVSESESCSSSSFSG--RRFDAEGASSSMTS 54
           + + +S + V +   +       +++  +D S +      S     RR         + S
Sbjct: 189 LKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRL--------LKS 240

Query: 55  SPRP-------------VARGFGFPVPVMVPVIGGKDVVVWDEKPEKSDTDLSEVEM--- 98
            P                   F     +++     +   V D     + T +S       
Sbjct: 241 KPYENCLLVLLNVQNAKAWNAFNLSCKILLTT---RFKQVTDFLSAATTTHISLDHHSMT 297

Query: 99  -----MKERFAKLL------LGEDMSGGGKGVCTALAISNAITNLSATVFGELWRLEPLA 147
                +K    K L      L  ++            +S         +  E  R     
Sbjct: 298 LTPDEVKSLLLKYLDCRPQDLPREVLTTN-----PRRLS---------IIAESIRDGLAT 343

Query: 148 PQKKAMWRREMQWLL--CVSDSIVELVPSIQQFPGGGTYEVMATRPRSDLYMNLPALKKL 205
                 W+      L   +  S+  L P+  +      ++ ++  P S    ++P     
Sbjct: 344 WDN---WKHVNCDKLTTIIESSLNVLEPAEYR----KMFDRLSVFPPS---AHIP----- 388

Query: 206 DAMLIGMLDGFCETEFWYVDRGIVVGDGGDRDAFSSMVPSGRPSVRHEEKWWLPCPKVPQ 265
             +L+ ++                                          W+        
Sbjct: 389 -TILLSLI------------------------------------------WFDVIKSDVM 405

Query: 266 NGLSEDVRKKLQQCRDCTNQILKAAMAINSSVLAEMEIPAAYLETLPK-NGKACLGD-II 323
             +++  +  L + +   + I                IP+ YLE   K   +  L   I+
Sbjct: 406 VVVNKLHKYSLVEKQPKESTI---------------SIPSIYLELKVKLENEYALHRSIV 450

Query: 324 YRYITADQFSPE-CLLDCLD------LSSEHH--TLEVANRIEAAVHV-----W-KQKDQ 368
             Y     F  +  +   LD      +   HH   +E   R+     V     + +QK  
Sbjct: 451 DHYNIPKTFDSDDLIPPYLDQYFYSHIG--HHLKNIEHPERMTLFRMVFLDFRFLEQK-- 506

Query: 369 RKHLSHSKSRRSSWGGKVKGLVADSEK-------NHSLAHRAETLLHSLRLRFPGLPQTA 421
              + H  +  ++ G  +   +   +        N     R   L++++ L F  LP+  
Sbjct: 507 ---IRHDSTAWNASGS-ILNTLQQLKFYKPYICDNDPKYER---LVNAI-LDF--LPKIE 556

Query: 422 LDMNKIQYNKDVGQSILES-YSRVMESLAFNIMAR 455
            ++   +Y  D+ +  L +    + E  A   + R
Sbjct: 557 ENLICSKY-TDLLRIALMAEDEAIFEE-AHKQVQR 589

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	574
2ntx_A	365	EMB|CAB41934.1, prone8; dimer, guanine nucleotide	100.0

>2ntx_A EMB|CAB41934.1, prone8; dimer, guanine nucleotide exchange factor, signaling protein; HET: MSE; 2.20A {Arabidopsis thaliana} PDB: 2nty_A* 2wbl_A

Probab=100.00  E-value=1.6e-197  Score=1461.39  Aligned_cols=358  Identities=54%  Similarity=0.908  Sum_probs=308.4

Q ss_pred             CCChhHHHHHHHHHHHhhhccCCCCCCcchhhHHHHHHHHhHhHHhhhccccccCCCchhHHhhhhhhcceeeeccceeE
Q 008192           90 DTDLSEVEMMKERFAKLLLGEDMSGGGKGVCTALAISNAITNLSATVFGELWRLEPLAPQKKAMWRREMQWLLCVSDSIV  169 (574)
Q Consensus        90 ~~~~se~E~MKERFaKLLLGEDMSGggKGV~tALAiSNAITNL~AtVFGelwrLEPL~~ekK~mWrREmdwLLSVsD~IV  169 (574)
                      +...+|+||||||||||||||||||||||||||||||||||||||||||||||||||++|||+|||||||||||||||||
T Consensus         5 ~~~~se~e~mKErFaKLLLGEDmSG~gkGV~tAlAiSNAITNL~AsvFGe~~rLEPl~~ekK~~WrrEmdwLLsv~d~IV   84 (365)
T 2ntx_A            5 ERQQADMEMMKDRFAKLLLGEDMSGGGKGVSSALALSNAITNLAASIFGEQTKLQPMPQDRQARWKKEIDWLLSVTDHIV   84 (365)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTTCTTSSCCSCCHHHHHHHHHHHHHHHHHTTC-CCCCCCHHHHHHHHHHHHHHHGGGGGCE
T ss_pred             cCCchHHHHHHHHHHHHhhcCCCCCCCCcccHHHHHHhhhhHHHHHHhhhhhccCCCChHHHHHHHHhcceeeeccceeE
Confidence            44579999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeeecccccCCCceEEeeccccccccccCchhHHHHHHHHHHHhhccCC-CeeEEEeCCccccCCCCCCCCCCCCCCCCC
Q 008192          170 ELVPSIQQFPGGGTYEVMATRPRSDLYMNLPALKKLDAMLIGMLDGFCE-TEFWYVDRGIVVGDGGDRDAFSSMVPSGRP  248 (574)
Q Consensus       170 ElvPs~Q~~~dG~~~EVM~~rpRsDl~~NLPALrKLD~MLle~LDsF~d-tEFWYvd~g~~a~~~~~~~~~~~s~s~r~~  248 (574)
                      |||||+|++|||+++|||+||||+|||||||||||||+||||+||||+| ||||||++|+     ++        +.++.
T Consensus        85 E~vPs~Q~~~dG~~~EvM~~r~RsDl~~NlPALrKLD~MLle~LDsf~d~tEFWYv~~g~-----~~--------~~~~~  151 (365)
T 2ntx_A           85 EFVPSQQTSKDGVCTEIMVTRQRGDLLMNIPALRKLDAMLIDTLDNFRGHNEFWYVSRDS-----EE--------GQQAR  151 (365)
T ss_dssp             EEEEC----------CCEEEEECHHHHTHHHHHHHHHHHHHHHHHGGGSCCCCEEC------------------------
T ss_pred             EeccccccCCCCceEEEeeccccchhhcCcHHHHHHHHHHHHHHHhCCCCCeeEEecCCC-----Cc--------cccCC
Confidence            9999999999999999999999999999999999999999999999999 9999999994     12        12567


Q ss_pred             ccccCccccccCCCCCCCCCCHHHHHHhhhhhhhHHHHHHHHHHhhhhhhccCCCcHHHHhhcccCCccchhHHHHHHhh
Q 008192          249 SVRHEEKWWLPCPKVPQNGLSEDVRKKLQQCRDCTNQILKAAMAINSSVLAEMEIPAAYLETLPKNGKACLGDIIYRYIT  328 (574)
Q Consensus       249 ~~R~eeKWWLP~P~VPp~GLSe~~RK~L~~qrd~~nQIlKAAmAINs~vL~EMeVPe~y~esLPKnGrasLGD~iYr~iT  328 (574)
                      .+|||+|||||+|||||+||||++||+|||||||||||||||||||++||+|||||++|+|+||||||+||||.|||+||
T Consensus       152 ~~r~eeKWWLP~p~VP~~GLSe~~RK~L~~qrd~~~QIlKAAmAIN~~vL~EMeiP~~y~esLPKnGrasLGd~iYr~it  231 (365)
T 2ntx_A          152 NDRTNDKWWLPPVKVPPGGLSEPSRRMLYFQKDSVTQVQKAAMAINAQVLSEMEIPESYIDSLPKNGRASLGDSIYKSIT  231 (365)
T ss_dssp             ---------CCCEECCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHSCSCHHHHHCHHHHHHHT
T ss_pred             cccccccccCCCCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhHhHhhcCCCcHHHHHhcccccccccHHHHHHHHh
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCChhhHhhhcCCCchhhHHHHhhhhHHHHHHHHHhhhcccccCCCCCCCCccccccccccchhhHHHHHHHHHHHHH
Q 008192          329 ADQFSPECLLDCLDLSSEHHTLEVANRIEAAVHVWKQKDQRKHLSHSKSRRSSWGGKVKGLVADSEKNHSLAHRAETLLH  408 (574)
Q Consensus       329 ~d~Fspe~lL~~ldLssEH~aLe~aNRiEAai~vWrrK~~~k~~~~~~~~ksSWg~~Vkd~~~d~dK~e~laeRAEtlL~  408 (574)
                      +|+|||||||+||||+|||+|||+||||||||||||||++.+      ++|+|||.+|     +.|||++|++|||+||+
T Consensus       232 ~d~Fspe~ll~~ldlssEH~~le~anRiEAsi~vWrrk~~~k------~~kssW~~~~-----~~dK~~~l~eRAEtlL~  300 (365)
T 2ntx_A          232 EEWFDPEQFLAMLDMSTEHKVLDLKNRIEASVVIWKRKLHTK------DTKSSWGSAV-----SLEKRELFEERAETILV  300 (365)
T ss_dssp             CSSCCHHHHHHTSCCCSHHHHHHHHHHHHHHHHHHHHC-------------------------CHHHHHHHHHHHHHHHH
T ss_pred             hccCCHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHhhcCC------CCCCCCcccc-----chhHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999875      4789997644     58999999999999999


Q ss_pred             HHHhhCCCCCcchhhhhhhhhcchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccccccc
Q 008192          409 SLRLRFPGLPQTALDMNKIQYNKDVGQSILESYSRVMESLAFNIMARIDDVLFVDDATKRCAA  471 (574)
Q Consensus       409 ~LKqRfPgLpQT~LD~sKIQyNKDVG~aILESYSRVLEsLAfnI~sRIdDVL~~D~l~k~~~~  471 (574)
                      ||||||||||||+||++||||||||||||||||||||||||||||+|||||||+|++++++..
T Consensus       301 ~LKqRfPglpQTsLD~sKIQyNkDVG~aILESYSRvLesLAf~I~sRIdDvL~~D~~~~~~~~  363 (365)
T 2ntx_A          301 LLKQKFPGLPQSSLDISKIQFNKDVGQAVLESYSRILESLAYTVMSRIEDVLYTDTLALKQTL  363 (365)
T ss_dssp             HHHHHCTTCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             HHHHhCCCCCchHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCccc
Confidence            999999999999999999999999999999999999999999999999999999999998753

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00