Citrus Sinensis ID: 008221

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570---
MGTERKRKVSLFDVVDETSVSAKLVKTNGVGPGAMMNNNNSLINRWNGKPYSQRYYEILEKRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEAEKFQGYFYGAPLMKVPGRLHPVEIFYTQEPERDYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTEKSFNNDLQPQTYPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGALDDDGNLTEMGEKMSEFPLDPQMSKMLVESPKYNCSNEILSISAMLSVPNCFVRPREAQKAADEAKARFGHIDGDHLTLLNVYHAYKQNSKIFF
cccHHHHHHccccccccHHHHHHHccccccccccccccccccccccccccccHHHHHHHHHHHcccHHHHHHHHHHHHHHccEEEEEcccccccccHHHHHHHHcccccccccccccEEEEccccHHHHHHHHHHHHHHHcccccccccEEEEccccccccccEEEcccHHHHHHHccccccccccEEEEEccccccHHHHHHHHHHHHHHHHcccccEEEEcccccHHHHHcccccccEEEEccccccccEEEccccHHHHHHHHHHHHHHHHcccccccEEEEcccHHHHHHHHHHHHHHHHHcccccccEEEEEEcccccHHHHHccccccccccccccccccEEEEEEcccccccccccEEEEEcccccccccccccccccEEcccccHHHHHHHHcccccccccccEEEcccHHHHHccccccccccHHccccHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHccccccccccHHHHHHHccccccccHHHHHccccccccHHHHHHHHHcccccEEEcccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHcccccc
cccHHHHHccHccccccccccHHHHHcccccccHccccccccccccccccccHHHHHHHHHHccccHHHHHHHHHHHHHcccEEEEEEcccccccccHHHHHHHcccccccccccccEEEcccHHHHHHHHHHHHHHHHHccccccEEEEEEEEccccccccEEEEcccHHHHHHHHccccHHHcEEEEEccHHHHHHHHHHHHHHHHHHHHHccccEEEEEEccccHHHHHHHHccccEEEcccccccEEEEEccccHHHHHHHHHHHHHHHHcccccccEEEEEccHHHHHHHHHHHHHHHHHHccccccEEEEEEEccccHHHHHHHccccccccccccccccEEEEEEEEEEEEEEEccEEEEEcccccccccccccccccEEEEccHcHHHHHHHcccccccccccEEEEEcHHHHHHHHcccccHHHHHHHHHHHHHHHHHcccccEEEEcccccccHHHHHHHHHHHHHHHHccccccccHHHHHHHcccccHHHHHHHHHcccccccHHHHHHHHHHccccEEEccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccccc
mgterkrkVSLFDVVDETSVSAKLvktngvgpgammnnnnslinrwngkpysQRYYEILEkrkslpvwQQKEEFLQVLKANQVIILVGetgsgkttqipqfvlegvdietpDRRRKMMIACTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDEAHERTLATDVLFGLLKEVlknrpdlkLVVMSATLEAEKfqgyfygaplmkvpgrlhpveifytqepERDYLEAAIRTVVQIhmcepsgdiLVFLTGEEEIEDACRKITKEITnmgdqvgpvkvvplystlppamqqkifepapppskeggppgrkivvstniaetsltidgivyvidpgfakqkvynprvrvesllvspiskasahqrsgragrtqpgkcfrlyteksfnndlqpqtypeiLRSNLANTVLTLKKlgiddlvhfdfmdppapETLMRALEVLNYLgaldddgnltemgekmsefpldpqmskmlvespkyncsneILSISAMlsvpncfvrpreAQKAADEAKARfghidgdhlTLLNVYHAYKQNSKIFF
mgterkrkvslfdvvdetsvsaklvktngvgpgammnnnnslinrwnGKPYSQRYYEILEKRKSLPVWQQKEEFLQVLKANQVIILVGetgsgkttqipqfvlegvdietpdrrRKMMiactqprrvaamsvsrrvAEEMdvtigeevgysirfedcsSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEAEKFQGYFYGAPLMKVPGRLHPVEIFYTQEPERDYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEitnmgdqvgpvKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVspiskasahqrsgragrtqpgKCFRLYTEKSFNNDLQPQTYPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGALDDDGNLTEMGEKMSEFPLDPQMSKMLVESPKYNCSNEILSISAMLSVPNCFVRPREAQKAADEAKARFGHIDGDHLTLLNVYHAYKQNSKIFF
MGTERKRKVSLFDVVDETSVSAKLVKTNGVGPGAMMNNNNSLINRWNGKPYSQRYYEILEKRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPrrvaamsvsrrvaEEMDVTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEAEKFQGYFYGAPLMKVPGRLHPVEIFYTQEPERDYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEpapppskeggppgRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTEKSFNNDLQPQTYPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGALDDDGNLTEMGEKMSEFPLDPQMSKMLVESPKYNCSNEILSISAMLSVPNCFVRPREAQKAADEAKARFGHIDGDHLTLLNVYHAYKQNSKIFF
**********LFDVVDETSVSAKLVKTNGVGPGAMMNNNNSLINRWNGKPYSQRYYEILEKRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEAEKFQGYFYGAPLMKVPGRLHPVEIFYTQEPERDYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYST**************************IVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLV*********************KCFRLYTEKSFNNDLQPQTYPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGALDD****************************KYNCSNEILSISAMLSVPNCFVRP*********AKARFGHIDGDHLTLLNVYHAYKQ******
*************************************************************RKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEAEKFQGYFYGAPLMKVPGRLHPVEIFYTQEPERDYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKE*******VGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTEKSFNNDLQPQTYPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGALDDDGNLTEMGEKMSEFPLDPQMSKMLVESPKYNCSNEILSISAMLSVPNCF*****************GHIDGDHLTLLNVYHAYKQNSKIFF
********VSLFDVVDETSVSAKLVKTNGVGPGAMMNNNNSLINRWNGKPYSQRYYEILEKRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEAEKFQGYFYGAPLMKVPGRLHPVEIFYTQEPERDYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPA*********PGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPI***************QPGKCFRLYTEKSFNNDLQPQTYPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGALDDDGNLTEMGEKMSEFPLDPQMSKMLVESPKYNCSNEILSISAMLSVPNCFVRPR*********KARFGHIDGDHLTLLNVYHAYKQNSKIFF
******************************************INRWNGKPYSQRYYEILEKRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEAEKFQGYFYGAPLMKVPGRLHPVEIFYTQEPERDYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKAS***********QPGKCFRLYTEKSFNNDLQPQTYPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGALDDDGNLTEMGEKMSEFPLDPQMSKMLVESPKYNCSNEILSISAMLSVPNCFVRPREAQKAADEAKARFGHIDGDHLTLLNVYHAYKQN*****
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MGTERKRKVSLFDVVDETSVSAKLVKTNGVGPGAMMNNNNSLINRWNGKPYSQRYYEILEKRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEAEKFQGYFYGAPLMKVPGRLHPVEIFYTQEPERDYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTEKSFNNDLQPQTYPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGALDDDGNLTEMGEKMSEFPLDPQMSKMLVESPKYNCSNEILSISAMLSVPNCFVRPREAQKAADEAKARFGHIDGDHLTLLNVYHAYKQNSKIFF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query573 2.2.26 [Sep-21-2011]
O22899 729 Probable pre-mRNA-splicin no no 0.994 0.781 0.861 0.0
O35286 795 Putative pre-mRNA-splicin no no 0.914 0.659 0.714 0.0
O43143 795 Putative pre-mRNA-splicin yes no 0.914 0.659 0.714 0.0
Q5RAZ4 795 Putative pre-mRNA-splicin yes no 0.914 0.659 0.714 0.0
Q20875 739 Putative pre-mRNA-splicin yes no 0.919 0.713 0.687 0.0
O42945 735 Probable pre-mRNA-splicin yes no 0.902 0.703 0.702 0.0
Q54NJ4 727 Putative pre-mRNA-splicin yes no 0.897 0.707 0.676 0.0
P53131 767 Pre-mRNA-splicing factor yes no 0.900 0.672 0.665 0.0
O17438455 Putative pre-mRNA-splicin no no 0.708 0.892 0.769 0.0
Q54F05 1160 ATP-dependent RNA helicas no no 0.872 0.431 0.579 1e-176
>sp|O22899|DHX15_ARATH Probable pre-mRNA-splicing factor ATP-dependent RNA helicase OS=Arabidopsis thaliana GN=At2g47250 PE=2 SV=1 Back     alignment and function desciption
 Score = 1025 bits (2649), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 491/570 (86%), Positives = 533/570 (93%)

Query: 1   MGTERKRKVSLFDVVDETSVSAKLVKTNGVGPGAMMNNNNSLINRWNGKPYSQRYYEILE 60
           MGTERKRKVSLFDV+++ S+S+K  K+NG+G  A     ++LIN+WNGK YSQRY+EILE
Sbjct: 1   MGTERKRKVSLFDVMEDPSLSSKNTKSNGLGLAAAAGGGSNLINKWNGKAYSQRYFEILE 60

Query: 61  KRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIA 120
           KR+ LPVW QK++FL  L +NQ +ILVGETGSGKTTQIPQFVL+ V  +  D+ RK ++ 
Sbjct: 61  KRRDLPVWLQKDDFLNTLNSNQTLILVGETGSGKTTQIPQFVLDAVVADNSDKGRKWLVG 120

Query: 121 CTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDP 180
           CTQPRRVAAMSVSRRVA+EMDV+IGEEVGYSIRFEDC+S+RT+LKYLTDGMLLREAM DP
Sbjct: 121 CTQPRRVAAMSVSRRVADEMDVSIGEEVGYSIRFEDCTSSRTMLKYLTDGMLLREAMADP 180

Query: 181 LLERYKVIVLDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEAEKFQGYFYGAPL 240
           LLERYKVI+LDEAHERTLATDVLFGLLKEVL+NRPDLKLVVMSATLEAEKFQ YF GAPL
Sbjct: 181 LLERYKVIILDEAHERTLATDVLFGLLKEVLRNRPDLKLVVMSATLEAEKFQEYFSGAPL 240

Query: 241 MKVPGRLHPVEIFYTQEPERDYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKIT 300
           MKVPGRLHPVEIFYTQEPERDYLEAAIRTVVQIHMCEP GDILVFLTGEEEIEDACRKI 
Sbjct: 241 MKVPGRLHPVEIFYTQEPERDYLEAAIRTVVQIHMCEPPGDILVFLTGEEEIEDACRKIN 300

Query: 301 KEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLT 360
           KE++N+GDQVGPVKVVPLYSTLPPAMQQKIF+PAP P  EGGP GRKIVVSTNIAETSLT
Sbjct: 301 KEVSNLGDQVGPVKVVPLYSTLPPAMQQKIFDPAPVPLTEGGPAGRKIVVSTNIAETSLT 360

Query: 361 IDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTEKS 420
           IDGIVYVIDPGFAKQKVYNPR+RVESLLVSPISKASAHQRSGRAGRT+PGKCFRLYTEKS
Sbjct: 361 IDGIVYVIDPGFAKQKVYNPRIRVESLLVSPISKASAHQRSGRAGRTRPGKCFRLYTEKS 420

Query: 421 FNNDLQPQTYPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGAL 480
           FNNDLQPQTYPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGAL
Sbjct: 421 FNNDLQPQTYPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGAL 480

Query: 481 DDDGNLTEMGEKMSEFPLDPQMSKMLVESPKYNCSNEILSISAMLSVPNCFVRPREAQKA 540
           DD+GNLT+ GE MSEFPLDPQMSKML+ SP++NCSNEILS+SAMLSVPNCFVRPREAQKA
Sbjct: 481 DDEGNLTKTGEIMSEFPLDPQMSKMLIVSPEFNCSNEILSVSAMLSVPNCFVRPREAQKA 540

Query: 541 ADEAKARFGHIDGDHLTLLNVYHAYKQNSK 570
           ADEAKARFGHIDGDHLTLLNVYHAYKQN++
Sbjct: 541 ADEAKARFGHIDGDHLTLLNVYHAYKQNNE 570
Pre-mRNA processing factor involved in disassembly of spliceosomes after the release of mature mRNA.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 6EC: .EC: 4EC: .EC: 1EC: 3
>sp|O35286|DHX15_MOUSE Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 OS=Mus musculus GN=Dhx15 PE=2 SV=2 Back     alignment and function description
>sp|O43143|DHX15_HUMAN Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 OS=Homo sapiens GN=DHX15 PE=1 SV=2 Back     alignment and function description
>sp|Q5RAZ4|DHX15_PONAB Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 OS=Pongo abelii GN=DHX15 PE=2 SV=2 Back     alignment and function description
>sp|Q20875|DHX15_CAEEL Putative pre-mRNA-splicing factor ATP-dependent RNA helicase F56D2.6 OS=Caenorhabditis elegans GN=F56D2.6 PE=2 SV=1 Back     alignment and function description
>sp|O42945|DHX15_SCHPO Probable pre-mRNA-splicing factor ATP-dependent RNA helicase prp43 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=prp43 PE=3 SV=1 Back     alignment and function description
>sp|Q54NJ4|DHX15_DICDI Putative pre-mRNA-splicing factor ATP-dependent RNA helicase dhx15 OS=Dictyostelium discoideum GN=dhx15 PE=3 SV=1 Back     alignment and function description
>sp|P53131|PRP43_YEAST Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP43 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PRP43 PE=1 SV=1 Back     alignment and function description
>sp|O17438|DHX15_STRPU Putative pre-mRNA-splicing factor ATP-dependent RNA helicase PRP1 (Fragment) OS=Strongylocentrotus purpuratus GN=PRP1 PE=2 SV=1 Back     alignment and function description
>sp|Q54F05|DHX8_DICDI ATP-dependent RNA helicase dhx8 OS=Dictyostelium discoideum GN=dhx8 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query573
255548377 731 ATP-dependent RNA helicase, putative [Ri 0.993 0.778 0.924 0.0
225437618 728 PREDICTED: probable pre-mRNA-splicing fa 0.993 0.781 0.928 0.0
356499785 722 PREDICTED: probable pre-mRNA-splicing fa 0.982 0.779 0.921 0.0
357442187 721 ATP-dependent RNA helicase-like protein 0.980 0.779 0.914 0.0
356505645 720 PREDICTED: probable pre-mRNA-splicing fa 0.979 0.779 0.912 0.0
356572811 721 PREDICTED: probable pre-mRNA-splicing fa 0.980 0.779 0.908 0.0
449436399 732 PREDICTED: probable pre-mRNA-splicing fa 0.994 0.778 0.909 0.0
224130944 728 predicted protein [Populus trichocarpa] 0.993 0.781 0.901 0.0
224064627 728 predicted protein [Populus trichocarpa] 0.993 0.781 0.917 0.0
15228730 726 pre-mRNA-splicing factor ATP-dependent R 0.987 0.779 0.877 0.0
>gi|255548377|ref|XP_002515245.1| ATP-dependent RNA helicase, putative [Ricinus communis] gi|223545725|gb|EEF47229.1| ATP-dependent RNA helicase, putative [Ricinus communis] Back     alignment and taxonomy information
 Score = 1097 bits (2836), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 530/573 (92%), Positives = 552/573 (96%), Gaps = 4/573 (0%)

Query: 1   MGTERKRKVSLFDVVDETSVSAKLVKTNGVGPGAMMNNN---NSLINRWNGKPYSQRYYE 57
           MGT+RKRKVSLFDVVDETSVSAK+ K+NG G GA MNNN   NSLIN WNGKPYSQRYYE
Sbjct: 1   MGTDRKRKVSLFDVVDETSVSAKIAKSNG-GGGAAMNNNGSSNSLINSWNGKPYSQRYYE 59

Query: 58  ILEKRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKM 117
           ILEKRK+LPVW QKEEFL VLK NQV+ILVGETGSGKTTQIPQFVLE VDIETPD+RRKM
Sbjct: 60  ILEKRKTLPVWHQKEEFLSVLKKNQVLILVGETGSGKTTQIPQFVLEAVDIETPDKRRKM 119

Query: 118 MIACTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAM 177
           MIACTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDCSSA+TVLKYLTDGMLLREAM
Sbjct: 120 MIACTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDCSSAKTVLKYLTDGMLLREAM 179

Query: 178 TDPLLERYKVIVLDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEAEKFQGYFYG 237
           TDPLLERYKVI+LDEAHERTLATDVLFGLLKEVL+NRPDLKLVVMSATLEAEKFQGYF  
Sbjct: 180 TDPLLERYKVIILDEAHERTLATDVLFGLLKEVLRNRPDLKLVVMSATLEAEKFQGYFND 239

Query: 238 APLMKVPGRLHPVEIFYTQEPERDYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACR 297
           APLM+VPGRLHPVEIFYTQ+PERDYLEAAIRTVVQIHMCEP GDILVFLTGEEEIEDACR
Sbjct: 240 APLMRVPGRLHPVEIFYTQDPERDYLEAAIRTVVQIHMCEPLGDILVFLTGEEEIEDACR 299

Query: 298 KITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAET 357
           KITKEI+NMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPP  EGGP GRKIVVSTNIAET
Sbjct: 300 KITKEISNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPLNEGGPAGRKIVVSTNIAET 359

Query: 358 SLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYT 417
           SLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYT
Sbjct: 360 SLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYT 419

Query: 418 EKSFNNDLQPQTYPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYL 477
           EKSF+ DLQPQTYPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALE+LNYL
Sbjct: 420 EKSFHQDLQPQTYPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEMLNYL 479

Query: 478 GALDDDGNLTEMGEKMSEFPLDPQMSKMLVESPKYNCSNEILSISAMLSVPNCFVRPREA 537
           GALDDDGNLT++GE MSEFPLDPQM+KMLV SP++NCSNEILS+SAMLSVPNCFVRPREA
Sbjct: 480 GALDDDGNLTKLGEIMSEFPLDPQMAKMLVVSPEFNCSNEILSVSAMLSVPNCFVRPREA 539

Query: 538 QKAADEAKARFGHIDGDHLTLLNVYHAYKQNSK 570
           QKAADEAKARFGHIDGDHLTLLNVYHAYKQN++
Sbjct: 540 QKAADEAKARFGHIDGDHLTLLNVYHAYKQNNE 572

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225437618|ref|XP_002278247.1| PREDICTED: probable pre-mRNA-splicing factor ATP-dependent RNA helicase [Vitis vinifera] gi|147787427|emb|CAN64445.1| hypothetical protein VITISV_036050 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356499785|ref|XP_003518717.1| PREDICTED: probable pre-mRNA-splicing factor ATP-dependent RNA helicase-like [Glycine max] Back     alignment and taxonomy information
>gi|357442187|ref|XP_003591371.1| ATP-dependent RNA helicase-like protein [Medicago truncatula] gi|355480419|gb|AES61622.1| ATP-dependent RNA helicase-like protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|356505645|ref|XP_003521600.1| PREDICTED: probable pre-mRNA-splicing factor ATP-dependent RNA helicase-like [Glycine max] Back     alignment and taxonomy information
>gi|356572811|ref|XP_003554559.1| PREDICTED: probable pre-mRNA-splicing factor ATP-dependent RNA helicase-like isoform 1 [Glycine max] Back     alignment and taxonomy information
>gi|449436399|ref|XP_004135980.1| PREDICTED: probable pre-mRNA-splicing factor ATP-dependent RNA helicase-like [Cucumis sativus] gi|449515243|ref|XP_004164659.1| PREDICTED: probable pre-mRNA-splicing factor ATP-dependent RNA helicase-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|224130944|ref|XP_002320963.1| predicted protein [Populus trichocarpa] gi|222861736|gb|EEE99278.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224064627|ref|XP_002301528.1| predicted protein [Populus trichocarpa] gi|222843254|gb|EEE80801.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|15228730|ref|NP_191790.1| pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [Arabidopsis thaliana] gi|7340702|emb|CAB82945.1| ATP-dependent RNA helicase-like protein [Arabidopsis thaliana] gi|21539575|gb|AAM53340.1| ATP-dependent RNA helicase-like protein [Arabidopsis thaliana] gi|34098783|gb|AAQ56774.1| At3g62310 [Arabidopsis thaliana] gi|332646816|gb|AEE80337.1| pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query573
TAIR|locus:2095989 726 AT3G62310 [Arabidopsis thalian 0.987 0.779 0.836 8.2e-257
TAIR|locus:2065210 729 AT2G47250 [Arabidopsis thalian 0.994 0.781 0.822 7.6e-254
FB|FBgn0033160 729 CG11107 [Drosophila melanogast 0.928 0.729 0.693 6.6e-200
ZFIN|ZDB-GENE-030131-650 769 dhx15 "DEAH (Asp-Glu-Ala-His) 0.956 0.712 0.662 3.4e-196
UNIPROTKB|F1NHI3 762 DHX15 "Uncharacterized protein 0.966 0.727 0.653 7e-196
UNIPROTKB|A5D7D9 795 DHX15 "Uncharacterized protein 0.910 0.656 0.683 9e-196
UNIPROTKB|E2R2U3 795 DHX15 "Uncharacterized protein 0.910 0.656 0.683 9e-196
UNIPROTKB|O43143 795 DHX15 "Putative pre-mRNA-splic 0.910 0.656 0.683 9e-196
UNIPROTKB|F1S5A8 795 DHX15 "Uncharacterized protein 0.910 0.656 0.683 9e-196
MGI|MGI:1099786 795 Dhx15 "DEAH (Asp-Glu-Ala-His) 0.910 0.656 0.683 9e-196
TAIR|locus:2095989 AT3G62310 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2472 (875.2 bits), Expect = 8.2e-257, P = 8.2e-257
 Identities = 477/570 (83%), Positives = 512/570 (89%)

Query:     1 MGTERKRKVSLFDVVDETSVSAKLVKTNGVGPGAMMNNNNSLINRWNGKPYSQRYYEILE 60
             MGTERKRK+SLFDV+D+ S  AK  KT+G+  G +    NSLIN+WNGKPYSQRYY+ILE
Sbjct:     1 MGTERKRKISLFDVMDDPSAPAKNAKTSGLPDGGI----NSLINKWNGKPYSQRYYDILE 56

Query:    61 KRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIA 120
             KR++LPVW QKEEFL+ L  NQ +ILVGETGSGKTTQIPQFV++ VD ET D+RRK ++ 
Sbjct:    57 KRRTLPVWLQKEEFLKTLNNNQTLILVGETGSGKTTQIPQFVIDAVDAETSDKRRKWLVG 116

Query:   121 CTQPXXXXXXXXXXXXXEEMDVTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDP 180
             CTQP             EEMDVTIGEEVGYSIRFEDCSS RTVLKYLTDGMLLREAM DP
Sbjct:   117 CTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDCSSPRTVLKYLTDGMLLREAMADP 176

Query:   181 LLERYKVIVLDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEAEKFQGYFYGAPL 240
             LLERYKVI+LDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEAEKFQ YF GAPL
Sbjct:   177 LLERYKVIILDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEAEKFQDYFSGAPL 236

Query:   241 MKVPGRLHPVEIFYTQEPERDYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKIT 300
             MKVPGRLHPVEIFYTQEPERDYLEAAIRTVVQIHMCEP GDILVFLTGEEEIEDACRKI 
Sbjct:   237 MKVPGRLHPVEIFYTQEPERDYLEAAIRTVVQIHMCEPPGDILVFLTGEEEIEDACRKIN 296

Query:   301 KEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEXXXXXXXXXXXXXRKIVVSTNIAETSLT 360
             KE+ N+GDQVGP+KVVPLYSTLPPAMQQKIF+             RKIVVSTNIAETSLT
Sbjct:   297 KEVGNLGDQVGPIKVVPLYSTLPPAMQQKIFDPAPEPVTEGGPPGRKIVVSTNIAETSLT 356

Query:   361 IDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTEKS 420
             IDGIVYVIDPGFAKQKVYNPR+RVESLLVSPISKASAHQRSGRAGRT+PGKCFRLYTEKS
Sbjct:   357 IDGIVYVIDPGFAKQKVYNPRIRVESLLVSPISKASAHQRSGRAGRTRPGKCFRLYTEKS 416

Query:   421 FNNDLQPQTYPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGAL 480
             FNNDLQPQTYPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGAL
Sbjct:   417 FNNDLQPQTYPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGAL 476

Query:   481 DDDGNLTEMGEKMSEFPLDPQMSKMLVESPKYNCSNEILSISAMLSVPNCFVRPREAQKA 540
             DDDGNLT+ GE MSEFPLDPQM+KML+ SP++NCSNEILS+SAMLSVPNCF+RPREAQKA
Sbjct:   477 DDDGNLTKTGEIMSEFPLDPQMAKMLIVSPEFNCSNEILSVSAMLSVPNCFIRPREAQKA 536

Query:   541 ADEAKARFGHIDGDHLTLLNVYHAYKQNSK 570
             ADEAKARFGHI+GDHLTLLNVYHA+KQN++
Sbjct:   537 ADEAKARFGHIEGDHLTLLNVYHAFKQNNE 566
GO:0003676 "nucleic acid binding" evidence=IEA
GO:0003724 "RNA helicase activity" evidence=ISS
GO:0004386 "helicase activity" evidence=IEA
GO:0005524 "ATP binding" evidence=IEA
GO:0005634 "nucleus" evidence=ISM
GO:0008026 "ATP-dependent helicase activity" evidence=IEA
GO:0005730 "nucleolus" evidence=IDA
GO:0005829 "cytosol" evidence=IDA
GO:0009560 "embryo sac egg cell differentiation" evidence=RCA
TAIR|locus:2065210 AT2G47250 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
FB|FBgn0033160 CG11107 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-650 dhx15 "DEAH (Asp-Glu-Ala-His) box polypeptide 15" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F1NHI3 DHX15 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|A5D7D9 DHX15 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E2R2U3 DHX15 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|O43143 DHX15 "Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1S5A8 DHX15 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
MGI|MGI:1099786 Dhx15 "DEAH (Asp-Glu-Ala-His) box polypeptide 15" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q20875DHX15_CAEEL3, ., 6, ., 4, ., 1, 30.68730.91970.7131yesno
Q54NJ4DHX15_DICDI3, ., 6, ., 4, ., 1, 30.67660.89700.7070yesno
Q5RAZ4DHX15_PONAB3, ., 6, ., 4, ., 1, 30.71450.91440.6591yesno
P53131PRP43_YEAST3, ., 6, ., 4, ., 1, 30.66540.90050.6727yesno
O43143DHX15_HUMAN3, ., 6, ., 4, ., 1, 30.71450.91440.6591yesno
O42945DHX15_SCHPO3, ., 6, ., 4, ., 1, 30.70280.90220.7034yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.6.4.130.914
3rd Layer3.6.40.921

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00028144001
SubName- Full=Putative uncharacterized protein (Chromosome chr7 scaffold_42, whole genome shotgun sequence); (728 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00021307001
SubName- Full=Chromosome chr8 scaffold_23, whole genome shotgun sequence; (586 aa)
   •• • 0.449
GSVIVG00034559001
SubName- Full=Chromosome chr9 scaffold_7, whole genome shotgun sequence; (840 aa)
   •• • 0.427
GSVIVG00037695001
SubName- Full=Chromosome undetermined scaffold_91, whole genome shotgun sequence; (245 aa)
   •• • 0.404

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query573
COG1643 845 COG1643, HrpA, HrpA-like helicases [DNA replicatio 0.0
TIGR01967 1283 TIGR01967, DEAH_box_HrpA, ATP-dependent helicase H 1e-151
PRK11131 1294 PRK11131, PRK11131, ATP-dependent RNA helicase Hrp 1e-144
TIGR01970 819 TIGR01970, DEAH_box_HrpB, ATP-dependent helicase H 3e-98
PRK11664 812 PRK11664, PRK11664, ATP-dependent RNA helicase Hrp 7e-88
pfam0440891 pfam04408, HA2, Helicase associated domain (HA2) 6e-40
smart0084782 smart00847, HA2, Helicase associated domain (HA2) 1e-30
cd00046144 cd00046, DEXDc, DEAD-like helicases superfamily 2e-30
smart00487201 smart00487, DEXDc, DEAD-like helicases superfamily 1e-25
PHA02653675 PHA02653, PHA02653, RNA helicase NPH-II; Provision 5e-14
cd00079131 cd00079, HELICc, Helicase superfamily c-terminal d 2e-13
smart0049082 smart00490, HELICc, helicase superfamily c-termina 2e-11
pfam0027178 pfam00271, Helicase_C, Helicase conserved C-termin 2e-09
pfam00270169 pfam00270, DEAD, DEAD/DEAH box helicase 0.001
smart00962197 smart00962, SRP54, SRP54-type protein, GTPase doma 0.003
>gnl|CDD|224557 COG1643, HrpA, HrpA-like helicases [DNA replication, recombination, and repair] Back     alignment and domain information 
 Score =  683 bits (1765), Expect = 0.0
 Identities = 255/546 (46%), Positives = 339/546 (62%), Gaps = 34/546 (6%)

Query: 39  NNSLINRWNGKPYSQRYYEILEKRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQI 98
           N    +  + +  S    +ILE R  LPV   ++E L+ ++ NQV+I+VGETGSGKTTQ+
Sbjct: 23  NQVRGSGMDARSRSANVPDILEYRSGLPVTAVRDEILKAIEQNQVVIIVGETGSGKTTQL 82

Query: 99  PQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDCS 158
           PQF+LE              I CTQPRR+AA SV+ RVAEE+   +GE VGYSIRFE   
Sbjct: 83  PQFLLEE------GLGIAGKIGCTQPRRLAARSVAERVAEELGEKLGETVGYSIRFESKV 136

Query: 159 SARTVLKYLTDGMLLREAMTDPLLERYKVIVLDEAHERTLATDVLFGLLKEVLKNRP-DL 217
           S RT +K +TDG+LLRE   DPLL  Y V+++DEAHER+L TD+L GLLK++L  R  DL
Sbjct: 137 SPRTRIKVMTDGILLREIQNDPLLSGYSVVIIDEAHERSLNTDILLGLLKDLLARRRDDL 196

Query: 218 KLVVMSATLEAEKFQGYFYGAPLMKVPGRLHPVEIFYTQEPERDY-LEAAIRTVVQIHMC 276
           KL++MSATL+AE+F  YF  AP++++ GR +PVEI Y  E E DY L  AI   V IH+ 
Sbjct: 197 KLIIMSATLDAERFSAYFGNAPVIEIEGRTYPVEIRYLPEAEADYILLDAIVAAVDIHLR 256

Query: 277 EPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGP-VKVVPLYSTLPPAMQQKIFEPAP 335
           E SG ILVFL G+ EIE     +         ++G  ++++PLY  L    Q ++FEPAP
Sbjct: 257 EGSGSILVFLPGQREIERTAEWL------EKAELGDDLEILPLYGALSAEEQVRVFEPAP 310

Query: 336 PPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKA 395
                     RK+V++TNIAETSLTI GI YVID G AK+K Y+PR  +  L   PISKA
Sbjct: 311 GGK-------RKVVLATNIAETSLTIPGIRYVIDSGLAKEKRYDPRTGLTRLETEPISKA 363

Query: 396 SAHQRSGRAGRTQPGKCFRLYTEKSFNNDLQPQTYPEILRSNLANTVLTLKKLGID-DLV 454
           SA QR+GRAGRT PG C+RLY+E+ F       T PEILR++L+  VL LK LGI  D+ 
Sbjct: 364 SADQRAGRAGRTGPGICYRLYSEEDF-LAFPEFTLPEILRTDLSGLVLQLKSLGIGQDIA 422

Query: 455 HFDFMDPPAPETLMRALEVLNYLGALDDDGNLTEMGEKMSEFPLDPQMSKMLVESPKYNC 514
            F F+DPP    +  AL +L  LGALDD G LT +G++MS  PLDP++++ML+ +P+  C
Sbjct: 423 PFPFLDPPPEAAIQAALTLLQELGALDDSGKLTPLGKQMSLLPLDPRLARMLLTAPEGGC 482

Query: 515 SNEILSISAMLSVPNC------FVRPREAQKAADEAK-ARF---GHIDGDHLTLLNVYHA 564
             E  +I++MLS  +        V+ R+ + A D  K  +        GDHL LL  +  
Sbjct: 483 LGEAATIASMLSEQDRESDFSRDVKLRKQRTAQDLLKRLKRRNAADPRGDHLLLLEAFPD 542

Query: 565 YKQNSK 570
                +
Sbjct: 543 RIARKR 548

Length = 845
>gnl|CDD|233659 TIGR01967, DEAH_box_HrpA, ATP-dependent helicase HrpA Back     alignment and domain information
>gnl|CDD|182986 PRK11131, PRK11131, ATP-dependent RNA helicase HrpA; Provisional Back     alignment and domain information
>gnl|CDD|233660 TIGR01970, DEAH_box_HrpB, ATP-dependent helicase HrpB Back     alignment and domain information
>gnl|CDD|236950 PRK11664, PRK11664, ATP-dependent RNA helicase HrpB; Provisional Back     alignment and domain information
>gnl|CDD|218070 pfam04408, HA2, Helicase associated domain (HA2) Back     alignment and domain information
>gnl|CDD|214852 smart00847, HA2, Helicase associated domain (HA2) Add an annotation Back     alignment and domain information
>gnl|CDD|238005 cd00046, DEXDc, DEAD-like helicases superfamily Back     alignment and domain information
>gnl|CDD|214692 smart00487, DEXDc, DEAD-like helicases superfamily Back     alignment and domain information
>gnl|CDD|177443 PHA02653, PHA02653, RNA helicase NPH-II; Provisional Back     alignment and domain information
>gnl|CDD|238034 cd00079, HELICc, Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process Back     alignment and domain information
>gnl|CDD|197757 smart00490, HELICc, helicase superfamily c-terminal domain Back     alignment and domain information
>gnl|CDD|201125 pfam00271, Helicase_C, Helicase conserved C-terminal domain Back     alignment and domain information
>gnl|CDD|215832 pfam00270, DEAD, DEAD/DEAH box helicase Back     alignment and domain information
>gnl|CDD|214940 smart00962, SRP54, SRP54-type protein, GTPase domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 573
KOG0922 674 consensus DEAH-box RNA helicase [RNA processing an 100.0
KOG0925 699 consensus mRNA splicing factor ATP-dependent RNA h 100.0
KOG0923 902 consensus mRNA splicing factor ATP-dependent RNA h 100.0
KOG0924 1042 consensus mRNA splicing factor ATP-dependent RNA h 100.0
COG1643 845 HrpA HrpA-like helicases [DNA replication, recombi 100.0
KOG0920 924 consensus ATP-dependent RNA helicase A [RNA proces 100.0
PRK11131 1294 ATP-dependent RNA helicase HrpA; Provisional 100.0
TIGR01967 1283 DEAH_box_HrpA ATP-dependent helicase HrpA. This mo 100.0
KOG0926 1172 consensus DEAH-box RNA helicase [RNA processing an 100.0
TIGR01970 819 DEAH_box_HrpB ATP-dependent helicase HrpB. This mo 100.0
PRK11664 812 ATP-dependent RNA helicase HrpB; Provisional 100.0
PHA02653675 RNA helicase NPH-II; Provisional 100.0
KOG0921 1282 consensus Dosage compensation complex, subunit MLE 100.0
KOG0330476 consensus ATP-dependent RNA helicase [RNA processi 100.0
KOG0331519 consensus ATP-dependent RNA helicase [RNA processi 100.0
COG0513513 SrmB Superfamily II DNA and RNA helicases [DNA rep 100.0
KOG0328400 consensus Predicted ATP-dependent RNA helicase FAL 100.0
KOG0345567 consensus ATP-dependent RNA helicase [RNA processi 100.0
KOG0338691 consensus ATP-dependent RNA helicase [RNA processi 100.0
KOG0333673 consensus U5 snRNP-like RNA helicase subunit [RNA 100.0
KOG0343 758 consensus RNA Helicase [RNA processing and modific 100.0
PRK11776460 ATP-dependent RNA helicase DbpA; Provisional 100.0
PTZ00110545 helicase; Provisional 100.0
KOG0340442 consensus ATP-dependent RNA helicase [RNA processi 100.0
KOG0326459 consensus ATP-dependent RNA helicase [RNA processi 100.0
PRK11634 629 ATP-dependent RNA helicase DeaD; Provisional 100.0
PRK04837423 ATP-dependent RNA helicase RhlB; Provisional 100.0
KOG0342543 consensus ATP-dependent RNA helicase pitchoune [RN 100.0
PLN00206518 DEAD-box ATP-dependent RNA helicase; Provisional 100.0
PRK04537572 ATP-dependent RNA helicase RhlB; Provisional 100.0
PRK10590456 ATP-dependent RNA helicase RhlE; Provisional 100.0
KOG0332477 consensus ATP-dependent RNA helicase [RNA processi 100.0
PRK11192434 ATP-dependent RNA helicase SrmB; Provisional 100.0
PRK01297475 ATP-dependent RNA helicase RhlB; Provisional 100.0
PRK01172 674 ski2-like helicase; Provisional 100.0
KOG0339731 consensus ATP-dependent RNA helicase [RNA processi 100.0
PTZ00424401 helicase 45; Provisional 100.0
KOG0336629 consensus ATP-dependent RNA helicase [RNA processi 100.0
KOG0335482 consensus ATP-dependent RNA helicase [RNA processi 100.0
KOG0347731 consensus RNA helicase [RNA processing and modific 100.0
KOG0348708 consensus ATP-dependent RNA helicase [RNA processi 100.0
KOG0341610 consensus DEAD-box protein abstrakt [RNA processin 100.0
PRK02362 737 ski2-like helicase; Provisional 100.0
TIGR03817 742 DECH_helic helicase/secretion neighborhood putativ 100.0
KOG0327397 consensus Translation initiation factor 4F, helica 100.0
KOG0346569 consensus RNA helicase [RNA processing and modific 100.0
PRK00254 720 ski2-like helicase; Provisional 100.0
KOG0334 997 consensus RNA helicase [RNA processing and modific 100.0
KOG4284 980 consensus DEAD box protein [Transcription] 100.0
TIGR00614470 recQ_fam ATP-dependent DNA helicase, RecQ family. 100.0
TIGR02621 844 cas3_GSU0051 CRISPR-associated helicase Cas3, Anae 100.0
PRK11057 607 ATP-dependent DNA helicase RecQ; Provisional 100.0
KOG0350620 consensus DEAD-box ATP-dependent RNA helicase [RNA 100.0
PLN03137 1195 ATP-dependent DNA helicase; Q4-like; Provisional 100.0
KOG0337529 consensus ATP-dependent RNA helicase [RNA processi 100.0
KOG0344593 consensus ATP-dependent RNA helicase [RNA processi 99.98
PRK13767 876 ATP-dependent helicase; Provisional 99.97
TIGR01389 591 recQ ATP-dependent DNA helicase RecQ. The ATP-depe 99.97
TIGR00580926 mfd transcription-repair coupling factor (mfd). Al 99.96
PRK106891147 transcription-repair coupling factor; Provisional 99.96
PRK10917681 ATP-dependent DNA helicase RecG; Provisional 99.96
TIGR00643630 recG ATP-dependent DNA helicase RecG. 99.95
COG1202 830 Superfamily II helicase, archaea-specific [General 99.95
TIGR01587358 cas3_core CRISPR-associated helicase Cas3. This mo 99.95
COG1201 814 Lhr Lhr-like helicases [General function predictio 99.95
PRK09751 1490 putative ATP-dependent helicase Lhr; Provisional 99.94
TIGR03158357 cas3_cyano CRISPR-associated helicase, Cyano-type. 99.94
PRK09401 1176 reverse gyrase; Reviewed 99.93
COG0514590 RecQ Superfamily II DNA helicase [DNA replication, 99.92
KOG0329387 consensus ATP-dependent RNA helicase [RNA processi 99.92
COG1204 766 Superfamily II helicase [General function predicti 99.92
PRK14701 1638 reverse gyrase; Provisional 99.91
PRK12898656 secA preprotein translocase subunit SecA; Reviewed 99.91
KOG0349725 consensus Putative DEAD-box RNA helicase DDX1 [RNA 99.9
PHA02558501 uvsW UvsW helicase; Provisional 99.9
PRK13766 773 Hef nuclease; Provisional 99.9
COG1111542 MPH1 ERCC4-like helicases [DNA replication, recomb 99.9
TIGR01054 1171 rgy reverse gyrase. Generally, these gyrases are e 99.9
PRK09200790 preprotein translocase subunit SecA; Reviewed 99.89
TIGR03714762 secA2 accessory Sec system translocase SecA2. Memb 99.88
COG1205 851 Distinct helicase family with a unique C-terminal 99.88
KOG0354746 consensus DEAD-box like helicase [General function 99.87
PRK09694878 helicase Cas3; Provisional 99.86
TIGR00963745 secA preprotein translocase, SecA subunit. The pro 99.85
PRK05580679 primosome assembly protein PriA; Validated 99.83
COG4098441 comFA Superfamily II DNA/RNA helicase required for 99.82
TIGR00603732 rad25 DNA repair helicase rad25. All proteins in t 99.82
KOG0921 1282 consensus Dosage compensation complex, subunit MLE 99.82
KOG0351 941 consensus ATP-dependent DNA helicase [Replication, 99.8
PF04408102 HA2: Helicase associated domain (HA2); InterPro: I 99.79
KOG0952 1230 consensus DNA/RNA helicase MER3/SLH1, DEAD-box sup 99.79
TIGR00595505 priA primosomal protein N'. All proteins in this f 99.77
PRK04914 956 ATP-dependent helicase HepA; Validated 99.74
KOG0352 641 consensus ATP-dependent DNA helicase [Replication, 99.74
KOG0951 1674 consensus RNA helicase BRR2, DEAD-box superfamily 99.73
COG1126240 GlnQ ABC-type polar amino acid transport system, A 99.71
smart0084792 HA2 Helicase associated domain (HA2) Add an annota 99.7
COG1116248 TauB ABC-type nitrate/sulfonate/bicarbonate transp 99.7
COG1136226 SalX ABC-type antimicrobial peptide transport syst 99.69
COG1121254 ZnuC ABC-type Mn/Zn transport systems, ATPase comp 99.67
COG1135339 AbcC ABC-type metal ion transport system, ATPase c 99.67
COG4581 1041 Superfamily II RNA helicase [DNA replication, reco 99.66
PRK11448 1123 hsdR type I restriction enzyme EcoKI subunit R; Pr 99.65
COG1120258 FepC ABC-type cobalamin/Fe3+-siderophores transpor 99.65
KOG0353695 consensus ATP-dependent DNA helicase [General func 99.65
COG1117253 PstB ABC-type phosphate transport system, ATPase c 99.64
KOG0948 1041 consensus Nuclear exosomal RNA helicase MTR4, DEAD 99.64
PRK13104 896 secA preprotein translocase subunit SecA; Reviewed 99.63
COG1061442 SSL2 DNA or RNA helicases of superfamily II [Trans 99.62
COG1203733 CRISPR-associated helicase Cas3 [Defense mechanism 99.61
COG1200677 RecG RecG-like helicase [DNA replication, recombin 99.61
TIGR00631655 uvrb excinuclease ABC, B subunit. This family is b 99.6
PRK05298652 excinuclease ABC subunit B; Provisional 99.58
PRK12906796 secA preprotein translocase subunit SecA; Reviewed 99.58
COG3638258 ABC-type phosphate/phosphonate transport system, A 99.58
cd00268203 DEADc DEAD-box helicases. A diverse family of prot 99.58
COG1124252 DppF ABC-type dipeptide/oligopeptide/nickel transp 99.58
COG1127263 Ttg2A ABC-type transport system involved in resist 99.58
COG1125309 OpuBA ABC-type proline/glycine betaine transport s 99.58
COG3839338 MalK ABC-type sugar transport systems, ATPase comp 99.57
COG3840231 ThiQ ABC-type thiamine transport system, ATPase co 99.56
COG2884223 FtsE Predicted ATPase involved in cell division [C 99.55
PRK12904 830 preprotein translocase subunit SecA; Reviewed 99.55
COG4525259 TauB ABC-type taurine transport system, ATPase com 99.53
KOG0947 1248 consensus Cytoplasmic exosomal RNA helicase SKI2, 99.53
COG1131293 CcmA ABC-type multidrug transport system, ATPase c 99.53
PRK12900 1025 secA preprotein translocase subunit SecA; Reviewed 99.52
cd00079131 HELICc Helicase superfamily c-terminal domain; ass 99.52
COG3842352 PotA ABC-type spermidine/putrescine transport syst 99.52
COG1118345 CysA ABC-type sulfate/molybdate transport systems, 99.52
TIGR02314343 ABC_MetN D-methionine ABC transporter, ATP-binding 99.51
PRK11650356 ugpC glycerol-3-phosphate transporter ATP-binding 99.51
TIGR01186363 proV glycine betaine/L-proline transport ATP bindi 99.51
PRK13537306 nodulation ABC transporter NodI; Provisional 99.51
cd03255218 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of 99.5
PRK11432351 fbpC ferric transporter ATP-binding subunit; Provi 99.5
TIGR00960216 3a0501s02 Type II (General) Secretory Pathway (IIS 99.5
KOG0950 1008 consensus DNA polymerase theta/eta, DEAD-box super 99.5
COG1122235 CbiO ABC-type cobalt transport system, ATPase comp 99.5
TIGR03265353 PhnT2 putative 2-aminoethylphosphonate ABC transpo 99.49
COG4555245 NatA ABC-type Na+ transport system, ATPase compone 99.49
cd03226205 ABC_cobalt_CbiO_domain2 Domain II of the ABC compo 99.49
cd03293220 ABC_NrtD_SsuB_transporters NrtD and SsuB are the A 99.49
cd03261235 ABC_Org_Solvent_Resistant ABC (ATP-binding cassett 99.49
PRK13536340 nodulation factor exporter subunit NodI; Provision 99.49
PRK09452375 potA putrescine/spermidine ABC transporter ATPase 99.48
cd03259213 ABC_Carb_Solutes_like ABC Carbohydrate and Solute 99.48
TIGR01188302 drrA daunorubicin resistance ABC transporter ATP-b 99.48
PRK11607377 potG putrescine transporter ATP-binding subunit; P 99.48
TIGR02673214 FtsE cell division ATP-binding protein FtsE. This 99.48
cd03256241 ABC_PhnC_transporter ABC-type phosphate/phosphonat 99.48
COG11971139 Mfd Transcription-repair coupling factor (superfam 99.47
PRK10851353 sulfate/thiosulfate transporter subunit; Provision 99.47
cd03298211 ABC_ThiQ_thiamine_transporter ABC-type thiamine tr 99.47
PRK11000369 maltose/maltodextrin transporter ATP-binding prote 99.47
COG0411250 LivG ABC-type branched-chain amino acid transport 99.47
PF0027178 Helicase_C: Helicase conserved C-terminal domain; 99.47
TIGR01166190 cbiO cobalt transport protein ATP-binding subunit. 99.46
PRK12899 970 secA preprotein translocase subunit SecA; Reviewed 99.46
PRK11629233 lolD lipoprotein transporter ATP-binding subunit; 99.46
PRK11153343 metN DL-methionine transporter ATP-binding subunit 99.46
PRK09536402 btuD corrinoid ABC transporter ATPase; Reviewed 99.46
TIGR02315243 ABC_phnC phosphonate ABC transporter, ATP-binding 99.46
PRK10070400 glycine betaine transporter ATP-binding subunit; P 99.46
TIGR02211221 LolD_lipo_ex lipoprotein releasing system, ATP-bin 99.46
TIGR01288303 nodI ATP-binding ABC transporter family nodulation 99.46
cd03296239 ABC_CysA_sulfate_importer Part of the ABC transpor 99.45
cd03230173 ABC_DR_subfamily_A This family of ATP-binding prot 99.45
TIGR03608206 L_ocin_972_ABC putative bacteriocin export ABC tra 99.45
PRK13543214 cytochrome c biogenesis protein CcmA; Provisional 99.45
PRK10584228 putative ABC transporter ATP-binding protein YbbA; 99.45
cd03258233 ABC_MetN_methionine_transporter MetN (also known a 99.45
PRK11144352 modC molybdate transporter ATP-binding protein; Pr 99.45
cd03225211 ABC_cobalt_CbiO_domain1 Domain I of the ABC compon 99.44
cd03269210 ABC_putative_ATPase This subfamily is involved in 99.44
cd03265220 ABC_DrrA DrrA is the ATP-binding protein component 99.44
cd03301213 ABC_MalK_N The N-terminal ATPase domain of the mal 99.44
cd03266218 ABC_NatA_sodium_exporter NatA is the ATPase compon 99.44
COG4175386 ProV ABC-type proline/glycine betaine transport sy 99.44
cd03292214 ABC_FtsE_transporter FtsE is a hydrophilic nucleot 99.44
PRK13650279 cbiO cobalt transporter ATP-binding subunit; Provi 99.44
TIGR03258362 PhnT 2-aminoethylphosphonate ABC transport system, 99.44
PRK11247257 ssuB aliphatic sulfonates transport ATP-binding su 99.44
cd03219236 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans 99.44
cd03262213 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- 99.44
cd03294269 ABC_Pro_Gly_Bertaine This family comprises the gly 99.44
cd03268208 ABC_BcrA_bacitracin_resist The BcrA subfamily repr 99.43
cd03246173 ABCC_Protease_Secretion This family represents the 99.43
TIGR03864236 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, 99.43
cd03235213 ABC_Metallic_Cations ABC component of the metal-ty 99.43
TIGR01277213 thiQ thiamine ABC transporter, ATP-binding protein 99.43
PRK13107 908 preprotein translocase subunit SecA; Reviewed 99.43
cd03229178 ABC_Class3 This class is comprised of all BPD (Bin 99.43
TIGR02142354 modC_ABC molybdenum ABC transporter, ATP-binding p 99.42
TIGR03522301 GldA_ABC_ATP gliding motility-associated ABC trans 99.42
PRK11831269 putative ABC transporter ATP-binding protein YrbF; 99.42
PRK11248255 tauB taurine transporter ATP-binding subunit; Prov 99.42
cd03218232 ABC_YhbG The ABC transporters belonging to the Yhb 99.42
PRK10771232 thiQ thiamine transporter ATP-binding subunit; Pro 99.42
PRK15079331 oligopeptide ABC transporter ATP-binding protein O 99.42
PRK13538204 cytochrome c biogenesis protein CcmA; Provisional 99.42
PRK13540200 cytochrome c biogenesis protein CcmA; Provisional 99.42
TIGR01184230 ntrCD nitrate transport ATP-binding subunits C and 99.42
PRK13647274 cbiO cobalt transporter ATP-binding subunit; Provi 99.42
cd03295242 ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin 99.41
PRK13539207 cytochrome c biogenesis protein CcmA; Provisional 99.41
PRK10908222 cell division protein FtsE; Provisional 99.41
PRK13637287 cbiO cobalt transporter ATP-binding subunit; Provi 99.41
cd03224222 ABC_TM1139_LivF_branched LivF (TM1139) is part of 99.41
TIGR03415382 ABC_choXWV_ATP choline ABC transporter, ATP-bindin 99.41
cd03237246 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o 99.41
cd03215182 ABC_Carb_Monos_II This family represents domain II 99.4
PRK13635279 cbiO cobalt transporter ATP-binding subunit; Provi 99.4
COG1137243 YhbG ABC-type (unclassified) transport system, ATP 99.4
COG0444316 DppD ABC-type dipeptide/oligopeptide/nickel transp 99.4
PRK11264250 putative amino-acid ABC transporter ATP-binding pr 99.4
PRK11124242 artP arginine transporter ATP-binding subunit; Pro 99.4
cd03231201 ABC_CcmA_heme_exporter CcmA, the ATP-binding compo 99.4
PRK13651305 cobalt transporter ATP-binding subunit; Provisiona 99.4
PRK13646286 cbiO cobalt transporter ATP-binding subunit; Provi 99.39
PRK11308327 dppF dipeptide transporter ATP-binding subunit; Pr 99.39
PRK10575265 iron-hydroxamate transporter ATP-binding subunit; 99.39
PRK11300255 livG leucine/isoleucine/valine transporter ATP-bin 99.39
PRK13644274 cbiO cobalt transporter ATP-binding subunit; Provi 99.39
TIGR01189198 ccmA heme ABC exporter, ATP-binding protein CcmA. 99.39
PRK09493240 glnQ glutamine ABC transporter ATP-binding protein 99.39
PRK13632271 cbiO cobalt transporter ATP-binding subunit; Provi 99.39
cd03257228 ABC_NikE_OppD_transporters The ABC transporter sub 99.39
TIGR03740223 galliderm_ABC gallidermin-class lantibiotic protec 99.39
PRK10895241 lipopolysaccharide ABC transporter ATP-binding pro 99.38
PRK11614237 livF leucine/isoleucine/valine transporter ATP-bin 99.38
PRK13634290 cbiO cobalt transporter ATP-binding subunit; Provi 99.38
TIGR03005252 ectoine_ehuA ectoine/hydroxyectoine ABC transporte 99.38
cd03232192 ABC_PDR_domain2 The pleiotropic drug resistance-li 99.38
PRK10619257 histidine/lysine/arginine/ornithine transporter su 99.38
PRK09984262 phosphonate/organophosphate ester transporter subu 99.38
cd03297214 ABC_ModC_molybdenum_transporter ModC is an ABC-typ 99.38
cd03234226 ABCG_White The White subfamily represents ABC tran 99.38
cd03263220 ABC_subfamily_A The ABCA subfamily mediates the tr 99.38
TIGR03411242 urea_trans_UrtD urea ABC transporter, ATP-binding 99.37
PRK10247225 putative ABC transporter ATP-binding protein YbbL; 99.37
PRK10253265 iron-enterobactin transporter ATP-binding protein; 99.37
COG4181228 Predicted ABC-type transport system involved in ly 99.37
PRK13633280 cobalt transporter ATP-binding subunit; Provisiona 99.37
PRK13642277 cbiO cobalt transporter ATP-binding subunit; Provi 99.37
PRK13548258 hmuV hemin importer ATP-binding subunit; Provision 99.37
PRK13652277 cbiO cobalt transporter ATP-binding subunit; Provi 99.37
TIGR02982220 heterocyst_DevA ABC exporter ATP-binding subunit, 99.37
PRK13636283 cbiO cobalt transporter ATP-binding subunit; Provi 99.37
cd03247178 ABCC_cytochrome_bd The CYD subfamily implicated in 99.36
PRK15439510 autoinducer 2 ABC transporter ATP-binding protein 99.36
PF00270169 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 99.36
PRK13641287 cbiO cobalt transporter ATP-binding subunit; Provi 99.36
PRK11231255 fecE iron-dicitrate transporter ATP-binding subuni 99.36
PRK13643288 cbiO cobalt transporter ATP-binding subunit; Provi 99.36
TIGR02769265 nickel_nikE nickel import ATP-binding protein NikE 99.36
PRK14250241 phosphate ABC transporter ATP-binding protein; Pro 99.36
TIGR03410230 urea_trans_UrtE urea ABC transporter, ATP-binding 99.36
cd03213194 ABCG_EPDR ABCG transporters are involved in eye pi 99.36
PRK13631320 cbiO cobalt transporter ATP-binding subunit; Provi 99.36
cd03233202 ABC_PDR_domain1 The pleiotropic drug resistance (P 99.36
PRK10762501 D-ribose transporter ATP binding protein; Provisio 99.36
cd03300232 ABC_PotA_N PotA is an ABC-type transporter and the 99.36
PRK13640282 cbiO cobalt transporter ATP-binding subunit; Provi 99.36
cd03264211 ABC_drug_resistance_like ABC-type multidrug transp 99.36
PRK13541195 cytochrome c biogenesis protein CcmA; Provisional 99.36
PRK13639275 cbiO cobalt transporter ATP-binding subunit; Provi 99.35
cd03238176 ABC_UvrA The excision repair protein UvrA; Nucleot 99.35
cd03299235 ABC_ModC_like Archeal protein closely related to M 99.35
PRK15093330 antimicrobial peptide ABC transporter ATP-binding 99.35
PRK13648269 cbiO cobalt transporter ATP-binding subunit; Provi 99.35
PRK09700510 D-allose transporter ATP-binding protein; Provisio 99.35
TIGR03873256 F420-0_ABC_ATP proposed F420-0 ABC transporter, AT 99.35
TIGR03771223 anch_rpt_ABC anchored repeat-type ABC transporter, 99.35
PRK11022326 dppD dipeptide transporter ATP-binding subunit; Pr 99.35
PRK03695248 vitamin B12-transporter ATPase; Provisional 99.35
COG0410237 LivF ABC-type branched-chain amino acid transport 99.35
cd03267236 ABC_NatA_like Similar in sequence to NatA, this is 99.34
cd03228171 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein 99.34
COG1123539 ATPase components of various ABC-type transport sy 99.34
TIGR00968237 3a0106s01 sulfate ABC transporter, ATP-binding pro 99.34
PRK09473330 oppD oligopeptide transporter ATP-binding componen 99.34
cd03217200 ABC_FeS_Assembly ABC-type transport system involve 99.34
cd03216163 ABC_Carb_Monos_I This family represents the domain 99.33
PRK13638271 cbiO cobalt transporter ATP-binding subunit; Provi 99.33
cd03223166 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass 99.33
COG3845501 ABC-type uncharacterized transport systems, ATPase 99.33
PRK13645289 cbiO cobalt transporter ATP-binding subunit; Provi 99.33
PRK15112267 antimicrobial peptide ABC system ATP-binding prote 99.32
TIGR01978243 sufC FeS assembly ATPase SufC. SufC is part of the 99.32
PRK15056272 manganese/iron transporter ATP-binding protein; Pr 99.32
PRK13649280 cbiO cobalt transporter ATP-binding subunit; Provi 99.32
PRK13549506 xylose transporter ATP-binding subunit; Provisiona 99.32
PRK09544251 znuC high-affinity zinc transporter ATPase; Review 99.31
COG1101263 PhnK ABC-type uncharacterized transport system, AT 99.31
PRK10982491 galactose/methyl galaxtoside transporter ATP-bindi 99.31
TIGR02323253 CP_lyasePhnK phosphonate C-P lyase system protein 99.31
COG4148352 ModC ABC-type molybdate transport system, ATPase c 99.31
cd03260227 ABC_PstB_phosphate_transporter Phosphate uptake is 99.3
PRK10261623 glutathione transporter ATP-binding protein; Provi 99.3
cd03245220 ABCC_bacteriocin_exporters ABC-type bacteriocin ex 99.3
TIGR01187325 potA spermidine/putrescine ABC transporter ATP-bin 99.3
PRK11288501 araG L-arabinose transporter ATP-binding protein; 99.3
COG4152300 ABC-type uncharacterized transport system, ATPase 99.29
smart0049082 HELICc helicase superfamily c-terminal domain. 99.29
PRK11701258 phnK phosphonate C-P lyase system protein PhnK; Pr 99.29
cd03254229 ABCC_Glucan_exporter_like Glucan exporter ATP-bind 99.29
TIGR02324224 CP_lyasePhnL phosphonate C-P lyase system protein 99.29
COG1129500 MglA ABC-type sugar transport system, ATPase compo 99.29
cd03252237 ABCC_Hemolysin The ABC-transporter hemolysin B is 99.29
PRK10261623 glutathione transporter ATP-binding protein; Provi 99.28
cd03369207 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty 99.28
PRK10419268 nikE nickel transporter ATP-binding protein NikE; 99.28
cd03248226 ABCC_TAP TAP, the Transporter Associated with Anti 99.28
COG1123539 ATPase components of various ABC-type transport sy 99.28
COG2274709 SunT ABC-type bacteriocin/lantibiotic exporters, c 99.27
PRK10762501 D-ribose transporter ATP binding protein; Provisio 99.27
PRK11288501 araG L-arabinose transporter ATP-binding protein; 99.27
cd03290218 ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec 99.27
COG4598256 HisP ABC-type histidine transport system, ATPase c 99.27
TIGR03269520 met_CoM_red_A2 methyl coenzyme M reductase system, 99.27
cd03222177 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi 99.27
PRK14247250 phosphate ABC transporter ATP-binding protein; Pro 99.26
PRK14242253 phosphate transporter ATP-binding protein; Provisi 99.26
cd03249238 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) 99.26
cd03251234 ABCC_MsbA MsbA is an essential ABC transporter, cl 99.26
TIGR00972247 3a0107s01c2 phosphate ABC transporter, ATP-binding 99.26
PRK09700510 D-allose transporter ATP-binding protein; Provisio 99.26
cd03214180 ABC_Iron-Siderophores_B12_Hemin ABC transporters, 99.26
PRK14259269 phosphate ABC transporter ATP-binding protein; Pro 99.26
TIGR02868529 CydC thiol reductant ABC exporter, CydC subunit. T 99.26
PRK10418254 nikD nickel transporter ATP-binding protein NikD; 99.26
PRK14273254 phosphate ABC transporter ATP-binding protein; Pro 99.26
CHL00131252 ycf16 sulfate ABC transporter protein; Validated 99.26
TIGR02770230 nickel_nikD nickel import ATP-binding protein NikD 99.25
COG4608268 AppF ABC-type oligopeptide transport system, ATPas 99.25
PRK15134529 microcin C ABC transporter ATP-binding protein Yej 99.25
COG4988559 CydD ABC-type transport system involved in cytochr 99.25
KOG4150 1034 consensus Predicted ATP-dependent RNA helicase [RN 99.25
PRK13547272 hmuV hemin importer ATP-binding subunit; Provision 99.25
PRK14269246 phosphate ABC transporter ATP-binding protein; Pro 99.25
TIGR02633500 xylG D-xylose ABC transporter, ATP-binding protein 99.25
PRK13409590 putative ATPase RIL; Provisional 99.24
COG4161242 ArtP ABC-type arginine transport system, ATPase co 99.24
cd03253236 ABCC_ATM1_transporter ATM1 is an ABC transporter t 99.24
COG1119257 ModF ABC-type molybdenum transport system, ATPase 99.24
PRK10938490 putative molybdenum transport ATP-binding protein 99.24
TIGR03269520 met_CoM_red_A2 methyl coenzyme M reductase system, 99.24
PRK14265274 phosphate ABC transporter ATP-binding protein; Pro 99.24
PRK14258261 phosphate ABC transporter ATP-binding protein; Pro 99.24
cd03289275 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic 99.24
PRK14268258 phosphate ABC transporter ATP-binding protein; Pro 99.23
PRK14245250 phosphate ABC transporter ATP-binding protein; Pro 99.23
PRK14241258 phosphate transporter ATP-binding protein; Provisi 99.23
PRK11174588 cysteine/glutathione ABC transporter membrane/ATP- 99.23
PRK14262250 phosphate ABC transporter ATP-binding protein; Pro 99.22
TIGR012572272 rim_protein retinal-specific rim ABC transporter. 99.22
PRK14267253 phosphate ABC transporter ATP-binding protein; Pro 99.22
PRK15439510 autoinducer 2 ABC transporter ATP-binding protein 99.22
TIGR02633500 xylG D-xylose ABC transporter, ATP-binding protein 99.21
cd03250204 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. 99.21
PRK13549506 xylose transporter ATP-binding subunit; Provisiona 99.21
PRK14240250 phosphate transporter ATP-binding protein; Provisi 99.21
PRK14239252 phosphate transporter ATP-binding protein; Provisi 99.21
cd03244221 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. 99.21
PRK10744260 pstB phosphate transporter ATP-binding protein; Pr 99.21
PRK14251251 phosphate ABC transporter ATP-binding protein; Pro 99.2
PRK14235267 phosphate transporter ATP-binding protein; Provisi 99.2
PRK13546264 teichoic acids export protein ATP-binding subunit; 99.2
cd03220224 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo 99.2
PRK14260259 phosphate ABC transporter ATP-binding protein; Pro 99.2
TIGR01257 2272 rim_protein retinal-specific rim ABC transporter. 99.19
PRK15134529 microcin C ABC transporter ATP-binding protein Yej 99.19
PRK14248268 phosphate ABC transporter ATP-binding protein; Pro 99.19
PRK14249251 phosphate ABC transporter ATP-binding protein; Pro 99.19
PRK14263261 phosphate ABC transporter ATP-binding protein; Pro 99.19
TIGR03797686 NHPM_micro_ABC2 NHPM bacteriocin system ABC transp 99.19
PRK10790592 putative multidrug transporter membrane\ATP-bindin 99.19
PRK14275286 phosphate ABC transporter ATP-binding protein; Pro 99.19
PRK14254285 phosphate ABC transporter ATP-binding protein; Pro 99.18
TIGR02857529 CydD thiol reductant ABC exporter, CydD subunit. U 99.18
PRK14243264 phosphate transporter ATP-binding protein; Provisi 99.18
PRK14237267 phosphate transporter ATP-binding protein; Provisi 99.18
PRK14272252 phosphate ABC transporter ATP-binding protein; Pro 99.18
PRK13657588 cyclic beta-1,2-glucan ABC transporter; Provisiona 99.18
KOG0058716 consensus Peptide exporter, ABC superfamily [Intra 99.18
COG4172534 ABC-type uncharacterized transport system, duplica 99.18
TIGR03375694 type_I_sec_LssB type I secretion system ATPase, Ls 99.18
PRK14255252 phosphate ABC transporter ATP-binding protein; Pro 99.17
PRK11176582 lipid transporter ATP-binding/permease protein; Pr 99.17
cd03221144 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is 99.17
PRK14253249 phosphate ABC transporter ATP-binding protein; Pro 99.17
PRK09580248 sufC cysteine desulfurase ATPase component; Review 99.17
TIGR01842544 type_I_sec_PrtD type I secretion system ABC transp 99.17
PRK11819556 putative ABC transporter ATP-binding protein; Revi 99.17
PRK14257329 phosphate ABC transporter ATP-binding protein; Pro 99.16
TIGR03796710 NHPM_micro_ABC1 NHPM bacteriocin system ABC transp 99.16
PRK11160574 cysteine/glutathione ABC transporter membrane/ATP- 99.16
PLN03211659 ABC transporter G-25; Provisional 99.16
COG1132567 MdlB ABC-type multidrug transport system, ATPase a 99.16
PRK14256252 phosphate ABC transporter ATP-binding protein; Pro 99.16
PRK13409590 putative ATPase RIL; Provisional 99.15
PRK14246257 phosphate ABC transporter ATP-binding protein; Pro 99.15
COG4172534 ABC-type uncharacterized transport system, duplica 99.15
PRK10982491 galactose/methyl galaxtoside transporter ATP-bindi 99.14
COG4136213 ABC-type uncharacterized transport system, ATPase 99.14
PRK13545549 tagH teichoic acids export protein ATP-binding sub 99.14
PRK14238271 phosphate transporter ATP-binding protein; Provisi 99.14
PRK10535648 macrolide transporter ATP-binding /permease protei 99.14
PRK14274259 phosphate ABC transporter ATP-binding protein; Pro 99.14
TIGR00958711 3a01208 Conjugate Transporter-2 (CT2) Family prote 99.14
PRK14244251 phosphate ABC transporter ATP-binding protein; Pro 99.14
PRK14270251 phosphate ABC transporter ATP-binding protein; Pro 99.14
COG4618580 ArpD ABC-type protease/lipase transport system, AT 99.14
PRK14271276 phosphate ABC transporter ATP-binding protein; Pro 99.14
COG4604252 CeuD ABC-type enterochelin transport system, ATPas 99.14
TIGR02203571 MsbA_lipidA lipid A export permease/ATP-binding pr 99.14
cd03236255 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o 99.14
KOG0055 1228 consensus Multidrug/pheromone exporter, ABC superf 99.13
PRK15064530 ABC transporter ATP-binding protein; Provisional 99.13
TIGR01193708 bacteriocin_ABC ABC-type bacteriocin transporter. 99.13
TIGR03719552 ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa 99.13
cd00267157 ABC_ATPase ABC (ATP-binding cassette) transporter 99.13
PRK15177213 Vi polysaccharide export ATP-binding protein VexC; 99.13
PF00005137 ABC_tran: ABC transporter This structure is on hol 99.12
cd03288257 ABCC_SUR2 The SUR domain 2. The sulfonylurea recep 99.12
PRK14236272 phosphate transporter ATP-binding protein; Provisi 99.12
PRK14261253 phosphate ABC transporter ATP-binding protein; Pro 99.12
PRK14266250 phosphate ABC transporter ATP-binding protein; Pro 99.12
TIGR00955617 3a01204 The Eye Pigment Precursor Transporter (EPP 99.11
TIGR01194555 cyc_pep_trnsptr cyclic peptide transporter. This m 99.11
cd03291282 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic 99.11
PRK14264305 phosphate ABC transporter ATP-binding protein; Pro 99.11
COG0396251 sufC Cysteine desulfurase activator ATPase [Posttr 99.11
PRK14252265 phosphate ABC transporter ATP-binding protein; Pro 99.1
PRK10789569 putative multidrug transporter membrane\ATP-bindin 99.1
PRK15064530 ABC transporter ATP-binding protein; Provisional 99.1
cd03278197 ABC_SMC_barmotin Barmotin is a tight junction-asso 99.1
COG1110 1187 Reverse gyrase [DNA replication, recombination, an 99.09
COG4586325 ABC-type uncharacterized transport system, ATPase 99.09
TIGR02204576 MsbA_rel ABC transporter, permease/ATP-binding pro 99.09
PRK10938490 putative molybdenum transport ATP-binding protein 99.09
TIGR01192585 chvA glucan exporter ATP-binding protein. This mod 99.09
TIGR00954659 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA 99.09
PLN032321495 ABC transporter C family member; Provisional 99.09
PLN031301622 ABC transporter C family member; Provisional 99.08
TIGR009571522 MRP_assoc_pro multi drug resistance-associated pro 99.08
cd03270226 ABC_UvrA_I The excision repair protein UvrA domain 99.07
COG4619223 ABC-type uncharacterized transport system, ATPase 99.07
TIGR03719552 ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa 99.06
PRK10522547 multidrug transporter membrane component/ATP-bindi 99.06
PRK11819556 putative ABC transporter ATP-binding protein; Revi 99.06
PTZ002431560 ABC transporter; Provisional 99.06
TIGR01846694 type_I_sec_HlyB type I secretion system ABC transp 99.06
COG0488530 Uup ATPase components of ABC transporters with dup 99.05
PTZ00265 1466 multidrug resistance protein (mdr1); Provisional 99.05
TIGR012711490 CFTR_protein cystic fibrosis transmembrane conduct 99.04
PLN031401470 ABC transporter G family member; Provisional 99.04
PRK10636638 putative ABC transporter ATP-binding protein; Prov 99.04
PRK11147635 ABC transporter ATPase component; Reviewed 99.04
KOG00551228 consensus Multidrug/pheromone exporter, ABC superf 99.03
PTZ002651466 multidrug resistance protein (mdr1); Provisional 99.02
TIGR009561394 3a01205 Pleiotropic Drug Resistance (PDR) Family p 99.0
KOG0057591 consensus Mitochondrial Fe/S cluster exporter, ABC 99.0
PLN03142 1033 Probable chromatin-remodeling complex ATPase chain 99.0
TIGR01407850 dinG_rel DnaQ family exonuclease/DinG family helic 98.99
COG4167267 SapF ABC-type antimicrobial peptide transport syst 98.98
PRK11147635 ABC transporter ATPase component; Reviewed 98.97
KOG0953700 consensus Mitochondrial RNA helicase SUV3, DEAD-bo 98.97
COG4559259 ABC-type hemin transport system, ATPase component 98.97
PRK10636638 putative ABC transporter ATP-binding protein; Prov 98.96
COG4674249 Uncharacterized ABC-type transport system, ATPase 98.96
COG1198730 PriA Primosomal protein N' (replication factor Y) 98.94
COG1134249 TagH ABC-type polysaccharide/polyol phosphate tran 98.94
COG4178604 ABC-type uncharacterized transport system, permeas 98.93
PLN03073718 ABC transporter F family; Provisional 98.93
COG4133209 CcmA ABC-type transport system involved in cytochr 98.92
cd03240204 ABC_Rad50 The catalytic domains of Rad50 are simil 98.91
TIGR025621110 cas3_yersinia CRISPR-associated helicase Cas3. The 98.91
KOG0061613 consensus Transporter, ABC superfamily (Breast can 98.91
smart00487201 DEXDc DEAD-like helicases superfamily. 98.9
COG4987573 CydC ABC-type transport system involved in cytochr 98.9
PLN03140 1470 ABC transporter G family member; Provisional 98.9
COG0488530 Uup ATPase components of ABC transporters with dup 98.9
COG4107258 PhnK ABC-type phosphonate transport system, ATPase 98.89
TIGR00956 1394 3a01205 Pleiotropic Drug Resistance (PDR) Family p 98.87
PLN03232 1495 ABC transporter C family member; Provisional 98.84
PLN03130 1622 ABC transporter C family member; Provisional 98.84
PLN03073718 ABC transporter F family; Provisional 98.83
TIGR00957 1522 MRP_assoc_pro multi drug resistance-associated pro 98.81
cd03271261 ABC_UvrA_II The excision repair protein UvrA domai 98.81
cd03274212 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC protein 98.78
cd03279213 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complex 98.78
KOG0059885 consensus Lipid exporter ABCA1 and related protein 98.76
KOG0062582 consensus ATPase component of ABC transporters wit 98.75
TIGR01271 1490 CFTR_protein cystic fibrosis transmembrane conduct 98.75
PF07652148 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR 98.74
COG4615546 PvdE ABC-type siderophore export system, fused ATP 98.72
KOG0060659 consensus Long-chain acyl-CoA transporter, ABC sup 98.71
cd03276198 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC protein 98.7
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification] Back     alignment and domain information 
Probab=100.00  E-value=8e-117  Score=918.33  Aligned_cols=502  Identities=57%  Similarity=0.973  Sum_probs=482.0

Q ss_pred             HHHHHHHHhcCCCChHHHHHHHHHHhcCCEEEEEcCCCCchhhhhhhhhhcCccCCChhhcCceEEEEecCcccccccHH
Q 008221           54 RYYEILEKRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVS  133 (573)
Q Consensus        54 ~~~~~l~~~~~lp~~~~q~~~i~~i~~g~~v~i~G~tGSGKTT~l~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~  133 (573)
                      ....+.+.|..||++..+.+++..+.++++++|+|+|||||||++||++.+.....      ...|.||||||++++++|
T Consensus        39 ~~~~i~~qR~~LPI~~~r~~il~~ve~nqvlIviGeTGsGKSTQipQyL~eaG~~~------~g~I~~TQPRRVAavslA  112 (674)
T KOG0922|consen   39 TNLSIQEQRESLPIYKYRDQILYAVEDNQVLIVIGETGSGKSTQIPQYLAEAGFAS------SGKIACTQPRRVAAVSLA  112 (674)
T ss_pred             cccCHHHhhccCCHHHHHHHHHHHHHHCCEEEEEcCCCCCccccHhHHHHhccccc------CCcEEeecCchHHHHHHH
Confidence            34556677899999999999999999999999999999999999999999877622      233999999999999999


Q ss_pred             HHHHHhhhhcccchhceeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeCCCcCcccHHHHHHHHHHHHHh
Q 008221          134 RRVAEEMDVTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDEAHERTLATDVLFGLLKEVLKN  213 (573)
Q Consensus       134 ~~v~~~~~~~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDEa~~r~~~~d~ll~~l~~l~~~  213 (573)
                      ++|+++++..+|+.|||.+||++..+.+++|.|+|+|+++|.++.+++|+++++|||||||||++.+|.++++||.+.++
T Consensus       113 ~RVAeE~~~~lG~~VGY~IRFed~ts~~TrikymTDG~LLRE~l~Dp~LskYsvIIlDEAHERsl~TDiLlGlLKki~~~  192 (674)
T KOG0922|consen  113 KRVAEEMGCQLGEEVGYTIRFEDSTSKDTRIKYMTDGMLLREILKDPLLSKYSVIILDEAHERSLHTDILLGLLKKILKK  192 (674)
T ss_pred             HHHHHHhCCCcCceeeeEEEecccCCCceeEEEecchHHHHHHhcCCccccccEEEEechhhhhhHHHHHHHHHHHHHhc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcEEEEecccccHHHHHchhCCCCeeeecCcccCCcccccCCCchhHHHHHHHHHHHHhhcCCCCCEEEecCcHHHHH
Q 008221          214 RPDLKLVVMSATLEAEKFQGYFYGAPLMKVPGRLHPVEIFYTQEPERDYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIE  293 (573)
Q Consensus       214 ~~~~~iil~SATl~~~~~~~~~~~~~~i~v~g~~~~v~~~y~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~~~~~i~  293 (573)
                      ++++++|+||||+++++|++||+++|++.|+|+.|||+++|.+.+..||+++++.++.+||..+++|+|||||+|++||+
T Consensus       193 R~~LklIimSATlda~kfS~yF~~a~i~~i~GR~fPVei~y~~~p~~dYv~a~~~tv~~Ih~~E~~GDILvFLtGqeEIe  272 (674)
T KOG0922|consen  193 RPDLKLIIMSATLDAEKFSEYFNNAPILTIPGRTFPVEILYLKEPTADYVDAALITVIQIHLTEPPGDILVFLTGQEEIE  272 (674)
T ss_pred             CCCceEEEEeeeecHHHHHHHhcCCceEeecCCCCceeEEeccCCchhhHHHHHHHHHHHHccCCCCCEEEEeCCHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCCCCCCCCceEEEeecccccccccCCeEEEEcCCcc
Q 008221          294 DACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFA  373 (573)
Q Consensus       294 ~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kvllaT~iae~gitI~~V~~VId~g~~  373 (573)
                      .+++.|.+.........+. .++|+||.|+.++|.++|++.+.|.       ||||+||||||+|||||||.||||+|++
T Consensus       273 ~~~~~l~e~~~~~~~~~~~-~~lply~aL~~e~Q~rvF~p~p~g~-------RKvIlsTNIAETSlTI~GI~YVVDsG~v  344 (674)
T KOG0922|consen  273 AACELLRERAKSLPEDCPE-LILPLYGALPSEEQSRVFDPAPPGK-------RKVILSTNIAETSLTIDGIRYVVDSGFV  344 (674)
T ss_pred             HHHHHHHHHhhhccccCcc-eeeeecccCCHHHhhccccCCCCCc-------ceEEEEcceeeeeEEecceEEEEcCCce
Confidence            9999999887666555545 7899999999999999999999998       9999999999999999999999999999


Q ss_pred             cceeecccCCcccceeeeccHhhHHHhccccCCCCCCeEEeccchhhhhhhcCCCChhhhhccCchhHHHHHHHcCCCcc
Q 008221          374 KQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTEKSFNNDLQPQTYPEILRSNLANTVLTLKKLGIDDL  453 (573)
Q Consensus       374 k~~~~d~~~~~~~l~~~p~s~~~~~qR~GRaGR~~~G~~~~l~t~~~~~~~~~~~~~pei~r~~l~~~~L~~k~~~~~~~  453 (573)
                      |++.|||..++.+|.++|+|++++.||+|||||++||+|||||++++| +.|++.++|||+|++|...+|++|++|++|+
T Consensus       345 K~~~y~p~~g~~~L~v~~ISkasA~QRaGRAGRt~pGkcyRLYte~~~-~~~~~~~~PEI~R~~Ls~~vL~Lkalgi~d~  423 (674)
T KOG0922|consen  345 KQKKYNPRTGLDSLIVVPISKASANQRAGRAGRTGPGKCYRLYTESAY-DKMPLQTVPEIQRVNLSSAVLQLKALGINDP  423 (674)
T ss_pred             EEEeeccccCccceeEEechHHHHhhhcccCCCCCCceEEEeeeHHHH-hhcccCCCCceeeechHHHHHHHHhcCCCCc
Confidence            999999999999999999999999999999999999999999999999 7999999999999999999999999999999


Q ss_pred             ccccCCCCCcHHHHHHHHHHHHHcCCccCCCCcCh-hhhhhhcCCCChhhhhhhhhCCCCCCHHHHHHHHHhhcCCCccc
Q 008221          454 VHFDFMDPPAPETLMRALEVLNYLGALDDDGNLTE-MGEKMSEFPLDPQMSKMLVESPKYNCSNEILSISAMLSVPNCFV  532 (573)
Q Consensus       454 ~~~~~~~pP~~~~~~~a~~~L~~lgald~~~~lT~-lG~~~~~lp~~p~~~~~l~~~~~~~c~~~~~~i~a~l~~~~~f~  532 (573)
                      ..|+|+|||+++++..|++.|..+||||++|.||. +|+.|+.+|++|.++|+|+.+..++|.+|+++|||+|++++.|.
T Consensus       424 l~F~f~d~P~~~~l~~AL~~L~~lgald~~g~lt~p~G~~ma~~Pl~p~lsk~ll~s~~~gc~~e~l~i~a~Lsv~~~f~  503 (674)
T KOG0922|consen  424 LRFPFIDPPPPEALEEALEELYSLGALDDRGKLTSPLGRQMAELPLEPHLSKMLLKSSELGCSEEILTIAAMLSVQSVFS  503 (674)
T ss_pred             ccCCCCCCCChHHHHHHHHHHHhcCcccCcCCcCchHHhhhhhcCCCcchhhhhhhccccCCcchhhhheeeeeccceec
Confidence            99999999999999999999999999999999998 99999999999999999999999999999999999999999999


Q ss_pred             CChhhHHH-HHHHHhhhCCCCChHHHHHHHHHHHHHcCc
Q 008221          533 RPREAQKA-ADEAKARFGHIDGDHLTLLNVYHAYKQNSK  570 (573)
Q Consensus       533 ~~~~~~~~-~~~~~~~~~~~~sD~~~~l~~~~~~~~~~~  570 (573)
                      +|.+.+.+ ++..+.+|.+.+|||+|+||+|+.|.+++.
T Consensus       504 ~p~~~~~~~a~~~~~kf~~~eGDh~tlL~vy~~~~~~~~  542 (674)
T KOG0922|consen  504 RPKDKKAEDADRKRAKFANPEGDHLTLLNVYESWKENGT  542 (674)
T ss_pred             CccchhhhhhhHHHHhhcCcccCHHHHHHHHHHHHhcCC
Confidence            99887766 889999999999999999999999998754

>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair] Back     alignment and domain information
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification] Back     alignment and domain information
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional Back     alignment and domain information
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA Back     alignment and domain information
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB Back     alignment and domain information
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional Back     alignment and domain information
>PHA02653 RNA helicase NPH-II; Provisional Back     alignment and domain information
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription] Back     alignment and domain information
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification] Back     alignment and domain information
>KOG0343 consensus RNA Helicase [RNA processing and modification] Back     alignment and domain information
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional Back     alignment and domain information
>PTZ00110 helicase; Provisional Back     alignment and domain information
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional Back     alignment and domain information
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional Back     alignment and domain information
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification] Back     alignment and domain information
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional Back     alignment and domain information
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional Back     alignment and domain information
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional Back     alignment and domain information
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional Back     alignment and domain information
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional Back     alignment and domain information
>PRK01172 ski2-like helicase; Provisional Back     alignment and domain information
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>PTZ00424 helicase 45; Provisional Back     alignment and domain information
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0347 consensus RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification] Back     alignment and domain information
>PRK02362 ski2-like helicase; Provisional Back     alignment and domain information
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase Back     alignment and domain information
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG0346 consensus RNA helicase [RNA processing and modification] Back     alignment and domain information
>PRK00254 ski2-like helicase; Provisional Back     alignment and domain information
>KOG0334 consensus RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG4284 consensus DEAD box protein [Transcription] Back     alignment and domain information
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family Back     alignment and domain information
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype Back     alignment and domain information
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional Back     alignment and domain information
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional Back     alignment and domain information
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>PRK13767 ATP-dependent helicase; Provisional Back     alignment and domain information
>TIGR01389 recQ ATP-dependent DNA helicase RecQ Back     alignment and domain information
>TIGR00580 mfd transcription-repair coupling factor (mfd) Back     alignment and domain information
>PRK10689 transcription-repair coupling factor; Provisional Back     alignment and domain information
>PRK10917 ATP-dependent DNA helicase RecG; Provisional Back     alignment and domain information
>TIGR00643 recG ATP-dependent DNA helicase RecG Back     alignment and domain information
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only] Back     alignment and domain information
>TIGR01587 cas3_core CRISPR-associated helicase Cas3 Back     alignment and domain information
>COG1201 Lhr Lhr-like helicases [General function prediction only] Back     alignment and domain information
>PRK09751 putative ATP-dependent helicase Lhr; Provisional Back     alignment and domain information
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type Back     alignment and domain information
>PRK09401 reverse gyrase; Reviewed Back     alignment and domain information
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] Back     alignment and domain information
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>COG1204 Superfamily II helicase [General function prediction only] Back     alignment and domain information
>PRK14701 reverse gyrase; Provisional Back     alignment and domain information
>PRK12898 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification] Back     alignment and domain information
>PHA02558 uvsW UvsW helicase; Provisional Back     alignment and domain information
>PRK13766 Hef nuclease; Provisional Back     alignment and domain information
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] Back     alignment and domain information
>TIGR01054 rgy reverse gyrase Back     alignment and domain information
>PRK09200 preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>TIGR03714 secA2 accessory Sec system translocase SecA2 Back     alignment and domain information
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] Back     alignment and domain information
>KOG0354 consensus DEAD-box like helicase [General function prediction only] Back     alignment and domain information
>PRK09694 helicase Cas3; Provisional Back     alignment and domain information
>TIGR00963 secA preprotein translocase, SecA subunit Back     alignment and domain information
>PRK05580 primosome assembly protein PriA; Validated Back     alignment and domain information
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] Back     alignment and domain information
>TIGR00603 rad25 DNA repair helicase rad25 Back     alignment and domain information
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription] Back     alignment and domain information
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair] Back     alignment and domain information
>PF04408 HA2: Helicase associated domain (HA2); InterPro: IPR007502 This presumed domain is about 90 amino acid residues in length Back     alignment and domain information
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification] Back     alignment and domain information
>TIGR00595 priA primosomal protein N' Back     alignment and domain information
>PRK04914 ATP-dependent helicase HepA; Validated Back     alignment and domain information
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair] Back     alignment and domain information
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification] Back     alignment and domain information
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] Back     alignment and domain information
>smart00847 HA2 Helicase associated domain (HA2) Add an annotation Back     alignment and domain information
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] Back     alignment and domain information
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] Back     alignment and domain information
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] Back     alignment and domain information
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] Back     alignment and domain information
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional Back     alignment and domain information
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] Back     alignment and domain information
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only] Back     alignment and domain information
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification] Back     alignment and domain information
>PRK13104 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] Back     alignment and domain information
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms] Back     alignment and domain information
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] Back     alignment and domain information
>TIGR00631 uvrb excinuclease ABC, B subunit Back     alignment and domain information
>PRK05298 excinuclease ABC subunit B; Provisional Back     alignment and domain information
>PRK12906 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] Back     alignment and domain information
>cd00268 DEADc DEAD-box helicases Back     alignment and domain information
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] Back     alignment and domain information
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] Back     alignment and domain information
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] Back     alignment and domain information
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] Back     alignment and domain information
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] Back     alignment and domain information
>PRK12904 preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification] Back     alignment and domain information
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] Back     alignment and domain information
>PRK12900 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process Back     alignment and domain information
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] Back     alignment and domain information
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] Back     alignment and domain information
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein Back     alignment and domain information
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional Back     alignment and domain information
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit Back     alignment and domain information
>PRK13537 nodulation ABC transporter NodI; Provisional Back     alignment and domain information
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) Back     alignment and domain information
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional Back     alignment and domain information
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein Back     alignment and domain information
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only] Back     alignment and domain information
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] Back     alignment and domain information
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein Back     alignment and domain information
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] Back     alignment and domain information
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota Back     alignment and domain information
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively Back     alignment and domain information
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules Back     alignment and domain information
>PRK13536 nodulation factor exporter subunit NodI; Provisional Back     alignment and domain information
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed Back     alignment and domain information
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup Back     alignment and domain information
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit Back     alignment and domain information
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional Back     alignment and domain information
>TIGR02673 FtsE cell division ATP-binding protein FtsE Back     alignment and domain information
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system Back     alignment and domain information
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] Back     alignment and domain information
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional Back     alignment and domain information
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP Back     alignment and domain information
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional Back     alignment and domain information
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] Back     alignment and domain information
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins Back     alignment and domain information
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit Back     alignment and domain information
>PRK12899 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional Back     alignment and domain information
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional Back     alignment and domain information
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed Back     alignment and domain information
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein Back     alignment and domain information
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional Back     alignment and domain information
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein Back     alignment and domain information
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI Back     alignment and domain information
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import Back     alignment and domain information
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity Back     alignment and domain information
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group Back     alignment and domain information
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional Back     alignment and domain information
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional Back     alignment and domain information
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport Back     alignment and domain information
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional Back     alignment and domain information
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota Back     alignment and domain information
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity Back     alignment and domain information
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin Back     alignment and domain information
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK Back     alignment and domain information
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake Back     alignment and domain information
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] Back     alignment and domain information
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane Back     alignment and domain information
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional Back     alignment and domain information
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT Back     alignment and domain information
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional Back     alignment and domain information
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine Back     alignment and domain information
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively Back     alignment and domain information
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea Back     alignment and domain information
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance Back     alignment and domain information
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain Back     alignment and domain information
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system Back     alignment and domain information
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters Back     alignment and domain information
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein Back     alignment and domain information
>PRK13107 preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment Back     alignment and domain information
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein Back     alignment and domain information
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA Back     alignment and domain information
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional Back     alignment and domain information
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional Back     alignment and domain information
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids Back     alignment and domain information
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional Back     alignment and domain information
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional Back     alignment and domain information
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional Back     alignment and domain information
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional Back     alignment and domain information
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D Back     alignment and domain information
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional Back     alignment and domain information
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment Back     alignment and domain information
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional Back     alignment and domain information
>PRK10908 cell division protein FtsE; Provisional Back     alignment and domain information
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional Back     alignment and domain information
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids Back     alignment and domain information
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein Back     alignment and domain information
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor Back     alignment and domain information
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos) Back     alignment and domain information
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional Back     alignment and domain information
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] Back     alignment and domain information
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional Back     alignment and domain information
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional Back     alignment and domain information
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter Back     alignment and domain information
>PRK13651 cobalt transporter ATP-binding subunit; Provisional Back     alignment and domain information
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional Back     alignment and domain information
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional Back     alignment and domain information
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional Back     alignment and domain information
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional Back     alignment and domain information
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional Back     alignment and domain information
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA Back     alignment and domain information
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed Back     alignment and domain information
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional Back     alignment and domain information
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) Back     alignment and domain information
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit Back     alignment and domain information
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional Back     alignment and domain information
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional Back     alignment and domain information
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional Back     alignment and domain information
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein Back     alignment and domain information
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters Back     alignment and domain information
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional Back     alignment and domain information
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional Back     alignment and domain information
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB Back     alignment and domain information
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors Back     alignment and domain information
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds Back     alignment and domain information
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD Back     alignment and domain information
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional Back     alignment and domain information
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional Back     alignment and domain information
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information
>PRK13633 cobalt transporter ATP-binding subunit; Provisional Back     alignment and domain information
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional Back     alignment and domain information
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional Back     alignment and domain information
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional Back     alignment and domain information
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family Back     alignment and domain information
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional Back     alignment and domain information
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis Back     alignment and domain information
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional Back     alignment and domain information
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases Back     alignment and domain information
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional Back     alignment and domain information
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional Back     alignment and domain information
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional Back     alignment and domain information
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE Back     alignment and domain information
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional Back     alignment and domain information
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE Back     alignment and domain information
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR) Back     alignment and domain information
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional Back     alignment and domain information
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters Back     alignment and domain information
>PRK10762 D-ribose transporter ATP binding protein; Provisional Back     alignment and domain information
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D Back     alignment and domain information
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional Back     alignment and domain information
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component Back     alignment and domain information
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional Back     alignment and domain information
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional Back     alignment and domain information
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion Back     alignment and domain information
>cd03299 ABC_ModC_like Archeal protein closely related to ModC Back     alignment and domain information
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional Back     alignment and domain information
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional Back     alignment and domain information
>PRK09700 D-allose transporter ATP-binding protein; Provisional Back     alignment and domain information
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein Back     alignment and domain information
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit Back     alignment and domain information
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional Back     alignment and domain information
>PRK03695 vitamin B12-transporter ATPase; Provisional Back     alignment and domain information
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] Back     alignment and domain information
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake Back     alignment and domain information
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export Back     alignment and domain information
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] Back     alignment and domain information
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein Back     alignment and domain information
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional Back     alignment and domain information
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component Back     alignment and domain information
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos) Back     alignment and domain information
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional Back     alignment and domain information
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome Back     alignment and domain information
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] Back     alignment and domain information
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional Back     alignment and domain information
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional Back     alignment and domain information
>TIGR01978 sufC FeS assembly ATPase SufC Back     alignment and domain information
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional Back     alignment and domain information
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional Back     alignment and domain information
>PRK13549 xylose transporter ATP-binding subunit; Provisional Back     alignment and domain information
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed Back     alignment and domain information
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only] Back     alignment and domain information
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional Back     alignment and domain information
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK Back     alignment and domain information
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] Back     alignment and domain information
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient Back     alignment and domain information
>PRK10261 glutathione transporter ATP-binding protein; Provisional Back     alignment and domain information
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters Back     alignment and domain information
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit Back     alignment and domain information
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional Back     alignment and domain information
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only] Back     alignment and domain information
>smart00490 HELICc helicase superfamily c-terminal domain Back     alignment and domain information
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional Back     alignment and domain information
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein Back     alignment and domain information
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL Back     alignment and domain information
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] Back     alignment and domain information
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E Back     alignment and domain information
>PRK10261 glutathione transporter ATP-binding protein; Provisional Back     alignment and domain information
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1) Back     alignment and domain information
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional Back     alignment and domain information
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules Back     alignment and domain information
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] Back     alignment and domain information
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] Back     alignment and domain information
>PRK10762 D-ribose transporter ATP binding protein; Provisional Back     alignment and domain information
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional Back     alignment and domain information
>cd03290 ABCC_SUR1_N The SUR domain 1 Back     alignment and domain information
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 Back     alignment and domain information
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids Back     alignment and domain information
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional Back     alignment and domain information
>PRK14242 phosphate transporter ATP-binding protein; Provisional Back     alignment and domain information
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1 Back     alignment and domain information
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins Back     alignment and domain information
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein Back     alignment and domain information
>PRK09700 D-allose transporter ATP-binding protein; Provisional Back     alignment and domain information
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea Back     alignment and domain information
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional Back     alignment and domain information
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit Back     alignment and domain information
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional Back     alignment and domain information
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional Back     alignment and domain information
>CHL00131 ycf16 sulfate ABC transporter protein; Validated Back     alignment and domain information
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD Back     alignment and domain information
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] Back     alignment and domain information
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional Back     alignment and domain information
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional Back     alignment and domain information
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional Back     alignment and domain information
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein Back     alignment and domain information
>PRK13409 putative ATPase RIL; Provisional Back     alignment and domain information
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] Back     alignment and domain information
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria Back     alignment and domain information
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional Back     alignment and domain information
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 Back     alignment and domain information
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional Back     alignment and domain information
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional Back     alignment and domain information
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2 Back     alignment and domain information
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional Back     alignment and domain information
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional Back     alignment and domain information
>PRK14241 phosphate transporter ATP-binding protein; Provisional Back     alignment and domain information
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed Back     alignment and domain information
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional Back     alignment and domain information
>TIGR01257 rim_protein retinal-specific rim ABC transporter Back     alignment and domain information
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional Back     alignment and domain information
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional Back     alignment and domain information
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein Back     alignment and domain information
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C Back     alignment and domain information
>PRK13549 xylose transporter ATP-binding subunit; Provisional Back     alignment and domain information
>PRK14240 phosphate transporter ATP-binding protein; Provisional Back     alignment and domain information
>PRK14239 phosphate transporter ATP-binding protein; Provisional Back     alignment and domain information
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C Back     alignment and domain information
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional Back     alignment and domain information
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional Back     alignment and domain information
>PRK14235 phosphate transporter ATP-binding protein; Provisional Back     alignment and domain information
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional Back     alignment and domain information
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export Back     alignment and domain information
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional Back     alignment and domain information
>TIGR01257 rim_protein retinal-specific rim ABC transporter Back     alignment and domain information
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional Back     alignment and domain information
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional Back     alignment and domain information
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional Back     alignment and domain information
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional Back     alignment and domain information
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein Back     alignment and domain information
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional Back     alignment and domain information
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional Back     alignment and domain information
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional Back     alignment and domain information
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit Back     alignment and domain information
>PRK14243 phosphate transporter ATP-binding protein; Provisional Back     alignment and domain information
>PRK14237 phosphate transporter ATP-binding protein; Provisional Back     alignment and domain information
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional Back     alignment and domain information
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional Back     alignment and domain information
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] Back     alignment and domain information
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family Back     alignment and domain information
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional Back     alignment and domain information
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional Back     alignment and domain information
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth Back     alignment and domain information
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional Back     alignment and domain information
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed Back     alignment and domain information
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family Back     alignment and domain information
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed Back     alignment and domain information
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional Back     alignment and domain information
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein Back     alignment and domain information
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed Back     alignment and domain information
>PLN03211 ABC transporter G-25; Provisional Back     alignment and domain information
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] Back     alignment and domain information
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional Back     alignment and domain information
>PRK13409 putative ATPase RIL; Provisional Back     alignment and domain information
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional Back     alignment and domain information
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] Back     alignment and domain information
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional Back     alignment and domain information
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only] Back     alignment and domain information
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional Back     alignment and domain information
>PRK14238 phosphate transporter ATP-binding protein; Provisional Back     alignment and domain information
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional Back     alignment and domain information
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional Back     alignment and domain information
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein Back     alignment and domain information
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional Back     alignment and domain information
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional Back     alignment and domain information
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] Back     alignment and domain information
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional Back     alignment and domain information
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] Back     alignment and domain information
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA Back     alignment and domain information
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor Back     alignment and domain information
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] Back     alignment and domain information
>PRK15064 ABC transporter ATP-binding protein; Provisional Back     alignment and domain information
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter Back     alignment and domain information
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family Back     alignment and domain information
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules Back     alignment and domain information
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional Back     alignment and domain information
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems Back     alignment and domain information
>cd03288 ABCC_SUR2 The SUR domain 2 Back     alignment and domain information
>PRK14236 phosphate transporter ATP-binding protein; Provisional Back     alignment and domain information
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional Back     alignment and domain information
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional Back     alignment and domain information
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein Back     alignment and domain information
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter Back     alignment and domain information
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1 Back     alignment and domain information
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional Back     alignment and domain information
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional Back     alignment and domain information
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional Back     alignment and domain information
>PRK15064 ABC transporter ATP-binding protein; Provisional Back     alignment and domain information
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function Back     alignment and domain information
>COG1110 Reverse gyrase [DNA replication, recombination, and repair] Back     alignment and domain information
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only] Back     alignment and domain information
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein Back     alignment and domain information
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional Back     alignment and domain information
>TIGR01192 chvA glucan exporter ATP-binding protein Back     alignment and domain information
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei Back     alignment and domain information
>PLN03232 ABC transporter C family member; Provisional Back     alignment and domain information
>PLN03130 ABC transporter C family member; Provisional Back     alignment and domain information
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) Back     alignment and domain information
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion Back     alignment and domain information
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only] Back     alignment and domain information
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family Back     alignment and domain information
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional Back     alignment and domain information
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed Back     alignment and domain information
>PTZ00243 ABC transporter; Provisional Back     alignment and domain information
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family Back     alignment and domain information
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] Back     alignment and domain information
>PTZ00265 multidrug resistance protein (mdr1); Provisional Back     alignment and domain information
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) Back     alignment and domain information
>PLN03140 ABC transporter G family member; Provisional Back     alignment and domain information
>PRK10636 putative ABC transporter ATP-binding protein; Provisional Back     alignment and domain information
>PRK11147 ABC transporter ATPase component; Reviewed Back     alignment and domain information
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] Back     alignment and domain information
>PTZ00265 multidrug resistance protein (mdr1); Provisional Back     alignment and domain information
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein Back     alignment and domain information
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional Back     alignment and domain information
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative Back     alignment and domain information
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] Back     alignment and domain information
>PRK11147 ABC transporter ATPase component; Reviewed Back     alignment and domain information
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification] Back     alignment and domain information
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK10636 putative ABC transporter ATP-binding protein; Provisional Back     alignment and domain information
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only] Back     alignment and domain information
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] Back     alignment and domain information
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] Back     alignment and domain information
>PLN03073 ABC transporter F family; Provisional Back     alignment and domain information
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains Back     alignment and domain information
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3 Back     alignment and domain information
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism] Back     alignment and domain information
>smart00487 DEXDc DEAD-like helicases superfamily Back     alignment and domain information
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PLN03140 ABC transporter G family member; Provisional Back     alignment and domain information
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] Back     alignment and domain information
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] Back     alignment and domain information
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein Back     alignment and domain information
>PLN03232 ABC transporter C family member; Provisional Back     alignment and domain information
>PLN03130 ABC transporter C family member; Provisional Back     alignment and domain information
>PLN03073 ABC transporter F family; Provisional Back     alignment and domain information
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) Back     alignment and domain information
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion Back     alignment and domain information
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains Back     alignment and domain information
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends Back     alignment and domain information
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only] Back     alignment and domain information
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) Back     alignment and domain information
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain Back     alignment and domain information
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only] Back     alignment and domain information
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query573
3kx2_B 767 Crystal Structure Of Prp43p In Complex With Adp Len 0.0
2xau_A 773 Crystal Structure Of The Prp43p Deah-Box Rna Helica 0.0
3i4u_A 270 Crystal Structure Analysis Of A Helicase Associated 3e-27
3llm_A235 Crystal Structure Analysis Of A Rna Helicase Length 2e-24
>pdb|3KX2|B Chain B, Crystal Structure Of Prp43p In Complex With Adp Length = 767 Back     alignment and structure 
Iteration: 1

 Score =  682 bits (1759), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 337/532 (63%), Positives = 414/532 (77%), Gaps = 16/532 (3%)
Query: 43  INRWNGKPYSQRYYEILEKRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFV 102
           IN + G+ ++ +Y +IL+ R+ LPV  Q++EFL++ + NQ+++ VGETGSGKTTQIPQFV
Sbjct: 71  INPFTGREFTPKYVDILKIRRELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTTQIPQFV 130
Query: 103 LEGVDIETPDRRRKMMIACTQPXXXXXXXXXXXXXEEMDVTIGEEVGYSIRFEDCSSART 162
           L     E P       +ACTQP             EEMDV +GEEVGYSIRFE+ +S +T
Sbjct: 131 LFD---EMP-HLENTQVACTQPRRVAAMSVAQRVAEEMDVKLGEEVGYSIRFENKTSNKT 186
Query: 163 VLKYLTDGMLLREAMTDPLLERYKVIVLDEAHERTLATDVLFGLLKEVLKNRPDLKLVVM 222
           +LKY+TDGMLLREAM D  L RY  I+LDEAHERTLATD+L GLLK+V+K RPDLK+++M
Sbjct: 187 ILKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIM 246
Query: 223 SATLEAEKFQGYFYGAPLMKVPGRLHPVEIFYTQEPERDYLEAAIRTVVQIHMCEPSGDI 282
           SATL+AEKFQ YF  APL+ VPGR +PVE++YT E +RDYL++AIRTV+QIH  E +GDI
Sbjct: 247 SATLDAEKFQRYFNDAPLLAVPGRTYPVELYYTPEFQRDYLDSAIRTVLQIHATEEAGDI 306
Query: 283 LVFLTGEEEIEDACRKITKEITNMGDQV------GPVKVVPLYSTLPPAMQQKIFEXXXX 336
           L+FLTGE+EIEDA RKI+ E    GDQ+      GP+ V PLY +LPP  QQ+IFE    
Sbjct: 307 LLFLTGEDEIEDAVRKISLE----GDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPE 362
Query: 337 XXXXXXXXXRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKAS 396
                    RK+V+STNIAETSLTIDGIVYV+DPGF+KQKVYNPR+RVESLLVSPISKAS
Sbjct: 363 SHNGRPG--RKVVISTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKAS 420
Query: 397 AHQRSGRAGRTQPGKCFRLYTEKSFNNDLQPQTYPEILRSNLANTVLTLKKLGIDDLVHF 456
           A QR+GRAGRT+PGKCFRLYTE++F  +L  Q+YPEILRSNL++TVL LKKLGIDDLVHF
Sbjct: 421 AQQRAGRAGRTRPGKCFRLYTEEAFQKELIEQSYPEILRSNLSSTVLELKKLGIDDLVHF 480
Query: 457 DFMDPPAPETLMRALEVLNYLGALDDDGNLTEMGEKMSEFPLDPQMSKMLVESPKYNCSN 516
           DFMDPPAPET+MRALE LNYL  LDD+GNLT +G   S+FPLDP ++ ML+ S ++ CS 
Sbjct: 481 DFMDPPAPETMMRALEELNYLACLDDEGNLTPLGRLASQFPLDPMLAVMLIGSFEFQCSQ 540
Query: 517 EILSISAMLSVPNCFVRPREAQKAADEAKARFGHIDGDHLTLLNVYHAYKQN 568
           EIL+I AMLSVPN F+RP + +K AD+AK  F H DGDH+TLLNVYHA+K +
Sbjct: 541 EILTIVAMLSVPNVFIRPTKDKKRADDAKNIFAHPDGDHITLLNVYHAFKSD 592
>pdb|2XAU|A Chain A, Crystal Structure Of The Prp43p Deah-Box Rna Helicase In Complex With Adp Length = 773 Back     alignment and structure
>pdb|3I4U|A Chain A, Crystal Structure Analysis Of A Helicase Associated Domain Length = 270 Back     alignment and structure
>pdb|3LLM|A Chain A, Crystal Structure Analysis Of A Rna Helicase Length = 235 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query573
2xau_A 773 PRE-mRNA-splicing factor ATP-dependent RNA helica; 0.0
2z83_A459 Helicase/nucleoside triphosphatase; hydrolase, mem 1e-111
2jlq_A451 Serine protease subunit NS3; ribonucleoprotein, nu 1e-110
2v6i_A431 RNA helicase; membrane, hydrolase, transmembrane, 1e-109
3llm_A235 ATP-dependent RNA helicase A; alpha-beta-alpha, st 1e-107
2whx_A618 Serine protease/ntpase/helicase NS3; transcription 7e-99
2wv9_A673 Flavivirin protease NS2B regulatory subunit, FLAV 5e-98
3o8b_A666 HCV NS3 protease/helicase; ntpase, RNA, translocat 1e-96
1yks_A440 Genome polyprotein [contains: flavivirin protease 3e-95
3i4u_A 270 ATP-dependent RNA helicase DHX8; splicing, ATP-bin 6e-70
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-15
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-09
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* Length = 773 Back     alignment and structure
 Score =  982 bits (2541), Expect = 0.0
 Identities = 349/530 (65%), Positives = 430/530 (81%), Gaps = 8/530 (1%)

Query: 43  INRWNGKPYSQRYYEILEKRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFV 102
           IN + G+ ++ +Y +IL+ R+ LPV  Q++EFL++ + NQ+++ VGETGSGKTTQIPQFV
Sbjct: 71  INPFTGREFTPKYVDILKIRRELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTTQIPQFV 130

Query: 103 LEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDCSSART 162
           L     +         +ACTQPRRVAAMSV++RVAEEMDV +GEEVGYSIRFE+ +S +T
Sbjct: 131 LF----DEMPHLENTQVACTQPRRVAAMSVAQRVAEEMDVKLGEEVGYSIRFENKTSNKT 186

Query: 163 VLKYLTDGMLLREAMTDPLLERYKVIVLDEAHERTLATDVLFGLLKEVLKNRPDLKLVVM 222
           +LKY+TDGMLLREAM D  L RY  I+LDEAHERTLATD+L GLLK+V+K RPDLK+++M
Sbjct: 187 ILKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIM 246

Query: 223 SATLEAEKFQGYFYGAPLMKVPGRLHPVEIFYTQEPERDYLEAAIRTVVQIHMCEPSGDI 282
           SATL+AEKFQ YF  APL+ VPGR +PVE++YT E +RDYL++AIRTV+QIH  E +GDI
Sbjct: 247 SATLDAEKFQRYFNDAPLLAVPGRTYPVELYYTPEFQRDYLDSAIRTVLQIHATEEAGDI 306

Query: 283 LVFLTGEEEIEDACRKITKEITNMGDQ--VGPVKVVPLYSTLPPAMQQKIFEPAPPPSKE 340
           L+FLTGE+EIEDA RKI+ E   +  +   GP+ V PLY +LPP  QQ+IFEPAP     
Sbjct: 307 LLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPES--H 364

Query: 341 GGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQR 400
            G PGRK+V+STNIAETSLTIDGIVYV+DPGF+KQKVYNPR+RVESLLVSPISKASA QR
Sbjct: 365 NGRPGRKVVISTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQR 424

Query: 401 SGRAGRTQPGKCFRLYTEKSFNNDLQPQTYPEILRSNLANTVLTLKKLGIDDLVHFDFMD 460
           +GRAGRT+PGKCFRLYTE++F  +L  Q+YPEILRSNL++TVL LKKLGIDDLVHFDFMD
Sbjct: 425 AGRAGRTRPGKCFRLYTEEAFQKELIEQSYPEILRSNLSSTVLELKKLGIDDLVHFDFMD 484

Query: 461 PPAPETLMRALEVLNYLGALDDDGNLTEMGEKMSEFPLDPQMSKMLVESPKYNCSNEILS 520
           PPAPET+MRALE LNYL  LDD+GNLT +G   S+FPLDP ++ ML+ S ++ CS EIL+
Sbjct: 485 PPAPETMMRALEELNYLACLDDEGNLTPLGRLASQFPLDPMLAVMLIGSFEFQCSQEILT 544

Query: 521 ISAMLSVPNCFVRPREAQKAADEAKARFGHIDGDHLTLLNVYHAYKQNSK 570
           I AMLSVPN F+RP + +K AD+AK  F H DGDH+TLLNVYHA+K +  
Sbjct: 545 IVAMLSVPNVFIRPTKDKKRADDAKNIFAHPDGDHITLLNVYHAFKSDEA 594
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A Length = 459 Back     alignment and structure
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A Length = 451 Back     alignment and structure
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A Length = 431 Back     alignment and structure
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens} Length = 235 Back     alignment and structure
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A Length = 618 Back     alignment and structure
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus} Length = 673 Back     alignment and structure
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4a92_A* 1cu1_A 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A 8ohm_A 2f55_A 1jr6_A 1onb_A Length = 666 Back     alignment and structure
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A* Length = 440 Back     alignment and structure
>3i4u_A ATP-dependent RNA helicase DHX8; splicing, ATP-binding, hydrolase, mRNA processing, splicing, nucleotide-binding, nucleus, phosphoprotein, SPLI; 2.10A {Homo sapiens} Length = 270 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query573
2xau_A 773 PRE-mRNA-splicing factor ATP-dependent RNA helica; 100.0
2va8_A 715 SSO2462, SKI2-type helicase; hydrolase, DNA repair 100.0
2p6r_A 702 Afuhel308 helicase; protein-DNA complex, SF2 helic 100.0
2zj8_A 720 DNA helicase, putative SKI2-type helicase; RECA fo 100.0
2db3_A434 ATP-dependent RNA helicase VASA; DEAD-BOX, protein 100.0
3eiq_A414 Eukaryotic initiation factor 4A-I; PDCD4, anti-onc 100.0
2j0s_A410 ATP-dependent RNA helicase DDX48; mRNA processing, 100.0
2i4i_A417 ATP-dependent RNA helicase DDX3X; DEAD, structural 100.0
1s2m_A400 Putative ATP-dependent RNA helicase DHH1; ATP-bind 100.0
3fht_A412 ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box 100.0
3pey_A395 ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, A 100.0
3fmp_B479 ATP-dependent RNA helicase DDX19B; nuclear porin, 100.0
1hv8_A367 Putative ATP-dependent RNA helicase MJ0669; RNA-bi 100.0
1xti_A391 Probable ATP-dependent RNA helicase P47; alpha-bet 100.0
1fuu_A394 Yeast initiation factor 4A; IF4A, helicase, DEAD-b 100.0
3o8b_A666 HCV NS3 protease/helicase; ntpase, RNA, translocat 100.0
3i5x_A563 ATP-dependent RNA helicase MSS116; protein-RNA com 100.0
3sqw_A579 ATP-dependent RNA helicase MSS116, mitochondrial; 100.0
2v1x_A591 ATP-dependent DNA helicase Q1; DNA strand annealin 100.0
2z0m_A337 337AA long hypothetical ATP-dependent RNA helicase 100.0
2jlq_A451 Serine protease subunit NS3; ribonucleoprotein, nu 100.0
2z83_A459 Helicase/nucleoside triphosphatase; hydrolase, mem 100.0
3l9o_A 1108 ATP-dependent RNA helicase DOB1; REC-A fold, winge 100.0
2ykg_A696 Probable ATP-dependent RNA helicase DDX58; hydrola 100.0
2whx_A618 Serine protease/ntpase/helicase NS3; transcription 100.0
1oyw_A523 RECQ helicase, ATP-dependent DNA helicase; winged 100.0
3fho_A508 ATP-dependent RNA helicase DBP5; mRNA export, ATPa 100.0
4a2p_A556 RIG-I, retinoic acid inducible protein I; hydrolas 100.0
4f92_B 1724 U5 small nuclear ribonucleoprotein 200 kDa helica; 100.0
4a4z_A 997 Antiviral helicase SKI2; hydrolase, ATPase, mRNA d 100.0
3oiy_A414 Reverse gyrase helicase domain; topoisomerase, DNA 100.0
3rc3_A677 ATP-dependent RNA helicase SUPV3L1, mitochondrial; 99.98
3tbk_A555 RIG-I helicase domain; DECH helicase, ATP binding, 99.98
2wv9_A673 Flavivirin protease NS2B regulatory subunit, FLAV 99.97
1yks_A440 Genome polyprotein [contains: flavivirin protease 99.97
4a2q_A797 RIG-I, retinoic acid inducible protein I; hydrolas 99.97
2xgj_A 1010 ATP-dependent RNA helicase DOB1; hydrolase-RNA com 99.97
4f92_B 1724 U5 small nuclear ribonucleoprotein 200 kDa helica; 99.97
2v6i_A431 RNA helicase; membrane, hydrolase, transmembrane, 99.97
1tf5_A 844 Preprotein translocase SECA subunit; ATPase, helic 99.97
1wp9_A494 ATP-dependent RNA helicase, putative; ATPase, DNA 99.97
4a2w_A936 RIG-I, retinoic acid inducible protein I; hydrolas 99.97
4gl2_A699 Interferon-induced helicase C domain-containing P; 99.96
4ddu_A 1104 Reverse gyrase; topoisomerase, DNA supercoiling, a 99.96
1gku_B 1054 Reverse gyrase, TOP-RG; topoisomerase, DNA superco 99.96
1gm5_A780 RECG; helicase, replication restart; HET: DNA ADP; 99.96
2fsf_A 853 Preprotein translocase SECA subunit; ATPase, DNA-R 99.95
3eaq_A212 Heat resistant RNA dependent ATPase; DEAD box RNA 99.95
3i32_A300 Heat resistant RNA dependent ATPase; RNA helicase, 99.95
1nkt_A 922 Preprotein translocase SECA 1 subunit; preprotein 99.95
2eyq_A1151 TRCF, transcription-repair coupling factor; MFD, S 99.94
2fwr_A472 DNA repair protein RAD25; DNA unwinding, XPB, DNA 99.93
2oca_A510 DAR protein, ATP-dependent DNA helicase UVSW; ATP- 99.92
3llm_A235 ATP-dependent RNA helicase A; alpha-beta-alpha, st 99.92
3i4u_A 270 ATP-dependent RNA helicase DHX8; splicing, ATP-bin 99.92
3h1t_A590 Type I site-specific restriction-modification syst 99.89
2hjv_A163 ATP-dependent RNA helicase DBPA; parallel alpha-be 99.87
2rb4_A175 ATP-dependent RNA helicase DDX25; rossmann fold, s 99.86
1t5i_A172 C_terminal domain of A probable ATP-dependent RNA 99.86
1fuk_A165 Eukaryotic initiation factor 4A; helicase, DEAD-bo 99.86
2p6n_A191 ATP-dependent RNA helicase DDX41; DEAD, structural 99.85
2jgn_A185 DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosp 99.85
3jux_A822 Protein translocase subunit SECA; protein transloc 99.83
3dmq_A 968 RNA polymerase-associated protein RAPA; SWF2/SNF2, 99.83
2yjt_D170 ATP-dependent RNA helicase SRMB, regulator of ribo 99.7
2d7d_A661 Uvrabc system protein B; helicase, protein-DNA-ADP 99.79
1c4o_A664 DNA nucleotide excision repair enzyme UVRB; uvrabc 99.78
1qde_A224 EIF4A, translation initiation factor 4A; DEAD box 99.78
3fmo_B300 ATP-dependent RNA helicase DDX19B; nuclear porin, 99.78
1z63_A500 Helicase of the SNF2/RAD54 hamily; protein-DNA com 99.77
2w00_A 1038 HSDR, R.ECOR124I; ATP-binding, DNA-binding, restri 99.77
1q0u_A219 Bstdead; DEAD protein, RNA binding protein; 1.85A 99.76
3bor_A237 Human initiation factor 4A-II; translation initiat 99.76
3ber_A249 Probable ATP-dependent RNA helicase DDX47; DEAD, A 99.76
3fe2_A242 Probable ATP-dependent RNA helicase DDX5; DEAD, AD 99.76
1vec_A206 ATP-dependent RNA helicase P54; DEAD-box protein, 99.75
2oxc_A230 Probable ATP-dependent RNA helicase DDX20; DEAD, s 99.74
2pl3_A236 Probable ATP-dependent RNA helicase DDX10; DEAD, s 99.74
1t6n_A220 Probable ATP-dependent RNA helicase; RECA-like fol 99.73
3dkp_A245 Probable ATP-dependent RNA helicase DDX52; DEAD, A 99.73
3iuy_A228 Probable ATP-dependent RNA helicase DDX53; REC-A-l 99.72
2gxq_A207 Heat resistant RNA dependent ATPase; RNA helicase, 99.71
3ly5_A262 ATP-dependent RNA helicase DDX18; alpha-beta, stru 99.7
1wrb_A253 DJVLGB; RNA helicase, DEAD BOX, VASA, structural g 99.7
1z3i_X644 Similar to RAD54-like; recombination ATPase helica 99.66
3tui_C366 Methionine import ATP-binding protein METN; ABC-tr 99.63
3tif_A235 Uncharacterized ABC transporter ATP-binding prote; 99.62
3fvq_A359 Fe(3+) IONS import ATP-binding protein FBPC; nucle 99.61
3rlf_A381 Maltose/maltodextrin import ATP-binding protein M; 99.61
2pcj_A224 ABC transporter, lipoprotein-releasing system ATP- 99.6
3mwy_W800 Chromo domain-containing protein 1; SWI2/SNF2 ATPa 99.6
3gfo_A275 Cobalt import ATP-binding protein CBIO 1; structur 99.59
1sgw_A214 Putative ABC transporter; structural genomics, P p 99.58
4g1u_C266 Hemin import ATP-binding protein HMUV; membrane tr 99.58
3d31_A348 Sulfate/molybdate ABC transporter, ATP-binding pro 99.58
1z47_A355 CYSA, putative ABC-transporter ATP-binding protein 99.58
2olj_A263 Amino acid ABC transporter; ABC domain, ATPase, hy 99.57
1vpl_A256 ABC transporter, ATP-binding protein; TM0544, stru 99.57
2yyz_A359 Sugar ABC transporter, ATP-binding protein; sugar 99.57
1g6h_A257 High-affinity branched-chain amino acid transport 99.56
2it1_A362 362AA long hypothetical maltose/maltodextrin trans 99.56
1oxx_K353 GLCV, glucose, ABC transporter, ATP binding protei 99.56
1ji0_A240 ABC transporter; ATP binding protein, structural g 99.56
1b0u_A262 Histidine permease; ABC transporter, transport pro 99.56
1v43_A372 Sugar-binding transport ATP-binding protein; ATPas 99.55
1g29_1372 MALK, maltose transport protein MALK; ATPase, acti 99.55
2onk_A240 Molybdate/tungstate ABC transporter, ATP-binding p 99.53
2yz2_A266 Putative ABC transporter ATP-binding protein TM_0; 99.52
2nq2_C253 Hypothetical ABC transporter ATP-binding protein H 99.51
2ihy_A279 ABC transporter, ATP-binding protein; ATPase, ABC 99.5
2qi9_C249 Vitamin B12 import ATP-binding protein BTUD; inner 99.5
2ixe_A271 Antigen peptide transporter 1; ABC ATPase, hydrola 99.48
2ff7_A247 Alpha-hemolysin translocation ATP-binding protein 99.48
2d2e_A250 SUFC protein; ABC-ATPase, SUF protein, 310-helix, 99.46
3nh6_A306 ATP-binding cassette SUB-family B member 6, mitoc; 99.44
1mv5_A243 LMRA, multidrug resistance ABC transporter ATP-bin 99.43
2ipc_A 997 Preprotein translocase SECA subunit; nucleotide bi 99.43
2zu0_C267 Probable ATP-dependent transporter SUFC; iron-sulf 99.42
2ghi_A260 Transport protein; multidrug resistance protein, M 99.41
1z5z_A271 Helicase of the SNF2/RAD54 family; hydrolase, reco 99.41
2cbz_A237 Multidrug resistance-associated protein 1; ABC pro 99.38
2pjz_A263 Hypothetical protein ST1066; ATP binding protein, 99.38
3gd7_A390 Fusion complex of cystic fibrosis transmembrane co 99.36
3ozx_A538 RNAse L inhibitor; ATP binding cassette protein, h 99.35
2pze_A229 Cystic fibrosis transmembrane conductance regulat; 99.34
3bk7_A607 ABC transporter ATP-binding protein; ABC ATPase, i 99.33
1yqt_A538 RNAse L inhibitor; ATP-binding cassette, ribosome 99.31
2yl4_A595 ATP-binding cassette SUB-family B member 10, mitoc 99.29
3b6e_A216 Interferon-induced helicase C domain-containing P; 99.28
3b60_A582 Lipid A export ATP-binding/permease protein MSBA; 99.28
3qf4_A587 ABC transporter, ATP-binding protein; multidrug tr 99.28
3b5x_A582 Lipid A export ATP-binding/permease protein MSBA; 99.27
2bbs_A290 Cystic fibrosis transmembrane conductance regulato 99.27
3j16_B608 RLI1P; ribosome recycling, translation, eukarya, r 99.26
4a82_A578 Cystic fibrosis transmembrane conductance regulat; 99.26
3qf4_B598 Uncharacterized ABC transporter ATP-binding prote 99.25
1yqt_A538 RNAse L inhibitor; ATP-binding cassette, ribosome 99.21
3bk7_A607 ABC transporter ATP-binding protein; ABC ATPase, i 99.21
2vl7_A540 XPD; helicase, unknown function; 2.25A {Sulfolobus 99.19
2iw3_A986 Elongation factor 3A; acetylation, ATP-binding, pr 99.15
4f4c_A1321 Multidrug resistance protein PGP-1; ABC transporte 99.13
3ozx_A538 RNAse L inhibitor; ATP binding cassette protein, h 99.11
3ux8_A670 Excinuclease ABC, A subunit; UVRA, nucleotide exci 99.09
3j16_B608 RLI1P; ribosome recycling, translation, eukarya, r 99.06
3g5u_A 1284 MCG1178, multidrug resistance protein 1A; P-glycop 99.05
3g5u_A1284 MCG1178, multidrug resistance protein 1A; P-glycop 99.04
3ux8_A670 Excinuclease ABC, A subunit; UVRA, nucleotide exci 98.99
4f4c_A 1321 Multidrug resistance protein PGP-1; ABC transporte 98.98
1rif_A282 DAR protein, DNA helicase UVSW; bacteriophage, REC 98.96
4gp7_A171 Metallophosphoesterase; polynucleotide kinase phos 98.95
3b85_A208 Phosphate starvation-inducible protein; PHOH2, ATP 98.88
1ye8_A178 Protein THEP1, hypothetical UPF0334 kinase-like pr 98.8
2fz4_A237 DNA repair protein RAD25; RECA-like domain, DNA da 98.79
3pih_A916 Uvrabc system protein A; hydrolase, ABC ATPase, DN 98.77
2r6f_A972 Excinuclease ABC subunit A; UVRA, nucleotide excis 98.69
4aby_A415 DNA repair protein RECN; hydrolase, double strand 98.69
2iw3_A986 Elongation factor 3A; acetylation, ATP-binding, pr 98.68
2ygr_A993 Uvrabc system protein A; hydrolase, nucleotide exc 98.68
2vf7_A842 UVRA2, excinuclease ABC, subunit A.; DNA-binding p 98.65
3crv_A551 XPD/RAD3 related DNA helicase; XPD helicase DNA re 98.64
3qf7_A365 RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1. 98.55
2npi_A460 Protein CLP1; CLP1-PCF11 complex, ATP binding, ter 98.51
2pt7_A330 CAG-ALFA; ATPase, protein-protein complex, type IV 98.39
1nlf_A279 Regulatory protein REPA; replicative DNA helicase 98.38
2ehv_A251 Hypothetical protein PH0186; KAIC, RECA ATPase, un 98.37
2w0m_A235 SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus 98.37
3thx_B918 DNA mismatch repair protein MSH3; ABC family ATPas 98.34
1e69_A322 Chromosome segregation SMC protein; structural mai 98.31
3b9q_A302 Chloroplast SRP receptor homolog, alpha subunit CP 98.29
1tq4_A413 IIGP1, interferon-inducible GTPase; interferon gam 98.28
3sop_A270 Neuronal-specific septin-3; hydrolase; HET: GDP; 2 98.26
2og2_A359 Putative signal recognition particle receptor; nuc 98.22
3thx_A934 DNA mismatch repair protein MSH2; ABC family ATPas 98.18
1znw_A207 Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans 98.16
1tf7_A525 KAIC; homohexamer, hexamer, circadian clock protei 98.14
2kjq_A149 DNAA-related protein; solution structure, NESG, st 98.08
3aez_A312 Pantothenate kinase; transferase, homodimer, COA b 98.07
3jvv_A356 Twitching mobility protein; hexameric P-loop ATPas 98.05
1cr0_A296 DNA primase/helicase; RECA-type protein fold, tran 98.05
1rj9_A304 FTSY, signal recognition protein; SRP-GTPase domai 98.04
2o8b_B1022 DNA mismatch repair protein MSH6; DNA damage respo 97.98
4a74_A231 DNA repair and recombination protein RADA; hydrola 97.95
3ec2_A180 DNA replication protein DNAC; helicase loader, rep 97.94
2eyu_A261 Twitching motility protein PILT; pilus retraction 97.9
2i3b_A189 HCR-ntpase, human cancer-related ntpase; AAA, ross 97.89
1pzn_A349 RAD51, DNA repair and recombination protein RAD51, 97.87
1wb9_A800 DNA mismatch repair protein MUTS; DNA-binding, ATP 97.84
1tf7_A525 KAIC; homohexamer, hexamer, circadian clock protei 97.81
1ewq_A765 DNA mismatch repair protein MUTS; multiple domains 97.81
2cvh_A220 DNA repair and recombination protein RADB; filamen 97.78
1w36_D608 RECD, exodeoxyribonuclease V alpha chain; recombin 97.74
1f2t_B148 RAD50 ABC-ATPase; DNA double-strand break repair, 97.73
1vma_A306 Cell division protein FTSY; TM0570, structural gen 97.7
2jeo_A245 Uridine-cytidine kinase 1; UCK, transferase, ATP-b 97.67
1z6g_A218 Guanylate kinase; structural genomics, SGC, struct 97.62
3lda_A400 DNA repair protein RAD51; DNA binding protein, ATP 97.52
1n0w_A243 DNA repair protein RAD51 homolog 1; DNA repair, ho 97.5
2px0_A296 Flagellar biosynthesis protein FLHF; SRP GTPase, f 97.45
3kl4_A433 SRP54, signal recognition 54 kDa protein; signal r 97.36
2ewv_A372 Twitching motility protein PILT; pilus retraction 97.29
2dpy_A438 FLII, flagellum-specific ATP synthase; beta barrel 97.28
2dr3_A247 UPF0273 protein PH0284; RECA superfamily ATPase, h 97.21
2b8t_A223 Thymidine kinase; deoxyribonucleoside kinase, zinc 97.13
3pih_A916 Uvrabc system protein A; hydrolase, ABC ATPase, DN 97.12
3e1s_A574 Exodeoxyribonuclease V, subunit RECD; alpha and be 97.1
3kta_B173 Chromosome segregation protein SMC; structural mai 97.08
2r6f_A972 Excinuclease ABC subunit A; UVRA, nucleotide excis 97.08
1ls1_A295 Signal recognition particle protein; FFH, SRP54, S 97.08
3qkt_A339 DNA double-strand break repair RAD50 ATPase; RECA- 97.08
3e70_C328 DPA, signal recognition particle receptor; FTSY, S 97.06
3dm5_A443 SRP54, signal recognition 54 kDa protein; protein- 97.04
3szr_A608 Interferon-induced GTP-binding protein MX1; interf 97.04
2ygr_A993 Uvrabc system protein A; hydrolase, nucleotide exc 97.01
2vf7_A842 UVRA2, excinuclease ABC, subunit A.; DNA-binding p 97.0
1lw7_A365 Transcriptional regulator NADR; NMN, NMN adenylyl 96.94
2orw_A184 Thymidine kinase; TMTK, TP4A, transferase; HET: 4T 96.92
1sxj_E354 Activator 1 40 kDa subunit; clamp loader, processi 96.89
1fnn_A389 CDC6P, cell division control protein 6; ORC1, AAA 96.66
1udx_A416 The GTP-binding protein OBG; TGS domain, riken str 96.64
4ad8_A517 DNA repair protein RECN; DNA binding protein, ATPa 96.62
1htw_A158 HI0065; nucleotide-binding fold, structural genomi 96.62
3h4m_A285 Proteasome-activating nucleotidase; ATPase, PAN, A 96.59
2r6a_A454 DNAB helicase, replicative helicase; replication, 96.58
3upu_A459 ATP-dependent DNA helicase DDA; RECA-like domain, 96.58
2yhs_A503 FTSY, cell division protein FTSY; cell cycle, prot 96.57
1njg_A250 DNA polymerase III subunit gamma; rossman-like fol 96.56
3tr0_A205 Guanylate kinase, GMP kinase; purines, pyrimidines 96.49
2qnr_A301 Septin-2, protein NEDD5; structural genomics conso 96.42
2zr9_A349 Protein RECA, recombinase A; recombination, RECA m 96.37
3te6_A318 Regulatory protein SIR3; heterochromatin, gene sil 96.34
1s96_A219 Guanylate kinase, GMP kinase; E.coli, dimer, SAD, 96.33
3bos_A242 Putative DNA replication factor; P-loop containing 96.31
4a1f_A338 DNAB helicase, replicative DNA helicase; hydrolase 96.29
1xx6_A191 Thymidine kinase; NESG, northeast structural genom 96.28
1lvg_A198 Guanylate kinase, GMP kinase; transferase; HET: AD 96.24
1kgd_A180 CASK, peripheral plasma membrane CASK; maguk, guan 96.14
1zp6_A191 Hypothetical protein ATU3015; alpha-beta protein., 96.11
3cf0_A301 Transitional endoplasmic reticulum ATPase; AAA, P9 96.07
3lnc_A231 Guanylate kinase, GMP kinase; ALS collaborative cr 96.07
3hr8_A356 Protein RECA; alpha and beta proteins (A/B, A+B), 96.06
3a00_A186 Guanylate kinase, GMP kinase; domain movement, dim 96.03
3b9p_A297 CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc 96.02
3n70_A145 Transport activator; sigma-54, ntpase, PSI, MCSG, 96.01
2chg_A226 Replication factor C small subunit; DNA-binding pr 96.01
2j9r_A214 Thymidine kinase; TK1, DNK, lasso, transferase, AT 95.96
1jr3_A373 DNA polymerase III subunit gamma; processivity, pr 95.95
3c8u_A208 Fructokinase; YP_612366.1, putative fructose trans 95.92
2qen_A350 Walker-type ATPase; unknown function; HET: ADP; 2. 95.9
2zts_A251 Putative uncharacterized protein PH0186; KAIC like 95.9
2rcn_A358 Probable GTPase ENGC; YJEQ, circularly permuted, G 95.9
1zu4_A320 FTSY; GTPase, signal recognition particle, SRP, re 95.89
2v9p_A305 Replication protein E1; AAA+ molecular motor, DNA 95.84
2j41_A207 Guanylate kinase; GMP, GMK, transferase, ATP-bindi 95.82
2v1u_A387 Cell division control protein 6 homolog; DNA repli 95.81
2gza_A361 Type IV secretion system protein VIRB11; ATPase, h 95.74
2qby_A386 CDC6 homolog 1, cell division control protein 6 ho 95.69
3k1j_A604 LON protease, ATP-dependent protease LON; ATP-bind 95.69
3asz_A211 Uridine kinase; cytidine phosphorylation, transfer 95.68
3tau_A208 Guanylate kinase, GMP kinase; structural genomics, 95.57
2qz4_A262 Paraplegin; AAA+, SPG7, protease, ADP, structural 95.52
3e2i_A219 Thymidine kinase; Zn-binding, ATP-binding, DNA syn 95.49
2ce7_A476 Cell division protein FTSH; metalloprotease; HET: 95.48
2qby_B384 CDC6 homolog 3, cell division control protein 6 ho 95.45
4eun_A200 Thermoresistant glucokinase; putative sugar kinase 95.43
1p9r_A418 General secretion pathway protein E; bacterial typ 95.41
2orv_A234 Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2 95.39
3bh0_A315 DNAB-like replicative helicase; ATPase, replicatio 95.38
1w1w_A430 Structural maintenance of chromosome 1; cohesin, c 95.36
2z4s_A440 Chromosomal replication initiator protein DNAA; AA 95.28
2z43_A324 DNA repair and recombination protein RADA; archaea 95.28
1v5w_A343 DMC1, meiotic recombination protein DMC1/LIM15 hom 95.27
3ney_A197 55 kDa erythrocyte membrane protein; structural ge 95.25
2bdt_A189 BH3686; alpha-beta protein, structural genomics, P 95.24
1j8m_F297 SRP54, signal recognition 54 kDa protein; signalin 95.24
1a5t_A334 Delta prime, HOLB; zinc finger, DNA replication; 2 95.23
2ffh_A425 Protein (FFH); SRP54, signal recognition particle, 95.21
3auy_A371 DNA double-strand break repair RAD50 ATPase; DNA r 95.17
2oap_1511 GSPE-2, type II secretion system protein; hexameri 95.12
1l8q_A324 Chromosomal replication initiator protein DNAA; AA 95.04
1iqp_A327 RFCS; clamp loader, extended AAA-ATPase domain, co 95.01
2qag_C418 Septin-7; cell cycle, cell division, GTP-binding, 94.96
2zpa_A671 Uncharacterized protein YPFI; RNA modification enz 94.85
3u61_B324 DNA polymerase accessory protein 44; AAA+, ATP hyd 94.78
1w4r_A195 Thymidine kinase; type II, human, cytosolic, phosp 94.77
4a15_A 620 XPD helicase, ATP-dependent DNA helicase TA0057; h 94.77
1d2n_A272 N-ethylmaleimide-sensitive fusion protein; hexamer 94.74
3uie_A200 Adenylyl-sulfate kinase 1, chloroplastic; rossmann 94.7
1knq_A175 Gluconate kinase; ALFA/beta structure, transferase 94.7
4b4t_H467 26S protease regulatory subunit 7 homolog; hydrola 94.69
2obl_A347 ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O 94.68
3vfd_A389 Spastin; ATPase, microtubule severing, hydrolase; 94.67
2bbw_A246 Adenylate kinase 4, AK4; nucleotide kinase, nucleo 94.65
1sxj_A516 Activator 1 95 kDa subunit; clamp loader, processi 94.59
2qag_B427 Septin-6, protein NEDD5; cell cycle, cell division 94.58
2vp4_A230 Deoxynucleoside kinase; ATP-binding, DNA synthesis 94.54
3uk6_A368 RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding 94.53
1kag_A173 SKI, shikimate kinase I; transferase, structural g 94.53
2v3c_C432 SRP54, signal recognition 54 kDa protein; nucleoti 94.49
4a15_A620 XPD helicase, ATP-dependent DNA helicase TA0057; h 94.46
3kta_A182 Chromosome segregation protein SMC; structural mai 94.45
2o5v_A359 DNA replication and repair protein RECF; ABC ATPas 94.44
1sq5_A308 Pantothenate kinase; P-loop, transferase; HET: PAU 94.39
2fna_A357 Conserved hypothetical protein; structural genomic 94.37
4b4t_J405 26S protease regulatory subunit 8 homolog; hydrola 94.34
3pfi_A338 Holliday junction ATP-dependent DNA helicase RUVB; 94.33
3syl_A309 Protein CBBX; photosynthesis, rubisco activase, AA 94.33
1g5t_A196 COB(I)alamin adenosyltransferase; P-loop protein, 94.27
4b4t_I437 26S protease regulatory subunit 4 homolog; hydrola 94.24
1u94_A356 RECA protein, recombinase A; homologous recombinat 94.24
1xwi_A322 SKD1 protein; VPS4B, AAA ATPase, protein transport 94.23
3vaa_A199 Shikimate kinase, SK; structural genomics, center 94.22
2o0j_A385 Terminase, DNA packaging protein GP17; nucleotide- 94.21
2yv5_A302 YJEQ protein; hydrolase, GTPase, permutation, stru 94.1
2qp9_X355 Vacuolar protein sorting-associated protein 4; ATP 94.08
4e22_A252 Cytidylate kinase; P-loop, CMP/ATP binding, transf 94.05
1ojl_A304 Transcriptional regulatory protein ZRAR; response 94.0
3tqc_A321 Pantothenate kinase; biosynthesis of cofactors, pr 94.0
2qor_A204 Guanylate kinase; phosphotransferase, purine metab 93.93
1pui_A210 ENGB, probable GTP-binding protein ENGB; structura 93.91
2f1r_A171 Molybdopterin-guanine dinucleotide biosynthesis pr 93.89
2q6t_A444 DNAB replication FORK helicase; hydrolase; 2.90A { 93.87
2j37_W504 Signal recognition particle 54 kDa protein (SRP54) 93.85
1xp8_A366 RECA protein, recombinase A; recombination, radior 93.74
1w5s_A412 Origin recognition complex subunit 2 ORC2; replica 93.71
1rz3_A201 Hypothetical protein rbstp0775; MCSG, structural g 93.7
2qt1_A207 Nicotinamide riboside kinase 1; non-protein kinase 93.69
1hqc_A324 RUVB; extended AAA-ATPase domain, complex with nuc 93.68
2qm8_A337 GTPase/ATPase; G protein, G3E, metallochaperone, c 93.56
2x8a_A274 Nuclear valosin-containing protein-like; nuclear p 93.54
3euj_A483 Chromosome partition protein MUKB, linker; MUKB, M 93.49
1u0l_A301 Probable GTPase ENGC; permutation, OB-fold, zinc-f 93.4
1t9h_A307 YLOQ, probable GTPase ENGC; N-terminal beta-barrel 93.38
3cpe_A592 Terminase, DNA packaging protein GP17; large termi 93.29
1f2t_A149 RAD50 ABC-ATPase; DNA double-strand break repair, 93.12
2pez_A179 Bifunctional 3'-phosphoadenosine 5'- phosphosulfat 93.09
1cke_A227 CK, MSSA, protein (cytidine monophosphate kinase); 93.07
1nij_A318 Hypothetical protein YJIA; structural genomics, P- 92.99
2xxa_A433 Signal recognition particle protein; protein trans 92.76
3cr8_A552 Sulfate adenylyltranferase, adenylylsulfate kinase 92.76
2gno_A305 DNA polymerase III, gamma subunit-related protein; 92.69
1oix_A191 RAS-related protein RAB-11A; small G protein, intr 92.5
1in4_A334 RUVB, holliday junction DNA helicase RUVB; AAA+-cl 92.5
1jjv_A206 Dephospho-COA kinase; P-loop nucleotide-binding fo 92.48
1m7g_A211 Adenylylsulfate kinase; APS kinase, transferase, s 92.43
3co5_A143 Putative two-component system transcriptional RES 92.41
3cm0_A186 Adenylate kinase; ATP-binding, cytoplasm, nucleoti 92.36
1svm_A377 Large T antigen; AAA+ fold, viral protein; HET: AT 92.34
1jbk_A195 CLPB protein; beta barrel, chaperone; 1.80A {Esche 92.33
2f9l_A199 RAB11B, member RAS oncogene family; RAB11B GTPase, 92.16
1ex7_A186 Guanylate kinase; substrate-induced FIT, domain mo 92.16
2if2_A204 Dephospho-COA kinase; alpha-beta protein, structur 92.12
1qhx_A178 CPT, protein (chloramphenicol phosphotransferase); 92.11
3lw7_A179 Adenylate kinase related protein (ADKA-like); AMP, 92.1
3kb2_A173 SPBC2 prophage-derived uncharacterized protein YOR 92.1
1kht_A192 Adenylate kinase; phosphotransferase, signaling pr 92.08
3hu3_A489 Transitional endoplasmic reticulum ATPase; VCP, tr 92.05
4b3f_X646 DNA-binding protein smubp-2; hydrolase, helicase; 92.02
3nwj_A250 ATSK2; P loop, shikimate, nucleoside monophosphate 91.97
2w58_A202 DNAI, primosome component (helicase loader); ATP-b 91.94
3t61_A202 Gluconokinase; PSI-biology, structural genomics, p 91.85
2yvu_A186 Probable adenylyl-sulfate kinase; transferase, str 91.69
3bgw_A444 DNAB-like replicative helicase; ATPase, replicatio 91.67
1odf_A290 YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser 91.65
3vkw_A446 Replicase large subunit; alpha/beta domain, helica 91.65
1np6_A174 Molybdopterin-guanine dinucleotide biosynthesis pr 91.54
1w1w_A430 Structural maintenance of chromosome 1; cohesin, c 91.52
2bwj_A199 Adenylate kinase 5; phosphoryl transfer reaction, 91.45
2rhm_A193 Putative kinase; P-loop containing nucleoside trip 91.35
1ly1_A181 Polynucleotide kinase; PNK, phosphatase, transfera 91.28
2p65_A187 Hypothetical protein PF08_0063; CLPB, malaria, str 91.24
4eaq_A229 DTMP kinase, thymidylate kinase; structural genomi 91.21
2o5v_A359 DNA replication and repair protein RECF; ABC ATPas 91.17
3trf_A185 Shikimate kinase, SK; amino acid biosynthesis, tra 91.16
1sxj_C340 Activator 1 40 kDa subunit; clamp loader, processi 91.13
3iij_A180 Coilin-interacting nuclear ATPase protein; alpha a 91.13
2ze6_A253 Isopentenyl transferase; crown GALL tumor, cytokin 91.12
3qks_A203 DNA double-strand break repair RAD50 ATPase; RECA- 91.12
2c95_A196 Adenylate kinase 1; transferase, AP4A, nucleotide 91.1
2v54_A204 DTMP kinase, thymidylate kinase; nucleotide biosyn 90.99
2gj8_A172 MNME, tRNA modification GTPase TRME; G-domain dime 90.96
1y63_A184 LMAJ004144AAA protein; structural genomics, protei 90.88
2gk6_A624 Regulator of nonsense transcripts 1; UPF1, helicas 90.78
1q57_A503 DNA primase/helicase; dntpase, DNA replication, tr 90.64
3pxi_A758 Negative regulator of genetic competence CLPC/MEC; 90.59
1ixz_A254 ATP-dependent metalloprotease FTSH; AAA domain fol 90.53
1gvn_B287 Zeta; postsegregational killing system, plasmid; 1 90.43
2wji_A165 Ferrous iron transport protein B homolog; membrane 90.37
1zd8_A227 GTP:AMP phosphotransferase mitochondrial; ATP:AMP 90.36
3umf_A217 Adenylate kinase; rossmann fold, transferase; 2.05 90.28
1xjc_A169 MOBB protein homolog; structural genomics, midwest 90.27
1gtv_A214 TMK, thymidylate kinase; transferase, transferase 90.26
3qkt_A339 DNA double-strand break repair RAD50 ATPase; RECA- 90.24
2jaq_A205 Deoxyguanosine kinase; transferase, deoxyribonucle 90.19
1lv7_A257 FTSH; alpha/beta domain, four helix bundle, hydrol 90.17
3a8t_A339 Adenylate isopentenyltransferase; rossmann fold pr 90.17
3cf2_A806 TER ATPase, transitional endoplasmic reticulum ATP 90.16
1tev_A196 UMP-CMP kinase; ploop, NMP binding region, LID reg 89.95
2plr_A213 DTMP kinase, probable thymidylate kinase; TMP-bind 89.94
2wwf_A212 Thymidilate kinase, putative; transferase, malaria 89.93
3cf2_A806 TER ATPase, transitional endoplasmic reticulum ATP 89.88
2qmh_A205 HPR kinase/phosphorylase; V267F mutation, ATP-bind 89.82
2www_A349 Methylmalonic aciduria type A protein, mitochondri 89.74
1nks_A194 Adenylate kinase; thermophilic, transferase; HET: 89.68
1iy2_A278 ATP-dependent metalloprotease FTSH; AAA domain fol 89.56
1ni3_A392 YCHF GTPase, YCHF GTP-binding protein; structural 89.55
1nn5_A215 Similar to deoxythymidylate kinase (thymidylate K; 89.55
1vht_A218 Dephospho-COA kinase; structural genomics, transfe 89.5
3exa_A322 TRNA delta(2)-isopentenylpyrophosphate transferase 89.47
2zej_A184 Dardarin, leucine-rich repeat kinase 2; parkinson' 89.43
2vli_A183 Antibiotic resistance protein; transferase, tunica 89.31
2z0h_A197 DTMP kinase, thymidylate kinase; ATP-binding, nucl 89.3
1aky_A220 Adenylate kinase; ATP:AMP phosphotransferase, myok 89.15
1qhl_A227 Protein (cell division protein MUKB); SMC, chromos 89.15
2wjg_A188 FEOB, ferrous iron transport protein B homolog; me 89.13
2p5t_B253 PEZT; postsegregational killing system, phosphoryl 89.12
2wjy_A800 Regulator of nonsense transcripts 1; nonsense medi 89.0
1q3t_A236 Cytidylate kinase; nucleotide monophosphate kinase 88.92
1zuh_A168 Shikimate kinase; alpha-beta protein, transferase; 88.8
1zak_A222 Adenylate kinase; ATP:AMP-phosphotransferase, tran 88.77
3fb4_A216 Adenylate kinase; psychrophIle, phosphotransferase 88.61
3tlx_A243 Adenylate kinase 2; structural genomics, structura 88.57
2e87_A357 Hypothetical protein PH1320; GTP-binding, GTPase, 88.53
3cmu_A 2050 Protein RECA, recombinase A; homologous recombinat 88.51
4b4t_M434 26S protease regulatory subunit 6A; hydrolase, AAA 88.5
2cdn_A201 Adenylate kinase; phosphoryl transfer, associative 88.26
3cmw_A 1706 Protein RECA, recombinase A; homologous recombinat 88.25
1via_A175 Shikimate kinase; structural genomics, transferase 88.25
3foz_A316 TRNA delta(2)-isopentenylpyrophosphate transferas; 88.24
3auy_A371 DNA double-strand break repair RAD50 ATPase; DNA r 88.2
1qf9_A194 UMP/CMP kinase, protein (uridylmonophosphate/cytid 88.19
2pbr_A195 DTMP kinase, thymidylate kinase; transferase, nucl 88.13
3sr0_A206 Adenylate kinase; phosphoryl transfer analogue, AL 88.1
1ukz_A203 Uridylate kinase; transferase; HET: ADP AMP; 1.90A 87.99
3dl0_A216 Adenylate kinase; phosphotransferase, zinc coordin 87.99
1uf9_A203 TT1252 protein; P-loop, nucleotide binding domain, 87.94
2dyk_A161 GTP-binding protein; GTPase, ribosome-binding prot 87.72
3a4m_A260 L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m 87.7
2p67_A341 LAO/AO transport system kinase; ARGK, structural G 87.66
2ce2_X166 GTPase HRAS; signaling protein, guanine nucleotide 87.6
1e6c_A173 Shikimate kinase; phosphoryl transfer, ADP, shikim 87.55
1z2a_A168 RAS-related protein RAB-23; RAB GTPase, vesicular 87.55
3hws_A363 ATP-dependent CLP protease ATP-binding subunit CL; 87.51
1sxj_D353 Activator 1 41 kDa subunit; clamp loader, processi 87.51
1ofh_A310 ATP-dependent HSL protease ATP-binding subunit HSL 87.48
3d3q_A340 TRNA delta(2)-isopentenylpyrophosphate transferase 87.47
3cmw_A 1706 Protein RECA, recombinase A; homologous recombinat 87.45
2pt5_A168 Shikimate kinase, SK; aromatic amino acid biosynth 87.44
4fcw_A311 Chaperone protein CLPB; AAA domain; HET: ADP; 2.35 87.35
2xzl_A802 ATP-dependent helicase NAM7; hydrolase-RNA complex 87.33
3lxx_A239 GTPase IMAP family member 4; structural genomics c 87.23
2r44_A331 Uncharacterized protein; putative ATPase, structur 87.18
3v9p_A227 DTMP kinase, thymidylate kinase; ssgcid, STRU geno 87.17
4tmk_A213 Protein (thymidylate kinase); ATP:DTMP phosphotran 87.17
2xb4_A223 Adenylate kinase; ATP-binding, nucleotide-binding, 87.15
2bjv_A265 PSP operon transcriptional activator; AAA, transcr 87.0
2ged_A193 SR-beta, signal recognition particle receptor beta 86.95
1kao_A167 RAP2A; GTP-binding protein, small G protein, GDP, 86.91
3crm_A323 TRNA delta(2)-isopentenylpyrophosphate transferase 86.89
2qgz_A308 Helicase loader, putative primosome component; str 86.84
3be4_A217 Adenylate kinase; malaria, cryptosporidium parvum 86.77
1ky3_A182 GTP-binding protein YPT7P; vesicular traffic, GTP 86.76
2iyv_A184 Shikimate kinase, SK; transferase, aromatic amino 86.74
3r20_A233 Cytidylate kinase; structural genomics, seattle st 86.74
1e4v_A214 Adenylate kinase; transferase(phosphotransferase); 86.71
1g16_A170 RAS-related protein SEC4; G protein RAB, signaling 86.68
4edh_A213 DTMP kinase, thymidylate kinase; structural genomi 86.68
1u8z_A168 RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH 86.66
1ek0_A170 Protein (GTP-binding protein YPT51); vesicular tra 86.64
1z0j_A170 RAB-22, RAS-related protein RAB-22A; RAB GTPase, R 86.62
1c1y_A167 RAS-related protein RAP-1A; GTP-binding proteins, 86.59
3m6a_A543 ATP-dependent protease LA 1; alpha, beta, ATP-bind 86.58
2erx_A172 GTP-binding protein DI-RAS2; GTP hydrolysis, trans 86.56
3pqc_A195 Probable GTP-binding protein ENGB; rossmann fold, 86.51
1svi_A195 GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro 86.39
3lv8_A236 DTMP kinase, thymidylate kinase; structural genomi 86.38
1z08_A170 RAS-related protein RAB-21; RAB GTPase, vesicular 86.35
4b4t_K428 26S protease regulatory subunit 6B homolog; hydrol 86.33
3nbx_X500 ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structu 86.26
1wms_A177 RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p 86.24
3tmk_A216 Thymidylate kinase; phosphotransferase; HET: T5A; 86.12
2nzj_A175 GTP-binding protein REM 1; GDP/GTP binding, GTP hy 86.05
4ag6_A392 VIRB4 ATPase, type IV secretory pathway VIRB4 comp 86.01
3q85_A169 GTP-binding protein REM 2; G-domain, CAV2 beta, si 85.94
3q72_A166 GTP-binding protein RAD; G-domain, CAV2 beta, sign 85.92
1ak2_A233 Adenylate kinase isoenzyme-2; nucleoside monophosp 85.87
1r2q_A170 RAS-related protein RAB-5A; GTPase, GNP, atomic re 85.74
1ega_A301 Protein (GTP-binding protein ERA); GTPase, RNA-bin 85.67
2lkc_A178 Translation initiation factor IF-2; NMR {Geobacill 85.66
2fn4_A181 P23, RAS-related protein R-RAS; GDP/GTP binding, G 85.61
1ko7_A314 HPR kinase/phosphatase; protein kinase, phosphotra 85.58
2grj_A192 Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp 85.5
3ake_A208 Cytidylate kinase; CMP kinase, CMP complex, open c 85.46
2y8e_A179 RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti 85.46
1moz_A183 ARL1, ADP-ribosylation factor-like protein 1; GTP- 85.41
1a7j_A290 Phosphoribulokinase; transferase, calvin cycle; 2. 85.4
4b4t_L437 26S protease subunit RPT4; hydrolase, AAA-atpases, 85.37
1lkx_A 697 Myosin IE heavy chain; myosin motor domain, lever 85.32
3tw8_B181 RAS-related protein RAB-35; longin domain, RAB GTP 85.32
3k53_A271 Ferrous iron transport protein B; GTPase fold, hel 85.31
4hlc_A205 DTMP kinase, thymidylate kinase; TMK, MRSA, pipiri 85.3
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* Back     alignment and structure
Probab=100.00  E-value=7.8e-88  Score=763.18  Aligned_cols=518  Identities=67%  Similarity=1.079  Sum_probs=476.9

Q ss_pred             ccccCccCCCCCChHHHHHHHHhcCCCChHHHHHHHHHHhcCCEEEEEcCCCCchhhhhhhhhhcCccCCChhhcCceEE
Q 008221           40 NSLINRWNGKPYSQRYYEILEKRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMI  119 (573)
Q Consensus        40 ~~~~~~f~~~~l~~~~~~~l~~~~~lp~~~~q~~~i~~i~~g~~v~i~G~tGSGKTT~l~~~ll~~~~~~~~~~~~~~~i  119 (573)
                      +.+.++|+++++++++.+.++.++.+|++.+|+.++..+..|++++++|||||||||+++.+++.... ..   ..+..+
T Consensus        68 ~~~~~~f~~~~l~~~~~~~l~~r~~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTtllp~ll~~~~~-~~---~~g~~i  143 (773)
T 2xau_A           68 DGKINPFTGREFTPKYVDILKIRRELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTTQIPQFVLFDEM-PH---LENTQV  143 (773)
T ss_dssp             HSSBCTTTCSBCCHHHHHHHHHHTTSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHC-GG---GGTCEE
T ss_pred             cCCCCCccccCCCHHHHHHHHHhhcCChHHHHHHHHHHHhCCCeEEEECCCCCCHHHHHHHHHHHhcc-cc---CCCceE
Confidence            34578899999999999999999999999999999999999999999999999999999988664322 11   113446


Q ss_pred             EEecCcccccccHHHHHHHhhhhcccchhceeeeecccccccccccccCHHHHHHHHhcccccCCCcEEEEeCCCcCccc
Q 008221          120 ACTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDEAHERTLA  199 (573)
Q Consensus       120 ~~t~p~~~~~~~v~~~v~~~~~~~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDEa~~r~~~  199 (573)
                      ++++|++..+.+++++++..++..++..+|+.++++.....++.|.++|+|++++.++.+.++.++++||+||+|+|.++
T Consensus       144 lvl~P~r~La~q~~~~l~~~~~~~v~~~vG~~i~~~~~~~~~~~I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld  223 (773)
T 2xau_A          144 ACTQPRRVAAMSVAQRVAEEMDVKLGEEVGYSIRFENKTSNKTILKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLA  223 (773)
T ss_dssp             EEEESCHHHHHHHHHHHHHHTTCCBTTTEEEEETTEEECCTTCSEEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHH
T ss_pred             EecCchHHHHHHHHHHHHHHhCCchhheecceeccccccCCCCCEEEECHHHHHHHHhhCccccCCCEEEecCccccccc
Confidence            67889999889999999999988889999988877766666788999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhCCCcEEEEecccccHHHHHchhCCCCeeeecCcccCCcccccCCCchhHHHHHHHHHHHHhhcCCC
Q 008221          200 TDVLFGLLKEVLKNRPDLKLVVMSATLEAEKFQGYFYGAPLMKVPGRLHPVEIFYTQEPERDYLEAAIRTVVQIHMCEPS  279 (573)
Q Consensus       200 ~d~ll~~l~~l~~~~~~~~iil~SATl~~~~~~~~~~~~~~i~v~g~~~~v~~~y~~~~~~~~~~~~~~~l~~i~~~~~~  279 (573)
                      .+.++.+++.+...+++.++|+||||++.+.+++||.+++++.++|+.+||+++|...+..++....+..+..++....+
T Consensus       224 ~d~~~~~l~~l~~~~~~~~iIl~SAT~~~~~l~~~~~~~~vi~v~gr~~pv~~~~~~~~~~~~~~~~l~~l~~~~~~~~~  303 (773)
T 2xau_A          224 TDILMGLLKQVVKRRPDLKIIIMSATLDAEKFQRYFNDAPLLAVPGRTYPVELYYTPEFQRDYLDSAIRTVLQIHATEEA  303 (773)
T ss_dssp             HHHHHHHHHHHHHHCTTCEEEEEESCSCCHHHHHHTTSCCEEECCCCCCCEEEECCSSCCSCHHHHHHHHHHHHHHHSCS
T ss_pred             hHHHHHHHHHHHHhCCCceEEEEeccccHHHHHHHhcCCCcccccCcccceEEEEecCCchhHHHHHHHHHHHHHHhcCC
Confidence            99999999999888889999999999999999999999999999999999999999988888888888888888887788


Q ss_pred             CCEEEecCcHHHHHHHHHHHHHHHhhc--CCCCCCeEEEEecCCCCHHHHhhhcCCCC-----CCCCCCCCCCceEEEee
Q 008221          280 GDILVFLTGEEEIEDACRKITKEITNM--GDQVGPVKVVPLYSTLPPAMQQKIFEPAP-----PPSKEGGPPGRKIVVST  352 (573)
Q Consensus       280 g~iLVFl~~~~~i~~~~~~L~~~~~~~--~~~~~~~~v~~lh~~l~~~~r~~~~~~~~-----~g~~~~~~~~~kvllaT  352 (573)
                      |++|||+||+.+++.+++.|.+....+  .....++.+.++||+|++++|.++++.|+     .|.       ++|||||
T Consensus       304 g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~-------~kVlVAT  376 (773)
T 2xau_A          304 GDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPG-------RKVVIST  376 (773)
T ss_dssp             CEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCC-------EEEEEEC
T ss_pred             CCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCc-------eEEEEeC
Confidence            999999999999999999998633221  11234789999999999999999999999     777       9999999


Q ss_pred             cccccccccCCeEEEEcCCcccceeecccCCcccceeeeccHhhHHHhccccCCCCCCeEEeccchhhhhhhcCCCChhh
Q 008221          353 NIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTEKSFNNDLQPQTYPE  432 (573)
Q Consensus       353 ~iae~gitI~~V~~VId~g~~k~~~~d~~~~~~~l~~~p~s~~~~~qR~GRaGR~~~G~~~~l~t~~~~~~~~~~~~~pe  432 (573)
                      |+||+|||||+|++|||+|+.|.+.|||..+++.|.+.|+|+++|.||+|||||.++|.||+||+++++...+.++..||
T Consensus       377 ~iae~GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~~~G~~~~l~~~~~~~~~l~~~~~pE  456 (773)
T 2xau_A          377 NIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRLYTEEAFQKELIEQSYPE  456 (773)
T ss_dssp             THHHHTCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSSSSEEEEESSCHHHHHHTSCSSCCCG
T ss_pred             cHHHhCcCcCCeEEEEeCCCccceeeccccCccccccccCCHHHHHhhccccCCCCCCEEEEEecHHHhcccccccCCCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999977899999999


Q ss_pred             hhccCchhHHHHHHHcCCCccccccCCCCCcHHHHHHHHHHHHHcCCccCCCCcChhhhhhhcCCCChhhhhhhhhCCCC
Q 008221          433 ILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGALDDDGNLTEMGEKMSEFPLDPQMSKMLVESPKY  512 (573)
Q Consensus       433 i~r~~l~~~~L~~k~~~~~~~~~~~~~~pP~~~~~~~a~~~L~~lgald~~~~lT~lG~~~~~lp~~p~~~~~l~~~~~~  512 (573)
                      |++.+|.+++|+++.+|+.++..|+|++||+++++..|++.|..+||||++|+||++|+.|+.||++|++||||+.|..+
T Consensus       457 i~r~~L~~~~L~l~~~gi~~~~~f~~~~~p~~~~i~~a~~~L~~lgald~~~~lT~lG~~~a~~pl~p~~~~~l~~~~~~  536 (773)
T 2xau_A          457 ILRSNLSSTVLELKKLGIDDLVHFDFMDPPAPETMMRALEELNYLACLDDEGNLTPLGRLASQFPLDPMLAVMLIGSFEF  536 (773)
T ss_dssp             GGGSCCHHHHHHHHHTTCCCGGGCCCSSCCCHHHHHHHHHHHHHTTSBCTTSCBCHHHHHHTTSSSCHHHHHHHHHGGGG
T ss_pred             cccCcHHHHHHHHHHcCCCChhhccccCCCcHHHHHHHHHHHHHcCCcccCCCcChhhhhhccccCCHHHHHHHHhhccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHhhcCCCcccCChhhHHHHHHHHhhhCCCCChHHHHHHHHHHHHHc
Q 008221          513 NCSNEILSISAMLSVPNCFVRPREAQKAADEAKARFGHIDGDHLTLLNVYHAYKQN  568 (573)
Q Consensus       513 ~c~~~~~~i~a~l~~~~~f~~~~~~~~~~~~~~~~~~~~~sD~~~~l~~~~~~~~~  568 (573)
                      +|.+++++|||+|+++++|..|...+++++.++..|.+..|||++++|+|++|.+.
T Consensus       537 ~c~~~~l~i~a~ls~~~~f~~~~~~~~~~~~~~~~f~~~~~D~~~~l~~~~~~~~~  592 (773)
T 2xau_A          537 QCSQEILTIVAMLSVPNVFIRPTKDKKRADDAKNIFAHPDGDHITLLNVYHAFKSD  592 (773)
T ss_dssp             TCHHHHHHHHHHHTSCCCBCCCTTCHHHHHHHHHTTCCTTBHHHHHHHHHHHHTSH
T ss_pred             CchhHHHHHHHhcccCCcccCChHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999653
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus} Back     alignment and structure
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A Back     alignment and structure
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A* Back     alignment and structure
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster} Back     alignment and structure
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens} Back     alignment and structure
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A Back     alignment and structure
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens} Back     alignment and structure
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A Back     alignment and structure
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B Back     alignment and structure
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A* Back     alignment and structure
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens} Back     alignment and structure
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19 Back     alignment and structure
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A Back     alignment and structure
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A* Back     alignment and structure
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ... Back     alignment and structure
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A Back     alignment and structure
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C} Back     alignment and structure
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A* Back     alignment and structure
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii} Back     alignment and structure
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A Back     alignment and structure
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A Back     alignment and structure
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae} Back     alignment and structure
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A* Back     alignment and structure
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A Back     alignment and structure
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A* Back     alignment and structure
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A* Back     alignment and structure
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B Back     alignment and structure
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A Back     alignment and structure
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A* Back     alignment and structure
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A Back     alignment and structure
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus} Back     alignment and structure
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus} Back     alignment and structure
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A* Back     alignment and structure
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos} Back     alignment and structure
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae} Back     alignment and structure
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B Back     alignment and structure
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A Back     alignment and structure
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A Back     alignment and structure
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19 Back     alignment and structure
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos} Back     alignment and structure
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens} Back     alignment and structure
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A Back     alignment and structure
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B* Back     alignment and structure
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19 Back     alignment and structure
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A* Back     alignment and structure
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A Back     alignment and structure
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus} Back     alignment and structure
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A Back     alignment and structure
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1 Back     alignment and structure
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A* Back     alignment and structure
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4} Back     alignment and structure
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens} Back     alignment and structure
>3i4u_A ATP-dependent RNA helicase DHX8; splicing, ATP-binding, hydrolase, mRNA processing, splicing, nucleotide-binding, nucleus, phosphoprotein, SPLI; 2.10A {Homo sapiens} Back     alignment and structure
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus} Back     alignment and structure
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis} Back     alignment and structure
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens} Back     alignment and structure
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19 Back     alignment and structure
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19 Back     alignment and structure
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens} Back     alignment and structure
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens} Back     alignment and structure
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A* Back     alignment and structure
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12} Back     alignment and structure
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli} Back     alignment and structure
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B* Back     alignment and structure
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A* Back     alignment and structure
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A Back     alignment and structure
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens} Back     alignment and structure
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A Back     alignment and structure
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B* Back     alignment and structure
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19 Back     alignment and structure
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A* Back     alignment and structure
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens} Back     alignment and structure
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A Back     alignment and structure
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19 Back     alignment and structure
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A* Back     alignment and structure
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens} Back     alignment and structure
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19 Back     alignment and structure
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens} Back     alignment and structure
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens} Back     alignment and structure
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A Back     alignment and structure
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens} Back     alignment and structure
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19 Back     alignment and structure
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19 Back     alignment and structure
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Back     alignment and structure
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Back     alignment and structure
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Back     alignment and structure
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A Back     alignment and structure
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Back     alignment and structure
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae} Back     alignment and structure
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Back     alignment and structure
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Back     alignment and structure
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis} Back     alignment and structure
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Back     alignment and structure
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Back     alignment and structure
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* Back     alignment and structure
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Back     alignment and structure
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} Back     alignment and structure
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Back     alignment and structure
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} Back     alignment and structure
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Back     alignment and structure
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Back     alignment and structure
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 Back     alignment and structure
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* Back     alignment and structure
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A Back     alignment and structure
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Back     alignment and structure
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Back     alignment and structure
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Back     alignment and structure
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Back     alignment and structure
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Back     alignment and structure
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Back     alignment and structure
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Back     alignment and structure
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* Back     alignment and structure
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Back     alignment and structure
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Back     alignment and structure
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus} Back     alignment and structure
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A Back     alignment and structure
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Back     alignment and structure
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 Back     alignment and structure
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Back     alignment and structure
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Back     alignment and structure
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} Back     alignment and structure
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Back     alignment and structure
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Back     alignment and structure
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Back     alignment and structure
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Back     alignment and structure
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens} Back     alignment and structure
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Back     alignment and structure
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Back     alignment and structure
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Back     alignment and structure
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Back     alignment and structure
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} Back     alignment and structure
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Back     alignment and structure
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Back     alignment and structure
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Back     alignment and structure
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Back     alignment and structure
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii} Back     alignment and structure
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Back     alignment and structure
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} Back     alignment and structure
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Back     alignment and structure
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus} Back     alignment and structure
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} Back     alignment and structure
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Back     alignment and structure
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Back     alignment and structure
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus} Back     alignment and structure
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} Back     alignment and structure
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23 Back     alignment and structure
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A* Back     alignment and structure
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032} Back     alignment and structure
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11 Back     alignment and structure
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19 Back     alignment and structure
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima} Back     alignment and structure
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A Back     alignment and structure
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans} Back     alignment and structure
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Back     alignment and structure
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A* Back     alignment and structure
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1* Back     alignment and structure
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A* Back     alignment and structure
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae} Back     alignment and structure
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A Back     alignment and structure
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A Back     alignment and structure
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2} Back     alignment and structure
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B* Back     alignment and structure
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12 Back     alignment and structure
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana} Back     alignment and structure
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* Back     alignment and structure
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens} Back     alignment and structure
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana} Back     alignment and structure
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A* Back     alignment and structure
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A Back     alignment and structure
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* Back     alignment and structure
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} Back     alignment and structure
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A* Back     alignment and structure
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A* Back     alignment and structure
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A* Back     alignment and structure
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D* Back     alignment and structure
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B* Back     alignment and structure
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A* Back     alignment and structure
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* Back     alignment and structure
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus} Back     alignment and structure
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11 Back     alignment and structure
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11 Back     alignment and structure
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A* Back     alignment and structure
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* Back     alignment and structure
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A* Back     alignment and structure
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A* Back     alignment and structure
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D* Back     alignment and structure
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* Back     alignment and structure
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10 Back     alignment and structure
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A* Back     alignment and structure
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum} Back     alignment and structure
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A* Back     alignment and structure
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11 Back     alignment and structure
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A* Back     alignment and structure
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A Back     alignment and structure
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A* Back     alignment and structure
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium} Back     alignment and structure
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii} Back     alignment and structure
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A* Back     alignment and structure
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima} Back     alignment and structure
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A* Back     alignment and structure
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B* Back     alignment and structure
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A Back     alignment and structure
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A* Back     alignment and structure
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B Back     alignment and structure
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B* Back     alignment and structure
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus} Back     alignment and structure
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B Back     alignment and structure
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A* Back     alignment and structure
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1 Back     alignment and structure
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A* Back     alignment and structure
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Back     alignment and structure
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 Back     alignment and structure
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1 Back     alignment and structure
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans} Back     alignment and structure
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A Back     alignment and structure
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} Back     alignment and structure
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A Back     alignment and structure
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4} Back     alignment and structure
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A Back     alignment and structure
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A* Back     alignment and structure
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii} Back     alignment and structure
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A* Back     alignment and structure
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ... Back     alignment and structure
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae} Back     alignment and structure
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A* Back     alignment and structure
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A Back     alignment and structure
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori} Back     alignment and structure
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14 Back     alignment and structure
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1 Back     alignment and structure
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1 Back     alignment and structure
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 Back     alignment and structure
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} Back     alignment and structure
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum} Back     alignment and structure
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima} Back     alignment and structure
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} Back     alignment and structure
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli} Back     alignment and structure
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus} Back     alignment and structure
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A* Back     alignment and structure
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B* Back     alignment and structure
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP} Back     alignment and structure
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi} Back     alignment and structure
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii} Back     alignment and structure
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V Back     alignment and structure
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A Back     alignment and structure
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A* Back     alignment and structure
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus} Back     alignment and structure
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix} Back     alignment and structure
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis} Back     alignment and structure
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} Back     alignment and structure
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus} Back     alignment and structure
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A* Back     alignment and structure
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes} Back     alignment and structure
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens} Back     alignment and structure
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus} Back     alignment and structure
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E* Back     alignment and structure
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} Back     alignment and structure
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP} Back     alignment and structure
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A* Back     alignment and structure
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14 Back     alignment and structure
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1} Back     alignment and structure
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12 Back     alignment and structure
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A* Back     alignment and structure
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A* Back     alignment and structure
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A Back     alignment and structure
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0 Back     alignment and structure
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25 Back     alignment and structure
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F Back     alignment and structure
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E* Back     alignment and structure
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A Back     alignment and structure
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* Back     alignment and structure
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1 Back     alignment and structure
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A* Back     alignment and structure
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20 Back     alignment and structure
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} Back     alignment and structure
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12} Back     alignment and structure
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B* Back     alignment and structure
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A* Back     alignment and structure
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A* Back     alignment and structure
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A* Back     alignment and structure
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A* Back     alignment and structure
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A* Back     alignment and structure
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A* Back     alignment and structure
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens} Back     alignment and structure
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A Back     alignment and structure
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Back     alignment and structure
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} Back     alignment and structure
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A* Back     alignment and structure
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D* Back     alignment and structure
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2 Back     alignment and structure
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B Back     alignment and structure
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A* Back     alignment and structure
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X* Back     alignment and structure
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans} Back     alignment and structure
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A* Back     alignment and structure
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20 Back     alignment and structure
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp} Back     alignment and structure
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A* Back     alignment and structure
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A* Back     alignment and structure
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A Back     alignment and structure
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens} Back     alignment and structure
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron} Back     alignment and structure
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A* Back     alignment and structure
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} Back     alignment and structure
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A* Back     alignment and structure
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis} Back     alignment and structure
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium} Back     alignment and structure
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii} Back     alignment and structure
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax} Back     alignment and structure
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8 Back     alignment and structure
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus} Back     alignment and structure
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus} Back     alignment and structure
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A Back     alignment and structure
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1 Back     alignment and structure
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A* Back     alignment and structure
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6 Back     alignment and structure
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A* Back     alignment and structure
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C* Back     alignment and structure
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A* Back     alignment and structure
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} Back     alignment and structure
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A* Back     alignment and structure
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 Back     alignment and structure
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 Back     alignment and structure
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A* Back     alignment and structure
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A* Back     alignment and structure
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A* Back     alignment and structure
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A* Back     alignment and structure
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1 Back     alignment and structure
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9 Back     alignment and structure
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans} Back     alignment and structure
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20 Back     alignment and structure
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* Back     alignment and structure
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A* Back     alignment and structure
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1 Back     alignment and structure
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A* Back     alignment and structure
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae} Back     alignment and structure
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus} Back     alignment and structure
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A Back     alignment and structure
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20 Back     alignment and structure
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* Back     alignment and structure
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A Back     alignment and structure
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus} Back     alignment and structure
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A* Back     alignment and structure
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A Back     alignment and structure
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A* Back     alignment and structure
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A Back     alignment and structure
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A* Back     alignment and structure
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A Back     alignment and structure
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana} Back     alignment and structure
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426} Back     alignment and structure
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti} Back     alignment and structure
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix} Back     alignment and structure
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1} Back     alignment and structure
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6 Back     alignment and structure
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus} Back     alignment and structure
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A Back     alignment and structure
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12 Back     alignment and structure
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens} Back     alignment and structure
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus} Back     alignment and structure
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 Back     alignment and structure
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum} Back     alignment and structure
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A Back     alignment and structure
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans} Back     alignment and structure
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii} Back     alignment and structure
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Back     alignment and structure
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A Back     alignment and structure
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A Back     alignment and structure
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A* Back     alignment and structure
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A Back     alignment and structure
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A* Back     alignment and structure
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A Back     alignment and structure
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1 Back     alignment and structure
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A Back     alignment and structure
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2 Back     alignment and structure
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis} Back     alignment and structure
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* Back     alignment and structure
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B* Back     alignment and structure
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A* Back     alignment and structure
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A* Back     alignment and structure
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni} Back     alignment and structure
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10 Back     alignment and structure
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A* Back     alignment and structure
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B Back     alignment and structure
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A* Back     alignment and structure
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20 Back     alignment and structure
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus} Back     alignment and structure
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A* Back     alignment and structure
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1 Back     alignment and structure
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii} Back     alignment and structure
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A* Back     alignment and structure
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A* Back     alignment and structure
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A* Back     alignment and structure
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens} Back     alignment and structure
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1 Back     alignment and structure
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20 Back     alignment and structure
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2 Back     alignment and structure
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A* Back     alignment and structure
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A Back     alignment and structure
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A Back     alignment and structure
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* Back     alignment and structure
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans} Back     alignment and structure
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A* Back     alignment and structure
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12 Back     alignment and structure
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii} Back     alignment and structure
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae} Back     alignment and structure
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A Back     alignment and structure
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1 Back     alignment and structure
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A* Back     alignment and structure
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1 Back     alignment and structure
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus} Back     alignment and structure
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum} Back     alignment and structure
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} Back     alignment and structure
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli} Back     alignment and structure
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A Back     alignment and structure
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A* Back     alignment and structure
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2 Back     alignment and structure
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A Back     alignment and structure
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* Back     alignment and structure
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A* Back     alignment and structure
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus} Back     alignment and structure
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A* Back     alignment and structure
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A* Back     alignment and structure
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A* Back     alignment and structure
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1 Back     alignment and structure
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus} Back     alignment and structure
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A* Back     alignment and structure
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10 Back     alignment and structure
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... Back     alignment and structure
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A* Back     alignment and structure
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* Back     alignment and structure
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A Back     alignment and structure
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Back     alignment and structure
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A* Back     alignment and structure
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228} Back     alignment and structure
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A* Back     alignment and structure
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus} Back     alignment and structure
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A* Back     alignment and structure
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae} Back     alignment and structure
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens} Back     alignment and structure
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406} Back     alignment and structure
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis} Back     alignment and structure
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A* Back     alignment and structure
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A* Back     alignment and structure
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A* Back     alignment and structure
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} Back     alignment and structure
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* Back     alignment and structure
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A Back     alignment and structure
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3} Back     alignment and structure
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II} Back     alignment and structure
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* Back     alignment and structure
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A* Back     alignment and structure
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A* Back     alignment and structure
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A* Back     alignment and structure
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A Back     alignment and structure
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A* Back     alignment and structure
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* Back     alignment and structure
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Back     alignment and structure
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* Back     alignment and structure
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* Back     alignment and structure
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A Back     alignment and structure
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 Back     alignment and structure
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A Back     alignment and structure
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A* Back     alignment and structure
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A* Back     alignment and structure
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* Back     alignment and structure
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli} Back     alignment and structure
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* Back     alignment and structure
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A* Back     alignment and structure
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} Back     alignment and structure
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A Back     alignment and structure
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A* Back     alignment and structure
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* Back     alignment and structure
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A* Back     alignment and structure
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* Back     alignment and structure
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X Back     alignment and structure
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A* Back     alignment and structure
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* Back     alignment and structure
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2 Back     alignment and structure
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima} Back     alignment and structure
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A* Back     alignment and structure
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* Back     alignment and structure
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Back     alignment and structure
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6 Back     alignment and structure
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter domain, contractIle protein; HET: ADP; 3.00A {Dictyostelium discoideum} SCOP: c.37.1.9 Back     alignment and structure
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} Back     alignment and structure
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus} Back     alignment and structure
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 573
d1yksa2299 c.37.1.14 (A:325-623) YFV helicase domain {Yellow 7e-58
d2bmfa2305 c.37.1.14 (A:178-482) Dengue virus helicase {Dengu 3e-50
d1a1va1136 c.37.1.14 (A:190-325) HCV helicase domain {Human h 1e-29
d1yksa1140 c.37.1.14 (A:185-324) YFV helicase domain {Yellow 8e-16
d1gkub1237 c.37.1.16 (B:1-250) Helicase-like "domain" of reve 5e-05
d1sgwa_200 c.37.1.12 (A:) Putative ABC transporter PF0895 {Py 3e-04
d3adka_194 c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [ 6e-04
d2pmka1241 c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro 0.001
d2fz4a1206 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Arc 0.003
d1wp9a2286 c.37.1.19 (A:201-486) putative ATP-dependent RNA h 0.004
>d1yksa2 c.37.1.14 (A:325-623) YFV helicase domain {Yellow fever virus [TaxId: 11089]} Length = 299 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: YFV helicase domain
species: Yellow fever virus [TaxId: 11089]

 Score =  193 bits (492), Expect = 7e-58
 Identities = 46/327 (14%), Positives = 81/327 (24%), Gaps = 61/327 (18%)

Query: 243 VPGRLHPVEIFYTQEPERDYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKE 302
            P     +E   T  P   +            +         FL            + K 
Sbjct: 6   FPHSNGEIEDVQTDIPSEPWNTGHDW------ILADKRPTAWFLPSIRAANVMAASLRKA 59

Query: 303 ITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTID 362
                       VV L           I +                +++T+IAE    + 
Sbjct: 60  GK---------SVVVLNRKTFEREYPTIKQK-----------KPDFILATDIAEMGANLC 99

Query: 363 GIVYVIDPGFA-KQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTEKSF 421
            +  V+D   A K  + +   +V       IS +SA QR GR GR  P +    Y    +
Sbjct: 100 -VERVLDCRTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRN-PNRDGDSYY---Y 154

Query: 422 NNDLQPQTYPEILRSN----LANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYL 477
           +          +        L N  +    +     V          E  +R  +   + 
Sbjct: 155 SEPTSENNAHHVCWLEASMLLDNMEVRGGMVAPLYGVEGTKTPVSPGEMRLRDDQRKVFR 214

Query: 478 GALDDDGNLTEMGEKMSEFPLDPQMSKMLVESPKYNCSNEILSISAMLSVPNCFVRPREA 537
             + +      +  ++++  L     K                         CF  P E 
Sbjct: 215 ELVRNCDLPVWLSWQVAKAGLKTNDRKW------------------------CFEGPEEH 250

Query: 538 QKAADEA-KARFGHIDGDHLTLLNVYH 563
           +   D     +     G    L   + 
Sbjct: 251 EILNDSGETVKCRAPGGAKKPLRPRWC 277
>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} Length = 305 Back     information, alignment and structure
>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Length = 136 Back     information, alignment and structure
>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} Length = 140 Back     information, alignment and structure
>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 237 Back     information, alignment and structure
>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 Back     information, alignment and structure
>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} Length = 194 Back     information, alignment and structure
>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 Back     information, alignment and structure
>d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} Length = 206 Back     information, alignment and structure
>d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Length = 286 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query573
d2bmfa2305 Dengue virus helicase {Dengue virus type 2 [TaxId: 99.97
d1yksa2299 YFV helicase domain {Yellow fever virus [TaxId: 11 99.95
d1fuka_162 Initiation factor 4a {Baker's yeast (Saccharomyces 99.9
d2j0sa2168 Probable ATP-dependent RNA helicase DDX48 {Human ( 99.9
d1s2ma2171 Putative ATP-dependent RNA helicase DHH1 {Baker's 99.9
d2rb4a1168 ATP-dependent RNA helicase DDX25 {Human (Homo sapi 99.89
d1hv8a2155 Putative DEAD box RNA helicase {Archaeon Methanoco 99.89
d2j0sa1222 Probable ATP-dependent RNA helicase DDX48 {Human ( 99.88
d1t5ia_168 Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo 99.87
d1oywa3200 RecQ helicase domain {Escherichia coli [TaxId: 562 99.87
d2g9na1218 Initiation factor 4a {Human (Homo sapiens) [TaxId: 99.86
d1veca_206 DEAD box RNA helicase rck/p54 {Human (Homo sapiens 99.85
d1qdea_212 Initiation factor 4a {Baker's yeast (Saccharomyces 99.85
d1t5la2181 Nucleotide excision repair enzyme UvrB {Bacillus c 99.85
d1t6na_207 Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo 99.84
d1c4oa2174 Nucleotide excision repair enzyme UvrB {Thermus th 99.84
d1s2ma1206 Putative ATP-dependent RNA helicase DHH1 {Baker's 99.83
d1jr6a_138 HCV helicase domain {Human hepatitis C virus (HCV) 99.82
d1wrba1238 putative ATP-dependent RNA helicase VlgB {Flatworm 99.8
d1hv8a1208 Putative DEAD box RNA helicase {Archaeon Methanoco 99.8
d1q0ua_209 Probable DEAD box RNA helicase YqfR {Bacillus stea 99.79
d1wp9a2286 putative ATP-dependent RNA helicase PF2015 {Pyroco 99.74
d1v43a3239 Hypothetical protein PH0022, N-terminal domain {Py 99.73
d1oxxk2242 Glucose transport protein GlcV, N-terminal domain 99.72
d3d31a2229 Sulfate/molybdate ABC transporter, ATP-binding pro 99.72
d2awna2232 Maltose transport protein MalK, N-terminal domain 99.72
d1l2ta_230 MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 99.71
d1g2912240 Maltose transport protein MalK, N-terminal domain 99.71
d3dhwc1240 Methionine import ATP-binding protein MetN {Escher 99.7
d1a1va2299 HCV helicase domain {Human hepatitis C virus (HCV) 99.69
d2onka1240 Molybdate/tungstate import ATP-binding protein Wtp 99.68
d1vpla_238 Putative ABC transporter TM0544 {Thermotoga mariti 99.64
d2p6ra4201 Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 99.64
d1ji0a_240 Branched chain aminoacid ABC transporter {Thermoto 99.63
d1g6ha_254 MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 99.63
d1b0ua_258 ATP-binding subunit of the histidine permease {Sal 99.61
d2p6ra3202 Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 99.58
d1gm5a4206 RecG helicase domain {Thermotoga maritima [TaxId: 99.57
d1jj7a_251 Peptide transporter Tap1, C-terminal ABC domain {H 99.54
d1mv5a_242 Multidrug resistance ABC transporter LmrA, C-termi 99.54
d2pmka1241 Haemolysin B ATP-binding protein {Escherichia coli 99.53
d2hyda1255 Putative multidrug export ATP-binding/permease pro 99.49
d1l7vc_231 ABC transporter involved in vitamin B12 uptake, Bt 99.48
d1gkub2248 Helicase-like "domain" of reverse gyrase {Archaeon 99.47
d2eyqa5211 Transcription-repair coupling factor, TRCF {Escher 99.47
d1sgwa_200 Putative ABC transporter PF0895 {Pyrococcus furios 99.47
d3b60a1253 Multidrug resistance ABC transporter MsbA, C-termi 99.46
d1oywa2206 RecQ helicase domain {Escherichia coli [TaxId: 562 99.43
d2fwra1200 DNA repair protein RAD25 {Archaeoglobus fulgidus [ 99.41
d1gkub1237 Helicase-like "domain" of reverse gyrase {Archaeon 99.35
d1r0wa_281 Cystic fibrosis transmembrane conductance regulato 99.31
d1a1va1136 HCV helicase domain {Human hepatitis C virus (HCV) 99.28
d1yksa1140 YFV helicase domain {Yellow fever virus [TaxId: 11 99.28
d1wp9a1200 putative ATP-dependent RNA helicase PF2015 {Pyroco 99.13
d1tf5a4175 Translocation ATPase SecA, nucleotide-binding doma 98.81
d1z3ix1346 Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxI 98.69
d2fz4a1206 DNA repair protein RAD25 {Archaeoglobus fulgidus [ 98.66
d1z5za1244 Helicase of the SNF2/Rad54 hamily {Sulfolobus solf 98.62
d1ye8a1178 Hypothetical kinase-like protein Aq_1292 {Aquifex 98.53
d1rifa_282 DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665] 98.13
d1gm5a3264 RecG helicase domain {Thermotoga maritima [TaxId: 98.0
d2eyqa3233 Transcription-repair coupling factor, TRCF {Escher 97.98
d1okkd2207 GTPase domain of the signal recognition particle r 97.94
d1vmaa2213 GTPase domain of the signal recognition particle r 97.83
d2qy9a2211 GTPase domain of the signal recognition particle r 97.82
d1ls1a2207 GTPase domain of the signal sequence recognition p 97.8
d1w36d1359 Exodeoxyribonuclease V alpha chain (RecD) {Escheri 97.65
d1nkta4219 Translocation ATPase SecA, nucleotide-binding doma 97.64
d1j8yf2211 GTPase domain of the signal sequence recognition p 97.42
g1f2t.1292 Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} 96.76
d1a5ta2207 delta prime subunit of DNA polymerase III, N-domai 96.54
d1tf7a2242 Circadian clock protein KaiC {Synechococcus sp. st 96.5
d1sxjc2227 Replication factor C3 {Baker's yeast (Saccharomyce 96.41
d1ewqa2224 DNA repair protein MutS, the C-terminal domain {Th 96.22
d1wb9a2234 DNA repair protein MutS, the C-terminal domain {Es 96.16
d1njfa_239 delta prime subunit of DNA polymerase III, N-domai 96.13
d1nlfa_274 Hexameric replicative helicase repA {Escherichia c 95.89
d1iqpa2231 Replication factor C {Archaeon Pyrococcus furiosus 95.83
d1sxje2252 Replication factor C5 {Baker's yeast (Saccharomyce 95.8
d1sxjb2224 Replication factor C4 {Baker's yeast (Saccharomyce 95.68
d1ixza_247 AAA domain of cell division protein FtsH {Thermus 95.33
g1ii8.1369 Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} 95.17
d1tf7a1242 Circadian clock protein KaiC {Synechococcus sp. st 95.1
d1d2na_246 Hexamerization domain of N-ethylmalemide-sensitive 95.09
d1cr2a_277 Gene 4 protein (g4p, DNA primase), helicase domain 95.08
d1ly1a_152 Polynucleotide kinase, kinase domain {Bacteriophag 94.99
d1np6a_170 Molybdopterin-guanine dinucleotide biosynthesis pr 94.93
d1znwa1182 Guanylate kinase {Mycobacterium tuberculosis [TaxI 94.87
d2i3ba1189 Cancer-related NTPase, C1orf57 {Human (Homo sapien 94.84
d2b8ta1139 Thymidine kinase, TK1, N-terminal domain {Ureaplas 94.77
d1g6oa_323 Hexameric traffic ATPase, HP0525 {Helicobacter pyl 94.77
d1zp6a1176 Hypothetical protein Atu3015 {Agrobacterium tumefa 94.73
d1knqa_171 Gluconate kinase {Escherichia coli [TaxId: 562]} 94.53
d1khta_190 Adenylate kinase {Archaeon Methanococcus voltae [T 94.5
d1lw7a2192 Transcriptional regulator NadR, ribosylnicotinamid 94.25
d2gnoa2198 gamma subunit of DNA polymerase III, N-domain {The 94.21
d1xjca_165 Molybdopterin-guanine dinucleotide biosynthesis pr 94.13
d1s96a_205 Guanylate kinase {Escherichia coli [TaxId: 562]} 94.1
d1p9ra_401 Extracellular secretion NTPase EpsE {Vibrio choler 94.08
d3adka_194 Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} 93.96
d1z3ix2298 Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxI 93.94
d1qhxa_178 Chloramphenicol phosphotransferase {Streptomyces v 93.87
d1l8qa2213 Chromosomal replication initiation factor DnaA {Aq 93.82
d1fnna2276 CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T 93.78
d2bdta1176 Hypothetical protein BH3686 {Bacillus halodurans [ 93.75
d1szpa2251 DNA repair protein Rad51, catalytic domain {Baker' 93.71
d1kaga_169 Shikimate kinase (AroK) {Escherichia coli [TaxId: 93.52
d2fnaa2283 Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ 93.33
d1m8pa3183 ATP sulfurylase C-terminal domain {Fungus (Penicil 93.22
d1n0wa_242 DNA repair protein Rad51, catalytic domain {Human 93.18
d1w1wa_427 Smc head domain {Baker's yeast (Saccharomyces cere 93.01
d1rz3a_198 Hypothetical protein rbstp0775 {Bacillus stearothe 92.99
d1y63a_174 Probable kinase LmjF30.1890 {Leishmania major [Tax 92.98
d1z63a1230 Helicase of the SNF2/Rad54 hamily {Sulfolobus solf 92.98
d1rkba_173 Adenylate kinase {Human (Homo sapiens), isoenzyme 92.94
d1yj5a2172 5' polynucleotide kinase-3' phosphatase, C-termina 92.78
d2a5yb3277 CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI 92.73
d1xx6a1141 Thymidine kinase, TK1, N-terminal domain {Clostrid 92.71
d1pzna2254 DNA repair protein Rad51, catalytic domain {Archae 92.69
d1kgda_178 Guanylate kinase-like domain of Cask {Human (Homo 92.43
d1xbta1133 Thymidine kinase, TK1, N-terminal domain {Human (H 92.36
d1yrba1244 ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss 92.23
d1gkya_186 Guanylate kinase {Baker's yeast (Saccharomyces cer 92.09
d1qf9a_194 UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 92.03
d1nksa_194 Adenylate kinase {Archaeon Sulfolobus acidocaldari 91.98
d1uaaa1306 DEXX box DNA helicase {Escherichia coli, RepD [Tax 91.93
d1ukza_196 Uridylate kinase {Baker's yeast (Saccharomyces cer 91.91
d1uj2a_213 Uridine-cytidine kinase 2 {Human (Homo sapiens) [T 91.91
d1teva_194 UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] 91.78
d1u0la2225 Probable GTPase EngC (YjeQ), C-terminal domain {Th 91.76
d1x6va3195 Adenosine-5'phosphosulfate kinase (APS kinase) {Hu 91.72
d1v5wa_258 Meiotic recombination protein DMC1/LIM15 homolog { 91.65
g1f2t.1292 Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} 91.64
d1zina1182 Adenylate kinase {Bacillus stearothermophilus [Tax 91.44
d1sxjd2237 Replication factor C2 {Baker's yeast (Saccharomyce 91.42
d1zaka1189 Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} 91.33
d1lvga_190 Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 91.26
d1e4va1179 Adenylate kinase {Escherichia coli [TaxId: 562]} 91.12
d1pjra1318 DEXX box DNA helicase {Bacillus stearothermophilus 91.1
d1s3ga1182 Adenylate kinase {Bacillus globisporus [TaxId: 145 91.09
d1ak2a1190 Adenylate kinase {Cow (Bos taurus), mitochondrial 91.05
g1xew.1329 Smc head domain {Pyrococcus furiosus [TaxId: 2261] 90.81
d4tmka_210 Thymidylate kinase {Escherichia coli [TaxId: 562]} 90.76
d2p6ra185 Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 90.51
d1ofha_309 HslU {Haemophilus influenzae [TaxId: 727]} 90.36
d2cdna1181 Adenylate kinase {Mycobacterium tuberculosis [TaxI 90.33
d1viaa_161 Shikimate kinase (AroK) {Campylobacter jejuni [Tax 90.32
g1ii8.1369 Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} 90.15
d1e6ca_170 Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax 90.15
d1ckea_225 CMP kinase {Escherichia coli [TaxId: 562]} 90.12
d1gvnb_273 Plasmid maintenance system epsilon/zeta, toxin zet 90.09
d1e69a_308 Smc head domain {Thermotoga maritima [TaxId: 2336] 90.07
d1akya1180 Adenylate kinase {Baker's yeast (Saccharomyces cer 90.05
d1ixsb2239 Holliday junction helicase RuvB {Thermus thermophi 89.93
d1bifa1213 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata 89.9
d1r8sa_160 ADP-ribosylation factor {Human (Homo sapiens), ARF 89.89
d1nn5a_209 Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 89.82
d2i1qa2258 DNA repair protein Rad51, catalytic domain {Archae 89.78
d1qhla_222 Cell division protein MukB {Escherichia coli [TaxI 89.69
d1mkya1171 Probable GTPase Der, N-terminal and middle domains 89.6
d1w1wa_427 Smc head domain {Baker's yeast (Saccharomyces cere 89.56
d2ak3a1189 Adenylate kinase {Cow (Bos taurus), mitochondrial 89.51
d2vp4a1197 Deoxyribonucleoside kinase {Fruit fly (Drosophila 89.47
d1upta_169 ADP-ribosylation factor {Human (Homo sapiens), ARL 89.31
d1in4a2238 Holliday junction helicase RuvB {Thermotoga mariti 89.27
d1f6ba_186 SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 88.7
d1sxja2253 Replication factor C1 {Baker's yeast (Saccharomyce 88.49
d1svia_195 Probable GTPase EngB {Bacillus subtilis [TaxId: 14 88.42
d1q3ta_223 CMP kinase {Streptococcus pneumoniae [TaxId: 1313] 88.38
d1htwa_158 Hypothetical protein HI0065 {Haemophilus influenza 88.35
d1tmka_214 Thymidylate kinase {Baker's yeast (Saccharomyces c 88.26
d2iyva1165 Shikimate kinase (AroK) {Mycobacterium tuberculosi 88.22
d1nrjb_209 Signal recognition particle receptor beta-subunit 88.09
d1g41a_443 HslU {Haemophilus influenzae [TaxId: 727]} 87.99
d2fh5b1207 Signal recognition particle receptor beta-subunit 87.94
d2eyqa3233 Transcription-repair coupling factor, TRCF {Escher 87.9
d2cxxa1184 GTP-binding protein engB {Pyrococcus horikoshii [T 87.88
d2qtvb1166 SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta 87.83
d2gj8a1161 Probable tRNA modification GTPase TrmE (MnmE), G d 87.83
d1uf9a_191 Dephospho-CoA kinase {Thermus thermophilus [TaxId: 87.33
d1ksha_165 ADP-ribosylation factor {Mouse (Mus musculus), ARL 87.28
d1m7ga_208 Adenosine-5'phosphosulfate kinase (APS kinase) {Fu 87.25
d1p5zb_241 Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 87.24
d1w5sa2287 CDC6-like protein APE0152, N-terminal domain {Aero 86.97
d3raba_169 Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} 86.9
d1z2aa1164 Rab23 {Mouse (Mus musculus) [TaxId: 10090]} 86.9
d1wf3a1178 GTPase Era, N-terminal domain {Thermus thermophilu 86.88
d1wmsa_174 Rab9a {Human (Homo sapiens) [TaxId: 9606]} 86.86
d1zj6a1177 ADP-ribosylation factor {Human (Homo sapiens), ARL 86.7
d1jjva_205 Dephospho-CoA kinase {Haemophilus influenzae [TaxI 86.55
d1odfa_286 Hypothetical protein Ygr205W {Baker's yeast (Sacch 86.47
d2erxa1171 di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} 86.31
d1w7ja2 730 Myosin S1, motor domain {Chicken (Gallus gallus), 86.3
d1t9ha2231 Probable GTPase EngC (YjeQ), C-terminal domain {Ba 86.26
d2p67a1327 LAO/AO transport system kinase ArgK {Escherichia c 86.1
d2erya1171 r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} 85.91
d1egaa1179 GTPase Era, N-terminal domain {Escherichia coli [T 85.9
d1br2a2 710 Myosin S1, motor domain {Chicken (Gallus gallus), 85.83
d1h65a_257 Chloroplast protein translocon GTPase Toc34 {Garde 85.83
d1ky3a_175 Rab-related protein ypt7p {Baker's yeast (Saccharo 85.77
d2f9la1175 Rab11b {Human (Homo sapiens) [TaxId: 9606]} 85.77
d1vhta_208 Dephospho-CoA kinase {Escherichia coli [TaxId: 562 85.7
d1z06a1165 Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} 85.7
d1mkya2186 Probable GTPase Der, N-terminal and middle domains 85.6
d1kaoa_167 Rap2a {Human (Homo sapiens) [TaxId: 9606]} 85.5
d2a5ja1173 Rab2b {Human (Homo sapiens) [TaxId: 9606]} 85.48
d1d0xa2712 Myosin S1, motor domain {Dictyostelium discoideum 85.38
d1nkta3288 Translocation ATPase SecA, nucleotide-binding doma 85.32
d1a7ja_288 Phosphoribulokinase {Rhodobacter sphaeroides [TaxI 85.2
d1lnza2185 Obg GTP-binding protein middle domain {Bacillus su 85.17
d2atva1168 Ras-like estrogen-regulated growth inhibitor, RERG 85.14
d1ctqa_166 cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 85.0
d1lkxa_ 684 Myosin S1, motor domain {Dictyostelium discoideum, 84.99
d1zd9a1164 ADP-ribosylation factor {Human (Homo sapiens), ARL 84.98
d2fn4a1173 r-Ras {Human (Homo sapiens) [TaxId: 9606]} 84.98
d2f7sa1186 Rab27b {Human (Homo sapiens) [TaxId: 9606]} 84.86
d1g16a_166 Rab-related protein Sec4 {Baker's yeast (Saccharom 84.86
d1kmqa_177 RhoA {Human (Homo sapiens) [TaxId: 9606]} 84.85
d1knxa2177 HPr kinase HprK C-terminal domain {Mycoplasma pneu 84.83
d1z0ja1167 Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} 84.81
d1gm5a3264 RecG helicase domain {Thermotoga maritima [TaxId: 84.8
d1xtqa1167 GTP-binding protein RheB {Human (Homo sapiens) [Ta 84.8
d1udxa2180 Obg GTP-binding protein middle domain {Thermus the 84.76
d1yzqa1164 Rab6 {Human (Homo sapiens) [TaxId: 9606]} 84.72
d1z08a1167 Rab21 {Human (Homo sapiens) [TaxId: 9606]} 84.7
d1vg8a_184 Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} 84.68
d1puia_188 Probable GTPase EngB {Escherichia coli [TaxId: 562 84.41
d1r2qa_170 Rab5a {Human (Homo sapiens) [TaxId: 9606]} 84.14
d1e32a2258 Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu 83.92
d1kkma_176 HPr kinase HprK C-terminal domain {Lactobacillus c 83.91
d1lv7a_256 AAA domain of cell division protein FtsH {Escheric 83.86
d1i2ma_170 Ran {Human (Homo sapiens) [TaxId: 9606]} 83.74
d1fzqa_176 ADP-ribosylation factor {Mouse (Mus musculus), ARL 83.69
d1mh1a_183 Rac {Human (Homo sapiens) [TaxId: 9606]} 83.61
d1r7ra3265 Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu 83.6
d2ocpa1241 Deoxyguanosine kinase {Human (Homo sapiens) [TaxId 83.55
d1moza_182 ADP-ribosylation factor {Baker's yeast (Saccharomy 83.53
d1nija1222 Hypothetical protein YjiA, N-terminal domain {Esch 83.51
d1tf5a3273 Translocation ATPase SecA, nucleotide-binding doma 83.49
d1g8pa_333 ATPase subunit of magnesium chelatase, BchI {Rhodo 83.46
d1gsia_208 Thymidylate kinase {Mycobacterium tuberculosis [Ta 83.44
d1z0fa1166 Rab14 {Human (Homo sapiens) [TaxId: 9606]} 83.43
d2ew1a1171 Rab30 {Human (Homo sapiens) [TaxId: 9606]} 83.4
d1x1ra1169 Ras-related protein M-Ras (XRas) {Mouse (Mus muscu 83.35
d2j0sa1222 Probable ATP-dependent RNA helicase DDX48 {Human ( 83.32
d2bmea1174 Rab4a {Human (Homo sapiens) [TaxId: 9606]} 83.21
d2bcgy1194 GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi 83.18
d1ek0a_170 Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T 83.08
d1m7ba_179 RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} 82.94
d1u8za_168 Ras-related protein RalA {Cotton-top tamarin (Sagu 82.7
d1c1ya_167 Rap1A {Human (Homo sapiens) [TaxId: 9606]} 82.55
d1sq5a_308 Pantothenate kinase PanK {Escherichia coli [TaxId: 82.47
d1ko7a2169 HPr kinase HprK C-terminal domain {Staphylococcus 82.25
d2gjsa1168 Rad {Human (Homo sapiens) [TaxId: 9606]} 81.8
d1e69a_308 Smc head domain {Thermotoga maritima [TaxId: 2336] 81.52
d1zcba2200 Transducin (alpha subunit) {Mouse (Mus musculus) [ 81.45
d2g3ya1172 GTP-binding protein GEM {Human (Homo sapiens) [Tax 81.44
g1qhh.1 623 DEXX box DNA helicase {Bacillus stearothermophilus 81.36
d1xzpa2160 TrmE GTPase domain {Thermotoga maritima [TaxId: 23 81.34
d1um8a_364 ClpX {Helicobacter pylori [TaxId: 210]} 81.27
d2qm8a1323 Metallochaperone MeaB {Methylobacterium extorquens 81.09
d2atxa1185 RhoQ {Human (Homo sapiens) [TaxId: 9606]} 80.98
d2ngra_191 CDC42 {Human (Homo sapiens) [TaxId: 9606]} 80.97
d2g6ba1170 Rab26 {Human (Homo sapiens) [TaxId: 9606]} 80.95
d1tq4a_400 Interferon-inducible GTPase {Mouse (Mus musculus) 80.94
d1azta2221 Transducin (alpha subunit) {Cow (Bos taurus) [TaxI 80.93
d1e0sa_173 ADP-ribosylation factor {Human (Homo sapiens), ARF 80.64
d2fu5c1173 Rab8a {Mouse (Mus musculus) [TaxId: 10090]} 80.31
d1wb1a4179 Elongation factor SelB, N-terminal domain {Methano 80.24
d1e9ra_433 Bacterial conjugative coupling protein TrwB {Esche 80.13
d2mysa2 794 Myosin S1, motor domain {Chicken (Gallus gallus), 80.08
d2bmja1175 Centaurin gamma 1, G domain {Human (Homo sapiens) 80.06
>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: Dengue virus helicase
species: Dengue virus type 2 [TaxId: 11060]

Probab=99.97  E-value=8.5e-32  Score=270.96  Aligned_cols=294  Identities=20%  Similarity=0.233  Sum_probs=198.1

Q ss_pred             HHhcCCEEEEEcCCCCchhhhhhhhhhcCccCCChhhcCceEEEEecCcccccccHHHHHHHhhhhcccchhceee-eec
Q 008221           77 VLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSI-RFE  155 (573)
Q Consensus        77 ~i~~g~~v~i~G~tGSGKTT~l~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~~~~~~vg~~~-~~~  155 (573)
                      .+++|+++++.||||||||+++...++.... .  ...+.++++   |++..+.++++++....       ++... ...
T Consensus         5 ~~~~~~~~lv~~~TGsGKT~~~l~~~~~~~~-~--~~~~~lvi~---Ptr~La~q~~~~l~~~~-------~~~~~~~~~   71 (305)
T d2bmfa2           5 IFRKKRLTIMDLHPGAGKTKRYLPAIVREAI-K--RGLRTLILA---PTRVVAAEMEEALRGLP-------IRYQTPAIR   71 (305)
T ss_dssp             SSSTTCEEEECCCTTSSTTTTHHHHHHHHHH-H--HTCCEEEEE---SSHHHHHHHHHHTTTSC-------CBCCC----
T ss_pred             HhhcCCcEEEEECCCCCHHHHHHHHHHHHHH-h--cCCEEEEEc---cHHHHHHHHHHHHhcCC-------cceeeeEEe
Confidence            4678999999999999999977645443221 0  112234444   44443444554443211       11111 112


Q ss_pred             ccccccccccccCHHHHHHHHhcccccCCCcEEEEeCCCcCcccHHHHHHHHHHHHHhCCCcEEEEecccccHHHHHchh
Q 008221          156 DCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEAEKFQGYF  235 (573)
Q Consensus       156 ~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lILDEa~~r~~~~d~ll~~l~~l~~~~~~~~iil~SATl~~~~~~~~~  235 (573)
                      ......+.+.+.|+|.+.........+.+++++|+||+|........+...++.+... ++.+++++|||.+........
T Consensus        72 ~~~~~~~~i~~~t~~~l~~~~~~~~~~~~~~~vViDE~H~~~~~~~~~~~~l~~~~~~-~~~~~v~~SAT~~~~~~~~~~  150 (305)
T d2bmfa2          72 AEHTGREIVDLMCHATFTMRLLSPIRVPNYNLIIMDEAHFTDPASIAARGYISTRVEM-GEAAGIFMTATPPGSRDPFPQ  150 (305)
T ss_dssp             ----CCCSEEEEEHHHHHHHHTSSSCCCCCSEEEEESTTCCSHHHHHHHHHHHHHHHH-TSCEEEEECSSCTTCCCSSCC
T ss_pred             ecccCccccccCCcHHHHHHHhcCccccceeEEEeeeeeecchhhHHHHHHHHHhhcc-ccceEEEeecCCCcceeeecc
Confidence            2233456778889999998888877799999999999998655566667777776554 488999999998532211111


Q ss_pred             CCCCeeeecCcccCCcccccCCCchhHHHHHHHHHHHHhhcCCCCCEEEecCcHHHHHHHHHHHHHHHhhcCCCCCCeEE
Q 008221          236 YGAPLMKVPGRLHPVEIFYTQEPERDYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKV  315 (573)
Q Consensus       236 ~~~~~i~v~g~~~~v~~~y~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~v  315 (573)
                      ...++....... +  ....    ....         ......++++|||++++++++.+++.|.+.         ++.+
T Consensus       151 ~~~~~~~~~~~~-~--~~~~----~~~~---------~~~~~~~~~~lvf~~~~~~~~~l~~~L~~~---------~~~~  205 (305)
T d2bmfa2         151 SNAPIMDEEREI-P--ERSW----NSGH---------EWVTDFKGKTVWFVPSIKAGNDIAACLRKN---------GKKV  205 (305)
T ss_dssp             CSSCEEEEECCC-C--CSCC----SSCC---------HHHHSSCSCEEEECSCHHHHHHHHHHHHHH---------TCCC
T ss_pred             cCCcceEEEEec-c--HHHH----HHHH---------HHHHhhCCCEEEEeccHHHHHHHHHHHHhC---------CCCE
Confidence            222332221110 0  0000    0000         011245678999999999999999999876         6778


Q ss_pred             EEecCCCCHHHHhhhcCCCCCCCCCCCCCCceEEEeecccccccccCCeEEEEcCCccccee--ecccCCcccceeeecc
Q 008221          316 VPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKV--YNPRVRVESLLVSPIS  393 (573)
Q Consensus       316 ~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kvllaT~iae~gitI~~V~~VId~g~~k~~~--~d~~~~~~~l~~~p~s  393 (573)
                      ..+||++++..+..    ++++.       +++++|||++++|+|+ ++++|||+|......  ||+..+...+...|+|
T Consensus       206 ~~l~~~~~~~~~~~----~~~~~-------~~~lvaT~~~~~G~~~-~~~~Vi~~~~~~~~~~~~~~~~~~~~~~~~~~s  273 (305)
T d2bmfa2         206 IQLSRKTFDSEYIK----TRTND-------WDFVVTTDISEMGANF-KAERVIDPRRCMKPVILTDGEERVILAGPMPVT  273 (305)
T ss_dssp             EECCTTCHHHHGGG----GGTSC-------CSEEEECGGGGTTCCC-CCSEEEECCEEEEEEEECSSSCEEEEEEEEECC
T ss_pred             EEeCCcChHHHHhh----hhccc-------hhhhhhhHHHHhcCCC-CccEEEEcCCceeeeEecCCCCceEEeccccCC
Confidence            99999998766544    45555       8999999999999999 699999999765544  8899999999999999


Q ss_pred             HhhHHHhccccCCCC-CCeEEeccchhhh
Q 008221          394 KASAHQRSGRAGRTQ-PGKCFRLYTEKSF  421 (573)
Q Consensus       394 ~~~~~qR~GRaGR~~-~G~~~~l~t~~~~  421 (573)
                      .++|+||+|||||.+ .|....+|..+..
T Consensus       274 ~~~~~Qr~GR~GR~~~~~~~~~~~~~~~~  302 (305)
T d2bmfa2         274 HSSAAQRRGRVGRNPKNENDQYIYMGEPL  302 (305)
T ss_dssp             HHHHHHHHTTSSCSSSCCCEEEEECSCCC
T ss_pred             HHHHhhhhcCcCcCCCCceEEEEECCCCC
Confidence            999999999999995 4555567776544
>d1yksa2 c.37.1.14 (A:325-623) YFV helicase domain {Yellow fever virus [TaxId: 11089]} Back     information, alignment and structure
>d1fuka_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2j0sa2 c.37.1.19 (A:244-411) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1s2ma2 c.37.1.19 (A:252-422) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1t5ia_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1oywa3 c.37.1.19 (A:207-406) RecQ helicase domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1t5la2 c.37.1.19 (A:415-595) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]} Back     information, alignment and structure
>d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1c4oa2 c.37.1.19 (A:410-583) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1jr6a_ c.37.1.14 (A:) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Back     information, alignment and structure
>d1wrba1 c.37.1.19 (A:164-401) putative ATP-dependent RNA helicase VlgB {Flatworm (Dugesia japonica) [TaxId: 6161]} Back     information, alignment and structure
>d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1q0ua_ c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Back     information, alignment and structure
>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Back     information, alignment and structure
>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1a1va2 c.37.1.14 (A:326-624) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Back     information, alignment and structure
>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2p6ra4 c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Back     information, alignment and structure
>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1gm5a4 c.37.1.19 (A:550-755) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Back     information, alignment and structure
>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1gkub2 c.37.1.16 (B:251-498) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d2eyqa5 c.37.1.19 (A:779-989) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2fwra1 c.37.1.19 (A:257-456) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Back     information, alignment and structure
>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} Back     information, alignment and structure
>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1tf5a4 c.37.1.19 (A:396-570) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1z3ix1 c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} Back     information, alignment and structure
>d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1z5za1 c.37.1.19 (A:663-906) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d1rifa_ c.37.1.23 (A:) DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665]} Back     information, alignment and structure
>d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} Back     information, alignment and structure
>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} Back     information, alignment and structure
>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1nkta4 c.37.1.19 (A:397-615) Translocation ATPase SecA, nucleotide-binding domains {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} Back     information, alignment and structure
>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} Back     information, alignment and structure
>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} Back     information, alignment and structure
>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} Back     information, alignment and structure
>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Back     information, alignment and structure
>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} Back     information, alignment and structure
>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} Back     information, alignment and structure
>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]} Back     information, alignment and structure
>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} Back     information, alignment and structure
>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} Back     information, alignment and structure
>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} Back     information, alignment and structure
>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} Back     information, alignment and structure
>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d1z3ix2 c.37.1.19 (X:92-389) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} Back     information, alignment and structure
>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} Back     information, alignment and structure
>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Back     information, alignment and structure
>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} Back     information, alignment and structure
>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} Back     information, alignment and structure
>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} Back     information, alignment and structure
>d1z63a1 c.37.1.19 (A:432-661) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} Back     information, alignment and structure
>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} Back     information, alignment and structure
>d1xx6a1 c.37.1.24 (A:2-142) Thymidine kinase, TK1, N-terminal domain {Clostridium acetobutylicum [TaxId: 1488]} Back     information, alignment and structure
>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xbta1 c.37.1.24 (A:18-150) Thymidine kinase, TK1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} Back     information, alignment and structure
>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} Back     information, alignment and structure
>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} Back     information, alignment and structure
>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]} Back     information, alignment and structure
>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} Back     information, alignment and structure
>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]} Back     information, alignment and structure
>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} Back     information, alignment and structure
>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} Back     information, alignment and structure
>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2p6ra1 a.4.5.43 (A:404-488) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} Back     information, alignment and structure
>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} Back     information, alignment and structure
>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} Back     information, alignment and structure
>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} Back     information, alignment and structure
>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} Back     information, alignment and structure
>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} Back     information, alignment and structure
>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Back     information, alignment and structure
>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} Back     information, alignment and structure
>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} Back     information, alignment and structure
>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} Back     information, alignment and structure
>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} Back     information, alignment and structure
>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} Back     information, alignment and structure
>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken (Gallus gallus), Va isoform [TaxId: 9031]} Back     information, alignment and structure
>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]} Back     information, alignment and structure
>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} Back     information, alignment and structure
>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain {Dictyostelium discoideum [TaxId: 44689]} Back     information, alignment and structure
>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} Back     information, alignment and structure
>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]} Back     information, alignment and structure
>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} Back     information, alignment and structure
>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} Back     information, alignment and structure
>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} Back     information, alignment and structure
>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} Back     information, alignment and structure
>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} Back     information, alignment and structure
>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1tf5a3 c.37.1.19 (A:1-226,A:349-395) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} Back     information, alignment and structure
>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} Back     information, alignment and structure
>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} Back     information, alignment and structure
>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} Back     information, alignment and structure
>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} Back     information, alignment and structure
>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} Back     information, alignment and structure
>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} Back     information, alignment and structure
>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]} Back     information, alignment and structure
>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure