Citrus Sinensis ID: 008231

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570---
Protein Sequence
MVLVASHGEKDEAENVVDFRGNPVDRSKTGGWLAAGLILGTELSERICAMGISMNLVTYLVGDLHLSSAKSATIVTNFMGTLNLLGLLGGFLADAKLGRYLTVAIFASVTALVVGLLTSATSIPSMRPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKAMIFFFNRFYFAISIGSLFAVIVLVYVQDNVGRGWGYGISAGTMVVAAAILLIGTPWYRFKKPRGSPLTVIWRVLLLAWKKRSHPYPDHPSLLNEYQNAKVPHTEKFKCLDKAAIIEDNAVANENKNNSWIVSTVTEVEEVKMVLKLLPIWATCILFWTVYSQMTTFTVEQATFMNRKIGSFTVPSGSLSAFLFITILLFTSLNEKVFVPLARKITHSIQGMTSLQRVGTGLIFSVIAMIVSAVIEQQRRETSVQKHIQISAFWLVPQYFLVGAGEAFVYVGQLEFFIREGPERMKSMSTGLFLSAISMGMFVSSMLVSIVDKITNKHWLRSNLNKGKLNNFYWLLAVLGLLNFMVFLFFAMKHQYNVQHRVKGDKELENFNDGKV
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHccHHHHHHHHHHHHHHHEEEEEEEEEccccccccHHHHHHHHHHHHHHHHccccEEEEcccccccHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccEEcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHccccEEEccccccHHHHHHHHHHHHHHHccccccccHHHHHcccccccccccccEEHccEEEEEcccccccccccccEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEHEEHcHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHcccccccc
Coil and Loop (DISEMBL)
mvlvashgekdeaenvvdfrgnpvdrsktggwlAAGLILGTELSERICAMGISMNLVTYLVGDLHLSSAKSATIVTNFMGTLNLLGLLGgfladaklGRYLTVAIFASVTALVVGLLTsatsipsmrppqcddyrrKHHQCIEANGKQLAMLYAALYTIALggggiksnvsgfgsdqfdtsdpkeEKAMIFFFNRFYFAISIGSLFAVIVLVYVQDnvgrgwgygiSAGTMVVAAAILLIgtpwyrfkkprgsplTVIWRVLLLAWKkrshpypdhpsllneyqnakvphtekfkcldkAAIIEDnavanenknnsWIVSTVTEVEEVKMVLKLLPIWATCILFWTVYSQMTTFTVEQATFMnrkigsftvpsgslsAFLFITILLFTSLNEKVFVPLARKITHSIQGMTSLQRVGTGLIFSVIAMIVSAVIEQQRRETSVQKHIQISAFWLVPQYFLVGAGEAFVYVGQLEFFIREGPERMKSMSTGLFLSAISMGMFVSSMLVSIVDKITNKHWLrsnlnkgklnnFYWLLAVLGLLNFMVFLFFAMKHQYNvqhrvkgdkelenfndgkv
Flexible Loop (DISEMBL)
mvlvashgekdeaenvvdfrgnpvdrsktggWLAAGLILGTELSERICAMGISMNLVTYLVGDLHLSSAKSATIVTNFMGTLNLLGLLGGFLADAKLGRYLTVAIFASVTALVVGLLTsatsipsmrppQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKAMIFFFNRFYFAISIGSLFAVIVLVYVQDNVGRGWGYGISAGTMVVAAAILLIGTPWYRFKKPRGSPLTVIWRVLLLAWKKRSHPYPDHPSLLNEYQNAKVPHTEKFKCLDKAAIIEDnavanenknnsWIVSTVTEVEEVKMVLKLLPIWATCILFWTVYSQMTTFTVEQATFMNRKIGSFTVPSGSLSAFLFITILLFTSLNEKVFVPLARKITHSIQGMTSLQRVGTGLIFSVIAMIVSAVIEQQRRETSVQKHIQISAFWLVPQYFLVGAGEAFVYVGQLEFFIREGPERMKSMSTGLFLSAISMGMFVSSMLVSIVDKITNKHWLRSNLNKGKLNNFYWLLAVLGLLNFMVFLFFAMKHQYNVQHrvkgdkelenfndgkv
Low Complexity Region (SEG)
MVLVASHGEKDEAENVVDFRGNPVDRSKTGGWLAAGLILGTELSERICAMGISMNLVTYLVGDLHLSSAKSATIVTNFMgtlnllgllggfladaklgRYLTVAIFASVTALVVGLLTSATSIPSMRPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKAMIFFFNRFYFAISIGSLFAVIVLVYVQDNVGRGWGYGISAGTMVVAAAILLIGTPWYRFKKPRGSPLTVIWRVLLLAWKKRSHPYPDHPSLLNEYQNAKVPHTEKFKCLDKAAIIEDNAVANENKNNSWIVSTVTEVEEVKMVLKLLPIWATCILFWTVYSQMTTFTVEQATFMNRKIGSFTVPSGslsaflfitillftslNEKVFVPLARKITHSIQGMTSLQRVGTGLIFSVIAMIVSAVIEQQRRETSVQKHIQISAFWLVPQYFLVGAGEAFVYVGQLEFFIREGPERMKSMSTGLFLSAISMGMFVSSMLVSIVDKITNKHWLRSNLNKGKLNNFYWLLAVLGLLNFMVFLFFAMKHQYNVQHRVKGDKELENFNDGKV
Disordered region (IsUnstruct)
**************************SKTGGWLAAGLILGTELSERICAMGISMNLVTYLVGDLHLSSAKSATIVTNFMGTLNLLGLLGGFLADAKLGRYLTVAIFASVTALVVGLLTSATSI*******CDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGF**************AMIFFFNRFYFAISIGSLFAVIVLVYVQDNVGRGWGYGISAGTMVVAAAILLIGTPWYRFKKPRGSPLTVIWRVLLLAWKKRSHPYPDHPSLLNEYQNAKVPHTEKFKCLDKAAIIEDNAVANENKNNSWIVSTVTEVEEVKMVLKLLPIWATCILFWTVYSQMTTFTVEQATFMNRKIGSFTVPSGSLSAFLFITILLFTSLNEKVFVPLARKITHSIQGMTSLQRVGTGLIFSVIAMIVSAVIEQQRRETSVQKHIQISAFWLVPQYFLVGAGEAFVYVGQLEFFIREGPERMKSMSTGLFLSAISMGMFVSSMLVSIVDKITNKHWLRSNLNKGKLNNFYWLLAVLGLLNFMVFLFFAMKHQYNVQHR***************
Disordered Region (DISOPRED)
***************VVDFRGNPV*****GGWLAAGLILGTELSERICAMGISMNLVTYLVGDLHLSSAKSATIVTNFMGTLNLLGLLGGFLADAKLGRYLTVAIFASVTALVVGLLTSATSIPSMRPPQCD************NGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKAMIFFFNRFYFAISIGSLFAVIVLVYVQDNVGRGWGYGISAGTMVVAAAILLIGTPWYRFKKPRGSPLTVIWRVLLLAWKKRSHPYPDHP*************TEKFKCLDKAA****************IVSTVTEVEEVKMVLKLLPIWATCILFWTVYSQMTTFTVEQATFMNRKIGSFTVPSGSLSAFLFITILLFTSLNEKVFVPLARKITHSIQGMTSLQRVGTGLIFSVIAMIVSAVIEQQRRETSVQKHIQISAFWLVPQYFLVGAGEAFVYVGQLEFFIREGPERMKSMSTGLFLSAISMGMFVSSMLVSIVDKITNKHWLRSNLNKGKLNNFYWLLAVLGLLNFMVFLFFAMKHQ*********************
Disordered Region (DISEMBL)
************AENVVDFRGNPVDRSKTGGWLAAGLILGTELSERICAMGISMNLVTYLVGDLHLSSAKSATIVTNFMGTLNLLGLLGGFLADAKLGRYLTVAIFASVTALVVGLLTSATSIPSMRPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKAMIFFFNRFYFAISIGSLFAVIVLVYVQDNVGRGWGYGISAGTMVVAAAILLIGTPWYRFKKPRGSPLTVIWRVLLLAWKKRSHPYPDHPSLLNEYQNAKVPHTEKFKCLDKAAIIEDNAVANENKNNSWIVSTVTEVEEVKMVLKLLPIWATCILFWTVYSQMTTFTVEQATFMNRKIGSFTVPSGSLSAFLFITILLFTSLNEKVFVPLARKITHSIQGMTSLQRVGTGLIFSVIAMIVSAVIEQ********KHIQISAFWLVPQYFLVGAGEAFVYVGQLEFFIREGPERMKSMSTGLFLSAISMGMFVSSMLVSIVDKITNKHWLRSNLNKGKLNNFYWLLAVLGLLNFMVFLFFAMKHQYNVQHRVKGDKELENFNDGKV
Disordered Region (DISPRO)
***********EAENVVDFRGNPVDRSKTGGWLAAGLILGTELSERICAMGISMNLVTYLVGDLHLSSAKSATIVTNFMGTLNLLGLLGGFLADAKLGRYLTVAIFASVTALVVGLLTSATSIPSMRPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKAMIFFFNRFYFAISIGSLFAVIVLVYVQDNVGRGWGYGISAGTMVVAAAILLIGTPWYRFKKPRGSPLTVIWRVLLLAWKKRSHPYPDHPSLLNEYQNAKVPHTEKFKCLDKAAIIEDNAVANENKNNSWIVSTVTEVEEVKMVLKLLPIWATCILFWTVYSQMTTFTVEQATFMNRKIGSFTVPSGSLSAFLFITILLFTSLNEKVFVPLARKITHSIQGMTSLQRVGTGLIFSVIAMIVSAVIEQQRRETSVQKHIQISAFWLVPQYFLVGAGEAFVYVGQLEFFIREGPERMKSMSTGLFLSAISMGMFVSSMLVSIVDKITNKHWLRSNLNKGKLNNFYWLLAVLGLLNFMVFLFFAMKHQYNVQ*****************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVLVASHGEKDEAENVVDFRGNPVDRSKTGGWLAAGLILGTELSERICAMGISMNLVTYLVGDLHLSSAKSATIVTNFMGTLNLLGLLGGFLADAKLGRYLTVAIFASVTALVVGLLTSATSIPSMRPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKAMIFFFNRFYFAISIGSLFAVIVLVYVQDNVGRGWGYGISAGTMVVAAAILLIGTPWYRFKKPRGSPLTVIWRVLLLAWKKRSHPYPDHPSLLNEYQNAKVPHTEKFKCLDKAAIIEDNAVANENKNNSWIVSTVTEVEEVKMVLKLLPIWATCILFWTVYSQMTTFTVEQATFMNRKIGSFTVPSGSLSAFLFITILLFTSLNEKVFVPLARKITHSIQGMTSLQRVGTGLIFSVIAMIVSAVIEQQRRETSVQKHIQISAFWLVPQYFLVGAGEAFVYVGQLEFFIREGPERMKSMSTGLFLSAISMGMFVSSMLVSIVDKITNKHWLRSNLNKGKLNNFYWLLAVLGLLNFMVFLFFAMKHQYNVQHRVKGDKELENFNDGKV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	573	2.2.26 [Sep-21-2011]
Q9LVE0	590	Nitrate transporter 1.3 O	yes	no	0.963	0.935	0.769	0.0
Q05085	590	Nitrate transporter 1.1 O	no	no	0.956	0.928	0.492	1e-155
Q9SZY4	577	Nitrate transporter 1.4 O	no	no	0.921	0.915	0.505	1e-144
Q9M390	570	Peptide transporter PTR1	no	no	0.940	0.945	0.413	1e-124
P46032	585	Peptide transporter PTR2	no	no	0.930	0.911	0.406	1e-120
Q9LFB8	570	Peptide transporter PTR5	no	no	0.928	0.933	0.405	1e-116
Q93Z20	590	Probable peptide/nitrate	no	no	0.944	0.916	0.389	1e-112
Q93VV5	591	Probable peptide/nitrate	no	no	0.952	0.923	0.383	1e-107
Q56XQ6	601	Probable peptide/nitrate	no	no	0.975	0.930	0.368	1e-103
Q9FNL7	582	Peptide transporter PTR3-	no	no	0.910	0.896	0.379	1e-102

>sp|Q9LVE0|PTR33_ARATH Nitrate transporter 1.3 OS=Arabidopsis thaliana GN=NRT1.3 PE=1 SV=1

 Score =  848 bits (2191), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 427/555 (76%), Positives = 474/555 (85%), Gaps = 3/555 (0%)

Query: 5   ASHGEKDEAENVVDFRGNPVDRSKTGGWLAAGLILGTELSERICAMGISMNLVTYLVGDL 64
           +SHG KD +E   D+RGNP D+SKTGGWL AGLILG+ELSERIC MGISMNLVTYLVGDL
Sbjct: 6   SSHGAKDGSEEAYDYRGNPPDKSKTGGWLGAGLILGSELSERICVMGISMNLVTYLVGDL 65

Query: 65  HLSSAKSATIVTNFMGTLNLLGLLGGFLADAKLGRYLTVAIFASVTALVVGLLTSATSIP 124
           H+SSAKSATIVTNFMGTLNLLGLLGGFLADAKLGRY  VAI ASVTAL V LLT AT+I 
Sbjct: 66  HISSAKSATIVTNFMGTLNLLGLLGGFLADAKLGRYKMVAISASVTALGVLLLTVATTIS 125

Query: 125 SMRPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPK 184
           SMRPP CDD+RR HHQCIEANG QLA+LY ALYTIALGGGGIKSNVSGFGSDQFDTSDPK
Sbjct: 126 SMRPPICDDFRRLHHQCIEANGHQLALLYVALYTIALGGGGIKSNVSGFGSDQFDTSDPK 185

Query: 185 EEKAMIFFFNRFYFAISIGSLFAVIVLVYVQDNVGRGWGYGISAGTMVVAAAILLIGTPW 244
           EEK MIFFFNRFYF+IS+GSLFAVI LVYVQDNVGRGWGYGISA TMVVAA +LL GT  
Sbjct: 186 EEKQMIFFFNRFYFSISVGSLFAVIALVYVQDNVGRGWGYGISAATMVVAAIVLLCGTKR 245

Query: 245 YRFKKPRGSPLTVIWRVLLLAWKKRSHPYPDHPSLLNEYQNAKVPHTEKFKCLDKAAIIE 304
           YRFKKP+GSP T IWRV  LAWKKR   YP HPSLLN Y N  VPHTE  KCLDKAAI +
Sbjct: 246 YRFKKPKGSPFTTIWRVGFLAWKKRKESYPAHPSLLNGYDNTTVPHTEMLKCLDKAAISK 305

Query: 305 DNAVANE---NKNNSWIVSTVTEVEEVKMVLKLLPIWATCILFWTVYSQMTTFTVEQATF 361
           + +  +     + + WIVSTVT+VEEVK+V+KL+PIWAT ILFWT+YSQMTTFTVEQATF
Sbjct: 306 NESSPSSKDFEEKDPWIVSTVTQVEEVKLVMKLVPIWATNILFWTIYSQMTTFTVEQATF 365

Query: 362 MNRKIGSFTVPSGSLSAFLFITILLFTSLNEKVFVPLARKITHSIQGMTSLQRVGTGLIF 421
           M+RK+GSFTVP+GS SAFL +TILLFTSLNE+VFVPL R++T   QG+TSLQR+G GL+F
Sbjct: 366 MDRKLGSFTVPAGSYSAFLILTILLFTSLNERVFVPLTRRLTKKPQGITSLQRIGVGLVF 425

Query: 422 SVIAMIVSAVIEQQRRETSVQKHIQISAFWLVPQYFLVGAGEAFVYVGQLEFFIREGPER 481
           S+ AM V+AVIE  RRE +V    +ISAFWLVPQYFLVGAGEAF YVGQLEFFIRE PER
Sbjct: 426 SMAAMAVAAVIENARREAAVNNDKKISAFWLVPQYFLVGAGEAFAYVGQLEFFIREAPER 485

Query: 482 MKSMSTGLFLSAISMGMFVSSMLVSIVDKITNKHWLRSNLNKGKLNNFYWLLAVLGLLNF 541
           MKSMSTGLFLS ISMG FVSS+LVS+VD++T+K WLRSNLNK +LN FYWLL VLG LNF
Sbjct: 486 MKSMSTGLFLSTISMGFFVSSLLVSLVDRVTDKSWLRSNLNKARLNYFYWLLVVLGALNF 545

Query: 542 MVFLFFAMKHQYNVQ 556
           ++F+ FAMKHQY   
Sbjct: 546 LIFIVFAMKHQYKAD 560

Low-affinity nitrate transporter.
Arabidopsis thaliana (taxid: 3702)

>sp|Q05085|PTR7_ARATH Nitrate transporter 1.1 OS=Arabidopsis thaliana GN=NRT1.1 PE=1 SV=1

 Score =  547 bits (1409), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 280/568 (49%), Positives = 389/568 (68%), Gaps = 20/568 (3%)

Query: 18  DFRGNPVDRSKTGGWLAAGLILGTELSERICAMGISMNLVTYLVGDLHLSSAKSATIVTN 77
           DF+G P DRSKTGGW +A +IL  E  ER+  +GI +NLVTYL G +HL +A +A  VTN
Sbjct: 17  DFQGRPADRSKTGGWASAAMILCIEAVERLTTLGIGVNLVTYLTGTMHLGNATAANTVTN 76

Query: 78  FMGTLNLLGLLGGFLADAKLGRYLTVAIFASVTALVVGLLTSATSIPSMRPPQCDDYRRK 137
           F+GT  +L LLGGF+AD  LGRYLT+AIFA++ A  V +LT +T IP +RPP+C+     
Sbjct: 77  FLGTSFMLCLLGGFIADTFLGRYLTIAIFAAIQATGVSILTLSTIIPGLRPPRCNPTTSS 136

Query: 138 HHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKAMIFFFNRFY 197
           H  C +A+G QL +LY ALY  ALG GG+K++VSGFGSDQFD ++PKE   M +FFNRF+
Sbjct: 137 H--CEQASGIQLTVLYLALYLTALGTGGVKASVSGFGSDQFDETEPKERSKMTYFFNRFF 194

Query: 198 FAISIGSLFAVIVLVYVQDNVGRGWGYGISAGTMVVAAAILLIGTPWYRFKKPRGSPLTV 257
           F I++GSL AV VLVYVQD+VGR WGYGI A  +V+A ++ L GT  YRFKK  GSP+T 
Sbjct: 195 FCINVGSLLAVTVLVYVQDDVGRKWGYGICAFAIVLALSVFLAGTNRYRFKKLIGSPMTQ 254

Query: 258 IWRVLLLAWKKRSHPYPDHPSLLNEYQN-----------AKVPHTEKFKCLDKAAIIEDN 306
           +  V++ AW+ R    P  PS L +  +            K+PHTE+F+ LDKAAI +  
Sbjct: 255 VAAVIVAAWRNRKLELPADPSYLYDVDDIIAAEGSMKGKQKLPHTEQFRSLDKAAIRDQE 314

Query: 307 AVANENKNNSWIVSTVTEVEEVKMVLKLLPIWATCILFWTVYSQMTTFTVEQATFMNRKI 366
           A    N  N W +ST+T+VEEVK ++++LPIWATCILFWTV++Q+TT +V Q+  ++R I
Sbjct: 315 AGVTSNVFNKWTLSTLTDVEEVKQIVRMLPIWATCILFWTVHAQLTTLSVAQSETLDRSI 374

Query: 367 GSFTVPSGSLSAFLFITILLFTSLNEKVFVPLARKITHSIQGMTSLQRVGTGLIFSVIAM 426
           GSF +P  S++ F    +LL T++ ++V + L +K+ +   G+  LQR+G GL F  +AM
Sbjct: 375 GSFEIPPASMAVFYVGGLLLTTAVYDRVAIRLCKKLFNYPHGLRPLQRIGLGLFFGSMAM 434

Query: 427 IVSAVIEQQRRETS-----VQKHIQISAFWLVPQYFLVGAGEAFVYVGQLEFFIREGPER 481
            V+A++E +R  T+       K + +  + L+PQY +VG GEA +Y GQL+FF+RE P+ 
Sbjct: 435 AVAALVELKRLRTAHAHGPTVKTLPLGFYLLIPQYLIVGIGEALIYTGQLDFFLRECPKG 494

Query: 482 MKSMSTGLFLSAISMGMFVSSMLVSIVDKITNKH--WLRSNLNKGKLNNFYWLLAVLGLL 539
           MK MSTGL LS +++G F SS+LV+IV+K T K   W+  +LNKG+L NFYWL+AVL  L
Sbjct: 495 MKGMSTGLLLSTLALGFFFSSVLVTIVEKFTGKAHPWIADDLNKGRLYNFYWLVAVLVAL 554

Query: 540 NFMVFLFFAMKHQYNVQHRVKGDKELEN 567
           NF++FL F+  + Y  +   +   EL++
Sbjct: 555 NFLIFLVFSKWYVYKEKRLAEVGIELDD 582

Dual affinity nitrate transporter. Involved in proton-dependent nitrate uptake and in the regulation of the nitrate transporter NRT2.1. Acts also as a nitrate sensor that trigger a specific signaling pathway stimulating lateral root growth and seed germination. The uptake activity is not required for sensor function. Displays an auxin transport facilitation inhibited by high nitrate concentration. Required to prevent auxin accumulation in preemerged lateral root primordia and young lateral roots when external nitrate concentration is low or null. May be involved in the basipetal transport of auxin out of the lateral root tips.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SZY4|PTR27_ARATH Nitrate transporter 1.4 OS=Arabidopsis thaliana GN=NRT1.4 PE=1 SV=1

 Score =  513 bits (1322), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 278/550 (50%), Positives = 378/550 (68%), Gaps = 22/550 (4%)

Query: 15  NVVDFRGNPVDRSKTGGWLAAGLILGTELSERICAMGISMNLVTYLVGDLHLSSAKSATI 74
           + VD++G P D+SKTGGW+ A LILG E+ ER+  MGI++NLVTYL+  +HL S+ SA I
Sbjct: 11  DAVDYKGRPADKSKTGGWITAALILGIEVVERLSTMGIAVNLVTYLMETMHLPSSTSANI 70

Query: 75  VTNFMGTLNLLGLLGGFLADAKLGRYLTVAIFASVTALVVGLLTSATSIPSMRPPQCDDY 134
           VT+FMGT  LL LLGGFLAD+ LGR+ T+ IF+++ AL  G L  AT +P +RPP C   
Sbjct: 71  VTDFMGTSFLLCLLGGFLADSFLGRFKTIGIFSTIQALGTGALAVATKLPELRPPTC--- 127

Query: 135 RRKHH--QCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKAMIFF 192
              HH   CI A   Q+ +LY +LY IALG GG+KS++SGFGSDQFD  DPKE+  M FF
Sbjct: 128 ---HHGEACIPATAFQMTILYVSLYLIALGTGGLKSSISGFGSDQFDDKDPKEKAHMAFF 184

Query: 193 FNRFYFAISIGSLFAVIVLVYVQDNVGRGWGYGISAGTMVVAAAILLIGTPWYRFKKPRG 252
           FNRF+F IS+G+L AV VLVY+QD VGR W YGI   +M +A  I L GT  YR+KK +G
Sbjct: 185 FNRFFFFISMGTLLAVTVLVYMQDEVGRSWAYGICTVSMAIAIVIFLCGTKRYRYKKSQG 244

Query: 253 SPLTVIWRVLLLAWKKRSHPYPDHPSLLNE--YQNAKVPHTEKFKCLDKAAIIEDNAVAN 310
           SP+  I++V+  A++KR    P     L E   +  ++ HT++F  LDKAAI+ +     
Sbjct: 245 SPVVQIFQVIAAAFRKRKMELPQSIVYLYEDNPEGIRIEHTDQFHLLDKAAIVAEGDFEQ 304

Query: 311 ENKN----NSWIVSTVTEVEEVKMVLKLLPIWATCILFWTVYSQMTTFTVEQATFMNRKI 366
                   N W +S+VT+VEEVKM+++LLPIWAT I+FWT Y+QM TF+VEQA+ M R I
Sbjct: 305 TLDGVAIPNPWKLSSVTKVEEVKMMVRLLPIWATTIIFWTTYAQMITFSVEQASTMRRNI 364

Query: 367 GSFTVPSGSLSAFLFITILLFTSLNEKVFVPLARKITHSIQGMTSLQRVGTGLIFSVIAM 426
           GSF +P+GSL+ F    IL+  ++ ++  +P  +K      G +SLQR+  GL+ S   M
Sbjct: 365 GSFKIPAGSLTVFFVAAILITLAVYDRAIMPFWKKWKGK-PGFSSLQRIAIGLVLSTAGM 423

Query: 427 IVSAVIEQQR---RETSVQKHIQISAFWLVPQYFLVGAGEAFVYVGQLEFFIREGPERMK 483
             +A++EQ+R    ++S QK + IS F LVPQ+FLVGAGEAF+Y GQL+FFI + P+ MK
Sbjct: 424 AAAALVEQKRLSVAKSSSQKTLPISVFLLVPQFFLVGAGEAFIYTGQLDFFITQSPKGMK 483

Query: 484 SMSTGLFLSAISMGMFVSSMLVSIVDKITNKH----WLRSNLNKGKLNNFYWLLAVLGLL 539
           +MSTGLFL+ +S+G FVSS LVSIV ++T+      WL  N+N G+L+ FYWLL +L  +
Sbjct: 484 TMSTGLFLTTLSLGFFVSSFLVSIVKRVTSTSTDVGWLADNINHGRLDYFYWLLVILSGI 543

Query: 540 NFMVFLFFAM 549
           NF+V++  A+
Sbjct: 544 NFVVYIICAL 553

Low-affinity proton-dependent nitrate transporter. Not involved in dipeptides transport.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M390|PTR1_ARATH Peptide transporter PTR1 OS=Arabidopsis thaliana GN=PTR1 PE=2 SV=1

 Score =  446 bits (1148), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 234/566 (41%), Positives = 348/566 (61%), Gaps = 27/566 (4%)

Query: 9   EKD--EAENVVDFRGNPVDRSKTGGWLAAGLILGTELSERICAMGISMNLVTYLVGDLHL 66
           EKD    +  VD   NP ++ KTG W A   ILG E  ER+   G+  NLV YL   L+ 
Sbjct: 3   EKDVYTQDGTVDIHKNPANKEKTGNWKACRFILGNECCERLAYYGMGTNLVNYLESRLNQ 62

Query: 67  SSAKSATIVTNFMGTLNLLGLLGGFLADAKLGRYLTVAIFASVTALVVGLLTSATSIPSM 126
            +A +A  VTN+ GT  +  L+G F+ADA LGRY T+A F  +    + LLT + S+P +
Sbjct: 63  GNATAANNVTNWSGTCYITPLIGAFIADAYLGRYWTIATFVFIYVSGMTLLTLSASVPGL 122

Query: 127 RPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEE 186
           +P  C+            N  Q A+ + ALY IALG GGIK  VS FG+DQFD +D  E+
Sbjct: 123 KPGNCN------ADTCHPNSSQTAVFFVALYMIALGTGGIKPCVSSFGADQFDENDENEK 176

Query: 187 KAMIFFFNRFYFAISIGSLFAVIVLVYVQDNVGRGWGYGISAGTMVVAAAILLIGTPWYR 246
                FFN FYF+I++G+L A  VLV++Q NVG GWG+G+    MV+A      G+ +YR
Sbjct: 177 IKKSSFFNWFYFSINVGALIAATVLVWIQMNVGWGWGFGVPTVAMVIAVCFFFFGSRFYR 236

Query: 247 FKKPRGSPLTVIWRVLLLAWKKRSHPYPDHPSLLNEYQN--------AKVPHTEKFKCLD 298
            ++P GSPLT I++V++ A++K S   P+  SLL E  +         K+ HT+  K  D
Sbjct: 237 LQRPGGSPLTRIFQVIVAAFRKISVKVPEDKSLLFETADDESNIKGSRKLVHTDNLKFFD 296

Query: 299 KAAIIEDNAVANENKNNSWIVSTVTEVEEVKMVLKLLPIWATCILFWTVYSQMTTFTVEQ 358
           KAA+   +    + + N W + +VT+VEE+K ++ LLP+WAT I+F TVYSQM+T  V Q
Sbjct: 297 KAAVESQSDSIKDGEVNPWRLCSVTQVEELKSIITLLPVWATGIVFATVYSQMSTMFVLQ 356

Query: 359 ATFMNRKIG-SFTVPSGSLSAFLFITILLFTSLNEKVFVPLARKITHSIQGMTSLQRVGT 417
              M++ +G +F +PS SLS F  +++L +T + ++  +PLARK T + +G T LQR+G 
Sbjct: 357 GNTMDQHMGKNFEIPSASLSLFDTVSVLFWTPVYDQFIIPLARKFTRNERGFTQLQRMGI 416

Query: 418 GLIFSVIAMIVSAVIEQQR------RETSVQKHIQISAFWLVPQYFLVGAGEAFVYVGQL 471
           GL+ S+ AMI + V+E  R           QK I +S FW +PQY L+G  E F ++GQL
Sbjct: 417 GLVVSIFAMITAGVLEVVRLDYVKTHNAYDQKQIHMSIFWQIPQYLLIGCAEVFTFIGQL 476

Query: 472 EFFIREGPERMKSMSTGLFLSAISMGMFVSSMLVSIVDKITNKH----WLRSNLNKGKLN 527
           EFF  + P+ M+S+ + L L+ +++G ++S++LV++V KIT K+    W+  NLN+G L+
Sbjct: 477 EFFYDQAPDAMRSLCSALSLTTVALGNYLSTVLVTVVMKITKKNGKPGWIPDNLNRGHLD 536

Query: 528 NFYWLLAVLGLLNFMVFLFFAMKHQY 553
            F++LLA L  LNF+V+L+ + +++Y
Sbjct: 537 YFFYLLATLSFLNFLVYLWISKRYKY 562

Peptide transporter. Mediates the transport of di- and tripeptides. High affinity transporter with low selectivity. No transport of amino acids.

Arabidopsis thaliana (taxid: 3702)

>sp|P46032|PTR2_ARATH Peptide transporter PTR2 OS=Arabidopsis thaliana GN=PTR2 PE=1 SV=1

 Score =  431 bits (1108), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 227/559 (40%), Positives = 341/559 (61%), Gaps = 26/559 (4%)

Query: 14  ENVVDFRGNPVDRSKTGGWLAAGLILGTELSERICAMGISMNLVTYLVGDLHLSSAKSAT 73
           +  VDF GNP  + KTG W A   ILG E  ER+   GI+ NL+TYL   LH  +  +AT
Sbjct: 27  DGSVDFNGNPPLKEKTGNWKACPFILGNECCERLAYYGIAGNLITYLTTKLHQGNVSAAT 86

Query: 74  IVTNFMGTLNLLGLLGGFLADAKLGRYLTVAIFASVTALVVGLLTSATSIPSMRPPQC-D 132
            VT + GT  L  L+G  LADA  GRY T+A F+ +  + +  LT + S+P+++P +C  
Sbjct: 87  NVTTWQGTCYLTPLIGAVLADAYWGRYWTIACFSGIYFIGMSALTLSASVPALKPAECIG 146

Query: 133 DYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKAMIFF 192
           D+      C  A   Q AM +  LY IALG GGIK  VS FG+DQFD +D +E      F
Sbjct: 147 DF------CPSATPAQYAMFFGGLYLIALGTGGIKPCVSSFGADQFDDTDSRERVRKASF 200

Query: 193 FNRFYFAISIGSLFAVIVLVYVQDNVGRGWGYGISAGTMVVAAAILLIGTPWYRFKKPRG 252
           FN FYF+I+IG+L +  +LV++Q+N G G G+GI    M +A A    GTP YRF+KP G
Sbjct: 201 FNWFYFSINIGALVSSSLLVWIQENRGWGLGFGIPTVFMGLAIASFFFGTPLYRFQKPGG 260

Query: 253 SPLTVIWRVLLLAWKKRSHPYPDHPSLLNEYQNA--------KVPHTEKFKCLDKAAIIE 304
           SP+T I +V++ +++K S   P+  +LL E Q+         K+ HT+  + LDKAA+I 
Sbjct: 261 SPITRISQVVVASFRKSSVKVPEDATLLYETQDKNSAIAGSRKIEHTDDCQYLDKAAVIS 320

Query: 305 DNAVANENKNNSWIVSTVTEVEEVKMVLKLLPIWATCILFWTVYSQMTTFTVEQATFMNR 364
           +    + + +NSW + TVT+VEE+K+++++ PIWA+ I+F  VY+QM+T  V+Q   MN 
Sbjct: 321 EEESKSGDYSNSWRLCTVTQVEELKILIRMFPIWASGIIFSAVYAQMSTMFVQQGRAMNC 380

Query: 365 KIGSFTVPSGSLSAFLFITILLFTSLNEKVFVPLARKITHSIQGMTSLQRVGTGLIFSVI 424
           KIGSF +P  +L  F   +++++  L ++  VPLARK T   +G T +QR+G GL  SV+
Sbjct: 381 KIGSFQLPPAALGTFDTASVIIWVPLYDRFIVPLARKFTGVDKGFTEIQRMGIGLFVSVL 440

Query: 425 AMIVSAVIEQQRRETSVQ-------KHIQISAFWLVPQYFLVGAGEAFVYVGQLEFFIRE 477
            M  +A++E  R   +           + IS  W +PQYF++GA E F ++GQLEFF  +
Sbjct: 441 CMAAAAIVEIIRLHMANDLGLVESGAPVPISVLWQIPQYFILGAAEVFYFIGQLEFFYDQ 500

Query: 478 GPERMKSMSTGLFLSAISMGMFVSSMLVSIVDKITNKH----WLRSNLNKGKLNNFYWLL 533
            P+ M+S+ + L L   ++G ++SS+++++V   T ++    W+  NLN G L+ F+WLL
Sbjct: 501 SPDAMRSLCSALALLTNALGNYLSSLILTLVTYFTTRNGQEGWISDNLNSGHLDYFFWLL 560

Query: 534 AVLGLLNFMVFLFFAMKHQ 552
           A L L+N  V+ F A +++
Sbjct: 561 AGLSLVNMAVYFFSAARYK 579

Peptide transporter. Mediates the transport of di- and tripeptides. High affinity, low capacity transporter. Can also transport histidine.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LFB8|PTR5_ARATH Peptide transporter PTR5 OS=Arabidopsis thaliana GN=PTR5 PE=2 SV=1

 Score =  420 bits (1079), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 227/560 (40%), Positives = 339/560 (60%), Gaps = 28/560 (5%)

Query: 14  ENVVDFRGNPVDRSKTGGWLAAGLILGTELSERICAMGISMNLVTYLVGDLHLSSAKSAT 73
           +  +D    P +++KTG W A   ILGTE  ER+   G+S NL+ YL   +++ +  ++ 
Sbjct: 11  DGTLDIHKKPANKNKTGTWKACRFILGTECCERLAYYGMSTNLINYLEKQMNMENVSASK 70

Query: 74  IVTNFMGTLNLLGLLGGFLADAKLGRYLTVAIFASVTALVVGLLTSATSIPSMRPPQCDD 133
            V+N+ GT     L+G F+ADA LGRY T+A F  +    + LLT + S+P + P  C  
Sbjct: 71  SVSNWSGTCYATPLIGAFIADAYLGRYWTIASFVVIYIAGMTLLTISASVPGLTP-TCSG 129

Query: 134 YRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKAMIFFF 193
                 +   A   Q A+ + ALY IALG GGIK  VS FG+DQFD +D KE+++   FF
Sbjct: 130 ------ETCHATAGQTAITFIALYLIALGTGGIKPCVSSFGADQFDDTDEKEKESKSSFF 183

Query: 194 NRFYFAISIGSLFAVIVLVYVQDNVGRGWGYGISAGTMVVAAAILLIGTPWYRFKKPRGS 253
           N FYF I++G++ A  VLV++Q NVG GWG G+    M +A      G+ +YR +KP GS
Sbjct: 184 NWFYFVINVGAMIASSVLVWIQMNVGWGWGLGVPTVAMAIAVVFFFAGSNFYRLQKPGGS 243

Query: 254 PLTVIWRVLLLAWKKRSHPYPDHPSLLNEYQNA--------KVPHTEKFKCLDKAAIIED 305
           PLT + +V++ + +K     P+  SLL E Q+A        K+ HT+     DKAA+  +
Sbjct: 244 PLTRMLQVIVASCRKSKVKIPEDESLLYENQDAESSIIGSRKLEHTKILTFFDKAAVETE 303

Query: 306 NAVANENKNNSWIVSTVTEVEEVKMVLKLLPIWATCILFWTVYSQMTTFTVEQATFMNRK 365
           +      K++SW + TVT+VEE+K +++LLPIWAT I+F +VYSQM T  V Q   +++ 
Sbjct: 304 SDNKGAAKSSSWKLCTVTQVEELKALIRLLPIWATGIVFASVYSQMGTVFVLQGNTLDQH 363

Query: 366 IG-SFTVPSGSLSAFLFITILLFTSLNEKVFVPLARKITHSIQGMTSLQRVGTGLIFSVI 424
           +G +F +PS SLS F  +++L +  + +K+ VP ARK T   +G T LQR+G GL+ S+ 
Sbjct: 364 MGPNFKIPSASLSLFDTLSVLFWAPVYDKLIVPFARKYTGHERGFTQLQRIGIGLVISIF 423

Query: 425 AMIVSAVIEQQRRETSVQKH-------IQISAFWLVPQYFLVGAGEAFVYVGQLEFFIRE 477
           +M+ + ++E  R    VQ H       I ++ FW VPQYFLVG  E F ++GQLEFF  +
Sbjct: 424 SMVSAGILEVARLN-YVQTHNLYNEETIPMTIFWQVPQYFLVGCAEVFTFIGQLEFFYDQ 482

Query: 478 GPERMKSMSTGLFLSAISMGMFVSSMLVSIVDKITNK----HWLRSNLNKGKLNNFYWLL 533
            P+ M+S+ + L L+AI+ G ++S+ LV++V K+T       W+  NLN G L+ F+WLL
Sbjct: 483 APDAMRSLCSALSLTAIAFGNYLSTFLVTLVTKVTRSGGRPGWIAKNLNNGHLDYFFWLL 542

Query: 534 AVLGLLNFMVFLFFAMKHQY 553
           A L  LNF+V+L+ A  + Y
Sbjct: 543 AGLSFLNFLVYLWIAKWYTY 562

Peptide transporter. Mediates the transport of di- and tripeptides. High affinity transporter. Involved in the uptake of peptides during pollen germination and tube growth.

Arabidopsis thaliana (taxid: 3702)

>sp|Q93Z20|PTR17_ARATH Probable peptide/nitrate transporter At1g62200 OS=Arabidopsis thaliana GN=At1g62200 PE=2 SV=1

 Score =  405 bits (1040), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 217/557 (38%), Positives = 332/557 (59%), Gaps = 16/557 (2%)

Query: 8   GEKDEAEN-VVDFRGNPVDRSKTGGWLAAGLILGTELSERICAMGISMNLVTYLVGDLHL 66
           G    AE+  +D  GNP  + KTG W A   ILG E  ER+   GI+ NL+TY   +LH 
Sbjct: 31  GLSSTAEDGSIDIYGNPPSKKKTGNWKACPFILGNECCERLAYYGIAKNLITYYTSELHE 90

Query: 67  SSAKSATIVTNFMGTLNLLGLLGGFLADAKLGRYLTVAIFASVTALVVGLLTSATSIPSM 126
           S+  +A+ V  + GT  +  L+G  +AD+  GRY T+A F+++  + + LLT + S+P +
Sbjct: 91  SNVSAASDVMIWQGTCYITPLIGAVIADSYWGRYWTIASFSAIYFIGMALLTLSASLPVL 150

Query: 127 RPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEE 186
           +P            C  A   Q A+ +  LY IALG GGIK  VS FG+DQFD +DP+E 
Sbjct: 151 KPAA--CAGVAAALCSPATTVQYAVFFTGLYLIALGTGGIKPCVSSFGADQFDDTDPRER 208

Query: 187 KAMIFFFNRFYFAISIGSLFAVIVLVYVQDNVGRGWGYGISAGTMVVAAAILLIGTPWYR 246
                FFN FYF+I+IGS  +  +LV+VQ+NVG G G+ I    M V+ A   IGTP YR
Sbjct: 209 VRKASFFNWFYFSINIGSFISSTLLVWVQENVGWGLGFLIPTVFMGVSIASFFIGTPLYR 268

Query: 247 FKKPRGSPLTVIWRVLLLAWKKRSHPYPDHPSLLNEYQ--------NAKVPHTEKFKCLD 298
           F+KP GSP+T + +VL+ A++K     P+  S L E +        + K+ HT+ +K LD
Sbjct: 269 FQKPGGSPITRVCQVLVAAYRKLKLNLPEDISFLYETREKNSMIAGSRKIQHTDGYKFLD 328

Query: 299 KAAIIEDNAVANENKNNSWIVSTVTEVEEVKMVLKLLPIWATCILFWTVYSQMTTFTVEQ 358
           KAA+I +    +   +N W + TVT+VEEVK ++++ PIWA+ I++  +YSQ++T  V+Q
Sbjct: 329 KAAVISEYESKSGAFSNPWKLCTVTQVEEVKTLIRMFPIWASGIVYSVLYSQISTLFVQQ 388

Query: 359 ATFMNRKIGSFTVPSGSLSAFLFITILLFTSLNEKVFVPLARKITHSIQGMTSLQRVGTG 418
              MNR I SF +P  S   F  + +L+   + ++  VP  R+ T   +G+T LQR+G G
Sbjct: 389 GRSMNRIIRSFEIPPASFGVFDTLIVLISIPIYDRFLVPFVRRFTGIPKGLTDLQRMGIG 448

Query: 419 LIFSVIAMIVSAVIEQQRRETSVQKHIQISAFWLVPQYFLVGAGEAFVYVGQLEFFIREG 478
           L  SV+++  +A++E  R + + Q  + +S FW +PQY L+G  E F ++G++EFF  E 
Sbjct: 449 LFLSVLSIAAAAIVETVRLQLA-QDFVAMSIFWQIPQYILMGIAEVFFFIGRVEFFYDES 507

Query: 479 PERMKSMSTGLFLSAISMGMFVSSMLVSIVDKIT----NKHWLRSNLNKGKLNNFYWLLA 534
           P+ M+S+ + L L   ++G ++SS+++++V   T       W+  +LNKG L+ F+WLL 
Sbjct: 508 PDAMRSVCSALALLNTAVGSYLSSLILTLVAYFTALGGKDGWVPDDLNKGHLDYFFWLLV 567

Query: 535 VLGLLNFMVFLFFAMKH 551
            LGL+N  V+    +KH
Sbjct: 568 SLGLVNIPVYALICVKH 584

Arabidopsis thaliana (taxid: 3702)

>sp|Q93VV5|PTR16_ARATH Probable peptide/nitrate transporter At1g59740 OS=Arabidopsis thaliana GN=At1g59740 PE=2 SV=1

 Score =  388 bits (997), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 219/571 (38%), Positives = 338/571 (59%), Gaps = 25/571 (4%)

Query: 14  ENVVDFRGNPVDRSKTGGWLAAGLILGTELSERICAMGISMNLVTYLVGDLHLSSAKSAT 73
           E  VD+RG P + +K GG  AA  +LG +  E +    +  NL+TY++ ++H   +K+A 
Sbjct: 27  EESVDWRGRPSNPNKHGGMRAALFVLGLQAFEIMGIAAVGNNLITYVINEMHFPLSKAAN 86

Query: 74  IVTNFMGTLNLLGLLGGFLADAKLGRYLTVAIFASVTALVVGLLTSATSIPSMRPPQCDD 133
           IVTNF+GT+ +  LLGG+L+DA LG + T+ IF  V      LL+    +P ++PP+C+ 
Sbjct: 87  IVTNFVGTIFIFALLGGYLSDAFLGSFWTIIIFGFVELSGFILLSVQAHLPQLKPPKCNP 146

Query: 134 YRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKAMIFFF 193
              +   C EA G +  + + ALY +ALG G +K N+   G+DQF  S PK+ K +  +F
Sbjct: 147 LIDQ--TCEEAKGFKAMIFFMALYLVALGSGCVKPNMIAHGADQFSQSHPKQSKRLSSYF 204

Query: 194 NRFYFAISIGSLFAVIVLVYVQDNVGRGWGYGISAGTMVVAAAILLIGTPWYRFKKPRGS 253
           N  YFA S+G L A+ +LV+VQ + G   G+G+SA  M +    L+ GT ++R K+PR S
Sbjct: 205 NAAYFAFSMGELIALTLLVWVQTHSGMDIGFGVSAAAMTMGIISLVSGTMYFRNKRPRRS 264

Query: 254 PLTVIWRVLLLAWKKRSHPYPDHPSLL--------NEYQNAKVPHTEKFKCLDKAAI-IE 304
             T I  V++ A  KR    P  P +L        +   ++ +PHT +F+ LDKA I I+
Sbjct: 265 IFTPIAHVIVAAILKRKLASPSDPRMLHGDHHVANDVVPSSTLPHTPRFRFLDKACIKIQ 324

Query: 305 DNAVANENKNNSWIVSTVTEVEEVKMVLKLLPIWATCILFWTVYSQMTTFTVEQATFMNR 364
           D       K + W + TVT+VE+VK ++ L+PI+A+ I+F T+ +Q+ TF+V+Q + MN 
Sbjct: 325 DT----NTKESPWRLCTVTQVEQVKTLISLVPIFASTIVFNTILAQLQTFSVQQGSSMNT 380

Query: 365 KIG-SFTVPSGSLSAFLFITILLFTSLNEKVFVPLARKITHSIQGMTSLQRVGTGLIFSV 423
           ++  SF +P  SL A  +I ++    L +   VP ARK+T    G+  L R+G GL  S 
Sbjct: 381 RLSNSFHIPPASLQAIPYIMLIFLVPLYDSFLVPFARKLTGHNSGIPPLTRIGIGLFLST 440

Query: 424 IAMIVSAVIEQQRRETSVQKHIQISAFWLVPQYFLVGAGEAFVYVGQLEFFIREGPERMK 483
            +M+ +A++E++RR++SV     +S FW+ PQ+ + G  E F  VG +EFF ++  + M+
Sbjct: 441 FSMVSAAMLEKKRRDSSVLDGRILSIFWITPQFLIFGISEMFTAVGLIEFFYKQSAKGME 500

Query: 484 SMSTGLFLSAISMGMFVSSMLVSIVDKIT-----NKHWLRSN-LNKGKLNNFYWLLAVLG 537
           S    L   + S G + SS+LVS+V+KIT     +K WL  N LNK +L+ FYWLLAVL 
Sbjct: 501 SFLMALTYCSYSFGFYFSSVLVSVVNKITSTSVDSKGWLGENDLNKDRLDLFYWLLAVLS 560

Query: 538 LLNFMVFLFFA---MKHQYNVQHRVKGDKEL 565
           LLNF+ +LF++   +K        V GD+ +
Sbjct: 561 LLNFLSYLFWSRWNIKSSRRNNTNVVGDENI 591

Arabidopsis thaliana (taxid: 3702)

>sp|Q56XQ6|PTR15_ARATH Probable peptide/nitrate transporter At1g33440 OS=Arabidopsis thaliana GN=At1g33440 PE=2 SV=1

 Score =  375 bits (964), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 215/584 (36%), Positives = 345/584 (59%), Gaps = 25/584 (4%)

Query: 7   HGEKDEAENV-VDFRGNPVDRSKTGGWLAAGLILGTELSERICAMGISMNLVTYLVGDLH 65
           H  ++  +++ VDFRG P   SK GG  AA  +LG +  E +    +  NL+TY+  ++H
Sbjct: 16  HTSEESLDDLCVDFRGRPCRPSKHGGTRAALFVLGFQAFEMMAIAAVGNNLITYVFNEMH 75

Query: 66  LSSAKSATIVTNFMGTLNLLGLLGGFLADAKLGRYLTVAIFASVTALVVGLLTSATSIPS 125
              +KSA +VTNF+GT+ LL LLGGFL+D+ LG + T+ +F  +      LL+    +P 
Sbjct: 76  FPLSKSANLVTNFIGTVFLLSLLGGFLSDSYLGSFRTMLVFGVIEISGFILLSVQAHLPE 135

Query: 126 MRPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKE 185
           +RPP+C+      H C+EANG + A LY AL  +ALG G +K N+   G++QF   D ++
Sbjct: 136 LRPPECNMKSTTIH-CVEANGYKAATLYTALCLVALGSGCLKPNIISHGANQFQRKDLRK 194

Query: 186 EKAMIFFFNRFYFAISIGSLFAVIVLVYVQDNVGRGWGYGISAGTMVVAAAILLIGTPWY 245
             +   FFN  YFA S+G L A+ +LV+VQ + G   G+G+SA  M      L+ GT +Y
Sbjct: 195 LSS---FFNAAYFAFSMGQLIALTLLVWVQTHSGMDVGFGVSAAVMAAGMISLVAGTSFY 251

Query: 246 RFKKPRGSPLTVIWRVLLLAWKKRSHPYPDHPSLLNEYQNAKVP-----HTEKFKCLDKA 300
           R K P GS  T I +V + A  KR    P +P+++++     V      H+ KF+ LDKA
Sbjct: 252 RNKPPSGSIFTPIAQVFVAAITKRKQICPSNPNMVHQPSTDLVRVKPLLHSNKFRFLDKA 311

Query: 301 AIIEDNAVANENKNNSWIVSTVTEVEEVKMVLKLLPIWATCILFWTVYSQMTTFTVEQAT 360
            I        +   + W + T+ +V +VK++L ++PI+A  I+F T+ +Q+ TF+V+Q +
Sbjct: 312 CI----KTQGKAMESPWRLCTIEQVHQVKILLSVIPIFACTIIFNTILAQLQTFSVQQGS 367

Query: 361 FMNRKI-GSFTVPSGSLSAFLFITILLFTSLNEKVFVPLARKITHSIQGMTSLQRVGTGL 419
            MN  I  +F +P  SL A  +I ++ F  L E  FVPLARK+T +  G++ LQR+GTGL
Sbjct: 368 SMNTHITKTFQIPPASLQAIPYIILIFFVPLYETFFVPLARKLTGNDSGISPLQRIGTGL 427

Query: 420 IFSVIAMIVSAVIEQQRRETSVQKHIQISAFWLVPQYFLVGAGEAFVYVGQLEFFIREGP 479
             +  +M+ +A++E++RRE+ +++++ +S FW+ PQ+ + G  E F  VG +EFF ++  
Sbjct: 428 FLATFSMVAAALVEKKRRESFLEQNVMLSIFWIAPQFLIFGLSEMFTAVGLVEFFYKQSS 487

Query: 480 ERMKSMSTGLFLSAISMGMFVSSMLVSIVDKITNKH-------WLRSN-LNKGKLNNFYW 531
           + M+S  T +   + S G ++SS+LVS V+++T+ +       WL  N LNK +L++FYW
Sbjct: 488 QSMQSFLTAMTYCSYSFGFYLSSVLVSTVNRVTSSNGSGTKEGWLGDNDLNKDRLDHFYW 547

Query: 532 LLAVLGLLNFMVFLFFAMKHQYN--VQHRVKGDKELENFNDGKV 573
           LLA L  +NF  +LF++  +  +    H       LE   +G++
Sbjct: 548 LLASLSFINFFNYLFWSRWYSCDPSATHHSAEVNSLEALENGEI 591

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FNL7|PTR3_ARATH Peptide transporter PTR3-A OS=Arabidopsis thaliana GN=PTR3-A PE=2 SV=1

 Score =  372 bits (956), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 209/551 (37%), Positives = 330/551 (59%), Gaps = 29/551 (5%)

Query: 4   VASHGEKDEAENVVDFRGNPVDRSKTGGWLAAGLILGTELSERICAMGISMNLVTYLVGD 63
           V   G+    +  VD +GNPV RS  G W A   ++  E+ ER+   GIS NL  Y+   
Sbjct: 3   VEEVGDDYTKDGTVDLQGNPVRRSIRGRWKACSFVVVYEVFERMAYYGISSNLFIYMTTK 62

Query: 64  LHLSSAKSATIVTNFMGTLNLLGLLGGFLADAKLGRYLTVAIFASVTALVVGLLTSATSI 123
           LH  + KS+  VTN++GT  L  +LG ++ DA LGRY+T  I  ++    + +LT + +I
Sbjct: 63  LHQGTVKSSNNVTNWVGTSWLTPILGAYVGDALLGRYITFVISCAIYFSGMMVLTLSVTI 122

Query: 124 PSMRPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDP 183
           P ++PP+C     ++  C +A+  QLA+ + ALYT+A+G GG K N+S  G+DQFD  DP
Sbjct: 123 PGIKPPECSTTNVEN--CEKASVLQLAVFFGALYTLAIGTGGTKPNISTIGADQFDVFDP 180

Query: 184 KEEKAMIFFFNRFYFAISIGSLFAVIVLVYVQDNVGRGWGYGISAGTMVVAAAILLIGTP 243
           KE+   + FFN + F+I  G+LFA  VLVYVQDNVG   GYG+    + ++  I L+GTP
Sbjct: 181 KEKTQKLSFFNWWMFSIFFGTLFANTVLVYVQDNVGWTLGYGLPTLGLAISITIFLLGTP 240

Query: 244 WYRFKKPRGSPLTVIWRVLLLAWKKRSHP-------YPDHPSLLNEYQNAKVPH-TEKFK 295
           +YR K P GSP T + RV++ +++K + P       + + PSL  E + A   H T   +
Sbjct: 241 FYRHKLPTGSPFTKMARVIVASFRKANAPMTHDITSFHELPSLEYERKGAFPIHPTPSLR 300

Query: 296 CLDKAAIIEDNAVANENKNNSWIVSTVTEVEEVKMVLKLLPIWATCILFWTVYSQMTTFT 355
            LD+A++           N+ W + T TEVEE K +L++LP+     +   + +Q+ T  
Sbjct: 301 FLDRASL-------KTGTNHKWNLCTTTEVEETKQMLRMLPVLFITFVPSMMLAQINTLF 353

Query: 356 VEQATFMNRKI-GSFTVPSGSLSAFLFITILLFTSLNEKVFVPLARKITHSIQGMTSLQR 414
           V+Q T ++RK+ GSF++P  SLS F+ +++L+   L ++VFV + RK T + +G+T LQR
Sbjct: 354 VKQGTTLDRKVTGSFSIPPASLSGFVTLSMLISIVLYDRVFVKITRKFTGNPRGITLLQR 413

Query: 415 VGTGLIFSVIAMIVSAVIEQQRRETSVQK--------HIQISAFWLVPQYFLVGAGEAFV 466
           +G GLIF ++ MIV++V E+ R + +            + ++ F L+PQ+ L+G  ++F+
Sbjct: 414 MGIGLIFHILIMIVASVTERYRLKVAADHGLIHQTGVKLPLTIFALLPQFVLMGMADSFL 473

Query: 467 YVGQLEFFIREGPERMKSMSTGLFLSAISMGMFVSSMLVSIVDKITNKH---WLRSNLNK 523
            V +LEFF  + PE MKS+ T    +++++G F+SS L+S V +IT K    W+ +NLN+
Sbjct: 474 EVAKLEFFYDQAPESMKSLGTSYSTTSLAIGNFMSSFLLSTVSEITKKRGRGWILNNLNE 533

Query: 524 GKLNNFYWLLA 534
            +L+ +Y   A
Sbjct: 534 SRLDYYYLFFA 544

Peptide transporter involved in stress tolerance in seeds during germination and in defense against virulent bacterial pathogens.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	573
255568703	589	oligopeptide transporter, putative [Rici	0.994	0.967	0.796	0.0
225447121	594	PREDICTED: nitrate transporter 1.3-like	0.996	0.961	0.764	0.0
297739204	1179	unnamed protein product [Vitis vinifera]	0.996	0.484	0.764	0.0
224131668	537	nitrate transporter, H+/oligopeptide sym	0.935	0.998	0.812	0.0
224064896	549	predicted protein [Populus trichocarpa]	0.938	0.979	0.770	0.0
356554474	587	PREDICTED: nitrate transporter 1.3-like	0.998	0.974	0.748	0.0
402810584	589	nitrate transporter [Cucumis sativus]	0.991	0.964	0.759	0.0
356501284	588	PREDICTED: nitrate transporter 1.3-like	1.0	0.974	0.741	0.0
449468472	771	PREDICTED: nitrate transporter 1.3-like	0.989	0.735	0.759	0.0
357493285	588	Nitrate transporter [Medicago truncatula	1.0	0.974	0.737	0.0

>gi|255568703|ref|XP_002525323.1| oligopeptide transporter, putative [Ricinus communis] gi|223535382|gb|EEF37056.1| oligopeptide transporter, putative [Ricinus communis]

 Score =  933 bits (2411), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 459/576 (79%), Positives = 513/576 (89%), Gaps = 6/576 (1%)

Query: 1   MVLVASHGEK--DEAENVVDFRGNPVDRSKTGGWLAAGLILGTELSERICAMGISMNLVT 58
           MVLV S G+K   + E  VDF GNPVD+SKTGGWLAAGLILGTELSERIC MGISMNLVT
Sbjct: 1   MVLVTSSGDKVAMQHETAVDFHGNPVDKSKTGGWLAAGLILGTELSERICVMGISMNLVT 60

Query: 59  YLVGDLHLSSAKSATIVTNFMGTLNLLGLLGGFLADAKLGRYLTVAIFASVTALVVGLLT 118
           YLVGDLH+SSAKSATIVTNFMGTLNLLGLLGGFLADAK GRYLTVAIFAS+TA+ V +LT
Sbjct: 61  YLVGDLHISSAKSATIVTNFMGTLNLLGLLGGFLADAKFGRYLTVAIFASITAVGVIMLT 120

Query: 119 SATSIPSMRPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQF 178
           SAT+I SMRPP CDDYRR+HHQCIEANG+QLA+LYAALYTIALGGGGIKSNVSGFGSDQF
Sbjct: 121 SATTISSMRPPPCDDYRRQHHQCIEANGQQLALLYAALYTIALGGGGIKSNVSGFGSDQF 180

Query: 179 DTSDPKEEKAMIFFFNRFYFAISIGSLFAVIVLVYVQDNVGRGWGYGISAGTMVVAAAIL 238
           D +DPKEEKAMIFFFNRFYF ISIGSLFAVIVLVYVQDNVGRGWGYGISAGTM +A AIL
Sbjct: 181 DATDPKEEKAMIFFFNRFYFCISIGSLFAVIVLVYVQDNVGRGWGYGISAGTMAIAVAIL 240

Query: 239 LIGTPWYRFKKPRGSPLTVIWRVLLLAWKKRSHPYPDHPSLLNEYQNAKVPHTEKFKCLD 298
           L GTPWYRFKKP+GSPLTVIWRV  LAWKKR HP+P HPS LN+YQN++V HTEKFKC+D
Sbjct: 241 LCGTPWYRFKKPQGSPLTVIWRVFFLAWKKRGHPHPSHPSFLNDYQNSRVLHTEKFKCID 300

Query: 299 KAAIIEDNAVANENKNNSWIVSTVTEVEEVKMVLKLLPIWATCILFWTVYSQMTTFTVEQ 358
           KAAI++ +A A+ NKNN WIVSTV EVEEVKM+LKL+PIW+TCILFWT YSQMTTFT+EQ
Sbjct: 301 KAAIMDGDASADGNKNNPWIVSTVMEVEEVKMLLKLIPIWSTCILFWTAYSQMTTFTIEQ 360

Query: 359 ATFMNRKIGSFTVPSGSLSAFLFITILLFTSLNEKVFVPLARKITHSIQGMTSLQRVGTG 418
           ATFM+RK+GSFT+P+GS+S FLFITILLFTSLNE++FVP+ARK+T++ QG TSLQR+G G
Sbjct: 361 ATFMDRKVGSFTIPAGSMSTFLFITILLFTSLNERLFVPMARKLTNNSQGFTSLQRIGIG 420

Query: 419 LIFSVIAMIVSAVIEQQRRETSVQKHIQISAFWLVPQYFLVGAGEAFVYVGQLEFFIREG 478
           LIFSV+AM+ +A+IE++RRE +VQ   QISAFWLVPQYFLVGAGEAF YVGQLEFFIRE 
Sbjct: 421 LIFSVVAMVAAALIEKERREFAVQYGTQISAFWLVPQYFLVGAGEAFAYVGQLEFFIREA 480

Query: 479 PERMKSMSTGLFLSAISMGMFVSSMLVSIVDKITNKHWLRSNLNKGKLNNFYWLLAVLGL 538
           PERMKSMSTGLFLS +SMG FVSS+LVSIVDK+T K WLRSNLNKG+L+NFYWLLA LG 
Sbjct: 481 PERMKSMSTGLFLSTLSMGFFVSSLLVSIVDKVTKKIWLRSNLNKGELDNFYWLLAALGS 540

Query: 539 LNFMVFLFFAMKHQYNVQHRVK----GDKELENFND 570
           LNF  FL FAM+HQY V    K    G+KEL+  ND
Sbjct: 541 LNFFAFLAFAMRHQYKVLQYTKPFDSGEKELKTPND 576

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225447121|ref|XP_002274227.1| PREDICTED: nitrate transporter 1.3-like [Vitis vinifera]

 Score =  931 bits (2405), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 441/577 (76%), Positives = 509/577 (88%), Gaps = 6/577 (1%)

Query: 1   MVLVASHGEKDEAEN-VVDFRGNPVDRSKTGGWLAAGLILGTELSERICAMGISMNLVTY 59
           MVLV +H  KD  ++  +DFRGNPVD+++TGGWL AGLILGTE +ER+C MGISMNLVTY
Sbjct: 1   MVLVDAHAGKDGTDDGALDFRGNPVDKTRTGGWLGAGLILGTEFAERVCVMGISMNLVTY 60

Query: 60  LVGDLHLSSAKSATIVTNFMGTLNLLGLLGGFLADAKLGRYLTVAIFASVTALVVGLLTS 119
           LV +LH+S+AKSATIVTNFMGTLNL GLL GFLADAKLGRYLTVAIF S+TAL V LLT 
Sbjct: 61  LVQNLHISAAKSATIVTNFMGTLNLCGLLAGFLADAKLGRYLTVAIFGSITALGVILLTV 120

Query: 120 ATSIPSMRPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFD 179
           AT+IPSMRPP C DY R+HHQCIEANG QLAMLYAALYTIALGGGGIKSNVSGFGSDQFD
Sbjct: 121 ATTIPSMRPPPCSDYMRQHHQCIEANGSQLAMLYAALYTIALGGGGIKSNVSGFGSDQFD 180

Query: 180 TSDPKEEKAMIFFFNRFYFAISIGSLFAVIVLVYVQDNVGRGWGYGISAGTMVVAAAILL 239
            SDPKEEKAMIFFFNRFYF +SIGSLFAV VLVY+QDNVGRGWGYGISA TMV+A  ILL
Sbjct: 181 NSDPKEEKAMIFFFNRFYFCVSIGSLFAVTVLVYIQDNVGRGWGYGISAVTMVIAVTILL 240

Query: 240 IGTPWYRFKKPRGSPLTVIWRVLLLAWKKRSHPYPDHPSLLNEYQNAKVPHTEKFKCLDK 299
            GTP+YRFK PRGSPLTVIWRV+ LAW+KR+ PYP HPSLLNEY NAKV HT++F+CLDK
Sbjct: 241 GGTPFYRFKMPRGSPLTVIWRVIFLAWRKRNLPYPSHPSLLNEYHNAKVSHTQRFRCLDK 300

Query: 300 AAIIEDNAVANENKNNSWIVSTVTEVEEVKMVLKLLPIWATCILFWTVYSQMTTFTVEQA 359
           AAI+ED   A+ NK+N WIVSTV +VEEVKMV+KLLPIW+TCILFWTVYSQMTTFT+EQA
Sbjct: 301 AAILEDYYSASGNKDNPWIVSTVNQVEEVKMVIKLLPIWSTCILFWTVYSQMTTFTIEQA 360

Query: 360 TFMNRKIGSFTVPSGSLSAFLFITILLFTSLNEKVFVPLARKITHSIQGMTSLQRVGTGL 419
           TFMNRK+GSF VPSGS S FLFI+ILLFTSLNE++FVP ARK+TH++QG+TSLQRVG GL
Sbjct: 361 TFMNRKLGSFVVPSGSFSVFLFISILLFTSLNERIFVPCARKLTHNVQGVTSLQRVGIGL 420

Query: 420 IFSVIAMIVSAVIEQQRRETSVQKHIQISAFWLVPQYFLVGAGEAFVYVGQLEFFIREGP 479
           IFS++AM+ +A++E+QRRE +VQ    ISAFWLVPQ+FLVGAGEAF YVGQLEFFIRE P
Sbjct: 421 IFSMVAMVTAAIVEKQRREAAVQHKTNISAFWLVPQFFLVGAGEAFAYVGQLEFFIREAP 480

Query: 480 ERMKSMSTGLFLSAISMGMFVSSMLVSIVDKITNKHWLRSNLNKGKLNNFYWLLAVLGLL 539
           +RMKSMSTGLFLS ++MG FVSS+LVS+VDK+TN  WLRSNLN+GKL+NFYW+LAVLG+L
Sbjct: 481 DRMKSMSTGLFLSTLAMGFFVSSLLVSLVDKVTNMRWLRSNLNRGKLDNFYWMLAVLGVL 540

Query: 540 NFMVFLFFAMKHQY-NVQHR---VKGDKELEN-FNDG 571
           NF+ FL FAM+HQY  +Q++   V G+ EL+  +N+G
Sbjct: 541 NFLAFLVFAMRHQYKTLQYKSPDVYGENELKKGWNEG 577

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297739204|emb|CBI28855.3| unnamed protein product [Vitis vinifera]

 Score =  926 bits (2394), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 441/577 (76%), Positives = 509/577 (88%), Gaps = 6/577 (1%)

Query: 1    MVLVASHGEKDEAEN-VVDFRGNPVDRSKTGGWLAAGLILGTELSERICAMGISMNLVTY 59
            MVLV +H  KD  ++  +DFRGNPVD+++TGGWL AGLILGTE +ER+C MGISMNLVTY
Sbjct: 586  MVLVDAHAGKDGTDDGALDFRGNPVDKTRTGGWLGAGLILGTEFAERVCVMGISMNLVTY 645

Query: 60   LVGDLHLSSAKSATIVTNFMGTLNLLGLLGGFLADAKLGRYLTVAIFASVTALVVGLLTS 119
            LV +LH+S+AKSATIVTNFMGTLNL GLL GFLADAKLGRYLTVAIF S+TAL V LLT 
Sbjct: 646  LVQNLHISAAKSATIVTNFMGTLNLCGLLAGFLADAKLGRYLTVAIFGSITALGVILLTV 705

Query: 120  ATSIPSMRPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFD 179
            AT+IPSMRPP C DY R+HHQCIEANG QLAMLYAALYTIALGGGGIKSNVSGFGSDQFD
Sbjct: 706  ATTIPSMRPPPCSDYMRQHHQCIEANGSQLAMLYAALYTIALGGGGIKSNVSGFGSDQFD 765

Query: 180  TSDPKEEKAMIFFFNRFYFAISIGSLFAVIVLVYVQDNVGRGWGYGISAGTMVVAAAILL 239
             SDPKEEKAMIFFFNRFYF +SIGSLFAV VLVY+QDNVGRGWGYGISA TMV+A  ILL
Sbjct: 766  NSDPKEEKAMIFFFNRFYFCVSIGSLFAVTVLVYIQDNVGRGWGYGISAVTMVIAVTILL 825

Query: 240  IGTPWYRFKKPRGSPLTVIWRVLLLAWKKRSHPYPDHPSLLNEYQNAKVPHTEKFKCLDK 299
             GTP+YRFK PRGSPLTVIWRV+ LAW+KR+ PYP HPSLLNEY NAKV HT++F+CLDK
Sbjct: 826  GGTPFYRFKMPRGSPLTVIWRVIFLAWRKRNLPYPSHPSLLNEYHNAKVSHTQRFRCLDK 885

Query: 300  AAIIEDNAVANENKNNSWIVSTVTEVEEVKMVLKLLPIWATCILFWTVYSQMTTFTVEQA 359
            AAI+ED   A+ NK+N WIVSTV +VEEVKMV+KLLPIW+TCILFWTVYSQMTTFT+EQA
Sbjct: 886  AAILEDYYSASGNKDNPWIVSTVNQVEEVKMVIKLLPIWSTCILFWTVYSQMTTFTIEQA 945

Query: 360  TFMNRKIGSFTVPSGSLSAFLFITILLFTSLNEKVFVPLARKITHSIQGMTSLQRVGTGL 419
            TFMNRK+GSF VPSGS S FLFI+ILLFTSLNE++FVP ARK+TH++QG+TSLQRVG GL
Sbjct: 946  TFMNRKLGSFVVPSGSFSVFLFISILLFTSLNERIFVPCARKLTHNVQGVTSLQRVGIGL 1005

Query: 420  IFSVIAMIVSAVIEQQRRETSVQKHIQISAFWLVPQYFLVGAGEAFVYVGQLEFFIREGP 479
            IFS++AM+ +A++E+QRRE +VQ    ISAFWLVPQ+FLVGAGEAF YVGQLEFFIRE P
Sbjct: 1006 IFSMVAMVTAAIVEKQRREAAVQHKTNISAFWLVPQFFLVGAGEAFAYVGQLEFFIREAP 1065

Query: 480  ERMKSMSTGLFLSAISMGMFVSSMLVSIVDKITNKHWLRSNLNKGKLNNFYWLLAVLGLL 539
            +RMKSMSTGLFLS ++MG FVSS+LVS+VDK+TN  WLRSNLN+GKL+NFYW+LAVLG+L
Sbjct: 1066 DRMKSMSTGLFLSTLAMGFFVSSLLVSLVDKVTNMRWLRSNLNRGKLDNFYWMLAVLGVL 1125

Query: 540  NFMVFLFFAMKHQYN-VQHR---VKGDKELEN-FNDG 571
            NF+ FL FAM+HQY  +Q++   V G+ EL+  +N+G
Sbjct: 1126 NFLAFLVFAMRHQYKTLQYKSPDVYGENELKKGWNEG 1162

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224131668|ref|XP_002321148.1| nitrate transporter, H+/oligopeptide symporter POT family [Populus trichocarpa] gi|222861921|gb|EEE99463.1| nitrate transporter, H+/oligopeptide symporter POT family [Populus trichocarpa]

 Score =  900 bits (2327), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 437/538 (81%), Positives = 489/538 (90%), Gaps = 2/538 (0%)

Query: 17  VDFRGNPVDRSKTGGWLAAGLILGTELSERICAMGISMNLVTYLVGDLHLSSAKSATIVT 76
           VDFRGNPVD+S+TGGWLAAGLILGTELSERIC MGISMNLVTYLVG+LH+SSAKSATIVT
Sbjct: 2   VDFRGNPVDKSRTGGWLAAGLILGTELSERICVMGISMNLVTYLVGELHISSAKSATIVT 61

Query: 77  NFMGTLNLLGLLGGFLADAKLGRYLTVAIFASVTALVVGLLTSATSIPSMRPPQCDDYRR 136
           NFMGTLNLLGLLGGFLADAKLGRYL VAIFAS+TAL + LLT AT+IP+MRPPQCDDYR+
Sbjct: 62  NFMGTLNLLGLLGGFLADAKLGRYLAVAIFASITALGLSLLTMATTIPTMRPPQCDDYRK 121

Query: 137 KHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKAMIFFFNRF 196
           +H+QCIEA+G QLA+LYAALYT ALGGGGIKSNVSGFGSDQFD +DPKEEKAM FFFNRF
Sbjct: 122 QHYQCIEASGNQLALLYAALYTTALGGGGIKSNVSGFGSDQFDQTDPKEEKAMHFFFNRF 181

Query: 197 YFAISIGSLFAVIVLVYVQDNVGRGWGYGISAGTMVVAAAILLIGTPWYRFKKPRGSPLT 256
           YF ISIGSLFAVIVLVY+QDNVGRGWGYGISAGTMV+A A+LL GTPWYRFKKPRGSPLT
Sbjct: 182 YFCISIGSLFAVIVLVYIQDNVGRGWGYGISAGTMVIAVAVLLCGTPWYRFKKPRGSPLT 241

Query: 257 VIWRVLLLAWKKRSHPYPDHPSLLNEYQNAKVPHTEKFKCLDKAAIIEDNAVANENKNNS 316
            IWRV LLAWKKR HPYP HPSLLN+Y +A VPHTEKFK LDKAAI++  + A   KN+ 
Sbjct: 242 TIWRVSLLAWKKRRHPYPSHPSLLNDYDSATVPHTEKFKYLDKAAIMDPTSSA--QKNDP 299

Query: 317 WIVSTVTEVEEVKMVLKLLPIWATCILFWTVYSQMTTFTVEQATFMNRKIGSFTVPSGSL 376
           WIVSTVTEVEEVKMVLKL+PIW+TCILFWTVYSQMTTFT+EQATFMNRK+GS  +PSGS 
Sbjct: 300 WIVSTVTEVEEVKMVLKLIPIWSTCILFWTVYSQMTTFTIEQATFMNRKVGSLVIPSGSY 359

Query: 377 SAFLFITILLFTSLNEKVFVPLARKITHSIQGMTSLQRVGTGLIFSVIAMIVSAVIEQQR 436
           S FLFITILLFTSLNE++F+PLARK+T + QG+TSLQR+G GL  S++AM+ +A+IE++R
Sbjct: 360 STFLFITILLFTSLNERLFIPLARKLTRNAQGLTSLQRIGIGLFLSILAMVAAAIIEKER 419

Query: 437 RETSVQKHIQISAFWLVPQYFLVGAGEAFVYVGQLEFFIREGPERMKSMSTGLFLSAISM 496
           RET +Q++  ISAFWLVPQYFLVGAGEAFVYVGQLEFFIRE PERMKSMSTGLFLS+ISM
Sbjct: 420 RETVIQQNTMISAFWLVPQYFLVGAGEAFVYVGQLEFFIREAPERMKSMSTGLFLSSISM 479

Query: 497 GMFVSSMLVSIVDKITNKHWLRSNLNKGKLNNFYWLLAVLGLLNFMVFLFFAMKHQYN 554
           G FVSS+LVS+VDK T K WLRSNLNKG+LNNFYW+LAVLGLLN  +FL FA +HQY 
Sbjct: 480 GFFVSSLLVSLVDKATKKIWLRSNLNKGRLNNFYWMLAVLGLLNLFIFLVFAREHQYK 537

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224064896|ref|XP_002301604.1| predicted protein [Populus trichocarpa] gi|222843330|gb|EEE80877.1| predicted protein [Populus trichocarpa]

 Score =  882 bits (2280), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 422/548 (77%), Positives = 474/548 (86%), Gaps = 10/548 (1%)

Query: 17  VDFRGNPVDRSKTGGWLAAGLILGTELSERICAMGISMNLVTYLVGDLHLSSAKSATIVT 76
           VDFRG PVD+S+TGGWLAAGLIL TELSERIC MGISMNLVTYLVG LH+SSAKSA +VT
Sbjct: 2   VDFRGIPVDKSRTGGWLAAGLILVTELSERICVMGISMNLVTYLVGVLHISSAKSANMVT 61

Query: 77  NFMGTLNLLGLLGGFLADAKLGRYLTVAIFASVTALVVGLLTSATSIPSMRPPQCDDYRR 136
           NFMGTLNLLGL GGFLADAKLGRYLTVAIFA +TAL V LLT+AT+IPSMRPP CDDYR+
Sbjct: 62  NFMGTLNLLGLFGGFLADAKLGRYLTVAIFAIITALGVSLLTAATTIPSMRPPPCDDYRK 121

Query: 137 KHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKAMIFFFNRF 196
           ++HQCIE  G QL +LYAALYT+ALGGGGIKSNVSGFGSDQFD +DPKEEK MIFFFNRF
Sbjct: 122 QNHQCIEVKGNQLVLLYAALYTVALGGGGIKSNVSGFGSDQFDQTDPKEEKTMIFFFNRF 181

Query: 197 YFAISIGSLFAVIVLVYVQDNVGRGWGYGISAGTMVVAAAILLIGTPWYRFKKPRGSPLT 256
           YF IS+GSLFAVIVLVYVQDNVGRGWGYGISAGTMV+A A+L+ GTP YRFKKP+GSPLT
Sbjct: 182 YFCISMGSLFAVIVLVYVQDNVGRGWGYGISAGTMVIAVAVLICGTPRYRFKKPQGSPLT 241

Query: 257 VIWRVLLLAWKKRSHPYPDHPSLLNEYQNA-----KVP-----HTEKFKCLDKAAIIEDN 306
           +IWRV LLAWKKR HP+P HPSLLN Y +A      +P     H    +CLDKAAI++D 
Sbjct: 242 IIWRVSLLAWKKRRHPHPSHPSLLNGYDSATYSRRNLPDSISSHVLFIRCLDKAAIMDDP 301

Query: 307 AVANENKNNSWIVSTVTEVEEVKMVLKLLPIWATCILFWTVYSQMTTFTVEQATFMNRKI 366
                 KN+ WIVSTV EVEEVKMVLKL+PIW+TCILFWTVYSQMTTFT+EQATFM+RK+
Sbjct: 302 TSIGAQKNDPWIVSTVMEVEEVKMVLKLIPIWSTCILFWTVYSQMTTFTIEQATFMDRKV 361

Query: 367 GSFTVPSGSLSAFLFITILLFTSLNEKVFVPLARKITHSIQGMTSLQRVGTGLIFSVIAM 426
           GS  +PSGS S FLFITILLFTSLNE++FVPLARK+TH+ QG+TSLQR+G GL  S++AM
Sbjct: 362 GSLVIPSGSYSTFLFITILLFTSLNERLFVPLARKLTHNAQGLTSLQRIGAGLFLSILAM 421

Query: 427 IVSAVIEQQRRETSVQKHIQISAFWLVPQYFLVGAGEAFVYVGQLEFFIREGPERMKSMS 486
           + +A +E++RRET++Q+  +ISAFWLVPQYFLVGAGEAFVYVGQLEFFIRE P RMKSMS
Sbjct: 422 VAAASVEKERRETAIQQSTKISAFWLVPQYFLVGAGEAFVYVGQLEFFIREAPARMKSMS 481

Query: 487 TGLFLSAISMGMFVSSMLVSIVDKITNKHWLRSNLNKGKLNNFYWLLAVLGLLNFMVFLF 546
           TGLFLS ISMG FVSS+LVS+VDK T K WLRSNLNKG+LNNFYWLLAVLG LNF VFL 
Sbjct: 482 TGLFLSTISMGFFVSSLLVSLVDKATKKIWLRSNLNKGRLNNFYWLLAVLGGLNFFVFLA 541

Query: 547 FAMKHQYN 554
           FA  HQY 
Sbjct: 542 FARGHQYK 549

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356554474|ref|XP_003545571.1| PREDICTED: nitrate transporter 1.3-like [Glycine max]

 Score =  859 bits (2219), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 434/580 (74%), Positives = 507/580 (87%), Gaps = 8/580 (1%)

Query: 1   MVLVASHGEKDE-AENV--VDFRGNPVDRSKTGGWLAAGLILGTELSERICAMGISMNLV 57
           MVLVASHGE+++ AE +  VDFRG+PVD++KTGGWLAAGLILGTEL+ERIC MGISMNLV
Sbjct: 1   MVLVASHGEEEKGAEGIAAVDFRGHPVDKTKTGGWLAAGLILGTELAERICVMGISMNLV 60

Query: 58  TYLVGDLHLSSAKSATIVTNFMGTLNLLGLLGGFLADAKLGRYLTVAIFASVTALVVGLL 117
           TYLVG L+L SA SATIVTN MGTLNLLGLLGGF+ADAKLGRY+TVAI A + AL V LL
Sbjct: 61  TYLVGVLNLPSADSATIVTNVMGTLNLLGLLGGFIADAKLGRYVTVAISAIIAALGVCLL 120

Query: 118 TSATSIPSMRPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQ 177
           T AT+IPSMRPP C   R++HH+CI+A+GKQLA+L+AALYT+A+GGGGIKSNVSGFGSDQ
Sbjct: 121 TVATTIPSMRPPVCSSVRKQHHECIQASGKQLALLFAALYTVAVGGGGIKSNVSGFGSDQ 180

Query: 178 FDTSDPKEEKAMIFFFNRFYFAISIGSLFAVIVLVYVQDNVGRGWGYGISAGTMVVAAAI 237
           FDT+DPKEE+ M+FFFNRFYF ISIGSLF+V+VLVYVQDN+GRGWGYGISAGTMV+A A+
Sbjct: 181 FDTTDPKEERRMVFFFNRFYFFISIGSLFSVVVLVYVQDNIGRGWGYGISAGTMVIAVAV 240

Query: 238 LLIGTPWYRFKKPRGSPLTVIWRVLLLAWKKRSHPYPDHPSLLNEYQNAKVPHTEKFKCL 297
           LL GTP+YRFK+P+GSPLTVIWRVL LAWKKRS P P  PS LN Y  AKVPHT+KF+ L
Sbjct: 241 LLCGTPFYRFKRPQGSPLTVIWRVLFLAWKKRSLPDPSQPSFLNGYLEAKVPHTQKFRFL 300

Query: 298 DKAAIIEDNAVANENKNNSWIVSTVTEVEEVKMVLKLLPIWATCILFWTVYSQMTTFTVE 357
           DKAAI+++N    EN+ N WIVSTVT+VEEVKMV+KLLPIW+TCILFWT+YSQM TFT+E
Sbjct: 301 DKAAILDENCSKEENRENPWIVSTVTQVEEVKMVIKLLPIWSTCILFWTIYSQMNTFTIE 360

Query: 358 QATFMNRKIGSFTVPSGSLSAFLFITILLFTSLNEKVFVPLARKITHSIQGMTSLQRVGT 417
           QATFMNRK+GS  VP+GSLSAFL ITILLFTSLNEK+ VPLARK+TH+ QG+TSLQRVG 
Sbjct: 361 QATFMNRKVGSLVVPAGSLSAFLIITILLFTSLNEKLTVPLARKLTHNAQGLTSLQRVGI 420

Query: 418 GLIFSVIAMIVSAVIEQQRRETSVQKHIQISAFWLVPQYFLVGAGEAFVYVGQLEFFIRE 477
           GL+FS +AM V+A++E++RR  +V+ +  ISAFWLVPQ+FLVGAGEAF YVGQLEFFIRE
Sbjct: 421 GLVFSSVAMAVAAIVEKERRANAVKNN-TISAFWLVPQFFLVGAGEAFAYVGQLEFFIRE 479

Query: 478 GPERMKSMSTGLFLSAISMGMFVSSMLVSIVDKITNKHWLRSNLNKGKLNNFYWLLAVLG 537
            PERMKSMSTGLFLS +SMG FVSS+LV+IVDK + K WLRSNLNKG+L+ FYWLLAVLG
Sbjct: 480 APERMKSMSTGLFLSTLSMGYFVSSLLVAIVDKASKKRWLRSNLNKGRLDYFYWLLAVLG 539

Query: 538 LLNFMVFLFFAMKHQYNVQHRVK----GDKELENFNDGKV 573
           LLNF++FL  AM+HQY VQH +K     +KEL + ND KV
Sbjct: 540 LLNFILFLVLAMRHQYKVQHNIKPNDDAEKELVSANDVKV 579

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|402810584|gb|AFR11353.1| nitrate transporter [Cucumis sativus]

 Score =  853 bits (2205), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 436/574 (75%), Positives = 496/574 (86%), Gaps = 6/574 (1%)

Query: 1   MVLVASHGEK-DEAENVVDFRGNPVDRSKTGGWLAAGLILGTELSERICAMGISMNLVTY 59
           MVLV+ HG   +E +  VDF GNPVD+SKTGGWLAAGLILGTELSERIC MGISMNLVTY
Sbjct: 1   MVLVSKHGSGGEEDDTAVDFWGNPVDKSKTGGWLAAGLILGTELSERICVMGISMNLVTY 60

Query: 60  LVGDLHLSSAKSATIVTNFMGTLNLLGLLGGFLADAKLGRYLTVAIFASVTALVVGLLTS 119
           LVGDLHL+SAKSATIVTNF+G LNLLGLLGGFLADAKLGRYLTVAIFAS+TA+ V LLT 
Sbjct: 61  LVGDLHLTSAKSATIVTNFLGALNLLGLLGGFLADAKLGRYLTVAIFASITAVGVILLTL 120

Query: 120 ATSIPSMRPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFD 179
           AT+IP MRPP CDD  R+ HQCIEANG QLAMLYAALYTIALGGGGIKSNVSGFGSDQFD
Sbjct: 121 ATTIPGMRPPHCDDSTRQLHQCIEANGGQLAMLYAALYTIALGGGGIKSNVSGFGSDQFD 180

Query: 180 TSDPKEEKAMIFFFNRFYFAISIGSLFAVIVLVYVQDNVGRGWGYGISAGTMVVAAAILL 239
           T+DPK EKAMIFFFNRFYFAISIGSLFAVIVLVYVQD VGRGWGYGIS GTM VA  +LL
Sbjct: 181 TNDPKGEKAMIFFFNRFYFAISIGSLFAVIVLVYVQDKVGRGWGYGISGGTMAVAVIVLL 240

Query: 240 IGTPWYRFKKPRGSPLTVIWRVLLLAWKKRSHPYPDHPSLLNEYQNAKVPHTEKFKCLDK 299
            GT +YRFKKPRGSPLTVIWRV+LLAWKKRS P+P HPS LN+YQNAKVP+T +FKCLDK
Sbjct: 241 CGTTFYRFKKPRGSPLTVIWRVVLLAWKKRSLPHPAHPSFLNDYQNAKVPYTYRFKCLDK 300

Query: 300 AAIIEDNAVANENKNNSWIVSTVTEVEEVKMVLKLLPIWATCILFWTVYSQMTTFTVEQA 359
           AAI+++   A    NN WIVSTVTEVEEVKMV KL+PIW+T ILFWT+YSQMTTFTVEQA
Sbjct: 301 AAILDE--YATTGPNNPWIVSTVTEVEEVKMVFKLIPIWSTGILFWTIYSQMTTFTVEQA 358

Query: 360 TFMNRKIGSFTVPSGSLSAFLFITILLFTSLNEKVFVPLARKITHSIQGMTSLQRVGTGL 419
           +FM RK+GSF +P GS+SAFLFI ILL TSLNEK+F+P+ARK+TH++QG+TSLQR+G GL
Sbjct: 359 SFMERKVGSFEIPPGSMSAFLFIAILLVTSLNEKLFIPIARKLTHNVQGLTSLQRIGIGL 418

Query: 420 IFSVIAMIVSAVIEQQRRETSVQKHIQISAFWLVPQYFLVGAGEAFVYVGQLEFFIREGP 479
           +FS+  M+ +  +E++R+ ++V +  +ISAFWL+PQ+FLVGAGEAF YVGQLEFFIRE P
Sbjct: 419 VFSIFGMVAAGAVEKERKASAVGQSTRISAFWLIPQFFLVGAGEAFTYVGQLEFFIREAP 478

Query: 480 ERMKSMSTGLFLSAISMGMFVSSMLVSIVDKITNKHWLRSNLNKGKLNNFYWLLAVLGLL 539
           E+MKSMSTGLFLS +SMG FVSS+LV+IVDK+TNK WLRSNLNKG L+ FYWLLAVLGLL
Sbjct: 479 EQMKSMSTGLFLSTLSMGFFVSSLLVTIVDKVTNKQWLRSNLNKGHLSYFYWLLAVLGLL 538

Query: 540 NFMVFLFFAMKHQYNVQHRVKG---DKELENFND 570
           NF  F+  A KHQY  QH V     ++EL+  ND
Sbjct: 539 NFFFFILLARKHQYKDQHYVSSKDNNEELKISND 572

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356501284|ref|XP_003519455.1| PREDICTED: nitrate transporter 1.3-like [Glycine max]

 Score =  850 bits (2197), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 430/580 (74%), Positives = 502/580 (86%), Gaps = 7/580 (1%)

Query: 1   MVLVASHGEKDE-AENV--VDFRGNPVDRSKTGGWLAAGLILGTELSERICAMGISMNLV 57
           MVLVASHGE+++ AE +  VDFRG+PVD++KTGGWLAAGLILGTEL+ERIC MGISMNLV
Sbjct: 1   MVLVASHGEEEKGAEGIATVDFRGHPVDKTKTGGWLAAGLILGTELAERICVMGISMNLV 60

Query: 58  TYLVGDLHLSSAKSATIVTNFMGTLNLLGLLGGFLADAKLGRYLTVAIFASVTALVVGLL 117
           TYLVG L+L SA SATIVTN MGTLNLLGLLGGF+ADAKLGRYLTVAI A + AL V LL
Sbjct: 61  TYLVGVLNLPSADSATIVTNVMGTLNLLGLLGGFIADAKLGRYLTVAISAIIAALGVCLL 120

Query: 118 TSATSIPSMRPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQ 177
           T AT+IP MRPP C   R++HH+CI+A+GKQLA+L+ ALYT+A+GGGGIKSNVSGFGSDQ
Sbjct: 121 TVATTIPGMRPPVCSSVRKQHHECIQASGKQLALLFVALYTVAVGGGGIKSNVSGFGSDQ 180

Query: 178 FDTSDPKEEKAMIFFFNRFYFAISIGSLFAVIVLVYVQDNVGRGWGYGISAGTMVVAAAI 237
           FDT+DPKEE+ M+FFFNRFYF ISIGSLF+V+VLVYVQDN+GRGWGYGISAGTMV+A A+
Sbjct: 181 FDTTDPKEERRMVFFFNRFYFFISIGSLFSVVVLVYVQDNIGRGWGYGISAGTMVIAVAV 240

Query: 238 LLIGTPWYRFKKPRGSPLTVIWRVLLLAWKKRSHPYPDHPSLLNEYQNAKVPHTEKFKCL 297
           LL GTP+YRFK+P+GSPLTVIWRVL LAWKKRS P P   S LN Y  AKVPHT++F+ L
Sbjct: 241 LLCGTPFYRFKRPQGSPLTVIWRVLFLAWKKRSLPNPSQHSFLNGYLEAKVPHTQRFRFL 300

Query: 298 DKAAIIEDNAVANENKNNSWIVSTVTEVEEVKMVLKLLPIWATCILFWTVYSQMTTFTVE 357
           DKAAI+++N   +ENK N WIVSTVT+VEEVKMVLKLLPIW+TCILFWT+YSQM TFT+E
Sbjct: 301 DKAAILDENCSKDENKENPWIVSTVTQVEEVKMVLKLLPIWSTCILFWTIYSQMNTFTIE 360

Query: 358 QATFMNRKIGSFTVPSGSLSAFLFITILLFTSLNEKVFVPLARKITHSIQGMTSLQRVGT 417
           QATFMNRK+GS  VP+GSLSAFL ITILLFTSLNEK+ VPLARK+T ++QG+TSLQRVG 
Sbjct: 361 QATFMNRKVGSLVVPAGSLSAFLIITILLFTSLNEKLTVPLARKLTDNVQGLTSLQRVGI 420

Query: 418 GLIFSVIAMIVSAVIEQQRRETSVQKHIQISAFWLVPQYFLVGAGEAFVYVGQLEFFIRE 477
           GL+FS +AM V+A++E++RR  +V+ +  ISAFWLVPQ+FLVGAGEAF YVGQLEFFIRE
Sbjct: 421 GLVFSSVAMAVAAIVEKERRVNAVKNNTTISAFWLVPQFFLVGAGEAFAYVGQLEFFIRE 480

Query: 478 GPERMKSMSTGLFLSAISMGMFVSSMLVSIVDKITNKHWLRSNLNKGKLNNFYWLLAVLG 537
            PERMKSMSTGLFLS +SMG FVSS+LV+IVDK + K WLRSNLNKG+L+ FYWLLAVLG
Sbjct: 481 APERMKSMSTGLFLSTLSMGYFVSSLLVAIVDKASKKRWLRSNLNKGRLDYFYWLLAVLG 540

Query: 538 LLNFMVFLFFAMKHQYNVQHRVK----GDKELENFNDGKV 573
           + NF+ FL  AM+HQY VQH  K     +KEL + ND KV
Sbjct: 541 VQNFIFFLVLAMRHQYKVQHSTKPNDSAEKELVSANDVKV 580

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449468472|ref|XP_004151945.1| PREDICTED: nitrate transporter 1.3-like [Cucumis sativus]

 Score =  850 bits (2197), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 435/573 (75%), Positives = 495/573 (86%), Gaps = 6/573 (1%)

Query: 2   VLVASHGEKDEAENV-VDFRGNPVDRSKTGGWLAAGLILGTELSERICAMGISMNLVTYL 60
           VLV+ HG   E ++  VDF GNPVD+SKTGGWLAAGLILGTELSERIC MGISMNLVTYL
Sbjct: 184 VLVSKHGSGGEEDDAAVDFWGNPVDKSKTGGWLAAGLILGTELSERICVMGISMNLVTYL 243

Query: 61  VGDLHLSSAKSATIVTNFMGTLNLLGLLGGFLADAKLGRYLTVAIFASVTALVVGLLTSA 120
           VGDLHL+SAKSATIVTNF+G LNLLGLLGGFLADAKLGRYLTVAIFAS+TA+ V LLT A
Sbjct: 244 VGDLHLTSAKSATIVTNFLGALNLLGLLGGFLADAKLGRYLTVAIFASITAVGVILLTLA 303

Query: 121 TSIPSMRPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDT 180
           T+IP MRPP CDD  R+ HQCIEANG QLAMLYAALYTIALGGGGIKSNVSGFGSDQFDT
Sbjct: 304 TTIPGMRPPHCDDSTRQLHQCIEANGGQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDT 363

Query: 181 SDPKEEKAMIFFFNRFYFAISIGSLFAVIVLVYVQDNVGRGWGYGISAGTMVVAAAILLI 240
           +DPK EKAMIFFFNRFYFAISIGSLFAVIVLVYVQD VGRGWGYGIS GTM VA  +LL 
Sbjct: 364 NDPKGEKAMIFFFNRFYFAISIGSLFAVIVLVYVQDKVGRGWGYGISGGTMAVAVIVLLC 423

Query: 241 GTPWYRFKKPRGSPLTVIWRVLLLAWKKRSHPYPDHPSLLNEYQNAKVPHTEKFKCLDKA 300
           GT +YRFKKPRGSPLTVIWRV+LLAWKKRS P+P HPS LN+YQNAKVP+T +FKCLDKA
Sbjct: 424 GTTFYRFKKPRGSPLTVIWRVVLLAWKKRSLPHPAHPSFLNDYQNAKVPYTYRFKCLDKA 483

Query: 301 AIIEDNAVANENKNNSWIVSTVTEVEEVKMVLKLLPIWATCILFWTVYSQMTTFTVEQAT 360
           AI+++ A      NN WIVSTVTEVEEVKMV KL+PIW+T ILFWT+YSQMTTFTVEQA+
Sbjct: 484 AILDEYATT--GPNNPWIVSTVTEVEEVKMVFKLIPIWSTGILFWTIYSQMTTFTVEQAS 541

Query: 361 FMNRKIGSFTVPSGSLSAFLFITILLFTSLNEKVFVPLARKITHSIQGMTSLQRVGTGLI 420
           FM RK+GSF +P GS+SAFLFI ILL TSLNEK+F+P+ARK+TH++QG+TSLQR+G GL+
Sbjct: 542 FMERKVGSFEIPPGSMSAFLFIAILLVTSLNEKLFIPIARKLTHNVQGLTSLQRIGIGLV 601

Query: 421 FSVIAMIVSAVIEQQRRETSVQKHIQISAFWLVPQYFLVGAGEAFVYVGQLEFFIREGPE 480
           FS+  M+ +  +E++R+ ++V +  +ISAFWL+PQ+FLVGAGEAF YVGQLEFFIRE PE
Sbjct: 602 FSIFGMVAAGAVEKERKASAVGQSTRISAFWLIPQFFLVGAGEAFTYVGQLEFFIREAPE 661

Query: 481 RMKSMSTGLFLSAISMGMFVSSMLVSIVDKITNKHWLRSNLNKGKLNNFYWLLAVLGLLN 540
           +MKSMSTGLFLS +SMG FVSS+LV+IVDK+TNK WLRSNLNKG L+ FYWLLAVLGLLN
Sbjct: 662 QMKSMSTGLFLSTLSMGFFVSSLLVTIVDKVTNKQWLRSNLNKGHLSYFYWLLAVLGLLN 721

Query: 541 FMVFLFFAMKHQYNVQHRV---KGDKELENFND 570
           F  F+  A KHQY  QH V     ++EL+  ND
Sbjct: 722 FFFFILLARKHQYKDQHYVSSKDNNEELKISND 754

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357493285|ref|XP_003616931.1| Nitrate transporter [Medicago truncatula] gi|294829237|gb|ADF43023.1| nitrate transporter NRT1.3 [Medicago truncatula] gi|355518266|gb|AES99889.1| Nitrate transporter [Medicago truncatula]

 Score =  848 bits (2191), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 428/580 (73%), Positives = 502/580 (86%), Gaps = 7/580 (1%)

Query: 1   MVLVASHGEKDEAEN--VVDFRGNPVDRSKTGGWLAAGLILGTELSERICAMGISMNLVT 58
           MVLVAS+GEK   E+   VDFRG+P D++K+GGWLAAGLILGTEL+ERIC MGISMNLVT
Sbjct: 1   MVLVASNGEKKGTEDNAAVDFRGHPADKTKSGGWLAAGLILGTELAERICVMGISMNLVT 60

Query: 59  YLVGDLHLSSAKSATIVTNFMGTLNLLGLLGGFLADAKLGRYLTVAIFASVTALVVGLLT 118
           YLVGDLHL SA SATIVTNFMGTLNLLGLLGGFLADAKLGRYLTVAI A++  + V +LT
Sbjct: 61  YLVGDLHLHSASSATIVTNFMGTLNLLGLLGGFLADAKLGRYLTVAISATIATVGVCMLT 120

Query: 119 SATSIPSMRPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQF 178
            AT+IPSM PP C + RR+HHQCI+A+GKQL++L+AALYTIALGGGGIKSNVSGFGSDQF
Sbjct: 121 LATTIPSMTPPPCSEVRRQHHQCIQASGKQLSLLFAALYTIALGGGGIKSNVSGFGSDQF 180

Query: 179 DTSDPKEEKAMIFFFNRFYFAISIGSLFAVIVLVYVQDNVGRGWGYGISAGTMVVAAAIL 238
           DT+DPKEEK MIFFFNRFYF ISIGSLF+V+VLVYVQDN+GRGWGYGISAGTM+VA  IL
Sbjct: 181 DTNDPKEEKNMIFFFNRFYFFISIGSLFSVVVLVYVQDNIGRGWGYGISAGTMLVAVGIL 240

Query: 239 LIGTPWYRFKKPRGSPLTVIWRVLLLAWKKRSHPYPDHPSLLNEYQNAKVPHTEKFKCLD 298
           L GTP YRFKKP+GSPLT+IWRVL LAWKKR+ P P  P+LLN Y  AKV +T+KF+ LD
Sbjct: 241 LCGTPLYRFKKPQGSPLTIIWRVLFLAWKKRTLPIPSDPTLLNGYLEAKVTYTDKFRSLD 300

Query: 299 KAAIIEDNAVANENKNNSWIVSTVTEVEEVKMVLKLLPIWATCILFWTVYSQMTTFTVEQ 358
           KAAI+++    + N  N W+VST+T+VEEVKMV+KLLPIW+TCILFWTVYSQM TFT+EQ
Sbjct: 301 KAAILDETKSKDGNNENPWLVSTMTQVEEVKMVIKLLPIWSTCILFWTVYSQMNTFTIEQ 360

Query: 359 ATFMNRKIGSFTVPSGSLSAFLFITILLFTSLNEKVFVPLARKITHSIQGMTSLQRVGTG 418
           ATFMNRK+GS  +P+GSLSAFLFITILLFTSLNEK+ VPLARK+TH+ QG+TSLQRVG G
Sbjct: 361 ATFMNRKVGSLEIPAGSLSAFLFITILLFTSLNEKITVPLARKVTHNAQGLTSLQRVGIG 420

Query: 419 LIFSVIAMIVSAVIEQQRRETSVQKHIQISAFWLVPQYFLVGAGEAFVYVGQLEFFIREG 478
           LIFS++AM+VSA++E++RR+ +V+K   ISAFWLVPQ+FLVGAGEAF YVGQLEFFIRE 
Sbjct: 421 LIFSIVAMVVSAIVEKERRDNAVKKQTVISAFWLVPQFFLVGAGEAFAYVGQLEFFIREA 480

Query: 479 PERMKSMSTGLFLSAISMGMFVSSMLVSIVDKITNKHWLRSNLNKGKLNNFYWLLAVLGL 538
           PERMKSMSTGLFL  +SMG FVSS+LVSIVDK++ K WL+SNL+KGKL+ FYWLLA+LG+
Sbjct: 481 PERMKSMSTGLFLCTLSMGYFVSSLLVSIVDKVSKKRWLKSNLDKGKLDYFYWLLAILGV 540

Query: 539 LNFMVFLFFAMKHQYNVQH-----RVKGDKELENFNDGKV 573
           LNF++FL  +M+HQY VQH         +KEL   N+ KV
Sbjct: 541 LNFVLFLVLSMRHQYKVQHNNIESNDNVEKELVLVNEVKV 580

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	573
TAIR|locus:2089935	590	AT3G21670 [Arabidopsis thalian	0.965	0.937	0.714	1.7e-210
TAIR|locus:2043803	577	AT2G26690 [Arabidopsis thalian	0.921	0.915	0.470	4.5e-130
TAIR|locus:2008855	590	NRT1.1 "nitrate transporter 1.	0.863	0.838	0.467	4e-122
TAIR|locus:2018032	590	PTR6 "peptide transporter 6" [	0.944	0.916	0.375	1.8e-96
TAIR|locus:2080235	570	PTR1 "peptide transporter 1" [	0.928	0.933	0.374	4.8e-94
TAIR|locus:2041125	585	PTR2 "peptide transporter 2" [	0.860	0.842	0.384	2.1e-91
TAIR|locus:2161438	582	PTR3 "peptide transporter 3" [	0.959	0.945	0.355	2.8e-89
TAIR|locus:2150124	570	PTR5 "peptide transporter 5" [	0.916	0.921	0.367	5.9e-89
TAIR|locus:2025886	591	AT1G59740 [Arabidopsis thalian	0.952	0.923	0.357	9.6e-89
TAIR|locus:2006907	601	AT1G33440 [Arabidopsis thalian	0.975	0.930	0.340	1.2e-88

TAIR|locus:2089935 AT3G21670 [Arabidopsis thaliana (taxid:3702)]

 Score = 2035 (721.4 bits), Expect = 1.7e-210, P = 1.7e-210
 Identities = 398/557 (71%), Positives = 444/557 (79%)

Query:     1 MVLVAS-HGEKDEAENVVDFRGNPVDRSKTGGWLAAGLILGTELSERICAMGISMNLVTY 59
             MV V+S HG KD +E   D+RGNP D+SKTGGWL AGLILG+ELSERIC MGISMNLVTY
Sbjct:     1 MVHVSSSHGAKDGSEEAYDYRGNPPDKSKTGGWLGAGLILGSELSERICVMGISMNLVTY 60

Query:    60 LVGDLHLSSAKSATIVTNFMXXXXXXXXXXXXXXXXXXXRYLTVAIFASVTALVVGLLTS 119
             LVGDLH+SSAKSATIVTNFM                   RY  VAI ASVTAL V LLT 
Sbjct:    61 LVGDLHISSAKSATIVTNFMGTLNLLGLLGGFLADAKLGRYKMVAISASVTALGVLLLTV 120

Query:   120 ATSIPSMRPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFD 179
             AT+I SMRPP CDD+RR HHQCIEANG QLA+LY ALYTIALGGGGIKSNVSGFGSDQFD
Sbjct:   121 ATTISSMRPPICDDFRRLHHQCIEANGHQLALLYVALYTIALGGGGIKSNVSGFGSDQFD 180

Query:   180 TSDPKEEKAMIFFFNRFYFAISIGSLFAVIVLVYVQDNVGRGWGYGISAGTMVVAAAILL 239
             TSDPKEEK MIFFFNRFYF+IS+GSLFAVI LVYVQDNVGRGWGYGISA TMVVAA +LL
Sbjct:   181 TSDPKEEKQMIFFFNRFYFSISVGSLFAVIALVYVQDNVGRGWGYGISAATMVVAAIVLL 240

Query:   240 IGTPWYRFKKPRGSPLTVIWRVLLLAWKKRSHPYPDHPSLLNEYQNAKVPHTEKFKCLDK 299
              GT  YRFKKP+GSP T IWRV  LAWKKR   YP HPSLLN Y N  VPHTE  KCLDK
Sbjct:   241 CGTKRYRFKKPKGSPFTTIWRVGFLAWKKRKESYPAHPSLLNGYDNTTVPHTEMLKCLDK 300

Query:   300 AAIIEDNAVANEN---KNNSWIVSTVTEVEEVKMVLKLLPIWATCILFWTVYSQMTTFTV 356
             AAI ++ +  +     + + WIVSTVT+VEEVK+V+KL+PIWAT ILFWT+YSQMTTFTV
Sbjct:   301 AAISKNESSPSSKDFEEKDPWIVSTVTQVEEVKLVMKLVPIWATNILFWTIYSQMTTFTV 360

Query:   357 EQATFMNRKIGSFTVPSGXXXXXXXXXXXXXXXXNEKVFVPLARKITHSIQGMTSLQRVG 416
             EQATFM+RK+GSFTVP+G                NE+VFVPL R++T   QG+TSLQR+G
Sbjct:   361 EQATFMDRKLGSFTVPAGSYSAFLILTILLFTSLNERVFVPLTRRLTKKPQGITSLQRIG 420

Query:   417 TGLIFSVIAMIVSAVIEQQRRETSVQKHIQISAFWLVPQYFLVGAGEAFVYVGQLEFFIR 476
              GL+FS+ AM V+AVIE  RRE +V    +ISAFWLVPQYFLVGAGEAF YVGQLEFFIR
Sbjct:   421 VGLVFSMAAMAVAAVIENARREAAVNNDKKISAFWLVPQYFLVGAGEAFAYVGQLEFFIR 480

Query:   477 EGPERMKSMSTGLFLSAISMGMFVSSMLVSIVDKITNKHWLRSNLNKGKLNNFYWLLAVL 536
             E PERMKSMSTGLFLS ISMG FVSS+LVS+VD++T+K WLRSNLNK +LN FYWLL VL
Sbjct:   481 EAPERMKSMSTGLFLSTISMGFFVSSLLVSLVDRVTDKSWLRSNLNKARLNYFYWLLVVL 540

Query:   537 GLLNFMVFLFFAMKHQY 553
             G LNF++F+ FAMKHQY
Sbjct:   541 GALNFLIFIVFAMKHQY 557

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2043803 AT2G26690 [Arabidopsis thaliana (taxid:3702)]

 Score = 1276 (454.2 bits), Expect = 4.5e-130, P = 4.5e-130
 Identities = 259/550 (47%), Positives = 354/550 (64%)

Query:    15 NVVDFRGNPVDRSKTGGWLAAGLILGTELSERICAMGISMNLVTYLVGDLHLSSAKSATI 74
             + VD++G P D+SKTGGW+ A LILG E+ ER+  MGI++NLVTYL+  +HL S+ SA I
Sbjct:    11 DAVDYKGRPADKSKTGGWITAALILGIEVVERLSTMGIAVNLVTYLMETMHLPSSTSANI 70

Query:    75 VTNFMXXXXXXXXXXXXXXXXXXXRYLTVAIFASVTALVVGLLTSATSIPSMRPPQCDDY 134
             VT+FM                   R+ T+ IF+++ AL  G L  AT +P +RPP C   
Sbjct:    71 VTDFMGTSFLLCLLGGFLADSFLGRFKTIGIFSTIQALGTGALAVATKLPELRPPTC--- 127

Query:   135 RRKHH--QCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKAMIFF 192
                HH   CI A   Q+ +LY +LY IALG GG+KS++SGFGSDQFD  DPKE+  M FF
Sbjct:   128 ---HHGEACIPATAFQMTILYVSLYLIALGTGGLKSSISGFGSDQFDDKDPKEKAHMAFF 184

Query:   193 FNRFYFAISIGSLFAVIVLVYVQDNVGRGWGYGISAGTMVVAAAILLIGTPWYRFKKPRG 252
             FNRF+F IS+G+L AV VLVY+QD VGR W YGI   +M +A  I L GT  YR+KK +G
Sbjct:   185 FNRFFFFISMGTLLAVTVLVYMQDEVGRSWAYGICTVSMAIAIVIFLCGTKRYRYKKSQG 244

Query:   253 SPLTVIWRVLLLAWKKRSHPYPDHPSLLNEY--QNAKVPHTEKFKCLDKAAIIEDNAVAN 310
             SP+  I++V+  A++KR    P     L E   +  ++ HT++F  LDKAAI+ +     
Sbjct:   245 SPVVQIFQVIAAAFRKRKMELPQSIVYLYEDNPEGIRIEHTDQFHLLDKAAIVAEGDFEQ 304

Query:   311 ENKN----NSWIVSTVTEVEEVKMVLKLLPIWATCILFWTVYSQMTTFTVEQATFMNRKI 366
                     N W +S+VT+VEEVKM+++LLPIWAT I+FWT Y+QM TF+VEQA+ M R I
Sbjct:   305 TLDGVAIPNPWKLSSVTKVEEVKMMVRLLPIWATTIIFWTTYAQMITFSVEQASTMRRNI 364

Query:   367 GSFTVPSGXXXXXXXXXXXXXXXXNEKVFVPLARKITHSIQGMTSLQRVGTGLIFSVIAM 426
             GSF +P+G                 ++  +P  +K      G +SLQR+  GL+ S   M
Sbjct:   365 GSFKIPAGSLTVFFVAAILITLAVYDRAIMPFWKKWKGK-PGFSSLQRIAIGLVLSTAGM 423

Query:   427 IVSAVIEQQR---RETSVQKHIQISAFWLVPQYFLVGAGEAFVYVGQLEFFIREGPERMK 483
               +A++EQ+R    ++S QK + IS F LVPQ+FLVGAGEAF+Y GQL+FFI + P+ MK
Sbjct:   424 AAAALVEQKRLSVAKSSSQKTLPISVFLLVPQFFLVGAGEAFIYTGQLDFFITQSPKGMK 483

Query:   484 SMSTGLFLSAISMGMFVSSMLVSIVDKITNKH----WLRSNLNKGKLNNFYWLLAVLGLL 539
             +MSTGLFL+ +S+G FVSS LVSIV ++T+      WL  N+N G+L+ FYWLL +L  +
Sbjct:   484 TMSTGLFLTTLSLGFFVSSFLVSIVKRVTSTSTDVGWLADNINHGRLDYFYWLLVILSGI 543

Query:   540 NFMVFLFFAM 549
             NF+V++  A+
Sbjct:   544 NFVVYIICAL 553

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0009611 "response to wounding" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0030003 "cellular cation homeostasis" evidence=RCA

GO:0070838 "divalent metal ion transport" evidence=RCA

TAIR|locus:2008855 NRT1.1 "nitrate transporter 1.1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1201 (427.8 bits), Expect = 4.0e-122, P = 4.0e-122
 Identities = 240/513 (46%), Positives = 330/513 (64%)

Query:    18 DFRGNPVDRSKTGGWLAAGLILGTELSERICAMGISMNLVTYLVGDLHLSSAKSATIVTN 77
             DF+G P DRSKTGGW +A +IL  E  ER+  +GI +NLVTYL G +HL +A +A  VTN
Sbjct:    17 DFQGRPADRSKTGGWASAAMILCIEAVERLTTLGIGVNLVTYLTGTMHLGNATAANTVTN 76

Query:    78 FMXXXXXXXXXXXXXXXXXXXRYLTVAIFASVTALVVGLLTSATSIPSMRPPQCDDYRRK 137
             F+                   RYLT+AIFA++ A  V +LT +T IP +RPP+C+     
Sbjct:    77 FLGTSFMLCLLGGFIADTFLGRYLTIAIFAAIQATGVSILTLSTIIPGLRPPRCNPTTSS 136

Query:   138 HHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKAMIFFFNRFY 197
             H  C +A+G QL +LY ALY  ALG GG+K++VSGFGSDQFD ++PKE   M +FFNRF+
Sbjct:   137 H--CEQASGIQLTVLYLALYLTALGTGGVKASVSGFGSDQFDETEPKERSKMTYFFNRFF 194

Query:   198 FAISIGSLFAVIVLVYVQDNVGRGWGYGISAGTMVVAAAILLIGTPWYRFKKPRGSPLTV 257
             F I++GSL AV VLVYVQD+VGR WGYGI A  +V+A ++ L GT  YRFKK  GSP+T 
Sbjct:   195 FCINVGSLLAVTVLVYVQDDVGRKWGYGICAFAIVLALSVFLAGTNRYRFKKLIGSPMTQ 254

Query:   258 IWRVLLLAWKKRSHPYPDHPSLLNEYQNA-----------KVPHTEKFKCLDKAAIIEDN 306
             +  V++ AW+ R    P  PS L +  +            K+PHTE+F+ LDKAAI +  
Sbjct:   255 VAAVIVAAWRNRKLELPADPSYLYDVDDIIAAEGSMKGKQKLPHTEQFRSLDKAAIRDQE 314

Query:   307 AVANENKNNSWIVSTVTEVEEVKMVLKLLPIWATCILFWTVYSQMTTFTVEQATFMNRKI 366
             A    N  N W +ST+T+VEEVK ++++LPIWATCILFWTV++Q+TT +V Q+  ++R I
Sbjct:   315 AGVTSNVFNKWTLSTLTDVEEVKQIVRMLPIWATCILFWTVHAQLTTLSVAQSETLDRSI 374

Query:   367 GSFTVPSGXXXXXXXXXXXXXXXXNEKVFVPLARKITHSIQGMTSLQRVGTGLIFSVIAM 426
             GSF +P                   ++V + L +K+ +   G+  LQR+G GL F  +AM
Sbjct:   375 GSFEIPPASMAVFYVGGLLLTTAVYDRVAIRLCKKLFNYPHGLRPLQRIGLGLFFGSMAM 434

Query:   427 IVSAVIEQQRRETS-----VQKHIQISAFWLVPQYFLVGAGEAFVYVGQLEFFIREGPER 481
              V+A++E +R  T+       K + +  + L+PQY +VG GEA +Y GQL+FF+RE P+ 
Sbjct:   435 AVAALVELKRLRTAHAHGPTVKTLPLGFYLLIPQYLIVGIGEALIYTGQLDFFLRECPKG 494

Query:   482 MKSMSTGLFLSAISMGMFVSSMLVSIVDKITNK 514
             MK MSTGL LS +++G F SS+LV+IV+K T K
Sbjct:   495 MKGMSTGLLLSTLALGFFFSSVLVTIVEKFTGK 527

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006857 "oligopeptide transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0009414 "response to water deprivation" evidence=IMP

GO:0010167 "response to nitrate" evidence=RCA;IMP

GO:0005515 "protein binding" evidence=IPI

GO:0015706 "nitrate transport" evidence=IMP;RCA

GO:0016126 "sterol biosynthetic process" evidence=RCA

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA

GO:0052541 "plant-type cell wall cellulose metabolic process" evidence=RCA

GO:0052546 "cell wall pectin metabolic process" evidence=RCA

GO:0015112 "nitrate transmembrane transporter activity" evidence=IMP

TAIR|locus:2018032 PTR6 "peptide transporter 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 959 (342.6 bits), Expect = 1.8e-96, P = 1.8e-96
 Identities = 209/557 (37%), Positives = 316/557 (56%)

Query:     8 GEKDEAEN-VVDFRGNPVDRSKTGGWLAAGLILGTELSERICAMGISMNLVTYLVGDLHL 66
             G    AE+  +D  GNP  + KTG W A   ILG E  ER+   GI+ NL+TY   +LH 
Sbjct:    31 GLSSTAEDGSIDIYGNPPSKKKTGNWKACPFILGNECCERLAYYGIAKNLITYYTSELHE 90

Query:    67 SSAKSATIVTNFMXXXXXXXXXXXXXXXXXXXRYLTVAIFASVTALVVGLLTSATSIPSM 126
             S+  +A+ V  +                    RY T+A F+++  + + LLT + S+P +
Sbjct:    91 SNVSAASDVMIWQGTCYITPLIGAVIADSYWGRYWTIASFSAIYFIGMALLTLSASLPVL 150

Query:   127 RPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEE 186
             +P  C         C  A   Q A+ +  LY IALG GGIK  VS FG+DQFD +DP+E 
Sbjct:   151 KPAACAGVAAA--LCSPATTVQYAVFFTGLYLIALGTGGIKPCVSSFGADQFDDTDPRER 208

Query:   187 KAMIFFFNRFYFAISIGSLFAVIVLVYVQDNVGRGWGYGISAGTMVVAAAILLIGTPWYR 246
                  FFN FYF+I+IGS  +  +LV+VQ+NVG G G+ I    M V+ A   IGTP YR
Sbjct:   209 VRKASFFNWFYFSINIGSFISSTLLVWVQENVGWGLGFLIPTVFMGVSIASFFIGTPLYR 268

Query:   247 FKKPRGSPLTVIWRVLLLAWKKRSHPYPDHPSLLNEYQ--NA------KVPHTEKFKCLD 298
             F+KP GSP+T + +VL+ A++K     P+  S L E +  N+      K+ HT+ +K LD
Sbjct:   269 FQKPGGSPITRVCQVLVAAYRKLKLNLPEDISFLYETREKNSMIAGSRKIQHTDGYKFLD 328

Query:   299 KAAIIEDNAVANENKNNSWIVSTVTEVEEVKMVLKLLPIWATCILFWTVYSQMTTFTVEQ 358
             KAA+I +    +   +N W + TVT+VEEVK ++++ PIWA+ I++  +YSQ++T  V+Q
Sbjct:   329 KAAVISEYESKSGAFSNPWKLCTVTQVEEVKTLIRMFPIWASGIVYSVLYSQISTLFVQQ 388

Query:   359 ATFMNRKIGSFTVPSGXXXXXXXXXXXXXXXXNEKVFVPLARKITHSIQGMTSLQRVGTG 418
                MNR I SF +P                   ++  VP  R+ T   +G+T LQR+G G
Sbjct:   389 GRSMNRIIRSFEIPPASFGVFDTLIVLISIPIYDRFLVPFVRRFTGIPKGLTDLQRMGIG 448

Query:   419 LIFSVIAMIVSAVIEQQRRETSVQKHIQISAFWLVPQYFLVGAGEAFVYVGQLEFFIREG 478
             L  SV+++  +A++E  R + + Q  + +S FW +PQY L+G  E F ++G++EFF  E 
Sbjct:   449 LFLSVLSIAAAAIVETVRLQLA-QDFVAMSIFWQIPQYILMGIAEVFFFIGRVEFFYDES 507

Query:   479 PERMKSMSTGLFLSAISMGMFVSSMLVSIVDKIT----NKHWLRSNLNKGKLNNFYWLLA 534
             P+ M+S+ + L L   ++G ++SS+++++V   T       W+  +LNKG L+ F+WLL 
Sbjct:   508 PDAMRSVCSALALLNTAVGSYLSSLILTLVAYFTALGGKDGWVPDDLNKGHLDYFFWLLV 567

Query:   535 VLGLLNFMVFLFFAMKH 551
              LGL+N  V+    +KH
Sbjct:   568 SLGLVNIPVYALICVKH 584

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=ISS

GO:0009705 "plant-type vacuole membrane" evidence=IDA

TAIR|locus:2080235 PTR1 "peptide transporter 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 936 (334.5 bits), Expect = 4.8e-94, P = 4.8e-94
 Identities = 209/558 (37%), Positives = 311/558 (55%)

Query:     9 EKD--EAENVVDFRGNPVDRSKTGGWLAAGLILGTELSERICAMGISMNLVTYLVGDLHL 66
             EKD    +  VD   NP ++ KTG W A   ILG E  ER+   G+  NLV YL   L+ 
Sbjct:     3 EKDVYTQDGTVDIHKNPANKEKTGNWKACRFILGNECCERLAYYGMGTNLVNYLESRLNQ 62

Query:    67 SSAKSATIVTNFMXXXXXXXXXXXXXXXXXXXRYLTVAIFASVTALVVGLLTSATSIPSM 126
              +A +A  VTN+                    RY T+A F  +    + LLT + S+P +
Sbjct:    63 GNATAANNVTNWSGTCYITPLIGAFIADAYLGRYWTIATFVFIYVSGMTLLTLSASVPGL 122

Query:   127 RPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEE 186
             +P  C+        C   N  Q A+ + ALY IALG GGIK  VS FG+DQFD +D  E+
Sbjct:   123 KPGNCNA-----DTC-HPNSSQTAVFFVALYMIALGTGGIKPCVSSFGADQFDENDENEK 176

Query:   187 KAMIFFFNRFYFAISIGSLFAVIVLVYVQDNVGRGWGYGISAGTMVVAAAILLIGTPWYR 246
                  FFN FYF+I++G+L A  VLV++Q NVG GWG+G+    MV+A      G+ +YR
Sbjct:   177 IKKSSFFNWFYFSINVGALIAATVLVWIQMNVGWGWGFGVPTVAMVIAVCFFFFGSRFYR 236

Query:   247 FKKPRGSPLTVIWRVLLLAWKKRSHPYPDHPSLLNEYQN--------AKVPHTEKFKCLD 298
              ++P GSPLT I++V++ A++K S   P+  SLL E  +         K+ HT+  K  D
Sbjct:   237 LQRPGGSPLTRIFQVIVAAFRKISVKVPEDKSLLFETADDESNIKGSRKLVHTDNLKFFD 296

Query:   299 KAAIIEDNAVANENKNNSWIVSTVTEVEEVKMVLKLLPIWATCILFWTVYSQMTTFTVEQ 358
             KAA+   +    + + N W + +VT+VEE+K ++ LLP+WAT I+F TVYSQM+T  V Q
Sbjct:   297 KAAVESQSDSIKDGEVNPWRLCSVTQVEELKSIITLLPVWATGIVFATVYSQMSTMFVLQ 356

Query:   359 ATFMNRKIG-SFTVPSGXXXXXXXXXXXXXXXXNEKVFVPLARKITHSIQGMTSLQRVGT 417
                M++ +G +F +PS                  ++  +PLARK T + +G T LQR+G 
Sbjct:   357 GNTMDQHMGKNFEIPSASLSLFDTVSVLFWTPVYDQFIIPLARKFTRNERGFTQLQRMGI 416

Query:   418 GLIFSVIAMIVSAVIEQQRRE------TSVQKHIQISAFWLVPQYFLVGAGEAFVYVGQL 471
             GL+ S+ AMI + V+E  R +         QK I +S FW +PQY L+G  E F ++GQL
Sbjct:   417 GLVVSIFAMITAGVLEVVRLDYVKTHNAYDQKQIHMSIFWQIPQYLLIGCAEVFTFIGQL 476

Query:   472 EFFIREGPERMKSMSTGLFLSAISMGMFVSSMLVSIVDKITNKHWLRSNLNKGKLNNFY- 530
             EFF  + P+ M+S+ + L L+ +++G ++S++LV++V KIT K+  +       LN  + 
Sbjct:   477 EFFYDQAPDAMRSLCSALSLTTVALGNYLSTVLVTVVMKITKKNG-KPGWIPDNLNRGHL 535

Query:   531 -WLLAVLGLLNFMVFLFF 547
              +   +L  L+F+ FL +
Sbjct:   536 DYFFYLLATLSFLNFLVY 553

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0042936 "dipeptide transporter activity" evidence=IGI;IDA

GO:0042937 "tripeptide transporter activity" evidence=IDA

GO:0042938 "dipeptide transport" evidence=IDA

GO:0042939 "tripeptide transport" evidence=IDA

GO:0006807 "nitrogen compound metabolic process" evidence=IMP

GO:0009506 "plasmodesma" evidence=IDA

GO:0015824 "proline transport" evidence=RCA

GO:0015996 "chlorophyll catabolic process" evidence=RCA

TAIR|locus:2041125 PTR2 "peptide transporter 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 911 (325.7 bits), Expect = 2.1e-91, P = 2.1e-91
 Identities = 198/515 (38%), Positives = 297/515 (57%)

Query:    17 VDFRGNPVDRSKTGGWLAAGLILGTELSERICAMGISMNLVTYLVGDLHLSSAKSATIVT 76
             VDF GNP  + KTG W A   ILG E  ER+   GI+ NL+TYL   LH  +  +AT VT
Sbjct:    30 VDFNGNPPLKEKTGNWKACPFILGNECCERLAYYGIAGNLITYLTTKLHQGNVSAATNVT 89

Query:    77 NFMXXXXXXXXXXXXXXXXXXXRYLTVAIFASVTALVVGLLTSATSIPSMRPPQC-DDYR 135
              +                    RY T+A F+ +  + +  LT + S+P+++P +C  D+ 
Sbjct:    90 TWQGTCYLTPLIGAVLADAYWGRYWTIACFSGIYFIGMSALTLSASVPALKPAECIGDF- 148

Query:   136 RKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKAMIFFFNR 195
                  C  A   Q AM +  LY IALG GGIK  VS FG+DQFD +D +E      FFN 
Sbjct:   149 -----CPSATPAQYAMFFGGLYLIALGTGGIKPCVSSFGADQFDDTDSRERVRKASFFNW 203

Query:   196 FYFAISIGSLFAVIVLVYVQDNVGRGWGYGISAGTMVVAAAILLIGTPWYRFKKPRGSPL 255
             FYF+I+IG+L +  +LV++Q+N G G G+GI    M +A A    GTP YRF+KP GSP+
Sbjct:   204 FYFSINIGALVSSSLLVWIQENRGWGLGFGIPTVFMGLAIASFFFGTPLYRFQKPGGSPI 263

Query:   256 TVIWRVLLLAWKKRSHPYPDHPSLLNEYQNA--------KVPHTEKFKCLDKAAIIEDNA 307
             T I +V++ +++K S   P+  +LL E Q+         K+ HT+  + LDKAA+I +  
Sbjct:   264 TRISQVVVASFRKSSVKVPEDATLLYETQDKNSAIAGSRKIEHTDDCQYLDKAAVISEEE 323

Query:   308 VANENKNNSWIVSTVTEVEEVKMVLKLLPIWATCILFWTVYSQMTTFTVEQATFMNRKIG 367
               + + +NSW + TVT+VEE+K+++++ PIWA+ I+F  VY+QM+T  V+Q   MN KIG
Sbjct:   324 SKSGDYSNSWRLCTVTQVEELKILIRMFPIWASGIIFSAVYAQMSTMFVQQGRAMNCKIG 383

Query:   368 SFTVPSGXXXXXXXXXXXXXXXXNEKVFVPLARKITHSIQGMTSLQRVGTGLIFSVIAMI 427
             SF +P                   ++  VPLARK T   +G T +QR+G GL  SV+ M 
Sbjct:   384 SFQLPPAALGTFDTASVIIWVPLYDRFIVPLARKFTGVDKGFTEIQRMGIGLFVSVLCMA 443

Query:   428 VSAVIEQQRRETS-----VQKH--IQISAFWLVPQYFLVGAGEAFVYVGQLEFFIREGPE 480
              +A++E  R   +     V+    + IS  W +PQYF++GA E F ++GQLEFF  + P+
Sbjct:   444 AAAIVEIIRLHMANDLGLVESGAPVPISVLWQIPQYFILGAAEVFYFIGQLEFFYDQSPD 503

Query:   481 RMKSMSTGLFLSAISMGMFVSSMLVSIVDKITNKH 515
              M+S+ + L L   ++G ++SS+++++V   T ++
Sbjct:   504 AMRSLCSALALLTNALGNYLSSLILTLVTYFTTRN 538

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA

GO:0015112 "nitrate transmembrane transporter activity" evidence=IDA

GO:0005773 "vacuole" evidence=IDA

GO:0000325 "plant-type vacuole" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0009705 "plant-type vacuole membrane" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0006869 "lipid transport" evidence=RCA

GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=RCA

GO:0010351 "lithium ion transport" evidence=RCA

GO:0016558 "protein import into peroxisome matrix" evidence=RCA

GO:0015334 "high affinity oligopeptide transporter activity" evidence=IDA

GO:0042936 "dipeptide transporter activity" evidence=IGI;IDA

GO:0042937 "tripeptide transporter activity" evidence=IDA

GO:0042938 "dipeptide transport" evidence=IDA

GO:0042939 "tripeptide transport" evidence=IDA

GO:0015197 "peptide transporter activity" evidence=ISS

GO:0015833 "peptide transport" evidence=TAS

TAIR|locus:2161438 PTR3 "peptide transporter 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 891 (318.7 bits), Expect = 2.8e-89, P = 2.8e-89
 Identities = 206/580 (35%), Positives = 325/580 (56%)

Query:     8 GEKDEAENVVDFRGNPVDRSKTGGWLAAGLILGTELSERICAMGISMNLVTYLVGDLHLS 67
             G+    +  VD +GNPV RS  G W A   ++  E+ ER+   GIS NL  Y+   LH  
Sbjct:     7 GDDYTKDGTVDLQGNPVRRSIRGRWKACSFVVVYEVFERMAYYGISSNLFIYMTTKLHQG 66

Query:    68 SAKSATIVTNFMXXXXXXXXXXXXXXXXXXXRYLTVAIFASVTALVVGLLTSATSIPSMR 127
             + KS+  VTN++                   RY+T  I  ++    + +LT + +IP ++
Sbjct:    67 TVKSSNNVTNWVGTSWLTPILGAYVGDALLGRYITFVISCAIYFSGMMVLTLSVTIPGIK 126

Query:   128 PPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEK 187
             PP+C     ++  C +A+  QLA+ + ALYT+A+G GG K N+S  G+DQFD  DPKE+ 
Sbjct:   127 PPECSTTNVEN--CEKASVLQLAVFFGALYTLAIGTGGTKPNISTIGADQFDVFDPKEKT 184

Query:   188 AMIFFFNRFYFAISIGSLFAVIVLVYVQDNVGRGWGYGISAGTMVVAAAILLIGTPWYRF 247
               + FFN + F+I  G+LFA  VLVYVQDNVG   GYG+    + ++  I L+GTP+YR 
Sbjct:   185 QKLSFFNWWMFSIFFGTLFANTVLVYVQDNVGWTLGYGLPTLGLAISITIFLLGTPFYRH 244

Query:   248 KKPRGSPLTVIWRVLLLAWKKRSHP-------YPDHPSLLNEYQNAKVPH-TEKFKCLDK 299
             K P GSP T + RV++ +++K + P       + + PSL  E + A   H T   + LD+
Sbjct:   245 KLPTGSPFTKMARVIVASFRKANAPMTHDITSFHELPSLEYERKGAFPIHPTPSLRFLDR 304

Query:   300 AAIIEDNAVANENKNNSWIVSTVTEVEEVKMVLKLLPIWATCILFWTVYSQMTTFTVEQA 359
             A++           N+ W + T TEVEE K +L++LP+     +   + +Q+ T  V+Q 
Sbjct:   305 ASL-------KTGTNHKWNLCTTTEVEETKQMLRMLPVLFITFVPSMMLAQINTLFVKQG 357

Query:   360 TFMNRKI-GSFTVPSGXXXXXXXXXXXXXXXXNEKVFVPLARKITHSIQGMTSLQRVGTG 418
             T ++RK+ GSF++P                   ++VFV + RK T + +G+T LQR+G G
Sbjct:   358 TTLDRKVTGSFSIPPASLSGFVTLSMLISIVLYDRVFVKITRKFTGNPRGITLLQRMGIG 417

Query:   419 LIFSVIAMIVSAVIEQQRRETSVQK---H-----IQISAFWLVPQYFLVGAGEAFVYVGQ 470
             LIF ++ MIV++V E+ R + +      H     + ++ F L+PQ+ L+G  ++F+ V +
Sbjct:   418 LIFHILIMIVASVTERYRLKVAADHGLIHQTGVKLPLTIFALLPQFVLMGMADSFLEVAK 477

Query:   471 LEFFIREGPERMKSMSTGLFLSAISMGMFVSSMLVSIVDKITNKH---WLRSNLNKGKLN 527
             LEFF  + PE MKS+ T    +++++G F+SS L+S V +IT K    W+ +NLN+ +L+
Sbjct:   478 LEFFYDQAPESMKSLGTSYSTTSLAIGNFMSSFLLSTVSEITKKRGRGWILNNLNESRLD 537

Query:   528 NFYWLLAVLGLLNFMVFLFFAMKHQYNVQHRVKGD-KELE 566
              +Y   AVL L+NF++FL     + Y  +     D KE+E
Sbjct:   538 YYYLFFAVLNLVNFVLFLVVVKFYVYRAEVTDSVDVKEVE 577

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA;ISS;RCA

GO:0016020 "membrane" evidence=IEA;ISS

GO:0009611 "response to wounding" evidence=IEP

GO:0042538 "hyperosmotic salinity response" evidence=IMP

GO:0043201 "response to leucine" evidence=IEP

GO:0080052 "response to histidine" evidence=IEP

GO:0080053 "response to phenylalanine" evidence=IEP

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0042742 "defense response to bacterium" evidence=IMP

GO:0042936 "dipeptide transporter activity" evidence=IGI

GO:0042937 "tripeptide transporter activity" evidence=IGI

GO:0042938 "dipeptide transport" evidence=IGI

GO:0042939 "tripeptide transport" evidence=IGI

TAIR|locus:2150124 PTR5 "peptide transporter 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 888 (317.7 bits), Expect = 5.9e-89, P = 5.9e-89
 Identities = 203/552 (36%), Positives = 307/552 (55%)

Query:    14 ENVVDFRGNPVDRSKTGGWLAAGLILGTELSERICAMGISMNLVTYLVGDLHLSSAKSAT 73
             +  +D    P +++KTG W A   ILGTE  ER+   G+S NL+ YL   +++ +  ++ 
Sbjct:    11 DGTLDIHKKPANKNKTGTWKACRFILGTECCERLAYYGMSTNLINYLEKQMNMENVSASK 70

Query:    74 IVTNFMXXXXXXXXXXXXXXXXXXXRYLTVAIFASVTALVVGLLTSATSIPSMRPPQCDD 133
              V+N+                    RY T+A F  +    + LLT + S+P + P  C  
Sbjct:    71 SVSNWSGTCYATPLIGAFIADAYLGRYWTIASFVVIYIAGMTLLTISASVPGLTPT-CSG 129

Query:   134 YRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKAMIFFF 193
                    C  A   Q A+ + ALY IALG GGIK  VS FG+DQFD +D KE+++   FF
Sbjct:   130 -----ETC-HATAGQTAITFIALYLIALGTGGIKPCVSSFGADQFDDTDEKEKESKSSFF 183

Query:   194 NRFYFAISIGSLFAVIVLVYVQDNVGRGWGYGISAGTMVVAAAILLIGTPWYRFKKPRGS 253
             N FYF I++G++ A  VLV++Q NVG GWG G+    M +A      G+ +YR +KP GS
Sbjct:   184 NWFYFVINVGAMIASSVLVWIQMNVGWGWGLGVPTVAMAIAVVFFFAGSNFYRLQKPGGS 243

Query:   254 PLTVIWRVLLLAWKKRSHPYPDHPSLLNEYQNA--------KVPHTEKFKCLDKAAIIED 305
             PLT + +V++ + +K     P+  SLL E Q+A        K+ HT+     DKAA+  +
Sbjct:   244 PLTRMLQVIVASCRKSKVKIPEDESLLYENQDAESSIIGSRKLEHTKILTFFDKAAVETE 303

Query:   306 NAVANENKNNSWIVSTVTEVEEVKMVLKLLPIWATCILFWTVYSQMTTFTVEQATFMNRK 365
             +      K++SW + TVT+VEE+K +++LLPIWAT I+F +VYSQM T  V Q   +++ 
Sbjct:   304 SDNKGAAKSSSWKLCTVTQVEELKALIRLLPIWATGIVFASVYSQMGTVFVLQGNTLDQH 363

Query:   366 IG-SFTVPSGXXXXXXXXXXXXXXXXNEKVFVPLARKITHSIQGMTSLQRVGTGLIFSVI 424
             +G +F +PS                  +K+ VP ARK T   +G T LQR+G GL+ S+ 
Sbjct:   364 MGPNFKIPSASLSLFDTLSVLFWAPVYDKLIVPFARKYTGHERGFTQLQRIGIGLVISIF 423

Query:   425 AMIVSAVIEQQRRETSVQKH-------IQISAFWLVPQYFLVGAGEAFVYVGQLEFFIRE 477
             +M+ + ++E  R    VQ H       I ++ FW VPQYFLVG  E F ++GQLEFF  +
Sbjct:   424 SMVSAGILEVARLNY-VQTHNLYNEETIPMTIFWQVPQYFLVGCAEVFTFIGQLEFFYDQ 482

Query:   478 GPERMKSMSTGLFLSAISMGMFVSSMLVSIVDKITNKHWLRSNLNKGKLNNFY--WLLAV 535
              P+ M+S+ + L L+AI+ G ++S+ LV++V K+T        + K  LNN +  +   +
Sbjct:   483 APDAMRSLCSALSLTAIAFGNYLSTFLVTLVTKVTRSGGRPGWIAKN-LNNGHLDYFFWL 541

Query:   536 LGLLNFMVFLFF 547
             L  L+F+ FL +
Sbjct:   542 LAGLSFLNFLVY 553

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0009860 "pollen tube growth" evidence=IMP

GO:0042936 "dipeptide transporter activity" evidence=IDA

GO:0042938 "dipeptide transport" evidence=IDA

TAIR|locus:2025886 AT1G59740 [Arabidopsis thaliana (taxid:3702)]

 Score = 886 (316.9 bits), Expect = 9.6e-89, P = 9.6e-89
 Identities = 204/571 (35%), Positives = 316/571 (55%)

Query:    14 ENVVDFRGNPVDRSKTGGWLAAGLILGTELSERICAMGISMNLVTYLVGDLHLSSAKSAT 73
             E  VD+RG P + +K GG  AA  +LG +  E +    +  NL+TY++ ++H   +K+A 
Sbjct:    27 EESVDWRGRPSNPNKHGGMRAALFVLGLQAFEIMGIAAVGNNLITYVINEMHFPLSKAAN 86

Query:    74 IVTNFMXXXXXXXXXXXXXXXXXXXRYLTVAIFASVTALVVGLLTSATSIPSMRPPQCDD 133
             IVTNF+                    + T+ IF  V      LL+    +P ++PP+C+ 
Sbjct:    87 IVTNFVGTIFIFALLGGYLSDAFLGSFWTIIIFGFVELSGFILLSVQAHLPQLKPPKCNP 146

Query:   134 YRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKAMIFFF 193
                +   C EA G +  + + ALY +ALG G +K N+   G+DQF  S PK+ K +  +F
Sbjct:   147 LIDQ--TCEEAKGFKAMIFFMALYLVALGSGCVKPNMIAHGADQFSQSHPKQSKRLSSYF 204

Query:   194 NRFYFAISIGSLFAVIVLVYVQDNVGRGWGYGISAGTMVVAAAILLIGTPWYRFKKPRGS 253
             N  YFA S+G L A+ +LV+VQ + G   G+G+SA  M +    L+ GT ++R K+PR S
Sbjct:   205 NAAYFAFSMGELIALTLLVWVQTHSGMDIGFGVSAAAMTMGIISLVSGTMYFRNKRPRRS 264

Query:   254 PLTVIWRVLLLAWKKRSHPYPDHPSLL-------NEY-QNAKVPHTEKFKCLDKAAI-IE 304
               T I  V++ A  KR    P  P +L       N+   ++ +PHT +F+ LDKA I I+
Sbjct:   265 IFTPIAHVIVAAILKRKLASPSDPRMLHGDHHVANDVVPSSTLPHTPRFRFLDKACIKIQ 324

Query:   305 DNAVANENKNNSWIVSTVTEVEEVKMVLKLLPIWATCILFWTVYSQMTTFTVEQATFMNR 364
             D       K + W + TVT+VE+VK ++ L+PI+A+ I+F T+ +Q+ TF+V+Q + MN 
Sbjct:   325 DT----NTKESPWRLCTVTQVEQVKTLISLVPIFASTIVFNTILAQLQTFSVQQGSSMNT 380

Query:   365 KIG-SFTVPSGXXXXXXXXXXXXXXXXNEKVFVPLARKITHSIQGMTSLQRVGTGLIFSV 423
             ++  SF +P                   +   VP ARK+T    G+  L R+G GL  S 
Sbjct:   381 RLSNSFHIPPASLQAIPYIMLIFLVPLYDSFLVPFARKLTGHNSGIPPLTRIGIGLFLST 440

Query:   424 IAMIVSAVIEQQRRETSVQKHIQISAFWLVPQYFLVGAGEAFVYVGQLEFFIREGPERMK 483
              +M+ +A++E++RR++SV     +S FW+ PQ+ + G  E F  VG +EFF ++  + M+
Sbjct:   441 FSMVSAAMLEKKRRDSSVLDGRILSIFWITPQFLIFGISEMFTAVGLIEFFYKQSAKGME 500

Query:   484 SMSTGLFLSAISMGMFVSSMLVSIVDKITN-----KHWLRSN-LNKGKLNNFYWLLAVLG 537
             S    L   + S G + SS+LVS+V+KIT+     K WL  N LNK +L+ FYWLLAVL 
Sbjct:   501 SFLMALTYCSYSFGFYFSSVLVSVVNKITSTSVDSKGWLGENDLNKDRLDLFYWLLAVLS 560

Query:   538 LLNFMVFLFFA---MKHQYNVQHRVKGDKEL 565
             LLNF+ +LF++   +K        V GD+ +
Sbjct:   561 LLNFLSYLFWSRWNIKSSRRNNTNVVGDENI 591

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0009624 "response to nematode" evidence=IEP;RCA

TAIR|locus:2006907 AT1G33440 [Arabidopsis thaliana (taxid:3702)]

 Score = 885 (316.6 bits), Expect = 1.2e-88, P = 1.2e-88
 Identities = 199/584 (34%), Positives = 323/584 (55%)

Query:     7 HGEKDEAENV-VDFRGNPVDRSKTGGWLAAGLILGTELSERICAMGISMNLVTYLVGDLH 65
             H  ++  +++ VDFRG P   SK GG  AA  +LG +  E +    +  NL+TY+  ++H
Sbjct:    16 HTSEESLDDLCVDFRGRPCRPSKHGGTRAALFVLGFQAFEMMAIAAVGNNLITYVFNEMH 75

Query:    66 LSSAKSATIVTNFMXXXXXXXXXXXXXXXXXXXRYLTVAIFASVTALVVGLLTSATSIPS 125
                +KSA +VTNF+                    + T+ +F  +      LL+    +P 
Sbjct:    76 FPLSKSANLVTNFIGTVFLLSLLGGFLSDSYLGSFRTMLVFGVIEISGFILLSVQAHLPE 135

Query:   126 MRPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKE 185
             +RPP+C+      H C+EANG + A LY AL  +ALG G +K N+   G++QF   D ++
Sbjct:   136 LRPPECNMKSTTIH-CVEANGYKAATLYTALCLVALGSGCLKPNIISHGANQFQRKDLRK 194

Query:   186 EKAMIFFFNRFYFAISIGSLFAVIVLVYVQDNVGRGWGYGISAGTMVVAAAILLIGTPWY 245
               +   FFN  YFA S+G L A+ +LV+VQ + G   G+G+SA  M      L+ GT +Y
Sbjct:   195 LSS---FFNAAYFAFSMGQLIALTLLVWVQTHSGMDVGFGVSAAVMAAGMISLVAGTSFY 251

Query:   246 RFKKPRGSPLTVIWRVLLLAWKKRSHPYPDHPSLLNEYQNAKV---P--HTEKFKCLDKA 300
             R K P GS  T I +V + A  KR    P +P+++++     V   P  H+ KF+ LDKA
Sbjct:   252 RNKPPSGSIFTPIAQVFVAAITKRKQICPSNPNMVHQPSTDLVRVKPLLHSNKFRFLDKA 311

Query:   301 AIIEDNAVANENKNNSWIVSTVTEVEEVKMVLKLLPIWATCILFWTVYSQMTTFTVEQAT 360
              I +    A E+    W + T+ +V +VK++L ++PI+A  I+F T+ +Q+ TF+V+Q +
Sbjct:   312 CI-KTQGKAMESP---WRLCTIEQVHQVKILLSVIPIFACTIIFNTILAQLQTFSVQQGS 367

Query:   361 FMNRKIG-SFTVPSGXXXXXXXXXXXXXXXXNEKVFVPLARKITHSIQGMTSLQRVGTGL 419
              MN  I  +F +P                   E  FVPLARK+T +  G++ LQR+GTGL
Sbjct:   368 SMNTHITKTFQIPPASLQAIPYIILIFFVPLYETFFVPLARKLTGNDSGISPLQRIGTGL 427

Query:   420 IFSVIAMIVSAVIEQQRRETSVQKHIQISAFWLVPQYFLVGAGEAFVYVGQLEFFIREGP 479
               +  +M+ +A++E++RRE+ +++++ +S FW+ PQ+ + G  E F  VG +EFF ++  
Sbjct:   428 FLATFSMVAAALVEKKRRESFLEQNVMLSIFWIAPQFLIFGLSEMFTAVGLVEFFYKQSS 487

Query:   480 ERMKSMSTGLFLSAISMGMFVSSMLVSIVDKITNKH-------WLRSN-LNKGKLNNFYW 531
             + M+S  T +   + S G ++SS+LVS V+++T+ +       WL  N LNK +L++FYW
Sbjct:   488 QSMQSFLTAMTYCSYSFGFYLSSVLVSTVNRVTSSNGSGTKEGWLGDNDLNKDRLDHFYW 547

Query:   532 LLAVLGLLNFMVFLFFAMKHQYN--VQHRVKGDKELENFNDGKV 573
             LLA L  +NF  +LF++  +  +    H       LE   +G++
Sbjct:   548 LLASLSFINFFNYLFWSRWYSCDPSATHHSAEVNSLEALENGEI 591

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0009624 "response to nematode" evidence=RCA

GO:0010089 "xylem development" evidence=RCA

GO:0044036 "cell wall macromolecule metabolic process" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9LVE0	PTR33_ARATH	No assigned EC number	0.7693	0.9633	0.9355	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.7.8	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00025937001 SubName- Full=Chromosome chr12 scaffold_36, whole genome shotgun sequence; (679 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	573
pfam00854	372	pfam00854, PTR2, POT family	2e-68
COG3104	498	COG3104, PTR2, Dipeptide/tripeptide permease [Amin	2e-34
TIGR00926	641	TIGR00926, 2A1704, Peptide:H+ symporter (also tran	1e-22
TIGR00924	475	TIGR00924, yjdL_sub1_fam, amino acid/peptide trans	1e-16
PRK09584	500	PRK09584, tppB, putative tripeptide transporter pe	5e-11
PRK15462	493	PRK15462, PRK15462, dipeptide/tripeptide permease	3e-08
PRK10207	489	PRK10207, PRK10207, dipeptide/tripeptide permease	2e-06
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	3e-05
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	7e-04

>gnl|CDD|216153 pfam00854, PTR2, POT family

 Score =  225 bits (576), Expect = 2e-68
 Identities = 123/410 (30%), Positives = 186/410 (45%), Gaps = 53/410 (12%)

Query: 100 YLTVAIFASVTALVVGLLTSATSIPSMRPPQCDDYRRKHHQCIEANGKQLAMLYAALYTI 159
           + T+ + + + A+   LLT     PS+ P                   Q+A+ Y  LY I
Sbjct: 1   FKTILLGSIIYAIGHVLLTLGAIPPSLSP------------------VQVALFYIGLYLI 42

Query: 160 ALGGGGIKSNVSGFGSDQFDTSDPKEEKAMIFFFNRFYFAISIGSLFAVIVLVYVQDNVG 219
           ALG GGIK NVS FG+DQFD     ++     FF+ FYF+I+ GSL A I+  Y+Q NVG
Sbjct: 43  ALGTGGIKPNVSAFGADQFD---ETQDPRRDGFFSWFYFSINAGSLIATIITPYLQQNVG 99

Query: 220 RGWGYGISAGTMVVAAAILLIGTPWYRFK-KPRGSPLTV-IWRVLLLAWKKRSHPYPDHP 277
              G+G+ A  M++A  + L+G+  Y+ K  P GSP TV I  ++  A K R    P   
Sbjct: 100 YPLGFGLPAVGMLLALLVFLLGSRRYKKKAPPGGSPFTVCIAFIITAAGKNRKLQLPKDS 159

Query: 278 SLLNEYQNAKVPHTEKF-----KCLDKAAIIEDNAVANENKNNSWIVSTVTEVEEVKMVL 332
             L            K      K   + A+I                     V  ++ +L
Sbjct: 160 HWLYWAL----EKYNKRSISQTKVHTRVAVIFIPLPKFWALF-----DQQGSVWLLQAIL 210

Query: 333 KLLPIWATCILFWTVYSQMTTFTVEQATFMNRKIGS-FTVPSGSLSAFLFITILLFTSLN 391
            +LPIWA  IL   +++Q+ T  V Q   M+R I   F +P  S  +F  + +L+   + 
Sbjct: 211 LMLPIWAFWILPDQMWTQLATLIVRQVPTMDRIIYPLFEIPPASFQSFNPLAVLILLPIL 270

Query: 392 EKVFVPLARKITHSIQGMTSLQRVGTGLIFSVIAMIVSAVIEQQRR-------ETSVQKH 444
           + +  PL R      +G+T  QR G G+   ++A  ++A++E +R         TS    
Sbjct: 271 DFLVYPLLRL----KRGLTLPQRFGLGMFILIVANFLAAIVEAKRPRYAAALGLTSPGWT 326

Query: 445 IQISAFWLVPQYFLVGAGEAFVYVGQLEFFIREGPERMKSMSTGLFLSAI 494
           + +   W +P+ F+ G G A    G LEF     P  M S+ T L  +A 
Sbjct: 327 VPLFILWSLPELFISGVGLA----GALEFAPDALPSSMMSLWTLLSAAAA 372

The POT (proton-dependent oligopeptide transport) family all appear to be proton dependent transporters. Length = 372

>gnl|CDD|225646 COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism]

 Score =  135 bits (343), Expect = 2e-34
 Identities = 100/491 (20%), Positives = 179/491 (36%), Gaps = 79/491 (16%)

Query: 34  AAGLILGTELSERICAMGISMNLVTYLV----GDLHLSSAKSATIVTNFMGTLNLLGLLG 89
              LI   EL ER    G+   L+ YL       L      +  + + +   + L  ++G
Sbjct: 22  GLYLIFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIG 81

Query: 90  GFLADAKLGRYLTVAIFASVTALVVGLLTSATSIPSMRPPQCDDYRRKHHQCIEANGKQL 149
           G+LAD  LG   T+ + A +  + +G L  A S                      +    
Sbjct: 82  GWLADRVLGTRRTIVLGAIL--MAIGHLVLAIS----------------------SVSGP 117

Query: 150 AMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKAMIFFFNRFYFAISIGSLFAVI 209
             LY  L  I +G G  K N+S    + +   DP+ +      F  FY  I+IGSL A I
Sbjct: 118 GGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPRRDGG----FTLFYMGINIGSLIAPI 173

Query: 210 VLVYVQDNVGRGWGYGISAGTMVVAAAILLIGTPWYRFKKPRGSPLTVIWRVLLLAWKKR 269
           +   +  N G   G+G++A  M++   I L+G                           +
Sbjct: 174 ITGLLAINYGWHVGFGLAAVGMIIGLVIFLLGRRHV-----------------------K 210

Query: 270 SHPYPDHPSLLNEYQNAKVPHTEKFKCLDKAAIIEDNAVANENKNNSWIVSTVTEV---- 325
                  P+ L+   N  +P       +  AA++      N       ++S +  +    
Sbjct: 211 GIGGVPDPNPLS--FNFLLPVLGGLVVMILAALLTLLLNQNTFSGVLLVISILIAIIYFA 268

Query: 326 ---------EEVKMVLKLLPIWATCILFWTVYSQM-TTFTVEQATFMNRKIGSFTVPSGS 375
                    +E + +L  +P++   ++FW +Y QM ++  +     +NR+I  F VP   
Sbjct: 269 EAFRSPKVFDERRRLLAAIPLFLFAVIFWALYEQMGSSLNLYADRNVNRQIFGFEVPPAW 328

Query: 376 LSAFLFITILLFTSLNEKVFVPLARKITHSIQGMTSLQRVGTGLIFSVIAMIVSAVIEQQ 435
             +     I+LF+ +   ++  L R        +        GLI + +  ++  +    
Sbjct: 329 FQSLNPFFIILFSPILAALWTKLGRGNKQPSTPIK----FALGLILAGLGFLILLLAGIW 384

Query: 436 RRETSVQKHIQISAFWLVPQYFLVGAGEAFVYVGQLEFFIREGPERMKSMSTGLFLSAIS 495
               S      +S +WLV  Y L   GE F+    L    +  P  +KS    ++   ++
Sbjct: 385 FGGPS----GLVSVWWLVLSYVLQSFGELFISPVGLSMVTKLAPPALKSFIMAMWFLTVA 440

Query: 496 MGMFVSSMLVS 506
            G  +   +  
Sbjct: 441 AGQTLGGQVAG 451

Length = 498

>gnl|CDD|233190 TIGR00926, 2A1704, Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

 Score =  102 bits (255), Expect = 1e-22
 Identities = 86/391 (21%), Positives = 157/391 (40%), Gaps = 61/391 (15%)

Query: 56  LVTYLVGDLHLSSAKSATIVTNFMGTLNLLGLLGGFLADAKLGRYLTVAIFASVTALVVG 115
           LV YL+  L  +   +  I   F     L  L+G  +AD+ LG++ T+   + V  +   
Sbjct: 10  LVLYLLNFLGWNEDTATNIYHTFTYLCYLTPLIGALIADSWLGKFKTILYLSLVYVVGHA 69

Query: 116 LLTSATSIPSMRPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGS 175
           L  S  ++PS+  P  D                 A+    L  IALG GGIK  VS FG 
Sbjct: 70  LA-SLGAVPSLGHPLHD-----------------ALSLVGLALIALGTGGIKPCVSAFGG 111

Query: 176 DQFDTSDPKEEKAMIFFFNRFYFAISIGSLFAVIVLVYVQDNVGRGWGY----GISAGTM 231
           DQF+    ++      FF+ FYFAI+ GSLF+ I+   ++ +VG                
Sbjct: 112 DQFEE---RQLSLRFRFFSFFYFAINAGSLFSTIITPILRGDVGCFGCQDCFPLAFGVPG 168

Query: 232 VVAAAILLIGTPWYRFKKPRGSPLTVIWRVLLLAW---KKRSHPYPDHPSLLNEYQNAKV 288
           ++    L++ +   +  K +     ++ +V+       KKR     +    L+    A  
Sbjct: 169 ILMTLALIVFSMGSKMYKKKPPVGNIVSKVMKCIVFALKKRFRTRSEDWPRLHWLDWAAP 228

Query: 289 PHTEKFKCLDKAAIIEDNAVANENKNNSWIVSTVTEVEEVKMVLKLLPIWATCILFWTVY 348
            +  +                               +   K +L++L ++    +FW ++
Sbjct: 229 KYLIRM------------------------------IRSTKRLLRVLFLFIPLPMFWALF 258

Query: 349 SQMTTFTVEQATFMNRKIGSFTVPSGSLSAFLFITILLFTSLNEKVFVPLARKITHSIQG 408
            Q  +    QAT M+  +G F +    + A   + +L+   + + V  P   K       
Sbjct: 259 DQQGSRWTLQATRMDGDVGLFPIQPDQMQAVNPLLVLILVPIFDYVVYPALAKCGTRF-- 316

Query: 409 MTSLQRVGTGLIFSVIAMIVSAVIEQQRRET 439
            TSL+++  G++ + +A  V+A+++ +   T
Sbjct: 317 -TSLRKMAVGMLLAALAFAVAALLQNKINPT 346

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 641

>gnl|CDD|233189 TIGR00924, yjdL_sub1_fam, amino acid/peptide transporter (Peptide:H+ symporter), bacterial

 Score = 82.6 bits (204), Expect = 1e-16
 Identities = 90/488 (18%), Positives = 167/488 (34%), Gaps = 101/488 (20%)

Query: 38  ILGTELSERICAMGISMNLVTYLV--GDLHLSSAKSATIVTNFMGTLNLLGLLGGFLADA 95
           +   EL ER    G+   L  YLV    L  S  ++  I   +   + LL  +G +  D 
Sbjct: 15  LFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDR 74

Query: 96  KLGRYLTVAIFASVTALVVGLLTSATSIPSMRPPQCDDYRRKHHQCIEANGKQLAMLYAA 155
             G   T+ +   V  L++G    A SI                           +++  
Sbjct: 75  VWGTKKTMVLGGIV--LMLGHFMLAMSIYP------------------------DLIFYG 108

Query: 156 LYTIALGGGGIKSNVSGFGSDQFDTSD-PKEEKAMIFFFNRFYFAISIGSLFAVIVLVYV 214
           L TIA+G G  K+N S      ++  D P+ +      F  FY +I+IGS  + ++   +
Sbjct: 109 LGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGG----FTLFYMSINIGSFISPLLAGVI 164

Query: 215 QDNVGRGWGYGISAGTMVVAAAILLIGTPWYRFKKPRGSPLTVIWRVLLLAWKKRSHPYP 274
            +N G   G+ ++A  MV+       G                             H   
Sbjct: 165 AENYGYHVGFNLAAVGMVIGLLTFFAG----------------------------RHMLR 196

Query: 275 DHPSLLNEYQNAKVPHTEKFKCLDKAAIIEDNAVA-------NENKNNSWIVSTVT---- 323
           D  S+ +      +    K       A++   A+        +     + ++ TVT    
Sbjct: 197 DIGSVPDP-----LSGQGKTYGKLLLALLAALALVFFCAWLMHHVVIANILLMTVTLAVI 251

Query: 324 -------------EVEEVKMVLKLLPIWATCILFWTVYSQM-TTFTVEQATFMNRKIGSF 369
                         V   KM    + ++   ++FW +Y+QM T+        M+ ++   
Sbjct: 252 IFFFRLAFKPRLDAVARNKMYA-YIVLFLEAVVFWVLYAQMPTSLNFFADNNMHHEMLGM 310

Query: 370 TVPSGSLSAFLFITILLFTSLNEKVFVPLARKITHSIQGMTSLQRVGTGLIFSVIAMIVS 429
           +VP     +     +++ + +   ++  L RK        T L+     L      +  +
Sbjct: 311 SVPVIWFQSLNPFWVVVGSPVLAMIWTRLGRKGK---DPTTPLKFTLGMLFCGASFLTFA 367

Query: 430 AVIEQQRRETSVQKHIQISAFWLVPQYFLVGAGEAFVYVGQLEFFIREGPERMKSMSTGL 489
           A I               S +++V  Y     GE  +    L ++ +  P+R+     G+
Sbjct: 368 ASIWFADAGG------LTSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQRLMGQMLGM 421

Query: 490 FLSAISMG 497
           +  A +MG
Sbjct: 422 WFLAQAMG 429

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists [Transport and binding proteins, Amino acids, peptides and amines]. Length = 475

>gnl|CDD|181969 PRK09584, tppB, putative tripeptide transporter permease; Reviewed

 Score = 64.8 bits (158), Expect = 5e-11
 Identities = 51/197 (25%), Positives = 86/197 (43%), Gaps = 29/197 (14%)

Query: 37  LILGTELSERICAMGISMNLVTYLVGDLHLSSAKSATIVTNFMGTLNLLGLLGGFLADAK 96
           LI   EL ER    G+   +  YLV  L +S A S T+ ++F   +  L  +GG+L D  
Sbjct: 25  LIFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKV 84

Query: 97  LGRYLTVAIFASVTALVVGLLTSATSIPSMRPPQCDDYRRKHHQCIEANGKQLAMLYAAL 156
           LG    + + A V A+   L+                           +G    ++Y  +
Sbjct: 85  LGTKRVIMLGAIVLAIGYALVA-------------------------WSGHDAGIVYMGM 119

Query: 157 YTIALGGGGIKSNVSGFGSDQFDTSDPKEEKAMIFFFNRFYFAISIGSLFAVIVLVYVQD 216
            TIA+G G  K+N S   S  ++  DP+ + A    F  +Y +I+IGS F+++   ++  
Sbjct: 120 ATIAVGNGLFKANPSSLLSTCYEKDDPRLDGA----FTMYYMSINIGSFFSMLATPWLAA 175

Query: 217 NVGRGWGYGISAGTMVV 233
             G    + +S   M++
Sbjct: 176 KYGWSVAFALSVVGMLI 192

Length = 500

>gnl|CDD|237971 PRK15462, PRK15462, dipeptide/tripeptide permease D; Provisional

 Score = 55.7 bits (134), Expect = 3e-08
 Identities = 50/204 (24%), Positives = 86/204 (42%), Gaps = 29/204 (14%)

Query: 38  ILGTELSERICAMGISMNLVTYLVGDLHLSSAKSATIVTNFMGTLNLLGLLGGFLADAKL 97
           ++  ++ E     G+   L+ YL   L      +  + + +   + +  +LGGFLAD  L
Sbjct: 14  VVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVL 73

Query: 98  GRYLTVAIFASVTALVVGLLTSATSIPSMRPPQCDDYRRKHHQCIEANGKQLAMLYAALY 157
           G  + V + A + A+   +L ++   PS                          LY +L 
Sbjct: 74  GNRMAVMLGALLMAIGHVVLGASEIHPSF-------------------------LYLSLA 108

Query: 158 TIALGGGGIKSNVSGFGSDQFDTSDPKEEKAMIFFFNRFYFAISIGSLFAVIVLVYVQDN 217
            I  G G  KSNVS    + ++ +DP+ +      F+  Y A ++GS+ A I   Y Q+ 
Sbjct: 109 IIVCGYGLFKSNVSCLLGELYEPTDPRRDGG----FSLMYAAGNVGSIIAPIACGYAQEE 164

Query: 218 VGRGWGYGISAGTMVVAAAILLIG 241
                G+G++A  M+    I L G
Sbjct: 165 YSWAMGFGLAAVGMIAGLVIFLCG 188

Length = 493

>gnl|CDD|182306 PRK10207, PRK10207, dipeptide/tripeptide permease B; Provisional

 Score = 50.6 bits (121), Expect = 2e-06
 Identities = 49/198 (24%), Positives = 84/198 (42%), Gaps = 29/198 (14%)

Query: 37  LILGTELSERICAMGISMNLVTYLVGDLHLSSAKSATIVTNFMGTLNLLGLLGGFLADAK 96
           +I   EL ER    G+   L  + V  L  S  ++      F   +  L  +GG++ D  
Sbjct: 18  MIFFVELWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHL 77

Query: 97  LGRYLTVAIFASVTALVVGLLTSATSIPSMRPPQCDDYRRKHHQCIEANGKQLAMLYAAL 156
           LG   T+ + A V  L +G   +  S+  ++P                      +++ AL
Sbjct: 78  LGTKRTIVLGAIV--LAIGYFMTGMSL--LKP---------------------DLIFIAL 112

Query: 157 YTIALGGGGIKSNVSGFGSDQFDTSDPKEEKAMIFFFNRFYFAISIGSLFAVIVLVYVQD 216
            TIA+G G  K+N +   S  +   DP+ + A    F  FY +I+IGSL ++ +   + D
Sbjct: 113 GTIAVGNGLFKANPASLLSKCYPPKDPRLDGA----FTLFYMSINIGSLISLSLAPVIAD 168

Query: 217 NVGRGWGYGISAGTMVVA 234
             G    Y +    +++A
Sbjct: 169 KFGYSVTYNLCGAGLIIA 186

Length = 489

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 46.2 bits (110), Expect = 3e-05
 Identities = 41/192 (21%), Positives = 77/192 (40%), Gaps = 33/192 (17%)

Query: 49  AMGISMNLVTYLVGDLHLSSAKSATIVTNFMGTLNLLGLLGGFLADAKLGRYLTVAIFAS 108
             G+    +  L  DL LS++++  IV+ F     L  LL G+L+D + GR   + +   
Sbjct: 14  DRGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSD-RFGRRRVLLLGLL 72

Query: 109 VTALVVGLLTSATSIPSMRPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKS 168
           + AL   LL  A+S+                           +L    + + LGGG +  
Sbjct: 73  LFALGSLLLAFASSLW--------------------------LLLVGRFLLGLGGGALYP 106

Query: 169 NVSGFGSDQFDTSDPKEEKAMIFFFNRFYFAISIGSLFAVIVLVYVQDNVGRGWGYGISA 228
             +   ++ F    P +E+        F     +G+L   ++   + +++G  W + I A
Sbjct: 107 AAAALIAEWF----PPKERG--RALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILA 160

Query: 229 GTMVVAAAILLI 240
              ++ A +LL 
Sbjct: 161 ILGLLLALLLLF 172

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 41.9 bits (99), Expect = 7e-04
 Identities = 30/215 (13%), Positives = 70/215 (32%), Gaps = 36/215 (16%)

Query: 334 LLPIWATCILFWTVYSQMTTFTVEQATFMNRKIGSFTVPSGSLSAFLFITILLFTSLNEK 393
           L  +    + F+ +             ++   +G     +G L +   +  +L       
Sbjct: 174 LRLLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGAL---- 229

Query: 394 VFVPLARKITHSIQGMTSLQRVGTGLIFSVIAMIVSAVIEQQRRETSVQKHIQISAFWLV 453
           +   L+ ++      +        GL+ + + +++ A+                S   L+
Sbjct: 230 LGGLLSDRLGRRRLLLL------IGLLLAALGLLLLALA--------------PSLALLL 269

Query: 454 PQYFLVGAGEAFVYVGQLEFFIREGPERMKSMSTGLFLSAISMGMFVSSMLVSIVDKITN 513
               L+G G  F +   L       P   +  ++GLF +  S+G  +  +L  ++     
Sbjct: 270 VALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGG 329

Query: 514 KHWLRSNLNKGKLNNFYWLLAVLGLLNFMVFLFFA 548
              +            + +LA L LL  ++ L   
Sbjct: 330 YGGV------------FLILAALALLAALLLLLLP 352

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	573
KOG1237	571	consensus H+/oligopeptide symporter [Amino acid tr	100.0
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	100.0
PRK10207	489	dipeptide/tripeptide permease B; Provisional	100.0
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	100.0
PRK15462	493	dipeptide/tripeptide permease D; Provisional	100.0
PRK09584	500	tppB putative tripeptide transporter permease; Rev	100.0
PRK03545	390	putative arabinose transporter; Provisional	99.96
PRK05122	399	major facilitator superfamily transporter; Provisi	99.95
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.95
PRK12382	392	putative transporter; Provisional	99.95
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.95
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.95
PRK11663	434	regulatory protein UhpC; Provisional	99.95
PRK10504	471	putative transporter; Provisional	99.95
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.94
PRK10054	395	putative transporter; Provisional	99.94
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.94
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.94
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.94
PRK10489	417	enterobactin exporter EntS; Provisional	99.94
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.94
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.94
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.94
PRK10642	490	proline/glycine betaine transporter; Provisional	99.94
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.94
PRK09874	408	drug efflux system protein MdtG; Provisional	99.94
PRK09705	393	cynX putative cyanate transporter; Provisional	99.94
TIGR00900	365	2A0121 H+ Antiporter protein.	99.94
TIGR00893	399	2A0114 d-galactonate transporter.	99.93
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	99.93
PRK12307	426	putative sialic acid transporter; Provisional	99.93
PRK09952	438	shikimate transporter; Provisional	99.93
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.93
TIGR00891	405	2A0112 putative sialic acid transporter.	99.93
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.93
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.93
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.93
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.93
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.93
PLN00028	476	nitrate transmembrane transporter; Provisional	99.93
PRK03699	394	putative transporter; Provisional	99.93
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.93
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.93
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.93
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.93
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.92
PRK10091	382	MFS transport protein AraJ; Provisional	99.92
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.92
TIGR00895	398	2A0115 benzoate transport.	99.92
PRK03633	381	putative MFS family transporter protein; Provision	99.92
PRK03893	496	putative sialic acid transporter; Provisional	99.92
PRK15011	393	sugar efflux transporter B; Provisional	99.92
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.92
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	99.92
PRK11652	394	emrD multidrug resistance protein D; Provisional	99.92
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	99.91
PRK15075	434	citrate-proton symporter; Provisional	99.91
TIGR00898	505	2A0119 cation transport protein.	99.91
PRK15403	413	multidrug efflux system protein MdtM; Provisional	99.91
PRK11195	393	lysophospholipid transporter LplT; Provisional	99.91
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.91
PRK09528	420	lacY galactoside permease; Reviewed	99.91
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.9
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.9
PRK11043	401	putative transporter; Provisional	99.9
KOG2532	466	consensus Permease of the major facilitator superf	99.9
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.9
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	99.9
PRK10133	438	L-fucose transporter; Provisional	99.9
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.89
KOG1330	493	consensus Sugar transporter/spinster transmembrane	99.89
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.89
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.89
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.88
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.88
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.88
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	99.88
PRK11010	491	ampG muropeptide transporter; Validated	99.88
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.88
KOG0254	513	consensus Predicted transporter (major facilitator	99.88
KOG0569	485	consensus Permease of the major facilitator superf	99.87
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.87
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.87
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.86
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	99.85
PRK11902	402	ampG muropeptide transporter; Reviewed	99.84
TIGR00901	356	2A0125 AmpG-related permease.	99.83
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	99.83
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	99.82
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	99.8
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	99.8
PRK09669	444	putative symporter YagG; Provisional	99.79
KOG2533	495	consensus Permease of the major facilitator superf	99.78
PRK09848	448	glucuronide transporter; Provisional	99.78
PRK10429	473	melibiose:sodium symporter; Provisional	99.77
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	99.77
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	99.77
KOG2615	451	consensus Permease of the major facilitator superf	99.77
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	99.77
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	99.77
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	99.76
KOG3764	464	consensus Vesicular amine transporter [Intracellul	99.76
TIGR00805	633	oat sodium-independent organic anion transporter.	99.76
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	99.76
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	99.76
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	99.76
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.75
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	99.75
TIGR00788	468	fbt folate/biopterin transporter. The only functio	99.74
PTZ00207	591	hypothetical protein; Provisional	99.73
PF13347	428	MFS_2: MFS/sugar transport protein	99.71
PRK11462	460	putative transporter; Provisional	99.68
COG2211	467	MelB Na+/melibiose symporter and related transport	99.64
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	99.62
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	99.55
PRK10642	490	proline/glycine betaine transporter; Provisional	99.49
PRK15011	393	sugar efflux transporter B; Provisional	99.47
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.47
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	99.47
KOG2563	480	consensus Permease of the major facilitator superf	99.47
KOG2325	488	consensus Predicted transporter/transmembrane prot	99.46
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.45
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.43
PRK05122	399	major facilitator superfamily transporter; Provisi	99.41
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.41
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.39
PRK09952	438	shikimate transporter; Provisional	99.39
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.39
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.38
PRK03699	394	putative transporter; Provisional	99.38
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.37
PRK09705	393	cynX putative cyanate transporter; Provisional	99.36
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.36
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.35
PRK09528	420	lacY galactoside permease; Reviewed	99.35
PRK09874	408	drug efflux system protein MdtG; Provisional	99.34
TIGR00893	399	2A0114 d-galactonate transporter.	99.33
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	99.33
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	99.33
PRK03545	390	putative arabinose transporter; Provisional	99.33
PRK03893	496	putative sialic acid transporter; Provisional	99.33
PRK11663	434	regulatory protein UhpC; Provisional	99.32
PRK10489	417	enterobactin exporter EntS; Provisional	99.32
PRK12382	392	putative transporter; Provisional	99.31
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.31
PRK03633	381	putative MFS family transporter protein; Provision	99.29
COG2270	438	Permeases of the major facilitator superfamily [Ge	99.28
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	99.28
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.27
TIGR00891	405	2A0112 putative sialic acid transporter.	99.27
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.27
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.24
PRK15075	434	citrate-proton symporter; Provisional	99.23
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.22
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.22
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.21
KOG2816	463	consensus Predicted transporter ADD1 (major facili	99.21
PRK11010	491	ampG muropeptide transporter; Validated	99.21
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.21
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	99.2
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.19
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	99.16
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	99.16
TIGR00900	365	2A0121 H+ Antiporter protein.	99.15
PRK10504	471	putative transporter; Provisional	99.14
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.14
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.13
PLN00028	476	nitrate transmembrane transporter; Provisional	99.12
PRK11902	402	ampG muropeptide transporter; Reviewed	99.12
PRK10091	382	MFS transport protein AraJ; Provisional	99.1
PRK12307	426	putative sialic acid transporter; Provisional	99.1
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.1
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.09
KOG3626	735	consensus Organic anion transporter [Secondary met	99.08
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.08
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	99.08
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.07
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.07
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.07
TIGR00895	398	2A0115 benzoate transport.	99.06
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	99.04
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.04
KOG3762	618	consensus Predicted transporter [General function	99.04
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.03
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.02
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.01
PRK10054	395	putative transporter; Provisional	99.0
PRK14995	495	methyl viologen resistance protein SmvA; Provision	98.99
PRK10213	394	nepI ribonucleoside transporter; Reviewed	98.99
KOG3098	461	consensus Uncharacterized conserved protein [Funct	98.99
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	98.96
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	98.95
COG2270	438	Permeases of the major facilitator superfamily [Ge	98.94
PRK10133	438	L-fucose transporter; Provisional	98.94
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	98.93
PRK11646	400	multidrug resistance protein MdtH; Provisional	98.92
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	98.91
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	98.9
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	98.89
PRK11195	393	lysophospholipid transporter LplT; Provisional	98.87
PF13347	428	MFS_2: MFS/sugar transport protein	98.84
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	98.83
PRK09848	448	glucuronide transporter; Provisional	98.83
KOG2532	466	consensus Permease of the major facilitator superf	98.82
TIGR00901	356	2A0125 AmpG-related permease.	98.8
TIGR00898	505	2A0119 cation transport protein.	98.78
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	98.77
PRK11043	401	putative transporter; Provisional	98.75
PRK10473	392	multidrug efflux system protein MdtL; Provisional	98.75
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	98.73
KOG0569	485	consensus Permease of the major facilitator superf	98.72
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	98.72
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	98.72
PRK10429	473	melibiose:sodium symporter; Provisional	98.69
KOG1330	493	consensus Sugar transporter/spinster transmembrane	98.68
KOG4332	454	consensus Predicted sugar transporter [Carbohydrat	98.64
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	98.63
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	98.63
PRK09669	444	putative symporter YagG; Provisional	98.55
PRK11652	394	emrD multidrug resistance protein D; Provisional	98.51
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	98.51
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	98.5
KOG0637	498	consensus Sucrose transporter and related proteins	98.5
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	98.43
COG2211	467	MelB Na+/melibiose symporter and related transport	98.4
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	98.36
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	98.36
COG0477	338	ProP Permeases of the major facilitator superfamil	98.35
KOG3764	464	consensus Vesicular amine transporter [Intracellul	98.34
PRK15403	413	multidrug efflux system protein MdtM; Provisional	98.32
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	98.28
PRK11462	460	putative transporter; Provisional	98.24
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	98.2
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	98.18
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	98.17
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	98.16
PRK09584	500	tppB putative tripeptide transporter permease; Rev	98.16
PRK10207	489	dipeptide/tripeptide permease B; Provisional	98.11
PF12832	77	MFS_1_like: MFS_1 like family	98.06
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	98.05
PRK15462	493	dipeptide/tripeptide permease D; Provisional	98.04
KOG3762	618	consensus Predicted transporter [General function	98.03
TIGR00788	468	fbt folate/biopterin transporter. The only functio	98.03
KOG2533	495	consensus Permease of the major facilitator superf	98.01
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	97.99
TIGR00805	633	oat sodium-independent organic anion transporter.	97.95
KOG3574	510	consensus Acetyl-CoA transporter [Inorganic ion tr	97.94
PTZ00207	591	hypothetical protein; Provisional	97.84
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	97.83
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	97.82
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	97.78
KOG0254	513	consensus Predicted transporter (major facilitator	97.75
KOG2615	451	consensus Permease of the major facilitator superf	97.75
KOG2325	488	consensus Predicted transporter/transmembrane prot	97.6
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	97.44
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	97.35
KOG2816	463	consensus Predicted transporter ADD1 (major facili	97.19
KOG2563	480	consensus Permease of the major facilitator superf	97.19
PF06779	85	DUF1228: Protein of unknown function (DUF1228); In	96.98
PRK03612	521	spermidine synthase; Provisional	96.72
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	96.7
KOG3626	735	consensus Organic anion transporter [Secondary met	96.42
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	96.14
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	96.01
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	95.77
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	95.74
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	94.97
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	94.81
KOG1479	406	consensus Nucleoside transporter [Nucleotide trans	94.62
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	94.57
KOG3097	390	consensus Predicted membrane protein [Function unk	94.47
KOG3098	461	consensus Uncharacterized conserved protein [Funct	93.81
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	93.43
PF13000	544	Acatn: Acetyl-coenzyme A transporter 1; InterPro:	93.37
KOG3810	433	consensus Micronutrient transporters (folate trans	92.85
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	92.84
PF03219	491	TLC: TLC ATP/ADP transporter; InterPro: IPR004667	92.44
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	92.2
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	92.14
KOG0637	498	consensus Sucrose transporter and related proteins	90.19
PF07672	267	MFS_Mycoplasma: Mycoplasma MFS transporter; InterP	89.44
KOG4332	454	consensus Predicted sugar transporter [Carbohydrat	87.12
KOG3880	409	consensus Predicted small molecule transporter inv	87.03
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	85.01
COG0477	338	ProP Permeases of the major facilitator superfamil	82.16

>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]

Probab=100.00  E-value=6.1e-42  Score=368.28  Aligned_cols=542  Identities=46%  Similarity=0.753  Sum_probs=477.3

Q ss_pred             ccccccccCCCCcccc---cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhH
Q 008231           12 EAENVVDFRGNPVDRS---KTGGWLAAGLILGTELSERICAMGISMNLVTYLVGDLHLSSAKSATIVTNFMGTLNLLGLL   88 (573)
Q Consensus        12 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~   88 (573)
                      ++....+.++++..+.   +++.|++...++..+.+++.++|++..++..|+.+.+|.+...+...+..+.......+++
T Consensus        13 ~~~~~~d~~~~~~~~~~~~~~g~~~s~~~il~~e~~e~~a~~g~~~nlv~ylt~~~~~~~~~aa~~v~~f~G~~~~~~l~   92 (571)
T KOG1237|consen   13 HDFTSVDYRGPLLGSSIAFKTGGWLSAPFILGNEVLERLAFFGLVSNLVTYLTLELHASGGGAANNVNAFGGTQFLLPLL   92 (571)
T ss_pred             cccceeeccCCcccccccceechhHhHHHHHHHHHHHHHhHhcchhHHHHHHHHHhccchHHHHHHHHHHhhHHHHHHHH
Confidence            3334555555665554   7889999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhhccchhHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCccccccccccccchhhHHHHHHHHHHHHHhcCccccc
Q 008231           89 GGFLADAKLGRYLTVAIFASVTALVVGLLTSATSIPSMRPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKS  168 (573)
Q Consensus        89 ~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~  168 (573)
                      +++++|.|.||.+++.++.++..+|..+..+++..+.+.++.| .+...+..|+.+.......++.++.+.++|.|+..|
T Consensus        93 g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~~-~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~  171 (571)
T KOG1237|consen   93 GAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPFMC-KFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRP  171 (571)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccc-cCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCC
Confidence            9999999999999999999999999999999988898888887 333444578889988999999999999999999999


Q ss_pred             cccccccCCCCCCCchHHHhHHHHHHHHHHHHHhhhHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHHHHhcCcccccc
Q 008231          169 NVSGFGSDQFDTSDPKEEKAMIFFFNRFYFAISIGSLFAVIVLVYVQDNVGRGWGYGISAGTMVVAAAILLIGTPWYRFK  248 (573)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~  248 (573)
                      +..++.+|++++..+.++..+...++++++..++|..++..+..++.++.||.+.|.++.+.++++.++++...+.++.+
T Consensus       172 ~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~vyiq~~~~w~lgf~i~~~~~~lai~iF~~g~~~y~~~  251 (571)
T KOG1237|consen  172 CLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTVLVYIQDNVGWKLGFGIPTVLNALAILIFLPGFPFYRYK  251 (571)
T ss_pred             cchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHHHHhhhhcccceeeccHHHHHHHHHHHHHHcCceeEEee
Confidence            99999999999777666666779999999999999999999999999999999999999999999999989999999988


Q ss_pred             CCCCCchhHHHHHHHHHHhccCCCCCCCCCcchhccc--ccCCCCCccchhhhhhhhhhhhhhccccCCcccccchhhHH
Q 008231          249 KPRGSPLTVIWRVLLLAWKKRSHPYPDHPSLLNEYQN--AKVPHTEKFKCLDKAAIIEDNAVANENKNNSWIVSTVTEVE  326 (573)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  326 (573)
                      ++.+++.+.+.+++..+.++++.+.+..+.......+  ....+.+..++++++...............+|+.|...+++
T Consensus       252 ~p~gsp~t~i~~Vlvaa~~k~~~~~~~~~~~~~~~~~~~~~~~~t~~f~~l~kaa~~~~~~~~~~~~~~~w~lct~~~Ve  331 (571)
T KOG1237|consen  252 KPRGSPKTRIGQVLVAAAFKRKAVVSLDPEELYYDCTDSVAIEGTKPFRFLDKAALKTSDDLKDGLDANPWRLCTVTQVE  331 (571)
T ss_pred             CCCCCchhHHHHHHHHHHHHHhccCCCcchhccccccccccccCCcccchhhHhhccCCcccccccccCCccCCCceehh
Confidence            8999999999999999999888877766444412111  22233566788888887643322223456789999999999


Q ss_pred             HHHHHHhHHHHHHHHHHHHHHhhcccchhhhhhhcccccccc-ceecccccchhhHHHHHHHHHhhhhhhhhhhcccccc
Q 008231          327 EVKMVLKLLPIWATCILFWTVYSQMTTFTVEQATFMNRKIGS-FTVPSGSLSAFLFITILLFTSLNEKVFVPLARKITHS  405 (573)
Q Consensus       327 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~r~~~~  405 (573)
                      +.|.+++.+++|...+.++..+.|+.+++..|...++++.++ +.+|++.++.+..+..++..|+++++..|+.||..++
T Consensus       332 e~K~~lr~~Pi~~~~i~~~~~~aq~~t~~v~Q~~~mdr~~~~~f~ip~asl~~f~~~~~~~~iplydr~~vP~~~~~t~~  411 (571)
T KOG1237|consen  332 EVKAVLRLLPIWLTTIIYSTVYAQMVTFFVLQATTMDRHLGSNFKIPAASLQVFILLSILIFIPLYDRVIVPFARKLTGN  411 (571)
T ss_pred             hhhhhhhhhHHHHHHHHHHHHHHhhhhheehhhhhcCCCCCCCeEeCchhHHHHHHHHHHhhhhhcceeehhhhhhhcCC
Confidence            999999999999999999999999999999999999999986 9999999999999999999999999999999999886


Q ss_pred             cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc---CCcccchhHHHHHHHHHHHHHHhhhhhhhheeecccCchh
Q 008231          406 IQGMTSLQRVGTGLIFSVIAMIVSAVIEQQRRETSVQ---KHIQISAFWLVPQYFLVGAGEAFVYVGQLEFFIREGPERM  482 (573)
Q Consensus       406 ~~~~~~~~~~~~g~~~~~i~~i~~~~~~~~~~~~~~~---~~~~~~~~~lv~~~~l~g~~~~~~~~~~~~~~~~~~p~~~  482 (573)
                      ..+.+.++++.+|+++..+++...+..+..+.+.+.+   ...+++++|++++++++|+++.+......++..+.+|+++
T Consensus       412 ~~~~t~lqrig~G~~~si~sm~~aa~vE~krl~~~~~~~~~~~~mSi~W~iPQyvLig~~Evf~~vg~lEFfY~qaP~sM  491 (571)
T KOG1237|consen  412 PFGITPLQRIGIGLVLSILSMAVAGIVEAKRLKTAVSLLVETNPMSILWQIPQYVLLGAGEVFTSVGGLEFFYSQAPESM  491 (571)
T ss_pred             CCCCChhheeeccchHHHHHHHHHHHHHHHHhhhhhhccCCCCCeeHHHHHHHHHHHHHHHHHHhhhhHHHhHhhCCHHH
Confidence            6678999999999999999999999999887666542   2367899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhh--ccCccc-cccccchhhHHHHHHHHHHHHHHHHHHHHHhhcchh
Q 008231          483 KSMSTGLFLSAISMGMFVSSMLVSIVDKIT--NKHWLR-SNLNKGKLNNFYWLLAVLGLLNFMVFLFFAMKHQYN  554 (573)
Q Consensus       483 rg~~~gi~~~~~~lg~~ig~~~~~~i~~~~--~~~w~~-~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~  554 (573)
                      |+.+++++.+..++|+.++.+++..+...+  .++|++ +++|.+++..+||+++....+....+....++++++
T Consensus       492 kS~~~al~l~t~a~G~~lss~Lv~~v~~~t~~~~~w~~~~~ln~~~ld~Fy~lla~~~~~n~~~~~~~~~~y~~~  566 (571)
T KOG1237|consen  492 KSVATALWLLTVAVGNYLSSVLVSLVQFSTGKAAEWLGFANLNKGRLDYFYWLLAVYSAVNFLYFLICAKRYDYK  566 (571)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccCChhHhhhhHHHHHHHHHHHHHhhhhhheEEEEEeeeec
Confidence            999999999999999999999999998877  358999 999999999999999999999988877776665554

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=100.00  E-value=5.8e-38  Score=321.04  Aligned_cols=460  Identities=22%  Similarity=0.317  Sum_probs=351.9

Q ss_pred             cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC----CCchhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHH
Q 008231           28 KTGGWLAAGLILGTELSERICAMGISMNLVTYLVGDLH----LSSAKSATIVTNFMGTLNLLGLLGGFLADAKLGRYLTV  103 (573)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~----~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~  103 (573)
                      ..+++|.++.++.+++.|+++||++...+..|+..+++    +|++++.-+.+.|....++.++++||++||++|+|+++
T Consensus        16 ~f~~Pr~l~~if~vE~WERFsyYGmraiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI   95 (498)
T COG3104          16 FFGQPRGLYLIFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTI   95 (498)
T ss_pred             cCCCCchHHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHH
Confidence            34577899999999999999999999999999999888    99999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhccCCCCCCCCCccccccccccccchhhHHHHHHHHHHHHHhcCccccccccccccCCCCCCCc
Q 008231          104 AIFASVTALVVGLLTSATSIPSMRPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDP  183 (573)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~  183 (573)
                      ..|.++.++|.++++..+.                        .....++++.+++++|.|.++|+..++++|++|++++
T Consensus        96 ~lGail~~iGh~~L~~~~~------------------------~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~Dp  151 (498)
T COG3104          96 VLGAILMAIGHLVLAISSV------------------------SGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDP  151 (498)
T ss_pred             HHHHHHHHHHHHHHhcccc------------------------ccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCc
Confidence            9999999999999987530                        1345899999999999999999999999999999998


Q ss_pred             hHHHhHHHHHHHHHHHHHhhhHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHHHHhcCccccccC--CCCCchh-----
Q 008231          184 KEEKAMIFFFNRFYFAISIGSLFAVIVLVYVQDNVGRGWGYGISAGTMVVAAAILLIGTPWYRFKK--PRGSPLT-----  256 (573)
Q Consensus       184 ~~~~~r~~~~~~~~~~~~ig~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-----  256 (573)
                      +    |..+++++|++.|+|+.++|++.+++.+++||+..|.++++.+.++++.++..+++.....  ++..+.+     
T Consensus       152 r----rD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~f~~~~r~~~~~~~~~~~~~~~~~~~~  227 (498)
T COG3104         152 R----RDGGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMIIGLVIFLLGRRHVKGIGGVPDPNPLSFNFLL  227 (498)
T ss_pred             c----cCCCccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHccchhcCCCCCCCccchhhhhhh
Confidence            7    9999999999999999999999999999999999999999999999888877776554332  1111110     


Q ss_pred             -HHHHHHHHHHhccCCCCCCCCCcchhcccccCCCCCccchh-hhhhhhhhhhhhccccCCcccccchhhHHHHHHHHhH
Q 008231          257 -VIWRVLLLAWKKRSHPYPDHPSLLNEYQNAKVPHTEKFKCL-DKAAIIEDNAVANENKNNSWIVSTVTEVEEVKMVLKL  334 (573)
Q Consensus       257 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  334 (573)
                       .....+......-          +..     ....+..... ....+......-.+  ...+   .+.. +++|+++..
T Consensus       228 ~~~~~~~~~~~~~~----------~~~-----~l~~~~~~~~~~~~~i~~~~~~~~~--~~~~---~~~~-~er~r~~~~  286 (498)
T COG3104         228 PVLGGLVVMILAAL----------LTL-----LLNQNTFSGVLLVISILIAIIYFAE--AFRS---PKVF-DERRRLLAA  286 (498)
T ss_pred             hhHHHHHHHHHHHH----------HHH-----HHHHHHHHHHHHHHHHHHHHHHHHH--Hhcc---CccH-HHHHHHHHH
Confidence             0000000000000          000     0000000000 00000000000000  0111   2223 678889999


Q ss_pred             HHHHHHHHHHHHHhhcccchhhhhhhc-cccccccceecccccchhhHHHHHHHHHhhhhhhhhhhcccccccCCCchHH
Q 008231          335 LPIWATCILFWTVYSQMTTFTVEQATF-MNRKIGSFTVPSGSLSAFLFITILLFTSLNEKVFVPLARKITHSIQGMTSLQ  413 (573)
Q Consensus       335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~  413 (573)
                      +++++...++|..+.|+.+.+..+..+ .+++..++++++++.+++|++.+++++|++++++.|+.++..    .++...
T Consensus       287 ~~Lfl~~~iFW~~~~Q~~ssl~~~a~~~v~~~~~g~~vp~~~fQslNp~~Iii~~pI~a~l~~~l~~~~~----~ps~~~  362 (498)
T COG3104         287 IPLFLFAVIFWALYEQMGSSLNLYADRNVNRQIFGFEVPPAWFQSLNPFFIILFSPILAALWTKLGRGNK----QPSTPI  362 (498)
T ss_pred             HHHHHHHHHHHHHHHhccchHHHHHHHhhcccccceecCHHHHHhhCHHHHHHHHHHHHHHHhHhhcCCC----CCCcch
Confidence            999999999999999999977766543 345545689999999999999999999999999988776652    367788


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcccCCcccchhHHHHHHHHHHHHHHhhhhhhhheeecccCchhHHHHHHHHHHH
Q 008231          414 RVGTGLIFSVIAMIVSAVIEQQRRETSVQKHIQISAFWLVPQYFLVGAGEAFVYVGQLEFFIREGPERMKSMSTGLFLSA  493 (573)
Q Consensus       414 ~~~~g~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~lv~~~~l~g~~~~~~~~~~~~~~~~~~p~~~rg~~~gi~~~~  493 (573)
                      ++..|+++++.+++++.........    +..+.+.+|+++.++++++||.+.+|...+++++.+|++..+..++++...
T Consensus       363 KFalGl~l~g~~fl~l~~~~~~~~~----~~~~~s~~~lil~y~l~s~gEL~iSpvGLs~~t~laP~~~~s~~ma~wfLt  438 (498)
T COG3104         363 KFALGLILAGLGFLILLLAGIWFGG----PSGLVSVWWLVLSYVLQSFGELFISPVGLSMVTKLAPPALKSFIMAMWFLT  438 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcC----CCCCcCHHHHHHHHHHHHHHHHHhCHHHHHHHHHhChHHHHHHHHHHHHHH
Confidence            8999999999999998887443221    245678999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhhhccCccccccccchhhHHHHHHHHHHHHHHHHHHHHHhh
Q 008231          494 ISMGMFVSSMLVSIVDKITNKHWLRSNLNKGKLNNFYWLLAVLGLLNFMVFLFFAMK  550 (573)
Q Consensus       494 ~~lg~~ig~~~~~~i~~~~~~~w~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~  550 (573)
                      ...|+.++..+.+...+..      +..+......+|+.++...++..+......+.
T Consensus       439 ~a~~~~l~g~va~~~~~~~------~~~~~~~~~~~F~~~g~v~i~~~~~~~~~~~~  489 (498)
T COG3104         439 VAAGQTLGGQVAGLTAVTD------PAYTAFIEGRVFGTIGVVAIVIGILLLLLSPK  489 (498)
T ss_pred             HHHHHHhhceecccccccc------hhhhhhhhhhhHHHHHHHHHHHHHHHHHhhHH
Confidence            9999999888877321100      00011223457888888888777776666554

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=100.00  E-value=5.8e-35  Score=314.29  Aligned_cols=461  Identities=17%  Similarity=0.209  Sum_probs=327.2

Q ss_pred             CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHH
Q 008231           29 TGGWLAAGLILGTELSERICAMGISMNLVTYLVGDLHLSSAKSATIVTNFMGTLNLLGLLGGFLADAKLGRYLTVAIFAS  108 (573)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~  108 (573)
                      .+++|.++.+++.++.+++++|++.++++.|+++++|++..+++++.+.+....++..+++|+++||++||||+++++.+
T Consensus        10 ~~~p~~~~~~~~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~   89 (489)
T PRK10207         10 LQQPRPFFMIFFVELWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAI   89 (489)
T ss_pred             hcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHH
Confidence            35888999999999999999999999999999999999999999999999999999999999999993399999999999


Q ss_pred             HHHHHHHHHHhhccCCCCCCCCCccccccccccccchhhHHHHHHHHHHHHHhcCccccccccccccCCCCCCCchHHHh
Q 008231          109 VTALVVGLLTSATSIPSMRPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKA  188 (573)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (573)
                      +++++.++++++.+                         ....++++|+++|+|.|...|+..++++|++|+++++    
T Consensus        90 ~~~~g~~~~~~~~~-------------------------~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~----  140 (489)
T PRK10207         90 VLAIGYFMTGMSLL-------------------------KPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPR----  140 (489)
T ss_pred             HHHHHHHHHHHhcc-------------------------chhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchh----
Confidence            99999999988642                         1224668899999999999999999999999987632    


Q ss_pred             HHHHHHHHHHHHHhhhHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHHHHhcCcccccc--CCCCCchh--HHHH----
Q 008231          189 MIFFFNRFYFAISIGSLFAVIVLVYVQDNVGRGWGYGISAGTMVVAAAILLIGTPWYRFK--KPRGSPLT--VIWR----  260 (573)
Q Consensus       189 r~~~~~~~~~~~~ig~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~--~~~~----  260 (573)
                      |++++++++++.|+|..+||.+++++.+..||++.|++..+.++++.+.+...++..++.  ++++++.+  ....    
T Consensus       141 ~~~~~~~~~~~~nig~~~g~~l~g~l~~~~gw~~~F~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~  220 (489)
T PRK10207        141 LDGAFTLFYMSINIGSLISLSLAPVIADKFGYSVTYNLCGAGLIIALLVYFACRGMVKDIGSEPDHKPMSFSKLLLVLLG  220 (489)
T ss_pred             hhcchhHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHcchhhcccCCCCCccchhhhhHHHHHHH
Confidence            788999999999999999999999999999999999987665555555544444333222  12121111  1000    


Q ss_pred             HH--HHHHhccCCCCCCCCCcchhcccccCCCCCccchh-hhhhhhhhhhhhccccCCcccccchhhHHHHHHHHhHHHH
Q 008231          261 VL--LLAWKKRSHPYPDHPSLLNEYQNAKVPHTEKFKCL-DKAAIIEDNAVANENKNNSWIVSTVTEVEEVKMVLKLLPI  337 (573)
Q Consensus       261 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  337 (573)
                      ..  ......... .                 .+..... ...........-.++       .+.+.. .+++.+....+
T Consensus       221 ~~~~~~~~~~~~~-~-----------------~~~~~~~~~~~~~i~~~~f~~~~-------~~~~~~-~r~r~~~~~~l  274 (489)
T PRK10207        221 SVVMIFVCAWLMH-N-----------------VEVANLVLIVLSIVVTIIFFREA-------FKLDKT-GRNKMFVAFVL  274 (489)
T ss_pred             HHHHHHHHHHHHh-h-----------------hhHHHHHHHHHHHHHHHHHHHHH-------hcCCHH-HHHHHHHHHHH
Confidence            00  000000000 0                 0000000 000000000000000       011112 23344445556


Q ss_pred             HHHHHHHHHHhhcccchhhhhhh-ccccccccceecccccchhhHHHHHHHHHhhhhhhhhhhcccccccCCCchHHHHH
Q 008231          338 WATCILFWTVYSQMTTFTVEQAT-FMNRKIGSFTVPSGSLSAFLFITILLFTSLNEKVFVPLARKITHSIQGMTSLQRVG  416 (573)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~  416 (573)
                      ++....+|..+.|....+..+.. ..+....++.+++.++++++++..++..|+.+++.+|..+|..    .++...++.
T Consensus       275 ~~~~~~f~~~~~q~~~~l~l~~~~~~~~~~~G~~i~~~~~~~~n~~~iii~~pl~~~l~~rl~~r~~----~~~~~~k~~  350 (489)
T PRK10207        275 MLEAVVFYILYAQMPTSLNFFAINNVHHEILGFSINPVSFQALNPFWVVVASPILAGIYTHLGSKGK----DLSMPMKFT  350 (489)
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHhccccccceEECHHHHHhHhHHHHHHHHHHHHHHHHHHhhCCC----CCCcHHHHH
Confidence            77788888989888765555443 3555556778888899999999998999999998777665543    367888899


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcccCCcccchhHHHHHHHHHHHHHHhhhhhhhheeecccCchhHHHHHHHHHHHHHH
Q 008231          417 TGLIFSVIAMIVSAVIEQQRRETSVQKHIQISAFWLVPQYFLVGAGEAFVYVGQLEFFIREGPERMKSMSTGLFLSAISM  496 (573)
Q Consensus       417 ~g~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~lv~~~~l~g~~~~~~~~~~~~~~~~~~p~~~rg~~~gi~~~~~~l  496 (573)
                      .|+++.+++++.++........    .....+.+|+++.+++.++||.+.+|..++++.+.+|++.+|.++|++++.+.+
T Consensus       351 ~G~~l~~~~~~~~~~~~~~~~~----~~~~~s~~~~i~~~~l~g~Ge~~~~~~g~~~~~~~aP~~~~g~~~g~~~l~~~i  426 (489)
T PRK10207        351 LGMFLCSLGFLTAAAAGMWFAD----AQGLTSPWFIVLVYLFQSLGELFISALGLAMIAALVPQHLMGFILGMWFLTQAA  426 (489)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcC----CCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhChHHHHHHHHHHHHHHHHH
Confidence            9999999998766543211110    112356788999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhhccCccccccccchhhHHHHHHHHHHHHHHHHHHHHHhhcchh
Q 008231          497 GMFVSSMLVSIVDKITNKHWLRSNLNKGKLNNFYWLLAVLGLLNFMVFLFFAMKHQYN  554 (573)
Q Consensus       497 g~~ig~~~~~~i~~~~~~~w~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~  554 (573)
                      |+.++..+........+ ..-+. .....+..+|..+++.++++.+++++..+..++.
T Consensus       427 g~~lg~~l~~~~~~~~~-~~~~~-~~~~~~~~~f~~~~~~~~~~~v~~~~~~~~~~~~  482 (489)
T PRK10207        427 AFLLGGYVATFTAVPDN-ITDPL-ETLPVYTNVFGKIGLVTLGVAVVMALMVPWLNRM  482 (489)
T ss_pred             HHHHHHHHHHHhccccc-cccch-hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999998876632100 00000 0112345678888888888877777766654443

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=100.00  E-value=2e-34  Score=309.85  Aligned_cols=451  Identities=19%  Similarity=0.218  Sum_probs=325.7

Q ss_pred             CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--cCCCchhhhHHHHHHHHHHHHHHhHHHHHhhh-ccchhHHHHH
Q 008231           29 TGGWLAAGLILGTELSERICAMGISMNLVTYLVGD--LHLSSAKSATIVTNFMGTLNLLGLLGGFLADA-KLGRYLTVAI  105 (573)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~--~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr-~~Grr~~~~~  105 (573)
                      .++++.++.+++.++++++++|++.++++.|++++  +|++..+++++.+.+.+...++++++|+++|| + |||+++.+
T Consensus         6 ~~~p~~~~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~-G~~~~l~~   84 (475)
T TIGR00924         6 FGHPKPLFTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVW-GTKKTMVL   84 (475)
T ss_pred             cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhc-chHHHHHH
Confidence            45777899999999999999999999999999987  99999999999999999999999999999999 6 99999999


Q ss_pred             HHHHHHHHHHHHHhhccCCCCCCCCCccccccccccccchhhHHHHHHHHHHHHHhcCccccccccccccCCCCCCCchH
Q 008231          106 FASVTALVVGLLTSATSIPSMRPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKE  185 (573)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~~~  185 (573)
                      +..+.+++.++++++.                          +.+.++++|++.|+|.|...|+..++++|++|+++++ 
T Consensus        85 ~~~~~~~g~~~~~~~~--------------------------~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~-  137 (475)
T TIGR00924        85 GGIVLMLGHFMLAMSI--------------------------YPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMP-  137 (475)
T ss_pred             HHHHHHHHHHHHHhcc--------------------------cHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcc-
Confidence            9999999998888753                          3557788999999999999999999999999876521 


Q ss_pred             HHhHHHHHHHHHHHHHhhhHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHHHHhcCccccccCCCCCchhHHH----H-
Q 008231          186 EKAMIFFFNRFYFAISIGSLFAVIVLVYVQDNVGRGWGYGISAGTMVVAAAILLIGTPWYRFKKPRGSPLTVIW----R-  260 (573)
Q Consensus       186 ~~~r~~~~~~~~~~~~ig~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-  260 (573)
                        .|++++++++++.|+|..+||.+++++.+.+||++.|.+.++.++++.+.+....+.+++.++++++.+...    + 
T Consensus       138 --~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  215 (475)
T TIGR00924       138 --RRDGGFTLFYMSINIGSFISPLLAGVIAENYGYHVGFNLAAVGMVIGLLTFFAGRHMLRDIGSVPDPLSGQGKTYGKL  215 (475)
T ss_pred             --cccceehhHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHcccccccCCCCCCCcchhhhhhHHH
Confidence              188899999999999999999999999998999999998887666665555554444332222111111000    0 


Q ss_pred             ------HHHHHHhccCCCCCCCCCcchhcccccCCCCCccchhhhhhhhhhhhhhccccCCcccccchhhHHHHHHHHhH
Q 008231          261 ------VLLLAWKKRSHPYPDHPSLLNEYQNAKVPHTEKFKCLDKAAIIEDNAVANENKNNSWIVSTVTEVEEVKMVLKL  334 (573)
Q Consensus       261 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  334 (573)
                            .+....+.... ....            ...+...........  .....+.. .+    ..+.. ++++....
T Consensus       216 ~~~~~~~~~~~~~~~~~-~~~~------------~~~~~~~~~~~~~~~--~~~~~~~~-~~----~~~~~-~~~~~~~~  274 (475)
T TIGR00924       216 LLALLAALALVFFCAWL-MHHV------------VIANILLMTVTLAVI--IFFFRLAF-KP----RLDAV-ARNKMYAY  274 (475)
T ss_pred             HHHHHHHHHHHHHHHHH-Hhcc------------HHHHHHHHHHHHHHH--HHHHHHHH-hc----cCCHH-HHhHHHHH
Confidence                  00000000000 0000            000000000000000  00000000 00    01111 22333446


Q ss_pred             HHHHHHHHHHHHHhhcccchhhh-hhhccccccccceecccccchhhHHHHHHHHHhhhhhhhhhhcccccccCCCchHH
Q 008231          335 LPIWATCILFWTVYSQMTTFTVE-QATFMNRKIGSFTVPSGSLSAFLFITILLFTSLNEKVFVPLARKITHSIQGMTSLQ  413 (573)
Q Consensus       335 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~  413 (573)
                      +.+++....+|..+.|..+.+.. +...++.+.+++.++.++++++|++..++..|+.+++..+..||..    +++...
T Consensus       275 l~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~~~~ip~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~----~~~~~~  350 (475)
T TIGR00924       275 IVLFLEAVVFWVLYAQMPTSLNFFADNNMHHEMLGMSVPVIWFQSLNPFWVVVGSPVLAMIWTRLGRKGK----DPTTPL  350 (475)
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccceEECHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCC----CCCcHH
Confidence            67888888999999998885543 3344666667788999999999999999999998887655555421    246666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcccCCcccchhHHHHHHHHHHHHHHhhhhhhhheeecccCchhHHHHHHHHHHH
Q 008231          414 RVGTGLIFSVIAMIVSAVIEQQRRETSVQKHIQISAFWLVPQYFLVGAGEAFVYVGQLEFFIREGPERMKSMSTGLFLSA  493 (573)
Q Consensus       414 ~~~~g~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~lv~~~~l~g~~~~~~~~~~~~~~~~~~p~~~rg~~~gi~~~~  493 (573)
                      ++..|+++.+++++.+.+..... +    .....+++|+++.+++.++||.+..|..++++.+.+|++.||+++|++.+.
T Consensus       351 k~~~G~~l~~~~~~~~~~~~~~~-~----~~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~l~  425 (475)
T TIGR00924       351 KFTLGMLFCGASFLTFAASIWFA-D----AGGLTSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQRLMGQMLGMWFLA  425 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhc-C----CCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            78999999999998887652211 1    223468899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhhhccCccccccccchhhHHHHHHHHHHHHHHHHHHHHHhhc
Q 008231          494 ISMGMFVSSMLVSIVDKITNKHWLRSNLNKGKLNNFYWLLAVLGLLNFMVFLFFAMKH  551 (573)
Q Consensus       494 ~~lg~~ig~~~~~~i~~~~~~~w~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~  551 (573)
                      ..+|+.+++.+.....+.            .+...+|..+++++++..+++++..|..
T Consensus       426 ~~~g~~l~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~  471 (475)
T TIGR00924       426 QAMGSLLGGYLATFGAVP------------QGVTGVFGKIGLVTLLVGVVMALMVPWL  471 (475)
T ss_pred             HHHHHHHHHHHHHHHhcc------------cchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999988766432            1123566677777777777666665543

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=100.00  E-value=5.1e-34  Score=302.69  Aligned_cols=422  Identities=20%  Similarity=0.231  Sum_probs=306.9

Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHH
Q 008231           31 GWLAAGLILGTELSERICAMGISMNLVTYLVGDLHLSSAKSATIVTNFMGTLNLLGLLGGFLADAKLGRYLTVAIFASVT  110 (573)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~  110 (573)
                      +++.++.+++.++.+++++|++..+++.|+++++|++..+++.+.+.+.....++++++|+++||+.||||++.++.++.
T Consensus         7 ~p~~l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~   86 (493)
T PRK15462          7 QPRAIYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLM   86 (493)
T ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHH
Confidence            77889999999999999999999999999999999999999999999999999999999999999779999999999999


Q ss_pred             HHHHHHHHhhccCCCCCCCCCccccccccccccchhhHHHHHHHHHHHHHhcCccccccccccccCCCCCCCchHHHhHH
Q 008231          111 ALVVGLLTSATSIPSMRPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKAMI  190 (573)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~  190 (573)
                      +++.++++...+                         +...++++..+.++|.|...++..++++|.+|+++++    |.
T Consensus        87 ~lg~lll~~~~~-------------------------~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~----R~  137 (493)
T PRK15462         87 AIGHVVLGASEI-------------------------HPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPR----RD  137 (493)
T ss_pred             HHHHHHHHHhhc-------------------------chhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCcc----cc
Confidence            999877764311                         1123455556667888888898899999999987533    99


Q ss_pred             HHHHHHHHHHHhhhHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHHHHhcCccccccCC-CCCchh--HHHH----HHH
Q 008231          191 FFFNRFYFAISIGSLFAVIVLVYVQDNVGRGWGYGISAGTMVVAAAILLIGTPWYRFKKP-RGSPLT--VIWR----VLL  263 (573)
Q Consensus       191 ~~~~~~~~~~~ig~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~----~~~  263 (573)
                      +++++++.+.|+|+.++|.+.+++.+.+||++.|.+.++.++++.+.+....+...+... +.++.+  ....    .+.
T Consensus       138 sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~iaaigm~l~li~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  217 (493)
T PRK15462        138 GGFSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAVGMIAGLVIFLCGNRHFTHTRGVNKKVLRATNFLLPNWGWLL  217 (493)
T ss_pred             ceehHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCCchhhhHHHHHHHHHH
Confidence            999999999999999999999999999999999998877776666665554443322110 111110  0000    000


Q ss_pred             HHHhccCCCCCCCCCcchhcccccCCCCCccchh-hhhhhhhhhhhhccccCCcccccchhhHHHHHHHHhHHHHHHHHH
Q 008231          264 LAWKKRSHPYPDHPSLLNEYQNAKVPHTEKFKCL-DKAAIIEDNAVANENKNNSWIVSTVTEVEEVKMVLKLLPIWATCI  342 (573)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  342 (573)
                      ...-..    +    .+...   ... .+..... ...........-       +........++++++...+.+++..+
T Consensus       218 ~~~~~~----~----~~~~~---~~~-~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~er~r~~~~~~l~~~~~  278 (493)
T PRK15462        218 VLLVAT----P----ALITV---LFW-KEWSVYALIVATIIGLGVLA-------KIYRKAENQKQRKELGLIVTLTFFSM  278 (493)
T ss_pred             HHHHHH----H----HHHHH---HHH-HHHHHHHHHHHHHHHHHHHH-------HHHHhcCCHHHHhhHHHHHHHHHHHH
Confidence            000000    0    00000   000 0000000 000000000000       00000112245677788888999999


Q ss_pred             HHHHHhhcccchhhhhh-hccccccccceecccccchhhHHHHHHHHHhhhhhhhhhhcccccccCCCchHHHHHHHHHH
Q 008231          343 LFWTVYSQMTTFTVEQA-TFMNRKIGSFTVPSGSLSAFLFITILLFTSLNEKVFVPLARKITHSIQGMTSLQRVGTGLIF  421 (573)
Q Consensus       343 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~  421 (573)
                      ++|..+.|.++.+.... .+.+++++++.+|+.+++++|++.+++.+|+..+++.+..||.    +.++...|+..|+++
T Consensus       279 ~Fw~~~~Q~~~sl~lfa~~~vd~~~~g~~ip~~~~qslNp~~ii~l~P~~a~lw~~l~~~~----~~~s~~~Kfa~g~~~  354 (493)
T PRK15462        279 LFWAFAQQGGSSISLYIDRFVNRDMFGYTVPTAMFQSINAFAVMLCGVFLAWVVKESVAGN----RTVRIWGKFALGLGL  354 (493)
T ss_pred             HHHHHHHHhhHHHHHHHHHhccchhcceeeCHHHHHhHhHHHHHHHHHHHHHHHHHHhcCC----CCCCcHHHHHHHHHH
Confidence            99999999998655443 5678888899999999999999999999999999976654332    136788889999999


Q ss_pred             HHHHHHHHHHHHHHHHhhcccCCcccchhHHHHHHHHHHHHHHhhhhhhhheeecccCchhHHHHHHHHHHHH-HHHHHH
Q 008231          422 SVIAMIVSAVIEQQRRETSVQKHIQISAFWLVPQYFLVGAGEAFVYVGQLEFFIREGPERMKSMSTGLFLSAI-SMGMFV  500 (573)
Q Consensus       422 ~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~lv~~~~l~g~~~~~~~~~~~~~~~~~~p~~~rg~~~gi~~~~~-~lg~~i  500 (573)
                      ++++++++.+......     +....+.+|++..++++++||.+.+|...+.+++.+|++.+|..+|++.... .+|+.+
T Consensus       355 ~g~~f~~l~~~~~~~~-----~~~~~s~~wl~~~~~~~t~gEl~~sPvgls~~~~laP~~~~g~~mg~w~l~~~~~~~~~  429 (493)
T PRK15462        355 MSAGFCILTLSARWSA-----MYGHSSLPLMVLGLAVMGFAELFIDPVAMSQITRIEIPGVTGVLTGIYMLLSGAIANYL  429 (493)
T ss_pred             HHHHHHHHHHHHhhcC-----CCCCcCHHHHHHHHHHHHHHHHHHChHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999998877542210     1234688899999999999999999999999999999999999999997744 688888


Q ss_pred             HHHHHHHHh
Q 008231          501 SSMLVSIVD  509 (573)
Q Consensus       501 g~~~~~~i~  509 (573)
                      ++.+.+...
T Consensus       430 ~g~~~~~~~  438 (493)
T PRK15462        430 AGVIADQTS  438 (493)
T ss_pred             HHHHHHHhc
Confidence            877776653

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=100.00  E-value=6.9e-33  Score=299.65  Aligned_cols=458  Identities=19%  Similarity=0.263  Sum_probs=321.5

Q ss_pred             CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHH
Q 008231           29 TGGWLAAGLILGTELSERICAMGISMNLVTYLVGDLHLSSAKSATIVTNFMGTLNLLGLLGGFLADAKLGRYLTVAIFAS  108 (573)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~  108 (573)
                      .++.+.++.++..++++++++|++..+++.|+++++|++..+++++.+.+.......++++|+++||++|||+++.++..
T Consensus        17 ~~~p~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~   96 (500)
T PRK09584         17 FKQPKAFYLIFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAI   96 (500)
T ss_pred             hcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence            45667899999999999999999999999999999999999999999888877778788999999993399999999999


Q ss_pred             HHHHHHHHHHhhccCCCCCCCCCccccccccccccchhhHHHHHHHHHHHHHhcCccccccccccccCCCCCCCchHHHh
Q 008231          109 VTALVVGLLTSATSIPSMRPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKA  188 (573)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (573)
                      +.+++..+++++.+                         +...++++|+++|+|.|...++..+++.|++|+++++    
T Consensus        97 ~~~ig~~l~~~~~~-------------------------~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~----  147 (500)
T PRK09584         97 VLAIGYALVAWSGH-------------------------DAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPR----  147 (500)
T ss_pred             HHHHHHHHHHHhcc-------------------------cHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchh----
Confidence            99999888887531                         3346778899999999999999999999999876532    


Q ss_pred             HHHHHHHHHHHHHhhhHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHHHHhcCcccccc--CCCCCchhHH--H----H
Q 008231          189 MIFFFNRFYFAISIGSLFAVIVLVYVQDNVGRGWGYGISAGTMVVAAAILLIGTPWYRFK--KPRGSPLTVI--W----R  260 (573)
Q Consensus       189 r~~~~~~~~~~~~ig~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~--~----~  260 (573)
                      |.+++++++++.++|+.+||.+++++.+.+||++.|.+.++..+++.+.+.+..+..++.  +++.++.+..  .    .
T Consensus       148 ~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i~~i~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (500)
T PRK09584        148 LDGAFTMYYMSINIGSFFSMLATPWLAAKYGWSVAFALSVVGMLITVVNFAFCQRWVKQYGSKPDFEPINYRKLLLTIVG  227 (500)
T ss_pred             hhhcchHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHhHHHhccCCCCCCccccchhhHHHHHHH
Confidence            667899999999999999999999999999999999988776666554443333222221  1211111110  0    0


Q ss_pred             HHHHHH-hccCCCCCCCCCcchhcccccCCCCCccchhhhhhhhhhhhhhccccCCcccccchhhHHHHHHHHhHHHHHH
Q 008231          261 VLLLAW-KKRSHPYPDHPSLLNEYQNAKVPHTEKFKCLDKAAIIEDNAVANENKNNSWIVSTVTEVEEVKMVLKLLPIWA  339 (573)
Q Consensus       261 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  339 (573)
                      ...... .......++..              +  ................+    .+   ..++ .++++.+..+.+++
T Consensus       228 ~~~~~~~~~~~~~~~~~~--------------~--~~~~~~~~~~~~~~~~~----~~---~~~~-~~~~~~~~~~~~~~  283 (500)
T PRK09584        228 VVALIAIATWLLHNQEIA--------------R--MALGVVALGIVVIFGKE----AF---AMKG-AARRKMIVAFILML  283 (500)
T ss_pred             HHHHHHHHHHHHhcchHH--------------H--HHHHHHHHHHHHHHHHH----Hh---hcCH-HHHHHHHHHHHHHH
Confidence            000000 00000000000              0  00000000000000000    00   1111 23445555566778


Q ss_pred             HHHHHHHHhhcccchhhhhhh-ccccccccceecccccchhhHHHHHHHHHhhhhhhhhhhcccccccCCCchHHHHHHH
Q 008231          340 TCILFWTVYSQMTTFTVEQAT-FMNRKIGSFTVPSGSLSAFLFITILLFTSLNEKVFVPLARKITHSIQGMTSLQRVGTG  418 (573)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g  418 (573)
                      ..+.+|..+.|.+..+..+.. +.++...++.++.+++++++++..++..|+.+++..+..+|       .+..+++..|
T Consensus       284 ~~i~f~~~~~q~~~~l~~~~~~~~~~~~~g~~i~~~~~~s~n~i~iil~~p~~~~~~~~l~~r-------~~~~~~~~~G  356 (500)
T PRK09584        284 EAIIFFVLYSQMPTSLNFFAIRNVEHSILGIAVEPEQYQALNPFWIMIGSPILAAIYNKMGDR-------LPMPHKFAIG  356 (500)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHhccccccceEECHHHHHHHhHHHHHHHHHHHHHHHHHhCcC-------CCcHHHHHHH
Confidence            888899999999998776553 34555667788899999999999999999998886555444       3467789999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcccCCcccchhHHHHHHHHHHHHHHhhhhhhhheeecccCchhHHHHHHHHHHHHHHHH
Q 008231          419 LIFSVIAMIVSAVIEQQRRETSVQKHIQISAFWLVPQYFLVGAGEAFVYVGQLEFFIREGPERMKSMSTGLFLSAISMGM  498 (573)
Q Consensus       419 ~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~lv~~~~l~g~~~~~~~~~~~~~~~~~~p~~~rg~~~gi~~~~~~lg~  498 (573)
                      +++++++++.+........     .....+.+|+++.+++.++||.+.+|...+++.+.+|++.||+++|++.+...+|+
T Consensus       357 ~~l~~l~f~~l~~~~~~~~-----~~~~vs~~~~~~~~~l~~~ge~~~~p~g~s~~~~~aP~~~rg~~~g~~~l~~a~g~  431 (500)
T PRK09584        357 MVLCSGAFLVLPLGAKFAN-----DAGIVSVNWLIASYGLQSIGELMISGLGLAMVAQLVPQRLMGFIMGSWFLTTAGAA  431 (500)
T ss_pred             HHHHHHHHHHHHHHHHhcC-----CCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHH
Confidence            9999999998877532110     12345677899999999999999999999999999999999999999998888888


Q ss_pred             HHHHHHHHHHhhhhccCcccccc-ccchhhHHHHHHHHHHHHHHHHHHHHHhhcchh
Q 008231          499 FVSSMLVSIVDKITNKHWLRSNL-NKGKLNNFYWLLAVLGLLNFMVFLFFAMKHQYN  554 (573)
Q Consensus       499 ~ig~~~~~~i~~~~~~~w~~~~~-~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~  554 (573)
                      .+++.+.+......   -..+.. ..+.+..+|..+++++++.+++++...+..++.
T Consensus       432 ~~~g~~~~~~~~~~---~~~~~~~~~~~~~~~f~~~~~~~~~~a~~~~~~~~~~~k~  485 (500)
T PRK09584        432 LIAGYVANLMAVPD---NVTDPLMSLEVYGRVFLQIGIATAVIAVLMLLTAPKLNRM  485 (500)
T ss_pred             HHHHHHHHHhcccc---ccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88888876543110   000000 112245677777777776666666666654444

>PRK03545 putative arabinose transporter; Provisional

Probab=99.96  E-value=3.8e-26  Score=240.24  Aligned_cols=376  Identities=11%  Similarity=0.058  Sum_probs=249.8

Q ss_pred             CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHH
Q 008231           29 TGGWLAAGLILGTELSERICAMGISMNLVTYLVGDLHLSSAKSATIVTNFMGTLNLLGLLGGFLADAKLGRYLTVAIFAS  108 (573)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~  108 (573)
                      +++|..++.+.+..+......+...+.+ +.+.+++|.|..+.+++.+.+.+++.++.++.|+++||+ |||+++..+..
T Consensus         5 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~   82 (390)
T PRK03545          5 KVAWLRVVTLALAAFIFNTTEFVPVGLL-SDIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNV-ERRKLLIGLFV   82 (390)
T ss_pred             ccchHHHHHHHHHHHHHHhHHHHHHcch-HHHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-ChHHHHHHHHH
Confidence            3455566777776666555554333333 567889999999999999999999999999999999998 99999999999


Q ss_pred             HHHHHHHHHHhhccCCCCCCCCCccccccccccccchhhHHHHHHHHHHHHHhcCccccccccccccCCCCCCCchHHHh
Q 008231          109 VTALVVGLLTSATSIPSMRPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKA  188 (573)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (573)
                      +.+++.+++.+++                          +++.++++|+++|++.+...+...+++.|++|+++      
T Consensus        83 ~~~~~~~~~~~~~--------------------------~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~------  130 (390)
T PRK03545         83 LFIASHVLSALAW--------------------------NFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGK------  130 (390)
T ss_pred             HHHHHHHHHHHhc--------------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhh------
Confidence            9999999988863                          67889999999999999888888999999999888      


Q ss_pred             HHHHHHHHHHHHHhhhHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHHHHhcCccccccCCCCCchhHHHHHHHHHHhc
Q 008231          189 MIFFFNRFYFAISIGSLFAVIVLVYVQDNVGRGWGYGISAGTMVVAAAILLIGTPWYRFKKPRGSPLTVIWRVLLLAWKK  268 (573)
Q Consensus       189 r~~~~~~~~~~~~ig~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (573)
                      |+++++++..+.++|..++|++++.+.+..|||++|++.++..++..+......|+.+++  ++++.++           
T Consensus       131 r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~~~~--~~~~~~~-----------  197 (390)
T PRK03545        131 KAQALSLLATGTALAMVLGLPLGRVIGQYLGWRTTFLAIGGGALITLLLLIKLLPLLPSE--HSGSLKS-----------  197 (390)
T ss_pred             hhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhCCCCCCC--CcchHHH-----------
Confidence            999999999999999999999999999989999999988776655544433333321110  0000000           


Q ss_pred             cCCCCCCCCCcchhcccccCCCCCccchhhhhhhhhhhhhhccccCCcccccchhhHHHHHHHHhHHHHHHHHHHHHHHh
Q 008231          269 RSHPYPDHPSLLNEYQNAKVPHTEKFKCLDKAAIIEDNAVANENKNNSWIVSTVTEVEEVKMVLKLLPIWATCILFWTVY  348 (573)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  348 (573)
                                                                          .....++.+........++.....+...
T Consensus       198 ----------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (390)
T PRK03545        198 ----------------------------------------------------LPLLFRRPALVSLYLLTVVVVTAHFTAY  225 (390)
T ss_pred             ----------------------------------------------------HHHHHhCcHHHHHHHHHHHHHHHHHHHH
Confidence                                                                0000001111111111111122222222


Q ss_pred             hcccchhhhhhhccccccccceecccccchhhHHHHHHHHHhhhhhhhhhhcccccccCCCchHHHHHHHHHHHHHHHHH
Q 008231          349 SQMTTFTVEQATFMNRKIGSFTVPSGSLSAFLFITILLFTSLNEKVFVPLARKITHSIQGMTSLQRVGTGLIFSVIAMIV  428 (573)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~i~~i~  428 (573)
                      ...+.++. ...+.+      ....+.+.....++.++...+.+++.||..+|            .+..+..+..++...
T Consensus       226 ~~~~~~l~-~~~g~s------~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~------------~~~~~~~~~~~~~~~  286 (390)
T PRK03545        226 SYIEPFVQ-QVAGLS------ENFATLLLLLFGGAGIIGSVLFSRLGNRHPSG------------FLLIAIALLLVCLLL  286 (390)
T ss_pred             HHHHHHHH-HhcCCC------ccHHHHHHHHHHHHHHHHHHHHHHHhhccchh------------HHHHHHHHHHHHHHH
Confidence            22222211 111111      11233344445555666666666665443222            134444444444433


Q ss_pred             HHHHHHHHHhhcccCCcccchhHHHHHHHHHHHHHHhhhhhhhheeecccCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008231          429 SAVIEQQRRETSVQKHIQISAFWLVPQYFLVGAGEAFVYVGQLEFFIREGPERMKSMSTGLFLSAISMGMFVSSMLVSIV  508 (573)
Q Consensus       429 ~~~~~~~~~~~~~~~~~~~~~~~lv~~~~l~g~~~~~~~~~~~~~~~~~~p~~~rg~~~gi~~~~~~lg~~ig~~~~~~i  508 (573)
                      +...             ..+.+.+++..++.|++.....+.....+.+..| +.|++++|+++....+|..+|+.+.|.+
T Consensus       287 l~~~-------------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~  352 (390)
T PRK03545        287 LLPA-------------ANSEWHLSVLSIFWGIAIMCIGLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGNQV  352 (390)
T ss_pred             HHHH-------------hchHHHHHHHHHHHHHHHhcchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3221             1134455566777888877777777778888877 5789999999999999999999999998


Q ss_pred             hhhhccCccccccccchhhHHHHHHHHHHHHHHHHHHHHH
Q 008231          509 DKITNKHWLRSNLNKGKLNNFYWLLAVLGLLNFMVFLFFA  548 (573)
Q Consensus       509 ~~~~~~~w~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~  548 (573)
                      .+..            ++...|+..+++.+++.++.+...
T Consensus       353 ~~~~------------g~~~~~~~~~~~~~~~~~~~~~~~  380 (390)
T PRK03545        353 SLHL------------GLSSIGYVGAALALAALVWSILIF  380 (390)
T ss_pred             Hhcc------------ChhHHHHHHHHHHHHHHHHHHHHc
Confidence            8643            234567777777777777665554

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.95  E-value=4e-25  Score=233.13  Aligned_cols=376  Identities=12%  Similarity=0.028  Sum_probs=249.1

Q ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHH
Q 008231           30 GGWLAAGLILGTELSERICAMGISMNLVTYLVGDLHLSSAKSATIVTNFMGTLNLLGLLGGFLADAKLGRYLTVAIFASV  109 (573)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~  109 (573)
                      +.++.+..++...++..++.....+.+|.|+.+++|+|..+.+++.+.+.++..+++++.|+++||+ ||||++..+.++
T Consensus        12 ~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~-g~r~~l~~~~~~   90 (399)
T PRK05122         12 RLTLRIVSIVMFTFISYLTIGLPLAVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTL-GPKKAVVFGLCG   90 (399)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhcc-CCcchHHHHHHH
Confidence            3446777788888888888888888999999999999999999999999999999999999999999 999999999998


Q ss_pred             HHHHHHHHHhhccCCCCCCCCCccccccccccccchhhHHHHHHHHHHHHHhcCccccccccccccCCCCCCCchHHHhH
Q 008231          110 TALVVGLLTSATSIPSMRPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKAM  189 (573)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~r  189 (573)
                      .+++...+.++......                  ...+...+++.|+++|++.+...+...+++.|++|+++      |
T Consensus        91 ~~~~~~~~~~~~~~~~~------------------~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------r  146 (399)
T PRK05122         91 CALSGLLYLLAGLLAAW------------------PVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALH------T  146 (399)
T ss_pred             HHHHHHHHHHhhhhhcc------------------chhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhh------h
Confidence            88877666553210100                  00256688999999999999999998899999999888      9


Q ss_pred             HHHHHHHHHHHHhhhHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHHHHhcCccccccCCCCCchhHHHHHHHHHHhcc
Q 008231          190 IFFFNRFYFAISIGSLFAVIVLVYVQDNVGRGWGYGISAGTMVVAAAILLIGTPWYRFKKPRGSPLTVIWRVLLLAWKKR  269 (573)
Q Consensus       190 ~~~~~~~~~~~~ig~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (573)
                      ++++++...+.++|..+||.+++++.+..||++.+++..+..++..+.  . .+. ++.++++++               
T Consensus       147 ~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~--~-~~~-~~~~~~~~~---------------  207 (399)
T PRK05122        147 GRVISWNGIATYGALAIGAPLGVLLYHWGGLAGLGLLIMLLALLGLLL--A-RPR-PAVPPVKGE---------------  207 (399)
T ss_pred             ccchhhhhhhhhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHH--H-hcC-CCCCCCCcc---------------
Confidence            999999999999999999999999999999999887665543332222  1 111 110000000               


Q ss_pred             CCCCCCCCCcchhcccccCCCCCccchhhhhhhhhhhhhhccccCCcccccchhhHHHHHHHHhH-HHHHHHHHHHHHHh
Q 008231          270 SHPYPDHPSLLNEYQNAKVPHTEKFKCLDKAAIIEDNAVANENKNNSWIVSTVTEVEEVKMVLKL-LPIWATCILFWTVY  348 (573)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~  348 (573)
                                             +.                     ++   . .   ..+..... ....+....+....
T Consensus       208 -----------------------~~---------------------~~---~-~---~~~~~~~~~~~~~~~~~~~~~~~  236 (399)
T PRK05122        208 -----------------------RL---------------------PF---R-R---VLGRVWPYGMGLALASIGFGTIA  236 (399)
T ss_pred             -----------------------ch---------------------hH---H-H---HHHHHHHHHHHHHHHHHHHHHHH
Confidence                                   00                     00   0 0   00000000 00111111111111


Q ss_pred             hcccchhhhhhhccccccccceecccccchhhHHHHHHHHHhhhhhhhhhhcccccccCCCchHHHHHHHHHHHHHHHHH
Q 008231          349 SQMTTFTVEQATFMNRKIGSFTVPSGSLSAFLFITILLFTSLNEKVFVPLARKITHSIQGMTSLQRVGTGLIFSVIAMIV  428 (573)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~i~~i~  428 (573)
                      ...+.++...  +..        ..+.......++.++.....+++.+|..+|           +.+..+.++.+++++.
T Consensus       237 ~~~~~~~~~~--~~~--------~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~-----------~~~~~~~~~~~~~~~~  295 (399)
T PRK05122        237 TFITLYYAAR--GWD--------GAALALTLFGVAFVGARLLFGNLINRLGGL-----------RVAIVSLLVEILGLLL  295 (399)
T ss_pred             HHHHHHHHHc--ccc--------cchHHHHHHHHHHHHHHHHHHHHHHHhccH-----------HHHHHHHHHHHHHHHH
Confidence            1111111110  110        112223334444555556666665544332           2255566666666655


Q ss_pred             HHHHHHHHHhhcccCCcccchhHHHHHHHHHHHHHHhhhhhhhheeecccCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008231          429 SAVIEQQRRETSVQKHIQISAFWLVPQYFLVGAGEAFVYVGQLEFFIREGPERMKSMSTGLFLSAISMGMFVSSMLVSIV  508 (573)
Q Consensus       429 ~~~~~~~~~~~~~~~~~~~~~~~lv~~~~l~g~~~~~~~~~~~~~~~~~~p~~~rg~~~gi~~~~~~lg~~ig~~~~~~i  508 (573)
                      +....              +.+..++..++.|++.+...|.......+..|++.||++.|+++....+|..+++.+.|.+
T Consensus       296 ~~~~~--------------~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l  361 (399)
T PRK05122        296 LWLAP--------------SPWMALIGAALTGFGFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLV  361 (399)
T ss_pred             HHHhc--------------cHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            54421              3334556678888888888888777788899999999999999999999999999999988


Q ss_pred             hhhhccCccccccccchhhHHHHHHHHHHHHHHHHHHHH
Q 008231          509 DKITNKHWLRSNLNKGKLNNFYWLLAVLGLLNFMVFLFF  547 (573)
Q Consensus       509 ~~~~~~~w~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~  547 (573)
                      .+..            ++...+++.+++++++.+..+++
T Consensus       362 ~~~~------------g~~~~~~~~~~~~~~~~~~~~~~  388 (399)
T PRK05122        362 ASWF------------GYPSIFLAAALAALLGLALTWLL  388 (399)
T ss_pred             HHHc------------CHHHHHHHHHHHHHHHHHHHHHh
Confidence            7532            23456666676666665554443

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.95  E-value=5.5e-25  Score=223.75  Aligned_cols=379  Identities=15%  Similarity=0.113  Sum_probs=267.4

Q ss_pred             CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHH
Q 008231           29 TGGWLAAGLILGTELSERICAMGISMNLVTYLVGDLHLSSAKSATIVTNFMGTLNLLGLLGGFLADAKLGRYLTVAIFAS  108 (573)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~  108 (573)
                      +..+..++.+..+.|.....=+.....+ +.+.+++|.|..++|+.++.|.++..++.|+...+.||+ .||++++..+.
T Consensus         9 ~~~~~~l~aLa~~~F~igttEfv~~gLL-p~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~-~Rr~lLl~~l~   86 (394)
T COG2814           9 KPMWLALLALALAAFAIGTTEFVPVGLL-PPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRL-ERRRLLLGLLA   86 (394)
T ss_pred             ccchHHHHHHHHHHHHHHhHHHHHHhch-HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccc-chHHHHHHHHH
Confidence            4556678888888888777766665555 567889999999999999999999999999999999998 99999999999


Q ss_pred             HHHHHHHHHHhhccCCCCCCCCCccccccccccccchhhHHHHHHHHHHHHHhcCccccccccccccCCCCCCCchHHHh
Q 008231          109 VTALVVGLLTSATSIPSMRPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKA  188 (573)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (573)
                      ++.++.++++++                          +++..++++|++.|+..|.+.+...++.++..|+++      
T Consensus        87 lFi~~n~l~alA--------------------------p~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~------  134 (394)
T COG2814          87 LFIVSNLLSALA--------------------------PSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGK------  134 (394)
T ss_pred             HHHHHHHHHHHh--------------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccc------
Confidence            999999999998                          478899999999999999999999999999999999      


Q ss_pred             HHHHHHHHHHHHHhhhHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHHHHhcCccccccCCCCCchhHHHHHHHHHHhc
Q 008231          189 MIFFFNRFYFAISIGSLFAVIVLVYVQDNVGRGWGYGISAGTMVVAAAILLIGTPWYRFKKPRGSPLTVIWRVLLLAWKK  268 (573)
Q Consensus       189 r~~~~~~~~~~~~ig~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (573)
                      |+++.++...+..++.++|.+++.++.+.+|||++|++.+...+++++..+...|+....++.+.+..+..         
T Consensus       135 ~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GWR~~F~~ia~l~ll~~~~~~~~lP~~~~~~~~~~~~~~~~---------  205 (394)
T COG2814         135 RGRALALVFTGLTLATVLGVPLGTFLGQLFGWRATFLAIAVLALLALLLLWKLLPPSEISGSLPGPLRTLL---------  205 (394)
T ss_pred             hhhHHHHHHHHHHHHHHHhccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCCCccCCCCCCcchhHHH---------
Confidence            99999999999999999999999999999999999999888888877776666661000000001000000         


Q ss_pred             cCCCCCCCCCcchhcccccCCCCCccchhhhhhhhhhhhhhccccCCcccccchhhHHHHHHHHhHHHHHHHHHHHHHHh
Q 008231          269 RSHPYPDHPSLLNEYQNAKVPHTEKFKCLDKAAIIEDNAVANENKNNSWIVSTVTEVEEVKMVLKLLPIWATCILFWTVY  348 (573)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  348 (573)
                                                                            ...++.+....+...++.....|..|
T Consensus       206 ------------------------------------------------------~~l~~p~v~~~l~~t~l~~~g~F~~f  231 (394)
T COG2814         206 ------------------------------------------------------RLLRRPGVLLGLLATFLFMTGHFALY  231 (394)
T ss_pred             ------------------------------------------------------HHhcCchHHHHHHHHHHHHcchhhhH
Confidence                                                                  00111122233333444444445554


Q ss_pred             hcccchhhhhhhccccccccceecccccchhhHHHHHHHHHhhhhhhhhhhcccccccCCCchHHHHHHHHHHHHHHHHH
Q 008231          349 SQMTTFTVEQATFMNRKIGSFTVPSGSLSAFLFITILLFTSLNEKVFVPLARKITHSIQGMTSLQRVGTGLIFSVIAMIV  428 (573)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~i~~i~  428 (573)
                      +...+++... .+++.+      ..+++.....++.++...+.+++.||..+            +.+.....+.++.++.
T Consensus       232 tYi~P~L~~v-~g~s~~------~vs~~Ll~~Gv~~~~Gn~~gGrl~dr~~~------------~~l~~~~~l~a~~~l~  292 (394)
T COG2814         232 TYIRPFLESV-AGFSVS------AVSLVLLAFGIAGFIGNLLGGRLADRGPR------------RALIAALLLLALALLA  292 (394)
T ss_pred             HhHHHHHHHc-cCCCHh------HHHHHHHHHHHHHHHHHHHHhhhccccch------------hHHHHHHHHHHHHHHH
Confidence            4444333221 122211      23444555566666667777777554111            2245555666666666


Q ss_pred             HHHHHHHHHhhcccCCcccchhHHHHHHHHHHHHHHhhhhhhhheeecccCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008231          429 SAVIEQQRRETSVQKHIQISAFWLVPQYFLVGAGEAFVYVGQLEFFIREGPERMKSMSTGLFLSAISMGMFVSSMLVSIV  508 (573)
Q Consensus       429 ~~~~~~~~~~~~~~~~~~~~~~~lv~~~~l~g~~~~~~~~~~~~~~~~~~p~~~rg~~~gi~~~~~~lg~~ig~~~~~~i  508 (573)
                      +.+..             .+.+..+...++++++.....+..+....+..| +.++.+.+++....++|..+|..++|.+
T Consensus       293 l~~~~-------------~~~~~~~~~~~~wg~a~~~~~~~~~~~~a~~~p-~~~~~a~sl~~aa~nlgia~GA~lGG~v  358 (394)
T COG2814         293 LTFTG-------------ASPALALALLFLWGFAFSPALQGLQTRLARLAP-DAADLAGSLNVAAFNLGIALGAALGGLV  358 (394)
T ss_pred             HHHhc-------------chHHHHHHHHHHHHHHhhhhhhHHHHHhcccCC-CchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55542             123344445555666666555555555555444 6699999999999999999999999999


Q ss_pred             hhhhccCccccccccchhhHHHHHHHHHHHHHHHHHHHHHh
Q 008231          509 DKITNKHWLRSNLNKGKLNNFYWLLAVLGLLNFMVFLFFAM  549 (573)
Q Consensus       509 ~~~~~~~w~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~  549 (573)
                      .+..            ++....++.+++.+++.++.+...+
T Consensus       359 ~~~~------------g~~~~~~~~a~l~~~a~~~~~~~~~  387 (394)
T COG2814         359 LDAL------------GYAATGWVGAALLLLALLLALLSAR  387 (394)
T ss_pred             HHhh------------chHHHHHHHHHHHHHHHHHHHHHHh
Confidence            8742            2345566777777776666555443

>PRK12382 putative transporter; Provisional

Probab=99.95  E-value=6.9e-25  Score=230.78  Aligned_cols=375  Identities=10%  Similarity=-0.013  Sum_probs=245.3

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHH
Q 008231           32 WLAAGLILGTELSERICAMGISMNLVTYLVGDLHLSSAKSATIVTNFMGTLNLLGLLGGFLADAKLGRYLTVAIFASVTA  111 (573)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~  111 (573)
                      .+.++.+.++.++...+.....+.+|.|+.+++|+|..+.+++.+.+.+...+++++.|+++||+ ||||++..+.+...
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~-g~r~~l~~~~~~~~   92 (392)
T PRK12382         14 NFSLFRIAFAVFLTYMTVGLPLPVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQY-GAKRSALQGMLACG   92 (392)
T ss_pred             cccHHHHHHHHHHHHHHHHHHhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhh-cchHHHHHHHHHHH
Confidence            34667777777888888888888899999999999999999999999999999999999999998 99999999988777


Q ss_pred             HHHHHHHhhccCCCCCCCCCccccccccccccchhhHHHHHHHHHHHHHhcCccccccccccccCCCCCCCchHHHhHHH
Q 008231          112 LVVGLLTSATSIPSMRPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKAMIF  191 (573)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~  191 (573)
                      ++.+........+.                  ....+.+.++++|+++|++.+...+...+++.|.+|+++      |++
T Consensus        93 ~~~~~~~~~~~~~~------------------~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~  148 (392)
T PRK12382         93 LAGLAYLLAAILPV------------------SAPFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKH------SGK  148 (392)
T ss_pred             HHHHHHHhhhcccc------------------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccc------cch
Confidence            66543322211110                  001367789999999999999888888889999999888      999


Q ss_pred             HHHHHHHHHHhhhHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHHHHhcCccccccCCCCCchhHHHHHHHHHHhccCC
Q 008231          192 FFNRFYFAISIGSLFAVIVLVYVQDNVGRGWGYGISAGTMVVAAAILLIGTPWYRFKKPRGSPLTVIWRVLLLAWKKRSH  271 (573)
Q Consensus       192 ~~~~~~~~~~ig~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (573)
                      ++++++.+.++|..++|.+++++.+.+||++.+.+..+..++.... ....|   +.+++++.                 
T Consensus       149 a~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~-----------------  207 (392)
T PRK12382        149 VMSWNGMAMYGALAAGAPLGLLLHSHFGFAALALTTMVLPLLAWAF-NGTVR---KVPAHAGE-----------------  207 (392)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHH-HHhcc---CCCCCccc-----------------
Confidence            9999999999999999999999998899998776554433222211 11111   11100000                 


Q ss_pred             CCCCCCCcchhcccccCCCCCccchhhhhhhhhhhhhhccccCCcccccchhhHHHHHHHHhHHHHHHHHHHHHHHhhcc
Q 008231          272 PYPDHPSLLNEYQNAKVPHTEKFKCLDKAAIIEDNAVANENKNNSWIVSTVTEVEEVKMVLKLLPIWATCILFWTVYSQM  351 (573)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  351 (573)
                                         .+  +..+.                 +   +  ... ....    ...+....+.......
T Consensus       208 -------------------~~--~~~~~-----------------~---~--~~~-~~~~----~~~l~~~~~~~~~~~~  239 (392)
T PRK12382        208 -------------------RP--SLWSV-----------------V---G--LIW-KPGL----GLALQGVGFAVIGTFV  239 (392)
T ss_pred             -------------------Cc--hHHHH-----------------H---H--HHH-HhHH----HHHHHHHHHhHHHHHH
Confidence                               00  00000                 0   0  000 0000    0111111111111111


Q ss_pred             cchhhhhhhccccccccceecccccchhhHHHHHHHHHhhhhhhhhhhcccccccCCCchHHHHHHHHHHHHHHHHHHHH
Q 008231          352 TTFTVEQATFMNRKIGSFTVPSGSLSAFLFITILLFTSLNEKVFVPLARKITHSIQGMTSLQRVGTGLIFSVIAMIVSAV  431 (573)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~i~~i~~~~  431 (573)
                      +.++ .+. +..        ..+.......++.++..++.+++.+|..+|+.           +..+..+..++++.+..
T Consensus       240 ~~~~-~~~-~~~--------~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~-----------~~~~~~~~~~~~~~~~~  298 (392)
T PRK12382        240 SLYF-ASK-GWA--------MAGFTLTAFGGAFVLMRVLFGWMPDRFGGVKV-----------AIVSLLVETVGLLLLWL  298 (392)
T ss_pred             HHHH-Hhc-CCc--------hhHHHHHHHHHHHHHHHHHHHHHHHhcCCCee-----------hHHHHHHHHHHHHHHHH
Confidence            1111 110 110        11222333444455566677777665544422           45566666666555443


Q ss_pred             HHHHHHhhcccCCcccchhHHHHHHHHHHHHHHhhhhhhhheeecccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008231          432 IEQQRRETSVQKHIQISAFWLVPQYFLVGAGEAFVYVGQLEFFIREGPERMKSMSTGLFLSAISMGMFVSSMLVSIVDKI  511 (573)
Q Consensus       432 ~~~~~~~~~~~~~~~~~~~~lv~~~~l~g~~~~~~~~~~~~~~~~~~p~~~rg~~~gi~~~~~~lg~~ig~~~~~~i~~~  511 (573)
                      .              .+.+...+..++.+++.+...|...+...+..|++.||++.|++++...+|+.+++.+.+.+.+.
T Consensus       299 ~--------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~  364 (392)
T PRK12382        299 A--------------PTAWVALAGAALTGAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATS  364 (392)
T ss_pred             c--------------ccHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2              13344555667888888888888888888999999999999999999999999999999998764


Q ss_pred             hccCccccccccchhhHHHHHHHHHHHHHHHHHHHH
Q 008231          512 TNKHWLRSNLNKGKLNNFYWLLAVLGLLNFMVFLFF  547 (573)
Q Consensus       512 ~~~~w~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~  547 (573)
                      .+            +...|++.+++.+++.++.+..
T Consensus       365 ~g------------~~~~~~~~~~~~~~~~~~~~~~  388 (392)
T PRK12382        365 FG------------YPSVFLAGAISAVLGIIVTILS  388 (392)
T ss_pred             hC------------chHHHHHHHHHHHHHHHHHHhh
Confidence            31            3456677777666666655443

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.95  E-value=5.1e-25  Score=232.38  Aligned_cols=347  Identities=13%  Similarity=0.080  Sum_probs=235.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHH
Q 008231           36 GLILGTELSERICAMGISMNLVTYLVGDLHLSSAKSATIVTNFMGTLNLLGLLGGFLADAKLGRYLTVAIFASVTALVVG  115 (573)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~  115 (573)
                      ++++...++...+++.+.++++.|+++++|+|..+.|++.+.+.+...+..+++|+++||+ |||+++.++..+.+++.+
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~-g~k~~l~~~~~~~~~~~~   91 (400)
T PRK11646         13 YFLLIDNMLVVLGFFVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRF-GAKPMIVTGMLMRAAGFA   91 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHh-CchHHHHHHHHHHHHHHH
Confidence            7778889999999999999999999999999999999999999999999999999999998 999999999999999998


Q ss_pred             HHHhhccCCCCCCCCCccccccccccccchhhHHHHHHHHHHHHHhcCccccccccccccCCCCCCCchHHHhHHHHHHH
Q 008231          116 LLTSATSIPSMRPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKAMIFFFNR  195 (573)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  195 (573)
                      ++.+++                          +.+.+++.|++.|++.+...+...+++.|.+|+++      |+++.++
T Consensus        92 ~~~~~~--------------------------~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~a~~~  139 (400)
T PRK11646         92 TMAIAH--------------------------EPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQ------RGRFFSL  139 (400)
T ss_pred             HHHHhc--------------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH------HHHHHHH
Confidence            887752                          56788899999999998888888999999999887      9999999


Q ss_pred             HHHHHHhhhHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHHHHhcCccccccCCCCCchhHHHHHHHHHHhccCCCCCC
Q 008231          196 FYFAISIGSLFAVIVLVYVQDNVGRGWGYGISAGTMVVAAAILLIGTPWYRFKKPRGSPLTVIWRVLLLAWKKRSHPYPD  275 (573)
Q Consensus       196 ~~~~~~ig~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (573)
                      .+...++|..+||.+++++. .+||+++|++.++..++..+...+..|+.+.+ +..++..                   
T Consensus       140 ~~~~~~~g~~ig~~l~g~l~-~~g~~~~f~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~-------------------  198 (400)
T PRK11646        140 LMMQDSAGAVIGALLGSWLL-QYDFRLVCATGAVLFVLAAAFNAWLLPAYKLS-TVRTPVR-------------------  198 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHHHhCCccccc-ccchhhH-------------------
Confidence            99999999999999999998 68999999988776655544333333321100 0000000                   


Q ss_pred             CCCcchhcccccCCCCCccchhhhhhhhhhhhhhccccCCcccccchhhHHHHHHHHhHH-HHHHHHHHHHHHhhcccch
Q 008231          276 HPSLLNEYQNAKVPHTEKFKCLDKAAIIEDNAVANENKNNSWIVSTVTEVEEVKMVLKLL-PIWATCILFWTVYSQMTTF  354 (573)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~  354 (573)
                                            +                 .+   . ...++ +...... ..+.............+ .
T Consensus       199 ----------------------~-----------------~~---~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p-~  233 (400)
T PRK11646        199 ----------------------E-----------------GM---T-RVLRD-KRFVTYVLTLTGYYMLAVQVMLMLP-I  233 (400)
T ss_pred             ----------------------H-----------------HH---H-HHHcC-chHHHHHHHHHHHHHHHHHHHHhhh-h
Confidence                                  0                 00   0 00001 1111111 11111111111111111 1


Q ss_pred             hhhhhhccccccccceecccccchhhHHHHHHHHHhhhhhhhhhhcccccccCCCchHHHHHHHHHHHHHHHHHHHHHHH
Q 008231          355 TVEQATFMNRKIGSFTVPSGSLSAFLFITILLFTSLNEKVFVPLARKITHSIQGMTSLQRVGTGLIFSVIAMIVSAVIEQ  434 (573)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~i~~i~~~~~~~  434 (573)
                      +..+..+ +      ....+.+.++..+..+......++..+   +|.       +..+.+..+.++.+++++.+.... 
T Consensus       234 ~~~~~~~-~------~~~~g~l~~~~~~~~~~~~~~~~~~~~---~r~-------~~~~~~~~~~~~~~~~~~~l~~~~-  295 (400)
T PRK11646        234 MVNDIAG-S------PSAVKWMYAIEACLSLTLLYPIARWSE---KRF-------RLEHRLMAGLLIMSLSMFPIGMVS-  295 (400)
T ss_pred             hHHhhcC-C------chHHHHHHHHHHHHHHHHHHHHHHHHH---Hhc-------chhHHHHHHHHHHHHHHHHHHHhh-
Confidence            1111101 0      111223333333333322222233322   111       122235666666666666554431 


Q ss_pred             HHHhhcccCCcccchhHHHHHHHHHHHHHHhhhhhhhheeecccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 008231          435 QRRETSVQKHIQISAFWLVPQYFLVGAGEAFVYVGQLEFFIREGPERMKSMSTGLFLSAISMGMFVSSMLVSIVDKIT  512 (573)
Q Consensus       435 ~~~~~~~~~~~~~~~~~lv~~~~l~g~~~~~~~~~~~~~~~~~~p~~~rg~~~gi~~~~~~lg~~ig~~~~~~i~~~~  512 (573)
                                   +.++++...++.+++.+...|...+++.+.+|++.||+++|+++....+|+.+|+.+.|.+.+.+
T Consensus       296 -------------~~~~~~~~~~l~~~g~~~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~~  360 (400)
T PRK11646        296 -------------NLQQLFTLICLFYIGSIIAEPARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFDLG  360 (400)
T ss_pred             -------------hHHHHHHHHHHHHHHHHHHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHHHH
Confidence                         23344445567788888888898999999999999999999999999999999999999998753

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.95  E-value=7.5e-25  Score=237.52  Aligned_cols=402  Identities=12%  Similarity=0.030  Sum_probs=249.6

Q ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHH
Q 008231           30 GGWLAAGLILGTELSERICAMGISMNLVTYLVGDLHLSSAKSATIVTNFMGTLNLLGLLGGFLADAKLGRYLTVAIFASV  109 (573)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~  109 (573)
                      ++|..+..+++..++...+...+... .+.+.+++|.+..+.+|+.+.|.++..++.+++|+++||+ |||+++.++..+
T Consensus         3 ~~~~~~~~~~~~~~~~~ld~tiv~~a-~p~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~-Grk~~l~~~~~~   80 (495)
T PRK14995          3 RQWLTLVIIVLVYIPVAIDATVLHVA-APTLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRI-GFKRLLMLGGTL   80 (495)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHH
Confidence            45567777788888887777555444 4556789999999999999999999999999999999998 999999999999


Q ss_pred             HHHHHHHHHhhccCCCCCCCCCccccccccccccchhhHHHHHHHHHHHHHhcCccccccccccccCCC-CCCCchHHHh
Q 008231          110 TALVVGLLTSATSIPSMRPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQF-DTSDPKEEKA  188 (573)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~-~~~~~~~~~~  188 (573)
                      ++++.++++++.                          +.+.++++|+++|+|.+...+.....+.+.+ |+++      
T Consensus        81 ~~~~~~~~~~a~--------------------------~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~------  128 (495)
T PRK14995         81 FGLASLAAAFSP--------------------------TASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQ------  128 (495)
T ss_pred             HHHHHHHHHHcC--------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHH------
Confidence            999999999873                          6779999999999999998887777777776 4455      


Q ss_pred             HHHHHHHHHHHHHhhhHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHHHHhcCccccccCCCCCchhHHHH------HH
Q 008231          189 MIFFFNRFYFAISIGSLFAVIVLVYVQDNVGRGWGYGISAGTMVVAAAILLIGTPWYRFKKPRGSPLTVIWR------VL  262 (573)
Q Consensus       189 r~~~~~~~~~~~~ig~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~  262 (573)
                      |+++++++....++|..+||.+++++.+..||||.|++.....++..++..+..|+.++++.+..+......      .+
T Consensus       129 r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~gwr~~f~i~~~~~~~~~~l~~~~l~~~~~~~~~~~d~~g~~~~~~~~~~l  208 (495)
T PRK14995        129 RNMALGVWAAVGSGGAAFGPLVGGILLEHFYWGSVFLINVPIVLVVMGLTARYVPRQAGRRDQPLNLGHALMLIVAILLL  208 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCChHhHHHHHHHHHHH
Confidence            999999999999999999999999999999999999988776666555444444443221111111111000      00


Q ss_pred             HHHHhccCCCCCCCCCcchhcccccCCCCCccchhhhhhhhhhhhhhccccCCcccccchhhHHHHHHHHh-HHHHHHHH
Q 008231          263 LLAWKKRSHPYPDHPSLLNEYQNAKVPHTEKFKCLDKAAIIEDNAVANENKNNSWIVSTVTEVEEVKMVLK-LLPIWATC  341 (573)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~  341 (573)
                      ....+.... ..........           .-........ .....+.+...|..+   ....+.+.... .+..+...
T Consensus       209 ~~~~~~~~~-~~~~~~~~~~-----------~~~~~~~~l~-~f~~~e~~~~~p~~~---~~lf~~~~~~~~~~~~~~~~  272 (495)
T PRK14995        209 VYSAKTALK-GFLSLWVTSL-----------TLLTGALLLG-LFIRTQLAASRPMID---MRLFTHRIILSGVVMAMTAM  272 (495)
T ss_pred             HHHHHhccc-cCCchHHHHH-----------HHHHHHHHHH-HHHHHHhcCCCCCcC---HHHhCCcccHHHHHHHHHHH
Confidence            011111000 0000000000           0000000000 000000011112211   11111122111 11111111


Q ss_pred             HHHHHHhhcccchhhhhhhccccccccceecccccchhhHHHHHHHHHhhhhhhhhhhcccccccCCCchHHHHHHHHHH
Q 008231          342 ILFWTVYSQMTTFTVEQATFMNRKIGSFTVPSGSLSAFLFITILLFTSLNEKVFVPLARKITHSIQGMTSLQRVGTGLIF  421 (573)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~  421 (573)
                      ..++......+ .+.....+.+      ....+.......++..+..++.+++.+|..+|           +.+..|.++
T Consensus       273 ~~~~~~~~~~~-~~lq~v~g~s------~~~ag~~~~~~~~~~~~~~~~~g~l~~r~g~~-----------~~~~~g~~~  334 (495)
T PRK14995        273 ITLVGFELLMA-QELQFVHGLS------PLEAGMFMLPVMVASGFSGPIAGILVSRLGLR-----------LVATGGMAL  334 (495)
T ss_pred             HHHHHHHHHHH-HHHHHHcCCC------HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCch-----------HHHHHHHHH
Confidence            11111111111 1111111111      11233444455566667777777776655433           225667777


Q ss_pred             HHHHHHHHHHHHHHHHhhcccCCcccchhHHHHHHHHHHHHHHhhhhhhhheeecccCchhHHHHHHHHHHHHHHHHHHH
Q 008231          422 SVIAMIVSAVIEQQRRETSVQKHIQISAFWLVPQYFLVGAGEAFVYVGQLEFFIREGPERMKSMSTGLFLSAISMGMFVS  501 (573)
Q Consensus       422 ~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~lv~~~~l~g~~~~~~~~~~~~~~~~~~p~~~rg~~~gi~~~~~~lg~~ig  501 (573)
                      ..++++.+....          . ..+.+......++.|++.+...+.....+.+..|++.+|.+.+++++.+.+|+.+|
T Consensus       335 ~~~~~~~l~~~~----------~-~~~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lG~~~G  403 (495)
T PRK14995        335 SALSFYGLAMTD----------F-STQQWQAWGLMALLGFSAASALLASTSAIMAAAPPEKAAAAGAIETMAYELGAGLG  403 (495)
T ss_pred             HHHHHHHHHHhc----------C-CCchHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCHHhcchHHHHHHHHHHHHHHHH
Confidence            766666554431          1 12333445567888999999888888889999999999999999999999999999


Q ss_pred             HHHHHHHhh
Q 008231          502 SMLVSIVDK  510 (573)
Q Consensus       502 ~~~~~~i~~  510 (573)
                      +.+.+.+.+
T Consensus       404 ~ai~g~i~~  412 (495)
T PRK14995        404 IAIFGLLLS  412 (495)
T ss_pred             HHHHHHHHH
Confidence            999998865

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.95  E-value=2.5e-25  Score=237.42  Aligned_cols=170  Identities=13%  Similarity=0.049  Sum_probs=143.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHH
Q 008231           33 LAAGLILGTELSERICAMGISMNLVTYLVGDLHLSSAKSATIVTNFMGTLNLLGLLGGFLADAKLGRYLTVAIFASVTAL  112 (573)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~  112 (573)
                      +..+..++..++..+..+.....+|.+ .+++|+|..+.+++.+.+.+++.++.+++|+++||+ |||+++.++.++.++
T Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-g~r~~~~~~~~~~~~  100 (434)
T PRK11663         23 HILITMYLGYALFYFTRKSFNAAMPEM-LADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRS-NARYFMGIGLIATGI  100 (434)
T ss_pred             HHHHHHHHHHHHHHHhhhhHHHhhHHH-HHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhc-CCchhHHHHHHHHHH
Confidence            344455555555555555555555554 557999999999999999999999999999999998 999999999999999


Q ss_pred             HHHHHHhhccCCCCCCCCCccccccccccccchhhHHHHHHHHHHHHHhcCccccccccccccCCCCCCCchHHHhHHHH
Q 008231          113 VVGLLTSATSIPSMRPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKAMIFF  192 (573)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~  192 (573)
                      +.++++++                          .+++.+++.|++.|++.|...+...+++.|++|+++      |+++
T Consensus       101 ~~~~~~~~--------------------------~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~------rg~~  148 (434)
T PRK11663        101 INILFGFS--------------------------SSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTE------RGGW  148 (434)
T ss_pred             HHHHHHHH--------------------------hHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHH------HHHH
Confidence            99888876                          367788889999999999888989999999999888      9999


Q ss_pred             HHHHHHHHHhhhHHHHHHhhhhhcccchhHHHHHHHHHHHHHHH
Q 008231          193 FNRFYFAISIGSLFAVIVLVYVQDNVGRGWGYGISAGTMVVAAA  236 (573)
Q Consensus       193 ~~~~~~~~~ig~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~  236 (573)
                      +++++.+.++|..++|.+.+++.+.+|||+.|++.++..++..+
T Consensus       149 ~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~~~i~~~~~~~  192 (434)
T PRK11663        149 WAIWNTAHNVGGALIPLVVGAIALHYGWRYGMMIAGIIAIVVGL  192 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999987765544433

>PRK10504 putative transporter; Provisional

Probab=99.95  E-value=2.3e-24  Score=232.47  Aligned_cols=400  Identities=12%  Similarity=0.051  Sum_probs=244.8

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHH
Q 008231           32 WLAAGLILGTELSERICAMGISMNLVTYLVGDLHLSSAKSATIVTNFMGTLNLLGLLGGFLADAKLGRYLTVAIFASVTA  111 (573)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~  111 (573)
                      .+.++.+..+.++..++.+.+.+.+|.+.+ ++|.|..+.+++.+.+.++..++.+++|+++||+ |||++++.+..+.+
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~r~~~~~~~~~~~   86 (471)
T PRK10504          9 RWQLWIVAFGFFMQSLDTTIVNTALPSMAQ-SLGESPLHMHMVIVSYVLTVAVMLPASGWLADRV-GVRNIFFTAIVLFT   86 (471)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHH-HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-chHHHHHHHHHHHH
Confidence            446788888888888888888887777765 7999999999999999999999999999999998 99999999998888


Q ss_pred             HHHHHHHhhccCCCCCCCCCccccccccccccchhhHHHHHHHHHHHHHhcCccccccccccccCCCCCCCchHHHhHHH
Q 008231          112 LVVGLLTSATSIPSMRPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKAMIF  191 (573)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~  191 (573)
                      ++.+++.++.                          +.+.++++|+++|++.+...+...+++.|.+|+++      |++
T Consensus        87 ~~~~~~~~~~--------------------------~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~  134 (471)
T PRK10504         87 LGSLFCALSG--------------------------TLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQ------YMA  134 (471)
T ss_pred             HHHHHHHHhC--------------------------CHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHH------HHH
Confidence            8888877652                          56788899999999999999999999999999877      999


Q ss_pred             HHHHHHHHHHhhhHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHHHHhcCccccccCCCCCchhHHHHH---HHHHHh-
Q 008231          192 FFNRFYFAISIGSLFAVIVLVYVQDNVGRGWGYGISAGTMVVAAAILLIGTPWYRFKKPRGSPLTVIWRV---LLLAWK-  267 (573)
Q Consensus       192 ~~~~~~~~~~ig~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-  267 (573)
                      +.++.+...++|..+||.+++++.+..|||+.|++......+..+......++.+..+.+.+........   ...... 
T Consensus       135 ~~~~~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~  214 (471)
T PRK10504        135 AMTFVTLPGQVGPLLGPALGGLLVEYASWHWIFLINIPVGIIGAIATLMLMPNYTMQTRRFDLSGFLLLAVGMATLTLAL  214 (471)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhCCCccccCCCCChHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999877665555554444444322221111111100000   000000 


Q ss_pred             ccCCCCCCCCCcchhcccccCCCCCccchh-hhh--hhhhhhhhhccccCCcccccchhhHHHHHHHHhH-HHHHHHHHH
Q 008231          268 KRSHPYPDHPSLLNEYQNAKVPHTEKFKCL-DKA--AIIEDNAVANENKNNSWIVSTVTEVEEVKMVLKL-LPIWATCIL  343 (573)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~  343 (573)
                      ......    .+.          ....... ...  .......++..+ ..+.   ......+.+..... ...++....
T Consensus       215 ~~~~~~----~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~~~l~~~~~~~~~l~~~~~~~~~  276 (471)
T PRK10504        215 DGSKGL----GLS----------PLAIAGLVAVGVVALLLYLLHARNN-NRAL---FSLKLFRTRTFSLGLAGSFAGRIG  276 (471)
T ss_pred             hcCCcC----Ccc----------hHHHHHHHHHHHHHHHHHHHHHhcC-CCCc---cCHHHhcccchHHHHHHHHHHHHH
Confidence            000000    000          0000000 000  000000000000 0011   00011111122111 111111111


Q ss_pred             HHHHhhcccchhhhhhhccccccccceecccccchhhHHHHHHHHHhhhhhhhhhhcccccccCCCchHHHHHHHHHHHH
Q 008231          344 FWTVYSQMTTFTVEQATFMNRKIGSFTVPSGSLSAFLFITILLFTSLNEKVFVPLARKITHSIQGMTSLQRVGTGLIFSV  423 (573)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~  423 (573)
                      + .......+++.....+.+      ....+.+.....++.++..++.+++.+|+.+|           +.+..+.++.+
T Consensus       277 ~-~~~~~~~~~~~~~~~g~~------~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~-----------~~~~~~~~~~~  338 (471)
T PRK10504        277 S-GMLPFMTPVFLQIGLGFS------PFHAGLMMIPMVLGSMGMKRIVVQVVNRFGYR-----------RVLVATTLGLA  338 (471)
T ss_pred             H-HHHHHHHHHHHHHHcCCC------HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCch-----------HHHHHHHHHHH
Confidence            1 111111222222111111      11222333333444444556666665554433           22555666566


Q ss_pred             HHHHHHHHHHHHHHhhcccCCcccchhHHHHHHHHHHHHHHhhhhhhhheeecccCchhHHHHHHHHHHHHHHHHHHHHH
Q 008231          424 IAMIVSAVIEQQRRETSVQKHIQISAFWLVPQYFLVGAGEAFVYVGQLEFFIREGPERMKSMSTGLFLSAISMGMFVSSM  503 (573)
Q Consensus       424 i~~i~~~~~~~~~~~~~~~~~~~~~~~~lv~~~~l~g~~~~~~~~~~~~~~~~~~p~~~rg~~~gi~~~~~~lg~~ig~~  503 (573)
                      ++.+++...          .. ....+++....++.|++.+...+....++.+..|++.+|.++|+.++.+.+|+.+|+.
T Consensus       339 ~~~~~~~~~----------~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~  407 (471)
T PRK10504        339 LVSLLFMLV----------AL-LGWYYLLPFVLFLQGMVNSTRFSSMNTLTLKDLPDNLASSGNSLLSMIMQLSMSIGVT  407 (471)
T ss_pred             HHHHHHHhc----------cc-cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHhccchHHHHHHHHHHHHHHHHH
Confidence            555544432          11 1123333445667778888888888889999999999999999999999999999999


Q ss_pred             HHHHHhhhh
Q 008231          504 LVSIVDKIT  512 (573)
Q Consensus       504 ~~~~i~~~~  512 (573)
                      +.+.+.+..
T Consensus       408 i~g~ll~~~  416 (471)
T PRK10504        408 IAGLLLGLF  416 (471)
T ss_pred             HHHHHHHHh
Confidence            999887643

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.94  E-value=1e-24  Score=230.56  Aligned_cols=359  Identities=14%  Similarity=0.074  Sum_probs=238.1

Q ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHH
Q 008231           30 GGWLAAGLILGTELSERICAMGISMNLVTYLVGDLHLSSAKSATIVTNFMGTLNLLGLLGGFLADAKLGRYLTVAIFASV  109 (573)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~  109 (573)
                      .+|..+.+.....+++.+..+...... +.+.+++|+|..+.+++.+.+.++..++.++.|+++||+ |||+++..+.++
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~   89 (406)
T PRK11551         12 RLALTIGLCFLVALLEGLDLQSAGVAA-PRMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADRI-GRKRILIVSVAL   89 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCchhHHHHHHH
Confidence            455667777777788888776665544 455678999999999999999999999999999999998 999999999998


Q ss_pred             HHHHHHHHHhhccCCCCCCCCCccccccccccccchhhHHHHHHHHHHHHHhcCccccccccccccCCCCCCCchHHHhH
Q 008231          110 TALVVGLLTSATSIPSMRPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKAM  189 (573)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~r  189 (573)
                      ..++.+++.++.                          +.+.+++.|++.|++.+...+...+++.|++|+++      |
T Consensus        90 ~~~~~~~~~~~~--------------------------~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------r  137 (406)
T PRK11551         90 FGLFSLATAQAW--------------------------DFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRL------R  137 (406)
T ss_pred             HHHHHHHHHHhc--------------------------cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHH------H
Confidence            888888877753                          56788999999999999999999999999999888      9


Q ss_pred             HHHHHHHHHHHHhhhHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHHHHhcCccccccCCCCCchhHHHHHHHHHHhcc
Q 008231          190 IFFFNRFYFAISIGSLFAVIVLVYVQDNVGRGWGYGISAGTMVVAAAILLIGTPWYRFKKPRGSPLTVIWRVLLLAWKKR  269 (573)
Q Consensus       190 ~~~~~~~~~~~~ig~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (573)
                      ++++++.+.+.++|..+++.+++.+.+..+|+++|++.++..++..+......|+.++.+++++.               
T Consensus       138 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---------------  202 (406)
T PRK11551        138 GTAVSLMYCGVPFGGALASVIGVLAAGDAAWRHIFYVGGVGPLLLVPLLMRWLPESRAFAQAAGA---------------  202 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHHHHHHHHHHHHhCCCChhHHhccCc---------------
Confidence            99999999999999999999999998889999999887665544444333333332111000000               


Q ss_pred             CCCCCCCCCcchhcccccCCCCCccchhhhhhhhhhhhhhccccCCcccccchhhHHHHHHHHhHHHHHHHHHHHHHHhh
Q 008231          270 SHPYPDHPSLLNEYQNAKVPHTEKFKCLDKAAIIEDNAVANENKNNSWIVSTVTEVEEVKMVLKLLPIWATCILFWTVYS  349 (573)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  349 (573)
                          .+                +..+..+.                .+   +..  ...+........+......+....
T Consensus       203 ----~~----------------~~~~~~~~----------------~~---~~~--~~~~~~~~~~~~~~~~~~~~~~~~  241 (406)
T PRK11551        203 ----GK----------------QRAPVLRA----------------LF---GEG--RATATLLLWISYFFTLIVLYFLLN  241 (406)
T ss_pred             ----ch----------------hhhhhHHH----------------Hh---hhh--hhhHHHHHHHHHHHHHHHHHHHHH
Confidence                00                00000000                00   000  001111111111111222222222


Q ss_pred             cccchhhhhhhccccccccceecccccchhhHHHHHHHHHhhhhhhhhhhcccccccCCCchHHHHHHHHHHHHHHHHHH
Q 008231          350 QMTTFTVEQATFMNRKIGSFTVPSGSLSAFLFITILLFTSLNEKVFVPLARKITHSIQGMTSLQRVGTGLIFSVIAMIVS  429 (573)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~i~~i~~  429 (573)
                      +.+.+...  .+.+      ....+.+.....++.++...+.+++.||..+|+.           +..+.+...++++.+
T Consensus       242 ~~p~~~~~--~g~s------~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~-----------~~~~~~~~~~~~~~~  302 (406)
T PRK11551        242 WLPSLLVG--QGLS------RSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRV-----------VLLIYAGILASLAAL  302 (406)
T ss_pred             HHHHHHHh--CCCC------hhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHH-----------HHHHHHHHHHHHHHH
Confidence            22222111  1111      1123344455556666667777777666544421           333444444444333


Q ss_pred             HHHHHHHHhhcccCCcccchhHHHHHHHHHHHHHHhhhhhhhheeecccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008231          430 AVIEQQRRETSVQKHIQISAFWLVPQYFLVGAGEAFVYVGQLEFFIREGPERMKSMSTGLFLSAISMGMFVSSMLVSIVD  509 (573)
Q Consensus       430 ~~~~~~~~~~~~~~~~~~~~~~lv~~~~l~g~~~~~~~~~~~~~~~~~~p~~~rg~~~gi~~~~~~lg~~ig~~~~~~i~  509 (573)
                      ...              .+.+.+....++.+++.....+..+++..+.+|++.||++.|+.+....+|+.+++.+.|.+.
T Consensus       303 ~~~--------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~  368 (406)
T PRK11551        303 AAA--------------PSFAGMLLAGFAAGLFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLL  368 (406)
T ss_pred             Hhc--------------CcHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhh
Confidence            321              123344455566777777777888889999999999999999999999999999999999887


Q ss_pred             hh
Q 008231          510 KI  511 (573)
Q Consensus       510 ~~  511 (573)
                      +.
T Consensus       369 ~~  370 (406)
T PRK11551        369 AL  370 (406)
T ss_pred             cc
Confidence            53

>PRK10054 putative transporter; Provisional

Probab=99.94  E-value=3.8e-25  Score=232.93  Aligned_cols=355  Identities=10%  Similarity=0.008  Sum_probs=233.7

Q ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHH
Q 008231           30 GGWLAAGLILGTELSERICAMGISMNLVTYLVGDLHLSSAKSATIVTNFMGTLNLLGLLGGFLADAKLGRYLTVAIFASV  109 (573)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~  109 (573)
                      ..+|.++.++...++...+++.+.++++.|+++++|+|..+.+++.+.+.+.+.+++++.|+++||+ |||+++.++.++
T Consensus         4 ~~~~~~~~l~~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~-g~k~~~~~~~~~   82 (395)
T PRK10054          4 SLRRSTSALLASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKF-DKKRYMLLAITA   82 (395)
T ss_pred             CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CcchhHHHHHHH
Confidence            3456688888999999999999999999999999999999999999999999999999999999998 999999999998


Q ss_pred             HHHHHHHHHhhccCCCCCCCCCccccccccccccchhhHHHHHHHHHHHHHhcCccccccccccccCCCCCCCchHHHhH
Q 008231          110 TALVVGLLTSATSIPSMRPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKAM  189 (573)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~r  189 (573)
                      ..++.+++.+++                          +.+.++++|.+.+.+.+...+...++..|.+|+++      |
T Consensus        83 ~~~~~~~~~~~~--------------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~  130 (395)
T PRK10054         83 FASGFIAIPLVN--------------------------NVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTS------K  130 (395)
T ss_pred             HHHHHHHHHHHh--------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhH------H
Confidence            888888877753                          56677778888888777777888889999999877      9


Q ss_pred             HHHHHHHHHHHHhhhHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHHHHhcCccccccCCCCCchhHHHHHHHHHHhcc
Q 008231          190 IFFFNRFYFAISIGSLFAVIVLVYVQDNVGRGWGYGISAGTMVVAAAILLIGTPWYRFKKPRGSPLTVIWRVLLLAWKKR  269 (573)
Q Consensus       190 ~~~~~~~~~~~~ig~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (573)
                      ++++++.+...++|..+||.+++++.+ .||+.+|++.++..++..+...+..++.++.+++ ++ +.            
T Consensus       131 ~~~~g~~~~~~~lg~~igp~l~~~l~~-~g~~~~f~~~~~~~~i~~i~~~~~~~~~~~~~~~-~~-~~------------  195 (395)
T PRK10054        131 TKIFSLNYTMLNIGWTVGPPLGTLLVM-QSINLPFWLAAICSAFPLVFIQIWVQRSEKAIAT-ET-GS------------  195 (395)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH-hccCcHHHHHHHHHHHHHHHHHHHHhcccccccc-ch-hh------------
Confidence            999999999999999999999999875 7999999988776666554433322221110000 00 00            


Q ss_pred             CCCCCCCCCcchhcccccCCCCCccchhhhhhhhhhhhhhccccCCcccccchhhHHHHHHHH-hHHHHHHHHHHHHHHh
Q 008231          270 SHPYPDHPSLLNEYQNAKVPHTEKFKCLDKAAIIEDNAVANENKNNSWIVSTVTEVEEVKMVL-KLLPIWATCILFWTVY  348 (573)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~~~~~  348 (573)
                                                                    .+   +..+..+.|... .....++.........
T Consensus       196 ----------------------------------------------~~---~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  226 (395)
T PRK10054        196 ----------------------------------------------VW---SPSVLLQDKALLWFTCSGFLASFVSGAFA  226 (395)
T ss_pred             ----------------------------------------------hh---hhhhhccCceehHHHHHHHHHHHHHHHhh
Confidence                                                          00   000000011111 1111111111111111


Q ss_pred             hcccchhhhhhhccccccccceecccccchhhHHHHHHHHHhhhhhhhhhhcccccccCCCchHHHHHHHHHHHHHHHHH
Q 008231          349 SQMTTFTVEQATFMNRKIGSFTVPSGSLSAFLFITILLFTSLNEKVFVPLARKITHSIQGMTSLQRVGTGLIFSVIAMIV  428 (573)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~i~~i~  428 (573)
                      .....+.... .+....    ....+.+........+...+..+++.+    |.       +....+..++++..++++.
T Consensus       227 ~~~~~~~~~~-~~~~~~----~~~~g~~~~~~~~~~~~~~~~~g~~~~----~~-------~~~~~l~~~~~~~~~~~~~  290 (395)
T PRK10054        227 SCISQYVMVV-ADSDFA----EKVVAVVLPVNAAMVVSLQYSVGRRLN----AA-------NIRPLMTAGTLCFVIGLVG  290 (395)
T ss_pred             hhHHHHHHHh-cccchH----HHHHHHHHHhhhhheeeehhHHHHHHc----cC-------CchhHHHHHHHHHHHHHHH
Confidence            1111111111 010000    001112222222222233333334332    22       1123356666666666655


Q ss_pred             HHHHHHHHHhhcccCCcccchhHHHHHHHHHHHHHHhhhhhhhheeecccCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008231          429 SAVIEQQRRETSVQKHIQISAFWLVPQYFLVGAGEAFVYVGQLEFFIREGPERMKSMSTGLFLSAISMGMFVSSMLVSIV  508 (573)
Q Consensus       429 ~~~~~~~~~~~~~~~~~~~~~~~lv~~~~l~g~~~~~~~~~~~~~~~~~~p~~~rg~~~gi~~~~~~lg~~ig~~~~~~i  508 (573)
                      +....             .+.+.+.+..++.++|+....|...+++.+..|++.+|++.+..+ ...+|..+||.+.|++
T Consensus       291 ~~~~~-------------~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~p~~~~~~~~~~~~-~~~~G~~~Gp~~~G~l  356 (395)
T PRK10054        291 FIFSG-------------NSLLLWGMSAAVFTVGEIIYAPGEYMLIDHIAPPGMKASYFSAQS-LGWLGAAINPLVSGVI  356 (395)
T ss_pred             HHHcc-------------hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCcccceehHhHHH-HHHHHHHHHHHHHHHH
Confidence            54321             133334556778899998888998999999999999999998765 5678999999999999


Q ss_pred             hhh
Q 008231          509 DKI  511 (573)
Q Consensus       509 ~~~  511 (573)
                      .+.
T Consensus       357 ~~~  359 (395)
T PRK10054        357 LTT  359 (395)
T ss_pred             HHH
Confidence            874

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.94  E-value=8.3e-25  Score=242.91  Aligned_cols=177  Identities=13%  Similarity=0.025  Sum_probs=142.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHH
Q 008231           34 AAGLILGTELSERICAMGISMNLVTYLVGDLHLSSAKSATIVTNFMGTLNLLGLLGGFLADAKLGRYLTVAIFASVTALV  113 (573)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~  113 (573)
                      .+.++.++.+...+... +.+.+.+++.+++|++..+.+++.+++.++..++.+++|+++||+ |||+++++++++.+++
T Consensus       168 l~~i~~l~~~~~g~d~~-~is~ilp~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~-GRR~~lii~lil~~i~  245 (742)
T TIGR01299       168 LFFVLGLALMADGVEVF-VVGFVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKL-GRKQCLLICLSVNGFF  245 (742)
T ss_pred             HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHHH
Confidence            33444444444444443 344555677889999999999999999999999999999999998 9999999999999999


Q ss_pred             HHHHHhhccCCCCCCCCCccccccccccccchhhHHHHHHHHHHHHHhcCccccccccccccCCCCCCCchHHHhHHHHH
Q 008231          114 VGLLTSATSIPSMRPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKAMIFFF  193 (573)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  193 (573)
                      .++++++.                          +++.++++|++.|+|.++..+...++++|.+|++.      |++.+
T Consensus       246 ~ll~afa~--------------------------s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~------Rg~~~  293 (742)
T TIGR01299       246 AFFSSFVQ--------------------------GYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEK------RGEHL  293 (742)
T ss_pred             HHHHHHHh--------------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH------HHHHH
Confidence            98888763                          67789999999999999999999999999999888      99999


Q ss_pred             HHHHHHHHhhhHHHHHHhhhhhcc-------------cchhHHHHHHHHHHHHHHHHHHhcCccc
Q 008231          194 NRFYFAISIGSLFAVIVLVYVQDN-------------VGRGWGYGISAGTMVVAAAILLIGTPWY  245 (573)
Q Consensus       194 ~~~~~~~~ig~~~~~~~~~~l~~~-------------~g~~~~f~~~~~~~~~~~~~~~~~~~~~  245 (573)
                      ++++....+|.++++.++.++...             .+||+.+++.++..++.++.. +..|+.
T Consensus       294 g~~~~~~~iG~ila~~la~~il~~~G~~~~~g~~~~~~gWR~l~~i~~lp~ll~ll~~-~~lPES  357 (742)
T TIGR01299       294 SWLCMFWMIGGIYAAAMAWAIIPHYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGAL-TFMPES  357 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccchhccccccccccHHHHHHHHHHHHHHHHHHH-HHcCCC
Confidence            999999999999999877665432             368988887776655554433 334544

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.94  E-value=1.8e-24  Score=229.00  Aligned_cols=181  Identities=13%  Similarity=0.014  Sum_probs=153.5

Q ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHH
Q 008231           30 GGWLAAGLILGTELSERICAMGISMNLVTYLVGDLHLSSAKSATIVTNFMGTLNLLGLLGGFLADAKLGRYLTVAIFASV  109 (573)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~  109 (573)
                      .+|+.++.+.+..+++.++...+ ++..+.+++++|+|..+.+++.+.+.+++.+++++.|+++||+ |||+++..++++
T Consensus         5 ~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-G~r~~~~~~~~~   82 (412)
T TIGR02332         5 LFRRLIIFLFILFIFSFLDRINI-GFAGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAII-GARRWIAGIMVL   82 (412)
T ss_pred             ehhHHHHHHHHHHHHHHhhhhhH-HHHHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHh-ChHHHHHHHHHH
Confidence            46666777777777777766554 4455589999999999999999999999999999999999998 999999999999


Q ss_pred             HHHHHHHHHhhccCCCCCCCCCccccccccccccchhhHHHHHHHHHHHHHhcCccccccccccccCCCCCCCchHHHhH
Q 008231          110 TALVVGLLTSATSIPSMRPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKAM  189 (573)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~r  189 (573)
                      +.++..++++++                          +.+.+++.|++.|++.+...|...+++.|++|+++      |
T Consensus        83 ~~~~~~~~~~~~--------------------------~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------r  130 (412)
T TIGR02332        83 WGIASTATMFAT--------------------------GPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYF------R  130 (412)
T ss_pred             HHHHHHHHHHhc--------------------------CHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHH------H
Confidence            999999998863                          56789999999999999999988899999999888      9


Q ss_pred             HHHHHHHHHHHHhhhHHHHHHhhhhhc------ccchhHHHHHHHHHHHHHHHHHHhcCcc
Q 008231          190 IFFFNRFYFAISIGSLFAVIVLVYVQD------NVGRGWGYGISAGTMVVAAAILLIGTPW  244 (573)
Q Consensus       190 ~~~~~~~~~~~~ig~~~~~~~~~~l~~------~~g~~~~f~~~~~~~~~~~~~~~~~~~~  244 (573)
                      +++.++++.+.++|..+++.+++++.+      ..|||++|++.++..++..+++++..|+
T Consensus       131 g~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~  191 (412)
T TIGR02332       131 ARANALFMIAMPVTMALGLILSGYILALDGLMALKGWQWLFLLEGFPSVILGVMTWFWLDD  191 (412)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccchhHHHHHHHHHHHHHHHHHhhccCC
Confidence            999999999999999999999998863      4699999998777665544444444443

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.94  E-value=3.5e-24  Score=228.40  Aligned_cols=178  Identities=19%  Similarity=0.124  Sum_probs=137.0

Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC---CCchhhhHHHHHHHHHHH---HHHhHHHHHhhhccchhHHHH
Q 008231           31 GWLAAGLILGTELSERICAMGISMNLVTYLVGDLH---LSSAKSATIVTNFMGTLN---LLGLLGGFLADAKLGRYLTVA  104 (573)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~---~s~~~~~~~~~~~~~~~~---~~~~~~G~laDr~~Grr~~~~  104 (573)
                      +++.+....++.+++.++... .+++.+++.++++   .+..+.+.+.+.+...+.   ++++++|+++||+ |||+++.
T Consensus        20 ~~~~~~~~~~~~~~~~~d~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~-Grr~~l~   97 (432)
T PRK10406         20 RIWAIVGASSGNLVEWFDFYV-YSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKH-GRKKSML   97 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcHHHHH
Confidence            444555566678888888755 6677788888885   555555555555544444   9999999999999 9999999


Q ss_pred             HHHHHHHHHHHHHHhhccCCCCCCCCCccccccccccccchhhHHHHHHHHHHHHHhcCccccccccccccCCCCCCCch
Q 008231          105 IFASVTALVVGLLTSATSIPSMRPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPK  184 (573)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~~  184 (573)
                      ++..++++++++++++.++....                  ......+++.|+++|++.|+..+...++++|++|+++  
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~--  157 (432)
T PRK10406         98 ISVCMMCFGSLVIACLPGYETIG------------------TWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGR--  157 (432)
T ss_pred             HHHHHHHHHHHHHhhcCCchhHH------------------HHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCc--
Confidence            99999999999998874321000                  0134568899999999999999999999999999988  


Q ss_pred             HHHhHHHHHHHHHHHHHhhhHHHHHHhhhhh--------cccchhHHHHHHHHHHHHH
Q 008231          185 EEKAMIFFFNRFYFAISIGSLFAVIVLVYVQ--------DNVGRGWGYGISAGTMVVA  234 (573)
Q Consensus       185 ~~~~r~~~~~~~~~~~~ig~~~~~~~~~~l~--------~~~g~~~~f~~~~~~~~~~  234 (573)
                          |+++.++.+.+.+.|..+++++...+.        +.+|||++|++.++..++.
T Consensus       158 ----rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~  211 (432)
T PRK10406        158 ----KGFYASFQYVTLIGGQLLALLVVVVLQQTLEDAELREWGWRIPFALGAVLAVVA  211 (432)
T ss_pred             ----ccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHH
Confidence                999999998888899888887765543        2579999999876655443

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.94  E-value=1.2e-24  Score=230.90  Aligned_cols=390  Identities=13%  Similarity=0.030  Sum_probs=243.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHH
Q 008231           36 GLILGTELSERICAMGISMNLVTYLVGDLHLSSAKSATIVTNFMGTLNLLGLLGGFLADAKLGRYLTVAIFASVTALVVG  115 (573)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~  115 (573)
                      ..++...++..++.......+|.+. ++++.+..+.|++.+.+.++..+++++.|+++||+ |||+++.++..+.+++..
T Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~-g~~~~l~~~~~~~~~~~~   97 (417)
T PRK10489         20 RAVFIARFISIFGLGLLGVAVPVQI-QMMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRY-DRKKLILLARGTCGLGFI   97 (417)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHH-HHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhc-CCceEEEehHHHHHHHHH
Confidence            3444455566666555555555554 56788999999999999999999999999999998 999999988887777766


Q ss_pred             HHHhhccCCCCCCCCCccccccccccccchhhHHHHHHHHHHHHHhcCccccccccccccCCCCCCCchHHHhHHHHHHH
Q 008231          116 LLTSATSIPSMRPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKAMIFFFNR  195 (573)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  195 (573)
                      +++......                     ..+++.+++.|++.|++.+...+...+++.|++|+++      |+++.++
T Consensus        98 ~~~~~~~~~---------------------~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~  150 (417)
T PRK10489         98 GLALNAFLP---------------------EPSLLAIYLLGLWDGFFGSLGVTALLAATPALVGREN------LMQAGAI  150 (417)
T ss_pred             HHHHHHHcC---------------------CCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHH------HHHHHHH
Confidence            554311000                     0256778889999999988888888899999999877      9999999


Q ss_pred             HHHHHHhhhHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHHHHhcCccccccCCC-CCchhHHHHHHHHHHhccCCCCC
Q 008231          196 FYFAISIGSLFAVIVLVYVQDNVGRGWGYGISAGTMVVAAAILLIGTPWYRFKKPR-GSPLTVIWRVLLLAWKKRSHPYP  274 (573)
Q Consensus       196 ~~~~~~ig~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  274 (573)
                      .+...++|..+||.+++++.+..||++.|++.++..++..+..+. .|+.++++.+ .++..+                 
T Consensus       151 ~~~~~~~g~~~g~~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~~~~~-----------------  212 (417)
T PRK10489        151 TMLTVRLGSVISPALGGLLIAAGGVAWNYGLAAAGTFITLLPLLR-LPALPPPPQPREHPLRS-----------------  212 (417)
T ss_pred             HHHHHhHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh-CCCCCCCCcccccchHH-----------------
Confidence            999999999999999999998889999998877666555444332 2221110000 000000                 


Q ss_pred             CCCCcchhcccccCCCCCccchhhhhhhhhhhhhhccccCCcccccchhhHHHHHHHHhHHHHHHHHHHHHHHhhcccch
Q 008231          275 DHPSLLNEYQNAKVPHTEKFKCLDKAAIIEDNAVANENKNNSWIVSTVTEVEEVKMVLKLLPIWATCILFWTVYSQMTTF  354 (573)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  354 (573)
                                           ..+                 .+     ....+.+.....+................+. 
T Consensus       213 ---------------------~~~-----------------~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-  248 (417)
T PRK10489        213 ---------------------LLA-----------------GF-----RFLLASPVVGGIALLGGLLTMASAVRVLYPA-  248 (417)
T ss_pred             ---------------------HHH-----------------HH-----HHHHcChHHHHHHHHHHHHHHHHhHHHhhHH-
Confidence                                 000                 00     0000111111111111111111111111111 


Q ss_pred             hhhhhhccccccccceecccccchhhHHHHHHHHHhhhhhhhhhhcccccccCCCchHHHHHHHHHHHHHHHHHHHHHHH
Q 008231          355 TVEQATFMNRKIGSFTVPSGSLSAFLFITILLFTSLNEKVFVPLARKITHSIQGMTSLQRVGTGLIFSVIAMIVSAVIEQ  434 (573)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~i~~i~~~~~~~  434 (573)
                      +..+..+.+      ....+.+.....++.++...+.+++.+    |..       ..+.+..+.++..++++++...  
T Consensus       249 ~~~~~~g~~------~~~~g~~~~~~~~g~~ig~~~~~~l~~----~~~-------~~~~l~~~~~~~~~~~~~~~~~--  309 (417)
T PRK10489        249 LADEVWQMG------AAQIGLLYAAVPLGAALGALTSGWLAH----SAR-------PGLLMLLSTLGSFLAVGLFGLM--  309 (417)
T ss_pred             HHHhccCCC------hhHhHHHHHHHHHHHHHHHHHHHHhhh----ccC-------cchHHHHHHHHHHHHHHHHHcc--
Confidence            111111111      112334444555555555656555532    211       1122555666666665554432  


Q ss_pred             HHHhhcccCCcccchhHHHHHHHHHHHHHHhhhhhhhheeecccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 008231          435 QRRETSVQKHIQISAFWLVPQYFLVGAGEAFVYVGQLEFFIREGPERMKSMSTGLFLSAISMGMFVSSMLVSIVDKITNK  514 (573)
Q Consensus       435 ~~~~~~~~~~~~~~~~~lv~~~~l~g~~~~~~~~~~~~~~~~~~p~~~rg~~~gi~~~~~~lg~~ig~~~~~~i~~~~~~  514 (573)
                                  .+.+......++.|++.+...+...+++.+..|++.||++.|+++...++|+.+|+.+.|.+.+..+ 
T Consensus       310 ------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g-  376 (417)
T PRK10489        310 ------------PMWILAVLCLALFGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMMT-  376 (417)
T ss_pred             ------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhc-
Confidence                        1334455566777888877778888899999999999999999999999999999999999986421 


Q ss_pred             CccccccccchhhHHHHHHHHHHHHHHHHHHHHHhhcchhhhccc
Q 008231          515 HWLRSNLNKGKLNNFYWLLAVLGLLNFMVFLFFAMKHQYNVQHRV  559 (573)
Q Consensus       515 ~w~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~  559 (573)
                                 ....++..+++.++..++.....++.|++++++.
T Consensus       377 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  410 (417)
T PRK10489        377 -----------PVASASASGFGLLIIGVLLLLVLGELRRFRQTPP  410 (417)
T ss_pred             -----------hhhHHHHHHHHHHHHHHHHHHhcccccccccccc
Confidence                       2234555565655655666666666666554443

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.94  E-value=4.6e-25  Score=221.23  Aligned_cols=404  Identities=12%  Similarity=0.020  Sum_probs=265.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH---HHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHH
Q 008231           34 AAGLILGTELSERICAMGISMN---LVTYLVGDLHLSSAKSATIVTNFMGTLNLLGLLGGFLADAKLGRYLTVAIFASVT  110 (573)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~---l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~  110 (573)
                      --+.++...++...+||.+...   ..+++.++.++|.+|.|.+.+.+.+.+.++..+.|.++||. +.|+.+.+++++.
T Consensus        26 ~r~qif~~~fiGYa~fYl~RknF~~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~-npr~fm~~gLils  104 (448)
T COG2271          26 WRIQIFLSIFIGYAAFYLTRKNFNLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRS-NPRYFMAFGLILS  104 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHhhccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccC-CCceeehHHHHHH
Confidence            3477888888999999987654   57789999999999999999999999999999999999998 9999999999999


Q ss_pred             HHHHHHHHhhccCCCCCCCCCccccccccccccchhhHHHHHHHHHHHHHhcCccccccccccccCCCCCCCchHHHhHH
Q 008231          111 ALVVGLLTSATSIPSMRPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKAMI  190 (573)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~  190 (573)
                      ++..+++.+++                          ++..+.+..++.|..+|+-.|.+...++.+++++|      ||
T Consensus       105 ai~nil~Gfs~--------------------------s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~e------RG  152 (448)
T COG2271         105 AIVNILFGFSP--------------------------SLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKE------RG  152 (448)
T ss_pred             HHHHHHHhhhh--------------------------HHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccc------cC
Confidence            99999999974                          56788888999999999999999999999999999      99


Q ss_pred             HHHHHHHHHHHhhhHHHHHHh--hhhhcccchhHHHHHHHHHHHHHHHHHHhcCccccccCCCCCchhHHHHHHHHHHhc
Q 008231          191 FFFNRFYFAISIGSLFAVIVL--VYVQDNVGRGWGYGISAGTMVVAAAILLIGTPWYRFKKPRGSPLTVIWRVLLLAWKK  268 (573)
Q Consensus       191 ~~~~~~~~~~~ig~~~~~~~~--~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (573)
                      +..++++.+-|+|+.+.|++.  +++....+||..|+++++++++..++.++..+..++    ..-++++.+        
T Consensus       153 ~~~siWn~shNiGGal~~~~~~la~~~~~~~w~~~f~~pgiiaiival~~~~~~rd~Pq----s~GLP~ie~--------  220 (448)
T COG2271         153 TWWSIWNTSHNIGGALAPLVALLAFFAFHGGWRAAFYFPGIIAIIVALILLFLLRDRPQ----SEGLPPIEE--------  220 (448)
T ss_pred             ceEEEehhhhhcccchHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhCCCcc----ccCCCCHHH--------
Confidence            999999999999999999999  899888899999999998777665554444432222    111111000        


Q ss_pred             cCCCCCCCCCcchhcccccCCCCCccchhhhhhhhhhhhhhccccCCcccccchhhHHHHHHHHhHHHHHHHHHHHHHHh
Q 008231          269 RSHPYPDHPSLLNEYQNAKVPHTEKFKCLDKAAIIEDNAVANENKNNSWIVSTVTEVEEVKMVLKLLPIWATCILFWTVY  348 (573)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  348 (573)
                      .+.+.++    .++     .+++++                   .-..|+......++++...+..+...+.-++-+...
T Consensus       221 ~~~d~~e----~~~-----~~~~~~-------------------~ls~~~i~~~YVL~Nk~iW~la~a~vfvYivR~gi~  272 (448)
T COG2271         221 YRGDPLE----IYE-----EEKENE-------------------GLTAWQIFVKYVLKNKLIWLLALANVFVYVVRYGIN  272 (448)
T ss_pred             hhcCchh----hhh-----hhccCC-------------------CccHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHh
Confidence            0000000    000     000000                   001111111112222223333333334444444555


Q ss_pred             hcccchhhhhhhccccccccceecccccchhhHHHHHHHHHhhhhhhhhhhcccccccCCCchHHHHHHHHHHHHHHHHH
Q 008231          349 SQMTTFTVEQATFMNRKIGSFTVPSGSLSAFLFITILLFTSLNEKVFVPLARKITHSIQGMTSLQRVGTGLIFSVIAMIV  428 (573)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~i~~i~  428 (573)
                      .+.+.++.+ ..+++..      .+.+..+..-.+.+....+.+|+.|++.+.+..      +.  -.+.++...++++.
T Consensus       273 dW~p~YL~e-~k~~s~~------~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~------p~--~~i~~~~i~~~~~~  337 (448)
T COG2271         273 DWGPLYLSE-VKGFSLV------KANWAISLFEVAGLPGTLLAGWLSDKLFKGRRG------PM--ALIFMLLITASLVL  337 (448)
T ss_pred             hhHHHHHHH-hcCCCHH------HHHHHHHHHHHHhhHHHHHHHHHHHHhcccccc------hH--HHHHHHHHHHHHHH
Confidence            555554444 3343322      344555666677778888888998887644321      10  11222222222222


Q ss_pred             HHHHHHHHHhhcccCCcccchhHHHHHHHHHHHHHHhhhhhhhheeecccCchhHHHHHHHHHHHHHH-HHHHHHHHHHH
Q 008231          429 SAVIEQQRRETSVQKHIQISAFWLVPQYFLVGAGEAFVYVGQLEFFIREGPERMKSMSTGLFLSAISM-GMFVSSMLVSI  507 (573)
Q Consensus       429 ~~~~~~~~~~~~~~~~~~~~~~~lv~~~~l~g~~~~~~~~~~~~~~~~~~p~~~rg~~~gi~~~~~~l-g~~ig~~~~~~  507 (573)
                      +-..            ...+.+.....+++.|+......-..-..+.|.+|++..|++.|+...+.++ |...+....|+
T Consensus       338 ~w~~------------~~~~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~~~~g~  405 (448)
T COG2271         338 YWLA------------PNGSYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPKKAAGTATGFVGLFAYLIGAALAGLPLGY  405 (448)
T ss_pred             HHcC------------CCccHHHHHHHHHHHHHHHhhHHHHHHHHHhccccHhhccchhchhhhHHHHhhHHhcCCccee
Confidence            2221            1123344444444444433222223334577999999999999999999988 88888888887


Q ss_pred             HhhhhccCccccccccchhhHHHHHHHHHHHHHHHHHHHHHh
Q 008231          508 VDKITNKHWLRSNLNKGKLNNFYWLLAVLGLLNFMVFLFFAM  549 (573)
Q Consensus       508 i~~~~~~~w~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~  549 (573)
                      +.|..  ||          ...|.++.+.++++.++++...+
T Consensus       406 i~d~~--gW----------~g~Fi~~~~~a~l~~lll~~~~~  435 (448)
T COG2271         406 IADTW--GW----------DGGFIVLSIAALLAILLLLPVWN  435 (448)
T ss_pred             eEecC--CC----------cchHHHHHHHHHHHHHHHHHHHh
Confidence            76642  55          24566666666666665555443

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.94  E-value=8.9e-24  Score=222.43  Aligned_cols=176  Identities=16%  Similarity=0.097  Sum_probs=153.4

Q ss_pred             cccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHH
Q 008231           26 RSKTGGWLAAGLILGTELSERICAMGISMNLVTYLVGDLHLSSAKSATIVTNFMGTLNLLGLLGGFLADAKLGRYLTVAI  105 (573)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~  105 (573)
                      ...+..|+.+..+.+..++.....|...+.+|. +.+++|++..+.++..+.+.+...++.++.|+++||+ |||+++..
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~-grr~~~~~   90 (394)
T PRK10213         13 AITRPNWSAVFSVAFCVACLIIVEFLPVSLLTP-MAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQAT-DRRYVVIL   90 (394)
T ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHHHHhhHHH-HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccc-CcHHHHHH
Confidence            344557777777777777776676666666665 5679999999999999999999999999999999998 99999999


Q ss_pred             HHHHHHHHHHHHHhhccCCCCCCCCCccccccccccccchhhHHHHHHHHHHHHHhcCccccccccccccCCCCCCCchH
Q 008231          106 FASVTALVVGLLTSATSIPSMRPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKE  185 (573)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~~~  185 (573)
                      +..+.+++.+++.++                          .+++.+++.|+++|++.+...+...+++.|++|+++   
T Consensus        91 ~~~~~~~~~~~~~~~--------------------------~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~---  141 (394)
T PRK10213         91 FAVLLTLSCLLVSFA--------------------------NSFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRT---  141 (394)
T ss_pred             HHHHHHHHHHHHHHH--------------------------ChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhH---
Confidence            999999998888875                          367899999999999999999999999999999888   


Q ss_pred             HHhHHHHHHHHHHHHHhhhHHHHHHhhhhhcccchhHHHHHHHHHHHHHH
Q 008231          186 EKAMIFFFNRFYFAISIGSLFAVIVLVYVQDNVGRGWGYGISAGTMVVAA  235 (573)
Q Consensus       186 ~~~r~~~~~~~~~~~~ig~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~  235 (573)
                         |+++.++...+.++|..++|.+++++.+.+|||+.|++.++..++..
T Consensus       142 ---~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l~~~~~  188 (394)
T PRK10213        142 ---VPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAVMGVLCI  188 (394)
T ss_pred             ---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHH
Confidence               99999999999999999999999999999999999998776554443

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.94  E-value=3.2e-24  Score=231.71  Aligned_cols=437  Identities=13%  Similarity=0.013  Sum_probs=248.7

Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc--------CCCchhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHH
Q 008231           31 GWLAAGLILGTELSERICAMGISMNLVTYLVGDL--------HLSSAKSATIVTNFMGTLNLLGLLGGFLADAKLGRYLT  102 (573)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~--------~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~  102 (573)
                      +.+.++...++.+...++...+.+.+ +.+++++        +.+..+.+++.+.+.++..++++++|+++||+ |||++
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~-Grr~~   87 (479)
T PRK10077         10 IFSITLVATLGGLLFGYDTAVISGTV-ESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRF-GRRDS   87 (479)
T ss_pred             HHHHHHHHHHHHHhcCcccceehHhH-HHHHHHhcccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHH
Confidence            44556666666666666654444333 3345554        89999999999999999999999999999998 99999


Q ss_pred             HHHHHHHHHHHHHHHHhhccCCCCCCCCCccccccccccccchhhHHHHHHHHHHHHHhcCccccccccccccCCCCCCC
Q 008231          103 VAIFASVTALVVGLLTSATSIPSMRPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSD  182 (573)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~  182 (573)
                      ++++..++.++.++++++...-.              .-..++......++++|+++|++.|...+...++++|++|+++
T Consensus        88 ~~~~~~l~~i~~~~~~~~~~~~~--------------~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~  153 (479)
T PRK10077         88 LKIAAVLFFISALGSAWPEFGFT--------------SIGPDNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHI  153 (479)
T ss_pred             HHHHHHHHHHHHHHHHhhccccc--------------cccccchhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhh
Confidence            99999999888887776310000              0000111345678899999999999999999999999999988


Q ss_pred             chHHHhHHHHHHHHHHHHHhhhHHHHHHhhhhh--------cccchhHHHHHHHHHHHHHHHHHHhcCccccccCCCCCc
Q 008231          183 PKEEKAMIFFFNRFYFAISIGSLFAVIVLVYVQ--------DNVGRGWGYGISAGTMVVAAAILLIGTPWYRFKKPRGSP  254 (573)
Q Consensus       183 ~~~~~~r~~~~~~~~~~~~ig~~~~~~~~~~l~--------~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (573)
                            |++++++.+.+..+|..+++.+++.+.        +.+|||++|++.++..++..+..+ ..|+.++....+.+
T Consensus       154 ------rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~-~l~~s~~~l~~~~~  226 (479)
T PRK10077        154 ------RGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFLMLLY-FVPETPRYLMSRGK  226 (479)
T ss_pred             ------hhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHHHHHHH-cCCCCcHHHHHcCC
Confidence                  999999999999999999987765443        456999999987766655544333 33432211000111


Q ss_pred             hhHHHHHHHHHHhccCCCCCCCCCcchhcccccCCCCCccchhhhhhhhhhhhhhccccCCcccccchhhHHHHHHHHhH
Q 008231          255 LTVIWRVLLLAWKKRSHPYPDHPSLLNEYQNAKVPHTEKFKCLDKAAIIEDNAVANENKNNSWIVSTVTEVEEVKMVLKL  334 (573)
Q Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  334 (573)
                      .++..+..... .     .+                .+.....+..+.  ..              .... ...+..+..
T Consensus       227 ~~~~~~~~~~~-~-----~~----------------~~~~~~~~~~~~--~~--------------~~~~-~~~~~~~~~  267 (479)
T PRK10077        227 QEQAEGILRKI-M-----GN----------------TLATQALQEIKH--SL--------------DHGR-KTGGKLLMF  267 (479)
T ss_pred             HHHHHHHHHHH-c-----CC----------------hhHHHHHHHHHH--HH--------------HHhh-hhhhhhcch
Confidence            11100000000 0     00                000000000000  00              0000 000011000


Q ss_pred             HHHHHHHHHHHHHhhcccchh--hhhhhcccccccccee-cccccchhhHHHHHHHHHhhhhhhhhhhcccccccCCCch
Q 008231          335 LPIWATCILFWTVYSQMTTFT--VEQATFMNRKIGSFTV-PSGSLSAFLFITILLFTSLNEKVFVPLARKITHSIQGMTS  411 (573)
Q Consensus       335 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~  411 (573)
                      .............+.+...+.  ........... +... ..........+..++..++.+++.||+.||.         
T Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~-g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~---------  337 (479)
T PRK10077        268 GVGVIVIGVMLSVFQQFVGINVVLYYAPEIFKTL-GASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKP---------  337 (479)
T ss_pred             hHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHc-CCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcChH---------
Confidence            000111000011111111100  00000000000 0011 1122233344455566667777776665442         


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCcccchhHHHHHHHHHHHHHHh-hhhhhhheeecccCchhHHHHHHHH
Q 008231          412 LQRVGTGLIFSVIAMIVSAVIEQQRRETSVQKHIQISAFWLVPQYFLVGAGEAF-VYVGQLEFFIREGPERMKSMSTGLF  490 (573)
Q Consensus       412 ~~~~~~g~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~lv~~~~l~g~~~~~-~~~~~~~~~~~~~p~~~rg~~~gi~  490 (573)
                        .+..+.++++++++++.....         . .....+.....++.+.+... ..|..+.++.|.+|++.|++++|+.
T Consensus       338 --~~i~~~~~~~v~~~~l~~~~~---------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~  405 (479)
T PRK10077        338 --LQIIGALGMAIGMFSLGTAFY---------T-QAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIA  405 (479)
T ss_pred             --HHHHhHHHHHHHHHHHHHHHh---------c-CcccHHHHHHHHHHHHHHhccccchhHHHhHhhCChhHHHHHHHHH
Confidence              266777777777766654321         1 11122333344444554443 3377789999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhccCccccccccchhhHHHHHHHHHHHHHHHHHHHHHhhcchhhhc
Q 008231          491 LSAISMGMFVSSMLVSIVDKITNKHWLRSNLNKGKLNNFYWLLAVLGLLNFMVFLFFAMKHQYNVQH  557 (573)
Q Consensus       491 ~~~~~lg~~ig~~~~~~i~~~~~~~w~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~  557 (573)
                      +..+.+++++++.+.+.+.+.   +|+.+..+   ....|++.++++++++++.+++.++.|+++.+
T Consensus       406 ~~~~~~g~~~~~~~~p~~~~~---~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~  466 (479)
T PRK10077        406 VAAQWIANYFVSWTFPMMDKN---SWLVAHFH---NGFSYWIYGCMGVLAALFMWKFVPETKGKTLE  466 (479)
T ss_pred             HHHHHHHHHHHHHHhHHHHhc---cchhhhcc---CccHHHHHHHHHHHHHHHHHhccccCCCCCHH
Confidence            999999999998888766531   23222111   12456666777777777666677776665443

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.94  E-value=7.7e-24  Score=229.38  Aligned_cols=176  Identities=16%  Similarity=0.018  Sum_probs=136.1

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhh-hHH-----HHHHHHHHHHHHhHHHHHhhhccchhHHHHH
Q 008231           32 WLAAGLILGTELSERICAMGISMNLVTYLVGDLHLSSAKS-ATI-----VTNFMGTLNLLGLLGGFLADAKLGRYLTVAI  105 (573)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~-~~~-----~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~  105 (573)
                      ++.+....++.+++.+++.. ..+..+++.++++.+..+. +++     .++..++..+++++.|+++||+ |||+++.+
T Consensus        15 ~~~~~~~~~g~~~~~~d~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~-Grr~~l~~   92 (490)
T PRK10642         15 RKAITAASLGNAMEWFDFGV-YGFVAYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKY-GRQKILAI   92 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccHHHHHH
Confidence            45667777888999888754 5566678888887554332 222     3666788889999999999999 99999999


Q ss_pred             HHHHHHHHHHHHHhhccCCCCCCCCCccccccccccccchhhHHHHHHHHHHHHHhcCccccccccccccCCCCCCCchH
Q 008231          106 FASVTALVVGLLTSATSIPSMRPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKE  185 (573)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~~~  185 (573)
                      +++++++++++++++.++....                  -.....++++|+++|+|.|+..+...++++|++|+++   
T Consensus        93 ~~~l~~i~~~~~a~~~~~~~~g------------------~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~---  151 (490)
T PRK10642         93 TIVIMSISTFCIGLIPSYATIG------------------IWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRK---  151 (490)
T ss_pred             HHHHHHHHHHHHHhcccHHHHH------------------HHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCC---
Confidence            9999999999999975322000                  0011247899999999999999999999999999998   


Q ss_pred             HHhHHHHHHHHHHHHHhhhHHHHHHhhhhh--------cccchhHHHHHHHHHHHH
Q 008231          186 EKAMIFFFNRFYFAISIGSLFAVIVLVYVQ--------DNVGRGWGYGISAGTMVV  233 (573)
Q Consensus       186 ~~~r~~~~~~~~~~~~ig~~~~~~~~~~l~--------~~~g~~~~f~~~~~~~~~  233 (573)
                         |++..++...+..+|..+|+.+...+.        ..+|||++|++.++..++
T Consensus       152 ---Rg~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~~~~~~~gWR~~f~i~~~~~l~  204 (490)
T PRK10642        152 ---RGFMGSWLDFGSIAGFVLGAGVVVLISTIVGEANFLDWGWRIPFFIALPLGII  204 (490)
T ss_pred             ---CcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhcCccHHHHHHHHHHHHHH
Confidence               999999998888888888876654432        257999999987654443

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.94  E-value=2.8e-24  Score=230.82  Aligned_cols=405  Identities=13%  Similarity=0.080  Sum_probs=229.0

Q ss_pred             HHhhhcCCC--------chhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHhhccCCCCCCCC
Q 008231           59 YLVGDLHLS--------SAKSATIVTNFMGTLNLLGLLGGFLADAKLGRYLTVAIFASVTALVVGLLTSATSIPSMRPPQ  130 (573)
Q Consensus        59 yl~~~~~~s--------~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (573)
                      .+..+++++        ..+.+++.+.+.++..++.++.|+++||+ |||+++.++.++..++..++.+..+.       
T Consensus        53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~-grr~~~~~~~~~~~~~~~~~~~~~~~-------  124 (481)
T TIGR00879        53 LPAFEFKFTSANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDRF-GRKKSLLIIALLFVIGAILMGLAAFA-------  124 (481)
T ss_pred             cHHHHHhcCCcccCCCChhHHHHHHHHHHHHHHHHHHHhhHhhhhh-hhHHHHHHHHHHHHHHHHHHHHhccc-------
Confidence            444455555        89999999999999999999999999998 99999999999999998888664321       


Q ss_pred             CccccccccccccchhhHHHHHHHHHHHHHhcCccccccccccccCCCCCCCchHHHhHHHHHHHHHHHHHhhhHHHHHH
Q 008231          131 CDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKAMIFFFNRFYFAISIGSLFAVIV  210 (573)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~~  210 (573)
                                      .+.+.++++|++.|+|.+...+...++++|++|+++      |++++++++.+.++|..+++.+
T Consensus       125 ----------------~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~~~~~~~G~~~~~~~  182 (481)
T TIGR00879       125 ----------------LSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKAL------RGALTSLYQLAITFGILVAYGF  182 (481)
T ss_pred             ----------------cchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhh------hhhhhhHHHHHHHHHHHHHHHH
Confidence                            245688999999999999999999999999999998      9999999999999999999999


Q ss_pred             h---hhhhcccchhHHHHHHHHHHHHHHHHHHhcCccccccCCCCCchhHHHHHHHHHHhccCCCCCCCCCcchhccccc
Q 008231          211 L---VYVQDNVGRGWGYGISAGTMVVAAAILLIGTPWYRFKKPRGSPLTVIWRVLLLAWKKRSHPYPDHPSLLNEYQNAK  287 (573)
Q Consensus       211 ~---~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (573)
                      +   +.+.+..|||++|++.++..++..+..++ .++.+......++.....+.. ...+....  + . ...       
T Consensus       183 ~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~-~-~~~-------  249 (481)
T TIGR00879       183 GSGKVSLNNTLGWRIPLGLQLIPAGLLFLGLFF-LPESPRWLVGKGRVEEARKSL-ARLRGTSG--E-D-KEL-------  249 (481)
T ss_pred             HHHhhcCCCCccHHHHHHHHHHHHHHHHHHHhc-CCCChHHHHHcCChHHHHHHH-HHHhCCCC--C-c-HHH-------
Confidence            9   77777789999999866555444433333 333211100001111101100 00000000  0 0 000       


Q ss_pred             CCCCCccchhhhhhhhhhhhhhccccCCcccccchhhHHHHHHHHhHHHHHHHHHHHHHHhh---cccchhhhhhhcccc
Q 008231          288 VPHTEKFKCLDKAAIIEDNAVANENKNNSWIVSTVTEVEEVKMVLKLLPIWATCILFWTVYS---QMTTFTVEQATFMNR  364 (573)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~  364 (573)
                            .+..+....  ....+.+.....|+..    ....+.. .....+.....++....   ....+..........
T Consensus       250 ------~~~~~~~~~--~~~~~~~~~~~~~~~~----~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  316 (481)
T TIGR00879       250 ------LDELELIDI--KRSIEKRSVQPSWGSL----FSSTRRI-RRRLFLGVVLQWFQQFTGINAIMYYSPTIFENAGV  316 (481)
T ss_pred             ------HHHHHHHHH--HHHHHHhhccccHHHH----HhcCchh-HHHHHHHHHHHHHHHHhCCeehHHHHHHHHHHcCC
Confidence                  000000000  0000000000001000    0000000 00000011111111111   011111111001110


Q ss_pred             ccccceecccccchhhHHHHHHHHHhhhhhhhhhhcccccccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCC
Q 008231          365 KIGSFTVPSGSLSAFLFITILLFTSLNEKVFVPLARKITHSIQGMTSLQRVGTGLIFSVIAMIVSAVIEQQRRETSVQKH  444 (573)
Q Consensus       365 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~i~~i~~~~~~~~~~~~~~~~~  444 (573)
                      +    ............+..++...+.+++.||..+|.           .+..+.++.+++++++......       ..
T Consensus       317 ~----~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~-------~~  374 (481)
T TIGR00879       317 S----TDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRP-----------LLLIGAAGMAICLFVLGILGAS-------FV  374 (481)
T ss_pred             C----chHHHHHHHHHHHHHHHHHHHHHHHHHHhcchH-----------HHHHHHHHHHHHHHHHHHHhhc-------cc
Confidence            0    111233344445555666666777766655442           2455566666666655532110       01


Q ss_pred             cc----cchhHHHHHHHHHHHHHHhhhhhhhheeecccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCccccc
Q 008231          445 IQ----ISAFWLVPQYFLVGAGEAFVYVGQLEFFIREGPERMKSMSTGLFLSAISMGMFVSSMLVSIVDKITNKHWLRSN  520 (573)
Q Consensus       445 ~~----~~~~~lv~~~~l~g~~~~~~~~~~~~~~~~~~p~~~rg~~~gi~~~~~~lg~~ig~~~~~~i~~~~~~~w~~~~  520 (573)
                      .+    ....+++...++.+.......+....++.|..|++.|+++.|+.++..++|+++++.+.+.+.+..  +|    
T Consensus       375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~~--~~----  448 (481)
T TIGR00879       375 TGSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLESI--GV----  448 (481)
T ss_pred             CCcccchhHHHHHHHHHHHHHHHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--Cc----
Confidence            10    022222222222222223344667778899999999999999999999999999999999887542  12    


Q ss_pred             cccchhhHHHHHHHHHHHHHHHHHHHHHhhcch
Q 008231          521 LNKGKLNNFYWLLAVLGLLNFMVFLFFAMKHQY  553 (573)
Q Consensus       521 ~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~  553 (573)
                            ...|+++++++++++++.+++.++.++
T Consensus       449 ------~~~f~~~~~~~~~~~i~~~~~~~~~~~  475 (481)
T TIGR00879       449 ------GGVFIFFGGLNVLGLIFVYFFLPETKG  475 (481)
T ss_pred             ------cceehhHHHHHHHHHHHHheecccCCC
Confidence                  245667777777777766666555443

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.94  E-value=4.9e-24  Score=225.25  Aligned_cols=379  Identities=14%  Similarity=0.084  Sum_probs=243.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchh-----hhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHH
Q 008231           33 LAAGLILGTELSERICAMGISMNLVTYLVGDLHLSSAK-----SATIVTNFMGTLNLLGLLGGFLADAKLGRYLTVAIFA  107 (573)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~-----~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~  107 (573)
                      +....+.+..++..+++....+.+|.|++ ++|++..+     .+++.+.+.+...++.++.|+++||+ |||+++..+.
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~   91 (408)
T PRK09874         14 RNLTVAWLGCFLTGAAFSLVMPFLPLYVE-QLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRK-GRKIMLLRSA   91 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhHHHHHH-HhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-CcHHHHHHHH
Confidence            45667777888888888888888888875 68888765     37888999999999999999999998 9999999999


Q ss_pred             HHHHHHHHHHHhhccCCCCCCCCCccccccccccccchhhHHHHHHHHHHHHHhcCccccccccccccCCCCCCCchHHH
Q 008231          108 SVTALVVGLLTSATSIPSMRPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEK  187 (573)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~~~~~  187 (573)
                      .+.+++..++.++                          .+.+.+++.|++.|++.+. .+...+++.|.+|+++     
T Consensus        92 ~~~~~~~~~~~~~--------------------------~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~-----  139 (408)
T PRK09874         92 LGMGIVMVLMGLA--------------------------QNIWQFLILRALLGLLGGF-VPNANALIATQVPRNK-----  139 (408)
T ss_pred             HHHHHHHHHHHHH--------------------------hhHHHHHHHHHHHHHhhhh-HHhHHHHHHHhcCHhh-----
Confidence            8888888777765                          3677889999999998654 5677788889998887     


Q ss_pred             hHHHHHHHHHHHHHhhhHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHHHHhcCccccccCCCCCchhHHHHHHHHHHh
Q 008231          188 AMIFFFNRFYFAISIGSLFAVIVLVYVQDNVGRGWGYGISAGTMVVAAAILLIGTPWYRFKKPRGSPLTVIWRVLLLAWK  267 (573)
Q Consensus       188 ~r~~~~~~~~~~~~ig~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (573)
                       |+++.++.+.+.++|..++|.+++.+.+..||++.|++.++..++..+...+..++.++..++++. .. .+       
T Consensus       140 -~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~-------  209 (408)
T PRK09874        140 -SGWALGTLSTGGVSGALLGPLAGGLLADSYGLRPVFFITASVLFLCFLVTLFCIRENFQPVSKKEM-LH-MR-------  209 (408)
T ss_pred             -hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhh-hH-HH-------
Confidence             999999999999999999999999999889999999988776665555443333321110000000 00 00       


Q ss_pred             ccCCCCCCCCCcchhcccccCCCCCccchhhhhhhhhhhhhhccccCCcccccchhhHHHHHHHHhHHHHHHHHHHHHHH
Q 008231          268 KRSHPYPDHPSLLNEYQNAKVPHTEKFKCLDKAAIIEDNAVANENKNNSWIVSTVTEVEEVKMVLKLLPIWATCILFWTV  347 (573)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  347 (573)
                                                    +.                 ++     ..++.+.........   ......
T Consensus       210 ------------------------------~~-----------------~~-----~~~~~~~~~~~~~~~---~~~~~~  234 (408)
T PRK09874        210 ------------------------------EV-----------------VT-----SLKNPKLVLSLFVTT---LIIQVA  234 (408)
T ss_pred             ------------------------------HH-----------------HH-----hCcCCchHHHHHHHH---HHHHHH
Confidence                                          00                 00     000001111111010   111111


Q ss_pred             hhcccchhhhhhhccccccccceecccccchhhHHHHHHHHHhhhhhhhhhhcccccccCCCchHHHHHHHHHHHHHHHH
Q 008231          348 YSQMTTFTVEQATFMNRKIGSFTVPSGSLSAFLFITILLFTSLNEKVFVPLARKITHSIQGMTSLQRVGTGLIFSVIAMI  427 (573)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~i~~i  427 (573)
                      .....+.+..................+.+..+..++.++..+..+++.||+.+|+           .+..+.++..++++
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~-----------~~~~~~~~~~~~~~  303 (408)
T PRK09874        235 TGSIAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRIGPEK-----------ILITALIFSVLLLI  303 (408)
T ss_pred             HHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccch-----------hHHHHHHHHHHHHH
Confidence            1111111111100000000000001122233344555566666777766554442           14445555444444


Q ss_pred             HHHHHHHHHHhhcccCCcccchhHHHHHHHHHHHHHHhhhhhhhheeecccCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008231          428 VSAVIEQQRRETSVQKHIQISAFWLVPQYFLVGAGEAFVYVGQLEFFIREGPERMKSMSTGLFLSAISMGMFVSSMLVSI  507 (573)
Q Consensus       428 ~~~~~~~~~~~~~~~~~~~~~~~~lv~~~~l~g~~~~~~~~~~~~~~~~~~p~~~rg~~~gi~~~~~~lg~~ig~~~~~~  507 (573)
                      .....              .+.+.+.+..++.|++.+...|...+.+.+..|++.+|+..++++....+|..+++.+.|.
T Consensus       304 ~~~~~--------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~  369 (408)
T PRK09874        304 PMSFV--------------QTPLQLGILRFLLGAADGALLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAA  369 (408)
T ss_pred             HHHHh--------------ccHHHHHHHHHHHHhhhHhhHHHHHHHHHHhCCcccceeeehHHHHHHHHHHHhhHHHHHH
Confidence            43332              1334445566778888888888888888899999999999999999999999999999998


Q ss_pred             HhhhhccCccccccccchhhHHHHHHHHHHHHHHHHHHHH
Q 008231          508 VDKITNKHWLRSNLNKGKLNNFYWLLAVLGLLNFMVFLFF  547 (573)
Q Consensus       508 i~~~~~~~w~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~  547 (573)
                      +.+..            ++...|++.+++.+++.+..+..
T Consensus       370 l~~~~------------g~~~~f~~~~~~~l~~~~~~~~~  397 (408)
T PRK09874        370 ISANY------------GFRAVFLVTAGVVLFNAVYSWNS  397 (408)
T ss_pred             HHhhc------------chhHHHHHHHHHHHHHHHHHHHH
Confidence            87532            23456777777777766555443

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.94  E-value=7.8e-24  Score=222.88  Aligned_cols=357  Identities=13%  Similarity=0.018  Sum_probs=231.1

Q ss_pred             HHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHhhccCCCCCCC
Q 008231           50 MGISMNLVTYLVGDLHLSSAKSATIVTNFMGTLNLLGLLGGFLADAKLGRYLTVAIFASVTALVVGLLTSATSIPSMRPP  129 (573)
Q Consensus        50 ~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (573)
                      +.+.+ +.+.+++++|+|..+.+++.+.+.+++.+++++.|+++||+ |||+++..+..+++++.+++++++        
T Consensus        26 ~~~~~-~lp~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~-G~r~~l~~~~~l~~~~~~~~~~a~--------   95 (393)
T PRK09705         26 TSVGP-LLPQLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHV-SERRSVAISLLLIAVGALMRELYP--------   95 (393)
T ss_pred             hccch-hHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHh-CchHHHHHHHHHHHHHHHHHHHCc--------
Confidence            44444 44567789999999999999999999999999999999998 999999999999999999999874        


Q ss_pred             CCccccccccccccchhhHHHHHHHHHHHHHhcCccccccccccccCCCCCCCchHHHhHHHHHHHHHHHHHhhhHHHHH
Q 008231          130 QCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKAMIFFFNRFYFAISIGSLFAVI  209 (573)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~  209 (573)
                                        +++.++++|+++|+|.+...+....++.+++| ++      |+++++.+..+.++|..+|+.
T Consensus        96 ------------------~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~~------~~~~~g~~~~~~~~g~~~g~~  150 (393)
T PRK09705         96 ------------------QSALLLSSALLGGVGIGIIQAVMPSVIKRRFQ-QR------TPLVMGLWSAALMGGGGLGAA  150 (393)
T ss_pred             ------------------chHHHHHHHHHHHhHHHHHhhhhhHHHHHHcc-cc------chhHHHHHHHHHHHHHHHHHH
Confidence                              56688999999999999999998999999887 66      999999999999999999999


Q ss_pred             Hhhhhhccc-chhHHHHHHHHHHHHHHHHHHhcCccccccCCCCCchhHHHHHHHHHHhccCCCCCCCCCcchhcccccC
Q 008231          210 VLVYVQDNV-GRGWGYGISAGTMVVAAAILLIGTPWYRFKKPRGSPLTVIWRVLLLAWKKRSHPYPDHPSLLNEYQNAKV  288 (573)
Q Consensus       210 ~~~~l~~~~-g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  288 (573)
                      +++++.+.. +||+.+.+.++..++..+.++...++.   ++++++                  .+.             
T Consensus       151 ~~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~------------------~~~-------------  196 (393)
T PRK09705        151 ITPWLVQHSETWYQTLAWWALPAVVALFAWWWQSARE---VASSHK------------------TTT-------------  196 (393)
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhcCC---CccccC------------------CCc-------------
Confidence            999988775 799887655444333333222221111   100000                  000             


Q ss_pred             CCCCccchhhhhhhhhhhhhhccccCCcccccchhhHHHHHHHHhHHHHHHHHHHHHHHhhcccchhhhhhhcccccccc
Q 008231          289 PHTEKFKCLDKAAIIEDNAVANENKNNSWIVSTVTEVEEVKMVLKLLPIWATCILFWTVYSQMTTFTVEQATFMNRKIGS  368 (573)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  368 (573)
                                                .+.+.     .++.+.....+...+....++....+.+.++..  .+.+     
T Consensus       197 --------------------------~~~~~-----l~~~~~~~l~~~~~~~~~~~~~~~~~lp~~l~~--~g~s-----  238 (393)
T PRK09705        197 --------------------------TPVRV-----VFTPRAWTLGVYFGLINGGYASLIAWLPAFYIE--IGAS-----  238 (393)
T ss_pred             --------------------------CCccc-----ccCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--cCCC-----
Confidence                                      00000     001111111111222223333333334333321  1222     


Q ss_pred             ceecccccchhhHHHHHHHHHhhhhhhhhhhcccccccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCcccc
Q 008231          369 FTVPSGSLSAFLFITILLFTSLNEKVFVPLARKITHSIQGMTSLQRVGTGLIFSVIAMIVSAVIEQQRRETSVQKHIQIS  448 (573)
Q Consensus       369 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~  448 (573)
                       ....+.......++.++...+.+++.+|..+|           +.+..+..+..++++++....          .   .
T Consensus       239 -~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~-----------~~~~~~~~l~~~~~~~~~~~~----------~---~  293 (393)
T PRK09705        239 -AQYSGSLLALMTLGQAAGALLMPAMARHQDRR-----------KLLMLALVLQLVGFCGFIWLP----------L---Q  293 (393)
T ss_pred             -hhhhhHHHHHHHHHHHHHHHHHHHHHhhccch-----------HHHHHHHHHHHHHHHHHHHcc----------c---h
Confidence             11233445556666666667777765443332           224555556555555443321          1   1


Q ss_pred             hhHHHHHHHHHHHHHHhhhhhhhheeeccc-CchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCccccccccchhh
Q 008231          449 AFWLVPQYFLVGAGEAFVYVGQLEFFIREG-PERMKSMSTGLFLSAISMGMFVSSMLVSIVDKITNKHWLRSNLNKGKLN  527 (573)
Q Consensus       449 ~~~lv~~~~l~g~~~~~~~~~~~~~~~~~~-p~~~rg~~~gi~~~~~~lg~~ig~~~~~~i~~~~~~~w~~~~~~~~~~~  527 (573)
                      ...+  ..++.+++.+...|.......+.. |++.+|+..|+.+....++..++|.+.|++.+..+           ++.
T Consensus       294 ~~~~--~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g-----------~~~  360 (393)
T PRK09705        294 LPVL--WAMVCGLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISG-----------NYL  360 (393)
T ss_pred             HHHH--HHHHHHHhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----------Cch
Confidence            1111  123456666666676666666666 46789999999999999999999999999987542           234


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhc
Q 008231          528 NFYWLLAVLGLLNFMVFLFFAMKH  551 (573)
Q Consensus       528 ~~~~~~a~~~~l~~~~~~~~~~~~  551 (573)
                      ..+.+.+.++++..+..+.+.+++
T Consensus       361 ~~~~~~~~~~~~~~~~~~~~~~~~  384 (393)
T PRK09705        361 MDWAFHALCVVGLMIITLRFAPAR  384 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcccc
Confidence            456666666666666666665553

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.94  E-value=6e-24  Score=220.22  Aligned_cols=359  Identities=14%  Similarity=0.062  Sum_probs=235.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHH
Q 008231           37 LILGTELSERICAMGISMNLVTYLVGDLHLSSAKSATIVTNFMGTLNLLGLLGGFLADAKLGRYLTVAIFASVTALVVGL  116 (573)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~  116 (573)
                      .++...++..++.......+|.|.. +++.+..+.+++.+.+.++..++.++.|+++||+ |||+++..+..+..++..+
T Consensus         3 ~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~-g~r~~~~~~~~~~~~~~~~   80 (365)
T TIGR00900         3 LLFAAQLISLIGTAITQVALPLYVL-AGTGSASVLSLAALAGMLPYVVLSPIAGALADRY-DRKKVMIGADLIRAVLVAV   80 (365)
T ss_pred             ehHHHHHHHHHHHHHHHHHHHHHHH-HhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhh-chhHHHHHHHHHHHHHHHH
Confidence            3456666666666666666777665 6899999999999999999999999999999998 9999999999888888777


Q ss_pred             HHhhccCCCCCCCCCccccccccccccchhhHHHHHHHHHHHHHhcCccccccccccccCCCCCCCchHHHhHHHHHHHH
Q 008231          117 LTSATSIPSMRPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKAMIFFFNRF  196 (573)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  196 (573)
                      +.++...+                     ..+.+.++++|++.|++.+...+...+++.|++|+++      |++++++.
T Consensus        81 ~~~~~~~~---------------------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~  133 (365)
T TIGR00900        81 LPFVALLG---------------------GLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQ------LTQANSLS  133 (365)
T ss_pred             HHHHHHcC---------------------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH------HHHHHhHH
Confidence            76653111                     0267789999999999999999999999999999887      99999999


Q ss_pred             HHHHHhhhHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHHHHhcCccccccCCCCCchhHHHHHHHHHHhccCCCCCCC
Q 008231          197 YFAISIGSLFAVIVLVYVQDNVGRGWGYGISAGTMVVAAAILLIGTPWYRFKKPRGSPLTVIWRVLLLAWKKRSHPYPDH  276 (573)
Q Consensus       197 ~~~~~ig~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (573)
                      +.+.++|..++|.+++++.+..||++.|++.++..+++.+......++.+++ ++.++.++                   
T Consensus       134 ~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-------------------  193 (365)
T TIGR00900       134 QAVRSLFYIVGPGIGGLMYATLGIKWAIWVDAVGFAISALLIVSVRIPELAA-SEIQALSN-------------------  193 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcccccCCC-ccccccch-------------------
Confidence            9999999999999999999989999999887766555544433322211110 00000000                   


Q ss_pred             CCcchhcccccCCCCCccchhhhhhhhhhhhhhccccCCcccccchhhHHHHHHHHhHHH-HHHHHHHHHHHhhcccchh
Q 008231          277 PSLLNEYQNAKVPHTEKFKCLDKAAIIEDNAVANENKNNSWIVSTVTEVEEVKMVLKLLP-IWATCILFWTVYSQMTTFT  355 (573)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~  355 (573)
                                     +   ....  .           ...+     +...+.+....... .+..............+.+
T Consensus       194 ---------------~---~~~~--~-----------~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (365)
T TIGR00900       194 ---------------A---VLRD--T-----------REGI-----KFVLKNPLLRTLLLLALLFNLVFAPAIVALFPYV  237 (365)
T ss_pred             ---------------h---HHHH--H-----------HhHH-----HHHHcCcHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence                           0   0000  0           0000     00011111111111 1111111111111111222


Q ss_pred             hhhhhccccccccceecccccchhhHHHHHHHHHhhhhhhhhhhcccccccCCCchHHHHHHHHHHHHHHHHHHHHHHHH
Q 008231          356 VEQATFMNRKIGSFTVPSGSLSAFLFITILLFTSLNEKVFVPLARKITHSIQGMTSLQRVGTGLIFSVIAMIVSAVIEQQ  435 (573)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~i~~i~~~~~~~~  435 (573)
                      ..+..+.+      ....+.+.....++.++...+.+++.++..+|           +.+..+..+.+++++......  
T Consensus       238 ~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~--  298 (365)
T TIGR00900       238 QSKYLGRG------STHYGWVLAAFGLGALLGALLLGLLGRYFKRM-----------ALMTGAIFVIGLAILVVGLTP--  298 (365)
T ss_pred             HHHHhCCc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhchh-----------HHHHHHHHHHHHHHHHHHhhc--
Confidence            22111111      11233344455555566666666654333222           224445555555555444321  


Q ss_pred             HHhhcccCCcccchhHHHHHHHHHHHHHHhhhhhhhheeecccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008231          436 RRETSVQKHIQISAFWLVPQYFLVGAGEAFVYVGQLEFFIREGPERMKSMSTGLFLSAISMGMFVSSMLVSIVDK  510 (573)
Q Consensus       436 ~~~~~~~~~~~~~~~~lv~~~~l~g~~~~~~~~~~~~~~~~~~p~~~rg~~~gi~~~~~~lg~~ig~~~~~~i~~  510 (573)
                                + +.+...+..++.|++.+...+...++..+..|++.||++.|+.++...++..+++.+.|.+.+
T Consensus       299 ----------~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~  362 (365)
T TIGR00900       299 ----------P-NFPLFLVLWFAIGVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLAD  362 (365)
T ss_pred             ----------h-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                      1 245556677888999998899999999999999999999999999999999999999998875

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.93  E-value=6.5e-24  Score=221.82  Aligned_cols=382  Identities=15%  Similarity=0.118  Sum_probs=232.7

Q ss_pred             HHHHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCcc
Q 008231           54 MNLVTYLVGDLHLSSAKSATIVTNFMGTLNLLGLLGGFLADAKLGRYLTVAIFASVTALVVGLLTSATSIPSMRPPQCDD  133 (573)
Q Consensus        54 ~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (573)
                      +...+++.+++|+|..+.+++.+.+.++..++.++.|+++||+ |||+++.++..+.+++..+++++.            
T Consensus        14 ~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~r~~~~~~~~~~~~~~~~~~~~~------------   80 (399)
T TIGR00893        14 SFAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRF-GARKTLAVFIVIWGVFTGLQAFAG------------   80 (399)
T ss_pred             hHhHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhc-CcceeeHHHHHHHHHHHHHHHHHc------------
Confidence            4455568889999999999999999999999999999999998 999999999999999998888763            


Q ss_pred             ccccccccccchhhHHHHHHHHHHHHHhcCccccccccccccCCCCCCCchHHHhHHHHHHHHHHHHHhhhHHHHHHhhh
Q 008231          134 YRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKAMIFFFNRFYFAISIGSLFAVIVLVY  213 (573)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~~~~~  213 (573)
                                    +.+.++++|++.|++.+...+...+++.|++|+++      |++++++.+...++|..++|.++++
T Consensus        81 --------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~~  140 (399)
T TIGR00893        81 --------------AYVSLYILRVLLGAAEAPFFPGIILIVASWFPASE------RATAVSIFNSAQGLGGIIGGPLVGW  140 (399)
T ss_pred             --------------CHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHH------HHHHHHHHHHhchHHHHHHHHHHHH
Confidence                          57789999999999999999999999999999887      9999999999999999999999999


Q ss_pred             hhcccchhHHHHHHHHHHHHHHHHHHhcCccccccCCCCCchhHHHHHHHHHHhccCCCCCCCCCcchhcccccCCCCCc
Q 008231          214 VQDNVGRGWGYGISAGTMVVAAAILLIGTPWYRFKKPRGSPLTVIWRVLLLAWKKRSHPYPDHPSLLNEYQNAKVPHTEK  293 (573)
Q Consensus       214 l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (573)
                      +.+..+|++.|++.++..++..+...+..++.+++++..++..   +       .  ...+...      ++.. ..+  
T Consensus       141 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-------~--~~~~~~~------~~~~-~~~--  199 (399)
T TIGR00893       141 ILIHFSWQWAFIIEGVLGIIWGVLWLKFIPDPPQKAKWLTEEE---K-------Y--IVVGGLL------AEQQ-GKG--  199 (399)
T ss_pred             HHHhCCchHHHHHHHHHHHHHHHHhhheecCCCCccccCCHHH---H-------h--hcchhhc------cccc-ccc--
Confidence            9998999999998777665555544443333222111100000   0       0  0000000      0000 000  


Q ss_pred             cchhhhhhhhhhhhhhccccCCcccccchhhHHHHHHHHhH-HHHHHHHHHHHHHhhcccchhhhhhhccccccccceec
Q 008231          294 FKCLDKAAIIEDNAVANENKNNSWIVSTVTEVEEVKMVLKL-LPIWATCILFWTVYSQMTTFTVEQATFMNRKIGSFTVP  372 (573)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  372 (573)
                                        +....+.  ...+..+.++.... +..+.............+. +..+..+.+      ...
T Consensus       200 ------------------~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~------~~~  252 (399)
T TIGR00893       200 ------------------PSTPKKY--QIKELLKDRRVWGLALGQFLVNIGLGFFLTWFPT-YLVQERGLS------ILE  252 (399)
T ss_pred             ------------------ccCCCcc--chHHHhcCHHHHHHHHHHHHHHhHHHHHHHHHHH-HHHHHhccc------HHH
Confidence                              0000000  00011111222221 1111222222222121221 111111111      112


Q ss_pred             ccccchhhHHHHHHHHHhhhhhhhhhhcccccccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCcccchhHH
Q 008231          373 SGSLSAFLFITILLFTSLNEKVFVPLARKITHSIQGMTSLQRVGTGLIFSVIAMIVSAVIEQQRRETSVQKHIQISAFWL  452 (573)
Q Consensus       373 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~l  452 (573)
                      .+.+.....+..++..++.+++.+|..+|...          +........++.+........       .......+..
T Consensus       253 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~  315 (399)
T TIGR00893       253 AGFMASLPGIVGFIGMILGGRLSDLLLRRGKS----------LVFARKTAIIAGLVLSLLMFA-------TNYVNIPYAA  315 (399)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhhcccc----------hhHHHHHHHHHHHHHHHHHHH-------hccchhHHHH
Confidence            34455556666677777888887777666311          111111111111111110000       0001122222


Q ss_pred             HHHHHHHHHHHHhhhhhhhheeecccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCccccccccchhhHHHHH
Q 008231          453 VPQYFLVGAGEAFVYVGQLEFFIREGPERMKSMSTGLFLSAISMGMFVSSMLVSIVDKITNKHWLRSNLNKGKLNNFYWL  532 (573)
Q Consensus       453 v~~~~l~g~~~~~~~~~~~~~~~~~~p~~~rg~~~gi~~~~~~lg~~ig~~~~~~i~~~~~~~w~~~~~~~~~~~~~~~~  532 (573)
                      +....+.+.+.+ ..+..+++..|..|++.||++.|+.+....+|+.+++.+.|.+.+..           +.+...+++
T Consensus       316 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~-----------g~~~~~~~~  383 (399)
T TIGR00893       316 LALVALGFFGLG-AGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAATT-----------GSFAGALMV  383 (399)
T ss_pred             HHHHHHHHhchh-hhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccCC-----------CchhHHHHH
Confidence            323233333333 67888999999999999999999999999999999999999887532           113456666


Q ss_pred             HHHHHHHHHHHHH
Q 008231          533 LAVLGLLNFMVFL  545 (573)
Q Consensus       533 ~a~~~~l~~~~~~  545 (573)
                      .+++.+++.+..+
T Consensus       384 ~~~~~~~~~~~~~  396 (399)
T TIGR00893       384 VAALALIGALSYL  396 (399)
T ss_pred             HHHHHHHHHHHHH
Confidence            6666666655543

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=99.93  E-value=9.5e-24  Score=219.61  Aligned_cols=353  Identities=12%  Similarity=0.061  Sum_probs=218.5

Q ss_pred             HHHHHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCc
Q 008231           53 SMNLVTYLVGDLHLSSAKSATIVTNFMGTLNLLGLLGGFLADAKLGRYLTVAIFASVTALVVGLLTSATSIPSMRPPQCD  132 (573)
Q Consensus        53 ~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (573)
                      .+...+.+++++|+|..+.+++.+.+.+++.+++++.|+++||+ |||+++..++.....+.. +....           
T Consensus        10 ~~~~lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~-grr~~~~~~~~~~~~~~~-~~~~~-----------   76 (368)
T TIGR00903        10 FSPVLSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRA-FKRWFLFGSLATFAAAAG-RLLDP-----------   76 (368)
T ss_pred             HHhhHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-cchHHHHHHHHHHHHHHH-HHHHh-----------
Confidence            34445566889999999999999999999999999999999998 999887655544444332 22221           


Q ss_pred             cccccccccccchhhHHHHHHHHHHHHHhcCccccccccccccCCCCCCCchHHHhHHHHHHHHHHHHHhhhHHHHHHhh
Q 008231          133 DYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKAMIFFFNRFYFAISIGSLFAVIVLV  212 (573)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~~~~  212 (573)
                                    .++..++++|++.|+|.+.. ++....++|++|+++      |++++++.+.+.++|..+++++++
T Consensus        77 --------------~~~~~l~~~R~l~G~g~~~~-~~~~~~~~~~~~~~~------r~~a~~~~~~~~~lG~~l~~~~~~  135 (368)
T TIGR00903        77 --------------FNYEWLLACQLLAALGQPFL-LNAFAPAASQIREER------RDLVISLLSFAMYLGIIFALAAGL  135 (368)
T ss_pred             --------------ccHHHHHHHHHHHHhHhHHH-HHHHHHHHHHcCHHH------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence                          25778999999999999864 455566799999887      999999999999999999999999


Q ss_pred             hhhcccchhHHHHHHHHHHHHHHHHHHhcCccccccCCCCCchhHHHHHHHHHHhccCCCCCCCCCcchhcccccCCCCC
Q 008231          213 YVQDNVGRGWGYGISAGTMVVAAAILLIGTPWYRFKKPRGSPLTVIWRVLLLAWKKRSHPYPDHPSLLNEYQNAKVPHTE  292 (573)
Q Consensus       213 ~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (573)
                      ++.+.+|||+.|++.++..++..+.+++..|+.++.+++....+                                    
T Consensus       136 ~l~~~~gWr~~f~~~~~l~~~~~~~~~~~lp~~p~~~~~~~~~~------------------------------------  179 (368)
T TIGR00903       136 KIYTAGGLQLLIIPIAAVAAAGIILVLAALPALPFQAAEGFGFK------------------------------------  179 (368)
T ss_pred             HHHHccchHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCcchH------------------------------------
Confidence            99999999999988666655554444444443211110000000                                    


Q ss_pred             ccchhhhhhhhhhhhhhccccCCcccccchhhHHHHHHHHhHHHHHHHHHHHHHHhhcccchhhhhhhccccccccceec
Q 008231          293 KFKCLDKAAIIEDNAVANENKNNSWIVSTVTEVEEVKMVLKLLPIWATCILFWTVYSQMTTFTVEQATFMNRKIGSFTVP  372 (573)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  372 (573)
                        +..+                 ++   + +..+++.........++....++....+.++++...  +.+.       .
T Consensus       180 --~~~~-----------------~~---~-~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~L~~~--g~s~-------~  227 (368)
T TIGR00903       180 --DAVK-----------------EF---G-ALAGRKDLWIIGAILGFGVALFDNLAIWLEAALRPA--GLED-------I  227 (368)
T ss_pred             --HHHH-----------------HH---H-HHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCCh-------H
Confidence              0000                 00   0 001112222333334445555556666666655321  1111       1


Q ss_pred             ccccchhhHHHHHHHHHhhhhhhhhhhcccccccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCcccchhHH
Q 008231          373 SGSLSAFLFITILLFTSLNEKVFVPLARKITHSIQGMTSLQRVGTGLIFSVIAMIVSAVIEQQRRETSVQKHIQISAFWL  452 (573)
Q Consensus       373 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~l  452 (573)
                      .+....+..+.   ......++.|+..||..+      . .......++.++.+..+...           .   +....
T Consensus       228 ~~~~~~l~~~~---g~~g~~~~~d~~~r~~~r------~-~~~~~~~~~~a~~~~~~~~~-----------~---~~~~~  283 (368)
T TIGR00903       228 AGDAVALAILA---GLIGVAVIPDRVARAGLR------S-IYIRAAALLIAAFFLALAFE-----------L---NRLAL  283 (368)
T ss_pred             HHHHHHHHHHH---HHHHHHHhhHHhhhhhhH------H-HHHHHHHHHHHHHHHHHHHc-----------c---ccHHH
Confidence            12222222222   222234454444433111      1 11222223333333332221           1   12223


Q ss_pred             HHHHHHHHHHHHhhhhhhhheeecccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCccccccccchhhHHHHH
Q 008231          453 VPQYFLVGAGEAFVYVGQLEFFIREGPERMKSMSTGLFLSAISMGMFVSSMLVSIVDKITNKHWLRSNLNKGKLNNFYWL  532 (573)
Q Consensus       453 v~~~~l~g~~~~~~~~~~~~~~~~~~p~~~rg~~~gi~~~~~~lg~~ig~~~~~~i~~~~~~~w~~~~~~~~~~~~~~~~  532 (573)
                      +....+.+++.....+..+++..|.+|++.||++.|+.+....+++.+++.+.+.+..              +....|.+
T Consensus       284 ~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~~~--------------~~~~~f~~  349 (368)
T TIGR00903       284 FAFIGIAGLLMLPAYAIIMDWIGKFCDKELHGKAAGAIGFTSRAISVALALAAMLFIS--------------SAEAYFTF  349 (368)
T ss_pred             HHHHHHHHHhhhhhHHHHHHHHHHhcchhhcCcccchhhHHHHHHHHHHHHHHHHHhc--------------CHHHHHHH
Confidence            3344445555555667788899999999999999999999999999999999887752              13456777


Q ss_pred             HHHHHHHHHHHHH
Q 008231          533 LAVLGLLNFMVFL  545 (573)
Q Consensus       533 ~a~~~~l~~~~~~  545 (573)
                      +++..+++++..+
T Consensus       350 ~~~~~~i~~~~~~  362 (368)
T TIGR00903       350 LAILITIAFAIAL  362 (368)
T ss_pred             HHHHHHHHHHHHH
Confidence            7777777766653

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.93  E-value=6.4e-24  Score=225.86  Aligned_cols=166  Identities=17%  Similarity=0.089  Sum_probs=145.6

Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHH
Q 008231           31 GWLAAGLILGTELSERICAMGISMNLVTYLVGDLHLSSAKSATIVTNFMGTLNLLGLLGGFLADAKLGRYLTVAIFASVT  110 (573)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~  110 (573)
                      +++.+....+..+.+.++.+.. .++.+++.+++|+|+.+.+++.+.+.++..+++++.|+++||+ |||+++.++..+.
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~-g~r~~l~~~~~~~   93 (426)
T PRK12307         16 QKNALFSAWLGYVFDGFDFMLI-FYIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKF-GRKPLMMWSIVAY   93 (426)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHH-HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CChHHHHHHHHHH
Confidence            4455666666667777776555 4455677889999999999999999999999999999999998 9999999999999


Q ss_pred             HHHHHHHHhhccCCCCCCCCCccccccccccccchhhHHHHHHHHHHHHHhcCccccccccccccCCCCCCCchHHHhHH
Q 008231          111 ALVVGLLTSATSIPSMRPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKAMI  190 (573)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~  190 (573)
                      +++.++++++                          .+.+.++++|++.|++.+...+....++.|++|+++      |+
T Consensus        94 ~~~~~~~~~~--------------------------~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~------r~  141 (426)
T PRK12307         94 SVGTGLSGLA--------------------------SGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHL------KS  141 (426)
T ss_pred             HHHHHHHHHH--------------------------hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhH------hh
Confidence            9999888886                          367789999999999999999999999999999988      99


Q ss_pred             HHHHHHHHHHHhhhHHHHHHhhhhhcccchhHHHHHHHHH
Q 008231          191 FFFNRFYFAISIGSLFAVIVLVYVQDNVGRGWGYGISAGT  230 (573)
Q Consensus       191 ~~~~~~~~~~~ig~~~~~~~~~~l~~~~g~~~~f~~~~~~  230 (573)
                      ++.++.+.+.++|.++++.+.+.+.+..|||++|++..+.
T Consensus       142 ~~~~~~~~~~~lg~~~~~~l~~~l~~~~~w~~~f~i~~~~  181 (426)
T PRK12307        142 KASAFLVSGFGIGNIIAAYFMPSFAEAYGWRAAFFVGLLP  181 (426)
T ss_pred             HhhhHHHHHHhHHHHHHHHHHHHHcccCCHHHHHHHHHHH
Confidence            9999999999999999999999998889999999875443

>PRK09952 shikimate transporter; Provisional

Probab=99.93  E-value=2.7e-23  Score=221.85  Aligned_cols=180  Identities=12%  Similarity=0.069  Sum_probs=137.7

Q ss_pred             ccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc--CCCchhhhHHHH-----HHHHHHHHHHhHHHHHhhhccch
Q 008231           27 SKTGGWLAAGLILGTELSERICAMGISMNLVTYLVGDL--HLSSAKSATIVT-----NFMGTLNLLGLLGGFLADAKLGR   99 (573)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~--~~s~~~~~~~~~-----~~~~~~~~~~~~~G~laDr~~Gr   99 (573)
                      +...+++.+....++.+++.++...+....+.++.+++  +.++. .+++.+     +..+...++.++.|+++||+ ||
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~-Gr   93 (438)
T PRK09952         16 SLSRARRAALGSFAGAVVDWYDFLLYGITAALVFNREFFPQVSPA-MGTLAAFATFGVGFLFRPLGGVVFGHFGDRL-GR   93 (438)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcH-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhh-cc
Confidence            33455667777888888998888765555566666665  67766 455432     33445667888899999998 99


Q ss_pred             hHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCccccccccccccchhhHHHHHHHHHHHHHhcCccccccccccccCCCC
Q 008231          100 YLTVAIFASVTALVVGLLTSATSIPSMRPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFD  179 (573)
Q Consensus       100 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~  179 (573)
                      |+++.++..+++++++++++++++....                  ......+++.|+++|++.|+..+....++.|++|
T Consensus        94 r~~l~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p  155 (438)
T PRK09952         94 KRMLMLTVWMMGIATALIGLLPSFSTIG------------------WWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAP  155 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCcHHHHH------------------HHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCC
Confidence            9999999999999999999875322000                  0112358889999999999999999999999999


Q ss_pred             CCCchHHHhHHHHHHHHHHHHHhhhHHHHHHhhhhh--------cccchhHHHHHHHHHHH
Q 008231          180 TSDPKEEKAMIFFFNRFYFAISIGSLFAVIVLVYVQ--------DNVGRGWGYGISAGTMV  232 (573)
Q Consensus       180 ~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~~~~~l~--------~~~g~~~~f~~~~~~~~  232 (573)
                      +++      |++..+..+.+..+|..++..+..++.        +.+|||++|++.++..+
T Consensus       156 ~~~------rg~~~~~~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l  210 (438)
T PRK09952        156 KNK------KAFYSSGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVL  210 (438)
T ss_pred             CCC------CcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhccChHHHHHHHHHHHH
Confidence            998      999999999999999998887776654        35799999998766543

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.93  E-value=5.4e-24  Score=228.30  Aligned_cols=372  Identities=12%  Similarity=0.015  Sum_probs=222.9

Q ss_pred             HHHHhhhcCCCchhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCccccc
Q 008231           57 VTYLVGDLHLSSAKSATIVTNFMGTLNLLGLLGGFLADAKLGRYLTVAIFASVTALVVGLLTSATSIPSMRPPQCDDYRR  136 (573)
Q Consensus        57 ~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (573)
                      .+.+.+++|++..+.+++.+.+.+...++.+++|+++||+ |||++++.+.++..++.+++++++               
T Consensus        42 ~~~i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~-g~r~~l~~~~~~~~~~~~~~~~~~---------------  105 (455)
T TIGR00892        42 FKELQQIFQATYSETAWISSIMLAVLYAGGPISSILVNRF-GCRPVVIAGGLLASLGMILASFSS---------------  105 (455)
T ss_pred             HHHHHHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHc-CchHHHHhhHHHHHHHHHHHHHhh---------------
Confidence            3456689999999999999999999999999999999998 999999999999999988888763               


Q ss_pred             cccccccchhhHHHHHHH-HHHHHHhcCccccccccccccCCCCCCCchHHHhHHHHHHHHHHHHHhhhHHHHHHhhhhh
Q 008231          137 KHHQCIEANGKQLAMLYA-ALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKAMIFFFNRFYFAISIGSLFAVIVLVYVQ  215 (573)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~-~~~l~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~~~~~l~  215 (573)
                                 +.+.+++ .|++.|++.+...+...+++.++++ ++      |+++.++.+.+.++|..++|.+++++.
T Consensus       106 -----------~~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~------r~~a~g~~~~~~~~g~~~~~~l~~~l~  167 (455)
T TIGR00892       106 -----------NVIELYLTAGFITGLGLAFNFQPSLTMLGKYFY-RR------RPLANGLAMAGSPVFLSTLAPLNQYLF  167 (455)
T ss_pred             -----------hHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHH-hh------HHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence                       4555554 4688999998776666778888885 56      999999999999999999999999999


Q ss_pred             cccchhHHHHHHHHHHHHHHHHHHhcCccccccCCCCCchhHHHHHHHHHHhccCCCCCCCCCcchhcccccCCCCCccc
Q 008231          216 DNVGRGWGYGISAGTMVVAAAILLIGTPWYRFKKPRGSPLTVIWRVLLLAWKKRSHPYPDHPSLLNEYQNAKVPHTEKFK  295 (573)
Q Consensus       216 ~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (573)
                      +.+|||++|++.++..++..+..++..+.....+.+....             .+...++..          ....+...
T Consensus       168 ~~~gwr~~f~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~----------~~~~~~~~  224 (455)
T TIGR00892       168 ESFGWRGSFLILGGLLLHCCVCGALMRPVGPSQRVSKSKS-------------KEGLPPDGS----------TKKLSKKS  224 (455)
T ss_pred             HHhChHHHHHHHHHHHHHHHHHHHHhCCCCcccccccccc-------------cccCCCCCc----------cccccccc
Confidence            9999999999888766655544444333211100000000             000000000          00000000


Q ss_pred             hhhhhhhhhhhhhhccccCCcccccchhhHHHHHHHHhH-HHHHHHHHHHHHHhhcccchhhhhhhccccccccceeccc
Q 008231          296 CLDKAAIIEDNAVANENKNNSWIVSTVTEVEEVKMVLKL-LPIWATCILFWTVYSQMTTFTVEQATFMNRKIGSFTVPSG  374 (573)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  374 (573)
                      ..              ++..++.  ..... ..+..... ...++....++......+.+. .. .+.+      ....+
T Consensus       225 ~~--------------~~~~~~~--~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~-~~-~g~s------~~~~g  279 (455)
T TIGR00892       225 TA--------------EKINRFL--DFSLF-THRGFLVYLSGNVIMFLGFFAPIIFLVPYA-KD-KGVD------EYEAA  279 (455)
T ss_pred             hh--------------hhhhhhc--chHHh-cCchHHHHHHHHHHHHHHccchHHHHHHHH-HH-cCCC------HHHHH
Confidence            00              0000000  00001 11111111 111111111111111111111 11 1111      11233


Q ss_pred             ccchhhHHHHHHHHHhhhhhhhhhhcccccccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCcccchhHHHH
Q 008231          375 SLSAFLFITILLFTSLNEKVFVPLARKITHSIQGMTSLQRVGTGLIFSVIAMIVSAVIEQQRRETSVQKHIQISAFWLVP  454 (573)
Q Consensus       375 ~~~~~~~~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~lv~  454 (573)
                      .+.++..++.++..++.+++.++...+       .+....+..+.++.+++++.....              .+.+.++.
T Consensus       280 ~~~~~~~~~~~~~~~~~g~l~d~~~~~-------~~~~~~~~~~~~~~~l~~ll~~~~--------------~~~~~~~i  338 (455)
T TIGR00892       280 FLLSIIGFVDIFARPSCGLIAGLKWIR-------PHVQYLFSFALLFNGLTHLLCALA--------------GDYTGLVI  338 (455)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcccccC-------HHHHHHHHHHHHHHHHHHHHHHHh--------------chHHHHHH
Confidence            444555566666667777765431100       011111223333333333332221              13445566


Q ss_pred             HHHHHHHHHHhhhhhhhheeecccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCccccccccchhhHHHHHHH
Q 008231          455 QYFLVGAGEAFVYVGQLEFFIREGPERMKSMSTGLFLSAISMGMFVSSMLVSIVDKITNKHWLRSNLNKGKLNNFYWLLA  534 (573)
Q Consensus       455 ~~~l~g~~~~~~~~~~~~~~~~~~p~~~rg~~~gi~~~~~~lg~~ig~~~~~~i~~~~~~~w~~~~~~~~~~~~~~~~~a  534 (573)
                      ..++.|++.+...+..++.+.+.+|++.+|++.|++++...+|+++++.+.|.+.+..+           ++...|++.+
T Consensus       339 ~~~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g-----------~~~~~f~~~~  407 (455)
T TIGR00892       339 YCIFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATK-----------NYKYIFYASG  407 (455)
T ss_pred             HHHHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhcC-----------CcchHHHHhh
Confidence            77788888888888889999999999999999999999999999999999998765321           1234555555


Q ss_pred             HHHHHHHH
Q 008231          535 VLGLLNFM  542 (573)
Q Consensus       535 ~~~~l~~~  542 (573)
                      ++.+++.+
T Consensus       408 ~~~li~~~  415 (455)
T TIGR00892       408 SIVVSAGL  415 (455)
T ss_pred             HHHHHHHH
Confidence            55555443

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.93  E-value=1.9e-23  Score=219.92  Aligned_cols=173  Identities=16%  Similarity=0.122  Sum_probs=150.9

Q ss_pred             cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHH
Q 008231           28 KTGGWLAAGLILGTELSERICAMGISMNLVTYLVGDLHLSSAKSATIVTNFMGTLNLLGLLGGFLADAKLGRYLTVAIFA  107 (573)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~  107 (573)
                      .+.+|+.+....+..+.+.+..+...... +.+.+++|+|..+.+++.+.+.++..++.++.|+++||+ |||+++.++.
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~-g~r~~~~~~~   84 (405)
T TIGR00891         7 TRAQWNAFSAAWLGWLLDAFDFFLVALVL-AEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRY-GRRLPMVTSI   84 (405)
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHH
Confidence            35677788888888888888877665555 466789999999999999999999999999999999998 9999999999


Q ss_pred             HHHHHHHHHHHhhccCCCCCCCCCccccccccccccchhhHHHHHHHHHHHHHhcCccccccccccccCCCCCCCchHHH
Q 008231          108 SVTALVVGLLTSATSIPSMRPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEK  187 (573)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~~~~~  187 (573)
                      .+.+++.++++++.                          +++.+++.|++.|++.+...+...+++.|++|+++     
T Consensus        85 ~~~~~~~~~~~~~~--------------------------~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~-----  133 (405)
T TIGR00891        85 VLFSAGTLACGFAP--------------------------GYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHL-----  133 (405)
T ss_pred             HHHHHHHHHHHHhc--------------------------cHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhh-----
Confidence            99999988888763                          56788999999999999999999999999999988     


Q ss_pred             hHHHHHHHHHHHHHhhhHHHHHHhhhhhcccc--hhHHHHHHHHHHHHH
Q 008231          188 AMIFFFNRFYFAISIGSLFAVIVLVYVQDNVG--RGWGYGISAGTMVVA  234 (573)
Q Consensus       188 ~r~~~~~~~~~~~~ig~~~~~~~~~~l~~~~g--~~~~f~~~~~~~~~~  234 (573)
                       |+++.++.+.+.++|..+++.+++.+.+..+  |++.|++.++..++.
T Consensus       134 -~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~w~~~f~~~~~~~~~~  181 (405)
T TIGR00891       134 -RNKASGLLISGYAVGAVVAAQVYSLVVPVWGDGWRALFFISILPIIFA  181 (405)
T ss_pred             -hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHH
Confidence             9999999999999999999999999887666  999998765544433

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.93  E-value=2.4e-23  Score=220.08  Aligned_cols=343  Identities=13%  Similarity=0.025  Sum_probs=219.4

Q ss_pred             HHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHhhccCCCC
Q 008231           47 ICAMGISMNLVTYLVGDLHLSSAKSATIVTNFMGTLNLLGLLGGFLADAKLGRYLTVAIFASVTALVVGLLTSATSIPSM  126 (573)
Q Consensus        47 ~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~  126 (573)
                      ++...+.+.++. +.+++|.|..+.++..+.+.+++.++.++.|+++||+ |||+++.++..+.+++..++.++.     
T Consensus        27 ~~~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~-g~r~~l~~~~~~~~~~~~~~~~~~-----   99 (406)
T PRK15402         27 IANDMIQPGMLA-VVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRI-GRRPVMLAGVAFFILTCLAILLAQ-----   99 (406)
T ss_pred             hhhhhHhcchHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CChHHHHHHHHHHHHHHHHHHHHc-----
Confidence            344444444443 5679999999999999999999999999999999998 999999999999999888887753     


Q ss_pred             CCCCCccccccccccccchhhHHHHHHHHHHHHHhcCccccccccccccCCCCCCCchHHHhHHHHHHHHHHHHHhhhHH
Q 008231          127 RPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKAMIFFFNRFYFAISIGSLF  206 (573)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~  206 (573)
                                           +.+.+++.|++.|++.+...+...+.+.|.+|+++      |.++.++.+....+|..+
T Consensus       100 ---------------------~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~------~~~~~~~~~~~~~~~~~~  152 (406)
T PRK15402        100 ---------------------SIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEAD------AIKITALMANVALLAPLL  152 (406)
T ss_pred             ---------------------cHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhH------HHHHHHHHHHHHHHHHHH
Confidence                                 56788899999999999888888899999999887      899999988888899999


Q ss_pred             HHHHhhhhhcccchhHHHHHHHHHHHHHHHHHHhcCccccccCCCCCchhHHHHHHHHHHhccCCCCCCCCCcchhcccc
Q 008231          207 AVIVLVYVQDNVGRGWGYGISAGTMVVAAAILLIGTPWYRFKKPRGSPLTVIWRVLLLAWKKRSHPYPDHPSLLNEYQNA  286 (573)
Q Consensus       207 ~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  286 (573)
                      +|.+++++.+..||+++|++.++..++..+......|+.++.++++.+..+                             
T Consensus       153 g~~i~~~l~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------  203 (406)
T PRK15402        153 GPLVGAALIHVLPWRGMFVLFAALAALSFFGLWRAMPETAGRVGEKLSLKE-----------------------------  203 (406)
T ss_pred             HHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHhCCCCCccccccccHHH-----------------------------
Confidence            999999999888999999887776665555444333322111000000000                             


Q ss_pred             cCCCCCccchhhhhhhhhhhhhhccccCCcccccchhhHHHHHHHHhH-HHHHHHHHHHHHHhhcccchhhhhhhccccc
Q 008231          287 KVPHTEKFKCLDKAAIIEDNAVANENKNNSWIVSTVTEVEEVKMVLKL-LPIWATCILFWTVYSQMTTFTVEQATFMNRK  365 (573)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  365 (573)
                               ..+                      ......+.+..... .................+. +..+..+.+. 
T Consensus       204 ---------~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~~g~~~-  250 (406)
T PRK15402        204 ---------LGR----------------------DYKLVLKNRRFVAGALALGLVSLPLLAWIALSPV-ILISGEQLSS-  250 (406)
T ss_pred             ---------HHH----------------------HHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHhHH-HHHHHhCCCH-
Confidence                     000                      00000011111111 1111111111111111111 1111111111 


Q ss_pred             cccceecccccchhhHHHHHHHHHhhhhhhhhhhcccccccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCc
Q 008231          366 IGSFTVPSGSLSAFLFITILLFTSLNEKVFVPLARKITHSIQGMTSLQRVGTGLIFSVIAMIVSAVIEQQRRETSVQKHI  445 (573)
Q Consensus       366 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~i~~i~~~~~~~~~~~~~~~~~~  445 (573)
                           ...+.......++.++..++.+++.+|..+|           +.+..+.++..++.+.+.....         ..
T Consensus       251 -----~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~~-----------~~~~~~~~~~~~g~~~~~~~~~---------~~  305 (406)
T PRK15402        251 -----YEYGLLQVPVFGALIAGNLTLARLTSRRPLR-----------SLIRMGLWPMVAGLLLAALATV---------IS  305 (406)
T ss_pred             -----HHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH-----------HHHHHHHHHHHHHHHHHHHHHH---------cc
Confidence                 1112222223334445555666665444332           2256666666666666554321         11


Q ss_pred             ccchhHHHHHHHHHHHHHHhhhhhhhheeecccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008231          446 QISAFWLVPQYFLVGAGEAFVYVGQLEFFIREGPERMKSMSTGLFLSAISMGMFVSSMLVSIVDKI  511 (573)
Q Consensus       446 ~~~~~~lv~~~~l~g~~~~~~~~~~~~~~~~~~p~~~rg~~~gi~~~~~~lg~~ig~~~~~~i~~~  511 (573)
                      ....++++...++.+++.+...+..+...... +++.+|+..+++++.+.+++.+|+.+.+.+.+.
T Consensus       306 ~~~~~~~~~~~~~~g~g~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~~  370 (406)
T PRK15402        306 SHAYLWLTAGLSLYAFGIGLANAGLYRLTLFS-SDVSKGTVSAAMGMLSMLIFTVGIELSKHAYLG  370 (406)
T ss_pred             cccHHHHHHHHHHHHHHHHHHhhhHHHHHhhh-ccccccHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence            22455667777888898888777666655443 458899999999999999999999999887653

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.93  E-value=3.1e-23  Score=225.37  Aligned_cols=446  Identities=12%  Similarity=-0.013  Sum_probs=245.9

Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-----cCCCchhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHH
Q 008231           31 GWLAAGLILGTELSERICAMGISMNLVTYLVGD-----LHLSSAKSATIVTNFMGTLNLLGLLGGFLADAKLGRYLTVAI  105 (573)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~-----~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~  105 (573)
                      +++.+.++.++.+.+.++...+....+. +.++     .+.+..+.+++.+.+.++..++.+++|+++||+ |||+++.+
T Consensus        14 ~~~~~~~~~~~~~~~g~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~-Grr~~~~~   91 (502)
T TIGR00887        14 HFRAIVIAGVGFFTDSYDLFCISLVTKM-LGYVYYHGKGPLPSSVSAAVNGSASIGTLAGQLFFGWLADKL-GRKRVYGM   91 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-ccHHHHHH
Confidence            4456666777777777776555544443 3332     345566778999999999999999999999998 99999999


Q ss_pred             HHHHHHHHHHHHHhhccCCCCCCCCCccccccccccccchhhHHHHHHHHHHHHHhcCccccccccccccCCCCCCCchH
Q 008231          106 FASVTALVVGLLTSATSIPSMRPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKE  185 (573)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~~~  185 (573)
                      +.++..++.++++++.+..                    ...+...++++|++.|++.|+..+....+++|++|+++   
T Consensus        92 ~~~~~~v~~~~~~~~~~~~--------------------~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~---  148 (502)
T TIGR00887        92 ELIIMIIATVASGLSPGSS--------------------PKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKW---  148 (502)
T ss_pred             HHHHHHHHHHHHHHccCcc--------------------cchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhh---
Confidence            9999999998888753200                    00236789999999999999999999999999999999   


Q ss_pred             HHhHHHHHHHHHHHHHhhhHHHHHHhhhhhc-----------------------ccchhHHHHHHHHHHHHHHHHHHhcC
Q 008231          186 EKAMIFFFNRFYFAISIGSLFAVIVLVYVQD-----------------------NVGRGWGYGISAGTMVVAAAILLIGT  242 (573)
Q Consensus       186 ~~~r~~~~~~~~~~~~ig~~~~~~~~~~l~~-----------------------~~g~~~~f~~~~~~~~~~~~~~~~~~  242 (573)
                         |+++.++.+....+|..+++.++.++..                       .++||++|.+.++..++..+.. +..
T Consensus       149 ---Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~~~-~~l  224 (502)
T TIGR00887       149 ---RGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALYFR-LTI  224 (502)
T ss_pred             ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHHHHHHHH-HhC
Confidence               9999999999999999999888765431                       2479999987776655544433 334


Q ss_pred             ccccccC-CCCCchhHHHHHHHHHHhccCCCCCCCCCcchhcccccCCCCCccchhhhhhhhhhhhhhccccCCcccccc
Q 008231          243 PWYRFKK-PRGSPLTVIWRVLLLAWKKRSHPYPDHPSLLNEYQNAKVPHTEKFKCLDKAAIIEDNAVANENKNNSWIVST  321 (573)
Q Consensus       243 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (573)
                      ||.++-. .+++..++..+.+....+.   +.++..++....++   + .+                   +...+|+++.
T Consensus       225 pESpr~l~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~~~~---~-~~-------------------~~~~~~~~l~  278 (502)
T TIGR00887       225 PETPRYTADVAKDVEQAASDMSAVLQV---KIEAEPDEVEKAST---A-VE-------------------VPKASWSDFF  278 (502)
T ss_pred             CCCHHHHHHhCcchHHHHHHHHHHhcc---ccccCcccccchhc---c-cc-------------------chhhhHHHHH
Confidence            5433210 0111111111111111110   00000000000000   0 00                   0001121111


Q ss_pred             hhh--HHHHHHHHhHHHHHH-HHHHHHHHhhcccchhhhhhhccccccccce-ec----cc-ccchhhHHHHHHHHHhhh
Q 008231          322 VTE--VEEVKMVLKLLPIWA-TCILFWTVYSQMTTFTVEQATFMNRKIGSFT-VP----SG-SLSAFLFITILLFTSLNE  392 (573)
Q Consensus       322 ~~~--~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~----~~-~~~~~~~~~~l~~~~~~~  392 (573)
                      ...  ....+..+.....++ ..+.++....+.++++..  .+++....+.. ..    .. ....+..++.++...+..
T Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~p~i~~~--~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~  356 (502)
T TIGR00887       279 THFFKWRHGKHLLGTAGSWFLLDIAFYGVNLNQKVILSA--IGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTV  356 (502)
T ss_pred             HHHhhhHHHHHHHHHHHHHHHHHHHHHccccccHHHHHH--HcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            000  001111111111111 112222222222222211  11111100000 00    00 011122233333445556


Q ss_pred             hhhhhhhcccccccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCcccchhHHHHHHHHHHHHHHhhhhhhhh
Q 008231          393 KVFVPLARKITHSIQGMTSLQRVGTGLIFSVIAMIVSAVIEQQRRETSVQKHIQISAFWLVPQYFLVGAGEAFVYVGQLE  472 (573)
Q Consensus       393 ~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~lv~~~~l~g~~~~~~~~~~~~  472 (573)
                      ++.||+.||..           +..+.++.+++++++......        . .... .++...+...++.....+..+.
T Consensus       357 ~l~dr~gRR~~-----------l~~~~~~~~~~~~~l~~~~~~--------~-~~~~-~~~~~~~~~~~~~~~~~~~~~~  415 (502)
T TIGR00887       357 FLVDIIGRKPI-----------QLMGFFILTVLFFVLGFAYNH--------L-STHG-FLAIYVLAQFFANFGPNATTFI  415 (502)
T ss_pred             HHhhhhcchhH-----------HHHHHHHHHHHHHHHHHHHHh--------c-chhH-HHHHHHHHHHHHhcCCCchhhh
Confidence            77777666532           445555555555544433110        0 0011 1111111112222234567778


Q ss_pred             eeecccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCccccccccchhhHHHHHHHHHHHHHHHHHHHHHhhcc
Q 008231          473 FFIREGPERMKSMSTGLFLSAISMGMFVSSMLVSIVDKITNKHWLRSNLNKGKLNNFYWLLAVLGLLNFMVFLFFAMKHQ  552 (573)
Q Consensus       473 ~~~~~~p~~~rg~~~gi~~~~~~lg~~ig~~~~~~i~~~~~~~w~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~  552 (573)
                      +..|.+|++.|+++.|+.+..+.+++++++.+.+++.+..+..|  +.....+....|++++++++++.+++ ++.||++
T Consensus       416 ~~~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~i~~-~~lpEt~  492 (502)
T TIGR00887       416 VPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTK--GYPTGIWMGHVLEIFALFMFLGILFT-LLIPETK  492 (502)
T ss_pred             hhhccCchhHHHHHHHHHHHHhhhHHHHHHHHhhhhhccccccc--cccccccchHHHHHHHHHHHHHHHHh-eEeccCC
Confidence            88999999999999999999999999999999998876321000  00000122346777777777766544 4557877


Q ss_pred             hhhhc
Q 008231          553 YNVQH  557 (573)
Q Consensus       553 ~~~~~  557 (573)
                      +++.+
T Consensus       493 ~~~le  497 (502)
T TIGR00887       493 GKSLE  497 (502)
T ss_pred             CCCHH
Confidence            76543

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.93  E-value=8.5e-24  Score=228.69  Aligned_cols=398  Identities=12%  Similarity=0.086  Sum_probs=247.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHH
Q 008231           34 AAGLILGTELSERICAMGISMNLVTYLVGDLHLSSAKSATIVTNFMGTLNLLGLLGGFLADAKLGRYLTVAIFASVTALV  113 (573)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~  113 (573)
                      .+..++++.+...++..... ...+++.+++|.+..+.+++.+.+.++..++.++.|+++||+ |||+++.++..+.+++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~-~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~   80 (485)
T TIGR00711         3 LTIVLMLGTFMAVLDSTIVN-VAIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRF-GTRRLFLISTFAFTLG   80 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHh-CcHHHHHHHHHHHHHH
Confidence            44556666677767665444 445566789999999999999999999999999999999998 9999999999999999


Q ss_pred             HHHHHhhccCCCCCCCCCccccccccccccchhhHHHHHHHHHHHHHhcCccccccccccccCCCCCCCchHHHhHHHHH
Q 008231          114 VGLLTSATSIPSMRPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKAMIFFF  193 (573)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  193 (573)
                      .++++++.                          +...++++|+++|++.+...+...+++.|++|+++      |++++
T Consensus        81 ~~~~~~~~--------------------------~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~------r~~~~  128 (485)
T TIGR00711        81 SLLCGVAP--------------------------NLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEK------RGRAM  128 (485)
T ss_pred             HHHHhCcC--------------------------CHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHH------HHHHH
Confidence            99988763                          56789999999999999999999999999999887      99999


Q ss_pred             HHHHHHHHhhhHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHHHHhcCccccccCCCC-CchhHHHH-----HHHHHHh
Q 008231          194 NRFYFAISIGSLFAVIVLVYVQDNVGRGWGYGISAGTMVVAAAILLIGTPWYRFKKPRG-SPLTVIWR-----VLLLAWK  267 (573)
Q Consensus       194 ~~~~~~~~ig~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-----~~~~~~~  267 (573)
                      ++++....+|..+||.+++++.+.+||++.|++.+...++..+...+..++.++++.++ +.......     .......
T Consensus       129 ~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~l~~~~~~~~~~~~~  208 (485)
T TIGR00711       129 AIWGLTVLVAPALGPTLGGWIIENYHWRWIFLINVPIGIIVVVVAFFILPRDKPAASENFDFLGLLLLSVGLGSLLYGLS  208 (485)
T ss_pred             HHHHHHHHHHhhhhhccHhHhccCcCceehhhhhhHHHHHHHHHHHHHcCCccccccCCCcHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999877666555554444444322211111 11110000     0000000


Q ss_pred             ccCCCCCCCCCcchhcccccCCCCCccchh---hhhhhhhhhhhhccccCCcccccchhhHHHHHHHHhHHHHHHHHHHH
Q 008231          268 KRSHPYPDHPSLLNEYQNAKVPHTEKFKCL---DKAAIIEDNAVANENKNNSWIVSTVTEVEEVKMVLKLLPIWATCILF  344 (573)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  344 (573)
                      +. .+..    +.        +. ......   ...........+ .+...|..  .....++++.....+..++....+
T Consensus       209 ~~-~~~~----~~--------~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~  271 (485)
T TIGR00711       209 EG-PERG----WF--------DS-NEILILSITGLVAIIAFVVWE-LTDDNPLV--DLRLFKYRNFTIGCVYMSLLGLGL  271 (485)
T ss_pred             hC-CCCC----CC--------Cc-hHHHHHHHHHHHHHHHHHHHH-HcCCCCcc--CHHHHcCCChHHHHHHHHHHHHHH
Confidence            00 0000    00        00 000000   000000000000 00111111  001111111111122222222222


Q ss_pred             HHHhhcccchhhhhhhccccccccceecccccchhhHHHHHHHHHhhhhhhhhhhcccccccCCCchHHHHHHHHHHHHH
Q 008231          345 WTVYSQMTTFTVEQATFMNRKIGSFTVPSGSLSAFLFITILLFTSLNEKVFVPLARKITHSIQGMTSLQRVGTGLIFSVI  424 (573)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~i  424 (573)
                      +......+.++. ...+.+      ....+.......++.++..++.+++.+|..+|           +.+..+.++.++
T Consensus       272 ~~~~~~~p~~~~-~~~g~s------~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~-----------~~~~~g~~~~~~  333 (485)
T TIGR00711       272 YGSFYLLPLYLQ-QVLGYT------ALQAGLHILPVGLAPMLSSPIAGRMGDKIDPR-----------KLVTIGLILYAV  333 (485)
T ss_pred             HHHHHHHHHHHH-HhcCCC------HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcH-----------HHHHHHHHHHHH
Confidence            222222221211 111111      11234445556666777777888776555443           225666666666


Q ss_pred             HHHHHHHHHHHHHhhcccCCcccchhHHHHHHHHHHHHHHhhhhhhhheeecccCchhHHHHHHHHHHHHHHHHHHHHHH
Q 008231          425 AMIVSAVIEQQRRETSVQKHIQISAFWLVPQYFLVGAGEAFVYVGQLEFFIREGPERMKSMSTGLFLSAISMGMFVSSML  504 (573)
Q Consensus       425 ~~i~~~~~~~~~~~~~~~~~~~~~~~~lv~~~~l~g~~~~~~~~~~~~~~~~~~p~~~rg~~~gi~~~~~~lg~~ig~~~  504 (573)
                      +..++...          .....+.+..+...++.|++.+...+.......+..|++.+|++.|+.++.+.+|+.+|+.+
T Consensus       334 ~~~~~~~~----------~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i  403 (485)
T TIGR00711       334 GFYWRAFT----------FTPDTPFLAIALPQFIRGFGMGCFFMPLTTIALSGLPPHKIARGSSLSNFTRQLGGSIGTAL  403 (485)
T ss_pred             HHHHHhcc----------CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence            66655421          11122444555567888999888887777778888999999999999999999999999999


Q ss_pred             HHHHhh
Q 008231          505 VSIVDK  510 (573)
Q Consensus       505 ~~~i~~  510 (573)
                      .+.+.+
T Consensus       404 ~g~~~~  409 (485)
T TIGR00711       404 ITTILT  409 (485)
T ss_pred             HHHHHH
Confidence            998875

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.93  E-value=2.6e-24  Score=231.69  Aligned_cols=159  Identities=12%  Similarity=-0.011  Sum_probs=130.6

Q ss_pred             HHHHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCcc
Q 008231           54 MNLVTYLVGDLHLSSAKSATIVTNFMGTLNLLGLLGGFLADAKLGRYLTVAIFASVTALVVGLLTSATSIPSMRPPQCDD  133 (573)
Q Consensus        54 ~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (573)
                      +...+.+.+++|+|..+.|++.+.+.+++.++++++|+++||+ |||+++.+++++.+++.++.++....          
T Consensus        49 ~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~-g~r~~l~~~~~~~~~~~~~~~~~~~~----------  117 (467)
T PRK09556         49 KAAQNDMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADGK-NTKQFLPFLLILSAICMLGFGASLGS----------  117 (467)
T ss_pred             hhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhcc-CccchHHHHHHHHHHHHHHHHHHHhc----------
Confidence            3445567889999999999999999999999999999999999 99999999888888777666652100          


Q ss_pred             ccccccccccchhhHHHHHHHHHHHHHhcCccccccccccccCCCCCCCchHHHhHHHHHHHHHHHHHhhhHHHHHHhhh
Q 008231          134 YRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKAMIFFFNRFYFAISIGSLFAVIVLVY  213 (573)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~~~~~  213 (573)
                                 ...+.+.+++.|++.|++.+...|...++++|++|+++      |+++++++..+.++|..+++.+..+
T Consensus       118 -----------~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~------rg~a~gi~~~~~~lG~~l~~~i~~~  180 (467)
T PRK09556        118 -----------GSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRK------RGRFLGFWNISHNLGGAGAGGVALW  180 (467)
T ss_pred             -----------ccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccc------eeeeEEeeecccchhhhHHHHHHHH
Confidence                       00368899999999999999999999999999999998      9999999999999999999998877


Q ss_pred             hhccc---chhHHHHHHHHHHHHHHHHHHh
Q 008231          214 VQDNV---GRGWGYGISAGTMVVAAAILLI  240 (573)
Q Consensus       214 l~~~~---g~~~~f~~~~~~~~~~~~~~~~  240 (573)
                      +.+..   +|+..|.+.++..++..+..++
T Consensus       181 ~~~~~~~~~~~~~f~~~g~~~~~~~i~~~~  210 (467)
T PRK09556        181 GANYFFDGHVIGMFIFPSIIALIIGFIGLR  210 (467)
T ss_pred             HHHhhccCcchhHHHHHHHHHHHHHHHHHH
Confidence            76543   5888888766655444333333

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.93  E-value=2.2e-23  Score=223.60  Aligned_cols=160  Identities=10%  Similarity=0.008  Sum_probs=127.5

Q ss_pred             HHHHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCcc
Q 008231           54 MNLVTYLVGDLHLSSAKSATIVTNFMGTLNLLGLLGGFLADAKLGRYLTVAIFASVTALVVGLLTSATSIPSMRPPQCDD  133 (573)
Q Consensus        54 ~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (573)
                      ++..+|+.++ |+|..+.+++.+.+.++..++++++|+++||+ |||+++.++..+.+++.++++++....         
T Consensus        49 ~~~~p~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~-g~k~~l~~~~~~~~i~~~~~~~~~~~~---------  117 (452)
T PRK11273         49 ALAMPYLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILAAAVMLFMGFVPWAT---------  117 (452)
T ss_pred             HHhhHHHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhcc-CCchhHHHHHHHHHHHHHHHHhhhccc---------
Confidence            3455678877 99999999999999999999999999999999 999999999999999888887752111         


Q ss_pred             ccccccccccchhhHHHHHHHHHHHHHhcCccccccccccccCCCCCCCchHHHhHHHHHHHHHHHHHhhhH-HHHHHhh
Q 008231          134 YRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKAMIFFFNRFYFAISIGSL-FAVIVLV  212 (573)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~-~~~~~~~  212 (573)
                                   .+.+.+++.|++.|++.+...+.....+.|++|+++      |++++++++.+.++|+. .+|+++.
T Consensus       118 -------------~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~l~~~  178 (452)
T PRK11273        118 -------------SSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKE------RGGIVSVWNCAHNVGGGLPPLLFLL  178 (452)
T ss_pred             -------------ccHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHH------HHHHHHHHHHHHHhhhhHHHHHHHH
Confidence                         256678889999999999988888888999999888      99999999999999874 4555443


Q ss_pred             hhhcccchhHHHHHHHHHHHHHHHHHHhcCc
Q 008231          213 YVQDNVGRGWGYGISAGTMVVAAAILLIGTP  243 (573)
Q Consensus       213 ~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~  243 (573)
                      .+....|||+.|++.++..++..++..+..+
T Consensus       179 ~~~~~~gw~~~f~i~~~~~~~~~~l~~~~~~  209 (452)
T PRK11273        179 GMAWFNDWHAALYMPAFAAILVALFAFAMMR  209 (452)
T ss_pred             HHHHhccHHHHHHHHHHHHHHHHHHHHHHcc
Confidence            3433458999999877665554443333333

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.93  E-value=2e-23  Score=225.17  Aligned_cols=175  Identities=12%  Similarity=-0.002  Sum_probs=134.7

Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHH
Q 008231           31 GWLAAGLILGTELSERICAMGISMNLVTYLVGDLHLSSAKSATIVTNFMGTLNLLGLLGGFLADAKLGRYLTVAIFASVT  110 (573)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~  110 (573)
                      +++.+.......++..+..+.+.+.+ +++.+++|+|..+.+++.+.+.+++.++.+++|+++||+ |||+++..+.++.
T Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-G~r~~~~~~~~~~  111 (476)
T PLN00028         34 HMRAFHLSWISFFTCFVSTFAAAPLL-PIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLY-GPRYGSAFLLMLT  111 (476)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CChHHHHHHHHHH
Confidence            33444455555555555555554443 467889999999999999999999999999999999998 9999999999999


Q ss_pred             HHHHHHHHhhccCCCCCCCCCccccccccccccchhhHHHHHHHHHHHHHhcCccccccccccccCCCCCCCchHHHhHH
Q 008231          111 ALVVGLLTSATSIPSMRPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKAMI  190 (573)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~  190 (573)
                      +++.++++++.                          +...+++.|++.|++.+...+ ...+++|++|+++      |+
T Consensus       112 ~~~~~~~~~~~--------------------------s~~~l~~~r~l~G~~~~~~~~-~~~~i~~~~~~~~------rg  158 (476)
T PLN00028        112 APAVFCMSLVS--------------------------SATGFIAVRFFIGFSLATFVS-CQYWMSTMFNGKI------VG  158 (476)
T ss_pred             HHHHHHHHHhc--------------------------CHHHHHHHHHHHHHHHHhhHH-HHHHHHHhcChhh------ee
Confidence            99888888763                          456788899999998887543 4567899999988      99


Q ss_pred             HHHHHHHHHHHhhhHHHHHHhhhhhc---------ccchhHHHHHHHHHHHHHHHHHHh
Q 008231          191 FFFNRFYFAISIGSLFAVIVLVYVQD---------NVGRGWGYGISAGTMVVAAAILLI  240 (573)
Q Consensus       191 ~~~~~~~~~~~ig~~~~~~~~~~l~~---------~~g~~~~f~~~~~~~~~~~~~~~~  240 (573)
                      +++++.+...++|..+++.+.+.+..         ..|||++|++.++..++..+..++
T Consensus       159 ~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~i~g~l~l~~~l~~~~  217 (476)
T PLN00028        159 TANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFFVPGLLHIIMGILVLT  217 (476)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHH
Confidence            99999988788888877766654422         258999999887766555444433

>PRK03699 putative transporter; Provisional

Probab=99.93  E-value=6.2e-23  Score=216.13  Aligned_cols=376  Identities=10%  Similarity=0.054  Sum_probs=238.6

Q ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHH
Q 008231           30 GGWLAAGLILGTELSERICAMGISMNLVTYLVGDLHLSSAKSATIVTNFMGTLNLLGLLGGFLADAKLGRYLTVAIFASV  109 (573)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~  109 (573)
                      .++|..+...+..++.....+.....+| .+.+++|+|..+.+++.+.+.++..++.+++|+++||+ |||+++..+..+
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~-g~r~~~~~~~~~   81 (394)
T PRK03699          4 NRIKLTWISFLSYALTGALVIVTGMVMG-PIAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEII-PLKRQLIFGFAL   81 (394)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhhhH-HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHH
Confidence            4556777777777777776655555454 46779999999999999999999999999999999998 999999999999


Q ss_pred             HHHHHHHHHhhccCCCCCCCCCccccccccccccchhhHHHHHHHHHHHHHhcCccccccccccccCCCCCCCchHHHhH
Q 008231          110 TALVVGLLTSATSIPSMRPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKAM  189 (573)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~r  189 (573)
                      .+++.++++++.                          +.+.+++.|+++|++.+...+...+++.|.+|+++      |
T Consensus        82 ~~i~~~l~~~~~--------------------------~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~------r  129 (394)
T PRK03699         82 MILAVAGLMFSH--------------------------SLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQ------R  129 (394)
T ss_pred             HHHHHHHHHHcc--------------------------hHHHHHHHHHHHHHhhHhhccchhHHhhhhcccch------H
Confidence            999988888752                          67788999999999999988888999999998887      9


Q ss_pred             HHHHHHHHHHHHhhhHHHHHHhhhhhc-ccchhHHHHHHHHHHHHHHHHHHhcCccccccCCCCCchhHHHHHHHHHHhc
Q 008231          190 IFFFNRFYFAISIGSLFAVIVLVYVQD-NVGRGWGYGISAGTMVVAAAILLIGTPWYRFKKPRGSPLTVIWRVLLLAWKK  268 (573)
Q Consensus       190 ~~~~~~~~~~~~ig~~~~~~~~~~l~~-~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (573)
                      +++.+..+...++|+.++|.+.+++.. ..|||++|.+.++..++..+..+....  ++ ++++++              
T Consensus       130 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~gw~~~f~~~~~~~~~~~~~~~~~~~--p~-~~~~~~--------------  192 (394)
T PRK03699        130 GSRLLFTDSFFSMAGMIFPIIAAYLLARSIEWYWVYACIGLVYVAIFILTLFSEF--PA-LGKHAP--------------  192 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHhcCC--cc-ccccCc--------------
Confidence            999999888899999999999888754 579999998777655544433332111  10 000000              


Q ss_pred             cCCCCCCCCCcchhcccccCCCCCccchhhhhhhhhhhhhhccccCCcccccchhhHHHHHHHHhHHHHHHHHHHHHHHh
Q 008231          269 RSHPYPDHPSLLNEYQNAKVPHTEKFKCLDKAAIIEDNAVANENKNNSWIVSTVTEVEEVKMVLKLLPIWATCILFWTVY  348 (573)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  348 (573)
                          .++              ..                    ....+|         +.+.....+..++.....+...
T Consensus       193 ----~~~--------------~~--------------------~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~  225 (394)
T PRK03699        193 ----KAD--------------KP--------------------VAKEKW---------GIGVLFLAIAALLYILAQLTFI  225 (394)
T ss_pred             ----ccc--------------Cc--------------------cccccC---------ChHHHHHHHHHHHHHHHHHHHH
Confidence                000              00                    000011         0111111111222222222333


Q ss_pred             hcccchhhhhhhccccccccceecccccchhhHHHHHHHHHhhhhhhhhhhcccccccCCCchHHHHHHHHHHHHHHHHH
Q 008231          349 SQMTTFTVEQATFMNRKIGSFTVPSGSLSAFLFITILLFTSLNEKVFVPLARKITHSIQGMTSLQRVGTGLIFSVIAMIV  428 (573)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~i~~i~  428 (573)
                      .+.+.+.... .+++..      ..+.+.+...++..+...+.+++.||+.+|+           .+..+..+..+.+++
T Consensus       226 ~~~p~~l~~~-~g~s~~------~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~-----------~l~~~~~~~~~~~~~  287 (394)
T PRK03699        226 SWVPEYAQKK-FGMSLE------DAGNLVSNFWMAYMVGMWIFSFIVRFFDLQR-----------ILTVLAGLALVLMYL  287 (394)
T ss_pred             HHHHHHHHHH-cCCChH------HhhHHHHHHHHHHHHHHHHHHHHHHHhchhh-----------HHHHHHHHHHHHHHH
Confidence            3333333221 122211      2333444445555666666777765554432           133333333333333


Q ss_pred             HHHHHHHHHhhcccCCcccchhHHHHHHHHHHHHHHhhhhhhhheeecccCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008231          429 SAVIEQQRRETSVQKHIQISAFWLVPQYFLVGAGEAFVYVGQLEFFIREGPERMKSMSTGLFLSAISMGMFVSSMLVSIV  508 (573)
Q Consensus       429 ~~~~~~~~~~~~~~~~~~~~~~~lv~~~~l~g~~~~~~~~~~~~~~~~~~p~~~rg~~~gi~~~~~~lg~~ig~~~~~~i  508 (573)
                      +...              .+.+++....++.|++.+...+...++..+..|++ ++...+.......+|..++|.+.|++
T Consensus       288 ~~~~--------------~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~g~~i~p~~~G~l  352 (394)
T PRK03699        288 FVNT--------------DDPSHLLYAILGLGFFSSAIYTTIITLGSQQTKVA-SPKLVNFILTCGTIGTMLTFVVTSPI  352 (394)
T ss_pred             HHHc--------------CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC-CHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            3221              12233444556667766666677777777777644 56778888888899999999999999


Q ss_pred             hhhhccCccccccccchhhHHHHHHHHHHHHHHHHHHHHH
Q 008231          509 DKITNKHWLRSNLNKGKLNNFYWLLAVLGLLNFMVFLFFA  548 (573)
Q Consensus       509 ~~~~~~~w~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~  548 (573)
                      .+..+            ....+++.+++.+++.+...+..
T Consensus       353 ~~~~g------------~~~~~~~~~~~~~~~~~~~~~~~  380 (394)
T PRK03699        353 VAHFG------------LQAALLTANGLYAVVFVMCILLG  380 (394)
T ss_pred             HHHhC------------chhhhhhhHHHHHHHHHHHHHHH
Confidence            86432            23456666666666655444433

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.93  E-value=3.5e-23  Score=215.94  Aligned_cols=365  Identities=12%  Similarity=0.047  Sum_probs=226.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHH-HHHHHHHHHHHH
Q 008231           39 LGTELSERICAMGISMNLVTYLVGDLHLSSAKSATIVTNFMGTLNLLGLLGGFLADAKLGRYLTVAI-FASVTALVVGLL  117 (573)
Q Consensus        39 ~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~-~~~~~~~~~~~~  117 (573)
                      ++..++..++.....+.++.|+++++|.|..+.+++.+.+.+...+..++.|+++||+ ||||.++. +..+..++..++
T Consensus         3 ~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~-g~r~~~~~~~~~~~~~~~~~~   81 (375)
T TIGR00899         3 LLVAFLTGIAGALQFPTLSLFLSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQ-GDRKGLILFCCLLAALACLLF   81 (375)
T ss_pred             hHHHHHHHHHHHHHhhHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHHHHH
Confidence            3456777778888889999999999999999999999999999999999999999998 99887654 555555666677


Q ss_pred             HhhccCCCCCCCCCccccccccccccchhhHHHHHHHHHHHHHhcCccccccccccccCCCCCCCchHHHhHHHH--HHH
Q 008231          118 TSATSIPSMRPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKAMIFF--FNR  195 (573)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~--~~~  195 (573)
                      +++.                          +++.+++.|++.|.+.+...|...++..|..|++.      |.++  .+.
T Consensus        82 ~~~~--------------------------~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~------~~~~~~~~~  129 (375)
T TIGR00899        82 AWNR--------------------------NYFLLLVLGVLLSSFASTANPQLFALAREHADRTG------REAVMFSSV  129 (375)
T ss_pred             Hhcc--------------------------hHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcc------hhhHHHHHH
Confidence            6652                          56678888888888877777887788888777655      5543  677


Q ss_pred             HHHHHHhhhHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHHHHhcCccccccCCCCCchhHHHHHHHHHHhccCCCCCC
Q 008231          196 FYFAISIGSLFAVIVLVYVQDNVGRGWGYGISAGTMVVAAAILLIGTPWYRFKKPRGSPLTVIWRVLLLAWKKRSHPYPD  275 (573)
Q Consensus       196 ~~~~~~ig~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (573)
                      .+.+.++|..+||.+++++.+..|||++|++.++..++..+..++..|+.++.+++++.                     
T Consensus       130 ~~~~~~~g~~ig~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------  188 (375)
T TIGR00899       130 MRAQISLAWVIGPPLAFWLALGFGFTVMFLTAALAFVLCGVLVWLFLPSYPRGAPGALT---------------------  188 (375)
T ss_pred             HHHHHhHHHHHhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhCCCcccCcccccC---------------------
Confidence            88888999999999999999989999999988776665555444434432211100000                     


Q ss_pred             CCCcchhcccccCCCCCccchhhhhhhhhhhhhhccccCCcccccchhhHHHHHHHHhHHHHHHHHHHHHHHhhcccchh
Q 008231          276 HPSLLNEYQNAKVPHTEKFKCLDKAAIIEDNAVANENKNNSWIVSTVTEVEEVKMVLKLLPIWATCILFWTVYSQMTTFT  355 (573)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  355 (573)
                                       +.+..                 ..+   ++   ++.+....  ..+.............+.++
T Consensus       189 -----------------~~~~~-----------------~~~---~~---~~~~~~~~--~~~~~~~~~~~~~~~~~~~~  226 (375)
T TIGR00899       189 -----------------RLEVR-----------------GLL---AS---RDTRLLFV--ACTLMWGCNILYIINMPLLI  226 (375)
T ss_pred             -----------------cchhh-----------------hhh---cC---cchHHHHH--HHHHHHHHHHHHHhhhHHHH
Confidence                             00000                 000   00   00111111  11111111111111122221


Q ss_pred             hhhhhccccccccceecccccchhhHHHHHHHHHhhhhhhhhhhcccccccCCCchHHHHHHHHHHHHHHHHHHHHHHHH
Q 008231          356 VEQATFMNRKIGSFTVPSGSLSAFLFITILLFTSLNEKVFVPLARKITHSIQGMTSLQRVGTGLIFSVIAMIVSAVIEQQ  435 (573)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~i~~i~~~~~~~~  435 (573)
                       ....+.+..      ..+.+........+....+.+++.||..+|+           .+..+.++..+.++.....   
T Consensus       227 -~~~~g~~~~------~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~-----------~~~~~~~~~~~~~~~~~~~---  285 (375)
T TIGR00899       227 -IHELGLPDK------LAGLMMGTAAGLEIPFMLLAGYLIKRFGKRR-----------LMLLAALAGVAFYTGLAAD---  285 (375)
T ss_pred             -HHHcCCCHH------HHHHHHHHHHHHHHHHHHhHHHHHHHhcchh-----------HHHHHHHHHHHHHHHHHHH---
Confidence             111111111      1222333333334444556666665544332           1333444433333332221   


Q ss_pred             HHhhcccCCcccchhHHHHHHHHHHHHHHhhhhhhhheeecccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccC
Q 008231          436 RRETSVQKHIQISAFWLVPQYFLVGAGEAFVYVGQLEFFIREGPERMKSMSTGLFLSAISMGMFVSSMLVSIVDKITNKH  515 (573)
Q Consensus       436 ~~~~~~~~~~~~~~~~lv~~~~l~g~~~~~~~~~~~~~~~~~~p~~~rg~~~gi~~~~~~lg~~ig~~~~~~i~~~~~~~  515 (573)
                                 .+.+.++...++.+++.+...+....+..|..|++ +++++++++...++|..+++.+.|.+.+..   
T Consensus       286 -----------~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~---  350 (375)
T TIGR00899       286 -----------NSLWALLMLQLLNAIFIGILAGIGMLYFQDLMPGR-AGAATTLYTNTGRVGWIIAGSVGGILAERW---  350 (375)
T ss_pred             -----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcch-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhc---
Confidence                       12334445556777777777788888888888865 679999999999999999999999887642   


Q ss_pred             ccccccccchhhHHHHHHHHHHHHHHHHH
Q 008231          516 WLRSNLNKGKLNNFYWLLAVLGLLNFMVF  544 (573)
Q Consensus       516 w~~~~~~~~~~~~~~~~~a~~~~l~~~~~  544 (573)
                               ++...|++.+++.+++.++.
T Consensus       351 ---------g~~~~~~~~~~~~~~~~~~~  370 (375)
T TIGR00899       351 ---------SYHAVYWFAIVMLIVALFCL  370 (375)
T ss_pred             ---------cchhHHHHHHHHHHHHHHHH
Confidence                     12345666666666655544

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.93  E-value=9.2e-24  Score=219.67  Aligned_cols=336  Identities=11%  Similarity=-0.035  Sum_probs=218.2

Q ss_pred             HHHHHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCc
Q 008231           53 SMNLVTYLVGDLHLSSAKSATIVTNFMGTLNLLGLLGGFLADAKLGRYLTVAIFASVTALVVGLLTSATSIPSMRPPQCD  132 (573)
Q Consensus        53 ~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (573)
                      .+.+.+++.+++|+|..+.+++.+.+.++..++.++.|+++||+ |||+++.++..+.+++.++++++            
T Consensus        22 ~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~-G~r~~~~~~~~~~~~~~~~~~~~------------   88 (377)
T TIGR00890        22 WTLLAPPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKF-GPRAVAMLGGILYGLGFTFYAIA------------   88 (377)
T ss_pred             hhhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHc-CccchhHHhHHHHHHHHHHHHHH------------
Confidence            34566788899999999999999999999999999999999998 99999999999999999988886            


Q ss_pred             cccccccccccchhhHHHHHHHHHHHHHhcCccccccccccccCCCCCCCchHHHhHHHHHHHHHHHHHhhhHHHHHHhh
Q 008231          133 DYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKAMIFFFNRFYFAISIGSLFAVIVLV  212 (573)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~~~~  212 (573)
                                    .+.+.++++|++.|++.+...+.....+.+++| ++      |+++.++...+.++|..+++.+.+
T Consensus        89 --------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~------~~~~~~~~~~~~~~g~~~~~~~~~  147 (377)
T TIGR00890        89 --------------DSLAALYLTYGLASAGVGIAYGIALNTAVKWFP-DK------RGLASGIIIGGYGLGSFILSPLIT  147 (377)
T ss_pred             --------------HHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHcC-cc------cHHHHHHHHHhcchhHhHHHHHHH
Confidence                          377889999999999999887777778888876 45      999999999999999988777777


Q ss_pred             hhhcccchhHHHHHHHHHHHHHHHHHHhcCccccccCCCCCchhHHHHHHHHHHhccCCCCCCCCCcchhcccccCCCCC
Q 008231          213 YVQDNVGRGWGYGISAGTMVVAAAILLIGTPWYRFKKPRGSPLTVIWRVLLLAWKKRSHPYPDHPSLLNEYQNAKVPHTE  292 (573)
Q Consensus       213 ~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (573)
                      .+.+..|||+.|++.++..++..+..++..++.++++++++                    .+.             ..+
T Consensus       148 ~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~-------------~~~  194 (377)
T TIGR00890       148 SVINLEGVPAAFIYMGIIFLLVIVLGAFLIGYPPGQLIKTN--------------------IEV-------------SVK  194 (377)
T ss_pred             HHHhcccHHHHHHHHHHHHHHHHHHHHHheecCchhccccC--------------------ccc-------------chh
Confidence            77778899999998877666554443333322111000000                    000             000


Q ss_pred             ccchhhhhhhhhhhhhhccccCCcccccchhhHHHHHHHHhHHHHHHHHHHHHHHhhcccchhhhhhhccccccccceec
Q 008231          293 KFKCLDKAAIIEDNAVANENKNNSWIVSTVTEVEEVKMVLKLLPIWATCILFWTVYSQMTTFTVEQATFMNRKIGSFTVP  372 (573)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  372 (573)
                      +.+                         ..+..++++........+........... ....+. +..+.+      ...
T Consensus       195 ~~~-------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~------~~~  241 (377)
T TIGR00890       195 DYT-------------------------VWEMLRTPQFWVLYLSFFLNAVSGLLLIG-LYKPYG-QSLGLS------DGF  241 (377)
T ss_pred             hhh-------------------------HHHHHcCccHHHHHHHHHHHhHHHHHHHH-HHHHHH-HHcCCC------HHH
Confidence            000                         00000011111111111111111111111 111111 111111      111


Q ss_pred             ccccchhhHHHHHHHHHhhhhhhhhhhcccccccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCcccchhHH
Q 008231          373 SGSLSAFLFITILLFTSLNEKVFVPLARKITHSIQGMTSLQRVGTGLIFSVIAMIVSAVIEQQRRETSVQKHIQISAFWL  452 (573)
Q Consensus       373 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~l  452 (573)
                      .+.+.....+..++..+..+++.||+.||..           +..+.++.+++++.+....            .......
T Consensus       242 ~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~-----------~~~~~~~~~~~~~~~~~~~------------~~~~~~~  298 (377)
T TIGR00890       242 LVLAVSISSIFNGGGRPFLGALSDKIGRQKT-----------MSIVFGISAVGMAAMLFIP------------MLNDVLF  298 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-----------hhHHHHHHHHHHHHHHHcc------------cchhHHH
Confidence            2344555566666777777888776655422           4556666666665544331            1112222


Q ss_pred             HHHHHHHHHHHHhhhhhhhheeecccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008231          453 VPQYFLVGAGEAFVYVGQLEFFIREGPERMKSMSTGLFLSAISMGMFVSSMLVSIVDKI  511 (573)
Q Consensus       453 v~~~~l~g~~~~~~~~~~~~~~~~~~p~~~rg~~~gi~~~~~~lg~~ig~~~~~~i~~~  511 (573)
                      ....++.+++.+...+...+++.|..|++.||++.|+.+....+|+.+++.+.+.+.+.
T Consensus       299 ~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~  357 (377)
T TIGR00890       299 LATVALVFFTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTE  357 (377)
T ss_pred             HHHHHHHHHHhccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            33345556666655666677888999999999999999999999999999999988754

>TIGR00897 2A0118 polyol permease family

Probab=99.93  E-value=1.3e-22  Score=214.19  Aligned_cols=390  Identities=14%  Similarity=0.016  Sum_probs=239.6

Q ss_pred             cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHH
Q 008231           28 KTGGWLAAGLILGTELSERICAMGISMNLVTYLVGDLHLSSAKSATIVTNFMGTLNLLGLLGGFLADAKLGRYLTVAIFA  107 (573)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~  107 (573)
                      +.+.+|++....++.++...+.+...+++++++ +++|++..+.+++.+.+.++..++.++.|+++||+ ||||++..+.
T Consensus         8 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~-g~k~~l~~~~   85 (402)
T TIGR00897         8 KIGIPLNLLWGYIGVVVFMTGDGLEQGWLSPFL-KALGLSPQQSASAFTLYGIAAAISAWISGVVAEII-GPLKTMMIGL   85 (402)
T ss_pred             HcCCCchhhHHHHHHHHHHHhhhhHHHhHHHHH-HHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHc-CcHHHHHHHH
Confidence            456677888888888888888877888888888 57899999999999999999999999999999998 9999999999


Q ss_pred             HHHHHHHHHHHhhccCCCCCCCCCccccccccccccchhhHHHHHHHHHHHHHhcCccccccccccccCCCCCCCchHHH
Q 008231          108 SVTALVVGLLTSATSIPSMRPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEK  187 (573)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~~~~~  187 (573)
                      .+.+++..++.......                      .+.+.+++.|++.|+|.+...+...+.+.+.+|+++     
T Consensus        86 ~~~~~~~~~~~~~~~~~----------------------~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~-----  138 (402)
T TIGR00897        86 LLWCVGHAAFIVFGLGH----------------------ANYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQDN-----  138 (402)
T ss_pred             HHHHHHHHHHHHHhccC----------------------ccHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHHH-----
Confidence            99888876553211000                      246677889999999988877777778889889887     


Q ss_pred             hHHHHHHHHHHHHHhhh-HHHHHHhhhhhcccchhHHHHHHHHHHHHHHHHHHhcCccccccCCCCCchhHHHHHHHHHH
Q 008231          188 AMIFFFNRFYFAISIGS-LFAVIVLVYVQDNVGRGWGYGISAGTMVVAAAILLIGTPWYRFKKPRGSPLTVIWRVLLLAW  266 (573)
Q Consensus       188 ~r~~~~~~~~~~~~ig~-~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (573)
                       |+++.|+++.+.++|. .++|.+++++.+..||+..++......+++.+...+..++.++  ++.+.            
T Consensus       139 -~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~------------  203 (402)
T TIGR00897       139 -LSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFGEMNTLWSALAFVLTGGVIALFSNKDIFT--PQHMQ------------  203 (402)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHhccCCCCC--ccccc------------
Confidence             9999999999999996 6899999999888897766664443333333322232221110  00000            


Q ss_pred             hccCCCCCCCCCcchhcccccCCCCCccchhhhhhhhhhhhhhccccCCcccccchhhHHHHHHH-HhHHHHHHHHHHHH
Q 008231          267 KKRSHPYPDHPSLLNEYQNAKVPHTEKFKCLDKAAIIEDNAVANENKNNSWIVSTVTEVEEVKMV-LKLLPIWATCILFW  345 (573)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~~  345 (573)
                            .+                 ++  ..+..+              .+     ....+.+.. ...+..++....++
T Consensus       204 ------~~-----------------~~--~~~~~~--------------~~-----~~~~~~~~~~~~~~~~~~~~~~~~  239 (402)
T TIGR00897       204 ------TR-----------------EK--FSELGK--------------AA-----TILFTNPNVLLGGMVRIINTIGLF  239 (402)
T ss_pred             ------CC-----------------cc--hhhHHH--------------HH-----HHHHcChhHHHHHHHHHHHHHHHH
Confidence                  00                 00  000000              00     000111111 11111222222233


Q ss_pred             HHhhcccchhhhhhhccccccccceecccccchhhHHHHHHHHHhhhhhhhhhhcccccccCCCchHHHHHHHHHHHHHH
Q 008231          346 TVYSQMTTFTVEQATFMNRKIGSFTVPSGSLSAFLFITILLFTSLNEKVFVPLARKITHSIQGMTSLQRVGTGLIFSVIA  425 (573)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~i~  425 (573)
                      ......+.+. .. .+.+.      ...+.+.....++.++..+..+++.||..+|+.        .  ...+.+...++
T Consensus       240 ~~~~~~p~~~-~~-~g~s~------~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~--------~--~~~~~l~~~~~  301 (402)
T TIGR00897       240 GFAVFLPMFV-AE-LGFST------SEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNT--------V--RWFGGVGCGIF  301 (402)
T ss_pred             HHHHHHHHHH-HH-cCCCh------hHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhH--------H--HHHHHHHHHHH
Confidence            3323333222 11 11111      122333445556667777778888776654421        0  12222222232


Q ss_pred             HHHHHHHHHHHHhhcccCCcccchhHHHHHHHHHHHHHHhhhhhhhheeecccCchhHHHHHHHHHHHHHHHHHHHHHHH
Q 008231          426 MIVSAVIEQQRRETSVQKHIQISAFWLVPQYFLVGAGEAFVYVGQLEFFIREGPERMKSMSTGLFLSAISMGMFVSSMLV  505 (573)
Q Consensus       426 ~i~~~~~~~~~~~~~~~~~~~~~~~~lv~~~~l~g~~~~~~~~~~~~~~~~~~p~~~rg~~~gi~~~~~~lg~~ig~~~~  505 (573)
                      .+.+....         .....+.+...+..++.|++.....+. .....+..| +.||++.|+.+....+|+.++|.+.
T Consensus       302 ~~~l~~~~---------~~~~~~~~~~~~~~~~~G~~~~~~~~~-~~~~~~~~~-~~~g~~~g~~~~~~~lg~~~gp~i~  370 (402)
T TIGR00897       302 TLALYYIP---------QHFGHSFAVALIIAIALGIFLAGYVPL-AAVFPTLAP-KHKGAAMSVLNLSAGLSAFLAPAIA  370 (402)
T ss_pred             HHHHHHHH---------HccCCcHHHHHHHHHHHHHHHHHHHHH-HHHHHhhCc-chhHHHHHHHHHHHHHHHHHHHHHH
Confidence            22222211         000113344455666677766655443 345556555 5799999999999999999999999


Q ss_pred             HHHhhhhccCccccccccchhhHHHHHHHHHHHHHHHHHHH
Q 008231          506 SIVDKITNKHWLRSNLNKGKLNNFYWLLAVLGLLNFMVFLF  546 (573)
Q Consensus       506 ~~i~~~~~~~w~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~  546 (573)
                      +.+.+..+            ....+++.+++.+++.+...+
T Consensus       371 g~l~~~~g------------~~~~~~~~a~~~~i~~~~~~~  399 (402)
T TIGR00897       371 VLFIGFFG------------AIGVVWIFAALYVVSAFLTAF  399 (402)
T ss_pred             HHHHhhcc------------hHHHHHHHHHHHHHHHHHHHH
Confidence            99886431            335667777777666655544

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.93  E-value=9.8e-24  Score=217.66  Aligned_cols=350  Identities=19%  Similarity=0.235  Sum_probs=227.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHH
Q 008231           39 LGTELSERICAMGISMNLVTYLVGDLHLSSAKSATIVTNFMGTLNLLGLLGGFLADAKLGRYLTVAIFASVTALVVGLLT  118 (573)
Q Consensus        39 ~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~  118 (573)
                      +++.++..++.....+.++.++.+++|.|..+.+++.+.+.++..++.++.|+++||+ |||+++.++..+.+++..++.
T Consensus         2 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~l~~~~~~~~~~~~~~~   80 (352)
T PF07690_consen    2 FLAFFLSGFGFSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRF-GRRRVLIIGLLLFALGSLLLA   80 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCeeeEeehhhhhhhHHHHhh
Confidence            4556667777766677777688999999999999999999999999999999999998 999999999999999966666


Q ss_pred             hhccCCCCCCCCCccccccccccccchhhHHHHHHHHHHHHHhcCccccccccccccCCCCCCCchHHHhHHHHHHHHHH
Q 008231          119 SATSIPSMRPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKAMIFFFNRFYF  198 (573)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~  198 (573)
                      +++                          +.+.++++|++.|++.+...+...+++.|++|+++      |++++++.+.
T Consensus        81 ~~~--------------------------~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~------~~~~~~~~~~  128 (352)
T PF07690_consen   81 FAS--------------------------NFWLLLIARFLLGIGSGFFSPASNALIADWFPPEE------RGRAFGILSA  128 (352)
T ss_dssp             HHC--------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCC------HHHHHHHHHH
T ss_pred             hhh--------------------------hHHHHhhhccccccccccccccccccccccchhhh------hhhccccccc
Confidence            542                          45589999999999999999999999999999988      9999999999


Q ss_pred             HHHhhhHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHHHHhcCccccccCCCCCchhHHHHHHHHHHhccCCCCCCCCC
Q 008231          199 AISIGSLFAVIVLVYVQDNVGRGWGYGISAGTMVVAAAILLIGTPWYRFKKPRGSPLTVIWRVLLLAWKKRSHPYPDHPS  278 (573)
Q Consensus       199 ~~~ig~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (573)
                      +.++|..++|.+++++.+..||+++|++.++..++..++.....++.++++++.++.                  ++.  
T Consensus       129 ~~~~g~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~------------------~~~--  188 (352)
T PF07690_consen  129 GFSLGSILGPLLGGFLISYFGWRWAFLISAILSLIAAILFILFLPEPPPPRERESPK------------------ESE--  188 (352)
T ss_dssp             HHHHHHHHHHHHHHHCCCHCHHCCHHHHHHHHHHHHHHHHHCCC---STTTT--SST------------------TTT--
T ss_pred             hhhhhhhcccchhhhhhhccccccccccccchhhhhhhhHhhhhhhccccccccccc------------------ccc--
Confidence            999999999999999999899999999988877776654333333222111111000                  000  


Q ss_pred             cchhcccccCCCCCccchhhhhhhhhhhhhhccccCCcccccchhhHHHHHHHH-hHHHHHHHHHHHHHHhhcccchhhh
Q 008231          279 LLNEYQNAKVPHTEKFKCLDKAAIIEDNAVANENKNNSWIVSTVTEVEEVKMVL-KLLPIWATCILFWTVYSQMTTFTVE  357 (573)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~  357 (573)
                                 .+                     ...++.. ..+...+.+... .....+.....+.......+.+ ..
T Consensus       189 -----------~~---------------------~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~  234 (352)
T PF07690_consen  189 -----------SK---------------------KPKPLKP-GFKSLFKNPVLWILLIAFFLFFFVFSGFSFFLPLY-LQ  234 (352)
T ss_dssp             ----------------------------------HHHCCCH--CTHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH-CC
T ss_pred             -----------cc---------------------ccccccc-ccccccccchhhhhhhhhhHHHHHHHHhhcccchh-hh
Confidence                       00                     0001100 001111222111 1111111111222222222221 11


Q ss_pred             hhhccccccccceecccccchhhHHHHHHHHHhhhhhhhhhhcccccccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008231          358 QATFMNRKIGSFTVPSGSLSAFLFITILLFTSLNEKVFVPLARKITHSIQGMTSLQRVGTGLIFSVIAMIVSAVIEQQRR  437 (573)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~i~~i~~~~~~~~~~  437 (573)
                      +..+.+.     ....+.+..+..+..++...+.+++.+|..++.           ..........++.+.+.....   
T Consensus       235 ~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~---  295 (352)
T PF07690_consen  235 EVLGFSG-----PSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRRR-----------RLLIAILLLILGALGLLLLPF---  295 (352)
T ss_dssp             HHHHCCT-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHH-----------HHHHHHHHHHHHHHHHCCSHH---
T ss_pred             hccCCCH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHH-----------HHHHHHHHHHHHHHHHHHHHH---
Confidence            1112110     012233344555555555667777765543321           123333333333333222210   


Q ss_pred             hhcccCCcccchhHHHHHHHHHHHHHHhhhhhhhheeecccCchhHHHHHHHHHHHHHHHHHHHH
Q 008231          438 ETSVQKHIQISAFWLVPQYFLVGAGEAFVYVGQLEFFIREGPERMKSMSTGLFLSAISMGMFVSS  502 (573)
Q Consensus       438 ~~~~~~~~~~~~~~lv~~~~l~g~~~~~~~~~~~~~~~~~~p~~~rg~~~gi~~~~~~lg~~ig~  502 (573)
                              ..+..+.....++.|++.+...+...+++.+..|++.+|++.|+.++..++|+.++|
T Consensus       296 --------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~igP  352 (352)
T PF07690_consen  296 --------SSSPVWLIIALFLIGFGFGIVFPILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIGP  352 (352)
T ss_dssp             --------HCHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             --------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence                    113344555777889999999999999999999999999999999999999999886

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.92  E-value=2.4e-23  Score=224.22  Aligned_cols=378  Identities=11%  Similarity=0.053  Sum_probs=229.8

Q ss_pred             hcCCCchhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCccccccccccc
Q 008231           63 DLHLSSAKSATIVTNFMGTLNLLGLLGGFLADAKLGRYLTVAIFASVTALVVGLLTSATSIPSMRPPQCDDYRRKHHQCI  142 (573)
Q Consensus        63 ~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  142 (573)
                      +++++..+.|++.+.+.+++.++++++|+++||+ |||+++.++.++..++.+++.++.+                    
T Consensus        70 ~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-g~r~~l~~~~~~~~~~~~~~~~~~~--------------------  128 (465)
T TIGR00894        70 NFKWSGALQGLILSSHFYGQIIIQIPVGYLAGKY-VFKWSIGIGMFLSSVISIVIPWAAG--------------------  128 (465)
T ss_pred             CCCCCHHHhhHHHHHHHHHHHHHHcchHHHHHHh-CcchhhHHHHHHHHHHHHHHHHHHH--------------------
Confidence            7899999999999999999999999999999998 9999999999988888877655321                    


Q ss_pred             cchhhHHHHHHHHHHHHHhcCccccccccccccCCCCCCCchHHHhHHHHHHHHHHHHHhhhHHHHHHhhhhhccc-chh
Q 008231          143 EANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKAMIFFFNRFYFAISIGSLFAVIVLVYVQDNV-GRG  221 (573)
Q Consensus       143 ~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~~~~~l~~~~-g~~  221 (573)
                          .+...+++.|+++|++.+...+....+++|++|+++      |+++.++.+.+.++|.+++|++++++.+.+ ||+
T Consensus       129 ----~~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~  198 (465)
T TIGR00894       129 ----GGIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKE------RSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWP  198 (465)
T ss_pred             ----cCchHHHHHHHHHHHhcccchhhHHHHHHhcCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC
Confidence                135678899999999999999999999999999988      999999999999999999999999999884 999


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCccccccCCCCCchhHHHHHHHHHHhccCCCCCCCCCcchhcccccCCCCCccchhhhhh
Q 008231          222 WGYGISAGTMVVAAAILLIGTPWYRFKKPRGSPLTVIWRVLLLAWKKRSHPYPDHPSLLNEYQNAKVPHTEKFKCLDKAA  301 (573)
Q Consensus       222 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (573)
                      ++|++.++..++..+.++...++.++.++..+. .+ .+.    .++. .+                .+.+.        
T Consensus       199 ~~f~i~~~~~~~~~~~~~~~~~~~p~~~~~~~~-~~-~~~----i~~~-~~----------------~~~~~--------  247 (465)
T TIGR00894       199 MIFYVFGIVGCAWSLLWFVFPADDPSIHPCISK-FE-KKY----INSS-LQ----------------GQKGS--------  247 (465)
T ss_pred             eehhhhhHHHHHHHHHHHHHhcCCcccCCCCCH-HH-HHH----HHhh-cc----------------cccCC--------
Confidence            999988776655544444433322211111100 00 000    0000 00                00000        


Q ss_pred             hhhhhhhhccccCCcccccchhhHHHHHHHHhHHHHHHHHHHHHHHhhcccchhhhhhhccccccccceecccccchhhH
Q 008231          302 IIEDNAVANENKNNSWIVSTVTEVEEVKMVLKLLPIWATCILFWTVYSQMTTFTVEQATFMNRKIGSFTVPSGSLSAFLF  381 (573)
Q Consensus       302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  381 (573)
                               .+...+|+    ...++.......+..+.....++....+++.++.. ..+.+      ....+.+..+..
T Consensus       248 ---------~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~-~~g~s------~~~~g~~~~~~~  307 (465)
T TIGR00894       248 ---------TRQSLPIK----AIPKSLPVWAIWFAIFGHFWLYTILPTYLPTFISW-VLRVS------GKENGLLSSLPY  307 (465)
T ss_pred             ---------CCCCCCHH----HHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCcC------hHHhHHHHHHHH
Confidence                     00001111    00111111222222223333333333444433322 11222      113445566667


Q ss_pred             HHHHHHHHhhhhhhhhhhcccccccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCcccchhHHHHHHHHHHH
Q 008231          382 ITILLFTSLNEKVFVPLARKITHSIQGMTSLQRVGTGLIFSVIAMIVSAVIEQQRRETSVQKHIQISAFWLVPQYFLVGA  461 (573)
Q Consensus       382 ~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~lv~~~~l~g~  461 (573)
                      ++.++...+.+++.|+..+|...+   .....++..+..+...+.+.+....         .  ..+.+..+..+.+.+.
T Consensus       308 ~~~~i~~~~~g~l~d~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~---------~--~~~~~~~~~~~~l~~~  373 (465)
T TIGR00894       308 LFAWLCSIFAGYLADFLKSSKTLS---LTAARKIFNGIGGLGPGIFAYALPY---------L--SAAFYLTIIILTLANA  373 (465)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCCc---HHHHHHHHHHHHHHHHHHHHHHHHH---------c--CCchHHHHHHHHHHHH
Confidence            777777888888888766553221   1111122222222222222211110         0  1122333334444444


Q ss_pred             HHHhhhhhhhheeecccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCccccccccchhhHHHHHHHHHHHHHH
Q 008231          462 GEAFVYVGQLEFFIREGPERMKSMSTGLFLSAISMGMFVSSMLVSIVDKITNKHWLRSNLNKGKLNNFYWLLAVLGLLNF  541 (573)
Q Consensus       462 ~~~~~~~~~~~~~~~~~p~~~rg~~~gi~~~~~~lg~~ig~~~~~~i~~~~~~~w~~~~~~~~~~~~~~~~~a~~~~l~~  541 (573)
                      +.....+..+....+..|+ .+|.+.|+.++...+|+.++|.+.|++.+..+         .+.....|++.+++.+++.
T Consensus       374 ~~~~~~~~~~~~~~~~~~~-~~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~~---------~~~~~~~f~~~~~~~~i~~  443 (465)
T TIGR00894       374 VSSGPLAGVLINSLDLAPR-FLGFIKGITGLPGFIGGLIASTLAGNILSQDS---------KNVWLIVFLIMAFVNILCV  443 (465)
T ss_pred             HhhhhhhhhhhchhhcChh-HHHHHHHHHHHHHHHHHHHHHHhhheeeCCCC---------chHHHHHHHHHHHHHHHHH
Confidence            4444455566666677775 89999999999999999999999887764211         1223456667777777666


Q ss_pred             HHHHH
Q 008231          542 MVFLF  546 (573)
Q Consensus       542 ~~~~~  546 (573)
                      +++..
T Consensus       444 i~~~~  448 (465)
T TIGR00894       444 IFYLI  448 (465)
T ss_pred             HHeee
Confidence            55443

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.92  E-value=9.2e-23  Score=213.95  Aligned_cols=177  Identities=9%  Similarity=0.068  Sum_probs=151.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHH
Q 008231           33 LAAGLILGTELSERICAMGISMNLVTYLVGDLHLSSAKSATIVTNFMGTLNLLGLLGGFLADAKLGRYLTVAIFASVTAL  112 (573)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~  112 (573)
                      +.++.+.+..+......+...+.+| .+.+++|.|..+.+++.+.+.++..+++++.|+++||+ |||+++.++..+.++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~   80 (382)
T PRK10091          3 KVILSLALGTFGLGMAEFGIMGVLT-ELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRY-SLKHILLFLVALCVI   80 (382)
T ss_pred             chHHHHHHHHHHHHhhHHHHHhChH-HHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccC-ccHHHHHHHHHHHHH
Confidence            4566777777777777766666665 45779999999999999999999999999999999998 999999999999999


Q ss_pred             HHHHHHhhccCCCCCCCCCccccccccccccchhhHHHHHHHHHHHHHhcCccccccccccccCCCCCCCchHHHhHHHH
Q 008231          113 VVGLLTSATSIPSMRPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKAMIFF  192 (573)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~  192 (573)
                      +.+++++++                          +.+.+++.|++.|++.+...+....++.|++|+++      |+++
T Consensus        81 ~~~l~~~~~--------------------------~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------~~~~  128 (382)
T PRK10091         81 GNAMFTLSS--------------------------SYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGK------VTAA  128 (382)
T ss_pred             HHHHHHHhC--------------------------cHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHH------hhHH
Confidence            999988863                          67889999999999999888888888999998877      9999


Q ss_pred             HHHHHHHHHhhhHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHHHHhcCc
Q 008231          193 FNRFYFAISIGSLFAVIVLVYVQDNVGRGWGYGISAGTMVVAAAILLIGTP  243 (573)
Q Consensus       193 ~~~~~~~~~ig~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~  243 (573)
                      ++.+..+..+|..++|.+++++.+..|||++|++.++..++..+......|
T Consensus       129 ~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~lp  179 (382)
T PRK10091        129 VAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLLIAVFNIAVLASIYFWVP  179 (382)
T ss_pred             HHHHHHHHHHHHHHhccHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            999999999999999999999999899999999887765555444333334

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.92  E-value=1.5e-22  Score=211.90  Aligned_cols=355  Identities=14%  Similarity=0.101  Sum_probs=227.8

Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHH
Q 008231           31 GWLAAGLILGTELSERICAMGISMNLVTYLVGDLHLSSAKSATIVTNFMGTLNLLGLLGGFLADAKLGRYLTVAIFASVT  110 (573)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~  110 (573)
                      +++.++.+....+....+.....+.+| ++.+++|.|..+.+++.+.+.++..++.++.|+++||+ |||+++.++..+.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~-g~r~~~~~~~~~~   80 (385)
T TIGR00710         3 AKAFALLLGCLSILGPLGIDMYLPAFP-EIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRY-GRRPVLLLGLFIF   80 (385)
T ss_pred             chHHHHHHHHHHHHHHHHHHHhcccHH-HHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhc-CChHHHHHHHHHH
Confidence            334445555555555566555555444 56778999999999999999999999999999999998 9999999999999


Q ss_pred             HHHHHHHHhhccCCCCCCCCCccccccccccccchhhHHHHHHHHHHHHHhcCccccccccccccCCCCCCCchHHHhHH
Q 008231          111 ALVVGLLTSATSIPSMRPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKAMI  190 (573)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~  190 (573)
                      +++.+++.++.                          +.+.+++.|++.|++.+...+...+++.|++|+++      |+
T Consensus        81 ~~~~~~~~~~~--------------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~  128 (385)
T TIGR00710        81 ALSSLGLALSN--------------------------NIETLLVLRFVQAFGASAGSVISQALVRDIYPGEE------LS  128 (385)
T ss_pred             HHHHHHHHHHc--------------------------cHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHH------HH
Confidence            99988888753                          56788999999999999999999999999999887      99


Q ss_pred             HHHHHHHHHHHhhhHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHHHHhcCccccccCCCCCchhHHHHHHHHHHhccC
Q 008231          191 FFFNRFYFAISIGSLFAVIVLVYVQDNVGRGWGYGISAGTMVVAAAILLIGTPWYRFKKPRGSPLTVIWRVLLLAWKKRS  270 (573)
Q Consensus       191 ~~~~~~~~~~~ig~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (573)
                      +++++.+...++|..++|.+++++.+..||+++|++.++..++..+...+..|+.++++++ +....             
T Consensus       129 ~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-------------  194 (385)
T TIGR00710       129 RIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAFLSLAGILLSALIFFILPETLPYEAR-IQIST-------------  194 (385)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhCCCCCCCccc-CCHHH-------------
Confidence            9999999999999999999999999989999999887776655554444433332111100 00000             


Q ss_pred             CCCCCCCCcchhcccccCCCCCccchhhhhhhhhhhhhhccccCCcccccchhhHHHHHHHHhH-HHHHHHHHHHHHHhh
Q 008231          271 HPYPDHPSLLNEYQNAKVPHTEKFKCLDKAAIIEDNAVANENKNNSWIVSTVTEVEEVKMVLKL-LPIWATCILFWTVYS  349 (573)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~  349 (573)
                                               ..+..                      ....+.+..... +........++....
T Consensus       195 -------------------------~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (385)
T TIGR00710       195 -------------------------YFETF----------------------LLLLKSKMFWGYALIYGASFGGFFAFFS  227 (385)
T ss_pred             -------------------------HHHHH----------------------HHHHcCchhHHHHHHHHHHHHHHHHHHH
Confidence                                     00000                      000001111111 111111111112111


Q ss_pred             cccchhhhhhhccccccccceecccccchhhHHHHHHHHHhhhhhhhhhhcccccccCCCchHHHHHHHHHHHHHHHHHH
Q 008231          350 QMTTFTVEQATFMNRKIGSFTVPSGSLSAFLFITILLFTSLNEKVFVPLARKITHSIQGMTSLQRVGTGLIFSVIAMIVS  429 (573)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~i~~i~~  429 (573)
                      ..+ .+..+..+.+      ....+.+.....++.++..++.+++.+|..+|.           .+..+..+..++.+++
T Consensus       228 ~~~-~~~~~~~g~~------~~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~-----------~~~~~~~~~~~~~~~~  289 (385)
T TIGR00710       228 GAP-FVYIDIMGVS------PSVFGLLFALNIIAMIFGGFLNGRFIKKWGAKS-----------LLRMGLILFAVSAVLL  289 (385)
T ss_pred             cCh-HHHHHHcCCC------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH-----------HHHHHHHHHHHHHHHH
Confidence            111 1111111111      112334445555666677777777766554432           2444555555555544


Q ss_pred             HHHHHHHHhhcccCCcccchhHHHHHHHHHHHHHHhhhhhhhheeecccCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008231          430 AVIEQQRRETSVQKHIQISAFWLVPQYFLVGAGEAFVYVGQLEFFIREGPERMKSMSTGLFLSAISMGMFVSSMLVSIV  508 (573)
Q Consensus       430 ~~~~~~~~~~~~~~~~~~~~~~lv~~~~l~g~~~~~~~~~~~~~~~~~~p~~~rg~~~gi~~~~~~lg~~ig~~~~~~i  508 (573)
                      .....         ........++...++.+++.....+....+..|..| +.+|++.++.+.....++.+.+.+.+..
T Consensus       290 ~~~~~---------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~i~~~~~~~~  358 (385)
T TIGR00710       290 EITAI---------LGLGSWAMIIGPMMFVGIGNSMISSIAMAYALEDFP-HVAGTASALFGTLRLVLGAIVGYLVSLI  358 (385)
T ss_pred             HHHHH---------hccchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-ccchHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            43311         001123344555677788888888888888888887 5699999999887766555555555543

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>TIGR00895 2A0115 benzoate transport

Probab=99.92  E-value=1.4e-22  Score=212.48  Aligned_cols=382  Identities=12%  Similarity=0.053  Sum_probs=230.8

Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHH
Q 008231           31 GWLAAGLILGTELSERICAMGISMNLVTYLVGDLHLSSAKSATIVTNFMGTLNLLGLLGGFLADAKLGRYLTVAIFASVT  110 (573)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~  110 (573)
                      +++.+.......+......+. ..+..+++.+++|++..+.+++.+.+.++..++.++.|+++||+ |||+++..+..+.
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~~   92 (398)
T TIGR00895        15 QWRAIILSFLIMLMDGYDLAA-MGFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRI-GRKRVLLWSILLF   92 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-HHhhHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHh-hhHHHHHHHHHHH
Confidence            444445555555555555543 34455667788999999999999999999999999999999998 9999999999988


Q ss_pred             HHHHHHHHhhccCCCCCCCCCccccccccccccchhhHHHHHHHHHHHHHhcCccccccccccccCCCCCCCchHHHhHH
Q 008231          111 ALVVGLLTSATSIPSMRPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKAMI  190 (573)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~  190 (573)
                      .++..++.++.                          +.+.+++.|++.|++.+...+...+++.|++|+++      |+
T Consensus        93 ~~~~~~~~~~~--------------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------r~  140 (398)
T TIGR00895        93 SVFTLLCALAT--------------------------NVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRF------RG  140 (398)
T ss_pred             HHHHHHHHHcc--------------------------chHHHHHHHHHHhcccccchhhHHHHHHHHcCHHh------hc
Confidence            88888877653                          56678899999999999999999999999999887      99


Q ss_pred             HHHHHHHHHHHhhhHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHHHHhcCccccccCCCCCchhHHHHHHHHHHhccC
Q 008231          191 FFFNRFYFAISIGSLFAVIVLVYVQDNVGRGWGYGISAGTMVVAAAILLIGTPWYRFKKPRGSPLTVIWRVLLLAWKKRS  270 (573)
Q Consensus       191 ~~~~~~~~~~~ig~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (573)
                      +++++.+.+.++|..+++.+++++.+..||++.|++.++..++..+......++.+....++++ +...+.. .....+.
T Consensus       141 ~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~  218 (398)
T TIGR00895       141 TAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYVGGIAPLLLLLLLMRFLPESIDFLVSKRP-ETVRRIV-NAIAPQM  218 (398)
T ss_pred             hhHhhHhhHHHHHHHHHHHHHHHHhhcccceeehhhhhhHHHHHHHHHHHhCCCCChHHHhcCH-HHHHHHH-HHHHHhc
Confidence            9999999999999999999999999999999999887554444444333333332211101100 0000000 0000000


Q ss_pred             CCCCCCCCcchhcccccCCCCCccchhhhhhhhhhhhhhccccCCcccccchhhHHHHHHHHh-HHHHHHHHHHHHHHhh
Q 008231          271 HPYPDHPSLLNEYQNAKVPHTEKFKCLDKAAIIEDNAVANENKNNSWIVSTVTEVEEVKMVLK-LLPIWATCILFWTVYS  349 (573)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~  349 (573)
                      ...++  +   .     ....+...  .             +....++.....  ...+.... ....++....++....
T Consensus       219 ~~~~~--~---~-----~~~~~~~~--~-------------~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~  271 (398)
T TIGR00895       219 QAEAQ--S---A-----LPEQKATQ--G-------------TKRSVFKALFQG--KTARITVLLWLLYFMLLVGVYFLTN  271 (398)
T ss_pred             ccccc--c---c-----cccccccc--c-------------hhhHHHHHHhcc--hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            00000  0   0     00000000  0             000000000000  00111111 1111111111111111


Q ss_pred             cccchhhhhhhccccccccceecccccchhhHHHHHHHHHhhhhhhhhhhcccccccCCCchHHHHHHHHHHHHHHHHHH
Q 008231          350 QMTTFTVEQATFMNRKIGSFTVPSGSLSAFLFITILLFTSLNEKVFVPLARKITHSIQGMTSLQRVGTGLIFSVIAMIVS  429 (573)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~i~~i~~  429 (573)
                      ..+ .+.. ..+.+      ....+.+.....++.++..++.+++.+++.+|            +...+..+..+...+.
T Consensus       272 ~~~-~~~~-~~g~~------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~------------~~~~~~~~~~~~~~~~  331 (398)
T TIGR00895       272 WLP-KLMV-ELGFS------LSLAATGGALFNFGGVIGSIIFGWLADRLGPR------------VTALLLLLGAVFAVLV  331 (398)
T ss_pred             HHH-HHHH-HcCCC------HHHHHHHHHHHHHHHHHHHHHHHHHHhhcchH------------HHHHHHHHHHHHHHHH
Confidence            111 1111 11111      11223344455566666677777776554333            1333333333332222


Q ss_pred             HHHHHHHHhhcccCCcccchhHHHHHHHHHHHHHHhhhhhhhheeecccCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008231          430 AVIEQQRRETSVQKHIQISAFWLVPQYFLVGAGEAFVYVGQLEFFIREGPERMKSMSTGLFLSAISMGMFVSSMLVSIV  508 (573)
Q Consensus       430 ~~~~~~~~~~~~~~~~~~~~~~lv~~~~l~g~~~~~~~~~~~~~~~~~~p~~~rg~~~gi~~~~~~lg~~ig~~~~~~i  508 (573)
                      ....             .+.+......++.+++.+...+..++++.+..|++.||++.|+.+....+|..+++.+.|++
T Consensus       332 ~~~~-------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~G~l  397 (398)
T TIGR00895       332 GSTL-------------FSPTLLLLLGAIAGFFVNGGQSGLYALMALFYPTAIRATGVGWAIGIGRLGAIIGPILAGYL  397 (398)
T ss_pred             HHHh-------------hCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHhc
Confidence            2210             12334455667888888888899999999999999999999999999999999999998764

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.92  E-value=2.9e-22  Score=210.06  Aligned_cols=158  Identities=11%  Similarity=0.034  Sum_probs=138.8

Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHH
Q 008231           31 GWLAAGLILGTELSERICAMGISMNLVTYLVGDLHLSSAKSATIVTNFMGTLNLLGLLGGFLADAKLGRYLTVAIFASVT  110 (573)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~  110 (573)
                      +.+.++.++.+.++...++..+.+.+|.|+. ++|.|..+.|++.+.+.++..+++++.|+++||+ |||+++..+..+.
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~-~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~-g~k~~~~~~~~~~   81 (381)
T PRK03633          4 YTRPVLLLLCGLLLLTLAIAVLNTLVPLWLA-QEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRI-GFNRSYYLASLIF   81 (381)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHHH
Confidence            3457888889999999888888888888876 6899999999999999999999999999999998 9999999999999


Q ss_pred             HHHHHHHHhhccCCCCCCCCCccccccccccccchhhHHHHHHHHHHHHHhcCccccccccccccCCCCCCCchHHHhHH
Q 008231          111 ALVVGLLTSATSIPSMRPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKAMI  190 (573)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~  190 (573)
                      +++..+++++                          ++.+.++++|++.|++.+...+...+.+.+..++++      |+
T Consensus        82 ~~~~~~~~~~--------------------------~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------~~  129 (381)
T PRK03633         82 AAGCAGLGLM--------------------------VGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRN------RG  129 (381)
T ss_pred             HHHHHHHHHh--------------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH------HH
Confidence            9998888876                          367789999999999999988887777788888776      99


Q ss_pred             HHHHHHHHHHHhhhHHHHHHhhhhhcccchhH
Q 008231          191 FFFNRFYFAISIGSLFAVIVLVYVQDNVGRGW  222 (573)
Q Consensus       191 ~~~~~~~~~~~ig~~~~~~~~~~l~~~~g~~~  222 (573)
                      +++++++.+.++|..+||.+++.+.+...+..
T Consensus       130 ~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~  161 (381)
T PRK03633        130 RLLAAYMMVYYLGTVLGQLLVSKVSTELMSVL  161 (381)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcccccccchH
Confidence            99999999999999999999999877543333

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.92  E-value=1.2e-22  Score=220.37  Aligned_cols=168  Identities=18%  Similarity=0.132  Sum_probs=146.8

Q ss_pred             CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHH
Q 008231           29 TGGWLAAGLILGTELSERICAMGISMNLVTYLVGDLHLSSAKSATIVTNFMGTLNLLGLLGGFLADAKLGRYLTVAIFAS  108 (573)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~  108 (573)
                      +.+|+.+..+.+..++..++.+.... +.+++.+++|+|..+.+++.+.+.++..++.+++|+++||+ |||+++.++..
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~   93 (496)
T PRK03893         16 RAQWKAFSAAWLGYLLDGFDFVLITL-VLTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRY-GRRLAMVISIV   93 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHH
Confidence            34566777777777777777765544 44567789999999999999999999999999999999998 99999999999


Q ss_pred             HHHHHHHHHHhhccCCCCCCCCCccccccccccccchhhHHHHHHHHHHHHHhcCccccccccccccCCCCCCCchHHHh
Q 008231          109 VTALVVGLLTSATSIPSMRPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKA  188 (573)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (573)
                      +.+++.++++++                          .+.+.+++.|++.|++.+...+...+++.|.+|+++      
T Consensus        94 ~~~~~~~~~~~~--------------------------~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------  141 (496)
T PRK03893         94 LFSVGTLACGFA--------------------------PGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHL------  141 (496)
T ss_pred             HHHHHHHHHHHH--------------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH------
Confidence            999999888876                          367789999999999999999999999999999887      


Q ss_pred             HHHHHHHHHHHHHhhhHHHHHHhhhhhcccchhHHHHHHHHH
Q 008231          189 MIFFFNRFYFAISIGSLFAVIVLVYVQDNVGRGWGYGISAGT  230 (573)
Q Consensus       189 r~~~~~~~~~~~~ig~~~~~~~~~~l~~~~g~~~~f~~~~~~  230 (573)
                      |++++++++.+.++|..++|.+.+++.+.+||++.|++.++.
T Consensus       142 r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~f~~~~~~  183 (496)
T PRK03893        142 RNKASGFLISGFSIGAVVAAQVYSLVVPVWGWRALFFIGILP  183 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHH
Confidence            999999999999999999999999999999999999875443

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.92  E-value=4.2e-22  Score=209.79  Aligned_cols=185  Identities=13%  Similarity=0.088  Sum_probs=131.6

Q ss_pred             ccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHH-HHHhHHHHHhhhccchhHHHH-
Q 008231           27 SKTGGWLAAGLILGTELSERICAMGISMNLVTYLVGDLHLSSAKSATIVTNFMGTLN-LLGLLGGFLADAKLGRYLTVA-  104 (573)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~-~~~~~~G~laDr~~Grr~~~~-  104 (573)
                      +.+......+...+..++..++...+.+.++.|+.+++|+|.++.|++.+...+... +.++++|+ +||+ ||||.++ 
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~-g~r~~~~~   86 (393)
T PRK15011          9 SAKSFDLTSTAFLIVAFLTGIAGALQTPTLSIFLTDEVHARPAMVGFFFTGSAVIGILVSQFLAGR-SDKR-GDRKSLIV   86 (393)
T ss_pred             cchhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-Hhcc-cchhHHHH
Confidence            333344456777777889999988889999999999999999999999877666545 55555555 9998 9988754 


Q ss_pred             HHHHHHHHHHHHHHhhccCCCCCCCCCccccccccccccchhhHHHHHHHHHHHHHhcCccccccccccccCCCCCCCch
Q 008231          105 IFASVTALVVGLLTSATSIPSMRPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPK  184 (573)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~~  184 (573)
                      .+.++.+++..+.+++.                          +.+.+++.+.+.+...+...|...++..|+.++++. 
T Consensus        87 ~~~~~~~~~~~~~~~~~--------------------------~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  139 (393)
T PRK15011         87 FCCLLGVLACTLFAWNR--------------------------NYFVLLFVGVFLSSFGSTANPQMFALAREHADKTGR-  139 (393)
T ss_pred             HHHHHHHHHHHHHHHhh--------------------------HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccc-
Confidence            55555566666666652                          455555444443333445667777777776665440 


Q ss_pred             HHHhHHHHHHHHHHHHHhhhHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHHHHhcCc
Q 008231          185 EEKAMIFFFNRFYFAISIGSLFAVIVLVYVQDNVGRGWGYGISAGTMVVAAAILLIGTP  243 (573)
Q Consensus       185 ~~~~r~~~~~~~~~~~~ig~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~  243 (573)
                         ..+...++.+.+.++|.++||.+++++.+.+|||++|++.++..++..+...+..|
T Consensus       140 ---~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~  195 (393)
T PRK15011        140 ---EAVMFSSFLRAQVSLAWVIGPPLAYALAMGFSFTVMYLSAAVAFIVCGVMVWLFLP  195 (393)
T ss_pred             ---hHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhhcC
Confidence               02445578888999999999999999999899999999887766555544444344

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.92  E-value=2.3e-22  Score=206.73  Aligned_cols=347  Identities=20%  Similarity=0.265  Sum_probs=255.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHH
Q 008231           36 GLILGTELSERICAMGISMNLVTYLVGDLHLSSAKSATIVTNFMGTLNLLGLLGGFLADAKLGRYLTVAIFASVTALVVG  115 (573)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~  115 (573)
                      +.+....+....+.+...+..+.|.+ ++|.+..+.+++.+...+...++.++.|+++||+ |||+.+.++..+..++..
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~-g~r~~~~~~~~~~~~~~~   79 (352)
T cd06174           2 LLLFLGFFLSGLDRGLLSPALPLLAE-DLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRF-GRRRVLLLGLLLFALGSL   79 (352)
T ss_pred             HHHHHHHHHHHHhhhhhHhhHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-CCchhhHHHHHHHHHHHH
Confidence            34556677777888777777777764 6799999999999999999999999999999998 999999999999999998


Q ss_pred             HHHhhccCCCCCCCCCccccccccccccchhhHHHHHHHHHHHHHhcCccccccccccccCCCCCCCchHHHhHHHHHHH
Q 008231          116 LLTSATSIPSMRPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKAMIFFFNR  195 (573)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  195 (573)
                      ++.+.                          .+.+.++++|++.|++.+...+...+++.|++|+++      |++.+++
T Consensus        80 ~~~~~--------------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~  127 (352)
T cd06174          80 LLAFA--------------------------SSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKE------RGRALGL  127 (352)
T ss_pred             HHHHh--------------------------ccHHHHHHHHHHHHcccccccHhHHHHHHHhCCccc------hhhhhhH
Confidence            88875                          267789999999999999999999999999999988      9999999


Q ss_pred             HHHHHHhhhHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHHHHhcCccccccCCCCCchhHHHHHHHHHHhccCCCCCC
Q 008231          196 FYFAISIGSLFAVIVLVYVQDNVGRGWGYGISAGTMVVAAAILLIGTPWYRFKKPRGSPLTVIWRVLLLAWKKRSHPYPD  275 (573)
Q Consensus       196 ~~~~~~ig~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (573)
                      .+...++|..++|.+++.+.+..+|++.|++.++..++..+...+..|                                
T Consensus       128 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------  175 (352)
T cd06174         128 FSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLALLLLFLLR--------------------------------  175 (352)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH--------------------------------
Confidence            999999999999999999999889999999887766655544332110                                


Q ss_pred             CCCcchhcccccCCCCCccchhhhhhhhhhhhhhccccCCcccccchhhHHHHHHHHhHHHHHHHHHHHHHHhhcccchh
Q 008231          276 HPSLLNEYQNAKVPHTEKFKCLDKAAIIEDNAVANENKNNSWIVSTVTEVEEVKMVLKLLPIWATCILFWTVYSQMTTFT  355 (573)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  355 (573)
                                                                           +.....+..+.............+.+ 
T Consensus       176 -----------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~-  201 (352)
T cd06174         176 -----------------------------------------------------LLLLLALAFFLLSFGYYGLLTYLPLY-  201 (352)
T ss_pred             -----------------------------------------------------HHHHHHHHHHHHHhHHHHHHHHHHHH-
Confidence                                                                 00000111111111111111111111 


Q ss_pred             hhhhhccccccccceecccccchhhHHHHHHHHHhhhhhhhhhhcccccccCCCchHHHHHHHHHHHHHHHHHHHHHHHH
Q 008231          356 VEQATFMNRKIGSFTVPSGSLSAFLFITILLFTSLNEKVFVPLARKITHSIQGMTSLQRVGTGLIFSVIAMIVSAVIEQQ  435 (573)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~i~~i~~~~~~~~  435 (573)
                      ..+..+.+      ....+.......++.++..++.+++.+|..+|+.          .+..+.++..++++......  
T Consensus       202 ~~~~~~~~------~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~----------~~~~~~~~~~i~~~~~~~~~--  263 (352)
T cd06174         202 LQEVLGLS------AAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRL----------LLLIGLLLAALGLLLLALAP--  263 (352)
T ss_pred             HHHhcCCC------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH----------HHHHHHHHHHHHHHHHHHhc--
Confidence            11110111      1123445566667777777777777666544420          36677777777777665531  


Q ss_pred             HHhhcccCCcccchhHHHHHHHHHHHHHHhhhhhhhheeecccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccC
Q 008231          436 RRETSVQKHIQISAFWLVPQYFLVGAGEAFVYVGQLEFFIREGPERMKSMSTGLFLSAISMGMFVSSMLVSIVDKITNKH  515 (573)
Q Consensus       436 ~~~~~~~~~~~~~~~~lv~~~~l~g~~~~~~~~~~~~~~~~~~p~~~rg~~~gi~~~~~~lg~~ig~~~~~~i~~~~~~~  515 (573)
                                  +.+......++.+++.+...+...+++.|..|++.|++..|+.+....+|+.+++.+.+.+.+..   
T Consensus       264 ------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~---  328 (352)
T cd06174         264 ------------SLALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTG---  328 (352)
T ss_pred             ------------cHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---
Confidence                        25566778889999999999999999999999999999999999999999999999999987532   


Q ss_pred             ccccccccchhhHHHHHHHHHHHHHHHHH
Q 008231          516 WLRSNLNKGKLNNFYWLLAVLGLLNFMVF  544 (573)
Q Consensus       516 w~~~~~~~~~~~~~~~~~a~~~~l~~~~~  544 (573)
                               +....+++.+++.+++.+..
T Consensus       329 ---------~~~~~~~~~~~~~~i~~i~~  348 (352)
T cd06174         329 ---------GYGGVFLILAALALLAALLL  348 (352)
T ss_pred             ---------CcchHHHHHHHHHHHHHHHh
Confidence                     12345666666666655543

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=99.92  E-value=1.4e-22  Score=222.64  Aligned_cols=333  Identities=26%  Similarity=0.432  Sum_probs=261.7

Q ss_pred             HHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHhhccCCCC
Q 008231           47 ICAMGISMNLVTYLVGDLHLSSAKSATIVTNFMGTLNLLGLLGGFLADAKLGRYLTVAIFASVTALVVGLLTSATSIPSM  126 (573)
Q Consensus        47 ~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~  126 (573)
                      ++||++...+..|+.+.+|++.+++..+...+.....+.++++|+++|+++||++++.++.++..+|..++++++. +..
T Consensus         1 FsyYGm~aiLvlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~-~~~   79 (654)
T TIGR00926         1 FSYYGMRTILVLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAI-PSS   79 (654)
T ss_pred             CceeecHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccC-ccc
Confidence            3689999999999999999999999999999999999999999999999999999999999999999988887532 210


Q ss_pred             CCCCCccccccccccccchhhHHHHHHHHHHHHHhcCccccccccccccCCCCCCCchHHHhHHHHHHHHHHHHHhhhHH
Q 008231          127 RPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKAMIFFFNRFYFAISIGSLF  206 (573)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~  206 (573)
                      .                 ........+++.++.++|.|++.|+..+...|+++++++   .+|.++++++++++|+|+.+
T Consensus        80 ~-----------------~~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~---~~~~s~F~~fY~~iNiGSli  139 (654)
T TIGR00926        80 G-----------------HPLHDLLDLLGLALIALGTGGIKPCVSAFGGDQFEERQL---SLRSRFFSFFYFAINAGSLI  139 (654)
T ss_pred             c-----------------cchHHHHHHHHHHHHHhhccccccCchhhhHhhcCccch---hHHHHHHHHHHHHHHHHHHH
Confidence            0                 002344577889999999999999999999999986542   23899999999999999999


Q ss_pred             HHHHhhhhhccc-------chhHHHHHHHHHHHHHHHHHHhcCccccccCCCCCchhHHHHHHHHHHhccCCCCCCCCCc
Q 008231          207 AVIVLVYVQDNV-------GRGWGYGISAGTMVVAAAILLIGTPWYRFKKPRGSPLTVIWRVLLLAWKKRSHPYPDHPSL  279 (573)
Q Consensus       207 ~~~~~~~l~~~~-------g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (573)
                      ++++.+++.+..       +|...|.++++.+++++++.....+.+++.++.++......+.+....+.+....+...  
T Consensus       140 s~~i~~~l~~~~~~fg~~~~~~~aF~i~~i~m~ia~lvf~~g~k~y~~~~p~gs~l~~v~~vi~~a~~~~~~~~~~~~--  217 (654)
T TIGR00926       140 STIITPILRGDVGCFGCQDCYPLAFGVPAILMILALIVFMAGSKMYKKKPPKGNIVSKVIKCIVTALRKRFSTRSEHW--  217 (654)
T ss_pred             HHHHHHHHHHhhcccccCcchHHHHHHHHHHHHHHHHHHHHhccccCCCCCCccHHHHHHHHHHHHHHHhhccCCccc--
Confidence            999999997443       69999999999999988887777777776666666665555555555544322111100  


Q ss_pred             chhcccccCCCCCccchhhhhhhhhhhhhhccccCCcccccchhhHHHHHHHHhHHHHHHHHHHHHHHhhcccchhhhhh
Q 008231          280 LNEYQNAKVPHTEKFKCLDKAAIIEDNAVANENKNNSWIVSTVTEVEEVKMVLKLLPIWATCILFWTVYSQMTTFTVEQA  359 (573)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  359 (573)
                                   ...+.+....             .+   ....+++.+++++.+.+++...++|..+.|..+....+.
T Consensus       218 -------------~~~~ld~a~~-------------~~---~~~~V~evkrll~il~l~i~~~ifw~~~~Q~~s~~~~qa  268 (654)
T TIGR00926       218 -------------PLHWLDYAKD-------------KH---DIRMIRSTKRLLRVLVLFIPLPMFWALFDQQGSRWTLQA  268 (654)
T ss_pred             -------------chhHHHHhcc-------------cc---ccchHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHH
Confidence                         0112221111             01   233456778889999999999999999999999888888


Q ss_pred             hccccccccceecccccchhhHHHHHHHHHhhhhhhhhhhcccccccCCCchHHHHHHHHHHHHHHHHHHHHHHH
Q 008231          360 TFMNRKIGSFTVPSGSLSAFLFITILLFTSLNEKVFVPLARKITHSIQGMTSLQRVGTGLIFSVIAMIVSAVIEQ  434 (573)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~i~~i~~~~~~~  434 (573)
                      ..++.+++++.+++.+++.++++..+++.|+++..+.+..+|...   ..+++.++.+|+++.++++++....+.
T Consensus       269 ~~m~~~l~g~~ip~~~lq~~n~L~IIil~Pi~~~~lyp~l~~~~~---~ls~l~k~~iG~~la~la~~va~~ve~  340 (654)
T TIGR00926       269 TRMDGDVGGFEIQPDQMQVVNPLLILIFVPIFDYIVYPAIAKCGT---RFTSLRKMAVGGLLAALSFFVAALVQL  340 (654)
T ss_pred             HHhcCccCCEecCHHHHHHHHHHHHHHhHHHHHHhHHHHHHhcCC---CCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence            777777777888999999999999999999998766666555432   367899999999999999998887643

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=99.92  E-value=6.4e-22  Score=208.36  Aligned_cols=172  Identities=15%  Similarity=0.070  Sum_probs=143.8

Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHH
Q 008231           31 GWLAAGLILGTELSERICAMGISMNLVTYLVGDLHLSSAKSATIVTNFMGTLNLLGLLGGFLADAKLGRYLTVAIFASVT  110 (573)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~  110 (573)
                      .+|..+.+....++..+......+.+| ++.+++|+|..+.+++.+.+.+...++.++.|+++||+ |||+++.++..+.
T Consensus         6 ~~~~l~~~~~~~~~~~~~~~~~~p~~~-~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~-grr~~~~~~~~~~   83 (394)
T PRK11652          6 NVNLLFMLVLLVAVGQMAQTIYVPAIA-DMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRV-GRRPVILVGMSIF   83 (394)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhccHH-HHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhc-CChHHHHHHHHHH
Confidence            456666666666666666655555554 45678999999999999999999999999999999998 9999999999999


Q ss_pred             HHHHHHHHhhccCCCCCCCCCccccccccccccchhhHHHHHHHHHHHHHhcCccccccccccccCCCCCCCchHHHhHH
Q 008231          111 ALVVGLLTSATSIPSMRPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKAMI  190 (573)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~  190 (573)
                      .++.+++.++.                          +.+.+++.|++.|++.+...+....+..|.+++++      ++
T Consensus        84 ~~~~~~~~~~~--------------------------~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~  131 (394)
T PRK11652         84 ILGTLVALFAH--------------------------SLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQ------LR  131 (394)
T ss_pred             HHHHHHHHHHc--------------------------cHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHH------HH
Confidence            99888887752                          56788999999999988877777788888888776      99


Q ss_pred             HHHHHHHHHHHhhhHHHHHHhhhhhcccchhHHHHHHHHHHHHHHH
Q 008231          191 FFFNRFYFAISIGSLFAVIVLVYVQDNVGRGWGYGISAGTMVVAAA  236 (573)
Q Consensus       191 ~~~~~~~~~~~ig~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~  236 (573)
                      ++.++++.+..+|..++|.+++++.+..||+++|++.++..++..+
T Consensus       132 ~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~~~~~~~~~  177 (394)
T PRK11652        132 HANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFLLLLGAGVTF  177 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999889999999987665544433

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=99.91  E-value=4.7e-22  Score=209.25  Aligned_cols=382  Identities=9%  Similarity=-0.026  Sum_probs=231.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hcCCCchhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHH
Q 008231           33 LAAGLILGTELSERICAMGISMNLVTYLVG-DLHLSSAKSATIVTNFMGTLNLLGLLGGFLADAKLGRYLTVAIFASVTA  111 (573)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~-~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~  111 (573)
                      |+++...+..+..... +.+.+.+.+.+.+ ++|+|.+|.+++.+++.+.+.++.++.|++.||+ |.|+++.++.++..
T Consensus        34 r~l~~s~~~f~~~F~~-w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~-G~R~v~~~~~ll~~  111 (462)
T PRK15034         34 RNLWISVSCLLLAFCV-WMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIF-GGRRWTVFSTAILI  111 (462)
T ss_pred             HHHHHHHHHHHHHHHH-HHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CChHHHHHHHHHHH
Confidence            5555554444444444 3444555556554 8999999999999999999999999999999999 99999999999999


Q ss_pred             HHHHHHHhhccCCCCCCCCCccccccccccccchhhHHHHHHHHHHHHHhcCccccccccccccCCCCCCCchHHHhHHH
Q 008231          112 LVVGLLTSATSIPSMRPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKAMIF  191 (573)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~  191 (573)
                      +.+++++++.+.+                     ..++..+++.|++.|++ +...+.....+++++|+++      ||+
T Consensus       112 i~~~~~~~a~~~~---------------------~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~------rG~  163 (462)
T PRK15034        112 IPCVWLGIAVQNP---------------------NTPFGIFIVIALLCGFA-GANFASSMGNISFFFPKAK------QGS  163 (462)
T ss_pred             HHHHHHHHHHccc---------------------CCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhH------hHH
Confidence            9998888751100                     02678999999999998 6677888999999999998      999


Q ss_pred             HHHHHHHHHHhhhHHHHHHhhhhh-----c-------------ccchhHHHHHHHHHHHHHHHHHHhcCccccccCCCCC
Q 008231          192 FFNRFYFAISIGSLFAVIVLVYVQ-----D-------------NVGRGWGYGISAGTMVVAAAILLIGTPWYRFKKPRGS  253 (573)
Q Consensus       192 ~~~~~~~~~~ig~~~~~~~~~~l~-----~-------------~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (573)
                      +.|+.....++|..+++++...+.     +             ..+|+.++++..+..+++.+..++..++.+.   ++.
T Consensus       164 A~Gi~~g~G~~G~~l~~~l~p~~i~~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~~~~~~~---~~~  240 (462)
T PRK15034        164 ALGINGGLGNLGVSVMQLVAPLVIFVPVFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSGMNDIAS---SRA  240 (462)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCCccc---ccc
Confidence            999997666777766655554322     2             2347776666655555554444443332111   010


Q ss_pred             chhHHHHHHHHHHhccCCCCCCCCCcchhcccccCCCCCccchhhhhhhhhhhhhhccccCCcccccchhhHHHHHHHHh
Q 008231          254 PLTVIWRVLLLAWKKRSHPYPDHPSLLNEYQNAKVPHTEKFKCLDKAAIIEDNAVANENKNNSWIVSTVTEVEEVKMVLK  333 (573)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  333 (573)
                      ..++..                                                               ...++.+..+.
T Consensus       241 ~~~~~~---------------------------------------------------------------~vlk~~~~Wll  257 (462)
T PRK15034        241 SIADQL---------------------------------------------------------------PVLQRLHLWLL  257 (462)
T ss_pred             CHHHHH---------------------------------------------------------------HHhCCCchhHH
Confidence            000000                                                               00011111111


Q ss_pred             HHHHHHHHHHHHHHhh-cccchhhhhhhccccccccceecccccchhhHHHHHHHHHhhhhhhhhhhcccccccCCCchH
Q 008231          334 LLPIWATCILFWTVYS-QMTTFTVEQATFMNRKIGSFTVPSGSLSAFLFITILLFTSLNEKVFVPLARKITHSIQGMTSL  412 (573)
Q Consensus       334 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~  412 (573)
                      .+ +.......|..+. .++.+....   .+      .........+..+...+..|+.+++.||+.+++.         
T Consensus       258 sl-ly~~tFG~fvg~s~~lp~~~~~~---~~------~~~~l~~~~l~~l~~~l~rplgG~LADRiG~~~v---------  318 (462)
T PRK15034        258 SL-LYLATFGSFIGFSAGFAMLAKTQ---FP------DVNILRLAFFGPFIGAIARSVGGAISDKFGGVRV---------  318 (462)
T ss_pred             HH-HHHHHHHHHHHHHHHHHHHHHHH---cC------hHHHHHHHHHHHHHHHHHHHhhHHHHHhcCchHH---------
Confidence            11 1122222222222 222222111   11      0011111233445566777888999887765532         


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCcccchhHHHHHHHHHHHHHHhhhhhhhheeecccCc------------
Q 008231          413 QRVGTGLIFSVIAMIVSAVIEQQRRETSVQKHIQISAFWLVPQYFLVGAGEAFVYVGQLEFFIREGPE------------  480 (573)
Q Consensus       413 ~~~~~g~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~lv~~~~l~g~~~~~~~~~~~~~~~~~~p~------------  480 (573)
                        +..+.+.+.++.........        .....+++.....++...++.++.+...+-++.+.+|+            
T Consensus       319 --l~~~~i~~~i~~~~~~l~lp--------~~~~~~~~~~~~~~~~l~~~~G~gngsvfk~ip~~f~~~~~~~~~~~~~~  388 (462)
T PRK15034        319 --TLINFIFMAIFSALLFLTLP--------GTGSGNFIAFYAVFMGLFLTAGLGSGSTFQMIAVIFRQITIYRVKMKGGS  388 (462)
T ss_pred             --HHHHHHHHHHHHHHHHHHhc--------cccccHHHHHHHHHHHHHHHhcccchHHHHhhHHHHhhhhhhcccccccc
Confidence              44444444444322222110        11122344444444444455555555666666666663            


Q ss_pred             ---------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCccccccccchhhHHHHHHHHHHHHHHHHHHHHHhh
Q 008231          481 ---------RMKSMSTGLFLSAISMGMFVSSMLVSIVDKITNKHWLRSNLNKGKLNNFYWLLAVLGLLNFMVFLFFAMK  550 (573)
Q Consensus       481 ---------~~rg~~~gi~~~~~~lg~~ig~~~~~~i~~~~~~~w~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~  550 (573)
                               +..|.+.|+......+|+++-|.+.+...+.+           +.+...|+.+.+..+++..+.+..+.|
T Consensus       389 ~~~~~~~~~~~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~-----------g~~~~~~~~~~~~~~~~~~~~w~~y~r  456 (462)
T PRK15034        389 DEQAQREAVTETAAALGFISAIGAVGGFFIPQAFGMSLNMT-----------GSPVGAMKVFLIFYIVCVLLTWLVYGR  456 (462)
T ss_pred             hhHHhhHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHc-----------CCcHHHHHHHHHHHHHHHHHHHHHhcc
Confidence                     25788899999999999999998888876543           334567888888999999888887654

>PRK15075 citrate-proton symporter; Provisional

Probab=99.91  E-value=7.5e-22  Score=210.63  Aligned_cols=174  Identities=12%  Similarity=0.009  Sum_probs=132.7

Q ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHH-HHHHHH-----HHHHHhHHHHHhhhccchhHHH
Q 008231           30 GGWLAAGLILGTELSERICAMGISMNLVTYLVGDLHLSSAKSATIV-TNFMGT-----LNLLGLLGGFLADAKLGRYLTV  103 (573)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~-~~~~~~-----~~~~~~~~G~laDr~~Grr~~~  103 (573)
                      .+++....+.++.+++.++...+ +++.+++.++++.+..+.+... +...+.     ..+++++.|+++||+ |||+++
T Consensus        12 ~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~-Grr~~l   89 (434)
T PRK15075         12 SKARAILRVTSGNFLEMFDFFLF-GFYATAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRV-GRRKGL   89 (434)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhh-chHHHH
Confidence            34556677777888888887554 5566688889999888765443 322222     235788999999999 999999


Q ss_pred             HHHHHHHHHHHHHHHhhccCCCCCCCCCccccccccccccchhhHHHHHHHHHHHHHhcCccccccccccccCCCCCCCc
Q 008231          104 AIFASVTALVVGLLTSATSIPSMRPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDP  183 (573)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~  183 (573)
                      +.+..++.++.++++++.+.....                  ......++++|+++|++.+...+....+++|++|+++ 
T Consensus        90 ~~~~~~~~~~~~l~~~~~~~~~~~------------------~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~-  150 (434)
T PRK15075         90 IVTLSIMASGTLLIAFVPGYATIG------------------LAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGR-  150 (434)
T ss_pred             HHHHHHHHHHHHHHHhCCcHHHHH------------------HHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCccc-
Confidence            999999999999999874322000                  0011257889999999999999988999999999998 


Q ss_pred             hHHHhHHHHHHHHHHHHHhhhHHHHHHhhhhh--------cccchhHHHHHHHH
Q 008231          184 KEEKAMIFFFNRFYFAISIGSLFAVIVLVYVQ--------DNVGRGWGYGISAG  229 (573)
Q Consensus       184 ~~~~~r~~~~~~~~~~~~ig~~~~~~~~~~l~--------~~~g~~~~f~~~~~  229 (573)
                           |+++.++...+.++|..+++.+++.+.        +.+|||++|++..+
T Consensus       151 -----rg~~~~~~~~~~~~g~~~g~~~g~~l~~~~~~~~~~~~gWr~~f~~~~~  199 (434)
T PRK15075        151 -----KGFYTSWQSASQQVAVVFAALLGYLLNQWLSPAQMAEWGWRIPFLIGCL  199 (434)
T ss_pred             -----chHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHH
Confidence                 999999998888888888887777652        46799999987543

>TIGR00898 2A0119 cation transport protein

Probab=99.91  E-value=2.6e-22  Score=218.46  Aligned_cols=384  Identities=14%  Similarity=0.077  Sum_probs=228.5

Q ss_pred             HHHhhhcCCC---chhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCccc
Q 008231           58 TYLVGDLHLS---SAKSATIVTNFMGTLNLLGLLGGFLADAKLGRYLTVAIFASVTALVVGLLTSATSIPSMRPPQCDDY  134 (573)
Q Consensus        58 ~yl~~~~~~s---~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (573)
                      +.+.+++|++   ..+.+++.+++.++..++.++.|+++||+ |||+++.++.++.+++.++++++.             
T Consensus       113 ~~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~-Grr~~~~~~~~~~~i~~~~~~~~~-------------  178 (505)
T TIGR00898       113 STIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRF-GRKKVLLLSTLVTAVSGVLTAFSP-------------  178 (505)
T ss_pred             ccEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhc-cchHHHHHHHHHHHHHHHHHHHcc-------------
Confidence            4567899999   89999999999999999999999999998 999999999999999988888763             


Q ss_pred             cccccccccchhhHHHHHHHHHHHHHhcCccccccccccccCCCCCCCchHHHhHHHHHHHHHHHHHhhhHHHHHHhhhh
Q 008231          135 RRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKAMIFFFNRFYFAISIGSLFAVIVLVYV  214 (573)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~~~~~l  214 (573)
                                   +++.+++.|++.|++.+...+...+++.|++|+++      |+++.++...+..+|.+++|.++..+
T Consensus       179 -------------~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~~~  239 (505)
T TIGR00898       179 -------------NYTVFLVFRLLVGMGIGGIWVQAVVLNTEFLPKKQ------RAIVGTLIQVFFSLGLVLLPLVAYFI  239 (505)
T ss_pred             -------------cHHHHHHHHHHHHhhccchHHHHHHHhheecChhh------hHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence                         67789999999999999999999999999999998      99999999999999999999887766


Q ss_pred             hcccchhHHHHHHHHHHHHHHHHHHhcCccccccCCCCCchhHHHHHHHHHHhccCCCCCCCCCcchhcccccCCCCCcc
Q 008231          215 QDNVGRGWGYGISAGTMVVAAAILLIGTPWYRFKKPRGSPLTVIWRVLLLAWKKRSHPYPDHPSLLNEYQNAKVPHTEKF  294 (573)
Q Consensus       215 ~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (573)
                      .+   ||+.|++.++..++..+..+ ..|+.++....+....+..+.+....+..+...++.   ....+.+....    
T Consensus       240 ~~---wr~~~~~~~i~~~~~~~~~~-~~~esp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~---~~~~~~~~~~~----  308 (505)
T TIGR00898       240 PD---WRWLQLAVSLPTFLFFLLSW-FVPESPRWLISQGRIEEALKILQRIAKINGKKLPAE---VLSLSLEKDLS----  308 (505)
T ss_pred             hH---HHHHHHHHHHHHHHHHHHHH-hcCCChHHHHHCCCHHHHHHHHHHHHHHcCCCCCHH---HHhhhhhhhhh----
Confidence            53   99999888776665555443 334322111111111222222222222211111100   00000000000    


Q ss_pred             chhhhhhhhhhhhhhccccCCcccccchhhHHHHHHHHh-HHHHHHHHHHHHHHhhcccchhhhhhhccccccccceecc
Q 008231          295 KCLDKAAIIEDNAVANENKNNSWIVSTVTEVEEVKMVLK-LLPIWATCILFWTVYSQMTTFTVEQATFMNRKIGSFTVPS  373 (573)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  373 (573)
                                    + .++...+     ....+.+.... .+..+.........+....    .   ..+ ..   ....
T Consensus       309 --------------~-~~~~~~~-----~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~---~~~-~~---~~~~  357 (505)
T TIGR00898       309 --------------S-SKKQYSF-----LDLFRTPNLRKTTLCLMMLWFTTAFSYYGLV----L---DLG-NL---GGNI  357 (505)
T ss_pred             --------------h-ccCCCcH-----HHHhCChHHHHHHHHHHHHHHHHHHHHHHHh----c---ccc-cc---CCCh
Confidence                          0 0000011     00011111111 1111110000000000000    0   000 00   0011


Q ss_pred             cccchhhHHHHHHHHHhhhhhhhhhhcccccccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCcccchhHHH
Q 008231          374 GSLSAFLFITILLFTSLNEKVFVPLARKITHSIQGMTSLQRVGTGLIFSVIAMIVSAVIEQQRRETSVQKHIQISAFWLV  453 (573)
Q Consensus       374 ~~~~~~~~~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~lv  453 (573)
                      .....+..+..+....+..++.+|+.||.           .+..+.++.+++++++....            ....++.+
T Consensus       358 ~~~~~~~~~~~i~~~~~~~~l~dr~grr~-----------~~~~~~~~~~~~~l~~~~~~------------~~~~~~~~  414 (505)
T TIGR00898       358 YLDLFISGLVELPAKLITLLLIDRLGRRY-----------TMAASLLLAGVALLLLLFVP------------VDLYFLRT  414 (505)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCHH-----------HHHHHHHHHHHHHHHHHHcC------------CCchHHHH
Confidence            11122333334444555566666555543           25556666666665554431            11122334


Q ss_pred             HHHHHHHHHHHhhhhhhhheeecccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCccccccccchhhHHHHHH
Q 008231          454 PQYFLVGAGEAFVYVGQLEFFIREGPERMKSMSTGLFLSAISMGMFVSSMLVSIVDKITNKHWLRSNLNKGKLNNFYWLL  533 (573)
Q Consensus       454 ~~~~l~g~~~~~~~~~~~~~~~~~~p~~~rg~~~gi~~~~~~lg~~ig~~~~~~i~~~~~~~w~~~~~~~~~~~~~~~~~  533 (573)
                      ...++.+++.....+..+.+..|.+|++.|+++.|+.++...+|++++|.+.+ ..+.             +....++++
T Consensus       415 ~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~p~i~~-~~~~-------------~~~~~~~~~  480 (505)
T TIGR00898       415 ALAVLGKFGITSAFQMVYLYTAELYPTVVRNLGVGVCSTMARVGSIISPFLVY-LGEK-------------WLFLPLVLF  480 (505)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcccccHHHHhhhHhHHHHHHHHHHHHHhHHHH-HHHH-------------HHhhHHHHH
Confidence            44455566666667888899999999999999999999999999999999988 4321             112345566


Q ss_pred             HHHHHHHHHHHHHHHhhcchh
Q 008231          534 AVLGLLNFMVFLFFAMKHQYN  554 (573)
Q Consensus       534 a~~~~l~~~~~~~~~~~~~~~  554 (573)
                      +++.++++++.+ +.++++++
T Consensus       481 ~~~~~~~~~~~~-~lpet~~~  500 (505)
T TIGR00898       481 GGLALLAGILTL-FLPETKGV  500 (505)
T ss_pred             HHHHHHHHHHHH-cCcCCCCC
Confidence            666666655443 44665544

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=99.91  E-value=2.1e-21  Score=205.70  Aligned_cols=152  Identities=16%  Similarity=0.069  Sum_probs=133.3

Q ss_pred             HHhhhcCCCchhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCccccccc
Q 008231           59 YLVGDLHLSSAKSATIVTNFMGTLNLLGLLGGFLADAKLGRYLTVAIFASVTALVVGLLTSATSIPSMRPPQCDDYRRKH  138 (573)
Q Consensus        59 yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (573)
                      .+.+++|.+..+.++..+++.+++.++++++|+++||+ |||+++..+..+++++..+++++.                 
T Consensus        41 ~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~-Grr~~l~~~~~~~~~~~~~~~~a~-----------------  102 (413)
T PRK15403         41 NVVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRI-GRRPVLITGALIFTLACAATLFTT-----------------  102 (413)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHc-CchHHHHHHHHHHHHHHHHHHHcC-----------------
Confidence            36789999999999999999999999999999999998 999999999999999998888763                 


Q ss_pred             cccccchhhHHHHHHHHHHHHHhcCccccccccccccCCCCCCCchHHHhHHHHHHHHHHHHHhhhHHHHHHhhhhhccc
Q 008231          139 HQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKAMIFFFNRFYFAISIGSLFAVIVLVYVQDNV  218 (573)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~~~~~l~~~~  218 (573)
                               +.+.++++|+++|++.+...+....++.|.+|+++      |++.+++.+.+.++|..+||.+++++.+..
T Consensus       103 ---------~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~  167 (413)
T PRK15403        103 ---------SMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTK------GIKLMAIITSIVLVAPIIGPLSGAALMHFV  167 (413)
T ss_pred             ---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence                     67789999999999988766667788899999888      999999999999999999999999999888


Q ss_pred             chhHHHHHHHHHHHHHHHHHHhcCc
Q 008231          219 GRGWGYGISAGTMVVAAAILLIGTP  243 (573)
Q Consensus       219 g~~~~f~~~~~~~~~~~~~~~~~~~  243 (573)
                      |||+.|++.++..+++.+..++..|
T Consensus       168 gw~~~f~~~~~~~~i~~~~~~~~lp  192 (413)
T PRK15403        168 HWKVLFAIIAVMGLIAFVGLLLAMP  192 (413)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            9999999887766665554444334

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=99.91  E-value=1.2e-21  Score=206.25  Aligned_cols=164  Identities=12%  Similarity=0.076  Sum_probs=136.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHH
Q 008231           34 AAGLILGTELSERICAMGISMNLVTYLVGDLHLSSAKSATIVTNFMGTLNLLGLLGGFLADAKLGRYLTVAIFASVTALV  113 (573)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~  113 (573)
                      ..+.+..+.++..++.......++.. .+++|.+..+.+++.+.+.+.+.++.+++|+++||+ |||++++++..+.+++
T Consensus         4 ~f~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~-grr~vl~~~~~~~~~~   81 (393)
T PRK11195          4 GFYAIMAAQFFSALADNALLFAAIAL-LKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSF-PKGRVMFIANGIKLLG   81 (393)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHH-HHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhcc-CCchhhHHHHHHHHHH
Confidence            45666777777777655554445544 678999999999999999999999999999999999 9999999999999888


Q ss_pred             HHHHHhhccCCCCCCCCCccccccccccccchhhHHHHHHHHHHHHHhcCccccccccccccCCCCCCCchHHHhHHHHH
Q 008231          114 VGLLTSATSIPSMRPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKAMIFFF  193 (573)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  193 (573)
                      .+++.++.                          +   .++.|+++|++.++..|...+++.|++|+++      |+++.
T Consensus        82 ~~~~~~~~--------------------------~---~~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~------~~~a~  126 (393)
T PRK11195         82 CLLMLFGI--------------------------H---PLLAYGLVGIGAAAYSPAKYGILTELLPGEK------LVKAN  126 (393)
T ss_pred             HHHHHHHH--------------------------H---HHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH------HHHHH
Confidence            87776642                          2   2678999999999999999999999999888      99999


Q ss_pred             HHHHHHHHhhhHHHHHHhhhhhcccchhHHHHHHHHHHHHHH
Q 008231          194 NRFYFAISIGSLFAVIVLVYVQDNVGRGWGYGISAGTMVVAA  235 (573)
Q Consensus       194 ~~~~~~~~ig~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~  235 (573)
                      ++.+...++|..+||.++|++.+. .|+.++.+.+...+++.
T Consensus       127 ~~~~~~~~~~~~~Gp~lgG~l~~~-~~~~~~~i~~~~~~~~~  167 (393)
T PRK11195        127 GWMEGSTIAAILLGTVLGGALADP-HAEAALAVCALIYLLAA  167 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence            999999999999999999999874 47777766555444443

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.91  E-value=3.6e-22  Score=213.33  Aligned_cols=159  Identities=11%  Similarity=0.018  Sum_probs=130.3

Q ss_pred             HHHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCccc
Q 008231           55 NLVTYLVGDLHLSSAKSATIVTNFMGTLNLLGLLGGFLADAKLGRYLTVAIFASVTALVVGLLTSATSIPSMRPPQCDDY  134 (573)
Q Consensus        55 ~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (573)
                      ...+++++ +|+|..+.+++.+.+.++..++.++.|+++||+ |||+.+.++.++.+++..++++..+..          
T Consensus        48 ~~~p~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-g~~~~~~~~~~~~~~~~~~~~~~~~~~----------  115 (438)
T TIGR00712        48 LAMPYLVE-QGFSKGELGFALSAISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILSAAVMLLMGFVPWAT----------  115 (438)
T ss_pred             hhhHHHHH-cCCCHhHhHHHHHHHHHHHHHhhhccchhhhcc-CCceehHHHHHHHHHHHHHHhcccccc----------
Confidence            34456665 599999999999999999999999999999998 999999999988888887776542111          


Q ss_pred             cccccccccchhhHHHHHHHHHHHHHhcCccccccccccccCCCCCCCchHHHhHHHHHHHHHHHHHhhhHHHHHHhhhh
Q 008231          135 RRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKAMIFFFNRFYFAISIGSLFAVIVLVYV  214 (573)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~~~~~l  214 (573)
                                  .+...+++.|++.|++.+...+.....+.|++|+++      |++++++++.+.++|+.+++.+.+.+
T Consensus       116 ------------~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~------rg~~~~~~~~~~~~g~~~~~~l~~~~  177 (438)
T TIGR00712       116 ------------SSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSE------RGTIVSIWNCAHNIGGGIPPLLVLLG  177 (438)
T ss_pred             ------------chHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCccc------chhHHHHHHHHHHhHhHHHHHHHHHH
Confidence                        246677888999999999988888899999999998      99999999999999999998887764


Q ss_pred             h-cccchhHHHHHHHHHHHHHHHHHHhcCc
Q 008231          215 Q-DNVGRGWGYGISAGTMVVAAAILLIGTP  243 (573)
Q Consensus       215 ~-~~~g~~~~f~~~~~~~~~~~~~~~~~~~  243 (573)
                      . +..|||++|++.++..++..+..++..+
T Consensus       178 ~~~~~~w~~~f~~~~~~~~i~~~~~~~~~~  207 (438)
T TIGR00712       178 MAWFNDWHAALYFPAICAIIVALFAFAMMR  207 (438)
T ss_pred             HHHhhhhHHHHHHHHHHHHHHHHHHHHhcc
Confidence            4 4468999999877766665444444334

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.91  E-value=2.6e-22  Score=213.26  Aligned_cols=392  Identities=13%  Similarity=0.033  Sum_probs=227.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHH
Q 008231           33 LAAGLILGTELSERICAMGISMNLVTYLVGDLHLSSAKSATIVTNFMGTLNLLGLLGGFLADAKLGRYLTVAIFASVTAL  112 (573)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~  112 (573)
                      +..|.+....++...+++.+.++++.|+++++|+|..+.|.+.+.+.+...++++++|+++||+ |||+++.++..+.++
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~-g~r~~~~~~~~~~~~   88 (420)
T PRK09528         10 PNYWIFSLFFFFFFFIWSSWFSFFPIWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDKL-GLKKHLLWIISGLLV   88 (420)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHH
Confidence            4566667777777788888899999999999999999999999999999999999999999998 999999887666555


Q ss_pred             HHHHHHhhccCCCCCCCCCccccccccccccchhhHHH-HHHHHHHHHHhcCccccccccccccCCCCCCCchHHHhHHH
Q 008231          113 VVGLLTSATSIPSMRPPQCDDYRRKHHQCIEANGKQLA-MLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKAMIF  191 (573)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~  191 (573)
                      +......... .                      .... ....+..+.++..+...+.....+.++.++..    ..+++
T Consensus        89 ~~~~~~~~~~-~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~g~  141 (420)
T PRK09528         89 LFGPFFIYVF-A----------------------PLLQYNILLGAIVGGIYLGFGFLAGAGAIEAYIERVS----RRSGF  141 (420)
T ss_pred             HHHHHHHHHH-H----------------------HHHHHHHHHHHHHHHHHhhhhhccchhhhhhHHHHHH----hhccc
Confidence            4432211000 0                      0000 11112222233223222222233333332111    11677


Q ss_pred             HHHHHHHHHHhhhHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHHHHhcCccccccCCCCCchhHHHHHHHHHHhccCC
Q 008231          192 FFNRFYFAISIGSLFAVIVLVYVQDNVGRGWGYGISAGTMVVAAAILLIGTPWYRFKKPRGSPLTVIWRVLLLAWKKRSH  271 (573)
Q Consensus       192 ~~~~~~~~~~ig~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (573)
                      .++..+...++|..++|.+++++.+ .+|+++|++.++..++..+.+++..++.++++. .+.                .
T Consensus       142 ~~g~~~~~~~~g~~i~~~~~g~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~----------------~  203 (420)
T PRK09528        142 EYGRARMWGSLGWALCAFIAGILFN-INPQINFWLGSGSALILLVLLFFAKPDAPSTAK-VAN----------------A  203 (420)
T ss_pred             cchhhHHhhhHHHHHHHHHHHHHHh-cCchHhHHHHHHHHHHHHHHHhcccccccchhh-hcc----------------c
Confidence            8888888899999999999999876 589999988777666555544443332111100 000                0


Q ss_pred             CCCCCCCcchhcccccCCCCCccchhhhhhhhhhhhhhccccCCcccccchhhHHHHHHHHhHHH-HHHHHHHHHHHhhc
Q 008231          272 PYPDHPSLLNEYQNAKVPHTEKFKCLDKAAIIEDNAVANENKNNSWIVSTVTEVEEVKMVLKLLP-IWATCILFWTVYSQ  350 (573)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~  350 (573)
                      +.++               ++... .+..                      ....+++....... .......+.....+
T Consensus       204 ~~~~---------------~~~~~-~~~~----------------------~~~l~~~~~~~l~l~~~~~~~~~~~~~~~  245 (420)
T PRK09528        204 LGAN---------------ASAVS-LKDA----------------------LALLKLPKFWFLVLYVIGVACFYDVFDQQ  245 (420)
T ss_pred             hhcc---------------ccccc-HHHH----------------------HHHccCCCeEeehHHHHHHHHHHHHHHHH
Confidence            0000               00000 0000                      00000111111111 11111112222222


Q ss_pred             ccchhhhhhhccccccccceecccccchhhHHHHHHHHHhhhhhhhhhhcccccccCCCchHHHHHHHHHHHHHHHHHHH
Q 008231          351 MTTFTVEQATFMNRKIGSFTVPSGSLSAFLFITILLFTSLNEKVFVPLARKITHSIQGMTSLQRVGTGLIFSVIAMIVSA  430 (573)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~i~~i~~~  430 (573)
                      .+.++.........+    ....+.+.++..+...+..+..+++.||+.+|+.           +..+.++.+++++++.
T Consensus       246 ~~~~~~~~~~~~~~~----~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~-----------~~~~~~l~~~~~~l~~  310 (420)
T PRK09528        246 FPNFFASFFATPEQG----TRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNA-----------LLLAGTIMAVRIIGSG  310 (420)
T ss_pred             HHHHHHHHHhccCcc----hHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchh-----------hHHHHHHHHHHHHHHH
Confidence            232222111000000    0112344455555566667777888766655421           5556666666666555


Q ss_pred             HHHHHHHhhcccCCcccchhHHHHHHHHHHHHHHhhhhhhhheeecccCchhHHHHHHH-HHHHHHHHHHHHHHHHHHHh
Q 008231          431 VIEQQRRETSVQKHIQISAFWLVPQYFLVGAGEAFVYVGQLEFFIREGPERMKSMSTGL-FLSAISMGMFVSSMLVSIVD  509 (573)
Q Consensus       431 ~~~~~~~~~~~~~~~~~~~~~lv~~~~l~g~~~~~~~~~~~~~~~~~~p~~~rg~~~gi-~~~~~~lg~~ig~~~~~~i~  509 (573)
                      +..              +.++++...++.+++.....+....++.+..|++.+++..+. +++...+|+++++.+.|++.
T Consensus       311 ~~~--------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~  376 (420)
T PRK09528        311 FAT--------------GPLEVSILKLLHAFEVPFLLVGVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLY  376 (420)
T ss_pred             hcc--------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHH
Confidence            431              344556667778888777777778899999999999988766 67778899999999999988


Q ss_pred             hhhccCccccccccchhhHHHHHHHHHHHHHHHHHHHHHh
Q 008231          510 KITNKHWLRSNLNKGKLNNFYWLLAVLGLLNFMVFLFFAM  549 (573)
Q Consensus       510 ~~~~~~w~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~  549 (573)
                      +..  |          +...|.+.+++.++..++.++..+
T Consensus       377 ~~~--G----------~~~~f~~~~~~~~i~~~~~~~~~~  404 (420)
T PRK09528        377 DSI--G----------FQGTYLILGGIVLLFTLISVFTLS  404 (420)
T ss_pred             Hhh--C----------chHHHHHHHHHHHHHHHHHHHHhc
Confidence            643  1          245666677776666655555444

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.90  E-value=2.8e-22  Score=208.63  Aligned_cols=157  Identities=14%  Similarity=0.122  Sum_probs=136.3

Q ss_pred             HHHHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCcc
Q 008231           54 MNLVTYLVGDLHLSSAKSATIVTNFMGTLNLLGLLGGFLADAKLGRYLTVAIFASVTALVVGLLTSATSIPSMRPPQCDD  133 (573)
Q Consensus        54 ~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (573)
                      ....+++.+++|+|..+.+++.+.+.++..++.++.|+++||+ |||+++.++.++.+++.++++++.            
T Consensus        15 ~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~~~~~------------   81 (379)
T TIGR00881        15 ALAMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRS-NPRVFLPIGLILCAIVNLFFGFST------------   81 (379)
T ss_pred             hhhhHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhh-CCeehhHHHHHHHHHHHHHHHHhh------------
Confidence            3445678889999999999999999999999999999999998 999999999999999999888863            


Q ss_pred             ccccccccccchhhHHHHHHHHHHHHHhcCccccccccccccCCCCCCCchHHHhHHHHHHHHHHHHHhhhHHHH-HHhh
Q 008231          134 YRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKAMIFFFNRFYFAISIGSLFAV-IVLV  212 (573)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~-~~~~  212 (573)
                                    +.+.+++.|++.|++.+...+...+++.|++|+++      |++++++.+.+.++|..++| ++++
T Consensus        82 --------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~~  141 (379)
T TIGR00881        82 --------------SLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSE------RGTWVSFWNCSHNVGGGLLPPLVLF  141 (379)
T ss_pred             --------------hHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhh------heeeEeehhccchhHHHHHHHHHHH
Confidence                          57789999999999999999999999999999888      99999999999999999999 5777


Q ss_pred             hhhcccchhHHHHHHHHHHHHHHHHHHhcCc
Q 008231          213 YVQDNVGRGWGYGISAGTMVVAAAILLIGTP  243 (573)
Q Consensus       213 ~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~  243 (573)
                      .+.+..+|++.|++.++..++..+..++..+
T Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (379)
T TIGR00881       142 GIAELYSWHWVFIVPGIIAIIVSLICFLLLR  172 (379)
T ss_pred             HHHhcCCchhHHHHHHHHHHHHHHHHheeeC
Confidence            7777889999998877665554444443333

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=99.90  E-value=2.5e-21  Score=194.85  Aligned_cols=388  Identities=15%  Similarity=0.058  Sum_probs=265.4

Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHH
Q 008231           31 GWLAAGLILGTELSERICAMGISMNLVTYLVGDLHLSSAKSATIVTNFMGTLNLLGLLGGFLADAKLGRYLTVAIFASVT  110 (573)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~  110 (573)
                      +.|+++.. +..+.-.+..+.+.+.+.+++.+++|+|+.|.+++.++..+.+.+..++-|.+.||+ |.|++..++.++.
T Consensus        12 ~~~~L~~S-~~af~v~F~VW~l~s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drf-GgR~~~~~s~~l~   89 (417)
T COG2223          12 ARRNLWLS-TLAFDVGFMVWTLFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRF-GGRKWTILSMLLL   89 (417)
T ss_pred             hhHHHHHH-HHHHHHHHHHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhccc-CchHHHHHHHHHH
Confidence            44455444 444444555567778888999999999999999999999999999999999999999 9999999999999


Q ss_pred             HHHHHHHHhhccCCCCCCCCCccccccccccccchhhHHHHHHHHHHHHHhcCccccccccccccCCCCCCCchHHHhHH
Q 008231          111 ALVVGLLTSATSIPSMRPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKAMI  190 (573)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~  190 (573)
                      .+-.+..+++.+.+                       +.+.+++.+++.|++.+-+ +...+++++++|+++      +|
T Consensus        90 ~IP~~~~~~a~~~~-----------------------~~~~ll~~gll~G~~GasF-av~m~~~s~~fP~~~------qG  139 (417)
T COG2223          90 LIPCLGLAFAVTYP-----------------------STWQLLVIGLLLGLAGASF-AVGMPNASFFFPKEK------QG  139 (417)
T ss_pred             HHHHHHHHHHccCC-----------------------chHHHHHHHHHHhccccee-hcccccccccCChhh------hh
Confidence            99999999987655                       4478999999999987776 567789999999999      99


Q ss_pred             HHHHHHHHHHHhhhHHHHHHhhhhhcccc---hhHHHHHHHHHHHHHHHHHHhcCccccccCCCCCchhHHHHHHHHHHh
Q 008231          191 FFFNRFYFAISIGSLFAVIVLVYVQDNVG---RGWGYGISAGTMVVAAAILLIGTPWYRFKKPRGSPLTVIWRVLLLAWK  267 (573)
Q Consensus       191 ~~~~~~~~~~~ig~~~~~~~~~~l~~~~g---~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (573)
                      .+.|++. +.|+|..+...++.++....|   |+.+..+..+.++++.+..++..++.+.+++..++...          
T Consensus       140 ~AlGI~g-~GN~G~av~q~~~P~v~~~~g~~~w~~~~~i~~~~l~v~~v~~~~~~~d~p~~r~~~~~~~~----------  208 (417)
T COG2223         140 LALGIAG-AGNLGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVALAIAAVLAWLGMNDVPEHRASVKPQLP----------  208 (417)
T ss_pred             HHHHHhc-cccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhccccccch----------
Confidence            9999999 999999999999999999888   99888877777777666555544433222111111000          


Q ss_pred             ccCCCCCCCCCcchhcccccCCCCCccchhhhhhhhhhhhhhccccCCcccccchhhHHHHHHHHhHHHHHHHHHHHHHH
Q 008231          268 KRSHPYPDHPSLLNEYQNAKVPHTEKFKCLDKAAIIEDNAVANENKNNSWIVSTVTEVEEVKMVLKLLPIWATCILFWTV  347 (573)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  347 (573)
                                                    +                      ..+.+...+....+..++..+...+..
T Consensus       209 ------------------------------~----------------------~~~~v~~~~~~W~lsllY~~tFG~Fvg  236 (417)
T COG2223         209 ------------------------------A----------------------QLKAVFSNKDTWLLSLLYFATFGGFVG  236 (417)
T ss_pred             ------------------------------h----------------------HHHHHhcCcchHHHHHHHHHHHHHHHH
Confidence                                          0                      001111111112222233333333333


Q ss_pred             hh-cccchhhhhhhccccccccceecccccchhhHHHHHHHHHhhhhhhhhhhcccccccCCCchHHHHHHHHHHHHHHH
Q 008231          348 YS-QMTTFTVEQATFMNRKIGSFTVPSGSLSAFLFITILLFTSLNEKVFVPLARKITHSIQGMTSLQRVGTGLIFSVIAM  426 (573)
Q Consensus       348 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~i~~  426 (573)
                      +. +.+.++..+. ..+      ....+.+.+..++...+.-|+.+++.||++.++.           +......+.++.
T Consensus       237 fs~~l~~~~~~~f-g~~------~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv-----------~~~~f~~~~~~~  298 (417)
T COG2223         237 FSAYLPMYLVTQF-GLS------PVTAGLIAFLFPLIGALARPLGGWLSDRIGGRRV-----------TLAVFVGMALAA  298 (417)
T ss_pred             HHHHHHHHHHHhc-CCC------hhhHHHHHHHHHHHHHHHHhccchhhhhccchhH-----------HHHHHHHHHHHH
Confidence            32 2222332221 111      2334456666667777778888999888766643           344444455555


Q ss_pred             HHHHHHHHHHHhhcccCCcccchhHHHHHHHHHHHHHHhhhhhhhheeecccCchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 008231          427 IVSAVIEQQRRETSVQKHIQISAFWLVPQYFLVGAGEAFVYVGQLEFFIREGPERMKSMSTGLFLSAISMGMFVSSMLVS  506 (573)
Q Consensus       427 i~~~~~~~~~~~~~~~~~~~~~~~~lv~~~~l~g~~~~~~~~~~~~~~~~~~p~~~rg~~~gi~~~~~~lg~~ig~~~~~  506 (573)
                      .+..+....       ..+..+.+..+..++..++..+..+...+-.+...+|+ +.|...|+......+|++.-|...+
T Consensus       299 ~~l~~~~~~-------~~~~~~~~~~~~~~l~l~~~~G~GnGsvfk~Ip~if~~-~~G~v~G~vga~G~lGGf~lp~~~g  370 (417)
T COG2223         299 ALLSLFLTG-------FGHGGSFVVFVAVFLALFVFAGLGNGSVFKMIPVIFPK-ETGAVTGIVGAIGGLGGFFLPLAFG  370 (417)
T ss_pred             HHHHccccc-------cccCcchHHHHHHHHHHHHHhccCcchheeechHHHHh-hhhHHHHHHHHhccccccchhHHHH
Confidence            444443100       11123444444445555666666666777777777765 5888999999999999999999999


Q ss_pred             HHhhhhccCccccccccchhhHHHHHHHHHHHHHHHHHHHHHhh
Q 008231          507 IVDKITNKHWLRSNLNKGKLNNFYWLLAVLGLLNFMVFLFFAMK  550 (573)
Q Consensus       507 ~i~~~~~~~w~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~  550 (573)
                      ...+.+           +.....|+++..+.+++.+.++..+.|
T Consensus       371 ~~~~~t-----------g~~~~~f~~~~~~~~~a~v~~~~~y~r  403 (417)
T COG2223         371 VSLDLT-----------GSYTGAFMLLLAFYLVALVLTWALYAR  403 (417)
T ss_pred             HHHHhc-----------ccHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            888765           345678888898888888888776654

>PRK11043 putative transporter; Provisional

Probab=99.90  E-value=4.5e-21  Score=202.42  Aligned_cols=160  Identities=16%  Similarity=0.126  Sum_probs=134.4

Q ss_pred             HHHHHHHHHHHH--HhhhcCCCchhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHhhccCCC
Q 008231           48 CAMGISMNLVTY--LVGDLHLSSAKSATIVTNFMGTLNLLGLLGGFLADAKLGRYLTVAIFASVTALVVGLLTSATSIPS  125 (573)
Q Consensus        48 ~~~~~~~~l~~y--l~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~  125 (573)
                      .+.+...++|.+  +.+++|+|..+.+++.+.+.++..++.+++|+++||+ |||+++..+..+..++..++.++.    
T Consensus        18 ~~~~~~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~~~~~----   92 (401)
T PRK11043         18 GFLATDMYLPAFKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRY-GRKPVLLAGLSLFALGSLGMLWVE----   92 (401)
T ss_pred             HHHHHHHHHhhHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhc-CCcHHHHHHHHHHHHHHHHHHHhc----
Confidence            333333444433  6789999999999999999999999999999999998 999999999999888888887753    


Q ss_pred             CCCCCCccccccccccccchhhHHHHHHHHHHHHHhcCccccccccccccCCCCCCCchHHHhHHHHHHHHHHHHHhhhH
Q 008231          126 MRPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKAMIFFFNRFYFAISIGSL  205 (573)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~  205 (573)
                                            +.+.+++.|++.|++.+...+...+++.|++|+++      +++.++..+...++|..
T Consensus        93 ----------------------~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~  144 (401)
T PRK11043         93 ----------------------SAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQK------ANRVFATIMPLVALSPA  144 (401)
T ss_pred             ----------------------CHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHH------HHHHHHHHHHHHHHHHH
Confidence                                  56788999999999988877777889999999887      88899998888999999


Q ss_pred             HHHHHhhhhhcccchhHHHHHHHHHHHHHHHHHHh
Q 008231          206 FAVIVLVYVQDNVGRGWGYGISAGTMVVAAAILLI  240 (573)
Q Consensus       206 ~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~  240 (573)
                      ++|.+++++.+.+||++.|++..+..++..+..+.
T Consensus       145 ~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~  179 (401)
T PRK11043        145 LAPLLGAWLLNHFGWQAIFATLFAITLLLILPTLR  179 (401)
T ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999998877666555444333

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.90  E-value=5.5e-22  Score=210.03  Aligned_cols=376  Identities=16%  Similarity=0.191  Sum_probs=247.9

Q ss_pred             hcCCCchhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCccccccccccc
Q 008231           63 DLHLSSAKSATIVTNFMGTLNLLGLLGGFLADAKLGRYLTVAIFASVTALVVGLLTSATSIPSMRPPQCDDYRRKHHQCI  142 (573)
Q Consensus        63 ~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  142 (573)
                      +++++..|.+++.+.+..++.++++++|+++||+ |-|+++.++.++.++++++..++..                    
T Consensus        67 ~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~-G~r~v~~~~~~~sa~~t~l~P~aa~--------------------  125 (466)
T KOG2532|consen   67 EYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKF-GARRVFFISGLISALLTLLTPLAAS--------------------  125 (466)
T ss_pred             eecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHc-CchHHHHHHHHHHHHHHHHHHHHHH--------------------
Confidence            6889999999999999999999999999999999 9999999999999999999998754                    


Q ss_pred             cchhhHHHHHHHHHHHHHhcCccccccccccccCCCCCCCchHHHhHHHHHHHHHHHHHhhhHHHHHHhhhhhcc-cchh
Q 008231          143 EANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKAMIFFFNRFYFAISIGSLFAVIVLVYVQDN-VGRG  221 (573)
Q Consensus       143 ~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~~~~~l~~~-~g~~  221 (573)
                          .+.+.+++.|+++|++.|...|+...+.+.|.|++|      |++..++.+.+..+|.+++.+++|++.+. +||+
T Consensus       126 ----~~~~~~~~~R~lqGl~~g~~~pa~~~i~~~W~P~~E------rs~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~  195 (466)
T KOG2532|consen  126 ----IGFYLLLVLRFLQGLGQGVLFPAIGSILAKWAPPNE------RSTFIAILTAGSQLGTIITMPVSGLLCESSLGWP  195 (466)
T ss_pred             ----hcchhhHHHHHHhHHHHhHHHhhhhceeeeECCHHH------HHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCc
Confidence                234577999999999999999999999999999999      99999999999999999999999999998 9999


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCccccccCCCCCchhHHHHHHHHHHhccCCCCCCCCCcchhcccccCCCCCccchhhhhh
Q 008231          222 WGYGISAGTMVVAAAILLIGTPWYRFKKPRGSPLTVIWRVLLLAWKKRSHPYPDHPSLLNEYQNAKVPHTEKFKCLDKAA  301 (573)
Q Consensus       222 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (573)
                      ++|++.++..++-.+++++...+.+.+++.-+.                       +++...++.+.+...+        
T Consensus       196 sifY~~g~~g~i~~~~w~~~~~d~P~~h~~is~-----------------------~El~~I~~~k~~~~~~--------  244 (466)
T KOG2532|consen  196 SIFYVFGIVGLIWFILWFLFYSDSPSKHPNISE-----------------------KELKYIEKGKSEAHVK--------  244 (466)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCH-----------------------HHHHHHHhcccccccC--------
Confidence            999998887766665555444433222221110                       0000000000000000        


Q ss_pred             hhhhhhhhccccCCcccccchhhHHHHHHHHhHHHHHHHHHHHHHHhhcccchhhhhhhccccccccceecccccchhhH
Q 008231          302 IIEDNAVANENKNNSWIVSTVTEVEEVKMVLKLLPIWATCILFWTVYSQMTTFTVEQATFMNRKIGSFTVPSGSLSAFLF  381 (573)
Q Consensus       302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  381 (573)
                               .+...||+..    .++.......+..+.-...++...++.++++.. ..+++..      .++++.+++.
T Consensus       245 ---------~~~~vP~~~i----~ts~~vwai~~~~f~~~~~~~~l~~y~PtY~~~-VL~f~v~------~~G~~salP~  304 (466)
T KOG2532|consen  245 ---------KKPPVPYKAI----LTSPPVWAIWISAFGGNWGFYLLLTYLPTYLKE-VLGFDVR------ETGFLSALPF  304 (466)
T ss_pred             ---------CCCCCCHHHH----HcCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH-HhCCChh------hhhHHHHHHH
Confidence                     0013455211    011111222223333344444444445544432 2233322      4677888888


Q ss_pred             HHHHHHHHhhhhhhhhhhcccccccCCCchHHHHHHHHHHHHHH--HHHHHHHHHHHHhhcccCCcccchhHHHHHHHHH
Q 008231          382 ITILLFTSLNEKVFVPLARKITHSIQGMTSLQRVGTGLIFSVIA--MIVSAVIEQQRRETSVQKHIQISAFWLVPQYFLV  459 (573)
Q Consensus       382 ~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~i~--~i~~~~~~~~~~~~~~~~~~~~~~~~lv~~~~l~  459 (573)
                      +...+...+.+++.|++.+| ..+   .+..+++.-.....+.+  ++.+++..          ..+ . + ........
T Consensus       305 l~~~~~k~~~g~lsD~l~~~-~ls---~t~~rkifn~i~~~~~ai~l~~l~~~~----------~~~-~-~-~a~~~l~~  367 (466)
T KOG2532|consen  305 LAMAIVKFVAGQLSDRLTFR-ILS---ETTVRKIFNTIAFGGPAVFLLVLAFTS----------DEH-R-L-LAVILLTI  367 (466)
T ss_pred             HHHHHHHHHHHHHHHHHhhc-cCc---hHhHHHHHHhHHHHHHHHHHHeeeecC----------CCc-c-h-HHHHHHHH
Confidence            88888888888888887766 321   34455555444444444  44444331          111 1 1 12222222


Q ss_pred             HHHHHhhh-hhhhheeecccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hccCccccccccchhhHHHHHHHHHH
Q 008231          460 GAGEAFVY-VGQLEFFIREGPERMKSMSTGLFLSAISMGMFVSSMLVSIVDKI-TNKHWLRSNLNKGKLNNFYWLLAVLG  537 (573)
Q Consensus       460 g~~~~~~~-~~~~~~~~~~~p~~~rg~~~gi~~~~~~lg~~ig~~~~~~i~~~-~~~~w~~~~~~~~~~~~~~~~~a~~~  537 (573)
                      +.+..... +..+.-..+.+| +..+..+|+.+....+.++++|.+++.+.+. +..+|          ..+|++.+++.
T Consensus       368 ~~~~~g~~~~Gf~~~~~~~ap-q~a~~l~g~~~~~~~~~~~~~P~~vg~~~~~~t~~eW----------~~VF~i~a~i~  436 (466)
T KOG2532|consen  368 AIGLSGFNISGFYKNHQDIAP-QHAGFVMGIINFVGALAGFIAPLLVGIIVTDNTREEW----------RIVFLIAAGIL  436 (466)
T ss_pred             HHHHcccchhhhHhhhhhccc-hHHHHHHHHHHHHHHHHHHHHHHheeeEeCCCCHHHH----------HHHHHHHHHHH
Confidence            22333333 333333333355 6699999999999999999999999988741 11344          46788888888


Q ss_pred             HHHHHHHHHHH
Q 008231          538 LLNFMVFLFFA  548 (573)
Q Consensus       538 ~l~~~~~~~~~  548 (573)
                      +++.+++.++.
T Consensus       437 ~~~~i~f~~f~  447 (466)
T KOG2532|consen  437 IVGNIIFLFFG  447 (466)
T ss_pred             HHhchheeEee
Confidence            88887776664

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.90  E-value=8.4e-21  Score=199.10  Aligned_cols=364  Identities=9%  Similarity=0.028  Sum_probs=226.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHH-HHHHH
Q 008231           36 GLILGTELSERICAMGISMNLVTYLVGDLHLSSAKSATIVTNFMGTLNLLGLLGGFLADAKLGRYLTVAIFASV-TALVV  114 (573)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~-~~~~~  114 (573)
                      +.+....+....++-...+++|.|++ ++|+|..+.+++.+.+.+...+++++.|+++||+ ||++.......+ ..+..
T Consensus         7 ~~l~~~~~~~~~~~~~~~p~l~~~l~-~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~-~~~~~~~~~~~~~~~l~~   84 (382)
T TIGR00902         7 RWLALGFFGYFCAYGIFLPFFPAWLK-GIGLGEEMIGLLIGAALIARFAGGLFFAPLIKDA-NHIIIALRLLALASAIFA   84 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHHHHH
Confidence            44555556666666667788888885 7899999999999999999999999999999998 885433222111 11111


Q ss_pred             H-HHHhhccCCCCCCCCCccccccccccccchhhHHHHHHHHHHHHHhcCccccccccccccCCCCCCCchHHHhHHHHH
Q 008231          115 G-LLTSATSIPSMRPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKAMIFFF  193 (573)
Q Consensus       115 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  193 (573)
                      + ++..+                          ++++.+++.|.+++.+.+...|...++..+.  +++      |++.+
T Consensus        85 ~~~~~~~--------------------------~~~~~l~~~~~l~~~~~~~~~p~~~al~~~~--~~~------~~~~~  130 (382)
T TIGR00902        85 AAFSAGA--------------------------HNAWLLFIAIGLFALFFSAGMPIGDALANTW--QKQ------FGLDY  130 (382)
T ss_pred             HHHHHhh--------------------------hhHHHHHHHHHHHHHHHccchhHHHHHHHHH--HHH------cCCCc
Confidence            1 22222                          3677888999999998888888887776543  344      88999


Q ss_pred             HHHHHHHHhhhHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHHHHhcCccccccCCCCCchhHHHHHHHHHHhccCCCC
Q 008231          194 NRFYFAISIGSLFAVIVLVYVQDNVGRGWGYGISAGTMVVAAAILLIGTPWYRFKKPRGSPLTVIWRVLLLAWKKRSHPY  273 (573)
Q Consensus       194 ~~~~~~~~ig~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (573)
                      +..+...++|.+++|.+++++.+.+|||..|++..+..++.. ......++.+++++ +++                   
T Consensus       131 g~~~~~~slG~~~g~~l~g~l~~~~g~~~~f~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~-------------------  189 (382)
T TIGR00902       131 GKVRLIGSAAFIIGSALFGGLIGMFDEQNILAILTAGLAFML-IGFLIKPTIPPKDA-IPE-------------------  189 (382)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHH-HHHHcCCCCCCCcc-ccc-------------------
Confidence            999999999999999999999999999999887654432222 22222221110000 000                   


Q ss_pred             CCCCCcchhcccccCCCCCccchhhhhhhhhhhhhhccccCCcccccchhhHHHHHHHHhHHHHHHHHHHHHHHhhcccc
Q 008231          274 PDHPSLLNEYQNAKVPHTEKFKCLDKAAIIEDNAVANENKNNSWIVSTVTEVEEVKMVLKLLPIWATCILFWTVYSQMTT  353 (573)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  353 (573)
                      ++              ..+.                     ..+    ....++++.....+..++........+...+.
T Consensus       190 ~~--------------~~~~---------------------~~~----~~~l~~~~~~~~l~~~~l~~~~~~~~~~~~~~  230 (382)
T TIGR00902       190 DE--------------SQGD---------------------SAF----IALLKNPMNLRFLAAVCLIQGAHAAYYGFSAI  230 (382)
T ss_pred             cc--------------cccc---------------------hhH----HHHHcChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            00              0000                     000    00011111112222222222222222222222


Q ss_pred             hhhhhhhccccccccceecccccchhhHHHHHHHHHhhhhhhhhhhcccccccCCCchHHHHHHHHHHHHHHHHHHHHHH
Q 008231          354 FTVEQATFMNRKIGSFTVPSGSLSAFLFITILLFTSLNEKVFVPLARKITHSIQGMTSLQRVGTGLIFSVIAMIVSAVIE  433 (573)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~i~~i~~~~~~  433 (573)
                      +. .. .+.+      ....+.+..+..+..++...+.+++.    +|.       +..+.+..+.++..+..+.+...+
T Consensus       231 ~l-~~-~g~s------~~~~g~l~~~~~~~~i~~~~~~~~l~----~r~-------g~~~~l~~~~~~~~~~~~~~~~~~  291 (382)
T TIGR00902       231 YW-QA-AGIS------ASATGLLWGIGVLAEIIIFAFSNKLF----QNC-------SARDLLLISAIACVGRWAIIGAIE  291 (382)
T ss_pred             HH-HH-CCCC------HhHHHHHHHHHHHHHHHHHHHhHHHH----hhC-------CHHHHHHHHHHHHHHHHHHHHhHh
Confidence            11 11 1111      11223334445555555555555554    442       233446778888888877766542


Q ss_pred             HHHHhhcccCCcccchhHHHHHHHHHHHHHHhhhhhhhheeecccCchhHHHHHHHHH-HHHHHHHHHHHHHHHHHhhhh
Q 008231          434 QQRRETSVQKHIQISAFWLVPQYFLVGAGEAFVYVGQLEFFIREGPERMKSMSTGLFL-SAISMGMFVSSMLVSIVDKIT  512 (573)
Q Consensus       434 ~~~~~~~~~~~~~~~~~~lv~~~~l~g~~~~~~~~~~~~~~~~~~p~~~rg~~~gi~~-~~~~lg~~ig~~~~~~i~~~~  512 (573)
                                    +.+.++...+++++.++...+....++.+. |++.+++++++++ ....+|..+++.+.|++.+..
T Consensus       292 --------------~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~  356 (382)
T TIGR00902       292 --------------AFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTL  356 (382)
T ss_pred             --------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence                          455666678999999999999999999988 9999999999987 567899999999999998642


Q ss_pred             ccCccccccccchhhHHHHHHHHHHHHHHH
Q 008231          513 NKHWLRSNLNKGKLNNFYWLLAVLGLLNFM  542 (573)
Q Consensus       513 ~~~w~~~~~~~~~~~~~~~~~a~~~~l~~~  542 (573)
                      +             ...|+..+++.+++.+
T Consensus       357 g-------------~~~~~~~~~~~~~~~~  373 (382)
T TIGR00902       357 G-------------AGTFVFMAIIAAAAFF  373 (382)
T ss_pred             c-------------HHHHHHHHHHHHHHHH
Confidence            1             2456667776665543

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=99.90  E-value=4.8e-21  Score=200.26  Aligned_cols=159  Identities=16%  Similarity=0.125  Sum_probs=137.9

Q ss_pred             HHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHhhccCCCCCCCC
Q 008231           51 GISMNLVTYLVGDLHLSSAKSATIVTNFMGTLNLLGLLGGFLADAKLGRYLTVAIFASVTALVVGLLTSATSIPSMRPPQ  130 (573)
Q Consensus        51 ~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (573)
                      ...+.+|.+. +++|+|..+.+++.+.+.++..++.+++|+++||+ |||+++..+..+.+++..++.++.         
T Consensus         9 ~~~p~~~~~~-~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~~~i~~~~~~~~~---------   77 (377)
T PRK11102          9 MYLPALPVIA-ADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSF-GRKPVILGGTLVFALAAVACALAQ---------   77 (377)
T ss_pred             HHhccHHHHH-HHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhc-CChHHHHHHHHHHHHHHHHHHHHc---------
Confidence            4456666665 57999999999999999999999999999999998 999999999999999998888753         


Q ss_pred             CccccccccccccchhhHHHHHHHHHHHHHhcCccccccccccccCCCCCCCchHHHhHHHHHHHHHHHHHhhhHHHHHH
Q 008231          131 CDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKAMIFFFNRFYFAISIGSLFAVIV  210 (573)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~~  210 (573)
                                       +.+.+++.|++.|++.+...+...+++.|.+|+++      |++++++.+...++|..++|.+
T Consensus        78 -----------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~~  134 (377)
T PRK11102         78 -----------------TIDQLIYMRFLHGLAAAAASVVINALMRDMFPKEE------FSRMMSFVTLVMTIAPLLAPII  134 (377)
T ss_pred             -----------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH------HHHHHHHHHHHHHHHHHHHHHH
Confidence                             56788899999999999998999999999999888      9999999999999999999999


Q ss_pred             hhhhhcccchhHHHHHHHHHHHHHHHHHHhcCc
Q 008231          211 LVYVQDNVGRGWGYGISAGTMVVAAAILLIGTP  243 (573)
Q Consensus       211 ~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~  243 (573)
                      ++++.+..||++.|++.++..++..+...+..+
T Consensus       135 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (377)
T PRK11102        135 GGWLLVWFSWHAIFWVLALAAILAAALVFFFIP  167 (377)
T ss_pred             HHHHHHHcChHHHHHHHHHHHHHHHHHHHHhCC
Confidence            999999899999998877766655544443333

>PRK10133 L-fucose transporter; Provisional

Probab=99.90  E-value=1.2e-20  Score=201.09  Aligned_cols=154  Identities=16%  Similarity=0.096  Sum_probs=124.1

Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHH
Q 008231           31 GWLAAGLILGTELSERICAMGISMNLVTYLVGDLHLSSAKSATIVTNFMGTLNLLGLLGGFLADAKLGRYLTVAIFASVT  110 (573)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~  110 (573)
                      ....+..+.+..+...+........+ +.+++++|+|..+.+++.+.+.+++.+++++.|++.||+ |||+++.++..++
T Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~-p~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~-G~r~~l~~g~~~~  101 (438)
T PRK10133         24 YIIPFALLCSLFFLWAVANNLNDILL-PQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKL-SYKAGIITGLFLY  101 (438)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHH
Confidence            44455555555566556654444444 456999999999999999999999999999999999999 9999999999999


Q ss_pred             HHHHHHHHhhccCCCCCCCCCccccccccccccchhhHHHHHHHHHHHHHhcCccccccccccccCCCCCCCchHHHhHH
Q 008231          111 ALVVGLLTSATSIPSMRPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKAMI  190 (573)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~  190 (573)
                      +++.+++..+...                       +++..++++|+++|+|.+...+...+++.|..|+++      |.
T Consensus       102 ~~~~~l~~~~~~a-----------------------~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~------~~  152 (438)
T PRK10133        102 ALGAALFWPAAEI-----------------------MNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESS------GH  152 (438)
T ss_pred             HHHHHHHHHHHhc-----------------------CCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhh------HH
Confidence            9999876421100                       367789999999999999999999999998766555      66


Q ss_pred             HHHHHHHHHHHhhhHHHHHHhhhhh
Q 008231          191 FFFNRFYFAISIGSLFAVIVLVYVQ  215 (573)
Q Consensus       191 ~~~~~~~~~~~ig~~~~~~~~~~l~  215 (573)
                      ...++.+....+|..+||.+++.+.
T Consensus       153 ~~~s~~~~~~~~G~~~g~~~g~~l~  177 (438)
T PRK10133        153 FRLNLAQTFNSFGAIIAVVFGQSLI  177 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6788888899999999998887543

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.89  E-value=1.7e-20  Score=202.04  Aligned_cols=358  Identities=15%  Similarity=0.077  Sum_probs=234.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHH
Q 008231           34 AAGLILGTELSERICAMGISMNLVTYLVGDLHLSSAKSATIVTNFMGTLNLLGLLGGFLADAKLGRYLTVAIFASVTALV  113 (573)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~  113 (573)
                      .+..+.++.++.+++.+....-++-+ ..++.-|+...+++.....+...+..+++|.++||+ .|||+++.+-.+.++.
T Consensus        11 ~Fr~lw~a~~iS~lG~~~~~va~~wl-v~~lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~-drrrili~~~~~~~~~   88 (524)
T PF05977_consen   11 NFRRLWIAQLISNLGDWMQTVALAWL-VTQLTGSPLMVALVQAASTLPILLLSLFAGALADRF-DRRRILILSQLLRALV   88 (524)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-cchHHHHHHHHHHHHH
Confidence            34444455555555554433334433 335677899999999999999999999999999999 9999999998877766


Q ss_pred             HHHHHhhccCCCCCCCCCccccccccccccchhhHHHHHHHHHHHHHhcCccccccccccccCCCCCCCchHHHhHHHHH
Q 008231          114 VGLLTSATSIPSMRPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKAMIFFF  193 (573)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  193 (573)
                      .+.+++.....                     ..+.+.+++..++.|++.+...|+..+++.|..|+++      ...+.
T Consensus        89 ~~~L~~l~~~~---------------------~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~------L~~A~  141 (524)
T PF05977_consen   89 ALLLAVLAFFG---------------------LLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKED------LPAAN  141 (524)
T ss_pred             HHHHHHHHHhC---------------------cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhh------HHHHH
Confidence            55554432111                     1367788888999999999999999999999999988      99999


Q ss_pred             HHHHHHHHhhhHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHHHHhcCccccccCCCCCchhHHHHHHHHHHhccCCCC
Q 008231          194 NRFYFAISIGSLFAVIVLVYVQDNVGRGWGYGISAGTMVVAAAILLIGTPWYRFKKPRGSPLTVIWRVLLLAWKKRSHPY  273 (573)
Q Consensus       194 ~~~~~~~~ig~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (573)
                      ++.+...|+...+||.++|.+....|-.++|.+.++..++..+.+...+++.++++..+++.....+.            
T Consensus       142 al~s~~~niar~iGPalgG~Lva~~G~~~~f~inalsfl~~i~~l~~~~~~~~~~~~~~e~~~~~l~~------------  209 (524)
T PF05977_consen  142 ALNSISFNIARIIGPALGGILVAFFGAAAAFLINALSFLISILALLRWKPPPPPSSLPRERFFSALRE------------  209 (524)
T ss_pred             HHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccchhhhhhhHHH------------
Confidence            99999999999999999999998899999999888877665554444333221111111110000000            


Q ss_pred             CCCCCcchhcccccCCCCCccchhhhhhhhhhhhhhccccCCcccccchhhHHHHHHHHhHH-HHHHHHHHHHHHhhccc
Q 008231          274 PDHPSLLNEYQNAKVPHTEKFKCLDKAAIIEDNAVANENKNNSWIVSTVTEVEEVKMVLKLL-PIWATCILFWTVYSQMT  352 (573)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~  352 (573)
                                                                .+     ..+...+.+...+ ..+++......... ..
T Consensus       210 ------------------------------------------G~-----ryv~~~~~l~~~l~~~~~~~l~~~a~~a-Ll  241 (524)
T PF05977_consen  210 ------------------------------------------GL-----RYVRSSPPLRSVLLRSFLFNLFASAVWA-LL  241 (524)
T ss_pred             ------------------------------------------HH-----HHHhcchHHHHHHHHHHHHHHhhhHHHH-hh
Confidence                                                      00     0000111111111 11111111111111 11


Q ss_pred             chhhhhhhccccccccceecccccchhhHHHHHHHHHhhhhhhhhhhcccccccCCCchHHHHHHHHHHHHHHHHHHHHH
Q 008231          353 TFTVEQATFMNRKIGSFTVPSGSLSAFLFITILLFTSLNEKVFVPLARKITHSIQGMTSLQRVGTGLIFSVIAMIVSAVI  432 (573)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~i~~i~~~~~  432 (573)
                      +.+..+..+.+      ....+.+.++..++.++.+.+..++    .+|.       +..+.+..+.++.+++++.+++.
T Consensus       242 Pl~a~~~l~~~------a~~yGll~a~~gvGai~Gal~~~~l----~~~~-------~~~~lv~~~~~~~a~~~~~lal~  304 (524)
T PF05977_consen  242 PLFARDVLGGG------ASGYGLLLAAFGVGAILGALLLPRL----RRRL-------SSRRLVLLASLLFALALLLLALS  304 (524)
T ss_pred             hHHHHHHhCCc------HHHHHHHHHHHHHHHHHHHHHHHHh----hccc-------CcchhhHHHHHHHHHHHHHHhcc
Confidence            12222211111      1123445566666666666655554    2221       12233566666667666666554


Q ss_pred             HHHHHhhcccCCcccchhHHHHHHHHHHHHHHhhhhhhhheeecccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008231          433 EQQRRETSVQKHIQISAFWLVPQYFLVGAGEAFVYVGQLEFFIREGPERMKSMSTGLFLSAISMGMFVSSMLVSIVDKI  511 (573)
Q Consensus       433 ~~~~~~~~~~~~~~~~~~~lv~~~~l~g~~~~~~~~~~~~~~~~~~p~~~rg~~~gi~~~~~~lg~~ig~~~~~~i~~~  511 (573)
                      .              +.+...+.+++.|++....+....+.+++..|+++||+..+++.+....+..+|..+.|.+.+.
T Consensus       305 ~--------------~~~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~  369 (524)
T PF05977_consen  305 P--------------SFWLALIALFLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADH  369 (524)
T ss_pred             h--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2              4555667778889999999999999999999999999999999999999999999999998764

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=99.89  E-value=4.4e-22  Score=201.68  Aligned_cols=186  Identities=18%  Similarity=0.126  Sum_probs=167.4

Q ss_pred             cccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHH
Q 008231           26 RSKTGGWLAAGLILGTELSERICAMGISMNLVTYLVGDLHLSSAKSATIVTNFMGTLNLLGLLGGFLADAKLGRYLTVAI  105 (573)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~  105 (573)
                      .+.+..++.+.+++.+.++++++-|.+...+ .-+++.+|++++..|++..++.+.+.++.|+.|+++||| .||+++.+
T Consensus        26 ~~~~~~~~~l~il~~vnlmny~Dr~~iagv~-~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadry-NR~~v~~v  103 (493)
T KOG1330|consen   26 LSMKSPTLTLVILCLVNLMNYADRYTIAGVL-KEVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRY-NRKRVIAV  103 (493)
T ss_pred             cccccchHHHHHHHHHHHHHHhhhhhhhhhh-HHHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhc-CcceEEee
Confidence            4455666788899999999999999887744 466889999999999999999999999999999999999 99999999


Q ss_pred             HHHHHHHHHHHHHhhccCCCCCCCCCccccccccccccchhhHHHHHHHHHHHHHhcCccccccccccccCCCCCCCchH
Q 008231          106 FASVTALVVGLLTSATSIPSMRPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKE  185 (573)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~~~  185 (573)
                      |..++.++.++++++                          ..++.+.+.|.+.|+|.+.+.|.++++++|.+|+++   
T Consensus       104 G~~iW~~Av~~~~fs--------------------------~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~---  154 (493)
T KOG1330|consen  104 GIFIWTLAVFASGFS--------------------------NHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDK---  154 (493)
T ss_pred             HHHHHHHHHHHHHHH--------------------------HHHHHHHHHHHHhccchhhhcccchhHhhhcCcchh---
Confidence            999999999999987                          478999999999999999999999999999999998   


Q ss_pred             HHhHHHHHHHHHHHHHhhhHHHHHHhhhhhcccc-hhHHHHHHHHHHHHHHHHHHhcCccc
Q 008231          186 EKAMIFFFNRFYFAISIGSLFAVIVLVYVQDNVG-RGWGYGISAGTMVVAAAILLIGTPWY  245 (573)
Q Consensus       186 ~~~r~~~~~~~~~~~~ig~~~~~~~~~~l~~~~g-~~~~f~~~~~~~~~~~~~~~~~~~~~  245 (573)
                         |+++++++|+++++|..+|.++++.+....+ |||.|+..+++.++..++.+++.++.
T Consensus       155 ---Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~Wr~af~~~avl~vi~~~L~~~f~~eP  212 (493)
T KOG1330|consen  155 ---RSRVLGIFYFAIPVGSGLGYVVGSVVASLTFWWRWAFRGSAVLGVIVGLLVFLFVREP  212 (493)
T ss_pred             ---hhHHHHHhhhhcccccceeEEeeeeeccCccceEEEEEeehHHHHHHHHHHHhhccCc
Confidence               9999999999999999999999999988777 99999998888777766665555543

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.89  E-value=3.6e-20  Score=194.90  Aligned_cols=172  Identities=14%  Similarity=0.047  Sum_probs=141.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHH
Q 008231           38 ILGTELSERICAMGISMNLVTYLVGDLHLSSAKSATIVTNFMGTLNLLGLLGGFLADAKLGRYLTVAIFASVTALVVGLL  117 (573)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~  117 (573)
                      .....+....+.....+.+| .+.+++|.|..+.+++.+.+.++..++.++.|+++||+ |||+.+.++..+.+++..++
T Consensus         8 ~~~~~~~~~~~~~~~~~~lp-~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~-g~r~~l~~~~~~~~i~~~~~   85 (392)
T PRK10473          8 SFALVLLYPAGIDMYLVGLP-RIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRS-GRKPVAIPGAALFIIASLLC   85 (392)
T ss_pred             HHHHHHHHHHHHHHHhhhHH-HHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHh-CChHHHHHHHHHHHHHHHHH
Confidence            34444445555544444444 55678999999999999999999999999999999998 99999999999999988888


Q ss_pred             HhhccCCCCCCCCCccccccccccccchhhHHHHHHHHHHHHHhcCccccccccccccCCCCCCCchHHHhHHHHHHHHH
Q 008231          118 TSATSIPSMRPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKAMIFFFNRFY  197 (573)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~  197 (573)
                      ..+.                          +.+.++++|++.|++.+...+...+++.|.+|+++      |+++.++.+
T Consensus        86 ~~~~--------------------------~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~~  133 (392)
T PRK10473         86 SLAE--------------------------TSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRR------RAKVLSLLN  133 (392)
T ss_pred             HHhC--------------------------cHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHH------HHHHHHHHH
Confidence            7753                          56678889999999999988889999999999888      999999999


Q ss_pred             HHHHhhhHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHHHHhcCc
Q 008231          198 FAISIGSLFAVIVLVYVQDNVGRGWGYGISAGTMVVAAAILLIGTP  243 (573)
Q Consensus       198 ~~~~ig~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~  243 (573)
                      ...++|..++|.+++++.+..||++.|++.++..++..+......+
T Consensus       134 ~~~~i~~~~~~~i~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~  179 (392)
T PRK10473        134 GITCIIPVLAPVLGHLIMLKFPWQSLFYTMAAMGILVLLLSLFILK  179 (392)
T ss_pred             HHHHHHHHHHHHHHHHHHhCcChHHHHHHHHHHHHHHHHHHHHHcC
Confidence            9999999999999999888889999998877665555444333333

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.89  E-value=1.6e-20  Score=197.88  Aligned_cols=388  Identities=11%  Similarity=0.018  Sum_probs=231.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHH
Q 008231           33 LAAGLILGTELSERICAMGISMNLVTYLVGDLHLSSAKSATIVTNFMGTLNLLGLLGGFLADAKLGRYLTVAIFASVTAL  112 (573)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~  112 (573)
                      |.+|......++...++....++++.|+++++|+|..+.+++.+.+.+...+++++.|+++||+ |||+.++.+....++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~-grr~~~~~~~~~~~~   80 (396)
T TIGR00882         2 TNFWMFGLFFFLYFFIMSAYFPFFPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKL-GLKKHLLWIISGLLV   80 (396)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHH
Confidence            4567788888888888888999999999999999999999999999999999999999999998 999999887766655


Q ss_pred             HHHHHHhhccCCCCCCCCCccccccccccccchhhHHHHHHHHHHHHHhcCccccccccccccCCCCCCCchHHHhHHHH
Q 008231          113 VVGLLTSATSIPSMRPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKAMIFF  192 (573)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~  192 (573)
                      +..........+.                  ........+++++++.|++.+...+....+..|..+  +      ++..
T Consensus        81 ~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~--~------~~~~  134 (396)
T TIGR00882        81 LFAPFFIYVFGPL------------------LQSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVSR--N------SNFE  134 (396)
T ss_pred             HHHHHHHHHhhhH------------------HHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhhh--h------cccc
Confidence            4433221100000                  000123345667888888888887777776655322  2      4456


Q ss_pred             HHHHHHHHHhhhHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHHHHhcCccccccCCCCCchhHHHHHHHHHHhccCCC
Q 008231          193 FNRFYFAISIGSLFAVIVLVYVQDNVGRGWGYGISAGTMVVAAAILLIGTPWYRFKKPRGSPLTVIWRVLLLAWKKRSHP  272 (573)
Q Consensus       193 ~~~~~~~~~ig~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (573)
                      ++..+...++|..+||.+++.+.+ .+|+.+|++.++..++..+..+...++.++    ++..+            +..+
T Consensus       135 ~g~~~~~~~~g~~~g~~~~g~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~----~~~~~------------~~~~  197 (396)
T TIGR00882       135 YGKARMFGCVGWALCASIAGILFS-IDPQIVFWLGSGFALILMLLLMFAKPKAPS----SATVA------------NALG  197 (396)
T ss_pred             cchhhhhcccHHHHHHHHHhhhhc-cCchHHHHHHHHHHHHHHHHHHHhCCCCch----hhhhh------------cccc
Confidence            677778889999999999998865 699999998877666554444333322111    00000            0000


Q ss_pred             CCCCCCcchhcccccCCCCCccchhhhhhhhhhhhhhccccCCcccccchhhHHHHHHHHhHHHHHHHHHHHH-HHhhcc
Q 008231          273 YPDHPSLLNEYQNAKVPHTEKFKCLDKAAIIEDNAVANENKNNSWIVSTVTEVEEVKMVLKLLPIWATCILFW-TVYSQM  351 (573)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~  351 (573)
                      .                ..+..+..+                       ..+..+.|...............+ ....+.
T Consensus       198 ~----------------~~~~~~~~~-----------------------~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~  238 (396)
T TIGR00882       198 A----------------NASAFSLKL-----------------------ALELFRQRKFWMFVLYVVGVACVYDVFDQQF  238 (396)
T ss_pred             c----------------ccCCCCHHH-----------------------HHHHHcCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence            0                000000000                       000001111111111111111111 121222


Q ss_pred             cchhhhhhhccccccccceecccccchhhHHHHHHHHHhhhhhhhhhhcccccccCCCchHHHHHHHHHHHHHHHHHHHH
Q 008231          352 TTFTVEQATFMNRKIGSFTVPSGSLSAFLFITILLFTSLNEKVFVPLARKITHSIQGMTSLQRVGTGLIFSVIAMIVSAV  431 (573)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~i~~i~~~~  431 (573)
                      +.++..........    ....+.+.++..+...+.....+++.+|..+|+           .+..+.++.+++++....
T Consensus       239 ~~y~~~~~~~~~~~----~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~-----------~l~~~~~l~~l~~~~~~~  303 (396)
T TIGR00882       239 ANFFTSFFATPQQG----TRVFGYVTTMGELLNALIMFCAPLIINRIGAKN-----------ALLIAGTIMSVRIIGSSF  303 (396)
T ss_pred             HHHHHHhccccccc----hHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch-----------hHHHHHHHHHHHHHHHHh
Confidence            22222111000000    001233344444555555566666655554442           255666666666554433


Q ss_pred             HHHHHHhhcccCCcccchhHHHHHHHHHHHHHHhhhhhhhheeecccCchhHHHHHHH-HHHHHHHHHHHHHHHHHHHhh
Q 008231          432 IEQQRRETSVQKHIQISAFWLVPQYFLVGAGEAFVYVGQLEFFIREGPERMKSMSTGL-FLSAISMGMFVSSMLVSIVDK  510 (573)
Q Consensus       432 ~~~~~~~~~~~~~~~~~~~~lv~~~~l~g~~~~~~~~~~~~~~~~~~p~~~rg~~~gi-~~~~~~lg~~ig~~~~~~i~~  510 (573)
                      .              .+.+++++..++.+++..........+..+..|++.+++..+. ++....+|+.+++.+.|++.+
T Consensus       304 ~--------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~  369 (396)
T TIGR00882       304 A--------------TTALEVVILKMLHAFEVPFLLVGCFKYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYD  369 (396)
T ss_pred             c--------------CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHH
Confidence            2              1344556667778887766666666777888888888887776 678899999999999999986


Q ss_pred             hhccCccccccccchhhHHHHHHHHHHHHHHHHH
Q 008231          511 ITNKHWLRSNLNKGKLNNFYWLLAVLGLLNFMVF  544 (573)
Q Consensus       511 ~~~~~w~~~~~~~~~~~~~~~~~a~~~~l~~~~~  544 (573)
                      ..            ++...|.+.+++.++..++.
T Consensus       370 ~~------------G~~~~f~~~~~~~~i~~~~~  391 (396)
T TIGR00882       370 SI------------GFQGAYLVLGCIVLLFTLIS  391 (396)
T ss_pred             hc------------ccHHHHHHHHHHHHHHHHHH
Confidence            42            13456666666666655544

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.88  E-value=1.9e-20  Score=199.78  Aligned_cols=355  Identities=14%  Similarity=0.106  Sum_probs=220.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhHHHHHhhhc---cchhH-HHHHHHHHHHHHHHHH
Q 008231           42 ELSERICAMGISMNLVTYLVGDLHLSSAKSATIVTNFMGTLNLLGLLGGFLADAK---LGRYL-TVAIFASVTALVVGLL  117 (573)
Q Consensus        42 ~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~---~Grr~-~~~~~~~~~~~~~~~~  117 (573)
                      .+..++.+..+.++++.|+++++|+|+.++|.+.++..+...+..|+.|+++||.   +|||| .++++....+++.+++
T Consensus         8 ~~~~~~~~~~~~~~l~~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~   87 (437)
T TIGR00792         8 DFGNNFIFAIVSTYLLFFYTDVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLL   87 (437)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHH
Confidence            3455566666778899999999999999999999999999999999999999983   27755 5667777788777777


Q ss_pred             HhhccCCCCCCCCCccccccccccccchhhHHHHHHHHHHHHHhcCccccccccccccCCCCC-CCchHHHhHHHHHHHH
Q 008231          118 TSATSIPSMRPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDT-SDPKEEKAMIFFFNRF  196 (573)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~-~~~~~~~~r~~~~~~~  196 (573)
                      ....+...                    ......+++.+++.+++.+....+..++..|..++ ++      |++..++.
T Consensus        88 ~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~------R~~~~~~~  141 (437)
T TIGR00792        88 FTTPDFSA--------------------TGKLVYAYITYILLGLFYSFVNIPYWSLVPAITLDPRE------RESLSTFR  141 (437)
T ss_pred             HhCCCCCc--------------------chHHHHHHHHHHHHHHHHHhhcccHhhCcccccCCHHH------HHHHHHHH
Confidence            66432110                    02345566677788888888888888888898753 44      99999998


Q ss_pred             HHHHHhhhHHHHHHhhhhh-------cccchhHHHHHHHHHHHHHHHHHHhcCccccccCCCCCchhHHHHHHHHHHhcc
Q 008231          197 YFAISIGSLFAVIVLVYVQ-------DNVGRGWGYGISAGTMVVAAAILLIGTPWYRFKKPRGSPLTVIWRVLLLAWKKR  269 (573)
Q Consensus       197 ~~~~~ig~~~~~~~~~~l~-------~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (573)
                      +.+.++|..+++.+.+.+.       +..||++++.+.++..++..+...+..++.+++.++.+                
T Consensus       142 ~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~e~~~~~~~~~----------------  205 (437)
T TIGR00792       142 RFGATLGGLLVAVIVLPLVSYFGGGDDKFGWFMFALVLALIGVVSLIICFFGTKERYSEIPKNI----------------  205 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCcccccHHHHHHHHHHHHHHHHHHHHcCCEecCCCCCccc----------------
Confidence            8888888887776665554       24589998887777665554444443332211000000                


Q ss_pred             CCCCCCCCCcchhcccccCCCCCccchhhhhhhhhhhhhhccccCCcccccchhhHHHHHHHHhHHHHHHHHHHHHHHhh
Q 008231          270 SHPYPDHPSLLNEYQNAKVPHTEKFKCLDKAAIIEDNAVANENKNNSWIVSTVTEVEEVKMVLKLLPIWATCILFWTVYS  349 (573)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  349 (573)
                                           +++.+..+..                      +...+.|.....+...+.....+....
T Consensus       206 ---------------------~~~~~~~~~~----------------------~~l~~~~~~~~~~~~~~~~~~~~~~~~  242 (437)
T TIGR00792       206 ---------------------EKKLSLKQIF----------------------KALFKNDQLLILCLAYLFYNLAFNIKN  242 (437)
T ss_pred             ---------------------ccCCCHHHHH----------------------HHHhCCHHHHHHHHHHHHHHHHHHHHc
Confidence                                 0000000000                      001111222221111111111111111


Q ss_pred             cccchhhhhhhccccccccceecccccchhhHHHHHHHHHhhhhhhhhhhcccccccCCCchHHHHHHHHHHHHHHHHHH
Q 008231          350 QMTTFTVEQATFMNRKIGSFTVPSGSLSAFLFITILLFTSLNEKVFVPLARKITHSIQGMTSLQRVGTGLIFSVIAMIVS  429 (573)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~i~~i~~  429 (573)
                      ....++....  .. .    ....+.+..+..++.++..++.+++.+|+.+|.           .+..+.++..++++.+
T Consensus       243 ~~~~~~~~~~--~~-~----~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~-----------~~~~~~~~~~~~~~~~  304 (437)
T TIGR00792       243 GVQVYYFTYV--LG-D----PELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKI-----------LFAGGILLMVLGYLIF  304 (437)
T ss_pred             chhheeEeee--cC-C----hHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHH-----------HHHHHHHHHHHHHHHH
Confidence            1111111111  01 0    111223344455666677777777766554432           2566666666666655


Q ss_pred             HHHHHHHHhhcccCCcccchhHHHHHHHHHHHHHHhhhhhhhheeecccC-------chhHHHHHHHHHHHHHHHHHHHH
Q 008231          430 AVIEQQRRETSVQKHIQISAFWLVPQYFLVGAGEAFVYVGQLEFFIREGP-------ERMKSMSTGLFLSAISMGMFVSS  502 (573)
Q Consensus       430 ~~~~~~~~~~~~~~~~~~~~~~lv~~~~l~g~~~~~~~~~~~~~~~~~~p-------~~~rg~~~gi~~~~~~lg~~ig~  502 (573)
                      .+..             .+.+.+++..++.+++.+...+..++++.|..|       ++.+|.+.|++++...+|+.+++
T Consensus       305 ~~~~-------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~  371 (437)
T TIGR00792       305 FFAG-------------SNLPLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAG  371 (437)
T ss_pred             HHcc-------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHH
Confidence            4421             133444556677888888888888888888765       56789999999999999999999


Q ss_pred             HHHHHHhhhh
Q 008231          503 MLVSIVDKIT  512 (573)
Q Consensus       503 ~~~~~i~~~~  512 (573)
                      .+.|.+.+..
T Consensus       372 ~i~g~ll~~~  381 (437)
T TIGR00792       372 FLVGLILGII  381 (437)
T ss_pred             HHHHHHHHHc
Confidence            9999998754

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>TIGR00889 2A0110 nucleoside transporter

Probab=99.88  E-value=4.6e-20  Score=195.64  Aligned_cols=385  Identities=14%  Similarity=0.068  Sum_probs=225.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhHHHHHhhhccch-hHHHHHHHHHHHHHHH
Q 008231           37 LILGTELSERICAMGISMNLVTYLVGDLHLSSAKSATIVTNFMGTLNLLGLLGGFLADAKLGR-YLTVAIFASVTALVVG  115 (573)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr-r~~~~~~~~~~~~~~~  115 (573)
                      -+.+..++...++-...++++.|+.+++|+|..|.|++.+.+.++..++++++|+++||+ || |+++.++..+.+++..
T Consensus         6 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~-g~~r~~~~~~~~~~~~~~~   84 (418)
T TIGR00889         6 KLKFMSFLQWFIWGSWLVTLGSYMSKTLHFSGAEIGWVYSSTGIAAILMPILVGIIADKW-LSAQKVYAVCHFAGALLLF   84 (418)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cccHHHHHHHHHHHHHHHH
Confidence            355666667777767789999999999999999999999999999999999999999998 55 7788888888777777


Q ss_pred             HHHhhccCCCCCCCCCccccccccccccchhhHHHHHHHHHHHHHhcCcccccccccccc--------CCCCCCCchHHH
Q 008231          116 LLTSATSIPSMRPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGS--------DQFDTSDPKEEK  187 (573)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~--------~~~~~~~~~~~~  187 (573)
                      +..+.+                          +++.+++.|++.+++.+...+...++..        |......     
T Consensus        85 ~~~~~~--------------------------~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~-----  133 (418)
T TIGR00889        85 FAAQVT--------------------------TPAGMFPVLLANSLAYMPTIALTNSISYANLPQAGLDVVTDFP-----  133 (418)
T ss_pred             HHHHhc--------------------------CHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhhcCCCchhcCC-----
Confidence            776652                          4667788888888877666555444322        2122112     


Q ss_pred             hHHHHHHHHHHHHHhhhHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHHHHhcCccccccCCCC-CchhHHHHHHHHHH
Q 008231          188 AMIFFFNRFYFAISIGSLFAVIVLVYVQDNVGRGWGYGISAGTMVVAAAILLIGTPWYRFKKPRG-SPLTVIWRVLLLAW  266 (573)
Q Consensus       188 ~r~~~~~~~~~~~~ig~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  266 (573)
                       |.+.+|      .+|..+||.+++.+.....|. +|++.++..++..+. .+..|+.++.++++ ....+         
T Consensus       134 -~~r~~G------~lG~~ig~~l~g~l~~~~~~~-~f~~~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~---------  195 (418)
T TIGR00889       134 -PIRVMG------TIGFIAAMWAVSLLDIELSNI-QLYITAGSSALLGVF-ALTLPDIPVAKSTAKMSIKV---------  195 (418)
T ss_pred             -Ceeeeh------hHHHHHHHHHHHHhcccchhH-HHHHHHHHHHHHHHH-HhcCCCCCCCccccccCHHH---------
Confidence             444444      478888888888884433344 455555544444433 22333321100000 00000         


Q ss_pred             hccCCCCCCCCCcchhcccccCCCCCccchhhhhhhhhhhhhhccccCCcccccchhhHHHHHHHHh-HHHHHHHHHHHH
Q 008231          267 KKRSHPYPDHPSLLNEYQNAKVPHTEKFKCLDKAAIIEDNAVANENKNNSWIVSTVTEVEEVKMVLK-LLPIWATCILFW  345 (573)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~  345 (573)
                                                .                     .++   ......+.++... .+..++......
T Consensus       196 --------------------------~---------------------~~~---~~~~~~k~~~~~~~~~~~~~~~~~~~  225 (418)
T TIGR00889       196 --------------------------M---------------------LGL---DAFILFKNKRMAIFFFFSMLLGAPLQ  225 (418)
T ss_pred             --------------------------H---------------------hhh---hHHHHhcCCCeeeHHHHHHHHHhHHH
Confidence                                      0                     000   0000000111111 111111111111


Q ss_pred             HHhhcccchhhhhhhccccccc-cce-ecccccchhhHHHHHHHHHhhhhhhhhhhcccccccCCCchHHHHHHHHHHHH
Q 008231          346 TVYSQMTTFTVEQATFMNRKIG-SFT-VPSGSLSAFLFITILLFTSLNEKVFVPLARKITHSIQGMTSLQRVGTGLIFSV  423 (573)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~  423 (573)
                      ..+...+.+....  +.+.... +.. ...+...++..+..++.....+++.||+.+|+           .+..+.++.+
T Consensus       226 ~~~~~~~~~~~~~--g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~-----------~l~~~~~~~~  292 (418)
T TIGR00889       226 ITNIFGNGFLHEF--GRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKK-----------VMLLSLVAWA  292 (418)
T ss_pred             HHHHhHHHHHHHh--cccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHH-----------HHHHHHHHHH
Confidence            1111111111110  1010000 000 11233444555555666666777766654442           2666777776


Q ss_pred             HHHHHHHHHHHHHHhhcccCCcccchhHHHHHHHHHHHHHHhhhhhhhheeecccCchhHHHHHHHHH-HHHHHHHHHHH
Q 008231          424 IAMIVSAVIEQQRRETSVQKHIQISAFWLVPQYFLVGAGEAFVYVGQLEFFIREGPERMKSMSTGLFL-SAISMGMFVSS  502 (573)
Q Consensus       424 i~~i~~~~~~~~~~~~~~~~~~~~~~~~lv~~~~l~g~~~~~~~~~~~~~~~~~~p~~~rg~~~gi~~-~~~~lg~~ig~  502 (573)
                      ++++++....          ......+.+++..++.+++++...+....++.|.+|++.||+++|+.+ ....+|+.+|+
T Consensus       293 v~~~l~~~~~----------~~~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp  362 (418)
T TIGR00889       293 LRFGFFAYGD----------PEYFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGY  362 (418)
T ss_pred             HHHHHHHHcC----------cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHH
Confidence            6665554421          111123445566788889888888888899999999999999999997 56889999999


Q ss_pred             HHHHHHhhhhccCccccccccchhhHHHHHHHHHHHHHHHHHHHHHhh
Q 008231          503 MLVSIVDKITNKHWLRSNLNKGKLNNFYWLLAVLGLLNFMVFLFFAMK  550 (573)
Q Consensus       503 ~~~~~i~~~~~~~w~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~  550 (573)
                      .+.|++.+..+.      .+..++...|.+.+++.+++.+.++++.++
T Consensus       363 ~l~G~l~~~~g~------~~~~~~~~~f~~~~~~~~i~~~l~~~~~~~  404 (418)
T TIGR00889       363 ILSGVMVEKMFA------YGTFDWQTMWLFFAGYIAILAVLFMIFFKY  404 (418)
T ss_pred             HHHHHHHHHhcc------ccCCchHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            999998875320      000123456777777777777777777654

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.88  E-value=3.3e-20  Score=221.42  Aligned_cols=361  Identities=12%  Similarity=0.076  Sum_probs=220.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCch--hhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHH
Q 008231           33 LAAGLILGTELSERICAMGISMNLVTYLVGDLHLSSA--KSATIVTNFMGTLNLLGLLGGFLADAKLGRYLTVAIFASVT  110 (573)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~--~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~  110 (573)
                      +.+...+++.++..++..+....+..++...++.+..  ..+++.+++.+++.++++++|+++||+ |||++++++.++.
T Consensus         9 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~-grk~~l~~~~~~~   87 (1146)
T PRK08633          9 IGFLPLLLTQFLNAFNDLGHKILIQNTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKF-SKNRVIRIVKLFE   87 (1146)
T ss_pred             hhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccc-cHHHHHHHHHHHH
Confidence            4555566666666666655666666677666666544  468889999999999999999999999 9999999988776


Q ss_pred             HHHHHHHHhhccCCCCCCCCCccccccccccccchhhHHHHHHHHHHHHHhcCccccccccccccCCCCCCCchHHHhHH
Q 008231          111 ALVVGLLTSATSIPSMRPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKAMI  190 (573)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~  190 (573)
                      +++.+++.++...                       .+++.++++|++.|++.+...+...++++|++|+++      |+
T Consensus        88 ~~~~~~~~~~~~~-----------------------~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~------r~  138 (1146)
T PRK08633         88 VGLTLLIVLAYYL-----------------------GWFWLAFAVTFLLGAQSAIYSPAKYGIIPELVGKEN------LS  138 (1146)
T ss_pred             HHHHHHHHHHHHH-----------------------ccHHHHHHHHHHHHHHHHhhchHHHhhhHHhcCccc------ch
Confidence            6665554443110                       257789999999999999999999999999999988      99


Q ss_pred             HHHHHHHHHHHhhhHHHHHHhhhhhcc--------c-chhHHHHHHHHHHHHHHHHHHhcCccccccCCCCCchhHHHHH
Q 008231          191 FFFNRFYFAISIGSLFAVIVLVYVQDN--------V-GRGWGYGISAGTMVVAAAILLIGTPWYRFKKPRGSPLTVIWRV  261 (573)
Q Consensus       191 ~~~~~~~~~~~ig~~~~~~~~~~l~~~--------~-g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (573)
                      +++++...+.++|.++|+++++++.+.        + +|.+.+.+..+...+..+++.+..++.+...+....       
T Consensus       139 ~~~~~~~~~~~ig~~lg~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------  211 (1146)
T PRK08633        139 RANGLLEAFTIVAILAGTALFSFLFESVNGNTPSEILGRIAPAGLVLLAVAVLGLIFAYRLPKVPAAAPEVFD-------  211 (1146)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccccccchHHHHHHHHHHHHHHHHHHhcCcCCCCCCccccc-------
Confidence            999999999999999999999999875        2 344444333332222222222222322111100000       


Q ss_pred             HHHHHhccCCCCCCCCCcchhcccccCCCCCccchhhhhhhhhhhhhhccccCCcccccchhhHHHHHHHHh-HHHHHHH
Q 008231          262 LLLAWKKRSHPYPDHPSLLNEYQNAKVPHTEKFKCLDKAAIIEDNAVANENKNNSWIVSTVTEVEEVKMVLK-LLPIWAT  340 (573)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~  340 (573)
                                                  ....... ..  ..           ..+     ....+.+.+.. .+...+.
T Consensus       212 ----------------------------~~~~~~~-~~--~~-----------~~~-----~~l~~~~~~~~~~~~~~~~  244 (1146)
T PRK08633        212 ----------------------------KKKYLFP-KL--LW-----------RNL-----KLLRSDRVLWLAIIGLSYF  244 (1146)
T ss_pred             ----------------------------ccccccH-HH--HH-----------HHH-----HHHhcCcHHHHHHHHHHHH
Confidence                                        0000000 00  00           000     00001111111 1111111


Q ss_pred             HHHHHHHhhcccchhhhhhhcccccccccee-cccccchhhHHHHHHHHHhhhhhhhhhhcccccccCCCchHHHHHHHH
Q 008231          341 CILFWTVYSQMTTFTVEQATFMNRKIGSFTV-PSGSLSAFLFITILLFTSLNEKVFVPLARKITHSIQGMTSLQRVGTGL  419 (573)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~  419 (573)
                      ....+.....++.++.. ..+.+      .. ..+.+.....++.++...+.+++.++..++           ..+.++.
T Consensus       245 ~~~~~~~~~~~~~~~~~-~~g~s------~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~-----------~~~~~~~  306 (1146)
T PRK08633        245 WFISQLAQANFPAYAKE-VLGLD------NTFQVQYLLAASAIGIGIGSLLAGRLSGRHIEL-----------GLVPLGA  306 (1146)
T ss_pred             HHHHHHHHHhhHHHHHH-HhCCC------cHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEc-----------cchhHHH
Confidence            11111111112111111 11111      11 233445555566666666666665443222           1245555


Q ss_pred             HHHHHHHHHHHHHHHHHHhhcccCCcccchhHHHHHHHHHHHHHHhhhhhhhheeecccCchhHHHHHHHHHHHHHHHHH
Q 008231          420 IFSVIAMIVSAVIEQQRRETSVQKHIQISAFWLVPQYFLVGAGEAFVYVGQLEFFIREGPERMKSMSTGLFLSAISMGMF  499 (573)
Q Consensus       420 ~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~lv~~~~l~g~~~~~~~~~~~~~~~~~~p~~~rg~~~gi~~~~~~lg~~  499 (573)
                      ++++++++++.+..              +.+++++..++.|++.++..+...+++.+.+|++.||+++|+.++...+|..
T Consensus       307 ~~~~~~~~~~~~~~--------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~  372 (1146)
T PRK08633        307 LGLALSLFLLPTAP--------------SLASVLVLFFLFGFSAGLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGML  372 (1146)
T ss_pred             HHHHHHHHHHHHhh--------------hHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHH
Confidence            66655655554431              3445566778888888888888899999999999999999999999999998


Q ss_pred             HHHHHHHHHh
Q 008231          500 VSSMLVSIVD  509 (573)
Q Consensus       500 ig~~~~~~i~  509 (573)
                      +++.+.+.+.
T Consensus       373 ~~~~~~~~l~  382 (1146)
T PRK08633        373 LFLALTTLFS  382 (1146)
T ss_pred             HHHHHHHHHH
Confidence            8877766554

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=99.88  E-value=8.9e-21  Score=197.22  Aligned_cols=160  Identities=18%  Similarity=0.098  Sum_probs=135.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHH
Q 008231           34 AAGLILGTELSERICAMGISMNLVTYLVGDLHLSSAKSATIVTNFMGTLNLLGLLGGFLADAKLGRYLTVAIFASVTALV  113 (573)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~  113 (573)
                      ..+...+..+....+.+...+.+|.++++++|+|..+.+++.+.+.++..++++++|+++||+ |||+++.++.++.+++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~i~   80 (366)
T TIGR00886         2 NLFFSWFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKF-GPRYTTTLSLLLLAIP   80 (366)
T ss_pred             chHHHHHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHHH
Confidence            345666677777777777778888789999999999999999999999999999999999998 9999999999999999


Q ss_pred             HHHHHhhccCCCCCCCCCccccccccccccchhhHHHHHHHHHHHHHhcCccccccccccccCCCCCCCchHHHhHHHHH
Q 008231          114 VGLLTSATSIPSMRPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKAMIFFF  193 (573)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  193 (573)
                      .++++++.                         .+.+.++++|+++|++.+.. +...++++|++|+++      |+++.
T Consensus        81 ~~~~~~~~-------------------------~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~------r~~~~  128 (366)
T TIGR00886        81 CLWAGLAV-------------------------QSYSVLLLLRLFIGIAGGSF-ASCMPWISFFFPKKI------QGTAL  128 (366)
T ss_pred             HHHHHHHh-------------------------hhHHHHHHHHHHHHHhchhh-HhHHHHHHHhcCHhh------hhHHH
Confidence            98888762                         15778889999999986654 556789999999888      99999


Q ss_pred             HHHHHHHHhhhHHHHHHhhhhhc----------ccchhHHHHH
Q 008231          194 NRFYFAISIGSLFAVIVLVYVQD----------NVGRGWGYGI  226 (573)
Q Consensus       194 ~~~~~~~~ig~~~~~~~~~~l~~----------~~g~~~~f~~  226 (573)
                      ++.....++|..+++.+++.+..          ..+||+.|++
T Consensus       129 ~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~w~~~~~~  171 (366)
T TIGR00886       129 GLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWGWAFVI  171 (366)
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHhcccccccccccchhHH
Confidence            99988888888888877776654          2489999843

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.88  E-value=1.6e-19  Score=195.39  Aligned_cols=388  Identities=11%  Similarity=0.033  Sum_probs=235.9

Q ss_pred             CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhHHHHHhhhcc----chhHH-H
Q 008231           29 TGGWLAAGLILGTELSERICAMGISMNLVTYLVGDLHLSSAKSATIVTNFMGTLNLLGLLGGFLADAKL----GRYLT-V  103 (573)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~----Grr~~-~  103 (573)
                      +.++|+.+.++...+......+...+.+|.++. +.|.+..+.+.. +...... ++.+++|+++||+.    |||+. +
T Consensus         8 ~~~~~~~~~~~~l~~~~gl~~~~~~~~l~~~l~-~~g~~~~~ig~~-~~~~~~~-~~~~l~gpl~Dr~~~~~~Grrr~~l   84 (491)
T PRK11010          8 IFQQPNSAILLILGFASGLPLALTSGTLQAWMT-VENIDLKTIGFF-SLVGQAY-VFKFLWSPLMDRYTPPFLGRRRGWL   84 (491)
T ss_pred             HHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCCHHHHHHH-HHHHHHH-HHHHHHHHHHHcccccCCCCchHHH
Confidence            334555677777777777777777788888877 459999999886 3333333 68899999999951    78875 6


Q ss_pred             HHHHHHHHHHHHHHHhhccCCCCCCCCCccccccccccccchhhHHHHHHHHHHHHHhcCccccccccccccCCCCCCCc
Q 008231          104 AIFASVTALVVGLLTSATSIPSMRPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDP  183 (573)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~  183 (573)
                      ..+.++.+++...+++...                       ..+++.+.+.+++.+++.+...+...++..|++|+++ 
T Consensus        85 l~~~i~~~~~~~~~a~~~~-----------------------~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~-  140 (491)
T PRK11010         85 LATQLLLLVAIAAMGFLEP-----------------------GTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEE-  140 (491)
T ss_pred             HHHHHHHHHHHHHHHHcCC-----------------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhh-
Confidence            5777777777777766421                       1357778888999999999999999999999999888 


Q ss_pred             hHHHhHHHHHHHHHHHHHhhhHHHHHHhhhhhc-ccchhHHHHHHHHHHHHHHHHHHhcCccccccCCCCCchhHHHHHH
Q 008231          184 KEEKAMIFFFNRFYFAISIGSLFAVIVLVYVQD-NVGRGWGYGISAGTMVVAAAILLIGTPWYRFKKPRGSPLTVIWRVL  262 (573)
Q Consensus       184 ~~~~~r~~~~~~~~~~~~ig~~~~~~~~~~l~~-~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (573)
                           |+++.++...+.++|..+++.+++++.+ ..|||.+|++.++..++..+..++ .|+.+..+++.+...      
T Consensus       141 -----rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~GWr~~f~i~a~l~ll~~l~~~~-~~e~~~~~~~~~~~~------  208 (491)
T PRK11010        141 -----RGAGAAISVLGYRLAMLVSGGLALWLADRYLGWQGMYWLMAALLIPCIIATLL-APEPTDTIPVPKTLE------  208 (491)
T ss_pred             -----hHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHh-cCCCccccccccchh------
Confidence                 9999999999999999999999999988 579999999887766655444333 232111000000000      


Q ss_pred             HHHHhccCCCCCCCCCcchhcccccCCCCCccchhhhhhhhhhhhhhccccCCcccccchhhHHHHHHHHhHHHHHHHHH
Q 008231          263 LLAWKKRSHPYPDHPSLLNEYQNAKVPHTEKFKCLDKAAIIEDNAVANENKNNSWIVSTVTEVEEVKMVLKLLPIWATCI  342 (573)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  342 (573)
                                                   +  +..+                 ++   .+ ..++.+........+....
T Consensus       209 -----------------------------~--~~~~-----------------~l---~~-~~~~~~~~~~ll~~~l~~~  236 (491)
T PRK11010        209 -----------------------------Q--AVVA-----------------PL---RD-FFGRNNAWLILLLIVLYKL  236 (491)
T ss_pred             -----------------------------h--hHHH-----------------HH---HH-HHcCcCHHHHHHHHHHHHH
Confidence                                         0  0000                 00   00 0001111111111111122


Q ss_pred             HHHHHhhcccchhhhhhhccccccccceecccccc-hhhHHHHHHHHHhhhhhhhhhhcccccccCCCchHHHHHHHHHH
Q 008231          343 LFWTVYSQMTTFTVEQATFMNRKIGSFTVPSGSLS-AFLFITILLFTSLNEKVFVPLARKITHSIQGMTSLQRVGTGLIF  421 (573)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~  421 (573)
                      .........++++.. ..+.+..      ..+.+. ....++.++...+.+++.+|+.+|+           .+..+.++
T Consensus       237 ~~~~~~~~~~~~l~~-~~G~s~~------~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~-----------~l~i~~~l  298 (491)
T PRK11010        237 GDAFAMSLTTTFLIR-GVGFDAG------EVGLVNKTLGLLATIVGALYGGILMQRLSLFR-----------ALMIFGIL  298 (491)
T ss_pred             HHHHHHHHHHHHHHH-hcCCCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH-----------HHHHHHHH
Confidence            222222222222221 1122211      122333 2334555666677777776665442           13333343


Q ss_pred             HHHHHHHHHHHHHHHHhhcccCCcccchhHHHHHHHHHHHHHHhhhhhhhheeecccCchhHHHHHHHHHHHHHHHHHHH
Q 008231          422 SVIAMIVSAVIEQQRRETSVQKHIQISAFWLVPQYFLVGAGEAFVYVGQLEFFIREGPERMKSMSTGLFLSAISMGMFVS  501 (573)
Q Consensus       422 ~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~lv~~~~l~g~~~~~~~~~~~~~~~~~~p~~~rg~~~gi~~~~~~lg~~ig  501 (573)
                      .+++.+.+.....        .  ..+.+.+....++..+..++..+..+++..+..|++.+++..|+.+....+|..++
T Consensus       299 ~~l~~l~~~~l~~--------~--~~~~~~l~~~~~l~~~~~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~  368 (491)
T PRK11010        299 QGVSNAGYWLLSI--------T--DKNLYSMGAAVFFENLCGGMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRVYV  368 (491)
T ss_pred             HHHHHHHHHHHHh--------c--cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHH
Confidence            3333322221110        0  11233334344554545555556667888888999999999999999999999988


Q ss_pred             HHHHHHHhhhhccCccccccccchhhHHHHHHHHHHHHHHHHHHHH
Q 008231          502 SMLVSIVDKITNKHWLRSNLNKGKLNNFYWLLAVLGLLNFMVFLFF  547 (573)
Q Consensus       502 ~~~~~~i~~~~~~~w~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~  547 (573)
                      +.+.|++.+..  |          +...|.+.+++++++.+..+..
T Consensus       369 ~~~~G~l~~~~--G----------~~~~f~~~~~~~l~~l~~~~~~  402 (491)
T PRK11010        369 GPVAGWFVEAH--G----------WPTFYLFSVAAAVPGLLLLLVC  402 (491)
T ss_pred             HHHHHHHHHHh--C----------hHHHHHHHHHHHHHHHHHHHHH
Confidence            88999887643  1          3456777777777766655544

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.88  E-value=2.3e-20  Score=222.37  Aligned_cols=345  Identities=12%  Similarity=0.027  Sum_probs=203.5

Q ss_pred             HHhhhcCCCc-hhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHH--HHHHHHHHHHhhccCCCCCCCCCcccc
Q 008231           59 YLVGDLHLSS-AKSATIVTNFMGTLNLLGLLGGFLADAKLGRYLTVAIFAS--VTALVVGLLTSATSIPSMRPPQCDDYR  135 (573)
Q Consensus        59 yl~~~~~~s~-~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (573)
                      .+..+.+.+. ...+++.+++.+.+.++++++|+++||+ |||+++.....  +......+..+..              
T Consensus        41 ~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~G~laDr~-~rk~~~~~~~~~~~~~~~~~~~~~~~--------------  105 (1140)
T PRK06814         41 GLSGALGAYNNALVTLAGAVFILPFFIFSALAGQLADKY-DKAKLAKILKFAEIGIAALAIYGFHL--------------  105 (1140)
T ss_pred             HhccccccchHHHHHHHHHHHHHHHHHHhhhHHhhhhhc-cHHHHHHHHHHHHHHHHHHHHHHHHH--------------
Confidence            3444444433 3467788899999999999999999999 99998644222  2222222222211              


Q ss_pred             ccccccccchhhHHHHHHHHHHHHHhcCccccccccccccCCCCCCCchHHHhHHHHHHHHHHHHHhhhHHHHHHhhhhh
Q 008231          136 RKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKAMIFFFNRFYFAISIGSLFAVIVLVYVQ  215 (573)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~~~~~l~  215 (573)
                                 .+++.++++|+++|++.+++.|...+++.|++|+++      |++++++.+++.++|.++||+++|++.
T Consensus       106 -----------~s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~------~~~a~~~~~~~~~ig~~igp~l~g~l~  168 (1140)
T PRK06814        106 -----------NSVPLLFAALFLMGIHSALFGPIKYSILPDHLNKDE------LLGANALVEAGTFIAILLGTIIGGLAT  168 (1140)
T ss_pred             -----------hhHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCccc------cchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence                       267899999999999999999999999999999988      999999999999999999999999999


Q ss_pred             cccchhHHHHHHHHHHHHHHHHHHhcCccccccCCCCCchhHHHHHHHHHHhccCCCCCCCCCcchhcccccCCCCCccc
Q 008231          216 DNVGRGWGYGISAGTMVVAAAILLIGTPWYRFKKPRGSPLTVIWRVLLLAWKKRSHPYPDHPSLLNEYQNAKVPHTEKFK  295 (573)
Q Consensus       216 ~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (573)
                      +..||++.|++.++..++++++.++ .++.+..++......                                      .
T Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~--------------------------------------~  209 (1140)
T PRK06814        169 ISGNFVILVALLMGIAVLGWLASLF-IPKTGNAAPDLKIDR--------------------------------------N  209 (1140)
T ss_pred             hccccHHHHHHHHHHHHHHHHHHhh-CCCCCCCCCCCeecc--------------------------------------c
Confidence            9999999885444444443333332 222111100000000                                      0


Q ss_pred             hhhhhhhhhhhhhhccccCCcccccchhhHHHHHHHHh-HHHHHHHHHHHHHHhhcccchhhhhhhccccccccceeccc
Q 008231          296 CLDKAAIIEDNAVANENKNNSWIVSTVTEVEEVKMVLK-LLPIWATCILFWTVYSQMTTFTVEQATFMNRKIGSFTVPSG  374 (573)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  374 (573)
                      .......             .+     ....+.+.+.. .+..++..........+++.+.. ...+.+      ....+
T Consensus       210 ~~~~~~~-------------~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~~g~~------~~~~g  264 (1140)
T PRK06814        210 IIRSTIT-------------LL-----KYAKADKRIWLAILGISWFWLVGAVVLSQLPLLAK-ETLGGD------ENVAT  264 (1140)
T ss_pred             hHHHHHH-------------HH-----HHHhcCchHHHHHHHHHHHHHHHHHHHHHhHHHHH-HHcCCc------hHHHH
Confidence            0000000             00     00001111111 11111222222222222222221 111111      11234


Q ss_pred             ccchhhHHHHHHHHHhhhhhhhhhhcccccccCCCchHHHHHHHHHHHHHHHHHHHHHHHH-HHhhcc-----cCCcccc
Q 008231          375 SLSAFLFITILLFTSLNEKVFVPLARKITHSIQGMTSLQRVGTGLIFSVIAMIVSAVIEQQ-RRETSV-----QKHIQIS  448 (573)
Q Consensus       375 ~~~~~~~~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~i~~i~~~~~~~~-~~~~~~-----~~~~~~~  448 (573)
                      .+.+...++.++...+.+++.++..++.           .+..+.++.+++.+.+.+.... ......     .-....+
T Consensus       265 ~~~~~~~~g~~ig~~~~g~l~~~~~~~~-----------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  333 (1140)
T PRK06814        265 LFLAVFSVGVAVGSFLASKLSEGRITLL-----------YVPIGALLMGLFGLDLAFASSSVPAEPAQLKSILVFLSKRH  333 (1140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCceeee-----------eehHHHHHHHHHHHHHHhcccccccccccccchhhhhcccc
Confidence            4556666777777777777743222111           1233333333333322221000 000000     0000124


Q ss_pred             hhHHHHHHHHHHHHHHhhhhhhhheeecccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008231          449 AFWLVPQYFLVGAGEAFVYVGQLEFFIREGPERMKSMSTGLFLSAISMGMFVSSMLVSIVDK  510 (573)
Q Consensus       449 ~~~lv~~~~l~g~~~~~~~~~~~~~~~~~~p~~~rg~~~gi~~~~~~lg~~ig~~~~~~i~~  510 (573)
                      .+.+++..++.|++.++..+...+++.+.+|++.+|+++|+.++...+++.+++.+.+.+.+
T Consensus       334 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~  395 (1140)
T PRK06814        334 GWRILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQA  395 (1140)
T ss_pred             cHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45566777888999999998999999999999999999999999999999999999998864

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=99.88  E-value=8.8e-20  Score=198.66  Aligned_cols=405  Identities=14%  Similarity=0.027  Sum_probs=234.9

Q ss_pred             hhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCccccccccccccchhhHH
Q 008231           70 KSATIVTNFMGTLNLLGLLGGFLADAKLGRYLTVAIFASVTALVVGLLTSATSIPSMRPPQCDDYRRKHHQCIEANGKQL  149 (573)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (573)
                      +.+++.+.+.++..++.++.|+++|++ |||++++++.+++.+|.++++++                          ++.
T Consensus        90 ~~s~~~s~~~lga~~g~l~~g~l~d~~-GRk~~l~~~~~~~~iG~ii~~~a--------------------------~~~  142 (513)
T KOG0254|consen   90 RQGLLTSILNLGALVGSLLAGRLGDRI-GRKKTLLLAVVLFLIGAIIIALA--------------------------PSW  142 (513)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHh--------------------------hhH
Confidence            458999999999999999999999998 99999999999999999999998                          478


Q ss_pred             HHHHHHHHHHHhcCccccccccccccCCCCCCCchHHHhHHHHHHHHHHHHHhhhHHHHHHhhhhhcc-cchhHHHHHHH
Q 008231          150 AMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKAMIFFFNRFYFAISIGSLFAVIVLVYVQDN-VGRGWGYGISA  228 (573)
Q Consensus       150 ~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~~~~~l~~~-~g~~~~f~~~~  228 (573)
                      .+++++|++.|+|.|+.....+.+++|..|++.      |+...+..+...++|..++..++....+. ++||..+++..
T Consensus       143 ~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~~------RG~l~~~~~l~~~~Gi~~~~~~~~~~~~~~~~Wr~~~~~~~  216 (513)
T KOG0254|consen  143 YQLIVGRILTGLGVGGASVLAPVYISEIAPAHI------RGTLVSLYQLFITIGILLGYCINYGTSKVYAGWRIPLGLAL  216 (513)
T ss_pred             HHHHHHHHHhccchhhhhhcchhhHhhcCChhh------hHHHHHHHHHHHHHHHHHHHHHhhhhccCCccHHHHHHHHH
Confidence            899999999999999999999999999999988      99999999999999999995544444332 48998888877


Q ss_pred             HHHHHHHHHHHhcCccccccCCCCCchhHHHHHHHHHHhccCCCCCCCCCcchhcccccCCCCCccchhhhhhhhhhhhh
Q 008231          229 GTMVVAAAILLIGTPWYRFKKPRGSPLTVIWRVLLLAWKKRSHPYPDHPSLLNEYQNAKVPHTEKFKCLDKAAIIEDNAV  308 (573)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (573)
                      +..++..+. .+..|+.++.--+.....+..+.+.......   ..+...+...                 .+.......
T Consensus       217 i~~~~~~~~-~~~~pesp~~L~~~g~~~~a~~~l~~l~g~~---~~~~~~~~~~-----------------~~~~~~~~~  275 (513)
T KOG0254|consen  217 IPAVILALG-MLFLPESPRWLIEKGRLEEAKRSLKRLRGLS---PEDVEVELEL-----------------LKIKLLVEA  275 (513)
T ss_pred             HHHHHHHHH-HHhCCCChHHHHHcCChHHHHHHHHHHhCCC---CcchHHHHHH-----------------HHHHHHHhh
Confidence            766665555 4444433221111112222222221111100   0000000000                 000000000


Q ss_pred             hccccCCcccccchhhHHHHHHHHhHHHHHHHHHHHHHHhhcccchhhhhhhccccccccceecccccchhhHHHHHHHH
Q 008231          309 ANENKNNSWIVSTVTEVEEVKMVLKLLPIWATCILFWTVYSQMTTFTVEQATFMNRKIGSFTVPSGSLSAFLFITILLFT  388 (573)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  388 (573)
                      ...+....|+++...  ..+++....    +....+..+ ........+....+...  +...+......+..+..++..
T Consensus       276 ~~~~~~~~~~~l~~~--~~~~~~~i~----~~l~~fqq~-tG~~~~~~Y~~~if~~~--g~~~~~~~~~~~~~~v~~~~t  346 (513)
T KOG0254|consen  276 EVAEGKASWGELFSP--KVRKRLIIG----LLLQLFQQL-TGINYVFYYSTTIFKSA--GLKSDTFLASIILGVVNFLGT  346 (513)
T ss_pred             hcccccccHHHhcCc--chHHHHHHH----HHHHHHHHH-hCCceEEeehHHHHHhc--CCCCchHHHHHHHHHHHHHHH
Confidence            000001112111110  111111111    111111111 11111000000001111  111111122222233333333


Q ss_pred             HhhhhhhhhhhcccccccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCcccchhHHHHHHHHHHHHHHhhhh
Q 008231          389 SLNEKVFVPLARKITHSIQGMTSLQRVGTGLIFSVIAMIVSAVIEQQRRETSVQKHIQISAFWLVPQYFLVGAGEAFVYV  468 (573)
Q Consensus       389 ~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~lv~~~~l~g~~~~~~~~  468 (573)
                      .+...++|+.+||.           .+..|...+.+++++++..........+ ......+..++..+++.........|
T Consensus       347 ~~~~~lvd~~gRr~-----------lll~s~~~m~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~f~~g~g~  414 (513)
T KOG0254|consen  347 LVATYLVDRFGRRK-----------LLLFGAAGMSICLVILAVVGVFALYYPN-SSKGAGWLAIVFLCLFIFSFAIGWGP  414 (513)
T ss_pred             HHHHHHHHHhccHH-----------HHHHhHHHHHHHHHHHHHHHHHhccCCC-cccchhHHHHHHHHHHHHHHhccccc
Confidence            33456666666553           2788888888888877765432111000 01112233333344444444455568


Q ss_pred             hhhheeecccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCccccccccchhhHHHHHHHHHHHHHHH-HHHHH
Q 008231          469 GQLEFFIREGPERMKSMSTGLFLSAISMGMFVSSMLVSIVDKITNKHWLRSNLNKGKLNNFYWLLAVLGLLNFM-VFLFF  547 (573)
Q Consensus       469 ~~~~~~~~~~p~~~rg~~~gi~~~~~~lg~~ig~~~~~~i~~~~~~~w~~~~~~~~~~~~~~~~~a~~~~l~~~-~~~~~  547 (573)
                      ..+.+..|.+|.+.|+++.++....+++.+++-........+..            .....|..+++++.+... +.+++
T Consensus       415 v~w~~~sEifp~~~r~~~~s~~~~~n~~~~~~v~~~~~~~~~~~------------~~~~~f~~f~~~~~~~~~~fv~~~  482 (513)
T KOG0254|consen  415 VPWVIVSEIFPLRLRSKGASLAVAVNWLWNFLISFFFPFITEAL------------GIGGTFGYFGGICLLSLIIFVFFF  482 (513)
T ss_pred             chhhhhhccCcHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhc------------cccchHHHHHHHHHHHHHHHheEE
Confidence            88889999999999999999999999888887766665554311            012455666666666666 67888


Q ss_pred             HhhcchhhhccccC
Q 008231          548 AMKHQYNVQHRVKG  561 (573)
Q Consensus       548 ~~~~~~~~~~~~~~  561 (573)
                      .||+|+++.++.+.
T Consensus       483 ~pETkg~sleei~~  496 (513)
T KOG0254|consen  483 VPETKGLTLEEINE  496 (513)
T ss_pred             cccCCCCcHHHHHH
Confidence            99999988776543

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.87  E-value=2.8e-20  Score=195.06  Aligned_cols=397  Identities=13%  Similarity=0.053  Sum_probs=235.8

Q ss_pred             hhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCccccccccccccchhhHHH
Q 008231           71 SATIVTNFMGTLNLLGLLGGFLADAKLGRYLTVAIFASVTALVVGLLTSATSIPSMRPPQCDDYRRKHHQCIEANGKQLA  150 (573)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (573)
                      -+.+++.+.+++.+++.+.|+++||+ |||..++++.++..++..++.++...                       +...
T Consensus        62 wS~~vs~f~iG~~~Gs~~~~~la~~~-GRK~~l~~~~~l~~~~~~~~~~s~~~-----------------------~~~e  117 (485)
T KOG0569|consen   62 WSLIVSIFFIGGMIGSFSSGLLADRF-GRKNALLLSNLLAVLAALLMGLSKSA-----------------------PSFE  117 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhh-cchHHHHHHHHHHHHHHHHHHHHHHh-----------------------hhHH
Confidence            35677889999999999999999999 99999999999888888777775432                       3677


Q ss_pred             HHHHHHHHHHhcCccccccccccccCCCCCCCchHHHhHHHHHHHHHHHHHhhhHHHHHHhh-h-hhcccchhHHHHHHH
Q 008231          151 MLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKAMIFFFNRFYFAISIGSLFAVIVLV-Y-VQDNVGRGWGYGISA  228 (573)
Q Consensus       151 ~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~~~~-~-l~~~~g~~~~f~~~~  228 (573)
                      +++++|++.|+..|......+-++.|..|++.      ||..-.....+..+|..++..++. . +...-.|++.+.+..
T Consensus       118 ~li~GR~i~Gl~~gl~~~~~pmyl~E~sP~~~------RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~~  191 (485)
T KOG0569|consen  118 MLILGRLIVGLACGLSTGLVPMYLTEISPKNL------RGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFPL  191 (485)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHhhcChhhh------ccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHHH
Confidence            89999999999999999999999999999999      999999999999999999976663 2 334456988888777


Q ss_pred             HHHHHHHHHHHhcCccccccC-CCCCchhHHHHHHHHHHhccCCCCCCCCCcchhcccccCCCCCccchhhhhhhhhhhh
Q 008231          229 GTMVVAAAILLIGTPWYRFKK-PRGSPLTVIWRVLLLAWKKRSHPYPDHPSLLNEYQNAKVPHTEKFKCLDKAAIIEDNA  307 (573)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (573)
                      +.+++..+.+.+ .||.++.- .++.+..+..+.+.... ..+...    .+..+.               ..+.   ..
T Consensus       192 i~~~~~l~~l~~-~PESPk~Ll~~k~~~~~A~~sl~~y~-G~~~~~----~~~e~~---------------~~e~---~~  247 (485)
T KOG0569|consen  192 IPALLQLALLPF-LPESPKYLLIKKGDEEEARKALKFYR-GKEDVE----AEIEEM---------------LREI---EE  247 (485)
T ss_pred             HHHHHHHHHHhc-CCCCcchHHHHcCCHHHHHHHHHHHh-CCCcch----hHHHHH---------------HHHH---HH
Confidence            766655544333 34332211 01222222222221111 000000    000000               0000   00


Q ss_pred             hhccc-cCCc-ccccchhhHHHHHHHHhHHHHHHHHHHHHHHhhcccchhhhhhhccccccccceec-ccccchhhHHHH
Q 008231          308 VANEN-KNNS-WIVSTVTEVEEVKMVLKLLPIWATCILFWTVYSQMTTFTVEQATFMNRKIGSFTVP-SGSLSAFLFITI  384 (573)
Q Consensus       308 ~~~~~-~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  384 (573)
                      .++++ +..+ ++.++..   ..|+-+..    .........+........+ ....-.+. |+..+ +.+.........
T Consensus       248 ~~~~~~~~~sl~~~~~~~---~lR~~~~i----~~~v~~~qq~sGi~ai~~Y-st~i~~~a-G~~~~~a~~an~~~g~v~  318 (485)
T KOG0569|consen  248 EELEKKKQISLRQLLKNP---TLRRPLLI----GIVVSFAQQFSGINAIFFY-STSIFKTA-GFTPEEAQYANLGIGIVN  318 (485)
T ss_pred             hccccccCCcHHHHhcCc---chhHHHHH----HHHHHHHHHhcCcceeHHH-HHHHHHHc-CCCHHHHHHHHHHHHHHH
Confidence            00000 1111 1111111   11111111    0011111111111111110 00000000 11111 222333334444


Q ss_pred             HHHHHhhhhhhhhhhcccccccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCcccchhHHHHHHHHHHHHHH
Q 008231          385 LLFTSLNEKVFVPLARKITHSIQGMTSLQRVGTGLIFSVIAMIVSAVIEQQRRETSVQKHIQISAFWLVPQYFLVGAGEA  464 (573)
Q Consensus       385 l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~lv~~~~l~g~~~~  464 (573)
                      ++......+++|+.+||..           ++.+..++.+..+++.........     ..+...+..+.+.+++.+++.
T Consensus       319 ~~~t~~~~~lid~~gRRpL-----------ll~~~~~~~~~~~~~~~~~~l~~~-----~~~~~~y~~i~~~~~~~~~f~  382 (485)
T KOG0569|consen  319 LLSTLVSPFLIDRLGRRPL-----------LLISLSLMAVALLLMSIALFLSNS-----FGSWLSYLCIAAIFLFIISFA  382 (485)
T ss_pred             HHHHHHHHHHHHhcCCcHH-----------HHHHHHHHHHHHHHHHHHHHHHHH-----hhhHHHHHHHHHHHHHHHhhh
Confidence            5555556666777676642           566666666665555544322111     001111122344444444444


Q ss_pred             h-hhhhhhheeecccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCccccccccchhhHHHHHHHHHHHHHHHH
Q 008231          465 F-VYVGQLEFFIREGPERMKSMSTGLFLSAISMGMFVSSMLVSIVDKITNKHWLRSNLNKGKLNNFYWLLAVLGLLNFMV  543 (573)
Q Consensus       465 ~-~~~~~~~~~~~~~p~~~rg~~~gi~~~~~~lg~~ig~~~~~~i~~~~~~~w~~~~~~~~~~~~~~~~~a~~~~l~~~~  543 (573)
                      . ..|..+-+.+|++|++.|..++++....+++.+++.....+.+.+..+             .++|..+.+.+++.++.
T Consensus       383 ~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g-------------~~~filF~i~~~~~~i~  449 (485)
T KOG0569|consen  383 IGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIG-------------PYVFILFVIPLAIFLIY  449 (485)
T ss_pred             cCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------------chhhHHHHHHHHHHHHH
Confidence            3 468899999999999999999999999999999999999998886542             25788889999999999


Q ss_pred             HHHHHhhcchhhhccc
Q 008231          544 FLFFAMKHQYNVQHRV  559 (573)
Q Consensus       544 ~~~~~~~~~~~~~~~~  559 (573)
                      .++..||+|+|+..+.
T Consensus       450 ~~~~lPETkgr~~~eI  465 (485)
T KOG0569|consen  450 LYRYLPETKGRTPYEI  465 (485)
T ss_pred             HHHhCcccCCCCHHHH
Confidence            9999999998875543

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.87  E-value=1.7e-19  Score=189.28  Aligned_cols=336  Identities=9%  Similarity=0.010  Sum_probs=203.7

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhHHHHHhhhccchh----HHHHHHHHHHHHHHHHHH
Q 008231           43 LSERICAMGISMNLVTYLVGDLHLSSAKSATIVTNFMGTLNLLGLLGGFLADAKLGRY----LTVAIFASVTALVVGLLT  118 (573)
Q Consensus        43 ~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr----~~~~~~~~~~~~~~~~~~  118 (573)
                      +....++..+.+++|.|++ ++|.|..+.|++.+.+.+...++++++|+++||+ |||    +.+.++..+.   ...+.
T Consensus        14 ~~~~~~~g~~~p~l~~~l~-~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~-g~~~~~~~~~~~~~~~~---~~~~~   88 (382)
T PRK11128         14 FGYFFAYGVFLPFWSVWLK-GQGYTPETIGLLLGAGLVARFLGSLLIAPRVKDP-SQLIPALRLLALLTLLF---AVAFW   88 (382)
T ss_pred             HHHHHHHHHHhhhHHHHHH-hcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhh-cchHHHHHHHHHHHHHH---HHHHH
Confidence            3334555667788889985 6899999999999999999999999999999998 984    3332222111   11111


Q ss_pred             hhccCCCCCCCCCccccccccccccchhhHHHHHHHHHHHHHhcCccccccccccccCCCCCCCchHHHhHHHHHHHHHH
Q 008231          119 SATSIPSMRPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKAMIFFFNRFYF  198 (573)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~  198 (573)
                      ...                         ++.+.+++.|++.|++.+...|...++..++  +++      |+++++..+.
T Consensus        89 ~~~-------------------------~~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~--~~~------~~~a~~~~~~  135 (382)
T PRK11128         89 FGA-------------------------HSFWLLFVAIGLFNLFFSPLVPLTDALANTW--QKQ------IGLDYGKVRL  135 (382)
T ss_pred             Hhc-------------------------ccHHHHHHHHHHHHHHHcccccHHHHHHHHH--Hhh------ccCCcchHHH
Confidence            211                         3677888899999999888888877777765  333      7888888888


Q ss_pred             HHHhhhHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHHHHhcCccccccCCCCCchhHHHHHHHHHHhccCCCCCCCCC
Q 008231          199 AISIGSLFAVIVLVYVQDNVGRGWGYGISAGTMVVAAAILLIGTPWYRFKKPRGSPLTVIWRVLLLAWKKRSHPYPDHPS  278 (573)
Q Consensus       199 ~~~ig~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (573)
                      ..++|..+||++++++.+.+|||.+|++.++..++..+.. +..|+.   +++++..+                 +    
T Consensus       136 ~~~lg~~igp~lgg~l~~~~g~~~~f~~~~~~~~~~~~~~-~~~~~~---~~~~~~~~-----------------~----  190 (382)
T PRK11128        136 WGSIAFVIGSALTGKLVSWFGEQAILWILTAGVASMLLGQ-LLRPTI---MPQGESRQ-----------------Q----  190 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHH-HccCCC---CCcccccc-----------------c----
Confidence            8999999999999999999999999987765444433322 222221   11100000                 0    


Q ss_pred             cchhcccccCCCCCccchhhhhhhhhhhhhhccccCCcccccchhhHHHHHHHHhH-HHHHHHHHHHHHHhhcccchhhh
Q 008231          279 LLNEYQNAKVPHTEKFKCLDKAAIIEDNAVANENKNNSWIVSTVTEVEEVKMVLKL-LPIWATCILFWTVYSQMTTFTVE  357 (573)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~  357 (573)
                                 ..+.                    ..     ...+..+.+..... ...++........+...+.+. .
T Consensus       191 -----------~~~~--------------------~~-----~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~  233 (382)
T PRK11128        191 -----------ESAG--------------------WP-----AWKALLKEPTVWRFLLCVSLLQGSHAAYYGFSAIYW-Q  233 (382)
T ss_pred             -----------cccc--------------------cc-----hHHHHHcChhHHHHHHHHHHHHHHhHhHHHHHHHHH-H
Confidence                       0000                    00     00011111222221 111121222212222122111 1


Q ss_pred             hhhccccccccceecccccchhhHHHHHHHHHhhhhhhhhhhcccccccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008231          358 QATFMNRKIGSFTVPSGSLSAFLFITILLFTSLNEKVFVPLARKITHSIQGMTSLQRVGTGLIFSVIAMIVSAVIEQQRR  437 (573)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~i~~i~~~~~~~~~~  437 (573)
                      + .+.+      ....+.+..+..+..++...+.+++.+|..           ..+.+..+.++.+++++.+...+    
T Consensus       234 ~-~g~s------~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~-----------~~~~l~~~~~~~~~~~~~~~~~~----  291 (382)
T PRK11128        234 A-AGYS------ASTIGYLWSLGVVAEVLIFAFSNRLFRRWS-----------ARDLLLLSAICGVVRWGLMGSTT----  291 (382)
T ss_pred             H-CCCC------HhHHHHHHHHHHHHHHHHHHHHHHHHHHCC-----------HHHHHHHHHHHHHHHHHHHHhhh----
Confidence            1 1111      111233333444444555555555543332           22336667777777666554431    


Q ss_pred             hhcccCCcccchhHHHHHHHHHHHHHHhhhhhhhheeecccCchhHHHHHHHHH-HHHHHHHHHHHHHHHHHhhh
Q 008231          438 ETSVQKHIQISAFWLVPQYFLVGAGEAFVYVGQLEFFIREGPERMKSMSTGLFL-SAISMGMFVSSMLVSIVDKI  511 (573)
Q Consensus       438 ~~~~~~~~~~~~~~lv~~~~l~g~~~~~~~~~~~~~~~~~~p~~~rg~~~gi~~-~~~~lg~~ig~~~~~~i~~~  511 (573)
                                +.+++++..++.|++++...+....++.+. +++.+++.+++.+ ....+|..+|+.+.|.+.+.
T Consensus       292 ----------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~  355 (382)
T PRK11128        292 ----------ALPWLIVIQILHCGTFTVCHLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQH  355 (382)
T ss_pred             ----------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence                      445566677888999998888888888887 4555788999886 55678889999999999864

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.87  E-value=1.5e-19  Score=189.09  Aligned_cols=355  Identities=12%  Similarity=0.024  Sum_probs=205.8

Q ss_pred             HHHHHHHHHHHHHHHHHhhhcC--CCchhhhHHHHHH--H---HHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHH
Q 008231           44 SERICAMGISMNLVTYLVGDLH--LSSAKSATIVTNF--M---GTLNLLGLLGGFLADAKLGRYLTVAIFASVTALVVGL  116 (573)
Q Consensus        44 ~~~~~~~~~~~~l~~yl~~~~~--~s~~~~~~~~~~~--~---~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~  116 (573)
                      .+.++.+.+. +...++.++..  .++++.+.+.+..  .   +...+++++.|+++||+ |||+++..+.++..++..+
T Consensus         4 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~-g~r~~l~~~~~~~~~~~~~   81 (394)
T TIGR00883         4 VEWFDFYLYG-FAAVLVFHTFFPPSGDPLVALLATFATFAAGFLARPLGAIVFGHFGDRI-GRKKTLVITLLMMGIGTLL   81 (394)
T ss_pred             hhHHHHHHHH-HHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhh-hhHHHHHHHHHHHHHHHHH
Confidence            3444544333 45556665543  4456665555432  2   23346789999999998 9999999999999999999


Q ss_pred             HHhhccCCCCCCCCCccccccccccccchhhHHHHHHHHHHHHHhcCccccccccccccCCCCCCCchHHHhHHHHHHHH
Q 008231          117 LTSATSIPSMRPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKAMIFFFNRF  196 (573)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  196 (573)
                      ++++.+....                  .......++++|+++|++.+...+...+++.|++|+++      |++..++.
T Consensus        82 ~~~~~~~~~~------------------~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~  137 (394)
T TIGR00883        82 IGLLPSYATI------------------GIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGK------RGFYGSFQ  137 (394)
T ss_pred             HhhCCChhhh------------------HHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCccc------chHHHHHH
Confidence            8886532200                  00112357889999999999999999999999999988      99999999


Q ss_pred             HHHHHhhhHHHHHHhhhhh--------cccchhHHHHHHHHHHHHHHHHHHhcCccccccCCCCCchhHHHHHHHHHHhc
Q 008231          197 YFAISIGSLFAVIVLVYVQ--------DNVGRGWGYGISAGTMVVAAAILLIGTPWYRFKKPRGSPLTVIWRVLLLAWKK  268 (573)
Q Consensus       197 ~~~~~ig~~~~~~~~~~l~--------~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (573)
                      +.+..+|..+++.++..+.        +.++||++|.+.++..+++.+.... .++.++.+++               ++
T Consensus       138 ~~~~~~G~~i~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~---------------~~  201 (394)
T TIGR00883       138 QVGAPVGLLLAALTVLLLSYLLGDDALLEWGWRIPFLVSAVLVLIGLYLRRN-LEETPVFEKA---------------QE  201 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCHHHhhccchHHHHHHHHHHHHHHHHHHHh-cCCChhHHHH---------------Hh
Confidence            9999999999998876653        3578999998776655444332221 1211100000               00


Q ss_pred             cCCCCCCCCCcchhcccccCCCCCccchhhhhhhhhhhhhhccccCCcccccchhhHHHHH-HHHhHHH-HHHHHHHHHH
Q 008231          269 RSHPYPDHPSLLNEYQNAKVPHTEKFKCLDKAAIIEDNAVANENKNNSWIVSTVTEVEEVK-MVLKLLP-IWATCILFWT  346 (573)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~-~~~~~~~~~~  346 (573)
                      + . .+                 +                     ..++   . ...++.+ ....... .+......+.
T Consensus       202 ~-~-~~-----------------~---------------------~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (394)
T TIGR00883       202 K-H-KK-----------------K---------------------RGPI---R-ETLTKHRKPFLLGLGLVIATTTTFYL  237 (394)
T ss_pred             c-c-cc-----------------c---------------------cCCH---H-HHHHhchHHHHHHHHHHHHHHHHHHH
Confidence            0 0 00                 0                     0000   0 0011111 1211111 1111111111


Q ss_pred             HhhcccchhhhhhhccccccccceecccccchhhHHHHHHHHHhhhhhhhhhhcccccccCCCchHHHHHHHHHHHHHHH
Q 008231          347 VYSQMTTFTVEQATFMNRKIGSFTVPSGSLSAFLFITILLFTSLNEKVFVPLARKITHSIQGMTSLQRVGTGLIFSVIAM  426 (573)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~i~~  426 (573)
                      .....+.+.. +..+.+      ....+.......+..++..++.+++.+|+.+|+..          +..+.+....+.
T Consensus       238 ~~~~~~~~~~-~~~g~~------~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~----------~~~~~~~~~~~~  300 (394)
T TIGR00883       238 ITTYLPTYLT-QTLGLS------ANSALLVLMLSLILFFITIPLSGALSDRIGRRPVL----------IIFTVLAALLAV  300 (394)
T ss_pred             HHHHHHHHHH-HhcCCC------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHH----------HHHHHHHHHHHH
Confidence            1111211111 111111      11223334445556666677777777665544211          222222222222


Q ss_pred             HHHHHHHHHHHhhcccCCcccchhHHHHHHHHHHHHHHhhhhhhhheeecccCchhHHHHHHHH-HHHHHHHHHHHHHHH
Q 008231          427 IVSAVIEQQRRETSVQKHIQISAFWLVPQYFLVGAGEAFVYVGQLEFFIREGPERMKSMSTGLF-LSAISMGMFVSSMLV  505 (573)
Q Consensus       427 i~~~~~~~~~~~~~~~~~~~~~~~~lv~~~~l~g~~~~~~~~~~~~~~~~~~p~~~rg~~~gi~-~~~~~lg~~ig~~~~  505 (573)
                      .......          . ..+.+......++.+++.+...+..++++.|.+|++.|+++.++. +....+|..++|.+.
T Consensus       301 ~~~~~~~----------~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~  369 (394)
T TIGR00883       301 PLLMALL----------D-SGSFTLFFFLVLGLALIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIA  369 (394)
T ss_pred             HHHHHHh----------c-CCchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHH
Confidence            2211110          0 113444455567777777778888899999999999999999984 566778888999999


Q ss_pred             HHHhhhh
Q 008231          506 SIVDKIT  512 (573)
Q Consensus       506 ~~i~~~~  512 (573)
                      |.+.+..
T Consensus       370 g~l~~~~  376 (394)
T TIGR00883       370 AALVAMT  376 (394)
T ss_pred             HHHHHHc
Confidence            9987653

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>TIGR00896 CynX cyanate transporter

Probab=99.86  E-value=8.4e-20  Score=189.47  Aligned_cols=327  Identities=13%  Similarity=0.080  Sum_probs=208.1

Q ss_pred             HHHHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCcc
Q 008231           54 MNLVTYLVGDLHLSSAKSATIVTNFMGTLNLLGLLGGFLADAKLGRYLTVAIFASVTALVVGLLTSATSIPSMRPPQCDD  133 (573)
Q Consensus        54 ~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (573)
                      ..+.+.+.+++|+|..+.+++.+.+.++..++.++.|+++||+ |||+++.++..+..++.+.+ .+             
T Consensus        20 ~~~lp~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~-~~-------------   84 (355)
T TIGR00896        20 GPLLPQIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRF-GEERSVAAGLLLIAAGILIR-SA-------------   84 (355)
T ss_pred             cccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-CchHHHHHHHHHHHHHHHHH-Hh-------------
Confidence            3344567779999999999999999999999999999999998 99999999988887777666 33             


Q ss_pred             ccccccccccchhhHHHHHHHHHHHHHhcCccccccccccccCCCCCCCchHHHhHHHHHHHHHHHHHhhhHHHHHHhhh
Q 008231          134 YRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKAMIFFFNRFYFAISIGSLFAVIVLVY  213 (573)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~~~~~  213 (573)
                                   .+.+.+++.|++.|++.+...+....++.|.+| ++      |+++.++++.+.++|..+++.+++.
T Consensus        85 -------------~~~~~l~~~~~~~g~g~~~~~~~~~~~~~~~~~-~~------~~~~~~~~~~~~~~g~~i~~~~~~~  144 (355)
T TIGR00896        85 -------------PGTALLFAGTALIGVGIAIINVLLPSLIKRDFP-QR------VGLMTGLYSMALMGGAALAAAATVP  144 (355)
T ss_pred             -------------ccHHHHHHHHHHHHHHHHHHhccchHHHHHhCc-ch------hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence                         256688899999999999888888888888876 45      9999999999999999999999998


Q ss_pred             hhccc--chhHHHHHHHHHHHHHHHHHHhcCccccccCCCCCchhHHHHHHHHHHhccCCCCCCCCCcchhcccccCCCC
Q 008231          214 VQDNV--GRGWGYGISAGTMVVAAAILLIGTPWYRFKKPRGSPLTVIWRVLLLAWKKRSHPYPDHPSLLNEYQNAKVPHT  291 (573)
Q Consensus       214 l~~~~--g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (573)
                      +.+..  +||+.|.+.++..++....+ .  ++.++++++.++                    .                
T Consensus       145 l~~~~~~~w~~~f~~~~~~~~~~~~~~-~--~~~~~~~~~~~~--------------------~----------------  185 (355)
T TIGR00896       145 LAQHSGGHWQQALAWWALPALLALLAW-I--PQVRRRVAANQT--------------------T----------------  185 (355)
T ss_pred             HHHhhhhhHHHHHHHHHHHHHHHHHHH-h--hhhccccCCCCC--------------------C----------------
Confidence            87765  38988876655433332221 1  211111000000                    0                


Q ss_pred             CccchhhhhhhhhhhhhhccccCCcccccchhhHHHHHHHHhHHHHHHHHHHHHHHhhcccchhhhhhhcccccccccee
Q 008231          292 EKFKCLDKAAIIEDNAVANENKNNSWIVSTVTEVEEVKMVLKLLPIWATCILFWTVYSQMTTFTVEQATFMNRKIGSFTV  371 (573)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  371 (573)
                      .                    ....++     ..++++.....+...+....++....+.+.++..  .+.+      ..
T Consensus       186 ~--------------------~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~--~g~~------~~  232 (355)
T TIGR00896       186 T--------------------RLTPVR-----IWRSPLAWQVTVFFGLQSGLYYSLIGWLPAILIS--HGAS------AA  232 (355)
T ss_pred             C--------------------CCCCch-----hhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--cCCC------HH
Confidence            0                    000000     0011111111111111122222222222222211  1111      11


Q ss_pred             cccccchhhHHHHHHHHHhhhhhhhhhhcccccccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCcccchhH
Q 008231          372 PSGSLSAFLFITILLFTSLNEKVFVPLARKITHSIQGMTSLQRVGTGLIFSVIAMIVSAVIEQQRRETSVQKHIQISAFW  451 (573)
Q Consensus       372 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~  451 (573)
                      ..+.+.+...++.++..++.+++.||+.+|+          +.+..+.++.+++.+.+....          .   ...+
T Consensus       233 ~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~----------~~~~~~~~~~~~~~~~~~~~~----------~---~~~~  289 (355)
T TIGR00896       233 TAGSLLALMQLAQAASALLIPALARRVKDQR----------GIVAVLAVLQLVGLCGLLFAP----------M---HGLW  289 (355)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHhhhccch----------HHHHHHHHHHHHHHHHHHHhh----------h---hHHH
Confidence            2334555566667777777777765553221          124556666666665555431          0   1111


Q ss_pred             HHHHHHHHHHHHHhhhhhhhheeeccc-CchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 008231          452 LVPQYFLVGAGEAFVYVGQLEFFIREG-PERMKSMSTGLFLSAISMGMFVSSMLVSIVDKIT  512 (573)
Q Consensus       452 lv~~~~l~g~~~~~~~~~~~~~~~~~~-p~~~rg~~~gi~~~~~~lg~~ig~~~~~~i~~~~  512 (573)
                        ...++.|++.+...|...+.+.+.. +++.++...++.+...++++.++|.+.|++.+..
T Consensus       290 --~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~~  349 (355)
T TIGR00896       290 --AWALVLGLGQGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDIS  349 (355)
T ss_pred             --HHHHHHHHhhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence              1346678888888887777665444 4677899999999999999999999999998754

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=99.85  E-value=1.5e-18  Score=183.47  Aligned_cols=171  Identities=14%  Similarity=0.090  Sum_probs=138.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHH
Q 008231           35 AGLILGTELSERICAMGISMNLVTYLVGDLHLSSAKSATIVTNFMGTLNLLGLLGGFLADAKLGRYLTVAIFASVTALVV  114 (573)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~  114 (573)
                      ++.++...+...+.+ ++...+.+.+++++|+|..+.+++.+.+.+++.++.++.|++.||+ |||+++.++..+.+++.
T Consensus         5 ~~~~~~~f~~~G~~~-~~~~~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~-G~r~~~~~g~~l~~~g~   82 (410)
T TIGR00885         5 FALITSLFALWGFAN-DITNPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKL-SYKAGILLGLFLYALGA   82 (410)
T ss_pred             HHHHHHHHHHHHHHH-HhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHHHH
Confidence            344444444444444 4555555677999999999999999999999999999999999998 99999999999999998


Q ss_pred             HHHHhhccCCCCCCCCCccccccccccccchhhHHHHHHHHHHHHHhcCccccccccccccCCCCCCCchHHHhHHHHHH
Q 008231          115 GLLTSATSIPSMRPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKAMIFFFN  194 (573)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  194 (573)
                      .++..+...                       .+++.++++|++.|+|.+...+...+++.+..|+++      |++..+
T Consensus        83 ~l~~~~~~~-----------------------~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~------~~~~~~  133 (410)
T TIGR00885        83 FLFWPAAEI-----------------------MNYTLFLVGLFILTAGLGFLETAANPYILVMGPEST------ATRRLN  133 (410)
T ss_pred             HHHHHHHhh-----------------------ccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhH------HHHHHH
Confidence            886543211                       267789999999999999999999999999988887      899999


Q ss_pred             HHHHHHHhhhHHHHHHhhhhhcc--------------------------cchhHHHHHHHHHHHHHHH
Q 008231          195 RFYFAISIGSLFAVIVLVYVQDN--------------------------VGRGWGYGISAGTMVVAAA  236 (573)
Q Consensus       195 ~~~~~~~ig~~~~~~~~~~l~~~--------------------------~g~~~~f~~~~~~~~~~~~  236 (573)
                      +.+...++|..+||.+++.+...                          .+||++|.+.++..++..+
T Consensus       134 ~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~  201 (410)
T TIGR00885       134 LAQSFNPFGSIIGMVVAQQLILSNLPHQSQDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVAL  201 (410)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999998877422                          3699999877765554433

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.84  E-value=9e-18  Score=177.40  Aligned_cols=163  Identities=13%  Similarity=0.051  Sum_probs=128.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhHHHHHhhhcc----chhH-HHHHHHHHHHHHHHH
Q 008231           42 ELSERICAMGISMNLVTYLVGDLHLSSAKSATIVTNFMGTLNLLGLLGGFLADAKL----GRYL-TVAIFASVTALVVGL  116 (573)
Q Consensus        42 ~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~----Grr~-~~~~~~~~~~~~~~~  116 (573)
                      -+.+.+.+.....-+|.|+.+ .|+|.+|.|++..+...  .+..+++|+++||+.    |||| .+.++..+.+++..+
T Consensus         8 ~~~~~~~~~~~~~~~~~~l~~-~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~~   84 (402)
T PRK11902          8 GFASGLPLALTSGTLQAWMTV-EGLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASIAA   84 (402)
T ss_pred             HHHHhhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHHHH
Confidence            344445555566678888885 59999999999766654  699999999999972    5655 677878888877777


Q ss_pred             HHhhccCCCCCCCCCccccccccccccchhhHHHHHHHHHHHHHhcCccccccccccccCCCCCCCchHHHhHHHHHHHH
Q 008231          117 LTSATSIPSMRPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKAMIFFFNRF  196 (573)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  196 (573)
                      +++...                       ..+.+.+++..++.+.+.+...+...+++.|++|+++      |+++.++.
T Consensus        85 l~~~~~-----------------------~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~------r~~~~~~~  135 (402)
T PRK11902         85 MAFCPP-----------------------HAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEE------RGAGAAVK  135 (402)
T ss_pred             HHhcCc-----------------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhh------hhHHHHHH
Confidence            776421                       0246667777777788888888999999999999988      99999999


Q ss_pred             HHHHHhhhHHHHHHhhhhhcc-cchhHHHHHHHHHHHHHHH
Q 008231          197 YFAISIGSLFAVIVLVYVQDN-VGRGWGYGISAGTMVVAAA  236 (573)
Q Consensus       197 ~~~~~ig~~~~~~~~~~l~~~-~g~~~~f~~~~~~~~~~~~  236 (573)
                      ..+.++|..+++.+++++.+. .|||.+|++.++..++..+
T Consensus       136 ~~g~~~g~i~g~~l~~~l~~~~~gw~~~f~i~a~~~l~~~l  176 (402)
T PRK11902        136 VLGYRLAMLVSGGLALWLADRVLGWGNTYLLMAGLMLAGAL  176 (402)
T ss_pred             HHHHHHHHHHHhHHHHHHHhcccCHHHHHHHHHHHHHHHHH
Confidence            999999999999999998875 5999999987776655444

>TIGR00901 2A0125 AmpG-related permease

Probab=99.83  E-value=9.8e-19  Score=181.48  Aligned_cols=161  Identities=12%  Similarity=0.081  Sum_probs=122.6

Q ss_pred             HHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhHHHHHhhhc----cchhHHH-HHHHHHHHHHHHHHHhhccCCCC
Q 008231           52 ISMNLVTYLVGDLHLSSAKSATIVTNFMGTLNLLGLLGGFLADAK----LGRYLTV-AIFASVTALVVGLLTSATSIPSM  126 (573)
Q Consensus        52 ~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~----~Grr~~~-~~~~~~~~~~~~~~~~~~~~~~~  126 (573)
                      +...+.+.+.+++|+|.++.++.... .+...+ .+++|+++||+    .||||.+ +.+..+.++....+++..+.   
T Consensus         6 ~~~~~~~~~~~~~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~~---   80 (356)
T TIGR00901         6 LVGNTLPYWLRSKNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVPS---   80 (356)
T ss_pred             hHHhHHHHHHHHcCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCcc---
Confidence            33444455566889999999999655 444444 89999999996    3898874 56666677766666654311   


Q ss_pred             CCCCCccccccccccccchhhHHHHHHHHHHHHHhcCccccccccccccCCCCCCCchHHHhHHHHHHHHHHHHHhhhHH
Q 008231          127 RPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKAMIFFFNRFYFAISIGSLF  206 (573)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~  206 (573)
                                          .+.+.+....++.+++.+...+...+++.|++|+++      |+++.++...+.++|.++
T Consensus        81 --------------------~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~------r~~~~~~~~~~~~~G~~~  134 (356)
T TIGR00901        81 --------------------TDLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEE------LGYGSTIYIVGYRAGMLL  134 (356)
T ss_pred             --------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhh------hchHHHHHHHHHHHHHHH
Confidence                                245566666677788888888999999999999888      999999999999999999


Q ss_pred             HHHHhhhhhcccc--------hhHHHHHHHHHHHHHHHHHHhcCc
Q 008231          207 AVIVLVYVQDNVG--------RGWGYGISAGTMVVAAAILLIGTP  243 (573)
Q Consensus       207 ~~~~~~~l~~~~g--------~~~~f~~~~~~~~~~~~~~~~~~~  243 (573)
                      ++.+++++.+..|        ||.+|++.++..+++.+..++..+
T Consensus       135 ~~~l~~~l~~~~g~~~~~~~~wr~~f~i~ai~~l~~~~~~~~~~~  179 (356)
T TIGR00901       135 SGSLALVLASPEFANTGLITLWGYIFFWTALLILPGLLVTLFLAK  179 (356)
T ss_pred             HHHHHHHHhhhcccccccccccHHHHHHHHHHHHHHHHHHHHhcc
Confidence            9999999988888        999999888766665544443333

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=99.83  E-value=3.2e-20  Score=193.84  Aligned_cols=362  Identities=34%  Similarity=0.518  Sum_probs=230.3

Q ss_pred             HHHHHHHHHHHHHHHHHHhhccCCCCCCCCCccccccccccccchhhHHHHHHHHHHHHHhcCccccccccccccCCCCC
Q 008231          101 LTVAIFASVTALVVGLLTSATSIPSMRPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDT  180 (573)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~  180 (573)
                      |+++++.++..+|.+++.+++..+..                 +.+.+...++++.+++++|.|++.|+..++++|++++
T Consensus         2 ktI~~g~~~~~~G~~ll~l~~~~~~~-----------------~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~   64 (372)
T PF00854_consen    2 KTILLGSIVYLLGHVLLTLSAIPPSL-----------------PSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDE   64 (372)
T ss_dssp             HHHHHHHHHHHHHHHH--HHHTSSSC-----------------------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSST
T ss_pred             HhhhHHHHHHHHHHHHhHHHHhcchh-----------------hhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcc
Confidence            78999999999999998776543321                 1223456899999999999999999999999999998


Q ss_pred             CCchHHHhHHHHHHHHHHHHHhhhHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHHHHhcCcccccc-CCCCCchhH-H
Q 008231          181 SDPKEEKAMIFFFNRFYFAISIGSLFAVIVLVYVQDNVGRGWGYGISAGTMVVAAAILLIGTPWYRFK-KPRGSPLTV-I  258 (573)
Q Consensus       181 ~~~~~~~~r~~~~~~~~~~~~ig~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~  258 (573)
                      ++++   +|.++++++|++.|+|+.+++.+.+++.+++||.+.|.++.+.++++.+.++..++.++.. ++.+.+... .
T Consensus        65 ~~~~---~~~~~F~~fY~~in~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~~~~~y~~~~~~~~~~~~~~~  141 (372)
T PF00854_consen   65 DDDS---RRDSFFNWFYWGINIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFLSGRKRYRKVAPPGGSPLTNFI  141 (372)
T ss_dssp             TTTT---HHHHHHHHHHHHHHHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHHCCCCTT--S-----S--S--S
T ss_pred             cchh---hhhhhHHHHHHHHhhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHHhCCcCCcCcCccCCcccchhH
Confidence            7322   2999999999999999999999999999999999999999999999999888888888776 555655555 2


Q ss_pred             HHHHHHHHhccCCCCCCCCCcchhccc--ccCCCCCccchhhhhhhhhhhhhhccccCCcccc-cchhhHHHHHHHHhHH
Q 008231          259 WRVLLLAWKKRSHPYPDHPSLLNEYQN--AKVPHTEKFKCLDKAAIIEDNAVANENKNNSWIV-STVTEVEEVKMVLKLL  335 (573)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~  335 (573)
                      ........+++....|....+......  .....................       ...|.. +...+++..+.+...+
T Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~k~~~~~~  214 (372)
T PF00854_consen  142 KLVLVAAFKKRKLAVPKGSSWLDWALFQYSERSIFGIIVFIRAAVIFFPE-------IFFWALFCQVQRVEELKALIRFL  214 (372)
T ss_dssp             HHHHHHHHHHHCCCH-HHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCC-------HHHHTTTSSTTTHHHCCHHHCHH
T ss_pred             HHHHHHHHHHhhcccccchHHHHHhhhhhhhhhhhhhhhhccchhhhhhh-------hhhcccCCccceeeeeeeeeecc
Confidence            333333344444433322222221111  111111111111111110000       000100 1223334445556666


Q ss_pred             HHHHHHHHHHHHhhcccchhhhhhhcccccccc-ceecccccchhhHHHHHHHHHhhhhhhhhhhcccccccCCCchHHH
Q 008231          336 PIWATCILFWTVYSQMTTFTVEQATFMNRKIGS-FTVPSGSLSAFLFITILLFTSLNEKVFVPLARKITHSIQGMTSLQR  414 (573)
Q Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~  414 (573)
                      +.+.+.+.+.+...+.+.+...+...++...++ +.+|+++++.++.+..+++.|+.++++.|+.|+..    ..+.+.+
T Consensus       215 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~l~~~n~i~iii~~pi~~~~~~p~~~~~~----~~~~~~k  290 (372)
T PF00854_consen  215 PIFLFWIFYWQMYSQLNTFFLLQVPQMDRGIGGLFGIPPAWLQSFNPIFIIIFIPILDRVVYPLLRRGI----QPSPPQK  290 (372)
T ss_dssp             HCCCHHHHHHHHCTCCHHHHHHCGGGTTT-SS------SGGGTTHHHHHCHHHHHHHHHHCCCTTTT----------HHH
T ss_pred             ccCeEEEEeeehhhhhhhHHHHhccccccccccccccccchhhhHHHHHHHHHHHHHHHHHhHHhhhcc----cchhhhh
Confidence            666677777787777777777777777766776 88999999999999999999999999999887322    3678889


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcccCCcccchhHHHHHHHHHHHHHHhhhhhhhheeecccCchhHHHHHHHHHHHH
Q 008231          415 VGTGLIFSVIAMIVSAVIEQQRRETSVQKHIQISAFWLVPQYFLVGAGEAFVYVGQLEFFIREGPERMKSMSTGLFLSAI  494 (573)
Q Consensus       415 ~~~g~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~lv~~~~l~g~~~~~~~~~~~~~~~~~~p~~~rg~~~gi~~~~~  494 (573)
                      +..|++++.++++.....+..+..... .....+.+|.++.++++.+++.+..+...+...|.+|++..+...|++....
T Consensus       291 ~~~G~~~~~~~~~~~~~v~~~r~~~~~-~~~~~~~~~~~~~~~~~~~~e~~l~~~g~~~~~~~a~~~~p~~m~~~~~~~~  369 (372)
T PF00854_consen  291 FGIGMVFAILAMFVAAIVEIRRLCYAQ-PCGKVSPWWQVPMYIFWLIPEYFLSGTGESAAYEFAPSRAPSSMMGIWFALS  369 (372)
T ss_dssp             HHHH-HHHHHHHHTTTHHHH---HH-----TT--THHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTT-SSSSTHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHhhhhhccc-ccCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHhhHHhhhHHHHHHHHHHh
Confidence            999999999999888776542111111 2223344777799999999999999999997777777777777777666543

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=99.82  E-value=3.4e-17  Score=176.11  Aligned_cols=149  Identities=13%  Similarity=0.048  Sum_probs=122.2

Q ss_pred             HHHHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCcc
Q 008231           54 MNLVTYLVGDLHLSSAKSATIVTNFMGTLNLLGLLGGFLADAKLGRYLTVAIFASVTALVVGLLTSATSIPSMRPPQCDD  133 (573)
Q Consensus        54 ~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (573)
                      .....++..++|-+ .+..|+.+...+...+..++.|+|+|.+ |||+.++.+.++..+|.++++.+.            
T Consensus        64 a~~l~~I~~diG~~-~~~~w~~~~~~l~~av~~~~~G~LSDlf-GRr~~~i~g~~l~vvG~Iv~atA~------------  129 (599)
T PF06609_consen   64 ASILPYINADIGGS-DNWSWFSTAWTLASAVSFPFVGRLSDLF-GRRYFFIIGSLLGVVGSIVCATAQ------------  129 (599)
T ss_pred             HHHHHHHHHhcCCC-ccchHHHHHHHHHHHHHHHhhHHHHHHh-cchHHHHHHHHHHHhHHHHhhcCC------------
Confidence            34456888999975 5677899999999999999999999998 999999999999999999999874            


Q ss_pred             ccccccccccchhhHHHHHHHHHHHHHhcCccccccccccccCCCCCCCchHHHhHHHHHHHHHHHHHhhhHHHHHHhhh
Q 008231          134 YRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKAMIFFFNRFYFAISIGSLFAVIVLVY  213 (573)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~~~~~  213 (573)
                                    +...++++..+.|+|.|... .....++|..|.+.      |..+..+.....-+....+|.++..
T Consensus       130 --------------~~~~~iag~~l~GvgaG~~~-~~~~~isEl~p~k~------R~~~~~~~~~~~i~~~~~~~~ia~~  188 (599)
T PF06609_consen  130 --------------NMNTFIAGMVLYGVGAGVQE-LAALAISELVPNKW------RGLGLAIASIPFIITTWISPLIAQL  188 (599)
T ss_pred             --------------cHHHHHHHHHHHHHhhHHHH-HHHHHHHHhcccch------hhhHhHHHHHHHHhhhcccHHHHHH
Confidence                          67789999999999977765 44556899999887      8888877766666666677777777


Q ss_pred             hhcccchhHHHHHHHHHHHHHHHH
Q 008231          214 VQDNVGRGWGYGISAGTMVVAAAI  237 (573)
Q Consensus       214 l~~~~g~~~~f~~~~~~~~~~~~~  237 (573)
                      +....+|||.|++..+...++++.
T Consensus       189 ~~~~~~WRw~~~~~~i~~~i~~vl  212 (599)
T PF06609_consen  189 FAAHSGWRWIFYIFIIWSGIALVL  212 (599)
T ss_pred             hccCCCcchHHHHHHHHHHHHHHH
Confidence            766678999999888766665543

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>TIGR00806 rfc RFC reduced folate carrier

Probab=99.80  E-value=1.2e-17  Score=173.04  Aligned_cols=170  Identities=12%  Similarity=-0.080  Sum_probs=143.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchh-hhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHH
Q 008231           35 AGLILGTELSERICAMGISMNLVTYLVGDLHLSSAK-SATIVTNFMGTLNLLGLLGGFLADAKLGRYLTVAIFASVTALV  113 (573)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~-~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~  113 (573)
                      ..++|+-.|+..  +-...+++.+|+.+++|++..| .|.+.+++..++.++.+++|+++||+ |.|+++.++++.+.+.
T Consensus        29 ~~~lC~fGF~~e--~R~n~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrl-G~K~vL~l~~l~Wsl~  105 (511)
T TIGR00806        29 VLYLCFYGFMAQ--FRPGESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYL-RYKPVLVLQALSFVCV  105 (511)
T ss_pred             HHHHHHHHHHHH--hhchHHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHHH
Confidence            333444444333  3345677888999999999999 99999999999999999999999998 9999999999999999


Q ss_pred             HHHHHhhccCCCCCCCCCccccccccccccchhhHHHHHHHHHHHHHhcCccccccccccccCCCCCCCchHHHhHHHHH
Q 008231          114 VGLLTSATSIPSMRPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKAMIFFF  193 (573)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  193 (573)
                      .++.++++                          ++..+.+.|++.|++.|... ....++..++|+++      |+++.
T Consensus       106 t~L~~fa~--------------------------Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP~kE------R~rat  152 (511)
T TIGR00806       106 WLLLLLGT--------------------------SVWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPSR------YQRAA  152 (511)
T ss_pred             HHHHHHHH--------------------------HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHH------HHHHH
Confidence            99999873                          67799999999999999999 99999999999988      99999


Q ss_pred             HHHHHHHHhhhHHHHHHhhhhhcccchhHHH---HHHHHHHHHHHHHHHhc
Q 008231          194 NRFYFAISIGSLFAVIVLVYVQDNVGRGWGY---GISAGTMVVAAAILLIG  241 (573)
Q Consensus       194 ~~~~~~~~ig~~~~~~~~~~l~~~~g~~~~f---~~~~~~~~~~~~~~~~~  241 (573)
                      ++.+.+..+|.++++++++++ ..+||++-+   +++.....+++++.++.
T Consensus       153 si~~sg~~vG~~Ia~~L~qll-~s~gWr~y~~Ln~Isl~s~~~a~~~a~~L  202 (511)
T TIGR00806       153 AYSRAAVLLGVFLSSVLGQLL-VTLGWISYSTLNIISLVFMTFSVFLALFL  202 (511)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-HhcCchhHHHHHHHHHHHHHHHHHHHHhC
Confidence            999999999999999999994 568998743   45555555555544443

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=99.80  E-value=9.6e-17  Score=170.26  Aligned_cols=436  Identities=13%  Similarity=0.060  Sum_probs=245.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhHHHHHhhh----ccchhHHHHHH-HH
Q 008231           34 AAGLILGTELSERICAMGISMNLVTYLVGDLHLSSAKSATIVTNFMGTLNLLGLLGGFLADA----KLGRYLTVAIF-AS  108 (573)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr----~~Grr~~~~~~-~~  108 (573)
                      .++.++...+.-++++-...+++++|+ +++|.+..+.+++..+..+...+.+|+.|+++||    + ||||.++++ ..
T Consensus         5 ~li~~~~~~~Giq~~~~l~~~~l~~yl-~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~-GRRrp~il~g~~   82 (477)
T TIGR01301         5 KLLRVASVAAGVQFGWALQLSLLTPYV-QELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRF-GRRRPFIAAGAA   82 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCC-CChHHHHHHHHH
Confidence            456666677777777777777888876 5899999999999999999999999999999995    7 999998875 55


Q ss_pred             HHHHHHHHHHhhccCCCCCCCCCccccccccccccchhhHHHHHHHHHHHHHhcCccccccccccccCCCCCCCchHHHh
Q 008231          109 VTALVVGLLTSATSIPSMRPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKA  188 (573)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (573)
                      ..+++..+++++.++.....   ++   .+..   ..........++..+..++.....+...++++|.+|+++++    
T Consensus        83 ~~~~~l~ll~~~~~~~~~~~---~~---~~~~---~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~----  149 (477)
T TIGR01301        83 LVAFAVILIGFAADIGHLFG---DN---LDKK---TKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARR----  149 (477)
T ss_pred             HHHHHHHHHHhCchhhhhcc---cc---cccc---chhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHH----
Confidence            66666677766543211000   00   0000   00011223344444555677777778889999999988621    


Q ss_pred             HHHHHHHHHHHHHhhhHHHHHHhhhh--hccc-------------chhHHHHHHHHHHHHHHHHHHhcCccccccCCCCC
Q 008231          189 MIFFFNRFYFAISIGSLFAVIVLVYV--QDNV-------------GRGWGYGISAGTMVVAAAILLIGTPWYRFKKPRGS  253 (573)
Q Consensus       189 r~~~~~~~~~~~~ig~~~~~~~~~~l--~~~~-------------g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (573)
                      ++.+.++.+...++|+++|+.++++.  .+..             +.++.|++.++..++..++..+..+|.+..++++.
T Consensus       150 ~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~~~~~~  229 (477)
T TIGR01301       150 TRIANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENPLIGSDDF  229 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccCCCccccc
Confidence            46899999999999999999998865  2111             56788998888777776665555555332111100


Q ss_pred             chhHHHHHHHHHHhccCCCCCCCCCcchhcccccCCCCCccchhhhhhhhhhhhhhccccCCcccccchhhHHHH-HHHH
Q 008231          254 PLTVIWRVLLLAWKKRSHPYPDHPSLLNEYQNAKVPHTEKFKCLDKAAIIEDNAVANENKNNSWIVSTVTEVEEV-KMVL  332 (573)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l  332 (573)
                      ...                         +.  +..++.+....   .+..             +     +..++. +.+.
T Consensus       230 ~~~-------------------------~~--~~~~~~~~~~~---~~~i-------------~-----~~~~~mP~~m~  261 (477)
T TIGR01301       230 INS-------------------------EA--APPSKHGEEAF---FGEL-------------F-----GAFKYLPRPVW  261 (477)
T ss_pred             hhh-------------------------hc--ccccccchhhh---HHHH-------------H-----HHHHHCCHHHH
Confidence            000                         00  00000000000   0000             0     000000 1122


Q ss_pred             hHHHHHHHHHHHHHHhhcccchhhhhhhcc-ccc---cccceec-ccccchhhHHHHHHHHHhhhhhhhhhhcccccccC
Q 008231          333 KLLPIWATCILFWTVYSQMTTFTVEQATFM-NRK---IGSFTVP-SGSLSAFLFITILLFTSLNEKVFVPLARKITHSIQ  407 (573)
Q Consensus       333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~r~~~~~~  407 (573)
                      +++.+-++.-.-|..+..+.+.+.-+..+- +..   .+..++. ..+...++.+...+    .+.+..++.||...   
T Consensus       262 ~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~s~~~~i----~s~~l~~l~~~~g~---  334 (477)
T TIGR01301       262 ILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLMLNSVVLGI----TSIGMEKLCRGWGA---  334 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHhcc---
Confidence            222222222222233333333222211110 100   0000000 01112222222222    33333333444321   


Q ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHHHh--h-ccc---CCcccc-hhHHHHHHHHHHHHHHhhhhhhhheeecccCc
Q 008231          408 GMTSLQRVGTGLIFSVIAMIVSAVIEQQRRE--T-SVQ---KHIQIS-AFWLVPQYFLVGAGEAFVYVGQLEFFIREGPE  480 (573)
Q Consensus       408 ~~~~~~~~~~g~~~~~i~~i~~~~~~~~~~~--~-~~~---~~~~~~-~~~lv~~~~l~g~~~~~~~~~~~~~~~~~~p~  480 (573)
                         .......+.++.+++++...+......+  + +++   -..... .+..+..+.+.|+..+..+...++++++..|+
T Consensus       335 ---~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Gi~~A~~~siPfal~s~~~~~  411 (477)
T TIGR01301       335 ---GKRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFAILGIPLAITYSIPFALASIRSSN  411 (477)
T ss_pred             ---chhHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHHHhhHHHHHHHHHhHHHHHHHccc
Confidence               1122467777777787777654321000  0 000   000011 25566778889999999999999999999994


Q ss_pred             --hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCccccccccchhhHHHHHHHHHHHHHHHHHHHHHhhcc
Q 008231          481 --RMKSMSTGLFLSAISMGMFVSSMLVSIVDKITNKHWLRSNLNKGKLNNFYWLLAVLGLLNFMVFLFFAMKHQ  552 (573)
Q Consensus       481 --~~rg~~~gi~~~~~~lg~~ig~~~~~~i~~~~~~~w~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~  552 (573)
                        +..|..+|+.|++..+...+.....|.+.+..+          ++....+.+-++..+++++..++..|+.+
T Consensus       412 ~~~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g----------~~~~~~~~~~gv~~~~aa~~~~~~~~~~~  475 (477)
T TIGR01301       412 LGAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFG----------GGNLPAFVVGAVAAFVSGLLALILLPRPR  475 (477)
T ss_pred             cCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcC----------CCCeeHHHHHHHHHHHHHHHHHHhCCCCC
Confidence              556999999999999999999988887554322          12234566667777788887777777643

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>PRK09669 putative symporter YagG; Provisional

Probab=99.79  E-value=8.1e-17  Score=172.40  Aligned_cols=357  Identities=12%  Similarity=0.017  Sum_probs=202.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhHHHHHhhh----ccchhH-HHHHHHHHHHH
Q 008231           38 ILGTELSERICAMGISMNLVTYLVGDLHLSSAKSATIVTNFMGTLNLLGLLGGFLADA----KLGRYL-TVAIFASVTAL  112 (573)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr----~~Grr~-~~~~~~~~~~~  112 (573)
                      -.++.+..++.+..+..+++.|+++.+|+|..++|.+..+..+.-.+..|+.|+++||    + |||| .++++....++
T Consensus        14 yg~g~~~~~~~~~~~~~~l~~~~t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~-Grrrp~il~~~~~~~i   92 (444)
T PRK09669         14 YGLGDTACNLVWQTVMLFLAYFYTDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRH-GQFRPYLLWFAIPFGV   92 (444)
T ss_pred             hcchhhhhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCC-CCcchhHHHHHHHHHH
Confidence            3445566666666778889999999999999999999999999999999999999999    5 7754 45566666666


Q ss_pred             HHHHHHhhccCCCCCCCCCccccccccccccchhhHHHHHHHHHHHHHhcCccccccccccccCCCCCCCchHHHhHHHH
Q 008231          113 VVGLLTSATSIPSMRPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKAMIFF  192 (573)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~  192 (573)
                      +..++......+                    .......+++...+.+++......+..++.+|+.++.++     |.+.
T Consensus        93 ~~~l~f~~p~~~--------------------~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~~t~~~~e-----R~~l  147 (444)
T PRK09669         93 VCLLTFYTPDFG--------------------ATGKIIYACVTYILLSLVYTAINVPYCAMPGAITNDPRE-----RHSL  147 (444)
T ss_pred             HHHHHHhCCCCC--------------------cchHHHHHHHHHHHHHHHHHhhcchHHHhHHHhcCCHHH-----HHHH
Confidence            665544332111                    012344455555555666666777777899998754321     8888


Q ss_pred             HHHHHHHHHhhhHHHHHHhhhhhc-------ccchhHHHHHHHHHHHHHHHHHHhcCccccccCCCCCchhHHHHHHHHH
Q 008231          193 FNRFYFAISIGSLFAVIVLVYVQD-------NVGRGWGYGISAGTMVVAAAILLIGTPWYRFKKPRGSPLTVIWRVLLLA  265 (573)
Q Consensus       193 ~~~~~~~~~ig~~~~~~~~~~l~~-------~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (573)
                      .++.....++|..+++.+...+..       ..||+..+.+.++..++..+..++..++... +++.++           
T Consensus       148 ~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~~ii~~v~~~~~~~~~~e~~~-~~~~~~-----------  215 (444)
T PRK09669        148 QSWRFALSFIGGLIVSVIALPLVDILGKGDEQKGYFYAMMVMGLLGVVLFFCCFFMTKERYT-PEVDNS-----------  215 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHhCCeEEecC-CCCcCC-----------
Confidence            888777788887777665443332       2467766666655544443333333222111 000000           


Q ss_pred             HhccCCCCCCCCCcchhcccccCCCCCccchhhhhhhhhhhhhhccccCCcccccchhhHHHHHHHHhHHHHHHHHHHHH
Q 008231          266 WKKRSHPYPDHPSLLNEYQNAKVPHTEKFKCLDKAAIIEDNAVANENKNNSWIVSTVTEVEEVKMVLKLLPIWATCILFW  345 (573)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  345 (573)
                                                  .+..+..                      ....+.|.....+...+......
T Consensus       216 ----------------------------~~~~~~~----------------------~~~~~n~~~~~l~~~~~~~~~~~  245 (444)
T PRK09669        216 ----------------------------SSVWKDL----------------------KLLLGNSQWRIMFIFNVVLLTAV  245 (444)
T ss_pred             ----------------------------CCHHHHH----------------------HHHhCCchHHHHHHHHHHHHHHH
Confidence                                        0000000                      00001111111111111111111


Q ss_pred             HHhhcccchhhhhhhccccccccceecccccchhhHHHHHHHHHhhhhhhhhhhcccccccCCCchHHHHHHHHHHHHHH
Q 008231          346 TVYSQMTTFTVEQATFMNRKIGSFTVPSGSLSAFLFITILLFTSLNEKVFVPLARKITHSIQGMTSLQRVGTGLIFSVIA  425 (573)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~i~  425 (573)
                      ........++....  +...    . ....+.....+..++..++.+++.+|+.+|.           .+..+.++..++
T Consensus       246 ~~~~~~~~y~~~~~--~~~~----~-~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~-----------~~~~~~~~~~~~  307 (444)
T PRK09669        246 VTRGGATLYYVNYV--LLRP----D-LATLFLVTGMIAGLFGALLSERLLGKFDRVR-----------AFKWTIVAFVIL  307 (444)
T ss_pred             HHHhhhhheeeeee--cCCH----H-HHHHHHHHHHHHHHHHHHHHHHHHHHhChHH-----------HHHHHHHHHHHH
Confidence            11111111211111  1100    1 0112222333444555666667765544332           234444443333


Q ss_pred             HHHHHHHHHHHHhhcccCCcccchhHHHHHHHHHHHHHHhhhhhhhheeecccC-------chhHHHHHHHHHHHHHHHH
Q 008231          426 MIVSAVIEQQRRETSVQKHIQISAFWLVPQYFLVGAGEAFVYVGQLEFFIREGP-------ERMKSMSTGLFLSAISMGM  498 (573)
Q Consensus       426 ~i~~~~~~~~~~~~~~~~~~~~~~~~lv~~~~l~g~~~~~~~~~~~~~~~~~~p-------~~~rg~~~gi~~~~~~lg~  498 (573)
                      .+.....          .  ..+.+.+.+..++.+++.+...+..++++.|..+       ++..|...|++++...+|.
T Consensus       308 ~~~~~~~----------~--~~~~~~~~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~  375 (444)
T PRK09669        308 SALIFFI----------P--PSNVWLIFALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGL  375 (444)
T ss_pred             HHHHHHh----------C--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHH
Confidence            3222221          1  1134445556678899999999999999988875       3556788999999999999


Q ss_pred             HHHHHHHHHHhhhh
Q 008231          499 FVSSMLVSIVDKIT  512 (573)
Q Consensus       499 ~ig~~~~~~i~~~~  512 (573)
                      .+++.+.+.+.+..
T Consensus       376 alg~~i~g~ll~~~  389 (444)
T PRK09669        376 AIGGAVVGWILAWV  389 (444)
T ss_pred             HHHHHHHHHHHHHc
Confidence            99999999988754

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.78  E-value=2.2e-16  Score=167.81  Aligned_cols=153  Identities=18%  Similarity=0.160  Sum_probs=130.4

Q ss_pred             HhhhcCCCchhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCcccccccc
Q 008231           60 LVGDLHLSSAKSATIVTNFMGTLNLLGLLGGFLADAKLGRYLTVAIFASVTALVVGLLTSATSIPSMRPPQCDDYRRKHH  139 (573)
Q Consensus        60 l~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (573)
                      +.+++++...+.+.+.++|.+++.++.+++|.|.||+ .-.+.+....+++.+..++....                   
T Consensus        72 ~~edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~-~ls~~l~~~~~~w~~~~~~~~~~-------------------  131 (495)
T KOG2533|consen   72 LKEDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRF-PLSKGLSVSGILWGLFGFLTAAV-------------------  131 (495)
T ss_pred             CccccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhC-ChHHHHHHHHHHHHHHHHHHHHH-------------------
Confidence            3478889999999999999999999999999999998 87777777766666655555443                   


Q ss_pred             ccccchhhHHHHHHHHHHHHHhcCccccccccccccCCCCCCCchHHHhHHHHHHHHHHHHHhhhHHHHHHhhhhh----
Q 008231          140 QCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKAMIFFFNRFYFAISIGSLFAVIVLVYVQ----  215 (573)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~~~~~l~----  215 (573)
                             ++++.+++.|++.|+.++...|....+++.++.+++      |+..+++++...++|.++|.++...+.    
T Consensus       132 -------~s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e------~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~  198 (495)
T KOG2533|consen  132 -------HSFPGLIALRFLLGLFESGGWPGVVAILGNWYGKSE------RGLRMGIWYASASLGNIFGGLIAYGVFKLNG  198 (495)
T ss_pred             -------hhhHHHHHHHHHHHHHhcccchHHHHHHHhhcChhh------hhhhHHHHHHhcchhhHHHHHHHHHhhhhcC
Confidence                   478899999999999999999999999999999999      999999999999999999999987752    


Q ss_pred             --cccchhHHHHHHHHHHHHHHHHHHhcCccc
Q 008231          216 --DNVGRGWGYGISAGTMVVAAAILLIGTPWY  245 (573)
Q Consensus       216 --~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~  245 (573)
                        ...||||.|.+.+++.++..++.++..|..
T Consensus       199 ~~~~~gW~~~FiI~G~i~~~~gi~~f~~lp~~  230 (495)
T KOG2533|consen  199 SGGLAGWRWLFIIEGVITLVLGIVVFFFLPDN  230 (495)
T ss_pred             CCCcCCceeehhHHHHHHHHHHheEEEEecCC
Confidence              356899999999988777666666666643

>PRK09848 glucuronide transporter; Provisional

Probab=99.78  E-value=3.2e-16  Score=167.98  Aligned_cols=358  Identities=8%  Similarity=0.017  Sum_probs=193.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhHHHHHhhhc---cchhHHH-HHHHHHHH
Q 008231           36 GLILGTELSERICAMGISMNLVTYLVGDLHLSSAKSATIVTNFMGTLNLLGLLGGFLADAK---LGRYLTV-AIFASVTA  111 (573)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~---~Grr~~~-~~~~~~~~  111 (573)
                      +.-..+.+..+..+....++++.|+++.+|++..++|.+.+...+...+..++.|+++||.   +||||.+ .++.+...
T Consensus        11 ~~yg~g~~~~~~~~~~~~~~l~~y~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~   90 (448)
T PRK09848         11 VGYSLGDVANNFAFAMGALFLLSYYTDVAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLM   90 (448)
T ss_pred             HhhccchHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHH
Confidence            3334466667777777778899999999999999999999999999999999999999994   2667654 55555444


Q ss_pred             HHHHHHHhhc-cCCCCCCCCCccccccccccccchhhHHHHHHHHHHHHHhcCccccccccccccCCCCCCCchHHHhHH
Q 008231          112 LVVGLLTSAT-SIPSMRPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKAMI  190 (573)
Q Consensus       112 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~  190 (573)
                      +...++.... ..+                    .......+++...+.+++.+...++..++..++.++.++     |.
T Consensus        91 ~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~-----r~  145 (448)
T PRK09848         91 IFSVLVFWVPTDWS--------------------HSSKVVYAYLTYMGLGLCYSLVNIPYGSLATAMTQQPQS-----RA  145 (448)
T ss_pred             HHHHHHHhCcCCCC--------------------cchHHHHHHHHHHHHHHHHHHhcccHhhhhhhhcCCHHH-----HH
Confidence            4443332111 000                    001223334445567788888887777877777665331     66


Q ss_pred             HHHHHHHHH-----HHhhhHHHHHHhhhhhcccchhHHHH--HHHHHHHHHHHHHHhcCccccccCCCCCchhHHHHHHH
Q 008231          191 FFFNRFYFA-----ISIGSLFAVIVLVYVQDNVGRGWGYG--ISAGTMVVAAAILLIGTPWYRFKKPRGSPLTVIWRVLL  263 (573)
Q Consensus       191 ~~~~~~~~~-----~~ig~~~~~~~~~~l~~~~g~~~~f~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (573)
                      +..++-..+     .+++..++|++.+.........+..+  +.++..++..++.....+|....+.++.          
T Consensus       146 ~~~~~r~~~~~~~~~~~~~~~~p~i~~~~g~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~e~~~~~~~~~----------  215 (448)
T PRK09848        146 RLGAARGIAASLTFVCLAFLIGPSIKNSSPEEMVSVYHFWTIVLAIAGMVLYFICFKSTRENVVRIVAQP----------  215 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHHcCcEeccCCCccCC----------
Confidence            665554433     34556666666654322111111111  1111111111111111221110000000          


Q ss_pred             HHHhccCCCCCCCCCcchhcccccCCCCCccchhhhhhhhhhhhhhccccCCcccccchhhHHHHHHHHhHH-HHHHHHH
Q 008231          264 LAWKKRSHPYPDHPSLLNEYQNAKVPHTEKFKCLDKAAIIEDNAVANENKNNSWIVSTVTEVEEVKMVLKLL-PIWATCI  342 (573)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~  342 (573)
                                                     +..+.                      .....+.|...... ..++...
T Consensus       216 -------------------------------~~~~~----------------------~~~l~~n~~f~~~~~~~~~~~~  242 (448)
T PRK09848        216 -------------------------------SLKIS----------------------LQTLKRNRPLFMLCIGALCVLI  242 (448)
T ss_pred             -------------------------------CHHHH----------------------HHHHhCCchHHHHHHHHHHHHH
Confidence                                           00000                      00011111222111 1111111


Q ss_pred             HHHHHhhcccchhhhhhhccccccccceecccccchh-hHHHHHHHHHhhhhhhhhhhcccccccCCCchHHHHHHHHHH
Q 008231          343 LFWTVYSQMTTFTVEQATFMNRKIGSFTVPSGSLSAF-LFITILLFTSLNEKVFVPLARKITHSIQGMTSLQRVGTGLIF  421 (573)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~  421 (573)
                      .+.. ......++.....+.+      .. .+.+... ..+..++..++.+++.+|+.+|           +.+..|.++
T Consensus       243 ~~~~-~~~~~~~~~~~~~g~~------~~-~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~-----------~~~~~g~~~  303 (448)
T PRK09848        243 STFA-VSASSLFYVRYVLNDT------GL-FTVLVLVQNLVGTVASAPLVPGMVARIGKK-----------NTFLIGALL  303 (448)
T ss_pred             HHHH-HhhhheeeEeeecCCh------HH-HHHHHHHHHHHHHHHHHHHHHHHHHHhCcH-----------HHHHHHHHH
Confidence            1111 1111122221111111      10 1111122 2344455666666665444332           336667777


Q ss_pred             HHHHHHHHHHHHHHHHhhcccCCcccchhHHHHHHHHHHHHHHhhhhhhhheeecccCch-------hHHHHHHHHHHHH
Q 008231          422 SVIAMIVSAVIEQQRRETSVQKHIQISAFWLVPQYFLVGAGEAFVYVGQLEFFIREGPER-------MKSMSTGLFLSAI  494 (573)
Q Consensus       422 ~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~lv~~~~l~g~~~~~~~~~~~~~~~~~~p~~-------~rg~~~gi~~~~~  494 (573)
                      ..++++.+.+..            ..+.+.+....++.++|++...+..++...+..|.+       .+|.+.|++++.+
T Consensus       304 ~~i~~~~~~~~~------------~~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~  371 (448)
T PRK09848        304 GTCGYLLFFWVS------------VWSLPVALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTR  371 (448)
T ss_pred             HHHHHHHHHHcC------------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHH
Confidence            777766554421            123444555677889999999999999988888753       4699999999999


Q ss_pred             HHHHHHHHHHHHHHhhhh
Q 008231          495 SMGMFVSSMLVSIVDKIT  512 (573)
Q Consensus       495 ~lg~~ig~~~~~~i~~~~  512 (573)
                      .+|..+++.+.+.+.+..
T Consensus       372 klg~aig~~i~g~~l~~~  389 (448)
T PRK09848        372 KCGQAIGGSIPAFILGLS  389 (448)
T ss_pred             HHHHHHHHHHHHHHHHHc
Confidence            999999999999887654

>PRK10429 melibiose:sodium symporter; Provisional

Probab=99.77  E-value=3.2e-16  Score=169.13  Aligned_cols=364  Identities=12%  Similarity=0.024  Sum_probs=208.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhHHHHHhh----hccch-hHHHHHHHHHHHH
Q 008231           38 ILGTELSERICAMGISMNLVTYLVGDLHLSSAKSATIVTNFMGTLNLLGLLGGFLAD----AKLGR-YLTVAIFASVTAL  112 (573)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laD----r~~Gr-r~~~~~~~~~~~~  112 (573)
                      -.++.+..++.+..+.++++.|+++.+|++...+|.+..+.-+.-.+..|+.|+++|    |+ || |+-++++....++
T Consensus        11 yg~g~~~~~~~~~~~~~~l~~yyt~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~-Grrrp~il~g~i~~~i   89 (473)
T PRK10429         11 YGFGAFGKDFAIGIVYMYLMYYYTDVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRW-GKFKPWILIGTLANSV   89 (473)
T ss_pred             hccchhHHhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCC-CCcchhHhhhhHHHHH
Confidence            445566667777778889999999999999999999999999999999999999999    66 88 5556667777777


Q ss_pred             HHHHHHhhccCCCCCCCCCccccccccccccchhhHHHHHHHHHHHHHhcCccccccccccccCCCC-CCCchHHHhHHH
Q 008231          113 VVGLLTSATSIPSMRPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFD-TSDPKEEKAMIF  191 (573)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~-~~~~~~~~~r~~  191 (573)
                      +..++......+                    .......+++.-.+.+++......+..++..|+.+ +++      |.+
T Consensus        90 ~~~llf~~p~~~--------------------~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~e------R~~  143 (473)
T PRK10429         90 VLFLLFSAHLFE--------------------GTAQYVFVCVTYILWGMTYTIMDIPFWSLVPTLTLDKRE------REQ  143 (473)
T ss_pred             HHHHHHcCCCCC--------------------ccHHHHHHHHHHHHHHHHHHHHcchHHhhhHHhCCCHHH------HHH
Confidence            765554321111                    00123334444556677788888888899999885 444      999


Q ss_pred             HHHHHHHHHHhhhHHHHHHhhhhhc-------ccchhHHHHHHHHHHHHHHHHHHhcCccccccCCCCCchhHHHHHHHH
Q 008231          192 FFNRFYFAISIGSLFAVIVLVYVQD-------NVGRGWGYGISAGTMVVAAAILLIGTPWYRFKKPRGSPLTVIWRVLLL  264 (573)
Q Consensus       192 ~~~~~~~~~~ig~~~~~~~~~~l~~-------~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (573)
                      ..++.+...++|+.+.+.+...+.+       ..||+....+.++..++..+..++..+|.... ++.++          
T Consensus       144 l~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~e~~~~-~~~~~----------  212 (473)
T PRK10429        144 LVPYPRFFASLAGFVTAGFTLPFVNYVGGGDRGFGFQMFTLVLIAFFIVSTIITLRNVHEVYSS-DNQVS----------  212 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHHcCceecCCc-ccccc----------
Confidence            8888777778876666555443322       12455555544444444333333323321100 00000          


Q ss_pred             HHhccCCCCCCCCCcchhcccccCCCCCccchhhhhhhhhhhhhhccccCCcccccchhhHHHHHHHHhHHHHHHHHHHH
Q 008231          265 AWKKRSHPYPDHPSLLNEYQNAKVPHTEKFKCLDKAAIIEDNAVANENKNNSWIVSTVTEVEEVKMVLKLLPIWATCILF  344 (573)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  344 (573)
                                              .++++.+..+..                      ....+.|.+...+...+.....
T Consensus       213 ------------------------~~~~~~~~~~~~----------------------~~~~~n~~~~~ll~~~~~~~~~  246 (473)
T PRK10429        213 ------------------------AEGSHLTLKDIV----------------------ALIYKNDQLSCLLGMALAYNIA  246 (473)
T ss_pred             ------------------------ccccCCCHHHHH----------------------HHHhcCHHHHHHHHHHHHHHHH
Confidence                                    000000000000                      0011112222222111111122


Q ss_pred             HHHhhcccchhhhhhhccccccccceecccccchhhHHHHHHHHHhhhhhhhhhhcccccccCCCchHHHHHHHHHHHHH
Q 008231          345 WTVYSQMTTFTVEQATFMNRKIGSFTVPSGSLSAFLFITILLFTSLNEKVFVPLARKITHSIQGMTSLQRVGTGLIFSVI  424 (573)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~i  424 (573)
                      .........++.....+ +.     . ..+.+..+..+..++..++.+++.+|+.+|.           .+..+.++..+
T Consensus       247 ~~~~~~~~~y~~~y~~~-~~-----~-~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~-----------~~~~~~~~~~~  308 (473)
T PRK10429        247 SNIINGFAIYYFTYVIG-DA-----D-LFPYYLSYAGAANLVTLILFPRLVKSLSRRI-----------LWAGASIFPVL  308 (473)
T ss_pred             HHHHhhheeeEEEEECC-CH-----H-HHHHHHHHHHHHHHHHHHHHHHHHHHcCcHH-----------HHHHHHHHHHH
Confidence            22222222222211101 00     0 1122333444556666777777765554442           24445555444


Q ss_pred             HHHHHHHHHHHHHhhcccCCcccchhHHHHHHHHHHHHHHhhhhhhhheeecccC-------chhHHHHHHHHHHHHHHH
Q 008231          425 AMIVSAVIEQQRRETSVQKHIQISAFWLVPQYFLVGAGEAFVYVGQLEFFIREGP-------ERMKSMSTGLFLSAISMG  497 (573)
Q Consensus       425 ~~i~~~~~~~~~~~~~~~~~~~~~~~~lv~~~~l~g~~~~~~~~~~~~~~~~~~p-------~~~rg~~~gi~~~~~~lg  497 (573)
                      +.+......         .......+.+++..++.+++.+...+..+++..|..+       +|..|...|...+...+|
T Consensus       309 ~~~~~~~~~---------~~~~~~~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~  379 (473)
T PRK10429        309 SCGVLLLMG---------LAAPHNALLIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGG  379 (473)
T ss_pred             HHHHHHHHh---------ccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHH
Confidence            444332210         0011234445556677888888888888888988866       566788999999999999


Q ss_pred             HHHHHHHHHHHhhhh
Q 008231          498 MFVSSMLVSIVDKIT  512 (573)
Q Consensus       498 ~~ig~~~~~~i~~~~  512 (573)
                      ..+++.+.|.+.+..
T Consensus       380 ~al~~~i~g~~l~~~  394 (473)
T PRK10429        380 SAFAAFFIGVVLGLI  394 (473)
T ss_pred             HHHHHHHHHHHHHHc
Confidence            999999999988654

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=99.77  E-value=2.1e-16  Score=172.75  Aligned_cols=141  Identities=15%  Similarity=0.017  Sum_probs=126.8

Q ss_pred             hhhcCCCchhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCccccccccc
Q 008231           61 VGDLHLSSAKSATIVTNFMGTLNLLGLLGGFLADAKLGRYLTVAIFASVTALVVGLLTSATSIPSMRPPQCDDYRRKHHQ  140 (573)
Q Consensus        61 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (573)
                      .+..+.+.....+..+++.++..++++++|+++||+ |||+++++++++.+++.++.+++                    
T Consensus       110 ~~~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~-GRk~~~~~~~~~~~i~~~~~a~a--------------------  168 (521)
T KOG0255|consen  110 WNLVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRF-GRKPVLLVSLLLFIIFGILTAFA--------------------  168 (521)
T ss_pred             hceeeCcHhHHHHHHHHHHHHHHHHHhhheehHhhc-ccHHHHHHHHHHHHHHHHHHHHh--------------------
Confidence            356677888889999999999999999999999997 99999999999999999999987                    


Q ss_pred             cccchhhHHHHHHHHHHHHHhcCccccccccccccCCCCCCCchHHHhHHHHHHHHHHHHHhhhHHHHHHhhhhhcccch
Q 008231          141 CIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKAMIFFFNRFYFAISIGSLFAVIVLVYVQDNVGR  220 (573)
Q Consensus       141 ~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~~~~~l~~~~g~  220 (573)
                            +++..+++.|++.|++.++...+...+++|+++++.      |+.+..+ ......++.+++.+++++..  +|
T Consensus       169 ------~~~~~~~~~Rfl~G~~~~~~~~~~~~~~~E~~~~~~------R~~~~~~-~~~~~~~~~~~~~~~a~~~~--~W  233 (521)
T KOG0255|consen  169 ------PNYWMFLIFRFLSGFFGSGPLTVGFGLVAEIVSPKQ------RGLALTL-GGFFFVGGLMLPAGAAYITR--DW  233 (521)
T ss_pred             ------CcHHHHHHHHHHHHhhccchhHHhHhhheeecCcch------hhHHHHH-HHHHHHHHHHHHHHHHHHHh--hH
Confidence                  478899999999999999999999999999999999      9999999 77888888899999999887  89


Q ss_pred             hHHHHHHHHHHHHHHHH
Q 008231          221 GWGYGISAGTMVVAAAI  237 (573)
Q Consensus       221 ~~~f~~~~~~~~~~~~~  237 (573)
                      |+.+++..+..++.++.
T Consensus       234 r~~~~~~~~~~~~~~~~  250 (521)
T KOG0255|consen  234 RWLFWIISIPSGLFLLL  250 (521)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99999877766555444

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=99.77  E-value=6.4e-16  Score=152.71  Aligned_cols=351  Identities=14%  Similarity=0.139  Sum_probs=245.4

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHH
Q 008231           32 WLAAGLILGTELSERICAMGISMNLVTYLVGDLHLSSAKSATIVTNFMGTLNLLGLLGGFLADAKLGRYLTVAIFASVTA  111 (573)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~  111 (573)
                      +..+..+.++.+--+-..-++- .+..-+.+++|+|.+.+|.+.++-.+...+..++..+++.|+ |.++.+..++++.+
T Consensus        11 ~~li~gIvlia~NLR~~itsvg-PLL~~Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~-g~er~l~~~Llli~   88 (395)
T COG2807          11 LLLLAGIVLIAFNLRPAITSVG-PLLDEIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRF-GEERSLFLALLLIA   88 (395)
T ss_pred             hHHHHHHHHHHhccchhhhhhh-hhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHH-hhHHHHHHHHHHHH
Confidence            3344444445554455554443 345677889999999999999999999999999999999998 99999999999999


Q ss_pred             HHHHHHHhhccCCCCCCCCCccccccccccccchhhHHHHHHHHHHHHHhcCccccccccccccCCCCCCCchHHHhHHH
Q 008231          112 LVVGLLTSATSIPSMRPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKAMIF  191 (573)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~  191 (573)
                      +|..+=...                           +...++.+-.+.|.|.+..+...++++-+.||++       .+.
T Consensus        89 ~G~~iR~~~---------------------------~~~~L~~gt~l~G~gIav~nVLLPslIK~~Fpk~-------~~~  134 (395)
T COG2807          89 AGILIRSLG---------------------------GLPLLFLGTLLAGAGIAVINVLLPSLIKRDFPKR-------VGL  134 (395)
T ss_pred             HHHHHHhcc---------------------------cHHHHHHHHHHHHhhHHHHHHhhhHHHHhhcccc-------hhh
Confidence            998887763                           4568899999999999999999999999999976       588


Q ss_pred             HHHHHHHHHHhhhHHHHHHhhhhhccc-chhHHHHHHHHHHHHHHHHHHhcCccccccCCCCCchhHHHHHHHHHHhccC
Q 008231          192 FFNRFYFAISIGSLFAVIVLVYVQDNV-GRGWGYGISAGTMVVAAAILLIGTPWYRFKKPRGSPLTVIWRVLLLAWKKRS  270 (573)
Q Consensus       192 ~~~~~~~~~~ig~~~~~~~~~~l~~~~-g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (573)
                      .+++|..+.++|+.+++.+...+.+.. |||....+-+...+++++.++....+.+....+...                
T Consensus       135 mtglYs~sl~~~aaLaa~lavpla~~~~gW~~aL~~WAl~allAl~~WlPq~~r~~~~~~~~~~----------------  198 (395)
T COG2807         135 MTGLYSTSLGAGAALAAALAVPLAQHSGGWRGALGFWALLALLALLIWLPQALREQAASIATKL----------------  198 (395)
T ss_pred             HHhHHHHHHHHHHHHHhhhhhHHHHhhccHHHHHHHHHHHHHHHHHHHhhhccccccccccccc----------------
Confidence            899999999999999999999998877 799988877777777777665432211100000000                


Q ss_pred             CCCCCCCCcchhcccccCCCCCccchhhhhhhhhhhhhhccccCCcccccchhhHHHHHHHHhHHHHHHHHHHHHHHhhc
Q 008231          271 HPYPDHPSLLNEYQNAKVPHTEKFKCLDKAAIIEDNAVANENKNNSWIVSTVTEVEEVKMVLKLLPIWATCILFWTVYSQ  350 (573)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  350 (573)
                                          .                    +..+-|+        +...+...+-+-..+..+|..+.+
T Consensus       199 --------------------~--------------------~~~~vw~--------~~~aW~vtLfmGlqS~~~Y~~~~W  230 (395)
T COG2807         199 --------------------V--------------------SVRKVWR--------SPLAWQVTLFMGLQSLLYYIVIGW  230 (395)
T ss_pred             --------------------c--------------------ccccccc--------CchhHHHHHHHHhhHHHHHHHHHH
Confidence                                0                    0011221        111222223345667788888888


Q ss_pred             ccchhhhhhhccccccccceecccccchhhHHHHHHHHHhhhhhhhhhhcccccccCCCchHHHHHHHHHHHHHHHHHHH
Q 008231          351 MTTFTVEQATFMNRKIGSFTVPSGSLSAFLFITILLFTSLNEKVFVPLARKITHSIQGMTSLQRVGTGLIFSVIAMIVSA  430 (573)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~i~~i~~~  430 (573)
                      ++.++.++.  ++.      ...+.+.++..+..+....+.-.+..|..++          .........++.++++.+.
T Consensus       231 LP~ili~~G--~sa------~~aG~llsl~~l~~~~~~ll~P~la~R~~n~----------r~~~~~~~~~~l~G~~G~~  292 (395)
T COG2807         231 LPAILIDRG--LSA------AEAGSLLSLMQLAQLPTALLIPLLARRSKNQ----------RPLVVLALLLMLVGLVGLL  292 (395)
T ss_pred             HHHHHHHcC--CCH------HHhhhHHHHHHHHHHHHHHHHHHHHHHhccc----------chHHHHHHHHHHHHHHHHH
Confidence            888776653  221      1345555555555555555555554332111          1225556666667777666


Q ss_pred             HHHHHHHhhcccCCcccchhHHHHHHHHHHHHHHhhhhhhhheeecccC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008231          431 VIEQQRRETSVQKHIQISAFWLVPQYFLVGAGEAFVYVGQLEFFIREGP-ERMKSMSTGLFLSAISMGMFVSSMLVSIVD  509 (573)
Q Consensus       431 ~~~~~~~~~~~~~~~~~~~~~lv~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~rg~~~gi~~~~~~lg~~ig~~~~~~i~  509 (573)
                      +..           .+..++|    .++.|+|.+..+|...+++....+ ++..+.-.|+.....++=..+||.+.|++.
T Consensus       293 ~~P-----------~~~~~lw----~~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lh  357 (395)
T COG2807         293 LAP-----------GQLPILW----ALLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLH  357 (395)
T ss_pred             Hhh-----------hhHHHHH----HHHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHH
Confidence            542           1223333    377888888888888888877764 566777788888888888889999999999


Q ss_pred             hhhccCc
Q 008231          510 KITNKHW  516 (573)
Q Consensus       510 ~~~~~~w  516 (573)
                      |.++ +|
T Consensus       358 Da~g-sw  363 (395)
T COG2807         358 DATG-SW  363 (395)
T ss_pred             HhcC-Ch
Confidence            8764 44

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.77  E-value=1.1e-16  Score=158.31  Aligned_cols=342  Identities=15%  Similarity=0.135  Sum_probs=203.9

Q ss_pred             hcCCCchhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCccccccccccc
Q 008231           63 DLHLSSAKSATIVTNFMGTLNLLGLLGGFLADAKLGRYLTVAIFASVTALVVGLLTSATSIPSMRPPQCDDYRRKHHQCI  142 (573)
Q Consensus        63 ~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  142 (573)
                      ..+.+..-.|.+-+.|++..++.++.+|.++||+ |||.+++++.+..++...+.+.+                      
T Consensus        62 ~~~~~~~yaGflGSsF~ilQ~~sS~~~G~~SD~y-GRkpvll~c~~~va~s~ll~~~S----------------------  118 (451)
T KOG2615|consen   62 PDGASVFYAGFLGSSFSILQFISSPLWGCLSDRY-GRKPVLLACLIGVALSYLLWALS----------------------  118 (451)
T ss_pred             cccccchhhhhHhhHHHHHHHHhhhhhhhhhhhh-CchHHHHHHHHHHHHHHHHHHHH----------------------
Confidence            3445667789999999999999999999999999 99999999999999988888886                      


Q ss_pred             cchhhHHHHHHHHHHHHHhcCccccccccccccCCCCCCCchHHHhHHHHHHHHHHHHHhhhHHHHHHhhhhhc---ccc
Q 008231          143 EANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKAMIFFFNRFYFAISIGSLFAVIVLVYVQD---NVG  219 (573)
Q Consensus       143 ~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~~~~~l~~---~~g  219 (573)
                          .++..+.++|++.|+.-|-. ..+.++++|.+++++      |+.+++....+..+|.++||.++|++.+   ..|
T Consensus       119 ----~~F~afv~aR~l~Gi~kgnl-~v~rAiisdV~sek~------r~l~ms~v~~a~~lGfilGPmIGgyla~f~~~~g  187 (451)
T KOG2615|consen  119 ----RNFAAFVLARFLGGIFKGNL-SVIRAIISDVVSEKY------RPLGMSLVGTAFGLGFILGPMIGGYLAQFSSISG  187 (451)
T ss_pred             ----HHHHHHHHHHHhhhhccCch-HHHHHHHHhhcChhh------ccceeeeeehhhhcchhhcchhhhHHHhhHhhhc
Confidence                36766777799999999887 467799999999988      9999999999999999999999999987   222


Q ss_pred             hhHHHHHHHHH-HHHH---HHHHHhcCccccccCCCC-CchhHHHHHHHHHHhccCCCCCCCCCcchhcccccCCCCCcc
Q 008231          220 RGWGYGISAGT-MVVA---AAILLIGTPWYRFKKPRG-SPLTVIWRVLLLAWKKRSHPYPDHPSLLNEYQNAKVPHTEKF  294 (573)
Q Consensus       220 ~~~~f~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (573)
                       ..+|..+... .+.+   ...+.+..||.-+.+++. ++.                       .+.+..++. ......
T Consensus       188 -~~p~alP~~~v~i~a~~~v~~~~~~lpETL~~rk~~~~~~-----------------------~~~~~~~~~-~~~~~~  242 (451)
T KOG2615|consen  188 -SYPFALPCLLVFILAAGDVTFFPWFLPETLPLRKRNDEHS-----------------------TLQEAADDR-LALLKF  242 (451)
T ss_pred             -cCchHHHHHHHHHHHHHHHHHHHHhCCccccchhhccccc-----------------------chhhhhhhh-hhhcch
Confidence             2233332221 1111   222333344432211111 000                       000000000 000001


Q ss_pred             chhhhhhhhhhhhhhccccCCcccccchhhHHHHHHHHhHHHHHHHHHHHHHHhhcccchhhhhhhcc-ccccccceecc
Q 008231          295 KCLDKAAIIEDNAVANENKNNSWIVSTVTEVEEVKMVLKLLPIWATCILFWTVYSQMTTFTVEQATFM-NRKIGSFTVPS  373 (573)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  373 (573)
                      ++..+....         ...|.+    +.....+.+          ...+..|......+-.....+ ...++-...+.
T Consensus       243 ~~~~~v~~l---------rn~p~~----~~i~~~~i~----------~l~~~ly~~l~s~~~~t~~~l~~~rfg~ss~~~  299 (451)
T KOG2615|consen  243 ARIFKVAAL---------RNPPLL----DFISVLRIF----------GLHYFLYLELFSGLENTVLFLTHGRFGYSSMQQ  299 (451)
T ss_pred             hhhhhhhhh---------cCcccc----chHHHHHHH----------HHHHHHHHHHHHHHHhhHHHhhcCccCCChhhh
Confidence            111111110         001110    000111111          111111111111000000001 01111113345


Q ss_pred             cccchhhHHHHHHHHHhhhhhhhhhhcccccccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCcccchhHHH
Q 008231          374 GSLSAFLFITILLFTSLNEKVFVPLARKITHSIQGMTSLQRVGTGLIFSVIAMIVSAVIEQQRRETSVQKHIQISAFWLV  453 (573)
Q Consensus       374 ~~~~~~~~~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~lv  453 (573)
                      +.+.+...+..++.+...    .|..+|..+     .....+...++++...++++....              ....+.
T Consensus       300 G~vl~~tGl~m~~~ql~~----~~~l~~~~~-----~~~a~l~~~l~~~vP~~llls~~~--------------~~~~l~  356 (451)
T KOG2615|consen  300 GKVLSTTGLLMLVIQLAL----VPILPRYKG-----NIKAVLLFSLLLIVPAFLLLSLAR--------------TPVVLY  356 (451)
T ss_pred             eeeeehhhHHHHHHHHhc----ccccccccc-----chhhHHHHHHHHHHHHHHHHhccc--------------cchhhh
Confidence            555555555555544333    222333221     133345556666666665555431              223456


Q ss_pred             HHHHHHHHHHHhhhhhhhheeecccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008231          454 PQYFLVGAGEAFVYVGQLEFFIREGPERMKSMSTGLFLSAISMGMFVSSMLVSIVD  509 (573)
Q Consensus       454 ~~~~l~g~~~~~~~~~~~~~~~~~~p~~~rg~~~gi~~~~~~lg~~ig~~~~~~i~  509 (573)
                      ....+..+..+...+....++....|++.||+..|+......++-++||.+.|.+.
T Consensus       357 ~~s~l~sf~~A~~vt~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~i~  412 (451)
T KOG2615|consen  357 LGSTLKSFSTASVVTCLTSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSGVIF  412 (451)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhheeE
Confidence            67778888888888888999999999999999999999999999999999998886

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=99.77  E-value=3.7e-16  Score=153.48  Aligned_cols=437  Identities=14%  Similarity=0.076  Sum_probs=244.9

Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHH
Q 008231           31 GWLAAGLILGTELSERICAMGISMNLVTYLVGDLHLSSAKSATIVTNFMGTLNLLGLLGGFLADAKLGRYLTVAIFASVT  110 (573)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~  110 (573)
                      +|....+.-+..+.+.+ .....+.+.+-+....|++..|..++......+..+++..+|.++|++ ||||...+...+.
T Consensus        76 q~yl~~~ag~gwmad~m-~~m~~s~i~~~l~~~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~~-grr~~f~~T~l~t  153 (528)
T KOG0253|consen   76 QWYLFFVAGMGWMADAM-EMMLLSLILPALDEVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADTI-GRRKGFNLTFLVT  153 (528)
T ss_pred             hhhHHHHhhhHHHHHHH-HHHHHHHHHHHHHhhhchhhhhhhHHHHHHHhhhhhhhhhhheehhhh-hcchhhhhhHHHH
Confidence            33444555555555543 345667777778888999999999999999999999999999999998 9999999888877


Q ss_pred             HHHHHHHHhhccCCCCCCCCCccccccccccccchhhHHHHHHHHHHHHHhcCccccccccccccCCCCCCCchHHHhHH
Q 008231          111 ALVVGLLTSATSIPSMRPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKAMI  190 (573)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~  190 (573)
                      .+..++...+                          +++..+++.|.+.|+|.|+ .|...++-.|..|...      |.
T Consensus       154 ~v~~~is~~s--------------------------pnf~~L~~f~~l~~~g~gg-~pv~~~~yle~lp~~~------r~  200 (528)
T KOG0253|consen  154 GVFGVISGAS--------------------------PNFASLCVFRALWGFGVGG-LPVDSAIYLEFLPSSH------RW  200 (528)
T ss_pred             HHHHHhhcCC--------------------------CCeehhhHHHHHHhccCCC-ccHhHHHHHHhccCcC------CC
Confidence            7777766665                          4778999999999999999 7888888899888887      77


Q ss_pred             HHHHHHHHHHHhhhHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHHHHhcCccccc-cCCCCCchhHHHHHHHHHHhcc
Q 008231          191 FFFNRFYFAISIGSLFAVIVLVYVQDNVGRGWGYGISAGTMVVAAAILLIGTPWYRF-KKPRGSPLTVIWRVLLLAWKKR  269 (573)
Q Consensus       191 ~~~~~~~~~~~ig~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  269 (573)
                      .-.-.. ..+.+|.++...+.-.+..+.||||-...+.....++....+ ..++.++ .-.++++.+.+ ..+-+..+..
T Consensus       201 ~~~V~~-~~waig~v~ea~law~vm~~~gwr~~l~~~~~pl~~~a~f~~-w~~ESpRf~~~~G~~~kAl-etL~kiArmN  277 (528)
T KOG0253|consen  201 LLTVMS-FFWAIGQVFEALLAWGVMSNFGWRYLLFTSSTPLMFAARFLV-WVYESPRFYLAKGDDYKAL-ETLHKIARMN  277 (528)
T ss_pred             cchhHH-HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHh-hcccCcchhhhcCChHHHH-HHHHHHHHhc
Confidence            666555 678999999988887777889999987766654444443333 3333322 22233333322 2222333333


Q ss_pred             CCCCCCCCCcchhcccccCCCCCccchhhhhhhhhhhhhhccccCCcccccchhhHHHHHHHHhHHHHHHHHHHHHHHhh
Q 008231          270 SHPYPDHPSLLNEYQNAKVPHTEKFKCLDKAAIIEDNAVANENKNNSWIVSTVTEVEEVKMVLKLLPIWATCILFWTVYS  349 (573)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  349 (573)
                      +...|......+.+ ++   .+++....++.+..  .   ..+.......+-.  -+-+|+.+.+...++.+...|...-
T Consensus       278 g~qlplgvl~~s~~-~~---~e~e~~~~~~~~~~--a---~ke~rg~~~nLls--p~lrkttlllw~iwfgnafsyyg~V  346 (528)
T KOG0253|consen  278 GKQLPLGVLESSAI-DR---QEQEESDLDDSKSS--A---AKEVRGGTTNLLS--PKLRKTTLLLWRIWFGNAFSYYGSV  346 (528)
T ss_pred             CCCCCcceeeeehh-hh---hhhhhhchhhhhhc--c---ccccccchHhhcC--hHHHHHHHHHHHHHHhhHHHHHHHH
Confidence            33333222111111 00   00001111111100  0   0000001100000  0112333333334433333222222


Q ss_pred             cccchhhh-----------hhhccccccc-cceeccccc-chhhHHHHHHHHHhhhhhhhhhhcccccccCCCchHHHHH
Q 008231          350 QMTTFTVE-----------QATFMNRKIG-SFTVPSGSL-SAFLFITILLFTSLNEKVFVPLARKITHSIQGMTSLQRVG  416 (573)
Q Consensus       350 ~~~~~~~~-----------~~~~~~~~~~-~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~  416 (573)
                      ..++-+..           ...++..+.. ......... ..+.++.-.....+..+++++++||..           +.
T Consensus       347 Llttelfqsgd~c~~~~r~~p~e~e~~~~c~~s~~~dYrdllitslaefPGlLIt~~iverlGRKkT-----------Ma  415 (528)
T KOG0253|consen  347 LLTTELFQSGDACPLYNRFLPTELETRANCPLSVAKDYRDLLITSLAEFPGLLITGVIVERLGRKKT-----------MA  415 (528)
T ss_pred             HHHHHHHhccCccccchhcchhHHHhhhcCCccchhHHHHHHHHHHhhCCchhHHHHHHHHhcchhH-----------HH
Confidence            22211110           0001111000 000000000 001111111112233455555577643           66


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcccCCcccchhHHHHHHHHHHHHHHhhhhhhhheeecccCchhHHHHHHHHHHHHHH
Q 008231          417 TGLIFSVIAMIVSAVIEQQRRETSVQKHIQISAFWLVPQYFLVGAGEAFVYVGQLEFFIREGPERMKSMSTGLFLSAISM  496 (573)
Q Consensus       417 ~g~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~lv~~~~l~g~~~~~~~~~~~~~~~~~~p~~~rg~~~gi~~~~~~l  496 (573)
                      ..+++..+..+.+....          +......++..+    -+.....+...|.|..|++|...|+++.|....+..+
T Consensus       416 l~l~~f~iflfll~~c~----------~rn~~tvllf~a----rafisg~fqvaYvYtPEVyPTavRatgvGtcSsmaRI  481 (528)
T KOG0253|consen  416 LSLILFGIFLFLLTTCK----------TRNAYTVLLFTA----RAFISGAFQVAYVYTPEVYPTAVRATGVGTCSSMARI  481 (528)
T ss_pred             HHHHHHHHHHHHHHHhc----------CcchhHHHHHHH----HHHHhchheEEEEecCcccchhhhhcchhhhhhHHhh
Confidence            66666655554443321          111122222222    2333344577899999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhhccCccccccccchhhHHHHHHHHHHHHHHHHHHHHHhhcchhh
Q 008231          497 GMFVSSMLVSIVDKITNKHWLRSNLNKGKLNNFYWLLAVLGLLNFMVFLFFAMKHQYNV  555 (573)
Q Consensus       497 g~~ig~~~~~~i~~~~~~~w~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~  555 (573)
                      |+++.|++. +..+.+             ......+.+++++++++...++.-++|+|.
T Consensus       482 ggI~~p~iA-~~~e~s-------------~sl~i~vy~~~~ilagIavcffPiEtkGR~  526 (528)
T KOG0253|consen  482 GGIFSPVIA-MRAELS-------------TSLPIFVYGALFILAGIAVCFFPIETKGRS  526 (528)
T ss_pred             hhhhhhHHH-HHhccc-------------eeehHHHHHHHHHHHHHHheeeeeccCCCC
Confidence            999999998 444321             123345677788888887777777777664

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=99.77  E-value=1.9e-17  Score=167.48  Aligned_cols=439  Identities=13%  Similarity=0.022  Sum_probs=235.6

Q ss_pred             cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-------CCCchhhhHHHHHHHHHHHHHHhHHHHHhhhccchh
Q 008231           28 KTGGWLAAGLILGTELSERICAMGISMNLVTYLVGDL-------HLSSAKSATIVTNFMGTLNLLGLLGGFLADAKLGRY  100 (573)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~-------~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr  100 (573)
                      .+++.+.+.+.-++-+.+.++.+.+..+.+.+-.-..       |.++...+.+..+..++..+++++.|+++||+ |||
T Consensus        36 qw~~fk~i~iAG~GfftDsYDlF~I~lVt~il~~lY~~~~~~~g~~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~-GRK  114 (538)
T KOG0252|consen   36 QWKHFKAIIIAGMGFFTDSYDLFSISLVTKILGYLYYHGDESGGHYPSGVLALVNAAALVGTIFGQLFFGWLGDKF-GRK  114 (538)
T ss_pred             hHHHHHHHHHhhhhhcccchhhhhHHHHHHHHHHHhcCCCCCCCcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhh-cch
Confidence            3445566777777777888887766555544322222       35667788888999999999999999999998 999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhccCCCCCCCCCccccccccccccchhhHHHHHHHHHHHHHhcCccccccccccccCCCCC
Q 008231          101 LTVAIFASVTALVVGLLTSATSIPSMRPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDT  180 (573)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~  180 (573)
                      +++...++++.+++++++++...+                   +.-.-++.++..|++.|+|.|+-+|...+..+|...+
T Consensus       115 ~vYG~~liImIi~t~~~~~s~~~~-------------------~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~  175 (538)
T KOG0252|consen  115 KVYGKELIIMIICSALSGLSVGTT-------------------SPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANK  175 (538)
T ss_pred             hhhhHHHHHHHHHHHHhccCCCCC-------------------CCcchhhHHHHHHHHhhccccCCCcchHHHhhhhhhh
Confidence            999999999999999777753222                   1113567788999999999999999999999998887


Q ss_pred             CCchHHHhHHHHHHH----HHHHHHhhhHHHHHHhhhhhccc-----------chhHHHHHHHHHHHHHHHHHHhcCccc
Q 008231          181 SDPKEEKAMIFFFNR----FYFAISIGSLFAVIVLVYVQDNV-----------GRGWGYGISAGTMVVAAAILLIGTPWY  245 (573)
Q Consensus       181 ~~~~~~~~r~~~~~~----~~~~~~ig~~~~~~~~~~l~~~~-----------g~~~~f~~~~~~~~~~~~~~~~~~~~~  245 (573)
                      +.      ||...+.    +.++.-.|++++.++.+-.-...           =||..|.+.++..++.. .+-+..|+.
T Consensus       176 ~~------RGa~iaavFa~Qg~GilaG~ivt~Iv~~~fe~~~~~~~~~~~ld~vWRl~~glg~vpa~~~l-y~Rl~M~Et  248 (538)
T KOG0252|consen  176 KT------RGAFIAAVFAMQGFGILAGGIVALIVSAIFEKIFNGPSTYPHLDGVWRIIFGLGAVPALLVL-YFRLKMPET  248 (538)
T ss_pred             cc------ccceeEEEEEecchhHhhccHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHHHH-HhhhcCCcc
Confidence            77      7776654    45555555555555444332211           27777765554332211 111222222


Q ss_pred             cccCC-CCCchhHHHHHHHHHHhccCCCCCCCCCcchhcccccCCCCCccchhhhhhhhhhhhhhccccCCcccccchhh
Q 008231          246 RFKKP-RGSPLTVIWRVLLLAWKKRSHPYPDHPSLLNEYQNAKVPHTEKFKCLDKAAIIEDNAVANENKNNSWIVSTVTE  324 (573)
Q Consensus       246 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (573)
                      ++-.. ......       .+.++ ..+. .+    ...+++.....+.                  ..+..+.-+....
T Consensus       249 ~~Y~al~~~~~~-------~a~~d-~~k~-~~----~~~~~~~~~~~~~------------------~~~~~~~~~F~~~  297 (538)
T KOG0252|consen  249 ARYTALVSKKLK-------QAAGD-MKKV-LS----VDIEAESTAESDV------------------PPPSNSFGLFSRL  297 (538)
T ss_pred             hhHHHHhhcCHh-------hhhhc-cccc-cc----cccchhhccccCC------------------CCcccccchHHHH
Confidence            11110 000000       00000 0000 00    0000000000000                  0000010000001


Q ss_pred             HHHH--HHHHhHHHHHHHHHHHHHHhhcccchhhhhhhcccccccccee-cccc----cchhhHHHHHHHHHh-----hh
Q 008231          325 VEEV--KMVLKLLPIWATCILFWTVYSQMTTFTVEQATFMNRKIGSFTV-PSGS----LSAFLFITILLFTSL-----NE  392 (573)
Q Consensus       325 ~~~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~----~~~~~~~~~l~~~~~-----~~  392 (573)
                      ...+  +.++      ..+..++..-...++.-..+..-++ .. ++.- ....    -.+........++.+     ..
T Consensus       298 f~~~hg~~Ll------gt~~~WFllDiafy~~nL~~s~I~~-~i-g~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv  369 (538)
T KOG0252|consen  298 FLRWHGKHLL------GTAGTWFLLDIAFYGQNLFQSVIFS-AI-GVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTV  369 (538)
T ss_pred             HHHHHHHHHH------HHHHHHHhhhhhhhccccHHHHHHH-hh-ccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEE
Confidence            1111  1222      1122222211111111111110000 00 0000 0000    011111111122211     22


Q ss_pred             hhhhhhhcccccccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCcccc-hhHHHHHHHHHHHHHHhhhhhhh
Q 008231          393 KVFVPLARKITHSIQGMTSLQRVGTGLIFSVIAMIVSAVIEQQRRETSVQKHIQIS-AFWLVPQYFLVGAGEAFVYVGQL  471 (573)
Q Consensus       393 ~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~-~~~lv~~~~l~g~~~~~~~~~~~  471 (573)
                      .++|.++|++           .-+.|++++.+.+++++...          .+... ...++...+.+.++...-+....
T Consensus       370 ~~id~iGRk~-----------iq~~GF~~~~i~~~~~~~~y----------~~~~~~~Gf~v~y~l~~ff~NFGPn~ttf  428 (538)
T KOG0252|consen  370 YFIDIIGRKY-----------IQLMGFFIMTIFFFVIAGPY----------NQLENTIGFVVLYSLTFFFGNFGPNATTF  428 (538)
T ss_pred             EEeehhhhHH-----------HHHhhHHHHHHHHHHHcCCc----------ccccccCceeehHHHHHHHHhcCCCceeE
Confidence            3344445543           25778888888877776542          10111 11122222333344444456667


Q ss_pred             heeecccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCccccccccchhhHHHHHHHHHHHHHHHHHHHHHhhc
Q 008231          472 EFFIREGPERMKSMSTGLFLSAISMGMFVSSMLVSIVDKITNKHWLRSNLNKGKLNNFYWLLAVLGLLNFMVFLFFAMKH  551 (573)
Q Consensus       472 ~~~~~~~p~~~rg~~~gi~~~~~~lg~~ig~~~~~~i~~~~~~~w~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~  551 (573)
                      .+..|.+|.+.||+..|+...+.-+|.+++.....+..+.   . .+.   ..+....++++++++.++.++++++ +++
T Consensus       429 ivpaE~FParvR~t~hGIsAA~GK~GAivg~~~F~~~t~~---~-yp~---~~g~~~v~~i~~~~~~~gi~~T~l~-pEt  500 (538)
T KOG0252|consen  429 IVPAEIFPARVRSTCHGISAASGKAGAIVGAFGFLYLTDH---N-YPP---NIGVRNVFIILAGCMLLGILFTLLI-PET  500 (538)
T ss_pred             EeehhhchHHHhhhhhhHHHHhccchHHHHHHHhhHhhhc---c-CCc---cccchHHHHHHHHHHHHhHheeEEe-ecc
Confidence            7889999999999999999999999999999998877652   1 111   2334578899999999888777665 488


Q ss_pred             chhhhccccC
Q 008231          552 QYNVQHRVKG  561 (573)
Q Consensus       552 ~~~~~~~~~~  561 (573)
                      ++++.++...
T Consensus       501 k~~~leei~~  510 (538)
T KOG0252|consen  501 KGKSLEEISN  510 (538)
T ss_pred             cccCHHHhcC
Confidence            8887766543

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=99.76  E-value=6.5e-16  Score=161.78  Aligned_cols=384  Identities=13%  Similarity=0.086  Sum_probs=214.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHH
Q 008231           38 ILGTELSERICAMGISMNLVTYLVGDLHLSSAKSATIVTNFMGTLNLLGLLGGFLADAKLGRYLTVAIFASVTALVVGLL  117 (573)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~  117 (573)
                      +....++..+.+-...++++.|+++ .|+|..|.|.+.++..+...+.++++|.++||+..+||.+.+..++.++...+.
T Consensus         7 Ls~~~f~~f~~~G~~~p~~~~~L~~-~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~   85 (400)
T PF03825_consen    7 LSLMYFLYFFAYGAFLPYLPLYLES-RGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLL   85 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHH
Confidence            4444455555555667889999985 689999999999999999999999999999998456777777766666655444


Q ss_pred             HhhccCCCCCCCCCccccccccccccchhhHHHHHHHHHHHHHhcCccccccccccccCCCCCCCchHHHhHHHHHHHHH
Q 008231          118 TSATSIPSMRPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKAMIFFFNRFY  197 (573)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~  197 (573)
                      ....                          +++.+++..++..+......|...++..+...+        ++.-+|..+
T Consensus        86 ~~~~--------------------------~f~~~~~~~~l~~~~~~p~~pl~dsi~~~~~~~--------~~~~YG~iR  131 (400)
T PF03825_consen   86 AFSS--------------------------SFWWLFVIMLLFSFFFSPTMPLSDSIALSYLGD--------RGKDYGRIR  131 (400)
T ss_pred             HHhc--------------------------cHHHHHHHHHHHHHHHccHHHHHHHHHHHHccc--------ccCCCCcch
Confidence            4432                          455666666667777676677777776666553        334456666


Q ss_pred             HHHHhhhHHHHHH-hhhhhcccc---hhHHHHHHHHHHHHHHHHHHhcCccccccCCCCCchhHHHHHHHHHHhccCCCC
Q 008231          198 FAISIGSLFAVIV-LVYVQDNVG---RGWGYGISAGTMVVAAAILLIGTPWYRFKKPRGSPLTVIWRVLLLAWKKRSHPY  273 (573)
Q Consensus       198 ~~~~ig~~~~~~~-~~~l~~~~g---~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (573)
                      ...++|.+++... ++++....+   ..+.+++.+...++.... .+..|+.+.++..+++.+                 
T Consensus       132 lwGSiGf~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ll~~~-~l~lp~~~~~~~~~~~~~-----------------  193 (400)
T PF03825_consen  132 LWGSIGFIVAALAFGGLLGGYLGISGTSLIFYIAAILSLLLAGF-ALFLPKTPPKRSAKESVK-----------------  193 (400)
T ss_pred             hhhhHHHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHHHHH-HHhCCCCccccccCCCcc-----------------
Confidence            6666776666443 233332222   224455554433222222 222333221110000000                 


Q ss_pred             CCCCCcchhcccccCCCCCccchhhhhhhhhhhhhhccccCCcccccchhhHHHHHHHHhHHHHHHHHHHHHHHhhcccc
Q 008231          274 PDHPSLLNEYQNAKVPHTEKFKCLDKAAIIEDNAVANENKNNSWIVSTVTEVEEVKMVLKLLPIWATCILFWTVYSQMTT  353 (573)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  353 (573)
                                         +....+                 .+     ...++++....++..++........+. +..
T Consensus       194 -------------------~~~~~~-----------------~~-----~llk~~~~~~Fll~~~l~~~~~~~~~~-f~~  231 (400)
T PF03825_consen  194 -------------------KLLGLD-----------------AL-----KLLKNPRFLVFLLAAFLIGISHAAYYT-FFS  231 (400)
T ss_pred             -------------------cccchH-----------------HH-----HHhcCccHHHHHHHHHHHHHHHHHHHH-HHH
Confidence                               000000                 00     011111122222222222222212211 111


Q ss_pred             hhhhhhhccccccccceecccccchhhHHHHHHHHHhhhhhhhhhhcccccccCCCchHHHHHHHHHHHHHHHHHHHHHH
Q 008231          354 FTVEQATFMNRKIGSFTVPSGSLSAFLFITILLFTSLNEKVFVPLARKITHSIQGMTSLQRVGTGLIFSVIAMIVSAVIE  433 (573)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~i~~i~~~~~~  433 (573)
                      .+..+.....      ....+.+.++..+.-++.....+++    .+|.       +..+.+..+.+..++-..+++...
T Consensus       232 ~yl~~~gg~~------~~~~g~~~~l~~~aEi~~f~~~~~~----~~r~-------g~~~ll~~a~~~~~vR~~l~a~~~  294 (400)
T PF03825_consen  232 IYLQELGGYS------GSTIGILWALGVVAEIPFFFFSGRF----LKRF-------GIKWLLLLALVAYAVRWLLYAYFS  294 (400)
T ss_pred             HHHHHcccch------hhHHHHHHHHHHHHHHHHHHHHHHH----HHhc-------CHHHHHHHHHHHHHHHHHHHHHhc
Confidence            1111110000      0011222334444444444444554    4543       344558888888888888777651


Q ss_pred             HHHHhhcccCCccc-chhHHHHHHHHHHHHHHhhhhhhhheeecccCchhHHHHHHHHHHH-HHHHHHHHHHHHHHHhhh
Q 008231          434 QQRRETSVQKHIQI-SAFWLVPQYFLVGAGEAFVYVGQLEFFIREGPERMKSMSTGLFLSA-ISMGMFVSSMLVSIVDKI  511 (573)
Q Consensus       434 ~~~~~~~~~~~~~~-~~~~lv~~~~l~g~~~~~~~~~~~~~~~~~~p~~~rg~~~gi~~~~-~~lg~~ig~~~~~~i~~~  511 (573)
                                ++.. .+....+...++|+..++.......|+.+.+|++.|++++++++.. .++|+.+|..+.|++.|.
T Consensus       295 ----------~~~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~  364 (400)
T PF03825_consen  295 ----------DPWPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDA  364 (400)
T ss_pred             ----------CCcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence                      1111 1112233346799999999999999999999999999999998854 789999999999999875


Q ss_pred             hccCccccccccchhhHHHHHHHHHHHHHHHHHHHHHh
Q 008231          512 TNKHWLRSNLNKGKLNNFYWLLAVLGLLNFMVFLFFAM  549 (573)
Q Consensus       512 ~~~~w~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~  549 (573)
                      .+.+.      .......+.+.+++.++..++++++.|
T Consensus       365 ~g~~~------~~~~~~~~~v~a~~~~~~~~~f~~~fk  396 (400)
T PF03825_consen  365 FGARG------MFDWSAVFLVFAVMALVILVLFVILFK  396 (400)
T ss_pred             hcchh------hhhHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            43111      011223455556666666666665544

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.76  E-value=1.8e-17  Score=164.76  Aligned_cols=150  Identities=15%  Similarity=0.059  Sum_probs=136.2

Q ss_pred             hhcCCCchhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCcccccccccc
Q 008231           62 GDLHLSSAKSATIVTNFMGTLNLLGLLGGFLADAKLGRYLTVAIFASVTALVVGLLTSATSIPSMRPPQCDDYRRKHHQC  141 (573)
Q Consensus        62 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (573)
                      .+++-++++.|++.+.+.+.+.+..++.|.+.||+ |+|-.+++|+.++...++++++..                    
T Consensus        99 ~~~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~i-Gy~ipm~~Gl~vmf~sTilFafg~--------------------  157 (464)
T KOG3764|consen   99 ISLDRENTQIGLLFASKALVQLLVNPFFGNLIDRI-GYKIPMVAGLFVMFLSTILFAFGN--------------------  157 (464)
T ss_pred             cCccccccchhHHHHHHHHHHHHhcccchhhHHHh-ccccHHHHHHHHHHHHHHHHHHcc--------------------
Confidence            35667788999999999999999999999999998 999999999999999999999975                    


Q ss_pred             ccchhhHHHHHHHHHHHHHhcCccccccccccccCCCCCCCchHHHhHHHHHHHHHHHHHhhhHHHHHHhhhhhcccchh
Q 008231          142 IEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKAMIFFFNRFYFAISIGSLFAVIVLVYVQDNVGRG  221 (573)
Q Consensus       142 ~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~~~~~l~~~~g~~  221 (573)
                            ++++++++|.++|+|.++...+..++++|.+|++++     |++++|+.-....+|-.+||.++|.+.+..|.+
T Consensus       158 ------sy~~l~vAR~LQgvgsA~~~tsglamlAd~f~~d~e-----r~~vmGialgfislG~lvgPpfGGilYe~~Gk~  226 (464)
T KOG3764|consen  158 ------SYPMLFVARSLQGVGSAFADTSGLAMLADVFPEDNE-----RGSVMGIALGFISLGVLVGPPFGGILYEFAGKS  226 (464)
T ss_pred             ------hhHHHHHHHHHhhhhHHHHHhhhHHHHHHHcccchh-----hhHHHHHHHHHHhccceecCCcccchHhhcCCc
Confidence                  456999999999999999999999999999998763     899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCc
Q 008231          222 WGYGISAGTMVVAAAILLIGTP  243 (573)
Q Consensus       222 ~~f~~~~~~~~~~~~~~~~~~~  243 (573)
                      .+|.+.++.+++...+-++..+
T Consensus       227 aPFlVL~~v~Lld~~L~l~vi~  248 (464)
T KOG3764|consen  227 APFLVLAIVLLLDGALQLLVIE  248 (464)
T ss_pred             CcHHHHHHHHHHHHHHHHheeC
Confidence            9999998888877665555444

>TIGR00805 oat sodium-independent organic anion transporter

Probab=99.76  E-value=1.2e-16  Score=177.11  Aligned_cols=206  Identities=13%  Similarity=0.119  Sum_probs=152.7

Q ss_pred             CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHH
Q 008231           29 TGGWLAAGLILGTELSERICAMGISMNLVTYLVGDLHLSSAKSATIVTNFMGTLNLLGLLGGFLADAKLGRYLTVAIFAS  108 (573)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~  108 (573)
                      ..+++.+.+.+....+....+.++.+...+.++++++++.++.|++.+.+.+++.++.++.|+++||+ |||+.+.++.+
T Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~-~r~~~i~~g~l  106 (633)
T TIGR00805        28 FSKIKVFSLLLTCAQLQGLLYNGLVNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKL-HRPIVIGIGCA  106 (633)
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhccc-CcceEEEecHH
Confidence            34455444444444555555567777788889999999999999999999999999999999999998 99999999999


Q ss_pred             HHHHHHHHHHhhccCC----------------CCCCCCCcccccc-------ccccccch--hhHHHHHHHHHHHHHhcC
Q 008231          109 VTALVVGLLTSATSIP----------------SMRPPQCDDYRRK-------HHQCIEAN--GKQLAMLYAALYTIALGG  163 (573)
Q Consensus       109 ~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~-------~~~~~~~~--~~~~~~~~~~~~l~g~g~  163 (573)
                      +++++.+++++...+.                ......|.+....       +..|....  ...+..++++|+++|+|.
T Consensus       107 l~~lg~ll~alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~  186 (633)
T TIGR00805       107 IMGLGSFLLSLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGA  186 (633)
T ss_pred             HHHHHHHHHhChHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccC
Confidence            9999999988753110                0001123211000       00111111  113567889999999999


Q ss_pred             ccccccccccccCCCCCCCchHHHhHHHHHHHHHHHHHhhhHHHHHHhhhhhccc----------------------chh
Q 008231          164 GGIKSNVSGFGSDQFDTSDPKEEKAMIFFFNRFYFAISIGSLFAVIVLVYVQDNV----------------------GRG  221 (573)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~~~~~l~~~~----------------------g~~  221 (573)
                      +...+...+++.|++|+++      |+..+++++.+..+|..+|+++++++.+.+                      +|+
T Consensus       187 ~~~~~~~~~~i~d~~~~~~------~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWw  260 (633)
T TIGR00805       187 TPIFPLGISYIDDFAKSKN------SPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWW  260 (633)
T ss_pred             CcchhcCchhhhccCCccc------cHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHH
Confidence            9999999999999999998      999999999999999999999999887532                      266


Q ss_pred             HHHHHHHHHHHHHHHHHHhc
Q 008231          222 WGYGISAGTMVVAAAILLIG  241 (573)
Q Consensus       222 ~~f~~~~~~~~~~~~~~~~~  241 (573)
                      ..|++.+++.++..+.+++.
T Consensus       261 l~Fli~g~l~~l~~v~l~~~  280 (633)
T TIGR00805       261 IGFLICGGVALLTSIPFFFF  280 (633)
T ss_pred             HHHHHHHHHHHHHHHHHHhC
Confidence            67777766655544444433

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=99.76  E-value=1.8e-16  Score=163.44  Aligned_cols=391  Identities=11%  Similarity=0.016  Sum_probs=223.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHH
Q 008231           33 LAAGLILGTELSERICAMGISMNLVTYLVGDLHLSSAKSATIVTNFMGTLNLLGLLGGFLADAKLGRYLTVAIFASVTAL  112 (573)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~  112 (573)
                      +..|......+.-.+.+-...++.+.++++..|+|.+|.|.+.++..+...+.+|+.|.++||. |.||-++....+..+
T Consensus         7 ~~~~~~s~~~f~~Ff~~gi~~pF~~iWL~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dkl-g~kK~Ll~~i~~l~~   85 (412)
T PF01306_consen    7 KNYWWLSLFYFFYFFIWGIFLPFFPIWLTQVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDKL-GLKKHLLWFIAILLL   85 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHHC-TTCSHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchh-hhhHHHHHHHHHHHH
Confidence            4566666666776777777889999999999999999999999999999999999999999998 866655544332221


Q ss_pred             --HH-HHHHhhccCCCCCCCCCccccccccccccchhhHHHHHHHHHHHHHhcCccccccccccccCCCCCCCchHHHhH
Q 008231          113 --VV-GLLTSATSIPSMRPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKAM  189 (573)
Q Consensus       113 --~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~r  189 (573)
                        +- ....+..-                         --.-++++.++.++..+.......... |..-++.+   .+.
T Consensus        86 l~~pff~~v~~pl-------------------------l~~n~~lg~iig~i~l~~~f~~~~~~~-Ea~~er~s---r~~  136 (412)
T PF01306_consen   86 LFGPFFIYVFGPL-------------------------LQSNFWLGAIIGGIYLGLVFNAGVPLS-EAYAERVS---RRN  136 (412)
T ss_dssp             TCHHHHHHTHHHH-------------------------HHTT-HHHHHHTTTTTTTTTTTHHHHH-HHHHHHHH---HHH
T ss_pred             HHHHHHHHHHHHH-------------------------HHHHHHHHHHHHHHHHHHHHcccchHH-HHHHHHHH---HHh
Confidence              22 22122100                         001123333344444444433333322 32222111   114


Q ss_pred             HHHHHHHHHHHHhhhHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHHHHhcCccccccCCCCCchhHHHHHHHHHHhcc
Q 008231          190 IFFFNRFYFAISIGSLFAVIVLVYVQDNVGRGWGYGISAGTMVVAAAILLIGTPWYRFKKPRGSPLTVIWRVLLLAWKKR  269 (573)
Q Consensus       190 ~~~~~~~~~~~~ig~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (573)
                      +.=+|-.+..+++|.+++..++|.+.+ .+.+..||+.....++..++....+++..++.+..+.               
T Consensus       137 ~feYG~~R~wGSig~ai~s~~~G~L~~-i~p~~~fwi~s~~~~il~lll~~~~~~~~~~~~~~~~---------------  200 (412)
T PF01306_consen  137 GFEYGRARMWGSIGFAIASLLAGILFN-INPNIIFWIASAAAIILLLLLLLLKPDVPPQAEVADA---------------  200 (412)
T ss_dssp             SS-HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHSS---SSSSS-SSTT---------------
T ss_pred             cCCcchHHHHhhHHHHHHHHHhheeee-eCccHHHHHHHHHHHHHHHHHHHcCCcCchhhhhhcc---------------
Confidence            455677888899999999999999986 5667788876665544444444443322111110000               


Q ss_pred             CCCCCCCCCcchhcccccCCCCCccchhhhhhhhhhhhhhccccCCcccccchhhHHHHHHHHhHHHHHHHHH-HHHHHh
Q 008231          270 SHPYPDHPSLLNEYQNAKVPHTEKFKCLDKAAIIEDNAVANENKNNSWIVSTVTEVEEVKMVLKLLPIWATCI-LFWTVY  348 (573)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~  348 (573)
                                       ...+.+..                     ..+  ....+.+.|+............ .+....
T Consensus       201 -----------------~~~~~~~~---------------------~~~--~~~~l~k~~~fw~~~l~v~g~~~~Y~vfd  240 (412)
T PF01306_consen  201 -----------------LGAKKDKV---------------------SLK--DVLSLFKMRNFWFFVLFVIGVAAIYDVFD  240 (412)
T ss_dssp             -----------------SSS---------------------------HH--HHHHHTTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -----------------cccCCCCC---------------------cHH--HHHHHhcchhHHHHHHHHHHHHHHHHHHH
Confidence                             00000000                     000  0011112223333322333333 344444


Q ss_pred             hcccchhhhhhhccccccccceecccccchhhHHHHHHHHHhhhhhhhhhhcccccccCCCchHHHHHHHHHHHHHHHHH
Q 008231          349 SQMTTFTVEQATFMNRKIGSFTVPSGSLSAFLFITILLFTSLNEKVFVPLARKITHSIQGMTSLQRVGTGLIFSVIAMIV  428 (573)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~i~~i~  428 (573)
                      +|.+.++..........    ..-.+.+.++..+.-.+...+..+++.|++           .++.+.++..++.+-.+.
T Consensus       241 qqf~~y~~~~f~~~~~g----~~~~G~l~s~~v~~E~~~m~~~p~li~rig-----------~k~~Lllag~i~~iRi~~  305 (412)
T PF01306_consen  241 QQFPIYFASFFQSAGQG----NQMYGYLWSVQVFLEALMMFFSPWLINRIG-----------AKNLLLLAGVIMAIRIIG  305 (412)
T ss_dssp             HHHHHHHHHTSSSHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcccccC----hhHHhHHHHHHHHHHHHHHHHHHHHHHhcC-----------hHhHHHHHHHHHHHHHHH
Confidence            55444443321111000    001222333334444444455555543333           334467777777788777


Q ss_pred             HHHHHHHHHhhcccCCcccchhHHHHHHHHHHHHHHhhhhhhhheeecccCchhHHHHHHHH-HHHHHHHHHHHHHHHHH
Q 008231          429 SAVIEQQRRETSVQKHIQISAFWLVPQYFLVGAGEAFVYVGQLEFFIREGPERMKSMSTGLF-LSAISMGMFVSSMLVSI  507 (573)
Q Consensus       429 ~~~~~~~~~~~~~~~~~~~~~~~lv~~~~l~g~~~~~~~~~~~~~~~~~~p~~~rg~~~gi~-~~~~~lg~~ig~~~~~~  507 (573)
                      .++.+              +.+++++.-.++++-..+......-|+.+.+|+|..++...+. ++..++|.++.+.+.|.
T Consensus       306 ~~~~~--------------~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~  371 (412)
T PF01306_consen  306 SGFAT--------------NPWVISLIKLLHALEFPLLLVAAFKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGY  371 (412)
T ss_dssp             HHT----------------SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred             Hhhhc--------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHh
Confidence            76652              5667788889999999999999999999999999999999986 58899999999999999


Q ss_pred             HhhhhccCccccccccchhhHHHHHHHHHHHHHHHHHHHHHhh
Q 008231          508 VDKITNKHWLRSNLNKGKLNNFYWLLAVLGLLNFMVFLFFAMK  550 (573)
Q Consensus       508 i~~~~~~~w~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~  550 (573)
                      +.|..+            +...|++++.+.++..++..+..++
T Consensus       372 lyd~~G------------~~~tylimg~iv~~~~li~~f~l~~  402 (412)
T PF01306_consen  372 LYDRIG------------FQHTYLIMGLIVLPFTLISAFTLKK  402 (412)
T ss_dssp             HHHHHH------------HHHHHHHHHHHHHHHHHHHHHHS--
T ss_pred             hHhhcC------------cHHHHHHHHHHHHHHHHHheeeecC
Confidence            987532            3457888888777777766666544

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=99.76  E-value=1.6e-15  Score=152.07  Aligned_cols=151  Identities=16%  Similarity=0.124  Sum_probs=126.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHH
Q 008231           36 GLILGTELSERICAMGISMNLVTYLVGDLHLSSAKSATIVTNFMGTLNLLGLLGGFLADAKLGRYLTVAIFASVTALVVG  115 (573)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~  115 (573)
                      .+++..-|+.+.......-.+.+.+++.++++..|++.+...+..++.+++++.|++.+|+ |+|+.++.|+.++++|+.
T Consensus        15 ~v~~t~lFfl~G~~~~l~diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~-gyk~gi~lgL~l~avg~~   93 (422)
T COG0738          15 FVLLTSLFFLWGFITCLNDILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKL-GYKAGIVLGLLLYAVGAA   93 (422)
T ss_pred             HHHHHHHHHHHHHHhhcchhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHh-hhHHHHHHHHHHHHHHHH
Confidence            3333333433333445566778889999999999999999999999999999999999998 999999999999999998


Q ss_pred             HHHhhccCCCCCCCCCccccccccccccchhhHHHHHHHHHHHHHhcCccccccccccccCCCCCCCchHHHhHHHHHHH
Q 008231          116 LLTSATSIPSMRPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKAMIFFFNR  195 (573)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  195 (573)
                      +..=+++.                       .++..++++.++.|.|.+.......++++.+.|+++      -.+-+++
T Consensus        94 lF~pAa~~-----------------------~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~------a~~rlnl  144 (422)
T COG0738          94 LFWPAASS-----------------------KSYGFFLVALFILASGIGLLETAANPYVTLLGKPES------AAFRLNL  144 (422)
T ss_pred             HHhhhhhh-----------------------hhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchh------HHHHHHH
Confidence            88644321                       477899999999999999999999999999999876      5566777


Q ss_pred             HHHHHHhhhHHHHHHhhhhhc
Q 008231          196 FYFAISIGSLFAVIVLVYVQD  216 (573)
Q Consensus       196 ~~~~~~ig~~~~~~~~~~l~~  216 (573)
                      .+....+|+.+||++++++..
T Consensus       145 ~q~fn~lGa~~gp~~g~~lil  165 (422)
T COG0738         145 AQAFNGLGAILGPLLGSSLIL  165 (422)
T ss_pred             HHHhhhhHHHHHHHHHHHHHH
Confidence            778889999999999998876

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=99.76  E-value=4.3e-22  Score=213.47  Aligned_cols=394  Identities=16%  Similarity=0.073  Sum_probs=218.9

Q ss_pred             hhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCccccccccccccchhhHH
Q 008231           70 KSATIVTNFMGTLNLLGLLGGFLADAKLGRYLTVAIFASVTALVVGLLTSATSIPSMRPPQCDDYRRKHHQCIEANGKQL  149 (573)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (573)
                      +.++..+...++..++.+++|+++||+ |||+++.++..+..++.++.++++..                       .+.
T Consensus        47 ~~~~~~~~~~~g~~~G~~~~g~~~d~~-GRk~~~~~~~~~~~i~~~~~~~~~~~-----------------------~~~  102 (451)
T PF00083_consen   47 LSSLLTSSFFIGAIVGALIFGFLADRY-GRKPALIISALLMIIGSILIAFAPSY-----------------------NNF  102 (451)
T ss_pred             HHHHHHHHHHhhhcccccccccccccc-cccccccccccccccccccccccccc-----------------------ccc
Confidence            467889999999999999999999999 99999999999999999999987411                       156


Q ss_pred             HHHHHHHHHHHhcCccccccccccccCCCCCCCchHHHhHHHHHHHHHHHHHhhhHHHHHHhhhhhcc---cchhHHHHH
Q 008231          150 AMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKAMIFFFNRFYFAISIGSLFAVIVLVYVQDN---VGRGWGYGI  226 (573)
Q Consensus       150 ~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~~~~~l~~~---~g~~~~f~~  226 (573)
                      +.+.++|++.|++.|+..+....++.|..|++.      |++..++.+....+|..++..+.-.+...   .+||..+.+
T Consensus       103 ~~~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~~------R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~  176 (451)
T PF00083_consen  103 WMLLIGRFLIGFGIGGAYVVSPIYISEIAPPKH------RGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILLIF  176 (451)
T ss_pred             ccccccccccccccccccccccccccccccccc------ccccccccccccccccccccccccccccccccccccccccc
Confidence            789999999999999999999999999999998      99999999999999998887776544332   359998887


Q ss_pred             HHHHHHHHHHHHHhcCccccccCCCCCchhHHHHHHHHHHhccCCCCCCCCCcchhcccccCCCCCccchhhhhhhhhhh
Q 008231          227 SAGTMVVAAAILLIGTPWYRFKKPRGSPLTVIWRVLLLAWKKRSHPYPDHPSLLNEYQNAKVPHTEKFKCLDKAAIIEDN  306 (573)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (573)
                      ..+..++..+.. ...||.++---.+.+.++..+.+.. .++.    +...++..+..++....                
T Consensus       177 ~~~~~l~~~~~~-~~~pESP~wL~~~~~~~~A~~~l~~-~~~~----~~~~~~~~~~~~~~~~~----------------  234 (451)
T PF00083_consen  177 GAIPSLLVLLLR-FFLPESPRWLLSKGRDEEAEKVLRK-LRGK----EIEDEEIEEIKAEKKES----------------  234 (451)
T ss_pred             cccccccccccc-cccccccceeccccccccccccccc-cccc----ccccccccccccccccc----------------
Confidence            776554433332 2333322110000000000000000 0000    00000000000000000                


Q ss_pred             hhhccccCCcccccchhhHHHHHHHHhHHHHHHHH-HHHHHHhhcccchhhhhhhccccccccceeccc-ccchhhHHHH
Q 008231          307 AVANENKNNSWIVSTVTEVEEVKMVLKLLPIWATC-ILFWTVYSQMTTFTVEQATFMNRKIGSFTVPSG-SLSAFLFITI  384 (573)
Q Consensus       307 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  384 (573)
                          ++....|+....... .+++.+..+.+.... ...+.....+.+.+... .         +.... .......+..
T Consensus       235 ----~~~~~~~~~l~~~~~-~~~~~~~~~~l~~~~~~~g~~~~~~~~~~i~~~-~---------~~~~~~~~~~~~~~~~  299 (451)
T PF00083_consen  235 ----QESKASWRDLFRNKK-YRKRLLIALLLQFFQQFSGINFIFYYSPSIFEN-A---------GISNSFLATLILGLVN  299 (451)
T ss_pred             ----cccceeeeecccccc-ccccccccccccccccccccccccccccccccc-c---------cccccccccccccccc
Confidence                000011211111110 111222211111111 00000011111111110 0         11111 1111111222


Q ss_pred             HHHHHhhhhhhhhhhcccccccCCCchHHHHHHHHHHHHHHHHHHH-HHHHHHHhhcccCCcc--cchhHHHHHHHHHHH
Q 008231          385 LLFTSLNEKVFVPLARKITHSIQGMTSLQRVGTGLIFSVIAMIVSA-VIEQQRRETSVQKHIQ--ISAFWLVPQYFLVGA  461 (573)
Q Consensus       385 l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~i~~i~~~-~~~~~~~~~~~~~~~~--~~~~~lv~~~~l~g~  461 (573)
                      ++...+...+.++++||..           +..+.+++.++.+.++ .....       ...+  .....++........
T Consensus       300 ~~~~~~~~~~~~~~GRr~~-----------~i~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~i~~~~l~~~~  361 (451)
T PF00083_consen  300 FLGTLLAIFLIDRFGRRKL-----------LIIGLLLMAICSLILGIIFFLG-------VSSSSWWSILSIVFLALFFAF  361 (451)
T ss_pred             ccccccccccccccccccc-----------cccccccccccccccccccccc-------cccccccccccceeeeecccc
Confidence            2222333355555566532           4555666555555553 11000       0110  122222222222222


Q ss_pred             HHHhhhhhhhheeecccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCccccccccchhhHHHHHHHHHHHHHH
Q 008231          462 GEAFVYVGQLEFFIREGPERMKSMSTGLFLSAISMGMFVSSMLVSIVDKITNKHWLRSNLNKGKLNNFYWLLAVLGLLNF  541 (573)
Q Consensus       462 ~~~~~~~~~~~~~~~~~p~~~rg~~~gi~~~~~~lg~~ig~~~~~~i~~~~~~~w~~~~~~~~~~~~~~~~~a~~~~l~~  541 (573)
                      ......+..+.+..|.+|.+.|+++.|+......+++++++.+.+.+.+..+            ....+++.++++++..
T Consensus       362 ~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~------------~~~~~~i~~~~~~i~~  429 (451)
T PF00083_consen  362 FSLGWGPLPWIYTAELFPTKVRSTGIGLSYAVGRIGGFIIPFLFPYLFNNLG------------GWGVFLIFAGVCLIAI  429 (451)
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccc------------ccccchhhHHHHHHHH
Confidence            2224457777899999999999999999999999999999888777654211            1245677788888888


Q ss_pred             HHHHHHHhhcchhhhcccc
Q 008231          542 MVFLFFAMKHQYNVQHRVK  560 (573)
Q Consensus       542 ~~~~~~~~~~~~~~~~~~~  560 (573)
                      ++.+++.||+|+++.+|.+
T Consensus       430 i~~~~~lpET~g~~l~ei~  448 (451)
T PF00083_consen  430 IFVYFFLPETKGKTLEEIQ  448 (451)
T ss_pred             hheeEEEeeCCCCCHHHHH
Confidence            8888889999988766554

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.75  E-value=2.9e-15  Score=157.55  Aligned_cols=176  Identities=13%  Similarity=-0.038  Sum_probs=119.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhhHH--HHHHHHHHHHHHhHH-HHHhhhccchhHHHHHHHHHH-H
Q 008231           36 GLILGTELSERICAMGISMNLVTYLVGDLHLSSAKSATI--VTNFMGTLNLLGLLG-GFLADAKLGRYLTVAIFASVT-A  111 (573)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~--~~~~~~~~~~~~~~~-G~laDr~~Grr~~~~~~~~~~-~  111 (573)
                      ..+...-+.+.+.+....+.+|.|++ +.|.|..+.|..  .+.......+.+|+. ++.+||+ ||||.+++...+. +
T Consensus         4 ~~~~~ly~~~g~~~~~~~p~lp~~l~-~~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~-g~r~~~i~~~~~~~~   81 (390)
T TIGR02718         4 ITLGLLYLSQGIPIGLAMDALPTLLR-EDGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRL-GRRRSWVLPMQCLVS   81 (390)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccC-CcchhHHHHHHHHHH
Confidence            44555556777777677788888887 569999999997  456677777777777 5579998 9999976665332 2


Q ss_pred             HHHHHHHhhccCCCCCCCCCccccccccccccchhhHHHHHHHHHHHHHhcCccccccccccccCCCCCCCchHHHhHHH
Q 008231          112 LVVGLLTSATSIPSMRPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKAMIF  191 (573)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~  191 (573)
                      +....++...  +.                    ......++....+.++..+...+...++..|..++++      ++.
T Consensus        82 ~~~~~~~~~~--~~--------------------~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~------~~~  133 (390)
T TIGR02718        82 ACLASLALVG--PD--------------------VAGAGWAVGLLACASLASATQDIATDGMAAEHFNGRT------LAK  133 (390)
T ss_pred             HHHHHHHcCC--cc--------------------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhh------hhH
Confidence            2222222110  10                    0112223334444556666666777777777776666      788


Q ss_pred             HHHHHHHHHHhhhHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHHHHhc
Q 008231          192 FFNRFYFAISIGSLFAVIVLVYVQDNVGRGWGYGISAGTMVVAAAILLIG  241 (573)
Q Consensus       192 ~~~~~~~~~~ig~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~  241 (573)
                      ..+....+..+|..+|+.+.+++.+.+|||.+|++.++..++..+..++.
T Consensus       134 ~~~~~~~g~~lG~~~g~~~~~~l~~~~gw~~~f~~~a~l~~~~~~~~~~~  183 (390)
T TIGR02718       134 GNAVQIAGVMIGFFGGGAGTLVLFGKFGQRPAFLLVACVPLASLVCVLWL  183 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHc
Confidence            88888888899999999999999999999999998887766555544443

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=99.75  E-value=4e-16  Score=167.46  Aligned_cols=418  Identities=15%  Similarity=0.101  Sum_probs=251.9

Q ss_pred             HHHHHHHHHHHHHHHHHHH---HHHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHH
Q 008231           36 GLILGTELSERICAMGISM---NLVTYLVGDLHLSSAKSATIVTNFMGTLNLLGLLGGFLADAKLGRYLTVAIFASVTAL  112 (573)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~---~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~  112 (573)
                      |+..++.|+.++..+++..   .+-..+.++++.+..+.+|+.++......+..|+.+.+.||+ |.|.+.++|.++.++
T Consensus        45 WvV~~a~fl~~~~~~g~~~~~Gv~~~~~~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rf-g~R~v~i~G~~v~~~  123 (509)
T KOG2504|consen   45 WVVVFASFLVNLSTDGLINSFGLLFEELMDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRF-GCRTVMIAGGLVAAL  123 (509)
T ss_pred             eeeeHhHHHHHHhhhcchheehhhHHHHHHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhhc-CchHHHHHHHHHHHH
Confidence            6666666666666555543   344567789999999999999999999999999999999999 999999999999999


Q ss_pred             HHHHHHhhccCCCCCCCCCccccccccccccchhhHHHHHHHHH-HHHHhcCccccccccccccCCCCCCCchHHHhHHH
Q 008231          113 VVGLLTSATSIPSMRPPQCDDYRRKHHQCIEANGKQLAMLYAAL-YTIALGGGGIKSNVSGFGSDQFDTSDPKEEKAMIF  191 (573)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~  191 (573)
                      |.++.++++                          +++.+++.- ++.|+|.++........+..+|+++       |+.
T Consensus       124 g~~lssF~~--------------------------~i~~l~lt~gvi~G~G~~~~~~paiviv~~YF~kk-------R~l  170 (509)
T KOG2504|consen  124 GLLLSSFAT--------------------------SLWQLYLTFGVIGGLGLGLIYLPAVVILGTYFEKK-------RAL  170 (509)
T ss_pred             HHHHHHHHh--------------------------hHHHHHHHHHHHhhccchhhhcchhhhhhhHhHHH-------HHH
Confidence            999999985                          566666654 5689999999999889999887754       999


Q ss_pred             HHHHHHHHHHhhhHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHHHHhcCccccccCCCCCchhHHHHHHHHHHhccCC
Q 008231          192 FFNRFYFAISIGSLFAVIVLVYVQDNVGRGWGYGISAGTMVVAAAILLIGTPWYRFKKPRGSPLTVIWRVLLLAWKKRSH  271 (573)
Q Consensus       192 ~~~~~~~~~~ig~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (573)
                      +.|+...+..+|.++-|.+..++.+.+|||+.+++.....+-..+.....+|.....++..+  .+        .+....
T Consensus       171 A~Gia~~GsG~G~~~~~~l~~~l~~~~G~r~~~l~~~~~~l~~~~~~~~~rp~~~~~~~~~~--~~--------~~~~~~  240 (509)
T KOG2504|consen  171 ATGIAVSGTGVGTVVFPPLLKYLLSKYGWRGALLIFGGISLNVLVAGALLRPLSPPKKPNEE--KD--------LRNSAA  240 (509)
T ss_pred             HHhhhhccCCcceeeHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCCCCcCCCchhh--hh--------hccccc
Confidence            99999999999999999999999999999999987777665555555555553332222200  00        000000


Q ss_pred             CCCCCCCcchhcccccCCCCCccchhhhhhhhhhhhhhccccCCccc-----c-cc---hhhHHHHHHHHhHHHHHHHHH
Q 008231          272 PYPDHPSLLNEYQNAKVPHTEKFKCLDKAAIIEDNAVANENKNNSWI-----V-ST---VTEVEEVKMVLKLLPIWATCI  342 (573)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~-~~---~~~~~~~~~~l~~~~~~~~~~  342 (573)
                      ..+........   ...+...  ...+ .........  ++....++     . +.   ....+++..+...+...+...
T Consensus       241 ~~~~~~~~~~~---~~~~~~~--~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~~~d~~ll~~~~fl~~~~~~~~~~~  312 (509)
T KOG2504|consen  241 SVESTPKPVEL---RISERDS--GLKK-LSLSNLATL--KRGPDKWRNSPLQAFLSMLDLSLLKDPKFLLLALSNLFAYL  312 (509)
T ss_pred             ccccccccccc---ccccCCC--CCCc-ccccchhhh--hhCCccccccchhhhhhhhhHHHHcCchHHHHHHHHHHHHH
Confidence            00000000000   0000000  0000 000000000  00000010     0 00   111111111111111111111


Q ss_pred             HHHHHhhcccchhhhhhhccccccccceecccccchhhHHHHHHHHHhhhhhhhhhhcccccccCCCchHHHHHHHHHHH
Q 008231          343 LFWTVYSQMTTFTVEQATFMNRKIGSFTVPSGSLSAFLFITILLFTSLNEKVFVPLARKITHSIQGMTSLQRVGTGLIFS  422 (573)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~  422 (573)
                      .++..+.    ++....   . ..+........+.++..+..+++-++.+++.|+..         ........++++..
T Consensus       313 g~~~p~~----~l~~~~---~-~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~---------~~~~~~~~~~ll~~  375 (509)
T KOG2504|consen  313 GFNVPFV----YLPSYA---K-SLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPG---------IRALVLFLLTLLIA  375 (509)
T ss_pred             HHHHHHH----HHHHHH---h-hcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCccc---------cchHHHHHHHHHHH
Confidence            1111111    111111   1 11111123344455555556666666666654432         12233356666666


Q ss_pred             HHHHHHHHHHHHHHHhhcccCCcccchhHHHHHHHHHHHHHHhhhhhhhheeecccCchhHHHHHHHHHHHHHHHHHHHH
Q 008231          423 VIAMIVSAVIEQQRRETSVQKHIQISAFWLVPQYFLVGAGEAFVYVGQLEFFIREGPERMKSMSTGLFLSAISMGMFVSS  502 (573)
Q Consensus       423 ~i~~i~~~~~~~~~~~~~~~~~~~~~~~~lv~~~~l~g~~~~~~~~~~~~~~~~~~p~~~rg~~~gi~~~~~~lg~~ig~  502 (573)
                      +++.+.....              ...+.++...+++|++.+.........+.+..+.+.-..+.|+..++..++..+|+
T Consensus       376 gl~~~~~p~~--------------~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gp  441 (509)
T KOG2504|consen  376 GLARLFLPFA--------------TTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGP  441 (509)
T ss_pred             HHHHHHHHHh--------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCc
Confidence            6666544443              24566777788889888888877777888999999999999999999999999999


Q ss_pred             HHHHHHhhhhccCccccccccchhhHHHHHHHHHHHHHHHHHHHH
Q 008231          503 MLVSIVDKITNKHWLRSNLNKGKLNNFYWLLAVLGLLNFMVFLFF  547 (573)
Q Consensus       503 ~~~~~i~~~~~~~w~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~  547 (573)
                      .+.|++.+.++           ++...|...+...++++...++.
T Consensus       442 Piag~~~d~tg-----------~Y~~~f~~~g~~~~~s~~~~~~~  475 (509)
T KOG2504|consen  442 PIAGLLYDITG-----------NYDHAFYFCGLCFLLSAVLLLIL  475 (509)
T ss_pred             ccceeeeeccC-----------CeeeehhhcChHHHHHHHHHHHh
Confidence            99997776542           23445555565555555444333

>TIGR00788 fbt folate/biopterin transporter

Probab=99.74  E-value=1.7e-15  Score=162.86  Aligned_cols=380  Identities=13%  Similarity=0.106  Sum_probs=215.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhHHHHHhhhccc-----hhHHHHHHHH
Q 008231           34 AAGLILGTELSERICAMGISMNLVTYLVGDLHLSSAKSATIVTNFMGTLNLLGLLGGFLADAKLG-----RYLTVAIFAS  108 (573)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~G-----rr~~~~~~~~  108 (573)
                      ...++...-+.+.+. +.+...+++++.+++|+|.++.+...+...+...+-++ +|+++||+ +     ||+.++++.+
T Consensus        27 ~~~~~~~~y~~qGl~-~l~~~~~~~~l~~~lg~s~~~i~~~~sl~~lpw~~K~l-~g~l~D~~-~i~G~rRr~~l~~~~~  103 (468)
T TIGR00788        27 VLAIGLQVLFVKGIA-GLMRLPLSPMLTDDLGLDGARYQRLVGLSSLGWALKPF-AGVMSDTF-PLFGYTKRWYLVLSGL  103 (468)
T ss_pred             HHHHHHHHHHHhhHH-HHhhhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHhc-CCCCccchHHHHHHHH
Confidence            444555566777777 77777888999999999999999999999988888655 99999998 7     7777777766


Q ss_pred             HHH-HHHHHHHhhccCCCCCCCCCccccccccccccchhhHHHHHHHHHHHHHhcCccccccccccccCCCCCCCchHHH
Q 008231          109 VTA-LVVGLLTSATSIPSMRPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEK  187 (573)
Q Consensus       109 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~~~~~  187 (573)
                      +.. ++...++...                         .......+.+++.+++.+.......++..|..+ ++++   
T Consensus       104 l~~~~~~~~l~~~~-------------------------~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~---  154 (468)
T TIGR00788       104 LGSAILYGLLPGKV-------------------------SSAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESPS---  154 (468)
T ss_pred             HHHHHHHHhccccc-------------------------chHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCC---
Confidence            552 3222222111                         123333446788999999999999999999998 4321   


Q ss_pred             hHHHHHHHHHHHHHhhhHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHHHHhcCccccc-cCCCCCchhHHHHHHHHHH
Q 008231          188 AMIFFFNRFYFAISIGSLFAVIVLVYVQDNVGRGWGYGISAGTMVVAAAILLIGTPWYRF-KKPRGSPLTVIWRVLLLAW  266 (573)
Q Consensus       188 ~r~~~~~~~~~~~~ig~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  266 (573)
                      .++...+..+...++|..+|+.++|++.+.+||+..|++.++..++..+...+ .+|.+. ..++.....          
T Consensus       155 ~~~~~~s~~~~~~~~G~~vg~~l~G~l~~~~~~~~~f~~~a~l~ll~~~~~~~-~~E~~~~~~~~~~~~~----------  223 (468)
T TIGR00788       155 AGPSLVSWMWGASATGGLISSLLGGPLLDKTLTRILFLITAALLLLQLFVSNL-SKERRAFVRPRIGTYL----------  223 (468)
T ss_pred             cCCCeeeHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHh-cccccccccccccccc----------
Confidence            13445556666678999999999999999999999999887766665333333 233210 011000000          


Q ss_pred             hccCCCCCCCCCcchhcccccCCCCCccchhhhhhhhhhhhhhccccCCcccccchhhHHHHHHHHhHHHHHHHHHH-HH
Q 008231          267 KKRSHPYPDHPSLLNEYQNAKVPHTEKFKCLDKAAIIEDNAVANENKNNSWIVSTVTEVEEVKMVLKLLPIWATCIL-FW  345 (573)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~  345 (573)
                                  ..+.      .. ......+..+.             .++  ........+.+...+   ++... +.
T Consensus       224 ------------~~~~------~~-~~~~~~~~~~~-------------~~~--~l~~~l~~~~i~~~l---~fifl~~~  266 (468)
T TIGR00788       224 ------------EMNM------AL-LTLGVLANVKV-------------QIL--GLRGAIQLLEIAKPL---IFIFLSYA  266 (468)
T ss_pred             ------------hhhh------hh-hhhhHHHHHHH-------------HHH--HHHHHHhcHHHHHHH---HHHHHHHh
Confidence                        0000      00 00000000000             000  000000111111111   11111 11


Q ss_pred             HHhhcccchhhhhhhccccccccceecccccchhhHHHHHHHHHhhhhhhhhhhcccccccCCCchHHHHHHHHHHHHHH
Q 008231          346 TVYSQMTTFTVEQATFMNRKIGSFTVPSGSLSAFLFITILLFTSLNEKVFVPLARKITHSIQGMTSLQRVGTGLIFSVIA  425 (573)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~i~  425 (573)
                      .........+....    ..++......+.+.....++.++...+.+++.    +|.       +..+.+..+.++.+++
T Consensus       267 ~~~~~~~~~f~~~~----~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~----~~~-------~~r~~l~~~~~l~~~~  331 (468)
T TIGR00788       267 NLPGASGSVFCATT----QCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFL----KTF-------PYRLLFGVTTLLYTLS  331 (468)
T ss_pred             hcCCCCceeEEEEc----ccCCCCcchhhhHHHHHHHHHHHHHHHHHHHH----hhC-------CHHHHHHHHHHHHHHH
Confidence            11111111111111    11111122233444445555556666655553    332       3334466666666665


Q ss_pred             HHHHHHHHHHHHhhcccCCcccchhHHHHHHHHHHHHHHhhhhhhhheeecccCchhHHHHHHHHHHHHHHHHHHHHHHH
Q 008231          426 MIVSAVIEQQRRETSVQKHIQISAFWLVPQYFLVGAGEAFVYVGQLEFFIREGPERMKSMSTGLFLSAISMGMFVSSMLV  505 (573)
Q Consensus       426 ~i~~~~~~~~~~~~~~~~~~~~~~~~lv~~~~l~g~~~~~~~~~~~~~~~~~~p~~~rg~~~gi~~~~~~lg~~ig~~~~  505 (573)
                      .+........ .+.   .......+++....++.+++.++...+...++.+..|++.+|+..|+.++..++|..+++.++
T Consensus       332 ~~~~~~l~~~-~~~---~~gi~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~g  407 (468)
T TIGR00788       332 SLFDLILVKR-WNL---AFGISDEVFVLGDSIIAEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLG  407 (468)
T ss_pred             HhCceeeeec-ccc---ccCCCCeeeeeehhHHHHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHH
Confidence            5433211000 000   000012233444567778888888888899999999999999999999999999999999998


Q ss_pred             HHHhhhh
Q 008231          506 SIVDKIT  512 (573)
Q Consensus       506 ~~i~~~~  512 (573)
                      +.+.+..
T Consensus       408 g~l~~~~  414 (468)
T TIGR00788       408 VLLMETI  414 (468)
T ss_pred             HHHHHHc
Confidence            8887643

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>PTZ00207 hypothetical protein; Provisional

Probab=99.73  E-value=1.4e-14  Score=156.93  Aligned_cols=175  Identities=13%  Similarity=-0.021  Sum_probs=130.8

Q ss_pred             CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHH
Q 008231           29 TGGWLAAGLILGTELSERICAMGISMNLVTYLVGDLHLSSAKSATIVTNFMGTLNLLGLLGGFLADAKLGRYLTVAIFAS  108 (573)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~  108 (573)
                      .++|..+...+....+.... |++ +.....+++++|+|..+.+++.++.. ...++.++.|+++||+ |+|+++.++.+
T Consensus        24 ~~Rw~~lva~~~~~~~~g~~-y~f-sv~s~~L~~~lgls~~~l~~i~svg~-~~g~~~lp~G~L~Dr~-G~R~vllig~l   99 (591)
T PTZ00207         24 PRRFALLVLGAFCSICTSFM-YAF-NLISGAMQARYNLTQRDLSTITTVGI-AVGYFLLPYSFIYDYL-GPRPIFVLSMT   99 (591)
T ss_pred             cchHHHHHHHHHHHHHHHHH-HHH-HHHHHHHHHHhCcCHHHHHHHHHHHH-HHHHHHHHHHHHHHHh-CcHHHHHHHHH
Confidence            45665555555555544433 344 35556789999999999999987743 4456777899999998 99999999999


Q ss_pred             HHHHHHHHHHhhccCCCCCCCCCccccccccccccchhhHHHHHHHHHHHHHhcCccccccccccccCCCCCCCchHHHh
Q 008231          109 VTALVVGLLTSATSIPSMRPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKA  188 (573)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (573)
                      ++.++.++++++.+-.                    ...+++.+++.|++.|+|.+...+.....+.++|| ++      
T Consensus       100 l~~iG~ll~ala~~~~--------------------i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~------  152 (591)
T PTZ00207        100 VFCLGTLLFALTFQEV--------------------IEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SN------  152 (591)
T ss_pred             HHHHHHHHHHHHhccc--------------------ccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hh------
Confidence            9999999999862100                    01367889999999999999888888888999997 45      


Q ss_pred             HHHHHHHHHHHHHhhhHH-HHHHhhhhhcccchhHHHHHHHHHHHHHHH
Q 008231          189 MIFFFNRFYFAISIGSLF-AVIVLVYVQDNVGRGWGYGISAGTMVVAAA  236 (573)
Q Consensus       189 r~~~~~~~~~~~~ig~~~-~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~  236 (573)
                      ||++.|+...+.++|+.+ +++..+++.  .+|++.|++.++..++..+
T Consensus       153 RG~a~Gi~~~~~gLGsaI~~~l~~~l~~--~~~~~~fl~l~vl~~vv~l  199 (591)
T PTZ00207        153 RGAVVAIMKTFTGLGSAILGSIQLAFFS--DNTSAYFFFLMSFALVVGI  199 (591)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhHHHHHHHHHHHHHHHHH
Confidence            999999999999999975 555555554  3577777766555444333

>PF13347 MFS_2: MFS/sugar transport protein

Probab=99.71  E-value=4.1e-15  Score=158.49  Aligned_cols=357  Identities=16%  Similarity=0.085  Sum_probs=226.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhHHHHHhh----hccchhHHH-HHHHHHHHHHHHH
Q 008231           42 ELSERICAMGISMNLVTYLVGDLHLSSAKSATIVTNFMGTLNLLGLLGGFLAD----AKLGRYLTV-AIFASVTALVVGL  116 (573)
Q Consensus        42 ~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laD----r~~Grr~~~-~~~~~~~~~~~~~  116 (573)
                      .+...+.++....+++.|+++.+|+++...|.+..+..+...+..|+.|+++|    |+ ||||.. +++..+.+++..+
T Consensus        10 ~~~~~~~~~~~~~~~~~f~~~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~-Grrrp~~l~g~i~~~~~~~l   88 (428)
T PF13347_consen   10 DLGYNMIWSLLSSYLLYFYTDVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRW-GRRRPWILIGAILLALSFFL   88 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccc-cccceEeehhhHHHHHHHHH
Confidence            34555555566778899999999999999999999999999999999999999    77 877654 4677777777766


Q ss_pred             HHhhccCCCCCCCCCccccccccccccchhhHHHHHHHHHHHHHhcCccccccccccccCCCCCCCchHHHhHHHHHHHH
Q 008231          117 LTSATSIPSMRPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKAMIFFFNRF  196 (573)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  196 (573)
                      +....  |.                ..........+++..++..++......+..++..|..++.++     |.+..+..
T Consensus        89 lf~~~--p~----------------~~~~~~~~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~-----R~~l~~~~  145 (428)
T PF13347_consen   89 LFSPP--PA----------------GLSFTAKLVWLFVFYILFDIAYTFVQIPYNALIPELTPDPDE-----RTRLSSWR  145 (428)
T ss_pred             hhccc--cc----------------hhhhhhHHHHHHHHHHHHHHhhhhccCchhhcCccccccHhh-----hhhHHHHH
Confidence            66431  10                000001233345666667888899988999999999986532     99999998


Q ss_pred             HHHHHhhhHHHHHHhhhhhccc-------chhHHHHHHHHHHHHHHHHHHhcCccccccCCCCCchhHHHHHHHHHHhcc
Q 008231          197 YFAISIGSLFAVIVLVYVQDNV-------GRGWGYGISAGTMVVAAAILLIGTPWYRFKKPRGSPLTVIWRVLLLAWKKR  269 (573)
Q Consensus       197 ~~~~~ig~~~~~~~~~~l~~~~-------g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (573)
                      .....+|..+...+.+.+.+..       +|++...+.++..++..++..+..+|.+.+.++.++               
T Consensus       146 ~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v~~iv~~v~~~i~~~~~ke~~~~~~~~~~---------------  210 (428)
T PF13347_consen  146 MIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMALVLAIVGLVFFLITFFFVKERSVEVTEQEK---------------  210 (428)
T ss_pred             HHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHHHHHHHHHHHHhhhhhheeeecccccccccc---------------
Confidence            8888888876666666554322       578777777666665555545544441111100000               


Q ss_pred             CCCCCCCCCcchhcccccCCCCCccchhhhhhhhhhhhhhccccCCcccccchhhHHHHHHHHhHHHHHHHHHHHHHHhh
Q 008231          270 SHPYPDHPSLLNEYQNAKVPHTEKFKCLDKAAIIEDNAVANENKNNSWIVSTVTEVEEVKMVLKLLPIWATCILFWTVYS  349 (573)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  349 (573)
                                             ..+..+                 .+     ....+.|.....+.........+....
T Consensus       211 -----------------------~~~~~~-----------------~~-----~~~~~nr~~~~l~~~~~~~~~~~~~~~  245 (428)
T PF13347_consen  211 -----------------------KISLRD-----------------SL-----RSLFRNRPFRILLLAFFLQWLAFALMN  245 (428)
T ss_pred             -----------------------cccccc-----------------ch-----hhhcccchHHHHHHHHHHHHhhhhhhh
Confidence                                   000000                 00     000111111111111111111111111


Q ss_pred             cccchhhhhhhccccccccceecccccchhhHHHHHHHHHhhhhhhhhhhcccccccCCCchHHHHHHHHHHHHHHHHHH
Q 008231          350 QMTTFTVEQATFMNRKIGSFTVPSGSLSAFLFITILLFTSLNEKVFVPLARKITHSIQGMTSLQRVGTGLIFSVIAMIVS  429 (573)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~i~~i~~  429 (573)
                      ....++.....+.+       -..+.+..+..+..++..++..++.+|+.+|+.           +..+.++.+++.+++
T Consensus       246 ~~~~y~~~~vl~~~-------~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~-----------~~~~~~~~~~~~~~~  307 (428)
T PF13347_consen  246 TFLPYYFTYVLGNE-------GLISIFMLIFFVASIVGSPLWGRLSKRFGKKKV-----------YIIGLLLAALGFLLL  307 (428)
T ss_pred             hHHHHHHHHHhcCc-------hhhHHHHHHHHHHHHHHHHHHHHHHHHccceee-----------hhhhHHHHHHHHHHH
Confidence            11122222211111       112334445566677778888888766655532           677777777777776


Q ss_pred             HHHHHHHHhhcccCCcccchhHHHHHHHHHHHHHHhhhhhhhheeecccC-------chhHHHHHHHHHHHHHHHHHHHH
Q 008231          430 AVIEQQRRETSVQKHIQISAFWLVPQYFLVGAGEAFVYVGQLEFFIREGP-------ERMKSMSTGLFLSAISMGMFVSS  502 (573)
Q Consensus       430 ~~~~~~~~~~~~~~~~~~~~~~lv~~~~l~g~~~~~~~~~~~~~~~~~~p-------~~~rg~~~gi~~~~~~lg~~ig~  502 (573)
                      .+...            .+.+++.+..++.|++.+..++..+++..|..+       ++..|...|++++...++..+++
T Consensus       308 ~~~~~------------~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~  375 (428)
T PF13347_consen  308 FFLGP------------GSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAG  375 (428)
T ss_pred             HHHHh------------hhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHH
Confidence            66521            356677888899999999999999999999886       35579999999999999999999


Q ss_pred             HHHHHHhhhh
Q 008231          503 MLVSIVDKIT  512 (573)
Q Consensus       503 ~~~~~i~~~~  512 (573)
                      .+.+.+.+..
T Consensus       376 ~i~g~~l~~~  385 (428)
T PF13347_consen  376 AIVGLLLALV  385 (428)
T ss_pred             HHHHHHHHHh
Confidence            9999887654

>PRK11462 putative transporter; Provisional

Probab=99.68  E-value=9.3e-14  Score=149.15  Aligned_cols=174  Identities=10%  Similarity=0.068  Sum_probs=121.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhHHHHHhhhc---cchhHHHH-HHHHHHHH
Q 008231           37 LILGTELSERICAMGISMNLVTYLVGDLHLSSAKSATIVTNFMGTLNLLGLLGGFLADAK---LGRYLTVA-IFASVTAL  112 (573)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~---~Grr~~~~-~~~~~~~~  112 (573)
                      .-.++.+..++.+..+..+++.|+++.+|+++..+|.+..+.-+.-.+.-|+.|+++||.   +||||..+ ++....++
T Consensus        13 ~Yg~g~~~~~~~~~~~~~~l~~fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i   92 (460)
T PRK11462         13 GYGMGDAASHIIFDNVMLYMMFFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGI   92 (460)
T ss_pred             hhccchhhhhHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHH
Confidence            334556666677777778899999999999999999999999999999999999999972   38876655 56566777


Q ss_pred             HHHHHHhhccCCCCCCCCCccccccccccccchhhHHHHHHHHHHHHHhcCccccccccccccCCCCCCCchHHHhHHHH
Q 008231          113 VVGLLTSATSIPSMRPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKAMIFF  192 (573)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~  192 (573)
                      +.+++......+                   .. .....+++.-.+..++......+..++.+|+.++.++     |.+.
T Consensus        93 ~~~llf~~p~~s-------------------~~-~~~~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~e-----Rt~l  147 (460)
T PRK11462         93 VCVLAYSTPDLS-------------------MN-GKMIYAAITYTLLTLLYTVVNIPYCALGGVITNDPTQ-----RISL  147 (460)
T ss_pred             HHHHHHhCCCCC-------------------cc-hHHHHHHHHHHHHHHHHHHHhccHHHHHHHhcCCHHH-----HHHH
Confidence            766655432100                   00 1223344444456777788888888999998875432     9999


Q ss_pred             HHHHHHHHHhhhHHHHHHhhhhhccc-------chhHHHHHHHHHHHHHH
Q 008231          193 FNRFYFAISIGSLFAVIVLVYVQDNV-------GRGWGYGISAGTMVVAA  235 (573)
Q Consensus       193 ~~~~~~~~~ig~~~~~~~~~~l~~~~-------g~~~~f~~~~~~~~~~~  235 (573)
                      .++...+.++|..+++.+...+.+..       ||+....+.++..++..
T Consensus       148 ~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~~ii~~i~~  197 (460)
T PRK11462        148 QSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAVLSVVAFMML  197 (460)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHH
Confidence            99999999999888877765544332       45555444444333333

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=99.64  E-value=6.2e-13  Score=138.64  Aligned_cols=366  Identities=12%  Similarity=0.065  Sum_probs=226.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhHHHHHhhhc---cchhHH-HHHHHHHH
Q 008231           35 AGLILGTELSERICAMGISMNLVTYLVGDLHLSSAKSATIVTNFMGTLNLLGLLGGFLADAK---LGRYLT-VAIFASVT  110 (573)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~---~Grr~~-~~~~~~~~  110 (573)
                      -.--..+.+..+..+-.+..++..|+++..|+|...+|.+..+.=+.=++.-|+.|.+.||.   +||+|- ++++.+.+
T Consensus        14 ki~Yg~gd~~~~~~~~~~~~yLl~fYTdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~   93 (467)
T COG2211          14 KIGYGLGDFASNFAFGIVVLYLLFFYTDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPF   93 (467)
T ss_pred             HHhhcchhhHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHH
Confidence            34445566667777777888999999999999999999999999999999999999999983   366555 55666778


Q ss_pred             HHHHHHHHhhccCCCCCCCCCccccccccccccchhhHHHHHHHHHHHHHhcCccccccccccccCCCCCCCchHHHhHH
Q 008231          111 ALVVGLLTSATSIPSMRPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKAMI  190 (573)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~  190 (573)
                      ++.+.++..+.... +.                   ......++.-.+.+++......+..++.+++.++.++     |.
T Consensus        94 ~i~~~l~F~~p~~~-~~-------------------~k~~ya~vtY~l~~l~YT~vniPy~al~~~iT~d~~E-----R~  148 (467)
T COG2211          94 AIVAVLLFITPDFS-MT-------------------GKLIYALVTYMLLGLGYTLVNIPYGALGPEITQDPQE-----RA  148 (467)
T ss_pred             HHHHHHHHcCCCcc-cC-------------------cchHHHHHHHHHHHHHHHheeCchhhcchhhcCCHHH-----HH
Confidence            88877777653211 11                   2333445556678899999999999999999876542     99


Q ss_pred             HHHHHHHHHHHhhhHHHHHHhhhhhc-------ccchhHHHHHHHHHHHHHHHHHHhcCccccccCCCCCchhHHHHHHH
Q 008231          191 FFFNRFYFAISIGSLFAVIVLVYVQD-------NVGRGWGYGISAGTMVVAAAILLIGTPWYRFKKPRGSPLTVIWRVLL  263 (573)
Q Consensus       191 ~~~~~~~~~~~ig~~~~~~~~~~l~~-------~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (573)
                      +..++-....++|..+...+.+.+..       ..||+..-.+..+...+..++.++..+|...+..+.++         
T Consensus       149 ~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~~~~~g~~~~~~~~~vi~~i~~l~~~~~v~ER~~~~~~~~~---------  219 (467)
T COG2211         149 SLTSWRMVFASLGGLLVAVLFPPLVKLFGGGDKALGYQGTALVLGVIGVILLLFCFFNVKERVVETQPTKT---------  219 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcccCccccCcc---------
Confidence            99999888889997777666655543       23566555544444444444444433332211110000         


Q ss_pred             HHHhccCCCCCCCCCcchhcccccCCCCCccchhhhhhhhhhhhhhccccCCcccccchhhHHHHHHHHhHHHHHHHHHH
Q 008231          264 LAWKKRSHPYPDHPSLLNEYQNAKVPHTEKFKCLDKAAIIEDNAVANENKNNSWIVSTVTEVEEVKMVLKLLPIWATCIL  343 (573)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  343 (573)
                                                 +...+..+...                      ...+.|..+..+...++...
T Consensus       220 ---------------------------~~~~~~~~~~~----------------------~~~~Nrp~~~~l~~~l~~~~  250 (467)
T COG2211         220 ---------------------------GVKLKLKDSFL----------------------LIFKNRPLLLLLLMNLLLFI  250 (467)
T ss_pred             ---------------------------cccccHHHHHH----------------------HHHccchHHHHHHHHHHHHH
Confidence                                       00001100000                      01112222222222233322


Q ss_pred             HHHHhhcccchhhhhhhccccccccceecccccchhhHHHHHHHHHhhhhhhhhhhcccccccCCCchHHHHHHHHHHHH
Q 008231          344 FWTVYSQMTTFTVEQATFMNRKIGSFTVPSGSLSAFLFITILLFTSLNEKVFVPLARKITHSIQGMTSLQRVGTGLIFSV  423 (573)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~  423 (573)
                      ..........++....  ++..    .............+.++..++..++..++++|           +.+..+.++..
T Consensus       251 ~~~i~~s~~~yy~~y~--lg~~----~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk-----------~~~~~~~~~~~  313 (467)
T COG2211         251 AFNIRGSIMVYYVTYV--LGDP----ELFAYLLLLASGAGLLIGLILWPRLVKKFGKK-----------KLFLIGLLLLA  313 (467)
T ss_pred             HHHHHhhhhheeEEEE--cCCh----HHHHHHHHHHHHHHHHHHHHhHHHHHHHhchH-----------HHHHHHHHHHH
Confidence            2222222222232221  1111    21222223333334444455555554444433           33677788888


Q ss_pred             HHHHHHHHHHHHHHhhcccCCcccchhHHHHHHHHHHHHHHhhhhhhhheeecccC-------chhHHHHHHHHHHHHHH
Q 008231          424 IAMIVSAVIEQQRRETSVQKHIQISAFWLVPQYFLVGAGEAFVYVGQLEFFIREGP-------ERMKSMSTGLFLSAISM  496 (573)
Q Consensus       424 i~~i~~~~~~~~~~~~~~~~~~~~~~~~lv~~~~l~g~~~~~~~~~~~~~~~~~~p-------~~~rg~~~gi~~~~~~l  496 (573)
                      ++.+.+.+..            ..+.++++...++.+++.+..++..++++.|...       .|..|...|.+.++.-+
T Consensus       314 i~~~~~~f~~------------~~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~  381 (467)
T COG2211         314 VGYLLLYFTP------------AGSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKL  381 (467)
T ss_pred             HHHHHHHhhc------------CcchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHH
Confidence            8877776652            2345566667788899999999999999998764       46789999999999999


Q ss_pred             HHHHHHHHHHHHhhhh
Q 008231          497 GMFVSSMLVSIVDKIT  512 (573)
Q Consensus       497 g~~ig~~~~~~i~~~~  512 (573)
                      |.+++..+.|++....
T Consensus       382 g~ala~~~~g~~L~~~  397 (467)
T COG2211         382 GLALAGFIPGWILGAI  397 (467)
T ss_pred             HHHHHHHHHHHHHHHc
Confidence            9999999999988653

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=99.62  E-value=9.2e-16  Score=145.53  Aligned_cols=356  Identities=13%  Similarity=0.171  Sum_probs=217.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHH
Q 008231           35 AGLILGTELSERICAMGISMNLVTYLVGDLHLSSAKSATIVTNFMGTLNLLGLLGGFLADAKLGRYLTVAIFASVTALVV  114 (573)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~  114 (573)
                      +...++..|...++| --..-+..+.+.+.+++.++..++.++|+....+.+.++|++.||..|-|..-++-+.+..+|-
T Consensus        46 lv~mc~lgfgsyfcy-d~p~alq~~fk~d~ni~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~fv~~Gq  124 (459)
T KOG4686|consen   46 LVFMCLLGFGSYFCY-DAPGALQIDFKLDSNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIFVFLGQ  124 (459)
T ss_pred             HHHHHHhcccceeec-CCchhhhhhhhcccccceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHHHHHHH
Confidence            333333333333333 2334466788888999999999999999999999999999999997798877666666667777


Q ss_pred             HHHHhhccCCCCCCCCCccccccccccccchhhHHHHHHHHHHHHHhcCccccccccccccCCCCCCCchHHHhHHHHHH
Q 008231          115 GLLTSATSIPSMRPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKAMIFFFN  194 (573)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  194 (573)
                      ++.+.-.                       +-+.++++..+|++.|+|.-.......++..-+|+.+|      .+.++|
T Consensus       125 liFa~Gg-----------------------i~~aFw~M~~GRF~FGIGgESlAVaQN~yav~wFKGKE------Ln~vfG  175 (459)
T KOG4686|consen  125 LIFAAGG-----------------------ISHAFWTMLAGRFLFGIGGESLAVAQNKYAVYWFKGKE------LNFVFG  175 (459)
T ss_pred             HHHHhch-----------------------HHHHHHHHHhhheeeccCchhhhhhhcceeEEEecCcc------ccchhh
Confidence            6666421                       11578899999999999998888899999999999999      999999


Q ss_pred             HHHHHHHhhhHHHHHHhhhhhcccchhH------HHHH----HHHHHHHHHHHHHhcCccccccCCCCCchhHHHHHHHH
Q 008231          195 RFYFAISIGSLFAVIVLVYVQDNVGRGW------GYGI----SAGTMVVAAAILLIGTPWYRFKKPRGSPLTVIWRVLLL  264 (573)
Q Consensus       195 ~~~~~~~ig~~~~~~~~~~l~~~~g~~~------~f~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (573)
                      ++.....+|+..-..+.+++.+..+--.      ...+    ....+...++.... .-..      ++...       .
T Consensus       176 lqlSvAR~GstvNf~lm~~ly~~~~~~~~~~ghT~LG~~l~~~~~tc~~slical~-lg~~------D~rAe-------r  241 (459)
T KOG4686|consen  176 LQLSVARLGSTVNFLLMPFLYDTMGRMFPGVGHTLLGLWLCFEVKTCKQSLICALS-LGLS------DDRAE-------R  241 (459)
T ss_pred             HHHHHHHhhceeeeeecHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHH-hhhh------hhHHH-------H
Confidence            9999999999988888888887654211      1110    01111111110000 0000      00000       0


Q ss_pred             HHhccCCCCCCCCCcchhcccccCCCCCccchhhhhhhhhhhhhhccccCCcccccchhhHHHHHHHHhHHHHHHHHHHH
Q 008231          265 AWKKRSHPYPDHPSLLNEYQNAKVPHTEKFKCLDKAAIIEDNAVANENKNNSWIVSTVTEVEEVKMVLKLLPIWATCILF  344 (573)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  344 (573)
                      .++..+.+..+.|+                                      .     +.+.+.+.-  ...+...+..+
T Consensus       242 ilh~e~g~~Ge~pk--------------------------------------L-----tdv~~f~pp--fw~~~iicv~y  276 (459)
T KOG4686|consen  242 ILHLEEGFLGEEPK--------------------------------------L-----TDVNTFYPP--FWVLVIICVLY  276 (459)
T ss_pred             HHhhhcCcccCCcc--------------------------------------c-----ccccccCcc--HHHHHHHHHHH
Confidence            00000000000000                                      0     000000000  00112222333


Q ss_pred             HHHhhcccc----hhhhhhhccccccccceecccccchhhHHHHHHHHHhhhhhhhhhhcccccccCCCchHHHHHHHHH
Q 008231          345 WTVYSQMTT----FTVEQATFMNRKIGSFTVPSGSLSAFLFITILLFTSLNEKVFVPLARKITHSIQGMTSLQRVGTGLI  420 (573)
Q Consensus       345 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~  420 (573)
                      +.....+.+    ++.... .++      ...++.+.+.--....+..|+++.+.|+.+++...          +..+.+
T Consensus       277 yva~fPFi~lg~~fF~~rf-GlS------~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~w----------v~~a~~  339 (459)
T KOG4686|consen  277 YVAWFPFITLGPMFFQKRF-GLS------AVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWW----------VASACI  339 (459)
T ss_pred             HHHHHHHhhhhHHHHHHhh-CCC------hhhccchhhhhhhhhhhhhhhHHHhHhhhcceehh----------HHHHHH
Confidence            332222211    222211 111      22333344444455567788889998888777543          444544


Q ss_pred             HHHHHHHHHHHHHHHHHhhcccCCcccchhHHHHHHHHHHHHHHhhhhhhhheeecccCchhHHHHHHHHHHHHHHHHHH
Q 008231          421 FSVIAMIVSAVIEQQRRETSVQKHIQISAFWLVPQYFLVGAGEAFVYVGQLEFFIREGPERMKSMSTGLFLSAISMGMFV  500 (573)
Q Consensus       421 ~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~lv~~~~l~g~~~~~~~~~~~~~~~~~~p~~~rg~~~gi~~~~~~lg~~i  500 (573)
                      ....+-..+.+.                .+-....+.+.|+...+.....|..+..++|++..|++.|...+.+++|-.+
T Consensus       340 ~tl~~H~~l~Ft----------------~lsPy~~m~~lGLsysllAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~  403 (459)
T KOG4686|consen  340 LTLLGHSGLFFT----------------FLSPYTSMTFLGLSYSLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAF  403 (459)
T ss_pred             HHHHHhhhHHhh----------------hccHHHHHHHHhhhHHHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhH
Confidence            444444433332                2222345677788888877888999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhh
Q 008231          501 SSMLVSIVDKIT  512 (573)
Q Consensus       501 g~~~~~~i~~~~  512 (573)
                      .+.+++.+.+..
T Consensus       404 i~Iiag~i~d~~  415 (459)
T KOG4686|consen  404 IPIIAGFIADGD  415 (459)
T ss_pred             HhhhhheeecCC
Confidence            999999987643

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=99.55  E-value=1.3e-11  Score=131.96  Aligned_cols=361  Identities=14%  Similarity=0.063  Sum_probs=189.5

Q ss_pred             hhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHH-HHHHHHHHHHHHhhccCCCCCCCCCccccccccccccchhhHH
Q 008231           71 SATIVTNFMGTLNLLGLLGGFLADAKLGRYLTVAIF-ASVTALVVGLLTSATSIPSMRPPQCDDYRRKHHQCIEANGKQL  149 (573)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (573)
                      .++..++..+...+..|+.|-++|+. |+||-++.. ..+..+.+.++.+..  |                      .+.
T Consensus        72 ~~~~~sis~l~~all~P~lGa~aD~~-~~Rk~~l~~~~~~~~~~~~~l~~v~--~----------------------~~~  126 (477)
T PF11700_consen   72 WLYANSISGLLQALLAPFLGAIADYG-GRRKRFLLIFTLLGVLATALLWFVS--P----------------------GQW  126 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHccc-ccchHHHHHHHHHHHHHHHHHHHhC--c----------------------chH
Confidence            35667888889999999999999997 666655544 455556666666642  1                      233


Q ss_pred             HHHHHHHHHHHhcCccccccccccccCCCCCCCch--------------------HHHhHHHHHHHHHHHHHhhhHHHHH
Q 008231          150 AMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPK--------------------EEKAMIFFFNRFYFAISIGSLFAVI  209 (573)
Q Consensus       150 ~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~r~~~~~~~~~~~~ig~~~~~~  209 (573)
                      +...+...+.-++.+.......+++.|..++++..                    +...|++..+.-....++|+++.-+
T Consensus       127 ~~~~~l~iia~v~~~~~~vfyna~LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~  206 (477)
T PF11700_consen  127 WLALVLFIIANVGYEASNVFYNAYLPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALL  206 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHH
Confidence            33333334444556666677788888988877620                    0001277777777778888887766


Q ss_pred             Hhhhhhcc--------cchhHHHHHHHHHHHHHHHHHHhcCccccc--cCCCC-CchhHHHHHHHHHHhccCCCCCCCCC
Q 008231          210 VLVYVQDN--------VGRGWGYGISAGTMVVAAAILLIGTPWYRF--KKPRG-SPLTVIWRVLLLAWKKRSHPYPDHPS  278 (573)
Q Consensus       210 ~~~~l~~~--------~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (573)
                      +.-.+...        .+.|.++.+.++..++..+-+++..|+.+.  ..+.. +......+.+...+|+          
T Consensus       207 i~l~~~~~~~~~~~~~~~~r~~~~~~a~ww~vfsiP~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~t~k~----------  276 (477)
T PF11700_consen  207 ISLLLVISPGSTASNTWAIRVAFLIVALWWLVFSIPLFLWLPDRPGPRPLPSGSSYLRFGFKRLWRTFKE----------  276 (477)
T ss_pred             HHHHHHHcCCCccccchhhhHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCcchhHHHHHHHHHHHHHHH----------
Confidence            65443221        234667777666655554444444443322  11111 1112222222222211          


Q ss_pred             cchhcccccCCCCCccchhhhhhhhhhhhhhccccCCcccccchhhHHHHHHHHhH-HHHHHHHHHHHHHhhcccchhhh
Q 008231          279 LLNEYQNAKVPHTEKFKCLDKAAIIEDNAVANENKNNSWIVSTVTEVEEVKMVLKL-LPIWATCILFWTVYSQMTTFTVE  357 (573)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~  357 (573)
                                                                    ..+.|.+... +..++..-..... ..+...+..
T Consensus       277 ----------------------------------------------~~~~~~~~~fLia~~l~~dg~~ti-~~~~~i~a~  309 (477)
T PF11700_consen  277 ----------------------------------------------IRKLRQLFLFLIAYFLYSDGVNTI-ISFAGIYAT  309 (477)
T ss_pred             ----------------------------------------------HHhChHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence                                                          1111111111 1111111111111 111111111


Q ss_pred             hhhccccccccceecccccchhhHHHHHHHHHhhhhhhhhhhcccccccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008231          358 QATFMNRKIGSFTVPSGSLSAFLFITILLFTSLNEKVFVPLARKITHSIQGMTSLQRVGTGLIFSVIAMIVSAVIEQQRR  437 (573)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~i~~i~~~~~~~~~~  437 (573)
                      ...+++..      ....+..+..+..+++..+.+++.    +|...     +..+.+..++++..+..+. +.......
T Consensus       310 ~~lg~s~~------~l~~~~l~~~i~a~~Ga~~~g~l~----~r~g~-----k~~~~l~~~l~~~~~i~~~-g~~G~~~~  373 (477)
T PF11700_consen  310 EVLGMSTT------QLIVFGLVVQIVAIIGALLFGWLQ----DRFGP-----KTKRTLLISLILWIIIPLY-GLFGFWPS  373 (477)
T ss_pred             HhcCcCHH------HHHHHHHHHHHHHHHHHHHHHHHH----HHhCC-----chhHHHHHHHHHHHHHHHH-HHHHhhhc
Confidence            11122211      111122233333444444555553    33321     2112234444333222221 11100000


Q ss_pred             hhcccCCcccchhHHHHHHHHHHHHHHhhhhhhhheeecccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCcc
Q 008231          438 ETSVQKHIQISAFWLVPQYFLVGAGEAFVYVGQLEFFIREGPERMKSMSTGLFLSAISMGMFVSSMLVSIVDKITNKHWL  517 (573)
Q Consensus       438 ~~~~~~~~~~~~~~lv~~~~l~g~~~~~~~~~~~~~~~~~~p~~~rg~~~gi~~~~~~lg~~ig~~~~~~i~~~~~~~w~  517 (573)
                           .....+-+.+.+..++.|+..+...+..-++..++.|++..+...|++.+......++||++.+.+.+.++    
T Consensus       374 -----~~g~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg----  444 (477)
T PF11700_consen  374 -----FFGLKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATG----  444 (477)
T ss_pred             -----ccCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC----
Confidence                 00011223344455778999999999999999999999999999999999999999999999999987653    


Q ss_pred             ccccccchhhHHHHHHHHHHHHHHHHHH
Q 008231          518 RSNLNKGKLNNFYWLLAVLGLLNFMVFL  545 (573)
Q Consensus       518 ~~~~~~~~~~~~~~~~a~~~~l~~~~~~  545 (573)
                             +....+..+.++.++++++++
T Consensus       445 -------~~r~g~~~l~~lf~~gl~ll~  465 (477)
T PF11700_consen  445 -------SQRYGFLFLLVLFLIGLILLF  465 (477)
T ss_pred             -------CchhHHHHHHHHHHHHHHHHh
Confidence                   233456666666666665553

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.49  E-value=6.9e-13  Score=143.87  Aligned_cols=178  Identities=12%  Similarity=0.086  Sum_probs=128.7

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHH
Q 008231           32 WLAAGLILGTELSERICAMGISMNLVTYLVGDLHLSSAKSATIVTNFMGTLNLLGLLGGFLADAKLGRYLTVAIFASVTA  111 (573)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~  111 (573)
                      ++.........++....+|++..++|.|+++.+|++..+.+.+.....++..++.+++|+++||+ |||+++.++.++..
T Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-grr~~~~~~~~~~~  327 (490)
T PRK10642        249 WRSLLTCIGLVIATNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRF-GRRPFVILGSVALF  327 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHH
Confidence            34444344444556678899999999999999999998888888888888999999999999998 99999888776544


Q ss_pred             HHHHH-HHhhccCCCCCCCCCccccccccccccchhhHHHHHHHHHHHHHhcCccccccccccccCCCCCCCchHHHhHH
Q 008231          112 LVVGL-LTSATSIPSMRPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKAMI  190 (573)
Q Consensus       112 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~  190 (573)
                      ++... .....+                        .+...+++++++.+++.+...+....++.|.+|++.      |+
T Consensus       328 ~~~~~~~~~~~~------------------------~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~p~~~------Rg  377 (490)
T PRK10642        328 VLAIPAFILINS------------------------NVIGLIFAGLLMLAVILNCFTGVMASTLPAMFPTHI------RY  377 (490)
T ss_pred             HHHHHHHHHHhC------------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcc------ch
Confidence            43332 221110                        134566778888887766666667788889999999      99


Q ss_pred             HHHHHHHHHHHhhhHHHHHHhhhhhcccc-hhHHHHHHHHHHHHHHHHHHh
Q 008231          191 FFFNRFYFAISIGSLFAVIVLVYVQDNVG-RGWGYGISAGTMVVAAAILLI  240 (573)
Q Consensus       191 ~~~~~~~~~~~ig~~~~~~~~~~l~~~~g-~~~~f~~~~~~~~~~~~~~~~  240 (573)
                      ++.++.+....+++.++|.+.+++.+..+ |+.++++..+..++..+..++
T Consensus       378 ~~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~~~~  428 (490)
T PRK10642        378 SALAAAFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLITGVT  428 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHH
Confidence            99998544456667889999999887654 676666555444444444333

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.47  E-value=1.8e-12  Score=136.59  Aligned_cols=171  Identities=13%  Similarity=0.023  Sum_probs=129.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHH
Q 008231           36 GLILGTELSERICAMGISMNLVTYLVGDLHLSSAKSATIVTNFMGTLNLLGLLGGFLADAKLGRYLTVAIFASVTALVVG  115 (573)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~  115 (573)
                      +..+...+.....++....++|.|+++++|++..+.+.+.+...+...++.+++|+++||+ |||+.+..+.....+...
T Consensus       219 ~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~-g~~~~~~~~~~~~~~~~~  297 (393)
T PRK15011        219 LLLFVICTLMWGTNSLYIINMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRL-GKRFLMRVAAVAGVCFYA  297 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHH
Confidence            3333333444445555667889999999999999999998888888888999999999998 999988777655554443


Q ss_pred             HHHhhccCCCCCCCCCccccccccccccchhhHHHHHHHHHHHHHhcCccccccccccccCCCCCCCchHHHhHHHHHHH
Q 008231          116 LLTSATSIPSMRPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKAMIFFFNR  195 (573)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  195 (573)
                      .+...                          .+...+++.+++.+++.+...+....+..|.+|+ +      |+++.++
T Consensus       298 ~~~~~--------------------------~~~~~~l~~~~l~~~~~g~~~~~~~~~~~~~~p~-~------~g~~~~~  344 (393)
T PRK15011        298 GMLMA--------------------------HSPAILLGLQLLNAIYIGILGGIGMLYFQDLMPG-Q------AGSATTL  344 (393)
T ss_pred             HHHHH--------------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-C------cchHHHH
Confidence            33332                          2445566677777776666656666777888774 4      8999999


Q ss_pred             HHHHHHhhhHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHHHHh
Q 008231          196 FYFAISIGSLFAVIVLVYVQDNVGRGWGYGISAGTMVVAAAILLI  240 (573)
Q Consensus       196 ~~~~~~ig~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~  240 (573)
                      ++...++|..++|.++|++.+.+||+.+|++..+..+++.+.++.
T Consensus       345 ~~~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~  389 (393)
T PRK15011        345 YTNTSRVGWIIAGSLAGIVAEIWNYHAVFWFALVMIIATLFCLLR  389 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh
Confidence            988899999999999999999899999998877776666655444

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.47  E-value=8.2e-13  Score=142.42  Aligned_cols=176  Identities=14%  Similarity=0.054  Sum_probs=133.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHH
Q 008231           33 LAAGLILGTELSERICAMGISMNLVTYLVGDLHLSSAKSATIVTNFMGTLNLLGLLGGFLADAKLGRYLTVAIFASVTAL  112 (573)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~  112 (573)
                      +.+|.+.+..++....+++...++|.|+++++|+|..++++..+.+.++..++.+++|+++||+ |||+.+.+...+..+
T Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~-g~r~~~~~~~~~~~~  336 (467)
T PRK09556        258 PVIWLLCFANIFLYIVRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLA-NGRRALVACIALALI  336 (467)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCchHHHHHHHHHH
Confidence            4678888888888888888889999999999999999999999999999999999999999998 999887665544444


Q ss_pred             HHHHHHhhccCCCCCCCCCccccccccccccchhhHHHHHHHHHHHHHhcCccccccccccccCCCCCCCchHHHhHHHH
Q 008231          113 VVGLLTSATSIPSMRPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKAMIFF  192 (573)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~  192 (573)
                      +..+..+..  .                      .+.....+.+++.|++.............|.+|++.      |+++
T Consensus       337 ~~~~~~~~~--~----------------------~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~~~------~g~a  386 (467)
T PRK09556        337 IFTLGVYQH--A----------------------TSEYMYLASLFALGFLVFGPQLLIGVAAVGFVPKKA------IGVA  386 (467)
T ss_pred             HHHHHHHHh--c----------------------CcHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcchhh------HHHH
Confidence            332222211  0                      133445566666775433322222356679999888      9999


Q ss_pred             HHHHHHHHHh-hhHHHHHHhhhhhc------------ccchhHHHHHHHHHHHHHHHHHH
Q 008231          193 FNRFYFAISI-GSLFAVIVLVYVQD------------NVGRGWGYGISAGTMVVAAAILL  239 (573)
Q Consensus       193 ~~~~~~~~~i-g~~~~~~~~~~l~~------------~~g~~~~f~~~~~~~~~~~~~~~  239 (573)
                      .|+.+...++ |..++|.+.|++.+            ..||+..|++..+..+++.+..+
T Consensus       387 ~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~  446 (467)
T PRK09556        387 NGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAALDIAAIGCICLMA  446 (467)
T ss_pred             HHHHHHHHHHHhHHHHhhhHHHHhcccccccccccccccChHHHHHHHHHHHHHHHHHHH
Confidence            9999999886 77999999999999            56899999887777766655444

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=99.47  E-value=9e-11  Score=119.36  Aligned_cols=347  Identities=13%  Similarity=0.106  Sum_probs=200.5

Q ss_pred             hhhcCCCchhhhHHHHHHHHHHHHHHhHHHHHhhhccc-----hhHH-HHHHHHHHHHHHHHHHhhccCCCCCCCCCccc
Q 008231           61 VGDLHLSSAKSATIVTNFMGTLNLLGLLGGFLADAKLG-----RYLT-VAIFASVTALVVGLLTSATSIPSMRPPQCDDY  134 (573)
Q Consensus        61 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~G-----rr~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (573)
                      ..+++++..-.+..++...+... ..+..|+.||+. +     ||-- ++.|..+.+.+..+..++.-.-...       
T Consensus         7 IvEL~vpA~lv~~lval~~~~ap-~R~~~G~~SD~~-~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~-------   77 (403)
T PF03209_consen    7 IVELGVPAWLVALLVALHYLVAP-LRVWFGHRSDTH-PSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAES-------   77 (403)
T ss_pred             HHHhccHHHHHHHHHHHHHHHHH-HHHHhccccccC-cccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHccc-------
Confidence            45788888888888888777655 588889999997 6     5544 4455666666666666543111000       


Q ss_pred             cccccccccchhhHHHHHHHHHHHHHhcCccccccccccccCCCCCCCchHHHhHHHHHHHHHHHHHhhhHHHHHHhhhh
Q 008231          135 RRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKAMIFFFNRFYFAISIGSLFAVIVLVYV  214 (573)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~~~~~l  214 (573)
                         ..+...+.........++-++.|+|.+....+..++++|..|+++      |+++.++.+.+.-+|.+++.++.+.+
T Consensus        78 ---~~~~~~~~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~------R~~~v~ivw~Mli~G~iv~ai~~g~l  148 (403)
T PF03209_consen   78 ---GQQSSGPFWLGLALAALAFLLYGLGVHASGTSFLALLADLAPEER------RPRVVAIVWVMLIVGIIVSAIVFGRL  148 (403)
T ss_pred             ---ccccccccHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhh------hhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence               000001111122234445566899999999999999999999998      99999999999999999999999988


Q ss_pred             hcccchhHHHH----HHHHHHHHHHHHHHhcCccccccCCCCCchhHHHHHHHHHHhccCCCCCCCCCcchhcccccCCC
Q 008231          215 QDNVGRGWGYG----ISAGTMVVAAAILLIGTPWYRFKKPRGSPLTVIWRVLLLAWKKRSHPYPDHPSLLNEYQNAKVPH  290 (573)
Q Consensus       215 ~~~~g~~~~f~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (573)
                      .+.++-.-..-    ...+..++..+..+-..++.++..+.                                     ..
T Consensus       149 L~~~s~~rL~~v~~~~a~i~~~l~~ia~wg~E~r~~~~~~~-------------------------------------~~  191 (403)
T PF03209_consen  149 LDPFSPERLIQVIQGVALIALLLNLIALWGQEPRRSRRAAA-------------------------------------AE  191 (403)
T ss_pred             ccccCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcccccC-------------------------------------CC
Confidence            88776332221    22222222232222222222111100                                     00


Q ss_pred             CCccchhhhhhhhhhhhhhccccCCcccccchhhHHHHHHHHhHHHHHHHHHHHHHHhhcccchhhhhhhccccccccce
Q 008231          291 TEKFKCLDKAAIIEDNAVANENKNNSWIVSTVTEVEEVKMVLKLLPIWATCILFWTVYSQMTTFTVEQATFMNRKIGSFT  370 (573)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  370 (573)
                      +++.++.+.....             |   .+   .+.++.+..  +++....+++-..-+.+ |-       .+.++..
T Consensus       192 ~~~~~f~~a~~~~-------------~---~~---~~a~~f~~f--l~l~t~a~~~QD~iLEP-yg-------g~Vfgms  242 (403)
T PF03209_consen  192 RPRPPFREAWRQV-------------W---AS---PQARRFFVF--LFLGTLAFFMQDVILEP-YG-------GEVFGMS  242 (403)
T ss_pred             CCCccHHHHHHHH-------------H---hC---CChhHHHHH--HHHHHHHHHhhHHHcCC-ch-------hHHcCCC
Confidence            0011111111000             0   00   001121111  22222222211111111 10       0111111


Q ss_pred             e-cccccchhhHHHHHHHHHhhhhhhhhhhcccccccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCcccch
Q 008231          371 V-PSGSLSAFLFITILLFTSLNEKVFVPLARKITHSIQGMTSLQRVGTGLIFSVIAMIVSAVIEQQRRETSVQKHIQISA  449 (573)
Q Consensus       371 ~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~  449 (573)
                      + ....++..-..+.++...+.+++..|   |.       ++.+....|.....+++........           ..+.
T Consensus       243 v~eTT~Lta~~~~G~L~G~~~~g~~l~~---~~-------~~~~~a~~G~~~~~~~f~lii~a~~-----------~~~~  301 (403)
T PF03209_consen  243 VGETTRLTAFWGGGTLLGMLLAGFLLSR---RL-------GKKRTAALGCLLGALAFALIILAGP-----------LGSP  301 (403)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcC---CC-------CchHHHHHHHHHHHHHHHHHHHHHh-----------cccc
Confidence            1 23345555556666666666666432   21       1122244555666666655554421           1235


Q ss_pred             hHHHHHHHHHHHHHHhhhhhhhheeecccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 008231          450 FWLVPQYFLVGAGEAFVYVGQLEFFIREGPERMKSMSTGLFLSAISMGMFVSSMLVSIVDKIT  512 (573)
Q Consensus       450 ~~lv~~~~l~g~~~~~~~~~~~~~~~~~~p~~~rg~~~gi~~~~~~lg~~ig~~~~~~i~~~~  512 (573)
                      +.+.+..++.|++.+.......+...+..+++..|..+|.+...+.++..++.++.+.+.|..
T Consensus       302 ~~~~~~~~l~G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~  364 (403)
T PF03209_consen  302 WLFRPGVFLLGLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLV  364 (403)
T ss_pred             hHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            567778899999999999999999999999999999999999999999999999999988765

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.47  E-value=2e-11  Score=124.39  Aligned_cols=382  Identities=10%  Similarity=0.001  Sum_probs=216.6

Q ss_pred             HHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCcccc
Q 008231           56 LVTYLVGDLHLSSAKSATIVTNFMGTLNLLGLLGGFLADAKLGRYLTVAIFASVTALVVGLLTSATSIPSMRPPQCDDYR  135 (573)
Q Consensus        56 l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (573)
                      +..|..+.+| |...+-|...+|++.+....+++-|+.|++ |-|...+++..+..+|..+=.++.. |...        
T Consensus        67 i~n~~~~~Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~-GLR~a~llgt~ln~iGa~Ir~iss~-p~v~--------  135 (480)
T KOG2563|consen   67 INNYVNSFYG-SSSAADWLSMIYMVVSVPFGFAAMWILDKF-GLRTALLLGTVLNGIGAWIRLISSL-PFVP--------  135 (480)
T ss_pred             HHHHHHHHhc-chHHHHHHHHHHHHHHHHHhhHHHHhhccc-chHHHHHHHHHHHHHHHHHhhhccC-cccc--------
Confidence            4456666777 777788999999999999999999999998 9999999999999999988877642 2111        


Q ss_pred             ccccccccchhhHHH--HHHHHHHHHHhcCccccccccccccCCCCCCCchHHHhHHHHHHHHHHHHHhhhHHHHHHhhh
Q 008231          136 RKHHQCIEANGKQLA--MLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKAMIFFFNRFYFAISIGSLFAVIVLVY  213 (573)
Q Consensus       136 ~~~~~~~~~~~~~~~--~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~~~~~  213 (573)
                                 +.++  ..+.+..+.+..+-++......+...||++++      |..+..+-.++..+|..+|.++...
T Consensus       136 -----------~~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~q------ra~A~~~~v~~n~LGvavg~llppi  198 (480)
T KOG2563|consen  136 -----------PLFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQ------RAIATVLGVMGNPLGVAVGFLLPPI  198 (480)
T ss_pred             -----------ccchhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcch------hhhhhhHHHhcchHHHHHHhhccce
Confidence                       2333  67788888888888887777778888999999      9999888777777777777666655


Q ss_pred             hhccc------chhH--HHHHHHHHHHHHHHHHHhcCccccccCCCCCchhHHHHHHHHHHhccCCCCCCCCCcchhccc
Q 008231          214 VQDNV------GRGW--GYGISAGTMVVAAAILLIGTPWYRFKKPRGSPLTVIWRVLLLAWKKRSHPYPDHPSLLNEYQN  285 (573)
Q Consensus       214 l~~~~------g~~~--~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  285 (573)
                      +..+-      .|..  .|....+...+.++...+.+++.++.||..+...                             
T Consensus       199 lV~~~~~~~~~~~~~~~~f~~~~~l~~l~l~l~~~~~~~~P~tPps~s~~~-----------------------------  249 (480)
T KOG2563|consen  199 LVPSSKDSEDNSWLFFTLFLGVECLAALLLALVLFVFTKKPPTPPSASQAA-----------------------------  249 (480)
T ss_pred             ecCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCchhHhh-----------------------------
Confidence            54332      3543  2332333333333333333333333332211100                             


Q ss_pred             ccCCCCCccchhhhhhhhhhhhhhccccCCcccccchhhHHHHHHHHhHHHHHHHHHHHHHHhhcccchhhhhhhccccc
Q 008231          286 AKVPHTEKFKCLDKAAIIEDNAVANENKNNSWIVSTVTEVEEVKMVLKLLPIWATCILFWTVYSQMTTFTVEQATFMNRK  365 (573)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  365 (573)
                           .++.++...                     -....+++..++..+.......+++..+..+...+       ..+
T Consensus       250 -----~~~~~f~~s---------------------i~~~~~n~~F~il~~~ygi~~g~F~~l~~~l~~~l-------~~s  296 (480)
T KOG2563|consen  250 -----LQDASFPKS---------------------IKSCFKNRQFIILAICYGIGLGLFNSLSTLLNLAL-------CPS  296 (480)
T ss_pred             -----hhcCcHHHH---------------------HHHHHcCccHHHHHHHHhhhHHHHHHHHHHhhhcc-------ccc
Confidence                 000000000                     00111122222222222222222333222222111       111


Q ss_pred             cccceecccccchhhHHHHHHHHHhhhhhhhhhhcccccccCCCchHHHHHHHHHHHHHH-HHHHHHHHHHHHhhcccCC
Q 008231          366 IGSFTVPSGSLSAFLFITILLFTSLNEKVFVPLARKITHSIQGMTSLQRVGTGLIFSVIA-MIVSAVIEQQRRETSVQKH  444 (573)
Q Consensus       366 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~i~-~i~~~~~~~~~~~~~~~~~  444 (573)
                       +-.+...+.......+..++.+...+.+.||. |+.       +..  +.+......++ +.+....           .
T Consensus       297 -gY~~~~aG~ig~l~iv~Gmlga~~~gii~Dkt-k~f-------k~~--~~v~~~~~~v~~~~l~~~t-----------~  354 (480)
T KOG2563|consen  297 -GYEGVFAGYIGALMIVAGMLGALASGIIADKT-KKF-------KLT--TLVLYLFALVGTLMLLTCT-----------L  354 (480)
T ss_pred             -cCCccccchhHHHHHHHHHHHHHHHHhhhhhh-hhH-------HHH--HHHHHHHHHHHHHHHHHhh-----------c
Confidence             00023455556666666666666666666543 221       111  22222222223 2222111           1


Q ss_pred             cccchhHHHHHHHHHHHHHHhhhhhhhheeecccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc-cCcccccccc
Q 008231          445 IQISAFWLVPQYFLVGAGEAFVYVGQLEFFIREGPERMKSMSTGLFLSAISMGMFVSSMLVSIVDKITN-KHWLRSNLNK  523 (573)
Q Consensus       445 ~~~~~~~lv~~~~l~g~~~~~~~~~~~~~~~~~~p~~~rg~~~gi~~~~~~lg~~ig~~~~~~i~~~~~-~~w~~~~~~~  523 (573)
                      .....+++.....+.|.+.....|...++..|..=+...|+..|+.+....+-+++-.++.+...+..+ .+|       
T Consensus       355 ~~~~~viv~~t~~~~g~~~~~~~Pig~ElgvE~TyPv~E~tSsGll~~~gq~f~~~~~~~~~~~~~~~~~~~~-------  427 (480)
T KOG2563|consen  355 FLGDSVIVFTTCGLLGFFGTGYLPIGFELGVETTYPVAEGTSSGLLNLSGQIFGVILVFIMGILAEDLGPPGN-------  427 (480)
T ss_pred             cCCceEehhhhHHHHHHhhcCCCCcceeeeeeeccccCCcccceeEEeehhHHHHHHHHHHHHHhhccCCCCC-------
Confidence            122333445556777888888889999999999877889999999988777777776767666654321 111       


Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHhhcchhhhcc
Q 008231          524 GKLNNFYWLLAVLGLLNFMVFLFFAMKHQYNVQHR  558 (573)
Q Consensus       524 ~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~  558 (573)
                        ....-+.++..+++.+++..++.+.++++..+.
T Consensus       428 --~~~~~i~~~~~~~l~~~lva~~r~~y~R~~~e~  460 (480)
T KOG2563|consen  428 --TFPANIFLTVSALLGAILVAFFRPDYRRLRAEA  460 (480)
T ss_pred             --CccchhHhHHHHHHHHHHHhhhhhhHHhHhhhh
Confidence              111123445556666666677767666555443

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=99.46  E-value=1.3e-12  Score=136.58  Aligned_cols=194  Identities=11%  Similarity=0.040  Sum_probs=148.8

Q ss_pred             CcccccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hcCCCchhhhHHHHHHHHHHHHHHhHHHHHhhhccch-h
Q 008231           23 PVDRSKTGGWLAAGLILGTELSERICAMGISMNLVTYLVG-DLHLSSAKSATIVTNFMGTLNLLGLLGGFLADAKLGR-Y  100 (573)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~-~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr-r  100 (573)
                      .++...+.+||.+++.....++..+.++.+.+-.-+|+++ |.+-+.+..|+++++..++..+..++.|++..|. ++ |
T Consensus        24 ~~~~~~~t~wrsi~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~-~~~k  102 (488)
T KOG2325|consen   24 SPLDERKTNWRSIYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKT-GSVK  102 (488)
T ss_pred             ccccccCCchHhHHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhccccccc-CCcc
Confidence            3444557799999999999999999988887778889885 5778888999999999999999999999999997 65 8


Q ss_pred             HHHHHHHHHHHHHHHHHHhhccCCCCCCCCCccccccccccccchhhHHHHHHHHHHHHHhcCccccccccccccCCCCC
Q 008231          101 LTVAIFASVTALVVGLLTSATSIPSMRPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDT  180 (573)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~  180 (573)
                      +-++.+.++.++|.++.......|.                     ...+.++++|++.|+|.+.. +..-+++++....
T Consensus       103 ~Pli~s~ii~~~g~llY~~l~~~~~---------------------~~~y~mL~~R~l~Gvg~~n~-a~lR~Y~a~~s~~  160 (488)
T KOG2325|consen  103 KPLIVSFLIAIIGNLLYLALAYVPN---------------------GVKYLMLVARILTGVGVGNF-AVLRAYIADASTV  160 (488)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHhccc---------------------chHHHHHHHHHHcCcCcccH-HHHHHHHHhccCc
Confidence            8888899999999988844332231                     26788999999999998886 4567899998887


Q ss_pred             CCchHHHhHHHHHHHHHHHHHhhhHHHHHHhhhhh----ccc---------chhHHHHHHHHHHHHHHHHHHhcCccc
Q 008231          181 SDPKEEKAMIFFFNRFYFAISIGSLFAVIVLVYVQ----DNV---------GRGWGYGISAGTMVVAAAILLIGTPWY  245 (573)
Q Consensus       181 ~~~~~~~~r~~~~~~~~~~~~ig~~~~~~~~~~l~----~~~---------g~~~~f~~~~~~~~~~~~~~~~~~~~~  245 (573)
                      ++      |.++++....+..+|..+||.+...+.    ..+         -+..+-|+.+++.++..+++.+..+|.
T Consensus       161 ~d------R~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~  232 (488)
T KOG2325|consen  161 ED------RPRAFAATSGGFVLGIILGPTIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKEV  232 (488)
T ss_pred             cc------hHHHHHHhhhHHHHHHHHhHHHHHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheeec
Confidence            88      999999887777777777777664432    111         123455667776666666655555543

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.45  E-value=1.4e-12  Score=135.54  Aligned_cols=169  Identities=14%  Similarity=0.099  Sum_probs=133.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHH
Q 008231           34 AAGLILGTELSERICAMGISMNLVTYLVGDLHLSSAKSATIVTNFMGTLNLLGLLGGFLADAKLGRYLTVAIFASVTALV  113 (573)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~  113 (573)
                      ..+.+....++..........+.++|. +++|.+..+.+.+.+.+.+...++.++.|+++||+ |||+.+.++..+.+++
T Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~~~~~~  283 (377)
T TIGR00890       206 QFWVLYLSFFLNAVSGLLLIGLYKPYG-QSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKI-GRQKTMSIVFGISAVG  283 (377)
T ss_pred             cHHHHHHHHHHHhHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhhhhhHHHHHHHHH
Confidence            344444444444455445555666665 56899999999999999999999999999999998 9999999998888888


Q ss_pred             HHHHHhhccCCCCCCCCCccccccccccccchhhHHHHHHHHHHHHHhcCccccccccccccCCCCCCCchHHHhHHHHH
Q 008231          114 VGLLTSATSIPSMRPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKAMIFFF  193 (573)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  193 (573)
                      ..++.+..+                        .....+++..++.+++.+...+..+.++.|.+|+++      |+++.
T Consensus       284 ~~~~~~~~~------------------------~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~------~~~~~  333 (377)
T TIGR00890       284 MAAMLFIPM------------------------LNDVLFLATVALVFFTWGGTISLFPSLVSDIFGPAN------SAANY  333 (377)
T ss_pred             HHHHHHccc------------------------chhHHHHHHHHHHHHHhccchhccHHHHHHHhhhhh------hhhHh
Confidence            777665421                        112234455677788888877778889999999988      99999


Q ss_pred             HHHHHHHHhhhHHHHHHhhhhhcccchhHHHHHHHHHHHHH
Q 008231          194 NRFYFAISIGSLFAVIVLVYVQDNVGRGWGYGISAGTMVVA  234 (573)
Q Consensus       194 ~~~~~~~~ig~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~  234 (573)
                      ++.+...++|..++|.+.|++.+..||++.|.+.++..+++
T Consensus       334 g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f~~~~~~~~~~  374 (377)
T TIGR00890       334 GFLYTAKAVAGIFGGLIASHALTEIGFEYTFIVTGAFALTS  374 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHh
Confidence            99999999999999999999999999999998877665544

>TIGR00889 2A0110 nucleoside transporter

Probab=99.43  E-value=1.5e-12  Score=138.29  Aligned_cols=178  Identities=11%  Similarity=-0.018  Sum_probs=135.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC--------chhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHH
Q 008231           36 GLILGTELSERICAMGISMNLVTYLVGDLHLS--------SAKSATIVTNFMGTLNLLGLLGGFLADAKLGRYLTVAIFA  107 (573)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s--------~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~  107 (573)
                      +..++..++..........+.+.|+.+ .|.+        ..+.+.+.++..+...++.++.|+++||+ |||+++.++.
T Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~-g~r~~l~~~~  288 (418)
T TIGR00889       211 AIFFFFSMLLGAPLQITNIFGNGFLHE-FGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRF-GIKKVMLLSL  288 (418)
T ss_pred             eeHHHHHHHHHhHHHHHHHhHHHHHHH-hcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHH
Confidence            344444444444444555667778764 4443        46678999999999999999999999998 9999999999


Q ss_pred             HHHHHHHHHHHhhccCCCCCCCCCccccccccccccchhhHHHHHHHHHHHHHhcCccccccccccccCCCCCCCchHHH
Q 008231          108 SVTALVVGLLTSATSIPSMRPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEK  187 (573)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~~~~~  187 (573)
                      ++..++..++......+                      .+.+.+++.+++.|++.+...+....++.|.+|+++     
T Consensus       289 ~~~~v~~~l~~~~~~~~----------------------~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~-----  341 (418)
T TIGR00889       289 VAWALRFGFFAYGDPEY----------------------FGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHI-----  341 (418)
T ss_pred             HHHHHHHHHHHHcCcch----------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH-----
Confidence            98888776666531100                      134567778899999998888888899999999888     


Q ss_pred             hHHHHHHHHH-HHHHhhhHHHHHHhhhhhcc------cchhHHHHHHHHHHHHHHHHHHhcCc
Q 008231          188 AMIFFFNRFY-FAISIGSLFAVIVLVYVQDN------VGRGWGYGISAGTMVVAAAILLIGTP  243 (573)
Q Consensus       188 ~r~~~~~~~~-~~~~ig~~~~~~~~~~l~~~------~g~~~~f~~~~~~~~~~~~~~~~~~~  243 (573)
                       |++++++.+ ...++|..+||+++|++.+.      +||+.+|.+.++..+++.+.+.+..+
T Consensus       342 -~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~  403 (418)
T TIGR00889       342 -RASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFK  403 (418)
T ss_pred             -HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhC
Confidence             999999997 56789999999999999887      46999998877766666555544444

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.41  E-value=5.7e-12  Score=132.84  Aligned_cols=165  Identities=13%  Similarity=-0.039  Sum_probs=131.9

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHhhcc
Q 008231           43 LSERICAMGISMNLVTYLVGDLHLSSAKSATIVTNFMGTLNLLGLLGGFLADAKLGRYLTVAIFASVTALVVGLLTSATS  122 (573)
Q Consensus        43 ~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~  122 (573)
                      .+..++++....+++.|+.+ .|+  .+.++..+.+.++..++.++.|++.||+ |||+.+..+..+.+++..+..+.. 
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~~~~~~~~~~~~~~~~~~~~-  300 (399)
T PRK05122        226 ALASIGFGTIATFITLYYAA-RGW--DGAALALTLFGVAFVGARLLFGNLINRL-GGLRVAIVSLLVEILGLLLLWLAP-  300 (399)
T ss_pred             HHHHHHHHHHHHHHHHHHHH-ccc--ccchHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHHhc-
Confidence            34455666677788888764 465  3456667788888899999999999998 999999988888888777666542 


Q ss_pred             CCCCCCCCCccccccccccccchhhHHHHHHHHHHHHHhcCccccccccccccCCCCCCCchHHHhHHHHHHHHHHHHHh
Q 008231          123 IPSMRPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKAMIFFFNRFYFAISI  202 (573)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~i  202 (573)
                                               +.+.+++.+++.|++.+...+.......|.+|++.      |+++.++++...++
T Consensus       301 -------------------------~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------~g~~~g~~~~~~~~  349 (399)
T PRK05122        301 -------------------------SPWMALIGAALTGFGFSLVFPALGVEAVKRVPPQN------RGAALGAYSVFLDL  349 (399)
T ss_pred             -------------------------cHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCHHH------HHHHHHHHHHHHHH
Confidence                                     44566777888999998888877777888888877      99999999999999


Q ss_pred             hhHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHHHHhcCc
Q 008231          203 GSLFAVIVLVYVQDNVGRGWGYGISAGTMVVAAAILLIGTP  243 (573)
Q Consensus       203 g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~  243 (573)
                      |..+++.+.|++.+..||++.|++.++..+++.+......+
T Consensus       350 g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  390 (399)
T PRK05122        350 SLGITGPLAGLVASWFGYPSIFLAAALAALLGLALTWLLYR  390 (399)
T ss_pred             HHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            99999999999999899999999888777776665554444

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.41  E-value=6.3e-12  Score=131.03  Aligned_cols=166  Identities=15%  Similarity=0.019  Sum_probs=129.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHh
Q 008231           40 GTELSERICAMGISMNLVTYLVGDLHLSSAKSATIVTNFMGTLNLLGLLGGFLADAKLGRYLTVAIFASVTALVVGLLTS  119 (573)
Q Consensus        40 ~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~  119 (573)
                      ...++.....+.....+|.|+++++|.++.+.+++.+...+...++.+++|+++||+ |||+++.++..+..++.....+
T Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~~~~~~~~~~~~~~~  284 (375)
T TIGR00899       206 VACTLMWGCNILYIINMPLLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRF-GKRRLMLLAALAGVAFYTGLAA  284 (375)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-cchhHHHHHHHHHHHHHHHHHH
Confidence            333343344444556788899999999999999988888777888889999999998 9999988877665554444433


Q ss_pred             hccCCCCCCCCCccccccccccccchhhHHHHHHHHHHHHHhcCccccccccccccCCCCCCCchHHHhHHHHHHHHHHH
Q 008231          120 ATSIPSMRPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKAMIFFFNRFYFA  199 (573)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  199 (573)
                      .                          .+.+.+++.+.+.|++.+...+....+..|..|+ +      ++++.++++..
T Consensus       285 ~--------------------------~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~-~------~~~~~~~~~~~  331 (375)
T TIGR00899       285 D--------------------------NSLWALLMLQLLNAIFIGILAGIGMLYFQDLMPG-R------AGAATTLYTNT  331 (375)
T ss_pred             H--------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc-h------hhHHHHHHHHH
Confidence            2                          2455666777888888888777777888888764 3      67999999999


Q ss_pred             HHhhhHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHHHH
Q 008231          200 ISIGSLFAVIVLVYVQDNVGRGWGYGISAGTMVVAAAILL  239 (573)
Q Consensus       200 ~~ig~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~  239 (573)
                      .++|..++|.+.|++.+..||+..|++.++..+++.+...
T Consensus       332 ~~~g~~~g~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~  371 (375)
T TIGR00899       332 GRVGWIIAGSVGGILAERWSYHAVYWFAIVMLIVALFCLL  371 (375)
T ss_pred             HHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999988877766665543

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.39  E-value=1.9e-12  Score=135.30  Aligned_cols=168  Identities=21%  Similarity=0.138  Sum_probs=131.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHH
Q 008231           33 LAAGLILGTELSERICAMGISMNLVTYLVGDLHLSSAKSATIVTNFMGTLNLLGLLGGFLADAKLGRYLTVAIFASVTAL  112 (573)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~  112 (573)
                      +..+......++....++....++|.|+++++|.+..+.+.+.....+...++.+++|+++||+ |||+.+..+..+..+
T Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~~~~~  297 (394)
T TIGR00883       219 KPFLLGLGLVIATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRI-GRRPVLIIFTVLAAL  297 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-chHHHHHHHHHHHHH
Confidence            3466666777777788888889999999999999999999999999999999999999999998 999987765544433


Q ss_pred             HH-HH-HHhhccCCCCCCCCCccccccccccccchhhHHHHHHHHHHHHHhcCccccccccccccCCCCCCCchHHHhHH
Q 008231          113 VV-GL-LTSATSIPSMRPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKAMI  190 (573)
Q Consensus       113 ~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~  190 (573)
                      .. .. ..+...                        .+.+.++...++.+++.+...+...+++.|.+|+++      |+
T Consensus       298 ~~~~~~~~~~~~------------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~~  347 (394)
T TIGR00883       298 LAVPLLMALLDS------------------------GSFTLFFFLVLGLALIGGMYTGPMGSFLPELFPTEV------RY  347 (394)
T ss_pred             HHHHHHHHHhcC------------------------CchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCccc------ee
Confidence            32 12 222110                        134455666777888888888889999999999988      99


Q ss_pred             HHHHH-HHHHHHhhhHHHHHHhhhhhcccc-hhHHHHHHHHHH
Q 008231          191 FFFNR-FYFAISIGSLFAVIVLVYVQDNVG-RGWGYGISAGTM  231 (573)
Q Consensus       191 ~~~~~-~~~~~~ig~~~~~~~~~~l~~~~g-~~~~f~~~~~~~  231 (573)
                      ++.++ ++.+..+|..++|.++|++.+..| |++.++..++..
T Consensus       348 ~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g~~~~~~~~~~~~~  390 (394)
T TIGR00883       348 TGASLAYNLAGAIFGGFAPYIAAALVAMTGDWYAIGYYLAALA  390 (394)
T ss_pred             eEeeehhHhHHHHHhhHHHHHHHHHHHHcCcchhHHHHHHHHH
Confidence            99998 556677899999999999999888 887766555433

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>PRK09952 shikimate transporter; Provisional

Probab=99.39  E-value=7.2e-12  Score=133.91  Aligned_cols=181  Identities=14%  Similarity=-0.032  Sum_probs=130.0

Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHH
Q 008231           31 GWLAAGLILGTELSERICAMGISMNLVTYLVGDLHLSSAKSATIVTNFMGTLNLLGLLGGFLADAKLGRYLTVAIFASVT  110 (573)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~  110 (573)
                      +++.........++..+.+|....+++.|+++.+|++......+.........++.++.|+++||+ |||+++..+.++.
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~-grr~~~~~~~~~~  326 (438)
T PRK09952        248 HPGAFLKIIALRLCELLTMYIVTAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRF-GRRRVYITGALIG  326 (438)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHH
Confidence            333333334455666778888899999999999999988766666666777788889999999998 9999988887665


Q ss_pred             HHHHHHHHhhccCCCCCCCCCccccccccccccchhhHHHHHHHHHHHHHhcCccccccccccccCCCCCCCchHHHhHH
Q 008231          111 ALVVGLLTSATSIPSMRPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKAMI  190 (573)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~  190 (573)
                      .++...+.......                      .....+++..++.+++.+...+...+++.|.+|++.      |+
T Consensus       327 ~~~~~~~~~~~~~~----------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~------r~  378 (438)
T PRK09952        327 TLSAFPFFMALEAQ----------------------SIFWIVFFSIMLANIAHDMVVCVQQPMFTEMFGASY------RY  378 (438)
T ss_pred             HHHHHHHHHHHHcC----------------------ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcch------hH
Confidence            55443332211000                      123344445566677777777778899999999987      99


Q ss_pred             HHHHHH-HHHHHhhhHHHHHHhhhhhccc--chhHHHHHHHHHHHHHHHHHHh
Q 008231          191 FFFNRF-YFAISIGSLFAVIVLVYVQDNV--GRGWGYGISAGTMVVAAAILLI  240 (573)
Q Consensus       191 ~~~~~~-~~~~~ig~~~~~~~~~~l~~~~--g~~~~f~~~~~~~~~~~~~~~~  240 (573)
                      .+.++. +.+..+|+.++|.+.+++.+..  +|..++.+.++..+++.+..+.
T Consensus       379 tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~~~  431 (438)
T PRK09952        379 SGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTALL  431 (438)
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHH
Confidence            999984 4455689999999999998744  4788777776666666665444

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.39  E-value=1.2e-11  Score=126.94  Aligned_cols=172  Identities=26%  Similarity=0.178  Sum_probs=148.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhHHHHHhhhccchhH-HHHHHHHHHHH
Q 008231           34 AAGLILGTELSERICAMGISMNLVTYLVGDLHLSSAKSATIVTNFMGTLNLLGLLGGFLADAKLGRYL-TVAIFASVTAL  112 (573)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~-~~~~~~~~~~~  112 (573)
                      ..+...+..++..........+.+.++.+.+|.+..+.+.+.+...+...++.++.|++.||+ |||+ .+..+..+..+
T Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~i  254 (352)
T cd06174         176 LLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRL-GRRRLLLLIGLLLAAL  254 (352)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHH
Confidence            344455556666677777788888998888899999999999999999999999999999998 9999 99999998888


Q ss_pred             HHHHHHhhccCCCCCCCCCccccccccccccchhhHHHHHHHHHHHHHhcCccccccccccccCCCCCCCchHHHhHHHH
Q 008231          113 VVGLLTSATSIPSMRPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKAMIFF  192 (573)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~  192 (573)
                      +...+....                          +.+.+++..++.|++.+...+...+++.|..|+++      |++.
T Consensus       255 ~~~~~~~~~--------------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~  302 (352)
T cd06174         255 GLLLLALAP--------------------------SLALLLVALLLLGFGLGFAFPALLTLASELAPPEA------RGTA  302 (352)
T ss_pred             HHHHHHHhc--------------------------cHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHH------HHHH
Confidence            888877652                          45677788899999999999999999999999887      9999


Q ss_pred             HHHHHHHHHhhhHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHHH
Q 008231          193 FNRFYFAISIGSLFAVIVLVYVQDNVGRGWGYGISAGTMVVAAAIL  238 (573)
Q Consensus       193 ~~~~~~~~~ig~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~  238 (573)
                      +++.+...++|..++|.+.+++.+..||++.+.+.++..+++.+..
T Consensus       303 ~~~~~~~~~~~~~i~~~i~g~l~~~~~~~~~~~~~~~~~~i~~i~~  348 (352)
T cd06174         303 SGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALLL  348 (352)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999998999999998887776665543

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.38  E-value=2.8e-12  Score=129.68  Aligned_cols=179  Identities=17%  Similarity=0.068  Sum_probs=144.1

Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhHHHHHhhhcc-chhHHHHHH-HH
Q 008231           31 GWLAAGLILGTELSERICAMGISMNLVTYLVGDLHLSSAKSATIVTNFMGTLNLLGLLGGFLADAKL-GRYLTVAIF-AS  108 (573)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~-Grr~~~~~~-~~  108 (573)
                      +.|.+|.++++.++-.+.-|++..+.|.|+.+..|+|..++++..+.|-.++..+++++|+++||+. |||..+.+. ++
T Consensus       250 ~Nk~iW~la~a~vfvYivR~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~  329 (448)
T COG2271         250 KNKLIWLLALANVFVYVVRYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFML  329 (448)
T ss_pred             cChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHHH
Confidence            4468999999999999999999999999999999999999999999999999999999999999975 777665544 44


Q ss_pred             HHHHHHHHHHhhccCCCCCCCCCccccccccccccchhhHHHHHHHHHHHHHhcCccccccccccccCCCCCCCchHHHh
Q 008231          109 VTALVVGLLTSATSIPSMRPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKA  188 (573)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (573)
                      ...++.+..-++.+                        .+..+..+..+++|+..-+..-.+.....|..|++.      
T Consensus       330 ~i~~~~~~~w~~~~------------------------~~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~A------  379 (448)
T COG2271         330 LITASLVLYWLAPN------------------------GSYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPKKA------  379 (448)
T ss_pred             HHHHHHHHHHcCCC------------------------ccHHHHHHHHHHHHHHHhhHHHHHHHHHhccccHhh------
Confidence            44455555554421                        245666667777777666655555566788889887      


Q ss_pred             HHHHHHHHHHHHHh-hhHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHHHH
Q 008231          189 MIFFFNRFYFAISI-GSLFAVIVLVYVQDNVGRGWGYGISAGTMVVAAAILL  239 (573)
Q Consensus       189 r~~~~~~~~~~~~i-g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~  239 (573)
                      -|++.|+......+ |+.++....|++.|.+||...|.+..+.++++.+.+.
T Consensus       380 aGtA~Gf~Glf~Yl~Ga~~a~~~~g~i~d~~gW~g~Fi~~~~~a~l~~lll~  431 (448)
T COG2271         380 AGTATGFVGLFAYLIGAALAGLPLGYIADTWGWDGGFIVLSIAALLAILLLL  431 (448)
T ss_pred             ccchhchhhhHHHHhhHHhcCCcceeeEecCCCcchHHHHHHHHHHHHHHHH
Confidence            99999998887777 9999999999999999999999877776666655443

>PRK03699 putative transporter; Provisional

Probab=99.38  E-value=9.6e-12  Score=131.04  Aligned_cols=171  Identities=13%  Similarity=0.132  Sum_probs=133.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHH
Q 008231           33 LAAGLILGTELSERICAMGISMNLVTYLVGDLHLSSAKSATIVTNFMGTLNLLGLLGGFLADAKLGRYLTVAIFASVTAL  112 (573)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~  112 (573)
                      +.++...+..++....++++..++|.|+++.+|+|..+.+.+.+.+.++..++.+++|+++||+ +||+.+.....+.++
T Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~-~~~~~l~~~~~~~~~  283 (394)
T PRK03699        205 IGVLFLAIAALLYILAQLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFF-DLQRILTVLAGLALV  283 (394)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHh-chhhHHHHHHHHHHH
Confidence            3556666666676677788889999999999999999999999999999999999999999998 999998887776666


Q ss_pred             HHHHHHhhccCCCCCCCCCccccccccccccchhhHHHHHHHHHHHHHhcCccccccccccccCCCCCCCchHHHhHHHH
Q 008231          113 VVGLLTSATSIPSMRPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKAMIFF  192 (573)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~  192 (573)
                      ...+.....                          +...+.+..++.|++.+...+...++..+..|+ +      +++.
T Consensus       284 ~~~~~~~~~--------------------------~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~-~------~~~~  330 (394)
T PRK03699        284 LMYLFVNTD--------------------------DPSHLLYAILGLGFFSSAIYTTIITLGSQQTKV-A------SPKL  330 (394)
T ss_pred             HHHHHHHcC--------------------------CchHHHHHHHHHHHHHHHHHHHHHHHHHHHccC-C------CHHH
Confidence            555554432                          233444556677777777777777777776653 3      5566


Q ss_pred             HHHHHHHHHhhhHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHH
Q 008231          193 FNRFYFAISIGSLFAVIVLVYVQDNVGRGWGYGISAGTMVVAAAI  237 (573)
Q Consensus       193 ~~~~~~~~~ig~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~  237 (573)
                      .+......++|..++|.+.|++.+..|++..+++.++..+++.+.
T Consensus       331 ~g~~~~~~~~g~~i~p~~~G~l~~~~g~~~~~~~~~~~~~~~~~~  375 (394)
T PRK03699        331 VNFILTCGTIGTMLTFVVTSPIVAHFGLQAALLTANGLYAVVFVM  375 (394)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHHHHhCchhhhhhhHHHHHHHHHH
Confidence            788888889999999999999999999999988777766655443

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.37  E-value=1.1e-11  Score=131.03  Aligned_cols=170  Identities=19%  Similarity=0.014  Sum_probs=129.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHH
Q 008231           36 GLILGTELSERICAMGISMNLVTYLVGDLHLSSAKSATIVTNFMGTLNLLGLLGGFLADAKLGRYLTVAIFASVTALVVG  115 (573)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~  115 (573)
                      +.+....++....++....++|.|+.+ .|++..+.+.+.+.+.++..++.++.|+++||+ |||+.+..+.....++..
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~~p~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~  300 (406)
T PRK11551        223 LLLWISYFFTLIVLYFLLNWLPSLLVG-QGLSRSQAGLVQIAFNIGGALGSLLIGALMDRL-RPRRVVLLIYAGILASLA  300 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHH
Confidence            334444445555666777888888874 799999999999999999999999999999998 999998887666666555


Q ss_pred             HHHhhccCCCCCCCCCccccccccccccchhhHHHHHHHHHHHHHhcCccccccccccccCCCCCCCchHHHhHHHHHHH
Q 008231          116 LLTSATSIPSMRPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKAMIFFFNR  195 (573)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  195 (573)
                      +..+..                          +.+.+.+..++.|++.+...+...++..|.+|+++      |+++.++
T Consensus       301 ~~~~~~--------------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~  348 (406)
T PRK11551        301 ALAAAP--------------------------SFAGMLLAGFAAGLFVVGGQSVLYALAPLFYPTQV------RGTGVGA  348 (406)
T ss_pred             HHHhcC--------------------------cHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcchhh------hhhhhhH
Confidence            554432                          33445555667777777777888889999999988      9999999


Q ss_pred             HHHHHHhhhHHHHHHhhhhhcccc-hhHHHHHHHHHHHHHHHHHH
Q 008231          196 FYFAISIGSLFAVIVLVYVQDNVG-RGWGYGISAGTMVVAAAILL  239 (573)
Q Consensus       196 ~~~~~~ig~~~~~~~~~~l~~~~g-~~~~f~~~~~~~~~~~~~~~  239 (573)
                      .+....+|..++|.+.|++.+..+ |...+++.....+++.+..+
T Consensus       349 ~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~  393 (406)
T PRK11551        349 AVAVGRLGSMAGPLLAGQLLALGRSTVGVIGASIPVILVAALAAL  393 (406)
T ss_pred             HHHhhhHHHHHHhhhHhhhhccCCchHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999988654 55566655555444444333

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.36  E-value=3.2e-11  Score=127.00  Aligned_cols=178  Identities=13%  Similarity=-0.089  Sum_probs=136.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHH
Q 008231           33 LAAGLILGTELSERICAMGISMNLVTYLVGDLHLSSAKSATIVTNFMGTLNLLGLLGGFLADAKLGRYLTVAIFASVTAL  112 (573)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~  112 (573)
                      +..+.+.+..++...+++++..++|.|+.+ +|++..+.+...+.+.++..++.++.|+++||+ |||+.+.++..+..+
T Consensus       205 ~~~~~l~~~~~~~~~~~~~~~~~lp~~l~~-~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~-~~~~~~~~~~~l~~~  282 (393)
T PRK09705        205 PRAWTLGVYFGLINGGYASLIAWLPAFYIE-IGASAQYSGSLLALMTLGQAAGALLMPAMARHQ-DRRKLLMLALVLQLV  282 (393)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhc-cchHHHHHHHHHHHH
Confidence            345666666667778888899999999985 799999999999999999999999999999998 999999888877777


Q ss_pred             HHHHHHhhccCCCCCCCCCccccccccccccchhhHHHHHHHHHHHHHhcCccccccccccccCCCCC-CCchHHHhHHH
Q 008231          113 VVGLLTSATSIPSMRPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDT-SDPKEEKAMIF  191 (573)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~-~~~~~~~~r~~  191 (573)
                      +..++....                         .+...+.  .++.|++.+...+.......+..++ ++      |++
T Consensus       283 ~~~~~~~~~-------------------------~~~~~~~--~~l~g~g~g~~~~~~~~~~~~~~~~~~~------~g~  329 (393)
T PRK09705        283 GFCGFIWLP-------------------------LQLPVLW--AMVCGLGLGGAFPLCLLLALDHSVQPAI------AGK  329 (393)
T ss_pred             HHHHHHHcc-------------------------chHHHHH--HHHHHHhccchHHHHHHHHHhhcCCHHH------HHH
Confidence            665554321                         1111121  2356777777777776666777753 34      899


Q ss_pred             HHHHHHHHHHhhhHHHHHHhhhhhcccc-hhHHHHHHHHHHHHHHHHHHhcCccc
Q 008231          192 FFNRFYFAISIGSLFAVIVLVYVQDNVG-RGWGYGISAGTMVVAAAILLIGTPWY  245 (573)
Q Consensus       192 ~~~~~~~~~~ig~~~~~~~~~~l~~~~g-~~~~f~~~~~~~~~~~~~~~~~~~~~  245 (573)
                      .+++.+...+++..++|.+.|++.+..| |...|.+.++.+++..+......++.
T Consensus       330 ~~g~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  384 (393)
T PRK09705        330 LVAFMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVGLMIITLRFAPAR  384 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhcccc
Confidence            9999999999999999999999999886 77778877776666666655555543

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.36  E-value=2.2e-11  Score=127.81  Aligned_cols=169  Identities=7%  Similarity=-0.102  Sum_probs=144.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHH
Q 008231           33 LAAGLILGTELSERICAMGISMNLVTYLVGDLHLSSAKSATIVTNFMGTLNLLGLLGGFLADAKLGRYLTVAIFASVTAL  112 (573)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~  112 (573)
                      |.++..+...++....++...++.++|+++ +|.+..+.|.+.+...+...+..++.|++.||+ |+|+.+.++.++..+
T Consensus       205 ~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~-~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~-g~~~~l~~~~~~~~~  282 (382)
T TIGR00902       205 PMNLRFLAAVCLIQGAHAAYYGFSAIYWQA-AGISASATGLLWGIGVLAEIIIFAFSNKLFQNC-SARDLLLISAIACVG  282 (382)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhC-CHHHHHHHHHHHHHH
Confidence            556777777777777888888899999974 899999999999999999999999999999998 999999999999999


Q ss_pred             HHHHHHhhccCCCCCCCCCccccccccccccchhhHHHHHHHHHHHHHhcCccccccccccccCCCCCCCchHHHhHHHH
Q 008231          113 VVGLLTSATSIPSMRPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKAMIFF  192 (573)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~  192 (573)
                      ...+++++                          ++.+.+++...+.|+..+...+....++.+. |+++      |+++
T Consensus       283 ~~~~~~~~--------------------------~~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~------~~~~  329 (382)
T TIGR00902       283 RWAIIGAI--------------------------EAFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSE------IAKL  329 (382)
T ss_pred             HHHHHHhH--------------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhh------HHHH
Confidence            98888765                          3677888899999999999999999999987 8777      8999


Q ss_pred             HHHHH-HHHHhhhHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHH
Q 008231          193 FNRFY-FAISIGSLFAVIVLVYVQDNVGRGWGYGISAGTMVVAAAI  237 (573)
Q Consensus       193 ~~~~~-~~~~ig~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~  237 (573)
                      .++++ .+..+|..+||.++|++.+.+|+ ..|++.++..++++++
T Consensus       330 q~~~~~~~~g~g~~~g~~~~G~l~~~~g~-~~~~~~~~~~~~~~~~  374 (382)
T TIGR00902       330 QALYNALAMGGLIAIFTAFAGFIYPTLGA-GTFVFMAIIAAAAFFL  374 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHHH
Confidence            99976 46789999999999999999986 5677666666555443

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.35  E-value=1.4e-11  Score=137.73  Aligned_cols=132  Identities=8%  Similarity=-0.007  Sum_probs=106.7

Q ss_pred             HHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCccccccccccccchhhHHHHHHH
Q 008231           75 VTNFMGTLNLLGLLGGFLADAKLGRYLTVAIFASVTALVVGLLTSATSIPSMRPPQCDDYRRKHHQCIEANGKQLAMLYA  154 (573)
Q Consensus        75 ~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (573)
                      ..+..++..++.+++|+++||+ |||+++++++++.+++.++++++.                          +...+++
T Consensus       601 ~~l~~l~~i~G~il~g~L~Dr~-GRr~~l~~~~~lsai~~ll~~~~~--------------------------s~~~ll~  653 (742)
T TIGR01299       601 NFLGTLAVLPGNIVSALLMDKI-GRLRMLAGSMVLSCISCFFLSFGN--------------------------SESAMIA  653 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHHHHHc--------------------------cHHHHHH
Confidence            4455678889999999999998 999999999999999888887753                          2345566


Q ss_pred             HHHHHHhcCccccccccccccCCCCCCCchHHHhHHHHHHHHHHHHHhhhHHHHHHhhhhhcccchhHHHHHHHHHHHHH
Q 008231          155 ALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKAMIFFFNRFYFAISIGSLFAVIVLVYVQDNVGRGWGYGISAGTMVVA  234 (573)
Q Consensus       155 ~~~l~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~  234 (573)
                      .+++.+++.++..+...++++|++|++.      |++++|+.+....+|+++||++++.+.+. +...+|++.+++.+++
T Consensus       654 ~~~l~g~~~~~~~~~~~a~~aEl~Pt~~------Rgta~Gi~~~~~rlGaiigp~i~g~L~~~-~~~~pf~i~a~~lll~  726 (742)
T TIGR01299       654 LLCLFGGLSIAAWNALDVLTVELYPSDK------RATAFGFLNALCKAAAVLGILIFGSFVGI-TKAAPILFASAALACG  726 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHH
Confidence            6777777777777888899999999988      99999999999999999999999988763 4566777776666665


Q ss_pred             HHHHHh
Q 008231          235 AAILLI  240 (573)
Q Consensus       235 ~~~~~~  240 (573)
                      .++..+
T Consensus       727 ~ll~~~  732 (742)
T TIGR01299       727 GLLALK  732 (742)
T ss_pred             HHHHHh
Confidence            554443

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.35  E-value=3.7e-12  Score=135.38  Aligned_cols=160  Identities=13%  Similarity=0.055  Sum_probs=127.4

Q ss_pred             HHHHHHHHHHHHHhhh---cCCCchhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHhhccCC
Q 008231           48 CAMGISMNLVTYLVGD---LHLSSAKSATIVTNFMGTLNLLGLLGGFLADAKLGRYLTVAIFASVTALVVGLLTSATSIP  124 (573)
Q Consensus        48 ~~~~~~~~l~~yl~~~---~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~~  124 (573)
                      .+.......+.|+.+.   .+.+..+.+.+.++..+...++.+++|+++||+ |||+.+..+..+.+++..++.++.   
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~l~~~~~~l~~~~~---  313 (420)
T PRK09528        238 FYDVFDQQFPNFFASFFATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRI-GAKNALLLAGTIMAVRIIGSGFAT---  313 (420)
T ss_pred             HHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcchhhHHHHHHHHHHHHHHHhcc---
Confidence            3333444566666643   366777889999999999999999999999998 999999998888888887777653   


Q ss_pred             CCCCCCCccccccccccccchhhHHHHHHHHHHHHHhcCccccccccccccCCCCCCCchHHHhHHHHHHH-HHHHHHhh
Q 008231          125 SMRPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKAMIFFFNR-FYFAISIG  203 (573)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~~ig  203 (573)
                                             +.+.+++.+++.+++.+...+....++.|.+|++.      |++..+. ++...++|
T Consensus       314 -----------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~a~~~~~~~~~~~~lg  364 (420)
T PRK09528        314 -----------------------GPLEVSILKLLHAFEVPFLLVGVFKYITLNFDVRL------SATIYLVGFQFAKQLG  364 (420)
T ss_pred             -----------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccc------eeeeeeehHHHHHHHH
Confidence                                   45667778888888887777777788899999887      8877665 67788999


Q ss_pred             hHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHHHHh
Q 008231          204 SLFAVIVLVYVQDNVGRGWGYGISAGTMVVAAAILLI  240 (573)
Q Consensus       204 ~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~  240 (573)
                      .+++|.+.|++.+..||+.+|.+.++..++..++..+
T Consensus       365 ~~ig~~~~G~l~~~~G~~~~f~~~~~~~~i~~~~~~~  401 (420)
T PRK09528        365 AVFLSTLAGNLYDSIGFQGTYLILGGIVLLFTLISVF  401 (420)
T ss_pred             HHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999877766555544443

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.34  E-value=1.2e-11  Score=130.56  Aligned_cols=165  Identities=15%  Similarity=0.006  Sum_probs=128.4

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhcCCCch---hhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHh
Q 008231           43 LSERICAMGISMNLVTYLVGDLHLSSA---KSATIVTNFMGTLNLLGLLGGFLADAKLGRYLTVAIFASVTALVVGLLTS  119 (573)
Q Consensus        43 ~~~~~~~~~~~~~l~~yl~~~~~~s~~---~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~  119 (573)
                      +........+.+.++.|+.+..+....   ..+.+.++..+...++.++.|+++||+ |||+.+..+..+..++.++..+
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~~~~~  307 (408)
T PRK09874        229 LIIQVATGSIAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRI-GPEKILITALIFSVLLLIPMSF  307 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-ccchhHHHHHHHHHHHHHHHHH
Confidence            333444445667778887765442221   234555666777788889999999998 9999999988877776666655


Q ss_pred             hccCCCCCCCCCccccccccccccchhhHHHHHHHHHHHHHhcCccccccccccccCCCCCCCchHHHhHHHHHHHHHHH
Q 008231          120 ATSIPSMRPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKAMIFFFNRFYFA  199 (573)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  199 (573)
                      ..                          +.+.+++.+++.|++.+...+...+++.+..|++.      |++.+++++..
T Consensus       308 ~~--------------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~~~~~~~  355 (408)
T PRK09874        308 VQ--------------------------TPLQLGILRFLLGAADGALLPAVQTLLVYNSSNQI------AGRIFSYNQSF  355 (408)
T ss_pred             hc--------------------------cHHHHHHHHHHHHhhhHhhHHHHHHHHHHhCCccc------ceeeehHHHHH
Confidence            32                          45567778889999999998888888888888887      99999999999


Q ss_pred             HHhhhHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHHHHh
Q 008231          200 ISIGSLFAVIVLVYVQDNVGRGWGYGISAGTMVVAAAILLI  240 (573)
Q Consensus       200 ~~ig~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~  240 (573)
                      .++|..+||.++|++.+..||++.|++.++..+++.+..++
T Consensus       356 ~~~g~~~gp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~  396 (408)
T PRK09874        356 RDIGNVTGPLMGAAISANYGFRAVFLVTAGVVLFNAVYSWN  396 (408)
T ss_pred             HHHHHHhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999888877776665443

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.33  E-value=3.8e-11  Score=125.24  Aligned_cols=176  Identities=16%  Similarity=-0.023  Sum_probs=129.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHH-HHHHHHHHH
Q 008231           33 LAAGLILGTELSERICAMGISMNLVTYLVGDLHLSSAKSATIVTNFMGTLNLLGLLGGFLADAKLGRYLT-VAIFASVTA  111 (573)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~-~~~~~~~~~  111 (573)
                      +..+..+...++....++....+.+.|+++.+|.+..+.+++.+...+...++.+++|+++||+ |||+. +........
T Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~  293 (399)
T TIGR00893       215 RRVWGLALGQFLVNIGLGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLL-LRRGKSLVFARKTAI  293 (399)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHH-hhcccchhHHHHHHH
Confidence            4567777777888888888889999999999999999999999999999999999999999998 88861 111111111


Q ss_pred             HH---HHHHHhhccCCCCCCCCCccccccccccccchhhHHHHHHHHHHHHHhcCccccccccccccCCCCCCCchHHHh
Q 008231          112 LV---VGLLTSATSIPSMRPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKA  188 (573)
Q Consensus       112 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (573)
                      ++   ..+..+.....                      .+.........+.+.+.+ ..+...+++.|.+|+++      
T Consensus       294 ~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~------  344 (399)
T TIGR00893       294 IAGLVLSLLMFATNYV----------------------NIPYAALALVALGFFGLG-AGAIGWALISDNAPGNI------  344 (399)
T ss_pred             HHHHHHHHHHHHhccc----------------------hhHHHHHHHHHHHHhchh-hhhHHHHHHHhhcChhH------
Confidence            11   11111111000                      122333333333444444 67888999999999988      


Q ss_pred             HHHHHHHHHHHHHhhhHHHHHHhhhhhcccc-hhHHHHHHHHHHHHHHHHH
Q 008231          189 MIFFFNRFYFAISIGSLFAVIVLVYVQDNVG-RGWGYGISAGTMVVAAAIL  238 (573)
Q Consensus       189 r~~~~~~~~~~~~ig~~~~~~~~~~l~~~~g-~~~~f~~~~~~~~~~~~~~  238 (573)
                      |++++++.+...++|..++|.+.|++.+..| |++.|.+.++..+++.+..
T Consensus       345 ~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~  395 (399)
T TIGR00893       345 AGLTGGLINSLGNLGGIVGPIVIGAIAATTGSFAGALMVVAALALIGALSY  395 (399)
T ss_pred             HHHHHHHHHHHHHHhhhhhhHHhhhhccCCCchhHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999888 9999887777666655443

>TIGR01272 gluP glucose/galactose transporter

Probab=99.33  E-value=1.8e-10  Score=117.06  Aligned_cols=83  Identities=14%  Similarity=0.023  Sum_probs=70.4

Q ss_pred             hHHHHHHHHHHHHHhcCccccccccccccCCCCCCCchHHHhHHHHHHHHHHHHHhhhHHHHHHhhhhhcc---------
Q 008231          147 KQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKAMIFFFNRFYFAISIGSLFAVIVLVYVQDN---------  217 (573)
Q Consensus       147 ~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~~~~~l~~~---------  217 (573)
                      .++..++++.++.|.|.+...+...+++++..++++      +.+.+++.+....+|..++|++++.+...         
T Consensus         8 ~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~------~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~   81 (310)
T TIGR01272         8 RYYVLFLGALFVLASGLTILQVAANPYVSILGPIET------AASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQV   81 (310)
T ss_pred             hHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcch------HHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhh
Confidence            367789999999999999999999999999999888      99999999999999999999999987732         


Q ss_pred             -------cchhHHHHHHHHHHHHHH
Q 008231          218 -------VGRGWGYGISAGTMVVAA  235 (573)
Q Consensus       218 -------~g~~~~f~~~~~~~~~~~  235 (573)
                             .+|+++|++.++..++..
T Consensus        82 ~~~~~~~~~~~~~yl~ia~~~~~~~  106 (310)
T TIGR01272        82 ATANAEAAKVHTPYLLLAGALAVLA  106 (310)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHH
Confidence                   368899885555443333

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=99.33  E-value=3.9e-12  Score=112.16  Aligned_cols=133  Identities=14%  Similarity=0.126  Sum_probs=113.5

Q ss_pred             HHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCccccccccccccchhhHHHHHHH
Q 008231           75 VTNFMGTLNLLGLLGGFLADAKLGRYLTVAIFASVTALVVGLLTSATSIPSMRPPQCDDYRRKHHQCIEANGKQLAMLYA  154 (573)
Q Consensus        75 ~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (573)
                      .+.+.++..++.++.|+++||+ |||+.+..+..+..++..++....                          +.+.+.+
T Consensus         4 ~~~~~~~~~~~~~~~g~~~d~~-g~~~~~~~~~~~~~~~~~~~~~~~--------------------------~~~~~~~   56 (141)
T TIGR00880         4 LAGYALGQLIYSPLSGLLTDRF-GRKPVLLVGLFIFVLSTAMFALSS--------------------------NITVLII   56 (141)
T ss_pred             EEeehhHHHHHHhhHHHHHhhc-chhHHHHHHHHHHHHHHHHHHHhc--------------------------cHHHHHH
Confidence            3456677888999999999998 999999999888888877776642                          5667788


Q ss_pred             HHHHHHhcCccccccccccccCCCCCCCchHHHhHHHHHHHHHHHHHhhhHHHHHHhhhhhcccchhHHHHHHHHHHHHH
Q 008231          155 ALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKAMIFFFNRFYFAISIGSLFAVIVLVYVQDNVGRGWGYGISAGTMVVA  234 (573)
Q Consensus       155 ~~~l~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~  234 (573)
                      .+++.|++.+...+...+++.|.+|+++      |+++.++.+...++|..++|.+.+++.+..+|++.|++..+..++.
T Consensus        57 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (141)
T TIGR00880        57 ARFLQGFGAAFALVAGAALIADIYPPEE------RGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAA  130 (141)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHCChhh------hhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHH
Confidence            8999999999988999999999999988      9999999999999999999999999999889999998877666655


Q ss_pred             HHHHHh
Q 008231          235 AAILLI  240 (573)
Q Consensus       235 ~~~~~~  240 (573)
                      .+...+
T Consensus       131 ~~~~~~  136 (141)
T TIGR00880       131 FILLAF  136 (141)
T ss_pred             HHHHhh
Confidence            554444

>PRK03545 putative arabinose transporter; Provisional

Probab=99.33  E-value=7.5e-11  Score=124.03  Aligned_cols=174  Identities=11%  Similarity=-0.087  Sum_probs=131.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHH
Q 008231           35 AGLILGTELSERICAMGISMNLVTYLVGDLHLSSAKSATIVTNFMGTLNLLGLLGGFLADAKLGRYLTVAIFASVTALVV  114 (573)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~  114 (573)
                      .+......++....+++...++++|+.+..|.|..+.+++.+.+.++..++.++.|+++||+ |||+.. .+..+..++.
T Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~-~~~~~~-~~~~~~~~~~  284 (390)
T PRK03545        207 LVSLYLLTVVVVTAHFTAYSYIEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRH-PSGFLL-IAIALLLVCL  284 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhcc-chhHHH-HHHHHHHHHH
Confidence            34444444555555666677888899888999999999999999999999999999999998 887654 4444444443


Q ss_pred             HHHHhhccCCCCCCCCCccccccccccccchhhHHHHHHHHHHHHHhcCccccccccccccCCCCCCCchHHHhHHHHHH
Q 008231          115 GLLTSATSIPSMRPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKAMIFFFN  194 (573)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  194 (573)
                      .+.....                         .+.+.+++..++.|++.+...+.....+.+..| ++      |+++++
T Consensus       285 ~~l~~~~-------------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~-~~------~~~~~g  332 (390)
T PRK03545        285 LLLLPAA-------------------------NSEWHLSVLSIFWGIAIMCIGLAMQVKVLKLAP-DA------TDVAMA  332 (390)
T ss_pred             HHHHHHh-------------------------chHHHHHHHHHHHHHHHhcchHHHHHHHHHhCC-Cc------HHHHHH
Confidence            3332211                         245566677778888887777777777777765 45      899999


Q ss_pred             HHHHHHHhhhHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHHHHhcC
Q 008231          195 RFYFAISIGSLFAVIVLVYVQDNVGRGWGYGISAGTMVVAAAILLIGT  242 (573)
Q Consensus       195 ~~~~~~~ig~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~  242 (573)
                      +++...++|..+||+++|++.+.+|++..|++.+...+++.+......
T Consensus       333 ~~~~~~~~g~~~G~~~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  380 (390)
T PRK03545        333 LFSGIFNIGIGAGALLGNQVSLHLGLSSIGYVGAALALAALVWSILIF  380 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHc
Confidence            999999999999999999999999999999988877777666554433

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.33  E-value=4.5e-11  Score=129.79  Aligned_cols=149  Identities=19%  Similarity=0.130  Sum_probs=116.0

Q ss_pred             HHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHhhccCCCCCCCC
Q 008231           51 GISMNLVTYLVGDLHLSSAKSATIVTNFMGTLNLLGLLGGFLADAKLGRYLTVAIFASVTALVVGLLTSATSIPSMRPPQ  130 (573)
Q Consensus        51 ~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (573)
                      ....++|.|+++++|++..+.+++.+.+.++..++.+++|+++||+ |||+++.++..+..++.++......        
T Consensus       293 ~~~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~~~~~~~~--------  363 (496)
T PRK03893        293 PIQALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWL-GTRKAYVCSLLISQLLIIPVFAIGG--------  363 (496)
T ss_pred             hHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHHhhccc--------
Confidence            4567889999989999999999999999999999999999999998 9999988887666655544333211        


Q ss_pred             CccccccccccccchhhHHHHHHHHHHHHHhcCccccccccccccCCCCCCCchHHHhHHHHHHHHHHHHHhhhHHHHHH
Q 008231          131 CDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKAMIFFFNRFYFAISIGSLFAVIV  210 (573)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~~  210 (573)
                                      .+.+.+.+..++.+.......+..++++.|.+|+++      |++++++++...++|..+||.+
T Consensus       364 ----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~~~~~~~~~~~g~~lgp~l  421 (496)
T PRK03893        364 ----------------ANVWVLGLLLFFQQMLGQGISGLLPKLIGGYFDTEQ------RAAGLGFTYNVGALGGALAPIL  421 (496)
T ss_pred             ----------------cHHHHHHHHHHHHHHHhcccchhhHHHHHhhCCHHH------hhcccchhhhhhhHHHHHHHHH
Confidence                            123333344444333333345667778899999888      9999999999999999999999


Q ss_pred             hhhhhcccchhHHHHHHHHH
Q 008231          211 LVYVQDNVGRGWGYGISAGT  230 (573)
Q Consensus       211 ~~~l~~~~g~~~~f~~~~~~  230 (573)
                      +|++.+.+||+..+.+.+..
T Consensus       422 ~g~l~~~~g~~~~~~~~~~~  441 (496)
T PRK03893        422 GALIAQRLDLGTALASLSFS  441 (496)
T ss_pred             HHHHhccCChHHHHHHHHHH
Confidence            99999999999887655443

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.32  E-value=3.8e-11  Score=128.21  Aligned_cols=178  Identities=16%  Similarity=0.000  Sum_probs=121.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhHHHHHhhhcc--chhHHHHHHHHHH
Q 008231           33 LAAGLILGTELSERICAMGISMNLVTYLVGDLHLSSAKSATIVTNFMGTLNLLGLLGGFLADAKL--GRYLTVAIFASVT  110 (573)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~--Grr~~~~~~~~~~  110 (573)
                      +.++.+.+..++....++++..++|.|+.+++|++..+.+...+.+.++..++.+++|+++||+.  +||+.........
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~  322 (434)
T PRK11663        243 PYIWLLSFSYVLVYVVRAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGI  322 (434)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHH
Confidence            34666666666777777788889999999899999999999999999999999999999999972  2233222221111


Q ss_pred             HHHHHHHHhhccCCCCCCCCCccccccccccccchhhHHHHHHHHHHHHHhcCccccccccccccCCCCCCCchHHHhHH
Q 008231          111 ALVVGLLTSATSIPSMRPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKAMI  190 (573)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~  190 (573)
                      .+..........                        .+.....+..+..|++............+|.+|++.      |+
T Consensus       323 ~~~~~~~~~~~~------------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g  372 (434)
T PRK11663        323 LLSVGSLWLMPF------------------------ASYVMQAACFFTIGFFVFGPQMLIGMAAAECSHKEA------AG  372 (434)
T ss_pred             HHHHHHHHHccc------------------------ccHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccHhh------HH
Confidence            111111111110                        011222222333343322222223456678888777      99


Q ss_pred             HHHHHHHHHHHhhhHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHHHHh
Q 008231          191 FFFNRFYFAISIGSLFAVIVLVYVQDNVGRGWGYGISAGTMVVAAAILLI  240 (573)
Q Consensus       191 ~~~~~~~~~~~ig~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~  240 (573)
                      ++.|+.+...++|..++|.+.|++.+..||+..|++.++..+++.+..+.
T Consensus       373 ~~~g~~~~~~~~g~~~~p~~~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~  422 (434)
T PRK11663        373 AATGFVGLFAYLGAALSGYPLAKVLEIWHWTGFFVVISIAAGISALLLLP  422 (434)
T ss_pred             hHHHHHHHHHHHHHHHhcccHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999998887776666554443

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.32  E-value=1.6e-11  Score=130.35  Aligned_cols=163  Identities=12%  Similarity=-0.033  Sum_probs=131.9

Q ss_pred             HHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHhhccCCCCCC
Q 008231           49 AMGISMNLVTYLVGDLHLSSAKSATIVTNFMGTLNLLGLLGGFLADAKLGRYLTVAIFASVTALVVGLLTSATSIPSMRP  128 (573)
Q Consensus        49 ~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (573)
                      ..++..++|.|+++.+|.+..+.+++.+.+.++..++.++.|++.||. ++++.+..+..+.+++.++..+.        
T Consensus       239 ~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~-~~~~~l~~~~~~~~~~~~~~~~~--------  309 (417)
T PRK10489        239 ASAVRVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSA-RPGLLMLLSTLGSFLAVGLFGLM--------  309 (417)
T ss_pred             HHhHHHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhcc-CcchHHHHHHHHHHHHHHHHHcc--------
Confidence            345667788999988999999999999999999999999999999997 88888888887777777666553        


Q ss_pred             CCCccccccccccccchhhHHHHHHHHHHHHHhcCccccccccccccCCCCCCCchHHHhHHHHHHHHHHHHHhhhHHHH
Q 008231          129 PQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKAMIFFFNRFYFAISIGSLFAV  208 (573)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~  208 (573)
                                        .+.....++.++.|++.+...+...+++.|..|++.      |++++++++...++|..+||
T Consensus       310 ------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~~~~~~g~~~g~  365 (417)
T PRK10489        310 ------------------PMWILAVLCLALFGYLSAISSLLQYTLLQTQTPDEM------LGRINGLWTAQNVTGDAIGA  365 (417)
T ss_pred             ------------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHH------HHHHHHHHHHHHhhhHhHHH
Confidence                              244556677778888888777777788999999887      99999999999999999999


Q ss_pred             HHhhhhhcccchhHHHHHHHHHHHHHHHHHHhcCcc
Q 008231          209 IVLVYVQDNVGRGWGYGISAGTMVVAAAILLIGTPW  244 (573)
Q Consensus       209 ~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~  244 (573)
                      .+.|++.+.+|++..+.+.++..++..++.....++
T Consensus       366 ~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  401 (417)
T PRK10489        366 ALLGGLGAMMTPVASASASGFGLLIIGVLLLLVLGE  401 (417)
T ss_pred             HHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHhccc
Confidence            999999999998888876666555444444443343

>PRK12382 putative transporter; Provisional

Probab=99.31  E-value=3.2e-11  Score=126.84  Aligned_cols=162  Identities=13%  Similarity=0.019  Sum_probs=130.3

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHhhcc
Q 008231           43 LSERICAMGISMNLVTYLVGDLHLSSAKSATIVTNFMGTLNLLGLLGGFLADAKLGRYLTVAIFASVTALVVGLLTSATS  122 (573)
Q Consensus        43 ~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~  122 (573)
                      ++....+..+..+.+.|+++ .|++.  .+.....+.++..++.++.|++.||+ ||||.+..+..+.+++..+..+.. 
T Consensus       226 ~l~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~~~~~~~~~~~~~~~~~-  300 (392)
T PRK12382        226 ALQGVGFAVIGTFVSLYFAS-KGWAM--AGFTLTAFGGAFVLMRVLFGWMPDRF-GGVKVAIVSLLVETVGLLLLWLAP-  300 (392)
T ss_pred             HHHHHHHhHHHHHHHHHHHh-cCCch--hHHHHHHHHHHHHHHHHHHHHHHHhc-CCCeehHHHHHHHHHHHHHHHHcc-
Confidence            34445555666777888764 46553  45666777788889999999999998 999999999888888877766542 


Q ss_pred             CCCCCCCCCccccccccccccchhhHHHHHHHHHHHHHhcCccccccccccccCCCCCCCchHHHhHHHHHHHHHHHHHh
Q 008231          123 IPSMRPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKAMIFFFNRFYFAISI  202 (573)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~i  202 (573)
                                               +.+.+++..++.|++.+...+...+.+.|.+|+++      |+++.++++...++
T Consensus       301 -------------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~g~~~~~~~~  349 (392)
T PRK12382        301 -------------------------TAWVALAGAALTGAGCSLIFPALGVEVVKRVPSQV------RGTALGGYAAFQDI  349 (392)
T ss_pred             -------------------------cHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCHHH------HHHHHHHHHHHHHH
Confidence                                     44566777888999988888888888889888887      99999999999999


Q ss_pred             hhHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHHHHh
Q 008231          203 GSLFAVIVLVYVQDNVGRGWGYGISAGTMVVAAAILLI  240 (573)
Q Consensus       203 g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~  240 (573)
                      |..++|.+.|++.+..||++.|.+.++..+++.+..+.
T Consensus       350 g~~ig~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~  387 (392)
T PRK12382        350 AYGVSGPLAGMLATSFGYPSVFLAGAISAVLGIIVTIL  387 (392)
T ss_pred             HHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999888777766655443

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.31  E-value=2.7e-11  Score=130.04  Aligned_cols=177  Identities=15%  Similarity=0.040  Sum_probs=123.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhHHHHHhhhcc-chhHHH-HHHHHHH
Q 008231           33 LAAGLILGTELSERICAMGISMNLVTYLVGDLHLSSAKSATIVTNFMGTLNLLGLLGGFLADAKL-GRYLTV-AIFASVT  110 (573)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~-Grr~~~-~~~~~~~  110 (573)
                      +.+|...+..++....+++...++|.|+++..|++..+++.+...+.++..++.+++|+++||+. |||+.. .....+.
T Consensus       253 ~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~  332 (452)
T PRK11273        253 KLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLV  332 (452)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHH
Confidence            45777777777777788888899999999999999999999999999999999999999999971 334332 2222333


Q ss_pred             HHHHHHHHhhccCCCCCCCCCccccccccccccchhhHHHHHHHHHHHHHhcCccccccccccccCCCCCCCchHHHhHH
Q 008231          111 ALVVGLLTSATSIPSMRPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKAMI  190 (573)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~  190 (573)
                      .++.++..+...                        .+.....+..++.|.+..........+..|.+|++.      |+
T Consensus       333 ~~~~~~~~~~~~------------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~g  382 (452)
T PRK11273        333 TIATIVYWLNPA------------------------GNPTVDMACMIVIGFLIYGPVMLIGLHALELAPKKA------AG  382 (452)
T ss_pred             HHHHHHHHHhcc------------------------cChHHHHHHHHHHHHHHHhHHHHHHHHHHHHcChhh------hh
Confidence            333333222110                        122233334444444322222223345679999988      99


Q ss_pred             HHHHHHHHHHHhhhHH-HHHHhhhhhcccchhHHHHHHHHHHHHHHHHHH
Q 008231          191 FFFNRFYFAISIGSLF-AVIVLVYVQDNVGRGWGYGISAGTMVVAAAILL  239 (573)
Q Consensus       191 ~~~~~~~~~~~ig~~~-~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~  239 (573)
                      ++.|+.+...++|+.+ +|.+.|++.+..||+..|++.++.++++.+...
T Consensus       383 ~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g~~~~f~~~~~~~~~~~~~~~  432 (452)
T PRK11273        383 TAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLI  432 (452)
T ss_pred             hHHHHHHHHHHHHHHHhhhhhHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence            9999999888888654 799999999999999999877776666655433

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.29  E-value=8.7e-11  Score=123.17  Aligned_cols=157  Identities=16%  Similarity=0.144  Sum_probs=122.0

Q ss_pred             HHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHhhccC
Q 008231           44 SERICAMGISMNLVTYLVGDLHLSSAKSATIVTNFMGTLNLLGLLGGFLADAKLGRYLTVAIFASVTALVVGLLTSATSI  123 (573)
Q Consensus        44 ~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~  123 (573)
                      .....+.....++|.|+++ .|.+..+.+++.+...+...++.++.|+++||+ |+|+++..+..+..++..... .   
T Consensus       211 ~~~~~~~~~~~~lp~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-~~~~~l~~~~~~~~~~~~~~~-~---  284 (381)
T PRK03633        211 ISGIVLGSLYGLMPLYLNH-QGMSDASIGFWMALLVSAGILGQWPIGRLADRF-GRLLVLRVQVFVVILGSIAML-S---  284 (381)
T ss_pred             HHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHc-CcHHHHHHHHHHHHHHHHHHh-h---
Confidence            3333444455678888875 699999999999999999999999999999998 999999888777776654432 1   


Q ss_pred             CCCCCCCCccccccccccccchhhHHHHHHHHHHHHHhcCccccccccccccCCCCCCCchHHHhHHHHHHHHHHHHHhh
Q 008231          124 PSMRPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKAMIFFFNRFYFAISIG  203 (573)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig  203 (573)
                                              . ......+++.|++.+...|...+.+.|..|+++      ++...+.++...++|
T Consensus       285 ------------------------~-~~~~~~~~l~g~~~~~~~p~~~~~~~~~~~~~~------~~~~~~~~~~~~~lG  333 (381)
T PRK03633        285 ------------------------Q-AAMAPALFILGAAGFTLYPVAMAWACEKVEHHE------LVAMNQALLLSYTVG  333 (381)
T ss_pred             ------------------------h-HHHHHHHHHHHHHHHhHHHHHHHHHHccCCHHH------HHHHHHHHHHHHHHH
Confidence                                    0 123345566777666777888888889888766      777888888889999


Q ss_pred             hHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHH
Q 008231          204 SLFAVIVLVYVQDNVGRGWGYGISAGTMVVAAAI  237 (573)
Q Consensus       204 ~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~  237 (573)
                      ..+||.++|++.+.+||++.|.+.+...++..+.
T Consensus       334 ~~igp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~  367 (381)
T PRK03633        334 SLLGPSFTAMLMQNYSDNLLFIMIASVSFIYLLM  367 (381)
T ss_pred             HHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHH
Confidence            9999999999999999999998877666554433

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=99.28  E-value=6.3e-10  Score=113.01  Aligned_cols=362  Identities=15%  Similarity=0.059  Sum_probs=194.4

Q ss_pred             HHHHHHHhhhcCC---Cc----hhhhHHHHHHHHHHHHHHhHHHHHhhhccchhH-HHHHHHHHHHHHHHHHHhhccCCC
Q 008231           54 MNLVTYLVGDLHL---SS----AKSATIVTNFMGTLNLLGLLGGFLADAKLGRYL-TVAIFASVTALVVGLLTSATSIPS  125 (573)
Q Consensus        54 ~~l~~yl~~~~~~---s~----~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~-~~~~~~~~~~~~~~~~~~~~~~~~  125 (573)
                      .+.|+|+++..+-   +.    +-.+...++..+...+..|+-|.++|+. |+|| .+.....+..+.+.++.++.+   
T Consensus        36 ~ifply~~~~~~~~g~~~~~~~a~~gy~~aia~llia~LapiLG~iaD~~-g~Rk~~~~~f~~i~i~~~~~L~~i~~---  111 (438)
T COG2270          36 FIFPLYFTSVAGAGGVDPASSTAYWGYASAIAGLLIALLAPILGTIADYP-GPRKKFFGFFTAIGIISTFLLWFIPP---  111 (438)
T ss_pred             ehhHHHHHHHHhhcCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhccC-CCcchHHHHHHHHHHHHHHHHHHhCC---
Confidence            4567788766544   33    3456667788888999999999999998 6555 455556666677777776531   


Q ss_pred             CCCCCCccccccccccccchhhHHHHHHHHHHHHHhcCccccccccccccCCCCCCCchHHHhHHHHHHHHHHHHHhhhH
Q 008231          126 MRPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKAMIFFFNRFYFAISIGSL  205 (573)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~  205 (573)
                                          +...+...+...+..++.........+++.|..++++      .++..+.-+....+|+.
T Consensus       112 --------------------~s~~~~~l~~~il~~i~~~~s~Vfyds~L~~~~~k~~------~~riS~lg~~~gylgs~  165 (438)
T COG2270         112 --------------------GSYLLLLLLFLILASIGFEFSNVFYDSMLPRLTTKDN------MGRISGLGWALGYLGSV  165 (438)
T ss_pred             --------------------CchHHHHHHHHHHHHHhcchhheehhhHhhhhcCccc------cCcccccccccccccch
Confidence                                0245556666677888888888888999999999887      66666666666677776


Q ss_pred             HHHHHh--hhh-h---------------cccchhHHHHHHHHHHHHHHHHHHhcCccccccC-CCCCchhHHHHHHHHHH
Q 008231          206 FAVIVL--VYV-Q---------------DNVGRGWGYGISAGTMVVAAAILLIGTPWYRFKK-PRGSPLTVIWRVLLLAW  266 (573)
Q Consensus       206 ~~~~~~--~~l-~---------------~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  266 (573)
                      +.-++.  ..+ .               +...-|.++.+.++..++..+=.+...++..+.. +....+..-.+.+...+
T Consensus       166 i~li~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ri~~~l~A~W~li~~iPm~~~v~~~~~~~~~~~~~l~~g~k~L~~t~  245 (438)
T COG2270         166 ILLIFVVLGFALGQQTGITIILLGLPPADGEDVRITGLLAALWWLLFALPMILNVHDAEKISSPPPTALRNGFKELKSTF  245 (438)
T ss_pred             HHHHHHHHHHhcccccceeEEeeccCccccccchhHHHHHHHHHHHHHhHHHhcccccccccccchHHHHHHHHHHHHHH
Confidence            665543  111 1               1112345555555544433332222222211110 11111111111111111


Q ss_pred             hccCCCCCCCCCcchhcccccCCCCCccchhhhhhhhhhhhhhccccCCcccccchhhHHHHHHHHh-HHHHHHHHHHHH
Q 008231          267 KKRSHPYPDHPSLLNEYQNAKVPHTEKFKCLDKAAIIEDNAVANENKNNSWIVSTVTEVEEVKMVLK-LLPIWATCILFW  345 (573)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~  345 (573)
                      |+                                                        ...++.+.. ++..++..-...
T Consensus       246 k~--------------------------------------------------------i~~~~~i~~FLiA~~~~~DGv~  269 (438)
T COG2270         246 KE--------------------------------------------------------IRGRKNLVLFLIARFFYIDGVN  269 (438)
T ss_pred             HH--------------------------------------------------------HhcccchHHHHHHHHHHHhhHH
Confidence            10                                                        011111111 111111111111


Q ss_pred             HHhhcccchhhhhhhccccccccceecccccchhhHHHHHHHHHhhhhhhhhhhcccccccCCCchHHHHHHHHHHHHHH
Q 008231          346 TVYSQMTTFTVEQATFMNRKIGSFTVPSGSLSAFLFITILLFTSLNEKVFVPLARKITHSIQGMTSLQRVGTGLIFSVIA  425 (573)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~i~  425 (573)
                      ....... .+-....+++      ..+...+.....+..+++..+.+++-+|+..|           +.+..+++...+.
T Consensus       270 til~~~~-~fg~~~~gls------~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k-----------~vl~~~lvi~~~~  331 (438)
T COG2270         270 TILAMGG-VFGAADLGLS------STELLLIGIALSVVAALGAIIAGFLDERFGSK-----------PVLMIGLVILSIA  331 (438)
T ss_pred             HHHHHHH-HHHHHHcCcc------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc-----------eeehHHHHHHHHH
Confidence            1110000 0000000111      00111222233334444445555554444333           2256666665555


Q ss_pred             HHHHHHHHHHHHhhcccCCcccchhHHHHHHHHHHHHHHhhhhhhhheeecccCchhHHHHHHHHHHHHHHHHHHHHHHH
Q 008231          426 MIVSAVIEQQRRETSVQKHIQISAFWLVPQYFLVGAGEAFVYVGQLEFFIREGPERMKSMSTGLFLSAISMGMFVSSMLV  505 (573)
Q Consensus       426 ~i~~~~~~~~~~~~~~~~~~~~~~~~lv~~~~l~g~~~~~~~~~~~~~~~~~~p~~~rg~~~gi~~~~~~lg~~ig~~~~  505 (573)
                      .+.....+           ....+   .+...+.|...+......=+|..+.+|++..+...|++++....+.++||++.
T Consensus       332 ~~~~~~~~-----------~~~~f---~i~gll~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv  397 (438)
T COG2270         332 ALYLIFLE-----------GELDF---WILGLLVGTSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLV  397 (438)
T ss_pred             HHHHHHcc-----------ccHHH---HHHHHHHHHhcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHH
Confidence            44443331           11222   33346677888888888888999999999999999999999999999999999


Q ss_pred             HHHhhhhccCccccccccchhhHHHHHHHHHHHHHHHHH
Q 008231          506 SIVDKITNKHWLRSNLNKGKLNNFYWLLAVLGLLNFMVF  544 (573)
Q Consensus       506 ~~i~~~~~~~w~~~~~~~~~~~~~~~~~a~~~~l~~~~~  544 (573)
                      +.+-+.++           +....+..+.++..++.+++
T Consensus       398 ~v~t~iTg-----------~~r~g~~~i~vll~iGl~~L  425 (438)
T COG2270         398 AVITQITG-----------SSRAGVLSIIVLLLIGLLLL  425 (438)
T ss_pred             HHHHHHhc-----------chhhHHHHHHHHHHhhHhhE
Confidence            99987653           22234444555555554443

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=99.28  E-value=7.8e-10  Score=117.60  Aligned_cols=163  Identities=17%  Similarity=0.087  Sum_probs=118.6

Q ss_pred             HHHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhHHHHHhhhc--cc--hhHHHHHHHHHHHHHHHHHHhhccCCCCCCCC
Q 008231           55 NLVTYLVGDLHLSSAKSATIVTNFMGTLNLLGLLGGFLADAK--LG--RYLTVAIFASVTALVVGLLTSATSIPSMRPPQ  130 (573)
Q Consensus        55 ~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~--~G--rr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (573)
                      ....|+++++|+++.+.....+...+...+ .++.|.++|-+  .|  ||+-++++.++.+++...++......      
T Consensus        11 ~~~~~l~~~l~ls~~~~~~~~~~~~lPw~~-Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~------   83 (433)
T PF03092_consen   11 AIYPFLKDDLGLSPAQLQRLSSLASLPWSI-KPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASE------   83 (433)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHhCchHH-hhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhccccc------
Confidence            345688999999999998877777666554 46779999995  23  44455566666655555555432111      


Q ss_pred             CccccccccccccchhhHHHHHHHHHHHHHhcCccccccccccccCCCCCCCchHHHhHHHHHHHHHHHHHhhhHHHHHH
Q 008231          131 CDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKAMIFFFNRFYFAISIGSLFAVIV  210 (573)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~~  210 (573)
                                      .+.....+..++..+|.+.......+++.|...++..+    |+...+..+....+|++++..+
T Consensus        84 ----------------~s~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~----~g~lqS~~~~~~~~G~lv~~~l  143 (433)
T PF03092_consen   84 ----------------SSAAIAVVLLFLASFGYAFADVAADALVVELARREPES----RGDLQSFVWGVRSVGSLVGSLL  143 (433)
T ss_pred             ----------------chhhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCch----hHHHHHHHHHHHHHHHHHHHHh
Confidence                            23345556667788999999999999999988665432    7888888888999999999999


Q ss_pred             hhhhhcccchhHHHHHHHHHHHHHHHHHHhcCcc
Q 008231          211 LVYVQDNVGRGWGYGISAGTMVVAAAILLIGTPW  244 (573)
Q Consensus       211 ~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~  244 (573)
                      +|.+.+..+++..|.+.++..++..+..++..++
T Consensus       144 ~G~l~~~~~~~~~f~i~~~~~~l~~~~~~~~~~e  177 (433)
T PF03092_consen  144 SGPLLDSFGPQGVFLISAALPLLMLIVALFLLEE  177 (433)
T ss_pred             hhhhhhcCCCeEEehHHHHHHHHHHHHHHHhhhh
Confidence            9999999999999988877666655544444443

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.27  E-value=5.5e-11  Score=127.71  Aligned_cols=171  Identities=12%  Similarity=-0.022  Sum_probs=135.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhHHHHHhhhc-cchhHHHHHHH--HH
Q 008231           33 LAAGLILGTELSERICAMGISMNLVTYLVGDLHLSSAKSATIVTNFMGTLNLLGLLGGFLADAK-LGRYLTVAIFA--SV  109 (573)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~-~Grr~~~~~~~--~~  109 (573)
                      +.++..+...++..++++....+++.|++ ++|++..+.+++.+...++..++.+++|+++||. .++|+...++.  .+
T Consensus       241 ~~~~~~~~~~~l~~~~~~~~~~~l~~~~~-~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~  319 (455)
T TIGR00892       241 RGFLVYLSGNVIMFLGFFAPIIFLVPYAK-DKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLF  319 (455)
T ss_pred             chHHHHHHHHHHHHHHccchHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHH
Confidence            45666677777777888888888999986 5799999999999999999999999999999983 13444443333  33


Q ss_pred             HHHHHHHHHhhccCCCCCCCCCccccccccccccchhhHHHHHHHHHHHHHhcCccccccccccccCCCCCCCchHHHhH
Q 008231          110 TALVVGLLTSATSIPSMRPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKAM  189 (573)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~r  189 (573)
                      .+++.+++.+.                          ++.+.+++.+++.|++.+...+...+++.|.+|+++      +
T Consensus       320 ~~l~~ll~~~~--------------------------~~~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~------~  367 (455)
T TIGR00892       320 NGLTHLLCALA--------------------------GDYTGLVIYCIFFGLSFGSVGALLFEVLMDLVGAQR------F  367 (455)
T ss_pred             HHHHHHHHHHh--------------------------chHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhHHH------H
Confidence            33333344333                          255677788899999999998999999999999887      9


Q ss_pred             HHHHHHHHHHHHhhhHHHHHHhhhhhccc-chhHHHHHHHHHHHHHHH
Q 008231          190 IFFFNRFYFAISIGSLFAVIVLVYVQDNV-GRGWGYGISAGTMVVAAA  236 (573)
Q Consensus       190 ~~~~~~~~~~~~ig~~~~~~~~~~l~~~~-g~~~~f~~~~~~~~~~~~  236 (573)
                      ++.+++++...++|..+||.++|++.+.. +|++.|++.++..+++.+
T Consensus       368 g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~~~~li~~~  415 (455)
T TIGR00892       368 SSAVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYASGSIVVSAGL  415 (455)
T ss_pred             hhHHhHHHHHHHHHHHccccceeeeehhcCCcchHHHHhhHHHHHHHH
Confidence            99999999999999999999999999877 499999888776655544

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.27  E-value=6.1e-11  Score=124.68  Aligned_cols=159  Identities=21%  Similarity=0.117  Sum_probs=123.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHH
Q 008231           36 GLILGTELSERICAMGISMNLVTYLVGDLHLSSAKSATIVTNFMGTLNLLGLLGGFLADAKLGRYLTVAIFASVTALVVG  115 (573)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~  115 (573)
                      ..+.....+.....+....++|.|+.+++|++..+.+++.+...++..++.++.|+++||+ |||+.+.++..+..+...
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~  319 (405)
T TIGR00891       241 VYLVVLVLFANLYSHPIQDLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWL-GRRKAYVCSLLAGQLLII  319 (405)
T ss_pred             HHHHHHHHHHHHHHhhhhhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchhhhHHHHHHHHHHHH
Confidence            3333444444555556777889999999999999999999999999999999999999998 999998888765533322


Q ss_pred             HHHhhccCCCCCCCCCccccccccccccchhhHHHHHHHHHHHHHhcCccccccccccccCCCCCCCchHHHhHHHHHHH
Q 008231          116 LLTSATSIPSMRPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKAMIFFFNR  195 (573)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  195 (573)
                      ......                         .+.+.+.++.++.+.+.+...+...+++.|.+|+++      |++++|+
T Consensus       320 ~~~~~~-------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~g~  368 (405)
T TIGR00891       320 PVFAIG-------------------------ANVAVLGLGLFFQQMLVQGIWGILPKHLGEYFPTDQ------RAAGLGF  368 (405)
T ss_pred             HHHHhC-------------------------CchHHHHHHHHHHHHHHccchhhHHHHHhhhCCcch------hHHHhhH
Confidence            221111                         133455555566666666667778889999999988      9999999


Q ss_pred             HHHHHHhhhHHHHHHhhhhhcccc-hhHHHHH
Q 008231          196 FYFAISIGSLFAVIVLVYVQDNVG-RGWGYGI  226 (573)
Q Consensus       196 ~~~~~~ig~~~~~~~~~~l~~~~g-~~~~f~~  226 (573)
                      .+...++|..++|++.|++.+..| |+..+..
T Consensus       369 ~~~~~~~g~~~g~~~~g~l~~~~g~~~~~~~~  400 (405)
T TIGR00891       369 TYQLGNLGGALAPIIGALLAQRLDEYGTALAS  400 (405)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccccchhHHh
Confidence            999999999999999999999888 8776654

>TIGR00897 2A0118 polyol permease family

Probab=99.27  E-value=1.5e-10  Score=122.30  Aligned_cols=177  Identities=15%  Similarity=0.048  Sum_probs=129.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHH-HHHHHHH
Q 008231           33 LAAGLILGTELSERICAMGISMNLVTYLVGDLHLSSAKSATIVTNFMGTLNLLGLLGGFLADAKLGRYLTVA-IFASVTA  111 (573)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~-~~~~~~~  111 (573)
                      |.++...+..++....+++...++|.|++ ++|++..+.+.+.+.+.++..++.++.|+++||+ |||+.+. .+....+
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~-~~~~~~~~~~~l~~~  299 (402)
T TIGR00897       222 PNVLLGGMVRIINTIGLFGFAVFLPMFVA-ELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKL-GWMNTVRWFGGVGCG  299 (402)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhh-cchhHHHHHHHHHHH
Confidence            45566667777777888888899998885 5899999999999999999999999999999998 9888764 3333333


Q ss_pred             HHHHHHHhhccCCCCCCCCCccccccccccccchhhHHHHHHHHHHHHHhcCccccccccccccCCCCCCCchHHHhHHH
Q 008231          112 LVVGLLTSATSIPSMRPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKAMIF  191 (573)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~  191 (573)
                      ++...+.......                     .++.+..++..++.|++.+...+. ...+.|..| ++      |++
T Consensus       300 ~~~~~l~~~~~~~---------------------~~~~~~~~~~~~~~G~~~~~~~~~-~~~~~~~~~-~~------~g~  350 (402)
T TIGR00897       300 IFTLALYYIPQHF---------------------GHSFAVALIIAIALGIFLAGYVPL-AAVFPTLAP-KH------KGA  350 (402)
T ss_pred             HHHHHHHHHHHcc---------------------CCcHHHHHHHHHHHHHHHHHHHHH-HHHHHhhCc-ch------hHH
Confidence            3332322211000                     013445556677777777765443 455666544 46      999


Q ss_pred             HHHHHHHHHHhhhHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHHHHh
Q 008231          192 FFNRFYFAISIGSLFAVIVLVYVQDNVGRGWGYGISAGTMVVAAAILLI  240 (573)
Q Consensus       192 ~~~~~~~~~~ig~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~  240 (573)
                      ++|+.+...++|..++|.+.+++.+..||..+|++.++..+++.+...+
T Consensus       351 ~~g~~~~~~~lg~~~gp~i~g~l~~~~g~~~~~~~~a~~~~i~~~~~~~  399 (402)
T TIGR00897       351 AMSVLNLSAGLSAFLAPAIAVLFIGFFGAIGVVWIFAALYVVSAFLTAF  399 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999888776666554433

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.24  E-value=3.2e-10  Score=116.10  Aligned_cols=179  Identities=16%  Similarity=0.038  Sum_probs=144.4

Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHH
Q 008231           31 GWLAAGLILGTELSERICAMGISMNLVTYLVGDLHLSSAKSATIVTNFMGTLNLLGLLGGFLADAKLGRYLTVAIFASVT  110 (573)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~  110 (573)
                      +.+.++......++...++|+..+++.+++++..|+|....+++.-.|.++..++..++|+++||  +.|+++.....+.
T Consensus       209 ~~p~v~~~l~~t~l~~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr--~~~~~l~~~~~l~  286 (394)
T COG2814         209 RRPGVLLGLLATFLFMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR--GPRRALIAALLLL  286 (394)
T ss_pred             cCchHHHHHHHHHHHHcchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc--cchhHHHHHHHHH
Confidence            33567888888888889999999999999999999999999999999999999999999999999  6888888887777


Q ss_pred             HHHHHHHHhhccCCCCCCCCCccccccccccccchhhHHHHHHHHHHHHHhcCccccccccccccCCCCCCCchHHHhHH
Q 008231          111 ALVVGLLTSATSIPSMRPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKAMI  190 (573)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~  190 (573)
                      ++....+.+..                         .+....++..++.|+...........-+++. -++.      +.
T Consensus       287 a~~~l~l~~~~-------------------------~~~~~~~~~~~~wg~a~~~~~~~~~~~~a~~-~p~~------~~  334 (394)
T COG2814         287 ALALLALTFTG-------------------------ASPALALALLFLWGFAFSPALQGLQTRLARL-APDA------AD  334 (394)
T ss_pred             HHHHHHHHHhc-------------------------chHHHHHHHHHHHHHHhhhhhhHHHHHhccc-CCCc------hH
Confidence            77776666643                         2444555555666665555544444555552 2445      89


Q ss_pred             HHHHHHHHHHHhhhHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHHHHhcCc
Q 008231          191 FFFNRFYFAISIGSLFAVIVLVYVQDNVGRGWGYGISAGTMVVAAAILLIGTP  243 (573)
Q Consensus       191 ~~~~~~~~~~~ig~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~  243 (573)
                      .+.+++....|+|..+|..++|.+.+.+|+....++.++..++++++.+...+
T Consensus       335 ~a~sl~~aa~nlgia~GA~lGG~v~~~~g~~~~~~~~a~l~~~a~~~~~~~~~  387 (394)
T COG2814         335 LAGSLNVAAFNLGIALGAALGGLVLDALGYAATGWVGAALLLLALLLALLSAR  387 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999888887776555433

>PRK15075 citrate-proton symporter; Provisional

Probab=99.23  E-value=1.1e-10  Score=124.76  Aligned_cols=153  Identities=17%  Similarity=0.085  Sum_probs=109.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHH-HH
Q 008231           39 LGTELSERICAMGISMNLVTYLVGDLHLSSAKSATIVTNFMGTLNLLGLLGGFLADAKLGRYLTVAIFASVTALVVG-LL  117 (573)
Q Consensus        39 ~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~-~~  117 (573)
                      +...++....++.+..++|.|+++.+|++..+.++....+.++..++.+++|+++||+ |||+++.++..+.++... ..
T Consensus       244 ~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~-g~r~~~~~~~~~~~~~~~~~~  322 (434)
T PRK15075        244 MLMVAMTTVSFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRI-GRRPVLIAFTVLAILTAYPAL  322 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHHH
Confidence            3444455667778888999999988999999999888888899999999999999998 999988776544333221 11


Q ss_pred             HhhccCCCCCCCCCccccccccccccchhhHHHHHHHHHHHHHhcCccccccccccccCCCCCCCchHHHhHHHHHHHHH
Q 008231          118 TSATSIPSMRPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKAMIFFFNRFY  197 (573)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~  197 (573)
                      ......                       .+.....+..++.+++.+...+....++.|.+|++.      |+.++++.+
T Consensus       323 ~~~~~~-----------------------~~~~~~~~~~~~~~~~~g~~~~~~~~~~~e~~p~~~------rg~~~g~~~  373 (434)
T PRK15075        323 SWLVAA-----------------------PSFARMLAVELWLSFLYGSYNGAMVVALTEVMPAEV------RTAGFSLAY  373 (434)
T ss_pred             HHHHcC-----------------------CchHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCCc------cchheeHHH
Confidence            111100                       122223333444555566666666678899999998      999999854


Q ss_pred             H-HHHhhhHHHHHHhhhhhcccchh
Q 008231          198 F-AISIGSLFAVIVLVYVQDNVGRG  221 (573)
Q Consensus       198 ~-~~~ig~~~~~~~~~~l~~~~g~~  221 (573)
                      . +..+++.++|.+.+++.+..|+.
T Consensus       374 ~~~~~~~g~~~p~~~g~i~~~~g~~  398 (434)
T PRK15075        374 SLATAIFGGFTPAISTWLIHVTGDK  398 (434)
T ss_pred             HHHHHHHhhhHHHHHHHHHHhcCCc
Confidence            4 44456788999999999988854

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.22  E-value=1.9e-10  Score=122.73  Aligned_cols=175  Identities=17%  Similarity=0.104  Sum_probs=112.3

Q ss_pred             HHHHHHHHH-HHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHH
Q 008231           35 AGLILGTEL-SERICAMGISMNLVTYLVGDLHLSSAKSATIVTNFMGTLNLLGLLGGFLADAKLGRYLTVAIFASVTALV  113 (573)
Q Consensus        35 ~~~~~~~~~-~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~  113 (573)
                      .+......+ .....+|++..++|.|+.+++|++..+.+...++..+...++.++.|+++||+ |||+.+.++..+.++.
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~-grr~~~~~~~~~~~~~  322 (432)
T PRK10406        244 AFIMVLGFTAAGSLCFYTFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKI-GRRTSMLCFGSLAALF  322 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchHHHHHHHHHHHHH
Confidence            344433333 34677888999999999999999999999988888888889999999999998 9999887765544333


Q ss_pred             HHHHHh-hccCCCCCCCCCccccccccccccchhhHHHHHHHHHHHHHhcCccccccccccccCCCCCCCchHHHhHHHH
Q 008231          114 VGLLTS-ATSIPSMRPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKAMIFF  192 (573)
Q Consensus       114 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~  192 (573)
                      ...... ... .                      .+....+....+...+.+...+....+.+|.+|++.      |+++
T Consensus       323 ~~~~~~~~~~-~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~fp~~~------r~t~  373 (432)
T PRK10406        323 TVPILSALQN-V----------------------SSPYAAFGLVMCALLIVSFYTSISGILKAEMFPAQV------RALG  373 (432)
T ss_pred             HHHHHHHHHc-C----------------------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCc------cchh
Confidence            222211 110 0                      011111111122222223333456678899999999      9999


Q ss_pred             HHHHHHHHH-hhhHHHHHHhhhhhcccc-hhHHHHHHHHHHHHHHHHHHh
Q 008231          193 FNRFYFAIS-IGSLFAVIVLVYVQDNVG-RGWGYGISAGTMVVAAAILLI  240 (573)
Q Consensus       193 ~~~~~~~~~-ig~~~~~~~~~~l~~~~g-~~~~f~~~~~~~~~~~~~~~~  240 (573)
                      +|+.+...+ +++...|.+.+++. ..| |...+++.++..+++.+..++
T Consensus       374 ~g~~~~~g~~~~g~~~p~~~~~l~-~~g~~~~~~~~~~~~~~i~~~~~~~  422 (432)
T PRK10406        374 VGLSYAVANALFGGSAEYVALSLK-SIGMETAFFWYVTLMAVVAFLVSLM  422 (432)
T ss_pred             hhHHHHHHHHHHHhHHHHHHHHHH-HhCCCcHHHHHHHHHHHHHHHHHHH
Confidence            999776544 44555888888664 445 555565555555555544443

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.22  E-value=3.4e-10  Score=118.76  Aligned_cols=166  Identities=10%  Similarity=-0.076  Sum_probs=130.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHH
Q 008231           33 LAAGLILGTELSERICAMGISMNLVTYLVGDLHLSSAKSATIVTNFMGTLNLLGLLGGFLADAKLGRYLTVAIFASVTAL  112 (573)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~  112 (573)
                      |.++..+...++....+....++++.|++ +.|.+..+.+.+.+...+...+..++.|++.||+ |+|+.+..+..+.++
T Consensus       205 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~l~~~~~~~~~  282 (382)
T PRK11128        205 PTVWRFLLCVSLLQGSHAAYYGFSAIYWQ-AAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRW-SARDLLLLSAICGVV  282 (382)
T ss_pred             hhHHHHHHHHHHHHHHhHhHHHHHHHHHH-HCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHHHHHHHHHHHHHH
Confidence            45566666666666666667788888986 5899999999999988888899999999999998 999999999888888


Q ss_pred             HHHHHHhhccCCCCCCCCCccccccccccccchhhHHHHHHHHHHHHHhcCccccccccccccCCCCCCCchHHHhHHHH
Q 008231          113 VVGLLTSATSIPSMRPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKAMIFF  192 (573)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~  192 (573)
                      +..+++.+                          ++.+.+++..++.|++.+...+....++.+. ++++      +++.
T Consensus       283 ~~~~~~~~--------------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~-~~~~------~~~~  329 (382)
T PRK11128        283 RWGLMGST--------------------------TALPWLIVIQILHCGTFTVCHLAAMRYIAAR-PGSE------VIRL  329 (382)
T ss_pred             HHHHHHhh--------------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHhh------hHHH
Confidence            77666654                          3567778888999999888888888887775 5444      7788


Q ss_pred             HHHHH-HHHHhhhHHHHHHhhhhhcccchhHHHHHHHHHHHHH
Q 008231          193 FNRFY-FAISIGSLFAVIVLVYVQDNVGRGWGYGISAGTMVVA  234 (573)
Q Consensus       193 ~~~~~-~~~~ig~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~  234 (573)
                      .+.++ ....+|..+||.++|++.+.+|+ ..|+..++..+++
T Consensus       330 ~~~~~~~~~~~g~~ig~~i~G~l~~~~g~-~~~~~~~~~~~~~  371 (382)
T PRK11128        330 QALYSALAMGGSIAIMTVLSGFLYQHLGA-GVFWVMALVALPA  371 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHH
Confidence            88765 55678889999999999999887 4565555544443

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.21  E-value=3.1e-10  Score=121.77  Aligned_cols=171  Identities=14%  Similarity=0.000  Sum_probs=120.5

Q ss_pred             HHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHhhccCCCCCCCC
Q 008231           51 GISMNLVTYLVGDLHLSSAKSATIVTNFMGTLNLLGLLGGFLADAKLGRYLTVAIFASVTALVVGLLTSATSIPSMRPPQ  130 (573)
Q Consensus        51 ~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (573)
                      .+..+. +++.+++|++..+.++......+...++.+++|+++||+ |||+.+.++..+.+++..++.+.......    
T Consensus       302 ~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----  375 (481)
T TIGR00879       302 AIMYYS-PTIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRF-GRRPLLLIGAAGMAICLFVLGILGASFVT----  375 (481)
T ss_pred             ehHHHH-HHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHHHHHhhcccC----
Confidence            333344 445567899998888999999999999999999999998 99999999988877777666632100000    


Q ss_pred             CccccccccccccchhhHHHHHHHHHHHHHhcCccccccccccccCCCCCCCchHHHhHHHHHHHHHHHHHhhhHHHHHH
Q 008231          131 CDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKAMIFFFNRFYFAISIGSLFAVIV  210 (573)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~~  210 (573)
                             +.    +.......+....+..+.......+....+..|.+|+++      |+++.++.+...++|.+++|.+
T Consensus       376 -------~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~------~~~~~~~~~~~~~lg~~i~~~~  438 (481)
T TIGR00879       376 -------GS----SKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSL------RPKGISIAVAANWLANFIVGFL  438 (481)
T ss_pred             -------Cc----ccchhHHHHHHHHHHHHHHHccccCeehhhhhccCChHH------HHHHHHHHHHHHHHHHHHHHHH
Confidence                   00    000012222222222222223334666777899999888      9999999999999999999999


Q ss_pred             hhhhhcccchhHHHHHHHHHHHHHHHHHHhcCcc
Q 008231          211 LVYVQDNVGRGWGYGISAGTMVVAAAILLIGTPW  244 (573)
Q Consensus       211 ~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~  244 (573)
                      .+++.+..||++.|++.+++++++.+...+..++
T Consensus       439 ~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~~~~  472 (481)
T TIGR00879       439 FPTMLESIGVGGVFIFFGGLNVLGLIFVYFFLPE  472 (481)
T ss_pred             HHHHHHhcCccceehhHHHHHHHHHHHHheeccc
Confidence            9999988899999988777766666655554443

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=99.21  E-value=9.5e-09  Score=109.01  Aligned_cols=341  Identities=15%  Similarity=0.079  Sum_probs=199.0

Q ss_pred             HHHHHHHhhhcCCCch-hhhHHHHHH----HHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHhhccCCCCCC
Q 008231           54 MNLVTYLVGDLHLSSA-KSATIVTNF----MGTLNLLGLLGGFLADAKLGRYLTVAIFASVTALVVGLLTSATSIPSMRP  128 (573)
Q Consensus        54 ~~l~~yl~~~~~~s~~-~~~~~~~~~----~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (573)
                      .....+.....+.+.. ..+......    .+...+..+..|.++||| |||..+........+......+.        
T Consensus        42 ~~~~~~~~ct~~~~~~~~~~~~~~~~~~~~~~~~~i~s~~iG~lSD~~-grk~~L~~~~~~~~l~~~~~~~~--------  112 (463)
T KOG2816|consen   42 TNVILYLACTFGDDYQLENGLLLGVKQVTAGLLTLISSPLIGALSDRY-GRKVVLLLPLFGTILPALCLLFQ--------  112 (463)
T ss_pred             hhhhhhhhcccccCccchhhhhhhHHHHhhHHHHHHHHhhhHHhhhhh-hhhhhHHHHHHHHHHhHHHHHHH--------
Confidence            4445555555544433 223333333    567788899999999999 99999999998888887777763        


Q ss_pred             CCCccccccccccccchhhHHHHHHHHHHHHHhc--CccccccccccccCCCCCCCchHHHhHHHHHHHHHHHHHhhhHH
Q 008231          129 PQCDDYRRKHHQCIEANGKQLAMLYAALYTIALG--GGGIKSNVSGFGSDQFDTSDPKEEKAMIFFFNRFYFAISIGSLF  206 (573)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g--~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~  206 (573)
                                         . +.+++   +.++.  .+...+...++++|....++      |...+++.+.....+..+
T Consensus       113 -------------------~-~~~~~---~~~l~g~~~~~~s~~~a~vadis~~~~------R~~~~gll~~~~~~~~~~  163 (463)
T KOG2816|consen  113 -------------------G-YWFFL---LLGLSGGFSAIFSVGFAYVADISSEEE------RSSSIGLLSGTFGAGLVI  163 (463)
T ss_pred             -------------------H-HHHhh---hcccccchhhhhhhhhhheeeccchhH------HHHHHHHHHHHHHHHHhH
Confidence                               2 22222   33333  23455777889999999887      999999999999999999


Q ss_pred             HHHHhhhhhcccchhHHHHHHHHHHHHHHHHHHhcCccccccCCCCC-chhHHHHHHHHHHhccCCCCCCCCCcchhccc
Q 008231          207 AVIVLVYVQDNVGRGWGYGISAGTMVVAAAILLIGTPWYRFKKPRGS-PLTVIWRVLLLAWKKRSHPYPDHPSLLNEYQN  285 (573)
Q Consensus       207 ~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  285 (573)
                      +|.+++.+....|.-.+|.++.+..++..+...+..|+...++.++. +..                 +..         
T Consensus       164 ~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~~~~~~~~-----------------~~~---------  217 (463)
T KOG2816|consen  164 GPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPESLQEKERSDATLR-----------------ELT---------  217 (463)
T ss_pred             HHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhccccccCcccccccccc-----------------ccC---------
Confidence            99999999999999999999998888887776666666544332210 000                 000         


Q ss_pred             ccCCCCCccchhhhhhhhhhhhhhccccCCcccccchhhHHHHHHHHhHHHHHHHHHHHHHHhhccc---chhhhhhhcc
Q 008231          286 AKVPHTEKFKCLDKAAIIEDNAVANENKNNSWIVSTVTEVEEVKMVLKLLPIWATCILFWTVYSQMT---TFTVEQATFM  362 (573)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~  362 (573)
                          .++... .              +...+++....  ....|..+.+...  .............   .++.......
T Consensus       218 ----~~~~~~-~--------------~~~~~~~~~~~--~~~~r~~l~l~l~--~~~~~~~~~~~~~~~~~~yl~~~f~w  274 (463)
T KOG2816|consen  218 ----PGSLDS-S--------------HVADAFQSLTK--VGPDRLLLLLLLV--AFLSSLPEAGGASDVLLLYLKAKFGW  274 (463)
T ss_pred             ----CCcccc-h--------------hhhhhhhhhcc--cCCCccchHHHHH--HHHHHHHHhcCceeEEEEEEeeecCc
Confidence                000000 0              00001100000  1111222221111  1111111111111   1111111111


Q ss_pred             ccccccceecccccchhhHHHHHHHHHhhhhhhhhhhcccccccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 008231          363 NRKIGSFTVPSGSLSAFLFITILLFTSLNEKVFVPLARKITHSIQGMTSLQRVGTGLIFSVIAMIVSAVIEQQRRETSVQ  442 (573)
Q Consensus       363 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~i~~i~~~~~~~~~~~~~~~  442 (573)
                      +...  +..-....+....+..++..|+.....   ..|           +.+..|+..-.+.....++..         
T Consensus       275 ~~~~--~s~~~~~~~~~~~i~~l~~~~~l~~~l---~~~-----------~~i~lGl~~~~~~~~~~af~~---------  329 (463)
T KOG2816|consen  275 NKKE--FSDLLSLVSILGIISQLLLLPLLSSIL---GEK-----------RLISLGLLSEFLQLLLFAFAT---------  329 (463)
T ss_pred             CHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH---hhh-----------hHhhHHHHHHHHHHHHHHHhc---------
Confidence            1110  000011112223333444443332221   111           137888888888888888762         


Q ss_pred             CCcccchhHHHHHHHHHHHHHHhhhhhhhheeecccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 008231          443 KHIQISAFWLVPQYFLVGAGEAFVYVGQLEFFIREGPERMKSMSTGLFLSAISMGMFVSSMLVSIVDKIT  512 (573)
Q Consensus       443 ~~~~~~~~~lv~~~~l~g~~~~~~~~~~~~~~~~~~p~~~rg~~~gi~~~~~~lg~~ig~~~~~~i~~~~  512 (573)
                           ..| +...............|...+.++....++.+|+.+++......+.+.+++.+.+.+...+
T Consensus       330 -----~~w-~~~~~~v~~~~~~~~~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~~~~i~~~t  393 (463)
T KOG2816|consen  330 -----ETW-MMFAAGVVVALAGIVFPAIRAFASILVSPEEQGKVFGIISGIEGLSGVVSPALYGNIFALT  393 (463)
T ss_pred             -----cch-hhhHHHHHHHhhcchhHHHHhHHHhhcccccccchhhHHHHHHHHhhhhhHHHHHHHHHHH
Confidence                 222 2223334444455667888899999999999999999999999999999999999887654

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.21  E-value=3.4e-10  Score=122.67  Aligned_cols=176  Identities=16%  Similarity=0.087  Sum_probs=126.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHH-HHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHH
Q 008231           36 GLILGTELSERICAMGISMNLVTYLVGDLHLSSAKSATIVT-NFMGTLNLLGLLGGFLADAKLGRYLTVAIFASVTALVV  114 (573)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~-~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~  114 (573)
                      +......++.....+....+.++|+.+++|+|..+.+++.. ...++..++.+++|+++||+ |||+.+.++..+.+++.
T Consensus       225 ~~~ll~~~l~~~~~~~~~~~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~-g~~~~l~i~~~l~~l~~  303 (491)
T PRK11010        225 WLILLLIVLYKLGDAFAMSLTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRL-SLFRALMIFGILQGVSN  303 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHH
Confidence            33333334445555566677888988889999999999875 55678999999999999998 99988877666555544


Q ss_pred             HHHHh-hccCCCCCCCCCccccccccccccchhhHHHHHHHHHHHHHhcCccccccccccccCCCCCCCchHHHhHHHHH
Q 008231          115 GLLTS-ATSIPSMRPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKAMIFFF  193 (573)
Q Consensus       115 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  193 (573)
                      .+... +.. .                      .+...+.+..++..++.+...+...++..+..+++.      +++.+
T Consensus       304 l~~~~l~~~-~----------------------~~~~~l~~~~~l~~~~~g~~~~~~~a~~~~l~~~~~------~~t~~  354 (491)
T PRK11010        304 AGYWLLSIT-D----------------------KNLYSMGAAVFFENLCGGMGTAAFVALLMTLCNKSF------SATQF  354 (491)
T ss_pred             HHHHHHHhc-c----------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC------cHHHH
Confidence            33221 110 0                      123333444455444445444556788888888888      88899


Q ss_pred             HHHHHHHHhhhHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHHHHhc
Q 008231          194 NRFYFAISIGSLFAVIVLVYVQDNVGRGWGYGISAGTMVVAAAILLIG  241 (573)
Q Consensus       194 ~~~~~~~~ig~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~  241 (573)
                      ++.+...++|..+++.+.|++.+..||+..|.+.+++.+++.+.....
T Consensus       355 gl~~s~~~lg~~~~~~~~G~l~~~~G~~~~f~~~~~~~l~~l~~~~~~  402 (491)
T PRK11010        355 ALLSALSAVGRVYVGPVAGWFVEAHGWPTFYLFSVAAAVPGLLLLLVC  402 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999988888777776655443

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.21  E-value=8.2e-11  Score=122.25  Aligned_cols=162  Identities=15%  Similarity=0.043  Sum_probs=118.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHH-H-H
Q 008231           33 LAAGLILGTELSERICAMGISMNLVTYLVGDLHLSSAKSATIVTNFMGTLNLLGLLGGFLADAKLGRYLTVAIFAS-V-T  110 (573)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~-~-~  110 (573)
                      +.++.+.+..++.....+++..+.+.|+.+.+|++..+.+.+.+.+.+...++.++.|+++||+.+||+....... . .
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~  295 (379)
T TIGR00881       216 KVLWYISLGYVFVYVVRTGILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALI  295 (379)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence            4566677777777777778888999999999999999999999999999999999999999985234433222211 1 1


Q ss_pred             HHHHHHHHhhccCCCCCCCCCccccccccccccchhhHHHHHHHHHHHHHhcCccccccccccccCCCCCCCchHHHhHH
Q 008231          111 ALVVGLLTSATSIPSMRPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKAMI  190 (573)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~  190 (573)
                      .++.......   +                     ..+....++..++.|.......+....+..|.+|++.      |+
T Consensus       296 ~~~~~~~~~~---~---------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g  345 (379)
T TIGR00881       296 IVSLLVYWLN---P---------------------AANPLMDLICLFALGFLVYGPQMLIGVIASELAPKKA------AG  345 (379)
T ss_pred             HHHHHHHhcC---c---------------------chhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCcch------hH
Confidence            1221221111   0                     0133344455556666555555556678899999988      99


Q ss_pred             HHHHHHHHHHHhhhHHHHHHhhhhhcccchhHHH
Q 008231          191 FFFNRFYFAISIGSLFAVIVLVYVQDNVGRGWGY  224 (573)
Q Consensus       191 ~~~~~~~~~~~ig~~~~~~~~~~l~~~~g~~~~f  224 (573)
                      ++.++++...++|..++|.+.|.+.+.+||++.|
T Consensus       346 ~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f  379 (379)
T TIGR00881       346 TAAGFVGFFAYLGGILAGLPLGYLADGFGWAGAF  379 (379)
T ss_pred             HHHHHHHHhhhhhhhhhhhhHHHHHHhhcccccC
Confidence            9999999999999999999999999999998754

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=99.20  E-value=5.3e-10  Score=119.66  Aligned_cols=183  Identities=16%  Similarity=0.051  Sum_probs=150.5

Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhHHHHHhhhccchh--HHHHHHHH
Q 008231           31 GWLAAGLILGTELSERICAMGISMNLVTYLVGDLHLSSAKSATIVTNFMGTLNLLGLLGGFLADAKLGRY--LTVAIFAS  108 (573)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr--~~~~~~~~  108 (573)
                      +.|.+...+++.++-+-+..++......|.++++|++..+...+..+.++...++.+++|++.||+ |.|  +++.+++.
T Consensus       279 ~~~~~~~fLia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~-g~k~~~~l~~~l~  357 (477)
T PF11700_consen  279 KLRQLFLFLIAYFLYSDGVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRF-GPKTKRTLLISLI  357 (477)
T ss_pred             hChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCchhHHHHHHHH
Confidence            446777788888888888889999999999999999999999999999999999999999999998 998  88888877


Q ss_pred             HHHHHHHHHHh--hccCCCCCCCCCccccccccccccchhhHHHHHHHHHHHHHhcCccccccccccccCCCCCCCchHH
Q 008231          109 VTALVVGLLTS--ATSIPSMRPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEE  186 (573)
Q Consensus       109 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~~~~  186 (573)
                      ++.+..+...+  ..+..                    ...+.+.+++.-++.|+..|..++..-++.+++.|+++    
T Consensus       358 ~~~~i~~~g~~G~~~~~~--------------------g~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~----  413 (477)
T PF11700_consen  358 LWIIIPLYGLFGFWPSFF--------------------GLKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGR----  413 (477)
T ss_pred             HHHHHHHHHHHHhhhccc--------------------CcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCch----
Confidence            76443322222  11100                    00356678888889999999999999999999999988    


Q ss_pred             HhHHHHHHHHHHHHHhhhHHHHHHhhhhhcccc-hhHHHHHHHHHHHHHHHHHHh
Q 008231          187 KAMIFFFNRFYFAISIGSLFAVIVLVYVQDNVG-RGWGYGISAGTMVVAAAILLI  240 (573)
Q Consensus       187 ~~r~~~~~~~~~~~~ig~~~~~~~~~~l~~~~g-~~~~f~~~~~~~~~~~~~~~~  240 (573)
                        .+..||++....-..+.+||++.|.+.+..| -|+.+....++.+++++++..
T Consensus       414 --e~efFgly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~~l~~lf~~gl~ll~~  466 (477)
T PF11700_consen  414 --EAEFFGLYAITGKASSWLGPLLFGLITDATGSQRYGFLFLLVLFLIGLILLFF  466 (477)
T ss_pred             --hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhh
Confidence              8999999999999999999999999998887 788887666666666666544

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=99.19  E-value=6e-10  Score=113.11  Aligned_cols=181  Identities=19%  Similarity=0.086  Sum_probs=143.1

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHH
Q 008231           32 WLAAGLILGTELSERICAMGISMNLVTYLVGDLHLSSAKSATIVTNFMGTLNLLGLLGGFLADAKLGRYLTVAIFASVTA  111 (573)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~  111 (573)
                      .+..|.++..-+...-++-++..++|.|++++++++..+++.+...+.+...+..+.+|+|+||+ |.+|++.+.....+
T Consensus       217 ~~~~W~lsllY~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~-Gg~rv~~~~f~~~~  295 (417)
T COG2223         217 NKDTWLLSLLYFATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRI-GGRRVTLAVFVGMA  295 (417)
T ss_pred             CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhc-cchhHHHHHHHHHH
Confidence            45788888888888888889999999999999999999999999999999999999999999999 88888888888888


Q ss_pred             HHHHHHHhhccCCCCCCCCCccccccccccccchhhHHHHHHHHHHHHHhcCccccccccccccCCCCCCCchHHHhHHH
Q 008231          112 LVVGLLTSATSIPSMRPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKAMIF  191 (573)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~  191 (573)
                      ++..+..+..+..  .           +      +.+....++..+..++..|.-+.....++..++|++       -+.
T Consensus       296 ~~~~~l~~~~~~~--~-----------~------~~~~~~~~~~~l~l~~~~G~GnGsvfk~Ip~if~~~-------~G~  349 (417)
T COG2223         296 LAAALLSLFLTGF--G-----------H------GGSFVVFVAVFLALFVFAGLGNGSVFKMIPVIFPKE-------TGA  349 (417)
T ss_pred             HHHHHHHcccccc--c-----------c------CcchHHHHHHHHHHHHHhccCcchheeechHHHHhh-------hhH
Confidence            8777776642100  0           0      123334444444455555555666778888888863       789


Q ss_pred             HHHHHHHHHHhhhHHHHHHhhhhhcccc-hhHHHHHHHHHHHHHHHHHH
Q 008231          192 FFNRFYFAISIGSLFAVIVLVYVQDNVG-RGWGYGISAGTMVVAAAILL  239 (573)
Q Consensus       192 ~~~~~~~~~~ig~~~~~~~~~~l~~~~g-~~~~f~~~~~~~~~~~~~~~  239 (573)
                      +.|+.....++|++.-|...+...+..| +...|++.....+++.+..+
T Consensus       350 v~G~vga~G~lGGf~lp~~~g~~~~~tg~~~~~f~~~~~~~~~a~v~~~  398 (417)
T COG2223         350 VTGIVGAIGGLGGFFLPLAFGVSLDLTGSYTGAFMLLLAFYLVALVLTW  398 (417)
T ss_pred             HHHHHHHhccccccchhHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999988887 88888887777766665433

>TIGR01272 gluP glucose/galactose transporter

Probab=99.16  E-value=7.4e-10  Score=112.63  Aligned_cols=163  Identities=10%  Similarity=0.003  Sum_probs=123.2

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--cCCCchhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHH
Q 008231           32 WLAAGLILGTELSERICAMGISMNLVTYLVGD--LHLSSAKSATIVTNFMGTLNLLGLLGGFLADAKLGRYLTVAIFASV  109 (573)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~--~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~  109 (573)
                      .+..+...+..++-...-.++..+++.|+.+.  +|+++.+.+...+.+..+..++.++++++.||+ |+||++.++..+
T Consensus       139 ~~~~~l~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~-g~~~~l~~~~~l  217 (310)
T TIGR01272       139 FTHLVLGALGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMI-SQGRYLAFNAFL  217 (310)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CHHHHHHHHHHH
Confidence            34455555554544445557788899999853  799999999999999999999999999999998 999998888877


Q ss_pred             HHHHHHHHHhhccCCCCCCCCCccccccccccccchhhHHHHHHHHHHHHHhcCccccccccccccCCCCCCCchHHHhH
Q 008231          110 TALVVGLLTSATSIPSMRPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKAM  189 (573)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~r  189 (573)
                      .+++..+.....                          ... ...+.++.|++.+...|...+...+.+|++.       
T Consensus       218 ~~~~~~l~~~~~--------------------------~~~-~~~~~~l~g~~~s~i~P~~~s~a~~~~~~~~-------  263 (310)
T TIGR01272       218 AVLLSIGAALTH--------------------------GYV-AMWFVLALGLFNSIMFPTIFSLALNALGRHT-------  263 (310)
T ss_pred             HHHHHHHHHHcC--------------------------CHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh-------
Confidence            777665554421                          111 1234557899999999999999988887642       


Q ss_pred             HHHHHHHHHHHHhhhHHHHHHhhhhhcccchhHHHHHHHHH
Q 008231          190 IFFFNRFYFAISIGSLFAVIVLVYVQDNVGRGWGYGISAGT  230 (573)
Q Consensus       190 ~~~~~~~~~~~~ig~~~~~~~~~~l~~~~g~~~~f~~~~~~  230 (573)
                      +.+.++. ....+|+.++|.+.|.+.|..|.+.+|++..++
T Consensus       264 ~~asai~-~~~~~Gg~i~P~l~G~lad~~g~~~a~~v~~~~  303 (310)
T TIGR01272       264 SQGSGIL-CLAIVGGAIVPLLQGSLADCLGIQLAFALPVPC  303 (310)
T ss_pred             hhhHHHH-HHHHhcchHHHHHHHHHHHhccchHHHHHHHHH
Confidence            3344454 456799999999999999999998888865543

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=99.16  E-value=1.9e-08  Score=101.00  Aligned_cols=153  Identities=18%  Similarity=0.135  Sum_probs=109.9

Q ss_pred             hhcCCCchhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCcccccccccc
Q 008231           62 GDLHLSSAKSATIVTNFMGTLNLLGLLGGFLADAKLGRYLTVAIFASVTALVVGLLTSATSIPSMRPPQCDDYRRKHHQC  141 (573)
Q Consensus        62 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (573)
                      ++.|++..|++.+.........+..++.|.++||+ |||+..+...++.+++++.--.                      
T Consensus        62 ~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~-Grk~~cl~~cily~~scl~k~~----------------------  118 (354)
T PF05631_consen   62 ESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRY-GRKKACLLFCILYSLSCLTKHS----------------------  118 (354)
T ss_pred             HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CchHHHHHHHHHHHHHHHHHhc----------------------
Confidence            57899999999999999999999999999999999 9999999999998888765443                      


Q ss_pred             ccchhhHHHHHHHHHHHHHhcCccccccccccccCCCCCCC-chHHHhHHHHHHHHH-HHHHhhhHHHHHHhhhhhcccc
Q 008231          142 IEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSD-PKEEKAMIFFFNRFY-FAISIGSLFAVIVLVYVQDNVG  219 (573)
Q Consensus       142 ~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~-~~~~~~r~~~~~~~~-~~~~ig~~~~~~~~~~l~~~~g  219 (573)
                           +++..++++|++.|++.....++.-++....+.++. +++-  .+.-++... ....+-++.+.+++-++.+..|
T Consensus       119 -----~~~~~L~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~~~--L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~  191 (354)
T PF05631_consen  119 -----SNYPVLLLGRVLGGIATSLLFSAFESWMVHEHNKRGFPQEW--LSDTFSLATFFGNGVVAIGAGVVANVLADWFG  191 (354)
T ss_pred             -----cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHH--HHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhC
Confidence                 367899999999999999988877775443333322 2221  344444333 2233344455555666666555


Q ss_pred             h--hHHHHHHHHHHHHHHHHHHhcCcc
Q 008231          220 R--GWGYGISAGTMVVAAAILLIGTPW  244 (573)
Q Consensus       220 ~--~~~f~~~~~~~~~~~~~~~~~~~~  244 (573)
                      .  .++|..++...+++.+++....+|
T Consensus       192 ~g~vaPF~~a~~~l~~~~~~I~~~W~E  218 (354)
T PF05631_consen  192 FGPVAPFDAAIVLLAVAAVLILKTWPE  218 (354)
T ss_pred             CCCcchHHHHHHHHHHHHHHHHhcccc
Confidence            4  788988887777766655544443

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.15  E-value=1.6e-10  Score=119.45  Aligned_cols=155  Identities=14%  Similarity=0.037  Sum_probs=127.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHH
Q 008231           33 LAAGLILGTELSERICAMGIS-MNLVTYLVGDLHLSSAKSATIVTNFMGTLNLLGLLGGFLADAKLGRYLTVAIFASVTA  111 (573)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~-~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~  111 (573)
                      +.++..+...++....+++.. ...|.|.++.+|.+..+.+.+.+...++..++.++.|++.||+ |||+.+..+..+.+
T Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~  288 (365)
T TIGR00900       210 PLLRTLLLLALLFNLVFAPAIVALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYF-KRMALMTGAIFVIG  288 (365)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-chhHHHHHHHHHHH
Confidence            345555555666666666665 6677777777999999999999999999999999999999998 99999988877777


Q ss_pred             HHHHHHHhhccCCCCCCCCCccccccccccccchhhHHHHHHHHHHHHHhcCccccccccccccCCCCCCCchHHHhHHH
Q 008231          112 LVVGLLTSATSIPSMRPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKAMIF  191 (573)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~  191 (573)
                      ++..+..+..                         .+.+.+++..++.|++.+...+...+++.|..|+++      |++
T Consensus       289 ~~~~~~~~~~-------------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~  337 (365)
T TIGR00900       289 LAILVVGLTP-------------------------PNFPLFLVLWFAIGVGYGPINVPQGTLLQRRVPAEL------LGR  337 (365)
T ss_pred             HHHHHHHhhc-------------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH------HHH
Confidence            7666665532                         125567778888999999998999999999999887      999


Q ss_pred             HHHHHHHHHHhhhHHHHHHhhhhhcccc
Q 008231          192 FFNRFYFAISIGSLFAVIVLVYVQDNVG  219 (573)
Q Consensus       192 ~~~~~~~~~~ig~~~~~~~~~~l~~~~g  219 (573)
                      +.++++...++|..++|.++|++.+.+|
T Consensus       338 ~~~~~~~~~~~~~~~g~~~~g~l~~~~g  365 (365)
T TIGR00900       338 VFGAQFSLSHAAWPLGLILAGPLADHLG  365 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            9999999999999999999999987654

>PRK10504 putative transporter; Provisional

Probab=99.14  E-value=8.7e-10  Score=118.99  Aligned_cols=158  Identities=11%  Similarity=-0.021  Sum_probs=124.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHH
Q 008231           33 LAAGLILGTELSERICAMGISMNLVTYLVGDLHLSSAKSATIVTNFMGTLNLLGLLGGFLADAKLGRYLTVAIFASVTAL  112 (573)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~  112 (573)
                      +.....+...++...++.......|.|++..+|.++.+.+++.....++..++.++.|+++||+ |||+++.++..+.++
T Consensus       261 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~-g~~~~~~~~~~~~~~  339 (471)
T PRK10504        261 RTFSLGLAGSFAGRIGSGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRF-GYRRVLVATTLGLAL  339 (471)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchHHHHHHHHHHHH
Confidence            3455566666666666655566677888888999999999999888888888889999999998 999999999887777


Q ss_pred             HHHHHHhhccCCCCCCCCCccccccccccccchhhHHHHHHHHHHHHHhcCccccccccccccCCCCCCCchHHHhHHHH
Q 008231          113 VVGLLTSATSIPSMRPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKAMIFF  192 (573)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~  192 (573)
                      +..++.+... .                      .+...+.+..++.|++.+...+....+..+..|+++      ++.+
T Consensus       340 ~~~~~~~~~~-~----------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~  390 (471)
T PRK10504        340 VSLLFMLVAL-L----------------------GWYYLLPFVLFLQGMVNSTRFSSMNTLTLKDLPDNL------ASSG  390 (471)
T ss_pred             HHHHHHhccc-c----------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHh------ccch
Confidence            7666655321 0                      123334445667788888877888888889999887      9999


Q ss_pred             HHHHHHHHHhhhHHHHHHhhhhhcccch
Q 008231          193 FNRFYFAISIGSLFAVIVLVYVQDNVGR  220 (573)
Q Consensus       193 ~~~~~~~~~ig~~~~~~~~~~l~~~~g~  220 (573)
                      ++++++...+|..+|+.++|.+.+..|+
T Consensus       391 ~~~~~~~~~~g~~ig~~i~g~ll~~~g~  418 (471)
T PRK10504        391 NSLLSMIMQLSMSIGVTIAGLLLGLFGQ  418 (471)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            9999999999999999999998776665

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.14  E-value=4.1e-10  Score=120.39  Aligned_cols=180  Identities=14%  Similarity=-0.027  Sum_probs=122.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHH
Q 008231           33 LAAGLILGTELSERICAMGISMNLVTYLVGDLHLSSAKSATIVTNFMGTLNLLGLLGGFLADAKLGRYLTVAIFASVTAL  112 (573)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~  112 (573)
                      +.+|......++.....+++..++|.|+++..|+|..+.+++...+.+...++.+++|+++||+ ++++....+..+..+
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~-~~~~~~~~~~~~~~~  329 (438)
T TIGR00712       251 KLLWYIAIANVFVYLLRYGVLDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKV-FKGNRGATGVFFMTL  329 (438)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCcccHHHHHHHHH
Confidence            3566666666676777788889999999998999999999999999999999999999999998 654322233322221


Q ss_pred             ---HHHHHHhhccCCCCCCCCCccccccccccccchhhHHHHHHHHHHHHHhcCccccccccccccCCCCCCCchHHHhH
Q 008231          113 ---VVGLLTSATSIPSMRPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKAM  189 (573)
Q Consensus       113 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~r  189 (573)
                         +..++.....                        .+.+......++.|.+.............|.+|+++      |
T Consensus       330 ~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~  379 (438)
T TIGR00712       330 VTIAVIVYWMNPA------------------------GNPLVDMICMIVIGFLIYGPVMLIGLHALELAPKKA------A  379 (438)
T ss_pred             HHHHHHHHHhcCC------------------------CchHHHHHHHHHHHHHHccHHHHHHHHHHHhcChhh------e
Confidence               1111111100                        112223333344444322222222345678899888      9


Q ss_pred             HHHHHHHHHHHHhhh-HHHHHHhhhhhcccchhHHHHHHHHHHHHHHHHHHhcCc
Q 008231          190 IFFFNRFYFAISIGS-LFAVIVLVYVQDNVGRGWGYGISAGTMVVAAAILLIGTP  243 (573)
Q Consensus       190 ~~~~~~~~~~~~ig~-~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~  243 (573)
                      +++.|+.+...++|+ .++|.+.|.+.+..||.+.|++..+..+++.+..++..+
T Consensus       380 g~~~g~~~~~~~~gg~~~gp~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  434 (438)
T TIGR00712       380 GTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMI  434 (438)
T ss_pred             eeehhhhchHHHhhhhhhcchhHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999988888774 689999999999999999988777666666555444443

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.13  E-value=4.5e-10  Score=118.40  Aligned_cols=171  Identities=11%  Similarity=0.010  Sum_probs=127.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc---CCCchhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHH
Q 008231           34 AAGLILGTELSERICAMGISMNLVTYLVGDL---HLSSAKSATIVTNFMGTLNLLGLLGGFLADAKLGRYLTVAIFASVT  110 (573)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~---~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~  110 (573)
                      .++..++..+.....+.......+.|+.+.+   +.+....+.+.+...+...++.++.|++.||+ |||+.+.++..+.
T Consensus       216 ~~~~~~l~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~-g~~~~l~~~~~l~  294 (396)
T TIGR00882       216 KFWMFVLYVVGVACVYDVFDQQFANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIINRI-GAKNALLIAGTIM  294 (396)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccchhHHHHHHHH
Confidence            3444444444444444445556778887665   55666778888888888899999999999998 9999999998888


Q ss_pred             HHHHHHHHhhccCCCCCCCCCccccccccccccchhhHHHHHHHHHHHHHhcCccccccccccccCCCCCCCchHHHhHH
Q 008231          111 ALVVGLLTSATSIPSMRPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKAMI  190 (573)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~  190 (573)
                      +++..+...+.                          +.+.+++.+++.|++..........+..+..+++.      ++
T Consensus       295 ~l~~~~~~~~~--------------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~a  342 (396)
T TIGR00882       295 SVRIIGSSFAT--------------------------TALEVVILKMLHAFEVPFLLVGCFKYITSQFDVRL------SA  342 (396)
T ss_pred             HHHHHHHHhcC--------------------------ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcce------EE
Confidence            88776666542                          45566777888888766555555556666667666      66


Q ss_pred             HHHHH-HHHHHHhhhHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHH
Q 008231          191 FFFNR-FYFAISIGSLFAVIVLVYVQDNVGRGWGYGISAGTMVVAAAI  237 (573)
Q Consensus       191 ~~~~~-~~~~~~ig~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~  237 (573)
                      ...+. ++....+|.++++.++|++.+..||+.+|.+.++..++..++
T Consensus       343 t~~~~~~~~~~~lg~~~~~~l~G~l~~~~G~~~~f~~~~~~~~i~~~~  390 (396)
T TIGR00882       343 TIYLIGFQFAKQLAMIFLSTLAGNMYDSIGFQGAYLVLGCIVLLFTLI  390 (396)
T ss_pred             EeehHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence            66666 678899999999999999999999999999877766555443

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.12  E-value=1.4e-09  Score=117.48  Aligned_cols=172  Identities=10%  Similarity=0.057  Sum_probs=112.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhHHHHHhhhccchhH-------HHHHHH
Q 008231           35 AGLILGTELSERICAMGISMNLVTYLVGDLHLSSAKSATIVTNFMGTLNLLGLLGGFLADAKLGRYL-------TVAIFA  107 (573)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~-------~~~~~~  107 (573)
                      .|.+....++.....+++.+++|.|+.+++|++..+++.+.+.+.++..++.+++|+++||+ |||+       ...+..
T Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~-~~r~~~~~r~~~~~~~~  332 (476)
T PLN00028        254 TWILALTYGYSFGVELTMDNIIAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVA-ARRFGMRGRLWALWIVQ  332 (476)
T ss_pred             hHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHH-HHhcCcchhHHHHHHHH
Confidence            44444444444555566777899999989999999999999999999999999999999998 8762       222222


Q ss_pred             HHHHHHHHHHHhhccCCCCCCCCCccccccccccccchhhHHHHHHHHHHHHHhcCccccccccccccCCCCCCCchHHH
Q 008231          108 SVTALVVGLLTSATSIPSMRPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEK  187 (573)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~~~~~  187 (573)
                      .+.+++..+....                          .+.....+..++.+++.+...+...++..+..| +.     
T Consensus       333 ~l~~i~~~~~~~~--------------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~-----  380 (476)
T PLN00028        333 TLGGVFCIWLGRA--------------------------NSLGAAIVVMILFSIFVQAACGATFGIVPFVSR-RS-----  380 (476)
T ss_pred             HHHHHHHHHhccc--------------------------chHHHHHHHHHHHHHHHHHhhhhhcccCcccCh-hh-----
Confidence            2222222222221                          123333444445555544444455556666544 45     


Q ss_pred             hHHHHHHHHHHHHHhhhHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHHHHhc
Q 008231          188 AMIFFFNRFYFAISIGSLFAVIVLVYVQDNVGRGWGYGISAGTMVVAAAILLIG  241 (573)
Q Consensus       188 ~r~~~~~~~~~~~~ig~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~  241 (573)
                       |+...++.+.+.++|+.++|.+.+ ..+..+|+..|++.++..+++.++.++.
T Consensus       381 -~g~~~g~~~~~g~lg~~i~~~l~~-~~~~~~y~~~f~~~~~~~~i~~~~~~~~  432 (476)
T PLN00028        381 -LGVISGLTGAGGNVGAVLTQLLFF-TGSSYSTETGISLMGVMIIACTLPVAFI  432 (476)
T ss_pred             -chhhhhhhhccccHHHHHHHHHHH-hcCCccHhhHHHHHHHHHHHHHHHHHhe
Confidence             899999987777788877776654 2234569999988877777776655544

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.12  E-value=8.9e-10  Score=116.41  Aligned_cols=173  Identities=15%  Similarity=0.126  Sum_probs=113.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHH-HHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHH
Q 008231           35 AGLILGTELSERICAMGISMNLVTYLVGDLHLSSAKSATIVTNFM-GTLNLLGLLGGFLADAKLGRYLTVAIFASVTALV  113 (573)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~-~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~  113 (573)
                      .+..+...++..........+.+.|+.+++|++..+.+++.+... .+..++.+++|++.||+ |||+.+.++..+..+.
T Consensus       211 ~~~~l~~~~l~~~~~~~~~~~~~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~-g~~~~l~~~~~~~~l~  289 (402)
T PRK11902        211 AWALLLLIVLYKLGDAFAGSLSTTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRL-GLYRSLMLFGVLQAVS  289 (402)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHH
Confidence            333344334433333333344556788889999999999887654 45788999999999998 9999887777666555


Q ss_pred             HHHHHhhccCCCCCCCCCccccccccccccchhhHHHHHHHHH----HHHHhcCccccccccccccCCCCCCCchHHHhH
Q 008231          114 VGLLTSATSIPSMRPPQCDDYRRKHHQCIEANGKQLAMLYAAL----YTIALGGGGIKSNVSGFGSDQFDTSDPKEEKAM  189 (573)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~l~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~r  189 (573)
                      .+.+......+                      .+.+.+++..    +..|++.+...+....++.+.+|.++      +
T Consensus       290 ~l~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~  341 (402)
T PRK11902        290 NLGYWVLAVTP----------------------KHLWTMALAIGIENLCGGMGTAAFVALLMALCNRSFSATQ------Y  341 (402)
T ss_pred             HHHHHHHHhcC----------------------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHH------H
Confidence            43332211001                      1233333333    34566666667777778888777544      3


Q ss_pred             HHHHHHHHHHHHhhhHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHHHHh
Q 008231          190 IFFFNRFYFAISIGSLFAVIVLVYVQDNVGRGWGYGISAGTMVVAAAILLI  240 (573)
Q Consensus       190 ~~~~~~~~~~~~ig~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~  240 (573)
                          ++++...++|..++..++|++.+.+||+..|.+.+++.+++.++...
T Consensus       342 ----~~~~~~~~l~~~~~~~~~G~l~~~~G~~~~f~~~~~~~~~~~~~~~~  388 (402)
T PRK11902        342 ----ALLSALASVGRVYVGPTSGYLVEAYGWPGFYLMTVVIALPGLALLWL  388 (402)
T ss_pred             ----HHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH
Confidence                44444456777766778999999999999999888777666555433

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.10  E-value=2.4e-09  Score=112.37  Aligned_cols=171  Identities=12%  Similarity=-0.035  Sum_probs=117.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHH
Q 008231           35 AGLILGTELSERICAMGISMNLVTYLVGDLHLSSAKSATIVTNFMGTLNLLGLLGGFLADAKLGRYLTVAIFASVTALVV  114 (573)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~  114 (573)
                      .+......++...+.+....++++|+.+.+|++..+.+++.+.+.++..++.++.|++.||+ |+|+.+..+..+.+++.
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~-~~~~~~~~~~~~~~i~~  279 (382)
T PRK10091        201 PWLIFAATMFGNAGVFAWFSYIKPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRY-SPLRIAAVTDFIIVLAL  279 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheecccc-CchhHHHHHHHHHHHHH
Confidence            44444444444555555667778899888999999999999999999999999999999998 99999998888777776


Q ss_pred             HHHHhhccCCCCCCCCCccccccccccccchhhHHHHHHHHHHHHHhcCcccccccc-ccccCCCCCCCchHHHhHHHHH
Q 008231          115 GLLTSATSIPSMRPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVS-GFGSDQFDTSDPKEEKAMIFFF  193 (573)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~-~~~~~~~~~~~~~~~~~r~~~~  193 (573)
                      .+.....                         .+.+..++..++.+.+.....+... ....+..+++.      ++.+ 
T Consensus       280 ~~~~~~~-------------------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~------~~~~-  327 (382)
T PRK10091        280 LMLFFFG-------------------------GMKTASLIFAFICCAGLFALSAPLQILLLQNAKGGEL------LGAA-  327 (382)
T ss_pred             HHHHHHH-------------------------hhHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCcchH------HHHH-
Confidence            5554321                         1223344444455555444333333 23333333333      4443 


Q ss_pred             HHHHHHHHhhhHHHHHHhhhhhcc-cchhHHHHHHHHHHHHHHHHHH
Q 008231          194 NRFYFAISIGSLFAVIVLVYVQDN-VGRGWGYGISAGTMVVAAAILL  239 (573)
Q Consensus       194 ~~~~~~~~ig~~~~~~~~~~l~~~-~g~~~~f~~~~~~~~~~~~~~~  239 (573)
                       ..+...++|..+||.++|++.+. .+|++++.+.++..+++...+.
T Consensus       328 -~~~~~~~~g~~~Gp~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~  373 (382)
T PRK10091        328 -GGQIAFNLGSAIGAYCGGMMLTLGLAYNYVALPAALLSFAAMSSLL  373 (382)
T ss_pred             -HHHHHHHHHHHHHHHHhHHHHHcccCcchHHHHHHHHHHHHHHHHH
Confidence             34567789999999999999885 6899999888766655544433

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.10  E-value=2.6e-09  Score=113.58  Aligned_cols=146  Identities=19%  Similarity=0.126  Sum_probs=107.4

Q ss_pred             HHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHhhccCCCCC
Q 008231           48 CAMGISMNLVTYLVGDLHLSSAKSATIVTNFMGTLNLLGLLGGFLADAKLGRYLTVAIFASVTALVVGLLTSATSIPSMR  127 (573)
Q Consensus        48 ~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~  127 (573)
                      ..+.+..++|.|+++ .|.+..+.+.+.+.+.++..++.++.|+++||+ |||+.+..+..+..+...+......     
T Consensus       246 ~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~-~~~~~~~~~~~~~~~~~~~~~~~~~-----  318 (426)
T PRK12307        246 ANWPIFGLLPTYLAG-EGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRI-GLKKTFSIGLLMSFLFIFPLFRIPQ-----  318 (426)
T ss_pred             HHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHHHcc-----
Confidence            344566788888875 699999999999999999999999999999998 9999998888776655544433211     


Q ss_pred             CCCCccccccccccccchhhHHHHHHHHHHHHHhcCccccccccccccCCCCCCCchHHHhHHHHHHHHHHHHHhhhHHH
Q 008231          128 PPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKAMIFFFNRFYFAISIGSLFA  207 (573)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~  207 (573)
                                         .....+.+..+..+.+..+..+..+.++.|.+|++.      |++++|+.+...++|+.++
T Consensus       319 -------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~~~~~~~~~~g  373 (426)
T PRK12307        319 -------------------DNYLLLGACLFGLMATNVGVGGLVPKFLYDYFPLEV------RGLGTGLIYNLAATSGTFN  373 (426)
T ss_pred             -------------------ccHHHHHHHHHHHHHhcccHhHHHHHHHHHhCcHHH------HhhhhhHHHHHHhHHHHHH
Confidence                               011111122222222333334556678899999888      9999999999999999999


Q ss_pred             HHHhhhhhcccchhHHHH
Q 008231          208 VIVLVYVQDNVGRGWGYG  225 (573)
Q Consensus       208 ~~~~~~l~~~~g~~~~f~  225 (573)
                      |++.|++.+.+|+....+
T Consensus       374 p~~~g~l~~~~g~~~~~~  391 (426)
T PRK12307        374 SMAATWLGITMGLGAALT  391 (426)
T ss_pred             HHHHHHHHHcccHHHHHH
Confidence            999999999888765433

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.10  E-value=8.4e-10  Score=117.75  Aligned_cols=162  Identities=14%  Similarity=-0.011  Sum_probs=122.6

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHH
Q 008231           32 WLAAGLILGTELSERICAMGISMNLVTYLVGDLHLSSAKSATIVTNFMGTLNLLGLLGGFLADAKLGRYLTVAIFASVTA  111 (573)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~  111 (573)
                      .|.++..+...++...+++......+.|.+..++ +..+.+++.++..++..++.+++|+++||+ |||+++.++..+.+
T Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~-g~~~~~~~~~~~~~  298 (437)
T TIGR00792       221 NDQLLILCLAYLFYNLAFNIKNGVQVYYFTYVLG-DPELFSYMGSIAIVAGLIGVLLFPRLVKKF-GRKILFAGGILLMV  298 (437)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHcchhheeEeeecC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHH
Confidence            3456666777777777776665555556555566 566777788888899999999999999998 99999999988888


Q ss_pred             HHHHHHHhhccCCCCCCCCCccccccccccccchhhHHHHHHHHHHHHHhcCccccccccccccCCCCCCCch-HHHhHH
Q 008231          112 LVVGLLTSATSIPSMRPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPK-EEKAMI  190 (573)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~~-~~~~r~  190 (573)
                      ++.++..+..                         .+.+.+++..++.|++.+...+...++++|..+.++.+ .+..+|
T Consensus       299 ~~~~~~~~~~-------------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G  353 (437)
T TIGR00792       299 LGYLIFFFAG-------------------------SNLPLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEG  353 (437)
T ss_pred             HHHHHHHHcc-------------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchH
Confidence            8776665531                         13455666777888999888888889999887633210 011278


Q ss_pred             HHHHHHHHHHHhhhHHHHHHhhhhhcccch
Q 008231          191 FFFNRFYFAISIGSLFAVIVLVYVQDNVGR  220 (573)
Q Consensus       191 ~~~~~~~~~~~ig~~~~~~~~~~l~~~~g~  220 (573)
                      ..++++++...+|..+++.+.|++.+..||
T Consensus       354 ~~~~~~~~~~~~g~~lg~~i~g~ll~~~G~  383 (437)
T TIGR00792       354 LVYSVRTFVRKLGQALAGFLVGLILGIIGY  383 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            999999999999999999999999877666

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.09  E-value=1.8e-09  Score=114.45  Aligned_cols=165  Identities=12%  Similarity=-0.069  Sum_probs=115.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hcCCCchhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHH-HHHHHHHH
Q 008231           33 LAAGLILGTELSERICAMGISMNLVTYLVG-DLHLSSAKSATIVTNFMGTLNLLGLLGGFLADAKLGRYLT-VAIFASVT  110 (573)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~-~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~-~~~~~~~~  110 (573)
                      +..|......++....++++..++|.|+++ ..|.+..+++.......++..++.+++|+++||+ +||+. +.....+.
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~-~~r~~~~~~~~~~~  320 (412)
T TIGR02332       242 PAIMLYTLAYFCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRL-KERKHHTALPYLFA  320 (412)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhccc-CccHHHHHHHHHHH
Confidence            356667777777788888999999999987 3578888999999999999999999999999998 87764 33333333


Q ss_pred             HHHHHHHHhhccCCCCCCCCCccccccccccccchhhHHHHHHHHHHHHHhcCccccccccccccCCCCCCCchHHHhHH
Q 008231          111 ALVVGLLTSATSIPSMRPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKAMI  190 (573)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~  190 (573)
                      .++..+ ....  .                       +....+.+..+.+.|.....+.......|.+|+++      |+
T Consensus       321 ~~~~~~-~~~~--~-----------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~------~~  368 (412)
T TIGR02332       321 AAGWLL-ASAT--D-----------------------HNLIQLLGIIMASMGSFSAMAIFWTTPDQSISLQA------RA  368 (412)
T ss_pred             HHHHHH-HHhc--C-----------------------CHHHHHHHHHHHHHHhhhhhhHHHhhcccccchHH------HH
Confidence            333222 2111  0                       11111112222233332222333445567788777      99


Q ss_pred             HHHHHHHHHHHhhhHHHHHHhhhhhcccc-hhHHHHHHHHH
Q 008231          191 FFFNRFYFAISIGSLFAVIVLVYVQDNVG-RGWGYGISAGT  230 (573)
Q Consensus       191 ~~~~~~~~~~~ig~~~~~~~~~~l~~~~g-~~~~f~~~~~~  230 (573)
                      .++|+.+...++|+.++|.+.|.+.+..| |++.|++.++.
T Consensus       369 ~a~g~~~~~~~~g~~~~p~~~g~i~~~~g~~~~~~~~~~~~  409 (412)
T TIGR02332       369 IAIAVINATGNIGSALSPFLIGILKDATGSFNSGLWFVAAL  409 (412)
T ss_pred             HHHHHHHHhhhhhhhhhhhhcccccccCCCCchhHHHHHHH
Confidence            99999999999999999999999999875 99988766553

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.08  E-value=1.6e-07  Score=102.75  Aligned_cols=206  Identities=12%  Similarity=0.133  Sum_probs=146.6

Q ss_pred             hHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHH
Q 008231           33 LAAGLI-LGTELSERICAMGISMNLVTYLVGDLHLSSAKSATIVTNFMGTLNLLGLLGGFLADAKLGRYLTVAIFASVTA  111 (573)
Q Consensus        33 ~~~~~~-~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~  111 (573)
                      +.+.++ ....+...+. .+..+...+-+++.++++.++.|++.+.+-++..+...+-.+.+-|. -|-+.+-+|.++++
T Consensus        96 k~fl~~l~~~~~~q~l~-~~y~~s~IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~-HrPr~Ig~G~~~m~  173 (735)
T KOG3626|consen   96 KMFLVLLSLAAFAQGLY-VGYFNSVITTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRG-HRPRWIGIGLVLMG  173 (735)
T ss_pred             chHHHHHHHHHHHHHhh-hhhhhhhhhhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhcccc-CccceeeechhHHH
Confidence            334444 4444444444 47777788889999999999999999999999999999999999997 88889999999999


Q ss_pred             HHHHHHHhhccC-------------CCCCC------CCCcccccccc----ccc--cchhh-HHHHHHHHHHHHHhcCcc
Q 008231          112 LVVGLLTSATSI-------------PSMRP------PQCDDYRRKHH----QCI--EANGK-QLAMLYAALYTIALGGGG  165 (573)
Q Consensus       112 ~~~~~~~~~~~~-------------~~~~~------~~~~~~~~~~~----~~~--~~~~~-~~~~~~~~~~l~g~g~~~  165 (573)
                      ++.+++++=..+             +...+      ++|++.....+    .+-  ..... -...++++.++.|+|...
T Consensus       174 lgsll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tp  253 (735)
T KOG3626|consen  174 LGSLLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATP  253 (735)
T ss_pred             HHHHHHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCC
Confidence            999998862100             00000      00110001111    110  01111 233677899999999999


Q ss_pred             ccccccccccCCCCCCCchHHHhHHHHHHHHHHHHHhhhHHHHHHhhhhhccc------------------c-hhHHHHH
Q 008231          166 IKSNVSGFGSDQFDTSDPKEEKAMIFFFNRFYFAISIGSLFAVIVLVYVQDNV------------------G-RGWGYGI  226 (573)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~~~~~l~~~~------------------g-~~~~f~~  226 (573)
                      ..+...+|+-|...+++      -...+|+.+....+|.++|.++++++...+                  | |+.-|.+
T Consensus       254 i~tlGisYiDDnvk~~~------SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi  327 (735)
T KOG3626|consen  254 IFTLGISYIDDNVKKKN------SPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLI  327 (735)
T ss_pred             CccCCCccccccccccC------CcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHH
Confidence            99999999999988887      889999999999999999999998875321                  3 5556777


Q ss_pred             HHHHHHHHHHHHHhcCcccc
Q 008231          227 SAGTMVVAAAILLIGTPWYR  246 (573)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~  246 (573)
                      .+.+.++..+.++++.++.+
T Consensus       328 ~g~~~~~~a~p~f~fPk~lp  347 (735)
T KOG3626|consen  328 CGALLLFSAVPLFFFPKELP  347 (735)
T ss_pred             HHHHHHHHHHHHHhCcccCc
Confidence            77776666666666555443

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.08  E-value=5e-09  Score=112.89  Aligned_cols=178  Identities=13%  Similarity=-0.063  Sum_probs=123.5

Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHH--------
Q 008231           31 GWLAAGLILGTELSERICAMGISMNLVTYLVGDLHLSSAKSATIVTNFMGTLNLLGLLGGFLADAKLGRYLT--------  102 (573)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~--------  102 (573)
                      +++.+|...+..+.....++.+..++|.|+.+.+|.+..+.++..+...++..++.+++|+++||+ ++|+.        
T Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~-~~~~~~~~~~~~~  337 (465)
T TIGR00894       259 KSLPVWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFL-KSSKTLSLTAARK  337 (465)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCCcHHHHHH
Confidence            445778888888999999999999999999999999999999999999999999999999999997 54421        


Q ss_pred             HHHHHHHHHHHHHHHHhhccCCCCCCCCCccccccccccccchhhHHHHHHHHHHHHHhcCccccccccccccCCCCCCC
Q 008231          103 VAIFASVTALVVGLLTSATSIPSMRPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSD  182 (573)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~  182 (573)
                      +..+......+..+..... ..                      .+....++...+.+.+.++..+.......|..|+ .
T Consensus       338 ~~~~~~~~~~~~~~~~~~~-~~----------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~  393 (465)
T TIGR00894       338 IFNGIGGLGPGIFAYALPY-LS----------------------AAFYLTIIILTLANAVSSGPLAGVLINSLDLAPR-F  393 (465)
T ss_pred             HHHHHHHHHHHHHHHHHHH-cC----------------------CchHHHHHHHHHHHHHhhhhhhhhhhchhhcChh-H
Confidence            1111111111111111110 00                      1222333344444555555445554555566554 5


Q ss_pred             chHHHhHHHHHHHHHHHHHhhhHHHHHHhhhhhccc---chhHHHHHHHHHHHHHHHHHH
Q 008231          183 PKEEKAMIFFFNRFYFAISIGSLFAVIVLVYVQDNV---GRGWGYGISAGTMVVAAAILL  239 (573)
Q Consensus       183 ~~~~~~r~~~~~~~~~~~~ig~~~~~~~~~~l~~~~---g~~~~f~~~~~~~~~~~~~~~  239 (573)
                            ++.+.++.+...++|+.++|.+.|++.+..   +|...|.+.++..+++.++..
T Consensus       394 ------~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~  447 (465)
T TIGR00894       394 ------LGFIKGITGLPGFIGGLIASTLAGNILSQDSKNVWLIVFLIMAFVNILCVIFYL  447 (465)
T ss_pred             ------HHHHHHHHHHHHHHHHHHHHHhhheeeCCCCchHHHHHHHHHHHHHHHHHHHee
Confidence                  999999999999999999999999987643   388888887777666655443

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=99.08  E-value=2.5e-09  Score=102.24  Aligned_cols=168  Identities=13%  Similarity=0.049  Sum_probs=135.0

Q ss_pred             cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHH
Q 008231           28 KTGGWLAAGLILGTELSERICAMGISMNLVTYLVGDLHLSSAKSATIVTNFMGTLNLLGLLGGFLADAKLGRYLTVAIFA  107 (573)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~  107 (573)
                      .....+.+|++.+.+++-.++.+=....-+.+.++.+|+|+..++.+.++......+.+++.|.++|++ ||+-..+.+.
T Consensus       259 v~~f~ppfw~~~iicv~yyva~fPFi~lg~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~-G~n~~wv~~a  337 (459)
T KOG4686|consen  259 VNTFYPPFWVLVIICVLYYVAWFPFITLGPMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKY-GFNLWWVASA  337 (459)
T ss_pred             ccccCccHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhh-cceehhHHHH
Confidence            355667889999999888888777777778999999999999999999999999999999999999999 9997776665


Q ss_pred             H-HHHHHHHHHHhhccCCCCCCCCCccccccccccccchhhHHHHHHHHHHHHHhcCccccccccccccCCCCCCCchHH
Q 008231          108 S-VTALVVGLLTSATSIPSMRPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEE  186 (573)
Q Consensus       108 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~~~~  186 (573)
                      . .+.++..++.++                            .+.-+++..+.|+.........+.+++-..|++.    
T Consensus       338 ~~~tl~~H~~l~Ft----------------------------~lsPy~~m~~lGLsysllAcslWP~va~~vpE~q----  385 (459)
T KOG4686|consen  338 CILTLLGHSGLFFT----------------------------FLSPYTSMTFLGLSYSLLACSLWPCVASLVPEEQ----  385 (459)
T ss_pred             HHHHHHHhhhHHhh----------------------------hccHHHHHHHHhhhHHHHHHHHhhhhhhhCCHHH----
Confidence            4 445556666653                            2234556667788877776667788888889888    


Q ss_pred             HhHHHHHHHHHHHHHhhhHHHHHHhhhhhcccc---hhHHHHHHHHH
Q 008231          187 KAMIFFFNRFYFAISIGSLFAVIVLVYVQDNVG---RGWGYGISAGT  230 (573)
Q Consensus       187 ~~r~~~~~~~~~~~~ig~~~~~~~~~~l~~~~g---~~~~f~~~~~~  230 (573)
                        .|++++..+...|+|-.+-|+++|.+.+.-|   |--+|++....
T Consensus       386 --LGTaygf~qsIqNLgla~i~Iiag~i~d~~g~y~~le~ffl~~~~  430 (459)
T KOG4686|consen  386 --LGTAYGFIQSIQNLGLAFIPIIAGFIADGDGSYDNLEAFFLIIGL  430 (459)
T ss_pred             --hcchHHHHHHHHhhhhhHHhhhhheeecCCCchhhHHHHHHHHHH
Confidence              9999999999999999999999999998655   33455544443

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.07  E-value=7e-09  Score=109.68  Aligned_cols=169  Identities=12%  Similarity=-0.122  Sum_probs=124.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHH
Q 008231           34 AAGLILGTELSERICAMGISMNLVTYLVGDLHLSSAKSATIVTNFMGTLNLLGLLGGFLADAKLGRYLTVAIFASVTALV  113 (573)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~  113 (573)
                      .++...+...+.....+......|.|+.+++|++..+.++......++..++.++.|+++||+ |+|+.+.++..+.+++
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~-~~~~~~~~~~~~~~~g  294 (406)
T PRK15402        216 RFVAGALALGLVSLPLLAWIALSPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRR-PLRSLIRMGLWPMVAG  294 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHH
Confidence            445555555555555556666778888889999999999888877788889999999999998 9999999988877777


Q ss_pred             HHHHHhhccCCCCCCCCCccccccccccccchhhHHHHHHHHHHHHHhcCccccccccccccCCCCCCCchHHHhHHHHH
Q 008231          114 VGLLTSATSIPSMRPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKAMIFFF  193 (573)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  193 (573)
                      ..+..+.....                     ..+...++++.++.|+|.+...+........ .++++      |++..
T Consensus       295 ~~~~~~~~~~~---------------------~~~~~~~~~~~~~~g~g~~~~~~~~~~~~~~-~~~~~------~g~~~  346 (406)
T PRK15402        295 LLLAALATVIS---------------------SHAYLWLTAGLSLYAFGIGLANAGLYRLTLF-SSDVS------KGTVS  346 (406)
T ss_pred             HHHHHHHHHcc---------------------cccHHHHHHHHHHHHHHHHHHhhhHHHHHhh-hcccc------ccHHH
Confidence            77666532100                     0234456677788888888776665554433 33456      99999


Q ss_pred             HHHHHHHHhhhHHHHHHhhhhhcccchhHHHHHHHHHH
Q 008231          194 NRFYFAISIGSLFAVIVLVYVQDNVGRGWGYGISAGTM  231 (573)
Q Consensus       194 ~~~~~~~~ig~~~~~~~~~~l~~~~g~~~~f~~~~~~~  231 (573)
                      +.+++...+|..+|+.+.+++.+..++....+..++..
T Consensus       347 ~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~  384 (406)
T PRK15402        347 AAMGMLSMLIFTVGIELSKHAYLGGGNGLFNLFNLANG  384 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcccCCchHHHHHHHHHHH
Confidence            99999999999999999999988877665444444333

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.07  E-value=3.4e-09  Score=111.48  Aligned_cols=174  Identities=15%  Similarity=-0.003  Sum_probs=122.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHH-HHHHHHhHHHHHhhhccchhHHHHHHHHHHHHH
Q 008231           35 AGLILGTELSERICAMGISMNLVTYLVGDLHLSSAKSATIVTNFMG-TLNLLGLLGGFLADAKLGRYLTVAIFASVTALV  113 (573)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~-~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~  113 (573)
                      .+..+...++...+.....++.++|+.+ .|++..+.+++...... ...++.+++|++.||+ |+|+.+..+..+.++.
T Consensus       210 ~~~~~~~~~l~~~~~~~~~~~~~~~l~~-~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~-g~~~~l~~~~~~~~~~  287 (390)
T TIGR02718       210 AWSLLALALLSAMTAVSGFGLSKLYLVD-AGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRA-GLWRTFILGVGLAGSL  287 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhHHHHh-cCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHH
Confidence            4444445555556666666778888875 79999999999888764 5667789999999998 9999998877665333


Q ss_pred             HHHHHhhccCCCCCCCCCccccccccccccchhhHHHHHHHHHHHHHhcCccccccccccccCCCCC-CCchHHHhHHHH
Q 008231          114 VGLLTSATSIPSMRPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDT-SDPKEEKAMIFF  192 (573)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~-~~~~~~~~r~~~  192 (573)
                      ............                    ..+...++....+.+++.+...+...+...+..++ +.      +++.
T Consensus       288 ~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~------~g~~  341 (390)
T TIGR02718       288 ALLWFAQAAFWL--------------------APGIAVAWSCSAFGSLITGITSVAIYTAFMRFAGDGDQ------AGTD  341 (390)
T ss_pred             HHHHHHHHHccc--------------------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccc------hHHH
Confidence            322221110000                    01222333444455556666666666776676665 55      8999


Q ss_pred             HHHHHHHHHhhhHHHHHHhhhhhcccchhHHHHHHHHHHHHHHH
Q 008231          193 FNRFYFAISIGSLFAVIVLVYVQDNVGRGWGYGISAGTMVVAAA  236 (573)
Q Consensus       193 ~~~~~~~~~ig~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~  236 (573)
                      ++..+...++|..+||.++|++.+..|++..|.+.++..+++.+
T Consensus       342 ~~~~~~~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~~~~l~a~~  385 (390)
T TIGR02718       342 VTAVQSTRDLGELIASSIAGYLTDRFGYAGGFLSGTVLAVLAIL  385 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999877766555443

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.07  E-value=1.8e-09  Score=116.90  Aligned_cols=172  Identities=14%  Similarity=0.029  Sum_probs=143.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHH
Q 008231           34 AAGLILGTELSERICAMGISMNLVTYLVGDLHLSSAKSATIVTNFMGTLNLLGLLGGFLADAKLGRYLTVAIFASVTALV  113 (573)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~  113 (573)
                      .+...+...++.++....+...+|.+..+.+|.+....|++.+.+.++..++.++.+++.+|+ ++++.+..+.++++++
T Consensus       219 ~l~~~l~~~~~~~l~~~a~~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~-~~~~lv~~~~~~~a~~  297 (524)
T PF05977_consen  219 PLRSVLLRSFLFNLFASAVWALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRL-SSRRLVLLASLLFALA  297 (524)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhccc-CcchhhHHHHHHHHHH
Confidence            333344444444555555667788888899999999999999999999999999999999998 9999999998888888


Q ss_pred             HHHHHhhccCCCCCCCCCccccccccccccchhhHHHHHHHHHHHHHhcCccccccccccccCCCCCCCchHHHhHHHHH
Q 008231          114 VGLLTSATSIPSMRPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKAMIFFF  193 (573)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  193 (573)
                      .+.++++                          .+.+..++..++.|++.........+.+.+..|++.      ||+++
T Consensus       298 ~~~lal~--------------------------~~~~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~------~GRv~  345 (524)
T PF05977_consen  298 LLLLALS--------------------------PSFWLALIALFLAGAAWIIANSSLNTLVQLSVPDWV------RGRVF  345 (524)
T ss_pred             HHHHhcc--------------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH------HhHHH
Confidence            8888776                          356777788888999998888888899999999998      99999


Q ss_pred             HHHHHHHHhhhHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHHH
Q 008231          194 NRFYFAISIGSLFAVIVLVYVQDNVGRGWGYGISAGTMVVAAAIL  238 (573)
Q Consensus       194 ~~~~~~~~ig~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~  238 (573)
                      +++++....+..+|.++.|.+.+.+|.+.++.++++..+++.++.
T Consensus       346 si~~~~~~g~~~lGsll~G~la~~~g~~~al~~a~~~lll~~~~~  390 (524)
T PF05977_consen  346 SIYQMVFFGGMPLGSLLWGFLADHFGVRTALLIAGAALLLSALIA  390 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999988887776655554443

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>TIGR00895 2A0115 benzoate transport

Probab=99.06  E-value=1.4e-09  Score=113.99  Aligned_cols=147  Identities=15%  Similarity=-0.012  Sum_probs=114.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHH
Q 008231           34 AAGLILGTELSERICAMGISMNLVTYLVGDLHLSSAKSATIVTNFMGTLNLLGLLGGFLADAKLGRYLTVAIFASVTALV  113 (573)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~  113 (573)
                      ..+.+....++....++....++| ++.+++|.+..+.+.+.+...++..++.+++|+++||+ |||+.+.........+
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~  328 (398)
T TIGR00895       251 ITVLLWLLYFMLLVGVYFLTNWLP-KLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADRL-GPRVTALLLLLGAVFA  328 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-chHHHHHHHHHHHHHH
Confidence            344445555566667777777777 66778999999999999999999999999999999998 9985544443333333


Q ss_pred             HHHHHhhccCCCCCCCCCccccccccccccchhhHHHHHHHHHHHHHhcCccccccccccccCCCCCCCchHHHhHHHHH
Q 008231          114 VGLLTSATSIPSMRPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKAMIFFF  193 (573)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  193 (573)
                      ..+....                          .+...+++..++.|++.+...+...+++.|.+|+++      |++++
T Consensus       329 ~~~~~~~--------------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~  376 (398)
T TIGR00895       329 VLVGSTL--------------------------FSPTLLLLLGAIAGFFVNGGQSGLYALMALFYPTAI------RATGV  376 (398)
T ss_pred             HHHHHHh--------------------------hCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHH------HHHHH
Confidence            2222211                          134456667788899999888999999999999888      99999


Q ss_pred             HHHHHHHHhhhHHHHHHhhhh
Q 008231          194 NRFYFAISIGSLFAVIVLVYV  214 (573)
Q Consensus       194 ~~~~~~~~ig~~~~~~~~~~l  214 (573)
                      ++.+....+|..+||.++|++
T Consensus       377 g~~~~~~~~g~~~g~~~~G~l  397 (398)
T TIGR00895       377 GWAIGIGRLGAIIGPILAGYL  397 (398)
T ss_pred             HHHHHHHHHHHHHHHHhHHhc
Confidence            999999999999999999876

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=99.04  E-value=2.9e-11  Score=131.16  Aligned_cols=202  Identities=13%  Similarity=0.101  Sum_probs=3.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHH
Q 008231           37 LILGTELSERICAMGISMNLVTYLVGDLHLSSAKSATIVTNFMGTLNLLGLLGGFLADAKLGRYLTVAIFASVTALVVGL  116 (573)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~  116 (573)
                      .+++..+.+ ....+......+-+++.++++.+++|++.+.+-++..+..++-.++++|. .|-|-+-+|.++.++|.++
T Consensus         7 ~~~~~~~~q-~~~~g~~~~~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~-hrprwig~g~~~~~~g~~l   84 (539)
T PF03137_consen    7 FLCLLGLFQ-MMVSGYVNSSLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRG-HRPRWIGIGALLMGLGSLL   84 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHH-HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-CCcceeeecHHHHHHHHHH
Confidence            344444555 66667777777889999999999999999999999999999999999996 7888888999999999988


Q ss_pred             HHhhccC-CCC--------------CCCCC--------cccccccccc-ccchhhHHHHHHHHHHHHHhcCccccccccc
Q 008231          117 LTSATSI-PSM--------------RPPQC--------DDYRRKHHQC-IEANGKQLAMLYAALYTIALGGGGIKSNVSG  172 (573)
Q Consensus       117 ~~~~~~~-~~~--------------~~~~~--------~~~~~~~~~~-~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~  172 (573)
                      +++=..+ +.+              ...-|        .+......++ +.....-+..++++.++.|+|....++...+
T Consensus        85 ~~lPhf~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~t  164 (539)
T PF03137_consen   85 FALPHFLSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGIT  164 (539)
T ss_dssp             -------------------------------------------------------------------SSS----------
T ss_pred             HhccHhhcCCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceee
Confidence            8762110 000              00111        0000000111 1222223567888999999999999999999


Q ss_pred             cccCCCCCCCchHHHhHHHHHHHHHHHHHhhhHHHHHHhhhhhcc---------------------cc-hhHHHHHHHHH
Q 008231          173 FGSDQFDTSDPKEEKAMIFFFNRFYFAISIGSLFAVIVLVYVQDN---------------------VG-RGWGYGISAGT  230 (573)
Q Consensus       173 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~~~~~l~~~---------------------~g-~~~~f~~~~~~  230 (573)
                      |+-|..+++.      -+...|+.+....+|.++|.++++.+...                     .| |..-|.+.++.
T Consensus       165 YiDDnv~~~~------splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~  238 (539)
T PF03137_consen  165 YIDDNVSKKN------SPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGIL  238 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             eecccccccc------CccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHH
Confidence            9999999988      88999999999999999999988876531                     12 55556555555


Q ss_pred             HHHHHHHHHhcCcccc
Q 008231          231 MVVAAAILLIGTPWYR  246 (573)
Q Consensus       231 ~~~~~~~~~~~~~~~~  246 (573)
                      .++..+-++.++++.+
T Consensus       239 ~~l~aipl~~FPk~lp  254 (539)
T PF03137_consen  239 LFLSAIPLFFFPKKLP  254 (539)
T ss_dssp             ----------------
T ss_pred             HHHHHHHHHcCCccCC
Confidence            5555544444444433

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>TIGR00896 CynX cyanate transporter

Probab=99.04  E-value=4.3e-09  Score=109.12  Aligned_cols=156  Identities=13%  Similarity=-0.060  Sum_probs=117.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHH
Q 008231           33 LAAGLILGTELSERICAMGISMNLVTYLVGDLHLSSAKSATIVTNFMGTLNLLGLLGGFLADAKLGRYLTVAIFASVTAL  112 (573)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~  112 (573)
                      +..+......++....+++...++|.|+++ .|++..+.+.+.+.+.++..++.++.|+++||+.+||+.+.++..+.++
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~-~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~  275 (355)
T TIGR00896       197 PLAWQVTVFFGLQSGLYYSLIGWLPAILIS-HGASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLV  275 (355)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHH
Confidence            445555555566667778888899999875 7999999999999999999999999999999983456677777777777


Q ss_pred             HHHHHHhhccCCCCCCCCCccccccccccccchhhHHHHHHHHHHHHHhcCccccccccccccCCCCCCCchHHHhHHHH
Q 008231          113 VVGLLTSATSIPSMRPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKAMIFF  192 (573)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~  192 (573)
                      +..++.+..+                        ..  .. ...++.|++.+...+...+.+.+..++++     .++..
T Consensus       276 ~~~~~~~~~~------------------------~~--~~-~~~~l~g~~~g~~~~~~~~~~~~~~~~~~-----~~g~~  323 (355)
T TIGR00896       276 GLCGLLFAPM------------------------HG--LW-AWALVLGLGQGGAFPLALTLIGLRSRQAA-----QAAAL  323 (355)
T ss_pred             HHHHHHHhhh------------------------hH--HH-HHHHHHHHhhhhHhHHHHHHHHHhccCHH-----HHHHH
Confidence            7766655321                        11  11 13457789998888877776665554332     17888


Q ss_pred             HHHHHHHHHhhhHHHHHHhhhhhcccc-hh
Q 008231          193 FNRFYFAISIGSLFAVIVLVYVQDNVG-RG  221 (573)
Q Consensus       193 ~~~~~~~~~ig~~~~~~~~~~l~~~~g-~~  221 (573)
                      .++.+...++|..++|.+.|++.+..| |.
T Consensus       324 ~~~~~~~~~~~~~~gp~~~G~l~~~~g~~~  353 (355)
T TIGR00896       324 SAMAQSIGYLLAALGPLFVGVLHDISGNWL  353 (355)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence            898888889999999999999998776 44

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=99.04  E-value=1.8e-08  Score=104.82  Aligned_cols=140  Identities=16%  Similarity=0.289  Sum_probs=103.4

Q ss_pred             cccchhhHHHHHHHHHhhhhhhhhhhcccccccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCcccchhHHH
Q 008231          374 GSLSAFLFITILLFTSLNEKVFVPLARKITHSIQGMTSLQRVGTGLIFSVIAMIVSAVIEQQRRETSVQKHIQISAFWLV  453 (573)
Q Consensus       374 ~~~~~~~~~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~lv  453 (573)
                      +...+.+-.+-+++-++..+++    +|..       +.+.+..|+.+..+-++.+..+.              +.|..+
T Consensus       409 Gv~~a~~~~gEI~~~ffs~klI----~kiG-------Hv~v~~lgLa~~~~Rf~~~S~L~--------------n~W~vL  463 (618)
T KOG3762|consen  409 GVVSALCHAGEILFYFFSFKLI----EKIG-------HVNVMYLGLACNVGRFLYYSYLQ--------------NPWMVL  463 (618)
T ss_pred             eehhhhhccchHHHHHHHHHHH----HHhc-------ccceeeehhhHHHHHHHHHHHhc--------------Cchhee
Confidence            3445556566666666666665    4432       23347788888888888777763              567778


Q ss_pred             HHHHHHHHHHHhhhhhhhheeecccCchhHHHHHHHHH-HHHHHHHHHHHHHHHHHhhhhccCccccccccchhhHHHHH
Q 008231          454 PQYFLVGAGEAFVYVGQLEFFIREGPERMKSMSTGLFL-SAISMGMFVSSMLVSIVDKITNKHWLRSNLNKGKLNNFYWL  532 (573)
Q Consensus       454 ~~~~l~g~~~~~~~~~~~~~~~~~~p~~~rg~~~gi~~-~~~~lg~~ig~~~~~~i~~~~~~~w~~~~~~~~~~~~~~~~  532 (573)
                      +.-++.|+..+.++....+|++..+|++.+++++++.. ....+|-.+|++++|.+.+..            +....|+.
T Consensus       464 Pieilqgit~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~f------------g~~ttf~~  531 (618)
T KOG3762|consen  464 PIEILQGITHALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERF------------GARTTFRI  531 (618)
T ss_pred             eHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheee------------hhHHHHHH
Confidence            88899999999999999999999999999999999987 557888889999988876532            23356777


Q ss_pred             HHHHHHHHHHHHHHHHhh
Q 008231          533 LAVLGLLNFMVFLFFAMK  550 (573)
Q Consensus       533 ~a~~~~l~~~~~~~~~~~  550 (573)
                      +++.+++..+.+...-+.
T Consensus       532 ~giAcl~~l~~~~~iq~~  549 (618)
T KOG3762|consen  532 FGIACLVTLALFISIQLL  549 (618)
T ss_pred             HHHHHHHHHHHHHHhhhh
Confidence            777777776666554443

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.03  E-value=2.1e-09  Score=116.29  Aligned_cols=157  Identities=11%  Similarity=-0.013  Sum_probs=128.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHH
Q 008231           33 LAAGLILGTELSERICAMGISMNLVTYLVGDLHLSSAKSATIVTNFMGTLNLLGLLGGFLADAKLGRYLTVAIFASVTAL  112 (573)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~  112 (573)
                      +.++......++..+.+++...++|.|+++.+|.+..+.+++.....++..++.++.|++.||+ |||+.+.++..+.++
T Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~~~~g~~~~~~  333 (485)
T TIGR00711       255 RNFTIGCVYMSLLGLGLYGSFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDKI-DPRKLVTIGLILYAV  333 (485)
T ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CcHHHHHHHHHHHHH
Confidence            3455566667777778888888999999999999999999999999999999999999999998 999999999888888


Q ss_pred             HHHHHHhhccCCCCCCCCCccccccccccccchhhHHHHHHHHHHHHHhcCccccccccccccCCCCCCCchHHHhHHHH
Q 008231          113 VVGLLTSATSIPSMRPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKAMIFF  192 (573)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~  192 (573)
                      +..++.+... +                     ..+.+.+....++.|+|.+...+.......+..|+++      |+.+
T Consensus       334 ~~~~~~~~~~-~---------------------~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~------~g~~  385 (485)
T TIGR00711       334 GFYWRAFTFT-P---------------------DTPFLAIALPQFIRGFGMGCFFMPLTTIALSGLPPHK------IARG  385 (485)
T ss_pred             HHHHHhccCC-C---------------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH------HhHH
Confidence            8777663211 0                     0134455566778899988877777777778888877      9999


Q ss_pred             HHHHHHHHHhhhHHHHHHhhhhhccc
Q 008231          193 FNRFYFAISIGSLFAVIVLVYVQDNV  218 (573)
Q Consensus       193 ~~~~~~~~~ig~~~~~~~~~~l~~~~  218 (573)
                      .++++...++|+.+|+.+.+.+.+..
T Consensus       386 ~~~~~~~~~~g~~ig~~i~g~~~~~~  411 (485)
T TIGR00711       386 SSLSNFTRQLGGSIGTALITTILTNR  411 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999887643

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.02  E-value=9.4e-09  Score=111.09  Aligned_cols=158  Identities=15%  Similarity=-0.048  Sum_probs=111.8

Q ss_pred             HHHhhhcCCCchhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCcccccc
Q 008231           58 TYLVGDLHLSSAKSATIVTNFMGTLNLLGLLGGFLADAKLGRYLTVAIFASVTALVVGLLTSATSIPSMRPPQCDDYRRK  137 (573)
Q Consensus        58 ~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (573)
                      +++.++.|.+..+..+......+...++.+++|+++||+ |||+.++.+..+.+++.++++.......            
T Consensus       295 p~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~-g~r~~~i~~~~~~~v~~~~l~~~~~~~~------------  361 (479)
T PRK10077        295 PEIFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKF-GRKPLQIIGALGMAIGMFSLGTAFYTQA------------  361 (479)
T ss_pred             HHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHh-cChHHHHHhHHHHHHHHHHHHHHHhcCc------------
Confidence            344457898888777777778888899999999999998 9999999999988888777764321000            


Q ss_pred             ccccccchhhHHHHHHHHHHHHHhcCcc-ccccccccccCCCCCCCchHHHhHHHHHHHHHHHHHhhhHHHHHHhhh---
Q 008231          138 HHQCIEANGKQLAMLYAALYTIALGGGG-IKSNVSGFGSDQFDTSDPKEEKAMIFFFNRFYFAISIGSLFAVIVLVY---  213 (573)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~l~g~g~~~-~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~~~~~---  213 (573)
                               ... ....+..+.+.+.+. ..|....+++|.+|+++      |++++++.+...++|.++++.+.+.   
T Consensus       362 ---------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~------r~~~~g~~~~~~~~g~~~~~~~~p~~~~  425 (479)
T PRK10077        362 ---------PGI-VALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAI------RGKALAIAVAAQWIANYFVSWTFPMMDK  425 (479)
T ss_pred             ---------ccH-HHHHHHHHHHHHHhccccchhHHHhHhhCChhH------HHHHHHHHHHHHHHHHHHHHHHhHHHHh
Confidence                     111 122233333333332 34677899999999888      9999999999888888888665544   


Q ss_pred             ---hhcccchhHHHHHHHHHHHHHHHHHHhcCcc
Q 008231          214 ---VQDNVGRGWGYGISAGTMVVAAAILLIGTPW  244 (573)
Q Consensus       214 ---l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~  244 (573)
                         +.+.++|++.|++.++..+++.+..++..|+
T Consensus       426 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e  459 (479)
T PRK10077        426 NSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPE  459 (479)
T ss_pred             ccchhhhccCccHHHHHHHHHHHHHHHHHhcccc
Confidence               4457788888888776666665554444443

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.01  E-value=5.4e-09  Score=113.81  Aligned_cols=174  Identities=13%  Similarity=0.022  Sum_probs=111.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhcCCCchhhhH------------HHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHH
Q 008231           41 TELSERICAMGISMNLVTYLVGDLHLSSAKSAT------------IVTNFMGTLNLLGLLGGFLADAKLGRYLTVAIFAS  108 (573)
Q Consensus        41 ~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~------------~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~  108 (573)
                      ..+...+.+|++..+.|.+++ +.|++..+.+.            ...+..++..++.+++++++||+ |||++++++..
T Consensus       296 ~~~~~~~~~y~~~~~~p~i~~-~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~-gRR~~l~~~~~  373 (502)
T TIGR00887       296 SWFLLDIAFYGVNLNQKVILS-AIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDII-GRKPIQLMGFF  373 (502)
T ss_pred             HHHHHHHHHHccccccHHHHH-HHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-cchhHHHHHHH
Confidence            344455677888777888875 67887553321            12223344556778889999998 99999988887


Q ss_pred             HHHHHHHHHHhhccCCCCCCCCCccccccccccccchhhHHHHHHHHHHHHHhcCccccccccccccCCCCCCCchHHHh
Q 008231          109 VTALVVGLLTSATSIPSMRPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKA  188 (573)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (573)
                      +.+++..+..+.....                    . .+ ..+....+....+..+..+....+.+|.+|++.      
T Consensus       374 ~~~~~~~~l~~~~~~~--------------------~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~------  425 (502)
T TIGR00887       374 ILTVLFFVLGFAYNHL--------------------S-TH-GFLAIYVLAQFFANFGPNATTFIVPGEVFPTRY------  425 (502)
T ss_pred             HHHHHHHHHHHHHHhc--------------------c-hh-HHHHHHHHHHHHHhcCCCchhhhhhhccCchhH------
Confidence            7777766555432100                    0 01 111111111222222334556677899999999      


Q ss_pred             HHHHHHHHHHHHHhhhHHHHHHhhhhhcc----------cchhHHHHHHHHHHHHHHHHHHhcCccc
Q 008231          189 MIFFFNRFYFAISIGSLFAVIVLVYVQDN----------VGRGWGYGISAGTMVVAAAILLIGTPWY  245 (573)
Q Consensus       189 r~~~~~~~~~~~~ig~~~~~~~~~~l~~~----------~g~~~~f~~~~~~~~~~~~~~~~~~~~~  245 (573)
                      |+++.++.+....+|++++|.+.+++.+.          .++...|++.++..+++.+.+ +..||.
T Consensus       426 R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~-~~lpEt  491 (502)
T TIGR00887       426 RSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIFALFMFLGILFT-LLIPET  491 (502)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHhhhhhccccccccccccccchHHHHHHHHHHHHHHHHh-eEeccC
Confidence            99999999999999999999999998873          344556776666655554443 344543

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>PRK10054 putative transporter; Provisional

Probab=99.00  E-value=3.6e-09  Score=111.55  Aligned_cols=171  Identities=9%  Similarity=-0.064  Sum_probs=126.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hcCCCchhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHH
Q 008231           34 AAGLILGTELSERICAMGISMNLVTYLVG--DLHLSSAKSATIVTNFMGTLNLLGLLGGFLADAKLGRYLTVAIFASVTA  111 (573)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~--~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~  111 (573)
                      .++......++..+.+.....+.+.|+..  +.+.+....+.+.+..........++.|++.||+ ++|+.+..++.+..
T Consensus       207 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~l~~~~~~~~  285 (395)
T PRK10054        207 ALLWFTCSGFLASFVSGAFASCISQYVMVVADSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAA-NIRPLMTAGTLCFV  285 (395)
T ss_pred             eehHHHHHHHHHHHHHHHhhhhHHHHHHHhcccchHHHHHHHHHHhhhhheeeehhHHHHHHccC-CchhHHHHHHHHHH
Confidence            44444444555555554455566666653  4455666777777777777777788889999998 99999999988888


Q ss_pred             HHHHHHHhhccCCCCCCCCCccccccccccccchhhHHHHHHHHHHHHHhcCccccccccccccCCCCCCCchHHHhHHH
Q 008231          112 LVVGLLTSATSIPSMRPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKAMIF  191 (573)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~  191 (573)
                      ++..+..++.                         .+.+.+.++..+.++|.+...|...+++.+..|++.      |++
T Consensus       286 ~~~~~~~~~~-------------------------~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~p~~~------~~~  334 (395)
T PRK10054        286 IGLVGFIFSG-------------------------NSLLLWGMSAAVFTVGEIIYAPGEYMLIDHIAPPGM------KAS  334 (395)
T ss_pred             HHHHHHHHcc-------------------------hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCccc------cee
Confidence            8776666532                         245566677788999988888888888999999887      888


Q ss_pred             HHHHHHHHHHhhhHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHH
Q 008231          192 FFNRFYFAISIGSLFAVIVLVYVQDNVGRGWGYGISAGTMVVAAAI  237 (573)
Q Consensus       192 ~~~~~~~~~~ig~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~  237 (573)
                      .++..+ ...+|..+||.++|++.+..|....|++.+.+..+++++
T Consensus       335 ~~~~~~-~~~~G~~~Gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~  379 (395)
T PRK10054        335 YFSAQS-LGWLGAAINPLVSGVILTTLPPWSLFVILALAIVAAWLL  379 (395)
T ss_pred             hHhHHH-HHHHHHHHHHHHHHHHHHHcChhhHHHHHHHHHHHHHHH
Confidence            888765 566999999999999999999888887765555444443

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=98.99  E-value=3.9e-09  Score=114.71  Aligned_cols=154  Identities=11%  Similarity=0.003  Sum_probs=128.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHH
Q 008231           33 LAAGLILGTELSERICAMGISMNLVTYLVGDLHLSSAKSATIVTNFMGTLNLLGLLGGFLADAKLGRYLTVAIFASVTAL  112 (573)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~  112 (573)
                      |.+.......++....+++...++|.|+++.+|.|..+++.....+.++..++.++.|++.||+ |+|+.+..+..+.++
T Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~g~~~~~~  337 (495)
T PRK14995        259 RIILSGVVMAMTAMITLVGFELLMAQELQFVHGLSPLEAGMFMLPVMVASGFSGPIAGILVSRL-GLRLVATGGMALSAL  337 (495)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchHHHHHHHHHHHH
Confidence            3455566666677777778888899999999999999999999999999999999999999998 999999989888888


Q ss_pred             HHHHHHhhccCCCCCCCCCccccccccccccchhhHHHHHHHHHHHHHhcCccccccccccccCCCCCCCchHHHhHHHH
Q 008231          113 VVGLLTSATSIPSMRPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKAMIFF  192 (573)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~  192 (573)
                      +..++.+... .                      .+.+...+..++.|+|.|...+.......+..|+++      ++.+
T Consensus       338 ~~~~l~~~~~-~----------------------~~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~------~g~~  388 (495)
T PRK14995        338 SFYGLAMTDF-S----------------------TQQWQAWGLMALLGFSAASALLASTSAIMAAAPPEK------AAAA  388 (495)
T ss_pred             HHHHHHHhcC-C----------------------CchHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCHHh------cchH
Confidence            7766654321 0                      133445567788899999988888888888889888      9999


Q ss_pred             HHHHHHHHHhhhHHHHHHhhhhhc
Q 008231          193 FNRFYFAISIGSLFAVIVLVYVQD  216 (573)
Q Consensus       193 ~~~~~~~~~ig~~~~~~~~~~l~~  216 (573)
                      .++++...++|..+|+.+.+.+.+
T Consensus       389 ~~~~~~~~~lG~~~G~ai~g~i~~  412 (495)
T PRK14995        389 GAIETMAYELGAGLGIAIFGLLLS  412 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999998865

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=98.99  E-value=2.1e-08  Score=105.67  Aligned_cols=168  Identities=8%  Similarity=-0.076  Sum_probs=120.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHH
Q 008231           33 LAAGLILGTELSERICAMGISMNLVTYLVGDLHLSSAKSATIVTNFMGTLNLLGLLGGFLADAKLGRYLTVAIFASVTAL  112 (573)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~  112 (573)
                      +.++..+...++....+++...++++++.+++|++..+.+.+...+.++..++.++.|++.||. +|+..+.........
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~-~~~~l~~~~~~~~~~  294 (394)
T PRK10213        216 PGVMAGMIAIFMSFAGQFAFFTYIRPVYMNLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRS-VKLALAGAPLVLAVS  294 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhcc-chhHHHHHHHHHHHH
Confidence            3445554445555556666666765555668899999999999999999999999999999996 554444433332333


Q ss_pred             HHHHHHhhccCCCCCCCCCccccccccccccchhhHHHHHHHHHHHHHhcCccccccccccccCCCCCCCchHHHhHHHH
Q 008231          113 VVGLLTSATSIPSMRPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKAMIFF  192 (573)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~  192 (573)
                      ...+....                          .+.+.+.+..++.|++.+...+...+++.+..|+ +      +++.
T Consensus       295 ~~~l~~~~--------------------------~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~-~------~~~~  341 (394)
T PRK10213        295 ALVLTLWG--------------------------SDKIVATGVAIIWGLTFALVPVGWSTWITRSLAD-Q------AEKA  341 (394)
T ss_pred             HHHHHHHh--------------------------hhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHCcc-c------HHHH
Confidence            33333322                          2455666777888999998888888888888773 3      5666


Q ss_pred             HHHHHHHHHhhhHHHHHHhhhhhcccchhHHHHHHHHHHHHH
Q 008231          193 FNRFYFAISIGSLFAVIVLVYVQDNVGRGWGYGISAGTMVVA  234 (573)
Q Consensus       193 ~~~~~~~~~ig~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~  234 (573)
                      .+.+....++|..+||.++|++.+..|++..+...++..++.
T Consensus       342 ~~~~~~~~~lg~~~G~~l~G~l~~~~g~~~~~~~~~~~~~~~  383 (394)
T PRK10213        342 GSIQVAVIQLANTCGAAIGGYALDNIGLTSPLMLSGTLMLLT  383 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccChhhHHHHHHHHHHHH
Confidence            777777889999999999999999999888887766544433

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.99  E-value=5.2e-07  Score=94.67  Aligned_cols=103  Identities=12%  Similarity=0.051  Sum_probs=85.7

Q ss_pred             HHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCccccccccccccchhhHHHHHHH
Q 008231           75 VTNFMGTLNLLGLLGGFLADAKLGRYLTVAIFASVTALVVGLLTSATSIPSMRPPQCDDYRRKHHQCIEANGKQLAMLYA  154 (573)
Q Consensus        75 ~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (573)
                      .++......+.+++++.+.|+. |.|+.+.++...+....+..-+                           .|-+.++.
T Consensus        56 ~aiiY~~ftv~~l~~psiv~~i-~~K~~lv~ga~~y~~f~~gfl~---------------------------~N~y~~yf  107 (461)
T KOG3098|consen   56 QAIIYAFFTVSCLFAPSIVNFL-GPKWALVIGATCYAAFPLGFLF---------------------------PNSYYLYF  107 (461)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHh-hHHHHHHHHhHHHHHHHHHHHh---------------------------cchHHHHH
Confidence            5667778889999999999998 9999999999988877666655                           36678899


Q ss_pred             HHHHHHhcCccccccccccccCCCCCCCchHHHhHHHHHHHHHHHHHhhhHHHHHHh
Q 008231          155 ALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKAMIFFFNRFYFAISIGSLFAVIVL  211 (573)
Q Consensus       155 ~~~l~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~~~  211 (573)
                      +-++.|+|.+..+.....++++..+++.      +.+..++.......+.++|.++.
T Consensus       108 ssallG~Gaallw~GqG~ylt~~st~~t------ie~Nisi~Wai~~~~li~Ggi~l  158 (461)
T KOG3098|consen  108 SSALLGFGAALLWTGQGGYLTSNSTRET------IERNISIFWAIGQSSLIIGGIIL  158 (461)
T ss_pred             HHHHhhhhHHheecccceehhhcCChhh------HHHHHHHHHHHHHHHHHhhhHhh
Confidence            9999999999999999999999988877      88888887666777776664443

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=98.96  E-value=1.1e-08  Score=106.91  Aligned_cols=162  Identities=10%  Similarity=-0.003  Sum_probs=115.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHH
Q 008231           34 AAGLILGTELSERICAMGISMNLVTYLVGDLHLSSAKSATIVTNFMGTLNLLGLLGGFLADAKLGRYLTVAIFASVTALV  113 (573)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~  113 (573)
                      ..+...+...+....++....+.|.|+++++|.++.+.+.+.+...++..++.++.|++.||+ |||+.+..+..+..++
T Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~-~~~~~~~~~~~~~~~~  285 (385)
T TIGR00710       207 MFWGYALIYGASFGGFFAFFSGAPFVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKW-GAKSLLRMGLILFAVS  285 (385)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHcChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHH
Confidence            344444444455556666777788899989999999999999999999999999999999998 9999998888777777


Q ss_pred             HHHHHhhccCCCCCCCCCccccccccccccchhhHHHHHHHHHHHHHhcCccccccccccccCCCCCCCchHHHhHHHHH
Q 008231          114 VGLLTSATSIPSMRPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKAMIFFF  193 (573)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  193 (573)
                      ..++.......                     ......++...++.|++.+...+.......|..| ++      |+++.
T Consensus       286 ~~~~~~~~~~~---------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~------~g~~~  337 (385)
T TIGR00710       286 AVLLEITAILG---------------------LGSWAMIIGPMMFVGIGNSMISSIAMAYALEDFP-HV------AGTAS  337 (385)
T ss_pred             HHHHHHHHHhc---------------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-cc------chHHH
Confidence            66665432100                     0123344555667888888888888888888776 45      89999


Q ss_pred             HHHHHHHH-hhhHHHHHHhhhhhcccchhHHHH
Q 008231          194 NRFYFAIS-IGSLFAVIVLVYVQDNVGRGWGYG  225 (573)
Q Consensus       194 ~~~~~~~~-ig~~~~~~~~~~l~~~~g~~~~f~  225 (573)
                      ++.+.... +|++.+|+ .+.+.+..+|...+.
T Consensus       338 ~~~~~~~~~~g~i~~~~-~~~~~~~~~~~~~~~  369 (385)
T TIGR00710       338 ALFGTLRLVLGAIVGYL-VSLIHGNTAWPMSLS  369 (385)
T ss_pred             HHHHHHHHHHHHHHHHH-HHhccccChHHHHHH
Confidence            98776665 45555554 455555445544443

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=98.95  E-value=1.3e-08  Score=121.98  Aligned_cols=164  Identities=14%  Similarity=0.044  Sum_probs=130.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCch-hhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHH
Q 008231           33 LAAGLILGTELSERICAMGISMNLVTYLVGDLHLSSA-KSATIVTNFMGTLNLLGLLGGFLADAKLGRYLTVAIFASVTA  111 (573)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~-~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~  111 (573)
                      +.++..++..++.....+.+..+++.|+.+.+|++.. +.+++.+...++..++.++.|+++||+ ++++++.++.++.+
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~-~~~~~~~~~~~~~~  310 (1146)
T PRK08633        232 RVLWLAIIGLSYFWFISQLAQANFPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRH-IELGLVPLGALGLA  310 (1146)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCc-eEccchhHHHHHHH
Confidence            3445555555555555566777889999999999999 999999999999999999999999998 99999888888777


Q ss_pred             HHHHHHHhhccCCCCCCCCCccccccccccccchhhHHHHHHHHHHHHHhcCccccccccccccCCCCCCCchHHHhHHH
Q 008231          112 LVVGLLTSATSIPSMRPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKAMIF  191 (573)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~  191 (573)
                      ++.+++.+.                          .+.+.+++..++.|++.++..+...+++.+..|++.      |++
T Consensus       311 ~~~~~~~~~--------------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------rg~  358 (1146)
T PRK08633        311 LSLFLLPTA--------------------------PSLASVLVLFFLFGFSAGLFIVPLNALIQFRAPEKE------LGK  358 (1146)
T ss_pred             HHHHHHHHh--------------------------hhHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCccc------hhh
Confidence            777666654                          245566777888999999988888999999999998      999


Q ss_pred             HHHHHHHHHHhhhHHHHHHhhhhhc-ccchhHHHHHHHH
Q 008231          192 FFNRFYFAISIGSLFAVIVLVYVQD-NVGRGWGYGISAG  229 (573)
Q Consensus       192 ~~~~~~~~~~ig~~~~~~~~~~l~~-~~g~~~~f~~~~~  229 (573)
                      ++++.++..++|.++++.+++.+.. .+++...|++.+.
T Consensus       359 ~~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~~~~~~~~  397 (1146)
T PRK08633        359 VLAANNFLQNVGMLLFLALTTLFSGLGLSPAGLFYLIAL  397 (1146)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence            9999999999999888888776653 2345555554443

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=98.94  E-value=7.2e-09  Score=105.39  Aligned_cols=171  Identities=13%  Similarity=0.059  Sum_probs=137.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHH
Q 008231           34 AAGLILGTELSERICAMGISMNLVTYLVGDLHLSSAKSATIVTNFMGTLNLLGLLGGFLADAKLGRYLTVAIFASVTALV  113 (573)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~  113 (573)
                      .+..-++..++-+=+.-++......|-..++|++..+...+-...++...++++++|+|.||+ |-|+++.+++++..+.
T Consensus       253 ~i~~FLiA~~~~~DGv~til~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rf-g~k~vl~~~lvi~~~~  331 (438)
T COG2270         253 NLVLFLIARFFYIDGVNTILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERF-GSKPVLMIGLVILSIA  331 (438)
T ss_pred             chHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCceeehHHHHHHHHH
Confidence            555556666655555557888888999999999999999999999999999999999999998 9999999999887777


Q ss_pred             HHHHHhhccCCCCCCCCCccccccccccccchhhHHHHHHHHHHHHHhcCccccccccccccCCCCCCCchHHHhHHHHH
Q 008231          114 VGLLTSATSIPSMRPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKAMIFFF  193 (573)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  193 (573)
                      ++...+..                          ....+++.-.+.|+..|..++..-++.++..|+++      -++.|
T Consensus       332 ~~~~~~~~--------------------------~~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k------~~~fF  379 (438)
T COG2270         332 ALYLIFLE--------------------------GELDFWILGLLVGTSLGGAQASSRSYLARLVPKGK------EGRFF  379 (438)
T ss_pred             HHHHHHcc--------------------------ccHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCcc------cccee
Confidence            66665532                          22345555567899999999999999999999998      89999


Q ss_pred             HHHHHHHHhhhHHHHHHhhhhhcccc-hhHHHHHHHHHHHHHHHH
Q 008231          194 NRFYFAISIGSLFAVIVLVYVQDNVG-RGWGYGISAGTMVVAAAI  237 (573)
Q Consensus       194 ~~~~~~~~ig~~~~~~~~~~l~~~~g-~~~~f~~~~~~~~~~~~~  237 (573)
                      |+++.....++.+||.+.+.+.+..| -|..+....+..+++++.
T Consensus       380 glyaltgra~S~~gp~lv~v~t~iTg~~r~g~~~i~vll~iGl~~  424 (438)
T COG2270         380 GLYALTGRAASFLGPFLVAVITQITGSSRAGVLSIIVLLLIGLLL  424 (438)
T ss_pred             ehhhhhhhHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhHhh
Confidence            99999999999999999999988766 455554444444444443

>PRK10133 L-fucose transporter; Provisional

Probab=98.94  E-value=1.5e-08  Score=108.19  Aligned_cols=164  Identities=13%  Similarity=0.011  Sum_probs=122.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-hhhcCCCchhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHH
Q 008231           36 GLILGTELSERICAMGISMNLVTYL-VGDLHLSSAKSATIVTNFMGTLNLLGLLGGFLADAKLGRYLTVAIFASVTALVV  114 (573)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~l~~yl-~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~  114 (573)
                      +......++.....++...+++.|+ ++.+|+++.+.+.....+.++..++.+++|++.||+ |||+++..+..+.+++.
T Consensus       261 ~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~-g~~~~l~~~~~~~~~~~  339 (438)
T PRK10133        261 RWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRF-APHKVLAAYALIAMALC  339 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CHHHHHHHHHHHHHHHH
Confidence            3344444555566666677888886 567899999999999999999999999999999998 99999988877766665


Q ss_pred             HHHHhhccCCCCCCCCCccccccccccccchhhHHHHHHHHHHHHHhcCccccccccccccCCCCCCCchHHHhHHHHHH
Q 008231          115 GLLTSATSIPSMRPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKAMIFFFN  194 (573)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  194 (573)
                      .+..+..                          +. ..+....+.|+|.+...|+..+...+.+|++       .+.+.+
T Consensus       340 ~~~~~~~--------------------------~~-~~~~~~~l~glg~~~i~P~~~s~a~~~~~~~-------~~~as~  385 (438)
T PRK10133        340 LISAFAG--------------------------GH-VGLIALTLCSAFMSIQYPTIFSLGIKNLGQD-------TKYGSS  385 (438)
T ss_pred             HHHHHcC--------------------------Ch-HHHHHHHHHHHHHHHHHHHHHHHHHcccchh-------hccchh
Confidence            5544431                          11 1234556789999999999999999987753       344555


Q ss_pred             HHHHHHHhhhHHHHHHhhhhhcccc-hhHHHHHHHHHHHHHH
Q 008231          195 RFYFAISIGSLFAVIVLVYVQDNVG-RGWGYGISAGTMVVAA  235 (573)
Q Consensus       195 ~~~~~~~ig~~~~~~~~~~l~~~~g-~~~~f~~~~~~~~~~~  235 (573)
                      +... ..+|+.++|.+.|++.+..| -+..|++..+..+...
T Consensus       386 l~~~-~~~g~~~~~~i~G~l~~~~g~~~~~~~v~~~~~~~~~  426 (438)
T PRK10133        386 FIVM-TIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIF  426 (438)
T ss_pred             HHhH-HhccchHHHHHHHHHHHhccchHHHHHHHHHHHHHHH
Confidence            5443 34688889999999999887 7888887666544433

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=98.93  E-value=3.7e-08  Score=104.42  Aligned_cols=182  Identities=13%  Similarity=0.024  Sum_probs=123.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHH
Q 008231           33 LAAGLILGTELSERICAMGISMNLVTYLVGDLHLSSAKSATIVTNFMGTLNLLGLLGGFLADAKLGRYLTVAIFASVTAL  112 (573)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~  112 (573)
                      +..|.+++..++..-.|.+...++|.|+++.+.  .........+..+...+..+++|+++||+ |+||++.++..+..+
T Consensus       252 ~~~Wllslly~~tFG~fvg~s~~lp~~~~~~~~--~~~~l~~~~l~~l~~~l~rplgG~LADRi-G~~~vl~~~~i~~~i  328 (462)
T PRK15034        252 LHLWLLSLLYLATFGSFIGFSAGFAMLAKTQFP--DVNILRLAFFGPFIGAIARSVGGAISDKF-GGVRVTLINFIFMAI  328 (462)
T ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--hHHHHHHHHHHHHHHHHHHHhhHHHHHhc-CchHHHHHHHHHHHH
Confidence            456888887777777777777789999887653  33333334445778889999999999998 999999998887777


Q ss_pred             HHHHHHhhccCCCCCCCCCccccccccccccchhhHHHHHHHHHHHHHhcCccccccccccccCCCCCCC----------
Q 008231          113 VVGLLTSATSIPSMRPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSD----------  182 (573)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~----------  182 (573)
                      +........  |..                  ...+++.+.++.+...++.|.-+.....++.+++|++.          
T Consensus       329 ~~~~~~l~l--p~~------------------~~~~~~~~~~~~~~l~~~~G~gngsvfk~ip~~f~~~~~~~~~~~~~~  388 (462)
T PRK15034        329 FSALLFLTL--PGT------------------GSGNFIAFYAVFMGLFLTAGLGSGSTFQMIAVIFRQITIYRVKMKGGS  388 (462)
T ss_pred             HHHHHHHHh--ccc------------------cccHHHHHHHHHHHHHHHhcccchHHHHhhHHHHhhhhhhcccccccc
Confidence            664433321  100                  00245555555555556666666667778888777410          


Q ss_pred             -----chHHHhHHHHHHHHHHHHHhhhHHHHHHhhhhhcccc-hhHHHHHHHHHHHHHHHH
Q 008231          183 -----PKEEKAMIFFFNRFYFAISIGSLFAVIVLVYVQDNVG-RGWGYGISAGTMVVAAAI  237 (573)
Q Consensus       183 -----~~~~~~r~~~~~~~~~~~~ig~~~~~~~~~~l~~~~g-~~~~f~~~~~~~~~~~~~  237 (573)
                           ...+++-+.+.|+......+|+++-|.+.|...+..| +...|++..+..++..++
T Consensus       389 ~~~~~~~~~~~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~  449 (462)
T PRK15034        389 DEQAQREAVTETAAALGFISAIGAVGGFFIPQAFGMSLNMTGSPVGAMKVFLIFYIVCVLL  449 (462)
T ss_pred             hhHHhhHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHH
Confidence                 0112237788888889999999999988887776655 777787776665554443

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=98.92  E-value=2.2e-08  Score=105.80  Aligned_cols=151  Identities=7%  Similarity=-0.056  Sum_probs=109.9

Q ss_pred             HHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHhhccCCCCCCCCC
Q 008231           52 ISMNLVTYLVGDLHLSSAKSATIVTNFMGTLNLLGLLGGFLADAKLGRYLTVAIFASVTALVVGLLTSATSIPSMRPPQC  131 (573)
Q Consensus        52 ~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  131 (573)
                      ...++|.|+++..+ ++.+.+++.+...+....+..+.+++.||..+.++.+..+..+.+++..+++++.          
T Consensus       227 ~~~~~p~~~~~~~~-~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~----------  295 (400)
T PRK11646        227 VMLMLPIMVNDIAG-SPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMVS----------  295 (400)
T ss_pred             HHHhhhhhHHhhcC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhh----------
Confidence            44567888876655 7788888887777766655555566666532667777777777777776666542          


Q ss_pred             ccccccccccccchhhHHHHHHHHHHHHHhcCccccccccccccCCCCCCCchHHHhHHHHHHHHHHHHHhhhHHHHHHh
Q 008231          132 DDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKAMIFFFNRFYFAISIGSLFAVIVL  211 (573)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~~~  211 (573)
                                      +.+.+.+...+.+++.+...|...+++.+..|+++      |++++++++...++|..+||.++
T Consensus       296 ----------------~~~~~~~~~~l~~~g~~~~~p~~~~~~~~~~p~~~------~g~~~g~~~~~~~~g~~ig~~l~  353 (400)
T PRK11646        296 ----------------NLQQLFTLICLFYIGSIIAEPARETLSASLADARA------RGSYMGFSRLGLALGGAIGYIGG  353 (400)
T ss_pred             ----------------hHHHHHHHHHHHHHHHHHHHccHHHHHHhcCCccc------chhhhhHHHHHHHHHHHhcccch
Confidence                            34455566677888888888888999999999988      99999999999999999999999


Q ss_pred             hhhhccc---c-hhHHHHHHHHHHHHHH
Q 008231          212 VYVQDNV---G-RGWGYGISAGTMVVAA  235 (573)
Q Consensus       212 ~~l~~~~---g-~~~~f~~~~~~~~~~~  235 (573)
                      |++.+..   + ...++++..+..++..
T Consensus       354 G~l~~~~~~~~~~~~~~~~~~~~~~~~~  381 (400)
T PRK11646        354 GWLFDLGKALNQPELPWMMLGIIGLITL  381 (400)
T ss_pred             HHHHHHHhhcCCcchHHHHHHHHHHHHH
Confidence            9998764   2 2344544444444433

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=98.91  E-value=3.2e-09  Score=109.29  Aligned_cols=144  Identities=20%  Similarity=0.082  Sum_probs=118.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC-chhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHH
Q 008231           35 AGLILGTELSERICAMGISMNLVTYLVGDLHLS-SAKSATIVTNFMGTLNLLGLLGGFLADAKLGRYLTVAIFASVTALV  113 (573)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s-~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~  113 (573)
                      +|......+.....++....++|.|+.+.+|++ ..+.+.+.+...+...++.++.|+++||+ |+|+...+......++
T Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~  286 (352)
T PF07690_consen  208 LWILLIAFFLFFFVFSGFSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRF-GRRRRLLIAILLLILG  286 (352)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHH
T ss_pred             hhhhhhhhhHHHHHHHHhhcccchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CcHHHHHHHHHHHHHH
Confidence            344555555556677778889999999999999 79999999999999999999999999998 9888888777777776


Q ss_pred             HHHHHhhccCCCCCCCCCccccccccccccchhhHHHHHHHHHHHHHhcCccccccccccccCCCCCCCchHHHhHHHHH
Q 008231          114 VGLLTSATSIPSMRPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKAMIFFF  193 (573)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  193 (573)
                      ...+.+....                       .+....++..++.|++.+...+...+++.|.+|+++      |+++.
T Consensus       287 ~~~~~~~~~~-----------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~  337 (352)
T PF07690_consen  287 ALGLLLLPFS-----------------------SSPVWLIIALFLIGFGFGIVFPILFSLIQELVPPEY------RGTAF  337 (352)
T ss_dssp             HHHHCCSHHH-----------------------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCHTCH------HHHHH
T ss_pred             HHHHHHHHHh-----------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH------HHHHH
Confidence            6666553210                       134556667778899999999999999999999988      99999


Q ss_pred             HHHHHHHHhhhHHHH
Q 008231          194 NRFYFAISIGSLFAV  208 (573)
Q Consensus       194 ~~~~~~~~ig~~~~~  208 (573)
                      ++.+...++|..+||
T Consensus       338 g~~~~~~~~~~~igP  352 (352)
T PF07690_consen  338 GLFNSIGSLGGIIGP  352 (352)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCC
Confidence            999999999999987

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=98.90  E-value=1.5e-08  Score=121.43  Aligned_cols=184  Identities=13%  Similarity=-0.045  Sum_probs=133.7

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHH
Q 008231           32 WLAAGLILGTELSERICAMGISMNLVTYLVGDLHLSSAKSATIVTNFMGTLNLLGLLGGFLADAKLGRYLTVAIFASVTA  111 (573)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~  111 (573)
                      .+.++..++..++.++.++++..++|.|+.+.+|.+..+.+++.+.+.++..++.++.|+++|++ ++++.+..+.++.+
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~-~~~~~~~~~~~~~~  302 (1140)
T PRK06814        224 DKRIWLAILGISWFWLVGAVVLSQLPLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGR-ITLLYVPIGALLMG  302 (1140)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCc-eeeeeehHHHHHHH
Confidence            34566777777777777777888999999999999999999999999999999999999999987 77766666665555


Q ss_pred             HHHHHHHhhcc--CCCCCCCCCccccccccccccchhhHHHHHHHHHHHHHhcCccccccccccccCCCCCCCchHHHhH
Q 008231          112 LVVGLLTSATS--IPSMRPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKAM  189 (573)
Q Consensus       112 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~r  189 (573)
                      ++.+.+.+...  .+......+       .-+.. ...+.+.++++.++.|++.+...+...+++.+.+|++.      |
T Consensus       303 ~~~~~l~~~~~~~~~~~~~~~~-------~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~  368 (1140)
T PRK06814        303 LFGLDLAFASSSVPAEPAQLKS-------ILVFL-SKRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAH------R  368 (1140)
T ss_pred             HHHHHHHhcccccccccccccc-------hhhhh-cccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCccc------c
Confidence            55444433200  000000000       00000 00134566777888899999999899999999999999      9


Q ss_pred             HHHHHHHHHHHHhhhHHHHHHhhhhhc-ccchhHHHHHHHHH
Q 008231          190 IFFFNRFYFAISIGSLFAVIVLVYVQD-NVGRGWGYGISAGT  230 (573)
Q Consensus       190 ~~~~~~~~~~~~ig~~~~~~~~~~l~~-~~g~~~~f~~~~~~  230 (573)
                      |+++|..++..++|..+++++++.+.+ ..++...+++.++.
T Consensus       369 G~v~g~~~~~~~~~~~ig~~~~g~l~~~~~~~~~~~~~~~~~  410 (1140)
T PRK06814        369 ARVIAANNVLNAAFMVAGTIILALLQALGFSIPWIILFIALA  410 (1140)
T ss_pred             eeeeHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence            999999999999999999999998873 44666666544443

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=98.89  E-value=4.6e-08  Score=101.97  Aligned_cols=167  Identities=13%  Similarity=-0.109  Sum_probs=114.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhHHHHHhhhccch---hHHHHH-HHH
Q 008231           33 LAAGLILGTELSERICAMGISMNLVTYLVGDLHLSSAKSATIVTNFMGTLNLLGLLGGFLADAKLGR---YLTVAI-FAS  108 (573)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr---r~~~~~-~~~  108 (573)
                      +.+|.+....++....+|++..++|.|+++ .|++.. .+....+..+.+.++   .++++||. .|   |+.... ...
T Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~wlp~~L~~-~g~s~~-~~~~~~l~~~~g~~g---~~~~~d~~-~r~~~r~~~~~~~~~  265 (368)
T TIGR00903       192 KDLWIIGAILGFGVALFDNLAIWLEAALRP-AGLEDI-AGDAVALAILAGLIG---VAVIPDRV-ARAGLRSIYIRAAAL  265 (368)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCChH-HHHHHHHHHHHHHHH---HHHhhHHh-hhhhhHHHHHHHHHH
Confidence            567888888899999999999999999964 678764 555555555544444   47778876 44   333332 333


Q ss_pred             HHHHHHHHHHhhccCCCCCCCCCccccccccccccchhhHHHHHHHHHHHHHhcCccccccccccccCCCCCCCchHHHh
Q 008231          109 VTALVVGLLTSATSIPSMRPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKA  188 (573)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (573)
                      +.+++....++..                          +....++...+.+++.....+...++.+|.+|++.      
T Consensus       266 ~~a~~~~~~~~~~--------------------------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~------  313 (368)
T TIGR00903       266 LIAAFFLALAFEL--------------------------NRLALFAFIGIAGLLMLPAYAIIMDWIGKFCDKEL------  313 (368)
T ss_pred             HHHHHHHHHHHcc--------------------------ccHHHHHHHHHHHHhhhhhHHHHHHHHHHhcchhh------
Confidence            3333333333321                          12233334455666666666777889999999998      


Q ss_pred             HHHHHHHHHHHHHhhhHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHHHH
Q 008231          189 MIFFFNRFYFAISIGSLFAVIVLVYVQDNVGRGWGYGISAGTMVVAAAILL  239 (573)
Q Consensus       189 r~~~~~~~~~~~~ig~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~  239 (573)
                      |+++.|+.+...++|++.+|++.+.+..  |.+..|.+.++..+++.+...
T Consensus       314 rgt~~G~~~~~g~~~~~~~~~~~~~~~~--~~~~~f~~~~~~~~i~~~~~~  362 (368)
T TIGR00903       314 HGKAAGAIGFTSRAISVALALAAMLFIS--SAEAYFTFLAILITIAFAIAL  362 (368)
T ss_pred             cCcccchhhHHHHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999988774  666777766666666555443

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=98.87  E-value=8.3e-08  Score=101.11  Aligned_cols=159  Identities=13%  Similarity=0.002  Sum_probs=118.3

Q ss_pred             HHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHhhccCCC
Q 008231           46 RICAMGISMNLVTYLVGDLHLSSAKSATIVTNFMGTLNLLGLLGGFLADAKLGRYLTVAIFASVTALVVGLLTSATSIPS  125 (573)
Q Consensus        46 ~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~  125 (573)
                      ..........++.|+++.+|.++.+.|.+.+...++..++.++.+++.||+ ++|+++..+..+ ++...+..+.     
T Consensus       218 ~~~~~~~~~~~~~~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~-~~~~~~~~g~~~-~~~~~~~~~~-----  290 (393)
T PRK11195        218 WGAGATLRFLVLAWAPVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLE-TVLRVLPAGILM-GLVVLLMALQ-----  290 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCC-cccchHHHHHHH-HHHHHHHHHH-----
Confidence            344445555667888889999999999999999999999999999999998 888888777533 3333333332     


Q ss_pred             CCCCCCccccccccccccchhhHHHHHHHHHHHHHhcCccccccccccccCCCCCCCchHHHhHHHHHHHHHHHHHhhhH
Q 008231          126 MRPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKAMIFFFNRFYFAISIGSL  205 (573)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~  205 (573)
                                           .+.+...+..++.|++.+...+...+.+.+..|++. .    ++++.++.+...++|..
T Consensus       291 ---------------------~~~~~~~~~~~~~G~~~g~~~~~~~~~~q~~~~~~~-~----~g~~~a~~~~~~~~~~~  344 (393)
T PRK11195        291 ---------------------HSLLPAYPLLILIGALGGFFVVPMNALLQHRGHVLV-G----AGHSIAVQNFNENLAML  344 (393)
T ss_pred             ---------------------hHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhCcccc-c----chhHHHHHhHHHHHHHH
Confidence                                 244555666778899988888888888877644331 1    69999999999999999


Q ss_pred             HHHHHhhhhhcccchhHHHHHHHHHHHHHHHHH
Q 008231          206 FAVIVLVYVQDNVGRGWGYGISAGTMVVAAAIL  238 (573)
Q Consensus       206 ~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~  238 (573)
                      ++..+.+.+ +..|-++.+.+..+..++.....
T Consensus       345 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  376 (393)
T PRK11195        345 LMLGLYSLL-VKLGVPVVAVIVGFGLLVALAMA  376 (393)
T ss_pred             HHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHH
Confidence            999998866 56787777776655555444433

>PF13347 MFS_2: MFS/sugar transport protein

Probab=98.84  E-value=1.3e-07  Score=100.87  Aligned_cols=163  Identities=17%  Similarity=0.041  Sum_probs=133.0

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHH
Q 008231           32 WLAAGLILGTELSERICAMGISMNLVTYLVGDLHLSSAKSATIVTNFMGTLNLLGLLGGFLADAKLGRYLTVAIFASVTA  111 (573)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~  111 (573)
                      .|....++...++...+.....+..+.|.+..+|.+ ...+.+..+..+...++.+++++++||+ |+|+++..+..+.+
T Consensus       224 nr~~~~l~~~~~~~~~~~~~~~~~~~y~~~~vl~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~r~-gk~~~~~~~~~~~~  301 (428)
T PF13347_consen  224 NRPFRILLLAFFLQWLAFALMNTFLPYYFTYVLGNE-GLISIFMLIFFVASIVGSPLWGRLSKRF-GKKKVYIIGLLLAA  301 (428)
T ss_pred             cchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhcCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHc-cceeehhhhHHHHH
Confidence            356677777777777777777777777777778877 5667778888999999999999999998 99999999999999


Q ss_pred             HHHHHHHhhccCCCCCCCCCccccccccccccchhhHHHHHHHHHHHHHhcCccccccccccccCCCCCCCch-HHHhHH
Q 008231          112 LVVGLLTSATSIPSMRPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPK-EEKAMI  190 (573)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~~-~~~~r~  190 (573)
                      ++.++..+...                        .+.+.+++..++.|++.+...+...++++|..+.++.+ .+...|
T Consensus       302 ~~~~~~~~~~~------------------------~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g  357 (428)
T PF13347_consen  302 LGFLLLFFLGP------------------------GSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREG  357 (428)
T ss_pred             HHHHHHHHHHh------------------------hhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchH
Confidence            99888877521                        36778888889999999999999999999998855321 112268


Q ss_pred             HHHHHHHHHHHhhhHHHHHHhhhhhcccch
Q 008231          191 FFFNRFYFAISIGSLFAVIVLVYVQDNVGR  220 (573)
Q Consensus       191 ~~~~~~~~~~~ig~~~~~~~~~~l~~~~g~  220 (573)
                      ..++.++....+|..+++.+.+.+.+..|+
T Consensus       358 ~~~s~~~~~~k~~~~la~~i~g~~l~~~Gy  387 (428)
T PF13347_consen  358 MYFSVNSFFIKIGQGLAGAIVGLLLALVGY  387 (428)
T ss_pred             HHHHhhhhhhHHHHHHHHHHHHHHHHHhCc
Confidence            888999999999999999999988766554

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=98.83  E-value=7.4e-08  Score=100.56  Aligned_cols=149  Identities=8%  Similarity=-0.106  Sum_probs=99.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHH
Q 008231           34 AAGLILGTELSERICAMGISMNLVTYLVGDLHLSSAKSATIVTNFMGTLNLLGLLGGFLADAKLGRYLTVAIFASVTALV  113 (573)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~  113 (573)
                      ..+..++..++...+.+....+.|.++.+.+|++..+.+.+.+...+...++.+++|++.||+ |||+++.++..+..+.
T Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~~~~~~~~~  273 (377)
T PRK11102        195 RVLGYMLASGFSFAGMFSFLTAGPFVYIELNGVSPQNFGYYFALNIVFLFVMTIINSRFVRRV-GALNMLRFGLWIQFIM  273 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHHHH
Confidence            344444455555555666666777888888999999999999999999999999999999998 9999998887664443


Q ss_pred             HHHHHhhccCCCCCCCCCccccccccccccchhhHHHHHHHHHHHHHhcCccccccccccccCCCCCCCchHHHhHHHHH
Q 008231          114 VGLLTSATSIPSMRPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKAMIFFF  193 (573)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  193 (573)
                      .+........+                      .+.+.+.++..+.+.+.+...+.....+.|..| +.      ++++.
T Consensus       274 ~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~------~g~~~  324 (377)
T PRK11102        274 GIWLVVSALLD----------------------LGFWALVVGVAAFVGCVSMISSNAMAVILDEFP-HM------AGTAS  324 (377)
T ss_pred             HHHHHHHHHHh----------------------hhHHHHHHHHHHHHHHHHHhhHHHHHHHhcccc-cc------chHHH
Confidence            32222110000                      123333444444444455555555566777666 55      88888


Q ss_pred             HHHHHH-HHhhhHHHHHHhh
Q 008231          194 NRFYFA-ISIGSLFAVIVLV  212 (573)
Q Consensus       194 ~~~~~~-~~ig~~~~~~~~~  212 (573)
                      ++.+.. ..+|..+++++++
T Consensus       325 ~~~~~~~~~~g~~~g~~~~~  344 (377)
T PRK11102        325 SLAGTLRFGIGAIVGALLSL  344 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHh
Confidence            886543 4567777766654

>PRK09848 glucuronide transporter; Provisional

Probab=98.83  E-value=4.2e-08  Score=105.24  Aligned_cols=163  Identities=13%  Similarity=0.040  Sum_probs=122.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHH
Q 008231           33 LAAGLILGTELSERICAMGISMNLVTYLVGDLHLSSAKSATIVTNFMGTLNLLGLLGGFLADAKLGRYLTVAIFASVTAL  112 (573)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~  112 (573)
                      |.++..+...++...+++......+.|+++.+|.+....++......+...++.++.++++||+ |+|+++.++..+.++
T Consensus       228 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~-g~~~~~~~g~~~~~i  306 (448)
T PRK09848        228 RPLFMLCIGALCVLISTFAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARI-GKKNTFLIGALLGTC  306 (448)
T ss_pred             chHHHHHHHHHHHHHHHHHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHH
Confidence            4556666666666677666666677788888888776655555544666788899999999998 999999999988888


Q ss_pred             HHHHHHhhccCCCCCCCCCccccccccccccchhhHHHHHHHHHHHHHhcCccccccccccccCCCCCCCchH-HHhHHH
Q 008231          113 VVGLLTSATSIPSMRPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKE-EKAMIF  191 (573)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~~~-~~~r~~  191 (573)
                      +.+++.+...                        .+.+.+++..++.|+|.+...+...++.+|..|.++.+. +..+|.
T Consensus       307 ~~~~~~~~~~------------------------~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~  362 (448)
T PRK09848        307 GYLLFFWVSV------------------------WSLPVALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGL  362 (448)
T ss_pred             HHHHHHHcCc------------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhH
Confidence            8776665321                        245566677788899999999999999999877553110 011588


Q ss_pred             HHHHHHHHHHhhhHHHHHHhhhhhcccch
Q 008231          192 FFNRFYFAISIGSLFAVIVLVYVQDNVGR  220 (573)
Q Consensus       192 ~~~~~~~~~~ig~~~~~~~~~~l~~~~g~  220 (573)
                      .++.+++...+|..+|+.+.+.+.+..|+
T Consensus       363 ~~~~~~~~~klg~aig~~i~g~~l~~~G~  391 (448)
T PRK09848        363 TYSLFSFTRKCGQAIGGSIPAFILGLSGY  391 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            88999999999999999999988765554

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.82  E-value=3.3e-08  Score=105.35  Aligned_cols=179  Identities=14%  Similarity=0.067  Sum_probs=123.7

Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhHHHHHhhhccc-------hhHHH
Q 008231           31 GWLAAGLILGTELSERICAMGISMNLVTYLVGDLHLSSAKSATIVTNFMGTLNLLGLLGGFLADAKLG-------RYLTV  103 (573)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~G-------rr~~~  103 (573)
                      ..+.+|.+.+..+.++++++.+..++|.|+.+.+|++..+.|+..++-.+...+..+++|.++||...       +||.+
T Consensus       256 ts~~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkif  335 (466)
T KOG2532|consen  256 TSPPVWAIWISAFGGNWGFYLLLTYLPTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIF  335 (466)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHH
Confidence            34578999999999999999999999999999999999999999999999999999999999999722       12222


Q ss_pred             H-HHHHHHHHHHHHHHhhccCCCCCCCCCccccccccccccchhhHHHHHHHHHHHHHhcCccccccccccccCCCCCCC
Q 008231          104 A-IFASVTALVVGLLTSATSIPSMRPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSD  182 (573)
Q Consensus       104 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~  182 (573)
                      - ++....+++.+.+++...-.                    .......+.++..+.|+..+++.    .-..|..| +.
T Consensus       336 n~i~~~~~ai~l~~l~~~~~~~--------------------~~~a~~~l~~~~~~~g~~~~Gf~----~~~~~~ap-q~  390 (466)
T KOG2532|consen  336 NTIAFGGPAVFLLVLAFTSDEH--------------------RLLAVILLTIAIGLSGFNISGFY----KNHQDIAP-QH  390 (466)
T ss_pred             HhHHHHHHHHHHHeeeecCCCc--------------------chHHHHHHHHHHHHcccchhhhH----hhhhhccc-hH
Confidence            2 23333333333333321100                    00011222222222333333322    22233333 33


Q ss_pred             chHHHhHHHHHHHHHHHHHhhhHHHHHHhhhhhcc---cchhHHHHHHHHHHHHHHHHHHh
Q 008231          183 PKEEKAMIFFFNRFYFAISIGSLFAVIVLVYVQDN---VGRGWGYGISAGTMVVAAAILLI  240 (573)
Q Consensus       183 ~~~~~~r~~~~~~~~~~~~ig~~~~~~~~~~l~~~---~g~~~~f~~~~~~~~~~~~~~~~  240 (573)
                            -+..+++.+...++.++++|.+.+.+...   ..|+++|.+.++..+++.+.+.+
T Consensus       391 ------a~~l~g~~~~~~~~~~~~~P~~vg~~~~~~t~~eW~~VF~i~a~i~~~~~i~f~~  445 (466)
T KOG2532|consen  391 ------AGFVMGIINFVGALAGFIAPLLVGIIVTDNTREEWRIVFLIAAGILIVGNIIFLF  445 (466)
T ss_pred             ------HHHHHHHHHHHHHHHHHHHHHheeeEeCCCCHHHHHHHHHHHHHHHHHhchheeE
Confidence                  79999999999999999999999999842   36999999998887777655443

>TIGR00901 2A0125 AmpG-related permease

Probab=98.80  E-value=5.4e-08  Score=100.85  Aligned_cols=145  Identities=17%  Similarity=0.086  Sum_probs=111.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHH-HHHHHHHhHHHHHhhhccchhHHHHHHHHHHHH
Q 008231           34 AAGLILGTELSERICAMGISMNLVTYLVGDLHLSSAKSATIVTNFM-GTLNLLGLLGGFLADAKLGRYLTVAIFASVTAL  112 (573)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~-~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~  112 (573)
                      ..+.+.+..++....++...++++.|+++ +|++..+.+.+.++.. +...++.+++|+++||+ |||+.+.++.++.++
T Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~-g~~~~l~~~~~~~~~  287 (356)
T TIGR00901       210 QALLLLLLIVLYKLGDSAATVLTTLFLLD-MGFSKEEIALVAKINGLLGAILGGLIGGIIMQPL-NILYALLLFGIVQAL  287 (356)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHH
Confidence            35666666677778888888999999987 9999999998888766 56789999999999998 999999888887777


Q ss_pred             HHHHHHhhccCCCCCCCCCccccccccccccchhhHHHHHHHHHHHHHhcCccccccccccccCCCCCCCchHHHhHHHH
Q 008231          113 VVGLLTSATSIPSMRPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKAMIFF  192 (573)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~  192 (573)
                      +..+..+..+...            +++   .+..+.+.+..+.++.+++.+...+...+++.|.+|++.      |++.
T Consensus       288 ~~~~~~~~~~~~~------------~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~------~g~~  346 (356)
T TIGR00901       288 TNAGFVWLASNGH------------HDG---ITFPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKF------GATQ  346 (356)
T ss_pred             HHHHHHHHHhcCc------------ccc---cccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCc------cHHH
Confidence            6665544211000            000   000134566777888899999999999999999999999      9999


Q ss_pred             HHHHHHHHH
Q 008231          193 FNRFYFAIS  201 (573)
Q Consensus       193 ~~~~~~~~~  201 (573)
                      +++++...+
T Consensus       347 ~g~~~~~~~  355 (356)
T TIGR00901       347 MALLSSLSA  355 (356)
T ss_pred             HHHHHHHHh
Confidence            999877654

>TIGR00898 2A0119 cation transport protein

Probab=98.78  E-value=5.9e-08  Score=105.70  Aligned_cols=142  Identities=14%  Similarity=-0.018  Sum_probs=100.6

Q ss_pred             hhcCCCchhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCcccccccccc
Q 008231           62 GDLHLSSAKSATIVTNFMGTLNLLGLLGGFLADAKLGRYLTVAIFASVTALVVGLLTSATSIPSMRPPQCDDYRRKHHQC  141 (573)
Q Consensus        62 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (573)
                      +.++.+...   ......+....+.++.+++.||+ |||+++.++.++.+++.+++.+..+                   
T Consensus       351 ~~~~~~~~~---~~~~~~~~~i~~~~~~~~l~dr~-grr~~~~~~~~~~~~~~l~~~~~~~-------------------  407 (505)
T TIGR00898       351 GNLGGNIYL---DLFISGLVELPAKLITLLLIDRL-GRRYTMAASLLLAGVALLLLLFVPV-------------------  407 (505)
T ss_pred             cccCCChHH---HHHHHHHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHHHHcCC-------------------
Confidence            344554332   23344566677888899999998 9999999998888888777666421                   


Q ss_pred             ccchhhHHHHHHHHHHHHHhcCccccccccccccCCCCCCCchHHHhHHHHHHHHHHHHHhhhHHHHHHhhhhhcccchh
Q 008231          142 IEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKAMIFFFNRFYFAISIGSLFAVIVLVYVQDNVGRG  221 (573)
Q Consensus       142 ~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~~~~~l~~~~g~~  221 (573)
                           ...+...+..++.+.+.+...+....+.+|.+|++.      |++++++.+....+|++++|.+.+ + ...++.
T Consensus       408 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~------r~~~~g~~~~~~~ig~~i~p~i~~-~-~~~~~~  474 (505)
T TIGR00898       408 -----DLYFLRTALAVLGKFGITSAFQMVYLYTAELYPTVV------RNLGVGVCSTMARVGSIISPFLVY-L-GEKWLF  474 (505)
T ss_pred             -----CchHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHH------HhhhHhHHHHHHHHHHHHHhHHHH-H-HHHHHh
Confidence                 111233333445555556666777889999999988      999999999999999999999998 4 345666


Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 008231          222 WGYGISAGTMVVAAAILL  239 (573)
Q Consensus       222 ~~f~~~~~~~~~~~~~~~  239 (573)
                      .++++.++..+++.+..+
T Consensus       475 ~~~~~~~~~~~~~~~~~~  492 (505)
T TIGR00898       475 LPLVLFGGLALLAGILTL  492 (505)
T ss_pred             hHHHHHHHHHHHHHHHHH
Confidence            777766665555544433

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=98.77  E-value=2.4e-07  Score=97.36  Aligned_cols=177  Identities=10%  Similarity=-0.045  Sum_probs=131.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHH
Q 008231           35 AGLILGTELSERICAMGISMNLVTYLVGDLHLSSAKSATIVTNFMGTLNLLGLLGGFLADAKLGRYLTVAIFASVTALVV  114 (573)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~  114 (573)
                      +.+.+...++....+-....+.+.|+++.-|.+....+.+.++..++-.+.-.+.+++..|+ |-|+++.++.+..++=.
T Consensus       209 ~~~Fll~~~l~~~~~~~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~-g~~~ll~~a~~~~~vR~  287 (400)
T PF03825_consen  209 FLVFLLAAFLIGISHAAYYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRF-GIKWLLLLALVAYAVRW  287 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHH
Confidence            44445555566666666677888898865557888888877877888888888999999998 99999999999988887


Q ss_pred             HHHHhhccCCCCCCCCCccccccccccccchhhHHHHHHHHHHHHHhcCccccccccccccCCCCCCCchHHHhHHHHHH
Q 008231          115 GLLTSATSIPSMRPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKAMIFFFN  194 (573)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  194 (573)
                      .+.+..++ |                    .+......+.+..+.|+..+.+......++.+..|++.      |+++.+
T Consensus       288 ~l~a~~~~-~--------------------~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~------~at~Q~  340 (400)
T PF03825_consen  288 LLYAYFSD-P--------------------WPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPEL------RATAQG  340 (400)
T ss_pred             HHHHHhcC-C--------------------cHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccc------hHHHHH
Confidence            77777521 0                    00112223444567999999999999999999999999      999999


Q ss_pred             HHHH-HHHhhhHHHHHHhhhhhcccchhH------HHHHHHHHHHHHHHHHH
Q 008231          195 RFYF-AISIGSLFAVIVLVYVQDNVGRGW------GYGISAGTMVVAAAILL  239 (573)
Q Consensus       195 ~~~~-~~~ig~~~~~~~~~~l~~~~g~~~------~f~~~~~~~~~~~~~~~  239 (573)
                      +++. ...+|..+|..++|++.+.+|-+.      .+.+.++..++..+.+.
T Consensus       341 l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~~~~v~a~~~~~~~~~f~  392 (400)
T PF03825_consen  341 LYSALSFGLGGAIGSLIGGWLYDAFGARGMFDWSAVFLVFAVMALVILVLFV  392 (400)
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHH
Confidence            9776 468999999999999999877543      34444444444444333

>PRK11043 putative transporter; Provisional

Probab=98.75  E-value=2.7e-07  Score=97.40  Aligned_cols=149  Identities=11%  Similarity=-0.098  Sum_probs=105.1

Q ss_pred             HHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHhhccC
Q 008231           44 SERICAMGISMNLVTYLVGDLHLSSAKSATIVTNFMGTLNLLGLLGGFLADAKLGRYLTVAIFASVTALVVGLLTSATSI  123 (573)
Q Consensus        44 ~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~  123 (573)
                      +....++....+.|.|++ +.|++..+.++......++..++.++.+++.||+ |+|+.+.......+++...+......
T Consensus       214 ~~~~~~~~~~~~~p~~~~-~~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~-~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (401)
T PRK11043        214 ACSAAFFAWLTGSPFILE-QMGYSPADIGLSYVPQTIAFLVGGYGCRAALQKW-GGEQLLPWLLVLFAVSVIAIWLASLL  291 (401)
T ss_pred             HHHHHHHHHHHHhHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            333445556667777775 5799999999888888888889999999999998 99987766655555544333221100


Q ss_pred             CCCCCCCCccccccccccccchhhHHHHHHHHHHHHHhcCccccccccccccCCCCCCCchHHHhHHHHHHHHHHHHHhh
Q 008231          124 PSMRPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKAMIFFFNRFYFAISIG  203 (573)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig  203 (573)
                      .                     ..+...+++...+.|++.+...+...+...+..| ++      ++++.++++.....+
T Consensus       292 ~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~------~g~~~g~~~~~~~~~  343 (401)
T PRK11043        292 S---------------------HPSLVPLLIPFCVMAAANGAIYPIVVAQALRPFP-QA------TGKAAALQNTLQLGL  343 (401)
T ss_pred             c---------------------cCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCc-cc------ChHHHHHHHHHHHHH
Confidence            0                     0123344455566788888888887777777665 45      899999999888888


Q ss_pred             hHHHHHHhhhhhcccchhH
Q 008231          204 SLFAVIVLVYVQDNVGRGW  222 (573)
Q Consensus       204 ~~~~~~~~~~l~~~~g~~~  222 (573)
                      +..++.+.+.+.+......
T Consensus       344 ~~~~~~~~g~l~~~~~~~~  362 (401)
T PRK11043        344 CFLASLLVSALISTPLLTT  362 (401)
T ss_pred             HHHHHHHHHHccCCChhHH
Confidence            8889999998876443333

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=98.75  E-value=2.3e-07  Score=97.59  Aligned_cols=71  Identities=10%  Similarity=-0.042  Sum_probs=60.2

Q ss_pred             HHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHhh
Q 008231           49 AMGISMNLVTYLVGDLHLSSAKSATIVTNFMGTLNLLGLLGGFLADAKLGRYLTVAIFASVTALVVGLLTSA  120 (573)
Q Consensus        49 ~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~  120 (573)
                      ......+.|.|+.+++|++..+.+.+.+...+...++.++.|++.||+ |||+.+.++..+..++..++.+.
T Consensus       219 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~-g~~~~~~~~~~~~~~~~~~~~~~  289 (392)
T PRK10473        219 ILTFVNTSPVLLMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIF-KPRTLMLTSQVLFLAAGITLALS  289 (392)
T ss_pred             HHHHHHhCHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHHHH
Confidence            334455567788889999999999999999999999999999999998 99999999988888877776664

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=98.73  E-value=8.2e-08  Score=103.57  Aligned_cols=176  Identities=18%  Similarity=0.102  Sum_probs=147.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhHHHHHhhhccc--hhHHHHHHHHHH
Q 008231           33 LAAGLILGTELSERICAMGISMNLVTYLVGDLHLSSAKSATIVTNFMGTLNLLGLLGGFLADAKLG--RYLTVAIFASVT  110 (573)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~G--rr~~~~~~~~~~  110 (573)
                      +..+.+.+...+..++++.-..+++.|.. +++.+..+++.++++..+...++.++.|+++|+. .  ++.+..+++++.
T Consensus       298 ~~fl~~~~~~~~~~~g~~~p~~~l~~~~~-~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~-~~~~~~~~~~~ll~~  375 (509)
T KOG2504|consen  298 PKFLLLALSNLFAYLGFNVPFVYLPSYAK-SLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKP-GIRALVLFLLTLLIA  375 (509)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCcc-ccchHHHHHHHHHHH
Confidence            46777888888888888888888888877 8999999999999999999999999999999997 6  444555666666


Q ss_pred             HHHHHHHHhhccCCCCCCCCCccccccccccccchhhHHHHHHHHHHHHHhcCccccccccccccCCCCCCCchHHHhHH
Q 008231          111 ALVVGLLTSATSIPSMRPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKAMI  190 (573)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~  190 (573)
                      +++...+.+++                          +++.++..-.+.|++.|.+.+..+..+.|..+.++      -.
T Consensus       376 gl~~~~~p~~~--------------------------~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~------l~  423 (509)
T KOG2504|consen  376 GLARLFLPFAT--------------------------TYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEK------LS  423 (509)
T ss_pred             HHHHHHHHHhc--------------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhh------cc
Confidence            66666666653                          45677777788999999998888889999999988      99


Q ss_pred             HHHHHHHHHHHhhhHHHHHHhhhhhcccc-hhHHHHHHHHHHHHHHHHHHhcC
Q 008231          191 FFFNRFYFAISIGSLFAVIVLVYVQDNVG-RGWGYGISAGTMVVAAAILLIGT  242 (573)
Q Consensus       191 ~~~~~~~~~~~ig~~~~~~~~~~l~~~~g-~~~~f~~~~~~~~~~~~~~~~~~  242 (573)
                      .++|+......++..+||++.|++.+..| |...|+...+..+++.+.+++..
T Consensus       424 ~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f~~~g~~~~~s~~~~~~~~  476 (509)
T KOG2504|consen  424 NAYGLLLLFQGIGALVGPPIAGLLYDITGNYDHAFYFCGLCFLLSAVLLLILR  476 (509)
T ss_pred             hHHHHHHHHhHHHHHcCcccceeeeeccCCeeeehhhcChHHHHHHHHHHHhH
Confidence            99999999999999999999999999888 99999988888877776655544

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.72  E-value=2e-07  Score=98.65  Aligned_cols=192  Identities=12%  Similarity=0.029  Sum_probs=132.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHH
Q 008231           33 LAAGLILGTELSERICAMGISMNLVTYLVGDLHLSSAKSATIVTNFMGTLNLLGLLGGFLADAKLGRYLTVAIFASVTAL  112 (573)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~  112 (573)
                      +.+.+.+...+...+.--.....-.+.+-++-|++..++.++.........+..+++.++.||+ |||+.++++..+..+
T Consensus       269 ~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~-gRRpLll~~~~~~~~  347 (485)
T KOG0569|consen  269 RPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRL-GRRPLLLISLSLMAV  347 (485)
T ss_pred             HHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCcHHHHHHHHHHHH
Confidence            3455555555555554322233334455567899999999999999999999999999999998 999999999999888


Q ss_pred             HHHHHHhhccCCCCCCCCCccccccccccccchhhHHHHHHHHHHHHHhcCc-cccccccccccCCCCCCCchHHHhHHH
Q 008231          113 VVGLLTSATSIPSMRPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGG-GIKSNVSGFGSDQFDTSDPKEEKAMIF  191 (573)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~-~~~~~~~~~~~~~~~~~~~~~~~~r~~  191 (573)
                      ...++.....+-..                 ....-.+..+++.++..++.+ +..|..+-+.+|.+|++.      |..
T Consensus       348 ~~~~~~~~~~l~~~-----------------~~~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~------R~a  404 (485)
T KOG0569|consen  348 ALLLMSIALFLSNS-----------------FGSWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSA------RSA  404 (485)
T ss_pred             HHHHHHHHHHHHHH-----------------hhhHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccc------hHH
Confidence            88777765321100                 000001122333333333222 235777889999999998      999


Q ss_pred             HHHHHHHHHHhhhHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHHHHhcCccccccC
Q 008231          192 FFNRFYFAISIGSLFAVIVLVYVQDNVGRGWGYGISAGTMVVAAAILLIGTPWYRFKK  249 (573)
Q Consensus       192 ~~~~~~~~~~ig~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~  249 (573)
                      ++++......+..++-......+.+.+|- ..|.+.++.+.+..+.+++..||.+.+.
T Consensus       405 a~s~~~~~~w~~~fiv~~~fp~l~~~~g~-~~filF~i~~~~~~i~~~~~lPETkgr~  461 (485)
T KOG0569|consen  405 AQSVATAVNWLSNFIVGFAFPPLQNVIGP-YVFILFVIPLAIFLIYLYRYLPETKGRT  461 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHHHHHhCcccCCCC
Confidence            99998888877777776777777777775 5666666666677777777777765443

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=98.72  E-value=6.9e-07  Score=89.27  Aligned_cols=165  Identities=15%  Similarity=-0.003  Sum_probs=131.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHH
Q 008231           33 LAAGLILGTELSERICAMGISMNLVTYLVGDLHLSSAKSATIVTNFMGTLNLLGLLGGFLADAKLGRYLTVAIFASVTAL  112 (573)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~  112 (573)
                      +..|.+..-.-+++..+|.+..++|.++. +.|+|..++|...+..++......+..-.+++|...+|+..+....+..+
T Consensus       208 ~~aW~vtLfmGlqS~~~Y~~~~WLP~ili-~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~  286 (395)
T COG2807         208 PLAWQVTLFMGLQSLLYYIVIGWLPAILI-DRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLV  286 (395)
T ss_pred             chhHHHHHHHHhhHHHHHHHHHHHHHHHH-HcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence            35677777777899999999999999988 67999999999999999999999999999999876888988888888899


Q ss_pred             HHHHHHhhccCCCCCCCCCccccccccccccchhhHHHHHHHHHHHHHhcCccccccccccccCCCCCCCchHHHhHHHH
Q 008231          113 VVGLLTSATSIPSMRPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKAMIFF  192 (573)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~  192 (573)
                      |.+.+.+...                         +...+.  .+++|+|.|...|....++.+..++.+.     -++.
T Consensus       287 G~~G~~~~P~-------------------------~~~~lw--~~llG~G~G~~F~laL~li~~rs~~a~~-----Aa~L  334 (395)
T COG2807         287 GLVGLLLAPG-------------------------QLPILW--ALLLGLGQGGAFPLALTLILLRSSDAAI-----AAAL  334 (395)
T ss_pred             HHHHHHHhhh-------------------------hHHHHH--HHHHhCccchHHHHHHHHHHhhcCChHH-----HHHH
Confidence            8888877531                         222222  4789999999999999999997765541     4555


Q ss_pred             HHHHHHHHHhhhHHHHHHhhhhhcccc-hhHHHHHHHHH
Q 008231          193 FNRFYFAISIGSLFAVIVLVYVQDNVG-RGWGYGISAGT  230 (573)
Q Consensus       193 ~~~~~~~~~ig~~~~~~~~~~l~~~~g-~~~~f~~~~~~  230 (573)
                      .++.+....+=+.+||.+.|++-|..| |+.+...-+..
T Consensus       335 SgmaQg~GYllAa~GP~l~G~lhDa~gsw~~~~~~l~~~  373 (395)
T COG2807         335 SGMAQGVGYLLAAFGPWLFGFLHDATGSWSAPLVLLALA  373 (395)
T ss_pred             HHHhhhhhHHHHhhhhhhHhHHHHhcCChHHHHHHHHHH
Confidence            666666666667789999999988775 88776654443

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=98.72  E-value=2.2e-07  Score=92.52  Aligned_cols=172  Identities=13%  Similarity=0.078  Sum_probs=112.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--cCCCc----hhh------------hH-HHHHHHHHHHHHHhHHHHHhh
Q 008231           34 AAGLILGTELSERICAMGISMNLVTYLVGD--LHLSS----AKS------------AT-IVTNFMGTLNLLGLLGGFLAD   94 (573)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~--~~~s~----~~~------------~~-~~~~~~~~~~~~~~~~G~laD   94 (573)
                      ....+-...|.+.+.||+..-..+...+..  .|+..    .+.            .. =.-+.++..+-+.++.+++.|
T Consensus       327 ttlllw~iwfgnafsyyg~VLlttelfqsgd~c~~~~r~~p~e~e~~~~c~~s~~~dYrdllitslaefPGlLIt~~ive  406 (528)
T KOG0253|consen  327 TTLLLWRIWFGNAFSYYGSVLLTTELFQSGDACPLYNRFLPTELETRANCPLSVAKDYRDLLITSLAEFPGLLITGVIVE  406 (528)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHHhccCccccchhcchhHHHhhhcCCccchhHHHHHHHHHHhhCCchhHHHHHHH
Confidence            445556667778888888765444333321  11111    111            11 122345667778899999999


Q ss_pred             hccchhHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCccccccccccccchhhHHHHHHHHHHHHHhcCccccccccccc
Q 008231           95 AKLGRYLTVAIFASVTALVVGLLTSATSIPSMRPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFG  174 (573)
Q Consensus        95 r~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~  174 (573)
                      |+ |||++|....++++++.+++....+-                     + .....++.+|+.+.    +...+++.|.
T Consensus       407 rl-GRKkTMal~l~~f~iflfll~~c~~r---------------------n-~~tvllf~arafis----g~fqvaYvYt  459 (528)
T KOG0253|consen  407 RL-GRKKTMALSLILFGIFLFLLTTCKTR---------------------N-AYTVLLFTARAFIS----GAFQVAYVYT  459 (528)
T ss_pred             Hh-cchhHHHHHHHHHHHHHHHHHHhcCc---------------------c-hhHHHHHHHHHHHh----chheEEEEec
Confidence            97 99999999999999988887765320                     0 12235666777653    3345678899


Q ss_pred             cCCCCCCCchHHHhHHHHHHHHHHHHHhhhHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHHHHh
Q 008231          175 SDQFDTSDPKEEKAMIFFFNRFYFAISIGSLFAVIVLVYVQDNVGRGWGYGISAGTMVVAAAILLI  240 (573)
Q Consensus       175 ~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~  240 (573)
                      .|.+|...      |+.+.|.-..+..||+++.|.+. ...+ .+-..+..+...+++++.+...+
T Consensus       460 PEVyPTav------RatgvGtcSsmaRIggI~~p~iA-~~~e-~s~sl~i~vy~~~~ilagIavcf  517 (528)
T KOG0253|consen  460 PEVYPTAV------RATGVGTCSSMARIGGIFSPVIA-MRAE-LSTSLPIFVYGALFILAGIAVCF  517 (528)
T ss_pred             Ccccchhh------hhcchhhhhhHHhhhhhhhhHHH-HHhc-cceeehHHHHHHHHHHHHHHhee
Confidence            99999999      99999999999999999999998 3333 33333444444455555544333

>PRK10429 melibiose:sodium symporter; Provisional

Probab=98.69  E-value=4.5e-07  Score=98.02  Aligned_cols=166  Identities=14%  Similarity=0.027  Sum_probs=117.2

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHH
Q 008231           32 WLAAGLILGTELSERICAMGISMNLVTYLVGDLHLSSAKSATIVTNFMGTLNLLGLLGGFLADAKLGRYLTVAIFASVTA  111 (573)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~  111 (573)
                      .|.++.++...++.....+......+.|.+..++ +....+.+.+...++..++.++.++++||+ |+|+++.++..+.+
T Consensus       230 n~~~~~ll~~~~~~~~~~~~~~~~~~y~~~y~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~-gkk~~~~~~~~~~~  307 (473)
T PRK10429        230 NDQLSCLLGMALAYNIASNIINGFAIYYFTYVIG-DADLFPYYLSYAGAANLVTLILFPRLVKSL-SRRILWAGASIFPV  307 (473)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHhhheeeEEEEECC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CcHHHHHHHHHHHH
Confidence            3666666777777777766666655544443443 556666777777788889999999999998 99999998887766


Q ss_pred             HHHHHHHhhccCCCCCCCCCccccccccccccchhhHHHHHHHHHHHHHhcCccccccccccccCCCCCCCch-HHHhHH
Q 008231          112 LVVGLLTSATSIPSMRPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPK-EEKAMI  190 (573)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~~-~~~~r~  190 (573)
                      ++.+...+..-.+                     ..+.+.+++.-++.|++.+...+...++++|..+.++-+ .+...|
T Consensus       308 ~~~~~~~~~~~~~---------------------~~~~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G  366 (473)
T PRK10429        308 LSCGVLLLMGLAA---------------------PHNALLIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCES  366 (473)
T ss_pred             HHHHHHHHHhccC---------------------chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchh
Confidence            6655543321000                     024556666677788999988888899999987744211 011145


Q ss_pred             HHHHHHHHHHHhhhHHHHHHhhhhhcccch
Q 008231          191 FFFNRFYFAISIGSLFAVIVLVYVQDNVGR  220 (573)
Q Consensus       191 ~~~~~~~~~~~ig~~~~~~~~~~l~~~~g~  220 (573)
                      ..++.+.+...+|..+|+.+.|++.+..|+
T Consensus       367 ~~~s~~~~~~K~~~al~~~i~g~~l~~~Gy  396 (473)
T PRK10429        367 IAYSVQTMVVKGGSAFAAFFIGVVLGLIGY  396 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            578889999999999999999998876665

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=98.68  E-value=1.7e-08  Score=103.59  Aligned_cols=146  Identities=20%  Similarity=0.256  Sum_probs=119.2

Q ss_pred             cccccchhhHHHHHHHHHhhhhhhhhhhcccccccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCcccchhH
Q 008231          372 PSGSLSAFLFITILLFTSLNEKVFVPLARKITHSIQGMTSLQRVGTGLIFSVIAMIVSAVIEQQRRETSVQKHIQISAFW  451 (573)
Q Consensus       372 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~  451 (573)
                      ..+.++....+...++.|+++.+.+|.=|++.           +.+|..+..++.+..++..              .+|.
T Consensus        69 ~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v-----------~~vG~~iW~~Av~~~~fs~--------------~Fwq  123 (493)
T KOG1330|consen   69 ELGLLQTVFIVVFMIASPLFGYLADRYNRKRV-----------IAVGIFIWTLAVFASGFSN--------------HFWQ  123 (493)
T ss_pred             hccchhHHHHHHHHHHHHHHHHHHhhcCcceE-----------EeeHHHHHHHHHHHHHHHH--------------HHHH
Confidence            45677888888889999999999766544432           7889999999988877753              6788


Q ss_pred             HHHHHHHHHHHHHhhhhhhhheeecccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCccccccccchhhHHHH
Q 008231          452 LVPQYFLVGAGEAFVYVGQLEFFIREGPERMKSMSTGLFLSAISMGMFVSSMLVSIVDKITNKHWLRSNLNKGKLNNFYW  531 (573)
Q Consensus       452 lv~~~~l~g~~~~~~~~~~~~~~~~~~p~~~rg~~~gi~~~~~~lg~~ig~~~~~~i~~~~~~~w~~~~~~~~~~~~~~~  531 (573)
                      +++.-.+.|+|++.+.|...+++.|.+|+..|++..++++++..+|+.+|....+++.+.+. .|          .+.|+
T Consensus       124 ~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~-~W----------r~af~  192 (493)
T KOG1330|consen  124 VLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTF-WW----------RWAFR  192 (493)
T ss_pred             HHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCcc-ce----------EEEEE
Confidence            88899999999999999999999999999999999999999999999999888888765442 13          24567


Q ss_pred             HHHHHHHHHHHHHHHHHhhcch
Q 008231          532 LLAVLGLLNFMVFLFFAMKHQY  553 (573)
Q Consensus       532 ~~a~~~~l~~~~~~~~~~~~~~  553 (573)
                      +.++++++.+++..++.++..+
T Consensus       193 ~~avl~vi~~~L~~~f~~eP~r  214 (493)
T KOG1330|consen  193 GSAVLGVIVGLLVFLFVREPER  214 (493)
T ss_pred             eehHHHHHHHHHHHhhccCccc
Confidence            7788888888877777766544

>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=98.64  E-value=9.8e-07  Score=84.08  Aligned_cols=93  Identities=16%  Similarity=0.148  Sum_probs=68.0

Q ss_pred             HHHhhhcCCCchhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCcccccc
Q 008231           58 TYLVGDLHLSSAKSATIVTNFMGTLNLLGLLGGFLADAKLGRYLTVAIFASVTALVVGLLTSATSIPSMRPPQCDDYRRK  137 (573)
Q Consensus        58 ~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (573)
                      .|+-+..++...+.|.+...-.....+...+.|-|+|+- |||+..+.-.+.+    +++.+....              
T Consensus        61 YyLYstYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDkq-GRKracvtycitY----iLsCiTKhS--------------  121 (454)
T KOG4332|consen   61 YYLYSTYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQ-GRKRACVTYCITY----ILSCITKHS--------------  121 (454)
T ss_pred             eeeehhcCccCCccceeeecccchHHHHHHHHHHHHhhh-ccccceeeehHHH----HHHHHhhcC--------------
Confidence            466678899999999888777778888888999999997 9999766554444    444443221              


Q ss_pred             ccccccchhhHHHHHHHHHHHHHhcCccccccccc-cccCCC
Q 008231          138 HHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSG-FGSDQF  178 (573)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~-~~~~~~  178 (573)
                               +++-.++++|.+.|+..+...+..-+ ++.|.-
T Consensus       122 ---------pqYkVLmVGR~LGGiaTsLLFSaFEsWliaEHn  154 (454)
T KOG4332|consen  122 ---------PQYKVLMVGRVLGGIATSLLFSAFESWLIAEHN  154 (454)
T ss_pred             ---------CceEEEeehhhhhhHHHHHHHHHHHHHHHHHhh
Confidence                     24557899999999988887766655 445544

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=98.63  E-value=2.1e-07  Score=96.62  Aligned_cols=141  Identities=13%  Similarity=0.012  Sum_probs=102.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHH
Q 008231           34 AAGLILGTELSERICAMGISMNLVTYLVGDLHLSSAKSATIVTNFMGTLNLLGLLGGFLADAKLGRYLTVAIFASVTALV  113 (573)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~  113 (573)
                      ..+.+.+..++.....+++..+.+.|+++.+|++..+.+.+.+.+.+...++.+++|+++||+ |||+.+..+..+.+.+
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~~~~~~~~~  304 (366)
T TIGR00886       226 HTWILALLYSVTFGSFLGVSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRL-GGARKLLMSFLGVAMG  304 (366)
T ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhh-ccchhHHHHHHHHHHH
Confidence            345555555555566677888899999999999999999999999999999999999999998 9998888777766666


Q ss_pred             HHHHHhhccCCCCCCCCCccccccccccccchhhHHHHHHHHHHHHHhcCccccccccccccCCCCCCCchHHHhHHHHH
Q 008231          114 VGLLTSATSIPSMRPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKAMIFFF  193 (573)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  193 (573)
                      ..+..+....+                      .+.....+...+.+++.+...+...+++++..| ++      ++.+.
T Consensus       305 ~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~------~g~~~  355 (366)
T TIGR00886       305 AFLVVLGLVSP----------------------LSLAVFIVLFVALFFFSGAGNGSTFALVPHIFR-RA------TGAVS  355 (366)
T ss_pred             HHHHHhcCCCc----------------------chHHHHHHHHHHHHHHhccccchhhhcchhhch-hh------cccHH
Confidence            65555432100                      033344444444555555555666677788776 35      89999


Q ss_pred             HHHHHHHHhhh
Q 008231          194 NRFYFAISIGS  204 (573)
Q Consensus       194 ~~~~~~~~ig~  204 (573)
                      |+.+...++|+
T Consensus       356 g~~~~~~~~g~  366 (366)
T TIGR00886       356 GLVGAIGNLGG  366 (366)
T ss_pred             HHHHHhccCCC
Confidence            99888877763

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=98.63  E-value=2.8e-07  Score=95.67  Aligned_cols=180  Identities=12%  Similarity=0.006  Sum_probs=139.3

Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC---CCchhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHH
Q 008231           31 GWLAAGLILGTELSERICAMGISMNLVTYLVGDLH---LSSAKSATIVTNFMGTLNLLGLLGGFLADAKLGRYLTVAIFA  107 (573)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~---~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~  107 (573)
                      +.|.+|.+.+........|+..-.-.+.|.+..++   .+....|.+.++..+.-.+.-.+..++.+|+ |.|+.++++.
T Consensus       218 k~~~fw~~~l~v~g~~~~Y~vfdqqf~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~ri-g~k~~Lllag  296 (412)
T PF01306_consen  218 KMRNFWFFVLFVIGVAAIYDVFDQQFPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRI-GAKNLLLLAG  296 (412)
T ss_dssp             TSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHH
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhc-ChHhHHHHHH
Confidence            33566666555555444455544456777775443   3445678888888888899999999999998 9999999999


Q ss_pred             HHHHHHHHHHHhhccCCCCCCCCCccccccccccccchhhHHHHHHHHHHHHHhcCccccccccccccCCCCCCCchHHH
Q 008231          108 SVTALVVGLLTSATSIPSMRPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEK  187 (573)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~~~~~  187 (573)
                      .+.++=..++++++                          +.+.+.+.+.+.|+-.+........++++.+|++.     
T Consensus       297 ~i~~iRi~~~~~~~--------------------------~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rl-----  345 (412)
T PF01306_consen  297 VIMAIRIIGSGFAT--------------------------NPWVISLIKLLHALEFPLLLVAAFKYITAHFDKRL-----  345 (412)
T ss_dssp             HHHHHHHHHHHT----------------------------SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGG-----
T ss_pred             HHHHHHHHHHhhhc--------------------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhH-----
Confidence            99999888988874                          57788999999999999999999999999999887     


Q ss_pred             hHHHHHHH-HHHHHHhhhHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHHHHhcCc
Q 008231          188 AMIFFFNR-FYFAISIGSLFAVIVLVYVQDNVGRGWGYGISAGTMVVAAAILLIGTP  243 (573)
Q Consensus       188 ~r~~~~~~-~~~~~~ig~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~  243 (573)
                       .++...+ .+.+..+|..+.+.++|++.|..|.+..|++.+.++++..++-.+..+
T Consensus       346 -sAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~~tylimg~iv~~~~li~~f~l~  401 (412)
T PF01306_consen  346 -SATLYLVGFQFAKQIGIIILSPLAGYLYDRIGFQHTYLIMGLIVLPFTLISAFTLK  401 (412)
T ss_dssp             -HHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-
T ss_pred             -HHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcCcHHHHHHHHHHHHHHHHHheeeec
Confidence             7788887 567889999999999999999999999998877776666555555444

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>PRK09669 putative symporter YagG; Provisional

Probab=98.55  E-value=1.1e-06  Score=94.20  Aligned_cols=161  Identities=13%  Similarity=0.051  Sum_probs=107.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHH
Q 008231           34 AAGLILGTELSERICAMGISMNLVTYLVGDLHLSSAKSATIVTNFMGTLNLLGLLGGFLADAKLGRYLTVAIFASVTALV  113 (573)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~  113 (573)
                      ..+.++...++...+..... .+..|+.++.--+....+.+.....+...++.+++++++||+ |||+.+.++..+.+++
T Consensus       230 ~~~~l~~~~~~~~~~~~~~~-~~~~y~~~~~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~-gk~~~~~~~~~~~~~~  307 (444)
T PRK09669        230 QWRIMFIFNVVLLTAVVTRG-GATLYYVNYVLLRPDLATLFLVTGMIAGLFGALLSERLLGKF-DRVRAFKWTIVAFVIL  307 (444)
T ss_pred             hHHHHHHHHHHHHHHHHHHh-hhhheeeeeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ChHHHHHHHHHHHHHH
Confidence            34444444444444443333 344454433222333344455556677778889999999998 9999999887766554


Q ss_pred             HHHHHhhccCCCCCCCCCccccccccccccchhhHHHHHHHHHHHHHhcCccccccccccccCCCCCCCch-HHHhHHHH
Q 008231          114 VGLLTSATSIPSMRPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPK-EEKAMIFF  192 (573)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~~-~~~~r~~~  192 (573)
                      .....+..  +                      .+.+.+++..++.|++.+...+...++++|..+.++.+ -+...+..
T Consensus       308 ~~~~~~~~--~----------------------~~~~~~~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~  363 (444)
T PRK09669        308 SALIFFIP--P----------------------SNVWLIFALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLV  363 (444)
T ss_pred             HHHHHHhC--c----------------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHH
Confidence            43333221  1                      35566777778899999999999999999988744311 01124667


Q ss_pred             HHHHHHHHHhhhHHHHHHhhhhhcccch
Q 008231          193 FNRFYFAISIGSLFAVIVLVYVQDNVGR  220 (573)
Q Consensus       193 ~~~~~~~~~ig~~~~~~~~~~l~~~~g~  220 (573)
                      ++.+++...+|..+|+.++|++.+..|+
T Consensus       364 ~s~~~~~~klg~alg~~i~g~ll~~~Gy  391 (444)
T PRK09669        364 FSTNLFAIKLGLAIGGAVVGWILAWVDY  391 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            8889999999999999999998877666

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=98.51  E-value=5e-06  Score=87.44  Aligned_cols=139  Identities=11%  Similarity=-0.109  Sum_probs=98.8

Q ss_pred             HHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHH---HHhhccCCC
Q 008231           49 AMGISMNLVTYLVGDLHLSSAKSATIVTNFMGTLNLLGLLGGFLADAKLGRYLTVAIFASVTALVVGL---LTSATSIPS  125 (573)
Q Consensus        49 ~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~---~~~~~~~~~  125 (573)
                      ........+.|+++.+|.+..+.+++......+..++.++.+++.||+ +++...  +.....++.+.   .....  . 
T Consensus       223 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~--~-  296 (394)
T PRK11652        223 IAVFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRF-STLMWQ--SVICCLLAGLLMWIPGWFG--V-  296 (394)
T ss_pred             HHHHHHhChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH--HHHHHHHHHHHHHHHHHhc--c-
Confidence            333345567788888999999999988888888888889999999998 743332  22222222221   11110  0 


Q ss_pred             CCCCCCccccccccccccchhhHHHHHHHHHHHHHhcCccccccccccccCCCCCCCchHHHhHHHHHHHHHHHHHhhhH
Q 008231          126 MRPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKAMIFFFNRFYFAISIGSL  205 (573)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~  205 (573)
                                           .+.+.++++..+.++|.+...|...++..|.+|+ +      ++...++.+...++|+.
T Consensus       297 ---------------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~------~g~~~~~~~~~~~lg~~  348 (394)
T PRK11652        297 ---------------------MNVWTLLVPAALFFFGAGMLFPLATSGAMEPFPY-L------AGTAGALLGGLQNIGSG  348 (394)
T ss_pred             ---------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-c------chHHHHHHHHHHHHHHH
Confidence                                 1344566677888999998889999988888873 4      78889999989999999


Q ss_pred             HHHHHhhhhhcccchh
Q 008231          206 FAVIVLVYVQDNVGRG  221 (573)
Q Consensus       206 ~~~~~~~~l~~~~g~~  221 (573)
                      +++.+++++.+...+.
T Consensus       349 ~~~~~~~~~~~~~~~~  364 (394)
T PRK11652        349 LAALLSAMLPQTGQFS  364 (394)
T ss_pred             HHHHHHHHccCCchHH
Confidence            9999999887654343

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=98.51  E-value=2e-06  Score=91.11  Aligned_cols=162  Identities=9%  Similarity=-0.080  Sum_probs=114.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhh-cCCCchhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHH
Q 008231           35 AGLILGTELSERICAMGISMNLVTYLVGD-LHLSSAKSATIVTNFMGTLNLLGLLGGFLADAKLGRYLTVAIFASVTALV  113 (573)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~-~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~  113 (573)
                      .+......++-.....+..++++.|+.+. .+.+....+...+.+.....++.+++|++.||+ ++|+++.++..+.++.
T Consensus       234 ~~~~~l~~f~yvg~e~~~~s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~-~~~~~l~i~~~~~~~~  312 (410)
T TIGR00885       234 YREGVIAQFFYVGVQIMCWTFIIQYAVRLIPGMTAGFAANYNIGAMVIFFISRFIGTWLISYL-AAHKVLMAYAIIGMAL  312 (410)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CHHHHHHHHHHHHHHH
Confidence            34444455554444446778889998753 245555556667777788899999999999998 9999988888877777


Q ss_pred             HHHHHhhccCCCCCCCCCccccccccccccchhhHHHHHHHHHHHHHhcCccccccccccccCCCCCCCchHHHhHHHHH
Q 008231          114 VGLLTSATSIPSMRPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKAMIFFF  193 (573)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  193 (573)
                      .++..+..                          +. .......+.|++.+..+|+..++..+..+++.      +....
T Consensus       313 ~ll~~~~~--------------------------~~-~~~~~l~~~glf~s~~fp~i~sl~~~~~g~~~------~~~s~  359 (410)
T TIGR00885       313 CLGSIFAG--------------------------GH-VGLYCLTLCSAFMSLMFPTIYGIALKGLGQDT------KYGAA  359 (410)
T ss_pred             HHHHHHcC--------------------------Ch-HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh------hhhHH
Confidence            77766642                          11 12345566778888888999999999888654      32233


Q ss_pred             HHHHHHHHhhhHHHHHHhhhhhccc------chhHHHHHHHHHHH
Q 008231          194 NRFYFAISIGSLFAVIVLVYVQDNV------GRGWGYGISAGTMV  232 (573)
Q Consensus       194 ~~~~~~~~ig~~~~~~~~~~l~~~~------g~~~~f~~~~~~~~  232 (573)
                      .+ .++ .+|+.+.|.+.|++.|..      |.+..|.++..+.+
T Consensus       360 ~l-~~~-~~Gga~~p~l~G~~~d~~~~~~~~~~~~~~~~~~~~~~  402 (410)
T TIGR00885       360 GL-VMA-IIGGGIVPPLQGFIIDMKEIAAAPAVNTSFILPLLCFA  402 (410)
T ss_pred             HH-HHH-HhccchHHHHHHHHHHHhcccccCccchHHHHHHHHHH
Confidence            33 223 399999999999999954      47788887766544

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=98.50  E-value=2.1e-06  Score=75.21  Aligned_cols=133  Identities=22%  Similarity=0.328  Sum_probs=93.1

Q ss_pred             hhhHHHHHHHHHhhhhhhhhhhcccccccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCcccchhHHHHHHH
Q 008231          378 AFLFITILLFTSLNEKVFVPLARKITHSIQGMTSLQRVGTGLIFSVIAMIVSAVIEQQRRETSVQKHIQISAFWLVPQYF  457 (573)
Q Consensus       378 ~~~~~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~lv~~~~  457 (573)
                      ....++.++..+..+++.|+..||+           .+..+..+..++.+.....              .+.+.+....+
T Consensus         5 ~~~~~~~~~~~~~~g~~~d~~g~~~-----------~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~   59 (141)
T TIGR00880         5 AGYALGQLIYSPLSGLLTDRFGRKP-----------VLLVGLFIFVLSTAMFALS--------------SNITVLIIARF   59 (141)
T ss_pred             EeehhHHHHHHhhHHHHHhhcchhH-----------HHHHHHHHHHHHHHHHHHh--------------ccHHHHHHHHH
Confidence            3445666677778888776655442           2455555555665554432              13455566778


Q ss_pred             HHHHHHHhhhhhhhheeecccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCccccccccchhhHHHHHHHHHH
Q 008231          458 LVGAGEAFVYVGQLEFFIREGPERMKSMSTGLFLSAISMGMFVSSMLVSIVDKITNKHWLRSNLNKGKLNNFYWLLAVLG  537 (573)
Q Consensus       458 l~g~~~~~~~~~~~~~~~~~~p~~~rg~~~gi~~~~~~lg~~ig~~~~~~i~~~~~~~w~~~~~~~~~~~~~~~~~a~~~  537 (573)
                      +.+++.....+....++.|..|++.|++..++.++...+|..+++.+.+.+.+..  +          ....+++.+.+.
T Consensus        60 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~--~----------~~~~~~~~~~~~  127 (141)
T TIGR00880        60 LQGFGAAFALVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFL--G----------WRAPFLFLAILA  127 (141)
T ss_pred             HHHHHHHHHHHhHHHHHHHHCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhccc--c----------hHHHHHHHHHHH
Confidence            8889888888999999999999999999999999999999999999999886432  1          234555666665


Q ss_pred             HHHHHHHHHH
Q 008231          538 LLNFMVFLFF  547 (573)
Q Consensus       538 ~l~~~~~~~~  547 (573)
                      ++..+..+.+
T Consensus       128 ~~~~~~~~~~  137 (141)
T TIGR00880       128 LAAFILLAFL  137 (141)
T ss_pred             HHHHHHHhhc
Confidence            5555544443

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=98.50  E-value=1.6e-06  Score=88.97  Aligned_cols=166  Identities=13%  Similarity=0.080  Sum_probs=121.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhHHHHHhhhc---cchhHHHHHH-HH
Q 008231           33 LAAGLILGTELSERICAMGISMNLVTYLVGDLHLSSAKSATIVTNFMGTLNLLGLLGGFLADAK---LGRYLTVAIF-AS  108 (573)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~---~Grr~~~~~~-~~  108 (573)
                      +.++......+.-.+++-.=.+++++|++ .+|++.+..+.+-..-.+.+.+.+|+-|..+||.   +||||-++.. ..
T Consensus        32 ~~li~v~~ia~Gvqf~wA~elsy~tPyl~-~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~  110 (498)
T KOG0637|consen   32 RKLISVASIAAGVQFGWALELSYLTPYLQ-SLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSL  110 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccccHHHH-HcCCCcccccccccccccccceecccccccccccccccccccchHHHhhH
Confidence            56666667777777776666778888877 8899999999888888899999999999999983   3888776655 45


Q ss_pred             HHHHHHHHHHhhccCCCCCCCCCccccccccccccchhhHHHHHHHHHHHHHhcCccccccccccccCCCCCCCchHHHh
Q 008231          109 VTALVVGLLTSATSIPSMRPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKA  188 (573)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (573)
                      ..+++.++..++..   +...-||+-+++      ..+.....++++.-+.=+..-.....+-+++.|....++      
T Consensus       111 ~i~~~l~Lig~aaD---ig~~lgd~~~~~------~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~------  175 (498)
T KOG0637|consen  111 LIAVSLFLIGYAAD---IGLLLGDNERKP------VKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDA------  175 (498)
T ss_pred             HHHHHHhhhhhHhh---hhHHhcCCcccc------cchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChh------
Confidence            56667777777643   223334443321      112345566777777777777888888999999987666      


Q ss_pred             HHH-HHHHHHHHHHhhhHHHHHHhhhh
Q 008231          189 MIF-FFNRFYFAISIGSLFAVIVLVYV  214 (573)
Q Consensus       189 r~~-~~~~~~~~~~ig~~~~~~~~~~l  214 (573)
                      +-+ +.+++.....+|+.+|...++++
T Consensus       176 ~~~~Ans~f~~f~avGnvLGY~~g~y~  202 (498)
T KOG0637|consen  176 KKTRANSVFSFFMAVGNVLGYALGSYL  202 (498)
T ss_pred             hhhccchhHHHHHHhcceeeeeccccc
Confidence            333 88888889999999998887744

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=98.43  E-value=2.8e-06  Score=91.83  Aligned_cols=186  Identities=8%  Similarity=-0.057  Sum_probs=128.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchh----hhHHHHHHHHHHHHHHhHHH----HHhhhccchhHH--HH
Q 008231           35 AGLILGTELSERICAMGISMNLVTYLVGDLHLSSAK----SATIVTNFMGTLNLLGLLGG----FLADAKLGRYLT--VA  104 (573)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~----~~~~~~~~~~~~~~~~~~~G----~laDr~~Grr~~--~~  104 (573)
                      +..++....+.+..+.-..+.++.|..+..+.+...    .+++.+...+...+.+++..    ++.||..+.+..  +.
T Consensus       274 ~l~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~~~~ip~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~~  353 (475)
T TIGR00924       274 YIVLFLEAVVFWVLYAQMPTSLNFFADNNMHHEMLGMSVPVIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKFT  353 (475)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccceEECHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHH
Confidence            344444445555666666677788877765554322    56777777777777766644    455542133333  36


Q ss_pred             HHHHHHHHHHHHHHhhccCCCCCCCCCccccccccccccchhhHHHHHHHHHHHHHhcCccccccccccccCCCCCCCch
Q 008231          105 IFASVTALVVGLLTSATSIPSMRPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPK  184 (573)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~~  184 (573)
                      +|+++.+++.+.++++....                 +.....+.+.+.+..++.++|.....|...+++.+..|++.  
T Consensus       354 ~G~~l~~~~~~~~~~~~~~~-----------------~~~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~~~--  414 (475)
T TIGR00924       354 LGMLFCGASFLTFAASIWFA-----------------DAGGLTSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQRL--  414 (475)
T ss_pred             HHHHHHHHHHHHHHHHHhhc-----------------CCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHH--
Confidence            78888888877776531110                 00112477888999999999999999999999999999988  


Q ss_pred             HHHhHHHHHHHHHHHHHhhhHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHHHHhcCc
Q 008231          185 EEKAMIFFFNRFYFAISIGSLFAVIVLVYVQDNVGRGWGYGISAGTMVVAAAILLIGTP  243 (573)
Q Consensus       185 ~~~~r~~~~~~~~~~~~ig~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~  243 (573)
                          |++.+|++..+..+|..+++.+.....+..+|...|...++.+++..++.++..|
T Consensus       415 ----~g~~~g~~~l~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  469 (475)
T TIGR00924       415 ----MGQMLGMWFLAQAMGSLLGGYLATFGAVPQGVTGVFGKIGLVTLLVGVVMALMVP  469 (475)
T ss_pred             ----HHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence                9999999999999999999999888777677887777666655555444444333

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=98.40  E-value=5.8e-06  Score=86.88  Aligned_cols=162  Identities=15%  Similarity=0.029  Sum_probs=126.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHH
Q 008231           33 LAAGLILGTELSERICAMGISMNLVTYLVGDLHLSSAKSATIVTNFMGTLNLLGLLGGFLADAKLGRYLTVAIFASVTAL  112 (573)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~  112 (573)
                      |.+..++...++...++....+....|.+..+|.++.+..+..........++.++..++++|+ |+|+++.++.++.++
T Consensus       236 rp~~~~l~~~l~~~~~~~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~-gkk~~~~~~~~~~~i  314 (467)
T COG2211         236 RPLLLLLLMNLLLFIAFNIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKF-GKKKLFLIGLLLLAV  314 (467)
T ss_pred             chHHHHHHHHHHHHHHHHHHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-chHHHHHHHHHHHHH
Confidence            4455555556666666555555566677778888888888888888888888899999999998 999999999999999


Q ss_pred             HHHHHHhhccCCCCCCCCCccccccccccccchhhHHHHHHHHHHHHHhcCccccccccccccCCCCCCCchHHHh--HH
Q 008231          113 VVGLLTSATSIPSMRPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKA--MI  190 (573)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~--r~  190 (573)
                      +.++..+...                        .+...+++...+.++|.+...+..+++++|..+-.| -+.+.  -|
T Consensus       315 ~~~~~~f~~~------------------------~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge-~~TG~R~eG  369 (467)
T COG2211         315 GYLLLYFTPA------------------------GSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGE-WKTGVRREG  369 (467)
T ss_pred             HHHHHHhhcC------------------------cchHHHHHHHHHHHHHhhccccccHHHhcchhhHHH-HHhCCCchh
Confidence            9999888631                        467788888899999999999999999999876543 22222  35


Q ss_pred             HHHHHHHHHHHhhhHHHHHHhhhhhcccch
Q 008231          191 FFFNRFYFAISIGSLFAVIVLVYVQDNVGR  220 (573)
Q Consensus       191 ~~~~~~~~~~~ig~~~~~~~~~~l~~~~g~  220 (573)
                      ..++.+.+..=+|..++..+.|++.+..|+
T Consensus       370 i~~s~~tF~~K~g~ala~~~~g~~L~~~Gy  399 (467)
T COG2211         370 IVYSGMTFFRKLGLALAGFIPGWILGAIGY  399 (467)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            566778888888999888888887766554

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=98.36  E-value=2e-05  Score=76.73  Aligned_cols=154  Identities=15%  Similarity=0.051  Sum_probs=107.7

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHH
Q 008231           32 WLAAGLILGTELSERICAMGISMNLVTYLVGDLHLSSAKSATIVTNFMGTLNLLGLLGGFLADAKLGRYLTVAIFASVTA  111 (573)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~  111 (573)
                      |-.+...+....... ..|.. +.-.+.+++.+|+|.+|...+...-.++..+ .++.|.+.|++ |.+.++.+|.+...
T Consensus         2 W~~l~a~~~v~~~~G-t~Y~F-s~yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~-G~~~G~l~d~~-gp~~~l~iG~~~~~   77 (250)
T PF06813_consen    2 WLSLVASIWVQLCSG-TTYTF-SAYSPQLKSRLGYSQSQLNTLSTAGDIGSYF-GILAGLLYDRF-GPWVVLLIGAVLGF   77 (250)
T ss_pred             hhhHHHHHHHHHhcC-cccch-hhhhHHHHHHhCCCHHHHHHHHHHHHHHhhc-cHHHHHHHHhc-chHHHHHHHHHHHH
Confidence            444333344433332 33443 4455688999999999999999888888886 48889999998 99999999999999


Q ss_pred             HHHHHHHhhccCCCCCCCCCccccccccccccchhhHHHHHHHHHHHHHhcCccccccccccccCCCCCCCchHHHhHHH
Q 008231          112 LVVGLLTSATSIPSMRPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKAMIF  191 (573)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~  191 (573)
                      +|..++.++-+-.                   -.....+.+.+..++.+.+...+.........+.||+ +      ||.
T Consensus        78 ~GY~~~~l~~~~~-------------------i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP~-~------RG~  131 (250)
T PF06813_consen   78 VGYGLLWLAVSGR-------------------IPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFPR-S------RGT  131 (250)
T ss_pred             HHHHHHHHHHhCc-------------------cCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCcc-c------cCc
Confidence            9998887753211                   0113556677777777777666655555555678884 5      999


Q ss_pred             HHHHHHHHHHhhhHHHHHHhhhhh
Q 008231          192 FFNRFYFAISIGSLFAVIVLVYVQ  215 (573)
Q Consensus       192 ~~~~~~~~~~ig~~~~~~~~~~l~  215 (573)
                      +.++.-....+++.+-..+-..+.
T Consensus       132 vvgilk~~~GLSaai~t~i~~~~f  155 (250)
T PF06813_consen  132 VVGILKGFFGLSAAIFTQIYSAFF  155 (250)
T ss_pred             eehhhhHHHHhHHHHHHHHHHHHc
Confidence            999977777776665544444333

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=98.36  E-value=0.00014  Score=75.34  Aligned_cols=157  Identities=14%  Similarity=0.009  Sum_probs=110.9

Q ss_pred             HHHHHHHHHhhh-cCCCchhhh-HHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHhhccCCCCCCC
Q 008231           52 ISMNLVTYLVGD-LHLSSAKSA-TIVTNFMGTLNLLGLLGGFLADAKLGRYLTVAIFASVTALVVGLLTSATSIPSMRPP  129 (573)
Q Consensus        52 ~~~~l~~yl~~~-~~~s~~~~~-~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (573)
                      .-+++.+|+.+. .|++..|.. -+.-+..-.+....++...+.|.. +.|++++++.+...+...++.+..        
T Consensus        22 sEPfl~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l-~Ykpviil~~~~~i~t~~lll~~~--------   92 (412)
T PF01770_consen   22 SEPFLTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYL-RYKPVIILQALSYIITWLLLLFGT--------   92 (412)
T ss_pred             CCccchHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHHHHHHC--------
Confidence            346788999876 999999886 455556667777888889999997 999999999888887777777653        


Q ss_pred             CCccccccccccccchhhHHHHHHHHHHHHHhcCccccccccccccCCCCCCCchHHHhHHHHHHHHHHHHHhhhHHHHH
Q 008231          130 QCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKAMIFFFNRFYFAISIGSLFAVI  209 (573)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~  209 (573)
                                        +...+-+.-++.|++.+.. .+..+++-...|+++      --++.+....+.-+|-.++.+
T Consensus        93 ------------------sv~~mq~~q~~yg~~~a~e-vay~sYiys~v~~~~------yq~vts~~raa~l~g~~~s~~  147 (412)
T PF01770_consen   93 ------------------SVLAMQLMQFFYGLATAAE-VAYYSYIYSVVDKEH------YQKVTSYTRAATLVGRFISSL  147 (412)
T ss_pred             ------------------cHHHHHHHHHHHHHHHHHH-HHHHHHheeecCHHH------HHHHHHHHHHHHHHHHHHHHH
Confidence                              5567777788888877774 445566666666655      566666667777777777766


Q ss_pred             Hhhhhhc--ccchhHHHHHHHHHHHHHHHHHHhcC
Q 008231          210 VLVYVQD--NVGRGWGYGISAGTMVVAAAILLIGT  242 (573)
Q Consensus       210 ~~~~l~~--~~g~~~~f~~~~~~~~~~~~~~~~~~  242 (573)
                      ++-.+..  ..++....+++.....+++++.++.+
T Consensus       148 lgQllvs~~~~sy~~L~~isl~~~~~a~~~~~fLP  182 (412)
T PF01770_consen  148 LGQLLVSFGGVSYFQLNYISLASVSLALLIALFLP  182 (412)
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcC
Confidence            6655443  33466677777766666665544433

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=98.35  E-value=1.1e-05  Score=79.90  Aligned_cols=152  Identities=22%  Similarity=0.176  Sum_probs=113.7

Q ss_pred             HHHHHHHHHHHHHHhhhcCCCc--hhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHhhccCC
Q 008231           47 ICAMGISMNLVTYLVGDLHLSS--AKSATIVTNFMGTLNLLGLLGGFLADAKLGRYLTVAIFASVTALVVGLLTSATSIP  124 (573)
Q Consensus        47 ~~~~~~~~~l~~yl~~~~~~s~--~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~~  124 (573)
                      ..........+.+ ..+++.+.  .+.+++.+.+.+...++.++.|+++||+ |||+.+..+.....++.+++.+..+  
T Consensus        16 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~~~~~~~~~~~~~~--   91 (338)
T COG0477          16 LDLGLLSPALPLL-LSTLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRY-GRRKVLIIGLLLFLLGTLLLALAPN--   91 (338)
T ss_pred             HhcchHHHHHHHH-HHHcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccc-cchHHHHHHHHHHHHHHHHHHhCcc--
Confidence            3333333344444 33555555  5789999999999999999999999998 9998888888765666566665431  


Q ss_pred             CCCCCCCccccccccccccchhhHHHHHHHHHHHHHhcCccccccccccccCCCCC-CCchHHHhHHHHHHHHHH-HHHh
Q 008231          125 SMRPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDT-SDPKEEKAMIFFFNRFYF-AISI  202 (573)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~-~~~~~~~~r~~~~~~~~~-~~~i  202 (573)
                                            .....+++.|++.|++.+...+...+++.|..|+ +.      |+...+.... ...+
T Consensus        92 ----------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~  143 (338)
T COG0477          92 ----------------------VGLALLLILRLLQGLGGGGLLPVASALLSEWFPEATE------RGLAVGLVTLGAGAL  143 (338)
T ss_pred             ----------------------chHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhH------HHHHHHHHHHHHHHH
Confidence                                  2467888899999999999999999999999987 44      8998888777 5888


Q ss_pred             hhHHHHHHhhhhhcc--cchhHHHHHHHHH
Q 008231          203 GSLFAVIVLVYVQDN--VGRGWGYGISAGT  230 (573)
Q Consensus       203 g~~~~~~~~~~l~~~--~g~~~~f~~~~~~  230 (573)
                      |..++|.+++.+...  .+|++.|.+....
T Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (338)
T COG0477         144 GLALGPLLAGLLLGALLWGWRAAFLLAALL  173 (338)
T ss_pred             HHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence            888898777766543  5688866555443

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.34  E-value=1.1e-06  Score=88.74  Aligned_cols=148  Identities=22%  Similarity=0.241  Sum_probs=122.6

Q ss_pred             eecccccchhhHHHHHHHHHhhhhhhhhhhcccccccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCcccch
Q 008231          370 TVPSGSLSAFLFITILLFTSLNEKVFVPLARKITHSIQGMTSLQRVGTGLIFSVIAMIVSAVIEQQRRETSVQKHIQISA  449 (573)
Q Consensus       370 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~  449 (573)
                      +...+++.+.-.+..++..|+++.+.++++.|.-           +.+|+..+..+.+++++.+              +.
T Consensus       105 ~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ip-----------m~~Gl~vmf~sTilFafg~--------------sy  159 (464)
T KOG3764|consen  105 NTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIP-----------MVAGLFVMFLSTILFAFGN--------------SY  159 (464)
T ss_pred             ccchhHHHHHHHHHHHHhcccchhhHHHhccccH-----------HHHHHHHHHHHHHHHHHcc--------------hh
Confidence            5566778888889999999999999887776642           8999999999999998864              45


Q ss_pred             hHHHHHHHHHHHHHHhhhhhhhheeecccCchh-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCccccccccchhhH
Q 008231          450 FWLVPQYFLVGAGEAFVYVGQLEFFIREGPERM-KSMSTGLFLSAISMGMFVSSMLVSIVDKITNKHWLRSNLNKGKLNN  528 (573)
Q Consensus       450 ~~lv~~~~l~g~~~~~~~~~~~~~~~~~~p~~~-rg~~~gi~~~~~~lg~~ig~~~~~~i~~~~~~~w~~~~~~~~~~~~  528 (573)
                      +.+++.-.++|+|.++......+++.+.+|++. ||+++|+...+.++|..+||.++|.+++..+            ...
T Consensus       160 ~~l~vAR~LQgvgsA~~~tsglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~G------------k~a  227 (464)
T KOG3764|consen  160 PMLFVARSLQGVGSAFADTSGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAG------------KSA  227 (464)
T ss_pred             HHHHHHHHHhhhhHHHHHhhhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcC------------CcC
Confidence            578889999999999999999999999999765 6999999999999999999999999988643            234


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcchh
Q 008231          529 FYWLLAVLGLLNFMVFLFFAMKHQYN  554 (573)
Q Consensus       529 ~~~~~a~~~~l~~~~~~~~~~~~~~~  554 (573)
                      .|.+++.++++-..+-++..+.++..
T Consensus       228 PFlVL~~v~Lld~~L~l~vi~p~~~~  253 (464)
T KOG3764|consen  228 PFLVLAIVLLLDGALQLLVIEPTEMD  253 (464)
T ss_pred             cHHHHHHHHHHHHHHHHheeCccccC
Confidence            68888888888877766665544433

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=98.32  E-value=1.6e-05  Score=84.40  Aligned_cols=169  Identities=12%  Similarity=-0.026  Sum_probs=110.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHH
Q 008231           33 LAAGLILGTELSERICAMGISMNLVTYLVGDLHLSSAKSATIVTNFMGTLNLLGLLGGFLADAKLGRYLTVAIFASVTAL  112 (573)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~  112 (573)
                      +.++......++....++......|.++++.+|.+..+.++.......+..++..+.+++.++. ++++.+.....+..+
T Consensus       218 ~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~-~~~~~~~~~~~~~~i  296 (413)
T PRK15403        218 RLFLTGAATLSLSYIPMMSWVAVSPVILIDAGGMTTSQFAWTQVPVFGAVIVANAIVARFVKDP-TEPRFIWRAVPIQLV  296 (413)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhChHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccC-CchhHHHHHHHHHHH
Confidence            4566666666667777777777889999999999999999998878888888888888876554 444444333333344


Q ss_pred             HHHHHHhhcc-CCCCCCCCCccccccccccccchhhHHHHHHHHHHHHHhcCccccccccccccCCCCCCCchHHHhHHH
Q 008231          113 VVGLLTSATS-IPSMRPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKAMIF  191 (573)
Q Consensus       113 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~  191 (573)
                      +..++..... .+                      .+....+++.++.++|.+...|+..+..-  .+.+.+     +++
T Consensus       297 g~~l~~~~~~~~~----------------------~~~~~~~~~~~l~~~G~~~~~p~~~~~al--~~~~~~-----~G~  347 (413)
T PRK15403        297 GLALLIVGNLLWP----------------------HVWLWSVLGTSLYAFGIGLIFPTLFRFTL--FSNNLP-----KGT  347 (413)
T ss_pred             HHHHHHHHHHHcc----------------------ccHHHHHHHHHHHHHHHHHHhHHHHHHHh--ccCCCC-----CcH
Confidence            4433332210 01                      12333566777888888888777764322  222211     677


Q ss_pred             HHHHHHHHHHhhhHHHHHHhhhhhcccchhHHHHHHHHHHH
Q 008231          192 FFNRFYFAISIGSLFAVIVLVYVQDNVGRGWGYGISAGTMV  232 (573)
Q Consensus       192 ~~~~~~~~~~ig~~~~~~~~~~l~~~~g~~~~f~~~~~~~~  232 (573)
                      +.++++.....+...++..++++.+. +-.++|....+...
T Consensus       348 a~a~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~  387 (413)
T PRK15403        348 VSASLNMVILMVMAVSVEIGRWLWFN-GGRLPFHLLAVVAG  387 (413)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHc-CCchHHHHHHHHHH
Confidence            88888888888888888888888664 55666665544433

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=98.28  E-value=1.8e-05  Score=81.11  Aligned_cols=171  Identities=18%  Similarity=0.176  Sum_probs=134.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHH
Q 008231           39 LGTELSERICAMGISMNLVTYLVGDLHLSSAKSATIVTNFMGTLNLLGLLGGFLADAKLGRYLTVAIFASVTALVVGLLT  118 (573)
Q Consensus        39 ~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~  118 (573)
                      +...++..+++++==..+-+|--+.+|++..|...+.+.+..+..++-...|++..|..+++++..+++.+.+++..+..
T Consensus       214 ~~fl~l~t~a~~~QD~iLEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii  293 (403)
T PF03209_consen  214 FVFLFLGTLAFFMQDVILEPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALII  293 (403)
T ss_pred             HHHHHHHHHHHHhhHHHcCCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHH
Confidence            33333444454444456777888899999999999999999999999999999988655888888899988888887776


Q ss_pred             hhccCCCCCCCCCccccccccccccchhhHHHHHHHHHHHHHhcCccccccccccccCCCCCCCchHHHhHHHHHHHHHH
Q 008231          119 SATSIPSMRPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKAMIFFFNRFYF  198 (573)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~  198 (573)
                      ++...                       .+.+.+..+.++.|++.|.+.....+...|+..+++      .|..+|.+..
T Consensus       294 ~a~~~-----------------------~~~~~~~~~~~l~G~g~G~f~vgals~mM~lt~~~~------aG~~mG~WGa  344 (403)
T PF03209_consen  294 LAGPL-----------------------GSPWLFRPGVFLLGLGNGLFTVGALSLMMDLTSAGR------AGLFMGAWGA  344 (403)
T ss_pred             HHHhc-----------------------ccchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCcc------hhHHHHHHHH
Confidence            65422                       256788999999999999999888899999998887      8999999999


Q ss_pred             HHHhhhHHHHHHhhhhhcc----------cchhHHHHHHHHHHHHHHHHH
Q 008231          199 AISIGSLFAVIVLVYVQDN----------VGRGWGYGISAGTMVVAAAIL  238 (573)
Q Consensus       199 ~~~ig~~~~~~~~~~l~~~----------~g~~~~f~~~~~~~~~~~~~~  238 (573)
                      +..+...+|..++|.+.|.          .+|..+|.+-++..+++.++.
T Consensus       345 aQA~A~Glg~~~GG~~~D~~~~~~~~~~~~aY~~VF~lEa~ll~~a~~ll  394 (403)
T PF03209_consen  345 AQAIARGLGTFLGGALRDLVRALFGNSPALAYGVVFALEAVLLLAALVLL  394 (403)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHH
Confidence            9999999998888876542          246677777777666655543

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>PRK11462 putative transporter; Provisional

Probab=98.24  E-value=3e-05  Score=83.41  Aligned_cols=160  Identities=11%  Similarity=0.014  Sum_probs=95.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHH
Q 008231           34 AAGLILGTELSERICAMGISMNLVTYLVGDLHLSSAKSATIVTNFMGTLNLLGLLGGFLADAKLGRYLTVAIFASVTALV  113 (573)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~  113 (573)
                      ....++...++..............|.+..+| +....+.+...+.+...++.+++++++||+ |+|+++..+..+..+.
T Consensus       229 ~~~~l~~~~~~~~~~~~~~~~~~~y~~~y~~g-~~~~~~~~l~~~~i~~iig~~l~~~l~~r~-gkk~~~~~~~~~~~~~  306 (460)
T PRK11462        229 QWRIVGLLTIFNILAVCVRGGAMMYYVTWILG-TPEVFVAFLTTYCVGNLIGSALAKPLTDWK-CKVTIFWWTNALLAVI  306 (460)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHhhhhhhhhcC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ChHHHHHHHHHHHHHH
Confidence            33444444444444443333333333333344 333445667778888889999999999998 9998877555544443


Q ss_pred             HHHHHhhccCCCCCCCCCccccccccccccchhhHHHHHHHHHHHHHhcCccccccccccccCCCCCCCchHHHhH--HH
Q 008231          114 VGLLTSATSIPSMRPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKAM--IF  191 (573)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~r--~~  191 (573)
                      ..+..+...                        .+...+++..++.|++.+...+...++++|..+.++ -+.+.|  +.
T Consensus       307 ~~~~~~~~~------------------------~~~~~~~~~~~l~g~~~~~~~~l~~~m~ad~~d~~e-~~tG~r~~g~  361 (460)
T PRK11462        307 SLAMFFVPM------------------------QASITMFVFIFVIGVLHQLVTPIQWVMMSDTVDYGE-WCNGKRLTGI  361 (460)
T ss_pred             HHHHHHhch------------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhH-HhcCCCchHH
Confidence            333322210                        122233444456677777777766778888766332 222224  34


Q ss_pred             HHHHHHHHHHhhhHHHHHHhhhhhcccch
Q 008231          192 FFNRFYFAISIGSLFAVIVLVYVQDNVGR  220 (573)
Q Consensus       192 ~~~~~~~~~~ig~~~~~~~~~~l~~~~g~  220 (573)
                      .++.+.+...+|..+|+.++|++.+..|+
T Consensus       362 ~~a~~~f~~Klg~alg~~i~g~iL~~~Gy  390 (460)
T PRK11462        362 SFAGTLFVLKLGLAFGGALIGWMLAYGGY  390 (460)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            45667788899999999998887765554

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=98.20  E-value=2.3e-05  Score=83.86  Aligned_cols=206  Identities=11%  Similarity=-0.073  Sum_probs=142.4

Q ss_pred             CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hcCCCch------h----hhHHHHHHHHHHHHHHhHHHHHhhhcc
Q 008231           29 TGGWLAAGLILGTELSERICAMGISMNLVTYLVG-DLHLSSA------K----SATIVTNFMGTLNLLGLLGGFLADAKL   97 (573)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~-~~~~s~~------~----~~~~~~~~~~~~~~~~~~~G~laDr~~   97 (573)
                      +.-.+.++.++.+.++.+++++.+..+.+.|+.+ .+|-++.      +    ..+....+.+...+.+++--++.+|+ 
T Consensus       254 ~~mP~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~s~~~~i~s~~l~~l~~~~-  332 (477)
T TIGR01301       254 KYLPRPVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLMLNSVVLGITSIGMEKLCRGW-  332 (477)
T ss_pred             HHCCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-
Confidence            3455688999999999999999999999999875 3443321      1    12333444555556666777889888 


Q ss_pred             c-hhHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCcccccccccc-ccchhhHHHHHHHHHHHHHhcCcccccccccccc
Q 008231           98 G-RYLTVAIFASVTALVVGLLTSATSIPSMRPPQCDDYRRKHHQC-IEANGKQLAMLYAALYTIALGGGGIKSNVSGFGS  175 (573)
Q Consensus        98 G-rr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~  175 (573)
                      | ||++..++.++.+++.....+.++.+.-.     ++ ...++. ..++....+..++...+.|+..+.....-.++++
T Consensus       333 g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~-----~~-~~~~~~~~~~~~~~~~~~l~~~~~~Gi~~A~~~siPfal~s  406 (477)
T TIGR01301       333 GAGKRLWGIVNIILAICLAATVLVTYVAKNS-----RY-YDGDGESLPPPTGIKASALIVFAILGIPLAITYSIPFALAS  406 (477)
T ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHhhhhcc-----cc-ccccccccCcchhhHHHHHHHHHHhhHHHHHHHHHhHHHHH
Confidence            8 47777889888888887776543211000     00 000000 1111122466777778899999999999999999


Q ss_pred             CCCCCCCchHHHhHHHHHHHHHHHHHhhhHHHHHHhhhhhcccc--hhHHHHHHHHHHHHHHHHHHhcCccc
Q 008231          176 DQFDTSDPKEEKAMIFFFNRFYFAISIGSLFAVIVLVYVQDNVG--RGWGYGISAGTMVVAAAILLIGTPWY  245 (573)
Q Consensus       176 ~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~~~~~l~~~~g--~~~~f~~~~~~~~~~~~~~~~~~~~~  245 (573)
                      +..+++..+    .|..+|+.|.++.+...+..+..|.+.+..|  -.+++.+.++.++++.+..++..|+.
T Consensus       407 ~~~~~~~~~----~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~~~~~~~~~~  474 (477)
T TIGR01301       407 IRSSNLGAG----QGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLLALILLPRP  474 (477)
T ss_pred             HHccccCCC----CcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHHHHHHhCCCC
Confidence            999965422    6999999999999999999988888666555  45677888888888887777766643

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>TIGR00806 rfc RFC reduced folate carrier

Probab=98.18  E-value=4.8e-05  Score=80.02  Aligned_cols=111  Identities=13%  Similarity=0.014  Sum_probs=92.4

Q ss_pred             ccccchhhHHHHHHHHHhhhhhhhhhhcccccccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCcccchhHH
Q 008231          373 SGSLSAFLFITILLFTSLNEKVFVPLARKITHSIQGMTSLQRVGTGLIFSVIAMIVSAVIEQQRRETSVQKHIQISAFWL  452 (573)
Q Consensus       373 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~l  452 (573)
                      .+.+......+..++....+++.|+++-|+           .+..+++..++..+++++..              +++.+
T Consensus        64 ~G~I~s~F~ysYal~qIp~GlLaDrlG~K~-----------vL~l~~l~Wsl~t~L~~fa~--------------Sl~~L  118 (511)
T TIGR00806        64 TNEIIPVLPYSHLAVLVPVFLLTDYLRYKP-----------VLVLQALSFVCVWLLLLLGT--------------SVWHM  118 (511)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHhCchH-----------HHHHHHHHHHHHHHHHHHHH--------------HHHHH
Confidence            556677777888888888888877765553           36777777777777777653              56778


Q ss_pred             HHHHHHHHHHHHhhhhhhhheeecccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008231          453 VPQYFLVGAGEAFVYVGQLEFFIREGPERMKSMSTGLFLSAISMGMFVSSMLVSIVD  509 (573)
Q Consensus       453 v~~~~l~g~~~~~~~~~~~~~~~~~~p~~~rg~~~gi~~~~~~lg~~ig~~~~~~i~  509 (573)
                      .+.-++.|++++... ..+.++...+|++.|++++|+.+....+|.++++.+++.+.
T Consensus       119 ~i~R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll~  174 (511)
T TIGR00806       119 QLMEVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLLV  174 (511)
T ss_pred             HHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            888999999999999 99999999999999999999999999999999999999843

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=98.17  E-value=3.1e-05  Score=78.81  Aligned_cols=156  Identities=14%  Similarity=0.088  Sum_probs=116.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHH
Q 008231           34 AAGLILGTELSERICAMGISMNLVTYLVGDLHLSSAKSATIVTNFMGTLNLLGLLGGFLADAKLGRYLTVAIFASVTALV  113 (573)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~  113 (573)
                      .++...++.|+-.-.--.+.++++.|+.+..|++..+++..++.+..+..++..++-++..|+ ...|.+.+..++..+-
T Consensus       237 ~~~~gvl~~FlYVG~Eva~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~-~~~k~Laf~a~~~ill  315 (422)
T COG0738         237 HLRLGVLAIFLYVGAEVAIGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRI-KPEKYLAFYALIAILL  315 (422)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHHHH
Confidence            344444454544433445668899999988999999999999999999999999999999998 7788877776655555


Q ss_pred             HHHHHhhccCCCCCCCCCccccccccccccchhhHHHHHHHHHHHHHhcCccccccccccccCCCCCCCchHHHhHHHHH
Q 008231          114 VGLLTSATSIPSMRPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKAMIFFF  193 (573)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  193 (573)
                      ++..+++.                          +. .-+.+.++.|+..+...|+..+...+..|++.+     .+   
T Consensus       316 ~~~~~l~~--------------------------g~-v~~~~l~~ig~F~simfPTIfslal~~l~~~ts-----~~---  360 (422)
T COG0738         316 LLAVALIG--------------------------GV-VALYALFLIGLFNSIMFPTIFSLALKNLGEHTS-----VG---  360 (422)
T ss_pred             HHHHHHhc--------------------------Ch-HHHHHHHHHHHHhHHHHHHHHHHHHhccCcccc-----cc---
Confidence            55555542                          22 233345678999999999999999999984431     22   


Q ss_pred             HHHHHHHHhhhHHHHHHhhhhhcccchhHHHH
Q 008231          194 NRFYFAISIGSLFAVIVLVYVQDNVGRGWGYG  225 (573)
Q Consensus       194 ~~~~~~~~ig~~~~~~~~~~l~~~~g~~~~f~  225 (573)
                      |..-....+|+.+-|.+-|++.|..|-...+.
T Consensus       361 s~~l~maivGGAiiP~l~G~i~d~~g~~~~~~  392 (422)
T COG0738         361 SGLLVMAIVGGAIIPPLQGVIADMFGIQLTFL  392 (422)
T ss_pred             ceeeeeheecchHHHHHHHHHHHhhhhHHHHH
Confidence            22223456889999999999999999887766

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=98.16  E-value=0.004  Score=64.65  Aligned_cols=61  Identities=20%  Similarity=0.224  Sum_probs=50.5

Q ss_pred             chhHHHHHHHHHHHHHHhhhhhhhheeecccCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008231          448 SAFWLVPQYFLVGAGEAFVYVGQLEFFIREGPERMKSMSTGLFLSAISMGMFVSSMLVSIV  508 (573)
Q Consensus       448 ~~~~lv~~~~l~g~~~~~~~~~~~~~~~~~~p~~~rg~~~gi~~~~~~lg~~ig~~~~~~i  508 (573)
                      +.|.+++..+..|+..+..+...+..+.+..|++.|..++|.....-++|..+++.+.-.+
T Consensus       334 si~ivf~lif~eGLlGGa~YVNtF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~l  394 (402)
T PF02487_consen  334 SIWIVFVLIFYEGLLGGASYVNTFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPL  394 (402)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            4566666777888888888888888899999999999999999999888888887775444

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=98.16  E-value=3.1e-05  Score=84.23  Aligned_cols=173  Identities=13%  Similarity=-0.030  Sum_probs=113.1

Q ss_pred             HHHHHHHHHHHHHHHHHhh--hcCCCc------hhhhHHHHHHHHHHHHHHhHH----HHHhhhccchhHHHHHHHHHHH
Q 008231           44 SERICAMGISMNLVTYLVG--DLHLSS------AKSATIVTNFMGTLNLLGLLG----GFLADAKLGRYLTVAIFASVTA  111 (573)
Q Consensus        44 ~~~~~~~~~~~~l~~yl~~--~~~~s~------~~~~~~~~~~~~~~~~~~~~~----G~laDr~~Grr~~~~~~~~~~~  111 (573)
                      +....+|.+..-.+.++..  ..+.+.      ...+++.+...+...++.++.    +++.||+ +..+.+.+++++.+
T Consensus       283 ~~~i~f~~~~~q~~~~l~~~~~~~~~~~~~g~~i~~~~~~s~n~i~iil~~p~~~~~~~~l~~r~-~~~~~~~~G~~l~~  361 (500)
T PRK09584        283 LEAIIFFVLYSQMPTSLNFFAIRNVEHSILGIAVEPEQYQALNPFWIMIGSPILAAIYNKMGDRL-PMPHKFAIGMVLCS  361 (500)
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHhccccccceEECHHHHHHHhHHHHHHHHHHHHHHHHHhCcCC-CcHHHHHHHHHHHH
Confidence            4445566666666666543  111111      224555566665555565555    6667776 77788999999999


Q ss_pred             HHHHHHHhhccCCCCCCCCCccccccccccccchhhHHHHHHHHHHHHHhcCccccccccccccCCCCCCCchHHHhHHH
Q 008231          112 LVVGLLTSATSIPSMRPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKAMIF  191 (573)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~  191 (573)
                      ++.+.++++.....                 .....+.+.+.+..++.|+|.....|...+++.+..|++.      |++
T Consensus       362 l~f~~l~~~~~~~~-----------------~~~~vs~~~~~~~~~l~~~ge~~~~p~g~s~~~~~aP~~~------rg~  418 (500)
T PRK09584        362 GAFLVLPLGAKFAN-----------------DAGIVSVNWLIASYGLQSIGELMISGLGLAMVAQLVPQRL------MGF  418 (500)
T ss_pred             HHHHHHHHHHHhcC-----------------CCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCcHHH------HHH
Confidence            99888877643210                 0011345578888999999999999999999999999988      999


Q ss_pred             HHHHHHHHHHhhhHHHHHHhhhhhc----------ccchhHHHHHHHHHHHHHHHHHHh
Q 008231          192 FFNRFYFAISIGSLFAVIVLVYVQD----------NVGRGWGYGISAGTMVVAAAILLI  240 (573)
Q Consensus       192 ~~~~~~~~~~ig~~~~~~~~~~l~~----------~~g~~~~f~~~~~~~~~~~~~~~~  240 (573)
                      .+|.+..+..+|..++..+.+....          ..++.+.|...++..++..++++.
T Consensus       419 ~~g~~~l~~a~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~a~~~~~  477 (500)
T PRK09584        419 IMGSWFLTTAGAALIAGYVANLMAVPDNVTDPLMSLEVYGRVFLQIGIATAVIAVLMLL  477 (500)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            9999888887877777666643221          123566776555544433333333

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=98.11  E-value=2.2e-05  Score=84.99  Aligned_cols=149  Identities=9%  Similarity=-0.034  Sum_probs=103.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhcCCCc----hhhhHHHHHHHHHHHHHHhHHHHHhhhccchhH-------HHHHHHHHH
Q 008231           42 ELSERICAMGISMNLVTYLVGDLHLSS----AKSATIVTNFMGTLNLLGLLGGFLADAKLGRYL-------TVAIFASVT  110 (573)
Q Consensus        42 ~~~~~~~~~~~~~~l~~yl~~~~~~s~----~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~-------~~~~~~~~~  110 (573)
                      ..+....+......++.|.++..+.+.    ...+++.+...+...+..++.|++.||+ |+|+       -+.+|+++.
T Consensus       278 ~~~f~~~~~q~~~~l~l~~~~~~~~~~~G~~i~~~~~~~~n~~~iii~~pl~~~l~~rl-~~r~~~~~~~~k~~~G~~l~  356 (489)
T PRK10207        278 AVVFYILYAQMPTSLNFFAINNVHHEILGFSINPVSFQALNPFWVVVASPILAGIYTHL-GSKGKDLSMPMKFTLGMFLC  356 (489)
T ss_pred             HHHHHHHHHHcccHHHHHHHHhccccccceEECHHHHHhHhHHHHHHHHHHHHHHHHHH-hhCCCCCCcHHHHHHHHHHH
Confidence            334445555555677777775333321    1234555556666778888899999998 8887       377777777


Q ss_pred             HHHHHHHHhhcc-CCCCCCCCCccccccccccccchhhHHHHHHHHHHHHHhcCccccccccccccCCCCCCCchHHHhH
Q 008231          111 ALVVGLLTSATS-IPSMRPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKAM  189 (573)
Q Consensus       111 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~r  189 (573)
                      +++.+.++.... ...                 .....+.+.+...-++.|+|.+...|...+++.+..|++.      +
T Consensus       357 ~~~~~~~~~~~~~~~~-----------------~~~~~s~~~~i~~~~l~g~Ge~~~~~~g~~~~~~~aP~~~------~  413 (489)
T PRK10207        357 SLGFLTAAAAGMWFAD-----------------AQGLTSPWFIVLVYLFQSLGELFISALGLAMIAALVPQHL------M  413 (489)
T ss_pred             HHHHHHHHHHHHhhcC-----------------CCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhChHHH------H
Confidence            777654432110 000                 0001245666777888999999999999999999999988      9


Q ss_pred             HHHHHHHHHHHHhhhHHHHHHhhhh
Q 008231          190 IFFFNRFYFAISIGSLFAVIVLVYV  214 (573)
Q Consensus       190 ~~~~~~~~~~~~ig~~~~~~~~~~l  214 (573)
                      +.++++++...++|..+|..++...
T Consensus       414 g~~~g~~~l~~~ig~~lg~~l~~~~  438 (489)
T PRK10207        414 GFILGMWFLTQAAAFLLGGYVATFT  438 (489)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999998887655

>PF12832 MFS_1_like: MFS_1 like family

Probab=98.06  E-value=2.7e-05  Score=61.20  Aligned_cols=66  Identities=21%  Similarity=0.045  Sum_probs=55.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHH
Q 008231           42 ELSERICAMGISMNLVTYLVGDLHLSSAKSATIVTNFMGTLNLLGLLGGFLADAKLGRYLTVAIFASV  109 (573)
Q Consensus        42 ~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~  109 (573)
                      -++...+...+.++++.|++ +.|+|..|.|.+.++..+...++++++|+++||+ ||++.++....+
T Consensus         9 yf~~f~~~g~~~Pfl~~~~~-~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~-~~~~~~l~~~~~   74 (77)
T PF12832_consen    9 YFFYFAALGCLYPFLPLYLK-QLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKF-GKRKVILLGSLF   74 (77)
T ss_pred             HHHHHHHHHHHHhhhhHhhh-hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CccHHHHHHHHH
Confidence            34444555567888999988 5899999999999999999999999999999998 888887766544

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=98.05  E-value=0.027  Score=59.56  Aligned_cols=188  Identities=14%  Similarity=-0.028  Sum_probs=102.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHH
Q 008231           33 LAAGLILGTELSERICAMGISMNLVTYLVGDLHLSSAKSATIVTNFMGTLNLLGLLGGFLADAKLGRYLTVAIFASVTAL  112 (573)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~  112 (573)
                      +..+.+....++..++--+..-..+.|+.+-+.-+-.-.+..--.-.+...+..+.-|.+.||. .|.+++..+..+--+
T Consensus         2 ~~~~~Ly~sh~ls~w~dR~w~Fa~~L~L~~i~p~sLl~~siygl~~~~~~~~f~~~vG~~iD~~-~Rl~~~~~~l~~Qn~   80 (432)
T PF06963_consen    2 RALWRLYLSHFLSTWGDRMWEFAVPLFLISIFPGSLLPVSIYGLVRSLSAILFGPWVGRWIDRS-PRLKVIRTSLVVQNL   80 (432)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhhHHHHHHHhCC-cchhhHHHHHHHHHH
Confidence            3456677777777777666666677788766443333333333334556667778889999998 899887776554332


Q ss_pred             HH----HHHHhhccCCCCCCCCCccccccccccccchhhHHHHHHH-HHHHHHhcCccccccccccccCCCCCCCchHHH
Q 008231          113 VV----GLLTSATSIPSMRPPQCDDYRRKHHQCIEANGKQLAMLYA-ALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEK  187 (573)
Q Consensus       113 ~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~g~g~~~~~~~~~~~~~~~~~~~~~~~~~  187 (573)
                      +.    .+....-..+..           ..+   +. .....+++ ..++..+..=.......+.=.||...-..+++.
T Consensus        81 sv~~s~~~~~~l~~~~~~-----------~~~---~~-~~~~~l~~~~~~~~~i~~Las~~~~iavERDWVvvi~~~~~~  145 (432)
T PF06963_consen   81 SVAASCALFLLLLSYPSS-----------SSQ---SS-WLFIALFALLILLGAIERLASIANTIAVERDWVVVIAGGDPG  145 (432)
T ss_pred             HHHHHHHHHHHHHhCCcc-----------ccc---cc-hHHHHHHHHHHHHHHHHHHHHhhhhheeccchhhhhcCCChh
Confidence            22    222211111100           000   01 11222222 222222222222222333334443221111112


Q ss_pred             hHHHHHHHHHHHHHhhhHHHHHHhhhhhcccchhHHHHHHHHHHHHHHH
Q 008231          188 AMIFFFNRFYFAISIGSLFAVIVLVYVQDNVGRGWGYGISAGTMVVAAA  236 (573)
Q Consensus       188 ~r~~~~~~~~~~~~ig~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~  236 (573)
                      .+.+..+...-.--+.-++||++.|.+....|.+....+.++..++++.
T Consensus       146 ~La~~NA~mRRIDL~ckllaPl~vG~l~t~~s~~~~~~~i~~~N~~S~~  194 (432)
T PF06963_consen  146 ALARMNATMRRIDLFCKLLAPLFVGLLMTFASPVIAAIFIAGWNLASVF  194 (432)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHHH
Confidence            2677777777777888999999999999888888776666655555544

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=98.04  E-value=7.1e-05  Score=80.45  Aligned_cols=134  Identities=13%  Similarity=0.114  Sum_probs=86.7

Q ss_pred             ccchhhHHHHHHHHHhhhhhhhhh-hcccccccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCcccchhHHH
Q 008231          375 SLSAFLFITILLFTSLNEKVFVPL-ARKITHSIQGMTSLQRVGTGLIFSVIAMIVSAVIEQQRRETSVQKHIQISAFWLV  453 (573)
Q Consensus       375 ~~~~~~~~~~l~~~~~~~~~~~~~-~~r~~~~~~~~~~~~~~~~g~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~lv  453 (573)
                      .+.........+...+.+++.||+ +||+           .+..|.++..++.+++....            . ....+.
T Consensus        49 ~i~~~~~~~~~l~~ligG~LaDRilGrrr-----------~iliG~il~~lg~lll~~~~------------~-~~~~~~  104 (493)
T PRK15462         49 ELFSAYCSLVYVTPILGGFLADKVLGNRM-----------AVMLGALLMAIGHVVLGASE------------I-HPSFLY  104 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHccCcHH-----------HHHHHHHHHHHHHHHHHHhh------------c-chhHHH
Confidence            344444455556667788888887 5553           26778777777766554321            0 111223


Q ss_pred             HHHHHHHHHHHhhhhhhhheeecccCch--hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCccccccccchhhHHHH
Q 008231          454 PQYFLVGAGEAFVYVGQLEFFIREGPER--MKSMSTGLFLSAISMGMFVSSMLVSIVDKITNKHWLRSNLNKGKLNNFYW  531 (573)
Q Consensus       454 ~~~~l~g~~~~~~~~~~~~~~~~~~p~~--~rg~~~gi~~~~~~lg~~ig~~~~~~i~~~~~~~w~~~~~~~~~~~~~~~  531 (573)
                      ....+..+|.++..+...+++.|.+|++  .|.++.++.....++|+.++|.+.+++.+..  +|          ...|.
T Consensus       105 l~l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~--Gw----------~~~F~  172 (493)
T PRK15462        105 LSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEY--SW----------AMGFG  172 (493)
T ss_pred             HHHHHHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhh--Ch----------HHHHH
Confidence            3344455666666677778899999875  7999999999999999999999999987532  23          34565


Q ss_pred             HHHHHHHHHHHHH
Q 008231          532 LLAVLGLLNFMVF  544 (573)
Q Consensus       532 ~~a~~~~l~~~~~  544 (573)
                      +.++..+++.+.+
T Consensus       173 iaaigm~l~li~~  185 (493)
T PRK15462        173 LAAVGMIAGLVIF  185 (493)
T ss_pred             HHHHHHHHHHHHH
Confidence            5555444444443

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=98.03  E-value=1.9e-05  Score=82.75  Aligned_cols=169  Identities=9%  Similarity=-0.070  Sum_probs=133.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHH
Q 008231           38 ILGTELSERICAMGISMNLVTYLVGDLHLSSAKSATIVTNFMGTLNLLGLLGGFLADAKLGRYLTVAIFASVTALVVGLL  117 (573)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~  117 (573)
                      .++..+....+.-.+.+++--+++ +++-.+.-.|.....-..+-.+.-++.+++..++ |+-+++..++++.++=....
T Consensus       376 ff~~av~mG~g~~lv~tFLfWHle-d~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~ki-GHv~v~~lgLa~~~~Rf~~~  453 (618)
T KOG3762|consen  376 FFFVAVVMGAGVGLVFTFLFWHLE-DLGGIKTLFGVVSALCHAGEILFYFFSFKLIEKI-GHVNVMYLGLACNVGRFLYY  453 (618)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHh-hcCCcceeeeehhhhhccchHHHHHHHHHHHHHh-cccceeeehhhHHHHHHHHH
Confidence            344555555555556666654544 6676666677555555666677778889999998 99999999999999888888


Q ss_pred             HhhccCCCCCCCCCccccccccccccchhhHHHHHHHHHHHHHhcCccccccccccccCCCCCCCchHHHhHHHHHHHHH
Q 008231          118 TSATSIPSMRPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKAMIFFFNRFY  197 (573)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~  197 (573)
                      +...                          |.|+.+..-+++|+..+.++.++.++++...|++.      |..+.++..
T Consensus       454 S~L~--------------------------n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l------~at~Q~l~~  501 (618)
T KOG3762|consen  454 SYLQ--------------------------NPWMVLPIEILQGITHALIWAAIISYASHVAPPGL------RATAQGLLQ  501 (618)
T ss_pred             HHhc--------------------------CchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcc------hHHHHHHHH
Confidence            8763                          67888889999999999999999999999999999      899998855


Q ss_pred             H-HHHhhhHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHHHHh
Q 008231          198 F-AISIGSLFAVIVLVYVQDNVGRGWGYGISAGTMVVAAAILLI  240 (573)
Q Consensus       198 ~-~~~ig~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~  240 (573)
                      . -..+|-.+|.+++|.+.+.+|-+..|.+.++.+++.++....
T Consensus       502 g~f~GlG~g~GslIGG~~v~~fg~~ttf~~~giAcl~~l~~~~~  545 (618)
T KOG3762|consen  502 GIFHGLGKGLGSLIGGFVVERFGARTTFRIFGIACLVTLALFIS  545 (618)
T ss_pred             HHhcccCcchhhhhhhhhheeehhHHHHHHHHHHHHHHHHHHHH
Confidence            5 448899999999999999999888888777766665554333

>TIGR00788 fbt folate/biopterin transporter

Probab=98.03  E-value=1.4e-05  Score=86.19  Aligned_cols=136  Identities=7%  Similarity=-0.216  Sum_probs=107.0

Q ss_pred             hhhcCCCchhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCccccccccc
Q 008231           61 VGDLHLSSAKSATIVTNFMGTLNLLGLLGGFLADAKLGRYLTVAIFASVTALVVGLLTSATSIPSMRPPQCDDYRRKHHQ  140 (573)
Q Consensus        61 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (573)
                      .+.+|+++.+.|.+.+...++..++..+.+++.+|+ +.|+++.++.++.+++........+......            
T Consensus       280 ~~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~-~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~------------  346 (468)
T TIGR00788       280 TQCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTF-PYRLLFGVTTLLYTLSSLFDLILVKRWNLAF------------  346 (468)
T ss_pred             cccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhC-CHHHHHHHHHHHHHHHHhCceeeeecccccc------------
Confidence            457999999999999999999999999999999998 9999999999888887755432211010000            


Q ss_pred             cccchhhHHHHHHHHHHHHHhcCccccccccccccCCCCCCCchHHHhHHHHHHHHHHHHHhhhHHHHHHhhhhhcccc
Q 008231          141 CIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKAMIFFFNRFYFAISIGSLFAVIVLVYVQDNVG  219 (573)
Q Consensus       141 ~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~~~~~l~~~~g  219 (573)
                      +    ..+.+.++...++.+++.+........++.+..|++.      +++.+++++...++|..+++.+++++.+..|
T Consensus       347 g----i~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~p~~~------egt~~al~~s~~~lg~~v~~~~gg~l~~~~g  415 (468)
T TIGR00788       347 G----ISDEVFVLGDSIIAEVLAQLKFMPFLVLLARLCPSGC------ESSVFALLASILHLGSSVSGFLGVLLMETIG  415 (468)
T ss_pred             C----CCCeeeeeehhHHHHHHHHHHHccHHHHHHHhCCCCc------eehHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            0    0112234444567777778877888999999999998      9999999999999999999999999988777

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.01  E-value=3.4e-05  Score=82.80  Aligned_cols=165  Identities=16%  Similarity=0.082  Sum_probs=110.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhHHHHHhhh----ccchhHHHHHHHH
Q 008231           33 LAAGLILGTELSERICAMGISMNLVTYLVGDLHLSSAKSATIVTNFMGTLNLLGLLGGFLADA----KLGRYLTVAIFAS  108 (573)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr----~~Grr~~~~~~~~  108 (573)
                      +.+|..++..++.....|++..++|.|+.+..|+|..+++.+...+.+++.++.++.|+++||    . .+|......+.
T Consensus       273 p~vw~~~l~~~~~~lv~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~-~~~~~~~~~~~  351 (495)
T KOG2533|consen  273 PGVWPFSLCYFFLKLVNYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRLKTIF-ARRLLFIVFLC  351 (495)
T ss_pred             hhHHHHHHHHHHHhhccccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHHhhhH-HHHHHHHHHHH
Confidence            467889999999999999999999999998778999999999999999999999999999999    5 67777666665


Q ss_pred             HHHHHH-HHHHhhccCCCCCCCCCccccccccccccchhhHHHHHHHHHHHHHhcCccccccccccccCCCCCCCchHHH
Q 008231          109 VTALVV-GLLTSATSIPSMRPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEK  187 (573)
Q Consensus       109 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~~~~~  187 (573)
                      ++.+.. ..+.....                          ......+.+....+.....+......++....+. +   
T Consensus       352 ~~~~~g~~~l~~~~~--------------------------~~~~~~~~~~~~~~~~~~~~~~~~w~s~~~~g~~-k---  401 (495)
T KOG2533|consen  352 LYAIIGAISLLAAAV--------------------------LPGAYGAFLIGPYGLIATAIIALSWTSANLAGNT-K---  401 (495)
T ss_pred             HHHHHHHHHHHhhcc--------------------------chHHhHHHHhcchhhHHHHHHHHhhccccccchH-H---
Confidence            554433 33333211                          1122222223333344444555666666665443 1   


Q ss_pred             hHHHHHHHHHH-HHHhhhHHHHHHhhhhhcccchhHHHHHHHH
Q 008231          188 AMIFFFNRFYF-AISIGSLFAVIVLVYVQDNVGRGWGYGISAG  229 (573)
Q Consensus       188 ~r~~~~~~~~~-~~~ig~~~~~~~~~~l~~~~g~~~~f~~~~~  229 (573)
                       |-...+.+.. ....|.+.+++.-+.....++|.+.|.....
T Consensus       402 -~~~~~~~~i~~~~s~~~~~~~~~~~~~ap~y~~~~~f~~~~~  443 (495)
T KOG2533|consen  402 -ALTTVSAIIDGTGSAGAISGQLFRSLDAPRYGWGAVFYMLVA  443 (495)
T ss_pred             -hHHHHhhhhcchhHHHHhhhhhcccccCcchhhhhHHHHHHH
Confidence             4444444333 3444555555555666666788888854433

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=97.99  E-value=7.1e-08  Score=103.43  Aligned_cols=186  Identities=16%  Similarity=0.020  Sum_probs=111.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHH
Q 008231           36 GLILGTELSERICAMGISMNLVTYLVGDLHLSSAKSATIVTNFMGTLNLLGLLGGFLADAKLGRYLTVAIFASVTALVVG  115 (573)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~  115 (573)
                      ...+.......+..+....+..+++.+..+.+..  -.......+...++.+++.++.||+ |||++++.+..+.+++..
T Consensus       255 ~~~~~l~~~~~~~g~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-GRr~~~i~~~~~~~~~~~  331 (451)
T PF00083_consen  255 LIALLLQFFQQFSGINFIFYYSPSIFENAGISNS--FLATLILGLVNFLGTLLAIFLIDRF-GRRKLLIIGLLLMAICSL  331 (451)
T ss_pred             cccccccccccccccccccccccccccccccccc--ccccccccccccccccccccccccc-cccccccccccccccccc
Confidence            3333333333333333333444555566677766  2222334455666777778999998 999999999888777776


Q ss_pred             HHH-hhccCCCCCCCCCccccccccccccchhhHHHHHHHHHHHHHhcCccccccccccccCCCCCCCchHHHhHHHHHH
Q 008231          116 LLT-SATSIPSMRPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKAMIFFFN  194 (573)
Q Consensus       116 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  194 (573)
                      .++ .....+..                 +...+...+............+..+....+.+|.+|.+.      |+++.+
T Consensus       332 ~~~~~~~~~~~~-----------------~~~~~~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~------R~~~~~  388 (451)
T PF00083_consen  332 ILGIIFFLGVSS-----------------SSWWSILSIVFLALFFAFFSLGWGPLPWIYTAELFPTKV------RSTGIG  388 (451)
T ss_pred             cccccccccccc-----------------ccccccccceeeeeccccccccccccccccccccccccc------cccccc
Confidence            664 11000000                 000011111111111122222444666688899999999      999999


Q ss_pred             HHHHHHHhhhHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHHHHhcCccccc
Q 008231          195 RFYFAISIGSLFAVIVLVYVQDNVGRGWGYGISAGTMVVAAAILLIGTPWYRF  247 (573)
Q Consensus       195 ~~~~~~~ig~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~  247 (573)
                      +.+....+++++++.+...+.+..+-...+.+.+..+++..+..++..||.+.
T Consensus       389 ~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~i~~i~~~~~lpET~g  441 (451)
T PF00083_consen  389 LSYAVGRIGGFIIPFLFPYLFNNLGGWGVFLIFAGVCLIAIIFVYFFLPETKG  441 (451)
T ss_pred             cccccccccccccccccccccccccccccchhhHHHHHHHHhheeEEEeeCCC
Confidence            99888899999999888888877763445555555555556555666665543

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>TIGR00805 oat sodium-independent organic anion transporter

Probab=97.95  E-value=9.4e-05  Score=82.66  Aligned_cols=129  Identities=15%  Similarity=0.146  Sum_probs=95.9

Q ss_pred             cccccchhhHHHHHHHHHhhhhhhhhhhcccccccCCCchHHHHHHHHHHHHHHHHHHHHHHHHH----Hh---------
Q 008231          372 PSGSLSAFLFITILLFTSLNEKVFVPLARKITHSIQGMTSLQRVGTGLIFSVIAMIVSAVIEQQR----RE---------  438 (573)
Q Consensus       372 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~i~~i~~~~~~~~~----~~---------  438 (573)
                      ..+++.+...++.++...+.+++.+|..||+.           +..|.++++++.++.++.....    ..         
T Consensus        69 ~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~-----------i~~g~ll~~lg~ll~alphf~~~~y~~~~~~~~~~~~  137 (633)
T TIGR00805        69 SSGLINGSYEIGNLLLIIFVSYFGTKLHRPIV-----------IGIGCAIMGLGSFLLSLPHFLSGRYSYSTTVSSTGNL  137 (633)
T ss_pred             cceeeeehhhHHHHHHHHHHHHhhcccCcceE-----------EEecHHHHHHHHHHHhChHHhcCCccccccccccccc
Confidence            45677778888888888888888766555433           6778888888887776642110    00         


Q ss_pred             ----hccc-----------------CC-c--ccchhHHHHHHHHHHHHHHhhhhhhhheeecccCchhHHHHHHHHHHHH
Q 008231          439 ----TSVQ-----------------KH-I--QISAFWLVPQYFLVGAGEAFVYVGQLEFFIREGPERMKSMSTGLFLSAI  494 (573)
Q Consensus       439 ----~~~~-----------------~~-~--~~~~~~lv~~~~l~g~~~~~~~~~~~~~~~~~~p~~~rg~~~gi~~~~~  494 (573)
                          ...+                 .. .  ...+..+++.-++.|+|.+...+...+++.|.+|++.|+.+.|+++...
T Consensus       138 ~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i~~~~~  217 (633)
T TIGR00805       138 SSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGILESIA  217 (633)
T ss_pred             cccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccccHHHHHHHHHHH
Confidence                0000                 00 0  1134556678899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhh
Q 008231          495 SMGMFVSSMLVSIVDKI  511 (573)
Q Consensus       495 ~lg~~ig~~~~~~i~~~  511 (573)
                      .+|..+|+.+++++.+.
T Consensus       218 ~iG~~lG~llgg~l~~~  234 (633)
T TIGR00805       218 VFGPAFGYLLGSFCLQI  234 (633)
T ss_pred             HhhhHHHHHHHHHHHhc
Confidence            99999999999988753

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]

Probab=97.94  E-value=0.0023  Score=64.57  Aligned_cols=158  Identities=14%  Similarity=0.022  Sum_probs=93.3

Q ss_pred             CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhHHHHHhh-----hccchhHHH
Q 008231           29 TGGWLAAGLILGTELSERICAMGISMNLVTYLVGDLHLSSAKSATIVTNFMGTLNLLGLLGGFLAD-----AKLGRYLTV  103 (573)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laD-----r~~Grr~~~  103 (573)
                      +...+++..+++.-..+.+=+ +....+|..++ .-|.|-++.+...-+  .--+..-+++.++.|     |+ ||||..
T Consensus        27 ~~d~~~illLl~LYllQGiP~-GL~~~iP~lL~-ak~vSyt~~a~fS~a--y~P~sLKllWaPiVDs~y~k~~-GrrksW  101 (510)
T KOG3574|consen   27 KGDRSSILLLLFLYLLQGIPL-GLIGAIPLLLQ-AKGVSYTSQAIFSFA--YWPFSLKLLWAPIVDSVYSKRF-GRRKSW  101 (510)
T ss_pred             hhhhhhHHHHHHHHHHcCCch-hHhhhhHHHhc-CCCcchhhhhhhhhh--hhHHHHHHHHHhhhHHHHHHhh-ccccce
Confidence            444557777777777776554 55565554444 668888776543222  223456788999999     88 999986


Q ss_pred             HHHHHHHHHHHHHHHhhccCCCCCCCCCccccccccccccchhhHHHHHHHHHHHHHhcCccccccccccccCCCCCCCc
Q 008231          104 AIFASVTALVVGLLTSATSIPSMRPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDP  183 (573)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~  183 (573)
                      ++-. -+.+|.++..++...+.            .+.+|...+ +...+....++.-+..+.-..++....-.+..+++ 
T Consensus       102 vvp~-q~llG~~mllLs~~v~~------------~~g~ng~~p-~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~e~-  166 (510)
T KOG3574|consen  102 VVPC-QYLLGLFMLLLSYLVDR------------GLGGNGGLP-NVVALTLLFLLLNFLAATQDIAVDGWALTMLSREN-  166 (510)
T ss_pred             eeeh-HHHHHHHHHHHhhCCCc------------ccccCCCCc-chHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCHhh-
Confidence            6432 12334444444321111            011111121 22233333344445556666666777777777777 


Q ss_pred             hHHHhHHHHHHHHHHHHHhhhHHHHHHh
Q 008231          184 KEEKAMIFFFNRFYFAISIGSLFAVIVL  211 (573)
Q Consensus       184 ~~~~~r~~~~~~~~~~~~ig~~~~~~~~  211 (573)
                           .+-+......+.+.|.+++..+.
T Consensus       167 -----lgyaST~q~Vg~~~GyfL~~~if  189 (510)
T KOG3574|consen  167 -----LGYASTCQSVGQTAGYFLGNVVF  189 (510)
T ss_pred             -----cCchhHHHHHHHhhhHHhhccee
Confidence                 88888888889999998886554

>PTZ00207 hypothetical protein; Provisional

Probab=97.84  E-value=0.00049  Score=75.48  Aligned_cols=129  Identities=11%  Similarity=0.080  Sum_probs=89.0

Q ss_pred             HHhhhhhhhhhhcccccccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCcccchhHHHHHHHHHHHHHHhhh
Q 008231          388 TSLNEKVFVPLARKITHSIQGMTSLQRVGTGLIFSVIAMIVSAVIEQQRRETSVQKHIQISAFWLVPQYFLVGAGEAFVY  467 (573)
Q Consensus       388 ~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~lv~~~~l~g~~~~~~~  467 (573)
                      ....+++.|++++|.           .+.+|.++..++.++.++...        .....+.+.+.+..++.|+|.+...
T Consensus        78 ~lp~G~L~Dr~G~R~-----------vllig~ll~~iG~ll~ala~~--------~~i~~s~~~l~l~r~l~G~G~~~~~  138 (591)
T PTZ00207         78 LLPYSFIYDYLGPRP-----------IFVLSMTVFCLGTLLFALTFQ--------EVIEGSVVRLSVYNGLMTLGCMLFD  138 (591)
T ss_pred             HHHHHHHHHHhCcHH-----------HHHHHHHHHHHHHHHHHHHhc--------ccccCcHHHHHHHHHHHHHHHHHHH
Confidence            334577777666553           378888888889888776421        1112356677778889999998888


Q ss_pred             hhhhheeecccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCccccccccchhhHHHHHHHHHHHHHHHHHHHH
Q 008231          468 VGQLEFFIREGPERMKSMSTGLFLSAISMGMFVSSMLVSIVDKITNKHWLRSNLNKGKLNNFYWLLAVLGLLNFMVFLFF  547 (573)
Q Consensus       468 ~~~~~~~~~~~p~~~rg~~~gi~~~~~~lg~~ig~~~~~~i~~~~~~~w~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~  547 (573)
                      +.....+.+.+| +.||.+.|+......+|+.+.+.+...+...   +          ...++++++++.++..++.+.+
T Consensus       139 ~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~~---~----------~~~~fl~l~vl~~vv~ll~~~~  204 (591)
T PTZ00207        139 LGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFSD---N----------TSAYFFFLMSFALVVGILAIVF  204 (591)
T ss_pred             HHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---h----------HHHHHHHHHHHHHHHHHHHHhh
Confidence            888888888887 6699999999999999998655544443321   1          2345666677766666655555


Q ss_pred             Hh
Q 008231          548 AM  549 (573)
Q Consensus       548 ~~  549 (573)
                      .+
T Consensus       205 vr  206 (591)
T PTZ00207        205 MR  206 (591)
T ss_pred             ee
Confidence            44

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=97.83  E-value=4.4e-05  Score=78.73  Aligned_cols=179  Identities=12%  Similarity=0.028  Sum_probs=121.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhhH----HHHHH----HHHHH-HHHhHHHHHhhhccchhHHH
Q 008231           33 LAAGLILGTELSERICAMGISMNLVTYLVGDLHLSSAKSAT----IVTNF----MGTLN-LLGLLGGFLADAKLGRYLTV  103 (573)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~----~~~~~----~~~~~-~~~~~~G~laDr~~Grr~~~  103 (573)
                      +.+.-.+..+|+-.+++|+...+...-+ +..|+.+.+...    -++..    ...+. .+..+..++.|+. |||+..
T Consensus       304 ~~Llgt~~~WFllDiafy~~nL~~s~I~-~~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~i-GRk~iq  381 (538)
T KOG0252|consen  304 KHLLGTAGTWFLLDIAFYGQNLFQSVIF-SAIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDII-GRKYIQ  381 (538)
T ss_pred             HHHHHHHHHHHhhhhhhhccccHHHHHH-HhhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehh-hhHHHH
Confidence            4455667777888888888765554443 355665554433    11211    11222 2455667789998 999999


Q ss_pred             HHHHHHHHHHHHHHHhhccCCCCCCCCCccccccccccccchhhHHHHHHHHH-HHHHhcCccccccccccccCCCCCCC
Q 008231          104 AIFASVTALVVGLLTSATSIPSMRPPQCDDYRRKHHQCIEANGKQLAMLYAAL-YTIALGGGGIKSNVSGFGSDQFDTSD  182 (573)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~g~g~~~~~~~~~~~~~~~~~~~~  182 (573)
                      +-+++++++..+.++..-+...                      +...+++.- +.+-++.-+...+...+.+|.||.+.
T Consensus       382 ~~GF~~~~i~~~~~~~~y~~~~----------------------~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FParv  439 (538)
T KOG0252|consen  382 LMGFFIMTIFFFVIAGPYNQLE----------------------NTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPARV  439 (538)
T ss_pred             HhhHHHHHHHHHHHcCCccccc----------------------ccCceeehHHHHHHHHhcCCCceeEEeehhhchHHH
Confidence            9999999988877776432110                      111222211 22333444455566677899999998


Q ss_pred             chHHHhHHHHHHHHHHHHHhhhHHHHHHhhhhhc-----ccchhHHHHHHHHHHHHHHHHHHhc
Q 008231          183 PKEEKAMIFFFNRFYFAISIGSLFAVIVLVYVQD-----NVGRGWGYGISAGTMVVAAAILLIG  241 (573)
Q Consensus       183 ~~~~~~r~~~~~~~~~~~~ig~~~~~~~~~~l~~-----~~g~~~~f~~~~~~~~~~~~~~~~~  241 (573)
                            |+...|+.....-+|+++|.....++.+     ..|.+++|++.+.+++++.+..++.
T Consensus       440 ------R~t~hGIsAA~GK~GAivg~~~F~~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T~l~  497 (538)
T KOG0252|consen  440 ------RSTCHGISAASGKAGAIVGAFGFLYLTDHNYPPNIGVRNVFIILAGCMLLGILFTLLI  497 (538)
T ss_pred             ------hhhhhhHHHHhccchHHHHHHHhhHhhhccCCccccchHHHHHHHHHHHHhHheeEEe
Confidence                  9999999999999999999999999998     7789999999988888777654443

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=97.82  E-value=0.047  Score=58.43  Aligned_cols=165  Identities=12%  Similarity=0.045  Sum_probs=100.6

Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC-----chhhhHHHHHHHHHHHHH-HhHHHHHhhhccchhHHHH
Q 008231           31 GWLAAGLILGTELSERICAMGISMNLVTYLVGDLHLS-----SAKSATIVTNFMGTLNLL-GLLGGFLADAKLGRYLTVA  104 (573)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s-----~~~~~~~~~~~~~~~~~~-~~~~G~laDr~~Grr~~~~  104 (573)
                      .++.++.+...-|+-.++|+.+.+     +.+.+..+     .....++-+...+...+. .++-+++++|+ +|++.+.
T Consensus         5 E~~k~~~~~l~fF~il~~Y~iLR~-----lKD~lvv~~~~~gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~-~~~~lf~   78 (472)
T TIGR00769         5 ELKKFLPLFLMFFCILFNYTILRD-----TKDTLVVTAKGSGAEIIPFLKTWVVVPMAVIFMLIYTKLSNIL-SKEALFY   78 (472)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHh-----hhhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcC-CHHHhHH
Confidence            345566666666676677766654     56666653     346667766665655555 78889999998 9999988


Q ss_pred             HHHHHHHHHHHHHHhhccCCC--CC--CCCCccccccccccccch---------hhHHHHHHHHHHHHHhcCccccc-cc
Q 008231          105 IFASVTALVVGLLTSATSIPS--MR--PPQCDDYRRKHHQCIEAN---------GKQLAMLYAALYTIALGGGGIKS-NV  170 (573)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~--~~--~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~l~g~g~~~~~~-~~  170 (573)
                      +....+.....++++.- .|.  ..  ...||+    ........         ......+++   ...+-.....+ ..
T Consensus        79 ~~~~~F~~~f~lF~~vl-~p~~~~~~p~~~~~~----~~~~~~~~~~~~i~~~~~W~~~~FYv---~~elw~~~vvS~lF  150 (472)
T TIGR00769        79 TVISPFLGFFALFAFVI-YPLSDLLHPTALADK----LLSLLPPGFMGFIAILRIWSFALFYV---MAELWGSVVLSLLF  150 (472)
T ss_pred             HHHHHHHHHHHHHHHHH-hcchhhcCCcHHHHH----HHhhcchhhHHHHHHHhhhhHHHHHH---HHHHHHHHHHHHHH
Confidence            87777777666666541 110  00  000000    00000000         001111111   12222233333 66


Q ss_pred             cccccCCCCCCCchHHHhHHHHHHHHHHHHHhhhHHHHHHhhhhh
Q 008231          171 SGFGSDQFDTSDPKEEKAMIFFFNRFYFAISIGSLFAVIVLVYVQ  215 (573)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~~~~~l~  215 (573)
                      +++..|.++.++      -.|.++++..+.|+|..+++.+..++.
T Consensus       151 W~fandi~t~~q------akRfy~l~~~ganlg~i~sg~~~~~~~  189 (472)
T TIGR00769       151 WGFANQITTIDE------AKRFYALFGLGANVALIFSGRTIKYFS  189 (472)
T ss_pred             HHHHHhcCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            788999999887      889999999999999999999988876

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=97.78  E-value=0.00056  Score=74.68  Aligned_cols=138  Identities=11%  Similarity=0.211  Sum_probs=95.3

Q ss_pred             ccccchhhHHHHHHHHHhhhhhhhhhhcccccccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCcccchhHH
Q 008231          373 SGSLSAFLFITILLFTSLNEKVFVPLARKITHSIQGMTSLQRVGTGLIFSVIAMIVSAVIEQQRRETSVQKHIQISAFWL  452 (573)
Q Consensus       373 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~l  452 (573)
                      ..++.....+......|+.+++.|.++||..           ++.|.++..+|.++.+...              +.-.+
T Consensus        80 ~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~-----------~i~g~~l~vvG~Iv~atA~--------------~~~~~  134 (599)
T PF06609_consen   80 WSWFSTAWTLASAVSFPFVGRLSDLFGRRYF-----------FIIGSLLGVVGSIVCATAQ--------------NMNTF  134 (599)
T ss_pred             chHHHHHHHHHHHHHHHhhHHHHHHhcchHH-----------HHHHHHHHHhHHHHhhcCC--------------cHHHH
Confidence            4567777778888888999999999988864           6788888888888776542              44556


Q ss_pred             HHHHHHHHHHHHhhhhhhhheeecccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCccccccccchhhHHHHH
Q 008231          453 VPQYFLVGAGEAFVYVGQLEFFIREGPERMKSMSTGLFLSAISMGMFVSSMLVSIVDKITNKHWLRSNLNKGKLNNFYWL  532 (573)
Q Consensus       453 v~~~~l~g~~~~~~~~~~~~~~~~~~p~~~rg~~~gi~~~~~~lg~~ig~~~~~~i~~~~~~~w~~~~~~~~~~~~~~~~  532 (573)
                      +.+.++.|+|.+.... ....+.|..|.+.|+.+.++.....-+...+++.+...+...  .+|          .+.|++
T Consensus       135 iag~~l~GvgaG~~~~-~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~--~~W----------Rw~~~~  201 (599)
T PF06609_consen  135 IAGMVLYGVGAGVQEL-AALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAH--SGW----------RWIFYI  201 (599)
T ss_pred             HHHHHHHHHhhHHHHH-HHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccC--CCc----------chHHHH
Confidence            7788888888666553 345589999999999888877665555555666665554432  244          234555


Q ss_pred             HHHHHHHHHHHHHHHH
Q 008231          533 LAVLGLLNFMVFLFFA  548 (573)
Q Consensus       533 ~a~~~~l~~~~~~~~~  548 (573)
                      .++...++++...+++
T Consensus       202 ~~i~~~i~~vl~~~fY  217 (599)
T PF06609_consen  202 FIIWSGIALVLIFFFY  217 (599)
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            5556555555544444

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=97.75  E-value=0.00049  Score=75.22  Aligned_cols=195  Identities=11%  Similarity=-0.020  Sum_probs=106.2

Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHH
Q 008231           31 GWLAAGLILGTELSERICAMGISMNLVTYLVGDLHLSSAKSATIVTNFMGTLNLLGLLGGFLADAKLGRYLTVAIFASVT  110 (573)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~  110 (573)
                      .++.....+....+..++.+....+....+-+..|.+... .+...+..+...++..++.++.||+ |||+.++.+...+
T Consensus       292 ~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~~g~~~~~-~~~~~~~~~v~~~~t~~~~~lvd~~-gRr~lll~s~~~m  369 (513)
T KOG0254|consen  292 VRKRLIIGLLLQLFQQLTGINYVFYYSTTIFKSAGLKSDT-FLASIILGVVNFLGTLVATYLVDRF-GRRKLLLFGAAGM  369 (513)
T ss_pred             hHHHHHHHHHHHHHHHHhCCceEEeehHHHHHhcCCCCch-HHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHhHHHH
Confidence            4444444444445544443222222233334455666443 4445556667777788889999998 9999999999999


Q ss_pred             HHHHHHHHhhccCCCCCCCCCccccccccccccchhhHHHHHHHHHHHHHhcCccccccccccccCCCCCCCchHHHhHH
Q 008231          111 ALVVGLLTSATSIPSMRPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKAMI  190 (573)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~  190 (573)
                      .++.++++.........            ...... .....+....+.......+..|..+.+.+|.+|.+.      |+
T Consensus       370 ~~~~~~~~~~~~~~~~~------------~~~~~~-~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~------r~  430 (513)
T KOG0254|consen  370 SICLVILAVVGVFALYY------------PNSSKG-AGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRL------RS  430 (513)
T ss_pred             HHHHHHHHHHHHHhccC------------CCcccc-hhHHHHHHHHHHHHHHhcccccchhhhhhccCcHhH------Hh
Confidence            99988887653211000            000000 011122222222333344444666678899999998      88


Q ss_pred             HHHHHHHHHHHhhhHHHHHHhhhhhcccchhHHHHHHHHHHHHHHH-HHHhcCcccc
Q 008231          191 FFFNRFYFAISIGSLFAVIVLVYVQDNVGRGWGYGISAGTMVVAAA-ILLIGTPWYR  246 (573)
Q Consensus       191 ~~~~~~~~~~~ig~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~-~~~~~~~~~~  246 (573)
                      ++.++......+...+-......+.+..++...|......+.+... ..++..||.+
T Consensus       431 ~~~s~~~~~n~~~~~~v~~~~~~~~~~~~~~~~f~~f~~~~~~~~~~fv~~~~pETk  487 (513)
T KOG0254|consen  431 KGASLAVAVNWLWNFLISFFFPFITEALGIGGTFGYFGGICLLSLIIFVFFFVPETK  487 (513)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHheEEcccCC
Confidence            8888855544444333322323333333334555555555545544 4555556543

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=97.75  E-value=8.6e-05  Score=74.88  Aligned_cols=113  Identities=17%  Similarity=0.135  Sum_probs=91.5

Q ss_pred             cccccchhhHHHHHHHHHhhhhhhhhhhcccccccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCcccchhH
Q 008231          372 PSGSLSAFLFITILLFTSLNEKVFVPLARKITHSIQGMTSLQRVGTGLIFSVIAMIVSAVIEQQRRETSVQKHIQISAFW  451 (573)
Q Consensus       372 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~  451 (573)
                      -.+.+.+...+...+..+..+.+.|+.+||..           +..|.+..++.+.+.+...              ++..
T Consensus        69 yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpv-----------ll~c~~~va~s~ll~~~S~--------------~F~a  123 (451)
T KOG2615|consen   69 YAGFLGSSFSILQFISSPLWGCLSDRYGRKPV-----------LLACLIGVALSYLLWALSR--------------NFAA  123 (451)
T ss_pred             hhhhHhhHHHHHHHHhhhhhhhhhhhhCchHH-----------HHHHHHHHHHHHHHHHHHH--------------HHHH
Confidence            45666777788888999999999998888853           6778888888777766642              4545


Q ss_pred             HHHHHHHHHHHHHhhhhhhhheeecccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008231          452 LVPQYFLVGAGEAFVYVGQLEFFIREGPERMKSMSTGLFLSAISMGMFVSSMLVSIVDK  510 (573)
Q Consensus       452 lv~~~~l~g~~~~~~~~~~~~~~~~~~p~~~rg~~~gi~~~~~~lg~~ig~~~~~~i~~  510 (573)
                      ++..-++.|+..+..++ .-++++|+++++.|+.+++......++|-++||.+++++..
T Consensus       124 fv~aR~l~Gi~kgnl~v-~rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~  181 (451)
T KOG2615|consen  124 FVLARFLGGIFKGNLSV-IRAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQ  181 (451)
T ss_pred             HHHHHHhhhhccCchHH-HHHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHh
Confidence            56667788887766544 46899999999999999999999999999999999999875

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=97.60  E-value=0.0008  Score=71.22  Aligned_cols=161  Identities=12%  Similarity=0.130  Sum_probs=99.5

Q ss_pred             ccccchhhHHHHHHHHHhhhhhhhhhhcccccccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCcccchhHH
Q 008231          373 SGSLSAFLFITILLFTSLNEKVFVPLARKITHSIQGMTSLQRVGTGLIFSVIAMIVSAVIEQQRRETSVQKHIQISAFWL  452 (573)
Q Consensus       373 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~l  452 (573)
                      .+++.+...++.++..+.+++...+..+          ..+.++.|.+.+.++.+++...+..         .+...+++
T Consensus        73 fG~viaa~slg~~i~~liF~~Ws~k~~~----------~k~Pli~s~ii~~~g~llY~~l~~~---------~~~~~y~m  133 (488)
T KOG2325|consen   73 FGLVIAASSLGHAIFSLIFGIWSNKTGS----------VKKPLIVSFLIAIIGNLLYLALAYV---------PNGVKYLM  133 (488)
T ss_pred             hhHHHHHHHHHHHhcchhhcccccccCC----------cccCHHHHHHHHHHHHHHHHHHHhc---------ccchHHHH
Confidence            4556667788888888888877432211          1233889999999998888555431         12256778


Q ss_pred             HHHHHHHHHHHHhhhhhhhheeecccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc--CccccccccchhhHHH
Q 008231          453 VPQYFLVGAGEAFVYVGQLEFFIREGPERMKSMSTGLFLSAISMGMFVSSMLVSIVDKITNK--HWLRSNLNKGKLNNFY  530 (573)
Q Consensus       453 v~~~~l~g~~~~~~~~~~~~~~~~~~p~~~rg~~~gi~~~~~~lg~~ig~~~~~~i~~~~~~--~w~~~~~~~~~~~~~~  530 (573)
                      ..+.++.|+|.+..... =+|+++..-.+.|-++++..+....+|.++||.+...+.-....  .|.++ ..-+.+...-
T Consensus       134 L~~R~l~Gvg~~n~a~l-R~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G~~i~~~-~~~n~YTap~  211 (488)
T KOG2325|consen  134 LVARILTGVGVGNFAVL-RAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFTPLGEKGFMILPG-LIFNMYTAPA  211 (488)
T ss_pred             HHHHHHcCcCcccHHHH-HHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHhhhcCCceEEcCc-ceEEecchHH
Confidence            88899999986554433 34666654445566666666655566666666655444332222  23331 2223344556


Q ss_pred             HHHHHHHHHHHHHHHHHHhhcchh
Q 008231          531 WLLAVLGLLNFMVFLFFAMKHQYN  554 (573)
Q Consensus       531 ~~~a~~~~l~~~~~~~~~~~~~~~  554 (573)
                      |+.+++.++..++..++++|..+.
T Consensus       212 w~m~i~~i~~~v~i~~~f~E~~~~  235 (488)
T KOG2325|consen  212 WLMAILWIIYIVIILFFFKEVYRG  235 (488)
T ss_pred             HHHHHHHHHHHHHHHhheeecccC
Confidence            778888888888887777765443

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=97.44  E-value=0.0043  Score=55.85  Aligned_cols=108  Identities=10%  Similarity=0.115  Sum_probs=84.1

Q ss_pred             HHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCccccccccccccchhhHHHHH
Q 008231           73 TIVTNFMGTLNLLGLLGGFLADAKLGRYLTVAIFASVTALVVGLLTSATSIPSMRPPQCDDYRRKHHQCIEANGKQLAML  152 (573)
Q Consensus        73 ~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (573)
                      .-.++......+.+++...+.+++ |.|++++++.+.+.+-.+....                           ++.+.+
T Consensus        41 ~slai~Y~~~~~s~l~~P~iv~~l-g~K~sm~lg~~~y~~y~~~~~~---------------------------~~~~~l   92 (156)
T PF05978_consen   41 YSLAILYGSFAISCLFAPSIVNKL-GPKWSMILGSLGYAIYIASFFY---------------------------PNSYTL   92 (156)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHH-hhHHHHHHHHHHHHHHHHHHHh---------------------------hhHHHH
Confidence            335556667778888888899997 9999999999888765444332                           356788


Q ss_pred             HHHHHHHHhcCccccccccccccCCCCCCCchHHHhHHHHHHHHHHHHHhhhHHHHHHhhhh
Q 008231          153 YAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKAMIFFFNRFYFAISIGSLFAVIVLVYV  214 (573)
Q Consensus       153 ~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~~~~~l  214 (573)
                      +.+-++.|++.+..+.....++.+..++++      |++..+++....+.+.++|.++.-.+
T Consensus        93 ~~~s~l~G~~~a~lW~aqg~ylt~~s~~~~------~~~~~~ifw~i~~~s~i~G~~~~~~~  148 (156)
T PF05978_consen   93 YPASALLGFGAALLWTAQGTYLTSYSTEET------IGRNTGIFWAIFQSSLIFGNLFLFFI  148 (156)
T ss_pred             HHHHHHHhhhhHHhhHhhhHHHHHcCCHHH------HhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            889999999999999999999999887766      88888887777777777776555433

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=97.35  E-value=0.0011  Score=72.56  Aligned_cols=133  Identities=13%  Similarity=0.199  Sum_probs=99.3

Q ss_pred             ccchhhHHHHHHHHHhhhhhhhhhhcccccccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCcccchhHHHH
Q 008231          375 SLSAFLFITILLFTSLNEKVFVPLARKITHSIQGMTSLQRVGTGLIFSVIAMIVSAVIEQQRRETSVQKHIQISAFWLVP  454 (573)
Q Consensus       375 ~~~~~~~~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~lv~  454 (573)
                      ..+++..++.+++..+.+.+.|+++||..           +..++++..++-+..++.              .+++.+.+
T Consensus       122 ~~~s~~~~G~~vG~~i~g~lsD~~GRk~~-----------~~~~~~~~~i~~~~~a~a--------------~~~~~~~~  176 (521)
T KOG0255|consen  122 LGQSLFFLGVLVGSLIFGPLSDRFGRKPV-----------LLVSLLLFIIFGILTAFA--------------PNYWMFLI  176 (521)
T ss_pred             HHHHHHHHHHHHHHhhheehHhhcccHHH-----------HHHHHHHHHHHHHHHHHh--------------CcHHHHHH
Confidence            34556667777777777778777676643           666777766666655554              36778888


Q ss_pred             HHHHHHHHHHhhhhhhhheeecccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCccccccccchhhHHHHHHH
Q 008231          455 QYFLVGAGEAFVYVGQLEFFIREGPERMKSMSTGLFLSAISMGMFVSSMLVSIVDKITNKHWLRSNLNKGKLNNFYWLLA  534 (573)
Q Consensus       455 ~~~l~g~~~~~~~~~~~~~~~~~~p~~~rg~~~gi~~~~~~lg~~ig~~~~~~i~~~~~~~w~~~~~~~~~~~~~~~~~a  534 (573)
                      .-++.|++........+.++.|..+++.|+.+..+ ....+.++.+++...+++..    +|          ...+++..
T Consensus       177 ~Rfl~G~~~~~~~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~----~W----------r~~~~~~~  241 (521)
T KOG0255|consen  177 FRFLSGFFGSGPLTVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR----DW----------RWLFWIIS  241 (521)
T ss_pred             HHHHHHhhccchhHHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh----hH----------HHHHHHHH
Confidence            99999999999999999999999999999999999 88888889999999888874    34          24556656


Q ss_pred             HHHHHHHHHHHHHH
Q 008231          535 VLGLLNFMVFLFFA  548 (573)
Q Consensus       535 ~~~~l~~~~~~~~~  548 (573)
                      +...+..+. +++.
T Consensus       242 ~~~~~~~~~-~~l~  254 (521)
T KOG0255|consen  242 IPSGLFLLL-WFLP  254 (521)
T ss_pred             HHHHHHHHH-HHcc
Confidence            555555444 3443

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=97.19  E-value=0.0011  Score=70.63  Aligned_cols=153  Identities=15%  Similarity=0.047  Sum_probs=117.4

Q ss_pred             CCchHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhHHH-HHhhhccchhHHHHHHH
Q 008231           30 GGWLAAGLILGTELSERICAMGISM-NLVTYLVGDLHLSSAKSATIVTNFMGTLNLLGLLGG-FLADAKLGRYLTVAIFA  107 (573)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G-~laDr~~Grr~~~~~~~  107 (573)
                      +..|..+.+++..++...--.+-.. .++.|+...++++..+.+...+..+....++.++.. .+.-.+ |-|+++..|+
T Consensus       237 ~~~r~~l~l~l~~~~~~~~~~~~~~~~~~~yl~~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l-~~~~~i~lGl  315 (463)
T KOG2816|consen  237 GPDRLLLLLLLVAFLSSLPEAGGASDVLLLYLKAKFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSIL-GEKRLISLGL  315 (463)
T ss_pred             CCCccchHHHHHHHHHHHHHhcCceeEEEEEEeeecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhhHhhHHH
Confidence            3444455555544443333222112 446788889999999999999999999999999988 555555 9999999999


Q ss_pred             HHHHHHHHHHHhhccCCCCCCCCCccccccccccccchhhHHHHHHHHHHHHHhcCccccccccccccCCCCCCCchHHH
Q 008231          108 SVTALVVGLLTSATSIPSMRPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEK  187 (573)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~~~~~  187 (573)
                      ..-.+.....++++                          +.++.+....+.+ ......|...++++.+.++++     
T Consensus       316 ~~~~~~~~~~af~~--------------------------~~w~~~~~~v~~~-~~~~~~pa~~s~~s~~v~~~e-----  363 (463)
T KOG2816|consen  316 LSEFLQLLLFAFAT--------------------------ETWMMFAAGVVVA-LAGIVFPAIRAFASILVSPEE-----  363 (463)
T ss_pred             HHHHHHHHHHHHhc--------------------------cchhhhHHHHHHH-hhcchhHHHHhHHHhhccccc-----
Confidence            99999999999985                          4556676666544 445566888999999999999     


Q ss_pred             hHHHHHHHHHHHHHhhhHHHHHHhhhhhc
Q 008231          188 AMIFFFNRFYFAISIGSLFAVIVLVYVQD  216 (573)
Q Consensus       188 ~r~~~~~~~~~~~~ig~~~~~~~~~~l~~  216 (573)
                       +|+++++......+.++++|.+-+.+..
T Consensus       364 -~g~v~~~is~i~~l~~~~~~~~~~~i~~  391 (463)
T KOG2816|consen  364 -QGKVFGIISGIEGLSGVVSPALYGNIFA  391 (463)
T ss_pred             -ccchhhHHHHHHHHhhhhhHHHHHHHHH
Confidence             9999999999999999999998877653

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=97.19  E-value=0.0027  Score=65.74  Aligned_cols=185  Identities=12%  Similarity=-0.024  Sum_probs=111.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHH
Q 008231           34 AAGLILGTELSERICAMGISMNLVTYLVGDLHLSSAKSATIVTNFMGTLNLLGLLGGFLADAKLGRYLTVAIFASVTALV  113 (573)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~  113 (573)
                      .+.+++++..+....+|++...+-.-+ ..-|.+...+|.+.......+.++..+.|.++||..+-|.++++......++
T Consensus       267 ~F~il~~~ygi~~g~F~~l~~~l~~~l-~~sgY~~~~aG~ig~l~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v~  345 (480)
T KOG2563|consen  267 QFIILAICYGIGLGLFNSLSTLLNLAL-CPSGYEGVFAGYIGALMIVAGMLGALASGIIADKTKKFKLTTLVLYLFALVG  345 (480)
T ss_pred             cHHHHHHHHhhhHHHHHHHHHHhhhcc-ccccCCccccchhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHH
Confidence            445555555555555665555443233 3457777889999999999999999999999999845566666666665555


Q ss_pred             HHHHHhhccCCCCCCCCCccccccccccccchhhHHHHHHHHHHHHHhcCccccccccccccCCCCCCCchHHHhHHHHH
Q 008231          114 VGLLTSATSIPSMRPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKAMIFFF  193 (573)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  193 (573)
                      .......+..+                      ...+.++..-.+.|.+.....|...-+..|..-|..      -+...
T Consensus       346 ~~~l~~~t~~~----------------------~~~viv~~t~~~~g~~~~~~~Pig~ElgvE~TyPv~------E~tSs  397 (480)
T KOG2563|consen  346 TLMLLTCTLFL----------------------GDSVIVFTTCGLLGFFGTGYLPIGFELGVETTYPVA------EGTSS  397 (480)
T ss_pred             HHHHHHhhccC----------------------CceEehhhhHHHHHHhhcCCCCcceeeeeeeccccC------Ccccc
Confidence            42222211111                      122345555667788888888888888887654433      24455


Q ss_pred             HHHHHHHHhhhHHHHHHhhhhhcccc----hhHHHHHHHHHHHHHHHHHHhcCccccc
Q 008231          194 NRFYFAISIGSLFAVIVLVYVQDNVG----RGWGYGISAGTMVVAAAILLIGTPWYRF  247 (573)
Q Consensus       194 ~~~~~~~~ig~~~~~~~~~~l~~~~g----~~~~f~~~~~~~~~~~~~~~~~~~~~~~  247 (573)
                      |+.+...++-+++=..+-+...+..+    +...-+.....+++..++..+.++.+++
T Consensus       398 Gll~~~gq~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~lva~~r~~y~R  455 (480)
T KOG2563|consen  398 GLLNLSGQIFGVILVFIMGILAEDLGPPGNTFPANIFLTVSALLGAILVAFFRPDYRR  455 (480)
T ss_pred             eeEEeehhHHHHHHHHHHHHHhhccCCCCCCccchhHhHHHHHHHHHHHhhhhhhHHh
Confidence            66555555555555556666666665    3333333334444455555566665544

>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters

Probab=96.98  E-value=0.0069  Score=48.15  Aligned_cols=68  Identities=13%  Similarity=0.012  Sum_probs=60.1

Q ss_pred             HHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHhhc
Q 008231           52 ISMNLVTYLVGDLHLSSAKSATIVTNFMGTLNLLGLLGGFLADAKLGRYLTVAIFASVTALVVGLLTSAT  121 (573)
Q Consensus        52 ~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~  121 (573)
                      ..+ +.+.++++.++|..+.+++.+...+++.++.+...++.++. .+++.+..+++...+.++.+++..
T Consensus        11 yTp-lLP~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~-~~~~~~~~~l~~~~~~~~~ma~~~   78 (85)
T PF06779_consen   11 YTP-LLPLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHS-RPRRLLRAGLLLTVLSTAAMALTH   78 (85)
T ss_pred             HHh-HhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHHHHHh
Confidence            344 44577889999999999999999999999999999999986 888999999999999999998864

Note that many members are hypothetical proteins.

>PRK03612 spermidine synthase; Provisional

Probab=96.72  E-value=0.06  Score=58.67  Aligned_cols=173  Identities=13%  Similarity=0.023  Sum_probs=95.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHH-HHHHHHH
Q 008231           33 LAAGLILGTELSERICAMGISMNLVTYLVGDLHLSSAKSATIVTNFMGTLNLLGLLGGFLADAKLGRYLTVA-IFASVTA  111 (573)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~-~~~~~~~  111 (573)
                      +.+..+.+..-+..+.+.   ....-.+...+|-+..+.+.+++++.++..++..++|+++++. -|+...+ ++..+.+
T Consensus        17 ~~l~~~~f~sg~~~L~yE---v~~~r~l~~~~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~~-~~~~~~~e~~i~l~~   92 (521)
T PRK03612         17 ALLLAAVFVCAACGLVYE---LLLGTLASYLLGDSVTQFSTVIGLMLFAMGVGALLSKYLLRDA-AAGFVAVELLLALLG   92 (521)
T ss_pred             HHHHHHHHHHHHHHHHHH---HHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhH-HHHHHHHHHHHHHHH
Confidence            334444444444444444   3344455667788999999999999999999999999887553 3332211 1111111


Q ss_pred             -HHHHHHHhhccCCCCCCCCCccccccccccccchhhHHHHHHHHHHHHHhcCccccccccccccCCCCCCCchHHHhHH
Q 008231          112 -LVVGLLTSATSIPSMRPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKAMI  190 (573)
Q Consensus       112 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~  190 (573)
                       +...+...+...                     .......++...++.++..|+..|....+..+... ++      -+
T Consensus        93 ~~~~~ll~~~~~~---------------------~~~~~~~~~~~~~~~~~l~G~~~Pl~~~~~~~~~~-~~------~g  144 (521)
T PRK03612         93 GLSALILYAAFAF---------------------QGLSRLLLYVLVLLIGLLIGMEIPLLMRILQRIRD-QH------LG  144 (521)
T ss_pred             HHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cc------hh
Confidence             111111111000                     00111122333445677777777776666554322 12      45


Q ss_pred             HHHHHHHHHHHhhhHHHHHHhhhhhc-ccchh-HHHHHHHHHHHHHHHH
Q 008231          191 FFFNRFYFAISIGSLFAVIVLVYVQD-NVGRG-WGYGISAGTMVVAAAI  237 (573)
Q Consensus       191 ~~~~~~~~~~~ig~~~~~~~~~~l~~-~~g~~-~~f~~~~~~~~~~~~~  237 (573)
                      +..|..+....+|+++|.++.+++.- ..|-. ..+.+..+..+++++.
T Consensus       145 ~~~g~ly~~ntlGa~~G~l~~~~vLlp~lG~~~t~~~~a~l~~~~a~~~  193 (521)
T PRK03612        145 HNVATVLAADYLGALVGGLAFPFLLLPRLGLIRTAALTGSLNLLAALVF  193 (521)
T ss_pred             hhhhhhHhHHhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence            56777788888999999888887654 56744 4444443333344333

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=96.70  E-value=0.016  Score=56.57  Aligned_cols=118  Identities=14%  Similarity=0.197  Sum_probs=75.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCcccchhHHHHHHHHHHHHHHhhhhhhhheeecccCchhHHHHHHHH
Q 008231          411 SLQRVGTGLIFSVIAMIVSAVIEQQRRETSVQKHIQISAFWLVPQYFLVGAGEAFVYVGQLEFFIREGPERMKSMSTGLF  490 (573)
Q Consensus       411 ~~~~~~~g~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~lv~~~~l~g~~~~~~~~~~~~~~~~~~p~~~rg~~~gi~  490 (573)
                      +...+.+|.++..+++..+......       .....+.|.+.....+.+.+....+........+.+|+ .||++.|+.
T Consensus        65 p~~~l~iG~~~~~~GY~~~~l~~~~-------~i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP~-~RG~vvgil  136 (250)
T PF06813_consen   65 PWVVLLIGAVLGFVGYGLLWLAVSG-------RIPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFPR-SRGTVVGIL  136 (250)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhC-------ccCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCcc-ccCceehhh
Confidence            3344778888888888776554321       11224566666666666677666666666667788985 699999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhccCccccccccchhhHHHHHHHHHHHHHHHHHHHHHh
Q 008231          491 LSAISMGMFVSSMLVSIVDKITNKHWLRSNLNKGKLNNFYWLLAVLGLLNFMVFLFFAM  549 (573)
Q Consensus       491 ~~~~~lg~~ig~~~~~~i~~~~~~~w~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~  549 (573)
                      .....+++.+-..+...+.+.             +...+...++....+..++...+.+
T Consensus       137 k~~~GLSaai~t~i~~~~f~~-------------~~~~fll~la~~~~~v~l~~~~~vr  182 (250)
T PF06813_consen  137 KGFFGLSAAIFTQIYSAFFGD-------------DPSSFLLFLAVLPAVVCLVAMFFVR  182 (250)
T ss_pred             hHHHHhHHHHHHHHHHHHcCC-------------ChHHHHHHHHHHHHHHHHHHhhhee
Confidence            999999888877776666531             2234455555555544444434443

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.42  E-value=0.022  Score=63.23  Aligned_cols=178  Identities=15%  Similarity=0.125  Sum_probs=114.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHH-HHHHHhHHHHHhhhc-cchhHHHHHHHHHHH
Q 008231           34 AAGLILGTELSERICAMGISMNLVTYLVGDLHLSSAKSATIVTNFMGT-LNLLGLLGGFLADAK-LGRYLTVAIFASVTA  111 (573)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~-~~~~~~~~G~laDr~-~Grr~~~~~~~~~~~  111 (573)
                      .....+++..++...+-+..+++|-|+++++|.+...+..+.+...+. ..++.+++|++.-|+ ...|.+..+.++...
T Consensus       393 if~~~~l~~~~~~~~~~G~~tFlPKyLE~Qfg~sas~An~l~G~i~vp~~~~Gi~lGG~iikkfkl~~r~~a~~~~~~~~  472 (735)
T KOG3626|consen  393 IFMLVVLASVIESLAITGYITFLPKYLETQFGISASLANILTGSIGVPAAAVGIFLGGLIIKKFKLSARGAAKFVIVCSV  472 (735)
T ss_pred             hHHHHHHHHHHHHHHHhhHHHhhHHHHHHHcCCCHHHHHHHhhhhhhhhhhhhhhccceeeeeecccHHHHHHHHHHHHH
Confidence            455667788888899999999999999999999999999999777654 668899999999886 344555554444444


Q ss_pred             HHHHH---HHhh--c------------cCC--------------------CCCCCCCcccccc-----cc----------
Q 008231          112 LVVGL---LTSA--T------------SIP--------------------SMRPPQCDDYRRK-----HH----------  139 (573)
Q Consensus       112 ~~~~~---~~~~--~------------~~~--------------------~~~~~~~~~~~~~-----~~----------  139 (573)
                      +..+.   ..+.  .            +.+                    +.-.|.|++.+-+     ||          
T Consensus       473 l~l~~~~~~~~igC~~~~~aG~~~~y~~~~~~~~~~~~~s~Cn~~C~C~~~~~~PVCg~~G~tY~SpChAGC~~~~~~~~  552 (735)
T KOG3626|consen  473 LSLLFYSLLFFIGCESSPVAGVTNSYEGSPAFTSHENPFSSCNSDCSCDTSEYEPVCGENGITYFSPCHAGCTESSGTSD  552 (735)
T ss_pred             HHHHHHHHHHEecCCCCcccceecCCCCCCccccCCCchhhhhcCCCCCCcCcCcccCCCCCEEeChhhhCCcccccCCC
Confidence            33333   1110  0            000                    1223445443211     11          


Q ss_pred             --------cccc----------------chhhHHHHHHHHHHHHHhcCccccccccccccCCCCCCCchHHHhHHHHHHH
Q 008231          140 --------QCIE----------------ANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKAMIFFFNR  195 (573)
Q Consensus       140 --------~~~~----------------~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  195 (573)
                              +|.+                +-...+..+++..++.-+..+...+....++-+.+|+++      |..++|+
T Consensus       553 ~~~~ytnCsCv~~~~~~~~~a~~G~C~~~c~~~~~~Fl~~~~~~sf~~~~~~~p~~~i~LR~V~~e~------ks~AlG~  626 (735)
T KOG3626|consen  553 GNTIYTNCSCVPTNKNGNGSAKKGYCPNDCCRQFLIFLALFAIGSFIGALGAVPGMLIVLRCVPPEE------KSFALGF  626 (735)
T ss_pred             CceeeccccccccccCCCceeecCCCCCCcchhhHHHHHHHHHHHHHHHhccCcceEEEEEccCchh------chhhhHH
Confidence                    2222                112233444444444444444444556677778889888      9999999


Q ss_pred             HHHH-HHhhhHHHHHHhhhhhcc
Q 008231          196 FYFA-ISIGSLFAVIVLVYVQDN  217 (573)
Q Consensus       196 ~~~~-~~ig~~~~~~~~~~l~~~  217 (573)
                      ..+. .-+|.+-+|++.|+++|.
T Consensus       627 ~~~~irllg~IPsPIifG~~ID~  649 (735)
T KOG3626|consen  627 QWMLIRLLGFIPSPIIFGAVIDT  649 (735)
T ss_pred             HHHHHHHHhcCCchHhhhhhHhh
Confidence            6654 478889999999999874

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=96.14  E-value=0.0014  Score=71.65  Aligned_cols=179  Identities=15%  Similarity=0.118  Sum_probs=0.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHH-HHHHHHhHHHHHhhhc-cchhHHHHHHHHHH
Q 008231           33 LAAGLILGTELSERICAMGISMNLVTYLVGDLHLSSAKSATIVTNFMG-TLNLLGLLGGFLADAK-LGRYLTVAIFASVT  110 (573)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~-~~~~~~~~~G~laDr~-~Grr~~~~~~~~~~  110 (573)
                      +......++...+.....++..++|-|++.++++++++++.+.+...+ +..++.+++|++..|+ .+.|+.+....+..
T Consensus       305 p~f~~~~la~~~~~~~~~G~~tF~pKylE~QF~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~kl~~~~~~~~~~v~~  384 (539)
T PF03137_consen  305 PVFMCLILAGVFESFIVSGFATFLPKYLESQFGLSASQASLLTGIVSIPGAALGILLGGYIVKKFKLSARGAAKFCIVVS  384 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhhhhcchhheehheEEEEEEEecCcHHHHHHHHHHHH
Confidence            345566777778888888999999999999999999999999988766 5668899999999986 34455555444443


Q ss_pred             HHHHHH---HHhh--cc-------CCC----------CCCCCCccc------cccccccccchhhHHHHHHHHHHHHHhc
Q 008231          111 ALVVGL---LTSA--TS-------IPS----------MRPPQCDDY------RRKHHQCIEANGKQLAMLYAALYTIALG  162 (573)
Q Consensus       111 ~~~~~~---~~~~--~~-------~~~----------~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~l~g~g  162 (573)
                      .++.++   ..+.  .+       .+.          ...+.|+..      .-++-.|...-...+..+++..++..+.
T Consensus       385 ~v~~~~~~~~~~~~C~~~~~aGv~~~y~~~~~~~~~~~~~~~Cn~~~~~~~~~a~~G~C~~~C~~~~~~Fl~~~~~~~~~  464 (539)
T PF03137_consen  385 IVSVILYSPLFFLGCPNPPIAGVTVPYHNSTSSSPSCNLTCSCNSCCSSGNGSATPGKCPSDCCNKLIPFLILLFILSFF  464 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHeecCCCCceeeecCccccccCCCCCCCCCCCCCCccCCCcccccCCCcCcccccccHHHHHHHHHHHHH
Confidence            333332   1110  00       000          000111110      0011133333122444555555555555


Q ss_pred             CccccccccccccCCCCCCCchHHHhHHHHHHHHHH-HHHhhhHHHHHHhhhhhcc
Q 008231          163 GGGIKSNVSGFGSDQFDTSDPKEEKAMIFFFNRFYF-AISIGSLFAVIVLVYVQDN  217 (573)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~-~~~ig~~~~~~~~~~l~~~  217 (573)
                      .+..........-+..|+++      |+.+.|+... ..-+|.+=||++.|.+.|.
T Consensus       465 ~~~~~~p~~~i~LR~V~~~~------rs~AlGv~~~~~rllg~IPgPIifG~iiD~  514 (539)
T PF03137_consen  465 TFMSQVPSTLITLRCVPPEQ------RSFALGVQWLIIRLLGFIPGPIIFGAIIDS  514 (539)
T ss_dssp             --------------------------------------------------------
T ss_pred             HHhcccchheeeeccCChhh------cchhhhHHHHHHHhhcCcchHHHHhHHHhh
Confidence            55555555566668889888      9999999655 4477889999999999874

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=96.01  E-value=0.17  Score=53.53  Aligned_cols=154  Identities=10%  Similarity=-0.101  Sum_probs=114.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHH
Q 008231           34 AAGLILGTELSERICAMGISMNLVTYLVGDLHLSSAKSATIVTNFMGTLNLLGLLGGFLADAKLGRYLTVAIFASVTALV  113 (573)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~  113 (573)
                      .++...++-.+-+++.-+.-..+..|+..+ |+|+...|..-+.-.+.+..+.....++.+|+ |..|+=+++...-..+
T Consensus       259 ~vflas~alalLY~TVLsf~~lmt~yl~~~-G~s~~~igi~R~~gav~Gl~gT~~~p~l~~ri-Glvr~G~~~l~~q~~~  336 (432)
T PF06963_consen  259 PVFLASFALALLYFTVLSFGGLMTAYLKSQ-GYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRI-GLVRAGLWSLWWQWVC  336 (432)
T ss_pred             HHHHHHHHHHHHHHHHhcCcHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchhhHHHHHHHHHHH
Confidence            344444444444444444556678898866 99999999999999999999999999999998 9999888887766665


Q ss_pred             HHHHHhhccCCCCCCCCCccccccccccccchhhHHHHHHHHHHHHHhcCccccccccccccCCCCCCCchHHHhHHHHH
Q 008231          114 VGLLTSATSIPSMRPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKAMIFFF  193 (573)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  193 (573)
                      ..++..+-..+.                +.....+...++.+..+.-+|.-++.-+..-++.|..|+++      |+...
T Consensus       337 L~~~v~~~~~~~----------------~~~~~~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~------Rg~v~  394 (432)
T PF06963_consen  337 LALCVVSFWAPG----------------SPFSSISAYLLLGGIALSRIGLWSFDLAVTQIMQENVPESE------RGAVS  394 (432)
T ss_pred             HHHHHHHHhcCC----------------CCchhhHHHHHHHHHHHHHHHHHhhhHHHHHhhcccCCHHH------hhHHH
Confidence            555544322121                00012456677778888888889999999999999999888      99999


Q ss_pred             HHHHHHHHhhhHHHHHHh
Q 008231          194 NRFYFAISIGSLFAVIVL  211 (573)
Q Consensus       194 ~~~~~~~~ig~~~~~~~~  211 (573)
                      |..+...++--.+-..++
T Consensus       395 gvq~sl~~lf~ll~~~~~  412 (432)
T PF06963_consen  395 GVQNSLQSLFELLSFVLT  412 (432)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            999888888887765544

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=95.77  E-value=0.073  Score=56.27  Aligned_cols=181  Identities=12%  Similarity=-0.025  Sum_probs=110.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC----chhhhHHHHHHHHHHHHHHhHHHHHhhhccchh-------HH
Q 008231           34 AAGLILGTELSERICAMGISMNLVTYLVGDLHLS----SAKSATIVTNFMGTLNLLGLLGGFLADAKLGRY-------LT  102 (573)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s----~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr-------~~  102 (573)
                      ....+++...+.+..+.-..+.+..|..+..+.+    +-..++..+...+...+..|+..++--+. +++       .-
T Consensus       285 ~~~~Lfl~~~iFW~~~~Q~~ssl~~~a~~~v~~~~~g~~vp~~~fQslNp~~Iii~~pI~a~l~~~l-~~~~~~ps~~~K  363 (498)
T COG3104         285 AAIPLFLFAVIFWALYEQMGSSLNLYADRNVNRQIFGFEVPPAWFQSLNPFFIILFSPILAALWTKL-GRGNKQPSTPIK  363 (498)
T ss_pred             HHHHHHHHHHHHHHHHHhccchHHHHHHHhhcccccceecCHHHHHhhCHHHHHHHHHHHHHHHhHh-hcCCCCCCcchH
Confidence            3344444444444444445556666666433222    12345666666666666766666666553 332       22


Q ss_pred             HHHHHHHHHHHHHHHHhhccCCCCCCCCCccccccccccccchhhHHHHHHHHHHHHHhcCccccccccccccCCCCCCC
Q 008231          103 VAIFASVTALVVGLLTSATSIPSMRPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSD  182 (573)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~  182 (573)
                      +.+++.+...+.+++.....                ..+++....+++.++..-+++++|.=+..|...+++....|+.-
T Consensus       364 FalGl~l~g~~fl~l~~~~~----------------~~~~~~~~~s~~~lil~y~l~s~gEL~iSpvGLs~~t~laP~~~  427 (498)
T COG3104         364 FALGLILAGLGFLILLLAGI----------------WFGGPSGLVSVWWLVLSYVLQSFGELFISPVGLSMVTKLAPPAL  427 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHHH----------------hhcCCCCCcCHHHHHHHHHHHHHHHHHhCHHHHHHHHHhChHHH
Confidence            44566666666655554310                01222223467788889999999999999999999999999887


Q ss_pred             chHHHhHHHHHHHHHHHHHhhhHHHHHHhhhh------hcccchhHHHHHHHHHHHHHHHH
Q 008231          183 PKEEKAMIFFFNRFYFAISIGSLFAVIVLVYV------QDNVGRGWGYGISAGTMVVAAAI  237 (573)
Q Consensus       183 ~~~~~~r~~~~~~~~~~~~ig~~~~~~~~~~l------~~~~g~~~~f~~~~~~~~~~~~~  237 (573)
                            .+..++.+......|..++..+.+.-      .+.......|+..+...++..+.
T Consensus       428 ------~s~~ma~wfLt~a~~~~l~g~va~~~~~~~~~~~~~~~~~~F~~~g~v~i~~~~~  482 (498)
T COG3104         428 ------KSFIMAMWFLTVAAGQTLGGQVAGLTAVTDPAYTAFIEGRVFGTIGVVAIVIGIL  482 (498)
T ss_pred             ------HHHHHHHHHHHHHHHHHhhceecccccccchhhhhhhhhhhHHHHHHHHHHHHHH
Confidence                  89999998888888888776666531      12223445566555544433333

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=95.74  E-value=0.06  Score=60.24  Aligned_cols=93  Identities=27%  Similarity=0.486  Sum_probs=74.1

Q ss_pred             CCcccchhHHHHHHHHHHHHHHhhhhhhhheeecccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCccccccc
Q 008231          443 KHIQISAFWLVPQYFLVGAGEAFVYVGQLEFFIREGPERMKSMSTGLFLSAISMGMFVSSMLVSIVDKITNKHWLRSNLN  522 (573)
Q Consensus       443 ~~~~~~~~~lv~~~~l~g~~~~~~~~~~~~~~~~~~p~~~rg~~~gi~~~~~~lg~~ig~~~~~~i~~~~~~~w~~~~~~  522 (573)
                      .....+.+|.++.+++.++++.+.....+.+..+.+|++++....+++.+...+|+.+...+...-...           
T Consensus       559 ~~~~~~~~wq~pq~~~~~~~e~~~~~~~~e~~~~~~p~~mks~~~a~~~~~~~~g~~~~~~~~~~~~~~-----------  627 (654)
T TIGR00926       559 SVNTVSILWQIPQYVILTAGEVLFSVTGLEFSYSQAPPNMKSVLQALWLLTVAIGNLIVVVIAEFENFS-----------  627 (654)
T ss_pred             CCCceeHHHHHHHHHHHHHHHHHHHHHHHHhhHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCh-----------
Confidence            345578899999999999999999999999999999999999999999999999999988876543221           


Q ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHH
Q 008231          523 KGKLNNFYWLLAVLGLLNFMVFLFFA  548 (573)
Q Consensus       523 ~~~~~~~~~~~a~~~~l~~~~~~~~~  548 (573)
                        +...-|..++.+.++..+++..+.
T Consensus       628 --~~~~~~~~~~~~~~~~~~~f~~~a  651 (654)
T TIGR00926       628 --VQAAEFFLFASLMLVVMAIFSILA  651 (654)
T ss_pred             --HHHHHHHHHHHHHHHHHHHHHHHH
Confidence              122456666766666666665554

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=94.97  E-value=0.27  Score=52.40  Aligned_cols=113  Identities=23%  Similarity=0.287  Sum_probs=75.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcccCCcccchhHHHHHHHHHHHHHHhhhhhhhheeeccc---CchhHHHHHHHHH
Q 008231          415 VGTGLIFSVIAMIVSAVIEQQRRETSVQKHIQISAFWLVPQYFLVGAGEAFVYVGQLEFFIREG---PERMKSMSTGLFL  491 (573)
Q Consensus       415 ~~~g~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~lv~~~~l~g~~~~~~~~~~~~~~~~~~---p~~~rg~~~gi~~  491 (573)
                      +.++.++..++.+.++...          ....+.......+++..+|..+.....-+...|..   |.+ +|..++...
T Consensus        62 ~~i~~~~~~~~~~~~~~~~----------~~~~s~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~-~g~lqS~~~  130 (433)
T PF03092_consen   62 MIIGWLLGAVSALVLALLP----------ASESSAAIAVVLLFLASFGYAFADVAADALVVELARREPES-RGDLQSFVW  130 (433)
T ss_pred             HHHHHHHHHHHHHHHHhcc----------cccchhhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCch-hHHHHHHHH
Confidence            6666666655555555442          21223444555667778888888888777777776   444 889999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhhhccCccccccccchhhHHHHHHHHHHHHHHHHHHHHHhh
Q 008231          492 SAISMGMFVSSMLVSIVDKITNKHWLRSNLNKGKLNNFYWLLAVLGLLNFMVFLFFAMK  550 (573)
Q Consensus       492 ~~~~lg~~ig~~~~~~i~~~~~~~w~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~  550 (573)
                      ....+|+.++..+.|...+..+            ....|.+.+.+..+..+..+++.++
T Consensus       131 ~~~~~G~lv~~~l~G~l~~~~~------------~~~~f~i~~~~~~l~~~~~~~~~~e  177 (433)
T PF03092_consen  131 GVRSVGSLVGSLLSGPLLDSFG------------PQGVFLISAALPLLMLIVALFLLEE  177 (433)
T ss_pred             HHHHHHHHHHHHhhhhhhhcCC------------CeEEehHHHHHHHHHHHHHHHhhhh
Confidence            9999999999999988765432            1234555666666665555555554

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=94.81  E-value=0.15  Score=53.12  Aligned_cols=116  Identities=16%  Similarity=0.083  Sum_probs=80.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcccCCcccchhHHHHHHHHHHHHHHhhhhhhhheeecccCch---hHHHHHHHHH
Q 008231          415 VGTGLIFSVIAMIVSAVIEQQRRETSVQKHIQISAFWLVPQYFLVGAGEAFVYVGQLEFFIREGPER---MKSMSTGLFL  491 (573)
Q Consensus       415 ~~~g~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~lv~~~~l~g~~~~~~~~~~~~~~~~~~p~~---~rg~~~gi~~  491 (573)
                      +..|.++..+|++++.+......     ..+..+...+.+++.+.++|.++.=|...++..|+++++   .|.+....+.
T Consensus         4 I~~g~~~~~~G~~ll~l~~~~~~-----~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY   78 (372)
T PF00854_consen    4 ILLGSIVYLLGHVLLTLSAIPPS-----LPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFY   78 (372)
T ss_dssp             HHHHHHHHHHHHHH--HHHTSSS-----C------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHhHHHHhcch-----hhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHH
Confidence            67788888889888666531000     011223456777888899999999999999999998754   5677777888


Q ss_pred             HHHHHHHHHHHHHHHHHhhhhccCccccccccchhhHHHHHHHHHHHHHHHHHHHH
Q 008231          492 SAISMGMFVSSMLVSIVDKITNKHWLRSNLNKGKLNNFYWLLAVLGLLNFMVFLFF  547 (573)
Q Consensus       492 ~~~~lg~~ig~~~~~~i~~~~~~~w~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~  547 (573)
                      ...++|..++..+.+++.+..            +....|++.++..+++.+.++.-
T Consensus        79 ~~in~G~~~~~~~~~~i~~~~------------~~~~~f~i~~~~~~~~~~~f~~~  122 (372)
T PF00854_consen   79 WGINIGSLFSPTLVPYIQQNY------------GWFLGFGIPAIGMLLALIVFLSG  122 (372)
T ss_dssp             HHHHHHHHHHHHCCCHHHHCS-------------HHHHHHHHHHHHHHHHHHHHCC
T ss_pred             HHHhhhhHhhcccchhhcccc------------chhhhhhHHHHHHHHHHHHHHhC
Confidence            999999999999999987532            23456777777777666655443

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]

Probab=94.62  E-value=6.7  Score=40.91  Aligned_cols=57  Identities=16%  Similarity=0.230  Sum_probs=43.0

Q ss_pred             chhHHHHHHHHHHHHHHhhhhhhhheeecccCchhHHHHHHHHHHHHHHHHHHHHHH
Q 008231          448 SAFWLVPQYFLVGAGEAFVYVGQLEFFIREGPERMKSMSTGLFLSAISMGMFVSSML  504 (573)
Q Consensus       448 ~~~~lv~~~~l~g~~~~~~~~~~~~~~~~~~p~~~rg~~~gi~~~~~~lg~~ig~~~  504 (573)
                      +-+|.+....+.|+..+-.....+.+..+.+|++.+..+..++.++...|-..|..+
T Consensus       342 ~~~~~~~l~~~lglsnGYltsl~m~~aPk~v~~~e~e~aG~~m~~fl~~Gl~~G~~~  398 (406)
T KOG1479|consen  342 SDGWFIFLMSLLGLSNGYLTSLIMMYAPKQVKPSEKEAAGNLMVFFLVGGLALGSLL  398 (406)
T ss_pred             CchHHHHHHHHHHhccchHhhheehhcCCCCChHHHHHHHHHHHHHHHHHHHHhhHH
Confidence            345667777888998888888899999999999888888777666665555555444

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=94.57  E-value=0.16  Score=52.92  Aligned_cols=61  Identities=18%  Similarity=0.182  Sum_probs=53.0

Q ss_pred             HHHHHHHHHHHHHhcCccccccccccccCCCCCCCchHHHhHHHHHHHHHHHHHhhhHHHHHHhhhh
Q 008231          148 QLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKAMIFFFNRFYFAISIGSLFAVIVLVYV  214 (573)
Q Consensus       148 ~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~~~~~l  214 (573)
                      +.+.+++..+..|+..|..+.+....+.|..|+++      |..+++....+-++|..++.+++-++
T Consensus       334 si~ivf~lif~eGLlGGa~YVNtF~~I~~~~~~~~------REFslg~vsvsds~GI~lAgll~l~l  394 (402)
T PF02487_consen  334 SIWIVFVLIFYEGLLGGASYVNTFYRISEEVPPED------REFSLGAVSVSDSLGILLAGLLGLPL  394 (402)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCHHH------HHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            67777788888999999999999999999888877      99999999999999998887776554

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>KOG3097 consensus Predicted membrane protein [Function unknown]

Probab=94.47  E-value=0.55  Score=47.06  Aligned_cols=116  Identities=16%  Similarity=0.069  Sum_probs=72.4

Q ss_pred             CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHH
Q 008231           29 TGGWLAAGLILGTELSERICAMGISMNLVTYLVGDLHLSSAKSATIVTNFMGTLNLLGLLGGFLADAKLGRYLTVAIFAS  108 (573)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~  108 (573)
                      +..-|.++.+....++....|-+... +...+..++|    ..+  .+.........+++.+.+..++ |-|+++.++..
T Consensus        25 ~~~~knv~i~s~~fl~~f~a~~gl~n-lq~~vn~~lg----~~s--l~~~y~~l~~s~m~~~~~Ir~~-g~K~tm~lav~   96 (390)
T KOG3097|consen   25 LGILKNVLILSIAFLLTFTAYLGLQN-LQTSVNYDLG----TVS--LGALYLSLIDSSMFMPLLIRFL-GTKWTMVLAVF   96 (390)
T ss_pred             cchhhhhhHHHHHHHHHHHHHHHHHH-HHHHHhcCcc----cch--hhhhhHHHHHHHHHHHHHHHHH-hhHHHHHHHHH
Confidence            34445677777766666666655543 3333333332    222  1223444455556666777776 99999998877


Q ss_pred             HHHHHHHHHHhhccCCCCCCCCCccccccccccccchhhHHHHHHHHHHHHHhcCccccccccccccCCCC
Q 008231          109 VTALVVGLLTSATSIPSMRPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFD  179 (573)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~  179 (573)
                      .+....     ++++.                      +.+..++.+-...|.|.+..+..-.++++++-.
T Consensus        97 ~Y~lyi-----A~Nl~----------------------pr~~tlVPa~~~~G~aa~p~W~SkgtYlT~~g~  140 (390)
T KOG3097|consen   97 PYALYI-----AANLE----------------------PRYETLVPAGLVLGMAAGPIWASKGTYLTPMGQ  140 (390)
T ss_pred             HHHHHH-----Hhhcc----------------------hhHHhhccHHHhhccccccccccCcceecHHHH
Confidence            665532     22222                      466677788888999999999988888887643

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.81  E-value=1.1  Score=47.72  Aligned_cols=158  Identities=15%  Similarity=-0.009  Sum_probs=92.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhh--hcCCCchhhhHHHHHH-HHHHHHHHhHHHHHhhh---ccchhHHHHHHHH
Q 008231           35 AGLILGTELSERICAMGISMNLVTYLVG--DLHLSSAKSATIVTNF-MGTLNLLGLLGGFLADA---KLGRYLTVAIFAS  108 (573)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~--~~~~s~~~~~~~~~~~-~~~~~~~~~~~G~laDr---~~Grr~~~~~~~~  108 (573)
                      +..+....+..++......+..|..+.-  .++.+....-.+.+.. ..+..++.++.+.+++|   + ||++++.++..
T Consensus       242 ml~L~~~f~~tG~~~Sf~~~iypt~i~ft~~~~~n~~~~~ai~~~~~g~g~v~~g~~~~~l~~rir~f-g~~~~~~~~~~  320 (461)
T KOG3098|consen  242 MLLLFPFFFYTGLETSFWISIYPTCISFTRKLGSNTTYLIAIYSIGIGLGEVIGGLDFSILSKRIRGF-GRKPTVLIGII  320 (461)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccchhhhhhhhccCcchhHHHHHHHHHhHHHHHHHHHHHHHhhhhhhc-ccCcchhHHHH
Confidence            3334443344333333334444444442  3444443332222222 23333445555666544   5 89999999999


Q ss_pred             HHHHHHHHHHhhccCCCCCCCCCcccc-ccccccccchhhHHHHHHHHHHHHHhcCccccccccccccCCCCCCCchHHH
Q 008231          109 VTALVVGLLTSATSIPSMRPPQCDDYR-RKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEK  187 (573)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~~~~~  187 (573)
                      +..++.++.-+..  |       .|.. |.+.+-....+++....++.-++.|++.+........++++.+| ++     
T Consensus       321 ~~~~~~~li~l~~--p-------~dap~~~t~~~~~~~~~~~~~~~ii~~l~G~~D~~~~t~~~~ii~~~~~-~~-----  385 (461)
T KOG3098|consen  321 IHLIGFLLIHLSF--P-------NDAPLRPTDSPPLLFTPSYYLALIIGFLLGFGDACFNTQRYVIIALLYP-DD-----  385 (461)
T ss_pred             HHHHHHHHHhccc--c-------ccCCCCCCcccccccccchhHHHHHHHHHhhHHHHHHHHHHHHHHHHhc-Cc-----
Confidence            8888877776643  2       1221 11123333444566666777788999999999999999999994 44     


Q ss_pred             hHHHHHHHHHHHHHhhhHHHHH
Q 008231          188 AMIFFFNRFYFAISIGSLFAVI  209 (573)
Q Consensus       188 ~r~~~~~~~~~~~~ig~~~~~~  209 (573)
                       |..+++++..-..++..++-.
T Consensus       386 -~~~~fsi~kfyq~~~s~v~~f  406 (461)
T KOG3098|consen  386 -RAQAFSLFKFYQSVASCVAFF  406 (461)
T ss_pred             -hHHHHHHHHHHHHHHHHHHhh
Confidence             788888776666666655433

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=93.43  E-value=1.2  Score=40.13  Aligned_cols=62  Identities=18%  Similarity=0.365  Sum_probs=52.6

Q ss_pred             chhHHHHHHHHHHHHHHhhhhhhhheeecccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008231          448 SAFWLVPQYFLVGAGEAFVYVGQLEFFIREGPERMKSMSTGLFLSAISMGMFVSSMLVSIVD  509 (573)
Q Consensus       448 ~~~~lv~~~~l~g~~~~~~~~~~~~~~~~~~p~~~rg~~~gi~~~~~~lg~~ig~~~~~~i~  509 (573)
                      ..+.+++..++.|++.+..+...-.++.+...++.+++..+++-.....+.++|..+.-.+.
T Consensus        88 ~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~~~  149 (156)
T PF05978_consen   88 NSYTLYPASALLGFGAALLWTAQGTYLTSYSTEETIGRNTGIFWAIFQSSLIFGNLFLFFIF  149 (156)
T ss_pred             hHHHHHHHHHHHhhhhHHhhHhhhHHHHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45677888899999999999999999999999999999999988888888888877755443

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]

Probab=93.37  E-value=13  Score=39.81  Aligned_cols=63  Identities=13%  Similarity=0.112  Sum_probs=51.6

Q ss_pred             hhHHHHHHHHHHHHHHhhhhhhhheeecccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008231          449 AFWLVPQYFLVGAGEAFVYVGQLEFFIREGPERMKSMSTGLFLSAISMGMFVSSMLVSIVDKI  511 (573)
Q Consensus       449 ~~~lv~~~~l~g~~~~~~~~~~~~~~~~~~p~~~rg~~~gi~~~~~~lg~~ig~~~~~~i~~~  511 (573)
                      +..++...++..+.....+....++-.+++.|..-|+++.+.|...++|+--...++-+..|.
T Consensus       405 f~lvI~~~~l~sf~stvmFVai~AFharISDP~IGGTYMTLLNTvSNLGGtWP~~~vL~lVD~  467 (544)
T PF13000_consen  405 FLLVIIQHVLSSFMSTVMFVAIMAFHARISDPAIGGTYMTLLNTVSNLGGTWPRTFVLWLVDY  467 (544)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccchHHHHHHHHHHhcCCCchHHHHHHHhhh
Confidence            344556678888888888899999999999999999999999999999998777666655543

This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane

>KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism]

Probab=92.85  E-value=0.96  Score=45.78  Aligned_cols=153  Identities=12%  Similarity=0.015  Sum_probs=80.3

Q ss_pred             HHHHHHHh-hhcCCCchhhh-HHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHhhccCCCCCCCCC
Q 008231           54 MNLVTYLV-GDLHLSSAKSA-TIVTNFMGTLNLLGLLGGFLADAKLGRYLTVAIFASVTALVVGLLTSATSIPSMRPPQC  131 (573)
Q Consensus        54 ~~l~~yl~-~~~~~s~~~~~-~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  131 (573)
                      +++.+|+. .+.+++..|.. -+.-...-.+.+.-++.=.+.|.. --|++++.-.+...+.-.++-+..+         
T Consensus        25 P~~tpyl~gp~~NlT~~~l~~evyPvwTYSYLv~LvpvFlLTD~l-rYKPvivlq~ls~v~~w~~lv~g~s---------   94 (433)
T KOG3810|consen   25 PYLTPYLLGPDKNLTEDQLTNEVYPVWTYSYLVGLVPVFLLTDYL-RYKPVVVLQALSGVPVWIMLVFGPS---------   94 (433)
T ss_pred             CccchhccCCCCCccHHHHhcccccchhHHHHHHHHHHHHHhhhh-hcceeeeeeccchhHHHHHHHhcCC---------
Confidence            45666766 56677776654 222233334444444444688976 4566665554444444455555432         


Q ss_pred             ccccccccccccchhhHHHHHHHHHHHHHhcCccccccccccccCCCCCCCchHHHhHHHHHHHHHHHHHhhhHHHHHHh
Q 008231          132 DDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKAMIFFFNRFYFAISIGSLFAVIVL  211 (573)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~~~  211 (573)
                                       .+.+=+.-+..|...+.. .+-++++-+..++++      +-++.+....+.-.|-..|..++
T Consensus        95 -----------------V~~mQvlE~FyG~~tAaE-IAYysYIYs~Vd~~~------Yqrvt~y~RaA~L~g~~~g~vla  150 (433)
T KOG3810|consen   95 -----------------VKAMQVLEFFYGPATAAE-IAYYSYIYSKVDPEM------YKRVTGYCRAAFLVGKFVGSVLA  150 (433)
T ss_pred             -----------------chheeeehhhcChHHHHH-HhhhheeeeecCHHH------HHHHHHHhHHHHHHHhHHHhHHH
Confidence                             222223333444433332 234455555556555      77777777777777777666665


Q ss_pred             hhhhc--ccchhHHHHHHHHHHHHHHHHHHh
Q 008231          212 VYVQD--NVGRGWGYGISAGTMVVAAAILLI  240 (573)
Q Consensus       212 ~~l~~--~~g~~~~f~~~~~~~~~~~~~~~~  240 (573)
                      -.+..  ..++...=.++.....++.++.++
T Consensus       151 QlLvs~~~~sy~~LN~ISL~~~~ia~~~A~f  181 (433)
T KOG3810|consen  151 QLLVSLETLSYTTLNYISLAEVTIAVLLALF  181 (433)
T ss_pred             HHHhhhcccchhhhchhhHHHHHHHHHHHhh
Confidence            55543  233443334555555555544433

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=92.84  E-value=15  Score=39.12  Aligned_cols=57  Identities=11%  Similarity=0.207  Sum_probs=47.8

Q ss_pred             hhHHHHHHHHHHHHHHhhhhhhhheeecccCchhHHHHHHHHHHHHHHHHHHHHHHH
Q 008231          449 AFWLVPQYFLVGAGEAFVYVGQLEFFIREGPERMKSMSTGLFLSAISMGMFVSSMLV  505 (573)
Q Consensus       449 ~~~lv~~~~l~g~~~~~~~~~~~~~~~~~~p~~~rg~~~gi~~~~~~lg~~ig~~~~  505 (573)
                      -++.++..++.|+..+......+.+..+.++++.|..+..++.++..+|-.+|+.+.
T Consensus       372 d~~~~~~~~l~gltnGy~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l~  428 (437)
T TIGR00939       372 DAYFIILMLLFGFSNGYLGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVLS  428 (437)
T ss_pred             cHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345566688999999999999999999999999999999988888888887777663

>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions

Probab=92.44  E-value=16  Score=39.62  Aligned_cols=166  Identities=13%  Similarity=-0.006  Sum_probs=90.6

Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC---CchhhhHHHHHHHH-HHHHHHhHHHHHhhhccchhHHHHHH
Q 008231           31 GWLAAGLILGTELSERICAMGISMNLVTYLVGDLHL---SSAKSATIVTNFMG-TLNLLGLLGGFLADAKLGRYLTVAIF  106 (573)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~---s~~~~~~~~~~~~~-~~~~~~~~~G~laDr~~Grr~~~~~~  106 (573)
                      .++.++.+.+.-++-.+.|..+..     +++.+=.   ++....++-....+ ...+...+-.+++|++ +|.+++.+.
T Consensus        22 E~~k~~~l~~m~f~i~f~y~~lR~-----~KD~lvvt~~gae~I~flK~~~vlP~a~~f~~~y~kl~n~~-s~~~lFy~~   95 (491)
T PF03219_consen   22 ELKKFLPLALMFFFILFNYTILRD-----LKDTLVVTAQGAEVIPFLKVWGVLPVAILFTILYSKLSNRL-SREKLFYII   95 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-----hcCeEEEecCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CHHHHHHHH
Confidence            445666666666666555533322     2332211   33444444443333 3445567779999998 999998877


Q ss_pred             HHHHHHHHHHHHhhccCCC--CC--CCCCccccccccccccchhhHHHHH---------HHHHHHHHhcCccccc-cccc
Q 008231          107 ASVTALVVGLLTSATSIPS--MR--PPQCDDYRRKHHQCIEANGKQLAML---------YAALYTIALGGGGIKS-NVSG  172 (573)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~l~g~g~~~~~~-~~~~  172 (573)
                      ...+.....+.++.- +|.  ..  ...|++    .+   ...+..+..+         .+.-...-+-.....+ .-++
T Consensus        96 ~~~F~~fF~~f~~vl-yP~~~~lhp~~~~~~----~~---~~~~~~~~~~i~~~~~Wt~slfYv~aElwgsvvlSlLFW~  167 (491)
T PF03219_consen   96 IIPFLGFFALFAFVL-YPNRDILHPDAFADK----LL---AILPPGFKGFIAMFRNWTFSLFYVMAELWGSVVLSLLFWG  167 (491)
T ss_pred             HHHHHHHHHHHHHHH-hhchhhcCCCHHHHH----hh---hhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            777666666665532 120  00  000100    00   0000111110         0000111111112222 3467


Q ss_pred             cccCCCCCCCchHHHhHHHHHHHHHHHHHhhhHHHHHHhhhhhc
Q 008231          173 FGSDQFDTSDPKEEKAMIFFFNRFYFAISIGSLFAVIVLVYVQD  216 (573)
Q Consensus       173 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~~~~~l~~  216 (573)
                      +..|.++.++      -.+.++.+..+.|+|.+++..+..++.+
T Consensus       168 fAN~itt~~e------AKRfYpl~g~ganigli~sG~~~~~~~~  205 (491)
T PF03219_consen  168 FANEITTVEE------AKRFYPLFGLGANIGLIFSGQLTSYFSS  205 (491)
T ss_pred             HHHhcCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8889888887      8899999999999999999888888876

One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=92.20  E-value=15  Score=39.45  Aligned_cols=58  Identities=12%  Similarity=0.001  Sum_probs=46.4

Q ss_pred             HHHHHHHHHHHHhhhh-hhhheeecccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008231          453 VPQYFLVGAGEAFVYV-GQLEFFIREGPERMKSMSTGLFLSAISMGMFVSSMLVSIVDK  510 (573)
Q Consensus       453 v~~~~l~g~~~~~~~~-~~~~~~~~~~p~~~rg~~~gi~~~~~~lg~~ig~~~~~~i~~  510 (573)
                      .++++...+-...+.. ..|+++.|....+...+-.++.....++|..+++.+..++.+
T Consensus       132 ~~FYv~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~~  190 (472)
T TIGR00769       132 ALFYVMAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFSK  190 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455555544444444 889999999999999999999999999999999999888764

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=92.14  E-value=14  Score=37.88  Aligned_cols=111  Identities=12%  Similarity=0.046  Sum_probs=62.7

Q ss_pred             ccccchhhHHHHHHHHHhhhhhhhhhhcccccccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCcccchhHH
Q 008231          373 SGSLSAFLFITILLFTSLNEKVFVPLARKITHSIQGMTSLQRVGTGLIFSVIAMIVSAVIEQQRRETSVQKHIQISAFWL  452 (573)
Q Consensus       373 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~l  452 (573)
                      .+.+........++++++.+.+.|+.+||+.           -+...++.+++.+    ..           +....+.+
T Consensus        71 Ia~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~-----------cl~~cily~~scl----~k-----------~~~~~~~L  124 (354)
T PF05631_consen   71 IAILFVAGFASSAIFGTFVGSLADRYGRKKA-----------CLLFCILYSLSCL----TK-----------HSSNYPVL  124 (354)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCchHH-----------HHHHHHHHHHHHH----HH-----------hccccHHH
Confidence            4556667778888889999999888887742           1222222222222    11           12356777


Q ss_pred             HHHHHHHHHHHHhhhhhhhhee-e----cccCchhHHHHHHHHH-HHHHHHHHHHHHHHHHHh
Q 008231          453 VPQYFLVGAGEAFVYVGQLEFF-I----REGPERMKSMSTGLFL-SAISMGMFVSSMLVSIVD  509 (573)
Q Consensus       453 v~~~~l~g~~~~~~~~~~~~~~-~----~~~p~~~rg~~~gi~~-~~~~lg~~ig~~~~~~i~  509 (573)
                      ++.-++.|++..+.....-++. .    +-.|++..+...+... ..+.+-.++++.+.....
T Consensus       125 ~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~  187 (354)
T PF05631_consen  125 LLGRVLGGIATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLA  187 (354)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHH
Confidence            8888888888877766544432 2    3356665555555444 223333344444444433

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=90.19  E-value=0.46  Score=49.77  Aligned_cols=181  Identities=12%  Similarity=-0.100  Sum_probs=91.8

Q ss_pred             CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-c-CCCc---------------hhhhHHHHHHHHHHHHHHhHHHH
Q 008231           29 TGGWLAAGLILGTELSERICAMGISMNLVTYLVGD-L-HLSS---------------AKSATIVTNFMGTLNLLGLLGGF   91 (573)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~-~-~~s~---------------~~~~~~~~~~~~~~~~~~~~~G~   91 (573)
                      ...+|..+.++...++.+++.+...-+-+.++-+. + |-+.               ..-.|=..++.+...+.+..--+
T Consensus       275 ~~mpr~m~~L~i~~lltW~a~f~f~LF~TDfmG~~vy~GDp~a~~~S~a~~~Y~~GV~~G~~GL~ins~~lgi~S~~~~~  354 (498)
T KOG0637|consen  275 KVMPRPMRMLLIVTLLTWIAWFPFLLFDTDFMGREVYGGDPKADENSEAKKLYNAGVRMGCLGLMLNSIVLGIYSLLVEK  354 (498)
T ss_pred             hhCChhHHHHHHHHHHHHHHHHHHHHHHHHhcchHhhCCCCCCCcchhHHHHHHhccccchHHHHHHHHHHHHHHHHHHH
Confidence            44667889999999999999877776666666542 1 1111               11123456677888888999999


Q ss_pred             HhhhccchhHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCccccccccccccchhhHHHHHHHHHHHHHhcCcccccccc
Q 008231           92 LADAKLGRYLTVAIFASVTALVVGLLTSATSIPSMRPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVS  171 (573)
Q Consensus        92 laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~  171 (573)
                      +.||+ |-|+.++.+...+.++..+..+..+.....     ..++..-....+.....+.+...-...++-.+.......
T Consensus       355 l~~~~-g~r~~y~~~~~~f~~~~~~~gl~~~~~~~~-----~~~~~~G~~~~~~~~~p~~l~~~y~~~g~~~a~t~~~pf  428 (498)
T KOG0637|consen  355 LSRKF-GTRKRYWGGVNAFGLATGLAGLVLNTYVVL-----SHRSTAGILSSPLLTVPYGALALYAILGIPLAITFSIPF  428 (498)
T ss_pred             HHHhc-CcceEEeehhHHHHHHHHHHhhhhhHHHHH-----HHHhhcceeecchhcccHHHHHHHHHhCCcccccccccc
Confidence            99998 856555555443444444443321000000     000000000000001111122212223333333333333


Q ss_pred             ccccCCCCCCCchHHHhHHHHHHHHHHHHHhhhHHHHHHhhhhhcccc
Q 008231          172 GFGSDQFDTSDPKEEKAMIFFFNRFYFAISIGSLFAVIVLVYVQDNVG  219 (573)
Q Consensus       172 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~~~~~l~~~~g  219 (573)
                      +..+.......   ++ +|.-.++.+..+.+..++.....|.+.+..|
T Consensus       429 ~~~s~~~~~sg---~g-~G~~~gvln~~I~ipQvivs~~~Gp~~~~~G  472 (498)
T KOG0637|consen  429 ALASIEIGNSG---LG-QGLDLGVLNCAIVIPQVLVSLGLGPLDQLFG  472 (498)
T ss_pred             ccccccccCcc---CC-CCceeeeeeeeeeehhheeeccccchhhhcC
Confidence            33332222222   11 3566667787888888877777777766665

>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS)

Probab=89.44  E-value=4.9  Score=39.18  Aligned_cols=56  Identities=11%  Similarity=0.068  Sum_probs=36.5

Q ss_pred             HHHHHHHHHHHHHhhhHHHHHHhhhh---hc--ccchhHHHHHHHHHHHHHHHHHHhcCcc
Q 008231          189 MIFFFNRFYFAISIGSLFAVIVLVYV---QD--NVGRGWGYGISAGTMVVAAAILLIGTPW  244 (573)
Q Consensus       189 r~~~~~~~~~~~~ig~~~~~~~~~~l---~~--~~g~~~~f~~~~~~~~~~~~~~~~~~~~  244 (573)
                      |+....+..++.++|+++.-+..-.-   .+  .-.|++++.+.+++.++-++.+.+..++
T Consensus         4 K~~~s~~n~~gf~iG~ii~~ipF~~~~~~~~~~~~~W~~I~si~~lL~~IpLIly~ifGk~   64 (267)
T PF07672_consen    4 KSILSQFNPWGFNIGTIIVNIPFLISSSVVIALTNNWQWILSIFILLIFIPLILYIIFGKN   64 (267)
T ss_pred             cceeeeeccccchhhHHHHHhhHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            66777777788899998874432211   11  2259998888877777666666555444

>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=87.12  E-value=3.2  Score=40.56  Aligned_cols=140  Identities=16%  Similarity=0.047  Sum_probs=85.5

Q ss_pred             hhhHHHHHHHHHHHHHHhHHHHHhhhccchh--HHHHHHHHHHHHHHHHHHhhcc-CCCCCCCCCccccccccccccchh
Q 008231           70 KSATIVTNFMGTLNLLGLLGGFLADAKLGRY--LTVAIFASVTALVVGLLTSATS-IPSMRPPQCDDYRRKHHQCIEANG  146 (573)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  146 (573)
                      --|.+.+.|+++..+++-+..++..|- ..|  ..+.+..++......+..+..+ .|+                    .
T Consensus       283 PhGfiFatFMlASmLGSSla~Rl~s~s-~~~ve~ymqivf~vs~a~l~Lpilt~~vsP~--------------------k  341 (454)
T KOG4332|consen  283 PHGFIFATFMLASMLGSSLASRLLSRS-SPKVESYMQIVFLVSIAALLLPILTSSVSPS--------------------K  341 (454)
T ss_pred             CchhHHHHHHHHHHHhhHHHHHHHhcC-CcccchHHHHHHHHHHHHHHHHHHHhccCCC--------------------c
Confidence            458899999999888888887877664 222  3344444443333322222111 111                    1


Q ss_pred             hHHHHHHHHHHHHHhcCccccccccccccCCCCCCCchHHHhHHHHHHHHHHHHHhhhHHHHHHhhhhhcccchhHHHHH
Q 008231          147 KQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKAMIFFFNRFYFAISIGSLFAVIVLVYVQDNVGRGWGYGI  226 (573)
Q Consensus       147 ~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~~~~~l~~~~g~~~~f~~  226 (573)
                      .+...-+++-.+.-.+.|.++|....+=+++.|+++      |...++++..-.|+-.-++-..--.=....+-|..|.+
T Consensus       342 es~~~s~i~F~~~E~cvGlfwPSimkmRsqyIPEea------rstimNfFRvPLnifvClvLynlh~~~~p~~tr~mf~i  415 (454)
T KOG4332|consen  342 ESPSESLIGFCLFEACVGLFWPSIMKMRSQYIPEEA------RSTIMNFFRVPLNIFVCLVLYNLHVDAFPTTTRNMFGI  415 (454)
T ss_pred             CCchHHHHHHHHHHHHHhhcchHHHHHHHhhCCHHH------HhhhhhheechhhHhhhhhheecccccCccccchhhhh
Confidence            122333555556677889999999999999999988      99999998887777554432110000112345677877


Q ss_pred             HHHHHHHHHH
Q 008231          227 SAGTMVVAAA  236 (573)
Q Consensus       227 ~~~~~~~~~~  236 (573)
                      +.+...++.+
T Consensus       416 cS~~~~~a~i  425 (454)
T KOG4332|consen  416 CSAFLFVASI  425 (454)
T ss_pred             hHHHHHHHHH
Confidence            7776665544

>KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only]

Probab=87.03  E-value=3.6  Score=41.08  Aligned_cols=57  Identities=14%  Similarity=0.261  Sum_probs=37.6

Q ss_pred             hhHHHHHHHHHHHHHHhhhhhhhheeecccCchhHHHHHHHHHHHHHHHHHHHHHHH
Q 008231          449 AFWLVPQYFLVGAGEAFVYVGQLEFFIREGPERMKSMSTGLFLSAISMGMFVSSMLV  505 (573)
Q Consensus       449 ~~~lv~~~~l~g~~~~~~~~~~~~~~~~~~p~~~rg~~~gi~~~~~~lg~~ig~~~~  505 (573)
                      .+.+....++-|+-.+..+...+--+.+..+++.|-.+++...+.-++|-.+++.+.
T Consensus       342 i~ivf~lI~~EGLlGGasYVNTf~~i~~e~~pd~rEfamsavs~sDS~Gi~lA~~la  398 (409)
T KOG3880|consen  342 IWIVFALILFEGLLGGASYVNTFHNIHKETEPDVREFAMSAVSISDSIGIFLAGLLA  398 (409)
T ss_pred             HHHHHHHHHHHhhcCchHHHHHHHHHhhcCCchHHHHhHhhheecchhhHHHHHHHh
Confidence            333333334445544455566666677778888999999988887777777766664

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=85.01  E-value=4.2  Score=43.40  Aligned_cols=57  Identities=11%  Similarity=0.082  Sum_probs=42.9

Q ss_pred             HHHHHHHHHHHHHhcCccccccccccccCCCCCCCchHHHhHHHHHHHHHHHHHhhhHHHHHH
Q 008231          148 QLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKAMIFFFNRFYFAISIGSLFAVIV  210 (573)
Q Consensus       148 ~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~~  210 (573)
                      +-+..++..++.|+..|-..+....+..+..++++      |..+-.+...+.++|-..|..+
T Consensus       371 ~d~~~~~~~~l~gltnGy~~s~~m~~~p~~v~~~e------~e~aG~~~~~~l~~Gl~~Gs~l  427 (437)
T TIGR00939       371 GDAYFIILMLLFGFSNGYLGSLSMCLAPRQVDPHE------REVAGALMVIFLLVGLALGAVL  427 (437)
T ss_pred             ccHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCHHH------HHHHHHHHHHHHHHHHHHHHHH
Confidence            33455666788999999988888888888877655      7777777777777777777554

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=82.16  E-value=11  Score=36.36  Aligned_cols=63  Identities=17%  Similarity=0.193  Sum_probs=48.0

Q ss_pred             chhHHHHHHHHHHHHHHhhhhhhhheeecccCc-hhHHHHHHHHHH-HHHHHHHHHHHHHHHHhh
Q 008231          448 SAFWLVPQYFLVGAGEAFVYVGQLEFFIREGPE-RMKSMSTGLFLS-AISMGMFVSSMLVSIVDK  510 (573)
Q Consensus       448 ~~~~lv~~~~l~g~~~~~~~~~~~~~~~~~~p~-~~rg~~~gi~~~-~~~lg~~ig~~~~~~i~~  510 (573)
                      ..+.++......|++.+...+....++.+..|+ +.|+...+.... ...+|..+++.+.+.+..
T Consensus        93 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (338)
T COG0477          93 GLALLLILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLG  157 (338)
T ss_pred             hHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344555555557888888889999999999998 678888888887 577788888866666654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	573
2xut_A	524	Crystal Structure Of A Proton Dependent Oligopeptid		2e-15

>pdb|2XUT|A Chain A, Crystal Structure Of A Proton Dependent Oligopeptide (Pot) Family Transporter. Length = 524

Iteration: 1
 Score = 80.5 bits (197), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 102/426 (23%), Positives = 171/426 (40%), Gaps = 31/426 (7%)
Query: 152 LYAALYTIALGGGGIKSNVSGFGSDQFDTSDPK-EEKAMIFFFNRFYFAISIGSLFAVIV 210
            Y  L+ IALG GGIK  VS F  DQFD S+    +KA    F+ FYF I+ GS FA + 
Sbjct: 112 FYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKA----FDMFYFTINFGSFFASLS 167
Query: 211 LVYVQDNVGRGWGYGISAGTMVVAAAILLIGTPWY-----RFKKPRGSPLTVIWRVLLLA 265
           +  +  N G    +GI    M VA     +G   Y       K P G  L VI   LL  
Sbjct: 168 MPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPPEPKDPHGF-LPVIRSALLTK 226
Query: 266 WKKRSH---PYPDHPSLLNEYQNAKVPHTEKFKCLDKAAIIEDNAV---ANENKNNSWIV 319
            + + +          +   Y    +P       L  A ++    V   A+     +   
Sbjct: 227 VEGKGNIGLVLALIGGVSAAYALVNIPTLGIVAGLCCAMVLVMGFVGAGASLQLERARKS 286
Query: 320 STVTEVEEVKMVLKLLPIWATCILFWTVYSQMTTFTVEQATFMNRKIGSFTVPSGXXXXX 379
                V+ V+ VL++L ++A    FW+++ Q  +  + QA   N  +             
Sbjct: 287 HPDAAVDGVRSVLRILVLFALVTPFWSLFDQKASTWILQA---NDMVKPQWFEPAMMQAL 343
Query: 380 XXXXXXXXXXXNEKVFVPLARKITHSIQGMTSLQRVGTGLIFSVIAMIVSAVIEQQRRET 439
                      N  V  P   ++      +T+L+++G G+  + ++ IV   I+      
Sbjct: 344 NPLLVMLLIPFNNFVLYPAIERMGVK---LTALRKMGAGIAITGLSWIVVGTIQLMMDGG 400
Query: 440 SVQKHIQISAFWLVPQYFLVGAGEAFVYVGQLEFFIREGPERMKSMSTGLFLSAISMG-M 498
           S      +S FW +  Y L+  GE  V    LEF   + P+ MK      +  ++++G +
Sbjct: 401 SA-----LSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNL 455
Query: 499 FVSSMLVSIVDKITNKHWLRSNLNKGKLNNFYWLLAVLGLLNFMVFLFFAMKHQYNVQHR 558
           +V    VS+      +  +++ ++      F++  A   +L  +VF  +A  +Q    +R
Sbjct: 456 WVLLANVSVKSPTVTEQIVQTGMSVTAFQMFFF--AGFAILAAIVFALYARSYQMQDHYR 513
Query: 559 VKGDKE 564
                E
Sbjct: 514 QATGSE 519

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	573
2xut_A	524	Proton/peptide symporter family protein; transport	1e-140
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	1e-28
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-04

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} Length = 524

 Score =  415 bits (1069), Expect = e-140
 Identities = 120/548 (21%), Positives = 206/548 (37%), Gaps = 58/548 (10%)

Query: 34  AAGLILGTELSERICAMGISMNLVTYLVGDLHLS------SAKSATIVTNFMGTLNLLGL 87
               I+ +E  ER    G+   L  +L+  L LS       A +  +  +F+  +    L
Sbjct: 13  QIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPL 72

Query: 88  LGGFLADAKLGRYLTVAIFASVTALVVGLLTSATSIPSMRPPQCDDYRRKHHQCIEANGK 147
           LGG++AD   G+Y T+   + +    VG    A                           
Sbjct: 73  LGGWIADRFFGKYNTILWLSLI--YCVGHAFLAIF-----------------------EH 107

Query: 148 QLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKAMIFFFNRFYFAISIGSLFA 207
            +   Y  L+ IALG GGIK  VS F  DQFD S+    +     F+ FYF I+ GS FA
Sbjct: 108 SVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQK---AFDMFYFTINFGSFFA 164

Query: 208 VIVLVYVQDNVGRGWGYGISAGTMVVAAAILLIGTPWYRFKKPRGSPLTVIWRVLLLAWK 267
            + +  +  N G    +GI    M VA     +G   Y    P          V+  A  
Sbjct: 165 SLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPPEPKDPHGFLPVIRSALL 224

Query: 268 KRSHPYPDHPSLL-------NEYQNAKVPHTEKFKCLDKAAII---EDNAVANENKNNSW 317
            +     +   +L         Y    +P       L  A ++      A A+     + 
Sbjct: 225 TKVEGKGNIGLVLALIGGVSAAYALVNIPTLGIVAGLCCAMVLVMGFVGAGASLQLERAR 284

Query: 318 IVSTVTEVEEVKMVLKLLPIWATCILFWTVYSQMTTFTVEQATFMNRKIGSFTVPSGSLS 377
                  V+ V+ VL++L ++A    FW+++ Q  +  + QA  M   +         + 
Sbjct: 285 KSHPDAAVDGVRSVLRILVLFALVTPFWSLFDQKASTWILQANDM---VKPQWFEPAMMQ 341

Query: 378 AFLFITILLFTSLNEKVFVPLARKITHSIQGMTSLQRVGTGLIFSVIAMIVSAVIEQQRR 437
           A   + ++L    N  V  P   ++      +T+L+++G G+  + ++ IV   I+    
Sbjct: 342 ALNPLLVMLLIPFNNFVLYPAIERMGV---KLTALRKMGAGIAITGLSWIVVGTIQLMMD 398

Query: 438 ETSVQKHIQISAFWLVPQYFLVGAGEAFVYVGQLEFFIREGPERMKSMSTGLFLSAISMG 497
             S      +S FW +  Y L+  GE  V    LEF   + P+ MK      +  ++++G
Sbjct: 399 GGS-----ALSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVG 453

Query: 498 MFVSSMLVSIVDKITNKH-WLRSNLNKGKLNNFYWLLAVLGLLNFMVFLFFAMKHQYNVQ 556
                +    V   T     +++ ++        +  A   +L  +VF  +A  +Q    
Sbjct: 454 NLWVLLANVSVKSPTVTEQIVQTGMSVTAF--QMFFFAGFAILAAIVFALYARSYQMQDH 511

Query: 557 HRVKGDKE 564
           +R     E
Sbjct: 512 YRQATGSE 519

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} Length = 491

 Score =  118 bits (297), Expect = 1e-28
 Identities = 90/550 (16%), Positives = 187/550 (34%), Gaps = 95/550 (17%)

Query: 36  GLILGTELSERICAMGISMNLVTYLV-----GDLHLSSAKSATIVTNFMGTLNLLGLLGG 90
             +  TE+ ER    G+   L+ Y+      GDLH++ A +A+I+  +   + L G +GG
Sbjct: 16  STLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGG 75

Query: 91  FLADAKLGRYLTVAIFASVTALVVGLLTSATSIPSMRPPQCDDYRRKHHQCIEANGKQLA 150
           F+AD  +G    V     +  +++G +  A                             +
Sbjct: 76  FVADRIIGARPAVFWGGVL--IMLGHIVLALPF------------------------GAS 109

Query: 151 MLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKAMIFFFNRFYFAISIGSLFAVIV 210
            L+ ++  I +G G +K NVS      +D  D + +      F+ F F I++G+  A ++
Sbjct: 110 ALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAG----FSIFVFGINLGAFIAPLI 165

Query: 211 LVYVQDNVGRGWGYGISAGTMVVAAAILLIGTPWY-------------RFKKPRGSPLTV 257
           +   Q+  G    + ++A  M +   +   G                   +         
Sbjct: 166 VGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVKVS 225

Query: 258 IWRVLLLAWKKRSHPYPDHPSLLNEYQNAKVPHTEKFKCLDKAAIIEDNAVANENKNNSW 317
           +     +A          +    N         T     +                    
Sbjct: 226 LAVAGFIAI-----IVVMNLVGWNSLPAYINLLTIVAIAIPVFYFA------------WM 268

Query: 318 IVSTVTEVEEVKMVLKLLPIWATCILFWTVYSQM-TTFTVEQATFMNRKIGSFTVPSGSL 376
           I S      E   V+  +P++   +LFW +  Q           F   ++ S   P    
Sbjct: 269 ISSVKVTSTEHLRVVSYIPLFIAAVLFWAIEEQGSVVLAT----FAAERVDSSWFPVSWF 324

Query: 377 SAFLFITILLFTSLNEKVFVPLARKITHSIQGMTSLQRVGTGLIFSVIAMIVSAVIEQQR 436
            +   + I+L+T     ++    +         +S  +   GL+F+ ++ ++ A+     
Sbjct: 325 QSLNPLFIMLYTPFFAWLWTAWKKN------QPSSPTKFAVGLMFAGLSFLLMAIPGAL- 377

Query: 437 RETSVQKHIQISAFWLVPQYFLVGAGEAFVYVGQLEFFIREGPERMKSMSTGLFLSAISM 496
                    ++S  WLV  + LV  GE  +    L    +  P+   S    ++  + S+
Sbjct: 378 ----YGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSV 433

Query: 497 GMFVSSMLVSIVDKITNKHWLRSNLNKGKLNNFYWLLAVLGLLNFMVFLFFAMKHQYNVQ 556
           G  +++ LV++ +  +                ++    +  ++   + L F  K    + 
Sbjct: 434 GSALNAQLVTLYNAKSE-------------VAYFSYFGLGSVV-LGIVLVFLSKRIQGLM 479

Query: 557 HRVKGDKELE 566
             V+G + L 
Sbjct: 480 QGVEGSENLY 489

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.7 bits (102), Expect = 1e-04
 Identities = 78/577 (13%), Positives = 149/577 (25%), Gaps = 193/577 (33%)

Query: 38  ILGTELSERICAMGISMNLVTYLVGDLHLSSAKSATIVTNFMGTLNLLGLLGGFLADAKL 97
           IL  E  + I     +++    L   L    +K   +V  F+  +  L +   FL     
Sbjct: 45  ILSKEEIDHIIMSKDAVSGTLRLFWTL---LSKQEEMVQKFVEEV--LRINYKFLMSP-- 97

Query: 98  GRYLTVAIFASVTALVVGLLTSATSIPSMRPPQCDDYR----------RKHHQCIEANGK 147
                              + +    PSM      + R           K++       +
Sbjct: 98  -------------------IKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRL---Q 135

Query: 148 QLAMLYAALYT------IAL-GGGGI-KSNVSGFGSDQFDT-SDPKEEKAMIFFFNRFYF 198
               L  AL        + + G  G  K+ V+       D     K +        +  F
Sbjct: 136 PYLKLRQALLELRPAKNVLIDGVLGSGKTWVAL------DVCLSYKVQC-------KMDF 182

Query: 199 AISIGSLFAVIVLVYVQDNVGRGWGYGISAGTMVVAAAILLIGTPWYRFKKPRGSPLTVI 258
            I     F               W   ++         +L +              L  +
Sbjct: 183 KI-----F---------------W---LNLKNCNSPETVLEM--------------LQKL 205

Query: 259 WRVLLLAWKKRSHPYPDHPSLLNEYQNAK---VPHTEKFKCLDKAAIIEDNAVANENKNN 315
              +   W  RS    +    ++  Q      +       CL    ++  N V      N
Sbjct: 206 LYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL----LVLLN-V-----QN 255

Query: 316 SWIVSTVTEVEEVKMVLKLLPIWATC-ILFWTVYSQMTTFTVEQAT---FMNRKIGSFTV 371
           +   +       +            C IL  T + Q+T F     T    ++    + T 
Sbjct: 256 AKAWNAF----NLS-----------CKILLTTRFKQVTDFLSAATTTHISLDHHSMTLT- 299

Query: 372 PSGSLSAFLFITILLFTSLNEKVFVPLARKITHSIQGMTSLQRVGTGLIFSVIAMIVSAV 431
           P    S                      + +    Q    L R         +++I  ++
Sbjct: 300 PDEVKSLL-------------------LKYLDCRPQ---DLPREVLTTNPRRLSIIAESI 337

Query: 432 IE--------QQRRETSVQKHIQISAFWLVP----QYFLVGAGEAFVYVGQLEFFIREGP 479
            +        +      +   I+ S   L P    + F            +L  F    P
Sbjct: 338 RDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFD-----------RLSVF----P 382

Query: 480 ERMKSMSTGLFLSAISMGMFVSSMLVSIVDKITNKHWLRSNLNKGKLNNFYWLLAVLGLL 539
                      +  I + +    ++ S V  + NK    S + K    +   + ++   L
Sbjct: 383 PSAH-------IPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLEL 435

Query: 540 NFMVFLFFAMKH-----QYNVQHRVKGDKELENFNDG 571
              +   +A+ H      YN+      D  +  + D 
Sbjct: 436 KVKLENEYAL-HRSIVDHYNIPKTFDSDDLIPPYLDQ 471

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.9 bits (100), Expect = 3e-04
 Identities = 40/208 (19%), Positives = 73/208 (35%), Gaps = 62/208 (29%)

Query: 271 HPYPDHPSLLNEYQNAKVPHTEKFKCLDKAAIIEDNAVANENKNNSWIVSTVTEVEEVKM 330
           + Y D   +L+ +++A V   + F C D    ++D       K+   I+S     EE+  
Sbjct: 16  YQYKD---ILSVFEDAFV---DNFDCKD----VQD-----MPKS---ILSK----EEIDH 53

Query: 331 VLKLL-PIWATCILFWTVYSQMTTFTVEQA---------TFMNRKIGSFTV-PSGSLSAF 379
           ++     +  T  LFWT+ S+     V++           F+   I +    PS     +
Sbjct: 54  IIMSKDAVSGTLRLFWTLLSKQEE-MVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMY 112

Query: 380 ------LFITILLFTSLNEKVFVPLARKITHSIQGMTSLQR---------VGTGLIFSVI 424
                 L+    +F     K  V   +      Q +  L+          +G+G   + +
Sbjct: 113 IEQRDRLYNDNQVFA----KYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGK--TWV 166

Query: 425 AMIVSAVIEQQRRETSVQKHIQISAFWL 452
           A+ V            VQ  +    FWL
Sbjct: 167 ALDVC-------LSYKVQCKMDFKIFWL 187

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	573
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	100.0
2xut_A	524	Proton/peptide symporter family protein; transport	99.97
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.96
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.96
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.95
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.92
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.89
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.46
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.37
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.34
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.17
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.03
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	98.89
2xut_A	524	Proton/peptide symporter family protein; transport	98.24

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=100.00  E-value=2e-31  Score=286.76  Aligned_cols=444  Identities=20%  Similarity=0.262  Sum_probs=297.0

Q ss_pred             CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-----cCCCchhhhHHHHHHHHHHHHHHhHHHHHhhh-ccchhHH
Q 008231           29 TGGWLAAGLILGTELSERICAMGISMNLVTYLVGD-----LHLSSAKSATIVTNFMGTLNLLGLLGGFLADA-KLGRYLT  102 (573)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~-----~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr-~~Grr~~  102 (573)
                      +++++..+.+....+++.+++|++.++++.|++++     +|++..+.+++.+.+.++..++++++|+++|| + |||++
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~-g~r~~   87 (491)
T 4aps_A            9 FGQPLGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRII-GARPA   87 (491)
T ss_dssp             --CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-CHHHH
T ss_pred             hccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cchHH
Confidence            44567889999999999999999999999999988     99999999999999999999999999999999 8 99999


Q ss_pred             HHHHHHHHHHHHHHHHhhccCCCCCCCCCccccccccccccchhhHHHHHHHHHHHHHhcCccccccccccccCCCCCCC
Q 008231          103 VAIFASVTALVVGLLTSATSIPSMRPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSD  182 (573)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~  182 (573)
                      +.++.++.+++.++++++.                          +.+.++++|++.|++.+...+...++++|++|+++
T Consensus        88 ~~~~~~~~~~~~~~~~~~~--------------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~  141 (491)
T 4aps_A           88 VFWGGVLIMLGHIVLALPF--------------------------GASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHD  141 (491)
T ss_dssp             HHHHHHHHHHHHHHHHSCC--------------------------STTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCT
T ss_pred             HHHHHHHHHHHHHHHHHhh--------------------------hHHHHHHHHHHHHHHHHhccchHHHHHHHHcCccc
Confidence            9999999999999998864                          44588999999999999999999999999999877


Q ss_pred             chHHHhHHHHHHHHHHHHHhhhHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHHHHhcCcccccc---CCCC-CchhHH
Q 008231          183 PKEEKAMIFFFNRFYFAISIGSLFAVIVLVYVQDNVGRGWGYGISAGTMVVAAAILLIGTPWYRFK---KPRG-SPLTVI  258 (573)
Q Consensus       183 ~~~~~~r~~~~~~~~~~~~ig~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~~  258 (573)
                      .+    |+.++++++.+.++|..++|.+++++.+..||+++|++.++..+++.+.+.+..++..++   +++. ....+.
T Consensus       142 ~~----r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (491)
T 4aps_A          142 RR----RDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEV  217 (491)
T ss_dssp             TH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHH
T ss_pred             cc----ceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCcccccccccCCCCccccchh
Confidence            43    777888899999999999999999999999999999988776666655544333322111   1111 111111


Q ss_pred             HHHHH--------------HHHhccCCCCCCCCCcchhcccccCCCCCccchhhhhhh-hhhhhhhccccCCcccccchh
Q 008231          259 WRVLL--------------LAWKKRSHPYPDHPSLLNEYQNAKVPHTEKFKCLDKAAI-IEDNAVANENKNNSWIVSTVT  323 (573)
Q Consensus       259 ~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  323 (573)
                      .+...              .....+..                 +.++.......... .......     ..|+... .
T Consensus       218 ~~~~~~~g~~l~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~-~  274 (491)
T 4aps_A          218 KPLLVKVSLAVAGFIAIIVVMNLVGWN-----------------SLPAYINLLTIVAIAIPVFYFA-----WMISSVK-V  274 (491)
T ss_dssp             HHHHHHCCCCCHHHHHHHHHHHHHSSC-----------------CTTHHHHHHHHHHHHHHHHHHH-----HHC------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccCc-----------------ccccchhhhhHHHHHHHHHHHH-----HHhhccc-c
Confidence            11000              00000000                 00000000000000 0000000     0010000 0


Q ss_pred             hHHHHHHHHhHHHHHHHHHHHHHHhhcccchhhhhhhc-cccccccceecccccchhhHHHHHHHHHhhhhhhhhhhccc
Q 008231          324 EVEEVKMVLKLLPIWATCILFWTVYSQMTTFTVEQATF-MNRKIGSFTVPSGSLSAFLFITILLFTSLNEKVFVPLARKI  402 (573)
Q Consensus       324 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~r~  402 (573)
                      ...++++......+++....++..+.+....+.....+ ...+    ..+.+.+.....+..++..++.+++.+|+.||.
T Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~  350 (491)
T 4aps_A          275 TSTEHLRVVSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSS----WFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQ  350 (491)
T ss_dssp             -------CTTHHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCS----SSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC-
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccC----ccCHHHHhccchHHHHHHHHHHHHHHHHHhccC
Confidence            01122333333445555555566666555543332211 1111    134666777888888888889999888776663


Q ss_pred             ccccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCcccchhHHHHHHHHHHHHHHhhhhhhhheeecccCchh
Q 008231          403 THSIQGMTSLQRVGTGLIFSVIAMIVSAVIEQQRRETSVQKHIQISAFWLVPQYFLVGAGEAFVYVGQLEFFIREGPERM  482 (573)
Q Consensus       403 ~~~~~~~~~~~~~~~g~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~lv~~~~l~g~~~~~~~~~~~~~~~~~~p~~~  482 (573)
                            ......+..+.++.+++++++........     ...+.+.+++++.+++.+++.+...+..++++.|..|++.
T Consensus       351 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~  419 (491)
T 4aps_A          351 ------PSSPTKFAVGLMFAGLSFLLMAIPGALYG-----TSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAF  419 (491)
T ss_dssp             --------CHHHHHHHHHHHHHHHTTTHHHHHHCC-----CCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTC
T ss_pred             ------CCchHHHHHHHHHHHHHHHHHHHHHHhcC-----CCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHH
Confidence                  23445577888888888777666432100     1223456677788899999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCccccccccchhhHHHHHHHHHHHHHHHHHHHHHhhcchh
Q 008231          483 KSMSTGLFLSAISMGMFVSSMLVSIVDKITNKHWLRSNLNKGKLNNFYWLLAVLGLLNFMVFLFFAMKHQYN  554 (573)
Q Consensus       483 rg~~~gi~~~~~~lg~~ig~~~~~~i~~~~~~~w~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~  554 (573)
                      ||+++|+.++...+|+.+++.+.+++.+.             .....|++++++++++.++.+++.++.+++
T Consensus       420 ~g~~~g~~~~~~~~g~~i~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  478 (491)
T 4aps_A          420 NSQMMSMWFLSSSVGSALNAQLVTLYNAK-------------SEVAYFSYFGLGSVVLGIVLVFLSKRIQGL  478 (491)
T ss_dssp             SSSSTHHHHHHHHHHHHHHHHHGGGGGGS-------------STTHHHHHTHHHHHHHHHHHHHC-------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcc-------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999998776542             133567777777777777666665554433

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=99.97  E-value=3.9e-31  Score=286.97  Aligned_cols=478  Identities=23%  Similarity=0.347  Sum_probs=284.8

Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC------CCchhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHH
Q 008231           31 GWLAAGLILGTELSERICAMGISMNLVTYLVGDLH------LSSAKSATIVTNFMGTLNLLGLLGGFLADAKLGRYLTVA  104 (573)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~------~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~  104 (573)
                      +++.++.+....++..+++|++.++++.|+++++|      ++..+.+++.+.+.++..++.+++|+++||++|||+++.
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~   89 (524)
T 2xut_A           10 WPRQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTIL   89 (524)
T ss_dssp             ---CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHH
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHH
Confidence            34566778889999999999999999999999999      999999999999999999999999999999559999999


Q ss_pred             HHHHHHHHHHHHHHhhccCCCCCCCCCccccccccccccchhhHHHHHHHHHHHHHhcCccccccccccccCCCCCCCch
Q 008231          105 IFASVTALVVGLLTSATSIPSMRPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPK  184 (573)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~~  184 (573)
                      ++.++.+++.++++++.                         .+.+.++++|++.|++.+...+...++++|++|+++  
T Consensus        90 ~~~~~~~~~~~~~~~~~-------------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~--  142 (524)
T 2xut_A           90 WLSLIYCVGHAFLAIFE-------------------------HSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSN--  142 (524)
T ss_dssp             HHHHHHHHHHHHHHHTS-------------------------SCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTT--
T ss_pred             HHHHHHHHHHHHHHHhc-------------------------ccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccc--
Confidence            99999999998888763                         156788999999999999999999999999999888  


Q ss_pred             HHHhHHH---HHHHHHHHHHhhhHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHHHHhcCccccccCCCCCchhHHHHH
Q 008231          185 EEKAMIF---FFNRFYFAISIGSLFAVIVLVYVQDNVGRGWGYGISAGTMVVAAAILLIGTPWYRFKKPRGSPLTVIWRV  261 (573)
Q Consensus       185 ~~~~r~~---~~~~~~~~~~ig~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (573)
                          |++   .+++++.+.++|..++|.+++++.+..||+++|++.++..+++.+.+++..++.+++++++++.....+.
T Consensus       143 ----r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (524)
T 2xut_A          143 ----KSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPPEPKDPHGFLPV  218 (524)
T ss_dssp             ----TTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHHSSSSSCCCCC------------
T ss_pred             ----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCccchhHHHH
Confidence                754   4555999999999999999999998899999999888776666555544444332222221111111111


Q ss_pred             HHHHHhccCCCCCCCCCcchhccc-----ccCCCCCccchhhhhhhhhhhhhhccccCCccc-------ccchhhHHHHH
Q 008231          262 LLLAWKKRSHPYPDHPSLLNEYQN-----AKVPHTEKFKCLDKAAIIEDNAVANENKNNSWI-------VSTVTEVEEVK  329 (573)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~  329 (573)
                      +....++++.+. +..........     ......+........... .....+.+...+|.       ........+++
T Consensus       219 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (524)
T 2xut_A          219 IRSALLTKVEGK-GNIGLVLALIGGVSAAYALVNIPTLGIVAGLCCA-MVLVMGFVGAGASLQLERARKSHPDAAVDGVR  296 (524)
T ss_dssp             --------CTTH-HHHHHHHHHHHHHHHHHTGGGTTTTCSSHHHHHH-HHHHHHHHHTGGGTHHHHSCCSCCSSSSTTTT
T ss_pred             HHHHHhhhhccc-Cccchhhhhhhhhhhhhhhcccchhhhhhhhhhh-hhhhhcccccchhhHHhhhhccccHhHHHHHH
Confidence            000111000000 00000000000     000000000000000000 00000000111220       00001112233


Q ss_pred             HHHhHHHHHHHHHHHHHHhhcccchhhhhhhccccccccceecccccchhhHHHHHHHHHhhhhhhhhhhcccccccCCC
Q 008231          330 MVLKLLPIWATCILFWTVYSQMTTFTVEQATFMNRKIGSFTVPSGSLSAFLFITILLFTSLNEKVFVPLARKITHSIQGM  409 (573)
Q Consensus       330 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~r~~~~~~~~  409 (573)
                      +.+.....+.....++..+.+..+.+..+....+...  + .+.+.+...+.+..++..++.+++..+..+|+.++   .
T Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~  370 (524)
T 2xut_A          297 SVLRILVLFALVTPFWSLFDQKASTWILQANDMVKPQ--W-FEPAMMQALNPLLVMLLIPFNNFVLYPAIERMGVK---L  370 (524)
T ss_dssp             THHHHHHHHTTSHHHHTTTSSTTTHHHHHHHHSCCCS--S-SCHHHHHTTSGGGHHHHGGGTTTC---------------
T ss_pred             HHHHHHHHHHHHHHHHHHHhccchhhHHhHHhcCCCe--e-ecHHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCC---C
Confidence            3333334444444455555555554444333332211  0 23444555666666677777777653333443211   2


Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCcccchhHHHHHHHHHHHHHHhhhhhhhheeecccCchhHHHHHHH
Q 008231          410 TSLQRVGTGLIFSVIAMIVSAVIEQQRRETSVQKHIQISAFWLVPQYFLVGAGEAFVYVGQLEFFIREGPERMKSMSTGL  489 (573)
Q Consensus       410 ~~~~~~~~g~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~lv~~~~l~g~~~~~~~~~~~~~~~~~~p~~~rg~~~gi  489 (573)
                      +..+.+..|.++.+++++++........     .....+.+++++.+++.+++++...+..++++.+.+|++.||+++|+
T Consensus       371 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~  445 (524)
T 2xut_A          371 TALRKMGAGIAITGLSWIVVGTIQLMMD-----GGSALSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAMKGTIMSF  445 (524)
T ss_dssp             CCHHHHHTHHHHHHHHHHTTTTTTTTTT-----TTCCCCSHHHHHHHHHHHHHHHHHHHHHTTTHHHHCCTTCCTTTHHH
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHhc-----CCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHhHHHHH
Confidence            3445567788877777766554310000     01123566777888999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhccCcccc-ccccchhhHHHHHHHHHHHHHHHHHHHHHhhcchh
Q 008231          490 FLSAISMGMFVSSMLVSIVDKITNKHWLRS-NLNKGKLNNFYWLLAVLGLLNFMVFLFFAMKHQYN  554 (573)
Q Consensus       490 ~~~~~~lg~~ig~~~~~~i~~~~~~~w~~~-~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~  554 (573)
                      +++...+|+.+++.+.+.+.+.++.+|.++ ..+  .....|++.++++++++++++++.++.+++
T Consensus       446 ~~~~~~~g~~~g~~~~g~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  509 (524)
T 2xut_A          446 WTLSVTVGNLWVLLANVSVKSPTVTEQIVQTGMS--VTAFQMFFFAGFAILAAIVFALYARSYQMQ  509 (524)
T ss_dssp             HGGGHHHHHHHHHHHHHHTTSCHHHHHHHHHHSC--HHHHHHHHHHHHHHHHHHHHC---------
T ss_pred             HHHHHHHHHHHHHHHHHHhccccccccccccccc--ccccHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            999999999999999998875432234221 011  112237777888888777776666655444

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.96  E-value=3.6e-28  Score=257.86  Aligned_cols=400  Identities=9%  Similarity=-0.029  Sum_probs=260.5

Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHH
Q 008231           31 GWLAAGLILGTELSERICAMGISMNLVTYLVGDLHLSSAKSATIVTNFMGTLNLLGLLGGFLADAKLGRYLTVAIFASVT  110 (573)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~  110 (573)
                      +++.++.+.+..+...+..+.+.+.++ ++.+++ .+..+.+++.+++.++..++.+++|+++||+ |||+++.++.++.
T Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-g~r~~l~~~~~~~  102 (451)
T 1pw4_A           26 RWQIFLGIFFGYAAYYLVRKNFALAMP-YLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILA  102 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTSHHHHHH-HTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhc-CchHHHHHHHHHH
Confidence            455667777777777777766666655 455577 9999999999999999999999999999998 9999999999999


Q ss_pred             HHHHHHHHh----hccCCCCCCCCCccccccccccccchhhHHHHHHHHHHHHHhcCccccccccccccCCCCCCCchHH
Q 008231          111 ALVVGLLTS----ATSIPSMRPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEE  186 (573)
Q Consensus       111 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~~~~  186 (573)
                      +++.+++++    +.                          +++.++++|++.|++.+...+...++++|++|+++    
T Consensus       103 ~~~~~~~~~~~~~~~--------------------------~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~----  152 (451)
T 1pw4_A          103 AAVMLFMGFVPWATS--------------------------SIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKE----  152 (451)
T ss_dssp             HHHHHHHHHCHHHHS--------------------------SSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTH----
T ss_pred             HHHHHHHHhhhhccc--------------------------cHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchh----
Confidence            999999988    64                          44588999999999999999999999999999888    


Q ss_pred             HhHHHHHHHHHHHHHhhhHHHHHHhhhhhcccc-hhHHHHHHHHHHHHHHHHHHhcCccccccCCCCCchhHHHHHHHHH
Q 008231          187 KAMIFFFNRFYFAISIGSLFAVIVLVYVQDNVG-RGWGYGISAGTMVVAAAILLIGTPWYRFKKPRGSPLTVIWRVLLLA  265 (573)
Q Consensus       187 ~~r~~~~~~~~~~~~ig~~~~~~~~~~l~~~~g-~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (573)
                        |++++++.+.+.++|..++|.+++++.+..| ||++|++.++..++..+..++..|+.+......+.           
T Consensus       153 --r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------  219 (451)
T 1pw4_A          153 --RGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPI-----------  219 (451)
T ss_dssp             --HHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSC-----------
T ss_pred             --hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCCh-----------
Confidence              9999999999999999999999999888888 99999988877666555444444432221110000           


Q ss_pred             HhccCCCCCCCCCcchhcccccCCCCCccchhhhhhhhhhhhhhccccCCcccccchhhHHHHHHHH-hHHHHHHHHHHH
Q 008231          266 WKKRSHPYPDHPSLLNEYQNAKVPHTEKFKCLDKAAIIEDNAVANENKNNSWIVSTVTEVEEVKMVL-KLLPIWATCILF  344 (573)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~  344 (573)
                              .+..+. ..  .+. +..+                   ++...++........+.+.+. ..+..++.....
T Consensus       220 --------~~~~~~-~~--~~~-~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (451)
T 1pw4_A          220 --------EEYKND-YP--DDY-NEKA-------------------EQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLR  268 (451)
T ss_dssp             --------TTTCCC------------------------------------CCTHHHHHHTSSCHHHHHHHHHHHHHHHHH
T ss_pred             --------hhhccc-cc--ccc-hhhh-------------------hcccccccchHHHHHcCHHHHHHHHHHHHHHHHH
Confidence                    000000 00  000 0000                   000000000000000111221 111122222222


Q ss_pred             HHHhhcccchhhhhhhccccccccceecccccchhhHHHHHHHHHhhhhhhhhh--hcccccccCCCchHHHHHHHHHHH
Q 008231          345 WTVYSQMTTFTVEQATFMNRKIGSFTVPSGSLSAFLFITILLFTSLNEKVFVPL--ARKITHSIQGMTSLQRVGTGLIFS  422 (573)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~--~~r~~~~~~~~~~~~~~~~g~~~~  422 (573)
                      +......+.++ .+..+.+      ....+.+.....++.++...+.+++.+|+  .+|.           .+..+..+.
T Consensus       269 ~~~~~~~~~~~-~~~~g~~------~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~-----------~~~~~~~~~  330 (451)
T 1pw4_A          269 YGILDWSPTYL-KEVKHFA------LDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRG-----------ATGVFFMTL  330 (451)
T ss_dssp             HHHHHHHHHHB-TTBSCCC------HHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHH-----------HHHHHHHHH
T ss_pred             HHHHHHHHHHH-HHhcCCC------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch-----------hHHHHHHHH
Confidence            22222222111 1111111      11234455566667777777778887665  3332           133343333


Q ss_pred             H-HHHHHHHHHHHHHHhhcccCCcccchhHHHHHHHHHHHHHHhhhhhhhheeecccCchhHHHHHHHHHHHHHH-HHHH
Q 008231          423 V-IAMIVSAVIEQQRRETSVQKHIQISAFWLVPQYFLVGAGEAFVYVGQLEFFIREGPERMKSMSTGLFLSAISM-GMFV  500 (573)
Q Consensus       423 ~-i~~i~~~~~~~~~~~~~~~~~~~~~~~~lv~~~~l~g~~~~~~~~~~~~~~~~~~p~~~rg~~~gi~~~~~~l-g~~i  500 (573)
                      . ++++++...            ...+.+......++.|++.....+..++++.+..|++.||++.|+.+....+ |+.+
T Consensus       331 ~~~~~~~~~~~------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~  398 (451)
T 1pw4_A          331 VTIATIVYWMN------------PAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVA  398 (451)
T ss_dssp             HHHHHHHTTSC------------CTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHh------------cccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHH
Confidence            3 444433321            1124455666677788887788888889999999999999999999999999 9999


Q ss_pred             HHHHHHHHhhhhccCccccccccchhhHHHHHHHHHHHHHHHHHHHHHh
Q 008231          501 SSMLVSIVDKITNKHWLRSNLNKGKLNNFYWLLAVLGLLNFMVFLFFAM  549 (573)
Q Consensus       501 g~~~~~~i~~~~~~~w~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~  549 (573)
                      ++.+.+++.+..            ++...|++.+++.+++.++.+...+
T Consensus       399 ~~~~~g~l~~~~------------g~~~~~~~~~~~~~~~~~~~~~~~~  435 (451)
T 1pw4_A          399 ASAIVGYTVDFF------------GWDGGFMVMIGGSILAVILLIVVMI  435 (451)
T ss_dssp             HHHHHHHHHHSS------------CSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhc------------CcHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999987642            1345677777777777666655544

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.96  E-value=2.6e-28  Score=262.32  Aligned_cols=420  Identities=13%  Similarity=0.009  Sum_probs=233.1

Q ss_pred             chhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCccccccccccccchhh
Q 008231           68 SAKSATIVTNFMGTLNLLGLLGGFLADAKLGRYLTVAIFASVTALVVGLLTSATSIPSMRPPQCDDYRRKHHQCIEANGK  147 (573)
Q Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (573)
                      ..+.+++.+.+.++..++++++|+++||+ |||+++.++.+++.++.++++++..........        ......-..
T Consensus        54 ~~~~g~~~s~~~~G~~iG~~~~G~laDr~-GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~--------~~~~~~~a~  124 (491)
T 4gc0_A           54 NSLLGFCVASALIGCIIGGALGGYCSNRF-GRRDSLKIAAVLFFISGVGSAWPELGFTSINPD--------NTVPVYLAG  124 (491)
T ss_dssp             HHHHHHHHHTHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSS--------SSCCGGGGG
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcch--------hHHHHHHhh
Confidence            45678899999999999999999999999 999999999999999999998642111000000        000000124


Q ss_pred             HHHHHHHHHHHHHhcCccccccccccccCCCCCCCchHHHhHHHHHHHHHHHHHhhhHHHHHHhhhhhcc--------cc
Q 008231          148 QLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKAMIFFFNRFYFAISIGSLFAVIVLVYVQDN--------VG  219 (573)
Q Consensus       148 ~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~~~~~l~~~--------~g  219 (573)
                      +.+.++++|+++|+|.|+..+..+.+++|..|++.      |++..++.+.+..+|..+++.++..+...        .+
T Consensus       125 ~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~------rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  198 (491)
T 4gc0_A          125 YVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHI------RGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDG  198 (491)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGG------HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHh------hhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchh
Confidence            78899999999999999999999999999999988      99999999999999999998887765432        34


Q ss_pred             hhHHHHHHHHHHHHHHHHHHhcCccccccCCCCCchhHHHHHHHHHHhccCCCCCCCCCcchhcccccCCCCCccchhhh
Q 008231          220 RGWGYGISAGTMVVAAAILLIGTPWYRFKKPRGSPLTVIWRVLLLAWKKRSHPYPDHPSLLNEYQNAKVPHTEKFKCLDK  299 (573)
Q Consensus       220 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (573)
                      |++.+.+..+..++..+. .+..|+.++....+...++..+.+.....+..                        ...+.
T Consensus       199 ~~~~~~~~~~~~~~~~~~-~~~~peSp~~L~~~~~~~~a~~~l~~~~~~~~------------------------~~~~~  253 (491)
T 4gc0_A          199 WRYMFASECIPALLFLML-LYTVPESPRWLMSRGKQEQAEGILRKIMGNTL------------------------ATQAV  253 (491)
T ss_dssp             HHHHHHTTHHHHHHHHHH-GGGSCCCHHHHHHTTCHHHHHHHHHHHHHHHH------------------------HHHHH
T ss_pred             hHHHhhhhhhhhhhhhhh-hhcCCCChHHHHHcCchhHHHHhHHHhcCCch------------------------hHHHH
Confidence            666665554443333222 23333322110001111111111100000000                        00000


Q ss_pred             hhhhhhhhhhccccCCcccccchhhHHHHHHHHhHHH-HHHHHHHHHHHhhcccchhhhhhhccccccccceecccccch
Q 008231          300 AAIIEDNAVANENKNNSWIVSTVTEVEEVKMVLKLLP-IWATCILFWTVYSQMTTFTVEQATFMNRKIGSFTVPSGSLSA  378 (573)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  378 (573)
                      .......  ..+++..     ........++...... .+............+.+.+..   .....    .........
T Consensus       254 ~~~~~~~--~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~----~~~~~~~~~  319 (491)
T 4gc0_A          254 QEIKHSL--DHGRKTG-----GRLLMFGVGVIVIGVMLSIFQQFVGINVVLYYAPEVFK---TLGAS----TDIALLQTI  319 (491)
T ss_dssp             HHHHHHH--HHHHHHT-----THHHHSCCTHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HSSCC----HHHHHHHHH
T ss_pred             HHHHHHH--Hhhhhhh-----hHHHHhcccHHHHHHHHHHHHHHhhhhHHHhcchHHHH---hcCCC----ccchhhHHH
Confidence            0000000  0000000     0000000111111100 000000000000000000110   00000    111122233


Q ss_pred             hhHHHHHHHHHhhhhhhhhhhcccccccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCcccchhHHHHHHHH
Q 008231          379 FLFITILLFTSLNEKVFVPLARKITHSIQGMTSLQRVGTGLIFSVIAMIVSAVIEQQRRETSVQKHIQISAFWLVPQYFL  458 (573)
Q Consensus       379 ~~~~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~lv~~~~l  458 (573)
                      ...+..++...+..++.||++||..           +..+...+.++++.+.....         ........++..+++
T Consensus       320 ~~~~~~~~~~~~~~~l~dr~Grr~~-----------~~~~~~~~~~~~~~l~~~~~---------~~~~~~~~~~~~~~~  379 (491)
T 4gc0_A          320 IVGVINLTFTVLAIMTVDKFGRKPL-----------QIIGALGMAIGMFSLGTAFY---------TQAPGIVALLSMLFY  379 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCSHHH-----------HHHHHHHHHHHHHHHHHHHH---------TTCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhhcCcch-----------hccchHHHHHHHHHHHHHHh---------cccchHHHHHHHHHH
Confidence            4445555556666777777666632           55666666666665554321         111122222222222


Q ss_pred             HHHHHHhhhhhhhheeecccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCccccccccchhhHHHHHHHHHHH
Q 008231          459 VGAGEAFVYVGQLEFFIREGPERMKSMSTGLFLSAISMGMFVSSMLVSIVDKITNKHWLRSNLNKGKLNNFYWLLAVLGL  538 (573)
Q Consensus       459 ~g~~~~~~~~~~~~~~~~~~p~~~rg~~~gi~~~~~~lg~~ig~~~~~~i~~~~~~~w~~~~~~~~~~~~~~~~~a~~~~  538 (573)
                      .........|..+.+..|.+|.+.|++++|+.+..+.+++++++.+.+.+.+..   |...   ..+....|++++++++
T Consensus       380 ~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~---~~~~---~~~~~~~~~i~~~~~~  453 (491)
T 4gc0_A          380 VAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNS---WLVA---HFHNGFSYWIYGCMGV  453 (491)
T ss_dssp             HHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHH---HHHH---HHTTCHHHHHHHHHHH
T ss_pred             HHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHh---hhhhhHHHHHHHHHHH
Confidence            222223344777889999999999999999999999999999999988775421   1100   0112246788899999


Q ss_pred             HHHHHHHHHHhhcchhhhccccCcccccc
Q 008231          539 LNFMVFLFFAMKHQYNVQHRVKGDKELEN  567 (573)
Q Consensus       539 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  567 (573)
                      ++.++.+++.||+|+++.||.+...|.++
T Consensus       454 ~~~i~~~~~~PETkg~tLeei~~~f~~~~  482 (491)
T 4gc0_A          454 LAALFMWKFVPETKGKTLEELEALWEPET  482 (491)
T ss_dssp             HHHHHHHHHCCCCTTCCHHHHGGGTC---
T ss_pred             HHHHHHHheecCCCCCCHHHHHHHhCCCC
Confidence            99999999999999998887765554433

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.95  E-value=2.3e-26  Score=243.13  Aligned_cols=357  Identities=12%  Similarity=0.063  Sum_probs=238.6

Q ss_pred             CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHH
Q 008231           29 TGGWLAAGLILGTELSERICAMGISMNLVTYLVGDLHLSSAKSATIVTNFMGTLNLLGLLGGFLADAKLGRYLTVAIFAS  108 (573)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~  108 (573)
                      +++++.+..+....+...+......+. .+++.+++|+|..+.+++.+.+.++..++.+++|+++||+ |||+++.++.+
T Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~-g~r~~l~~~~~   99 (438)
T 3o7q_A           22 RSYIIPFALLCSLFFLWAVANNLNDIL-LPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKL-SYKAGIITGLF   99 (438)
T ss_dssp             CTTHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHS-CHHHHHHHHHH
T ss_pred             hHhHHHHHHHHHHHHHHHHHHHhHHHH-HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-cchHHHHHHHH
Confidence            345556666666666776666555444 4557889999999999999999999999999999999998 99999999999


Q ss_pred             HHHHHHHHH---HhhccCCCCCCCCCccccccccccccchhhHHHHHHHHHHHHHhcCccccccccccccCCCCCCCchH
Q 008231          109 VTALVVGLL---TSATSIPSMRPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKE  185 (573)
Q Consensus       109 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~~~  185 (573)
                      +.+++.+++   +++                          .+++.++++|++.|++.+...+...++++|++|+++   
T Consensus       100 ~~~~~~~~~~~~~~~--------------------------~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~---  150 (438)
T 3o7q_A          100 LYALGAALFWPAAEI--------------------------MNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESS---  150 (438)
T ss_dssp             HHHHHHHHHHHHHHT--------------------------TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTT---
T ss_pred             HHHHHHHHHHhcccc--------------------------ccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchh---
Confidence            999999888   554                          367899999999999999999999999999999998   


Q ss_pred             HHhHHHHHHHHHHHHHhhhHHHHHHhhhhh-cccc-------------------------hhHHHHHHHHHHHHHHHHHH
Q 008231          186 EKAMIFFFNRFYFAISIGSLFAVIVLVYVQ-DNVG-------------------------RGWGYGISAGTMVVAAAILL  239 (573)
Q Consensus       186 ~~~r~~~~~~~~~~~~ig~~~~~~~~~~l~-~~~g-------------------------~~~~f~~~~~~~~~~~~~~~  239 (573)
                         |++++++.+.+.++|..++|.+++++. +..+                         |+++|++.++..++..+.++
T Consensus       151 ---r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~  227 (438)
T 3o7q_A          151 ---GHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIM  227 (438)
T ss_dssp             ---HHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ---HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence               999999999999999999999999988 5554                         99999876665554444333


Q ss_pred             hc-CccccccCCCCCchhHHHHHHHHHHhccCCCCCCCCCcchhcccccCCCCCccchhhhhhhhhhhhhhccccCCccc
Q 008231          240 IG-TPWYRFKKPRGSPLTVIWRVLLLAWKKRSHPYPDHPSLLNEYQNAKVPHTEKFKCLDKAAIIEDNAVANENKNNSWI  318 (573)
Q Consensus       240 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (573)
                      +. .|+.++++++++                                      ++.+..+                 ++ 
T Consensus       228 ~~~~p~~~~~~~~~~--------------------------------------~~~~~~~-----------------~~-  251 (438)
T 3o7q_A          228 LTKFPALQSDNHSDA--------------------------------------KQGSFSA-----------------SL-  251 (438)
T ss_dssp             HCCCCCCTTTCCCCS--------------------------------------STTSHHH-----------------HH-
T ss_pred             HHcCCcccccccccc--------------------------------------cccchhh-----------------hH-
Confidence            32 121111000000                                      0000000                 00 


Q ss_pred             ccchhhHHHHHHHHhHHHHHHHHHHHHHHhhcccchhhhhhhccccccccceecccccchhhHHHHHHHHHhhhhhhhhh
Q 008231          319 VSTVTEVEEVKMVLKLLPIWATCILFWTVYSQMTTFTVEQATFMNRKIGSFTVPSGSLSAFLFITILLFTSLNEKVFVPL  398 (573)
Q Consensus       319 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  398 (573)
                         ....++++.....+..++............+.++..+..+.+      ....+.+.....++.++...+.+++.+|+
T Consensus       252 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~------~~~~~~~~~~~~~~~~~~~~~~g~l~~r~  322 (438)
T 3o7q_A          252 ---SRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMT------AGFAANYLTGTMVCFFIGRFTGTWLISRF  322 (438)
T ss_dssp             ---HHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCC------HHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             ---HHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcc------hhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence               000001111111112222222222222222222122111212      11234455555666667777777887665


Q ss_pred             hcccccccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCcccchhHHHHHHHHHHHHHHhhhhhhhheeeccc
Q 008231          399 ARKITHSIQGMTSLQRVGTGLIFSVIAMIVSAVIEQQRRETSVQKHIQISAFWLVPQYFLVGAGEAFVYVGQLEFFIREG  478 (573)
Q Consensus       399 ~~r~~~~~~~~~~~~~~~~g~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~lv~~~~l~g~~~~~~~~~~~~~~~~~~  478 (573)
                      .+|+           .+..+.++..+++++.....              .. +.+..+++.+++.+...|..+++..+..
T Consensus       323 ~~~~-----------~~~~~~~~~~~~~~~~~~~~--------------~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~  376 (438)
T 3o7q_A          323 APHK-----------VLAAYALIAMALCLISAFAG--------------GH-VGLIALTLCSAFMSIQYPTIFSLGIKNL  376 (438)
T ss_dssp             CHHH-----------HHHHHHHHHHHHHHHHHHCC--------------HH-HHHHHHHHHHHHHTTHHHHHHHHHHSSC
T ss_pred             cchH-----------HHHHHHHHHHHHHHHHHHcC--------------Cc-HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            5442           25566666666655544421              11 2334457778888888899999989999


Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 008231          479 PERMKSMSTGLFLSAISMGMFVSSMLVSIVDKIT  512 (573)
Q Consensus       479 p~~~rg~~~gi~~~~~~lg~~ig~~~~~~i~~~~  512 (573)
                      |++ ++.+.++.. ...+|+.+++.+.|++.+..
T Consensus       377 ~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~  408 (438)
T 3o7q_A          377 GQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAA  408 (438)
T ss_dssp             GGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHH
T ss_pred             ccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHh
Confidence            977 899988877 67799999999999988753

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.92  E-value=4.9e-25  Score=228.34  Aligned_cols=348  Identities=11%  Similarity=0.017  Sum_probs=233.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHH
Q 008231           36 GLILGTELSERICAMGISMNLVTYLVGDLHLSSAKSATIVTNFMGTLNLLGLLGGFLADAKLGRYLTVAIFASVTALVVG  115 (573)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~  115 (573)
                      +.++...++..++.....+.+|. +.+++|.|..+.+++.+.+.++..++.++.|+++||+ |||+++.++..+.+++..
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~   80 (375)
T 2gfp_A            3 LMLVLLVAVGQMAQTIYIPAIAD-MARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRV-GRRPVILVGMSIFMLATL   80 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH-HHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTS-CCCCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhhhHH-HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCchhHHHHHHHHHHHHH
Confidence            44566666777776666666655 5678999999999999999999999999999999998 999999999999999999


Q ss_pred             HHHhhccCCCCCCCCCccccccccccccchhhHHHHHHHHHHHHHhcCccccccccccccCCCCCCCchHHHhHHHHHHH
Q 008231          116 LLTSATSIPSMRPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKAMIFFFNR  195 (573)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  195 (573)
                      ++.++                          ++.+.+++.|++.|++.+...+...+++.|++|+++      |++++++
T Consensus        81 ~~~~~--------------------------~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~  128 (375)
T 2gfp_A           81 VAVTT--------------------------SSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQ------LRHANSL  128 (375)
T ss_dssp             HHHHH--------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS------CCSHHHH
T ss_pred             HHHHh--------------------------ccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHH------HHHHHHH
Confidence            98886                          377889999999999999999999999999999988      9999999


Q ss_pred             HHHHHHhhhHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHHHHhcCccccccCCCCCchhHHHHHHHHHHhccCCCCCC
Q 008231          196 FYFAISIGSLFAVIVLVYVQDNVGRGWGYGISAGTMVVAAAILLIGTPWYRFKKPRGSPLTVIWRVLLLAWKKRSHPYPD  275 (573)
Q Consensus       196 ~~~~~~ig~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (573)
                      .+.+.++|..++|.+++++.+..||++.|++.++..++..+...+..|+.++.++++                       
T Consensus       129 ~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------  185 (375)
T 2gfp_A          129 LNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTFSMARWMPETRPVDAPR-----------------------  185 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHCCCCCSSCCCSTTTCCC-----------------------
T ss_pred             HHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHCcccCCCCccc-----------------------
Confidence            999999999999999999999889999999877765554432222222211100000                       


Q ss_pred             CCCcchhcccccCCCCCccchhhhhhhhhhhhhhccccCCcccccchhhHHHHHHHHhHHHHHHHHHHHHHHhhcccchh
Q 008231          276 HPSLLNEYQNAKVPHTEKFKCLDKAAIIEDNAVANENKNNSWIVSTVTEVEEVKMVLKLLPIWATCILFWTVYSQMTTFT  355 (573)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  355 (573)
                                     +                    +...++   + ...++++.....+..++............+.+.
T Consensus       186 ---------------~--------------------~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (375)
T 2gfp_A          186 ---------------T--------------------RLLTSY---K-TLFGNSGFNCYLLMLIGGLAGIAAFEACSGVLM  226 (375)
T ss_dssp             ---------------C--------------------CTTTCS---T-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCSS
T ss_pred             ---------------c--------------------cHHHHH---H-HHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                           0                    000001   0 111122221122222222222222222222222


Q ss_pred             hhhhhccccccccceecccccchhhHHHHHHHHHhhhhhhhhhhcccccccCCCchHHHHHHHHHH-HHHHHHHHHHHHH
Q 008231          356 VEQATFMNRKIGSFTVPSGSLSAFLFITILLFTSLNEKVFVPLARKITHSIQGMTSLQRVGTGLIF-SVIAMIVSAVIEQ  434 (573)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~-~~i~~i~~~~~~~  434 (573)
                      .. ..+.+      ....+.+.....++.++..++.+++.+|..+             ++..+..+ ...+.........
T Consensus       227 ~~-~~g~~------~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~-------------~~~~~~~~~~~~~~~~~~~~~~  286 (375)
T 2gfp_A          227 GA-VLGLS------SMTVSILFILPIPAAFFGAWFAGRPNKRFST-------------LMWQSVICCLLAGLLMWIPDWF  286 (375)
T ss_dssp             HH-HHHHH------HHHHHHHHHTHHHHHHHHHHHHHTTTTHHHH-------------HHHHHHHHHHHTSSSSSHHHHH
T ss_pred             HH-HhCCC------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHhhh
Confidence            21 11111      1123344555556666666666666433221             13334333 2222221111100


Q ss_pred             HHHhhcccCCcccchhHHHHHHHHHHHHHHhhhhhhhheeecccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008231          435 QRRETSVQKHIQISAFWLVPQYFLVGAGEAFVYVGQLEFFIREGPERMKSMSTGLFLSAISMGMFVSSMLVSIVDK  510 (573)
Q Consensus       435 ~~~~~~~~~~~~~~~~~lv~~~~l~g~~~~~~~~~~~~~~~~~~p~~~rg~~~gi~~~~~~lg~~ig~~~~~~i~~  510 (573)
                                .+.+.+.++...++.+++.+...+...++..|..| +.||++.|+.+....+|..+++.+.+.+.+
T Consensus       287 ----------~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~  351 (375)
T 2gfp_A          287 ----------GVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQ  351 (375)
T ss_dssp             ----------HHHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHH
T ss_pred             ----------ccccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence                      01134445566788889999999999999999998 789999999999999999999998888764

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.89  E-value=3.2e-24  Score=226.06  Aligned_cols=390  Identities=12%  Similarity=0.009  Sum_probs=222.4

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHH
Q 008231           32 WLAAGLILGTELSERICAMGISMNLVTYLVGDLHLSSAKSATIVTNFMGTLNLLGLLGGFLADAKLGRYLTVAIFASVTA  111 (573)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~  111 (573)
                      .|..+.+....++...++..+.++++.|+++++|+|..+.+++.+.+.++..++++++|+++||+ |||++++++..+.+
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~-Grr~~l~~~~~~~~   84 (417)
T 2cfq_A            6 NTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKL-GLRKYLLWIITGML   84 (417)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTS-TTCCHHHHHHHHTT
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHH
Confidence            35666677766777777777788999999999999999999999999999999999999999998 99999998887765


Q ss_pred             HHHHHH---HhhccCCCCCCCCCccccccccccccchhhHH-HHHHHHHHHHHhcCccccccccccccCCCCCCCchHHH
Q 008231          112 LVVGLL---TSATSIPSMRPPQCDDYRRKHHQCIEANGKQL-AMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEK  187 (573)
Q Consensus       112 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~~~~~  187 (573)
                      ++...+   .++.                          .. ..++.++.+.+++.+...+...+...++.++..    .
T Consensus        85 ~~~~~~~~~~~~~--------------------------~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~----~  134 (417)
T 2cfq_A           85 VMFAPFFIFIFGP--------------------------LLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVS----R  134 (417)
T ss_dssp             SCHHHHHHHTHHH--------------------------HHHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHH----H
T ss_pred             HHHHHHHHHHHHH--------------------------HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhh----h
Confidence            432211   2210                          00 012344555555555544444444444433221    1


Q ss_pred             hHHHHHHHHHHHHHhhhHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHHHHhcCccccccCCCCCchhHHHHHHHHHHh
Q 008231          188 AMIFFFNRFYFAISIGSLFAVIVLVYVQDNVGRGWGYGISAGTMVVAAAILLIGTPWYRFKKPRGSPLTVIWRVLLLAWK  267 (573)
Q Consensus       188 ~r~~~~~~~~~~~~ig~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (573)
                      .++..++..+...++|..++|.+++++.+ .+|++.|++.++..++..+..++..|+.   ++..+              
T Consensus       135 ~~~~~~g~~~~~~~~g~~~~~~l~~~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~~---~~~~~--------------  196 (417)
T 2cfq_A          135 RSNFEFGRARMFGCVGWALGASIVGIMFT-INNQFVFWLGSGCALILAVLLFFAKTDA---PSSAT--------------  196 (417)
T ss_dssp             HHTCCHHHHSSSTTTHHHHHHHHHHHHHH-HCSHHHHTTTTTTTTTHHHHSCSSCCCC---SCSSC--------------
T ss_pred             hcccchHHHHHHHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHHHHHHHHHHHcCccc---ccccc--------------
Confidence            16767778777889999999999999886 6899998876554333322222211111   00000              


Q ss_pred             ccCCCCCCCCCcchhcccccCCCCCccchhhhhhhhhhhhhhccccCCcccccchhhHHHHHHHHhHHHH-HHHHHHHHH
Q 008231          268 KRSHPYPDHPSLLNEYQNAKVPHTEKFKCLDKAAIIEDNAVANENKNNSWIVSTVTEVEEVKMVLKLLPI-WATCILFWT  346 (573)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~  346 (573)
                           .++.         .. ...++.+..+                  +     ....+.+........ +.....++.
T Consensus       197 -----~~~~---------~~-~~~~~~~~~~------------------~-----~~~~~~~~~~~~~~~~~~~~~~~~~  238 (417)
T 2cfq_A          197 -----VANA---------VG-ANHSAFSLKL------------------A-----LELFRQPKLWFLSLYVIGVSCTYDV  238 (417)
T ss_dssp             -----SSSS---------SS-SCCCCCCHHH------------------H-----HHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             -----cccc---------cc-cccccccHHH------------------H-----HHHhcCCchhhHHHHHHHHHHHHHH
Confidence                 0000         00 0000000000                  0     000001111111111 111111222


Q ss_pred             HhhcccchhhhhhhccccccccceecccccchhhHHHHHHHHHhhhhhhhhhhcccccccCCCchHHHHHHHHHHHHHHH
Q 008231          347 VYSQMTTFTVEQATFMNRKIGSFTVPSGSLSAFLFITILLFTSLNEKVFVPLARKITHSIQGMTSLQRVGTGLIFSVIAM  426 (573)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~i~~  426 (573)
                      ..++.+.++...   ......+ ....+....++.+..++...+.+++.||+.+|+           .+..+.++.++++
T Consensus       239 ~~~~~~~~~~~~---~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~-----------~l~~~~~~~~~~~  303 (417)
T 2cfq_A          239 FDQQFANFFTSF---FATGEQG-TRVFGYVTTMGELLNASIMFFAPLIINRIGGKN-----------ALLLAGTIMSVRI  303 (417)
T ss_dssp             HHHHHHHHHHHT---SSSHHHH-THHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHH-----------HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH---HhccCCC-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHH-----------HHHHHHHHHHHHH
Confidence            212222222111   1100000 001123344444555566667777777665542           2455665655554


Q ss_pred             HHHHHHHHHHHhhcccCCcccchhHHHHHHHHHHHHHHhhhhhhhheeecccCchhHHHHHHH-HHHHHHHHHHHHHHHH
Q 008231          427 IVSAVIEQQRRETSVQKHIQISAFWLVPQYFLVGAGEAFVYVGQLEFFIREGPERMKSMSTGL-FLSAISMGMFVSSMLV  505 (573)
Q Consensus       427 i~~~~~~~~~~~~~~~~~~~~~~~~lv~~~~l~g~~~~~~~~~~~~~~~~~~p~~~rg~~~gi-~~~~~~lg~~ig~~~~  505 (573)
                      +.+...              .+.+.++...++.+++.....+..+.++.|..|++.||++.++ +++.+.+|+.++|.+.
T Consensus       304 ~~~~~~--------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~  369 (417)
T 2cfq_A          304 IGSSFA--------------TSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLA  369 (417)
T ss_dssp             HHHTTC--------------CSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHH
T ss_pred             HHHHHh--------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhH
Confidence            443321              1333444555566666666667778899999999999999999 4888899999999999


Q ss_pred             HHHhhhhccCccccccccchhhHHHHHHHHHHHHHHHHHHHHHh
Q 008231          506 SIVDKITNKHWLRSNLNKGKLNNFYWLLAVLGLLNFMVFLFFAM  549 (573)
Q Consensus       506 ~~i~~~~~~~w~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~  549 (573)
                      |++.+..            ++...|.+.++++++++++.+...+
T Consensus       370 G~l~~~~------------g~~~~f~~~~~~~l~~~~~~~~~~~  401 (417)
T 2cfq_A          370 GNMYESI------------GFQGAYLVLGLVALGFTLISVFTLS  401 (417)
T ss_dssp             HTHHHHS------------HHHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred             HHHHHhc------------CcHHHHHHHHHHHHHHHHHHHhhhc
Confidence            9876531            2345666777777776665544443

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.46  E-value=3.5e-13  Score=142.22  Aligned_cols=179  Identities=15%  Similarity=0.022  Sum_probs=149.8

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhHHHHHhhhc-cchhHHHHHHHHHH
Q 008231           32 WLAAGLILGTELSERICAMGISMNLVTYLVGDLHLSSAKSATIVTNFMGTLNLLGLLGGFLADAK-LGRYLTVAIFASVT  110 (573)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~-~Grr~~~~~~~~~~  110 (573)
                      .+.++.+++..++....++++..++|.|+++.+|++..+.+++.+.+.++..++.++.|+++||+ .|||+.+.++..+.
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~  330 (451)
T 1pw4_A          251 NKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTL  330 (451)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHH
Confidence            46778888888888889999999999999988999999999999999999999999999999994 27888888777666


Q ss_pred             H-HHHHHHHhhccCCCCCCCCCccccccccccccchhhHHHHHHHHHHHHHhcCccccccccccccCCCCCCCchHHHhH
Q 008231          111 A-LVVGLLTSATSIPSMRPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKAM  189 (573)
Q Consensus       111 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~r  189 (573)
                      . ++.+++.+..+                        .+.+.+.+..++.|++.+...+...+++.|.+|+++      |
T Consensus       331 ~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~  380 (451)
T 1pw4_A          331 VTIATIVYWMNPA------------------------GNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKA------A  380 (451)
T ss_dssp             HHHHHHHTTSCCT------------------------TCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTH------H
T ss_pred             HHHHHHHHHHhcc------------------------cCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhh------h
Confidence            5 55555554311                        145566677778888888888888899999999988      9


Q ss_pred             HHHHHHHHHHHHh-hhHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHHHHh
Q 008231          190 IFFFNRFYFAISI-GSLFAVIVLVYVQDNVGRGWGYGISAGTMVVAAAILLI  240 (573)
Q Consensus       190 ~~~~~~~~~~~~i-g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~  240 (573)
                      ++++++++...++ |..++|.+.|++.+..||+..|++.++..+++.+..++
T Consensus       381 g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~  432 (451)
T 1pw4_A          381 GTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIV  432 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999 99999999999999999999999887777666555444

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.37  E-value=4.9e-12  Score=132.87  Aligned_cols=167  Identities=13%  Similarity=-0.001  Sum_probs=135.9

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhcCCCchhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHH
Q 008231           32 WLAAGLILGTELSERICAMGISMNLVTY-LVGDLHLSSAKSATIVTNFMGTLNLLGLLGGFLADAKLGRYLTVAIFASVT  110 (573)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~~l~~y-l~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~  110 (573)
                      .+.++..++..++.....+++..+++.| +++.+|++..+.+++.+.+.++..++.+++|+++||+ |||+++.++..+.
T Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~~~~~~~~~  335 (438)
T 3o7q_A          257 IRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRF-APHKVLAAYALIA  335 (438)
T ss_dssp             CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHH
Confidence            3456777777777777888888999999 8888899999999999999999999999999999998 9999999999888


Q ss_pred             HHHHHHHHhhccCCCCCCCCCccccccccccccchhhHHHHHHHHHHHHHhcCccccccccccccCCCCCCCchHHHhHH
Q 008231          111 ALVVGLLTSATSIPSMRPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKAMI  190 (573)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~  190 (573)
                      +++.+++.+..                          +... ++..++.|++.+...+...++..|.+|++       ++
T Consensus       336 ~~~~~~~~~~~--------------------------~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-------~~  381 (438)
T 3o7q_A          336 MALCLISAFAG--------------------------GHVG-LIALTLCSAFMSIQYPTIFSLGIKNLGQD-------TK  381 (438)
T ss_dssp             HHHHHHHHHCC--------------------------HHHH-HHHHHHHHHHHTTHHHHHHHHHHSSCGGG-------HH
T ss_pred             HHHHHHHHHcC--------------------------CcHH-HHHHHHHHHHHHHHHHHHHHHHHhhcccc-------cc
Confidence            88887777652                          2223 33346788888888899999988988843       56


Q ss_pred             HHHHHHHHHHHhhhHHHHHHhhhhhcccc-hhHHHHHHHHHHHHH
Q 008231          191 FFFNRFYFAISIGSLFAVIVLVYVQDNVG-RGWGYGISAGTMVVA  234 (573)
Q Consensus       191 ~~~~~~~~~~~ig~~~~~~~~~~l~~~~g-~~~~f~~~~~~~~~~  234 (573)
                      .+.++.. ...+|..++|.+.|++.+..| ++..|++.++..++.
T Consensus       382 ~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~  425 (438)
T 3o7q_A          382 YGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVI  425 (438)
T ss_dssp             HHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHH
T ss_pred             chhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence            6666655 567999999999999999998 999988766554443

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.34  E-value=2.5e-12  Score=134.93  Aligned_cols=178  Identities=7%  Similarity=-0.042  Sum_probs=129.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC---CchhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHH
Q 008231           33 LAAGLILGTELSERICAMGISMNLVTYLVGDLHL---SSAKSATIVTNFMGTLNLLGLLGGFLADAKLGRYLTVAIFASV  109 (573)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~---s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~  109 (573)
                      +..+......+.....++.....+|.|+.+.++.   +..+.+...++..+...++.++.|+++||+ |||+++..+..+
T Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~l~~~~~~  298 (417)
T 2cfq_A          220 PKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRI-GGKNALLLAGTI  298 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CHHHHHHHHHHH
T ss_pred             CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-cHHHHHHHHHHH
Confidence            3444444444444445555556788888766653   234556777777778888999999999998 999999988888


Q ss_pred             HHHHHHHHHhhccCCCCCCCCCccccccccccccchhhHHHHHHHHHHHHHhcCccccccccccccCCCCCCCchHHHhH
Q 008231          110 TALVVGLLTSATSIPSMRPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKAM  189 (573)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~r  189 (573)
                      .+++..+.++..                          +.+.+++..++.+++.+...+....+++|.+|++.      |
T Consensus       299 ~~~~~~~~~~~~--------------------------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~------~  346 (417)
T 2cfq_A          299 MSVRIIGSSFAT--------------------------SALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRF------S  346 (417)
T ss_dssp             HHHHHHHHTTCC--------------------------SHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHH------H
T ss_pred             HHHHHHHHHHhc--------------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH------H
Confidence            777766665532                          33455556666676666666666789999999877      9


Q ss_pred             HHHHHH-HHHHHHhhhHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHHHHhcCc
Q 008231          190 IFFFNR-FYFAISIGSLFAVIVLVYVQDNVGRGWGYGISAGTMVVAAAILLIGTP  243 (573)
Q Consensus       190 ~~~~~~-~~~~~~ig~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~  243 (573)
                      +++.++ ++.+.++|+.++|.++|++.+..|++..|.+.++..+++.+..+...+
T Consensus       347 g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~  401 (417)
T 2cfq_A          347 ATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLS  401 (417)
T ss_dssp             HHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred             HHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhc
Confidence            999998 577888999999999999998889988888877776666655444333

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.17  E-value=5.7e-11  Score=126.93  Aligned_cols=186  Identities=10%  Similarity=-0.054  Sum_probs=136.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHH-----HHHH
Q 008231           34 AAGLILGTELSERICAMGISMNLVTYLVGDLHLSSAKSATIVTNFMGTLNLLGLLGGFLADAKLGRYLTVA-----IFAS  108 (573)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~-----~~~~  108 (573)
                      ..+.+....++....+......++.|+.+.++.+..+.+++.+...+...++.++.|++.||+ |||+...     ++..
T Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~-~~r~~~~~~~~~~~~~  362 (491)
T 4aps_A          284 SYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAW-KKNQPSSPTKFAVGLM  362 (491)
T ss_dssp             THHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHT-TTC---CHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHH-hccCCCchHHHHHHHH
Confidence            344555555666666777778889999998998888888888899999999999999999998 9886544     6666


Q ss_pred             HHHHHHHHHHhhccCCCCCCCCCccccccccccccchhhHHHHHHHHHHHHHhcCccccccccccccCCCCCCCchHHHh
Q 008231          109 VTALVVGLLTSATSIPSMRPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKA  188 (573)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (573)
                      +.+++..++.+.....                 ......+.+.+.+..++.|++.+...+...+++.|.+|++.      
T Consensus       363 ~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~------  419 (491)
T 4aps_A          363 FAGLSFLLMAIPGALY-----------------GTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAF------  419 (491)
T ss_dssp             HHHHHHTTTHHHHHHC-----------------CCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTC------
T ss_pred             HHHHHHHHHHHHHHhc-----------------CCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHH------
Confidence            6666665555431000                 00000134556677788899999988999999999999999      


Q ss_pred             HHHHHHHHHHHHHhhhHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHHHHhcCcc
Q 008231          189 MIFFFNRFYFAISIGSLFAVIVLVYVQDNVGRGWGYGISAGTMVVAAAILLIGTPW  244 (573)
Q Consensus       189 r~~~~~~~~~~~~ig~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~  244 (573)
                      |+++.++.+...++|..++|.+.+++.+ .++.+.|.+.++..+++.+..++..++
T Consensus       420 ~g~~~g~~~~~~~~g~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  474 (491)
T 4aps_A          420 NSQMMSMWFLSSSVGSALNAQLVTLYNA-KSEVAYFSYFGLGSVVLGIVLVFLSKR  474 (491)
T ss_dssp             SSSSTHHHHHHHHHHHHHHHHHGGGGGG-SSTTHHHHHTHHHHHHHHHHHHHC---
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999998875 467777777666666655555554443

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.03  E-value=8.1e-10  Score=117.84  Aligned_cols=166  Identities=16%  Similarity=-0.011  Sum_probs=117.2

Q ss_pred             HHHHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCcc
Q 008231           54 MNLVTYLVGDLHLSSAKSATIVTNFMGTLNLLGLLGGFLADAKLGRYLTVAIFASVTALVVGLLTSATSIPSMRPPQCDD  133 (573)
Q Consensus        54 ~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (573)
                      ....+++.+..+.+..+.........+...++.++++++.||+ |||+.++.+.....++.+.++......         
T Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~-Grr~~~~~~~~~~~~~~~~l~~~~~~~---------  366 (491)
T 4gc0_A          297 LYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKF-GRKPLQIIGALGMAIGMFSLGTAFYTQ---------  366 (491)
T ss_dssp             HHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CSHHHHHHHHHHHHHHHHHHHHHHHTT---------
T ss_pred             HhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhh-cCcchhccchHHHHHHHHHHHHHHhcc---------
Confidence            3344556667788888887777788888999999999999998 999999999888887776665432111         


Q ss_pred             ccccccccccchhhHHHHHHHHHHHHHhcCccccccccccccCCCCCCCchHHHhHHHHHHHHHHHHHhhhHHHHHHhhh
Q 008231          134 YRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKAMIFFFNRFYFAISIGSLFAVIVLVY  213 (573)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~~~~~  213 (573)
                                 .......+....+..+.+ ....+....+.+|.+|.+.      |+++.++.+....+|+.+++.+.+.
T Consensus       367 -----------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~E~fPt~~------R~~~~g~~~~~~~~~~~i~~~~~p~  428 (491)
T 4gc0_A          367 -----------APGIVALLSMLFYVAAFA-MSWGPVCWVLLSEIFPNAI------RGKALAIAVAAQWLANYFVSWTFPM  428 (491)
T ss_dssp             -----------CCHHHHHHHHHHHHHHHH-TTTTHHHHHHHHHSSCTTT------HHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred             -----------cchHHHHHHHHHHHHHHH-hHHHHHHHHHHHHhCCHhH------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                       001112222222222322 2334666789999999999      9999999999999999999888776


Q ss_pred             hhc------ccchhHHHHHHHHHHHHHHHHHHhcCccccc
Q 008231          214 VQD------NVGRGWGYGISAGTMVVAAAILLIGTPWYRF  247 (573)
Q Consensus       214 l~~------~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~  247 (573)
                      +.+      ..++.++|++.+++++++.++.++..||.+.
T Consensus       429 l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg  468 (491)
T 4gc0_A          429 MDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKG  468 (491)
T ss_dssp             HCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCTT
T ss_pred             HHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCCCC
Confidence            643      2345567787777777777776777776543

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=98.89  E-value=3.7e-10  Score=116.11  Aligned_cols=164  Identities=9%  Similarity=-0.132  Sum_probs=127.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHH-HH
Q 008231           33 LAAGLILGTELSERICAMGISMNLVTYLVGDLHLSSAKSATIVTNFMGTLNLLGLLGGFLADAKLGRYLTVAIFASV-TA  111 (573)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~-~~  111 (573)
                      |.++......++....++++..++|.|+++.+|.+..+.+.+.+...++..++.++.|+++||+ |++  +..+..+ ..
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~-~~~--~~~~~~~~~~  275 (375)
T 2gfp_A          199 SGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRF-STL--MWQSVICCLL  275 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHH-HHH--HHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH--HHHHHHHHHH
Confidence            4677777777888888888888899999988999999999999999999999999999999998 772  2233222 22


Q ss_pred             HHHHHHHhhccCCCCCCCCCccccccccccccchhhHHHHHHHHHHHHHhcCccccccccccccCCCCCCCchHHHhHHH
Q 008231          112 LVVGLLTSATSIPSMRPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKAMIF  191 (573)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~  191 (573)
                      .+..+.....                      ....+.+.+++..++.|++.+...+...++..|.+| ++      |++
T Consensus       276 ~~~~~~~~~~----------------------~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~------~g~  326 (375)
T 2gfp_A          276 AGLLMWIPDW----------------------FGVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FL------AGT  326 (375)
T ss_dssp             TSSSSSHHHH----------------------HHHHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HH------HHH
T ss_pred             HHHHHHHHhh----------------------hccccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cc------cch
Confidence            2221111110                      001245566677788899999999999999999987 55      999


Q ss_pred             HHHHHHHHHHhhhHHHHHHhhhhhcccchhHHHHHHH
Q 008231          192 FFNRFYFAISIGSLFAVIVLVYVQDNVGRGWGYGISA  228 (573)
Q Consensus       192 ~~~~~~~~~~ig~~~~~~~~~~l~~~~g~~~~f~~~~  228 (573)
                      +.++.+...++|..++|.+.+.+.+..++...+.+.+
T Consensus       327 ~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~  363 (375)
T 2gfp_A          327 AGALVGGLQNIGSGVLASLSAMLPQTGQGSLGLLMTL  363 (375)
T ss_dssp             HHHHHHHHHHHHHHCCSTTCTHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence            9999999999999999999999988777887776543

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=98.24  E-value=4.3e-06  Score=89.63  Aligned_cols=136  Identities=15%  Similarity=0.118  Sum_probs=98.6

Q ss_pred             ccccchhhHHHHHHHHHhhhhhhhhh-hcccccccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCcccchhH
Q 008231          373 SGSLSAFLFITILLFTSLNEKVFVPL-ARKITHSIQGMTSLQRVGTGLIFSVIAMIVSAVIEQQRRETSVQKHIQISAFW  451 (573)
Q Consensus       373 ~~~~~~~~~~~~l~~~~~~~~~~~~~-~~r~~~~~~~~~~~~~~~~g~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~  451 (573)
                      .+++.+...++.++..++.+++.||+ +||+           .+..+.++..++.++....             +.+.+.
T Consensus        56 ~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~-----------~~~~~~~~~~~~~~~~~~~-------------~~~~~~  111 (524)
T 2xut_A           56 AKDVFHSFVIGVYFFPLLGGWIADRFFGKYN-----------TILWLSLIYCVGHAFLAIF-------------EHSVQG  111 (524)
T ss_dssp             HHHHHHHHHHHHHHTHHHHHHHHTTSSCSHH-----------HHHHHHHHHHHHHHHHHHT-------------SSCHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcchH-----------HHHHHHHHHHHHHHHHHHh-------------cccHHH
Confidence            45566677777778888888988777 6553           2566777777777666553             114556


Q ss_pred             HHHHHHHHHHHHHhhhhhhhheeecccCchhHHHHHHH---HHHHHHHHHHHHHHHHHHHhhhhccCccccccccchhhH
Q 008231          452 LVPQYFLVGAGEAFVYVGQLEFFIREGPERMKSMSTGL---FLSAISMGMFVSSMLVSIVDKITNKHWLRSNLNKGKLNN  528 (573)
Q Consensus       452 lv~~~~l~g~~~~~~~~~~~~~~~~~~p~~~rg~~~gi---~~~~~~lg~~ig~~~~~~i~~~~~~~w~~~~~~~~~~~~  528 (573)
                      +++..++.|++.+...+...+++.|.+|++.|++..+.   .+....+|..+++.+.+.+.+..  +|          ..
T Consensus       112 ~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~--g~----------~~  179 (524)
T 2xut_A          112 FYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNF--GA----------AV  179 (524)
T ss_dssp             HHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTS--CH----------HH
T ss_pred             HHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--cH----------HH
Confidence            67778899999999999999999999999999876666   88889999999999988776432  22          34


Q ss_pred             HHHHHHHHHHHHHHHH
Q 008231          529 FYWLLAVLGLLNFMVF  544 (573)
Q Consensus       529 ~~~~~a~~~~l~~~~~  544 (573)
                      .|++.+++.++..+..
T Consensus       180 ~f~~~~~~~~~~~~~~  195 (524)
T 2xut_A          180 AFGIPGVLMFVATVFF  195 (524)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            5666665555544433

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	573
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.96
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.93
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.4
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.33

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.96  E-value=2.6e-28  Score=255.28  Aligned_cols=391  Identities=10%  Similarity=-0.026  Sum_probs=237.2

Q ss_pred             HHHHHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCc
Q 008231           53 SMNLVTYLVGDLHLSSAKSATIVTNFMGTLNLLGLLGGFLADAKLGRYLTVAIFASVTALVVGLLTSATSIPSMRPPQCD  132 (573)
Q Consensus        53 ~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (573)
                      .+.+.++++ ++|+|.+|.|++.+.+.++..++.+++|+++||+ |||+++.++.++.+++.++++++....        
T Consensus        44 ~~~~~p~~~-~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~-g~r~~~~~~~~~~~~~~~~~~~~~~~~--------  113 (447)
T d1pw4a_          44 FALAMPYLV-EQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILAAAVMLFMGFVPWAT--------  113 (447)
T ss_dssp             HHHHHHHTT-SSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHHHHHCHHHH--------
T ss_pred             HHHHHHHHH-HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchHHHHHHHHHHHHHHhhccccchhh--------
Confidence            345566776 5899999999999999999999999999999998 999999999999999998888753211        


Q ss_pred             cccccccccccchhhHHHHHHHHHHHHHhcCccccccccccccCCCCCCCchHHHhHHHHHHHHHHHHHhhhHHHHHHhh
Q 008231          133 DYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKAMIFFFNRFYFAISIGSLFAVIVLV  212 (573)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~~~~  212 (573)
                                    .+.+.+++.|++.|++.+...+...++++|++|+++      |++++++.+.+.++|..++|.+++
T Consensus       114 --------------~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~~~~~~~g~~i~~~~~~  173 (447)
T d1pw4a_         114 --------------SSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKE------RGGIVSVWNCAHNVGGGIPPLLFL  173 (447)
T ss_dssp             --------------SSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTH------HHHHHHHHHHHHHHHHTSHHHHHH
T ss_pred             --------------hhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhc------ccccccccccccchhhhhhhhhhh
Confidence                          245588999999999999999999999999999988      999999999999999999999988


Q ss_pred             hhhccc-chhHHHHHHHHHHHHHHHHHHhcCccccccCCCCCchhHHHHHHHHHHhccCCCCCCCCCcchhcccccCCCC
Q 008231          213 YVQDNV-GRGWGYGISAGTMVVAAAILLIGTPWYRFKKPRGSPLTVIWRVLLLAWKKRSHPYPDHPSLLNEYQNAKVPHT  291 (573)
Q Consensus       213 ~l~~~~-g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (573)
                      .+.... +|++.|++.++..++..+..+...++.+++.......            +.+.+.++.          ..+..
T Consensus       174 ~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~----------~~~~~  231 (447)
T d1pw4a_         174 LGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIE------------EYKNDYPDD----------YNEKA  231 (447)
T ss_dssp             HHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCT------------TTCCC-------------------
T ss_pred             hHhhhhhcccccchhhhhhHHHHHHHHHHhcccchhhcccchhh------------hhhhhcccc----------hhhcc
Confidence            876644 7999998877766655555444444332221110000            000000000          00000


Q ss_pred             CccchhhhhhhhhhhhhhccccCCcccccchhhHHHHHHHH-hHHHHHHHHHHHHHHhhcccchhhhhhhccccccccce
Q 008231          292 EKFKCLDKAAIIEDNAVANENKNNSWIVSTVTEVEEVKMVL-KLLPIWATCILFWTVYSQMTTFTVEQATFMNRKIGSFT  370 (573)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  370 (573)
                      +                   ++....+. ........+... .....++.....+....+.+.++. +..+.+      .
T Consensus       232 ~-------------------~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~------~  284 (447)
T d1pw4a_         232 E-------------------QELTAKQI-FMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLK-EVKHFA------L  284 (447)
T ss_dssp             -----------------------CCTHH-HHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBT-TBSCCC------H
T ss_pred             c-------------------cccchhhH-HHHHHHcCchHHHHHHHhhhhhhhhhcchhhhhhhcc-cccccc------c
Confidence            0                   00000000 000000111111 111122222222222222221111 111111      1


Q ss_pred             ecccccchhhHHHHHHHHHhhhhhhhhhhcccccccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCcccchh
Q 008231          371 VPSGSLSAFLFITILLFTSLNEKVFVPLARKITHSIQGMTSLQRVGTGLIFSVIAMIVSAVIEQQRRETSVQKHIQISAF  450 (573)
Q Consensus       371 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~  450 (573)
                      ...+.......+..++...+.+++.++..++...        ........+..++.+...            .....+.+
T Consensus       285 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~------------~~~~~~~~  344 (447)
T d1pw4a_         285 DKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRG--------ATGVFFMTLVTIATIVYW------------MNPAGNPT  344 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHH--------HHHHHHHHHHHHHHHHTT------------SCCTTCHH
T ss_pred             chhhhhhhcchhhhhhhhhhhhhhhhhccccccc--------cccchhHHHHHHHHHHHH------------hcccccHH
Confidence            1233444555566666667777777665544211        111111111111111111            12223455


Q ss_pred             HHHHHHHHHHHHHHhhhhhhhheeecccCchhHHHHHHHHHHHHHHH-HHHHHHHHHHHhhhhccCccccccccchhhHH
Q 008231          451 WLVPQYFLVGAGEAFVYVGQLEFFIREGPERMKSMSTGLFLSAISMG-MFVSSMLVSIVDKITNKHWLRSNLNKGKLNNF  529 (573)
Q Consensus       451 ~lv~~~~l~g~~~~~~~~~~~~~~~~~~p~~~rg~~~gi~~~~~~lg-~~ig~~~~~~i~~~~~~~w~~~~~~~~~~~~~  529 (573)
                      ..+...++.|++.....+....+..|.+|++.||++.|+.++..+++ ..+++.+.|++.+..+            ....
T Consensus       345 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~g------------~~~~  412 (447)
T d1pw4a_         345 VDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFG------------WDGG  412 (447)
T ss_dssp             HHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSC------------SHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC------------hHHH
Confidence            55666677788777777888889999999999999999999887774 5668888888876431            2345


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcchh
Q 008231          530 YWLLAVLGLLNFMVFLFFAMKHQYN  554 (573)
Q Consensus       530 ~~~~a~~~~l~~~~~~~~~~~~~~~  554 (573)
                      +++++++++++.++.+++.++.++|
T Consensus       413 ~~~~~~~~~~~~~~~~~~~~~~~~r  437 (447)
T d1pw4a_         413 FMVMIGGSILAVILLIVVMIGEKRR  437 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcccc
Confidence            6666666666666655554443333

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.93  E-value=1.4e-24  Score=222.23  Aligned_cols=398  Identities=11%  Similarity=-0.011  Sum_probs=233.8

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHH
Q 008231           32 WLAAGLILGTELSERICAMGISMNLVTYLVGDLHLSSAKSATIVTNFMGTLNLLGLLGGFLADAKLGRYLTVAIFASVTA  111 (573)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~  111 (573)
                      .|+.|.+....++..+++....+++|.|+++++|+|.++.|++.+++.++..++++++|+++||+ ||||+++++..+..
T Consensus         6 n~~~~~l~~~~f~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~-grr~~l~~~~~~~~   84 (417)
T d1pv7a_           6 NTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKL-GLRKYLLWIITGML   84 (417)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHH-TTCTHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHH
Confidence            46788888888988888888889999999999999999999999999999999999999999999 99999999998888


Q ss_pred             HHHHHHHhhccCCCCCCCCCccccccccccccchhhHHHHHHHHHHHHHhcCccccccccccccCCCCCCCchHHHhHHH
Q 008231          112 LVVGLLTSATSIPSMRPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKAMIF  191 (573)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~  191 (573)
                      ++..++.+....+                      ......++.+.+.+.+.+...........+..+++.    ..+..
T Consensus        85 ~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~  138 (417)
T d1pv7a_          85 VMFAPFFIFIFGP----------------------LLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVS----RRSNF  138 (417)
T ss_dssp             HTHHHHHHHTHHH----------------------HHHTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHHHH----HHHSC
T ss_pred             HHHHHHHHhhhhh----------------------hHHHHHHHHHHHhhhcccccccchhhcccccccchh----hhhHH
Confidence            8887777653211                      111223334444444444433333333333222221    12556


Q ss_pred             HHHHHHHHHHhhhHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHHHHhcCccccccCCCCCchhHHHHHHHHHHhccCC
Q 008231          192 FFNRFYFAISIGSLFAVIVLVYVQDNVGRGWGYGISAGTMVVAAAILLIGTPWYRFKKPRGSPLTVIWRVLLLAWKKRSH  271 (573)
Q Consensus       192 ~~~~~~~~~~ig~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (573)
                      ..+........+..++|.+++.+.+. +|+..+........+..+...+..++.+..+++.+...               
T Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------  202 (417)
T d1pv7a_         139 EFGRARMFGCVGWALGASIVGIMFTI-NNQFVFWLGSGCALILAVLLFFAKTDAPSSATVANAVG---------------  202 (417)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHSSCCCSCSSSCSSHHHH---------------
T ss_pred             HHHHHhhhhccccccccccccccccc-cccccccchhhHHHHHHHHHHHHhcccccchhhhhhhh---------------
Confidence            67777778889999999999988764 45555554444444444444443333222111111000               


Q ss_pred             CCCCCCCcchhcccccCCCCCccchhhhhhhhhhhhhhccccCCcccccchhhHHHHHHHHhHHHHHHHHHHHHHHhhcc
Q 008231          272 PYPDHPSLLNEYQNAKVPHTEKFKCLDKAAIIEDNAVANENKNNSWIVSTVTEVEEVKMVLKLLPIWATCILFWTVYSQM  351 (573)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  351 (573)
                                       ...+.......                       ......+...............+......
T Consensus       203 -----------------~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (417)
T d1pv7a_         203 -----------------ANHSAFSLKLA-----------------------LELFRQPKLWFLSLYVIGVSCTYDVFDQQ  242 (417)
T ss_dssp             -----------------SCCCCCCHHHH-----------------------HHHTTSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -----------------hhccccccccc-----------------------ccccccccccchhhhhHHHHHHHHhhhcc
Confidence                             00000000000                       00000000000000111111111111111


Q ss_pred             cchhhhhhhccccccccceecccccchhhHHHHHHHHHhhhhhhhhhhcccccccCCCchHHHHHHHHHHHHHHHHHHHH
Q 008231          352 TTFTVEQATFMNRKIGSFTVPSGSLSAFLFITILLFTSLNEKVFVPLARKITHSIQGMTSLQRVGTGLIFSVIAMIVSAV  431 (573)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~i~~i~~~~  431 (573)
                      ...+...  ..... ...............++..+...+.+++.+|..+|           +.+..+.++.+++++.+..
T Consensus       243 ~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~-----------~~~~~~~~~~~~~~~~~~~  308 (417)
T d1pv7a_         243 FANFFTS--FFATG-EQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGK-----------NALLLAGTIMSVRIIGSSF  308 (417)
T ss_dssp             HHHHHTT--SSSCH-HHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHH-----------HHHHHHHHHHHHHHHHHHT
T ss_pred             ccccccc--ccccc-ccchhhhcccccccccccccchhhhhhhhcccccc-----------cchhhhHHHHHHhhhcccc
Confidence            1101000  00000 00000111223333344444455555554443332           3356666666666665544


Q ss_pred             HHHHHHhhcccCCcccchhHHHHHHHHHHHHHHhhhhhhhheeecccCchhHHHHHHHH-HHHHHHHHHHHHHHHHHHhh
Q 008231          432 IEQQRRETSVQKHIQISAFWLVPQYFLVGAGEAFVYVGQLEFFIREGPERMKSMSTGLF-LSAISMGMFVSSMLVSIVDK  510 (573)
Q Consensus       432 ~~~~~~~~~~~~~~~~~~~~lv~~~~l~g~~~~~~~~~~~~~~~~~~p~~~rg~~~gi~-~~~~~lg~~ig~~~~~~i~~  510 (573)
                      .              .+.+.+++..++.+++.+...+...+++.|.+|++.||++.|+. ++...+|..+++.+.|++.+
T Consensus       309 ~--------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~  374 (417)
T d1pv7a_         309 A--------------TSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYE  374 (417)
T ss_dssp             C--------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHH
T ss_pred             c--------------cccchhhHHHHHHHHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2              24566677778889999999999999999999999999999985 56678999999999999987


Q ss_pred             hhccCccccccccchhhHHHHHHHHHHHHHHHHHHHHHhhcc
Q 008231          511 ITNKHWLRSNLNKGKLNNFYWLLAVLGLLNFMVFLFFAMKHQ  552 (573)
Q Consensus       511 ~~~~~w~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~  552 (573)
                      ..+            ....|++.+++.++..++.++..++.+
T Consensus       375 ~~g------------~~~~~~~~~~~~~~~~~~~~~~l~~~~  404 (417)
T d1pv7a_         375 SIG------------FQGAYLVLGLVALGFTLISVFTLSGPG  404 (417)
T ss_dssp             HHC------------HHHHHHHHHHHHHHHHHHHHHHSCCSS
T ss_pred             HHC------------HHHHHHHHHHHHHHHHHHHHHhhcCCC
Confidence            532            345677778887777777777665443

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.40  E-value=7.8e-13  Score=136.32  Aligned_cols=180  Identities=17%  Similarity=-0.031  Sum_probs=138.6

Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHH
Q 008231           31 GWLAAGLILGTELSERICAMGISMNLVTYLVGDLHLSSAKSATIVTNFMGTLNLLGLLGGFLADAKLGRYLTVAIFASVT  110 (573)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~  110 (573)
                      +.+.++......++.....+++..+.+.|+.+.++.+..+.++..+.+.+...++.+++|+++||+ +|++.........
T Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~  325 (447)
T d1pw4a_         247 PNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKV-FRGNRGATGVFFM  325 (447)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-STTCHHHHHHHHH
T ss_pred             cCchHHHHHHHhhhhhhhhhcchhhhhhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhc-cccccccccchhH
Confidence            446777888888888888889999999999999999999999999999999999999999999998 8765444433333


Q ss_pred             HHHHHHHHhhccCCCCCCCCCccccccccccccchhhHHHHHHHHHHHHHhcCccccccccccccCCCCCCCchHHHhHH
Q 008231          111 ALVVGLLTSATSIPSMRPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKAMI  190 (573)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~  190 (573)
                      .+...........+                     ..+.+...+..++.|++.++..+....+..|.+|++.      |+
T Consensus       326 ~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~g  378 (447)
T d1pw4a_         326 TLVTIATIVYWMNP---------------------AGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKA------AG  378 (447)
T ss_dssp             HHHHHHHHHTTSCC---------------------TTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTH------HH
T ss_pred             HHHHHHHHHHHhcc---------------------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH------HH
Confidence            32222222211001                     0245566667777888888888888899999999888      99


Q ss_pred             HHHHHHHHHHHh-hhHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHHH
Q 008231          191 FFFNRFYFAISI-GSLFAVIVLVYVQDNVGRGWGYGISAGTMVVAAAIL  238 (573)
Q Consensus       191 ~~~~~~~~~~~i-g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~  238 (573)
                      ++.|+.+...++ |.+++|++.|++.+.+||+..|++.++..+++.++.
T Consensus       379 ~~~g~~~~~~~~~g~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~  427 (447)
T d1pw4a_         379 TAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILL  427 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHH
Confidence            999998887777 567789999999999999998887766655554433

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.33  E-value=4e-13  Score=135.81  Aligned_cols=149  Identities=7%  Similarity=-0.044  Sum_probs=124.7

Q ss_pred             hhcCCCchhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCcccccccccc
Q 008231           62 GDLHLSSAKSATIVTNFMGTLNLLGLLGGFLADAKLGRYLTVAIFASVTALVVGLLTSATSIPSMRPPQCDDYRRKHHQC  141 (573)
Q Consensus        62 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (573)
                      ++.+.+....+...+...+...++..+.|++.||+ |+|+++.++..+.+++..+..+..                    
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~-~~~~~~~~~~~~~~~~~~~~~~~~--------------------  310 (417)
T d1pv7a_         252 ATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRI-GGKNALLLAGTIMSVRIIGSSFAT--------------------  310 (417)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHTCC--------------------
T ss_pred             cccccchhhhcccccccccccccchhhhhhhhccc-ccccchhhhHHHHHHhhhcccccc--------------------
Confidence            34455566777778888889999999999999998 999999999999988888887753                    


Q ss_pred             ccchhhHHHHHHHHHHHHHhcCccccccccccccCCCCCCCchHHHhHHHHHHHH-HHHHHhhhHHHHHHhhhhhcccch
Q 008231          142 IEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKAMIFFFNRF-YFAISIGSLFAVIVLVYVQDNVGR  220 (573)
Q Consensus       142 ~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~-~~~~~ig~~~~~~~~~~l~~~~g~  220 (573)
                            +.+.+++..++.|++.+...+...+++.|.+|++.      |++++++. +....+|..++|.+.|++.+..|+
T Consensus       311 ------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~  378 (417)
T d1pv7a_         311 ------SALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRF------SATIYLVCFCFFKQLAMIFMSVLAGNMYESIGF  378 (417)
T ss_dssp             ------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGG------HHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCH
T ss_pred             ------ccchhhHHHHHHHHHHHHHHHHHHHHHHHHCCHhH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH
Confidence                  45677788888999999999999999999999988      99999985 556789999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHhcCc
Q 008231          221 GWGYGISAGTMVVAAAILLIGTP  243 (573)
Q Consensus       221 ~~~f~~~~~~~~~~~~~~~~~~~  243 (573)
                      +.+|++.++..++..++..+..+
T Consensus       379 ~~~~~~~~~~~~~~~~~~~~~l~  401 (417)
T d1pv7a_         379 QGAYLVLGLVALGFTLISVFTLS  401 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhc
Confidence            99998887776666555444443