Citrus Sinensis ID: 008232
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 573 | 2.2.26 [Sep-21-2011] | |||||||
| Q8RX22 | 711 | MND1-interacting protein | no | no | 0.926 | 0.746 | 0.561 | 1e-151 | |
| Q0WPJ7 | 814 | Putative E3 ubiquitin-pro | no | no | 0.296 | 0.208 | 0.394 | 7e-31 | |
| Q9ZVT8 | 823 | Putative E3 ubiquitin-pro | no | no | 0.300 | 0.208 | 0.390 | 2e-29 |
| >sp|Q8RX22|MIP1_ARATH MND1-interacting protein 1 OS=Arabidopsis thaliana GN=MIP1 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 535 bits (1377), Expect = e-151, Method: Compositional matrix adjust.
Identities = 313/557 (56%), Positives = 400/557 (71%), Gaps = 26/557 (4%)
Query: 1 MGCTVREKHIRTTRRTRSVKPEFDP-CCYLDKASISKSILESGLKPLSYHLGLNDP-SHN 58
MGCTVREKH++ TRR ++ DP C+++K ++S+SI+E+ L YH GL D S N
Sbjct: 1 MGCTVREKHVKPTRRIKAAAFRSDPPLCWVEKIAMSQSIVEN----LVYHPGLTDSGSVN 56
Query: 59 SNP---NADDHGWGYCTEEQLEEILLKNLEFLYNEAISKLVALGYDEDVALKAILKNGHC 115
N N +++ W YCTEE LEEILLK+LEFLYN+A+SKL+ LGY+E VALKA+L NGHC
Sbjct: 57 LNSVTENPEENFWAYCTEEHLEEILLKHLEFLYNQAVSKLLELGYEERVALKAVLSNGHC 116
Query: 116 YGGMDVLTNILHNSLAYLNSSSTSGGNGNTSSVNSEDSEPVFNDLRQLEEYSLAGMVCLL 175
YG +DVLTNI++NSL+YLNS G ++ + +E F DLR LEEYSLAGM+ LL
Sbjct: 117 YGELDVLTNIVNNSLSYLNSGGGGG---GSNGNGEDRTETGFTDLRDLEEYSLAGMIYLL 173
Query: 176 QQVRPHLSKGDAMWCLLMSDLHVGRASSIEIP-GTNVCGGTISNNVDSVSNGG---VNGV 231
QQV+P+LSKGDAMWCLLMS+LHVGRAS++++P + C +NV+ V GG + G
Sbjct: 174 QQVKPNLSKGDAMWCLLMSELHVGRASTLDVPTNRSSCCTKEDSNVEDVGTGGTLDIAGF 233
Query: 232 VAPALCRFHGGWGFGSGGNAEFSVNGFFSYSAEMTLPRDIECPKRFNLSPSMKSLLKRNV 291
+APALCRFHGGWGFG+GG EFS NGF AE+ L R+I+CPKRFNLSPSMKSLLKRNV
Sbjct: 234 MAPALCRFHGGWGFGNGGGPEFSGNGFSMKGAELKLQREIDCPKRFNLSPSMKSLLKRNV 293
Query: 292 AMFAAGFRASSKQGHSQPQACVS-VMAGRDASLVAS-GAEVTVENCEDSKNLKDPNGVDS 349
A FAAG+RAS KQ Q + A D ++V S G + E+S V +
Sbjct: 294 AAFAAGYRASMKQKQIQSSDTIGDSKACNDPAIVKSCGQQPRKSGSEES--------VST 345
Query: 350 VLSKMRDLNIDENLETITDDQKDEIVVTMLHQIKDLERQVKERKEWAHQKAMQAARKLSN 409
VL K RDLN+D+NLE++ D KD ++V +LHQ+KD E++VKERKEWA + AMQAA+K+S
Sbjct: 346 VLEKFRDLNLDDNLESVGVDDKDCVIVDLLHQVKDFEKKVKERKEWAQKNAMQAAQKVSE 405
Query: 410 DLTELKMLRMEREETQRLKKGKQTLEDTTMKRLSEMENALRKASGQVDRANAAVRRLETE 469
+L ELK L ERE Q LKKGKQ +E++T KR ++ E LRKA Q DRAN VR+LE +
Sbjct: 406 ELAELKTLSSEREGIQLLKKGKQAVEESTAKRFTDKEIELRKACSQNDRANVIVRKLENQ 465
Query: 470 NAEIRAEMEASKLSAAESVTTCLEVAKREKKCLKRLLAWEKQKAKLQEEIANEKEKIKEL 529
NAEIRAE E SKLSA+ES+ C+E +K+EKKCLK+L+AWEKQ KLQ+EI EKEKIK L
Sbjct: 466 NAEIRAEREGSKLSASESLKACMEASKKEKKCLKKLVAWEKQILKLQDEITAEKEKIKAL 525
Query: 530 QQCLARIQQDQKETEVR 546
+ LA+I + +KE E +
Sbjct: 526 YKTLAQITEYEKEIEAK 542
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q0WPJ7|RF298_ARATH Putative E3 ubiquitin-protein ligase RF298 OS=Arabidopsis thaliana GN=RF298 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q9ZVT8|RF4_ARATH Putative E3 ubiquitin-protein ligase RF4 OS=Arabidopsis thaliana GN=RF4 PE=3 SV=1 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 573 | ||||||
| 255557617 | 781 | synaptonemal complex protein, putative [ | 0.944 | 0.692 | 0.747 | 0.0 | |
| 225427250 | 723 | PREDICTED: MND1-interacting protein 1 [V | 0.945 | 0.749 | 0.727 | 0.0 | |
| 224126303 | 729 | predicted protein [Populus trichocarpa] | 0.938 | 0.737 | 0.724 | 0.0 | |
| 224138884 | 718 | predicted protein [Populus trichocarpa] | 0.930 | 0.742 | 0.743 | 0.0 | |
| 356510649 | 733 | PREDICTED: MND1-interacting protein 1-li | 0.931 | 0.728 | 0.719 | 0.0 | |
| 449462005 | 719 | PREDICTED: MND1-interacting protein 1-li | 0.931 | 0.742 | 0.685 | 0.0 | |
| 356563457 | 721 | PREDICTED: MND1-interacting protein 1-li | 0.930 | 0.739 | 0.721 | 0.0 | |
| 147765511 | 1207 | hypothetical protein VITISV_004428 [Viti | 0.877 | 0.416 | 0.657 | 0.0 | |
| 357476681 | 737 | Baculoviral IAP repeat-containing protei | 0.938 | 0.729 | 0.639 | 0.0 | |
| 334184701 | 711 | RING-finger domain-containing protein [A | 0.928 | 0.748 | 0.627 | 0.0 |
| >gi|255557617|ref|XP_002519838.1| synaptonemal complex protein, putative [Ricinus communis] gi|223540884|gb|EEF42442.1| synaptonemal complex protein, putative [Ricinus communis] | Back alignment and taxonomy information |
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Score = 813 bits (2100), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 426/570 (74%), Positives = 486/570 (85%), Gaps = 29/570 (5%)
Query: 1 MGCTVREKHIRTTRRTRSVKPEFDPCCYLDKASISKSILESGLKPLSYHLGLNDPSHNSN 60
MGCTVREKHIRT RR RS KPEFDPCCY +SISKSILESGLKPL+YHLGL+DP+H +
Sbjct: 47 MGCTVREKHIRTNRRARSAKPEFDPCCY--ASSISKSILESGLKPLAYHLGLHDPTHTNP 104
Query: 61 PNA------DDHGWGYCTEEQLEEILLKNLEFLYNEAISKLVALGYDEDVALKAILKNGH 114
+D+GWGYCTEEQLEEILLKNLEFLY EAI+KLV+LGYDED ALKAIL+NGH
Sbjct: 105 NPNSSNANLEDNGWGYCTEEQLEEILLKNLEFLYKEAIAKLVSLGYDEDTALKAILRNGH 164
Query: 115 CYGGMDVLTNILHNSLAYLNSSSTSGGNGNTSSVNSEDSEPVFNDLRQLEEYSLAGMVCL 174
CYGGMDVLTNILHNSLA+LNS+S G N ++S + ++SEPVFNDLRQLEEYSLA MVCL
Sbjct: 165 CYGGMDVLTNILHNSLAHLNSNS--GTNCSSSHGSLDESEPVFNDLRQLEEYSLAAMVCL 222
Query: 175 LQQVRPHLSKGDAMWCLLMSDLHVGRASSIEIPGTNVCGGTISNNVDSVSNGGVN---GV 231
LQQVRPHLSKGDAMWCLLMSDLHVGRAS+IEIP N T+ ++V+S S+ GV+ GV
Sbjct: 223 LQQVRPHLSKGDAMWCLLMSDLHVGRASTIEIPPGN-GNITVQSSVESFSSNGVDNGVGV 281
Query: 232 VAPALCRFHGGWGFGSGGNAEFSVNGFFSYSAEMTLPRDIECPKRFNLSPSMKSLLKRNV 291
VAPALCRFHGGWGFG+ G +EF+VNGFFSYSAEMTLP+DI+CPKRFNLSPSMKSLLKRNV
Sbjct: 282 VAPALCRFHGGWGFGNEGGSEFAVNGFFSYSAEMTLPKDIDCPKRFNLSPSMKSLLKRNV 341
Query: 292 AMFAAGFRASSKQ----GHSQPQACVSVMAGRDASLVASGAEVTVENCEDSKNLKDPNGV 347
AMFAAGFRA+SKQ +QP++CV V +G D + ++G+ V VEN E S+N K+ +GV
Sbjct: 342 AMFAAGFRANSKQMQLQSQAQPESCVGVSSGGDVTPASAGSRVLVENGEVSQNSKNQDGV 401
Query: 348 DSV-----------LSKMRDLNIDENLETITDDQKDEIVVTMLHQIKDLERQVKERKEWA 396
+SV LSK DLN+DENLE +DQKDE++VT+LHQIKDLERQVKERKEWA
Sbjct: 402 NSVWNKFQDGISSVLSKFSDLNLDENLELAGEDQKDEMIVTLLHQIKDLERQVKERKEWA 461
Query: 397 HQKAMQAARKLSNDLTELKMLRMEREETQRLKKGKQTLEDTTMKRLSEMENALRKASGQV 456
HQKAMQAARKLS+DLTELKMLRMEREETQRLKKGKQTLED+TMKRLSEMENALRKASGQV
Sbjct: 462 HQKAMQAARKLSSDLTELKMLRMEREETQRLKKGKQTLEDSTMKRLSEMENALRKASGQV 521
Query: 457 DRANAAVRRLETENAEIRAEMEASKLSAAESVTTCLEVAKREKKCLKRLLAWEKQKAKLQ 516
DRANAAVRRLETENAEIRAEMEASKLS++ES +TC+E KREKK LK+LLAWEKQK KLQ
Sbjct: 522 DRANAAVRRLETENAEIRAEMEASKLSSSESTSTCMEAVKREKKWLKKLLAWEKQKTKLQ 581
Query: 517 EEIANEKEKIKELQQCLARIQQDQKETEVR 546
+EIA+EKEKIKELQ+CLA ++Q QKE E +
Sbjct: 582 DEIADEKEKIKELQRCLAMVEQAQKEAEAK 611
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Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225427250|ref|XP_002281049.1| PREDICTED: MND1-interacting protein 1 [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|224126303|ref|XP_002329521.1| predicted protein [Populus trichocarpa] gi|222870230|gb|EEF07361.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|224138884|ref|XP_002326714.1| predicted protein [Populus trichocarpa] gi|222834036|gb|EEE72513.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|356510649|ref|XP_003524049.1| PREDICTED: MND1-interacting protein 1-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|449462005|ref|XP_004148732.1| PREDICTED: MND1-interacting protein 1-like [Cucumis sativus] gi|449521144|ref|XP_004167590.1| PREDICTED: MND1-interacting protein 1-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|356563457|ref|XP_003549979.1| PREDICTED: MND1-interacting protein 1-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|147765511|emb|CAN78110.1| hypothetical protein VITISV_004428 [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|357476681|ref|XP_003608626.1| Baculoviral IAP repeat-containing protein [Medicago truncatula] gi|355509681|gb|AES90823.1| Baculoviral IAP repeat-containing protein [Medicago truncatula] | Back alignment and taxonomy information |
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| >gi|334184701|ref|NP_001189683.1| RING-finger domain-containing protein [Arabidopsis thaliana] gi|330254001|gb|AEC09095.1| RING-finger domain-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 573 | ||||||
| TAIR|locus:2062374 | 738 | AT2G35330 [Arabidopsis thalian | 0.938 | 0.728 | 0.585 | 5e-163 | |
| TAIR|locus:2033765 | 711 | AT1G32530 [Arabidopsis thalian | 0.924 | 0.745 | 0.519 | 5.2e-136 | |
| TAIR|locus:2139310 | 814 | AT4G03000 [Arabidopsis thalian | 0.312 | 0.219 | 0.379 | 1.8e-44 | |
| UNIPROTKB|Q9Y2K3 | 1946 | MYH15 "Myosin-15" [Homo sapien | 0.472 | 0.139 | 0.266 | 5.4e-06 | |
| UNIPROTKB|F1PWZ2 | 1941 | MYH7B "Uncharacterized protein | 0.380 | 0.112 | 0.278 | 1.1e-05 | |
| RGD|1307994 | 1941 | Myh7b "myosin, heavy chain 7B, | 0.329 | 0.097 | 0.300 | 1.9e-05 | |
| UNIPROTKB|F1S4X7 | 1944 | MYH7B "Uncharacterized protein | 0.380 | 0.112 | 0.274 | 1.9e-05 | |
| UNIPROTKB|E1BPX8 | 1942 | LOC521764 "Uncharacterized pro | 0.329 | 0.097 | 0.296 | 3.9e-05 | |
| UNIPROTKB|F1PUU8 | 1923 | MYH15 "Uncharacterized protein | 0.467 | 0.139 | 0.256 | 6.4e-05 | |
| MGI|MGI:3710243 | 1941 | Myh7b "myosin, heavy chain 7B, | 0.380 | 0.112 | 0.270 | 6.5e-05 |
| TAIR|locus:2062374 AT2G35330 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1587 (563.7 bits), Expect = 5.0e-163, P = 5.0e-163
Identities = 322/550 (58%), Positives = 399/550 (72%)
Query: 1 MGCTVREKHIRTTRRTRSVKPEFDPCCYLDKASISKSILESGLKPLSYHLGLNDPSHNSN 60
MGCTVREKH+R R+TRSVKPEFDPCC LD+ ++SKSI+ES LK L YH GL D SN
Sbjct: 28 MGCTVREKHVRPNRKTRSVKPEFDPCCLLDRTALSKSIVESSLKHLVYHPGLLDSCPESN 87
Query: 61 PNA---DDHGWGYCTEEQLEEILLKNLEFLYNEAISKLVALGYDEDVALKAILKNGHCYG 117
P+ D++GWGYCTEEQLE+ILLK+LE+LYNEAISKLV GYDEDVAL+A+L NG+CYG
Sbjct: 88 PSGSFEDNNGWGYCTEEQLEDILLKHLEYLYNEAISKLVGSGYDEDVALRAVLSNGYCYG 147
Query: 118 GMDVLTNILHNSLAYLXXXXXXXXXXXXXXXXXEDSEPVFNDLRQLEEYSLAGMVCLLQQ 177
GMDV+TNILHNSLAYL + SE VF DLRQLEEYSLAGMV LLQQ
Sbjct: 148 GMDVMTNILHNSLAYLKSNTGEGSNVNNE----DQSETVFTDLRQLEEYSLAGMVYLLQQ 203
Query: 178 VRPHLSKGDAMWCLLMSDLHVGRASSIEIPGTNVCGGT-IXXXXXXXXXXXXXXXXAPAL 236
V+P+LSKGDAMWCLLMS+LHVGRAS+++IP + + + APAL
Sbjct: 204 VKPNLSKGDAMWCLLMSELHVGRASTMDIPSSGKGDSSNVGVGGASSTVNGVGGAIAPAL 263
Query: 237 CRFHXXXXXXXXXNAEFSVNGFFSYSAEMTLPRDIECPKRFNLSPSMKSLLKRNVAMFAA 296
CRFH +FS NGF +S E+TL R+I+CP+RFNLSPSMKSLL+ NVA FAA
Sbjct: 264 CRFHGGWGFGNGKGPKFSGNGFSLHSEELTLQREIDCPRRFNLSPSMKSLLRENVAAFAA 323
Query: 297 GFRASSKQGHSQPQACVSVMAGRDASLVASGAEVTVENCEDSKNLKDPNGVDSVLSKMRD 356
G+RAS +Q Q Q S +G SL + A E CE SVL K RD
Sbjct: 324 GYRASMEQ-KKQVQM-QSETSG--TSLSCTAAATHSEKCEQPHVFGSEECFSSVLEKFRD 379
Query: 357 LNIDENLETITDDQKDEIVVTMLHQIKDLERQVKERKEWAHQKAMQAARKLSNDLTELKM 416
LN+D+N+++ ++ KD+ ++ +L Q++DL++Q+KERK+WA +KAMQAA+K+S++L+ELK
Sbjct: 380 LNLDDNVDSAPEELKDDALIGLLQQVQDLKKQLKERKDWAQKKAMQAAQKVSDELSELKS 439
Query: 417 LRMEREETQRLKKGKQTLEDTTMKRLSEMENALRKASGQVDRANAAVRRLETENAEIRAE 476
LR EREE QR+KKGKQT ED+T+K+LSEMENALRKASGQVD+ANA VR LE E+AEIRAE
Sbjct: 440 LRSEREEIQRVKKGKQTREDSTLKKLSEMENALRKASGQVDKANAVVRALENESAEIRAE 499
Query: 477 MEASKLSAAESVTTCLEVAKREKKCLKRLLAWEKQKAKLQXXXXXXXXXXXXLQQCLARI 536
MEASKLSA+ES+T C+E +K+EKKCLK+LLAWEKQK KLQ L + LA+I
Sbjct: 500 MEASKLSASESLTACMEASKKEKKCLKKLLAWEKQKMKLQDEITAEKEKIKALNRALAQI 559
Query: 537 QQDQKETEVR 546
Q++KE E +
Sbjct: 560 TQEEKEYEAK 569
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| TAIR|locus:2033765 AT1G32530 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2139310 AT4G03000 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q9Y2K3 MYH15 "Myosin-15" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F1PWZ2 MYH7B "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
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| RGD|1307994 Myh7b "myosin, heavy chain 7B, cardiac muscle, beta" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F1S4X7 MYH7B "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
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| UNIPROTKB|E1BPX8 LOC521764 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F1PUU8 MYH15 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
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| MGI|MGI:3710243 Myh7b "myosin, heavy chain 7B, cardiac muscle, beta" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | GSVIVG00015790001 | SubName- Full=Chromosome chr2 scaffold_11, whole genome shotgun sequence; (723 aa) | ||||||
(Vitis vinifera) | ||||||||
| Sorry, there are no predicted associations at the current settings. |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 573 | |||
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 2e-11 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 1e-07 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 3e-07 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 5e-07 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 1e-06 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 2e-06 | |
| pfam13514 | 1118 | pfam13514, AAA_27, AAA domain | 2e-06 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 3e-06 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 5e-06 | |
| COG0419 | 908 | COG0419, SbcC, ATPase involved in DNA repair [DNA | 9e-06 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 2e-05 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 2e-05 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 3e-05 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 4e-05 | |
| pfam01576 | 859 | pfam01576, Myosin_tail_1, Myosin tail | 4e-05 | |
| PRK03918 | 880 | PRK03918, PRK03918, chromosome segregation protein | 7e-05 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 1e-04 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 1e-04 | |
| pfam12128 | 1198 | pfam12128, DUF3584, Protein of unknown function (D | 1e-04 | |
| COG4942 | 420 | COG4942, COG4942, Membrane-bound metallopeptidase | 1e-04 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 2e-04 | |
| PRK09510 | 387 | PRK09510, tolA, cell envelope integrity inner memb | 2e-04 | |
| TIGR04211 | 198 | TIGR04211, SH3_and_anchor, SH3 domain protein | 2e-04 | |
| pfam13868 | 349 | pfam13868, Trichoplein, Tumour suppressor, Mitosta | 2e-04 | |
| COG3064 | 387 | COG3064, TolA, Membrane protein involved in colici | 3e-04 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 4e-04 | |
| PRK03918 | 880 | PRK03918, PRK03918, chromosome segregation protein | 4e-04 | |
| pfam00769 | 244 | pfam00769, ERM, Ezrin/radixin/moesin family | 4e-04 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 8e-04 | |
| COG1579 | 239 | COG1579, COG1579, Zn-ribbon protein, possibly nucl | 8e-04 | |
| TIGR02794 | 346 | TIGR02794, tolA_full, TolA protein | 8e-04 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 9e-04 | |
| PRK04778 | 569 | PRK04778, PRK04778, septation ring formation regul | 9e-04 | |
| COG0419 | 908 | COG0419, SbcC, ATPase involved in DNA repair [DNA | 0.001 | |
| PRK03918 | 880 | PRK03918, PRK03918, chromosome segregation protein | 0.001 | |
| PRK03918 | 880 | PRK03918, PRK03918, chromosome segregation protein | 0.002 | |
| COG4942 | 420 | COG4942, COG4942, Membrane-bound metallopeptidase | 0.002 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 0.003 | |
| COG0419 | 908 | COG0419, SbcC, ATPase involved in DNA repair [DNA | 0.003 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 0.003 | |
| COG4372 | 499 | COG4372, COG4372, Uncharacterized protein conserve | 0.003 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 0.004 | |
| PRK03918 | 880 | PRK03918, PRK03918, chromosome segregation protein | 0.004 |
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
Score = 66.6 bits (163), Expect = 2e-11
Identities = 42/210 (20%), Positives = 84/210 (40%), Gaps = 26/210 (12%)
Query: 351 LSKMRDLNIDENLETITDDQKDEIVVTMLHQIKDLERQVK----------ERKEWAHQ-- 398
K+ ENL+ + D I+ + Q+K LERQ + E +E
Sbjct: 178 ERKLER--TRENLDRLED-----ILNELERQLKSLERQAEKAERYKELKAELRELELALL 230
Query: 399 --KAMQAARKLSNDLTELKMLRMEREETQRLKKGKQTLEDTTMKRLSEMENALRKASGQV 456
+ + +L ELK E EE + + + +SE+E + + ++
Sbjct: 231 VLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKEL 290
Query: 457 DRANAAVRRLETENAEIRAEMEASKLSAAESVTTCLEVAKREKKCLKRLLA-WEKQKAKL 515
+ RLE + +R + + E + LE + + L LA E++ +L
Sbjct: 291 YALANEISRLEQQKQILRERLANLERQLEE-LEAQLEELESKLDELAEELAELEEKLEEL 349
Query: 516 QEEIANEKEKIKEL---QQCLARIQQDQKE 542
+EE+ + + +++EL + L ++ +E
Sbjct: 350 KEELESLEAELEELEAELEELESRLEELEE 379
|
SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179 |
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >gnl|CDD|205692 pfam13514, AAA_27, AAA domain | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >gnl|CDD|144972 pfam01576, Myosin_tail_1, Myosin tail | Back alignment and domain information |
|---|
| >gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >gnl|CDD|221432 pfam12128, DUF3584, Protein of unknown function (DUF3584) | Back alignment and domain information |
|---|
| >gnl|CDD|227278 COG4942, COG4942, Membrane-bound metallopeptidase [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein TolA; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|234501 TIGR04211, SH3_and_anchor, SH3 domain protein | Back alignment and domain information |
|---|
| >gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin | Back alignment and domain information |
|---|
| >gnl|CDD|225606 COG3064, TolA, Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|216108 pfam00769, ERM, Ezrin/radixin/moesin family | Back alignment and domain information |
|---|
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >gnl|CDD|224495 COG1579, COG1579, Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only] | Back alignment and domain information |
|---|
| >gnl|CDD|234017 TIGR02794, tolA_full, TolA protein | Back alignment and domain information |
|---|
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >gnl|CDD|179877 PRK04778, PRK04778, septation ring formation regulator EzrA; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|227278 COG4942, COG4942, Membrane-bound metallopeptidase [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >gnl|CDD|226809 COG4372, COG4372, Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown] | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 573 | |||
| TIGR02169 | 1164 | SMC_prok_A chromosome segregation protein SMC, pri | 97.02 | |
| TIGR02168 | 1179 | SMC_prok_B chromosome segregation protein SMC, com | 96.75 | |
| TIGR02169 | 1164 | SMC_prok_A chromosome segregation protein SMC, pri | 96.71 | |
| PRK09039 | 343 | hypothetical protein; Validated | 96.47 | |
| KOG1029 | 1118 | consensus Endocytic adaptor protein intersectin [S | 96.39 | |
| PRK02224 | 880 | chromosome segregation protein; Provisional | 96.23 | |
| KOG0980 | 980 | consensus Actin-binding protein SLA2/Huntingtin-in | 96.04 | |
| PRK03918 | 880 | chromosome segregation protein; Provisional | 96.0 | |
| PRK11637 | 428 | AmiB activator; Provisional | 95.92 | |
| COG1196 | 1163 | Smc Chromosome segregation ATPases [Cell division | 95.92 | |
| PRK03918 | 880 | chromosome segregation protein; Provisional | 95.87 | |
| PRK02224 | 880 | chromosome segregation protein; Provisional | 95.43 | |
| PF07926 | 132 | TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: | 95.33 | |
| KOG0933 | 1174 | consensus Structural maintenance of chromosome pro | 95.25 | |
| KOG0963 | 629 | consensus Transcription factor/CCAAT displacement | 95.13 | |
| PF00261 | 237 | Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop | 95.09 | |
| COG1196 | 1163 | Smc Chromosome segregation ATPases [Cell division | 95.07 | |
| KOG0250 | 1074 | consensus DNA repair protein RAD18 (SMC family pro | 95.0 | |
| PF07888 | 546 | CALCOCO1: Calcium binding and coiled-coil domain ( | 94.84 | |
| PF00261 | 237 | Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop | 94.69 | |
| PF10186 | 302 | Atg14: UV radiation resistance protein and autopha | 94.47 | |
| TIGR00606 | 1311 | rad50 rad50. This family is based on the phylogeno | 94.3 | |
| KOG0161 | 1930 | consensus Myosin class II heavy chain [Cytoskeleto | 94.25 | |
| PF05276 | 239 | SH3BP5: SH3 domain-binding protein 5 (SH3BP5); Int | 94.21 | |
| PF05701 | 522 | WEMBL: Weak chloroplast movement under blue light; | 94.15 | |
| PRK11637 | 428 | AmiB activator; Provisional | 94.0 | |
| PHA02562 | 562 | 46 endonuclease subunit; Provisional | 93.75 | |
| KOG0612 | 1317 | consensus Rho-associated, coiled-coil containing p | 93.71 | |
| TIGR00606 | 1311 | rad50 rad50. This family is based on the phylogeno | 93.7 | |
| TIGR01843 | 423 | type_I_hlyD type I secretion membrane fusion prote | 93.58 | |
| KOG0250 | 1074 | consensus DNA repair protein RAD18 (SMC family pro | 93.53 | |
| PF10481 | 307 | CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR0 | 93.22 | |
| KOG0980 | 980 | consensus Actin-binding protein SLA2/Huntingtin-in | 93.0 | |
| PRK04863 | 1486 | mukB cell division protein MukB; Provisional | 92.94 | |
| PF09726 | 697 | Macoilin: Transmembrane protein; InterPro: IPR0191 | 92.84 | |
| KOG0161 | 1930 | consensus Myosin class II heavy chain [Cytoskeleto | 92.81 | |
| PF08317 | 325 | Spc7: Spc7 kinetochore protein; InterPro: IPR01325 | 92.69 | |
| KOG0933 | 1174 | consensus Structural maintenance of chromosome pro | 92.66 | |
| PRK04778 | 569 | septation ring formation regulator EzrA; Provision | 92.48 | |
| PF12718 | 143 | Tropomyosin_1: Tropomyosin like; InterPro: IPR0005 | 92.36 | |
| PF05911 | 769 | DUF869: Plant protein of unknown function (DUF869) | 92.18 | |
| PF13514 | 1111 | AAA_27: AAA domain | 92.1 | |
| PRK04863 | 1486 | mukB cell division protein MukB; Provisional | 92.05 | |
| PF12128 | 1201 | DUF3584: Protein of unknown function (DUF3584); In | 91.75 | |
| KOG0612 | 1317 | consensus Rho-associated, coiled-coil containing p | 91.73 | |
| TIGR01843 | 423 | type_I_hlyD type I secretion membrane fusion prote | 91.67 | |
| TIGR02894 | 161 | DNA_bind_RsfA transcription factor, RsfA family. I | 91.64 | |
| COG1340 | 294 | Uncharacterized archaeal coiled-coil protein [Func | 91.45 | |
| PF13514 | 1111 | AAA_27: AAA domain | 91.25 | |
| COG2433 | 652 | Uncharacterized conserved protein [Function unknow | 91.24 | |
| PF03962 | 188 | Mnd1: Mnd1 family; InterPro: IPR005647 This family | 91.21 | |
| PF13166 | 712 | AAA_13: AAA domain | 91.14 | |
| KOG0979 | 1072 | consensus Structural maintenance of chromosome pro | 90.93 | |
| PF08317 | 325 | Spc7: Spc7 kinetochore protein; InterPro: IPR01325 | 90.72 | |
| PF05667 | 594 | DUF812: Protein of unknown function (DUF812); Inte | 90.69 | |
| PF12128 | 1201 | DUF3584: Protein of unknown function (DUF3584); In | 90.62 | |
| KOG4674 | 1822 | consensus Uncharacterized conserved coiled-coil pr | 90.61 | |
| TIGR02680 | 1353 | conserved hypothetical protein TIGR02680. Members | 90.6 | |
| PF15070 | 617 | GOLGA2L5: Putative golgin subfamily A member 2-lik | 90.53 | |
| COG0419 | 908 | SbcC ATPase involved in DNA repair [DNA replicatio | 90.13 | |
| KOG0978 | 698 | consensus E3 ubiquitin ligase involved in syntaxin | 90.09 | |
| PHA02562 | 562 | 46 endonuclease subunit; Provisional | 90.08 | |
| KOG0964 | 1200 | consensus Structural maintenance of chromosome pro | 90.04 | |
| PF00038 | 312 | Filament: Intermediate filament protein; InterPro: | 89.99 | |
| PF00769 | 246 | ERM: Ezrin/radixin/moesin family; InterPro: IPR011 | 89.89 | |
| PRK11281 | 1113 | hypothetical protein; Provisional | 89.85 | |
| KOG0996 | 1293 | consensus Structural maintenance of chromosome pro | 89.73 | |
| PF04012 | 221 | PspA_IM30: PspA/IM30 family; InterPro: IPR007157 T | 89.37 | |
| PF04111 | 314 | APG6: Autophagy protein Apg6; InterPro: IPR007243 | 89.15 | |
| PF10174 | 775 | Cast: RIM-binding protein of the cytomatrix active | 88.97 | |
| PF15397 | 258 | DUF4618: Domain of unknown function (DUF4618) | 88.78 | |
| TIGR02977 | 219 | phageshock_pspA phage shock protein A. Members of | 88.77 | |
| KOG0996 | 1293 | consensus Structural maintenance of chromosome pro | 88.68 | |
| COG4942 | 420 | Membrane-bound metallopeptidase [Cell division and | 88.66 | |
| PF11559 | 151 | ADIP: Afadin- and alpha -actinin-Binding; InterPro | 88.61 | |
| PF09730 | 717 | BicD: Microtubule-associated protein Bicaudal-D; I | 88.38 | |
| PF00038 | 312 | Filament: Intermediate filament protein; InterPro: | 88.37 | |
| KOG0995 | 581 | consensus Centromere-associated protein HEC1 [Cell | 88.32 | |
| PF04156 | 191 | IncA: IncA protein; InterPro: IPR007285 Chlamydia | 88.31 | |
| COG0419 | 908 | SbcC ATPase involved in DNA repair [DNA replicatio | 88.25 | |
| KOG2412 | 591 | consensus Nuclear-export-signal (NES)-containing p | 88.18 | |
| PF05600 | 507 | DUF773: Protein of unknown function (DUF773); Inte | 88.18 | |
| PRK09039 | 343 | hypothetical protein; Validated | 88.1 | |
| PF06248 | 593 | Zw10: Centromere/kinetochore Zw10; InterPro: IPR00 | 87.9 | |
| smart00787 | 312 | Spc7 Spc7 kinetochore protein. This domain is foun | 87.68 | |
| KOG4673 | 961 | consensus Transcription factor TMF, TATA element m | 87.67 | |
| PF05911 | 769 | DUF869: Plant protein of unknown function (DUF869) | 87.54 | |
| PF05701 | 522 | WEMBL: Weak chloroplast movement under blue light; | 87.29 | |
| TIGR02971 | 327 | heterocyst_DevB ABC exporter membrane fusion prote | 87.29 | |
| PRK04778 | 569 | septation ring formation regulator EzrA; Provision | 86.93 | |
| KOG0982 | 502 | consensus Centrosomal protein Nuf [Cell cycle cont | 86.83 | |
| PF05667 | 594 | DUF812: Protein of unknown function (DUF812); Inte | 86.28 | |
| PRK10884 | 206 | SH3 domain-containing protein; Provisional | 86.15 | |
| COG4942 | 420 | Membrane-bound metallopeptidase [Cell division and | 86.09 | |
| cd07627 | 216 | BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of | 85.65 | |
| PF09726 | 697 | Macoilin: Transmembrane protein; InterPro: IPR0191 | 85.62 | |
| KOG4674 | 1822 | consensus Uncharacterized conserved coiled-coil pr | 85.57 | |
| COG1842 | 225 | PspA Phage shock protein A (IM30), suppresses sigm | 85.41 | |
| PF10186 | 302 | Atg14: UV radiation resistance protein and autopha | 85.4 | |
| PF15070 | 617 | GOLGA2L5: Putative golgin subfamily A member 2-lik | 85.16 | |
| PF07888 | 546 | CALCOCO1: Calcium binding and coiled-coil domain ( | 85.15 | |
| TIGR02680 | 1353 | conserved hypothetical protein TIGR02680. Members | 85.07 | |
| KOG4403 | 575 | consensus Cell surface glycoprotein STIM, contains | 84.91 | |
| PF04012 | 221 | PspA_IM30: PspA/IM30 family; InterPro: IPR007157 T | 84.91 | |
| PF15066 | 527 | CAGE1: Cancer-associated gene protein 1 family | 84.87 | |
| PF09731 | 582 | Mitofilin: Mitochondrial inner membrane protein; I | 84.56 | |
| TIGR01005 | 754 | eps_transp_fam exopolysaccharide transport protein | 84.53 | |
| PRK01156 | 895 | chromosome segregation protein; Provisional | 84.36 | |
| PF02845 | 42 | CUE: CUE domain; InterPro: IPR003892 This domain m | 83.99 | |
| KOG4643 | 1195 | consensus Uncharacterized coiled-coil protein [Fun | 83.91 | |
| COG1579 | 239 | Zn-ribbon protein, possibly nucleic acid-binding [ | 83.22 | |
| smart00546 | 43 | CUE Domain that may be involved in binding ubiquit | 83.15 | |
| TIGR03185 | 650 | DNA_S_dndD DNA sulfur modification protein DndD. T | 83.03 | |
| TIGR01000 | 457 | bacteriocin_acc bacteriocin secretion accessory pr | 82.92 | |
| PF13904 | 264 | DUF4207: Domain of unknown function (DUF4207) | 82.89 | |
| PRK10246 | 1047 | exonuclease subunit SbcC; Provisional | 82.79 | |
| PRK10698 | 222 | phage shock protein PspA; Provisional | 82.78 | |
| PF14197 | 69 | Cep57_CLD_2: Centrosome localisation domain of PPC | 82.55 | |
| PRK10246 | 1047 | exonuclease subunit SbcC; Provisional | 82.44 | |
| PRK12704 | 520 | phosphodiesterase; Provisional | 82.17 | |
| PF05615 | 139 | THOC7: Tho complex subunit 7; InterPro: IPR008501 | 82.17 | |
| PF01576 | 859 | Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu | 81.47 | |
| TIGR00618 | 1042 | sbcc exonuclease SbcC. This family is based on the | 81.36 | |
| PF13166 | 712 | AAA_13: AAA domain | 80.46 | |
| PF15369 | 328 | KIAA1328: Uncharacterised protein KIAA1328 | 80.45 | |
| KOG1029 | 1118 | consensus Endocytic adaptor protein intersectin [S | 80.21 |
| >TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.13 Score=60.72 Aligned_cols=26 Identities=35% Similarity=0.469 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008232 504 RLLAWEKQKAKLQEEIANEKEKIKEL 529 (573)
Q Consensus 504 kl~~WEkQK~~LQEEla~eK~Kl~~l 529 (573)
.+..++.+...+++++...+.++..+
T Consensus 344 ~~~~~~~~~~~~~~~l~~~~~~~~~~ 369 (1164)
T TIGR02169 344 EIEEERKRRDKLTEEYAELKEELEDL 369 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444433333333
|
SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. |
| >TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >PRK09039 hypothetical protein; Validated | Back alignment and domain information |
|---|
| >KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >PRK02224 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton] | Back alignment and domain information |
|---|
| >PRK03918 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >PRK11637 AmiB activator; Provisional | Back alignment and domain information |
|---|
| >COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >PRK03918 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >PRK02224 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT) | Back alignment and domain information |
|---|
| >KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
| >KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription] | Back alignment and domain information |
|---|
| >PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells | Back alignment and domain information |
|---|
| >COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT) | Back alignment and domain information |
|---|
| >PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells | Back alignment and domain information |
|---|
| >PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking | Back alignment and domain information |
|---|
| >TIGR00606 rad50 rad50 | Back alignment and domain information |
|---|
| >KOG0161 consensus Myosin class II heavy chain [Cytoskeleton] | Back alignment and domain information |
|---|
| >PF05276 SH3BP5: SH3 domain-binding protein 5 (SH3BP5); InterPro: IPR007940 The SH3 domain-binding protein inhibits the auto and transphophorylation of BTK and acts as a negative regulator of BTK-related signalling in B cells | Back alignment and domain information |
|---|
| >PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function | Back alignment and domain information |
|---|
| >PRK11637 AmiB activator; Provisional | Back alignment and domain information |
|---|
| >PHA02562 46 endonuclease subunit; Provisional | Back alignment and domain information |
|---|
| >KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >TIGR00606 rad50 rad50 | Back alignment and domain information |
|---|
| >TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family | Back alignment and domain information |
|---|
| >KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore [] | Back alignment and domain information |
|---|
| >KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton] | Back alignment and domain information |
|---|
| >PRK04863 mukB cell division protein MukB; Provisional | Back alignment and domain information |
|---|
| >PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes | Back alignment and domain information |
|---|
| >KOG0161 consensus Myosin class II heavy chain [Cytoskeleton] | Back alignment and domain information |
|---|
| >PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [] | Back alignment and domain information |
|---|
| >KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
| >PRK04778 septation ring formation regulator EzrA; Provisional | Back alignment and domain information |
|---|
| >PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells | Back alignment and domain information |
|---|
| >PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants | Back alignment and domain information |
|---|
| >PF13514 AAA_27: AAA domain | Back alignment and domain information |
|---|
| >PRK04863 mukB cell division protein MukB; Provisional | Back alignment and domain information |
|---|
| >PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins | Back alignment and domain information |
|---|
| >KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family | Back alignment and domain information |
|---|
| >TIGR02894 DNA_bind_RsfA transcription factor, RsfA family | Back alignment and domain information |
|---|
| >COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown] | Back alignment and domain information |
|---|
| >PF13514 AAA_27: AAA domain | Back alignment and domain information |
|---|
| >COG2433 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
| >PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast) | Back alignment and domain information |
|---|
| >PF13166 AAA_13: AAA domain | Back alignment and domain information |
|---|
| >KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] | Back alignment and domain information |
|---|
| >PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [] | Back alignment and domain information |
|---|
| >PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
| >PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins | Back alignment and domain information |
|---|
| >KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown] | Back alignment and domain information |
|---|
| >TIGR02680 conserved hypothetical protein TIGR02680 | Back alignment and domain information |
|---|
| >PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5 | Back alignment and domain information |
|---|
| >COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PHA02562 46 endonuclease subunit; Provisional | Back alignment and domain information |
|---|
| >KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
| >PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope | Back alignment and domain information |
|---|
| >PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin [] | Back alignment and domain information |
|---|
| >PRK11281 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
| >PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription | Back alignment and domain information |
|---|
| >PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells | Back alignment and domain information |
|---|
| >PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion [] | Back alignment and domain information |
|---|
| >PF15397 DUF4618: Domain of unknown function (DUF4618) | Back alignment and domain information |
|---|
| >TIGR02977 phageshock_pspA phage shock protein A | Back alignment and domain information |
|---|
| >KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
| >COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch | Back alignment and domain information |
|---|
| >PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) [] | Back alignment and domain information |
|---|
| >PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope | Back alignment and domain information |
|---|
| >KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
| >PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion | Back alignment and domain information |
|---|
| >COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >KOG2412 consensus Nuclear-export-signal (NES)-containing protein/polyadenylated-RNA export factor [RNA processing and modification] | Back alignment and domain information |
|---|
| >PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown | Back alignment and domain information |
|---|
| >PRK09039 hypothetical protein; Validated | Back alignment and domain information |
|---|
| >PF06248 Zw10: Centromere/kinetochore Zw10; InterPro: IPR009361 Zeste white 10 (ZW10) was initially identified as a mitotic checkpoint protein involved in chromosome segregation, and then implicated in targeting cytoplasmic dynein and dynactin to mitotic kinetochores, but it is also important in non-dividing cells | Back alignment and domain information |
|---|
| >smart00787 Spc7 Spc7 kinetochore protein | Back alignment and domain information |
|---|
| >KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription] | Back alignment and domain information |
|---|
| >PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants | Back alignment and domain information |
|---|
| >PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function | Back alignment and domain information |
|---|
| >TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family | Back alignment and domain information |
|---|
| >PRK04778 septation ring formation regulator EzrA; Provisional | Back alignment and domain information |
|---|
| >KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton] | Back alignment and domain information |
|---|
| >PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
| >PRK10884 SH3 domain-containing protein; Provisional | Back alignment and domain information |
|---|
| >COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p | Back alignment and domain information |
|---|
| >PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes | Back alignment and domain information |
|---|
| >KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown] | Back alignment and domain information |
|---|
| >COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking | Back alignment and domain information |
|---|
| >PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5 | Back alignment and domain information |
|---|
| >PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT) | Back alignment and domain information |
|---|
| >TIGR02680 conserved hypothetical protein TIGR02680 | Back alignment and domain information |
|---|
| >KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only] | Back alignment and domain information |
|---|
| >PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription | Back alignment and domain information |
|---|
| >PF15066 CAGE1: Cancer-associated gene protein 1 family | Back alignment and domain information |
|---|
| >PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology | Back alignment and domain information |
|---|
| >TIGR01005 eps_transp_fam exopolysaccharide transport protein family | Back alignment and domain information |
|---|
| >PRK01156 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >PF02845 CUE: CUE domain; InterPro: IPR003892 This domain may be involved in binding ubiquitin-conjugating enzymes (UBCs) | Back alignment and domain information |
|---|
| >KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown] | Back alignment and domain information |
|---|
| >COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only] | Back alignment and domain information |
|---|
| >smart00546 CUE Domain that may be involved in binding ubiquitin-conjugating enzymes (UBCs) | Back alignment and domain information |
|---|
| >TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD | Back alignment and domain information |
|---|
| >TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein | Back alignment and domain information |
|---|
| >PF13904 DUF4207: Domain of unknown function (DUF4207) | Back alignment and domain information |
|---|
| >PRK10246 exonuclease subunit SbcC; Provisional | Back alignment and domain information |
|---|
| >PRK10698 phage shock protein PspA; Provisional | Back alignment and domain information |
|---|
| >PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89 | Back alignment and domain information |
|---|
| >PRK10246 exonuclease subunit SbcC; Provisional | Back alignment and domain information |
|---|
| >PRK12704 phosphodiesterase; Provisional | Back alignment and domain information |
|---|
| >PF05615 THOC7: Tho complex subunit 7; InterPro: IPR008501 The Tho complex (THOC) is involved in transcription elongation and mRNA export from the nucleus [] | Back alignment and domain information |
|---|
| >PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril | Back alignment and domain information |
|---|
| >TIGR00618 sbcc exonuclease SbcC | Back alignment and domain information |
|---|
| >PF13166 AAA_13: AAA domain | Back alignment and domain information |
|---|
| >PF15369 KIAA1328: Uncharacterised protein KIAA1328 | Back alignment and domain information |
|---|
| >KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
Score = 64.9 bits (158), Expect = 4e-11
Identities = 32/176 (18%), Positives = 68/176 (38%), Gaps = 5/176 (2%)
Query: 370 QKDEIVVTMLHQIKDLERQVKERKEWAHQKAMQAARKLSNDL-TELKMLRMEREETQRLK 428
Q + + + + + E H + + L L E ++ E RL
Sbjct: 860 QAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLA 919
Query: 429 KGKQTLEDTTMKRLSEMENALRKASGQVDRANAAVRRLETENAEIRAEMEASKLSAAESV 488
KQ LE + L EME + + + + A ++++ + ++ ++E + + +
Sbjct: 920 AKKQELE----EILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQ 975
Query: 489 TTCLEVAKREKKCLKRLLAWEKQKAKLQEEIANEKEKIKELQQCLARIQQDQKETE 544
+ + KK +L E Q KL +E +E++ +L LA ++ K
Sbjct: 976 LEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLT 1031
|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
| >2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861 | Back alignment and structure |
|---|
| >2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861 | Back alignment and structure |
|---|
| >1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284 | Back alignment and structure |
|---|
| >1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284 | Back alignment and structure |
|---|
| >1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284 | Back alignment and structure |
|---|
| >1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A* Length = 995 | Back alignment and structure |
|---|
| >2xs1_A Programmed cell death 6-interacting protein; protein transport-viral protein complex, cell cycle; 2.30A {Homo sapiens} PDB: 2xs8_A 2oev_A 2r05_A 2r02_A 2r03_A 2oex_A 2ojq_A Length = 704 | Back alignment and structure |
|---|
| >2xs1_A Programmed cell death 6-interacting protein; protein transport-viral protein complex, cell cycle; 2.30A {Homo sapiens} PDB: 2xs8_A 2oev_A 2r05_A 2r02_A 2r03_A 2oex_A 2ojq_A Length = 704 | Back alignment and structure |
|---|
| >2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A Length = 155 | Back alignment and structure |
|---|
| >2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1 Length = 154 | Back alignment and structure |
|---|
| >2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1 Length = 147 | Back alignment and structure |
|---|
| >1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A* Length = 592 | Back alignment and structure |
|---|
| >2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus} Length = 189 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 573 | |||
| 1c1g_A | 284 | Tropomyosin; contractIle protein; 7.00A {Sus scrof | 97.19 | |
| 4gkw_A | 167 | Spindle assembly abnormal protein 6; double helix, | 97.08 | |
| 1c1g_A | 284 | Tropomyosin; contractIle protein; 7.00A {Sus scrof | 97.0 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 96.84 | |
| 2dfs_A | 1080 | Myosin-5A; myosin-V, inhibited state, cryoelectron | 96.71 | |
| 2efr_A | 155 | General control protein GCN4 and tropomyosin 1 Al; | 96.67 | |
| 2dfs_A | 1080 | Myosin-5A; myosin-V, inhibited state, cryoelectron | 96.48 | |
| 1i84_S | 1184 | Smooth muscle myosin heavy chain; muscle protein, | 96.27 | |
| 1i84_S | 1184 | Smooth muscle myosin heavy chain; muscle protein, | 95.97 | |
| 3oja_A | 487 | Leucine-rich immune molecule 1; coiled-coil, helix | 94.83 | |
| 3na7_A | 256 | HP0958; flagellar biogenesis, flagellum export, C4 | 94.44 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 93.77 | |
| 3i00_A | 120 | HIP-I, huntingtin-interacting protein 1; transcrip | 92.99 | |
| 2ocy_A | 154 | RAB guanine nucleotide exchange factor SEC2; RAB, | 91.57 | |
| 3vkg_A | 3245 | Dynein heavy chain, cytoplasmic; AAA+ protein, mol | 91.57 | |
| 1f5n_A | 592 | Interferon-induced guanylate-binding protein 1; GB | 91.4 | |
| 2b9c_A | 147 | Striated-muscle alpha tropomyosin; alpha-helix, co | 91.3 | |
| 3na7_A | 256 | HP0958; flagellar biogenesis, flagellum export, C4 | 91.07 | |
| 3o0z_A | 168 | RHO-associated protein kinase 1; coiled-coil, tran | 89.97 | |
| 2v71_A | 189 | Nuclear distribution protein NUDE-like 1; developm | 89.47 | |
| 3vkg_A | 3245 | Dynein heavy chain, cytoplasmic; AAA+ protein, mol | 89.35 | |
| 3iox_A | 497 | AGI/II, PA; alpha helix, PPII helix, supersandwich | 85.89 | |
| 3mq7_A | 121 | Bone marrow stromal antigen 2; HIV, antiviral prot | 85.79 | |
| 1otr_A | 49 | Protein CUE2; protein-protein complex, cell cycle; | 84.27 | |
| 2i1j_A | 575 | Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, | 83.55 | |
| 2fxo_A | 129 | Myosin heavy chain, cardiac muscle beta isoform; c | 82.7 | |
| 1m1j_B | 464 | Fibrinogen beta chain; coiled coils, disulfide rin | 80.83 | |
| 1ic2_A | 81 | Tropomyosin alpha chain, skeletal muscle; alpha-he | 80.43 |
| >1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A | Back alignment and structure |
|---|
Probab=97.19 E-value=0.14 Score=47.23 Aligned_cols=10 Identities=30% Similarity=0.199 Sum_probs=3.7
Q ss_pred HHHHHHHHhh
Q 008232 411 LTELKMLRME 420 (573)
Q Consensus 411 ~~ELk~LR~E 420 (573)
..++..++.+
T Consensus 47 ~~~~~~~~~~ 56 (284)
T 1c1g_A 47 QKKLKATEDE 56 (284)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
|
| >4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans} | Back alignment and structure |
|---|
| >1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A | Back alignment and structure |
|---|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} | Back alignment and structure |
|---|
| >2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A | Back alignment and structure |
|---|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
| >3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori} | Back alignment and structure |
|---|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
| >3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A | Back alignment and structure |
|---|
| >2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1 | Back alignment and structure |
|---|
| >3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* | Back alignment and structure |
|---|
| >1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A* | Back alignment and structure |
|---|
| >2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1 | Back alignment and structure |
|---|
| >3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori} | Back alignment and structure |
|---|
| >3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens} | Back alignment and structure |
|---|
| >2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus} | Back alignment and structure |
|---|
| >3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* | Back alignment and structure |
|---|
| >3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A | Back alignment and structure |
|---|
| >3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A | Back alignment and structure |
|---|
| >1otr_A Protein CUE2; protein-protein complex, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.4 | Back alignment and structure |
|---|
| >2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A | Back alignment and structure |
|---|
| >2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A | Back alignment and structure |
|---|
| >1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B* | Back alignment and structure |
|---|
| >1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1 | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 573 | ||||
| d2es4d1 | 280 | a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB) | 3e-05 | |
| d1f5na1 | 300 | a.114.1.1 (A:284-583) Interferon-induced guanylate | 5e-04 |
| >d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 300 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 573 | |||
| d2ap3a1 | 185 | Hypothetical protein MW0975 (SA0943) {Staphylococc | 85.18 |
| >d2ap3a1 a.24.27.1 (A:12-196) Hypothetical protein MW0975 (SA0943) {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Four-helical up-and-down bundle superfamily: MW0975(SA0943)-like family: MW0975(SA0943)-like domain: Hypothetical protein MW0975 (SA0943) species: Staphylococcus aureus [TaxId: 1280]
Probab=85.18 E-value=7.5 Score=30.73 Aligned_cols=25 Identities=20% Similarity=0.434 Sum_probs=8.3
Q ss_pred HHHHHHHHHhhhhhhhhhhHHHHHH
Q 008232 442 LSEMENALRKASGQVDRANAAVRRL 466 (573)
Q Consensus 442 LsEmEnAl~kas~QldrAna~vrrL 466 (573)
+.+....+..+..+++.+.....++
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (185)
T d2ap3a1 71 FEKEEDAIKKSEQDFKKAKSHVDNI 95 (185)
T ss_dssp HHHHHHHHHHHHHHHTTC-----CC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444333
|