Citrus Sinensis ID: 008252

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570--
MAYYSFWLARLRSSSKSILSSLRTSKFSTQNTRTRTLITLSSDNSSRNGTPFQLFSASLLPLALAASAGSLAMQSQTHPSLCDSSALDSRDVNIGGKGSTEYVVKGSHKEIPQELVDELKAICQDDMTMDYEERYIHGKPQNSFHKAVNIPDIIVFPRSEDEVSKIVKCCDKHKVPIIPYGGATSIEGHTLSPNGGVCIDLSLMKSVKALHIEDMDVVVEPGIGWMELNEYLEPYGLFFPLDPGPGATIGGMCATRCSGSLAVRYGTMRDNVINLKVVLANGDVVKTASRARKSAAGYDLTRLIIGSEGTLGIITEVTLRLQKIPQHSVVATCNFPTIKDAADVAIATMLSGIQVSRVELLDEVQVRAVNIANGKNLPELPTLMFEFIGTQAYSHEQTLIVQKIVSEHNGTDFIFAEDPEAKKELWKMRKEALWACFAMEPSFEAMISDVCVPLSCLAELISRSKKELDASPLICTVIAHAGDGNFHTVILFDPSKEEDRQEAERLNRFMVHTALSMEGTCTGEHGIGTGKMKYLEKELGTGALETMKRIKVALDPNNIMNPGKLIPPHICF
cccHHHHHHHHHccHHHHHHHHcccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHccccccccHHHHHHHcccccccccccccccEEEEcccHHHHHHHHHHHHcccccEEEcccccccccccccccccEEEEcccccccEEEccccccEEEcccccHHHHHHHHccccccccccccccccHHHHHHccccccccccccccccEEEEEEEEcccccEEEcccccccccccccccccccccccHHHHHHHHHHcccccccccEEEEEEcccHHHHHHHHHHHHHccccccccccccHHHHHHHHHHcccccccccEEEEEEEccHHHHHHHHHHHHHHHHHccccEEEEcccHHHHHHHHHHHHHHHHHHHHHcccccccccEEEEcccHHHHHHHHHHHHHHHcccccccEEEccccccccccccccccHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHcHHHHHHHHHHHHHccccccccccccccccccc
cccHHHHHHHHHHHccHHHHcccccHHcccccccccEEEEEcccccccccccccccccHHHHHHHHHHHHHHHcccccccccccccccccccEEccccccHHccccccccccHHHHHHHHHHHcccccccHHHHHHHcccccccccccccccEEEEcccHHHHHHHHHHHHHccccEEEcccccccccccccccccEEEEHHHHHHEEEEcHHccEEEEcccHHHHHHHHHHHHccccccccccccccccccHccccccccEEEEcccHHHEEEEEEEEccccEEEEccccccccccccHHHEEEcccccHEEEEEEEEEEccccHHHHHHHcccccHHHHHHHHHHHHHcccccEEEEEccHHHHHHHHHHHccccccccEEEEEEcccHHHHHHHHHHHHHHHHHcccccEEEcccHHHHHHHHHHHHHHHHHHHHHcccccEEEcccEccHHHHHHHHHHHHHHHHHccccEEEEEEccccccEEEEEEccccHHHHHHHHHHHHHHHHHHHHccccccccccccHccHHHHHHHHcHHHHHHHHHHHHHccccccccccccccccccc
MAYYSFWLARLRSSSKSILSSLrtskfstqntrtRTLITlssdnssrngtpfqlfSASLLPLALAASagslamqsqthpslcdssaldsrdvniggkgsteyvvkgshkeiPQELVDELKAICQddmtmdyeeryihgkpqnsfhkavnipdiivfprsedevsKIVKccdkhkvpiipyggatsieghtlspnggvcidLSLMKSVKALHIEDMDVVVEPGIGWMELNEylepyglffpldpgpgatiggmcatrcsgSLAVRYGTMRDNVINLKVVLANGDVVKTASRARksaagydltrliigsegtlgIITEVTLRLqkipqhsvvatcnfptikdAADVAIATMLSGIQVSRVELLDEVQVRAVNiangknlpelptlMFEFIGTQAYSHEQTLIVQKIVSehngtdfifaedPEAKKELWKMRKEALWACFAMEPSFEAMISDVCVPLSCLAELISRSkkeldaspliCTVIahagdgnfhtvilfdpskeedRQEAERLNRFMVHTALSmegtctgehgigtgkMKYLEKELGTGALETMKRIKValdpnnimnpgklipphicf
MAYYSFWLARLRSSSKSILSslrtskfstqntrtrtlitlssdnssrnGTPFQLFSASLLPLALAASAGSLAMQSQTHPSLCDSSALDSRDVNIGGKGSTEYVVKGSHKEIPQELVDELKAICQDDMTMDYEERYIHgkpqnsfhkavNIPDIIVFPRSEDEVSKIVKCCDKHKVPIIPYGGATSIEGHTLSPNGGVCIDLSLMKSVKALHIEDMDVVVEPGIGWMELNEYLEPYGLFFPLDPGPGATIGGMCATRCSGSLAVRYGTMRDNVINLKVVlangdvvktasrarksaagydltrliigsegtLGIITEVTLRLQKIPQHSVVATCNFPTIKDAADVAIATMLSGIQVSRVELLDEVQVRAVNiangknlpelPTLMFEFIGTQAYSHEQTLIVQKIVSEHNGTDFIFAEDPEAKKELWKMRKEALWACFAMEPSFEAMISDVCVPLSCLAELISRSKKELDASPLICTVIAHAGDGNFHTVILFDPSKEEDRQEAERLNRFMVHTALSMEGTCTGEHGIGTGKMKYLEKELGTGALETMKRIKValdpnnimnpgklipphicf
MAYYSFWLArlrsssksilsslrtsKFSTQNTRTRTLITLSSDNSSRNGTPFQlfsasllplalaasagslaMQSQTHPSLCDSSALDSRDVNIGGKGSTEYVVKGSHKEIPQELVDELKAICQDDMTMDYEERYIHGKPQNSFHKAVNIPDIIVFPRSEDEVSKIVKCCDKHKVPIIPYGGATSIEGHTLSPNGGVCIDLSLMKSVKALHIEDMDVVVEPGIGWMELNEYLEPYGLFFPLDPGPGATIGGMCATRCSGSLAVRYGTMRDNVINLKVVLANGDVVKTASRARKSAAGYDLTRLIIGSEGTLGIITEVTLRLQKIPQHSVVATCNFPTIKDAADVAIATMLSGIQVSRVELLDEVQVRAVNIANGKNLPELPTLMFEFIGTQAYSHEQTLIVQKIVSEHNGTDFIFAEDPEAKKELWKMRKEALWACFAMEPSFEAMISDVCVPLSCLAELISRSKKELDASPLICTVIAHAGDGNFHTVILFDPSKEEDRQEAERLNRFMVHTALSMEGTCTGEHGIGTGKMKYLEKELGTGALETMKRIKVALDPNNIMNPGKLIPPHICF
**YYSFWLARL*****************************************QLFSASLLPLALA************************************YVVKG***EIPQELVDELKAICQDDMTMDYEERYIHGKPQNSFHKAVNIPDIIVFPRSEDEVSKIVKCCDKHKVPIIPYGGATSIEGHTLSPNGGVCIDLSLMKSVKALHIEDMDVVVEPGIGWMELNEYLEPYGLFFPLDPGPGATIGGMCATRCSGSLAVRYGTMRDNVINLKVVLANGDVVKTASRARKSAAGYDLTRLIIGSEGTLGIITEVTLRLQKIPQHSVVATCNFPTIKDAADVAIATMLSGIQVSRVELLDEVQVRAVNIANGKNLPELPTLMFEFIGTQAYSHEQTLIVQKIVSEHNGTDFIFAEDPEAKKELWKMRKEALWACFAMEPSFEAMISDVCVPLSCLAELISRSKKELDASPLICTVIAHAGDGNFHTVILFD*************NRFMVHTALSMEGTCTGEHGIGTGKMKYLEKELGTGALETMKRIKVALDPNNIM************
********************************************************ASLLPLALAASAGSLAMQSQ*************************************ELVDELKAICQDDMTMDYEERYIHGKPQNSFHKAVNIPDIIVFPRSEDEVSKIVKCCDKHKVPIIPYGGATSIEGHTLSPNGGVCIDLSLMKSVKALHIEDMDVVVEPGIGWMELNEYLEPYGLFFPLDPGPGATIGGMCATRCSGSLAVRYGTMRDNVINLKVVLANGDVVKTASRARKSAAGYDLTRLIIGSEGTLGIITEVTLRLQKIPQHSVVATCNFPTIKDAADVAIATMLSGIQVSRVELLDEVQVRAVNIANGKNLPELPTLMFEFIGTQAYSHEQTLIVQKIVSEHNGTDFIFAEDPEAKKELWKMRKEALWACFAMEPSFEAMISDVCVPLSCLAELISRSKKELDASPLICTVIAHAGDGNFHTVILFDPSKEEDRQEAERLNRFMVHTALSMEGTCTGEHGIGTGKMKYLEKELGTGALETMKRIKVALDPNNIMNPGKLIPPHICF
MAYYSFWLARLRSSSKSILSSLRTSKFSTQNTRTRTLITLSSDNSSRNGTPFQLFSASLLPLALAASA***************SSALDSRDVNIGGKGSTEYVVKGSHKEIPQELVDELKAICQDDMTMDYEERYIHGKPQNSFHKAVNIPDIIVFPRSEDEVSKIVKCCDKHKVPIIPYGGATSIEGHTLSPNGGVCIDLSLMKSVKALHIEDMDVVVEPGIGWMELNEYLEPYGLFFPLDPGPGATIGGMCATRCSGSLAVRYGTMRDNVINLKVVLANGDVVKTASRARKSAAGYDLTRLIIGSEGTLGIITEVTLRLQKIPQHSVVATCNFPTIKDAADVAIATMLSGIQVSRVELLDEVQVRAVNIANGKNLPELPTLMFEFIGTQAYSHEQTLIVQKIVSEHNGTDFIFAEDPEAKKELWKMRKEALWACFAMEPSFEAMISDVCVPLSCLAELISRSKKELDASPLICTVIAHAGDGNFHTVILFDPSKEEDRQEAERLNRFMVHTALSMEGTCTGEHGIGTGKMKYLEKELGTGALETMKRIKVALDPNNIMNPGKLIPPHICF
*AYYSFWLARLRSSSKSILSSLRTSKFSTQNTRTRTLITLSSDNSSRNGTPFQLFSASLLPLALAASAGSLAMQSQTHPSLCDSSALDSRDVNIGGKGSTEYVVKGSHKEIPQELVDELKAICQDDMTMDYEERYIHGKPQNSFHKAVNIPDIIVFPRSEDEVSKIVKCCDKHKVPIIPYGGATSIEGHTLSPNGGVCIDLSLMKSVKALHIEDMDVVVEPGIGWMELNEYLEPYGLFFPLDPGPGATIGGMCATRCSGSLAVRYGTMRDNVINLKVVLANGDVVKTASRARKSAAGYDLTRLIIGSEGTLGIITEVTLRLQKIPQHSVVATCNFPTIKDAADVAIATMLSGIQVSRVELLDEVQVRAVNIANGKNLPELPTLMFEFIGTQAYSHEQTLIVQKIVSEHNGTDFIFAEDPEAKKELWKMRKEALWACFAMEPSFEAMISDVCVPLSCLAELISRSKKELDASPLICTVIAHAGDGNFHTVILFDPSKEEDRQEAERLNRFMVHTALSMEGTCTGEHGIGTGKMKYLEKELGTGALETMKRIKVALDPNNIMNPGKLIPPHICF
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iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MAYYSFWLARLRSSSKSILSSLRTSKFSTQNTRTRTLITLSSDNSSRNGTPFQLFSASLLPLALAASAGSLAMQSQTHPSLCDSSALDSRDVNIGGKGSTEYVVKGSHKEIPQELVDELKAICQDDMTMDYEERYIHGKPQNSFHKAVNIPDIIVFPRSEDEVSKIVKCCDKHKVPIIPYGGATSIEGHTLSPNGGVCIDLSLMKSVKALHIEDMDVVVEPGIGWMELNEYLEPYGLFFPLDPGPGATIGGMCATRCSGSLAVRYGTMRDNVINLKVVLANGDVVKTASRARKSAAGYDLTRLIIGSEGTLGIITEVTLRLQKIPQHSVVATCNFPTIKDAADVAIATMLSGIQVSRVELLDEVQVRAVNIANGKNLPELPTLMFEFIGTQAYSHEQTLIVQKIVSEHNGTDFIFAEDPEAKKELWKMRKEALWACFAMEPSFEAMISDVCVPLSCLAELISRSKKELDASPLICTVIAHAGDGNFHTVILFDPSKEEDRQEAERLNRFMVHTALSMEGTCTGEHGIGTGKMKYLEKELGTGALETMKRIKVALDPNNIMNPGKLIPPHICF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query572 2.2.26 [Sep-21-2011]
Q94AX4567 D-lactate dehydrogenase [ yes no 0.977 0.985 0.759 0.0
Q7TNG8484 Probable D-lactate dehydr yes no 0.809 0.956 0.430 1e-107
Q12627576 D-lactate dehydrogenase [ yes no 0.846 0.840 0.409 1e-104
Q86WU2507 Probable D-lactate dehydr yes no 0.809 0.913 0.396 1e-103
P32891587 D-lactate dehydrogenase [ yes no 0.722 0.703 0.429 3e-95
P94535470 Glycolate oxidase subunit yes no 0.720 0.876 0.330 6e-59
P0AEP9499 Glycolate oxidase subunit N/A no 0.725 0.831 0.284 2e-45
P0AEQ0499 Glycolate oxidase subunit yes no 0.725 0.831 0.284 2e-45
Q50685459 Uncharacterized FAD-linke yes no 0.748 0.932 0.278 4e-41
A1L258533 D-2-hydroxyglutarate dehy no no 0.720 0.772 0.282 2e-38
>sp|Q94AX4|DLD_ARATH D-lactate dehydrogenase [cytochrome], mitochondrial OS=Arabidopsis thaliana GN=DLD PE=1 SV=1 Back     alignment and function desciption
 Score =  895 bits (2313), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 426/561 (75%), Positives = 490/561 (87%), Gaps = 2/561 (0%)

Query: 13  SSSKSILSSLRTSKFSTQNTRTRTLITLSSDNSSRNGTPFQLFSASLLPLALAASAGSLA 72
           + SK+ILS LR  +      ++   +T+ S    R   P   +S+SL PLA+AASA S A
Sbjct: 8   ARSKTILSFLRPCRQLHSTPKSTGDVTVLSPVKGRRRLP-TCWSSSLFPLAIAASATSFA 66

Query: 73  -MQSQTHPSLCDSSALDSRDVNIGGKGSTEYVVKGSHKEIPQELVDELKAICQDDMTMDY 131
            +          SSALDSRD+ +GGK STE VVKG +K++P+EL+ +LK I +D++T DY
Sbjct: 67  YLNLSNPSISESSSALDSRDITVGGKDSTEAVVKGEYKQVPKELISQLKTILEDNLTTDY 126

Query: 132 EERYIHGKPQNSFHKAVNIPDIIVFPRSEDEVSKIVKCCDKHKVPIIPYGGATSIEGHTL 191
           +ERY HGKPQNSFHKAVNIPD++VFPRSE+EVSKI+K C+++KVPI+PYGGATSIEGHTL
Sbjct: 127 DERYFHGKPQNSFHKAVNIPDVVVFPRSEEEVSKILKSCNEYKVPIVPYGGATSIEGHTL 186

Query: 192 SPNGGVCIDLSLMKSVKALHIEDMDVVVEPGIGWMELNEYLEPYGLFFPLDPGPGATIGG 251
           +P GGVCID+SLMK VKALH+EDMDV+VEPGIGW+ELNEYLE YGLFFPLDPGPGA+IGG
Sbjct: 187 APKGGVCIDMSLMKRVKALHVEDMDVIVEPGIGWLELNEYLEEYGLFFPLDPGPGASIGG 246

Query: 252 MCATRCSGSLAVRYGTMRDNVINLKVVLANGDVVKTASRARKSAAGYDLTRLIIGSEGTL 311
           MCATRCSGSLAVRYGTMRDNVI+LKVVL NGDVVKTASRARKSAAGYDLTRLIIGSEGTL
Sbjct: 247 MCATRCSGSLAVRYGTMRDNVISLKVVLPNGDVVKTASRARKSAAGYDLTRLIIGSEGTL 306

Query: 312 GIITEVTLRLQKIPQHSVVATCNFPTIKDAADVAIATMLSGIQVSRVELLDEVQVRAVNI 371
           G+ITE+TLRLQKIPQHSVVA CNFPT+KDAADVAIATM+SGIQVSRVELLDEVQ+RA+N+
Sbjct: 307 GVITEITLRLQKIPQHSVVAVCNFPTVKDAADVAIATMMSGIQVSRVELLDEVQIRAINM 366

Query: 372 ANGKNLPELPTLMFEFIGTQAYSHEQTLIVQKIVSEHNGTDFIFAEDPEAKKELWKMRKE 431
           ANGKNL E PTLMFEFIGT+AY+ EQT IVQ+I S+HNG+DF+FAE+PEAKKELWK+RKE
Sbjct: 367 ANGKNLTEAPTLMFEFIGTEAYTREQTQIVQQIASKHNGSDFMFAEEPEAKKELWKIRKE 426

Query: 432 ALWACFAMEPSFEAMISDVCVPLSCLAELISRSKKELDASPLICTVIAHAGDGNFHTVIL 491
           ALWAC+AM P  EAMI+DVCVPLS LAELISRSKKELDAS L+CTVIAHAGDGNFHT I+
Sbjct: 427 ALWACYAMAPGHEAMITDVCVPLSHLAELISRSKKELDASSLLCTVIAHAGDGNFHTCIM 486

Query: 492 FDPSKEEDRQEAERLNRFMVHTALSMEGTCTGEHGIGTGKMKYLEKELGTGALETMKRIK 551
           FDPS EE R+EAERLN FMVH+ALSM+GTCTGEHG+GTGKMKYLEKELG  AL+TMKRIK
Sbjct: 487 FDPSSEEQRREAERLNHFMVHSALSMDGTCTGEHGVGTGKMKYLEKELGIEALQTMKRIK 546

Query: 552 VALDPNNIMNPGKLIPPHICF 572
             LDPN+IMNPGKLIPPH+CF
Sbjct: 547 KTLDPNDIMNPGKLIPPHVCF 567
Catalyzes the stereospecific oxidation of D-lactate to pyruvate. Involved in the detoxification of methylglyoxal and D-lactate, but probably not involved in the metabolization of glycolate.
Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 1EC: .EC: 2EC: .EC: 4
>sp|Q7TNG8|LDHD_MOUSE Probable D-lactate dehydrogenase, mitochondrial OS=Mus musculus GN=Ldhd PE=1 SV=1 Back     alignment and function description
>sp|Q12627|DLD1_KLULA D-lactate dehydrogenase [cytochrome], mitochondrial OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=DLD1 PE=3 SV=2 Back     alignment and function description
>sp|Q86WU2|LDHD_HUMAN Probable D-lactate dehydrogenase, mitochondrial OS=Homo sapiens GN=LDHD PE=1 SV=1 Back     alignment and function description
>sp|P32891|DLD1_YEAST D-lactate dehydrogenase [cytochrome] 1, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=DLD1 PE=1 SV=2 Back     alignment and function description
>sp|P94535|GLCD_BACSU Glycolate oxidase subunit GlcD OS=Bacillus subtilis (strain 168) GN=glcD PE=3 SV=1 Back     alignment and function description
>sp|P0AEP9|GLCD_ECOLI Glycolate oxidase subunit GlcD OS=Escherichia coli (strain K12) GN=glcD PE=3 SV=1 Back     alignment and function description
>sp|P0AEQ0|GLCD_ECOL6 Glycolate oxidase subunit GlcD OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=glcD PE=3 SV=1 Back     alignment and function description
>sp|Q50685|Y2280_MYCTU Uncharacterized FAD-linked oxidoreductase Rv2280 OS=Mycobacterium tuberculosis GN=Rv2280 PE=1 SV=1 Back     alignment and function description
>sp|A1L258|D2HDH_DANRE D-2-hydroxyglutarate dehydrogenase, mitochondrial OS=Danio rerio GN=d2hgdh PE=2 SV=1 Back     alignment and function description

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query572
TAIR|locus:2144093567 AT5G06580 [Arabidopsis thalian 0.867 0.874 0.814 2.4e-227
DICTYBASE|DDB_G0270806554 ldhd "D-lactate dehydrogenase 0.807 0.833 0.468 3.2e-113
ZFIN|ZDB-GENE-030131-6140497 ldhd "lactate dehydrogenase D" 0.790 0.909 0.441 1.7e-105
TIGR_CMR|SPO_0634465 SPO_0634 "oxidoreductase, FAD- 0.725 0.892 0.478 2.5e-104
UNIPROTKB|F1LVD7483 Ldhd "Protein Ldhd" [Rattus no 0.809 0.958 0.434 3e-101
MGI|MGI:106428484 Ldhd "lactate dehydrogenase D" 0.804 0.950 0.433 6.2e-101
ASPGD|ASPL0000035818601 AN9066 [Emericella nidulans (t 0.781 0.743 0.447 7.9e-101
UNIPROTKB|G4MWZ3601 MGG_01202 "D-lactate dehydroge 0.732 0.697 0.470 1.7e-100
ASPGD|ASPL0000030870560 AN8317 [Emericella nidulans (t 0.800 0.817 0.440 1.7e-98
UNIPROTKB|E2RSL6482 LDHD "Uncharacterized protein" 0.788 0.935 0.432 2.8e-98
TAIR|locus:2144093 AT5G06580 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2194 (777.4 bits), Expect = 2.4e-227, P = 2.4e-227
 Identities = 405/497 (81%), Positives = 462/497 (92%)

Query:    77 THPSLCDSS-ALDSRDVNIGGKGSTEYVVKGSHKEIPQELVDELKAICQDDMTMDYEERY 135
             ++PS+ +SS ALDSRD+ +GGK STE VVKG +K++P+EL+ +LK I +D++T DY+ERY
Sbjct:    71 SNPSISESSSALDSRDITVGGKDSTEAVVKGEYKQVPKELISQLKTILEDNLTTDYDERY 130

Query:   136 IHGKPQNSFHKAVNIPDIIVFPRSEDEVSKIVKCCDKHKVPIIPYGGATSIEGHTLSPNG 195
              HGKPQNSFHKAVNIPD++VFPRSE+EVSKI+K C+++KVPI+PYGGATSIEGHTL+P G
Sbjct:   131 FHGKPQNSFHKAVNIPDVVVFPRSEEEVSKILKSCNEYKVPIVPYGGATSIEGHTLAPKG 190

Query:   196 GVCIDLSLMKSVKALHIEDMDVVVEPGIGWMELNEYLEPYGLFFPLDPGPGATIGGMCAT 255
             GVCID+SLMK VKALH+EDMDV+VEPGIGW+ELNEYLE YGLFFPLDPGPGA+IGGMCAT
Sbjct:   191 GVCIDMSLMKRVKALHVEDMDVIVEPGIGWLELNEYLEEYGLFFPLDPGPGASIGGMCAT 250

Query:   256 RCSGSLAVRYGTMRDNVINLKVVLANGDVVKTASRARKSAAGYDLTRLIIGSEGTLGIIT 315
             RCSGSLAVRYGTMRDNVI+LKVVL NGDVVKTASRARKSAAGYDLTRLIIGSEGTLG+IT
Sbjct:   251 RCSGSLAVRYGTMRDNVISLKVVLPNGDVVKTASRARKSAAGYDLTRLIIGSEGTLGVIT 310

Query:   316 EVTLRLQKIPQHSVVATCNFPTIKDAADVAIATMLSGIQVSRVELLDEVQVRAVNIANGK 375
             E+TLRLQKIPQHSVVA CNFPT+KDAADVAIATM+SGIQVSRVELLDEVQ+RA+N+ANGK
Sbjct:   311 EITLRLQKIPQHSVVAVCNFPTVKDAADVAIATMMSGIQVSRVELLDEVQIRAINMANGK 370

Query:   376 NLPELPTLMFEFIGTQAYSHEQTLIVQKIVSEHNGTDFIFAEDPEAKKELWKMRKEALWA 435
             NL E PTLMFEFIGT+AY+ EQT IVQ+I S+HNG+DF+FAE+PEAKKELWK+RKEALWA
Sbjct:   371 NLTEAPTLMFEFIGTEAYTREQTQIVQQIASKHNGSDFMFAEEPEAKKELWKIRKEALWA 430

Query:   436 CFAMEPSFEAMISDVCVPLSCLAELISRSKKELDASPLICTVIAHAGDGNFHTVILFDPS 495
             C+AM P  EAMI+DVCVPLS LAELISRSKKELDAS L+CTVIAHAGDGNFHT I+FDPS
Sbjct:   431 CYAMAPGHEAMITDVCVPLSHLAELISRSKKELDASSLLCTVIAHAGDGNFHTCIMFDPS 490

Query:   496 KEEDRQEAERLNRFMVHTALSMEGTCTGEHGIGTGKMKYLEKELGTGALETMKRIKVALD 555
              EE R+EAERLN FMVH+ALSM+GTCTGEHG+GTGKMKYLEKELG  AL+TMKRIK  LD
Sbjct:   491 SEEQRREAERLNHFMVHSALSMDGTCTGEHGVGTGKMKYLEKELGIEALQTMKRIKKTLD 550

Query:   556 PNNIMNPGKLIPPHICF 572
             PN+IMNPGKLIPPH+CF
Sbjct:   551 PNDIMNPGKLIPPHVCF 567
GO:0003824 "catalytic activity" evidence=IEA
GO:0005739 "mitochondrion" evidence=ISM;IDA
GO:0008762 "UDP-N-acetylmuramate dehydrogenase activity" evidence=IEA
GO:0016491 "oxidoreductase activity" evidence=IEA
GO:0016614 "oxidoreductase activity, acting on CH-OH group of donors" evidence=IEA
GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA;IDA
GO:0055114 "oxidation-reduction process" evidence=IEA
GO:0008891 "glycolate oxidase activity" evidence=IGI
GO:0019154 "glycolate dehydrogenase activity" evidence=IDA
GO:0005524 "ATP binding" evidence=IDA
GO:0004458 "D-lactate dehydrogenase (cytochrome) activity" evidence=IDA
GO:0042802 "identical protein binding" evidence=IPI
GO:0051596 "methylglyoxal catabolic process" evidence=IMP
DICTYBASE|DDB_G0270806 ldhd "D-lactate dehydrogenase (cytochrome)" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-6140 ldhd "lactate dehydrogenase D" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
TIGR_CMR|SPO_0634 SPO_0634 "oxidoreductase, FAD-binding" [Ruegeria pomeroyi DSS-3 (taxid:246200)] Back     alignment and assigned GO terms
UNIPROTKB|F1LVD7 Ldhd "Protein Ldhd" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:106428 Ldhd "lactate dehydrogenase D" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
ASPGD|ASPL0000035818 AN9066 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
UNIPROTKB|G4MWZ3 MGG_01202 "D-lactate dehydrogenase" [Magnaporthe oryzae 70-15 (taxid:242507)] Back     alignment and assigned GO terms
ASPGD|ASPL0000030870 AN8317 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
UNIPROTKB|E2RSL6 LDHD "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q94AX4DLD_ARATH1, ., 1, ., 2, ., 40.75930.97720.9858yesno
Q7TNG8LDHD_MOUSE1, ., 1, ., 2, ., 40.43070.80940.9566yesno
Q12627DLD1_KLULA1, ., 1, ., 2, ., 40.40920.84610.8402yesno
Q86WU2LDHD_HUMAN1, ., 1, ., 2, ., 40.39630.80940.9132yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
4th Layer2.5.1.26LOW CONFIDENCE prediction!
3rd Layer1.1.20.983
3rd Layer2.5.1LOW CONFIDENCE prediction!
4th Layer1.1.2.40.979

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query572
PLN02805555 PLN02805, PLN02805, D-lactate dehydrogenase [cytoc 0.0
COG0277459 COG0277, GlcD, FAD/FMN-containing dehydrogenases [ 1e-122
TIGR00387413 TIGR00387, glcD, glycolate oxidase, subunit GlcD 2e-95
pfam02913247 pfam02913, FAD-oxidase_C, FAD linked oxidases, C-t 4e-70
PRK11230499 PRK11230, PRK11230, glycolate oxidase subunit GlcD 2e-48
pfam01565139 pfam01565, FAD_binding_4, FAD binding domain 5e-43
PRK11282352 PRK11282, glcE, glycolate oxidase FAD binding subu 2e-12
TIGR01678438 TIGR01678, FAD_lactone_ox, sugar 1,4-lactone oxida 2e-11
PLN02465573 PLN02465, PLN02465, L-galactono-1,4-lactone dehydr 8e-10
TIGR01677557 TIGR01677, pln_FAD_oxido, plant-specific FAD-depen 2e-08
TIGR01679419 TIGR01679, bact_FAD_ox, FAD-linked oxidoreductase 8e-06
TIGR01676541 TIGR01676, GLDHase, galactonolactone dehydrogenase 0.001
>gnl|CDD|178402 PLN02805, PLN02805, D-lactate dehydrogenase [cytochrome] Back     alignment and domain information 
 Score = 1033 bits (2672), Expect = 0.0
 Identities = 456/563 (80%), Positives = 509/563 (90%), Gaps = 8/563 (1%)

Query: 10  RLRSSSKSILSSLRTSKFSTQNTRTRTLITLSSDNSSRNGTPFQLFSASLLPLALAASAG 69
           RLRS  ++   +     F           T+++    R   P   +S+SLLPLA+AASAG
Sbjct: 1   RLRSLLRTSRPNRALPSFPKSTLDV----TVTTPVKGRRRLPTS-WSSSLLPLAIAASAG 55

Query: 70  SLAMQSQTHPSLCDSSALDSRDVNIGGKGSTEYVVKGSHKEIPQELVDELKAICQDDMTM 129
           SLA  +Q++PSLCDSS LDSR   +GGKGSTE+VVKG HK +PQEL+DELKAI QD+MT+
Sbjct: 56  SLAYLNQSNPSLCDSSDLDSR---VGGKGSTEFVVKGEHKLVPQELIDELKAILQDNMTL 112

Query: 130 DYEERYIHGKPQNSFHKAVNIPDIIVFPRSEDEVSKIVKCCDKHKVPIIPYGGATSIEGH 189
           DY+ERY HGKPQNSFHKAVNIPD++VFPRSE+EVSKIVK C+K+KVPI+PYGGATSIEGH
Sbjct: 113 DYDERYFHGKPQNSFHKAVNIPDVVVFPRSEEEVSKIVKSCNKYKVPIVPYGGATSIEGH 172

Query: 190 TLSPNGGVCIDLSLMKSVKALHIEDMDVVVEPGIGWMELNEYLEPYGLFFPLDPGPGATI 249
           TL+P+GGVCID+SLMKSVKALH+EDMDVVVEPGIGW+ELNEYLEPYGLFFPLDPGPGATI
Sbjct: 173 TLAPHGGVCIDMSLMKSVKALHVEDMDVVVEPGIGWLELNEYLEPYGLFFPLDPGPGATI 232

Query: 250 GGMCATRCSGSLAVRYGTMRDNVINLKVVLANGDVVKTASRARKSAAGYDLTRLIIGSEG 309
           GGMCATRCSGSLAVRYGTMRDNVI+LKVVL NGDVVKTASRARKSAAGYDLTRL+IGSEG
Sbjct: 233 GGMCATRCSGSLAVRYGTMRDNVISLKVVLPNGDVVKTASRARKSAAGYDLTRLVIGSEG 292

Query: 310 TLGIITEVTLRLQKIPQHSVVATCNFPTIKDAADVAIATMLSGIQVSRVELLDEVQVRAV 369
           TLG+ITEVTLRLQKIPQHSVVA CNFPTIKDAADVAIATMLSGIQVSRVELLDEVQ+RA+
Sbjct: 293 TLGVITEVTLRLQKIPQHSVVAMCNFPTIKDAADVAIATMLSGIQVSRVELLDEVQIRAI 352

Query: 370 NIANGKNLPELPTLMFEFIGTQAYSHEQTLIVQKIVSEHNGTDFIFAEDPEAKKELWKMR 429
           N+ANGKNLPE PTLMFEFIGT+AY+ EQTLIVQKI S+HNG+DF+FAE+PEAKKELWK+R
Sbjct: 353 NMANGKNLPEAPTLMFEFIGTEAYAREQTLIVQKIASKHNGSDFVFAEEPEAKKELWKIR 412

Query: 430 KEALWACFAMEPSFEAMISDVCVPLSCLAELISRSKKELDASPLICTVIAHAGDGNFHTV 489
           KEALWACFAMEP +EAMI+DVCVPLS LAELISRSKKELDASPL+CTVIAHAGDGNFHT+
Sbjct: 413 KEALWACFAMEPKYEAMITDVCVPLSHLAELISRSKKELDASPLVCTVIAHAGDGNFHTI 472

Query: 490 ILFDPSKEEDRQEAERLNRFMVHTALSMEGTCTGEHGIGTGKMKYLEKELGTGALETMKR 549
           ILFDPS+E+ R+EAERLN FMVHTALSMEGTCTGEHG+GTGKMKYLEKELG  AL+TMKR
Sbjct: 473 ILFDPSQEDQRREAERLNHFMVHTALSMEGTCTGEHGVGTGKMKYLEKELGIEALQTMKR 532

Query: 550 IKVALDPNNIMNPGKLIPPHICF 572
           IK ALDPNNIMNPGKLIPPH+CF
Sbjct: 533 IKKALDPNNIMNPGKLIPPHVCF 555

Length = 555
>gnl|CDD|223354 COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion] Back     alignment and domain information
>gnl|CDD|129482 TIGR00387, glcD, glycolate oxidase, subunit GlcD Back     alignment and domain information
>gnl|CDD|217283 pfam02913, FAD-oxidase_C, FAD linked oxidases, C-terminal domain Back     alignment and domain information
>gnl|CDD|183043 PRK11230, PRK11230, glycolate oxidase subunit GlcD; Provisional Back     alignment and domain information
>gnl|CDD|216574 pfam01565, FAD_binding_4, FAD binding domain Back     alignment and domain information
>gnl|CDD|236893 PRK11282, glcE, glycolate oxidase FAD binding subunit; Provisional Back     alignment and domain information
>gnl|CDD|233525 TIGR01678, FAD_lactone_ox, sugar 1,4-lactone oxidases Back     alignment and domain information
>gnl|CDD|215258 PLN02465, PLN02465, L-galactono-1,4-lactone dehydrogenase Back     alignment and domain information
>gnl|CDD|233524 TIGR01677, pln_FAD_oxido, plant-specific FAD-dependent oxidoreductase Back     alignment and domain information
>gnl|CDD|130740 TIGR01679, bact_FAD_ox, FAD-linked oxidoreductase Back     alignment and domain information
>gnl|CDD|130737 TIGR01676, GLDHase, galactonolactone dehydrogenase Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 572
PLN02805555 D-lactate dehydrogenase [cytochrome] 100.0
PRK11230499 glycolate oxidase subunit GlcD; Provisional 100.0
TIGR00387413 glcD glycolate oxidase, subunit GlcD. This protein 100.0
COG0277459 GlcD FAD/FMN-containing dehydrogenases [Energy pro 100.0
KOG1231505 consensus Proteins containing the FAD binding doma 100.0
KOG1232511 consensus Proteins containing the FAD binding doma 100.0
KOG1233613 consensus Alkyl-dihydroxyacetonephosphate synthase 100.0
PRK11183564 D-lactate dehydrogenase; Provisional 100.0
PLN02441525 cytokinin dehydrogenase 100.0
PRK11282352 glcE glycolate oxidase FAD binding subunit; Provis 100.0
TIGR01676541 GLDHase galactonolactone dehydrogenase. This model 100.0
TIGR01678438 FAD_lactone_ox sugar 1,4-lactone oxidases. This mo 100.0
TIGR01677557 pln_FAD_oxido plant-specific FAD-dependent oxidore 100.0
TIGR01679419 bact_FAD_ox FAD-linked oxidoreductase. This model 100.0
PLN02465573 L-galactono-1,4-lactone dehydrogenase 100.0
PF02913248 FAD-oxidase_C: FAD linked oxidases, C-terminal dom 100.0
PF01565139 FAD_binding_4: FAD binding domain This is only a s 99.95
KOG4730518 consensus D-arabinono-1, 4-lactone oxidase [Defens 99.92
PRK13905298 murB UDP-N-acetylenolpyruvoylglucosamine reductase 99.92
PRK14652302 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 99.91
PRK13906307 murB UDP-N-acetylenolpyruvoylglucosamine reductase 99.88
PRK12436305 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 99.88
TIGR00179284 murB UDP-N-acetylenolpyruvoylglucosamine reductase 99.87
PRK13903363 murB UDP-N-acetylenolpyruvoylglucosamine reductase 99.85
PRK14653297 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 99.85
PRK14649295 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 99.81
COG0812291 MurB UDP-N-acetylmuramate dehydrogenase [Cell enve 99.78
PRK14650302 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 99.77
PRK00046334 murB UDP-N-acetylenolpyruvoylglucosamine reductase 99.75
PRK14648354 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 99.72
KOG1262543 consensus FAD-binding protein DIMINUTO [General fu 99.69
PRK14651273 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 99.6
PRK13904257 murB UDP-N-acetylenolpyruvoylglucosamine reductase 99.45
PF09330291 Lact-deh-memb: D-lactate dehydrogenase, membrane b 98.29
PF09265281 Cytokin-bind: Cytokinin dehydrogenase 1, FAD and c 97.69
PF04030259 ALO: D-arabinono-1,4-lactone oxidase ; InterPro: I 97.08
PRK09799258 putative oxidoreductase; Provisional 96.52
PF00941171 FAD_binding_5: FAD binding domain in molybdopterin 96.52
PLN00107257 FAD-dependent oxidoreductase; Provisional 96.48
TIGR03312257 Se_sel_red_FAD probable selenate reductase, FAD-bi 96.01
TIGR02963467 xanthine_xdhA xanthine dehydrogenase, small subuni 95.36
PF0803147 BBE: Berberine and berberine like ; InterPro: IPR0 95.21
PLN02906 1319 xanthine dehydrogenase 91.33
PLN00192 1344 aldehyde oxidase 90.34
PRK09971291 xanthine dehydrogenase subunit XdhB; Provisional 90.29
TIGR03195321 4hydrxCoA_B 4-hydroxybenzoyl-CoA reductase, beta s 89.6
TIGR02969 1330 mam_aldehyde_ox aldehyde oxidase. Members of this 87.72
TIGR03199264 pucC xanthine dehydrogenase C subunit. This gene h 87.43
COG4630493 XdhA Xanthine dehydrogenase, iron-sulfur cluster a 83.68
>PLN02805 D-lactate dehydrogenase [cytochrome] Back     alignment and domain information 
Probab=100.00  E-value=1.1e-91  Score=768.43  Aligned_cols=555  Identities=82%  Similarity=1.280  Sum_probs=484.6

Q ss_pred             HhhhchhhhhccccCCCCCCCcccccccccccCCCCCCCCCCcccccchhhHHHHHHhhccccccccCCCCcccCccccc
Q 008252           10 RLRSSSKSILSSLRTSKFSTQNTRTRTLITLSSDNSSRNGTPFQLFSASLLPLALAASAGSLAMQSQTHPSLCDSSALDS   89 (572)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (572)
                      |+|+.+++.|.+.+++.+...|.+   ++++.+++.++. +|++| |..-++++++.++.+.+.....++++|+.+....
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   75 (555)
T PLN02805          1 RLRSLLRTSRPNRALPSFPKSTLD---VTVTTPVKGRRR-LPTSW-SSSLLPLAIAASAGSLAYLNQSNPSLCDSSDLDS   75 (555)
T ss_pred             CcchhhhhccccccCCCCcccccC---ccccccccCCCC-CCCcc-ccccchHHHHHHHHHHHHhcCcceeecccccccc
Confidence            678899999999998866654421   222333333333 44444 2223445555555444444446667887666666


Q ss_pred             CCcccCCCCcccccccCCCCCCcHHHHHHHHHhcCCCeeeChhhhhhccCCCCccccCCCCCCEEEEcCCHHHHHHHHHH
Q 008252           90 RDVNIGGKGSTEYVVKGSHKEIPQELVDELKAICQDDMTMDYEERYIHGKPQNSFHKAVNIPDIIVFPRSEDEVSKIVKC  169 (572)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~p~~vv~P~s~eeV~~iv~~  169 (572)
                      .   +|+..+.++........++++++++|++++++++.++.++++.|+++..++++....|.+|++|+|++||+++|++
T Consensus        76 ~---~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~v~~~~~~~~~y~~d~~~~~~~~~~P~~Vv~P~s~eeV~~ivk~  152 (555)
T PLN02805         76 R---VGGKGSTEFVVKGEHKLVPQELIDELKAILQDNMTLDYDERYFHGKPQNSFHKAVNIPDVVVFPRSEEEVSKIVKS  152 (555)
T ss_pred             c---ccCccccchhhccccccchHHHHHHHHHhcCCceecCHHHHHHhccCcccccccCCCCCEEEEcCCHHHHHHHHHH
Confidence            5   8999998888888888888899999999999889899888888877655454444579999999999999999999


Q ss_pred             HHhCCCCEEEECCCCCCCCCCCCCCCcEEEEcCCCCCcEEeccCCCeEEEcCCCCHHHHHHHHccCCCccCCCCCCcccc
Q 008252          170 CDKHKVPIIPYGGATSIEGHTLSPNGGVCIDLSLMKSVKALHIEDMDVVVEPGIGWMELNEYLEPYGLFFPLDPGPGATI  249 (572)
Q Consensus       170 a~~~~~~v~~~GgG~s~~g~~~~~~~gvvIdl~~mn~i~~~~~~~~~v~v~aGv~~~~L~~~L~~~Gl~l~~~~~~~~tv  249 (572)
                      |+++++||+|+|||||+.|++++.++|++|||++||+|+++|+++.+|+||||+++.+|+++|.++|+++|.++++.+||
T Consensus       153 a~~~~ipv~prGgGts~~G~~~~~~ggivIdl~~mn~I~~id~~~~~vtVeaGv~~~~L~~~L~~~Gl~~p~~p~~~~TI  232 (555)
T PLN02805        153 CNKYKVPIVPYGGATSIEGHTLAPHGGVCIDMSLMKSVKALHVEDMDVVVEPGIGWLELNEYLEPYGLFFPLDPGPGATI  232 (555)
T ss_pred             HHHCCCcEEEECCCCCCCCCccCCCCEEEEEccCCCCeEEEeCCCCEEEEeCCcCHHHHHHHHHHcCCEeCCCCccccCh
Confidence            99999999999999999999887778999999999999999999999999999999999999999999999999988999


Q ss_pred             cccccccccCCCccccccccceeeeEEEEeeCCcEEEcccccccCcCCccchhhhhcCCCCeEEEEEEEEeeeccccceE
Q 008252          250 GGMCATRCSGSLAVRYGTMRDNVINLKVVLANGDVVKTASRARKSAAGYDLTRLIIGSEGTLGIITEVTLRLQKIPQHSV  329 (572)
Q Consensus       250 GG~v~~~~~G~~~~~yG~~~D~v~~~~vV~~dG~i~~~~~~~~~~~~g~dl~~~~~Gs~G~lGIIt~~tlkl~p~p~~~~  329 (572)
                      ||++++|++|..+.+||.++|+|++++||++||++++++....++..||||+|+++|++|+|||||++|||++|.|+...
T Consensus       233 GG~ia~n~~G~~s~~yG~~~d~V~~levVl~dG~iv~~~~~~~k~~~g~dL~~l~~GseGtLGIIT~~tlrl~p~P~~~~  312 (555)
T PLN02805        233 GGMCATRCSGSLAVRYGTMRDNVISLKVVLPNGDVVKTASRARKSAAGYDLTRLVIGSEGTLGVITEVTLRLQKIPQHSV  312 (555)
T ss_pred             hhHhhCCCcccccCccccHHHhEEEEEEEcCCceEEEecCccccCCCCccHHHHhccCCCceEEEEEEEEEeecCCcceE
Confidence            99999999999999999999999999999999999998777677778999999999999999999999999999999999


Q ss_pred             EEEEecCCHHHHHHHHHHHHHcCCceeeeeeccHHHHHHHHhhcCCCCCCCCceEEEEecChhhHHHHHHHHHHHhhhcC
Q 008252          330 VATCNFPTIKDAADVAIATMLSGIQVSRVELLDEVQVRAVNIANGKNLPELPTLMFEFIGTQAYSHEQTLIVQKIVSEHN  409 (572)
Q Consensus       330 ~~~~~f~~~~~a~~~~~~~~~~~~~~~~~e~~d~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~i~~~~~  409 (572)
                      ..++.|++++++.+++.+++..++.|+++|+||...++.++......+|+.+.+++++.|+++.++++.+.+++++.+++
T Consensus       313 ~~~~~f~~~~~a~~av~~i~~~g~~psa~ElmD~~~~~~~~~~~~~~~p~~~~Ll~e~~g~~~~~~~~~~~~~~i~~~~g  392 (555)
T PLN02805        313 VAMCNFPTIKDAADVAIATMLSGIQVSRVELLDEVQIRAINMANGKNLPEAPTLMFEFIGTEAYAREQTLIVQKIASKHN  392 (555)
T ss_pred             EEEEEcCCHHHHHHHHHHHHhCCCCcEEEEEECHHHHHHHHHhcCCCCCcceEEEEEEecCcHHHHHHHHHHHHHHHhCC
Confidence            99999999999999999988889999999999998887766554445666678999999988877777778888888888


Q ss_pred             cceEEEcCCHHHHHHHHHHHHHHHHHHHhcCCCcceeeeeeeecchhHHHHHHHHHHHhccCCcEEEEEEEecCCceEEE
Q 008252          410 GTDFIFAEDPEAKKELWKMRKEALWACFAMEPSFEAMISDVCVPLSCLAELISRSKKELDASPLICTVIAHAGDGNFHTV  489 (572)
Q Consensus       410 g~~~~~~~~~~~~~~lw~~R~~~~~~~~~~~~~~~~~~~D~~vP~s~l~e~l~~~~~~~~~~~~~~~~~gH~gdG~~h~~  489 (572)
                      +.++.++.++++..++|+.|+..++......+....+..|++||+++++++++.+++.++++++.+.+++|+||||+|++
T Consensus       393 ~~~~~~a~~~~e~~~lW~~R~~~~~~~~~~~~~~~~~~~DvaVP~s~L~e~i~~~~~~~~~~~~~~~~~gHaGdGnlH~~  472 (555)
T PLN02805        393 GSDFVFAEEPEAKKELWKIRKEALWACFAMEPKYEAMITDVCVPLSHLAELISRSKKELDASPLVCTVIAHAGDGNFHTI  472 (555)
T ss_pred             CceEEEeCCHHHHHHHHHHHHHHHHHHhhcCCCCceeEEEEEEEHHHHHHHHHHHHHHHHHcCCeEEEEEEcCCCcEEEE
Confidence            88888888999999999999999888776666555578899999999999999999999999999999999999999999


Q ss_pred             EeeCCCCHHHHHHHHHHHHHHHHHHHhcCCeEEeccccccccHHHHHHhhCHHHHHHHHHHHHhcCCCCCccCCCccCCC
Q 008252          490 ILFDPSKEEDRQEAERLNRFMVHTALSMEGTCTGEHGIGTGKMKYLEKELGTGALETMKRIKVALDPNNIMNPGKLIPPH  569 (572)
Q Consensus       490 i~~~~~~~~~~~~~~~~~~~l~~~~~~~gG~~s~ehGiG~~k~~~l~~~~g~~~~~~~~~lK~~~DP~gIlNPGk~~~~~  569 (572)
                      ++++..++++.++++++.+++++.++++||++|+|||+|..|++|+.+++|++.+++|++||++|||+|||||||+||||
T Consensus       473 i~~~~~~~~~~~~~~~~~~~i~~~~~~~gGsiSgEHGiG~~k~~~l~~~~g~~~~~lm~~IK~a~DP~gILNPGKi~~~~  552 (555)
T PLN02805        473 ILFDPSQEDQRREAERLNHFMVHTALSMEGTCTGEHGVGTGKMKYLEKELGIEALQTMKRIKKALDPNNIMNPGKLIPPH  552 (555)
T ss_pred             eccCCCCHHHHHHHHHHHHHHHHHHHHcCCeEeEECCCChhHHHHHHHhcCHHHHHHHHHHHHHhCcCcCCCCCceeCcc
Confidence            99988788888889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCC
Q 008252          570 ICF  572 (572)
Q Consensus       570 ~~~  572 (572)
                      |||
T Consensus       553 ~~~  555 (555)
T PLN02805        553 VCF  555 (555)
T ss_pred             ccC
Confidence            998

>PRK11230 glycolate oxidase subunit GlcD; Provisional Back     alignment and domain information
>TIGR00387 glcD glycolate oxidase, subunit GlcD Back     alignment and domain information
>COG0277 GlcD FAD/FMN-containing dehydrogenases [Energy production and conversion] Back     alignment and domain information
>KOG1231 consensus Proteins containing the FAD binding domain [Energy production and conversion] Back     alignment and domain information
>KOG1232 consensus Proteins containing the FAD binding domain [Energy production and conversion] Back     alignment and domain information
>KOG1233 consensus Alkyl-dihydroxyacetonephosphate synthase [General function prediction only] Back     alignment and domain information
>PRK11183 D-lactate dehydrogenase; Provisional Back     alignment and domain information
>PLN02441 cytokinin dehydrogenase Back     alignment and domain information
>PRK11282 glcE glycolate oxidase FAD binding subunit; Provisional Back     alignment and domain information
>TIGR01676 GLDHase galactonolactone dehydrogenase Back     alignment and domain information
>TIGR01678 FAD_lactone_ox sugar 1,4-lactone oxidases Back     alignment and domain information
>TIGR01677 pln_FAD_oxido plant-specific FAD-dependent oxidoreductase Back     alignment and domain information
>TIGR01679 bact_FAD_ox FAD-linked oxidoreductase Back     alignment and domain information
>PLN02465 L-galactono-1,4-lactone dehydrogenase Back     alignment and domain information
>PF02913 FAD-oxidase_C: FAD linked oxidases, C-terminal domain; InterPro: IPR004113 Some oxygen-dependent oxidoreductases are flavoproteins that contain a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage Back     alignment and domain information
>PF01565 FAD_binding_4: FAD binding domain This is only a subset of the Pfam family; InterPro: IPR006094 Various enzymes use FAD as a co-factor, most of these enzymes are oxygen-dependent oxidoreductases, containing a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage Back     alignment and domain information
>KOG4730 consensus D-arabinono-1, 4-lactone oxidase [Defense mechanisms] Back     alignment and domain information
>PRK13905 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK14652 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK13906 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK12436 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>TIGR00179 murB UDP-N-acetylenolpyruvoylglucosamine reductase Back     alignment and domain information
>PRK13903 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK14653 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK14649 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>COG0812 MurB UDP-N-acetylmuramate dehydrogenase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PRK14650 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK00046 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK14648 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>KOG1262 consensus FAD-binding protein DIMINUTO [General function prediction only] Back     alignment and domain information
>PRK14651 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK13904 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PF09330 Lact-deh-memb: D-lactate dehydrogenase, membrane binding; InterPro: IPR015409 Members of this entry are predominantly found in prokaryotic D-lactate dehydrogenase, forming the cap-membrane-binding domain, which consists of a large seven-stranded antiparallel beta-sheet flanked on both sides by alpha-helices Back     alignment and domain information
>PF09265 Cytokin-bind: Cytokinin dehydrogenase 1, FAD and cytokinin binding; InterPro: IPR015345 This domain adopts an alpha+beta sandwich structure with an antiparallel beta-sheet, in a ferredoxin-like fold Back     alignment and domain information
>PF04030 ALO: D-arabinono-1,4-lactone oxidase ; InterPro: IPR007173 This domain is specific to D-arabinono-1,4-lactone oxidase 1 Back     alignment and domain information
>PRK09799 putative oxidoreductase; Provisional Back     alignment and domain information
>PF00941 FAD_binding_5: FAD binding domain in molybdopterin dehydrogenase; InterPro: IPR002346 Oxidoreductases, that also bind molybdopterin, have essentially no similarity outside this common domain Back     alignment and domain information
>PLN00107 FAD-dependent oxidoreductase; Provisional Back     alignment and domain information
>TIGR03312 Se_sel_red_FAD probable selenate reductase, FAD-binding subunit Back     alignment and domain information
>TIGR02963 xanthine_xdhA xanthine dehydrogenase, small subunit Back     alignment and domain information
>PF08031 BBE: Berberine and berberine like ; InterPro: IPR012951 This domain is found in the berberine bridge and berberine bridge-like enzymes, which are involved in the biosynthesis of numerous isoquinoline alkaloids Back     alignment and domain information
>PLN02906 xanthine dehydrogenase Back     alignment and domain information
>PLN00192 aldehyde oxidase Back     alignment and domain information
>PRK09971 xanthine dehydrogenase subunit XdhB; Provisional Back     alignment and domain information
>TIGR03195 4hydrxCoA_B 4-hydroxybenzoyl-CoA reductase, beta subunit Back     alignment and domain information
>TIGR02969 mam_aldehyde_ox aldehyde oxidase Back     alignment and domain information
>TIGR03199 pucC xanthine dehydrogenase C subunit Back     alignment and domain information
>COG4630 XdhA Xanthine dehydrogenase, iron-sulfur cluster and FAD-binding subunit A [Nucleotide transport and metabolism] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query572
3pm9_A476 Crystal Structure Of A Putative Dehydrogenase (Rpa1 2e-38
2uuu_A584 Alkyldihydroxyacetonephosphate Synthase In P212121 3e-29
4bc7_A658 Mammalian Alkyldihydroxyacetonephosphate Synthase: 7e-24
4bby_A658 Mammalian Alkyldihydroxyacetonephosphate Synthase: 7e-24
4bca_A658 Mammalian Alkyldihydroxyacetonephosphate Synthase: 7e-24
1wve_A520 P-Cresol Methylhydroxylase: Alteration Of The Struc 2e-08
1dii_A521 Crystal Structure Of P-Cresol Methylhydroxylase At 2e-08
2bvf_A459 Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase Fr 2e-06
1w1k_A560 Structure Of The Octameric Flavoenzyme Vanillyl-Alc 7e-06
1w1m_A560 Structure Of The Octameric Flavoenzyme Vanillyl-alc 7e-06
1w1l_A560 Structure Of The Octameric Flavoenzyme Vanillyl-Alc 8e-06
2vao_A560 Structure Of The Octameric Flavoenzyme Vanillyl-Alc 8e-06
1w1j_A560 Structure Of The Octameric Flavoenzyme Vanillyl-Alc 8e-06
1qlt_A560 Structure Of The H422a Mutant Of The Flavoenzyme Va 1e-05
1e8f_A560 Structure Of The H61t Mutant Of The Flavoenzyme Van 1e-05
1dzn_A560 Asp170ser Mutant Of Vanillyl-Alcohol Oxidase Length 2e-05
1e0y_A560 Structure Of The D170sT457E DOUBLE MUTANT OF VANILL 2e-05
2exr_A524 X-Ray Structure Of Cytokinin OxidaseDEHYDROGENASE ( 2e-05
2yvs_A219 Crystal Structure Of Glycolate Oxidase Subunit Glce 2e-04
3fwa_A497 Structure Of Berberine Bridge Enzyme, C166a Variant 2e-04
3fw8_A495 Structure Of Berberine Bridge Enzyme, C166a Variant 2e-04
4g3t_A403 Mycobacterium Smegmatis Dpre1 - Hexagonal Crystal F 2e-04
3fw7_A498 Structure Of Berberine Bridge Enzyme, H104a Variant 2e-04
4aut_A468 Crystal Structure Of The Tuberculosis Drug Target D 2e-04
3vte_A518 Crystal Structure Of Tetrahydrocannabinolic Acid Sy 3e-04
3fw9_A495 Structure Of Berberine Bridge Enzyme In Complex Wit 3e-04
3d2d_A538 Structure Of Berberine Bridge Enzyme In Complex Wit 4e-04
4ec3_A519 Structure Of Berberine Bridge Enzyme, H174a Variant 4e-04
3gsy_A519 Structure Of Berberine Bridge Enzyme In Complex Wit 4e-04
4fdn_A481 Mycobacterium Tuberculosis Dpre1 In Complex With Ct 5e-04
>pdb|3PM9|A Chain A, Crystal Structure Of A Putative Dehydrogenase (Rpa1076) From Rhodopseudomonas Palustris Cga009 At 2.57 A Resolution Length = 476 Back     alignment and structure 
Iteration: 1

 Score =  156 bits (395), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 125/432 (28%), Positives = 200/432 (46%), Gaps = 27/432 (6%)
Query: 153 IIVFPRSEDEVSKIVKCCDKHKVPIIPYGGATSIEGHTLSPNGGVCIDLSLMKSVKALHI 212
           +++ P S +EV  I K  ++ +V ++P GG T + G     NG V I L     ++ +  
Sbjct: 54  LVLRPGSTEEVVAICKLANEARVALVPQGGNTGLVGGQTPHNGEVVISLKRXDKIREIDT 113
Query: 213 EDMDVVVEPGIGWMELNEYLEPYGLFFPLDPGPGA--TIGGMCATRCSGSLAVRYGTMRD 270
               + VE G     + E        FPL  G     TIGG  +T   G+ A+ YG  RD
Sbjct: 114 SSNTITVEAGAILQRVQEKAAEVDRLFPLSLGAQGSCTIGGNLSTNAGGTAALAYGLARD 173
Query: 271 NVINLKVVLANGDVVKTASRARKSAAGYDLTRLIIGSEGTLGIITEVTLRLQKIPQHSVV 330
             + ++VVLA+G V    S+ +K   GYDL  L IG+EGTLGIIT  TL+L   P+    
Sbjct: 174 XALGVEVVLADGRVXNLLSKLKKDNTGYDLRDLFIGAEGTLGIITAATLKLFPKPRAVET 233
Query: 331 ATCNFPTIKDAAD-VAIATMLSGIQVSRVELLDEVQVR-AVNIANGKNLPELPTLMFEFI 388
           A     +  DA   + IA   +   ++  EL+ E  +  +V  AN ++  E     +  I
Sbjct: 234 AFVGLQSPDDALKLLGIAQGEAAGNLTSFELIAETPLDFSVRHANNRDPLEARYPWYVLI 293
Query: 389 GTQAYSHEQTLIVQKIVSE--HNG--TDFIFAEDPEAKKELWKMRKEALWACFAMEPSFE 444
              +   +    ++ I+     +G   D   A   + ++  WK+R+E      A +P   
Sbjct: 294 ELSSPRDDARAALESILERGFEDGIVVDAAIANSVQQQQAFWKLREE---ISPAQKPEGG 350
Query: 445 AMISDVCVPLSCLAELISRSKKELDASPLICTV----IAHAGDGNFHTVILFDPSKEEDR 500
           ++  D+ VP++ + + I ++   + A  LI         H GDGN H    ++ S+    
Sbjct: 351 SIKHDISVPVAAVPQFIEQANAAVVA--LIPGARPVPFGHLGDGNIH----YNVSQPVGA 404
Query: 501 QEAERLNRF------MVHTALSMEGTCTGEHGIGTGKMKYLEKELGTGALETMKRIKVAL 554
            +AE L R+      +    L + G+ + EHGIG  K   L +     A+E  + IK  L
Sbjct: 405 DKAEFLARWHDVSQVVFEVVLRLGGSISAEHGIGVXKRDELAEVKDKTAIELXRSIKALL 464
Query: 555 DPNNIMNPGKLI 566
           DP+ I NPGK++
Sbjct: 465 DPHGIXNPGKVV 476
>pdb|2UUU|A Chain A, Alkyldihydroxyacetonephosphate Synthase In P212121 Length = 584 Back     alignment and structure
>pdb|4BC7|A Chain A, Mammalian Alkyldihydroxyacetonephosphate Synthase: Arg419his Mutant Length = 658 Back     alignment and structure
>pdb|4BBY|A Chain A, Mammalian Alkyldihydroxyacetonephosphate Synthase: Wild-Type Length = 658 Back     alignment and structure
>pdb|4BCA|A Chain A, Mammalian Alkyldihydroxyacetonephosphate Synthase: Tyr578phe Mutant Length = 658 Back     alignment and structure
>pdb|1WVE|A Chain A, P-Cresol Methylhydroxylase: Alteration Of The Structure Of The Flavoprotein Subunit Upon Its Binding To The Cytochrome Subunit Length = 520 Back     alignment and structure
>pdb|1DII|A Chain A, Crystal Structure Of P-Cresol Methylhydroxylase At 2.5 A Resolution Length = 521 Back     alignment and structure
>pdb|2BVF|A Chain A, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From Arthrobacter Nicotinovorans. Crystal Form 3 (P1) Length = 459 Back     alignment and structure
>pdb|1W1K|A Chain A, Structure Of The Octameric Flavoenzyme Vanillyl-Alcohol Oxidase: Ile238thr Mutant Length = 560 Back     alignment and structure
>pdb|1W1M|A Chain A, Structure Of The Octameric Flavoenzyme Vanillyl-alcohol Oxidase: Glu502gly Mutant Length = 560 Back     alignment and structure
>pdb|1W1L|A Chain A, Structure Of The Octameric Flavoenzyme Vanillyl-Alcohol Oxidase: Phe454tyr Mutant Length = 560 Back     alignment and structure
>pdb|2VAO|A Chain A, Structure Of The Octameric Flavoenzyme Vanillyl-Alcohol Oxidase In Complex With Isoeugenol Length = 560 Back     alignment and structure
>pdb|1W1J|A Chain A, Structure Of The Octameric Flavoenzyme Vanillyl-Alcohol Oxidase: The505ser Mutant Length = 560 Back     alignment and structure
>pdb|1QLT|A Chain A, Structure Of The H422a Mutant Of The Flavoenzyme Vanillyl-Alcohol Oxidase Length = 560 Back     alignment and structure
>pdb|1E8F|A Chain A, Structure Of The H61t Mutant Of The Flavoenzyme Vanillyl-Alcohol Oxidase In The Apo Form Length = 560 Back     alignment and structure
>pdb|1DZN|A Chain A, Asp170ser Mutant Of Vanillyl-Alcohol Oxidase Length = 560 Back     alignment and structure
>pdb|1E0Y|A Chain A, Structure Of The D170sT457E DOUBLE MUTANT OF VANILLYL- Alcohol Oxidase Length = 560 Back     alignment and structure
>pdb|2EXR|A Chain A, X-Ray Structure Of Cytokinin OxidaseDEHYDROGENASE (CKX) FROM Arabidopsis Thaliana At5g21482 Length = 524 Back     alignment and structure
>pdb|2YVS|A Chain A, Crystal Structure Of Glycolate Oxidase Subunit Glce From Thermus Thermophilus Hb8 Length = 219 Back     alignment and structure
>pdb|3FWA|A Chain A, Structure Of Berberine Bridge Enzyme, C166a Variant In Complex With (S)-Reticuline Length = 497 Back     alignment and structure
>pdb|3FW8|A Chain A, Structure Of Berberine Bridge Enzyme, C166a Variant Length = 495 Back     alignment and structure
>pdb|4G3T|A Chain A, Mycobacterium Smegmatis Dpre1 - Hexagonal Crystal Form Length = 403 Back     alignment and structure
>pdb|3FW7|A Chain A, Structure Of Berberine Bridge Enzyme, H104a Variant Length = 498 Back     alignment and structure
>pdb|4AUT|A Chain A, Crystal Structure Of The Tuberculosis Drug Target Decaprenyl-Phosphoryl-Beta-D-Ribofuranose-2- Oxidoreductase (Dpre1) From Mycobacterium Smegmatis Length = 468 Back     alignment and structure
>pdb|3VTE|A Chain A, Crystal Structure Of Tetrahydrocannabinolic Acid Synthase From Cannabis Sativa Length = 518 Back     alignment and structure
>pdb|3FW9|A Chain A, Structure Of Berberine Bridge Enzyme In Complex With (S)-Scoulerine Length = 495 Back     alignment and structure
>pdb|3D2D|A Chain A, Structure Of Berberine Bridge Enzyme In Complex With (S)-Reticuline Length = 538 Back     alignment and structure
>pdb|4EC3|A Chain A, Structure Of Berberine Bridge Enzyme, H174a Variant In Complex With (S)-Reticuline Length = 519 Back     alignment and structure
>pdb|3GSY|A Chain A, Structure Of Berberine Bridge Enzyme In Complex With Dehydroscoulerine Length = 519 Back     alignment and structure
>pdb|4FDN|A Chain A, Mycobacterium Tuberculosis Dpre1 In Complex With Ct325 - Hexagonal Crystal Form Length = 481 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query572
2uuu_A584 Alkyldihydroxyacetonephosphate synthase; transfera 0.0
1wvf_A520 4-cresol dehydrogenase [hydroxylating] flavoprote 0.0
1e8g_A560 Vanillyl-alcohol oxidase; oxidoreductase, flavoenz 1e-151
3pm9_A476 Putative oxidoreductase; putative D-2-hydroxygluta 1e-120
2yvs_A219 Glycolate oxidase subunit GLCE; oxidoreductase; 2. 1e-62
1w1o_A534 Cytokinin dehydrogenase 1; flavin, oxidoreductase, 4e-50
4feh_A481 Oxidoreductase DPRE1; alpha+beta, decaprenylphosph 2e-40
2vfr_A422 Xylitol oxidase, alditol oxidase; FAD, sugar, poly 2e-39
3js8_A540 Cholesterol oxidase; cholsterol, organic solvent s 1e-36
2i0k_A561 Oxidoreductase; MIX alpha beta, covalent FAD, flav 1e-33
2bvf_A459 6-hydroxy-D-nicotine oxidase; autoflavinylation, e 3e-32
2exr_A524 Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin 1e-28
3rja_A473 Carbohydrate oxidase; protein-substrate analogue c 7e-28
3vte_A518 Tetrahydrocannabinolic acid synthase; BI-covalent 9e-28
1zr6_A503 Glucooligosaccharide oxidase; alpha + beta, flavoe 2e-27
3fw9_A495 Reticuline oxidase; BI-covalent flavinylation, N-g 2e-27
3pop_A501 GILR oxidase; FAD binding protein, gilvocarcin, gi 5e-27
2wdx_A523 Putative hexose oxidase; oxidoreductase-antibiotic 2e-26
2ipi_A521 Aclacinomycin oxidoreductase (aknox); anthracyclin 2e-25
2y3s_A530 TAML; oxidoreductase; HET: FAD TIR; 1.67A {Strepto 3e-24
1f0x_A 571 DLDH, D-lactate dehydrogenase; oxidoreductase; HET 3e-23
1f0x_A571 DLDH, D-lactate dehydrogenase; oxidoreductase; HET 9e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-04
3tx1_A322 UDP-N-acetylenolpyruvoylglucosamine reductase; str 1e-06
1hsk_A326 UDP-N-acetylenolpyruvoylglucosamine reductase; pep 3e-06
>2uuu_A Alkyldihydroxyacetonephosphate synthase; transferase, lavoprotein, lipid synthesis, peroxisomal disor; HET: FAD PL3; 1.95A {Dictyostelium discoideum} PDB: 2uuv_A* Length = 584 Back     alignment and structure
 Score =  548 bits (1413), Expect = 0.0
 Identities = 112/503 (22%), Positives = 193/503 (38%), Gaps = 53/503 (10%)

Query: 110 EIPQELVDELKAICQDD-MTMDYEERYIHGK-------PQNSFHKAVNIPDIIVFPRSED 161
           +   E V ELKA    D +  D   R  H          +    +  N PD+IV P S +
Sbjct: 89  KQYPEFVRELKAFFLPDQLKDDKLARITHTFGKSLRDLIRVRIGQVKNAPDLIVLPHSHE 148

Query: 162 EVSKIVKCCDKHKVPIIPYGGATSIEGHTLSPNG---GVCIDLSLMKSVKALHIEDMDVV 218
           EV ++V+   K+ V IIP GG ++I G     +     V ID+  M  V  +   +M   
Sbjct: 149 EVERLVQLAHKYNVVIIPMGGGSNIVGAIEPVSNERFTVSIDMRRMNKVLWVDRREMTAC 208

Query: 219 VEPGIGWMELNEYLEPYGLFFPLDPGPG--ATIGGMCATRCSGSLAVRYGTMRDNVINLK 276
           ++ GI   EL + L   G+    DP     +T+GG  AT  SG  + +YG + D  ++ +
Sbjct: 209 IQVGIMGPELEKQLHKQGVSLGHDPDSFEFSTLGGWLATCSSGHQSDKYGDIEDMAVSFR 268

Query: 277 VVLANGDVVKTASRARKSAAGYDLTRLIIGSEGTLGIITEVTLRLQKIPQHSVVATCNFP 336
            V   G +        +S AG +   +I+GSEGTLGIITE  +++  +PQ        FP
Sbjct: 269 TVTPTGTLELR--NGARSGAGINYKHIILGSEGTLGIITEAVMKVHAVPQAVEYYGFLFP 326

Query: 337 TIKDAADVAIATMLSGIQVSRVELLDEVQVRAVN----------------------IANG 374
           T   A         S +  + + + D  + +                             
Sbjct: 327 TFAHAVSALQQIRSSEVIPTMIRVYDPEETQLSFAWKPSKGAVSEFTSAMVKKYLHYIRS 386

Query: 375 KNLPELPTLMFEFIGTQAYSHEQTLIVQKIVSEHNGTDFIFAEDPEAKKELWKMRKEALW 434
            +   +   +  F G +         V  I+S++       A       + W  ++  L 
Sbjct: 387 FDFKNVCLSIIGFEGPKKVVDFHRTSVFDILSKNAAFGLGSAPG-----KTWAEKRYDLP 441

Query: 435 A--CFAMEPSFEAMISDVCVPLSCLAELISRSK----KELDASPLICTVIAHAGDGNFHT 488
               F ++ +    +++  V  + L  L   +K    K      +   + AH      + 
Sbjct: 442 YIRDFLLDHNMWVDVAETTVSYANLQTLWKDAKQTFVKHFKDQGIPAWICAHISHTYTNG 501

Query: 489 VIL-----FDPSKEEDRQEAERLNRFMVHTALSMEGTCTGEHGIGTGKMKYLEKELGTGA 543
           V L        ++ +D  +     + M        G+ +  HG+G   + ++ +    G 
Sbjct: 502 VCLYFIFASKQNENKDMAQYIEAKKLMTDIIFKYGGSLSHHHGVGYEHVPWMTRYATRGW 561

Query: 544 LETMKRIKVALDPNNIMNPGKLI 566
           +   + +K  +DP +I NP KLI
Sbjct: 562 INVYRSLKETIDPKDICNPRKLI 584
>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprote subunit; flavoprotein, electron-transfer, FAD, oxidoreductase; HET: FAD; 1.30A {Pseudomonas putida} SCOP: d.58.32.1 d.145.1.1 PDB: 1wve_A* 1dii_A* 1diq_A* Length = 520 Back     alignment and structure
>1e8g_A Vanillyl-alcohol oxidase; oxidoreductase, flavoenzyme, specificity; HET: FAD FCR; 2.1A {Penicillium simplicissimum} SCOP: d.58.32.1 d.145.1.1 PDB: 1e8f_A* 1e8h_A* 1qlt_A* 1qlu_A* 1vao_A* 1ahv_A* 1ahz_A* 1ahu_A* 2vao_A* 1w1j_A* 1dzn_A* 1w1l_A* 1e0y_A* 1w1k_A* 1w1m_A* Length = 560 Back     alignment and structure
>3pm9_A Putative oxidoreductase; putative D-2-hydroxyglutarate dehydrogenase, putative D-LACT dehydrogenase; HET: FAD; 2.57A {Rhodopseudomonas palustris} Length = 476 Back     alignment and structure
>2yvs_A Glycolate oxidase subunit GLCE; oxidoreductase; 2.00A {Thermus thermophilus} Length = 219 Back     alignment and structure
>1w1o_A Cytokinin dehydrogenase 1; flavin, oxidoreductase, flavoprotein, FAD; HET: NAG FAD; 1.7A {Zea mays} SCOP: d.58.32.4 d.145.1.1 PDB: 1w1q_A* 1w1r_A* 1w1s_A* 3dq0_A* 2qkn_A* 3c0p_A* 3bw7_A* 2qpm_A* 3kjm_A* Length = 534 Back     alignment and structure
>4feh_A Oxidoreductase DPRE1; alpha+beta, decaprenylphosphoryl-beta-D-RIBO; HET: FAD; 2.04A {Mycobacterium tuberculosis} PDB: 4fdo_A* 4fdn_A* 4fdp_A* 4ff6_A* Length = 481 Back     alignment and structure
>2vfr_A Xylitol oxidase, alditol oxidase; FAD, sugar, polyol, flavin, flavoprotein, oxidoreductase; HET: FAD; 1.1A {Streptomyces coelicolor} PDB: 2vfs_A* 2vft_A* 2vfu_A* 2vfv_A* Length = 422 Back     alignment and structure
>3js8_A Cholesterol oxidase; cholsterol, organic solvent stability, oxygen channel, FAD, flavoprotein, oxidoreductase; HET: FAD SUC; 1.54A {Chromobacterium SP} Length = 540 Back     alignment and structure
>2i0k_A Oxidoreductase; MIX alpha beta, covalent FAD, flavoenzyme; HET: FAD; 1.60A {Brevibacterium sterolicum} SCOP: d.58.32.3 d.145.1.1 PDB: 1i19_A* Length = 561 Back     alignment and structure
>2bvf_A 6-hydroxy-D-nicotine oxidase; autoflavinylation, enantiomeric substrates, flavoenzymes, NI degradation; HET: FAD; 1.92A {Arthrobacter nicotinovorans} PDB: 2bvg_A* 2bvh_A* Length = 459 Back     alignment and structure
>2exr_A Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin oxidase/dehydrogenase, CKX, structura genomics, protein structure initiative; HET: MSE FAD; 1.70A {Arabidopsis thaliana} PDB: 2q4w_A* Length = 524 Back     alignment and structure
>3rja_A Carbohydrate oxidase; protein-substrate analogue complex, FAD binding domain, BERB berberine-like domain, glucooligosaccharide oxidase; HET: FAD NAG ABL TRS; 2.10A {Microdochium nivale} PDB: 3rj8_A* Length = 473 Back     alignment and structure
>3vte_A Tetrahydrocannabinolic acid synthase; BI-covalent flavinylation, oxidoreductase; HET: NAG FAD; 2.75A {Cannabis sativa} Length = 518 Back     alignment and structure
>1zr6_A Glucooligosaccharide oxidase; alpha + beta, flavoenzyme, oxidoreductase; HET: NAG FAD; 1.55A {Acremonium strictum} PDB: 2axr_A* 3e0t_A* 3hsu_A* Length = 503 Back     alignment and structure
>3fw9_A Reticuline oxidase; BI-covalent flavinylation, N-glycosylation, alakloid biosynt oxidoreductase, alkaloid metabolism; HET: FAD SLX NAG MAN; 1.49A {Eschscholzia californica} PDB: 3d2h_A* 3d2d_A* 3d2j_A* 3gsy_A* 3fw8_A* 3fw7_A* 3fwa_A* Length = 495 Back     alignment and structure
>3pop_A GILR oxidase; FAD binding protein, gilvocarcin, gilvocarcin biosynthesis, covalently bound FAD, oxidoreductase; HET: FAD; 1.65A {Streptomyces griseoflavus} PDB: 3pqb_A* Length = 501 Back     alignment and structure
>2wdx_A Putative hexose oxidase; oxidoreductase-antibiotic complex, glycopeptide; HET: FAD GHP 3MY 3FG OMY BMA NAG N1L T55; 2.30A {Nonomuraea SP} PDB: 2wdw_A* Length = 523 Back     alignment and structure
>2ipi_A Aclacinomycin oxidoreductase (aknox); anthracycline, flavoenzyme, twinning, MAD; HET: AKY FAD; 1.65A {Streptomyces galilaeus} Length = 521 Back     alignment and structure
>2y3s_A TAML; oxidoreductase; HET: FAD TIR; 1.67A {Streptomyces SP} PDB: 2y3r_A* 2y08_A* 2y4g_A* Length = 530 Back     alignment and structure
>1f0x_A DLDH, D-lactate dehydrogenase; oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: d.58.32.2 d.145.1.1 Length = 571 Back     alignment and structure
>1f0x_A DLDH, D-lactate dehydrogenase; oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: d.58.32.2 d.145.1.1 Length = 571 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3tx1_A UDP-N-acetylenolpyruvoylglucosamine reductase; structural genomics, center for structural genomics of infec diseases, csgid; HET: FAD; 2.69A {Listeria monocytogenes} Length = 322 Back     alignment and structure
>1hsk_A UDP-N-acetylenolpyruvoylglucosamine reductase; peptidoglycan synthesis, cell WALL, cell division, oxidoreductase, NADP, flavoprotein, FAD; HET: FAD; 2.30A {Staphylococcus aureus} SCOP: d.145.1.2 d.146.1.1 Length = 326 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query572
3pm9_A476 Putative oxidoreductase; putative D-2-hydroxygluta 100.0
4bby_A658 Alkyldihydroxyacetonephosphate synthase, peroxiso; 100.0
2uuu_A584 Alkyldihydroxyacetonephosphate synthase; transfera 100.0
1e8g_A560 Vanillyl-alcohol oxidase; oxidoreductase, flavoenz 100.0
1wvf_A520 4-cresol dehydrogenase [hydroxylating] flavoprote 100.0
1f0x_A571 DLDH, D-lactate dehydrogenase; oxidoreductase; HET 100.0
2exr_A524 Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin 100.0
1w1o_A534 Cytokinin dehydrogenase 1; flavin, oxidoreductase, 100.0
2vfr_A422 Xylitol oxidase, alditol oxidase; FAD, sugar, poly 100.0
2bvf_A459 6-hydroxy-D-nicotine oxidase; autoflavinylation, e 100.0
3tsh_A500 Pollen allergen PHL P 4; flavoprotein, BI-covalent 100.0
3rja_A473 Carbohydrate oxidase; protein-substrate analogue c 100.0
2ipi_A521 Aclacinomycin oxidoreductase (aknox); anthracyclin 100.0
4feh_A481 Oxidoreductase DPRE1; alpha+beta, decaprenylphosph 100.0
1zr6_A503 Glucooligosaccharide oxidase; alpha + beta, flavoe 100.0
3fw9_A495 Reticuline oxidase; BI-covalent flavinylation, N-g 100.0
3pop_A501 GILR oxidase; FAD binding protein, gilvocarcin, gi 100.0
2wdx_A523 Putative hexose oxidase; oxidoreductase-antibiotic 100.0
2y3s_A530 TAML; oxidoreductase; HET: FAD TIR; 1.67A {Strepto 100.0
3vte_A518 Tetrahydrocannabinolic acid synthase; BI-covalent 100.0
2i0k_A561 Oxidoreductase; MIX alpha beta, covalent FAD, flav 99.97
3js8_A540 Cholesterol oxidase; cholsterol, organic solvent s 99.97
1hsk_A326 UDP-N-acetylenolpyruvoylglucosamine reductase; pep 99.97
3tx1_A322 UDP-N-acetylenolpyruvoylglucosamine reductase; str 99.94
3i99_A357 UDP-N-acetylenolpyruvoylglucosamine reductase; str 99.93
1uxy_A340 MURB, uridine diphospho-N-acetylenolpyruvylglucosa 99.92
2gqt_A268 UDP-N-acetylenolpyruvylglucosamine reductase; pept 99.89
2yvs_A219 Glycolate oxidase subunit GLCE; oxidoreductase; 2. 99.86
1ffv_C287 CUTM, flavoprotein of carbon monoxide dehydrogenas 98.29
2w3s_A462 Xanthine dehydrogenase; XO, XDH, GOUT, iron, 2Fe-2 97.65
1n62_C288 Carbon monoxide dehydrogenase medium chain; CODH, 97.3
3nvz_B305 Xanthine dehydrogenase/oxidase; hydroxylase, homod 97.22
1t3q_C288 Quinoline 2-oxidoreductase medium subunit; QOR, mo 95.74
3hrd_C296 Nicotinate dehydrogenase FAD-subunit; selenium lig 92.53
1rm6_B324 4-hydroxybenzoyl-COA reductase beta subunit; xanth 88.54
>3pm9_A Putative oxidoreductase; putative D-2-hydroxyglutarate dehydrogenase, putative D-LACT dehydrogenase; HET: FAD; 2.57A {Rhodopseudomonas palustris} Back     alignment and structure
Probab=100.00  E-value=8.3e-77  Score=645.53  Aligned_cols=455  Identities=27%  Similarity=0.377  Sum_probs=397.1

Q ss_pred             CCCCCcHHHHHHHHHhcCC-CeeeChhhhhhccCCCCccccCCCCCCEEEEcCCHHHHHHHHHHHHhCCCCEEEECCCCC
Q 008252          107 SHKEIPQELVDELKAICQD-DMTMDYEERYIHGKPQNSFHKAVNIPDIIVFPRSEDEVSKIVKCCDKHKVPIIPYGGATS  185 (572)
Q Consensus       107 ~~~~~~~~~~~~L~~~lg~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~vv~P~s~eeV~~iv~~a~~~~~~v~~~GgG~s  185 (572)
                      +...++++++++|++++|. ++.++......|.+++..  +.++.|.+||+|+|++||+++|++|+++++|++|+|||||
T Consensus         9 ~~~~~~~~~~~~L~~~lg~~~v~~~~~~~~~~~~d~~~--~~~~~p~~vv~P~s~eeV~~~v~~a~~~~~pv~~~GgGt~   86 (476)
T 3pm9_A            9 SPVTLSPELIARFTAIVGDKHALTDPLELEAYITEERN--LYRGHSPLVLRPGSTEEVVAICKLANEARVALVPQGGNTG   86 (476)
T ss_dssp             ---CCCHHHHHHHHHHHCGGGEECSHHHHHHHHBCTTC--CCBCCCSCEECCCSHHHHHHHHHHHHHHTCCEEEESSSCC
T ss_pred             CcccCCHHHHHHHHHhcCCCcEecCHHHHHHHhccccc--ccCCCCCEEEecCCHHHHHHHHHHHHHcCCeEEEEeCCCC
Confidence            4456788999999999985 677776655555544322  3457899999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCcEEEEcCCCCCcEEeccCCCeEEEcCCCCHHHHHHHHccCCCccCCCCCC--cccccccccccccCCCcc
Q 008252          186 IEGHTLSPNGGVCIDLSLMKSVKALHIEDMDVVVEPGIGWMELNEYLEPYGLFFPLDPGP--GATIGGMCATRCSGSLAV  263 (572)
Q Consensus       186 ~~g~~~~~~~gvvIdl~~mn~i~~~~~~~~~v~v~aGv~~~~L~~~L~~~Gl~l~~~~~~--~~tvGG~v~~~~~G~~~~  263 (572)
                      +.|++.+.++|++|||++||+|+++|+++.+++||||++|.+|+++|.++|+.+|.+++.  ++||||++++|++|..+.
T Consensus        87 ~~g~~~~~~ggvvIdl~~m~~i~~id~~~~~v~V~aGv~~~~l~~~l~~~Gl~~~~~~~s~~~~tvGG~ia~nagG~~~~  166 (476)
T 3pm9_A           87 LVGGQTPHNGEVVISLKRMDKIREIDTSSNTITVEAGAILQRVQEKAAEVDRLFPLSLGAQGSCTIGGNLSTNAGGTAAL  166 (476)
T ss_dssp             SSSTTCCCSSCEEEECTTCCCEEEEETTTTEEEEETTCBHHHHHHHHHHTTEECCCCCTTTTTCBHHHHHHHTCCCTTHH
T ss_pred             CCCCccCCCCcEEEEeeCCCceEEEcCCCCeEEECCCcCHHHHHHHHHHhCCccCCCCCCCCcEEEccccCCCCCCCccc
Confidence            999988766799999999999999999999999999999999999999999999987654  799999999999999999


Q ss_pred             ccccccceeeeEEEEeeCCcEEEcccccccCcCCccchhhhhcCCCCeEEEEEEEEeeeccccceEEEEEecCCHHHHHH
Q 008252          264 RYGTMRDNVINLKVVLANGDVVKTASRARKSAAGYDLTRLIIGSEGTLGIITEVTLRLQKIPQHSVVATCNFPTIKDAAD  343 (572)
Q Consensus       264 ~yG~~~D~v~~~~vV~~dG~i~~~~~~~~~~~~g~dl~~~~~Gs~G~lGIIt~~tlkl~p~p~~~~~~~~~f~~~~~a~~  343 (572)
                      +||.++|+|++++||++||++++++....++..||||+++++|++|+|||||++|||++|.|+......+.|++++++.+
T Consensus       167 ~yG~~~d~V~~levV~~dG~v~~~~~~~~k~~~g~dl~~l~~Gs~GtlGIIt~~tl~l~p~p~~~~~~~~~~~~~~~a~~  246 (476)
T 3pm9_A          167 AYGLARDMALGVEVVLADGRVMNLLSKLKKDNTGYDLRDLFIGAEGTLGIITAATLKLFPKPRAVETAFVGLQSPDDALK  246 (476)
T ss_dssp             HHCCHHHHEEEEEEECTTSCEEECCCCCSCCCSSCCCHHHHTTSTTSSCEEEEEEEECEECCSEEEEEEEEESCHHHHHH
T ss_pred             ccCcHHHheeEEEEEccCCeEEEcCCcccCCCCCcCHHHHhccCCCCcEEEEEEEEEEeecCceeEEEEEEcCCHHHHHH
Confidence            99999999999999999999999877767788999999999999999999999999999999988888999999999999


Q ss_pred             HHHHHHH-cCCceeeeeeccHHHHHHHHhhcCCCCC--C--CCceEEEEecChhhHHHHHHHHHHHhhhcCc-ceEEEcC
Q 008252          344 VAIATML-SGIQVSRVELLDEVQVRAVNIANGKNLP--E--LPTLMFEFIGTQAYSHEQTLIVQKIVSEHNG-TDFIFAE  417 (572)
Q Consensus       344 ~~~~~~~-~~~~~~~~e~~d~~~~~~~~~~~~~~~~--~--~~~l~~~~~g~~~~~~~~~~~~~~i~~~~~g-~~~~~~~  417 (572)
                      ++.++.. .+..|.++|+||...++.++...+...|  +  .+.|++++.|+++.++++.+.+.+.+.+.+. .+..++.
T Consensus       247 ~~~~~~~~~g~~p~a~El~d~~~~~~~~~~~~~~~~~~~~~~~~llve~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~a~  326 (476)
T 3pm9_A          247 LLGIAQGEAAGNLTSFELIAETPLDFSVRHANNRDPLEARYPWYVLIELSSPRDDARAALESILERGFEDGIVVDAAIAN  326 (476)
T ss_dssp             HHHHHHHHHGGGEEEEEEEEHHHHHHHHHHTTCCCCSSSCCSEEEEEEEEESSSCHHHHHHHHHHHHHHTTCCCEEEECC
T ss_pred             HHHHHHHhcCCCceEEEecCHHHHHHHHhccCCCCCCCccCCeEEEEEEccCcHHHHHHHHHHHHHHHhcCCCcceEEeC
Confidence            9988875 5789999999999998877655433222  2  3478999999887676666666666666554 5788888


Q ss_pred             CHHHHHHHHHHHHHHHHHHHhcCCCcceeeeeeeecchhHHHHHHHHHHHhccC--CcEEEEEEEecCCceEEEEeeCCC
Q 008252          418 DPEAKKELWKMRKEALWACFAMEPSFEAMISDVCVPLSCLAELISRSKKELDAS--PLICTVIAHAGDGNFHTVILFDPS  495 (572)
Q Consensus       418 ~~~~~~~lw~~R~~~~~~~~~~~~~~~~~~~D~~vP~s~l~e~l~~~~~~~~~~--~~~~~~~gH~gdG~~h~~i~~~~~  495 (572)
                      ++++.+++|++|+....+.....+   .+.+|++||+++++++++.+++.++++  ++...+|||+||||+|++++++..
T Consensus       327 ~~~~~~~lW~~R~~~~~~~~~~g~---~~~~Dv~vP~~~l~~~~~~~~~~~~~~~~~~~~~~~gH~gdGnlH~~i~~~~~  403 (476)
T 3pm9_A          327 SVQQQQAFWKLREEISPAQKPEGG---SIKHDISVPVAAVPQFIEQANAAVVALIPGARPVPFGHLGDGNIHYNVSQPVG  403 (476)
T ss_dssp             SHHHHHHHHHHHHTHHHHTGGGCC---EECCEEECCGGGHHHHHHHHHHHHHHHSTTCEEEEEEEGGGTEEEEEEECCTT
T ss_pred             CHHHHHHHHHHHHHHHHHHhhcCC---ceeEEEEeeHHHHHHHHHHHHHHHHHhcCCCeEEEEEEeCCCceEEEEecCCc
Confidence            999999999999987765544332   478999999999999999999999998  899999999999999999998652


Q ss_pred             -CH-HHHHHHHHHHHHHHHHHHhcCCeEEeccccccccHHHHHHhhCHHHHHHHHHHHHhcCCCCCccCCCcc
Q 008252          496 -KE-EDRQEAERLNRFMVHTALSMEGTCTGEHGIGTGKMKYLEKELGTGALETMKRIKVALDPNNIMNPGKLI  566 (572)
Q Consensus       496 -~~-~~~~~~~~~~~~l~~~~~~~gG~~s~ehGiG~~k~~~l~~~~g~~~~~~~~~lK~~~DP~gIlNPGk~~  566 (572)
                       ++ +..++++++.+.+++.++++||++|+|||+|..|++|+..++|++.+++|++||++|||+|||||||+|
T Consensus       404 ~~~~~~~~~~~~~~~~~~~~~~~~gGsis~EHGiG~~k~~~l~~~~~~~~~~~m~~iK~~~DP~~ilNPGki~  476 (476)
T 3pm9_A          404 ADKAEFLARWHDVSQVVFEVVLRLGGSISAEHGIGVMKRDELAEVKDKTAIELMRSIKALLDPHGIMNPGKVV  476 (476)
T ss_dssp             CCHHHHHTTHHHHHHHHHHHHHHTTCBSCSSSCCTTTTHHHHHHHSCHHHHHHHHHHHHHHCTTSCBSTTSCC
T ss_pred             CChHHHHHHHHHHHHHHHHHHHHcCCEEEEcccCchhHHHHHHHhcCHHHHHHHHHHHHHhCcccCCCCCCcC
Confidence             33 346778899999999999999999999999999999999999999999999999999999999999986
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A* Back     alignment and structure
>2uuu_A Alkyldihydroxyacetonephosphate synthase; transferase, lavoprotein, lipid synthesis, peroxisomal disor; HET: FAD PL3; 1.95A {Dictyostelium discoideum} PDB: 2uuv_A* Back     alignment and structure
>1e8g_A Vanillyl-alcohol oxidase; oxidoreductase, flavoenzyme, specificity; HET: FAD FCR; 2.1A {Penicillium simplicissimum} SCOP: d.58.32.1 d.145.1.1 PDB: 1e8f_A* 1e8h_A* 1qlt_A* 1qlu_A* 1vao_A* 1ahv_A* 1ahz_A* 1ahu_A* 2vao_A* 1w1j_A* 1dzn_A* 1w1l_A* 1e0y_A* 1w1k_A* 1w1m_A* Back     alignment and structure
>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprote subunit; flavoprotein, electron-transfer, FAD, oxidoreductase; HET: FAD; 1.30A {Pseudomonas putida} SCOP: d.58.32.1 d.145.1.1 PDB: 1wve_A* 1dii_A* 1diq_A* Back     alignment and structure
>1f0x_A DLDH, D-lactate dehydrogenase; oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: d.58.32.2 d.145.1.1 Back     alignment and structure
>2exr_A Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin oxidase/dehydrogenase, CKX, structura genomics, protein structure initiative; HET: MSE FAD; 1.70A {Arabidopsis thaliana} PDB: 2q4w_A* Back     alignment and structure
>1w1o_A Cytokinin dehydrogenase 1; flavin, oxidoreductase, flavoprotein, FAD; HET: NAG FAD; 1.7A {Zea mays} SCOP: d.58.32.4 d.145.1.1 PDB: 1w1q_A* 1w1r_A* 1w1s_A* 3dq0_A* 2qkn_A* 3c0p_A* 3bw7_A* 2qpm_A* 3kjm_A* Back     alignment and structure
>2vfr_A Xylitol oxidase, alditol oxidase; FAD, sugar, polyol, flavin, flavoprotein, oxidoreductase; HET: FAD; 1.1A {Streptomyces coelicolor} PDB: 2vfs_A* 2vft_A* 2vfu_A* 2vfv_A* Back     alignment and structure
>2bvf_A 6-hydroxy-D-nicotine oxidase; autoflavinylation, enantiomeric substrates, flavoenzymes, NI degradation; HET: FAD; 1.92A {Arthrobacter nicotinovorans} PDB: 2bvg_A* 2bvh_A* Back     alignment and structure
>3tsh_A Pollen allergen PHL P 4; flavoprotein, BI-covalent flavinylation, oxidoreductase, Glu dehydrogenase, N-glycosylation, allergy, dehydrogenase; HET: FDA; 1.90A {Phleum pratense} PDB: 3tsj_A* Back     alignment and structure
>3rja_A Carbohydrate oxidase; protein-substrate analogue complex, FAD binding domain, BERB berberine-like domain, glucooligosaccharide oxidase; HET: FAD NAG ABL TRS; 2.10A {Microdochium nivale} PDB: 3rj8_A* Back     alignment and structure
>2ipi_A Aclacinomycin oxidoreductase (aknox); anthracycline, flavoenzyme, twinning, MAD; HET: AKY FAD; 1.65A {Streptomyces galilaeus} Back     alignment and structure
>4feh_A Oxidoreductase DPRE1; alpha+beta, decaprenylphosphoryl-beta-D-RIBO; HET: FAD; 2.04A {Mycobacterium tuberculosis} PDB: 4fdo_A* 4fdn_A* 4fdp_A* 4ff6_A* 4aut_A* 4f4q_A* 4g3t_A 4g3u_A Back     alignment and structure
>1zr6_A Glucooligosaccharide oxidase; alpha + beta, flavoenzyme, oxidoreductase; HET: NAG FAD; 1.55A {Acremonium strictum} PDB: 2axr_A* 3e0t_A* 3hsu_A* Back     alignment and structure
>3fw9_A Reticuline oxidase; BI-covalent flavinylation, N-glycosylation, alakloid biosynt oxidoreductase, alkaloid metabolism; HET: FAD SLX NAG MAN; 1.49A {Eschscholzia californica} PDB: 3d2h_A* 3d2d_A* 3d2j_A* 3gsy_A* 4ec3_A* 3fw8_A* 3fw7_A* 3fwa_A* Back     alignment and structure
>3pop_A GILR oxidase; FAD binding protein, gilvocarcin, gilvocarcin biosynthesis, covalently bound FAD, oxidoreductase; HET: FAD; 1.65A {Streptomyces griseoflavus} PDB: 3pqb_A* Back     alignment and structure
>2wdx_A Putative hexose oxidase; oxidoreductase-antibiotic complex, glycopeptide; HET: FAD GHP 3MY 3FG OMY BMA NAG N1L T55; 2.30A {Nonomuraea SP} PDB: 2wdw_A* Back     alignment and structure
>2y3s_A TAML; oxidoreductase; HET: FAD TIR; 1.67A {Streptomyces SP} PDB: 2y3r_A* 2y08_A* 2y4g_A* Back     alignment and structure
>3vte_A Tetrahydrocannabinolic acid synthase; BI-covalent flavinylation, oxidoreductase; HET: NAG FAD; 2.75A {Cannabis sativa} Back     alignment and structure
>2i0k_A Oxidoreductase; MIX alpha beta, covalent FAD, flavoenzyme; HET: FAD; 1.60A {Brevibacterium sterolicum} SCOP: d.58.32.3 d.145.1.1 PDB: 1i19_A* Back     alignment and structure
>3js8_A Cholesterol oxidase; cholsterol, organic solvent stability, oxygen channel, FAD, flavoprotein, oxidoreductase; HET: FAD SUC; 1.54A {Chromobacterium SP} Back     alignment and structure
>1hsk_A UDP-N-acetylenolpyruvoylglucosamine reductase; peptidoglycan synthesis, cell WALL, cell division, oxidoreductase, NADP, flavoprotein, FAD; HET: FAD; 2.30A {Staphylococcus aureus} SCOP: d.145.1.2 d.146.1.1 Back     alignment and structure
>3tx1_A UDP-N-acetylenolpyruvoylglucosamine reductase; structural genomics, center for structural genomics of infec diseases, csgid; HET: FAD; 2.69A {Listeria monocytogenes} Back     alignment and structure
>3i99_A UDP-N-acetylenolpyruvoylglucosamine reductase; structural genomics, center for structural of infectious diseases, csgid; HET: FAD; 2.20A {Vibrio cholerae} Back     alignment and structure
>1uxy_A MURB, uridine diphospho-N-acetylenolpyruvylglucosamine reductase; peptidoglycan synthesis, cell WALL, cell division, oxidoreductase, NADP; HET: FAD EPU; 1.80A {Escherichia coli} SCOP: d.145.1.2 d.146.1.1 PDB: 1mbb_A* 1mbt_A* 2q85_A* 2mbr_A* Back     alignment and structure
>2gqt_A UDP-N-acetylenolpyruvylglucosamine reductase; peptidoglycan biosynthesis, enolpyruvyl-UDP-N- acetylglucosamine, flavin adenine dinucleotide; HET: FAD; 1.30A {Thermus caldophilus} PDB: 2gqu_A* Back     alignment and structure
>2yvs_A Glycolate oxidase subunit GLCE; oxidoreductase; 2.00A {Thermus thermophilus} Back     alignment and structure
>1ffv_C CUTM, flavoprotein of carbon monoxide dehydrogenase; hydrolase; HET: ARO PCD FAD; 2.25A {Hydrogenophaga pseudoflava} SCOP: d.87.2.1 d.145.1.3 PDB: 1ffu_C* Back     alignment and structure
>2w3s_A Xanthine dehydrogenase; XO, XDH, GOUT, iron, 2Fe-2S, iron-sulfur, oxidoreductase, purine metabolism, molybdenum cofactor, hypoxanthine; HET: MPN FAD XAN; 2.60A {Rhodobacter capsulatus} PDB: 2w3r_A* 2w54_A* 2w55_A* 1jro_A* 1jrp_A* Back     alignment and structure
>1n62_C Carbon monoxide dehydrogenase medium chain; CODH, molybdenum, molybdopterin, oxidoreductase; HET: CUB MCN FAD; 1.09A {Oligotropha carboxidovorans} SCOP: d.87.2.1 d.145.1.3 PDB: 1n5w_C* 1n61_C* 1n60_C* 1n63_C* 1zxi_C* Back     alignment and structure
>3nvz_B Xanthine dehydrogenase/oxidase; hydroxylase, homodimer, xanthine oxidase, indole-3-aldehyde, oxidoreductase; HET: FAD MTE I3A; 1.60A {Bos taurus} PDB: 3eub_B* 3etr_B* 3ns1_B* 3nrz_B* 3rca_B* 3sr6_B* 3nvw_B* 3nvv_B* 3nvy_B* Back     alignment and structure
>1t3q_C Quinoline 2-oxidoreductase medium subunit; QOR, molybdenum, MCD; HET: FAD MCN; 1.80A {Pseudomonas putida} SCOP: d.87.2.1 d.145.1.3 Back     alignment and structure
>3hrd_C Nicotinate dehydrogenase FAD-subunit; selenium ligand, iron, iron-sulfur, metal-binding, oxidoreductase; HET: MCN FAD; 2.20A {Eubacterium barkeri} Back     alignment and structure
>1rm6_B 4-hydroxybenzoyl-COA reductase beta subunit; xanthine oxidase family, dimer heterotrimers, oxidoreductase; HET: PCD FAD SF4 EPE; 1.60A {Thauera aromatica} SCOP: d.87.2.1 d.145.1.3 PDB: 1sb3_B* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 572
d1e8ga1287 d.58.32.1 (A:274-560) Vanillyl-alcohol oxidase {Fu 1e-63
d1wvfa1279 d.58.32.1 (A:243-521) Flavoprotein subunit of p-cr 4e-53
d1f0xa1294 d.58.32.2 (A:274-567) D-lactate dehydrogenase {Esc 8e-39
d2i0ka2216 d.145.1.1 (A:58-273) Cholesterol oxidase {Brevibac 1e-32
d1e8ga2268 d.145.1.1 (A:6-273) Vanillyl-alcohol oxidase {Fung 2e-32
d1w1oa2206 d.145.1.1 (A:40-245) Cytokinin dehydrogenase 1 {Ma 2e-29
d1wvfa2236 d.145.1.1 (A:7-242) Flavoprotein subunit of p-cres 2e-28
d1f0xa2265 d.145.1.1 (A:9-273) D-lactate dehydrogenase {Esche 5e-22
d1uxya1198 d.145.1.2 (A:3-200) Uridine diphospho-N-Acetylenol 2e-10
d1hska1194 d.145.1.2 (A:15-208) Uridine diphospho-N-Acetyleno 1e-08
>d1e8ga1 d.58.32.1 (A:274-560) Vanillyl-alcohol oxidase {Fungus (Penicillium simplicissimum) [TaxId: 69488]} Length = 287 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: FAD-linked oxidases, C-terminal domain
family: Vanillyl-alcohol oxidase-like
domain: Vanillyl-alcohol oxidase
species: Fungus (Penicillium simplicissimum) [TaxId: 69488]

 Score =  208 bits (530), Expect = 1e-63
 Identities = 42/284 (14%), Positives = 80/284 (28%), Gaps = 20/284 (7%)

Query: 297 GYDLTRLIIGSEGTLGIITEVTLRLQKIPQHSVVATCNFPTIKDAADVAIATMLSGIQVS 356
           GY    + +  +G L    ++   L+       V T     +  A      +  S  +  
Sbjct: 2   GYQSYLITLPKDGDLKQAVDIIRPLRLGMALQNVPTIRHILLDAAVLGDKRSYSSRTEPL 61

Query: 357 RVELLDEVQVRAVNIANGKNLPELPTLMFEFIGTQAYSHEQTLIVQKIVSEHNGTDFIFA 416
             E LD++  +                     G +         ++   S   G  F F 
Sbjct: 62  SDEELDKIAKQ--------LNLGRWNFYGALYGPEPIRRVLWETIKDAFSAIPGVKFYFP 113

Query: 417 EDPEAKKELWKMRKEALW--------ACFAMEPSFEAMISDVCVPLS-CLAELISRSKKE 467
           ED      L    K                +        S +            + +KK 
Sbjct: 114 EDTPENSVLRVRDKTMQGIPTYDELKWIDWLPNGAHLFFSPIAKVSGEDAMMQYAVTKKR 173

Query: 468 LDASPLICTVIAHAGDGNFHTVIL--FDPSKEEDRQEAERLNRFMVHTALSMEGTCTGEH 525
              + L        G    H ++   F+      +++ + L R ++    +        H
Sbjct: 174 CQEAGLDFIGTFTVGMREMHHIVCIVFNKKDLIQKRKVQWLMRTLIDDCAANGWGEYRTH 233

Query: 526 GIGTGKMKYLEKELGTGALETMKRIKVALDPNNIMNPGKL-IPP 568
                ++        +  L   + +K A+DPN I+ PGK  + P
Sbjct: 234 LAFMDQIMETYNWNNSSFLRFNEVLKNAVDPNGIIAPGKSGVWP 277
>d1wvfa1 d.58.32.1 (A:243-521) Flavoprotein subunit of p-cresol methylhydroxylase {Pseudomonas putida [TaxId: 303]} Length = 279 Back     information, alignment and structure
>d1f0xa1 d.58.32.2 (A:274-567) D-lactate dehydrogenase {Escherichia coli [TaxId: 562]} Length = 294 Back     information, alignment and structure
>d2i0ka2 d.145.1.1 (A:58-273) Cholesterol oxidase {Brevibacterium sterolicum [TaxId: 1702]} Length = 216 Back     information, alignment and structure
>d1e8ga2 d.145.1.1 (A:6-273) Vanillyl-alcohol oxidase {Fungus (Penicillium simplicissimum) [TaxId: 69488]} Length = 268 Back     information, alignment and structure
>d1w1oa2 d.145.1.1 (A:40-245) Cytokinin dehydrogenase 1 {Maize (Zea mays) [TaxId: 4577]} Length = 206 Back     information, alignment and structure
>d1wvfa2 d.145.1.1 (A:7-242) Flavoprotein subunit of p-cresol methylhydroxylase {Pseudomonas putida [TaxId: 303]} Length = 236 Back     information, alignment and structure
>d1f0xa2 d.145.1.1 (A:9-273) D-lactate dehydrogenase {Escherichia coli [TaxId: 562]} Length = 265 Back     information, alignment and structure
>d1uxya1 d.145.1.2 (A:3-200) Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase (MurB), N-terminal domain {Escherichia coli [TaxId: 562]} Length = 198 Back     information, alignment and structure
>d1hska1 d.145.1.2 (A:15-208) Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase (MurB), N-terminal domain {Staphylococcus aureus [TaxId: 1280]} Length = 194 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query572
d1wvfa2236 Flavoprotein subunit of p-cresol methylhydroxylase 100.0
d1w1oa2206 Cytokinin dehydrogenase 1 {Maize (Zea mays) [TaxId 100.0
d1e8ga2268 Vanillyl-alcohol oxidase {Fungus (Penicillium simp 100.0
d1f0xa1294 D-lactate dehydrogenase {Escherichia coli [TaxId: 99.97
d1e8ga1287 Vanillyl-alcohol oxidase {Fungus (Penicillium simp 99.97
d1wvfa1279 Flavoprotein subunit of p-cresol methylhydroxylase 99.97
d1f0xa2265 D-lactate dehydrogenase {Escherichia coli [TaxId: 99.96
d2i0ka2216 Cholesterol oxidase {Brevibacterium sterolicum [Ta 99.95
d1hska1194 Uridine diphospho-N-Acetylenolpyruvylglucosamine r 99.93
d1uxya1198 Uridine diphospho-N-Acetylenolpyruvylglucosamine r 99.89
d1w1oa1289 Cytokinin dehydrogenase 1 {Maize (Zea mays) [TaxId 98.29
d1ffvc2177 Carbon monoxide (CO) dehydrogenase flavoprotein, N 96.35
d1jroa4167 Xanthine dehydrogenase chain A, domain 3 {Rhodobac 93.9
d1t3qc2176 Quinoline 2-oxidoreductase medium subunit QorM {Ps 93.59
d1v97a6223 Xanthine oxidase, domain 3 (?) {Cow (Bos taurus) [ 93.38
d1rm6b2216 4-hydroxybenzoyl-CoA reductase beta subunit HrcB, 92.86
d1n62c2177 Carbon monoxide (CO) dehydrogenase flavoprotein, N 91.78
>d1wvfa2 d.145.1.1 (A:7-242) Flavoprotein subunit of p-cresol methylhydroxylase {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: FAD-binding/transporter-associated domain-like
superfamily: FAD-binding/transporter-associated domain-like
family: FAD-linked oxidases, N-terminal domain
domain: Flavoprotein subunit of p-cresol methylhydroxylase
species: Pseudomonas putida [TaxId: 303]

Probab=100.00  E-value=1.2e-39  Score=320.81  Aligned_cols=213  Identities=23%  Similarity=0.343  Sum_probs=185.2

Q ss_pred             HHHHHHHHHhcCC-CeeeChhhhhhccCCCCccccCCCCCCEEEEcCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCC
Q 008252          113 QELVDELKAICQD-DMTMDYEERYIHGKPQNSFHKAVNIPDIIVFPRSEDEVSKIVKCCDKHKVPIIPYGGATSIEGHTL  191 (572)
Q Consensus       113 ~~~~~~L~~~lg~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~vv~P~s~eeV~~iv~~a~~~~~~v~~~GgG~s~~g~~~  191 (572)
                      ++++++|++++|+ +|.++.++...|.+++.+..+....|.+||+|+|++||+++|++|+++++|++++|+||++.+++.
T Consensus        13 ~~~v~~l~~ivG~~~V~~~~~~~~~y~~d~~~~~~~~~~P~~Vv~P~s~eeV~~iv~~a~~~~~~i~~~g~G~s~~~g~~   92 (236)
T d1wvfa2          13 NKAVQKFRALLGDDNVLVESDQLVPYNKIMMPVENAAHAPSAAVTATTVEQVQGVVKICNEHKIPIWTISTGRNFGYGSA   92 (236)
T ss_dssp             HHHHHHHHHHHCGGGEECSHHHHHHHHCCCSSSCGGGGCCSEEEECCSHHHHHHHHHHHHHHTCCEEEESSCCCTTTTTT
T ss_pred             HHHHHHHHHHcCCccEEECHHHHHHHhCccccccccCcCCCEEEecCCHHHHHHHHHHHHcCCcceeccccccccccccc
Confidence            4578999999996 677887777777666555555556899999999999999999999999999999999999865443


Q ss_pred             C--CCCcEEEEcCCCCCcEEeccCCCeEEEcCCCCHHHHHHHHccCCCccCCCCCCccccccccc-ccccCCCccccccc
Q 008252          192 S--PNGGVCIDLSLMKSVKALHIEDMDVVVEPGIGWMELNEYLEPYGLFFPLDPGPGATIGGMCA-TRCSGSLAVRYGTM  268 (572)
Q Consensus       192 ~--~~~gvvIdl~~mn~i~~~~~~~~~v~v~aGv~~~~L~~~L~~~Gl~l~~~~~~~~tvGG~v~-~~~~G~~~~~yG~~  268 (572)
                      .  .+++|+|||++||+|+++|+++++++||||++|.||+++|.++|+.++++++..+++||.++ ++++|..+.+||.+
T Consensus        93 ~~~~~~~ividl~~mn~i~~id~~~~~v~v~aG~~~~~l~~~l~~~g~~~~~~~~~~~~~gG~i~~~~~~G~~~~~yG~~  172 (236)
T d1wvfa2          93 APVQRGQVILDLKKMNKIIKIDPEMCYALVEPGVTFGQMYDYIQENNLPVMLSFSAPSAIAGPVGNTMDRGVGYTPYGEH  172 (236)
T ss_dssp             SCSSTTCEEEECTTCCCEEEEETTTTEEEECTTCCHHHHHHHHHHTTCSEECCCCSSCTTCCHHHHHHTTCBCSSTTCBG
T ss_pred             ccccceEEEeecccccchhhhcccccceehhhhhhhhhhHHHHhhhcccccccccccccccccccccccccccccccccc
Confidence            2  36789999999999999999999999999999999999999999999988887777777765 78899989999999


Q ss_pred             cceeeeEEEEeeCCcEEEcccccccCcCCccchhhhhc-------CCCCeEEEEEEEEeeeccc
Q 008252          269 RDNVINLKVVLANGDVVKTASRARKSAAGYDLTRLIIG-------SEGTLGIITEVTLRLQKIP  325 (572)
Q Consensus       269 ~D~v~~~~vV~~dG~i~~~~~~~~~~~~g~dl~~~~~G-------s~G~lGIIt~~tlkl~p~p  325 (572)
                      .|+|+++|+|++||++++++....++..++++++...|       |+|+|||||++|||++|+|
T Consensus       173 ~d~v~~levVl~~G~iv~~~~~~~~~~~~~~~~~~~~G~~~~~l~SeGtlGIIt~~tlkl~P~P  236 (236)
T d1wvfa2         173 FMMQCGMEVVLANGDVYRTGMGGVPGSNTWQIFKWGYGPTLDGMFTQANYGICTKMGFWLMPKP  236 (236)
T ss_dssp             GGGEEEEEEECTTSCEEECGGGGSTTCSCTTTCSCCSSCCCHHHHTTSSSCEEEEEEEECEECC
T ss_pred             ccceeeeEEEcCCCcEEEeCCccCCCccHHHHHhcCcCccccccccccceEEEEEEEEEEEcCC
Confidence            99999999999999999987766666666777766555       8999999999999999987
>d1w1oa2 d.145.1.1 (A:40-245) Cytokinin dehydrogenase 1 {Maize (Zea mays) [TaxId: 4577]} Back     information, alignment and structure
>d1e8ga2 d.145.1.1 (A:6-273) Vanillyl-alcohol oxidase {Fungus (Penicillium simplicissimum) [TaxId: 69488]} Back     information, alignment and structure
>d1f0xa1 d.58.32.2 (A:274-567) D-lactate dehydrogenase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1e8ga1 d.58.32.1 (A:274-560) Vanillyl-alcohol oxidase {Fungus (Penicillium simplicissimum) [TaxId: 69488]} Back     information, alignment and structure
>d1wvfa1 d.58.32.1 (A:243-521) Flavoprotein subunit of p-cresol methylhydroxylase {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d1f0xa2 d.145.1.1 (A:9-273) D-lactate dehydrogenase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2i0ka2 d.145.1.1 (A:58-273) Cholesterol oxidase {Brevibacterium sterolicum [TaxId: 1702]} Back     information, alignment and structure
>d1hska1 d.145.1.2 (A:15-208) Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase (MurB), N-terminal domain {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1uxya1 d.145.1.2 (A:3-200) Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase (MurB), N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1w1oa1 d.58.32.4 (A:246-534) Cytokinin dehydrogenase 1 {Maize (Zea mays) [TaxId: 4577]} Back     information, alignment and structure
>d1ffvc2 d.145.1.3 (C:1-177) Carbon monoxide (CO) dehydrogenase flavoprotein, N-terminal domain {Hydrogenophaga pseudoflava [TaxId: 47421]} Back     information, alignment and structure
>d1jroa4 d.145.1.3 (A:179-345) Xanthine dehydrogenase chain A, domain 3 {Rhodobacter capsulatus [TaxId: 1061]} Back     information, alignment and structure
>d1t3qc2 d.145.1.3 (C:1-176) Quinoline 2-oxidoreductase medium subunit QorM {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d1v97a6 d.145.1.3 (A:192-414) Xanthine oxidase, domain 3 (?) {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1rm6b2 d.145.1.3 (B:1-216) 4-hydroxybenzoyl-CoA reductase beta subunit HrcB, N-terminal domain {Thauera aromatica [TaxId: 59405]} Back     information, alignment and structure
>d1n62c2 d.145.1.3 (C:1-177) Carbon monoxide (CO) dehydrogenase flavoprotein, N-terminal domain {Oligotropha carboxidovorans, formerly Pseudomonas carboxydovorans [TaxId: 40137]} Back     information, alignment and structure