Citrus Sinensis ID: 008304

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570
Protein Sequence
MASAQVLPTSRKQEHLEAGKRKLEEFRKKKAAERAKKASSVSQPQASDFSLHDQHHLEADRVRVTDLDGAGTSDGPDKAVVSLPLVMHNDDNKALKLAQQSQQVSLSDKRINSNCFENDLNSSSAYLAQTYSNNQETSGSAGPVNVSNSQETKDVNNDFVIYSSGQGRLRDGIMSNQFLSLLPEASQDYDSSNSSKSGFQGIEESQSKGNDSFPKVPTLVNSGPSHDFVTKISPQNSVSTLFQSKPSNAIALGNGHSFHSSSEGTAHLTTSTGGSASEVGLNTPSTTNFSDPVSFNTGEGKPSNSASGLASLQSTPFKRSEYSGYNFDAGNSFNHVPVSSATNKFTLGKSRASFLDSLNVPRASSGTLFEQTEPERDSFMSSSSLNSMDVLGSSPAQNPSMEKETTGAFSKTTTSNIPSAFDYLGNPTVSTSDRGDIRRLGSNESSIENQHGFYSTKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKVRSL
Secondary Structure (PSIPRED)
cccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccccEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccEEEEcccccccccccccccEccccccEccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEccccccccccccccccccccccccccccccccEccccccccccccccccccccccccccHHHccccccccccccccccccccccccccccccccccccccccccccccccccccHHHcccccccccccccccccccccccccHHHcccccccHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
masaqvlptsrkqEHLEAGKRKLEEFRKKKAAERAkkassvsqpqasdfslhdqhhleadrvrvtdldgagtsdgpdkavvslplvmhnddnKALKLAQQSQqvslsdkrinsncfendlnssSAYLAQTYsnnqetsgsagpvnvsnsqetkdvnndFVIYssgqgrlrdgimsnqflsllpeasqdydssnssksgfqgieesqskgndsfpkvptlvnsgpshdfvtkispqnsvstlfqskpsnaialgnghsfhsssegtahlttstggsasevglntpsttnfsdpvsfntgegkpsnsasglaslqstpfkrseysgynfdagnsfnhvpvssatnkftlgkSRASfldslnvprassgtlfeqteperdsfmsssslnsmdvlgsspaqnpsmekettgafsktttsnipsafdylgnptvstsdrgdirrlgsnessienqhgfystkhnEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAenssltdsynQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKVRSL
Flexible Loop (DISEMBL)
masaqvlptsrkqehleagkrKLEEFRKKKAAerakkassvsqpqasdfslHDQHHLEADRVRVTDLDGAGTSDGPDKAVVSLPLVMHNDDNKALKLAQQSQQVSLSDKRINSNCFENDLNSSSAYLAQTYSNNQETSGSAGPVNVSnsqetkdvnnDFVIYSSGQGRLRDGIMSNQFLSLLPEASQDYDSSNSSKSGFQGIEESqskgndsfpkVPTLVNSGPSHDFVTKISPQNSVSTLFQSKPSNAIALGNGHSFHSSSEGTAHLTTSTGGSASEVGLNTPSTTNFSDPVSFNTGEGKPSNSASGLASLQSTPFKRSEYSGYNFDAGNSFNHVPVSSATNKFTLGKSRASFldslnvprassgtlfeqteperDSFMSSSSLNSMDVLGSSPAQNPSMEKETTGAFSKTTTSNIPSAFDYLGNPTVSTSDRGDIRRLGSNESSIENQHGFYSTKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAaenssltdsynqQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILasevigleekvrsl
Low Complexity Region (SEG)
MASAQVLPTSRKQEHLEAGkrkleefrkkkaaerakkaSSVSQPQASDFSLHDQHHLEADRVRVTDLDGAGTSDGPDKAVVSLPLVMHNDDNKALKLAQQSQQVSLSDKRINSNCFENDLNSSSAYLAQTYSNNQETSGSAGPVNVSNSQETKDVNNDFVIYSSGQGRLRDGIMSNQFLSLLPEAsqdydssnssksGFQGIEESQSKGNDSFPKVPTLVNSGPSHDFVTKISPQNSVSTLFQSKPSNAIALGNGHSFHSSSEGTAHLTTSTGGSASEVGLNTPSTTNFSDPVSFNTGEGKPSNSASGLASLQSTPFKRSEYSGYNFDAGNSFNHVPVSSATNKFTLGKSRASFLDSLNVPRASSGTLFEQTEPERdsfmsssslnsmdvlgssPAQNPSMEKETTGAFSKTTTSNIPSAFDYLGNPTVSTSDRGDIRRLGSNESSIENQHGFYSTKHNEDFAALEQHIEDLTQEKFALQrsleasralseslaaensslTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKVRSL
Disordered region (IsUnstruct)
*************************************************************************************************************************************************************DFVIYSS************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************IKVQLVELESFRNEYANVRLECNAADERAKILASEVIG********
Disordered Region (DISOPRED)
******************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************AALEQHIEDLTQEKF***********************T*************************************************************LEEKVR**
Disordered Region (DISEMBL)
******************GKRKLEEF*************************HDQHHLEADRVRVTDLDGAGTSDGPDKAVVSLPLVMHNDDNKALKL***********KRINSNCFENDLNSSSAYLAQTYS**************SNSQETKDVNNDFVIYSSGQGRLRDGIMSNQFLSLLPEA**************************SFPKVPTLVNSGPSHDFVTKISPQNSVSTLFQSKPSNAIALGNGHSFHSSSEGTAHLTTSTGGSASEVGLNTPSTTNFSDPVSFN*****************STPFKRSEYSGYNFDAGNSFNHVPVSSATNKFTLGKSRASFLDSLNVPRASSGTLFE**************LNSM**********************KTTTSNIPSAFDYLGNPTVSTSDRGDIRRLGSNESSIENQHGFYSTKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKVRSL
Disordered Region (DISPRO)
*************EHLEAGKRKLEEFRKKKAAER**********************************GAGTSDGPDKAVVSLPLVMHNDDNKALKLAQQSQQVSLSDKRINSNCFEN*LNSS*******************************VNNDFVIYSSGQGRLRDGIMSNQFLSLLP*************************************NSGPSHDFVTKIS**NSV******KPSNAIALGNG*SF*********L***T***ASEVGLNTPSTTNFSDPVSFNTGEGKPS*************************************************SFLD*LN*P*******************************************************************************************FYSTKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKVRSL
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MASAQVLPTSRKQEHxxxxxxxxxxxxxxxxxxxxxKASSVSQPQASDFSLHDQHHLEADRVRVTDLDGAGTSDGPDKAVVSLPLVMHNDDNKALKLAQQSQQVSLSDKRINSNCFENDLNSSSAYLAQTYSNNQETSGSAGPVNVSNSQETKDVNNDFVIYSSGQGRLRDGIMSNQFLSLLPEASQDYDSSNSSKSGFQGIEESQSKGNDSFPKVPTLVNSGPSHDFVTKISPQNSVSTLFQSKPSNAIALGNGHSFHSSSEGTAHLTTSTGGSASEVGLNTPSTTNFSDPVSFNTGEGKPSNSASGLASLQSTPFKRSEYSGYNFDAGNSFNHVPVSSATNKFTLGKSRASFLDSLNVPRASSGTLFEQTEPERDSFMSSSSLNSMDVLGSSPAQNPSMEKETTGAFSKTTTSNIPSAFDYLGNPTVSTSDRGDIRRLGSNESSIENQHGFYxxxxxxxxxxxxxxxxxxxxxxxxxxxxLEASRALSESLAAENSSLTDSxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxAKILASEVIGLEEKVRSL
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	570
225433351	804	PREDICTED: uncharacterized protein LOC10	0.956	0.677	0.489	1e-107
356533381	784	PREDICTED: uncharacterized protein LOC10	0.933	0.678	0.437	1e-97
356577582	684	PREDICTED: uncharacterized protein LOC10	0.933	0.777	0.401	4e-92
449458920	607	PREDICTED: uncharacterized protein LOC10	0.961	0.902	0.408	1e-90
255554298	713	conserved hypothetical protein [Ricinus	0.854	0.683	0.447	2e-88
147856404	620	hypothetical protein VITISV_020999 [Viti	0.826	0.759	0.444	4e-69
449523740	507	PREDICTED: uncharacterized LOC101216257,	0.835	0.938	0.353	1e-54
224110692	422	predicted protein [Populus trichocarpa]	0.628	0.848	0.418	1e-48
145338880	714	protein BLISTER [Arabidopsis thaliana] g	0.812	0.648	0.346	9e-48
297831252	728	hypothetical protein ARALYDRAFT_898989 [	0.442	0.346	0.453	2e-45

>gi|225433351|ref|XP_002282738.1| PREDICTED: uncharacterized protein LOC100251145 [Vitis vinifera] gi|297741880|emb|CBI33315.3| unnamed protein product [Vitis vinifera]

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 284/580 (48%), Positives = 366/580 (63%), Gaps = 35/580 (6%)

Query: 1   MASAQVLPTSRKQEHLEAGKRKLEEFRKKKAAERAKKASSVSQPQASDFSLHDQHHLEAD 60
           MASAQVL   RKQEHLEAGKR+LEEFRKKKAA+RAKK +S+SQ Q++D SL  Q  LE +
Sbjct: 1   MASAQVL---RKQEHLEAGKRRLEEFRKKKAADRAKKVASISQLQSADVSLCVQP-LENE 56

Query: 61  RVRVTDLDGAGTSDGPDKAVVSLPLVMHNDDNKALKLAQQSQQVSLSDKRINSNCFENDL 120
           +VRV D DGAG SDG  +AV  +     N+DNK +++ Q S+  S SD          D 
Sbjct: 57  QVRVMDSDGAGISDGVGEAVTKVI----NNDNKKIEIFQNSEPCS-SDIYAKPPFSTKDY 111

Query: 121 NSSSAYLAQTYSNNQ-----ETSGSAGPVNVSNSQETKDVNNDFVIYSSGQGRLRDGIMS 175
            + SA   QT  N+Q     + SG  G V     Q  K+ N+D  I++  +G   + I+S
Sbjct: 112 KAFSADSVQTQVNDQGFNRYDASGFLGLVG----QLAKEKNDDGGIHAGAEGSAYE-IVS 166

Query: 176 NQFLSLLPEASQDYDSSNSSKSGFQGIEESQSKGNDSFPKVPTLVNSGPSHDFVTKISPQ 235
           +Q ++  P+A +D DSS SS+S F  +EE+Q K + S  K  T+++ G S   +   S +
Sbjct: 167 DQSIAF-PQAIRDTDSS-SSQSNFHRMEETQQKDHKSSLKSFTVIDPGISQVPLANASSE 224

Query: 236 NSVSTLFQSKPSNAIALGN-GHSFHSSSEGTAHLTTSTGGSASEVGLNTPSTTNFSDPVS 294
           NS          NAI   N G++   SS  + H  T+   SA  VG + P + +F+  + 
Sbjct: 225 NS---------GNAILPNNYGYANMKSSADSVHPITTAKQSAFGVGQDVPGSVDFNVHML 275

Query: 295 FNTGEGKPSNSASGLASLQ-STPFK-RSEYSGYNFDAGNSFNHVPVSSATNKFTLGKSRA 352
            N  + K S+S   L S   ++P    S  + + FD   S NH+P+ S T +    +SR 
Sbjct: 276 SNKEDKKLSSSFGYLPSTHGASPLASESSSTSFAFDVRGSSNHLPLYSVTPETNARRSRP 335

Query: 353 SFLDSLNVPRASSGTLFEQTEPERDS--FMSSSSLNSMDVLGSSPAQNPSMEKETTGAFS 410
           SFLDS+NVPR  S +    TEP +    F SSS +NSMDVLGSS +     E E    FS
Sbjct: 336 SFLDSINVPRVPSASHLPLTEPGKAEPFFSSSSKVNSMDVLGSSASTKSLAESENFEPFS 395

Query: 411 KTTTSNIPSAFDYLGNPTVSTSDRGDIRRLGSNESSIENQHGFYSTKHNEDFAALEQHIE 470
           K   SN PS FD+  N +VS  +R ++ R G +++S+E +  F+S K NEDFAALEQHIE
Sbjct: 396 KAGNSNGPSLFDHSINSSVSVGNRVEMLRHGLDQNSLERKFEFHSQKQNEDFAALEQHIE 455

Query: 471 DLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLV 530
           DLTQEKF+LQR+LEASRAL+ESLAAENSSLTDSYNQQ SVVNQLKS+MEKLQEEIK QLV
Sbjct: 456 DLTQEKFSLQRALEASRALAESLAAENSSLTDSYNQQGSVVNQLKSDMEKLQEEIKAQLV 515

Query: 531 ELESFRNEYANVRLECNAADERAKILASEVIGLEEKVRSL 570
           +LESF+ EYAN +LECNAADERAK+LASEVIGLEEK   L
Sbjct: 516 DLESFKIEYANAQLECNAADERAKLLASEVIGLEEKALRL 555

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356533381|ref|XP_003535243.1| PREDICTED: uncharacterized protein LOC100817279 [Glycine max]

 Score =  363 bits (933), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 255/583 (43%), Positives = 343/583 (58%), Gaps = 51/583 (8%)

Query: 1   MASAQVLP----TSRKQEHLEAGKRKLEEFRKKKAAERAKKASSVSQPQASDFSLHDQHH 56
           MASAQVLP    +SRKQEHLEAGKR+LEEFRKKKAAER KKA+S  Q   SD SL+ +  
Sbjct: 1   MASAQVLPNSTASSRKQEHLEAGKRRLEEFRKKKAAERTKKAASSGQVHNSDDSLNKKQS 60

Query: 57  LEADRVRVTDLDGAGTSDGPDKAVVSL-PLVMHNDDNKALKLAQQSQQVSLSDKRINSNC 115
            E + VRV + DG  TSD    +V     L M ND N  L  +Q S Q SL+        
Sbjct: 61  SEVENVRVNESDGVTTSDAVGGSVTDTSTLGMRNDKNLNL-FSQSSNQGSLAGSTF---L 116

Query: 116 FENDLNSSSAYLAQTYSNNQE-----TSGSAGPVNVSNSQETKDVNNDFVIYSSGQGRLR 170
             NDLN SS  L + +SN  E      S      + S + E   VN+ + I++ G   + 
Sbjct: 117 TRNDLNMSSTSLGEAHSNIDEGKRYNASSVTASADFSQNNERNKVNDIYGIHAVGVDGIP 176

Query: 171 DGIMSNQFLSLLPEASQDYDSSNSSKSGFQGIEESQSKGNDSFPKVPTLVNSGPSHDFVT 230
               ++Q + L  + SQ++D  N + S   G+ ++QS  ++S  K   + ++  S+ F +
Sbjct: 177 YVTTNHQSVPLCSQESQEFD--NHATSSLHGVNDNQSNKSNSSLKDYAVTDNFSSY-FPS 233

Query: 231 KISPQNSVSTLFQSKPSNAIALGNGHSFHSSSEGTAHLTTSTGGSASEVGLNTPSTTNFS 290
           KI+PQNSV T  Q KP+N+    +G+S                 S    G +   ++ F 
Sbjct: 234 KITPQNSVDTPLQIKPTNSSTFDSGYSH----------------SLLSGGFSDSFSSKFR 277

Query: 291 DPVSFNTGEGKPSNSASGLASLQSTPFKRSEYSGYNFDAGNSFNHVPVSSATNKFTLGKS 350
           + V+         +S + L SL      + + +GY  +A NS NH P+ S   + +  +S
Sbjct: 278 ETVT---------SSDNNLPSLHGATMPKYDSTGY--EARNSSNHTPIHSLPTESSSRRS 326

Query: 351 RASFLDSLNVPRASSGTLFEQTEPERDSFMSS---SSLNSMDVLGSSPAQNPSMEKETTG 407
           R SFLDSLNV R S G+ F Q+E  +DS MS+   SS N  D+ GS+    PS E +   
Sbjct: 327 RPSFLDSLNVTRPSLGSPFHQSE--QDSLMSNYLESSSN--DISGSAYFHKPSEETKIMP 382

Query: 408 AFSKTTTSNIPSAFDYLGNPTVSTSDRGDIRRLGSNESSIENQHGFYSTKHNEDFAALEQ 467
            FS  TT+N+ S+ + L  P+V  +D        + ES +E +H +YS+  NEDF ALEQ
Sbjct: 383 LFSNFTTANVHSSLEPLTTPSVVDNDNQGALITSTRESGMEKKHDYYSSSQNEDFTALEQ 442

Query: 468 HIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKV 527
           HIEDLT+EKF+LQR+LEASR L+ESLA ENS+LTD+YNQQRSVVNQLKS+ME L E+IK 
Sbjct: 443 HIEDLTKEKFSLQRALEASRTLAESLATENSTLTDNYNQQRSVVNQLKSDMENLHEDIKA 502

Query: 528 QLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKVRSL 570
           +LVELE+ ++EY N +LECNAADERAK+LASEVIGLEEK   L
Sbjct: 503 RLVELEAIKSEYTNAQLECNAADERAKLLASEVIGLEEKALRL 545

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356577582|ref|XP_003556903.1| PREDICTED: uncharacterized protein LOC100811137 [Glycine max]

 Score =  345 bits (885), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 251/625 (40%), Positives = 346/625 (55%), Gaps = 93/625 (14%)

Query: 1   MASAQVLP----TSRKQEHLEAGKRK---------------------------------- 22
           MASAQVLP    +SRKQEHLEAGKR+                                  
Sbjct: 1   MASAQVLPNTAASSRKQEHLEAGKRRGGKWKEIVKMIGGELKGRGLCNLQLRIACQSVVT 60

Query: 23  -------------LEEFRKKKAAERAKKASSVSQPQASDFSLHDQHHLEADRVRVTDLDG 69
                        LEEFRKKKAAER KKA+S  Q   SD SL+ +   E + VRV + DG
Sbjct: 61  VEGLGLIGGSCSQLEEFRKKKAAERTKKAASSGQVHNSDASLNKKQSSEVENVRVNESDG 120

Query: 70  AGTSDGPDKAVVSL-PLVMHNDDNKALKLAQQSQQVSLSDKRINSNCFENDLNSSSAYLA 128
             TSDG   +V     L M ND N  L ++Q S Q SL+          NDLN  S  L 
Sbjct: 121 VSTSDGVGGSVTGTSTLGMRNDKNLNL-ISQSSNQGSLAGSTF---LARNDLNMLSTSLG 176

Query: 129 QTYSNNQET-----SGSAGPVNVSNSQETKDVNNDFVIYSSGQGRLRDGIMSNQFLSLLP 183
           + +SN  E      S      + S + ET  VN+   I++ G   +     ++Q + L  
Sbjct: 177 EAHSNIDECKRYNASSVTTSADFSQNNETNKVNDIHGIHAVGVDGIPYATTNHQSVPLRS 236

Query: 184 EASQDYDSSNSSKSGFQGIEESQSKGNDSFPKVPTLVNSGPSHDFVTKISPQNSVSTLFQ 243
           + SQ++DS N S+S   G+ ++QS  ++S  K   + ++  S+ F +KI+PQNSV T  Q
Sbjct: 237 QESQEFDS-NPSQSSLHGVNDNQSNKSNSSLKDYAVTDNFSSY-FPSKITPQNSVDTPLQ 294

Query: 244 SKPSNAIALGNGHSFHSSSEGTAHLTTSTGGSASEVGLNTPSTTNFSDPVSFNTGEGKPS 303
            KP N+    +G+S                 S    G +   ++ F + ++         
Sbjct: 295 IKPMNSSTFDSGYSH----------------SLLSGGFSDSFSSKFRETIT--------- 329

Query: 304 NSASGLASLQSTPFKRSEYSGYNFDAGNSFNHVPVSSATNKFTLGKSRASFLDSLNVPRA 363
           +S + L SL      + + +GY  +A NS NH P+ S   + +  +SR SFLDSLNV R 
Sbjct: 330 SSDNNLPSLHGATMLKYDSTGY--EARNSSNHTPIHSLPTESSSQRSRPSFLDSLNVTRP 387

Query: 364 SSGTLFEQTEPERDSFMSSSSLNSMD-VLGSSPAQNPSMEKETTGAFSKTTTSNIPSAFD 422
           S G+ F Q+E  +DS MS+   +S + + GS+    PS E ++   FS  TT+N+ S+ +
Sbjct: 388 SLGSPFHQSE--QDSSMSNHLESSSNGISGSTYFHKPSEETKSMPLFSNFTTANVHSSLE 445

Query: 423 YLGNPTVSTSDRGDIRRLGSNESSIENQHGFYSTKHNEDFAALEQHIEDLTQEKFALQRS 482
            L  P+V  +D        + E+ +E QH +YS+  NEDF+ALEQHIEDLT+EKF+L+R+
Sbjct: 446 QLTTPSVVDNDNQGALMTSTRENGMEKQHDYYSSSQNEDFSALEQHIEDLTKEKFSLRRA 505

Query: 483 LEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANV 542
           LEASR L+ESLA ENS+LTD+YNQQRSVV+QLKS+ME LQE+IK +LVE E+ ++EY N 
Sbjct: 506 LEASRTLAESLATENSTLTDNYNQQRSVVDQLKSDMENLQEDIKARLVEFEAIKSEYTNA 565

Query: 543 RLECNAADERAKILASEVIGLEEKV 567
           +LECNAADERAK+LASEVIGLEEK+
Sbjct: 566 QLECNAADERAKLLASEVIGLEEKL 590

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449458920|ref|XP_004147194.1| PREDICTED: uncharacterized protein LOC101216257 [Cucumis sativus]

 Score =  340 bits (872), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 247/604 (40%), Positives = 343/604 (56%), Gaps = 56/604 (9%)

Query: 1   MASAQVLPTS----RKQEHLEAGKRKLEEFRKKKAAERAKKASSVSQPQASDFSLHDQHH 56
           MASAQVLP S    RK EHLEAGKR+LEEFRKKKAAER KKA+  SQ   SD    ++  
Sbjct: 1   MASAQVLPNSMASTRKLEHLEAGKRRLEEFRKKKAAERVKKAAPPSQNHVSDAGSEEKKP 60

Query: 57  LEADRV-RVTDLDGAGTSDGPDKAVVSLPLVMHNDDNKALKLAQQSQQVSLSDKRINSNC 115
           LE++   R+TD DGA T++G  ++ +     +  DD  A   +Q   Q +L++K  +   
Sbjct: 61  LESEHAQRITDSDGATTTNGAGRSAIESSSALVKDDRHADDFSQNINQNALNEKHASYPF 120

Query: 116 FENDLNSSSAYLAQTYSNNQETS---GSA--GPVNVSNSQETKDVNNDFVIYSSGQGRLR 170
             N     S    +  SN QE +   GS   GP +V++  E  ++N D  + +  Q R  
Sbjct: 121 SRNTDGVFSTDPVKQPSNGQEINTFNGSRLFGPTDVNSRNEILEINKDSELINGPQAR-- 178

Query: 171 DGIMSNQFLSLLPEASQDYDS--SNSSKSGFQGIEESQSKGNDSFPKVPTLVNSGPSHDF 228
             I       + P+AS+  DS  S S+  G  G+   +    +S      L +SG  H F
Sbjct: 179 --ISFQSAFGINPQASEGTDSIISQSAHHGVDGLLFRRDSQENSM-----LKSSGSLHKF 231

Query: 229 VTKISPQNSVSTLFQSKPSNAIALGNGHSFHSSSEGTAHLTTSTGGSASEVGLNTPSTTN 288
              IS QN+V+ L  +  S+   L +G+SF SS +G  + +T  G ++ EVG        
Sbjct: 232 SANISLQNTVANLQDTDSSSNNNLASGNSFQSSYDGLFNNSTRKGYNSHEVG-------- 283

Query: 289 FSDPVSFNTGEGKPSNSASGLASLQSTPFKRSEYSGYNFDAGNSFNHVPVSSATNKFTLG 348
             + +  N  +GKP +  +    ++    + SE +G + D     N+ P  +A+++ +  
Sbjct: 284 --ESMHRNFEQGKPID-VTDFTRIKPESVQSSEPTGLDADIRLPSNYEPPYTASSENSFR 340

Query: 349 KSRASFLDSLNVPRASSGTLFEQTEPERD---------------SFMSSSSLNS------ 387
           +SR SFLDSL+VP+ASSG+     E +++               SF   +S+ S      
Sbjct: 341 RSRPSFLDSLSVPKASSGSFLGHGERDKEPGLSDGFKFNKDGPASFSFQNSIKSDGFRTD 400

Query: 388 -MDVLGSSPAQNPSMEKETTGAFSKTTTSNIPSAFDYLGNPTVSTSDRGDIRRLGSNESS 446
             D   S   Q P M+ +T G  S  T+ N P ++     P+V       I  +G  +++
Sbjct: 401 ERDGSESLTLQKPLMDVKTLGTPSHFTSQNTPVSYSNSFPPSVFPVKDQPI--IGIEDNT 458

Query: 447 IENQHGFYSTKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQ 506
           +E +H  YS+K NEDFAALEQHIEDLTQEKF+LQR+L+ASR L+ESLAAENSSLTDSYN+
Sbjct: 459 MERKHELYSSKQNEDFAALEQHIEDLTQEKFSLQRALDASRTLAESLAAENSSLTDSYNK 518

Query: 507 QRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEK 566
           QRSVVNQLKS+ME LQEE+K Q+VELES + EYAN +LECNAADERAK++ASEVIGLEEK
Sbjct: 519 QRSVVNQLKSDMEMLQEEMKTQMVELESIKLEYANAQLECNAADERAKLIASEVIGLEEK 578

Query: 567 VRSL 570
              L
Sbjct: 579 ALRL 582

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255554298|ref|XP_002518189.1| conserved hypothetical protein [Ricinus communis] gi|223542785|gb|EEF44322.1| conserved hypothetical protein [Ricinus communis]

 Score =  333 bits (853), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 256/572 (44%), Positives = 326/572 (56%), Gaps = 85/572 (14%)

Query: 1   MASAQVLPTSRKQEHLEAGKRKLEEFRKKKAAERAKKASSVSQPQASDF-SLHDQHHLEA 59
           MASAQVLP+SRKQEHLEAGKR+LEEFRKKKAA+RA+KA++ SQP AS   S++++  LE+
Sbjct: 1   MASAQVLPSSRKQEHLEAGKRRLEEFRKKKAADRARKAAATSQPLASSVVSVNEKQALES 60

Query: 60  DRVRVTDLDGAGTSDGPDKAVVSLPLVMHNDDNKALKLAQQSQQVSLSDKRINSNCFEND 119
           + VR+TD DGAGTSDGP +  VS   +    D  A+  +    +  L+D  +NS+ F   
Sbjct: 61  EIVRLTDSDGAGTSDGPIEVTVSGTTL---KDADAIPPSMSHYKAPLADIHVNSHDFTRP 117

Query: 120 LNSSSAYLAQTYSNNQETSGSAGPVNVSNSQETKDVNNDFVIYSSGQGRLRDGIMSNQFL 179
            N+S A                   +     ET  +NND   YS  Q    DG++    L
Sbjct: 118 -NASVA------------------ADAKYDIETDQMNNDTDTYSGSQ----DGVVPYVIL 154

Query: 180 SL----LPEASQDYDSSNSSKSGFQGIEESQSKGNDSFPKVPTLVNSGPSHDFVTKISPQ 235
           S     +P  SQ+   S S    FQ +E + S  + +F        + PS    TKIS  
Sbjct: 155 SSRHSSIPPPSQE---SFSQSIPFQSMEYNTSLKDYAF--------TAPS-PLQTKIS-- 200

Query: 236 NSVSTLFQSKPSNAIALGNGHSFHSSSEGTAHLTTSTGGSASEVGLNTPSTTNFSDPVSF 295
                      SNA  L     F        H     G S     L      +F+  +  
Sbjct: 201 -----------SNASTLVTDVDF------IQHNNNLRGSS-----LEVEQDKHFNGSLRN 238

Query: 296 NTGEGKPSNSASGLASLQSTPFKRSEYSGYNFDAGNSFNHVPVSSATNKFTLGKSRASFL 355
           + GE   S S  G  S      + S+  GY+ D+ +S NH  + S T++    +SR SFL
Sbjct: 239 DFGEANFSISLGGFPSAYGKSMQTSDTIGYDSDSKSSSNHTQLLSGTSEPNSRRSRPSFL 298

Query: 356 DSLNVPRASSGTLFEQTEPERDSFMSSSSLNSMDVLGSSPAQNPSMEKETTGAFSKTTTS 415
           DSLNV RASSGT F+ TE +++SFM   S N M  L SS  QN S+E +T G        
Sbjct: 299 DSLNVTRASSGTSFQPTELQKESFMPGKS-NGMGALDSSTFQNLSVEAQTLG-------- 349

Query: 416 NIPSAFDYLGNPTVSTSDRGDIRRLGSNESSIENQHGFYSTKHNEDFAALEQHIEDLTQE 475
                     +P   ++    +     +E+S   +H FYS+KHNEDFAALEQHIEDLTQE
Sbjct: 350 ---------HHPMTFSASSNSVEMSNIDENSWGRKHEFYSSKHNEDFAALEQHIEDLTQE 400

Query: 476 KFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESF 535
           KF+LQR+LE+SRAL+ESLAAENSSLTD+YNQQRS VNQLKS+MEKLQEEIKV LVELES 
Sbjct: 401 KFSLQRALESSRALAESLAAENSSLTDNYNQQRSAVNQLKSDMEKLQEEIKVHLVELESV 460

Query: 536 RNEYANVRLECNAADERAKILASEVIGLEEKV 567
           + EY N +LEC+A+DERAKILASEVIGLEEKV
Sbjct: 461 KMEYGNAKLECDASDERAKILASEVIGLEEKV 492

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147856404|emb|CAN80321.1| hypothetical protein VITISV_020999 [Vitis vinifera]

 Score =  269 bits (687), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 230/517 (44%), Positives = 303/517 (58%), Gaps = 46/517 (8%)

Query: 23  LEEFRKKKAAERAKKASSVSQPQASDFSLHDQHHLEADRVRVTDLDGAGTSDGPDKAVVS 82
           LEEFRKKKAA+RAKK +S+SQ Q++D SL+ Q  LE ++VRV D DGAG SDG  +AV  
Sbjct: 103 LEEFRKKKAADRAKKVASISQLQSADVSLYVQP-LENEQVRVMDSDGAGISDGVGEAVTK 161

Query: 83  LPLVMHNDDNKALKLAQQSQQVSLSDKRINSNCFENDLNSSSAYLAQTYSNNQ-----ET 137
           +     N+DNK +++ Q S+  S SD          D  + SA   QT  N+Q     + 
Sbjct: 162 V----INNDNKKIEIFQNSEPCS-SDIYAKPPFSTKDYKAFSADSVQTRVNDQGFNRYDA 216

Query: 138 SGSAGPVNVSNSQETKDVNNDFVIYSSGQGRLRDGIMSNQFLSLLPEASQDYDSSNSSKS 197
           SG  G V     Q  K+ N+D  I++  +G   + I+S+Q ++  P+A +D DSS SS+S
Sbjct: 217 SGFLGLVG----QLAKEKNDDGGIHAGAEGSAYE-IVSDQSIAF-PQAIRDTDSS-SSQS 269

Query: 198 GFQGIEESQSKGNDSFPKVPTLVNSGPSHDFVTKISPQNSVSTLFQSKPSNAIALGN-GH 256
            F  +EE+Q K + S  K  T+++ G S   +   S +NS          NAI   N G+
Sbjct: 270 NFHRMEETQQKDHKSSLKSFTVIDPGISQVPLANASSENS---------GNAILPNNYGY 320

Query: 257 SFHSSSEGTAHLTTSTGGSASEVGLNTPSTTNFSDPVSFNTGEGKPSNSASGLASLQ-ST 315
           +   SS  + H  T+   SA  VG + P + +F+  +  N  + K S+S   L S   ++
Sbjct: 321 ANMRSSADSVHPITTAKQSAFGVGQDVPGSVDFNVHMLSNKEDKKLSSSFGYLPSTHGAS 380

Query: 316 PFK-RSEYSGYNFDAGNSFNHVPVSSATNKFTLGKSRASFLDSLNVPRASSGTLFEQTEP 374
           P    S  + + FD   S NH+P+ S T +    +SR SFLDS+NVPR  S +    TEP
Sbjct: 381 PLASESSSTSFAFDVRGSSNHLPLYSVTPETNTRRSRPSFLDSINVPRVPSASHLPLTEP 440

Query: 375 ER-DSFMSSSS-LNSMDVLGSSPAQNPSMEKETTGAFSKTTTSNIPSAFDYLGNPTVSTS 432
            + + F SSSS +NSMDVLGSS +     E E    FSK   SN PS FD+  N      
Sbjct: 441 GKAEPFSSSSSKVNSMDVLGSSASTKSLAESENFEPFSKAGNSNGPSPFDHSIN------ 494

Query: 433 DRGDIRRLGSNESSIENQHGFYSTKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSES 492
                    S+   +E +  F+S K NEDFAALEQHIEDLTQEKF+LQR+LEASRAL+ES
Sbjct: 495 --------SSSFCRLERKXEFHSXKQNEDFAALEQHIEDLTQEKFSLQRALEASRALAES 546

Query: 493 LAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQL 529
           LAAENSSLTDSYNQQ SVVNQLKS+MEKLQEEIK QL
Sbjct: 547 LAAENSSLTDSYNQQGSVVNQLKSDMEKLQEEIKAQL 583

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449523740|ref|XP_004168881.1| PREDICTED: uncharacterized LOC101216257, partial [Cucumis sativus]

 Score =  221 bits (562), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 190/538 (35%), Positives = 280/538 (52%), Gaps = 62/538 (11%)

Query: 1   MASAQVLPTS----RKQEHLEAGKRKLEEFRKKKAAERAKKASSVSQPQASDFSLHDQHH 56
           MASAQVLP S    RK EHLEAGKR+LEEFRKKKAAER KKA+  SQ   SD    ++  
Sbjct: 1   MASAQVLPNSMASTRKLEHLEAGKRRLEEFRKKKAAERVKKAAPPSQNHVSDAGSEEKKP 60

Query: 57  LEADRV-RVTDLDGAGTSDGPDKAVVSLPLVMHNDDNKALKLAQQSQQVSLSDKRINSNC 115
           LE++   R+TD DGA T++G  ++ +     +  DD  A   +Q   Q +L++K  +   
Sbjct: 61  LESEHAQRITDSDGATTTNGAGRSAIESSSALVKDDRHADDFSQNINQNALNEKHASYPF 120

Query: 116 FENDLNSSSAYLAQTYSNNQETS---GSA--GPVNVSNSQETKDVNNDFVIYSSGQGRLR 170
             N     S    +  SN QE +   GS   GP +V++  E  ++N D  + +  Q R  
Sbjct: 121 SRNTDGVFSTDPVKQPSNGQEINTFNGSRLFGPTDVNSRNEILEINKDSELINGPQAR-- 178

Query: 171 DGIMSNQFLSLLPEASQDYDS--SNSSKSGFQGIEESQSKGNDSFPKVPTLVNSGPSHDF 228
             I       + P+AS+  DS  S S+  G  G+   +    +S      L +SG  H F
Sbjct: 179 --ISFQSAFGINPQASEGTDSIISQSAHHGVDGLLFRRDSQENSM-----LKSSGSLHKF 231

Query: 229 VTKISPQNSVSTLFQSKPSNAIALGNGHSFHSSSEGTAHL-------------------T 269
              IS QN+V+ L  +  S+   L +G+SF SS +G                       +
Sbjct: 232 SANISLQNTVANLQDTDSSSNNNLASGNSFQSSYDGNIIWILVSIYLVMYDYFSSLFNNS 291

Query: 270 TSTGGSASEVGLNTPSTTNFSDPVSFNTGEGKPSNSASGLASLQSTPFKRSEYSGYNFDA 329
           T  G ++ EVG          + +  N  +GKP +  +    ++    + SE +G + D 
Sbjct: 292 TRKGYNSHEVG----------ESMHRNFEQGKPID-VTDFTRIKPESVQSSEPTGLDADI 340

Query: 330 GNSFNHVPVSSATNKFTLGKSRASFLDSLNVPRASSGTLFEQTEPERDSFMSSSSLNSMD 389
               N+ P  +A+++ +  +SR SFLDSL+VP+ASSG+     E +++  +S     + D
Sbjct: 341 RLPSNYEPPYTASSENSFRRSRPSFLDSLSVPKASSGSFLGHGERDKEPGLSDGFKFNKD 400

Query: 390 VLGSSPAQNPSMEKETTGAFSKTTTSNIPSAFDYLGNPTVSTSDRGDIRRLGSNESSIEN 449
              S   QN S++ +      +  + ++      L  P +      D   +G  ++++E 
Sbjct: 401 GPASFSFQN-SIKSDGFRTDERDGSESLT-----LQKPLMD-----DQPIIGIEDNTMER 449

Query: 450 QHGFYSTKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQ 507
           +H  YS+K NEDFAALEQHIEDLTQEKF+LQR+L+ASR L+ESLAAENSSLTDSYN+Q
Sbjct: 450 KHELYSSKQNEDFAALEQHIEDLTQEKFSLQRALDASRTLAESLAAENSSLTDSYNKQ 507

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224110692|ref|XP_002315603.1| predicted protein [Populus trichocarpa] gi|222864643|gb|EEF01774.1| predicted protein [Populus trichocarpa]

 Score =  201 bits (511), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 168/401 (41%), Positives = 233/401 (58%), Gaps = 43/401 (10%)

Query: 132 SNNQETSGSAGPVNVSNSQETKDVNNDFVIYSSGQGRLRDGIMSNQFLSLLPEASQDYDS 191
           SN  + SG AG  NV   QET+ +NN+  IY+  QG   D   S+  +      S  Y S
Sbjct: 48  SNRHDASGLAGSANVKYGQETEKMNNESGIYTGSQG---DRSSSDHSI-----VSGFYGS 99

Query: 192 SNSSKSGFQGIEESQSKGNDSFPKVPTLVNSGPSHDFVTKISPQNSVSTLFQS-KPSNAI 250
           S  S+S   G E  QSK N+   K  ++V++  +H F+T  S Q+S S+  Q+ KPS + 
Sbjct: 100 S--SQSSLYGRELLQSKENNISLK-HSVVDNDSTH-FLT--SYQSSASSEQQTFKPSYS- 152

Query: 251 ALGNGHSFHSSSEGTAHLTTSTGGSASEVGLNTPSTTNFSDPVSFNTGEGKPSNSASGLA 310
                 SF ++   +         S SEV  +      F+ P++ + GE   S+S S L 
Sbjct: 153 ------SFPATVVDSTLPNMKLRDSDSEVEQDM----RFNYPMNLDFGERNFSSSTSNLR 202

Query: 311 SLQSTPFKRSEYSGYNFDAGNSFNHVPVSSATNKFTLGKSRASFLDSLNVPRASSGTLFE 370
           ++  T  + SE +G+N                   +  +SR SFLDSLNV R+SS +  +
Sbjct: 203 TVHDTAAQTSESTGFN-----------------SNSSRRSRPSFLDSLNVSRSSSSSYVQ 245

Query: 371 QTEPERDSFMSSSSLNSMDVLGSSPAQNPSMEKETTGAFSKTTTSNIPSAFDYLGNPTVS 430
           +TEPE    +++S  N +D LGSS  Q   +E +T  + S+  +SN+PS+ D     +VS
Sbjct: 246 RTEPEDSFIINTSKSNGIDALGSSAFQKLPVETKTDRSLSEMASSNMPSSVDNATKFSVS 305

Query: 431 TSDRGDIRRLGSNESSIENQHGFYSTKHNEDFAALEQHIEDLTQEKFALQRSLEASRALS 490
            ++   I    +NE+ +E +H FY    NEDF+ALEQHIEDLTQEKF+LQR+LEASRAL+
Sbjct: 306 LTNGVGIMNTNTNENIMERKHEFYQPMQNEDFSALEQHIEDLTQEKFSLQRALEASRALA 365

Query: 491 ESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVE 531
           ESLAAENSSLTDSYNQQR VVNQLKS+ME+LQEEIK+ LV+
Sbjct: 366 ESLAAENSSLTDSYNQQRGVVNQLKSDMEQLQEEIKIHLVD 406

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|145338880|ref|NP_189040.3| protein BLISTER [Arabidopsis thaliana] gi|9294667|dbj|BAB03016.1| unnamed protein product [Arabidopsis thaliana] gi|332643320|gb|AEE76841.1| protein BLISTER [Arabidopsis thaliana]

 Score =  197 bits (502), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 199/574 (34%), Positives = 281/574 (48%), Gaps = 111/574 (19%)

Query: 1   MASAQVLPTSRKQEHLEAGKRKLEEFRKKKAAERAKKASSVSQPQASDFSLHDQHHLEAD 60
           MASA    +SR+QE +EAG+RKLE+FRK+KAAE+AKKAS  +QP            ++  
Sbjct: 1   MASAT---SSRRQEDVEAGRRKLEQFRKRKAAEKAKKASQNTQP------------VDNS 45

Query: 61  RVRVTDLDGAG--TSDGPDKAVVSLPLVMHNDDNKALKLAQQSQQVSLSDKRINSNCFEN 118
           +  V D DGAG   S+GP                  LK + +S       K + +  F N
Sbjct: 46  QQSVIDSDGAGASISNGP------------------LKQSAESTSNETHTKDVYNLSFSN 87

Query: 119 DLNSSSAYLAQTYSNNQETSGSAGPVNVSNSQETKDVNNDFVIYSSGQGRLRDGIMSNQF 178
                 +       + QE   S G V+ SNS E    + D  +              N  
Sbjct: 88  TAMDDGSKERSRQDDGQE---SVGKVDFSNSLELIGSSKDLTV--------------NTR 130

Query: 179 LSLLPEASQDYDSSNSSKSGFQGIEESQSKGNDSFPKVPTLVNSGPSHDFVTKISPQNSV 238
             ++P ++ D  SS                  +SF +  TL                   
Sbjct: 131 PEVVPYSNIDKQSS------------------ESFDRASTL----------------RET 156

Query: 239 STLFQSKPSNAIALGNGHSFHSSSEGTAHLTTSTGGSASEVGLNTPSTTNFSDPVSFNTG 298
           ++LF           +G    SS + +   TT   GS  EV  N   +      +     
Sbjct: 157 ASLFSGTSMQMDGFIHGSGLTSSRKDSLQPTTRMAGSFDEVAKNQQGSGELGGSIV---- 212

Query: 299 EGKPSNSASGLASLQSTPFKRSEYSGYNFDAGNSFNHVPVSSATNKFTLGKSRASFLDSL 358
             KP+ S+S L +   T  + SE S ++ +  +S    P++SA ++ T+ +SR SFLDSL
Sbjct: 213 -QKPTLSSSYLFNSPDTSSRPSEPSDFSVNITSS---SPLNSAKSEATVKRSRPSFLDSL 268

Query: 359 NVPRASSGTLFEQTEPERDSFMSSSS-LNSMDVLGSSPAQNPSMEKETTGAFSKTT-TSN 416
           N+ RA   T ++  E + D   SS S L+  D  G S     S  +++ G  S T+  S+
Sbjct: 269 NISRAPE-TQYQHPEIQADLVTSSGSQLSGSDGFGPSYI---SGRRDSNGPSSLTSGASD 324

Query: 417 IPSAFDYLGNPTVSTSDRGDIRRLGSNESSIENQHGFYSTKHNEDFAALEQHIEDLTQEK 476
            P+ F+   +     ++             +     F   K N+DF ALEQHIEDLTQEK
Sbjct: 325 YPNPFEKFRSSLYPAAN-----------GVMPGFTDFSMPKQNDDFTALEQHIEDLTQEK 373

Query: 477 FALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFR 536
           F+LQR L+ASRAL+ESLA+ENSS+TD+YNQQR +VNQLK +ME+L ++I+ Q+ ELES R
Sbjct: 374 FSLQRDLDASRALAESLASENSSMTDTYNQQRGLVNQLKDDMERLYQQIQAQMGELESVR 433

Query: 537 NEYANVRLECNAADERAKILASEVIGLEEKVRSL 570
            EYAN +LECNAADER++ILASEVI LE+K   L
Sbjct: 434 VEYANAQLECNAADERSQILASEVISLEDKALRL 467

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297831252|ref|XP_002883508.1| hypothetical protein ARALYDRAFT_898989 [Arabidopsis lyrata subsp. lyrata] gi|297329348|gb|EFH59767.1| hypothetical protein ARALYDRAFT_898989 [Arabidopsis lyrata subsp. lyrata]

 Score =  190 bits (483), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 123/271 (45%), Positives = 168/271 (61%), Gaps = 19/271 (7%)

Query: 301 KPSNSASGLASLQSTPFKRSEYSGYNFDAGNSFNHVPVSSATNKFTLGKSRASFLDSLNV 360
           KP+ S+S L     T  + SE S ++    N  +  P++SA ++  + +SR SFLDSLN+
Sbjct: 229 KPTLSSSYLFRSPDTSSRPSESSDFSV---NFTSSSPLNSAKSEAIVKRSRPSFLDSLNI 285

Query: 361 PRASSGTLFEQTEPERDSFMSSSS-LNSMDVLGSSPAQNPSMEKETTGAFSKTTTSNIPS 419
            RA   T ++  E + D   SS S L   D  G S     S  +++ G    +  S+ P+
Sbjct: 286 SRAPE-TQYQHPEIKADLVTSSGSQLTGSDGFGPSYI---SGRRDSNGPSLTSGASDSPN 341

Query: 420 AFDYLGNPTVSTSDRGDIRRLGSNESSIENQHGFYSTKHNEDFAALEQHIEDLTQEKFAL 479
            F+   +P    ++             +     F   K N+DF ALEQHIEDLTQEKF+L
Sbjct: 342 PFEKFRSPLYPAAN-----------GVMPGFTDFSMPKQNDDFTALEQHIEDLTQEKFSL 390

Query: 480 QRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEY 539
           QR L+ASRAL+ESLA+ENSS+TD+YNQQR +VNQLK +ME+L ++I+VQ+ ELES R EY
Sbjct: 391 QRDLDASRALAESLASENSSMTDTYNQQRGLVNQLKDDMERLYQQIQVQMGELESVRIEY 450

Query: 540 ANVRLECNAADERAKILASEVIGLEEKVRSL 570
           AN +LECNAADER++ILASEVI LE+K   L
Sbjct: 451 ANAQLECNAADERSQILASEVISLEDKALRL 481

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	570
TAIR|locus:2076071	714	BLI "BLISTER" [Arabidopsis tha	0.582	0.464	0.338	2.1e-38
DICTYBASE|DDB_G0271670	374	DDB_G0271670 [Dictyostelium di	0.566	0.863	0.172	4e-06
ZFIN|ZDB-GENE-080618-2	538	prdm1b "PR domain containing 1	0.592	0.628	0.212	0.00015
POMBASE|SPBC215.13	534	SPBC215.13 "sequence orphan" [	0.478	0.511	0.226	0.00019
CGD|CAL0006203	768	orf19.4906 [Candida albicans (	0.424	0.315	0.247	0.00037
UNIPROTKB|Q5APQ2	768	CaO19.4906 "Putative uncharact	0.424	0.315	0.247	0.00037
DICTYBASE|DDB_G0287399	486	DDB_G0287399 [Dictyostelium di	0.435	0.510	0.230	0.00099

TAIR|locus:2076071 BLI "BLISTER" [Arabidopsis thaliana (taxid:3702)]

 Score = 392 (143.0 bits), Expect = 2.1e-38, Sum P(2) = 2.1e-38
 Identities = 122/360 (33%), Positives = 176/360 (48%)

Query:   220 VNSGPSHDFVTKISPQNSVSTLFQSKPSNAIALGNGHSFHSSSEGTAHLTTSTGGSASEV 279
             VN+ P     + I  Q+S S    S      +L +G S     +G  H +  T      +
Sbjct:   127 VNTRPEVVPYSNIDKQSSESFDRASTLRETASLFSGTSMQM--DGFIHGSGLTSSRKDSL 184

Query:   280 GLNTPSTTNFSDPVSFNTGEG--------KPSNSASGLASLQSTPFKRSEYSGYNFDAGN 331
                T    +F +      G G        KP+ S+S L +   T  + SE S ++ +  +
Sbjct:   185 QPTTRMAGSFDEVAKNQQGSGELGGSIVQKPTLSSSYLFNSPDTSSRPSEPSDFSVNITS 244

Query:   332 SFNHVPVSSATNKFTLGKSRASFLDSLNVPRASSGTLFEQTEPERXXXXXXXXXXXXXXX 391
             S    P++SA ++ T+ +SR SFLDSLN+ RA   T ++   PE                
Sbjct:   245 SS---PLNSAKSEATVKRSRPSFLDSLNISRAPE-TQYQH--PEIQADLVTSSGSQLSGS 298

Query:   392 XXXPAQNPSMEKETTGAFSKTT-TSNIPSAFDYLGNPTVSTSDRGDIRRLGSNESSIENQ 450
                     S  +++ G  S T+  S+ P+ F+   +     ++ G +   G  + S+  Q
Sbjct:   299 DGFGPSYISGRRDSNGPSSLTSGASDYPNPFEKFRSSLYPAAN-GVMP--GFTDFSMPKQ 355

Query:   451 HGFYSTKHNEDFAALEQHIEDLTQEKFALQXXXXXXXXXXXXXXXXXXXXTDSYNQQRSV 510
                     N+DF ALEQHIEDLTQEKF+LQ                    TD+YNQQR +
Sbjct:   356 --------NDDFTALEQHIEDLTQEKFSLQRDLDASRALAESLASENSSMTDTYNQQRGL 407

Query:   511 VNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKVRSL 570
             VNQLK +ME+L ++I+ Q+ ELES R EYAN +LECNAADER++ILASEVI LE+K   L
Sbjct:   408 VNQLKDDMERLYQQIQAQMGELESVRVEYANAQLECNAADERSQILASEVISLEDKALRL 467

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0005634 "nucleus" evidence=IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IMP

GO:0009908 "flower development" evidence=IMP

GO:0009965 "leaf morphogenesis" evidence=IGI

GO:0010091 "trichome branching" evidence=IMP

GO:0048316 "seed development" evidence=IMP

GO:0048826 "cotyledon morphogenesis" evidence=IMP

GO:0051781 "positive regulation of cell division" evidence=IMP

GO:0005829 "cytosol" evidence=IDA

DICTYBASE|DDB_G0271670 DDB_G0271670 [Dictyostelium discoideum (taxid:44689)]

 Score = 137 (53.3 bits), Expect = 4.0e-06, P = 4.0e-06
 Identities = 56/325 (17%), Positives = 128/325 (39%)

Query:    96 KLAQQSQQVSLSDKRINSNCFENDLNSSSAYLAQTYSNNQETSGSAGPVNVSNSQETKDV 155
             +L + ++   + D  + S  F N L++SS+  + + S++  +S S+   + S+S  +   
Sbjct:    41 QLEKTNKMAEVGDLGVAS--FLNILDTSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 98

Query:   156 NNDFVIYSSGQGRLRDGIMSNQFLSLLPEAXXXXXXXXXXXXGFQGIEESQSKGNDSFPK 215
             ++     SS          S+   S    +                   S S  + S   
Sbjct:    99 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 158

Query:   216 VPTLVNSGPSHDFVTKISPQNSVSTLFQSKPSNAIALGNGHSFHSSSEGTAHLTTSTGGS 275
               +  +S  S    +  S  +S S+   S  S++ +  +  S  SSS  ++  ++S+  S
Sbjct:   159 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 218

Query:   276 ASEVGLNTPSTTNFSDPVSFNTGEGKPSNSASGLASLQSTPFKRSEYSGYNFDAGNSFNH 335
             +S    ++ S+++ S   S ++     S+S+S  +S  S+    S  S  +  + +S + 
Sbjct:   219 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 278

Query:   336 VPVSSATNKFTLGKSRASFLDSLNVPRASSGTLFEQTEPERXXXXXXXXXXXXXXXXXXP 395
                SS+++  +   S +S   S +   +SS +    +                       
Sbjct:   279 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 338

Query:   396 AQNPSMEKETTGAFSKTTTSNIPSA 420
             + + S    ++ + S +++S+  S+
Sbjct:   339 SSSSSSSSSSSSSSSSSSSSSSSSS 363

GO:0005576 "extracellular region" evidence=IEA

ZFIN|ZDB-GENE-080618-2 prdm1b "PR domain containing 1b, with ZNF domain" [Danio rerio (taxid:7955)]

 Score = 125 (49.1 bits), Expect = 0.00015, P = 0.00015
 Identities = 78/367 (21%), Positives = 140/367 (38%)

Query:    10 SRKQEHLEAGXXXXXXXXXXXXXXXXXXXSSVSQPQASDFSLHDQHHLEADRVRVTDLDG 69
             S+K+ HLE G                   S +S+P+++D S+H+   L   +  V  +  
Sbjct:     2 SQKRSHLEHGEYSNAASLTQE--------SYISRPESTDSSIHESSSLFIPKSPVFSIPE 53

Query:    70 AGTSDGPDKAVVSLPLVMHNDDNKALKLAQQSQQVSLSDKRINSNCFENDLNSSSAYLAQ 129
             +  S  P     S+P V  + D + L  +   +    S  +I+++      ++S   ++ 
Sbjct:    54 SSFSSDPQNPTASIPQVSSSSDPQ-LSTSSIPESSFSSGPQISTSSIPQSTSTSVPQIS- 111

Query:   130 TYSNNQETSGSAGPVNVSNSQETKDVNNDFVIYSS--GQGRLRDGIMSNQFLSLLPEAXX 187
             T S  Q  S S   ++ S+  ++  V+   +  SS        D  +S    SL+PE   
Sbjct:   112 TSSIPQSASTSVSQISTSSVPDSSSVSVPQIFISSVPQSSSSSDPQIST---SLIPEFSS 168

Query:   188 XXXXXXXXXXGFQGIEESQSK-GNDSFPK-----VPTLVNSGPSHDFVTKISPQNSVSTL 241
                         Q    S  +    S P+     VP +  S       T + PQ S S++
Sbjct:   169 SSDPQIFTSSILQSTSTSVPQISTSSIPQSSSSSVPQISTSSIHQSSPTSV-PQMSTSSI 227

Query:   242 FQSKPSNAIALGNGHSFHSSSEGTAHLTTSTGGSASEVGLNTPSTTNFSDPVSFNTGEGK 301
              Q   S+   +       SSS     ++TS+   +S   +   ST++     S +  +  
Sbjct:   228 PQGSSSSVPQISTSSIPQSSSSSVPQISTSSIPQSSPTSVPQISTSSIPQGSSSSVPQIS 287

Query:   302 PSN---SASGLASLQSTPFKRSEYSGYNFDAGNSFNHVPVSSATNKFTLGKSRASFLDS- 357
              S+   S++      STP      S Y   +  S  H    S  +  T+ +S ++  +S 
Sbjct:   288 ISSIPQSSTNSVPHSSTPLVHESSSSYIPQSSTSTMH---DSFNSDSTMTQSFSTNTNSA 344

Query:   358 LNVPRAS 364
              N+P  S
Sbjct:   345 FNLPEDS 351

GO:0005737 "cytoplasm" evidence=IEA

GO:0018149 "peptide cross-linking" evidence=IEA

POMBASE|SPBC215.13 SPBC215.13 "sequence orphan" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 124 (48.7 bits), Expect = 0.00019, P = 0.00019
 Identities = 64/283 (22%), Positives = 119/283 (42%)

Query:    94 ALKLAQQSQQVSLSDKRINSNCFENDLNSSSAYLAQT--YSNNQETSGSAGPVNVSNSQE 151
             +L  +  S Q S+S    ++       ++SS+YL+ +   S++   S S+     S+S  
Sbjct:   177 SLSSSTSSSQPSVSSTSSSTFSSAAPTSTSSSYLSSSSVVSSSSSPSSSSSSTLTSSSLS 236

Query:   152 TKDVNNDFVIYSSGQGRLRDGIMSNQFLSLLPEAXXXXXXXXXXXXGFQGIEE-SQSKGN 210
             T  + +     SS    L     S+   S    +                    S S  +
Sbjct:   237 TSSIPSTSSSSSSTSSSLSSSSSSSTASSSSSSSSIISSSSSSSSSPTSTSSTISSSSSS 296

Query:   211 DSFPKVPTLV---NSGPSHDFVTKISPQN-SVSTLFQSKP-SNAIALGNGHSFHSSSEGT 265
              S P   +     +S  S  F + +S  + S S+ F S P S++  + +  S  SSS  +
Sbjct:   297 SSSPTSTSSTISSSSSSSSSFSSTLSSSSMSSSSSFSSSPTSSSSTISSSSSSPSSSSFS 356

Query:   266 AHLTTSTGGSASEVGLNTPSTTNFSDPVSFNTGEGKPSNSASGLASLQSTPFKRSEYSGY 325
             +  ++S   S+    +++ S+T+ S   S ++   +P++S+S  +SL S     S  S  
Sbjct:   357 STTSSSKSSSSFSSTVSSSSSTSSSTLTSSSSSSSRPASSSSHSSSLSSHKSSSSSKSS- 415

Query:   326 NFDAGNSFNHVPVSSATNKFTLGKSRASFLDSLNVPRASSGTL 368
             +    ++F H   SS ++  +   S +S L S  +  ASS +L
Sbjct:   416 SAPVSSAFYHNSTSSRSSSHSSSHSLSS-LSSKPILTASSSSL 457

GO:0003674 "molecular_function" evidence=ND

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0005886 "plasma membrane" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0009986 "cell surface" evidence=NAS

GO:0031225 "anchored to membrane" evidence=IEA

CGD|CAL0006203 orf19.4906 [Candida albicans (taxid:5476)]

 Score = 130 (50.8 bits), Expect = 0.00037, Sum P(2) = 0.00037
 Identities = 64/259 (24%), Positives = 105/259 (40%)

Query:   200 QGIEESQ-SKGNDSFPKVPTLVNSGPSHDFVTKISPQNSVSTLFQSKPSNAIALGNGHSF 258
             Q  ++SQ S+   S  + P+   S  +  FV+      SVS    S  S +       S 
Sbjct:   134 QQSQQSQPSQSPTSTSQAPSSTMSDNNTSFVSPSDTSLSVSATTTSSSSTS------SSS 187

Query:   259 HSSSEGTAHLTTSTGGSASEVGL-NTPSTTNFSDPVSFNTGEGKPSNSASGLASLQSTPF 317
              SS+  T+ +TTS+  S+S     ++ S+T FS   +  T     S+S++  +S+ ST  
Sbjct:   188 SSSTPSTSDVTTSSSASSSPSSTTSSSSSTAFSSSTT-ETSSSATSSSSTTSSSISSTQS 246

Query:   318 KRSEYSGYNFDAGNSFNHVPVSSATNKFTLGKSRASFLDSLNVPRASSGTLFEQTEPERX 377
               S  S  +F +  + +    SS ++ F+   S +S   S ++   SS   F  T     
Sbjct:   247 NTSSSSNTSFSSSTTASSSFSSSTSSSFS--PSPSSTTSSSSISSTSSS--F--TTSSDT 300

Query:   378 XXXXXXXXXXXXXXXXXPAQNPSMEKETTGAFSKTTTSNIPSAFDYLGNPTVSTSDRGDI 437
                               + N S    ++   S +TTS+IPS+ +     T ++S   D 
Sbjct:   301 SASSSSSSSVSPSSTTSSSSNFSSSSSSSTITSSSTTSSIPSSSEVSSTSTSASSSSSDS 360

Query:   438 RRLGSNESSIENQHGFYST 456
                 S  SS E      ST
Sbjct:   361 ST--STSSSSETDQSSSST 377

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0000082 "G1/S transition of mitotic cell cycle" evidence=IEA

GO:0051726 "regulation of cell cycle" evidence=IEA

GO:0010628 "positive regulation of gene expression" evidence=IEA

UNIPROTKB|Q5APQ2 CaO19.4906 "Putative uncharacterized protein" [Candida albicans SC5314 (taxid:237561)]

 Score = 130 (50.8 bits), Expect = 0.00037, Sum P(2) = 0.00037
 Identities = 64/259 (24%), Positives = 105/259 (40%)

Query:   200 QGIEESQ-SKGNDSFPKVPTLVNSGPSHDFVTKISPQNSVSTLFQSKPSNAIALGNGHSF 258
             Q  ++SQ S+   S  + P+   S  +  FV+      SVS    S  S +       S 
Sbjct:   134 QQSQQSQPSQSPTSTSQAPSSTMSDNNTSFVSPSDTSLSVSATTTSSSSTS------SSS 187

Query:   259 HSSSEGTAHLTTSTGGSASEVGL-NTPSTTNFSDPVSFNTGEGKPSNSASGLASLQSTPF 317
              SS+  T+ +TTS+  S+S     ++ S+T FS   +  T     S+S++  +S+ ST  
Sbjct:   188 SSSTPSTSDVTTSSSASSSPSSTTSSSSSTAFSSSTT-ETSSSATSSSSTTSSSISSTQS 246

Query:   318 KRSEYSGYNFDAGNSFNHVPVSSATNKFTLGKSRASFLDSLNVPRASSGTLFEQTEPERX 377
               S  S  +F +  + +    SS ++ F+   S +S   S ++   SS   F  T     
Sbjct:   247 NTSSSSNTSFSSSTTASSSFSSSTSSSFS--PSPSSTTSSSSISSTSSS--F--TTSSDT 300

Query:   378 XXXXXXXXXXXXXXXXXPAQNPSMEKETTGAFSKTTTSNIPSAFDYLGNPTVSTSDRGDI 437
                               + N S    ++   S +TTS+IPS+ +     T ++S   D 
Sbjct:   301 SASSSSSSSVSPSSTTSSSSNFSSSSSSSTITSSSTTSSIPSSSEVSSTSTSASSSSSDS 360

Query:   438 RRLGSNESSIENQHGFYST 456
                 S  SS E      ST
Sbjct:   361 ST--STSSSSETDQSSSST 377

GO:0003674 "molecular_function" evidence=ND

DICTYBASE|DDB_G0287399 DDB_G0287399 [Dictyostelium discoideum (taxid:44689)]

 Score = 117 (46.2 bits), Expect = 0.00099, P = 0.00099
 Identities = 59/256 (23%), Positives = 106/256 (41%)

Query:   205 SQSKGNDSFPKVPTLVNSGPSHDFVTKISPQNSVSTLFQSKPSNAIALGN--GHSFHSSS 262
             S S G+ +     T+ +SG + +  +  S   + S+   S  S+  + G+  G S  S S
Sbjct:    51 SSSSGSGTGQSSGTVSSSGSASNNTSSGSQSGNASSGSSSGSSSGSSSGSSSGSSSGSQS 110

Query:   263 EGTAHLTTSTGGSASEVGLNTPSTTNFSDPVSFNTGEGKPSNS-ASGLASLQSTPFKRSE 321
                +  ++S+G S S+ G  +  T++ S   S ++  G  S+  +SG  S   +    S 
Sbjct:   111 GNASSGSSSSGSSGSQSGNASSGTSSGSSSSSGSSQSGNASSGPSSGTTSSSGSSQSESS 170

Query:   322 YSGYNFDAGNSFNHVPVSSATNKFTLGKSRASFLDSLNVPRASSGTLFEQTEPERXXXXX 381
              SG N  +G S +    SS +++    +S +S   S +    SSGT       +      
Sbjct:   171 QSG-NASSGPS-SGTTSSSGSSQSESSQSESSQSGSAS-SGPSSGTTSSSGSSQSDSSSF 227

Query:   382 XXXXXXXXXXXXXPAQNPSMEKETTGAFSKTTTSNIPSAFDYLGNPTVSTSDR--GDIRR 439
                           +Q+ S    TTG+ S ++  ++  +    G+ ++S SD   G    
Sbjct:   228 TTTGSQGSSGSSGSSQSDSSSFTTTGSGSGSSQDSMSGSDSMSGSDSMSGSDSMSGSSFT 287

Query:   440 LGSNESSIENQHGFYS 455
              G++  S     G YS
Sbjct:   288 GGNSGGSTSTGSGSYS 303


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.306   0.123   0.332    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      570       501   0.00085  119 3  11 23  0.39    35
                                                     35  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  7
  No. of states in DFA:  579 (62 KB)
  Total size of DFA:  243 KB (2132 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  50.62u 0.10s 50.72t   Elapsed:  00:00:02
  Total cpu time:  50.62u 0.10s 50.72t   Elapsed:  00:00:02
  Start:  Mon May 20 20:55:39 2013   End:  Mon May 20 20:55:41 2013

GO:0005576 "extracellular region" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	570
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	3e-04
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	4e-04
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	4e-04
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	0.001
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	0.001
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	0.003
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	0.003
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	0.003

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 43.2 bits (102), Expect = 3e-04
 Identities = 33/140 (23%), Positives = 60/140 (42%), Gaps = 3/140 (2%)

Query: 434 RGDIRRLGSNESSIENQHGFYSTKHNEDFAALEQ---HIEDLTQEKFALQRSLEASRALS 490
              +  L      +E Q      +       LEQ    +E+L +E   L+  LE  +   
Sbjct: 701 EDLLEELRRQLEELERQLEELKRELAALEEELEQLQSRLEELEEELEELEEELEELQERL 760

Query: 491 ESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAAD 550
           E L  E  SL ++  + +  + +L+ + + LQEE++    ELE        +  E  + +
Sbjct: 761 EELEEELESLEEALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLE 820

Query: 551 ERAKILASEVIGLEEKVRSL 570
           +R + L  E+  LEE++  L
Sbjct: 821 QRRERLEQEIEELEEEIEEL 840

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 43.2 bits (102), Expect = 4e-04
 Identities = 29/114 (25%), Positives = 49/114 (42%), Gaps = 7/114 (6%)

Query: 457 KHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKS 516
              E  A L++ IE+L +++ ALQ  LE      E       +L            +L+ 
Sbjct: 769 SLEEALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQ 828

Query: 517 EMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKVRSL 570
           E+E+L+EEI+    ELE    +   +  E    ++  + L  E+  LE +   L
Sbjct: 829 EIEELEEEIE----ELEE---KLDELEEELEELEKELEELKEELEELEAEKEEL 875

Length = 1163

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 43.1 bits (102), Expect = 4e-04
 Identities = 32/136 (23%), Positives = 55/136 (40%), Gaps = 15/136 (11%)

Query: 435 GDIRRLGSNESSIENQHGFYSTKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLA 494
                L +   +++      +   NE+ A L + +E L +   A +R LE      E L+
Sbjct: 793 QLKEELKALREALDELRAELTL-LNEEAANLRERLESLERRIAATERRLEDLEEQIEELS 851

Query: 495 AENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAK 554
            +  SL               +E+E+L+E I+    ELE+  NE A++           +
Sbjct: 852 EDIESLA--------------AEIEELEELIEELESELEALLNERASLEEALALLRSELE 897

Query: 555 ILASEVIGLEEKVRSL 570
            L+ E+  LE K   L
Sbjct: 898 ELSEELRELESKRSEL 913

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 41.6 bits (98), Expect = 0.001
 Identities = 26/112 (23%), Positives = 48/112 (42%)

Query: 459 NEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEM 518
            +D A LE  +E L +    L + L    A  E L        +   +  + + +L++++
Sbjct: 732 RKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQI 791

Query: 519 EKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKVRSL 570
           E+L+EE+K     L+  R E   +  E     ER + L   +   E ++  L
Sbjct: 792 EQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDL 843

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 41.6 bits (98), Expect = 0.001
 Identities = 33/120 (27%), Positives = 47/120 (39%), Gaps = 9/120 (7%)

Query: 460 EDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEME 519
           E+ A LE+ +E+L +E  +L+  LE   A  E L +    L +     RS V QL+ ++ 
Sbjct: 337 EELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIA 396

Query: 520 KLQEEIKVQLVELESF---------RNEYANVRLECNAADERAKILASEVIGLEEKVRSL 570
            L  EI+     LE             E    +LE     E    L      LEE    L
Sbjct: 397 SLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEEL 456

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 40.5 bits (95), Expect = 0.003
 Identities = 30/112 (26%), Positives = 50/112 (44%)

Query: 459 NEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEM 518
                 LE+ ++ L  E  +L+  LE  R   E L  +   L          + QL+S +
Sbjct: 680 EAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRELAALEEELEQLQSRL 739

Query: 519 EKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKVRSL 570
           E+L+EE++    ELE  +     +  E  + +E    L  E+  LEEK ++L
Sbjct: 740 EELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEIEELEEKRQAL 791

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 40.1 bits (94), Expect = 0.003
 Identities = 31/140 (22%), Positives = 58/140 (41%), Gaps = 11/140 (7%)

Query: 434 RGDIRRLGSNESSIENQHGFYSTKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESL 493
             ++        ++E +      +       LEQ IE+L +E   L+  L+      E L
Sbjct: 799 EEELEEAERRLDALERELESLEQRRER----LEQEIEELEEEIEELEEKLDELEEELEEL 854

Query: 494 AAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKV---QLVELESFRNEY----ANVRLEC 546
             E   L +   +  +   +L+ E+++L+EE +    +L ELES   E       +R   
Sbjct: 855 EKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAELKEEIEKLRERL 914

Query: 547 NAADERAKILASEVIGLEEK 566
              + + + L  E+  LEE+
Sbjct: 915 EELEAKLERLEVELPELEEE 934

Length = 1163

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 40.0 bits (94), Expect = 0.003
 Identities = 27/111 (24%), Positives = 48/111 (43%)

Query: 457 KHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKS 516
           +  E    LE+ I +L +    L++ LE      E L  E   L+   +  R  + +L++
Sbjct: 681 ELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEA 740

Query: 517 EMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKV 567
           E+E+L+E I     EL     E   +      A+E      +E+  LE ++
Sbjct: 741 EVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQI 791

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	570
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	96.74
smart00787	312	Spc7 Spc7 kinetochore protein. This domain is foun	95.53
PF08614	194	ATG16: Autophagy protein 16 (ATG16); InterPro: IPR	95.48
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	95.36
PF10186	302	Atg14: UV radiation resistance protein and autopha	95.22
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	95.18
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	95.15
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	95.08
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	94.25
PF00038	312	Filament: Intermediate filament protein; InterPro:	94.24
PF11932	251	DUF3450: Protein of unknown function (DUF3450); In	93.98
PRK09039	343	hypothetical protein; Validated	93.85
PRK11637	428	AmiB activator; Provisional	93.78
PRK02224	880	chromosome segregation protein; Provisional	93.72
PRK11637	428	AmiB activator; Provisional	93.68
PF09730	717	BicD: Microtubule-associated protein Bicaudal-D; I	93.44
PRK10884	206	SH3 domain-containing protein; Provisional	93.29
PF14197	69	Cep57_CLD_2: Centrosome localisation domain of PPC	92.93
PF09304	107	Cortex-I_coil: Cortexillin I, coiled coil; InterPr	92.9
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	92.26
PHA02562	562	46 endonuclease subunit; Provisional	92.07
TIGR01843	423	type_I_hlyD type I secretion membrane fusion prote	91.97
PF08647	96	BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR01395	91.83
PF04111	314	APG6: Autophagy protein Apg6; InterPro: IPR007243	91.82
PF12325	120	TMF_TATA_bd: TATA element modulatory factor 1 TATA	91.45
PF04849	306	HAP1_N: HAP1 N-terminal conserved region; InterPro	90.83
COG1579	239	Zn-ribbon protein, possibly nucleic acid-binding [	90.83
PRK09039	343	hypothetical protein; Validated	90.83
PHA02562	562	46 endonuclease subunit; Provisional	90.82
PF00769	246	ERM: Ezrin/radixin/moesin family; InterPro: IPR011	90.62
PF04156	191	IncA: IncA protein; InterPro: IPR007285 Chlamydia	90.52
PF04111	314	APG6: Autophagy protein Apg6; InterPro: IPR007243	90.47
PF10186	302	Atg14: UV radiation resistance protein and autopha	90.23
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	90.08
PF09789	319	DUF2353: Uncharacterized coiled-coil protein (DUF2	89.99
PF14197	69	Cep57_CLD_2: Centrosome localisation domain of PPC	89.91
PF13815	118	Dzip-like_N: Iguana/Dzip1-like DAZ-interacting pro	89.48
TIGR01843	423	type_I_hlyD type I secretion membrane fusion prote	89.34
PRK02224	880	chromosome segregation protein; Provisional	89.26
PF05701	522	WEMBL: Weak chloroplast movement under blue light;	89.07
PRK10884	206	SH3 domain-containing protein; Provisional	89.06
PF11932	251	DUF3450: Protein of unknown function (DUF3450); In	89.05
KOG2264	907	consensus Exostosin EXT1L [Signal transduction mec	89.02
PF06005	72	DUF904: Protein of unknown function (DUF904); Inte	88.61
PF05911	769	DUF869: Plant protein of unknown function (DUF869)	88.55
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	88.48
PF02050	123	FliJ: Flagellar FliJ protein; InterPro: IPR012823	88.38
PRK04863	1486	mukB cell division protein MukB; Provisional	88.21
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	88.12
KOG4005	292	consensus Transcription factor XBP-1 [Transcriptio	88.01
KOG0161	1930	consensus Myosin class II heavy chain [Cytoskeleto	87.64
PF08614	194	ATG16: Autophagy protein 16 (ATG16); InterPro: IPR	87.55
KOG0250	1074	consensus DNA repair protein RAD18 (SMC family pro	87.3
PF02050	123	FliJ: Flagellar FliJ protein; InterPro: IPR012823	87.26
PF07926	132	TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro:	87.24
PRK09973	85	putative outer membrane lipoprotein; Provisional	86.91
PF04728	56	LPP: Lipoprotein leucine-zipper; InterPro: IPR0068	86.86
PF12325	120	TMF_TATA_bd: TATA element modulatory factor 1 TATA	86.61
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	86.35
smart00787	312	Spc7 Spc7 kinetochore protein. This domain is foun	86.35
cd07666	243	BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of S	86.33
KOG0933	1174	consensus Structural maintenance of chromosome pro	86.05
TIGR03007	498	pepcterm_ChnLen polysaccharide chain length determ	85.67
PF04012	221	PspA_IM30: PspA/IM30 family; InterPro: IPR007157 T	85.55
PF12777	344	MT: Microtubule-binding stalk of dynein motor; Int	85.53
PRK15396	78	murein lipoprotein; Provisional	84.81
PF06005	72	DUF904: Protein of unknown function (DUF904); Inte	84.8
PF12718	143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	84.51
PF07200	150	Mod_r: Modifier of rudimentary (Mod(r)) protein; I	84.49
COG3074	79	Uncharacterized protein conserved in bacteria [Fun	84.17
PF05700	221	BCAS2: Breast carcinoma amplified sequence 2 (BCAS	84.14
PRK10698	222	phage shock protein PspA; Provisional	83.97
PF12128	1201	DUF3584: Protein of unknown function (DUF3584); In	83.58
PF05615	139	THOC7: Tho complex subunit 7; InterPro: IPR008501	83.43
KOG0980	980	consensus Actin-binding protein SLA2/Huntingtin-in	83.36
PRK15422	79	septal ring assembly protein ZapB; Provisional	83.15
PF10046	99	BLOC1_2: Biogenesis of lysosome-related organelles	83.07
cd07653	251	F-BAR_CIP4-like The F-BAR (FES-CIP4 Homology and B	82.63
COG1579	239	Zn-ribbon protein, possibly nucleic acid-binding [	82.62
KOG0933	1174	consensus Structural maintenance of chromosome pro	82.52
PF15070	617	GOLGA2L5: Putative golgin subfamily A member 2-lik	82.21
cd07647	239	F-BAR_PSTPIP The F-BAR (FES-CIP4 Homology and Bin/	82.2
TIGR02894	161	DNA_bind_RsfA transcription factor, RsfA family. I	82.17
TIGR02680	1353	conserved hypothetical protein TIGR02680. Members	82.04
PF10473	140	CENP-F_leu_zip: Leucine-rich repeats of kinetochor	82.0
PF04849	306	HAP1_N: HAP1 N-terminal conserved region; InterPro	81.89
PF00769	246	ERM: Ezrin/radixin/moesin family; InterPro: IPR011	81.7
PF12128	1201	DUF3584: Protein of unknown function (DUF3584); In	81.43
PRK05689	147	fliJ flagellar biosynthesis chaperone; Validated	81.36
PF11559	151	ADIP: Afadin- and alpha -actinin-Binding; InterPro	81.26
PF00038	312	Filament: Intermediate filament protein; InterPro:	81.24
KOG0980	980	consensus Actin-binding protein SLA2/Huntingtin-in	81.23
PF04728	56	LPP: Lipoprotein leucine-zipper; InterPro: IPR0068	81.15
PF07200	150	Mod_r: Modifier of rudimentary (Mod(r)) protein; I	81.11
PRK03918	880	chromosome segregation protein; Provisional	80.84
KOG0161	1930	consensus Myosin class II heavy chain [Cytoskeleto	80.66
PF05529	192	Bap31: B-cell receptor-associated protein 31-like	80.66
KOG0976	1265	consensus Rho/Rac1-interacting serine/threonine ki	80.57
PF07106	169	TBPIP: Tat binding protein 1(TBP-1)-interacting pr	80.33
PRK00409	782	recombination and DNA strand exchange inhibitor pr	80.17

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=96.74  E-value=0.041  Score=55.73  Aligned_cols=106  Identities=23%  Similarity=0.354  Sum_probs=83.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHH----HHHHHHHHHHHHHHHHhhhhHHH
Q 008304          463 AALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLK----SEMEKLQEEIKVQLVELESFRNE  538 (570)
Q Consensus       463 AaLqQhIeDLT~EKfaLqRaLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk----~dmErLq~Ei~aQl~~LEs~~~E  538 (570)
                      ..|+.|++.|-+++-.|...+++..++...|.....+|....+.....+.++.    .+++.|+++|..+..++++.+.+
T Consensus       152 ~~L~~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~e~~~~D~~eL~~lr~eL~~~~~~i~~~k~~  231 (325)
T PF08317_consen  152 EGLEENLELLQEDYAKLDKQLEQLDELLPKLRERKAELEEELENLKQLVEEIESCDQEELEALRQELAEQKEEIEAKKKE  231 (325)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45678888888889899999999999999999999999999988887777553    67888888888888888877777


Q ss_pred             HHHHHhhhhhHHHHHHHHHHhhhhhhhhhh
Q 008304          539 YANVRLECNAADERAKILASEVIGLEEKVR  568 (570)
Q Consensus       539 rdaArle~~aA~ERak~LAaEVV~LEEk~l  568 (570)
                      .+..+.+..+-.+....+..+.-.|++.+.
T Consensus       232 l~el~~el~~l~~~i~~~~~~k~~l~~eI~  261 (325)
T PF08317_consen  232 LAELQEELEELEEKIEELEEQKQELLAEIA  261 (325)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            777777777766666666666666555543

>smart00787 Spc7 Spc7 kinetochore protein

Probab=95.53  E-value=0.34  Score=49.85  Aligned_cols=104  Identities=17%  Similarity=0.313  Sum_probs=81.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHH----HHHHHHHHHHHHHHHHhhhhHHHH
Q 008304          464 ALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLK----SEMEKLQEEIKVQLVELESFRNEY  539 (570)
Q Consensus       464 aLqQhIeDLT~EKfaLqRaLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk----~dmErLq~Ei~aQl~~LEs~~~Er  539 (570)
                      .|+.|++.|-.++-.|...++....+...|-.....|....++......++.    +++.+++++|+.+..+++..+.+.
T Consensus       148 ~L~~~~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e~~~~d~~eL~~lk~~l~~~~~ei~~~~~~l  227 (312)
T smart00787      148 GLDENLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLEDELEDCDPTELDRAKEKLKKLLQEIMIKVKKL  227 (312)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4558889999999999999999999999999999999999998888888874    478888888888888888877777


Q ss_pred             HHHHhhhhhHHHHHHHHHHhhhhhhhhh
Q 008304          540 ANVRLECNAADERAKILASEVIGLEEKV  567 (570)
Q Consensus       540 daArle~~aA~ERak~LAaEVV~LEEk~  567 (570)
                      ...+.+..+-..+-.....+...|++.+
T Consensus       228 ~e~~~~l~~l~~~I~~~~~~k~e~~~~I  255 (312)
T smart00787      228 EELEEELQELESKIEDLTNKKSELNTEI  255 (312)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7777666666665555555555555444

This domain is found in cell division proteins which are required for kinetochore-spindle association.

>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=95.48  E-value=0.11  Score=49.16  Aligned_cols=110  Identities=22%  Similarity=0.268  Sum_probs=63.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 008304          460 EDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEY  539 (570)
Q Consensus       460 ddFAaLqQhIeDLT~EKfaLqRaLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LEs~~~Er  539 (570)
                      .-.+.|++-+.++-+.|-.|+.-|-....-.+.|-.+..+...+-+.....+..|+.++..|..+|+.....++.+..|+
T Consensus        74 ~~~~~l~~ELael~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~  153 (194)
T PF08614_consen   74 QKLAKLQEELAELYRSKGELAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDEL  153 (194)
T ss_dssp             ----------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccccccccccccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455555566666677777777777777777777778888888888899999999999999999999999999999999


Q ss_pred             HHHHhhhhhHHHHHHHHHHhhhhhhhhhhc
Q 008304          540 ANVRLECNAADERAKILASEVIGLEEKVRS  569 (570)
Q Consensus       540 daArle~~aA~ERak~LAaEVV~LEEk~lq  569 (570)
                      .+.+++++.+.+|.+.|=.|=-.|=+|.|+
T Consensus       154 ~~L~l~~~~~e~k~~~l~~En~~Lv~Rwm~  183 (194)
T PF08614_consen  154 QALQLQLNMLEEKLRKLEEENRELVERWMQ  183 (194)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999988777777653

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=95.36  E-value=0.28  Score=49.86  Aligned_cols=106  Identities=25%  Similarity=0.357  Sum_probs=72.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 008304          464 ALEQHIEDLTQEKFALQRSLEASRALSESLA----AENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEY  539 (570)
Q Consensus       464 aLqQhIeDLT~EKfaLqRaLeks~~laEsLA----~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LEs~~~Er  539 (570)
                      .|...+.+|...+-+|.+.+..-+++++.+.    .|-.++-...-++...+.+.+.++++|+.++..-...++.+.++.
T Consensus       174 ~l~~~~~~l~~~~~~L~~e~~~Lk~~~~e~~~~D~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k  253 (325)
T PF08317_consen  174 QLDELLPKLRERKAELEEELENLKQLVEEIESCDQEELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQK  253 (325)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445566677777888888888888877765    344566666667777777777777788877777777777777777


Q ss_pred             HHHHhhhhhHH---HHHH-HHHHhhhhhhhhhhc
Q 008304          540 ANVRLECNAAD---ERAK-ILASEVIGLEEKVRS  569 (570)
Q Consensus       540 daArle~~aA~---ERak-~LAaEVV~LEEk~lq  569 (570)
                      ...+.+..+|.   |..| -...||..|-.++..
T Consensus       254 ~~l~~eI~e~~~~~~~~r~~t~~Ev~~Lk~~~~~  287 (325)
T PF08317_consen  254 QELLAEIAEAEKIREECRGWTRSEVKRLKAKVDA  287 (325)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence            77766666665   2222 356777777766543

>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking

Probab=95.22  E-value=0.82  Score=43.68  Aligned_cols=80  Identities=20%  Similarity=0.306  Sum_probs=58.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008304          461 DFAALEQHIEDLTQEKFALQRSLEASRA--------LSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVEL  532 (570)
Q Consensus       461 dFAaLqQhIeDLT~EKfaLqRaLeks~~--------laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~L  532 (570)
                      .+..|+..|.++-.++-.|++.++..-+        -.+.+..+-..+.++.+.....+.+++..++++++++......|
T Consensus        21 ~L~~~~~~l~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l  100 (302)
T PF10186_consen   21 RLLELRSELQQLKEENEELRRRIEEILESDSNGQLLEIQQLKREIEELRERLERLRERIERLRKRIEQKRERLEELRESL  100 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4788888888888888888887776433        66777777777777777777777777777777777777666666


Q ss_pred             hhhHHHHH
Q 008304          533 ESFRNEYA  540 (570)
Q Consensus       533 Es~~~Erd  540 (570)
                      +.-+....
T Consensus       101 ~~~~~~l~  108 (302)
T PF10186_consen  101 EQRRSRLS  108 (302)
T ss_pred             HHHHHHHH
Confidence            66554444

In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=95.18  E-value=0.52  Score=52.26  Aligned_cols=40  Identities=28%  Similarity=0.387  Sum_probs=18.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 008304          460 EDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSS  499 (570)
Q Consensus       460 ddFAaLqQhIeDLT~EKfaLqRaLeks~~laEsLA~ENsA  499 (570)
                      .+...|++.++++..+--.+...+...+.-.++|..+-..
T Consensus       677 ~e~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~  716 (1179)
T TIGR02168       677 REIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQ  716 (1179)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445555555555555444444444444444444433333

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=95.15  E-value=0.48  Score=52.54  Aligned_cols=67  Identities=16%  Similarity=0.266  Sum_probs=33.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 008304          461 DFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKV  527 (570)
Q Consensus       461 dFAaLqQhIeDLT~EKfaLqRaLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~a  527 (570)
                      +...|++.|++|..+.-.++..++..++-.+.+..+-..+.....+....+.+++.++++++.+++.
T Consensus       671 ~~~~l~~e~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  737 (1179)
T TIGR02168       671 SILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLAR  737 (1179)
T ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445555555555555555555555555555555555555555544444444444433333333333

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=95.08  E-value=0.56  Score=52.44  Aligned_cols=48  Identities=13%  Similarity=0.180  Sum_probs=17.9

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhHHHHHHHHHHhhh
Q 008304          514 LKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVI  561 (570)
Q Consensus       514 Lk~dmErLq~Ei~aQl~~LEs~~~ErdaArle~~aA~ERak~LAaEVV  561 (570)
                      |+.++++|+.++......++.+..++...+.++..+.++-..+-.++-
T Consensus       432 l~~~~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~l~  479 (1164)
T TIGR02169       432 IEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYD  479 (1164)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333333333333333344433333333333333333333333

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=94.25  E-value=0.82  Score=50.80  Aligned_cols=96  Identities=24%  Similarity=0.299  Sum_probs=72.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHh
Q 008304          465 LEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRL  544 (570)
Q Consensus       465 LqQhIeDLT~EKfaLqRaLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LEs~~~ErdaArl  544 (570)
                      ||..|+++-+||-.|+.....-.+-+++|-.+++.|       ...+...++++++|+++.+.-....+.++.|++-...
T Consensus       141 lQ~qlE~~qkE~eeL~~~~~~Le~e~~~l~~~v~~l-------~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L~~  213 (546)
T PF07888_consen  141 LQNQLEECQKEKEELLKENEQLEEEVEQLREEVERL-------EAELEQEEEEMEQLKQQQKELTESSEELKEERESLKE  213 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            788999988999988877766555555555555555       4455555666666666666666777888899998888


Q ss_pred             hhhhHHHHHHHHHHhhhhhhhhh
Q 008304          545 ECNAADERAKILASEVIGLEEKV  567 (570)
Q Consensus       545 e~~aA~ERak~LAaEVV~LEEk~  567 (570)
                      +...+..|.+.|-.++..|..+.
T Consensus       214 q~~e~~~ri~~LEedi~~l~qk~  236 (546)
T PF07888_consen  214 QLAEARQRIRELEEDIKTLTQKE  236 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            88888999999988888887765

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=94.24  E-value=1.3  Score=43.50  Aligned_cols=101  Identities=24%  Similarity=0.263  Sum_probs=79.7

Q ss_pred             HHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008304          463 AALEQHIEDLTQE--------KFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELES  534 (570)
Q Consensus       463 AaLqQhIeDLT~E--------KfaLqRaLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LEs  534 (570)
                      ..|+..|..+...        +-.|.+.|...+...+.++.|+..|.-..+.....+..++..++.....+..-..++..
T Consensus        28 ~~Le~~i~~~~~~~~~~~~~~~~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~  107 (312)
T PF00038_consen   28 KRLESEIEELREKKGEEVSRIKEMYEEELRELRRQIDDLSKEKARLELEIDNLKEELEDLRRKYEEELAERKDLEEELES  107 (312)
T ss_dssp             HHHHHHHHH---------HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHhcccccCcccccchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            4566677766655        55688888999999999999999998888888888888888888888888888888888


Q ss_pred             hHHHHHHHHhhhhhHHHHHHHHHHhhhhh
Q 008304          535 FRNEYANVRLECNAADERAKILASEVIGL  563 (570)
Q Consensus       535 ~~~ErdaArle~~aA~ERak~LAaEVV~L  563 (570)
                      ++.+.+.+-+...+...+.+.|--|+--|
T Consensus       108 lrk~ld~~~~~r~~le~~i~~L~eEl~fl  136 (312)
T PF00038_consen  108 LRKDLDEETLARVDLENQIQSLKEELEFL  136 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhhhhhhHhHHHHHHHHHHHHHHHH
Confidence            88888888888888888888777765443

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=93.98  E-value=1.6  Score=42.69  Aligned_cols=62  Identities=19%  Similarity=0.255  Sum_probs=51.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 008304          463 AALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEE  524 (570)
Q Consensus       463 AaLqQhIeDLT~EKfaLqRaLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~E  524 (570)
                      +..|+-|+++..||-.|++.+.+-.+=.+.|-..|..+.+....|...+.+|+.+++.++..
T Consensus        38 ~~sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~   99 (251)
T PF11932_consen   38 QQSQKRIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEET   99 (251)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45778888888888888888888888888888888888888888888888888887777643

However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.

>PRK09039 hypothetical protein; Validated

Probab=93.85  E-value=1.1  Score=46.34  Aligned_cols=58  Identities=10%  Similarity=0.163  Sum_probs=36.3

Q ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhHHHHHHHHHH
Q 008304          501 TDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILAS  558 (570)
Q Consensus       501 TdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LEs~~~ErdaArle~~aA~ERak~LAa  558 (570)
                      .+.+.++.....+...++.+|++||++-...|.++.++.++++..-.++.++-..|-.
T Consensus       122 ~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~  179 (343)
T PRK09039        122 AQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGR  179 (343)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455555556666666666777776666666777777777776666666665544433

>PRK11637 AmiB activator; Provisional

Probab=93.78  E-value=1.7  Score=45.31  Aligned_cols=85  Identities=21%  Similarity=0.300  Sum_probs=62.9

Q ss_pred             ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 008304          456 TKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESF  535 (570)
Q Consensus       456 ~~~~ddFAaLqQhIeDLT~EKfaLqRaLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LEs~  535 (570)
                      ....+-+..|++..++|..+|-.|...++...++-..+..+-..|...-.++...+.+|+.++..++.+++......+.+
T Consensus       166 ~~d~~~l~~l~~~~~~L~~~k~~le~~~~~l~~~~~e~~~~k~~L~~~k~e~~~~l~~L~~~~~~~~~~l~~l~~~~~~L  245 (428)
T PRK11637        166 QARQETIAELKQTREELAAQKAELEEKQSQQKTLLYEQQAQQQKLEQARNERKKTLTGLESSLQKDQQQLSELRANESRL  245 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33455566677777788888888888888888888888888888888888888888888877776666665555555555


Q ss_pred             HHHHH
Q 008304          536 RNEYA  540 (570)
Q Consensus       536 ~~Erd  540 (570)
                      ..+.+
T Consensus       246 ~~~I~  250 (428)
T PRK11637        246 RDSIA  250 (428)
T ss_pred             HHHHH
Confidence            44443

>PRK02224 chromosome segregation protein; Provisional

Probab=93.72  E-value=1.5  Score=48.95  Aligned_cols=107  Identities=21%  Similarity=0.302  Sum_probs=59.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 008304          461 DFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYA  540 (570)
Q Consensus       461 dFAaLqQhIeDLT~EKfaLqRaLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LEs~~~Erd  540 (570)
                      +.+.|+..|+++.+++-.|...++.++++. .|...-+.+.+..+.....+....+..+.|++++......++....+++
T Consensus       483 ~~~~le~~l~~~~~~~e~l~~~~~~~~~l~-~l~~~~~~l~~~~~~~~e~le~~~~~~~~l~~e~~~l~~~~~~~~~~~~  561 (880)
T PRK02224        483 ELEDLEEEVEEVEERLERAEDLVEAEDRIE-RLEERREDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAA  561 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455566666666665554444444433333 3434444444445555555555555566666666655556655556666


Q ss_pred             HHHhhhhhHHHHHHHHHHhhhhhhhhhh
Q 008304          541 NVRLECNAADERAKILASEVIGLEEKVR  568 (570)
Q Consensus       541 aArle~~aA~ERak~LAaEVV~LEEk~l  568 (570)
                      .++.+...+.++...+..++-.||.+..
T Consensus       562 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~  589 (880)
T PRK02224        562 EAEEEAEEAREEVAELNSKLAELKERIE  589 (880)
T ss_pred             HHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            6666666666666666666666655543

>PRK11637 AmiB activator; Provisional

Probab=93.68  E-value=1  Score=47.01  Aligned_cols=82  Identities=12%  Similarity=0.133  Sum_probs=63.6

Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 008304          458 HNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRN  537 (570)
Q Consensus       458 ~~ddFAaLqQhIeDLT~EKfaLqRaLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LEs~~~  537 (570)
                      ..++...|++-|+++-++.-.+++.+.....-.+.|..+-..+..++|+....+.+++.++++++.+|......++..+.
T Consensus        45 ~~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~  124 (428)
T PRK11637         45 NRDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQER  124 (428)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46677778888888877777777777777777777777788888888888888888888888888888777777776664


Q ss_pred             HH
Q 008304          538 EY  539 (570)
Q Consensus       538 Er  539 (570)
                      ++
T Consensus       125 ~l  126 (428)
T PRK11637        125 LL  126 (428)
T ss_pred             HH
Confidence            44

>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []

Probab=93.44  E-value=4.5  Score=46.43  Aligned_cols=67  Identities=18%  Similarity=0.245  Sum_probs=57.6

Q ss_pred             ccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHH
Q 008304          450 QHGFYSTKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKS  516 (570)
Q Consensus       450 ~~~F~s~~~~ddFAaLqQhIeDLT~EKfaLqRaLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk~  516 (570)
                      .-|.+|--+-.++..|+|-+.-+-.||-+|...|+.+|.-.+.--.+-+..+++.|..+..|++|+.
T Consensus       255 v~DLfSEl~~~EiqKL~qQL~qve~EK~~L~~~L~e~Q~qLe~a~~als~q~eki~~L~e~l~aL~~  321 (717)
T PF09730_consen  255 VSDLFSELNLSEIQKLKQQLLQVEREKSSLLSNLQESQKQLEHAQGALSEQQEKINRLTEQLDALRK  321 (717)
T ss_pred             cchhhhhcchHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            3466777778899999999999999999999999999988888788888888888888888888877

Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus

>PRK10884 SH3 domain-containing protein; Provisional

Probab=93.29  E-value=0.99  Score=44.22  Aligned_cols=79  Identities=18%  Similarity=0.288  Sum_probs=51.7

Q ss_pred             cccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008304          455 STKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELES  534 (570)
Q Consensus       455 s~~~~ddFAaLqQhIeDLT~EKfaLqRaLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LEs  534 (570)
                      .+.-.+...+||+-|++|+.+--.+.          +++..+...+.+++++....+++|+.+-++|++|++....+++.
T Consensus        88 ~p~~~~rlp~le~el~~l~~~l~~~~----------~~~~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~  157 (206)
T PRK10884         88 TPSLRTRVPDLENQVKTLTDKLNNID----------NTWNQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDA  157 (206)
T ss_pred             CccHHHHHHHHHHHHHHHHHHHHHHH----------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45667889999999999885433322          33445555566666666667777777777777776666666666


Q ss_pred             hHHHHHHHH
Q 008304          535 FRNEYANVR  543 (570)
Q Consensus       535 ~~~ErdaAr  543 (570)
                      +.+|.+..+
T Consensus       158 l~~~~~~~~  166 (206)
T PRK10884        158 ANLQLDDKQ  166 (206)
T ss_pred             HHHHHHHHH
Confidence            655555443

>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89

Probab=92.93  E-value=0.66  Score=38.76  Aligned_cols=61  Identities=18%  Similarity=0.250  Sum_probs=55.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhHHHHHHHHHHhhhhhhhhh
Q 008304          507 QRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKV  567 (570)
Q Consensus       507 Q~~~v~qLk~dmErLq~Ei~aQl~~LEs~~~ErdaArle~~aA~ERak~LAaEVV~LEEk~  567 (570)
                      ....+..|+..+.++.+.+.++..++..+..|||.|......|-++..-|-+||-.|....
T Consensus         3 Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el   63 (69)
T PF14197_consen    3 LEAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKEL   63 (69)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3467889999999999999999999999999999999999999999999999998887653

>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold)

Probab=92.90  E-value=3.6  Score=37.68  Aligned_cols=89  Identities=18%  Similarity=0.258  Sum_probs=67.8

Q ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH-HHHhhhh
Q 008304          457 KHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQ-LVELESF  535 (570)
Q Consensus       457 ~~~ddFAaLqQhIeDLT~EKfaLqRaLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQ-l~~LEs~  535 (570)
                      ......+.||.+||+.....-.|...=+.=+....+|-++|.+++.+-|.....|.++...|+-..   .+. .+...-.
T Consensus        13 el~n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le~eK---~ak~~l~~r~~   89 (107)
T PF09304_consen   13 ELQNRLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNLEDEK---QAKLELESRLL   89 (107)
T ss_dssp             -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Confidence            346789999999999988888887776777788899999999999999999999988888777522   222 3333445


Q ss_pred             HHHHHHHHhhhhh
Q 008304          536 RNEYANVRLECNA  548 (570)
Q Consensus       536 ~~ErdaArle~~a  548 (570)
                      ++|.|.|.++.--
T Consensus        90 k~~~dka~lel~l  102 (107)
T PF09304_consen   90 KAQKDKAILELKL  102 (107)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHhhhhHHHHHH
Confidence            6888888776543

The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=92.26  E-value=2.8  Score=49.36  Aligned_cols=106  Identities=24%  Similarity=0.375  Sum_probs=49.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 008304          461 DFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYA  540 (570)
Q Consensus       461 dFAaLqQhIeDLT~EKfaLqRaLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LEs~~~Erd  540 (570)
                      +++.|..++.++..+...|.+.++...+-.+.|....+.+..+--+....+..++.+++.+..+|......++.++.++.
T Consensus       384 ~~~~~~~~~~~~~~~l~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  463 (1163)
T COG1196         384 ELAELEAELAEIRNELEELKREIESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEELEELEEQLEELRDRLK  463 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444444444555555544444444444444444444444444444444445555555555555555554444


Q ss_pred             HHHhhhhhHHHHHHHHHHhhhhhhhh
Q 008304          541 NVRLECNAADERAKILASEVIGLEEK  566 (570)
Q Consensus       541 aArle~~aA~ERak~LAaEVV~LEEk  566 (570)
                      .+..+...+.+.-+.+-.++-.++.+
T Consensus       464 ~~~~~~~~~~~~~~~~~~~l~~~~~~  489 (1163)
T COG1196         464 ELERELAELQEELQRLEKELSSLEAR  489 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444444444444444444444433

>PHA02562 46 endonuclease subunit; Provisional

Probab=92.07  E-value=3.2  Score=43.66  Aligned_cols=53  Identities=6%  Similarity=0.206  Sum_probs=31.5

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhhhHHHHHHHHhHHHH
Q 008304          459 NEDFAALEQHIEDLTQEKFALQRSLEASRALS---ESLAAENSSLTDSYNQQRSVV  511 (570)
Q Consensus       459 ~ddFAaLqQhIeDLT~EKfaLqRaLeks~~la---EsLA~ENsALTdryNqQ~~~v  511 (570)
                      ...+..|+.-|++|..+.-.|...+....+..   +.+..+-..+.+..+.....+
T Consensus       298 ~~~~~~l~d~i~~l~~~l~~l~~~i~~~~~~~~~~~~~~~~i~el~~~i~~~~~~i  353 (562)
T PHA02562        298 PDRITKIKDKLKELQHSLEKLDTAIDELEEIMDEFNEQSKKLLELKNKISTNKQSL  353 (562)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            57788888888888888888877777333333   333333334444444444443

>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family

Probab=91.97  E-value=6.5  Score=39.28  Aligned_cols=21  Identities=14%  Similarity=0.161  Sum_probs=8.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q 008304          467 QHIEDLTQEKFALQRSLEASR  487 (570)
Q Consensus       467 QhIeDLT~EKfaLqRaLeks~  487 (570)
                      ..++.+..+.-.+...++..+
T Consensus       144 ~~~~~l~~~i~~~~~~i~~~~  164 (423)
T TIGR01843       144 AQLELILAQIKQLEAELAGLQ  164 (423)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            333344444433333333333

Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.

>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions []

Probab=91.83  E-value=2  Score=37.22  Aligned_cols=74  Identities=24%  Similarity=0.291  Sum_probs=62.9

Q ss_pred             ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008304          456 TKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELE  533 (570)
Q Consensus       456 ~~~~ddFAaLqQhIeDLT~EKfaLqRaLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LE  533 (570)
                      .++-.++..|||.|--|+.||-.--.---.+++-.+.|-.|+-.|....+.+...+.+|++    ++.++..++..+|
T Consensus        20 ~~k~~~~~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L~~~~~Ks~~~i~~L~~----~E~~~~~~l~~~E   93 (96)
T PF08647_consen   20 DKKVKELTILEQKKLRLEAEKAKADQKYFAAMRSKDALDNEMKKLNTQLSKSSELIEQLKE----TEKEFVRKLKNLE   93 (96)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHH----HHHHHHHHHHHhh
Confidence            3456789999999999999998888888888888999999999999999999999999988    6667666666554

>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=91.82  E-value=1.8  Score=44.45  Aligned_cols=28  Identities=39%  Similarity=0.518  Sum_probs=11.3

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008304          460 EDFAALEQHIEDLTQEKFALQRSLEASR  487 (570)
Q Consensus       460 ddFAaLqQhIeDLT~EKfaLqRaLeks~  487 (570)
                      .+.+.+++-|++|.+|.-.|...|....
T Consensus        43 ~~~~~~~~el~~le~Ee~~l~~eL~~LE   70 (314)
T PF04111_consen   43 EDIEELEEELEKLEQEEEELLQELEELE   70 (314)
T ss_dssp             H--HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444444444444444443333

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.

>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []

Probab=91.45  E-value=0.86  Score=41.58  Aligned_cols=62  Identities=26%  Similarity=0.340  Sum_probs=47.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhHHHHH---HHHHHhhhhhhhhhh
Q 008304          507 QRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERA---KILASEVIGLEEKVR  568 (570)
Q Consensus       507 Q~~~v~qLk~dmErLq~Ei~aQl~~LEs~~~ErdaArle~~aA~ERa---k~LAaEVV~LEEk~l  568 (570)
                      ....|+.|+..+.+++.|+..-...++.+..+|+.++.|.....++.   +..+.++-.|+.++-
T Consensus        14 ~~~~ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~   78 (120)
T PF12325_consen   14 SVQLVERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELE   78 (120)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45678888888888888888888888888888888888887777666   566666666666654

The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].

>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues

Probab=90.83  E-value=8.3  Score=40.51  Aligned_cols=113  Identities=17%  Similarity=0.249  Sum_probs=67.4

Q ss_pred             cccchhhHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHhhhH---HHHHHHHhHHHHHHHHH
Q 008304          455 STKHNEDFAALEQHIEDLTQEKFALQRSLEASR---------------ALSESLAAENSS---LTDSYNQQRSVVNQLKS  516 (570)
Q Consensus       455 s~~~~ddFAaLqQhIeDLT~EKfaLqRaLeks~---------------~laEsLA~ENsA---LTdryNqQ~~~v~qLk~  516 (570)
                      ...+...+.+||+-|.+|-+|-..|--...+-.               +.+++|+.-|..   |++--..........++
T Consensus       155 ~~~~~~~le~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~EekEqqLv~dcv~QL~~An~qia~LseELa~k~Ee~~rQQE  234 (306)
T PF04849_consen  155 SSQKCIQLEALQEKLKSLEEENEQLRSEASQLKTETDTYEEKEQQLVLDCVKQLSEANQQIASLSEELARKTEENRRQQE  234 (306)
T ss_pred             ccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHH
Confidence            344567789999999999988877765444333               122333333322   11111122222222233


Q ss_pred             HHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhHHHHHHHHHHhhhhhhhhh
Q 008304          517 EMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKV  567 (570)
Q Consensus       517 dmErLq~Ei~aQl~~LEs~~~ErdaArle~~aA~ERak~LAaEVV~LEEk~  567 (570)
                      ++.+|..+|.--...+..+..|-...++-..++.+.=..|++|+..|.+|-
T Consensus       235 EIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY  285 (306)
T PF04849_consen  235 EITSLLSQIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDKY  285 (306)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333334344444555667777788888888999999999999999985

HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

Probab=90.83  E-value=5.5  Score=40.40  Aligned_cols=99  Identities=23%  Similarity=0.312  Sum_probs=58.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHH-------HHHHHHhhhhH--HHHH
Q 008304          470 EDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEI-------KVQLVELESFR--NEYA  540 (570)
Q Consensus       470 eDLT~EKfaLqRaLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei-------~aQl~~LEs~~--~Erd  540 (570)
                      ..|..|++.|.+-..-.++..+.+-.|-+++-+++=..--.+..|+.++-+++.+|       +.-...+.+++  -||.
T Consensus        13 q~lD~e~~rl~~~~~~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~~~e~~   92 (239)
T COG1579          13 QKLDLEKDRLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKDERELR   92 (239)
T ss_pred             HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHH
Confidence            34445555555544444444444445555555555444444444444444444444       33334444444  6778


Q ss_pred             HHHhhhhhHHHHHHHHHHhhhhhhhhhh
Q 008304          541 NVRLECNAADERAKILASEVIGLEEKVR  568 (570)
Q Consensus       541 aArle~~aA~ERak~LAaEVV~LEEk~l  568 (570)
                      +...+...|.+|...|-.|+..|.++.-
T Consensus        93 aL~~E~~~ak~r~~~le~el~~l~~~~~  120 (239)
T COG1579          93 ALNIEIQIAKERINSLEDELAELMEEIE  120 (239)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8888888899998888888888877653

>PRK09039 hypothetical protein; Validated

Probab=90.83  E-value=5  Score=41.70  Aligned_cols=61  Identities=15%  Similarity=0.153  Sum_probs=37.7

Q ss_pred             HHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhHHHH
Q 008304          492 SLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADER  552 (570)
Q Consensus       492 sLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LEs~~~ErdaArle~~aA~ER  552 (570)
                      .|.++-..+...|.+..-.|..|+.+|+.|+.++..-..+|+........++.....-..+
T Consensus       120 ~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~  180 (343)
T PRK09039        120 ELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRR  180 (343)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444555556667777777777777777777777766666666665555554444444333

>PHA02562 46 endonuclease subunit; Provisional

Probab=90.82  E-value=4  Score=42.94  Aligned_cols=105  Identities=12%  Similarity=0.199  Sum_probs=55.6

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008304          459 NEDFAALEQHIEDLTQEKFALQRSLEASRALSE----SLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELES  534 (570)
Q Consensus       459 ~ddFAaLqQhIeDLT~EKfaLqRaLeks~~laE----sLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LEs  534 (570)
                      .+.+..+++.|+.|..+.-.++..++..++..+    .+......+...++.......+|+.++++|+.+|..-...++.
T Consensus       173 k~~~~e~~~~i~~l~~~i~~l~~~i~~~~~~i~~~~~~~~~~i~~l~~e~~~l~~~~~~l~~~l~~l~~~i~~l~~~i~~  252 (562)
T PHA02562        173 KDKIRELNQQIQTLDMKIDHIQQQIKTYNKNIEEQRKKNGENIARKQNKYDELVEEAKTIKAEIEELTDELLNLVMDIED  252 (562)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence            344556666666666666665555553333222    2334455556666666666666666666666666555444444


Q ss_pred             hHHHHHHHHhhhhhHHHHHHHHHHhhhhh
Q 008304          535 FRNEYANVRLECNAADERAKILASEVIGL  563 (570)
Q Consensus       535 ~~~ErdaArle~~aA~ERak~LAaEVV~L  563 (570)
                      +......++.+...+...-..+..+..-+
T Consensus       253 ~~~~L~~l~~~~~~~~~~l~~~~~~~~~~  281 (562)
T PHA02562        253 PSAALNKLNTAAAKIKSKIEQFQKVIKMY  281 (562)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            44444444444444444444444444444

>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []

Probab=90.62  E-value=6.7  Score=39.10  Aligned_cols=56  Identities=23%  Similarity=0.284  Sum_probs=19.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhHHHHHHHHHHhhhhhhhh
Q 008304          511 VNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEK  566 (570)
Q Consensus       511 v~qLk~dmErLq~Ei~aQl~~LEs~~~ErdaArle~~aA~ERak~LAaEVV~LEEk  566 (570)
                      ..++...+++|+.+...+..+-+.+..+++.+......-.+-.+.-..|+..|.++
T Consensus        56 ~~eaee~~~rL~~~~~~~~eEk~~Le~e~~e~~~~i~~l~ee~~~ke~Ea~~lq~e  111 (246)
T PF00769_consen   56 RQEAEEEKQRLEEEAEMQEEEKEQLEQELREAEAEIARLEEESERKEEEAEELQEE  111 (246)
T ss_dssp             HHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444444444444444444444444444444444444444444444433

Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.

>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion

Probab=90.52  E-value=14  Score=34.12  Aligned_cols=70  Identities=19%  Similarity=0.308  Sum_probs=32.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 008304          460 EDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQL  529 (570)
Q Consensus       460 ddFAaLqQhIeDLT~EKfaLqRaLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl  529 (570)
                      .++..+++++..|.+|-..+++-+.....-.+.+-.+...+......-...+..+++..+.+..|++.-.
T Consensus        81 ~e~~~~~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~  150 (191)
T PF04156_consen   81 GELSELQQQLQQLQEELDQLQERIQELESELEKLKEDLQELRELLKSVEERLDSLDESIKELEKEIRELQ  150 (191)
T ss_pred             hhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3556666666666655555555544444444444444444443333334444444444444444433333

The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].

>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=90.47  E-value=3.2  Score=42.62  Aligned_cols=76  Identities=22%  Similarity=0.320  Sum_probs=56.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 008304          461 DFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFR  536 (570)
Q Consensus       461 dFAaLqQhIeDLT~EKfaLqRaLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LEs~~  536 (570)
                      +=..|.+.+++|-.|+..|.+.+...++-.+.|-.+-...-+.||.....+.+++++.+.+..+++.-...|+.++
T Consensus        58 Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~~L~  133 (314)
T PF04111_consen   58 EEEELLQELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYASNQLDRLR  133 (314)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455667777778888888888888777777787777788888888888888888887777777666665555544

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.

>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking

Probab=90.23  E-value=14  Score=35.41  Aligned_cols=73  Identities=16%  Similarity=0.260  Sum_probs=31.0

Q ss_pred             hHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008304          461 DFAALEQHIEDLTQEKF-ALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELE  533 (570)
Q Consensus       461 dFAaLqQhIeDLT~EKf-aLqRaLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LE  533 (570)
                      +-+.|++.|+++-+... .-.......+.-.+.+...+..|..+..++...+.+++..++.++++++.....|+
T Consensus        35 ~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l~  108 (302)
T PF10186_consen   35 ENEELRRRIEEILESDSNGQLLEIQQLKREIEELRERLERLRERIERLRKRIEQKRERLEELRESLEQRRSRLS  108 (302)
T ss_pred             HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34556666666544100 01112222222333334444444444444444445444444444444444444433

In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=90.08  E-value=6.5  Score=46.39  Aligned_cols=28  Identities=25%  Similarity=0.322  Sum_probs=12.2

Q ss_pred             HHHHHHHhhhhhHHHHHHHHHHhhhhhh
Q 008304          537 NEYANVRLECNAADERAKILASEVIGLE  564 (570)
Q Consensus       537 ~ErdaArle~~aA~ERak~LAaEVV~LE  564 (570)
                      .+...++.+....+++.+.+..++..++
T Consensus       877 ~~l~~~~~~~~~l~~~l~~~~~~~~~~~  904 (1163)
T COG1196         877 DELKELEEEKEELEEELRELESELAELK  904 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333444444444444444444444444

>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function

Probab=89.99  E-value=4  Score=42.87  Aligned_cols=87  Identities=17%  Similarity=0.275  Sum_probs=62.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhH-------------------HHHHHHHHHHHHH
Q 008304          461 DFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQR-------------------SVVNQLKSEMEKL  521 (570)
Q Consensus       461 dFAaLqQhIeDLT~EKfaLqRaLeks~~laEsLA~ENsALTdryNqQ~-------------------~~v~qLk~dmErL  521 (570)
                      ++..|.|.+.|..++.-.|+..+..-+.--..|-.++-.|-.+.+.+.                   ..+..++.+.++|
T Consensus        66 ~~~~La~lL~~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~~~~~~~ere~lV~qLEk~~~q~~qL  145 (319)
T PF09789_consen   66 ENKNLAQLLSESREQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQRVGDEGIGARHFPHEREDLVEQLEKLREQIEQL  145 (319)
T ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhhhhccccccccchHHHHHHHHHHHHHHHHHHH
Confidence            556666666666666666666666555555555555555555555433                   3457788899999


Q ss_pred             HHHHHHHHHHhhhhHHHHHHHHhhhh
Q 008304          522 QEEIKVQLVELESFRNEYANVRLECN  547 (570)
Q Consensus       522 q~Ei~aQl~~LEs~~~ErdaArle~~  547 (570)
                      +.++++.+-+.+-+..|||+++--|.
T Consensus       146 e~d~qs~lDEkeEl~~ERD~yk~K~~  171 (319)
T PF09789_consen  146 ERDLQSLLDEKEELVTERDAYKCKAH  171 (319)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999986654

>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89

Probab=89.91  E-value=4.7  Score=33.78  Aligned_cols=65  Identities=25%  Similarity=0.233  Sum_probs=44.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 008304          465 LEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQL  529 (570)
Q Consensus       465 LqQhIeDLT~EKfaLqRaLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl  529 (570)
                      |++.|.-|-..=..+.|-++........|..|++....+-=.-...+..|+.+++.|+.|++.++
T Consensus         3 Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~~r   67 (69)
T PF14197_consen    3 LEAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEELR   67 (69)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            44444444222234556677777888888888888887777777788888888888888765443

>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal

Probab=89.48  E-value=2.9  Score=37.12  Aligned_cols=81  Identities=22%  Similarity=0.337  Sum_probs=53.1

Q ss_pred             chhhHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 008304          458 HNEDFAALEQHIEDLTQEKFA-----------LQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIK  526 (570)
Q Consensus       458 ~~ddFAaLqQhIeDLT~EKfa-----------LqRaLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~  526 (570)
                      +.-||++||.||..+|-=++.           +.+-+.=+|=..|=|-.-.+.|.+........+.++..++++|+..++
T Consensus        25 ~~~Di~~Lq~~i~~vtf~~l~~e~~~~~~dp~~~klfrLaQl~ieYLl~~q~~L~~~~~~l~~~~~~~~~~~~~l~~~~~  104 (118)
T PF13815_consen   25 RELDIDTLQENIENVTFCDLENEDCQHFVDPNFLKLFRLAQLSIEYLLHCQEYLSSQLEQLEERLQELQQEIEKLKQKLK  104 (118)
T ss_pred             hccCHHHHHHHHHhcceeccChhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            367999999999977643321           233444455556666666666666666666666677777777777776


Q ss_pred             HHHHHhhhhHHH
Q 008304          527 VQLVELESFRNE  538 (570)
Q Consensus       527 aQl~~LEs~~~E  538 (570)
                      .+..++..++.|
T Consensus       105 ~~~~~~k~lk~E  116 (118)
T PF13815_consen  105 KQKEEIKKLKKE  116 (118)
T ss_pred             HHHHHHHHHHHh
Confidence            666666666655

>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family

Probab=89.34  E-value=16  Score=36.54  Aligned_cols=27  Identities=30%  Similarity=0.362  Sum_probs=13.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008304          461 DFAALEQHIEDLTQEKFALQRSLEASR  487 (570)
Q Consensus       461 dFAaLqQhIeDLT~EKfaLqRaLeks~  487 (570)
                      +.+.|++-|+.+..+.-.++..++.++
T Consensus       145 ~~~~l~~~i~~~~~~i~~~~~~l~~~~  171 (423)
T TIGR01843       145 QLELILAQIKQLEAELAGLQAQLQALR  171 (423)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344555555555555544444444333

Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.

>PRK02224 chromosome segregation protein; Provisional

Probab=89.26  E-value=10  Score=42.55  Aligned_cols=104  Identities=17%  Similarity=0.165  Sum_probs=52.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 008304          462 FAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYAN  541 (570)
Q Consensus       462 FAaLqQhIeDLT~EKfaLqRaLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LEs~~~Erda  541 (570)
                      +..|...|+++..++-.|.+.++...+-.+.|-..... -.++.+....++++++.++.+..++......++.+..|...
T Consensus       470 ~~~~~~~~~~~~~~~~~le~~l~~~~~~~e~l~~~~~~-~~~l~~l~~~~~~l~~~~~~~~e~le~~~~~~~~l~~e~~~  548 (880)
T PRK02224        470 IEEDRERVEELEAELEDLEEEVEEVEERLERAEDLVEA-EDRIERLEERREDLEELIAERRETIEEKRERAEELRERAAE  548 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence            34567777777777777777777666655544443222 23333333344444444444444444444444455555555


Q ss_pred             HHhhhhhHHHHHHHHHHhhhhhhhh
Q 008304          542 VRLECNAADERAKILASEVIGLEEK  566 (570)
Q Consensus       542 Arle~~aA~ERak~LAaEVV~LEEk  566 (570)
                      .+.++..+..+++.+=.+.-.++++
T Consensus       549 l~~~~~~~~~~~~~~~~~~~~~~~~  573 (880)
T PRK02224        549 LEAEAEEKREAAAEAEEEAEEAREE  573 (880)
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHH
Confidence            5555544444444444444443333

>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function

Probab=89.07  E-value=8  Score=42.17  Aligned_cols=67  Identities=30%  Similarity=0.358  Sum_probs=59.9

Q ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhHHHHHHHHHHhhhhhhhhhhc
Q 008304          503 SYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKVRS  569 (570)
Q Consensus       503 ryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LEs~~~ErdaArle~~aA~ERak~LAaEVV~LEEk~lq  569 (570)
                      ........+.+.+..|+....|+..-...+++|+.|..+.+.+.....+|-....++|..|+.++.+
T Consensus       282 ~l~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~  348 (522)
T PF05701_consen  282 SLASAKKELEEAKKELEKAKEEASSLRASVESLRSELEKEKEELERLKEREKEASSEVSSLEAELNK  348 (522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHH
Confidence            3666777788888888888899999999999999999999999999999999999999999998754

Several sequences in this family are described as being myosin heavy chain-like.

>PRK10884 SH3 domain-containing protein; Provisional

Probab=89.06  E-value=3.7  Score=40.32  Aligned_cols=69  Identities=16%  Similarity=0.290  Sum_probs=45.5

Q ss_pred             hhhHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 008304          459 NEDFAALEQHIEDL----TQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKV  527 (570)
Q Consensus       459 ~ddFAaLqQhIeDL----T~EKfaLqRaLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~a  527 (570)
                      ..+++.|++-++++    .+++-.|+..++.+......|..||+.|....-.....+..|+.+++.++++++-
T Consensus        99 e~el~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~~~~  171 (206)
T PRK10884         99 ENQVKTLTDKLNNIDNTWNQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRTIIM  171 (206)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46666666555555    4556777777777777777788888877666666666666666666666555443

>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=89.05  E-value=5.6  Score=38.89  Aligned_cols=65  Identities=18%  Similarity=0.266  Sum_probs=55.1

Q ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 008304          479 LQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVR  543 (570)
Q Consensus       479 LqRaLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LEs~~~ErdaAr  543 (570)
                      ..+.=.++++..+.+++|-..|.++|-+...++..|+...++|+..+..|..+++.+..+.+...
T Consensus        33 ~~~~~~~sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~   97 (251)
T PF11932_consen   33 WVQAAQQSQKRIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIE   97 (251)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44455677888999999999999999999999999999999999999999999998886555443

However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.

>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]

Probab=89.02  E-value=2.4  Score=48.16  Aligned_cols=79  Identities=16%  Similarity=0.297  Sum_probs=64.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhHHHHH
Q 008304          475 EKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERA  553 (570)
Q Consensus       475 EKfaLqRaLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LEs~~~ErdaArle~~aA~ERa  553 (570)
                      +-|+..|.|..+.++-+++..|--.|--+--+..+.++++.-++|.|+++|.....+|++++.|..+||-...+++||-
T Consensus        73 ~~~s~~r~~~e~~RI~~sVs~EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~~~~El~~~n  151 (907)
T KOG2264|consen   73 SGYSIGRILREQKRILASVSLELTELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQRQLEELRETN  151 (907)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHhhc
Confidence            4566677777777777777777766766666677788888888999999998888999999999999999888888763

>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation

Probab=88.61  E-value=4.5  Score=34.18  Aligned_cols=47  Identities=23%  Similarity=0.234  Sum_probs=22.7

Q ss_pred             HHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 008304          485 ASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVE  531 (570)
Q Consensus       485 ks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~  531 (570)
                      ++-+..+.|-.||+.|-.+.++....-.+|+.+.++|++|..+...-
T Consensus        15 ~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~r   61 (72)
T PF06005_consen   15 QAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQER   61 (72)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344444444555555555554455555555555555444444333

It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.

>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants

Probab=88.55  E-value=9.6  Score=44.15  Aligned_cols=106  Identities=22%  Similarity=0.246  Sum_probs=66.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHh
Q 008304          465 LEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRL  544 (570)
Q Consensus       465 LqQhIeDLT~EKfaLqRaLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LEs~~~ErdaArl  544 (570)
                      +.+-+..++-|-.+|-++|+.--.+...|-.+....-..++.....+..+.++..-|+-|+.+..-+||--..||+--+.
T Consensus        97 ~~~~l~~~~~e~~~l~~~l~~~~~~i~~l~~~~~~~e~~~~~l~~~l~~~eken~~Lkye~~~~~keleir~~E~~~~~~  176 (769)
T PF05911_consen   97 LSKRLAESAAENSALSKALQEKEKLIAELSEEKSQAEAEIEDLMARLESTEKENSSLKYELHVLSKELEIRNEEREYSRR  176 (769)
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence            33334444445555555555555555555555555555666666666666666666777777777777777788887777


Q ss_pred             hhhhHHHHHHHHHHhhhhhhhhhhcC
Q 008304          545 ECNAADERAKILASEVIGLEEKVRSL  570 (570)
Q Consensus       545 e~~aA~ERak~LAaEVV~LEEk~lqL  570 (570)
                      .+.+|.-+=.-=.--|--||..|.||
T Consensus       177 ~ae~a~kqhle~vkkiakLEaEC~rL  202 (769)
T PF05911_consen  177 AAEAASKQHLESVKKIAKLEAECQRL  202 (769)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77777654443344455799999876

The function of this family is unknown.

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=88.48  E-value=14  Score=41.64  Aligned_cols=61  Identities=26%  Similarity=0.413  Sum_probs=36.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 008304          465 LEQHIEDLTQEKFALQRSLEASRALSE--------------SLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEI  525 (570)
Q Consensus       465 LqQhIeDLT~EKfaLqRaLeks~~laE--------------sLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei  525 (570)
                      |++-.+.|-++.-.|++.|..+++-++              .|..|++.|..++.++...+.+|..++..|.+..
T Consensus       162 Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L~~q~~e~~~ri~~LEedi~~l~qk~  236 (546)
T PF07888_consen  162 LEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKELTESSEELKEERESLKEQLAEARQRIRELEEDIKTLTQKE  236 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333444444444556666665555544              4455666677777777777777777776665554

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway

Probab=88.38  E-value=12  Score=30.39  Aligned_cols=89  Identities=24%  Similarity=0.290  Sum_probs=44.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 008304          461 DFAALEQHIEDLTQEKFALQRSLEASR-----ALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESF  535 (570)
Q Consensus       461 dFAaLqQhIeDLT~EKfaLqRaLeks~-----~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LEs~  535 (570)
                      .+...++.|+.|..++-.++..+....     ........--..|...-.++...+..++.+++.+++++......++.+
T Consensus        13 ~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~r~~l~~a~~~~k~~   92 (123)
T PF02050_consen   13 ELQEAEEQLEQLQQERQEYQEQLSESQQGVSVAQLRNYQRYISALEQAIQQQQQELERLEQEVEQAREELQEARRERKKL   92 (123)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHT-----SGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444555556666666665555554444     344444444455555555555555556666666665555555555555


Q ss_pred             HHHHHHHHhhhhhH
Q 008304          536 RNEYANVRLECNAA  549 (570)
Q Consensus       536 ~~ErdaArle~~aA  549 (570)
                      .-=+++.+.....+
T Consensus        93 e~L~e~~~~~~~~~  106 (123)
T PF02050_consen   93 EKLKERRREEYQQE  106 (123)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            54444444433333

Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.

>PRK04863 mukB cell division protein MukB; Provisional

Probab=88.21  E-value=11  Score=46.38  Aligned_cols=73  Identities=18%  Similarity=0.260  Sum_probs=53.3

Q ss_pred             HHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhHHHHHHHHHHhhhhhh
Q 008304          492 SLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLE  564 (570)
Q Consensus       492 sLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LEs~~~ErdaArle~~aA~ERak~LAaEVV~LE  564 (570)
                      .+..+-+.|..+..++...+.+++.+++.++.++.....+++.++.++...+.+...+..+...+-..+..||
T Consensus       352 ~l~~~LeELee~Lee~eeeLeeleeeleeleeEleelEeeLeeLqeqLaelqqel~elQ~el~q~qq~i~~Le  424 (1486)
T PRK04863        352 RYQADLEELEERLEEQNEVVEEADEQQEENEARAEAAEEEVDELKSQLADYQQALDVQQTRAIQYQQAVQALE  424 (1486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445556677777777788888888888888877777777777777777777777777777776666665554

>TIGR00606 rad50 rad50

Probab=88.12  E-value=7.7  Score=46.31  Aligned_cols=60  Identities=8%  Similarity=0.227  Sum_probs=33.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhHHHHHHHHHHhhhhhhhhhhc
Q 008304          508 RSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKVRS  569 (570)
Q Consensus       508 ~~~v~qLk~dmErLq~Ei~aQl~~LEs~~~ErdaArle~~aA~ERak~LAaEVV~LEEk~lq  569 (570)
                      ...+.+++.+++.|..++..  +....+..|+...+.++++..-..-.+.-++=.||+++.+
T Consensus      1027 ~~~l~el~~eI~~l~~~~~~--~~~~~~~~e~~~l~~~~~~l~~~~a~l~g~~k~le~qi~~ 1086 (1311)
T TIGR00606      1027 ENELKEVEEELKQHLKEMGQ--MQVLQMKQEHQKLEENIDLIKRNHVLALGRQKGYEKEIKH 1086 (1311)
T ss_pred             HHHHHHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444444444444444332  1335566666666666666666555666666666666654

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG4005 consensus Transcription factor XBP-1 [Transcription]

Probab=88.01  E-value=5.1  Score=41.44  Aligned_cols=95  Identities=26%  Similarity=0.306  Sum_probs=66.2

Q ss_pred             ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 008304          456 TKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESF  535 (570)
Q Consensus       456 ~~~~ddFAaLqQhIeDLT~EKfaLqRaLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LEs~  535 (570)
                      ..|.+..+-||+.|.|||+|---|+-.-+.-|++++.|-.+|-+|       ...++.|..++..|.+.-+-+-+..|.-
T Consensus        86 DrKKaRm~eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el-------~~~le~~~~~l~~~~~~~~~~~~v~eee  158 (292)
T KOG4005|consen   86 DRKKARMEEMEYEIKDLTEENEILQNENDSLRAINESLLAKNHEL-------DSELELLRQELAELKQQQQHNTRVIEEE  158 (292)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH-------HHHHHHHHHHHHhhHHHHHHhhHHHhhh
Confidence            356778899999999999999999888888888888887777655       4556667777766665544443333221


Q ss_pred             ---------------HHHHHHHHhhhhhHHHHHHHHH
Q 008304          536 ---------------RNEYANVRLECNAADERAKILA  557 (570)
Q Consensus       536 ---------------~~ErdaArle~~aA~ERak~LA  557 (570)
                                     +++-.+|...+..-.|.|+.+-
T Consensus       159 ~~~~gaev~~v~G~~~a~saaa~~~ap~Qqeqa~~~~  195 (292)
T KOG4005|consen  159 NASAGAEVWYVTGGHTAVSAAAGGAAPEQQEQALTLE  195 (292)
T ss_pred             hhccCCceEEecCCchhHhHhhcccChhhHhhhhccc
Confidence                           2556667777777777766553

>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]

Probab=87.64  E-value=10  Score=47.82  Aligned_cols=84  Identities=21%  Similarity=0.312  Sum_probs=44.3

Q ss_pred             HHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhh-------hHHHHHHHHhhhhhHHHHHHHH
Q 008304          484 EASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELES-------FRNEYANVRLECNAADERAKIL  556 (570)
Q Consensus       484 eks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LEs-------~~~ErdaArle~~aA~ERak~L  556 (570)
                      +.+.++-+.|..+...|-..+..-...+.++++....|+.+.+...-++..       +...|+.++++.+++..+-+-|
T Consensus       890 ~~aee~~~~~~~~k~~le~~l~~~~~~~e~~ee~~~~le~~~~~~~~e~~~l~~~~~~~E~~~~k~~~Ek~~~e~~~~~l  969 (1930)
T KOG0161|consen  890 AEAEELLERLRAEKQELEKELKELKERLEEEEEKNAELERKKRKLEQEVQELKEQLEELELTLQKLELEKNAAENKLKNL  969 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334445555555555555555555555555555444444333333333322       3344446666666666666666


Q ss_pred             HHhhhhhhhhh
Q 008304          557 ASEVIGLEEKV  567 (570)
Q Consensus       557 AaEVV~LEEk~  567 (570)
                      =-|+.+|||++
T Consensus       970 ~~e~~~~~e~~  980 (1930)
T KOG0161|consen  970 EEEINSLDENI  980 (1930)
T ss_pred             HHHHHHHHHHH
Confidence            66666666554

>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=87.55  E-value=5.3  Score=37.92  Aligned_cols=89  Identities=20%  Similarity=0.256  Sum_probs=55.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHh
Q 008304          465 LEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRL  544 (570)
Q Consensus       465 LqQhIeDLT~EKfaLqRaLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LEs~~~ErdaArl  544 (570)
                      |+|-|-++|.+--.|...+.........|..++..|..+..+....|.++...++.|+.|+.+-.+.+..+.......+.
T Consensus        93 l~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~  172 (194)
T PF08614_consen   93 LAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEE  172 (194)
T ss_dssp             ---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56777778887777888888888888888888888888888888888888888888888888888888877777777777


Q ss_pred             hhhhHHHHH
Q 008304          545 ECNAADERA  553 (570)
Q Consensus       545 e~~aA~ERa  553 (570)
                      |-..=-+|=
T Consensus       173 En~~Lv~Rw  181 (194)
T PF08614_consen  173 ENRELVERW  181 (194)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            766666653

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.

>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]

Probab=87.30  E-value=13  Score=44.68  Aligned_cols=70  Identities=24%  Similarity=0.319  Sum_probs=55.7

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhH--------------HHHHHHHhhhhhHHHHHHHHHHhhhhhh
Q 008304          499 SLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFR--------------NEYANVRLECNAADERAKILASEVIGLE  564 (570)
Q Consensus       499 ALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LEs~~--------------~ErdaArle~~aA~ERak~LAaEVV~LE  564 (570)
                      ...+.||.|...+.-.++.+..|++.+.-+...++.++              .|.++---+|..|.++.+.+..||..||
T Consensus       278 ~~~~ql~~~~~~i~~~qek~~~l~~ki~~~~~k~~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re~~~~~  357 (1074)
T KOG0250|consen  278 EVERQLNNQEEEIKKKQEKVDTLQEKIEEKQGKIEEARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRREVNDLK  357 (1074)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            45788999998888888888888887777766666555              5666666788899999999999999999


Q ss_pred             hhhh
Q 008304          565 EKVR  568 (570)
Q Consensus       565 Ek~l  568 (570)
                      +++.
T Consensus       358 ~~~~  361 (1074)
T KOG0250|consen  358 EEIR  361 (1074)
T ss_pred             HHHH
Confidence            8764

>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway

Probab=87.26  E-value=15  Score=29.97  Aligned_cols=75  Identities=21%  Similarity=0.297  Sum_probs=50.1

Q ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHhH-----HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhHHHHHHHH
Q 008304          482 SLEASRALSESLAAENSSLTDSYNQQR-----SVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKIL  556 (570)
Q Consensus       482 aLeks~~laEsLA~ENsALTdryNqQ~-----~~v~qLk~dmErLq~Ei~aQl~~LEs~~~ErdaArle~~aA~ERak~L  556 (570)
                      .++....-.+.|-.+-..+...+....     ..+.....-+..|...|..+...++.+..|+..++..+.+|.-+.+.+
T Consensus        13 ~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~r~~l~~a~~~~k~~   92 (123)
T PF02050_consen   13 ELQEAEEQLEQLQQERQEYQEQLSESQQGVSVAQLRNYQRYISALEQAIQQQQQELERLEQEVEQAREELQEARRERKKL   92 (123)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHT-----SGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333344444444455555555555555     677777788888888888888888888899999988888888777765

Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.

>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT)

Probab=87.24  E-value=22  Score=32.06  Aligned_cols=19  Identities=26%  Similarity=0.511  Sum_probs=12.0

Q ss_pred             HHHHHHHHHhhhhhhhhhh
Q 008304          550 DERAKILASEVIGLEEKVR  568 (570)
Q Consensus       550 ~ERak~LAaEVV~LEEk~l  568 (570)
                      .++=..|-.|+-.++.||-
T Consensus        97 ~~qk~~le~e~~~~~~r~~  115 (132)
T PF07926_consen   97 EEQKEQLEKELSELEQRIE  115 (132)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            4555666667777776664

These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore

>PRK09973 putative outer membrane lipoprotein; Provisional

Probab=86.91  E-value=1.9  Score=37.92  Aligned_cols=44  Identities=27%  Similarity=0.365  Sum_probs=28.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhHHHHH
Q 008304          510 VVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERA  553 (570)
Q Consensus       510 ~v~qLk~dmErLq~Ei~aQl~~LEs~~~ErdaArle~~aA~ERa  553 (570)
                      .|++|..++..|...+..-..+...++..-++|+.|+..|.+|-
T Consensus        25 kvdqLss~V~~L~~kvdql~~dv~~a~aaa~aAk~EA~RAN~Ri   68 (85)
T PRK09973         25 KVNQLASNVQTLNAKIARLEQDMKALRPQIYAAKSEANRANTRL   68 (85)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            44455555555555544444566667777788888888888874

>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP

Probab=86.86  E-value=2.9  Score=34.46  Aligned_cols=45  Identities=22%  Similarity=0.360  Sum_probs=26.4

Q ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhHHHHHH
Q 008304          503 SYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAK  554 (570)
Q Consensus       503 ryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LEs~~~ErdaArle~~aA~ERak  554 (570)
                      +.++....|.+|..++.+|.++|.+-       +.|..+|+.|+..|.+|--
T Consensus         4 kid~Ls~dVq~L~~kvdqLs~dv~~l-------r~~v~~ak~EAaRAN~RlD   48 (56)
T PF04728_consen    4 KIDQLSSDVQTLNSKVDQLSSDVNAL-------RADVQAAKEEAARANQRLD   48 (56)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
Confidence            34555566666777777777655444       4455555556666666643

The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.

>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []

Probab=86.61  E-value=21  Score=32.81  Aligned_cols=97  Identities=25%  Similarity=0.302  Sum_probs=57.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 008304          460 EDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEY  539 (570)
Q Consensus       460 ddFAaLqQhIeDLT~EKfaLqRaLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LEs~~~Er  539 (570)
                      .-+..|+..|.-+.-|.-+|+..+++-.+-=+.|++|--.||..-.+.    ..+..+++.|+       ..++.+...|
T Consensus        16 ~~ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~----~~~~~~~~~L~-------~el~~l~~ry   84 (120)
T PF12325_consen   16 QLVERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEEL----RALKKEVEELE-------QELEELQQRY   84 (120)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH-------HHHHHHHHHH
Confidence            345666777777777777777777776666666666666666554322    22222223333       2233444667


Q ss_pred             HHHHhhhhhHHHHHHHHHHhhhhhhhhh
Q 008304          540 ANVRLECNAADERAKILASEVIGLEEKV  567 (570)
Q Consensus       540 daArle~~aA~ERak~LAaEVV~LEEk~  567 (570)
                      +++-.=+.+-.|+..-|=++|..|-+=+
T Consensus        85 ~t~LellGEK~E~veEL~~Dv~DlK~my  112 (120)
T PF12325_consen   85 QTLLELLGEKSEEVEELRADVQDLKEMY  112 (120)
T ss_pred             HHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence            7777777777777777777776665433

The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].

>TIGR00606 rad50 rad50

Probab=86.35  E-value=12  Score=44.88  Aligned_cols=41  Identities=12%  Similarity=0.078  Sum_probs=20.1

Q ss_pred             hhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 008304          496 ENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFR  536 (570)
Q Consensus       496 ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LEs~~  536 (570)
                      +-+.|...-++++..+..++.+++-|..++..-...++.++
T Consensus       889 ~L~el~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  929 (1311)
T TIGR00606       889 QLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELI  929 (1311)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence            33344444455555555555555555555544444444444

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>smart00787 Spc7 Spc7 kinetochore protein

Probab=86.35  E-value=12  Score=38.85  Aligned_cols=101  Identities=19%  Similarity=0.273  Sum_probs=51.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH----hhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 008304          468 HIEDLTQEKFALQRSLEASRALSESLAA----ENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVR  543 (570)
Q Consensus       468 hIeDLT~EKfaLqRaLeks~~laEsLA~----ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LEs~~~ErdaAr  543 (570)
                      .+.+|-+.+-.|+..+..-+++.+.+..    |=..+-.+.=++-..+...+.++++++++++.-...++..+.+....+
T Consensus       173 ~~~~l~~~~~~L~~e~~~L~~~~~e~~~~d~~eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~  252 (312)
T smart00787      173 IKPKLRDRKDALEEELRQLKQLEDELEDCDPTELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELN  252 (312)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444555555555555555555432    333333444444445555555566666665555555555555555555


Q ss_pred             hhhhhHHHH---HH-HHHHhhhhhhhhhh
Q 008304          544 LECNAADER---AK-ILASEVIGLEEKVR  568 (570)
Q Consensus       544 le~~aA~ER---ak-~LAaEVV~LEEk~l  568 (570)
                      .+..+|.-.   .| --..||..|.+++.
T Consensus       253 ~~I~~ae~~~~~~r~~t~~Ei~~Lk~~~~  281 (312)
T smart00787      253 TEIAEAEKKLEQCRGFTFKEIEKLKEQLK  281 (312)
T ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence            555544431   11 23456666666554

This domain is found in cell division proteins which are required for kinetochore-spindle association.

>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7

Probab=86.33  E-value=27  Score=35.41  Aligned_cols=113  Identities=23%  Similarity=0.342  Sum_probs=74.5

Q ss_pred             ccchhhHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH------Hh----hhHHHHHHHHhHHHHH----HHHHH
Q 008304          456 TKHNEDFAALEQHIEDLTQEKFA----LQRSLEASRALSESLA------AE----NSSLTDSYNQQRSVVN----QLKSE  517 (570)
Q Consensus       456 ~~~~ddFAaLqQhIeDLT~EKfa----LqRaLeks~~laEsLA------~E----NsALTdryNqQ~~~v~----qLk~d  517 (570)
                      ++.+++|..+.++|+.|.+-==-    .+|-..+..++.+.++      ..    ...|.+-++.-++.|.    ++.+.
T Consensus        50 ~~~~~eF~Emkey~d~L~~~L~~ieki~~Rl~kr~~ey~~~~~~fgk~~~lws~~E~~L~~~L~~~a~~~d~~~~~~~~~  129 (243)
T cd07666          50 KNRPEEFTEMNEYVEAFSQKINVLDKISQRIYKEQREYFEELKEYGPIYTLWSASEEELADSLKGMASCIDRCCKATDKR  129 (243)
T ss_pred             CCCCHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhccchhhhHHHHHHHHHHHHHHHHHHHH
Confidence            67899999999999988653222    3444445555544432      22    4448999999999988    66665


Q ss_pred             HHHHHHH----HHHHHHHhhhhH---HHHHHHHhhhhhHH--------HHHHHHHHhhhhhhhhhhc
Q 008304          518 MEKLQEE----IKVQLVELESFR---NEYANVRLECNAAD--------ERAKILASEVIGLEEKVRS  569 (570)
Q Consensus       518 mErLq~E----i~aQl~~LEs~~---~ErdaArle~~aA~--------ERak~LAaEVV~LEEk~lq  569 (570)
                      ++.|...    |+.+..-.++++   .+|+.+|++.....        +| ..+..||=.||+|+.+
T Consensus       130 ~~~l~~~f~~~Lkeyv~y~~slK~vlk~R~~~Q~~le~k~e~l~k~~~dr-~~~~~ev~~~e~kve~  195 (243)
T cd07666         130 MKGLSEQLLPVIHEYVLYSETLMGVIKRRDQIQAELDSKVEALANKKADR-DLLKEEIEKLEDKVEC  195 (243)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH-HHHHHHHHHHHHHHHH
Confidence            5555443    444444444444   78888888776543        35 4677788889998753

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.

>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=86.05  E-value=15  Score=44.10  Aligned_cols=108  Identities=17%  Similarity=0.258  Sum_probs=62.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 008304          461 DFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYA  540 (570)
Q Consensus       461 dFAaLqQhIeDLT~EKfaLqRaLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LEs~~~Erd  540 (570)
                      +...|+..|+.+-++=-+--+.+++.....|.|--|.++|.+-----...+.++...++-|..|+..+.+.+..+..+++
T Consensus       788 rlkdl~keik~~k~~~e~~~~~~ek~~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~~~~~  867 (1174)
T KOG0933|consen  788 RLKDLEKEIKTAKQRAEESSKELEKRENEYERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKVEKDVK  867 (1174)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHH
Confidence            33444444444444444444555555666666666666666544444455666666666666666667777777777777


Q ss_pred             HHHhhhhhHHHHHHHHHHhh---hhhhhhhh
Q 008304          541 NVRLECNAADERAKILASEV---IGLEEKVR  568 (570)
Q Consensus       541 aArle~~aA~ERak~LAaEV---V~LEEk~l  568 (570)
                      .++.+.+.-..+-+..--|+   +-..++|+
T Consensus       868 ~~~~el~~~k~k~~~~dt~i~~~~~~~e~~~  898 (1174)
T KOG0933|consen  868 KAQAELKDQKAKQRDIDTEISGLLTSQEKCL  898 (1174)
T ss_pred             HHHHHHHHHHHHHHhhhHHHhhhhhHHHHHH
Confidence            77776666655555554444   44444444

>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily

Probab=85.67  E-value=16  Score=38.46  Aligned_cols=29  Identities=24%  Similarity=0.323  Sum_probs=18.5

Q ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 008304          500 LTDSYNQQRSVVNQLKSEMEKLQEEIKVQ  528 (570)
Q Consensus       500 LTdryNqQ~~~v~qLk~dmErLq~Ei~aQ  528 (570)
                      +..+|-..--.|-+|+.+++.|+++++..
T Consensus       266 l~~~y~~~hP~v~~l~~qi~~l~~~l~~~  294 (498)
T TIGR03007       266 LRLRYTDKHPDVIATKREIAQLEEQKEEE  294 (498)
T ss_pred             HHHHhcccChHHHHHHHHHHHHHHHHHhh
Confidence            33455555566667777777777776554

Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.

>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription

Probab=85.55  E-value=34  Score=32.57  Aligned_cols=33  Identities=24%  Similarity=0.259  Sum_probs=22.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008304          463 AALEQHIEDLTQEKFALQRSLEASRALSESLAA  495 (570)
Q Consensus       463 AaLqQhIeDLT~EKfaLqRaLeks~~laEsLA~  495 (570)
                      ..|+|+|.||-++--.+.++|++.......|..
T Consensus        26 ~~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~   58 (221)
T PF04012_consen   26 KMLEQAIRDMEEQLRKARQALARVMANQKRLER   58 (221)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            788899988877766666666665555444443

The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].

>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases

Probab=85.53  E-value=8.7  Score=39.49  Aligned_cols=100  Identities=15%  Similarity=0.194  Sum_probs=87.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 008304          463 AALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANV  542 (570)
Q Consensus       463 AaLqQhIeDLT~EKfaLqRaLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LEs~~~ErdaA  542 (570)
                      .=+++.++++.++--..+..|+..++....|-++-.+|...|.+......+|+.+++..+.-+..-.--+.+|..|+.+=
T Consensus       217 ~P~~~~l~~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA~~Li~~L~~E~~RW  296 (344)
T PF12777_consen  217 EPKRQKLEEAEAELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERAEKLISGLSGEKERW  296 (344)
T ss_dssp             CHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCC
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHhhhcchhhhH
Confidence            34678889998888889999999999999999999999999999999999999999999988888778889999999998


Q ss_pred             HhhhhhHHHHHHHHHHhhhh
Q 008304          543 RLECNAADERAKILASEVIG  562 (570)
Q Consensus       543 rle~~aA~ERak~LAaEVV~  562 (570)
                      ......-.++...|--.++.
T Consensus       297 ~~~~~~l~~~~~~l~GD~ll  316 (344)
T PF12777_consen  297 SEQIEELEEQLKNLVGDSLL  316 (344)
T ss_dssp             HCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcccHHHHHH
Confidence            88888888888877766654

The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.

>PRK15396 murein lipoprotein; Provisional

Probab=84.81  E-value=3  Score=35.99  Aligned_cols=46  Identities=15%  Similarity=0.322  Sum_probs=24.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhHHHHHHH
Q 008304          510 VVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKI  555 (570)
Q Consensus       510 ~v~qLk~dmErLq~Ei~aQl~~LEs~~~ErdaArle~~aA~ERak~  555 (570)
                      .|++|..++..|..++..-..+...++.+..+|+.|+..|.+|---
T Consensus        26 kvd~LssqV~~L~~kvdql~~dv~~~~~~~~~a~~eA~raN~RlDn   71 (78)
T PRK15396         26 KIDQLSSDVQTLNAKVDQLSNDVNAMRSDVQAAKDDAARANQRLDN   71 (78)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444444444444445555556666666666666666433

>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation

Probab=84.80  E-value=10  Score=32.12  Aligned_cols=59  Identities=27%  Similarity=0.300  Sum_probs=28.8

Q ss_pred             hHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhHHHHHHHH
Q 008304          498 SSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKIL  556 (570)
Q Consensus       498 sALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LEs~~~ErdaArle~~aA~ERak~L  556 (570)
                      +.|-.+|++--..+..|+.++++|+++-..-..+.+.++.|-...+.+.++..+|-+.|
T Consensus         7 ~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~L   65 (72)
T PF06005_consen    7 EQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRSL   65 (72)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444444445555555555554444444444555555555555555555554443

It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=84.51  E-value=35  Score=31.77  Aligned_cols=104  Identities=21%  Similarity=0.295  Sum_probs=62.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 008304          461 DFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYA  540 (570)
Q Consensus       461 dFAaLqQhIeDLT~EKfaLqRaLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LEs~~~Erd  540 (570)
                      ++..+++-|..|+..--.|.-.|++.+.   .|..-...+-.. ......+.+|.+.|..|++|+..--..|.....-..
T Consensus        29 ~~~~~E~EI~sL~~K~~~lE~eld~~~~---~l~~~k~~lee~-~~~~~~~E~l~rriq~LEeele~ae~~L~e~~ekl~  104 (143)
T PF12718_consen   29 ENEQKEQEITSLQKKNQQLEEELDKLEE---QLKEAKEKLEES-EKRKSNAEQLNRRIQLLEEELEEAEKKLKETTEKLR  104 (143)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhH-HHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444555555555544444444443332   222222222222 333345567888888888887777777777777777


Q ss_pred             HHHhhhhhHHHHHHHHHHhhhhhhhhhh
Q 008304          541 NVRLECNAADERAKILASEVIGLEEKVR  568 (570)
Q Consensus       541 aArle~~aA~ERak~LAaEVV~LEEk~l  568 (570)
                      -+-..+.+..-+.+.|=.+.-.+|.|+-
T Consensus       105 e~d~~ae~~eRkv~~le~~~~~~E~k~e  132 (143)
T PF12718_consen  105 EADVKAEHFERKVKALEQERDQWEEKYE  132 (143)
T ss_pred             HHHHHhHHHHHHHHHHHhhHHHHHHHHH
Confidence            7777777777777777777777777764

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].

>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins

Probab=84.49  E-value=14  Score=33.26  Aligned_cols=82  Identities=27%  Similarity=0.343  Sum_probs=43.0

Q ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH------HHHHHhhhhhHHHH
Q 008304          479 LQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNE------YANVRLECNAADER  552 (570)
Q Consensus       479 LqRaLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LEs~~~E------rdaArle~~aA~ER  552 (570)
                      +...++...+-++.||..|-++-.++.+++..+.++..++..|+.+...-...+..+..-      +...+..+..|+|-
T Consensus        32 ~~~~~~~l~~~n~~lAe~nL~~~~~l~~~r~~l~~~~~~~~~L~~~~~~k~~~~~~l~~~~s~~~l~~~L~~~~~e~eee  111 (150)
T PF07200_consen   32 LQQEREELLAENEELAEQNLSLEPELEELRSQLQELYEELKELESEYQEKEQQQDELSSNYSPDALLARLQAAASEAEEE  111 (150)
T ss_dssp             HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHH
Confidence            333444444455666777766666666666666666666666666655544444444322      23344555666666


Q ss_pred             HHHHHHhh
Q 008304          553 AKILASEV  560 (570)
Q Consensus       553 ak~LAaEV  560 (570)
                      +..||-+.
T Consensus       112 Se~lae~f  119 (150)
T PF07200_consen  112 SEELAEEF  119 (150)
T ss_dssp             HHHHC-S-
T ss_pred             HHHHHHHH
Confidence            66665544

The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.

>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=84.17  E-value=6.8  Score=34.16  Aligned_cols=45  Identities=22%  Similarity=0.406  Sum_probs=31.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 008304          460 EDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSY  504 (570)
Q Consensus       460 ddFAaLqQhIeDLT~EKfaLqRaLeks~~laEsLA~ENsALTdry  504 (570)
                      |-++-||=.||+|.+++-.|+...+-++.--|.|..||+.|...-
T Consensus        18 dTI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~   62 (79)
T COG3074          18 DTITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQ   62 (79)
T ss_pred             HHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345667777888888888887777777777777777776554433

>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function

Probab=84.14  E-value=21  Score=34.94  Aligned_cols=55  Identities=22%  Similarity=0.266  Sum_probs=40.9

Q ss_pred             HHhhhHHHHHHHHh--HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhh
Q 008304          494 AAENSSLTDSYNQQ--RSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNA  548 (570)
Q Consensus       494 A~ENsALTdryNqQ--~~~v~qLk~dmErLq~Ei~aQl~~LEs~~~ErdaArle~~a  548 (570)
                      --+|=+|+.+|-..  ..-..+|...+++|+.+++.+.-+++.+-.+|-..|+++..
T Consensus       119 R~~NLeLl~~~g~naW~~~n~~Le~~~~~le~~l~~~k~~ie~vN~~RK~~Q~~~~~  175 (221)
T PF05700_consen  119 RLENLELLSKYGENAWLIHNEQLEAMLKRLEKELAKLKKEIEEVNRERKRRQEEAGE  175 (221)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence            34555677766333  33457788888899999999999999999988888887654

The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].

>PRK10698 phage shock protein PspA; Provisional

Probab=83.97  E-value=44  Score=33.00  Aligned_cols=24  Identities=4%  Similarity=0.098  Sum_probs=14.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Q 008304          462 FAALEQHIEDLTQEKFALQRSLEA  485 (570)
Q Consensus       462 FAaLqQhIeDLT~EKfaLqRaLek  485 (570)
                      ..+|.|.|.||-..--.+.++|++
T Consensus        26 ~k~l~q~i~em~~~l~~~r~alA~   49 (222)
T PRK10698         26 QKLVRLMIQEMEDTLVEVRSTSAR   49 (222)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456777777776655555444444

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins

Probab=83.58  E-value=16  Score=43.60  Aligned_cols=38  Identities=26%  Similarity=0.443  Sum_probs=17.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhHH
Q 008304          513 QLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAAD  550 (570)
Q Consensus       513 qLk~dmErLq~Ei~aQl~~LEs~~~ErdaArle~~aA~  550 (570)
                      +++.++.+.+.+++.....++.++.++.+.+.++..+.
T Consensus       639 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  676 (1201)
T PF12128_consen  639 ELKREITQAEQELKQAEQDLQRLKNEREQLKQEIEEAK  676 (1201)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444444444444444555555555555554443

>PF05615 THOC7: Tho complex subunit 7; InterPro: IPR008501 The Tho complex (THOC) is involved in transcription elongation and mRNA export from the nucleus []

Probab=83.43  E-value=29  Score=31.18  Aligned_cols=84  Identities=20%  Similarity=0.214  Sum_probs=59.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 008304          464 ALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVR  543 (570)
Q Consensus       464 aLqQhIeDLT~EKfaLqRaLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LEs~~~ErdaAr  543 (570)
                      ..+...++|..+.-+++=.+.+++-+++.-..|-+.....+-+--..+.+++.+|+.|+.++..-...+.. +.|||+.-
T Consensus        43 ~~~~~~e~~l~~l~~~e~~~~k~q~~~~~n~~e~e~Y~~~~~~i~~~i~~~k~~ie~lk~~L~~ak~~r~~-k~eyd~La  121 (139)
T PF05615_consen   43 ESQFLYERLLKELAQFEFSILKSQLILEMNKRERENYEQLNEEIEQEIEQAKKEIEELKEELEEAKRVRQN-KEEYDALA  121 (139)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence            34556677888888888888888888887777776666666666677778888888888776655444433 34777765


Q ss_pred             hhhhh
Q 008304          544 LECNA  548 (570)
Q Consensus       544 le~~a  548 (570)
                      -.++.
T Consensus       122 ~~I~~  126 (139)
T PF05615_consen  122 KKINS  126 (139)
T ss_pred             HHHhc
Confidence            55544

This entry represents the subunit THOC7, which is found in higher eukaryotes, and the non-homologous subunit Mft1p found in yeast. The funtions of these subunits are unknown, and it is not known if these subunits are functionally equivalent.

>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]

Probab=83.36  E-value=15  Score=43.57  Aligned_cols=106  Identities=22%  Similarity=0.279  Sum_probs=64.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHhhhHHHH--------------HHHHhHHHHHHHHHHHH
Q 008304          461 DFAALEQHIEDLTQEKFALQRSLEA-------SRALSESLAAENSSLTD--------------SYNQQRSVVNQLKSEME  519 (570)
Q Consensus       461 dFAaLqQhIeDLT~EKfaLqRaLek-------s~~laEsLA~ENsALTd--------------ryNqQ~~~v~qLk~dmE  519 (570)
                      .|..|-..+.+|-+|+..|+|-...       ++.-.+.+..+|..|-|              ++-.|...+++|+.+++
T Consensus       425 ry~klkek~t~l~~~h~~lL~K~~di~kQle~~~~s~~~~~~~~~~L~d~le~~~~~~~~~~~K~e~~~~~le~l~~El~  504 (980)
T KOG0980|consen  425 RYEKLKEKYTELRQEHADLLRKYDDIQKQLESAEQSIDDVEEENTNLNDQLEELQRAAGRAETKTESQAKALESLRQELA  504 (980)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            3445555666677777777765432       22222234444443332              45567778888888888


Q ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHhhhhhHHHHHHHHHHh-hhhhhhh
Q 008304          520 KLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASE-VIGLEEK  566 (570)
Q Consensus       520 rLq~Ei~aQl~~LEs~~~ErdaArle~~aA~ERak~LAaE-VV~LEEk  566 (570)
                      .|+.|++.+...++....++.+--.+.-+.-+.=-.+++| |+.+||+
T Consensus       505 ~l~~e~~~lq~~~~~~~qs~~~~~~~l~~~l~~KD~~~~~~~~~~~e~  552 (980)
T KOG0980|consen  505 LLLIELEELQRTLSNLAQSHNNQLAQLEDLLKQKDRLAAELVAREEER  552 (980)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            8888888888888888777766655555554444444444 4445444

>PRK15422 septal ring assembly protein ZapB; Provisional

Probab=83.15  E-value=8.5  Score=33.75  Aligned_cols=60  Identities=23%  Similarity=0.372  Sum_probs=41.6

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHH
Q 008304          460 EDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEME  519 (570)
Q Consensus       460 ddFAaLqQhIeDLT~EKfaLqRaLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmE  519 (570)
                      |-++-||--|++|-+++..|....+.++.--+.|..||..|...-|.=-..+..|=..|+
T Consensus        18 dtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~LLGkm~   77 (79)
T PRK15422         18 DTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGRME   77 (79)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            456777778888888888888777777777777777777766665555555555544443

>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system []

Probab=83.07  E-value=26  Score=30.52  Aligned_cols=83  Identities=20%  Similarity=0.330  Sum_probs=56.1

Q ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHH---HHHHHHHHhhhhHHHHHHHHhhhhhHHHHHHHH
Q 008304          480 QRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQE---EIKVQLVELESFRNEYANVRLECNAADERAKIL  556 (570)
Q Consensus       480 qRaLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~---Ei~aQl~~LEs~~~ErdaArle~~aA~ERak~L  556 (570)
                      +-.|+....-..-|..-|.+...+|..-+..++.|...+++|.+   +++.++-.+..+-......-.-+..-|+.++. 
T Consensus        13 ~~el~~t~~d~~LLe~mN~~~~~kY~~~~~~~~~l~~~~~~l~~k~~~l~~~l~~Id~Ie~~V~~LE~~v~~LD~ysk~-   91 (99)
T PF10046_consen   13 ESELEATNEDYNLLENMNKATSLKYKKMKDIAAGLEKNLEDLNQKYEELQPYLQQIDQIEEQVTELEQTVYELDEYSKE-   91 (99)
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence            34567777777888889999999999999999999988877765   44555555555555554444444444555543 


Q ss_pred             HHhhhhhhhhhhc
Q 008304          557 ASEVIGLEEKVRS  569 (570)
Q Consensus       557 AaEVV~LEEk~lq  569 (570)
                            ||.|+.+
T Consensus        92 ------LE~k~k~   98 (99)
T PF10046_consen   92 ------LESKFKK   98 (99)
T ss_pred             ------HHHHhhc
Confidence                  5555544

>cd07653 F-BAR_CIP4-like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Cdc42-Interacting Protein 4 and similar proteins

Probab=82.63  E-value=23  Score=34.06  Aligned_cols=89  Identities=20%  Similarity=0.186  Sum_probs=63.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 008304          462 FAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYAN  541 (570)
Q Consensus       462 FAaLqQhIeDLT~EKfaLqRaLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LEs~~~Erda  541 (570)
                      ...+.+++..|..++....+.|.++++.=+.+..|-+.+...|+.-......=+.+++.+++.+.....+.+..+.||..
T Consensus       107 rK~~~~~~~kl~~~~~~~~~~l~kskk~Y~~~~ke~~~a~~k~~~~~~~~~~s~~~~eK~~~k~~k~~~~~~~a~~~Y~~  186 (251)
T cd07653         107 RKKHLSEGSKLQQKLESSIKQLEKSKKAYEKAFKEAEKAKQKYEKADADMNLTKADVEKAKANANLKTQAAEEAKNEYAA  186 (251)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33455666666667777777777777777777777777777766543333333467778888888888888888899988


Q ss_pred             HHhhhhhHH
Q 008304          542 VRLECNAAD  550 (570)
Q Consensus       542 Arle~~aA~  550 (570)
                      +...+|+..
T Consensus       187 ~l~~~N~~~  195 (251)
T cd07653         187 QLQKFNKEQ  195 (251)
T ss_pred             HHHHHHHHH
Confidence            888887774

F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Cdc42-Interacting Protein 4 (CIP4), Formin Binding Protein 17 (FBP17), FormiN Binding Protein 1-Like (FNBP1L), and similar proteins. CIP4 and FNBP1L are Cdc42 effectors that bind Wiskott-Aldrich syndrome protein (WASP) and function in endocytosis. CIP4 and FBP17 bind to the Fas ligand and may be implicated in the inflammatory response. CIP4 may also play a role in phagocytosis. Members of this subfamily typically contain an N-terminal F-BAR domain and a C-terminal SH3 domain. In addition, some members such as FNBP1L contain a central Cdc42-binding HR1 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged l

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

Probab=82.62  E-value=55  Score=33.45  Aligned_cols=83  Identities=19%  Similarity=0.279  Sum_probs=52.3

Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH--HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 008304          458 HNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSL--TDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESF  535 (570)
Q Consensus       458 ~~ddFAaLqQhIeDLT~EKfaLqRaLeks~~laEsLA~ENsAL--TdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LEs~  535 (570)
                      -++++.+|++-++||-.++..++-.++..++=...+-..-.++  .+.||+....+..+++....|+.|+.--+-.++.+
T Consensus        43 ~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~~~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l  122 (239)
T COG1579          43 LNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKDERELRALNIEIQIAKERINSLEDELAELMEEIEKL  122 (239)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3577888999999999999998877776654333322222222  35677777766666666666666655555555555


Q ss_pred             HHHHH
Q 008304          536 RNEYA  540 (570)
Q Consensus       536 ~~Erd  540 (570)
                      ..|..
T Consensus       123 ~~~i~  127 (239)
T COG1579         123 EKEIE  127 (239)
T ss_pred             HHHHH
Confidence            44433

>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=82.52  E-value=25  Score=42.38  Aligned_cols=78  Identities=21%  Similarity=0.310  Sum_probs=46.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhh
Q 008304          469 IEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNA  548 (570)
Q Consensus       469 IeDLT~EKfaLqRaLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LEs~~~ErdaArle~~a  548 (570)
                      |+++-++=-..+|++-..++-..+|.   ..+.+..+.++..+++|+.+++.+.+.+++....++.-.-||.+.+++|.+
T Consensus       750 v~e~~~~Ike~~~~~k~~~~~i~~lE---~~~~d~~~~re~rlkdl~keik~~k~~~e~~~~~~ek~~~e~e~l~lE~e~  826 (1174)
T KOG0933|consen  750 VEESEQQIKEKERALKKCEDKISTLE---KKMKDAKANRERRLKDLEKEIKTAKQRAEESSKELEKRENEYERLQLEHEE  826 (1174)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhHhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333444444443333332   245677778888888888777777777777666666666666666666654


Q ss_pred             H
Q 008304          549 A  549 (570)
Q Consensus       549 A  549 (570)
                      -
T Consensus       827 l  827 (1174)
T KOG0933|consen  827 L  827 (1174)
T ss_pred             H
Confidence            3

>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5

Probab=82.21  E-value=27  Score=39.53  Aligned_cols=18  Identities=33%  Similarity=0.721  Sum_probs=7.7

Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 008304          512 NQLKSEMEKLQEEIKVQL  529 (570)
Q Consensus       512 ~qLk~dmErLq~Ei~aQl  529 (570)
                      ..|+.+++.|..++++|.
T Consensus        90 ~~L~kElE~L~~qlqaqv  107 (617)
T PF15070_consen   90 EHLRKELESLEEQLQAQV  107 (617)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            334444444444444443

>cd07647 F-BAR_PSTPIP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Proteins

Probab=82.20  E-value=14  Score=36.08  Aligned_cols=86  Identities=16%  Similarity=0.110  Sum_probs=56.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 008304          464 ALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVR  543 (570)
Q Consensus       464 aLqQhIeDLT~EKfaLqRaLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LEs~~~ErdaAr  543 (570)
                      .++.+++.+...+-.+...|.++++.=+....|.+.+...|..+..-+  -+.++|.++.-+.--..+.+..+.||..+.
T Consensus       103 ~~~~~~~k~qk~~~~~~~~l~KaKk~Y~~~C~e~e~a~~~~~~~~~~~--~~ke~eK~~~K~~k~~~~~~~a~~~Y~~~v  180 (239)
T cd07647         103 KTEDIMKRSQKNKKELYKKTMKAKKSYEQKCREKDKAEQAYEKSSSGA--QPKEAEKLKKKAAQCKTSAEEADSAYKSSI  180 (239)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445566666666666677777777777777777777777776655432  245677777666665566666777787776


Q ss_pred             hhhhhHHH
Q 008304          544 LECNAADE  551 (570)
Q Consensus       544 le~~aA~E  551 (570)
                      ...+.+..
T Consensus       181 ~~l~~~~~  188 (239)
T cd07647         181 GCLEDARV  188 (239)
T ss_pred             HHHHHHHH
Confidence            66665543

F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Vetebrates contain two Proline-Serine-Threonine Phosphatase-Interacting Proteins (PSTPIPs), PSTPIP1 and PSTPIP2. PSTPIPs are mainly expressed in hematopoietic cells and are involved in the regulation of cell adhesion and motility. Mutations in PSTPIPs have been shown to cause autoinflammatory disorders. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain, while PSTPIP2 contains only the N-terminal F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.

>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family

Probab=82.17  E-value=9.8  Score=36.95  Aligned_cols=71  Identities=23%  Similarity=0.385  Sum_probs=48.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhHHHHHHHH
Q 008304          477 FALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKIL  556 (570)
Q Consensus       477 faLqRaLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LEs~~~ErdaArle~~aA~ERak~L  556 (570)
                      +++++.|.......+.|..||++|.+.-.+....+.+|+.+++.|+       ..+..+..+|...    -..++||+.|
T Consensus        86 I~fLq~l~~~~~~~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~-------~~~~~~~eDY~~L----~~Im~RARkl  154 (161)
T TIGR02894        86 ISFLQNLKTTNPSDQALQKENERLKNQNESLQKRNEELEKELEKLR-------QRLSTIEEDYQTL----IDIMDRARKL  154 (161)
T ss_pred             HHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH----HHHHHHHHHH
Confidence            4566677777777888999999987765555555555555555554       5566677777654    4688999998


Q ss_pred             HH
Q 008304          557 AS  558 (570)
Q Consensus       557 Aa  558 (570)
                      +.
T Consensus       155 ~~  156 (161)
T TIGR02894       155 AV  156 (161)
T ss_pred             Hh
Confidence            73

In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.

>TIGR02680 conserved hypothetical protein TIGR02680

Probab=82.04  E-value=29  Score=42.16  Aligned_cols=13  Identities=23%  Similarity=0.199  Sum_probs=6.9

Q ss_pred             CcccCCccccccC
Q 008304          317 FKRSEYSGYNFDA  329 (570)
Q Consensus       317 ~~~S~s~~~~~d~  329 (570)
                      -...++||+..=.
T Consensus       725 k~~a~~IG~~aR~  737 (1353)
T TIGR02680       725 KPAAEYIGAAARE  737 (1353)
T ss_pred             CcchhHhhHHHHH
Confidence            4446666665433

Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.

>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]

Probab=82.00  E-value=37  Score=32.12  Aligned_cols=84  Identities=32%  Similarity=0.364  Sum_probs=57.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHH---HHHHHHhhhhHHHH
Q 008304          463 AALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEI---KVQLVELESFRNEY  539 (570)
Q Consensus       463 AaLqQhIeDLT~EKfaLqRaLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei---~aQl~~LEs~~~Er  539 (570)
                      -.|+.-++..-++|..+.+..+-+++.+++|-++-+.||..-|+-...+..|.++.+.|-+++   +.+..+|++...+.
T Consensus        27 ~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~~~~~~  106 (140)
T PF10473_consen   27 ESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSELESLNSSL  106 (140)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence            344444455555666677777778888888888888888888888888887777766665443   45567777777666


Q ss_pred             HHHHhhh
Q 008304          540 ANVRLEC  546 (570)
Q Consensus       540 daArle~  546 (570)
                      .+...+.
T Consensus       107 ~~~l~~~  113 (140)
T PF10473_consen  107 ENLLQEK  113 (140)
T ss_pred             HHHHHHH
Confidence            6555443

There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding

>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues

Probab=81.89  E-value=8.5  Score=40.41  Aligned_cols=60  Identities=28%  Similarity=0.427  Sum_probs=30.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHH
Q 008304          463 AALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQ  522 (570)
Q Consensus       463 AaLqQhIeDLT~EKfaLqRaLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq  522 (570)
                      +-||+.+..++.|+-.|+.-|..+++.=.+|+.|...|-++|=+-.+.+.+-++++..|+
T Consensus       244 vdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY~E~~~mL~EaQEElk~lR  303 (306)
T PF04849_consen  244 VDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDKYAECMAMLHEAQEELKTLR  303 (306)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            334444455555555555555555555555555555555555554444444444444443

HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].

>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []

Probab=81.70  E-value=26  Score=35.01  Aligned_cols=86  Identities=17%  Similarity=0.244  Sum_probs=41.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhh
Q 008304          468 HIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECN  547 (570)
Q Consensus       468 hIeDLT~EKfaLqRaLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LEs~~~ErdaArle~~  547 (570)
                      -...+-+|+..|.+--..+.+..+.|..+.......=.+....+.++..++.+|..+++....+.+.++.+.-.||-.-.
T Consensus        41 k~k~aeeea~~Le~k~~eaee~~~rL~~~~~~~~eEk~~Le~e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~~ar~~~~  120 (246)
T PF00769_consen   41 KLKQAEEEAEELEQKRQEAEEEKQRLEEEAEMQEEEKEQLEQELREAEAEIARLEEESERKEEEAEELQEELEEAREDEE  120 (246)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333334444444444444444444444444444334444566666666677777766666666677766666666655


Q ss_pred             hHHHHH
Q 008304          548 AADERA  553 (570)
Q Consensus       548 aA~ERa  553 (570)
                      .|.++.
T Consensus       121 ~ak~~L  126 (246)
T PF00769_consen  121 EAKEEL  126 (246)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            555554

Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins

Probab=81.43  E-value=16  Score=43.49  Aligned_cols=67  Identities=15%  Similarity=0.270  Sum_probs=37.6

Q ss_pred             hHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhh-hHHHHHHHHHHhhhhhh
Q 008304          498 SSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECN-AADERAKILASEVIGLE  564 (570)
Q Consensus       498 sALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LEs~~~ErdaArle~~-aA~ERak~LAaEVV~LE  564 (570)
                      .++...|+++...+.+++-.+++.+.+++....+..+++.+...+..+.. .+.++-..+..++..|.
T Consensus       631 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~  698 (1201)
T PF12128_consen  631 KQINKKIEELKREITQAEQELKQAEQDLQRLKNEREQLKQEIEEAKEERKEQIEEQLNELEEELKQLK  698 (1201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33455666677677666666666666666666666666655555544443 33333444444444444

>PRK05689 fliJ flagellar biosynthesis chaperone; Validated

Probab=81.36  E-value=40  Score=30.22  Aligned_cols=93  Identities=16%  Similarity=0.132  Sum_probs=64.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHH-------------HHHHHHHHHHHHHHHHHHHHH
Q 008304          464 ALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRS-------------VVNQLKSEMEKLQEEIKVQLV  530 (570)
Q Consensus       464 aLqQhIeDLT~EKfaLqRaLeks~~laEsLA~ENsALTdryNqQ~~-------------~v~qLk~dmErLq~Ei~aQl~  530 (570)
                      +|+.+++=..++.-.....|++++.-.+.....-..|.+..++-..             .+.....=+.+|.+.|..|.-
T Consensus         6 rL~~vl~l~~~~ee~a~~~la~a~~~~~~~~~~L~~L~~y~~~y~~~~~~~~~~g~~~~~l~~~~~fi~~L~~~I~~q~~   85 (147)
T PRK05689          6 ALATLLDLAEKAEEQAALQLGQARQELQQAEQQLKMLEDYRLEYRQQLNDRGSAGMTSSWWINYQQFLQQLEKAITQQRQ   85 (147)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5777776666666666667777666665555555555333322211             223344458999999999999


Q ss_pred             HhhhhHHHHHHHHhhhhhHHHHHHHH
Q 008304          531 ELESFRNEYANVRLECNAADERAKIL  556 (570)
Q Consensus       531 ~LEs~~~ErdaArle~~aA~ERak~L  556 (570)
                      .|+.+..+.+.+|....+|.-+-|+|
T Consensus        86 ~v~~~~~~ve~~r~~~~~a~~~~k~l  111 (147)
T PRK05689         86 QLTQWTQKVDNARKYWQEKKQRLEAL  111 (147)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999998777765

>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch

Probab=81.26  E-value=42  Score=30.43  Aligned_cols=15  Identities=20%  Similarity=0.180  Sum_probs=7.3

Q ss_pred             hhhHHHHHHHHHHHH
Q 008304          459 NEDFAALEQHIEDLT  473 (570)
Q Consensus       459 ~ddFAaLqQhIeDLT  473 (570)
                      .++..++=..|-+|-
T Consensus        30 ~~~~~~vin~i~~Ll   44 (151)
T PF11559_consen   30 EDNDVRVINCIYDLL   44 (151)
T ss_pred             cccHHHHHHHHHHHH
Confidence            444455555554443

pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=81.24  E-value=34  Score=33.85  Aligned_cols=37  Identities=27%  Similarity=0.447  Sum_probs=27.3

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008304          459 NEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAA  495 (570)
Q Consensus       459 ~ddFAaLqQhIeDLT~EKfaLqRaLeks~~laEsLA~  495 (570)
                      ..+...|.+.|++++.||-.|+-.+...+.-++.+-.
T Consensus        53 e~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~   89 (312)
T PF00038_consen   53 EEELRELRRQIDDLSKEKARLELEIDNLKEELEDLRR   89 (312)
T ss_dssp             HHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHH
Confidence            4567788899999999998888777766665555433

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]

Probab=81.23  E-value=17  Score=43.08  Aligned_cols=63  Identities=22%  Similarity=0.268  Sum_probs=55.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 008304          464 ALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIK  526 (570)
Q Consensus       464 aLqQhIeDLT~EKfaLqRaLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~  526 (570)
                      ..+|..-++...|+.|.+.+..+|+..+++-..+.+|-=.+++|.-...+-..+-|+|++|.+
T Consensus       334 ~~~~~~~e~~~~~~~l~~~~~ear~~~~q~~~ql~~le~~~~e~q~~~qe~~~e~eqLr~ela  396 (980)
T KOG0980|consen  334 QIEQLSREVAQLKAQLENLKEEARRRIEQYENQLLALEGELQEQQREAQENREEQEQLRNELA  396 (980)
T ss_pred             HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence            456777888889999999999999999999999999999999999988888888888887743

>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP

Probab=81.15  E-value=7.9  Score=31.95  Aligned_cols=48  Identities=29%  Similarity=0.373  Sum_probs=35.7

Q ss_pred             HHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhh
Q 008304          488 ALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECN  547 (570)
Q Consensus       488 ~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LEs~~~ErdaArle~~  547 (570)
                      +=++.|..+.+.|..+.++....|+.|+.++...++|            ++|+|.|+.-.
T Consensus         3 akid~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~E------------AaRAN~RlDN~   50 (56)
T PF04728_consen    3 AKIDQLSSDVQTLNSKVDQLSSDVNALRADVQAAKEE------------AARANQRLDNI   50 (56)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHhh
Confidence            3467788888888888888777777777777766666            77777777543

The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.

>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins

Probab=81.11  E-value=25  Score=31.72  Aligned_cols=85  Identities=20%  Similarity=0.215  Sum_probs=49.8

Q ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhHHHHHHHHHHhhhh
Q 008304          483 LEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIG  562 (570)
Q Consensus       483 Leks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LEs~~~ErdaArle~~aA~ERak~LAaEVV~  562 (570)
                      +...+...+.|-.+|..|.+..=.....+.+++.++..+..+++.-.........+++.+...+.-..=++ .|-..+-.
T Consensus        29 ~~~~~~~~~~l~~~n~~lAe~nL~~~~~l~~~r~~l~~~~~~~~~L~~~~~~k~~~~~~l~~~~s~~~l~~-~L~~~~~e  107 (150)
T PF07200_consen   29 VQELQQEREELLAENEELAEQNLSLEPELEELRSQLQELYEELKELESEYQEKEQQQDELSSNYSPDALLA-RLQAAASE  107 (150)
T ss_dssp             -HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHH-HHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHH-HHHHHHHH
Confidence            45666777888888998888776666666666666666666666555555555555555544444333222 35555666


Q ss_pred             hhhhhh
Q 008304          563 LEEKVR  568 (570)
Q Consensus       563 LEEk~l  568 (570)
                      .|+.|-
T Consensus       108 ~eeeSe  113 (150)
T PF07200_consen  108 AEEESE  113 (150)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            666554

The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.

>PRK03918 chromosome segregation protein; Provisional

Probab=80.84  E-value=46  Score=37.31  Aligned_cols=20  Identities=15%  Similarity=0.360  Sum_probs=8.8

Q ss_pred             hHHHHHHHHHHhhhhhhhhh
Q 008304          548 AADERAKILASEVIGLEEKV  567 (570)
Q Consensus       548 aA~ERak~LAaEVV~LEEk~  567 (570)
                      ...++.+.+-.|+..|+++.
T Consensus       256 ~l~~~i~~l~~el~~l~~~l  275 (880)
T PRK03918        256 KLEEKIRELEERIEELKKEI  275 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            33333444444544444443

>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]

Probab=80.66  E-value=26  Score=44.52  Aligned_cols=107  Identities=19%  Similarity=0.269  Sum_probs=76.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 008304          462 FAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYAN  541 (570)
Q Consensus       462 FAaLqQhIeDLT~EKfaLqRaLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LEs~~~Erda  541 (570)
                      +..||.-++.=+++|..=++++-+..+-+..|-.-++.=.+.+=+-...|..|+..+..+++++.-....--.....|-.
T Consensus      1810 ir~LE~~l~~E~~~~~e~~k~~rk~er~vkEl~~q~eed~k~~~~~q~~~dkl~~k~~~~krQleeaE~~~~~~~~k~R~ 1889 (1930)
T KOG0161|consen 1810 IRELESELEGEQRRKAEAIKGLRKKERRVKELQFQVEEDKKNIERLQDLVDKLQAKIKQYKRQLEEAEEEANQNLSKYRK 1889 (1930)
T ss_pred             HHHHHHHHhHhhhhhHHHhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence            34444445555777888888887777777777666666566555555566666666666666665555555666688889


Q ss_pred             HHhhhhhHHHHHHHHHHhhhhhhhhhh
Q 008304          542 VRLECNAADERAKILASEVIGLEEKVR  568 (570)
Q Consensus       542 Arle~~aA~ERak~LAaEVV~LEEk~l  568 (570)
                      .|-++.+|.||+..+..+|.-|=-|.+
T Consensus      1890 ~q~ele~a~erad~~e~~~~~lr~k~r 1916 (1930)
T KOG0161|consen 1890 LQRELEEAEERADTAESELNKLRSKLR 1916 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999988866654

>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8

Probab=80.66  E-value=12  Score=35.07  Aligned_cols=31  Identities=26%  Similarity=0.471  Sum_probs=15.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 008304          511 VNQLKSEMEKLQEEIKVQLVELESFRNEYAN  541 (570)
Q Consensus       511 v~qLk~dmErLq~Ei~aQl~~LEs~~~Erda  541 (570)
                      ...+++++++|+.|++....++++++...++
T Consensus       156 ~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~  186 (192)
T PF05529_consen  156 NKKLSEEIEKLKKELEKKEKEIEALKKQSEG  186 (192)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444555555555555555555555443333

Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane

>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]

Probab=80.57  E-value=24  Score=41.90  Aligned_cols=103  Identities=17%  Similarity=0.208  Sum_probs=68.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH----------HHHHhHHHHHHH----HHHHHHHHHHHH---H
Q 008304          465 LEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTD----------SYNQQRSVVNQL----KSEMEKLQEEIK---V  527 (570)
Q Consensus       465 LqQhIeDLT~EKfaLqRaLeks~~laEsLA~ENsALTd----------ryNqQ~~~v~qL----k~dmErLq~Ei~---a  527 (570)
                      |+-...+||++|.+++-+|--|+.-+|.+-+--..|-.          +.-+-.--+.++    .+.++.++++|.   -
T Consensus       321 lh~enmkltrqkadirc~LlEarrk~egfddk~~eLEKkrd~al~dvr~i~e~k~nve~elqsL~~l~aerqeQidelKn  400 (1265)
T KOG0976|consen  321 LHLENMKLTRQKADIRCALLEARRKAEGFDDKLNELEKKRDMALMDVRSIQEKKENVEEELQSLLELQAERQEQIDELKN  400 (1265)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44455678999999999999999888877654433322          111222222222    233333333332   2


Q ss_pred             HHHHhhhhHHHHHHHHhhhhhHHHHHHHHHHhhhhhhhhh
Q 008304          528 QLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKV  567 (570)
Q Consensus       528 Ql~~LEs~~~ErdaArle~~aA~ERak~LAaEVV~LEEk~  567 (570)
                      .+.-++..+..-.+|.-+...|.||+-.|-.+.+-+|-+|
T Consensus       401 ~if~~e~~~~dhe~~kneL~~a~ekld~mgthl~mad~Q~  440 (1265)
T KOG0976|consen  401 HIFRLEQGKKDHEAAKNELQEALEKLDLMGTHLSMADYQL  440 (1265)
T ss_pred             hhhhhhhccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence            3344566677788999999999999999999999998776

>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences

Probab=80.33  E-value=22  Score=32.87  Aligned_cols=68  Identities=31%  Similarity=0.456  Sum_probs=40.7

Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 008304          458 HNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRN  537 (570)
Q Consensus       458 ~~ddFAaLqQhIeDLT~EKfaLqRaLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LEs~~~  537 (570)
                      ..++.++|...|.+|.+|=-.|...+...+   ..|+.=+..+|         ..+|...+++|+.|++.-...|+.++.
T Consensus        70 s~eel~~ld~ei~~L~~el~~l~~~~k~l~---~eL~~L~~~~t---------~~el~~~i~~l~~e~~~l~~kL~~l~~  137 (169)
T PF07106_consen   70 SPEELAELDAEIKELREELAELKKEVKSLE---AELASLSSEPT---------NEELREEIEELEEEIEELEEKLEKLRS  137 (169)
T ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhcCCC---------HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            366788888889888887666655544333   23333333333         245666666666666666666666654

TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].

>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed

Probab=80.17  E-value=14  Score=42.41  Aligned_cols=62  Identities=26%  Similarity=0.310  Sum_probs=37.9

Q ss_pred             ccCCCCcccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 008304          439 RLGSNESSIENQHGFYSTKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSY  504 (570)
Q Consensus       439 ~~~~~e~~~~~~~~F~s~~~~ddFAaLqQhIeDLT~EKfaLqRaLeks~~laEsLA~ENsALTdry  504 (570)
                      +.|.++..+++-..++.    ++-..++..|++|.+++..++...+...++-+.+......|.+.+
T Consensus       496 ~~Glp~~ii~~A~~~~~----~~~~~~~~li~~l~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~  557 (782)
T PRK00409        496 RLGLPENIIEEAKKLIG----EDKEKLNELIASLEELERELEQKAEEAEALLKEAEKLKEELEEKK  557 (782)
T ss_pred             HhCcCHHHHHHHHHHHh----hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35555666665555554    344578888999999888877666555555444444444444433

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	570
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-04
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	2e-06
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	7e-04
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	7e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 58.7 bits (141), Expect = 4e-09
 Identities = 82/628 (13%), Positives = 168/628 (26%), Gaps = 248/628 (39%)

Query: 48  DFSLHDQHHLEADRVRV------TDLDGAGTSDGPDKAVVSLPLVMH-----NDDNKALK 96
           DF   +  +   D + V       + D     D P K+++S   + H     +  +  L+
Sbjct: 8   DFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMP-KSILSKEEIDHIIMSKDAVSGTLR 66

Query: 97  L-----AQQSQQVSLSDKRINSNCFENDLNSSSAYLAQTYSNNQETSGSAGPVNVSNSQE 151
           L     ++Q + V    ++      E  L  +  +L                       E
Sbjct: 67  LFWTLLSKQEEMV----QKF----VEEVLRINYKFLMSPIKT-----------------E 101

Query: 152 TKDVNNDFVIYSSGQGRLRDGIMSNQFLSLLPEASQDYDSSNSSKSGFQGIEESQSKGND 211
            +  +    +Y   + RL +                                      N 
Sbjct: 102 QRQPSMMTRMYIEQRDRLYND-------------------------------------NQ 124

Query: 212 SFPKVPTLVNSGPSHDFVTKISPQNSVST-LFQSKPSNAIAL----GNG----------- 255
            F K             V+++ P   +   L + +P+  + +    G+G           
Sbjct: 125 VFAK-----------YNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLS 173

Query: 256 HSFHSSSEGTAH-LTTSTGGSASEV-----GLNTPSTTNFSDPVSFNTGEGKPSNSASGL 309
           +      +     L      S   V      L      N++     ++      +S    
Sbjct: 174 YKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAE 233

Query: 310 AS--LQSTPFKRS-------------EYSGYNFD------------------AGNSFNHV 336
               L+S P++                     F+                  +  +  H+
Sbjct: 234 LRRLLKSKPYENCLLVLLNVQNAKAWNA----FNLSCKILLTTRFKQVTDFLSAATTTHI 289

Query: 337 PVSSATNKFTLGKSRASFLDSLNV-------------PRASS--GTL----------FEQ 371
            +   +   T  + ++  L  L+              PR  S               ++ 
Sbjct: 290 SLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKH 349

Query: 372 TEPERDSFMSSSSLNSMDVLGSSPAQNPSMEK---ETTGAFSKTTTSNIPSA------FD 422
              ++ + +  SSLN ++         P+  +   +    F  +   +IP+       FD
Sbjct: 350 VNCDKLTTIIESSLNVLE---------PAEYRKMFDRLSVFPPSA--HIPTILLSLIWFD 398

Query: 423 YLGNPTVSTSDRGDIRRLGSNESSIENQHGFYSTKHNEDFAALEQHIEDLTQEKFALQRS 482
                 V  SD   +       S +E        K  ++       I  +  E   L+  
Sbjct: 399 ------VIKSDVMVVVNKLHKYSLVE--------KQPKESTI---SIPSIYLE---LKVK 438

Query: 483 LEASRALSESLAAENSSLTDSYNQQRSVVNQLKSE--------------MEKLQEEIKVQ 528
           LE   AL       + S+ D YN  ++  +                   ++ ++   ++ 
Sbjct: 439 LENEYAL-------HRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMT 491

Query: 529 LVELESFRNEYANVR-LECNAADERAKI 555
           L     FR  + + R LE        KI
Sbjct: 492 L-----FRMVFLDFRFLE-------QKI 507

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.1 bits (98), Expect = 5e-04
 Identities = 25/185 (13%), Positives = 55/185 (29%), Gaps = 45/185 (24%)

Query: 401 MEKETTGAFSKTTTSNIPSAFDYLGNPTVSTSDRGDIRRL-----GSNESSIENQHGFYS 455
           ++       SK    +I      + +    +       RL        E  ++    F  
Sbjct: 38  VQDMPKSILSKEEIDHI------IMSKDAVSG----TLRLFWTLLSKQEEMVQK---FVE 84

Query: 456 TKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQR-SVVNQL 514
                ++  L   I+   ++   + R     R   + L  +N      YN  R     +L
Sbjct: 85  EVLRINYKFLMSPIKTEQRQPSMMTRMYIEQR---DRLYNDNQVFAK-YNVSRLQPYLKL 140

Query: 515 KSEMEKLQEEIKV----------QLVELESFRNE-----------YANVRLECNAADERA 553
           +  + +L+    V            V L+   +            + N++  CN+ +   
Sbjct: 141 RQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLK-NCNSPETVL 199

Query: 554 KILAS 558
           ++L  
Sbjct: 200 EMLQK 204

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 50.2 bits (120), Expect = 2e-06
 Identities = 23/112 (20%), Positives = 50/112 (44%), Gaps = 7/112 (6%)

Query: 459  NEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEM 518
             +     E  I +L       ++S +    +   L  E+S L +   + ++ + +LK+++
Sbjct: 1031 TKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQL 1090

Query: 519  EKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKVRSL 570
             K +EE++  L  LE   ++  N       A ++ + L S +  L+E + S 
Sbjct: 1091 AKKEEELQAALARLEDETSQKNN-------ALKKIRELESHISDLQEDLESE 1135

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 41.7 bits (98), Expect = 7e-04
 Identities = 26/123 (21%), Positives = 49/123 (39%), Gaps = 14/123 (11%)

Query: 462  FAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVV---------- 511
               LEQ    L +EK  LQ  L+A   L          L     +   ++          
Sbjct: 880  LKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEE 939

Query: 512  ----NQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKV 567
                 QL++E +K+Q+++     +LE        ++LE   AD + K +  +++ +E++ 
Sbjct: 940  EERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQN 999

Query: 568  RSL 570
              L
Sbjct: 1000 NKL 1002

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 41.7 bits (98), Expect = 7e-04
 Identities = 24/116 (20%), Positives = 51/116 (43%), Gaps = 15/116 (12%)

Query: 459  NEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEM 518
             +D   +E     LT+E+  L+   E    L+ +LA E         ++   + +LK++ 
Sbjct: 989  EDDILIMEDQNNKLTKERKLLE---ERVSDLTTNLAEE--------EEKAKNLTKLKNKH 1037

Query: 519  EKLQEEIKVQLVELESFRNE----YANVRLECNAADERAKILASEVIGLEEKVRSL 570
            E +  E++V+L + E  R E       +  E +   E+   L +++  L+ ++   
Sbjct: 1038 ESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKK 1093

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	570
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	96.35
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	95.52
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	95.08
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	94.81
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	94.0
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	93.54
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	93.05
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	92.86
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	91.98
3q8t_A	96	Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90	91.35
3a7p_A	152	Autophagy protein 16; coiled-coil, coiled coil, cy	91.15
3ol1_A	119	Vimentin; structural genomics, PSI-2, protein stru	91.14
3u59_A	101	Tropomyosin beta chain; muscle contraction, actin,	89.91
3u1c_A	101	Tropomyosin alpha-1 chain; anti-parallel coiled co	89.24
3u59_A	101	Tropomyosin beta chain; muscle contraction, actin,	88.04
3o0z_A	168	RHO-associated protein kinase 1; coiled-coil, tran	87.56
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	86.8
2efk_A	301	CDC42-interacting protein 4; EFC domain, structura	86.73
3mq7_A	121	Bone marrow stromal antigen 2; HIV, antiviral prot	85.97
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	85.8
3hnw_A	138	Uncharacterized protein; coiled-coil, structural g	85.54
3hnw_A	138	Uncharacterized protein; coiled-coil, structural g	85.53
2no2_A	107	HIP-I, huntingtin-interacting protein 1; clathrin	84.9
2jee_A	81	YIIU; FTSZ, septum, coiled-coil, cell division, ce	84.72
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	84.64
1jcd_A	52	Major outer membrane lipoprotein; protein folding,	84.64
2efl_A	305	Formin-binding protein 1; EFC domain, structural g	84.13
3swk_A	86	Vimentin; cytoskeleton, intermediate filament, alp	82.92
2i1j_A	575	Moesin; FERM, coiled-coil, C-ermad, ERM, radixin,	82.61
2jee_A	81	YIIU; FTSZ, septum, coiled-coil, cell division, ce	82.55
3ajw_A	150	Flagellar FLIJ protein; flagellum, type III secret	82.29
4emc_A	190	Monopolin complex subunit CSM1; RWD domain, kineto	81.33
3ol1_A	119	Vimentin; structural genomics, PSI-2, protein stru	81.09

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A

Probab=96.35  E-value=0.16  Score=43.86  Aligned_cols=58  Identities=7%  Similarity=0.077  Sum_probs=22.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHH
Q 008304          465 LEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQ  522 (570)
Q Consensus       465 LqQhIeDLT~EKfaLqRaLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq  522 (570)
                      |+..|++|..+.-.+...+...+.-.+.+..+-..+....+.....+..++.++.+++
T Consensus        25 l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (284)
T 1c1g_A           25 AEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKYSEALKDAQEKLELAEKKATDAE   82 (284)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333334444444333333433333333333333333333333333333

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=95.52  E-value=0.28  Score=49.71  Aligned_cols=110  Identities=15%  Similarity=0.170  Sum_probs=65.6

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-----------HHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 008304          460 EDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENS-----------SLTDSYNQQRSVVNQLKSEMEKLQEEIKVQ  528 (570)
Q Consensus       460 ddFAaLqQhIeDLT~EKfaLqRaLeks~~laEsLA~ENs-----------ALTdryNqQ~~~v~qLk~dmErLq~Ei~aQ  528 (570)
                      ++...++.-|..|.+|....+++++..++-.+..-.+-.           .+.+.+-+.......+.++..+++++++..
T Consensus       456 ~e~~~~~~~i~~l~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  535 (597)
T 3oja_B          456 AEVNELRAEVQQLTNEQIQQEQLLQGLHAEIDTNLRRYRLPKDGLARSSDNLNKVFTHLKERQAFKLRETQARRTEADAK  535 (597)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCccccccCCHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhh
Confidence            355556666666777767777777666655554433222           222222222333333444445555666666


Q ss_pred             HHHhhhhHHHHHHHHhhhhhHHHHHHHHHHhhhhhhhhhhc
Q 008304          529 LVELESFRNEYANVRLECNAADERAKILASEVIGLEEKVRS  569 (570)
Q Consensus       529 l~~LEs~~~ErdaArle~~aA~ERak~LAaEVV~LEEk~lq  569 (570)
                      ..+++.++.|+++.+..+....++.+.|.-|.-.+..++.+
T Consensus       536 ~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~  576 (597)
T 3oja_B          536 QKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQ  576 (597)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Confidence            67777777777788888888888888777776666655544

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A

Probab=95.08  E-value=0.045  Score=61.81  Aligned_cols=8  Identities=25%  Similarity=0.389  Sum_probs=3.5

Q ss_pred             HHHHHHHH
Q 008304           24 EEFRKKKA   31 (570)
Q Consensus        24 eefrkkka   31 (570)
                      ++|..=+.
T Consensus       329 ~~f~~~~~  336 (1184)
T 1i84_S          329 EMFQETLE  336 (1184)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            44444433

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=94.81  E-value=0.2  Score=50.72  Aligned_cols=71  Identities=11%  Similarity=0.111  Sum_probs=51.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhh
Q 008304          476 KFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLEC  546 (570)
Q Consensus       476 KfaLqRaLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LEs~~~ErdaArle~  546 (570)
                      |-.|.+.+++-++..+.+..++..+-+++++......+|+.+++++++.++.+...++.++.|.++.+.+.
T Consensus       504 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~  574 (597)
T 3oja_B          504 SDNLNKVFTHLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKV  574 (597)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence            35566666666777777777777777777777777777778888888887777777777777766665543

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=94.00  E-value=0.63  Score=46.49  Aligned_cols=105  Identities=17%  Similarity=0.067  Sum_probs=58.4

Q ss_pred             cccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH-------------------HhHHHHHH
Q 008304          453 FYSTKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYN-------------------QQRSVVNQ  513 (570)
Q Consensus       453 F~s~~~~ddFAaLqQhIeDLT~EKfaLqRaLeks~~laEsLA~ENsALTdryN-------------------qQ~~~v~q  513 (570)
                      |+.+. .+++..+++....+.+||..|...+.+.++.-+....+......+..                   ++.....+
T Consensus       347 yC~s~-~~~~~~~~~~~~~l~~~~~~le~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~  425 (487)
T 3oja_A          347 QYRTV-IDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIELQHATEEQSPLQLLRAIVKRYEEMYVE  425 (487)
T ss_dssp             HTCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCCCCCSSCCCHHHHHHHHHHHHHHHHHH
T ss_pred             HhcCh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhchhhhcccccccCcHHHHHHHHHHHHHHHHH
Confidence            44443 44777778777788888888877777777555554444433322222                   12222223


Q ss_pred             H--------------HHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhHHHHHHHHHH
Q 008304          514 L--------------KSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILAS  558 (570)
Q Consensus       514 L--------------k~dmErLq~Ei~aQl~~LEs~~~ErdaArle~~aA~ERak~LAa  558 (570)
                      +              ++++++|++|.+.+.-+++.+..+.+-|++.+.+|..|-+.||.
T Consensus       426 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  484 (487)
T 3oja_A          426 QQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALASANATLQELVVREQNLAS  484 (487)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcccHHHHHHHHHHHHHH
Confidence            3              33333344444444444455555555566666677777777765

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=93.54  E-value=0.26  Score=55.98  Aligned_cols=57  Identities=16%  Similarity=0.171  Sum_probs=27.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhHHHHHHHHHHhhhhhhhhhh
Q 008304          509 SVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKVR  568 (570)
Q Consensus       509 ~~v~qLk~dmErLq~Ei~aQl~~LEs~~~ErdaArle~~aA~ERak~LAaEVV~LEEk~l  568 (570)
                      ..|..|+++++.|+++++...-+.+.+..+.+..+.   +-.|....|-.|.-.||.++.
T Consensus       984 ~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~~---~L~~kv~~L~~e~~~L~qq~~ 1040 (1080)
T 2dfs_A          984 NRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKH---ETEQLVSELKEQNTLLKTEKE 1040 (1080)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence            444444444444444444444444444333333332   223555566666666666554

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=93.05  E-value=1.8  Score=41.04  Aligned_cols=86  Identities=14%  Similarity=0.104  Sum_probs=41.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH--HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 008304          460 EDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSS--LTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRN  537 (570)
Q Consensus       460 ddFAaLqQhIeDLT~EKfaLqRaLeks~~laEsLA~ENsA--LTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LEs~~~  537 (570)
                      +.+.+++..|+|+..+.-.+...++..++-.+..-..-..  =.+.|++....+..++..+..|+.+|...+..++.+..
T Consensus        46 ~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v~~~kE~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~  125 (256)
T 3na7_A           46 KAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEIKSERELRSLNIEEDIAKERSNQANREIENLQNEIKRKSE  125 (256)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444555555555555555554444444333322221111  12345555555666666665555555555555555554


Q ss_pred             HHHHHHhh
Q 008304          538 EYANVRLE  545 (570)
Q Consensus       538 ErdaArle  545 (570)
                      +.+.+...
T Consensus       126 ~l~~~~~~  133 (256)
T 3na7_A          126 KQEDLKKE  133 (256)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            44444333

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=92.86  E-value=2.5  Score=40.12  Aligned_cols=31  Identities=23%  Similarity=0.387  Sum_probs=16.0

Q ss_pred             HHHHHHHhhhhhHHHHHHHHHHhhhhhhhhh
Q 008304          537 NEYANVRLECNAADERAKILASEVIGLEEKV  567 (570)
Q Consensus       537 ~ErdaArle~~aA~ERak~LAaEVV~LEEk~  567 (570)
                      -||++...+...+..|-..|=-++..+.+++
T Consensus        90 kE~~aL~kEie~~~~~i~~lE~eile~~e~i  120 (256)
T 3na7_A           90 RELRSLNIEEDIAKERSNQANREIENLQNEI  120 (256)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4555555555555555555555555444443

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A

Probab=91.98  E-value=0.79  Score=51.89  Aligned_cols=12  Identities=17%  Similarity=0.473  Sum_probs=4.8

Q ss_pred             hhHHHHHHHHHH
Q 008304          460 EDFAALEQHIED  471 (570)
Q Consensus       460 ddFAaLqQhIeD  471 (570)
                      .++..|++-|++
T Consensus       857 ~El~~L~~eL~e  868 (1184)
T 1i84_S          857 EEMQAKDEELQR  868 (1184)
T ss_dssp             HHCCHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            344444433333

>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}

Probab=91.35  E-value=3.1  Score=35.25  Aligned_cols=73  Identities=19%  Similarity=0.374  Sum_probs=53.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 008304          463 AALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESF  535 (570)
Q Consensus       463 AaLqQhIeDLT~EKfaLqRaLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LEs~  535 (570)
                      +.|.+.|++|-.|+-.|-+.|+..++=.+.|-.+-...-+.||...-.+-++.+++.-+..++..-..-|+-+
T Consensus        21 ~~L~~eL~~lEke~~~l~~el~~le~E~~~L~~eE~~~w~eyn~~~~ql~e~~dE~~Sl~~q~~~~~~qLdkL   93 (96)
T 3q8t_A           21 ERLIQELEDVEKNRKVVAENLEKVQAEAERLDQEEAQYQREYSEFKRQQLELDDELKSVENQMRYAQMQLDKL   93 (96)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4455677777777777777777777777888888888888888888888888888877777766555555444

>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}

Probab=91.15  E-value=1.6  Score=40.61  Aligned_cols=76  Identities=14%  Similarity=0.191  Sum_probs=63.7

Q ss_pred             HHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhHHHHHHHHHHhhhhhhhhhh
Q 008304          493 LAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKVR  568 (570)
Q Consensus       493 LA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LEs~~~ErdaArle~~aA~ERak~LAaEVV~LEEk~l  568 (570)
                      +...|..+.+.-+.....+.+|+.++.+|+.+|+...-.++.+..|+.+.+++.+.+.++.+.|=.|=-.|=+|.|
T Consensus        59 ~vs~~~~~~~~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~RWM  134 (152)
T 3a7p_A           59 IVSHDDALLNTLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQLVARWL  134 (152)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444556666777788888889999999999999999999999999999999999999999999888766666554

>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}

Probab=89.91  E-value=7.2  Score=32.76  Aligned_cols=70  Identities=11%  Similarity=0.145  Sum_probs=39.5

Q ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhH
Q 008304          480 QRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAA  549 (570)
Q Consensus       480 qRaLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LEs~~~ErdaArle~~aA  549 (570)
                      .-..+.+.+-++++-.+.-.+-++..+-...|..|+..|..|+.++..-.-.|..+......+.-.+..|
T Consensus        15 k~e~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~~A   84 (101)
T 3u59_A           15 KLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATDA   84 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334445555566666666666666666667777777777777665554444444444444443333333

>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A

Probab=89.24  E-value=6  Score=33.53  Aligned_cols=44  Identities=14%  Similarity=0.166  Sum_probs=21.2

Q ss_pred             HHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 008304          484 EASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKV  527 (570)
Q Consensus       484 eks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~a  527 (570)
                      +.+.+-++++-.+.-.+-++..+-...|..|+..+..|+.|+..
T Consensus        19 e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~   62 (101)
T 3u1c_A           19 ENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQ   62 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence            33444444444444444445555555555555555555544433

>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}

Probab=88.04  E-value=7.7  Score=32.58  Aligned_cols=85  Identities=21%  Similarity=0.235  Sum_probs=59.7

Q ss_pred             HHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhHHH---HHHHHH---
Q 008304          484 EASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADE---RAKILA---  557 (570)
Q Consensus       484 eks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LEs~~~ErdaArle~~aA~E---Rak~LA---  557 (570)
                      ++-.+-++.|-.|.+...+++.+--..+.++....+++.+||.+-.-.+..+..|.|.+...+..|..   -+.-.+   
T Consensus         5 d~iKkKm~~lk~e~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~~A   84 (101)
T 3u59_A            5 EAIKKKMQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATDA   84 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445567777788888888888888888888888888888888777777777777777766666642   222223   


Q ss_pred             -Hhhhhhhhhhh
Q 008304          558 -SEVIGLEEKVR  568 (570)
Q Consensus       558 -aEVV~LEEk~l  568 (570)
                       +||-.|--||.
T Consensus        85 E~evasLnRriq   96 (101)
T 3u59_A           85 EAEVASLNRRIQ   96 (101)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence             37777766654

>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}

Probab=87.56  E-value=11  Score=35.31  Aligned_cols=102  Identities=15%  Similarity=0.109  Sum_probs=57.8

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 008304          459 NEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNE  538 (570)
Q Consensus       459 ~ddFAaLqQhIeDLT~EKfaLqRaLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LEs~~~E  538 (570)
                      ++-...||.-|+||...=-+-..+.+|.++..-.|......+-...++....+..|+.....|++|+..-...|+.-+..
T Consensus         5 neKi~~LekQL~E~n~kLk~EsE~~~rlkK~~tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~qEr~~   84 (168)
T 3o0z_A            5 NEKLSQLQKQLEEANDLLRTESDTAVRLRKSHTEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAILEAERRD   84 (168)
T ss_dssp             -----CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55667789899998765555556667777666666666666666666666666666666666666665555555555544


Q ss_pred             HHHHHhhhhhHHHHHHHHHHhh
Q 008304          539 YANVRLECNAADERAKILASEV  560 (570)
Q Consensus       539 rdaArle~~aA~ERak~LAaEV  560 (570)
                      |..+-....+...|-..|-.|+
T Consensus        85 r~q~se~~~elq~ri~~L~~El  106 (168)
T 3o0z_A           85 RGHDSEMIGDLQARITSLQEEV  106 (168)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            4444444444444444444443

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=86.80  E-value=5.5  Score=50.45  Aligned_cols=120  Identities=14%  Similarity=0.274  Sum_probs=74.6

Q ss_pred             ccccccccchhhHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HhhhHHHHHHHHh
Q 008304          450 QHGFYSTKHNEDFAA-----LEQHIEDLTQEKFALQRSLEASRALSESLA-----------------AENSSLTDSYNQQ  507 (570)
Q Consensus       450 ~~~F~s~~~~ddFAa-----LqQhIeDLT~EKfaLqRaLeks~~laEsLA-----------------~ENsALTdryNqQ  507 (570)
                      -|+|.+|++==+|=.     |.+..+++...+--|+.||+|-.+.+++++                 .|.+++...--..
T Consensus      1888 R~~yvTP~syLeli~~y~~ll~~K~~el~~~~~rl~~GL~KL~et~~~V~~l~~~L~~~~~~L~~k~~ea~~~l~~i~~~ 1967 (3245)
T 3vkg_A         1888 RQNYVTPRHYLDFINQVVLLINEKRDQLEEEQLHLNIGLKKLRDTEAQVKDLQVSLAQKNRELDVKNEQANQKLKQMVQD 1967 (3245)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            466777777666644     567778888888888888887655554432                 2334444444444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhhH-----------------HHHHHHHhhhhhHHHHHHHHHHhhhhhhhhhhc
Q 008304          508 RSVVNQLKSEMEKLQEEIKVQLVELESFR-----------------NEYANVRLECNAADERAKILASEVIGLEEKVRS  569 (570)
Q Consensus       508 ~~~v~qLk~dmErLq~Ei~aQl~~LEs~~-----------------~ErdaArle~~aA~ERak~LAaEVV~LEEk~lq  569 (570)
                      ...+++-|..++..+.+++.|..+.+..+                 .|.+.|+.+..+|.++-+..-.++-.||+++-+
T Consensus      1968 ~~~ae~~k~~v~~~~~~~~~~~~ei~~~k~~~e~dL~~A~Pa~Pkr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~ 2046 (3245)
T 3vkg_A         1968 QQAAEIKQKDARELQVQLDVRNKEIAVQKVKAYADLEKAEPTGPLREEVEQLENAANELKLKQDEIVATITALEKSIAT 2046 (3245)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44455555555555555555554444433                 445566677777777777777777777777654

>2efk_A CDC42-interacting protein 4; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.30A {Homo sapiens} SCOP: a.238.1.4

Probab=86.73  E-value=7.3  Score=36.11  Aligned_cols=84  Identities=20%  Similarity=0.134  Sum_probs=48.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhh
Q 008304          466 EQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLE  545 (570)
Q Consensus       466 qQhIeDLT~EKfaLqRaLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LEs~~~ErdaArle  545 (570)
                      ++.++.+..++......|+++++.=+.+..|-+.+...+..-..-.+.=+.+++++++........++..+.||..+...
T Consensus       115 ~~~~~k~~k~~~~~~~~l~KaKk~Y~~~~~e~e~a~~~~~~a~~~~~~s~~~~eK~~~k~~~~~~~~~~a~~~Y~~~v~~  194 (301)
T 2efk_A          115 FQEGRRAQQQLENGFKQLENSKRKFERDCREAEKAAQTAERLDQDINATKADVEKAKQQAHLRSHMAEESKNEYAAQLQR  194 (301)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444455555555666666666666666666666665543211000012345555655555556667777888888777


Q ss_pred             hhhH
Q 008304          546 CNAA  549 (570)
Q Consensus       546 ~~aA  549 (570)
                      ++..
T Consensus       195 ~n~~  198 (301)
T 2efk_A          195 FNRD  198 (301)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            7777

>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A

Probab=85.97  E-value=7.5  Score=35.07  Aligned_cols=70  Identities=21%  Similarity=0.281  Sum_probs=57.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 008304          471 DLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYA  540 (570)
Q Consensus       471 DLT~EKfaLqRaLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LEs~~~Erd  540 (570)
                      .||+-.-.|.++-.++---.+++.+=+.+|...-=+.-..|.+|+.+++.|.++++-..+++|.++.|-.
T Consensus        33 qLTqAQe~l~~~eaQAaTCNqTV~tL~~SL~~ekaq~q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~  102 (121)
T 3mq7_A           33 ELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQGQKKVEELEGEITTLNHKLQDASAEVERLRRENQ  102 (121)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhch
Confidence            6888888898888888777777777777777655555567999999999999999999999999997665

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=85.80  E-value=12  Score=42.67  Aligned_cols=47  Identities=15%  Similarity=0.151  Sum_probs=27.6

Q ss_pred             HHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 008304          484 EASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLV  530 (570)
Q Consensus       484 eks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~  530 (570)
                      ....+.+.+|-.|.+.|.+.+........+|++.+++++.+++....
T Consensus       980 ~~~~~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~~~L~~kv~ 1026 (1080)
T 2dfs_A          980 KNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVS 1026 (1080)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444555666666666666666666666666666666655553333

>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}

Probab=85.54  E-value=16  Score=32.71  Aligned_cols=68  Identities=12%  Similarity=0.115  Sum_probs=34.6

Q ss_pred             HHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhHHHHHHHHHHhhhhhhhh
Q 008304          492 SLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEK  566 (570)
Q Consensus       492 sLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LEs~~~ErdaArle~~aA~ERak~LAaEVV~LEEk  566 (570)
                      .+|+|--.+.+.+......+.++.+++..|..       +|.++..+++.+..+.....++-..|=-+++.||-.
T Consensus        65 NiadEl~k~~~~~~~L~~~l~~~~kE~~~lK~-------el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~  132 (138)
T 3hnw_A           65 NIADDYFKAKKMADSLSLDIENKDKEIYDLKH-------ELIAAQIKAESSAKEIKELKSEINKYQKNIVKLETE  132 (138)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444444444444444444444444       444444555555555555555555555566666543

>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}

Probab=85.53  E-value=5  Score=35.97  Aligned_cols=62  Identities=16%  Similarity=0.219  Sum_probs=43.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhHHHHHHHHHHhhhhhhhhhhcC
Q 008304          509 SVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKVRSL  570 (570)
Q Consensus       509 ~~v~qLk~dmErLq~Ei~aQl~~LEs~~~ErdaArle~~aA~ERak~LAaEVV~LEEk~lqL  570 (570)
                      +.+-.++++.+.|+++++...-++..++.|...++..+..+...-..|-.|+=.|++++-+|
T Consensus        68 dEl~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~l  129 (138)
T 3hnw_A           68 DDYFKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKL  129 (138)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445556666666666666677777888888888888888777777777777777776553

>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}

Probab=84.90  E-value=18  Score=31.23  Aligned_cols=97  Identities=16%  Similarity=0.194  Sum_probs=60.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH--hHH--HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 008304          468 HIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQ--QRS--VVNQLKSEMEKLQEEIKVQLVELESFRNEYANVR  543 (570)
Q Consensus       468 hIeDLT~EKfaLqRaLeks~~laEsLA~ENsALTdryNq--Q~~--~v~qLk~dmErLq~Ei~aQl~~LEs~~~ErdaAr  543 (570)
                      ||+=| ++.-...+-|..++...+.+..+-..|.+++.+  +..  .+.+-...|+.|++||.....+|..|+..++...
T Consensus         3 Hi~LL-RK~aE~~KqL~~~~q~~~e~e~~k~eL~~~~~~~~~~~~~k~~eq~~~le~lk~eL~~~~~el~~lq~~l~~~~   81 (107)
T 2no2_A            3 HADLL-RKNAEVTKQVSMARQAQVDLEREKKELEDSLERISDQGQRKTQEQLEVLESLKQELATSQRELQVLQGSLETSA   81 (107)
T ss_dssp             HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHH-HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44333 334445555666666666666666666666655  211  2233345567777777777788888888888888


Q ss_pred             hhhhhHHHHHHHHHHhhhhhhh
Q 008304          544 LECNAADERAKILASEVIGLEE  565 (570)
Q Consensus       544 le~~aA~ERak~LAaEVV~LEE  565 (570)
                      ++--.-.++-..+.+|--.|+.
T Consensus        82 ~~~~~l~~~~~~l~~Ek~~L~~  103 (107)
T 2no2_A           82 QSEANWAAEFAELEKERDSLVS  103 (107)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHh
Confidence            8777777776777777666654

>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}

Probab=84.72  E-value=12  Score=31.53  Aligned_cols=71  Identities=21%  Similarity=0.270  Sum_probs=46.2

Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 008304          458 HNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESF  535 (570)
Q Consensus       458 ~~ddFAaLqQhIeDLT~EKfaLqRaLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LEs~  535 (570)
                      .-+=|..||+-|+.+-. .++|+      +--.+.|-.+|..|....++-.+....|..+.++|++|..+=...|.++
T Consensus         4 S~ElleqLE~KIq~avd-tI~lL------qmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~L   74 (81)
T 2jee_A            4 SLEVFEKLEAKVQQAID-TITLL------QMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQAL   74 (81)
T ss_dssp             CHHHHHHHHHHHHHHHH-HHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHH-HHHHH------HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34567788888877643 33333      2345667777777777777777777778888888887766555444443

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=84.64  E-value=10  Score=48.26  Aligned_cols=101  Identities=17%  Similarity=0.178  Sum_probs=70.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHH------HHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 008304          467 QHIEDLTQEKFALQRSLEASR------ALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYA  540 (570)
Q Consensus       467 QhIeDLT~EKfaLqRaLeks~------~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LEs~~~Erd  540 (570)
                      +.-++....|-.-++.|+++.      +-.+.+.++-.+...+.++-...+.+|.+++++|+++.+....+-+.++.|.+
T Consensus      1987 ~~~~ei~~~k~~~e~dL~~A~Pa~Pkr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~ 2066 (3245)
T 3vkg_A         1987 VRNKEIAVQKVKAYADLEKAEPTGPLREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESS 2066 (3245)
T ss_dssp             HHHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333455566666666666653      22334455556666777778888888888888999888888888888888888


Q ss_pred             HHHhhhhhHHHHHHHHHHhhhhhhhhh
Q 008304          541 NVRLECNAADERAKILASEVIGLEEKV  567 (570)
Q Consensus       541 aArle~~aA~ERak~LAaEVV~LEEk~  567 (570)
                      ..+.....|..=-..|+.|-+--++.+
T Consensus      2067 ~~~~kl~rA~~Li~gL~~Ek~RW~~~~ 2093 (3245)
T 3vkg_A         2067 KVKNKVDRSIALLDNLNSERGRWEQQS 2093 (3245)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhhccccHHHHH
Confidence            888888887777777888766555544

>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A

Probab=84.64  E-value=2.7  Score=32.90  Aligned_cols=44  Identities=14%  Similarity=0.217  Sum_probs=25.9

Q ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhHHHHH
Q 008304          503 SYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERA  553 (570)
Q Consensus       503 ryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LEs~~~ErdaArle~~aA~ERa  553 (570)
                      +.++....|.+|..++.+|..++.+       ++.+..+|+-|+..|.+|-
T Consensus         5 ki~~Lss~V~~L~~kVdqLssdV~a-------l~~~v~~ak~eA~RAN~Rl   48 (52)
T 1jcd_A            5 KADQASSDAQTANAKADQASNDANA-------ARSDAQAAKDDAARANQRA   48 (52)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHhh
Confidence            3445556666666666666655443       4445556666666666664

>2efl_A Formin-binding protein 1; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.61A {Homo sapiens} SCOP: a.238.1.4

Probab=84.13  E-value=12  Score=34.61  Aligned_cols=68  Identities=10%  Similarity=0.169  Sum_probs=33.7

Q ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHH--------------HHHHHHHHHHHHHHHhhhhHHHHHHHHhhhh
Q 008304          482 SLEASRALSESLAAENSSLTDSYNQQRSVVNQLKS--------------EMEKLQEEIKVQLVELESFRNEYANVRLECN  547 (570)
Q Consensus       482 aLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk~--------------dmErLq~Ei~aQl~~LEs~~~ErdaArle~~  547 (570)
                      .+.+.++-.+....+-.....+|.+....+..++.              ++|+++.........++..+.||-.+...++
T Consensus       124 ~~~k~~k~~~~~~~~l~KaK~~Y~~~~~e~e~a~~~~~~~~~~~~~s~~~~eK~~~k~~~~~~~~~~a~~~Y~~~v~~~n  203 (305)
T 2efl_A          124 DGRKAQQHIETCWKQLESSKRRFERDCKEADRAQQYFEKMDADINVTKADVEKARQQAQIRHQMAEDSKADYSSILQKFN  203 (305)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333444444444455555555554444444              3444444443344445566667766666665


Q ss_pred             hH
Q 008304          548 AA  549 (570)
Q Consensus       548 aA  549 (570)
                      ..
T Consensus       204 ~~  205 (305)
T 2efl_A          204 HE  205 (305)
T ss_dssp             HH
T ss_pred             HH
Confidence            55

>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}

Probab=82.92  E-value=15  Score=30.49  Aligned_cols=32  Identities=16%  Similarity=0.212  Sum_probs=26.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008304          462 FAALEQHIEDLTQEKFALQRSLEASRALSESL  493 (570)
Q Consensus       462 FAaLqQhIeDLT~EKfaLqRaLeks~~laEsL  493 (570)
                      ...|++.|+.+|.||-.|+=.+...+..++.+
T Consensus         2 i~eLr~qi~~l~~e~~~l~~e~dn~~~~~edf   33 (86)
T 3swk_A            2 MRELRRQVDQLTNDKARVEVERDNLAEDIMRL   33 (86)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence            45789999999999999888888877777665

>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A

Probab=82.61  E-value=0.74  Score=48.87  Aligned_cols=32  Identities=13%  Similarity=0.185  Sum_probs=11.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008304          465 LEQHIEDLTQEKFALQRSLEASRALSESLAAE  496 (570)
Q Consensus       465 LqQhIeDLT~EKfaLqRaLeks~~laEsLA~E  496 (570)
                      |++-+..+.+|--..+.+|.++++.++.|+.+
T Consensus       340 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~e~  371 (575)
T 2i1j_A          340 YQDRLRQMQEEMERSQANLLEAQDMILRLEEQ  371 (575)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence            33344444444444444555555555544443

>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}

Probab=82.55  E-value=7  Score=33.03  Aligned_cols=60  Identities=23%  Similarity=0.372  Sum_probs=48.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHH
Q 008304          460 EDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEME  519 (570)
Q Consensus       460 ddFAaLqQhIeDLT~EKfaLqRaLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmE  519 (570)
                      +-++-||.-|++|-++.-.|....+.++.-.+.|.+||.-|.+..+.=...+..|=.+|+
T Consensus        20 dtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~LLgk~e   79 (81)
T 2jee_A           20 DTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGRME   79 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            456778889999999999999999888888889999998887777776666666655553

>3ajw_A Flagellar FLIJ protein; flagellum, type III secretion, coiled-coil, protein transpor; 2.10A {Salmonella typhimurium}

Probab=82.29  E-value=22  Score=30.06  Aligned_cols=94  Identities=15%  Similarity=0.103  Sum_probs=66.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH-------h------HHHHHHHHHHHHHHHHHHHHHHH
Q 008304          464 ALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQ-------Q------RSVVNQLKSEMEKLQEEIKVQLV  530 (570)
Q Consensus       464 aLqQhIeDLT~EKfaLqRaLeks~~laEsLA~ENsALTdryNq-------Q------~~~v~qLk~dmErLq~Ei~aQl~  530 (570)
                      +|+.+++=-..+.-...+.|.+++...+.....-..|...+++       .      ...+-....=+..|...|..|..
T Consensus         9 ~L~~ll~l~~~~ed~a~~~l~~a~~~~~~~~~~L~~L~~~~~~y~~~~~~~~~~g~~~~~l~~~~~fi~~L~~~I~~q~~   88 (150)
T 3ajw_A            9 ALETLKDLAEKEVDDAARLLGEMRRGCQQAEEQLKMLIDYQNEYRSNLNTDMGNGIASNRWINYQQFIQTLEKAIEQHRL   88 (150)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC--CCSGGGHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4777777666666666666666666666555555555553322       1      23344667778889999999999


Q ss_pred             HhhhhHHHHHHHHhhhhhHHHHHHHHH
Q 008304          531 ELESFRNEYANVRLECNAADERAKILA  557 (570)
Q Consensus       531 ~LEs~~~ErdaArle~~aA~ERak~LA  557 (570)
                      .|..+..+.+.+|....+|.-+-+++-
T Consensus        89 ~l~~~~~~~e~~r~~l~~a~~~~k~~e  115 (150)
T 3ajw_A           89 QLTQWTQKVDLALKSWREKKQRLQAWQ  115 (150)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999988887777653

>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A

Probab=81.33  E-value=3.7  Score=39.36  Aligned_cols=57  Identities=21%  Similarity=0.416  Sum_probs=31.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 008304          470 EDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIK  526 (570)
Q Consensus       470 eDLT~EKfaLqRaLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~  526 (570)
                      |-||+=|-+++-.|+.+-.|++.|..||..|++.--..-.++.+|+++++-|+++++
T Consensus         2 d~~~~YK~~~q~ql~~ad~LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~~   58 (190)
T 4emc_A            2 DPLTVYKNSVKQQIDSADLLVANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQVK   58 (190)
T ss_dssp             ------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            457888999999999999999999999999998877667777777777777776653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	570
d2efka1	279	CDC42-interacting protein 4, CIP4 {Human (Homo sap	86.47
d2efla1	288	Formin-binding protein 1, FNBP1 {Human (Homo sapie	82.17

>d2efka1 a.238.1.4 (A:10-288) CDC42-interacting protein 4, CIP4 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: BAR/IMD domain-like
superfamily: BAR/IMD domain-like
family: FCH domain
domain: CDC42-interacting protein 4, CIP4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.47  E-value=2.7  Score=35.50  Aligned_cols=81  Identities=20%  Similarity=0.162  Sum_probs=38.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhHH
Q 008304          471 DLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAAD  550 (570)
Q Consensus       471 DLT~EKfaLqRaLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LEs~~~ErdaArle~~aA~  550 (570)
                      .+..+.-.....|+++++.-.....|.+.+...+..-......-+.+++++++..+.....++..+.||-.+...++.+.
T Consensus       113 ~~~k~l~~~~~~~~k~k~~y~~~~~e~e~~~~~~~~~~~~~~~~~~~~~K~~~~~~~~~~~~~~~~~~y~~~l~~~n~~~  192 (279)
T d2efka1         113 RAQQQLENGFKQLENSKRKFERDCREAEKAAQTAERLDQDINATKADVEKAKQQAHLRSHMAEESKNEYAAQLQRFNRDQ  192 (279)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333444444444444444444444444433322222222344555555555555566666667666666666554


Q ss_pred             H
Q 008304          551 E  551 (570)
Q Consensus       551 E  551 (570)
                      +
T Consensus       193 ~  193 (279)
T d2efka1         193 A  193 (279)
T ss_dssp             H
T ss_pred             H
Confidence            4

>d2efla1 a.238.1.4 (A:1-288) Formin-binding protein 1, FNBP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: BAR/IMD domain-like
superfamily: BAR/IMD domain-like
family: FCH domain
domain: Formin-binding protein 1, FNBP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.17  E-value=5.4  Score=33.61  Aligned_cols=87  Identities=11%  Similarity=0.167  Sum_probs=50.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHH--------------HHHHHHHHHHHH
Q 008304          466 EQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEME--------------KLQEEIKVQLVE  531 (570)
Q Consensus       466 qQhIeDLT~EKfaLqRaLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmE--------------rLq~Ei~aQl~~  531 (570)
                      ...++++.+.+-.+.-.+.+...-.+....+-.....+|-+....+..++..++              +++...+....+
T Consensus       103 ~~~~~~~~~~~K~~~~~~~k~~k~~~~~~~~l~k~k~~Y~~~~~e~e~~~~~~~~~~~~~~~~~~~~~K~~~k~~~~~~~  182 (288)
T d2efla1         103 ARYVQELKQERKSNFHDGRKAQQHIETCWKQLESSKRRFERDCKEADRAQQYFEKMDADINVTKADVEKARQQAQIRHQM  182 (288)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccchHHHHHHHHHHHHHHHH
Confidence            333344444444444444555555555555666666666666555555554444              444455555666


Q ss_pred             hhhhHHHHHHHHhhhhhHHHH
Q 008304          532 LESFRNEYANVRLECNAADER  552 (570)
Q Consensus       532 LEs~~~ErdaArle~~aA~ER  552 (570)
                      ++..+.||-.+...++.+..+
T Consensus       183 ~~~a~~~Y~~~v~~~n~~~~~  203 (288)
T d2efla1         183 AEDSKADYSSILQKFNHEQHE  203 (288)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            667777888887777777655